<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-16 11:32:12"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C06SLm0098A22-k2LuV/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C06SLm0098A22-k2LuV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0098A22-k2LuV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E691913" ref_strand="+" ref_description="SGN-E691913 [LH_Ea07F15]">
      <seq>cctgttaatctttttataaacaatccaaattttcccctaaccccgattccactctcaattgtcttcttcctcattttcctatttaacaaaactcaatttctcatttccaattcctcaaactgaattttgatcatagagattatcgattatcgagttgagttcaaaatttcgattcaccggagctatgtcactgaggcccaactcgagaacggaggctcgccggagcaggtacaaagttgccgtatatgccgaggaaggacggacaagaagggaagataacatggttgagatccggaagaataaaacataacaaaatttgcttaataagcgtcccgaaggtttactacaagctcagcagtttcctagcactgctgctgtttctcaccttgataagaagctggagactcttcctgaattgattgctggagtttggtctgatgacagcattttgcaacttgaatgtacaacacaattccggaaactgctttcaattgaacgcaatcctcctatacaggaagtgatacaatctggggaacttcctcgctttgttgaatatcttgctcgagatgactatcatcaactgcagtttgaggcagcgtgggctcttacaaatattgcgtctggtacatcataaaacactaaagctgcgatagattatggttctgtcccaattttcatcacacttctaagttcaccaagcgatgatgtccgtgaacaagcagattgggctttgggaaatattgctggtgactcgcccaagtatcgtgaccttgtgcttggcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0098A22-k2LuV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0098A22.1" temp_strand="+" temp_description="C06SLm0098A22.1  AC219226.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0098A22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12573" stop="16521"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12871" g_stop="13267" g_length="397"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="397" r_length="397" r_score="0.940"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13268" i_stop="15342" i_length="2075">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15343" g_stop="15439" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="398" r_stop="494" r_length="97" r_score="0.979"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15440" i_stop="15564" i_length="125">
            <donor d_prob="0.880" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15565" g_stop="15656" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="495" r_stop="586" r_length="92" r_score="0.935"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15657" i_stop="15746" i_length="90">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.967" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15747" g_stop="15878" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="587" r_stop="718" r_length="132" r_score="0.939"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15879" i_stop="16156" i_length="278">
            <donor d_prob="0.995" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="16157" g_stop="16221" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="719" r_stop="783" r_length="65" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0098A22.1" gen_strand="+" ref_id="SGN-E691913" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>783</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0098A22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E691913" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12871" e_stop="13267"/>
          <exon e_start="15343" e_stop="15439"/>
          <exon e_start="15565" e_stop="15656"/>
          <exon e_start="15747" e_stop="15878"/>
          <exon e_start="16157" e_stop="16221"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTTTTCTTTTTAGAAACAATCCAAATTTTCCCCAAACCCTGATTCCACTCTCAATTGTCTTCTTCCTCATTTTCCTATTTAACAAAACTCAATTTCGCATTTCGAATTCCTCAAACTGAATTTTGTTCATAGAGATTATCGATTATCGAGTTGAGTTCAGAATTTCGATTCACCGGAGCTATGTCACTGAGGCCGAACTCGAGAACGGAGGCTCGCCGGAGCAGGTACAAAGTTGCCGTCGATGCGGAGGAAGGACGGAGAAGAAGGGAAGATAACATGGTTGAGATCCGGAAGAATAAAAGAGAAGAGAATTTGCTTAAGAAGCGTCGTGAAGGTTTACTACAAGCTCAGCAGTTTCCTAGCACTGCTGCTGTTTCTCACCTTGATAAGAAGGTATAGATTTTTTTCGTTGATTAACTTTTAGTTTCTTAGATACATATATTTTGATCGAATTTGATTGTCTGATTTGAATTTTCAAGTGCGATCAATGTTTACTCAGTGTGTGTCCTTGTGAGCTTAATTCGTTACTTCGATTTTTTCGTTTAGTTACTTGCTTCATTCAGTTCTAAACCTCAATTATGCTTAATTGATTCAATTATTTGTTTGAAGTTCAAGTGTGATCACTGTTTACTCGGTTTTCTCTTTTACGAGCTTAGTTCAGTACTTCGTATTTTTTGTTATTTAAATGCTTAATTTAGTTCTTAGATTCACTTATGCTTATTGAAATCAATTATTTGATTGAAATGCAAGTGCGTCAATGTTTACTCTCGGTGTTCGTCCTATCTAAGATAATCGGCTACTTGTATTTTTCGTTATTTAAATGCTTCATTCAGTTCTTACCTTTGCTTATCCTCATTGGATTCAATTGTTTTATCAAGACTAATTCATCTTTAGTTGCAAAGTGCAGCGCCAATTAATACCAAAAAATTAAAATATTTAGTTGCATATATATATATATATATATTATATATATATATATATAAAATCAAAATCTCAATAGAAGTAGCTTTGAAGATGAAGGAGGAGGAGGAGGAAAACGAAACCAAGGAAGAAGGAAAGAAGAAATACGTTGTGGTTGGACTTTGGAGTCGCCGGAAAAGTCTGACTGGTCATTGCCTCACTAGAGAAGTCTAGTCGAGTCGATGGGTTGGAGTCAAGTTGTAGTTTACGAATGCAACTGTGCAAATTTGGAAAGAAAACCCTAAAATTTAACTTTTAAAACACTACATTTTTTTTTTGAAATAGGTAACTTTCTTTTAAAACCTTAAATTGATTGTTTTTTTTTACGAAAATACAAAAAGTGACTCCTTGGTCGCCATGGCGTTGCCTTTTGAAGATCGCCTCGCCACAAAGATAATAGGCGCTGAAGGATCGCCTTGCCTTGCCTCTTGCCATTGATGATGAGACGATTACCTTCCACGACATTGTCTCAGCCGTATGATACCGATAGTGTCATAGGAATCAGTTATTTTATTTGCATGGCAAGTTCTATCAATTTTACATGGTGTCATCATTTCCAGCTTAATTTGCTACGCGTATTAATTACTTGCTCTATTCAGTTCTTAGCCTCACTAGTCCTTATTGAATTCAATTGTTTATTTTAATTGCAAGTGCGATCAAGACTAATTCATCTTTTCTCTTTGAGCTTACTCAGCAGCGTGAATTTTTGTTAACTACTCTCAGTCTTATGATGCAGATATTGTGATCGGTTTCAGTTGCTTTAGTTGAATTGCAAGTGCTATCAATTTTTACTTTCCAGCATAATTTGCTACTTGTTTTTACCTACTTTCTCCATTCAGTTCTTAGCCTCACTAATCCTTATTGGATTCAATTGTGTATTTGAATTGCAACTGCGATCAGGACTAGTTGGTATTGATCATTTCTAGCATTTATTTTCATTAATTACTTGCTTCATTCTGTTCTTAGGCTGAATTATCCAATTCTATTTGCATTCAGTTTCTATTTGAATGGCTAGCGCGATCAATGTTTACTCAGTGTGCATTCTTTCTTCATTCAGTTCTAAGCCTCATTTTTCCTTGATGGATACAATCTTTTATTTGAATTGCTAGTGCAATCAATGGTTACTTGGTATTCATCCTTTCAAGCATAATTGGGTACTATTATTTTTTGGTAATTACCTGCTTCACTCAGTTCTTAAGGATAACTTTTTTTACTTGTTAGAGAAGCATAATGTTTTCAATAGTTAGGTATACAGTCTGCTTTGTTTCTCCCTTGTCCGCAAAGCAAAAATGACATAATCACTATTTGAAGAGTCAAAAAGGTATTTGAAAAATACTATTTAAGAAAAAGGAAGAAATCTATACACTGAAAGATTAGATTAGTTGATTTCTACTTCAAATATAATCATCCTTGCAGCTATGGAGGAGTAGCATTGCGCCAAAAATAATATCATGCTGCTCTAGCAACAAACTTATCTGATTCAATTTTATTGGTTTATAACCTTTCAGCTGGAGACTCTTCCTGAATTGATTGCTGGGGTTTGGTCTGATGACAGCAGTTTGCAACTTGAATGTACAACACAATTCCGGAAACTGCTTTCAATTGGTCAGTGTTGCTTTGCTTTTTTCCTAAATGTATTTCTGTTTGATCACCTTGACAATGAATGTTTTTCCTCTCTGTATCTTTGTGTCTTAATTAGTATGCGTGTTCACTTCTGGTTGTTTTGGCAGAACGCAATCCTCCTATAGAGGAAGTGATACAGTCTGGGGTAGTTCCTCGCTTTGTTGAATTTCTTGCTCGAGATGACTATCCTCAACTGCAGGTTTTTTTACAAAATCTATTATTTTTGTTTTTTGTTTTGCAGTTCCATCTTTATTTCTAATGTTTACATAATTGGCATTCTATAATCTAGTTTGAGGCAGCGTGGGCTCTTACAAATATTGCATCTGGTACATCAGAAAACACTAAAGTTGTGATTGATTATGGTTCTGTCCCAATTTTCATCAGACTTCTAAGTTCACCAAGTGATGATGTCCGTGAACAGGTAAAACTTTATATATAAGAGGGCTAAGCTTTCATGTTTCTTCTCATAATTGTCATGATATTATGTCTATTTTTCTTAAAAAAATTGGGGTTACGGGAAGGAGTAATGGGGGAGAGAATTACAAAGTGGAAATCAAACCCTCACTGGCAAGATGAAAGTTCAAGTATTCAACCAACTTAGCTACTAAGATTCTCCTGATATTGTATGTATTATGCCAATTTATTTCTGAGAAGTTAAAAATTCTTTTATTTTGATATTTTTTTTAAAAAAATTTATAGGCCGTTTGGGCTTTGGGAAATATTGCTGGTGACTCGCCCAAGTATCGTGACCTTGTGCTTGGCCA</genome_strand>
        <mrna_strand>CCTGTTAATCTTTTTATAAACAATCCAAATTTTCCCCTAACCCCGATTCCACTCTCAATTGTCTTCTTCCTCATTTTCCTATTTAACAAAACTCAATTTCTCATTTCCAATTCCTCAAACTGAATTTTGATCATAGAGATTATCGATTATCGAGTTGAGTTCAAAATTTCGATTCACCGGAGCTATGTCACTGAGGCCCAACTCGAGAACGGAGGCTCGCCGGAGCAGGTACAAAGTTGCCGTATATGCCGAGGAAGGACGGACAAGAAGGGAAGATAACATGGTTGAGATCCGGAAGAATAAAACATAACAAAATTTGCTTAATAAGCGTCCCGAAGGTTTACTACAAGCTCAGCAGTTTCCTAGCACTGCTGCTGTTTCTCACCTTGATAAGAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGAGACTCTTCCTGAATTGATTGCTGGAGTTTGGTCTGATGACAGCATTTTGCAACTTGAATGTACAACACAATTCCGGAAACTGCTTTCAATTG.............................................................................................................................AACGCAATCCTCCTATACAGGAAGTGATACAATCTGGGGAACTTCCTCGCTTTGTTGAATATCTTGCTCGAGATGACTATCATCAACTGCAG..........................................................................................TTTGAGGCAGCGTGGGCTCTTACAAATATTGCGTCTGGTACATCATAAAACACTAAAGCTGCGATAGATTATGGTTCTGTCCCAATTTTCATCACACTTCTAAGTTCACCAAGCGATGATGTCCGTGAACAA......................................................................................................................................................................................................................................................................................GCAGATTGGGCTTTGGGAAATATTGCTGGTGACTCGCCCAAGTATCGTGACCTTGTGCTTGGCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0098A22-k2LuV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E739017" ref_strand="+" ref_description="SGN-E739017 [LC15DC12]">
      <seq>cattttcggcttcctcattttcctatttaacaaaactcaatttcgcatttcgaattcctcaaactgaattttgttcatagagattatcgattatcgagttgagttcagaatttcgattcaccggagctatgtcactgaggccgaactcgagaacggaggctcgccggagcaggtacaaagttgccgtcgatgcggaggaaggacggagaagaagggaagataacatggttgagatccggaagaataaaagagaagagaatttgcttaagaagcgtcgtgaaggtttactacaagctcagcagtttcctagcactgctgctgtttctcaccttgataagaagctggagactcttcctgaattgattgctggggtttggtctgatgacagcagtttgcaacttgaatgtacaacacaattccggaaactgctttcaattgaacgcaatcctcctatagaggaagtgatacagtctggggtagttcctcgctttgttgaatttcttgctcgagatgactatcctcaactgcagtttgaggcagcgtgggctcttacaaatattgcatctggtacatcagaaaacactaaagttgtgattgattatggttctgtcccaattttcatcagacttctaagttcaccaagtgatgatgtccgtgaacaggccgtttgggctttgggaaatattgctggtgactcgcccaagtatcgtgaccttgtgcttggccatggagctttagtggcattgctggcacaatttaatgagcaggcaaagctatctatgttgagaaatgctacctggacattgtcaaacttttgtaggggaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0098A22-k2LuV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0098A22.1" temp_strand="+" temp_description="C06SLm0098A22.1  AC219226.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0098A22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12628" stop="16620"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12927" g_stop="13267" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="341" r_length="341" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13268" i_stop="15342" i_length="2075">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15343" g_stop="15439" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="438" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15440" i_stop="15564" i_length="125">
            <donor d_prob="0.880" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15565" g_stop="15656" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="439" r_stop="530" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15657" i_stop="15746" i_length="90">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15747" g_stop="15878" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="531" r_stop="662" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15879" i_stop="16156" i_length="278">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="16157" g_stop="16320" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="663" r_stop="826" r_length="164" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0098A22.1" gen_strand="+" ref_id="SGN-E739017" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>826</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0098A22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E739017" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12927" e_stop="13267"/>
          <exon e_start="15343" e_stop="15439"/>
          <exon e_start="15565" e_stop="15656"/>
          <exon e_start="15747" e_stop="15878"/>
          <exon e_start="16157" e_stop="16320"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTGTCTTCTTCCTCATTTTCCTATTTAACAAAACTCAATTTCGCATTTCGAATTCCTCAAACTGAATTTTGTTCATAGAGATTATCGATTATCGAGTTGAGTTCAGAATTTCGATTCACCGGAGCTATGTCACTGAGGCCGAACTCGAGAACGGAGGCTCGCCGGAGCAGGTACAAAGTTGCCGTCGATGCGGAGGAAGGACGGAGAAGAAGGGAAGATAACATGGTTGAGATCCGGAAGAATAAAAGAGAAGAGAATTTGCTTAAGAAGCGTCGTGAAGGTTTACTACAAGCTCAGCAGTTTCCTAGCACTGCTGCTGTTTCTCACCTTGATAAGAAGGTATAGATTTTTTTCGTTGATTAACTTTTAGTTTCTTAGATACATATATTTTGATCGAATTTGATTGTCTGATTTGAATTTTCAAGTGCGATCAATGTTTACTCAGTGTGTGTCCTTGTGAGCTTAATTCGTTACTTCGATTTTTTCGTTTAGTTACTTGCTTCATTCAGTTCTAAACCTCAATTATGCTTAATTGATTCAATTATTTGTTTGAAGTTCAAGTGTGATCACTGTTTACTCGGTTTTCTCTTTTACGAGCTTAGTTCAGTACTTCGTATTTTTTGTTATTTAAATGCTTAATTTAGTTCTTAGATTCACTTATGCTTATTGAAATCAATTATTTGATTGAAATGCAAGTGCGTCAATGTTTACTCTCGGTGTTCGTCCTATCTAAGATAATCGGCTACTTGTATTTTTCGTTATTTAAATGCTTCATTCAGTTCTTACCTTTGCTTATCCTCATTGGATTCAATTGTTTTATCAAGACTAATTCATCTTTAGTTGCAAAGTGCAGCGCCAATTAATACCAAAAAATTAAAATATTTAGTTGCATATATATATATATATATATTATATATATATATATATAAAATCAAAATCTCAATAGAAGTAGCTTTGAAGATGAAGGAGGAGGAGGAGGAAAACGAAACCAAGGAAGAAGGAAAGAAGAAATACGTTGTGGTTGGACTTTGGAGTCGCCGGAAAAGTCTGACTGGTCATTGCCTCACTAGAGAAGTCTAGTCGAGTCGATGGGTTGGAGTCAAGTTGTAGTTTACGAATGCAACTGTGCAAATTTGGAAAGAAAACCCTAAAATTTAACTTTTAAAACACTACATTTTTTTTTTGAAATAGGTAACTTTCTTTTAAAACCTTAAATTGATTGTTTTTTTTTACGAAAATACAAAAAGTGACTCCTTGGTCGCCATGGCGTTGCCTTTTGAAGATCGCCTCGCCACAAAGATAATAGGCGCTGAAGGATCGCCTTGCCTTGCCTCTTGCCATTGATGATGAGACGATTACCTTCCACGACATTGTCTCAGCCGTATGATACCGATAGTGTCATAGGAATCAGTTATTTTATTTGCATGGCAAGTTCTATCAATTTTACATGGTGTCATCATTTCCAGCTTAATTTGCTACGCGTATTAATTACTTGCTCTATTCAGTTCTTAGCCTCACTAGTCCTTATTGAATTCAATTGTTTATTTTAATTGCAAGTGCGATCAAGACTAATTCATCTTTTCTCTTTGAGCTTACTCAGCAGCGTGAATTTTTGTTAACTACTCTCAGTCTTATGATGCAGATATTGTGATCGGTTTCAGTTGCTTTAGTTGAATTGCAAGTGCTATCAATTTTTACTTTCCAGCATAATTTGCTACTTGTTTTTACCTACTTTCTCCATTCAGTTCTTAGCCTCACTAATCCTTATTGGATTCAATTGTGTATTTGAATTGCAACTGCGATCAGGACTAGTTGGTATTGATCATTTCTAGCATTTATTTTCATTAATTACTTGCTTCATTCTGTTCTTAGGCTGAATTATCCAATTCTATTTGCATTCAGTTTCTATTTGAATGGCTAGCGCGATCAATGTTTACTCAGTGTGCATTCTTTCTTCATTCAGTTCTAAGCCTCATTTTTCCTTGATGGATACAATCTTTTATTTGAATTGCTAGTGCAATCAATGGTTACTTGGTATTCATCCTTTCAAGCATAATTGGGTACTATTATTTTTTGGTAATTACCTGCTTCACTCAGTTCTTAAGGATAACTTTTTTTACTTGTTAGAGAAGCATAATGTTTTCAATAGTTAGGTATACAGTCTGCTTTGTTTCTCCCTTGTCCGCAAAGCAAAAATGACATAATCACTATTTGAAGAGTCAAAAAGGTATTTGAAAAATACTATTTAAGAAAAAGGAAGAAATCTATACACTGAAAGATTAGATTAGTTGATTTCTACTTCAAATATAATCATCCTTGCAGCTATGGAGGAGTAGCATTGCGCCAAAAATAATATCATGCTGCTCTAGCAACAAACTTATCTGATTCAATTTTATTGGTTTATAACCTTTCAGCTGGAGACTCTTCCTGAATTGATTGCTGGGGTTTGGTCTGATGACAGCAGTTTGCAACTTGAATGTACAACACAATTCCGGAAACTGCTTTCAATTGGTCAGTGTTGCTTTGCTTTTTTCCTAAATGTATTTCTGTTTGATCACCTTGACAATGAATGTTTTTCCTCTCTGTATCTTTGTGTCTTAATTAGTATGCGTGTTCACTTCTGGTTGTTTTGGCAGAACGCAATCCTCCTATAGAGGAAGTGATACAGTCTGGGGTAGTTCCTCGCTTTGTTGAATTTCTTGCTCGAGATGACTATCCTCAACTGCAGGTTTTTTTACAAAATCTATTATTTTTGTTTTTTGTTTTGCAGTTCCATCTTTATTTCTAATGTTTACATAATTGGCATTCTATAATCTAGTTTGAGGCAGCGTGGGCTCTTACAAATATTGCATCTGGTACATCAGAAAACACTAAAGTTGTGATTGATTATGGTTCTGTCCCAATTTTCATCAGACTTCTAAGTTCACCAAGTGATGATGTCCGTGAACAGGTAAAACTTTATATATAAGAGGGCTAAGCTTTCATGTTTCTTCTCATAATTGTCATGATATTATGTCTATTTTTCTTAAAAAAATTGGGGTTACGGGAAGGAGTAATGGGGGAGAGAATTACAAAGTGGAAATCAAACCCTCACTGGCAAGATGAAAGTTCAAGTATTCAACCAACTTAGCTACTAAGATTCTCCTGATATTGTATGTATTATGCCAATTTATTTCTGAGAAGTTAAAAATTCTTTTATTTTGATATTTTTTTTAAAAAAATTTATAGGCCGTTTGGGCTTTGGGAAATATTGCTGGTGACTCGCCCAAGTATCGTGACCTTGTGCTTGGCCATGGAGCTTTAGTGGCATTGCTGGCACAATTTAATGAGCAGGCAAAGCTATCTATGTTGAGAAATGCTACCTGGACATTGTCAAACTTTTGTAGGGGAAA</genome_strand>
        <mrna_strand>CATTTTCGGCTTCCTCATTTTCCTATTTAACAAAACTCAATTTCGCATTTCGAATTCCTCAAACTGAATTTTGTTCATAGAGATTATCGATTATCGAGTTGAGTTCAGAATTTCGATTCACCGGAGCTATGTCACTGAGGCCGAACTCGAGAACGGAGGCTCGCCGGAGCAGGTACAAAGTTGCCGTCGATGCGGAGGAAGGACGGAGAAGAAGGGAAGATAACATGGTTGAGATCCGGAAGAATAAAAGAGAAGAGAATTTGCTTAAGAAGCGTCGTGAAGGTTTACTACAAGCTCAGCAGTTTCCTAGCACTGCTGCTGTTTCTCACCTTGATAAGAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGAGACTCTTCCTGAATTGATTGCTGGGGTTTGGTCTGATGACAGCAGTTTGCAACTTGAATGTACAACACAATTCCGGAAACTGCTTTCAATTG.............................................................................................................................AACGCAATCCTCCTATAGAGGAAGTGATACAGTCTGGGGTAGTTCCTCGCTTTGTTGAATTTCTTGCTCGAGATGACTATCCTCAACTGCAG..........................................................................................TTTGAGGCAGCGTGGGCTCTTACAAATATTGCATCTGGTACATCAGAAAACACTAAAGTTGTGATTGATTATGGTTCTGTCCCAATTTTCATCAGACTTCTAAGTTCACCAAGTGATGATGTCCGTGAACAG......................................................................................................................................................................................................................................................................................GCCGTTTGGGCTTTGGGAAATATTGCTGGTGACTCGCCCAAGTATCGTGACCTTGTGCTTGGCCATGGAGCTTTAGTGGCATTGCTGGCACAATTTAATGAGCAGGCAAAGCTATCTATGTTGAGAAATGCTACCTGGACATTGTCAAACTTTTGTAGGGGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0098A22-k2LuV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E301119" ref_strand="+" ref_description="SGN-E301119 [cLEW-22-G15]">
      <seq>tcttcttcctcattttcctatttaacaaaactcaatttcgcatttcgaattcctcaaactgaattttgttcatagagattatcgattatcgagttgagttcagaatttcgattcaccggagctatgtcactgaggccgaactcgagaacggaggctcgccggagcaggtacaaagttgccgtcgatgcggaggaaggacggagaagaagggaagataacatggttgagatccggaagaataaaagagaacagaatttgcttaagaagcgtcgtgaaggtttactacaagctcagcagtttcctagcactgctgctgtttctcaccttgataagaagctggagactcttcctgaattgattgctggggtttggtctgatgacagcagtttgcaacttgaatgtacaacacaattccggaaactgctttcaattgaacgcaatcctcctatagaggaagtgatacagtctggggtagttcctcgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0098A22-k2LuV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0098A22.1" temp_strand="+" temp_description="C06SLm0098A22.1  AC219226.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0098A22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12632" stop="15915"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12932" g_stop="13267" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="336" r_length="336" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13268" i_stop="15342" i_length="2075">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15343" g_stop="15439" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="433" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15440" i_stop="15564" i_length="125">
            <donor d_prob="0.880" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15565" g_stop="15615" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="484" r_length="51" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0098A22.1" gen_strand="+" ref_id="SGN-E301119" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>484</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0098A22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E301119" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12932" e_stop="13267"/>
          <exon e_start="15343" e_stop="15439"/>
          <exon e_start="15565" e_stop="15615"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCTTCCTCATTTTCCTATTTAACAAAACTCAATTTCGCATTTCGAATTCCTCAAACTGAATTTTGTTCATAGAGATTATCGATTATCGAGTTGAGTTCAGAATTTCGATTCACCGGAGCTATGTCACTGAGGCCGAACTCGAGAACGGAGGCTCGCCGGAGCAGGTACAAAGTTGCCGTCGATGCGGAGGAAGGACGGAGAAGAAGGGAAGATAACATGGTTGAGATCCGGAAGAATAAAAGAGAAGAGAATTTGCTTAAGAAGCGTCGTGAAGGTTTACTACAAGCTCAGCAGTTTCCTAGCACTGCTGCTGTTTCTCACCTTGATAAGAAGGTATAGATTTTTTTCGTTGATTAACTTTTAGTTTCTTAGATACATATATTTTGATCGAATTTGATTGTCTGATTTGAATTTTCAAGTGCGATCAATGTTTACTCAGTGTGTGTCCTTGTGAGCTTAATTCGTTACTTCGATTTTTTCGTTTAGTTACTTGCTTCATTCAGTTCTAAACCTCAATTATGCTTAATTGATTCAATTATTTGTTTGAAGTTCAAGTGTGATCACTGTTTACTCGGTTTTCTCTTTTACGAGCTTAGTTCAGTACTTCGTATTTTTTGTTATTTAAATGCTTAATTTAGTTCTTAGATTCACTTATGCTTATTGAAATCAATTATTTGATTGAAATGCAAGTGCGTCAATGTTTACTCTCGGTGTTCGTCCTATCTAAGATAATCGGCTACTTGTATTTTTCGTTATTTAAATGCTTCATTCAGTTCTTACCTTTGCTTATCCTCATTGGATTCAATTGTTTTATCAAGACTAATTCATCTTTAGTTGCAAAGTGCAGCGCCAATTAATACCAAAAAATTAAAATATTTAGTTGCATATATATATATATATATATTATATATATATATATATAAAATCAAAATCTCAATAGAAGTAGCTTTGAAGATGAAGGAGGAGGAGGAGGAAAACGAAACCAAGGAAGAAGGAAAGAAGAAATACGTTGTGGTTGGACTTTGGAGTCGCCGGAAAAGTCTGACTGGTCATTGCCTCACTAGAGAAGTCTAGTCGAGTCGATGGGTTGGAGTCAAGTTGTAGTTTACGAATGCAACTGTGCAAATTTGGAAAGAAAACCCTAAAATTTAACTTTTAAAACACTACATTTTTTTTTTGAAATAGGTAACTTTCTTTTAAAACCTTAAATTGATTGTTTTTTTTTACGAAAATACAAAAAGTGACTCCTTGGTCGCCATGGCGTTGCCTTTTGAAGATCGCCTCGCCACAAAGATAATAGGCGCTGAAGGATCGCCTTGCCTTGCCTCTTGCCATTGATGATGAGACGATTACCTTCCACGACATTGTCTCAGCCGTATGATACCGATAGTGTCATAGGAATCAGTTATTTTATTTGCATGGCAAGTTCTATCAATTTTACATGGTGTCATCATTTCCAGCTTAATTTGCTACGCGTATTAATTACTTGCTCTATTCAGTTCTTAGCCTCACTAGTCCTTATTGAATTCAATTGTTTATTTTAATTGCAAGTGCGATCAAGACTAATTCATCTTTTCTCTTTGAGCTTACTCAGCAGCGTGAATTTTTGTTAACTACTCTCAGTCTTATGATGCAGATATTGTGATCGGTTTCAGTTGCTTTAGTTGAATTGCAAGTGCTATCAATTTTTACTTTCCAGCATAATTTGCTACTTGTTTTTACCTACTTTCTCCATTCAGTTCTTAGCCTCACTAATCCTTATTGGATTCAATTGTGTATTTGAATTGCAACTGCGATCAGGACTAGTTGGTATTGATCATTTCTAGCATTTATTTTCATTAATTACTTGCTTCATTCTGTTCTTAGGCTGAATTATCCAATTCTATTTGCATTCAGTTTCTATTTGAATGGCTAGCGCGATCAATGTTTACTCAGTGTGCATTCTTTCTTCATTCAGTTCTAAGCCTCATTTTTCCTTGATGGATACAATCTTTTATTTGAATTGCTAGTGCAATCAATGGTTACTTGGTATTCATCCTTTCAAGCATAATTGGGTACTATTATTTTTTGGTAATTACCTGCTTCACTCAGTTCTTAAGGATAACTTTTTTTACTTGTTAGAGAAGCATAATGTTTTCAATAGTTAGGTATACAGTCTGCTTTGTTTCTCCCTTGTCCGCAAAGCAAAAATGACATAATCACTATTTGAAGAGTCAAAAAGGTATTTGAAAAATACTATTTAAGAAAAAGGAAGAAATCTATACACTGAAAGATTAGATTAGTTGATTTCTACTTCAAATATAATCATCCTTGCAGCTATGGAGGAGTAGCATTGCGCCAAAAATAATATCATGCTGCTCTAGCAACAAACTTATCTGATTCAATTTTATTGGTTTATAACCTTTCAGCTGGAGACTCTTCCTGAATTGATTGCTGGGGTTTGGTCTGATGACAGCAGTTTGCAACTTGAATGTACAACACAATTCCGGAAACTGCTTTCAATTGGTCAGTGTTGCTTTGCTTTTTTCCTAAATGTATTTCTGTTTGATCACCTTGACAATGAATGTTTTTCCTCTCTGTATCTTTGTGTCTTAATTAGTATGCGTGTTCACTTCTGGTTGTTTTGGCAGAACGCAATCCTCCTATAGAGGAAGTGATACAGTCTGGGGTAGTTCCTCGCT</genome_strand>
        <mrna_strand>TCTTCTTCCTCATTTTCCTATTTAACAAAACTCAATTTCGCATTTCGAATTCCTCAAACTGAATTTTGTTCATAGAGATTATCGATTATCGAGTTGAGTTCAGAATTTCGATTCACCGGAGCTATGTCACTGAGGCCGAACTCGAGAACGGAGGCTCGCCGGAGCAGGTACAAAGTTGCCGTCGATGCGGAGGAAGGACGGAGAAGAAGGGAAGATAACATGGTTGAGATCCGGAAGAATAAAAGAGAACAGAATTTGCTTAAGAAGCGTCGTGAAGGTTTACTACAAGCTCAGCAGTTTCCTAGCACTGCTGCTGTTTCTCACCTTGATAAGAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGAGACTCTTCCTGAATTGATTGCTGGGGTTTGGTCTGATGACAGCAGTTTGCAACTTGAATGTACAACACAATTCCGGAAACTGCTTTCAATTG.............................................................................................................................AACGCAATCCTCCTATAGAGGAAGTGATACAGTCTGGGGTAGTTCCTCGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0098A22-k2LuV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E745184" ref_strand="+" ref_description="SGN-E745184 [GI|47105944]">
      <seq>gctcaaactgaattttgttcatagagattatcgattatcgagttgagttcagaatttcgattcaccggagctatgtcactgaggccgaactcgagaacggaggctcgccggagcaggtacaaagttgccgtcgatgcggaggaaggacggagaagaagggaagataacatggttgagatccggaagaataaaagagaagagaatttgcttaagaagcgtcgtgaaggtttactacaagctcagcagtttcctagcactgctgctgtttctcaccttgataagaagctggagactcttcctgaattgattgctggggtttggtctgatgacagcagtttgcaacttgaatgtacaacacaattccggaaactgctttcaattgaacgcaatcctcctatagaggaagtgatacagtctggggtagttcctcgctttgttgaatttcttgctcgagatgactatcctcaactgcagtttgaggcagcgtgggctcttacaaatattgcatctggtacatcagaaaacactaaagttgtgattgattatggttctgtcccaattttcatcagacttctaagttcaccaagtgatgatgtccgtgaacaggccgtttgggctttgggaaatattgctggtgactcgcccaagtatcgtgaccttgtgcttggccatggagctttagtggcattgctggcacaatttaatgagcaggcaaagctatctatgttgagaaatgctacctggacattgtcaaacttttgtaggggaaaacctcagccactgttcgagcagacaaaagcggcactccccactcttggtcgccttatccactcaaatgatgaagaagtcttgacagatgcatgctgggctctttcatatctttctgatggaactaatgacaaaatccaggctgttattgaagctggagtgtgttcccgccttgttgagctgctacttcattcttcaccatctgttctcattcctgccttgcgcactgttggtaacatagtcacaggagacgatatccaaactcaggttatgattgaccatcatgctcttccctgccttgttaacctgttgacgcaaaattacaaaaaaagcattaaaaaggaagcttgttggacaatctcgaacattacagctggtaatagaaatcaaattcagattgtgatcgaggctggcattattgcccctcttgtatatctgctacaaaatgctgaatttgagataaagaaagaggctgcttgggcaatttcaaatgctacgtccggtggaaatcatgatcaaatcaagttcttggtgagccaaggttgtataaaaccattgtgtgatcttctggtatgtcctgacccaagaattgtcactgtctgcttggaagggcttgagaatattctgaagattggggaagctgataaggatctaggaaacacagaaggcgtgaatgtttatgcccagttaatcgacgaggctgaaggtctagaaaagattgaaaacctccaaagccatgacaacactgaaatctatgagaaagcagtgaagatcctcgaaacttattggttggaggaggaagatgtgccggtttcattaaatgaagatcaattcgaatttggaggggccgatatatctcttccatcgggaggatttaacttcagttgatggggtttggctagcaggtcagtgagtggttttaaattggagaaacatcctctttaaactatgtgtagagagagttgtcatctacttgggggaggtttggattttacatatattttcttctatttattgatggagttggtgttgtataagttactttttcccctagactagacatattggtggtggtggatatatatatgtatacatgttaatgtacaagtcatacgtgggctctccatgacattatttggtgtaaacatatacttgtttccgcaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0098A22-k2LuV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0098A22.1" temp_strand="+" temp_description="C06SLm0098A22.1  AC219226.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0098A22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12684" stop="19265"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12983" g_stop="13267" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="285" r_length="285" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13268" i_stop="15342" i_length="2075">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15343" g_stop="15439" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="382" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15440" i_stop="15564" i_length="125">
            <donor d_prob="0.880" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15565" g_stop="15656" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="474" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15657" i_stop="15746" i_length="90">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15747" g_stop="15878" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="475" r_stop="606" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15879" i_stop="16156" i_length="278">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="16157" g_stop="16342" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="607" r_stop="792" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="16343" i_stop="16429" i_length="87">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="16430" g_stop="16593" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="793" r_stop="956" r_length="164" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="16594" i_stop="16689" i_length="96">
            <donor d_prob="0.914" d_score="1.00"/>
            <acceptor a_prob="0.500" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="16690" g_stop="16768" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="957" r_stop="1035" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="16769" i_stop="17620" i_length="852">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.941" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="17621" g_stop="17749" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="1036" r_stop="1164" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="17750" i_stop="17884" i_length="135">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="17885" g_stop="18012" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="1165" r_stop="1292" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="18013" i_stop="18092" i_length="80">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.763" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="18093" g_stop="18460" g_length="368"/>
          <reference_exon_boundary r_type="cDNA" r_start="1293" r_stop="1660" r_length="368" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="18461" i_stop="18697" i_length="237">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="18698" g_stop="18965" g_length="268"/>
          <reference_exon_boundary r_type="cDNA" r_start="1661" r_stop="1928" r_length="268" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1931" polyA_stop="1946"/>
      <MATCH_line gen_id="C06SLm0098A22.1" gen_strand="+" ref_id="SGN-E745184" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1928</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0098A22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E745184" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12983" e_stop="13267"/>
          <exon e_start="15343" e_stop="15439"/>
          <exon e_start="15565" e_stop="15656"/>
          <exon e_start="15747" e_stop="15878"/>
          <exon e_start="16157" e_stop="16342"/>
          <exon e_start="16430" e_stop="16593"/>
          <exon e_start="16690" e_stop="16768"/>
          <exon e_start="17621" e_stop="17749"/>
          <exon e_start="17885" e_stop="18012"/>
          <exon e_start="18093" e_stop="18460"/>
          <exon e_start="18698" e_stop="18965"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCAAACTGAATTTTGTTCATAGAGATTATCGATTATCGAGTTGAGTTCAGAATTTCGATTCACCGGAGCTATGTCACTGAGGCCGAACTCGAGAACGGAGGCTCGCCGGAGCAGGTACAAAGTTGCCGTCGATGCGGAGGAAGGACGGAGAAGAAGGGAAGATAACATGGTTGAGATCCGGAAGAATAAAAGAGAAGAGAATTTGCTTAAGAAGCGTCGTGAAGGTTTACTACAAGCTCAGCAGTTTCCTAGCACTGCTGCTGTTTCTCACCTTGATAAGAAGGTATAGATTTTTTTCGTTGATTAACTTTTAGTTTCTTAGATACATATATTTTGATCGAATTTGATTGTCTGATTTGAATTTTCAAGTGCGATCAATGTTTACTCAGTGTGTGTCCTTGTGAGCTTAATTCGTTACTTCGATTTTTTCGTTTAGTTACTTGCTTCATTCAGTTCTAAACCTCAATTATGCTTAATTGATTCAATTATTTGTTTGAAGTTCAAGTGTGATCACTGTTTACTCGGTTTTCTCTTTTACGAGCTTAGTTCAGTACTTCGTATTTTTTGTTATTTAAATGCTTAATTTAGTTCTTAGATTCACTTATGCTTATTGAAATCAATTATTTGATTGAAATGCAAGTGCGTCAATGTTTACTCTCGGTGTTCGTCCTATCTAAGATAATCGGCTACTTGTATTTTTCGTTATTTAAATGCTTCATTCAGTTCTTACCTTTGCTTATCCTCATTGGATTCAATTGTTTTATCAAGACTAATTCATCTTTAGTTGCAAAGTGCAGCGCCAATTAATACCAAAAAATTAAAATATTTAGTTGCATATATATATATATATATATTATATATATATATATATAAAATCAAAATCTCAATAGAAGTAGCTTTGAAGATGAAGGAGGAGGAGGAGGAAAACGAAACCAAGGAAGAAGGAAAGAAGAAATACGTTGTGGTTGGACTTTGGAGTCGCCGGAAAAGTCTGACTGGTCATTGCCTCACTAGAGAAGTCTAGTCGAGTCGATGGGTTGGAGTCAAGTTGTAGTTTACGAATGCAACTGTGCAAATTTGGAAAGAAAACCCTAAAATTTAACTTTTAAAACACTACATTTTTTTTTTGAAATAGGTAACTTTCTTTTAAAACCTTAAATTGATTGTTTTTTTTTACGAAAATACAAAAAGTGACTCCTTGGTCGCCATGGCGTTGCCTTTTGAAGATCGCCTCGCCACAAAGATAATAGGCGCTGAAGGATCGCCTTGCCTTGCCTCTTGCCATTGATGATGAGACGATTACCTTCCACGACATTGTCTCAGCCGTATGATACCGATAGTGTCATAGGAATCAGTTATTTTATTTGCATGGCAAGTTCTATCAATTTTACATGGTGTCATCATTTCCAGCTTAATTTGCTACGCGTATTAATTACTTGCTCTATTCAGTTCTTAGCCTCACTAGTCCTTATTGAATTCAATTGTTTATTTTAATTGCAAGTGCGATCAAGACTAATTCATCTTTTCTCTTTGAGCTTACTCAGCAGCGTGAATTTTTGTTAACTACTCTCAGTCTTATGATGCAGATATTGTGATCGGTTTCAGTTGCTTTAGTTGAATTGCAAGTGCTATCAATTTTTACTTTCCAGCATAATTTGCTACTTGTTTTTACCTACTTTCTCCATTCAGTTCTTAGCCTCACTAATCCTTATTGGATTCAATTGTGTATTTGAATTGCAACTGCGATCAGGACTAGTTGGTATTGATCATTTCTAGCATTTATTTTCATTAATTACTTGCTTCATTCTGTTCTTAGGCTGAATTATCCAATTCTATTTGCATTCAGTTTCTATTTGAATGGCTAGCGCGATCAATGTTTACTCAGTGTGCATTCTTTCTTCATTCAGTTCTAAGCCTCATTTTTCCTTGATGGATACAATCTTTTATTTGAATTGCTAGTGCAATCAATGGTTACTTGGTATTCATCCTTTCAAGCATAATTGGGTACTATTATTTTTTGGTAATTACCTGCTTCACTCAGTTCTTAAGGATAACTTTTTTTACTTGTTAGAGAAGCATAATGTTTTCAATAGTTAGGTATACAGTCTGCTTTGTTTCTCCCTTGTCCGCAAAGCAAAAATGACATAATCACTATTTGAAGAGTCAAAAAGGTATTTGAAAAATACTATTTAAGAAAAAGGAAGAAATCTATACACTGAAAGATTAGATTAGTTGATTTCTACTTCAAATATAATCATCCTTGCAGCTATGGAGGAGTAGCATTGCGCCAAAAATAATATCATGCTGCTCTAGCAACAAACTTATCTGATTCAATTTTATTGGTTTATAACCTTTCAGCTGGAGACTCTTCCTGAATTGATTGCTGGGGTTTGGTCTGATGACAGCAGTTTGCAACTTGAATGTACAACACAATTCCGGAAACTGCTTTCAATTGGTCAGTGTTGCTTTGCTTTTTTCCTAAATGTATTTCTGTTTGATCACCTTGACAATGAATGTTTTTCCTCTCTGTATCTTTGTGTCTTAATTAGTATGCGTGTTCACTTCTGGTTGTTTTGGCAGAACGCAATCCTCCTATAGAGGAAGTGATACAGTCTGGGGTAGTTCCTCGCTTTGTTGAATTTCTTGCTCGAGATGACTATCCTCAACTGCAGGTTTTTTTACAAAATCTATTATTTTTGTTTTTTGTTTTGCAGTTCCATCTTTATTTCTAATGTTTACATAATTGGCATTCTATAATCTAGTTTGAGGCAGCGTGGGCTCTTACAAATATTGCATCTGGTACATCAGAAAACACTAAAGTTGTGATTGATTATGGTTCTGTCCCAATTTTCATCAGACTTCTAAGTTCACCAAGTGATGATGTCCGTGAACAGGTAAAACTTTATATATAAGAGGGCTAAGCTTTCATGTTTCTTCTCATAATTGTCATGATATTATGTCTATTTTTCTTAAAAAAATTGGGGTTACGGGAAGGAGTAATGGGGGAGAGAATTACAAAGTGGAAATCAAACCCTCACTGGCAAGATGAAAGTTCAAGTATTCAACCAACTTAGCTACTAAGATTCTCCTGATATTGTATGTATTATGCCAATTTATTTCTGAGAAGTTAAAAATTCTTTTATTTTGATATTTTTTTTAAAAAAATTTATAGGCCGTTTGGGCTTTGGGAAATATTGCTGGTGACTCGCCCAAGTATCGTGACCTTGTGCTTGGCCATGGAGCTTTAGTGGCATTGCTGGCACAATTTAATGAGCAGGCAAAGCTATCTATGTTGAGAAATGCTACCTGGACATTGTCAAACTTTTGTAGGGGAAAACCTCAGCCACTGTTCGAGCAGGTTTGACTTTAAAGATAAAGTTTGTTTGATCTTTTCAGATATTTATATTACTTTTAAAGGTTATGCCTTTTAAAATTCATCGCGCAGACAAAAGCGGCACTCCCCACTCTTGGTCGCCTTATCCACTCAAATGATGAAGAAGTCTTGACAGATGCATGCTGGGCTCTTTCATATCTTTCTGATGGAACTAATGACAAAATCCAGGCTGTTATTGAAGCTGGAGTGTGTTCCCGCCTTGTTGAGCTGCTACTGTGAGTTATAGATCTTACTTTTGAGGGTTTGTCTTAGGCTTTCGATATGTTAAAATCATAAGTTTCTTACTCCCTTCATCTTTTTTTCGTGAGTAGTCATTCTTCACCATCTGTTCTCATTCCTGCCTTGCGCACTGTTGGTAACATAGTCACAGGAGACGATATCCAAACTCAGGTATTTATCATCCTCCCAGCCAATTTTTCATGTTTGATTTTTTTTTTTCGTTTTTCCCTCTTCTCATCCTTAATTGAGTCTTTGTGTAAACATGAATTCTCAATATCTAATCCATCAGTACGTCAGATGTATCTTCATCTTTTTGTTTAGGTAAATTATGCTGGTCAGATAAAAATACTTAAAAATCTAGCTTTCGTCAATGATAATTCAATTTTTGTAATAATTCTGATAGTCAACTATATCATAATCATGATATGAAAGAAAAGAGGAGTAAAGATTGGCTAGTCAATTAGTTCTCATTAAGTTTCTACCATGTTTAAGAGAGGTTACTCACGGAAGTCTTCGCTAATTCATCCGTGTACTGCAGTCAGTCTTCAGTTATCACGTTTGCCTACCTGAGTAGGGGGTTAGTGGTGTTTGGCTGTTATGATTATTTTTAGAATAAACTTTCCATTGCCGAACTGCTCACTGGGATAGTGTTGCACCACATATTTACGGAACAAATGGTGTTACATCTCTATTTGTTCTTAGGAGAAAAAATAGGGAGAGGAAATTTTCTAAATTTTTGGTCCCTGAAACGTAAGACGAGTGAAATTGAGTTAACTTCTTTGCTATCCTGTTATTCTCCTACCAAGGTAGGGAAGCTCTAATAGGGTAGTATTGTACGGCAGAGGCATGCTCTCTTTCAGTGAGGAGTTATTTGCAACCTTCCATTTTTGTTACCTCTCAGACGTAGTGGAAATAAAATGGACATAAAAACTACATCTTTTGGTTGTTGAAGCAAATTATGTCCTACCTAATTTATCAGCTGGAATCTTTTTTGGTGGACATTGATGAATCTATATTGTTTAGGTTATGATTGACCATCATGCTCTTCCCTGCCTTGTTAACCTGTTGACGCAAAATTACAAAAAAAGCATTAAAAAGGAAGCTTGTTGGACAATCTCGAACATTACAGCTGGTAATAGAAATCAAATTCAGGTATGTTGTATGGTAATTGACAATTTGTGCTTCTTTATCAATTGACAGAGAACTGAAAATAAGTGAAGAAAGAGAACCTTTGCAAGATGATTCAGTTTTGTATAATGATACTGAAAGGGGTTTTAATTGAAATAGATTGTGATCGAGGCTGGCATTATTGCCCCTCTTGTATATCTGCTACAAAATGCTGAATTTGAGATAAAGAAAGAGGCTGCTTGGGCAATTTCAAATGCTACGTCCGGTGGAAATCATGATCAAATCAAGTATGGTTCCTTTAGCATATTCAGTTTCATCTGCTTAACCTTACATCTAGTTTGAAGCTCACATGTAAATTGATTTCTAGGTTCTTGGTGAGCCAAGGTTGTATAAAACCATTGTGTGATCTTCTGGTATGTCCTGACCCAAGAATTGTCACTGTCTGCTTGGAAGGGCTTGAGAATATTCTGAAGATTGGGGAAGCTGATAAGGATCTAGGAAACACAGAAGGCGTGAATGTTTATGCCCAGTTAATCGACGAGGCTGAAGGTCTAGAAAAGATTGAAAACCTCCAAAGCCATGACAACACTGAAATCTATGAGAAAGCAGTGAAGATCCTCGAAACTTATTGGTTGGAGGAGGAAGATGTGCCGGTTTCATTAAATGAAGATCAATTCGAATTTGGAGGGGCCGATATATCTCTTCCATCGGGAGGATTTAACTTCAGTTGATGGGGTATGTTATTCTTCCCTTCTTTTTTATGATTATTTCCCCTCTGTTAACGACGGTTTCCTTTGAAAACTTTTGTTCTTTTGAGCACCTGTTTTATGGTGTAAATTATTTAGCATTAGGATGTGTTAAAATGGTGTTTGAGCGATGATGTAAAGCTAGTCAACCTTACCTTTGATTTAGCAAAAATGGTTTGTTGCAGTTAAAACTTGTGGTAGTTTCTTAATGTTTAATTCTTTCCAGGTTTGGCTAGCAGGTCAGTGAGTGGTTTTAAATTGGAGAAACATCCTCTTTAAACTATGTGTAGAGAGAGTTGTCATCTACTTGGGGGAGGTTTGGATTTTACATATATTTTCTTCTATTTATTGATGGAGTTGGTGTTGTATAAGTTACTTTTTCCCCTAGACTAGACATATTGGTGGTGGTGGATATATATATGTATACATGTTAATGTACAAGTCATACGTGGGCTCTCCATGACATTATTTGGTGTAAACATATACTTGTTTCC</genome_strand>
        <mrna_strand>GCTCAAACTGAATTTTGTTCATAGAGATTATCGATTATCGAGTTGAGTTCAGAATTTCGATTCACCGGAGCTATGTCACTGAGGCCGAACTCGAGAACGGAGGCTCGCCGGAGCAGGTACAAAGTTGCCGTCGATGCGGAGGAAGGACGGAGAAGAAGGGAAGATAACATGGTTGAGATCCGGAAGAATAAAAGAGAAGAGAATTTGCTTAAGAAGCGTCGTGAAGGTTTACTACAAGCTCAGCAGTTTCCTAGCACTGCTGCTGTTTCTCACCTTGATAAGAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGAGACTCTTCCTGAATTGATTGCTGGGGTTTGGTCTGATGACAGCAGTTTGCAACTTGAATGTACAACACAATTCCGGAAACTGCTTTCAATTG.............................................................................................................................AACGCAATCCTCCTATAGAGGAAGTGATACAGTCTGGGGTAGTTCCTCGCTTTGTTGAATTTCTTGCTCGAGATGACTATCCTCAACTGCAG..........................................................................................TTTGAGGCAGCGTGGGCTCTTACAAATATTGCATCTGGTACATCAGAAAACACTAAAGTTGTGATTGATTATGGTTCTGTCCCAATTTTCATCAGACTTCTAAGTTCACCAAGTGATGATGTCCGTGAACAG......................................................................................................................................................................................................................................................................................GCCGTTTGGGCTTTGGGAAATATTGCTGGTGACTCGCCCAAGTATCGTGACCTTGTGCTTGGCCATGGAGCTTTAGTGGCATTGCTGGCACAATTTAATGAGCAGGCAAAGCTATCTATGTTGAGAAATGCTACCTGGACATTGTCAAACTTTTGTAGGGGAAAACCTCAGCCACTGTTCGAGCAG.......................................................................................ACAAAAGCGGCACTCCCCACTCTTGGTCGCCTTATCCACTCAAATGATGAAGAAGTCTTGACAGATGCATGCTGGGCTCTTTCATATCTTTCTGATGGAACTAATGACAAAATCCAGGCTGTTATTGAAGCTGGAGTGTGTTCCCGCCTTGTTGAGCTGCTACT................................................................................................TCATTCTTCACCATCTGTTCTCATTCCTGCCTTGCGCACTGTTGGTAACATAGTCACAGGAGACGATATCCAAACTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATGATTGACCATCATGCTCTTCCCTGCCTTGTTAACCTGTTGACGCAAAATTACAAAAAAAGCATTAAAAAGGAAGCTTGTTGGACAATCTCGAACATTACAGCTGGTAATAGAAATCAAATTCAG.......................................................................................................................................ATTGTGATCGAGGCTGGCATTATTGCCCCTCTTGTATATCTGCTACAAAATGCTGAATTTGAGATAAAGAAAGAGGCTGCTTGGGCAATTTCAAATGCTACGTCCGGTGGAAATCATGATCAAATCAA................................................................................GTTCTTGGTGAGCCAAGGTTGTATAAAACCATTGTGTGATCTTCTGGTATGTCCTGACCCAAGAATTGTCACTGTCTGCTTGGAAGGGCTTGAGAATATTCTGAAGATTGGGGAAGCTGATAAGGATCTAGGAAACACAGAAGGCGTGAATGTTTATGCCCAGTTAATCGACGAGGCTGAAGGTCTAGAAAAGATTGAAAACCTCCAAAGCCATGACAACACTGAAATCTATGAGAAAGCAGTGAAGATCCTCGAAACTTATTGGTTGGAGGAGGAAGATGTGCCGGTTTCATTAAATGAAGATCAATTCGAATTTGGAGGGGCCGATATATCTCTTCCATCGGGAGGATTTAACTTCAGTTGATGGG.............................................................................................................................................................................................................................................GTTTGGCTAGCAGGTCAGTGAGTGGTTTTAAATTGGAGAAACATCCTCTTTAAACTATGTGTAGAGAGAGTTGTCATCTACTTGGGGGAGGTTTGGATTTTACATATATTTTCTTCTATTTATTGATGGAGTTGGTGTTGTATAAGTTACTTTTTCCCCTAGACTAGACATATTGGTGGTGGTGGATATATATATGTATACATGTTAATGTACAAGTCATACGTGGGCTCTCCATGACATTATTTGGTGTAAACATATACTTGTTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0098A22-k2LuV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E331824" ref_strand="+" ref_description="SGN-E331824 [cTOD-7-M20]">
      <seq>agagagacagtatcgagttgagttcagaatttcgattcaccggagctatgtcactgaggccgaactcgagaacggaggctcgccggagcaggtacaaagttgccgtcgatgcggaggaaggacggagaagaagggaagataacatggttgagatccggaagaataaaagagaagagaatttgcttaagaagcgtcgtgaaggtttactacaagctcagcagtttcctagcactgctgctgtttctcaccttgataagaagctggagactcttcctgaattgattgctggggtttggtctgatgacagcagtttgcaacttgaatgtacaacacaattccggaaactgctttcaattgaacgcaatcctcctatagaggaagtgatacagtctggggtagttcctcgctttgttgaatttcttgctcgagatgactatcctcaactgcagtttgaggcagcgtgggctcttacaaatattgcatctggtacatcagaaaacactaaagttgtgattgattatggttctgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0098A22-k2LuV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0098A22.1" temp_strand="+" temp_description="C06SLm0098A22.1  AC219226.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0098A22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12716" stop="16126"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13005" g_stop="13267" g_length="263"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="260" r_length="260" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13268" i_stop="15342" i_length="2075">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15343" g_stop="15439" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="357" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15440" i_stop="15564" i_length="125">
            <donor d_prob="0.880" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15565" g_stop="15656" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="449" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15657" i_stop="15746" i_length="90">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15747" g_stop="15826" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="450" r_stop="529" r_length="80" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0098A22.1" gen_strand="+" ref_id="SGN-E331824" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>532</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0098A22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E331824" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13005" e_stop="13267"/>
          <exon e_start="15343" e_stop="15439"/>
          <exon e_start="15565" e_stop="15656"/>
          <exon e_start="15747" e_stop="15826"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGATTATCGATTATCGAGTTGAGTTCAGAATTTCGATTCACCGGAGCTATGTCACTGAGGCCGAACTCGAGAACGGAGGCTCGCCGGAGCAGGTACAAAGTTGCCGTCGATGCGGAGGAAGGACGGAGAAGAAGGGAAGATAACATGGTTGAGATCCGGAAGAATAAAAGAGAAGAGAATTTGCTTAAGAAGCGTCGTGAAGGTTTACTACAAGCTCAGCAGTTTCCTAGCACTGCTGCTGTTTCTCACCTTGATAAGAAGGTATAGATTTTTTTCGTTGATTAACTTTTAGTTTCTTAGATACATATATTTTGATCGAATTTGATTGTCTGATTTGAATTTTCAAGTGCGATCAATGTTTACTCAGTGTGTGTCCTTGTGAGCTTAATTCGTTACTTCGATTTTTTCGTTTAGTTACTTGCTTCATTCAGTTCTAAACCTCAATTATGCTTAATTGATTCAATTATTTGTTTGAAGTTCAAGTGTGATCACTGTTTACTCGGTTTTCTCTTTTACGAGCTTAGTTCAGTACTTCGTATTTTTTGTTATTTAAATGCTTAATTTAGTTCTTAGATTCACTTATGCTTATTGAAATCAATTATTTGATTGAAATGCAAGTGCGTCAATGTTTACTCTCGGTGTTCGTCCTATCTAAGATAATCGGCTACTTGTATTTTTCGTTATTTAAATGCTTCATTCAGTTCTTACCTTTGCTTATCCTCATTGGATTCAATTGTTTTATCAAGACTAATTCATCTTTAGTTGCAAAGTGCAGCGCCAATTAATACCAAAAAATTAAAATATTTAGTTGCATATATATATATATATATATTATATATATATATATATAAAATCAAAATCTCAATAGAAGTAGCTTTGAAGATGAAGGAGGAGGAGGAGGAAAACGAAACCAAGGAAGAAGGAAAGAAGAAATACGTTGTGGTTGGACTTTGGAGTCGCCGGAAAAGTCTGACTGGTCATTGCCTCACTAGAGAAGTCTAGTCGAGTCGATGGGTTGGAGTCAAGTTGTAGTTTACGAATGCAACTGTGCAAATTTGGAAAGAAAACCCTAAAATTTAACTTTTAAAACACTACATTTTTTTTTTGAAATAGGTAACTTTCTTTTAAAACCTTAAATTGATTGTTTTTTTTTACGAAAATACAAAAAGTGACTCCTTGGTCGCCATGGCGTTGCCTTTTGAAGATCGCCTCGCCACAAAGATAATAGGCGCTGAAGGATCGCCTTGCCTTGCCTCTTGCCATTGATGATGAGACGATTACCTTCCACGACATTGTCTCAGCCGTATGATACCGATAGTGTCATAGGAATCAGTTATTTTATTTGCATGGCAAGTTCTATCAATTTTACATGGTGTCATCATTTCCAGCTTAATTTGCTACGCGTATTAATTACTTGCTCTATTCAGTTCTTAGCCTCACTAGTCCTTATTGAATTCAATTGTTTATTTTAATTGCAAGTGCGATCAAGACTAATTCATCTTTTCTCTTTGAGCTTACTCAGCAGCGTGAATTTTTGTTAACTACTCTCAGTCTTATGATGCAGATATTGTGATCGGTTTCAGTTGCTTTAGTTGAATTGCAAGTGCTATCAATTTTTACTTTCCAGCATAATTTGCTACTTGTTTTTACCTACTTTCTCCATTCAGTTCTTAGCCTCACTAATCCTTATTGGATTCAATTGTGTATTTGAATTGCAACTGCGATCAGGACTAGTTGGTATTGATCATTTCTAGCATTTATTTTCATTAATTACTTGCTTCATTCTGTTCTTAGGCTGAATTATCCAATTCTATTTGCATTCAGTTTCTATTTGAATGGCTAGCGCGATCAATGTTTACTCAGTGTGCATTCTTTCTTCATTCAGTTCTAAGCCTCATTTTTCCTTGATGGATACAATCTTTTATTTGAATTGCTAGTGCAATCAATGGTTACTTGGTATTCATCCTTTCAAGCATAATTGGGTACTATTATTTTTTGGTAATTACCTGCTTCACTCAGTTCTTAAGGATAACTTTTTTTACTTGTTAGAGAAGCATAATGTTTTCAATAGTTAGGTATACAGTCTGCTTTGTTTCTCCCTTGTCCGCAAAGCAAAAATGACATAATCACTATTTGAAGAGTCAAAAAGGTATTTGAAAAATACTATTTAAGAAAAAGGAAGAAATCTATACACTGAAAGATTAGATTAGTTGATTTCTACTTCAAATATAATCATCCTTGCAGCTATGGAGGAGTAGCATTGCGCCAAAAATAATATCATGCTGCTCTAGCAACAAACTTATCTGATTCAATTTTATTGGTTTATAACCTTTCAGCTGGAGACTCTTCCTGAATTGATTGCTGGGGTTTGGTCTGATGACAGCAGTTTGCAACTTGAATGTACAACACAATTCCGGAAACTGCTTTCAATTGGTCAGTGTTGCTTTGCTTTTTTCCTAAATGTATTTCTGTTTGATCACCTTGACAATGAATGTTTTTCCTCTCTGTATCTTTGTGTCTTAATTAGTATGCGTGTTCACTTCTGGTTGTTTTGGCAGAACGCAATCCTCCTATAGAGGAAGTGATACAGTCTGGGGTAGTTCCTCGCTTTGTTGAATTTCTTGCTCGAGATGACTATCCTCAACTGCAGGTTTTTTTACAAAATCTATTATTTTTGTTTTTTGTTTTGCAGTTCCATCTTTATTTCTAATGTTTACATAATTGGCATTCTATAATCTAGTTTGAGGCAGCGTGGGCTCTTACAAATATTGCATCTGGTACATCAGAAAACACTAAAGTTGTGATTGATTATGGTTCTGT</genome_strand>
        <mrna_strand>AGAGA-GA-C-AGTATCGAGTTGAGTTCAGAATTTCGATTCACCGGAGCTATGTCACTGAGGCCGAACTCGAGAACGGAGGCTCGCCGGAGCAGGTACAAAGTTGCCGTCGATGCGGAGGAAGGACGGAGAAGAAGGGAAGATAACATGGTTGAGATCCGGAAGAATAAAAGAGAAGAGAATTTGCTTAAGAAGCGTCGTGAAGGTTTACTACAAGCTCAGCAGTTTCCTAGCACTGCTGCTGTTTCTCACCTTGATAAGAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGAGACTCTTCCTGAATTGATTGCTGGGGTTTGGTCTGATGACAGCAGTTTGCAACTTGAATGTACAACACAATTCCGGAAACTGCTTTCAATTG.............................................................................................................................AACGCAATCCTCCTATAGAGGAAGTGATACAGTCTGGGGTAGTTCCTCGCTTTGTTGAATTTCTTGCTCGAGATGACTATCCTCAACTGCAG..........................................................................................TTTGAGGCAGCGTGGGCTCTTACAAATATTGCATCTGGTACATCAGAAAACACTAAAGTTGTGATTGATTATGGTTCTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0098A22-k2LuV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E691240" ref_strand="+" ref_description="SGN-E691240 [LH_Ea05J14]">
      <seq>cgttattatcgagttgagttcagaatttcgattcaccggagctatgtcactgaggccgaactcgagaacggaggctcgccggagcaggtacaaagttgccgtagatgcggaggaaggacggagaagaagggaagataacatggttgagatccggaagaataaaagagaagagaatttgcttaagaagcgtcgtgaaggtttactacaagctcagcagtttcctagcactgctgctgtttctcaccttgataagaagctggagactcttcctgaattgattgctggggtttggtctgatgacagcagtttgcaacttgaatgtacaacacaattccggaaactgctttcaattgaacgcaatcctcctatagaggaagtgatacagtctggggtagttcctcgctttgttgaatttcttgctcgagatgactatcatcaactgcaggtttttttacaaaatctattatttttgttttttgttttgcagttcatctttatttctaatgttcacataattggcatcctataatctagtttgaggcagcgtgggctcttacaaatattgcgtctggtacatcagaaaacactaaagttgtgattgattatggttctgtcccaattttcatcagacttctaagttcaccaagtgatgatgtccgtgaacaggcagtttgggctttgggaaatattgctggtgactcacccaagtatcgtgaccttgtgcttggccatggagctttagcggcattgctggcacaatttaatgagcaggcaaagctatctatgttgagaaatgctacctggacattgtcaaacttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0098A22-k2LuV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0098A22.1" temp_strand="+" temp_description="C06SLm0098A22.1  AC219226.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0098A22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12716" stop="16609"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13012" g_stop="13267" g_length="256"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="256" r_length="256" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13268" i_stop="15342" i_length="2075">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15343" g_stop="15439" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="353" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15440" i_stop="15564" i_length="125">
            <donor d_prob="0.880" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15565" g_stop="15878" g_length="314"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="666" r_length="313" r_score="0.984"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15879" i_stop="16156" i_length="278">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="16157" g_stop="16309" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="667" r_stop="819" r_length="153" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0098A22.1" gen_strand="+" ref_id="SGN-E691240" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>820</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0098A22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E691240" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13012" e_stop="13267"/>
          <exon e_start="15343" e_stop="15439"/>
          <exon e_start="15565" e_stop="15878"/>
          <exon e_start="16157" e_stop="16309"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCGATTATCGAGTTGAGTTCAGAATTTCGATTCACCGGAGCTATGTCACTGAGGCCGAACTCGAGAACGGAGGCTCGCCGGAGCAGGTACAAAGTTGCCGTCGATGCGGAGGAAGGACGGAGAAGAAGGGAAGATAACATGGTTGAGATCCGGAAGAATAAAAGAGAAGAGAATTTGCTTAAGAAGCGTCGTGAAGGTTTACTACAAGCTCAGCAGTTTCCTAGCACTGCTGCTGTTTCTCACCTTGATAAGAAGGTATAGATTTTTTTCGTTGATTAACTTTTAGTTTCTTAGATACATATATTTTGATCGAATTTGATTGTCTGATTTGAATTTTCAAGTGCGATCAATGTTTACTCAGTGTGTGTCCTTGTGAGCTTAATTCGTTACTTCGATTTTTTCGTTTAGTTACTTGCTTCATTCAGTTCTAAACCTCAATTATGCTTAATTGATTCAATTATTTGTTTGAAGTTCAAGTGTGATCACTGTTTACTCGGTTTTCTCTTTTACGAGCTTAGTTCAGTACTTCGTATTTTTTGTTATTTAAATGCTTAATTTAGTTCTTAGATTCACTTATGCTTATTGAAATCAATTATTTGATTGAAATGCAAGTGCGTCAATGTTTACTCTCGGTGTTCGTCCTATCTAAGATAATCGGCTACTTGTATTTTTCGTTATTTAAATGCTTCATTCAGTTCTTACCTTTGCTTATCCTCATTGGATTCAATTGTTTTATCAAGACTAATTCATCTTTAGTTGCAAAGTGCAGCGCCAATTAATACCAAAAAATTAAAATATTTAGTTGCATATATATATATATATATATTATATATATATATATATAAAATCAAAATCTCAATAGAAGTAGCTTTGAAGATGAAGGAGGAGGAGGAGGAAAACGAAACCAAGGAAGAAGGAAAGAAGAAATACGTTGTGGTTGGACTTTGGAGTCGCCGGAAAAGTCTGACTGGTCATTGCCTCACTAGAGAAGTCTAGTCGAGTCGATGGGTTGGAGTCAAGTTGTAGTTTACGAATGCAACTGTGCAAATTTGGAAAGAAAACCCTAAAATTTAACTTTTAAAACACTACATTTTTTTTTTGAAATAGGTAACTTTCTTTTAAAACCTTAAATTGATTGTTTTTTTTTACGAAAATACAAAAAGTGACTCCTTGGTCGCCATGGCGTTGCCTTTTGAAGATCGCCTCGCCACAAAGATAATAGGCGCTGAAGGATCGCCTTGCCTTGCCTCTTGCCATTGATGATGAGACGATTACCTTCCACGACATTGTCTCAGCCGTATGATACCGATAGTGTCATAGGAATCAGTTATTTTATTTGCATGGCAAGTTCTATCAATTTTACATGGTGTCATCATTTCCAGCTTAATTTGCTACGCGTATTAATTACTTGCTCTATTCAGTTCTTAGCCTCACTAGTCCTTATTGAATTCAATTGTTTATTTTAATTGCAAGTGCGATCAAGACTAATTCATCTTTTCTCTTTGAGCTTACTCAGCAGCGTGAATTTTTGTTAACTACTCTCAGTCTTATGATGCAGATATTGTGATCGGTTTCAGTTGCTTTAGTTGAATTGCAAGTGCTATCAATTTTTACTTTCCAGCATAATTTGCTACTTGTTTTTACCTACTTTCTCCATTCAGTTCTTAGCCTCACTAATCCTTATTGGATTCAATTGTGTATTTGAATTGCAACTGCGATCAGGACTAGTTGGTATTGATCATTTCTAGCATTTATTTTCATTAATTACTTGCTTCATTCTGTTCTTAGGCTGAATTATCCAATTCTATTTGCATTCAGTTTCTATTTGAATGGCTAGCGCGATCAATGTTTACTCAGTGTGCATTCTTTCTTCATTCAGTTCTAAGCCTCATTTTTCCTTGATGGATACAATCTTTTATTTGAATTGCTAGTGCAATCAATGGTTACTTGGTATTCATCCTTTCAAGCATAATTGGGTACTATTATTTTTTGGTAATTACCTGCTTCACTCAGTTCTTAAGGATAACTTTTTTTACTTGTTAGAGAAGCATAATGTTTTCAATAGTTAGGTATACAGTCTGCTTTGTTTCTCCCTTGTCCGCAAAGCAAAAATGACATAATCACTATTTGAAGAGTCAAAAAGGTATTTGAAAAATACTATTTAAGAAAAAGGAAGAAATCTATACACTGAAAGATTAGATTAGTTGATTTCTACTTCAAATATAATCATCCTTGCAGCTATGGAGGAGTAGCATTGCGCCAAAAATAATATCATGCTGCTCTAGCAACAAACTTATCTGATTCAATTTTATTGGTTTATAACCTTTCAGCTGGAGACTCTTCCTGAATTGATTGCTGGGGTTTGGTCTGATGACAGCAGTTTGCAACTTGAATGTACAACACAATTCCGGAAACTGCTTTCAATTGGTCAGTGTTGCTTTGCTTTTTTCCTAAATGTATTTCTGTTTGATCACCTTGACAATGAATGTTTTTCCTCTCTGTATCTTTGTGTCTTAATTAGTATGCGTGTTCACTTCTGGTTGTTTTGGCAGAACGCAATCCTCCTATAGAGGAAGTGATACAGTCTGGGGTAGTTCCTCGCTTTGTTGAATTTCTTGCTCGAGATGACTATCCTCAACTGCAGGTTTTTTTACAAAATCTATTATTTTTGTTTTTTGTTTTGCAGTTCCATCTTTATTTCTAATGTTTACATAATTGGCATTCTATAATCTAGTTTGAGGCAGCGTGGGCTCTTACAAATATTGCATCTGGTACATCAGAAAACACTAAAGTTGTGATTGATTATGGTTCTGTCCCAATTTTCATCAGACTTCTAAGTTCACCAAGTGATGATGTCCGTGAACAGGTAAAACTTTATATATAAGAGGGCTAAGCTTTCATGTTTCTTCTCATAATTGTCATGATATTATGTCTATTTTTCTTAAAAAAATTGGGGTTACGGGAAGGAGTAATGGGGGAGAGAATTACAAAGTGGAAATCAAACCCTCACTGGCAAGATGAAAGTTCAAGTATTCAACCAACTTAGCTACTAAGATTCTCCTGATATTGTATGTATTATGCCAATTTATTTCTGAGAAGTTAAAAATTCTTTTATTTTGATATTTTTTTTAAAAAAATTTATAGGCCGTTTGGGCTTTGGGAAATATTGCTGGTGACTCGCCCAAGTATCGTGACCTTGTGCTTGGCCATGGAGCTTTAGTGGCATTGCTGGCACAATTTAATGAGCAGGCAAAGCTATCTATGTTGAGAAATGCTACCTGGACATTGTCAAACTTT</genome_strand>
        <mrna_strand>CGTTATTATCGAGTTGAGTTCAGAATTTCGATTCACCGGAGCTATGTCACTGAGGCCGAACTCGAGAACGGAGGCTCGCCGGAGCAGGTACAAAGTTGCCGTAGATGCGGAGGAAGGACGGAGAAGAAGGGAAGATAACATGGTTGAGATCCGGAAGAATAAAAGAGAAGAGAATTTGCTTAAGAAGCGTCGTGAAGGTTTACTACAAGCTCAGCAGTTTCCTAGCACTGCTGCTGTTTCTCACCTTGATAAGAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGAGACTCTTCCTGAATTGATTGCTGGGGTTTGGTCTGATGACAGCAGTTTGCAACTTGAATGTACAACACAATTCCGGAAACTGCTTTCAATTG.............................................................................................................................AACGCAATCCTCCTATAGAGGAAGTGATACAGTCTGGGGTAGTTCCTCGCTTTGTTGAATTTCTTGCTCGAGATGACTATCATCAACTGCAGGTTTTTTTACAAAATCTATTATTTTTGTTTTTTGTTTTGCAGTT-CATCTTTATTTCTAATGTTCACATAATTGGCATCCTATAATCTAGTTTGAGGCAGCGTGGGCTCTTACAAATATTGCGTCTGGTACATCAGAAAACACTAAAGTTGTGATTGATTATGGTTCTGTCCCAATTTTCATCAGACTTCTAAGTTCACCAAGTGATGATGTCCGTGAACAG......................................................................................................................................................................................................................................................................................GCAGTTTGGGCTTTGGGAAATATTGCTGGTGACTCACCCAAGTATCGTGACCTTGTGCTTGGCCATGGAGCTTTAGCGGCATTGCTGGCACAATTTAATGAGCAGGCAAAGCTATCTATGTTGAGAAATGCTACCTGGACATTGTCAAACTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0098A22-k2LuV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E747650" ref_strand="+" ref_description="SGN-E747650 [GI|3228369]">
      <seq>atgtcactgaggccgaactcgagaacggaggctcgccggagcaggtacaaagttgccgtcgatgcggaggaaggacggagaagaagggaagataacatggttgagatccggaagaataaaagagaagagaatttgcttaagaagcgtcgtgaaggtttactacaagctcagcagtttcctagcactgctgctgtttctcaccttgataagaagctggagactcttcctgaattgattgctggggtttggtctgatgacagcagtttgcaacttgaatgtacaacacaattccggaaactgctttcaattgaacgcaatcctcctatagaggaagtgatacagtctggggtagttcctcgctttgttgaatttcttgctcgagatgactatcctcaactgcagtttgaggcagcgtgggctcttacaaatattgcatctggtacatcagaaaacactaaagttgtgattgattatggttctgtcccaattttcatcagacttctaagttcaccaagtgatgatgtccgtgaacaggccgtttgggctttgggaaatattgctggtgactcgcccaagtatcgtgaccttgtgcttggccatggagctttagtggcattgctggcacaatttaatgagcaggcaaagctatctatgttgagaaatgctacctggacattgtcaaacttttgtaggggaaaacctcagccactgttcgagcagacaaaagcggcactccccactcttggtcgccttatccactcaaatgatgaagaagtcttgacagatgcatgctgggctctttcatatctttctgatggaactaatgacaaaatccaggctgttattgaagctggagtgtgttcccgccttgttgagctgctacttcattcttcaccatctgttctcattcctgccttgcgcactgttggtaacatagtcacaggagacgatatccaaactcaggttatgattgaccatcatgctcttccctgccttgttaacctgttgacgcaaaattacaaaaaaagcattaaaaaggaagcttgttggacaatctcgaacattacagctggtaatagaaatcaaattcagattgtgatcgaggctggcattattgcccctcttgtatatctgctacaaaatgctgaatttgagataaagaaagaggctgcttgggcaatttcaaatgctacgtccggtggaaatcatgatcaaatcaagttcttggtgagccaaggttgtataaaaccattgtgtgatcttctggtatgtcctgacccaagaattgtcactgtctgcttggaagggcttgagaatattctgaagattggggaagctgataaggatctaggaaacacagaaggcgtgaatgtttatgcccagttaatcgacgaggctgaaggtctagaaaagattgaaaacctccaaagccatgacaacactgaaatctatgagaaagcagtgaagatcctcgaaacttattggttggaggaggaagatgtgccggtttcattaaatgaagatcaattcgaatttggaggggccgatatatctcttccatcgggaggatttaacttcagttgatggggtttggctagcaggtcagtgagtggttttaaattggagaaacatcctctttaaactatgtgtagagagagttgtcatctacttgggggaggtttggattttacatatattttcttctatttattgatggagttggtgttgtataagttactttttcccctagactagacatattggtggtggtggatatatatatgtatacatgttaatgtacaagtcatacgtgggctctccatgacattatttggtgtaaacatatacttgtttccatctttttgtacccttatatggcttgtttccatctctgtaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0098A22-k2LuV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0098A22.1" temp_strand="+" temp_description="C06SLm0098A22.1  AC219226.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0098A22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12755" stop="19305"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13055" g_stop="13267" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="213" r_length="213" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13268" i_stop="15342" i_length="2075">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15343" g_stop="15439" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="310" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15440" i_stop="15564" i_length="125">
            <donor d_prob="0.880" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15565" g_stop="15656" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="402" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15657" i_stop="15746" i_length="90">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15747" g_stop="15878" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="534" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15879" i_stop="16156" i_length="278">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="16157" g_stop="16342" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="535" r_stop="720" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="16343" i_stop="16429" i_length="87">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="16430" g_stop="16593" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="721" r_stop="884" r_length="164" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="16594" i_stop="16689" i_length="96">
            <donor d_prob="0.914" d_score="1.00"/>
            <acceptor a_prob="0.500" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="16690" g_stop="16768" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="885" r_stop="963" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="16769" i_stop="17620" i_length="852">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.941" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="17621" g_stop="17749" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="964" r_stop="1092" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="17750" i_stop="17884" i_length="135">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="17885" g_stop="18012" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="1093" r_stop="1220" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="18013" i_stop="18092" i_length="80">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.763" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="18093" g_stop="18460" g_length="368"/>
          <reference_exon_boundary r_type="cDNA" r_start="1221" r_stop="1588" r_length="368" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="18461" i_stop="18697" i_length="237">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="18698" g_stop="19002" g_length="305"/>
          <reference_exon_boundary r_type="cDNA" r_start="1589" r_stop="1893" r_length="305" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1896" polyA_stop="1907"/>
      <MATCH_line gen_id="C06SLm0098A22.1" gen_strand="+" ref_id="SGN-E747650" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1893</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0098A22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E747650" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13055" e_stop="13267"/>
          <exon e_start="15343" e_stop="15439"/>
          <exon e_start="15565" e_stop="15656"/>
          <exon e_start="15747" e_stop="15878"/>
          <exon e_start="16157" e_stop="16342"/>
          <exon e_start="16430" e_stop="16593"/>
          <exon e_start="16690" e_stop="16768"/>
          <exon e_start="17621" e_stop="17749"/>
          <exon e_start="17885" e_stop="18012"/>
          <exon e_start="18093" e_stop="18460"/>
          <exon e_start="18698" e_stop="19002"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGTCACTGAGGCCGAACTCGAGAACGGAGGCTCGCCGGAGCAGGTACAAAGTTGCCGTCGATGCGGAGGAAGGACGGAGAAGAAGGGAAGATAACATGGTTGAGATCCGGAAGAATAAAAGAGAAGAGAATTTGCTTAAGAAGCGTCGTGAAGGTTTACTACAAGCTCAGCAGTTTCCTAGCACTGCTGCTGTTTCTCACCTTGATAAGAAGGTATAGATTTTTTTCGTTGATTAACTTTTAGTTTCTTAGATACATATATTTTGATCGAATTTGATTGTCTGATTTGAATTTTCAAGTGCGATCAATGTTTACTCAGTGTGTGTCCTTGTGAGCTTAATTCGTTACTTCGATTTTTTCGTTTAGTTACTTGCTTCATTCAGTTCTAAACCTCAATTATGCTTAATTGATTCAATTATTTGTTTGAAGTTCAAGTGTGATCACTGTTTACTCGGTTTTCTCTTTTACGAGCTTAGTTCAGTACTTCGTATTTTTTGTTATTTAAATGCTTAATTTAGTTCTTAGATTCACTTATGCTTATTGAAATCAATTATTTGATTGAAATGCAAGTGCGTCAATGTTTACTCTCGGTGTTCGTCCTATCTAAGATAATCGGCTACTTGTATTTTTCGTTATTTAAATGCTTCATTCAGTTCTTACCTTTGCTTATCCTCATTGGATTCAATTGTTTTATCAAGACTAATTCATCTTTAGTTGCAAAGTGCAGCGCCAATTAATACCAAAAAATTAAAATATTTAGTTGCATATATATATATATATATATTATATATATATATATATAAAATCAAAATCTCAATAGAAGTAGCTTTGAAGATGAAGGAGGAGGAGGAGGAAAACGAAACCAAGGAAGAAGGAAAGAAGAAATACGTTGTGGTTGGACTTTGGAGTCGCCGGAAAAGTCTGACTGGTCATTGCCTCACTAGAGAAGTCTAGTCGAGTCGATGGGTTGGAGTCAAGTTGTAGTTTACGAATGCAACTGTGCAAATTTGGAAAGAAAACCCTAAAATTTAACTTTTAAAACACTACATTTTTTTTTTGAAATAGGTAACTTTCTTTTAAAACCTTAAATTGATTGTTTTTTTTTACGAAAATACAAAAAGTGACTCCTTGGTCGCCATGGCGTTGCCTTTTGAAGATCGCCTCGCCACAAAGATAATAGGCGCTGAAGGATCGCCTTGCCTTGCCTCTTGCCATTGATGATGAGACGATTACCTTCCACGACATTGTCTCAGCCGTATGATACCGATAGTGTCATAGGAATCAGTTATTTTATTTGCATGGCAAGTTCTATCAATTTTACATGGTGTCATCATTTCCAGCTTAATTTGCTACGCGTATTAATTACTTGCTCTATTCAGTTCTTAGCCTCACTAGTCCTTATTGAATTCAATTGTTTATTTTAATTGCAAGTGCGATCAAGACTAATTCATCTTTTCTCTTTGAGCTTACTCAGCAGCGTGAATTTTTGTTAACTACTCTCAGTCTTATGATGCAGATATTGTGATCGGTTTCAGTTGCTTTAGTTGAATTGCAAGTGCTATCAATTTTTACTTTCCAGCATAATTTGCTACTTGTTTTTACCTACTTTCTCCATTCAGTTCTTAGCCTCACTAATCCTTATTGGATTCAATTGTGTATTTGAATTGCAACTGCGATCAGGACTAGTTGGTATTGATCATTTCTAGCATTTATTTTCATTAATTACTTGCTTCATTCTGTTCTTAGGCTGAATTATCCAATTCTATTTGCATTCAGTTTCTATTTGAATGGCTAGCGCGATCAATGTTTACTCAGTGTGCATTCTTTCTTCATTCAGTTCTAAGCCTCATTTTTCCTTGATGGATACAATCTTTTATTTGAATTGCTAGTGCAATCAATGGTTACTTGGTATTCATCCTTTCAAGCATAATTGGGTACTATTATTTTTTGGTAATTACCTGCTTCACTCAGTTCTTAAGGATAACTTTTTTTACTTGTTAGAGAAGCATAATGTTTTCAATAGTTAGGTATACAGTCTGCTTTGTTTCTCCCTTGTCCGCAAAGCAAAAATGACATAATCACTATTTGAAGAGTCAAAAAGGTATTTGAAAAATACTATTTAAGAAAAAGGAAGAAATCTATACACTGAAAGATTAGATTAGTTGATTTCTACTTCAAATATAATCATCCTTGCAGCTATGGAGGAGTAGCATTGCGCCAAAAATAATATCATGCTGCTCTAGCAACAAACTTATCTGATTCAATTTTATTGGTTTATAACCTTTCAGCTGGAGACTCTTCCTGAATTGATTGCTGGGGTTTGGTCTGATGACAGCAGTTTGCAACTTGAATGTACAACACAATTCCGGAAACTGCTTTCAATTGGTCAGTGTTGCTTTGCTTTTTTCCTAAATGTATTTCTGTTTGATCACCTTGACAATGAATGTTTTTCCTCTCTGTATCTTTGTGTCTTAATTAGTATGCGTGTTCACTTCTGGTTGTTTTGGCAGAACGCAATCCTCCTATAGAGGAAGTGATACAGTCTGGGGTAGTTCCTCGCTTTGTTGAATTTCTTGCTCGAGATGACTATCCTCAACTGCAGGTTTTTTTACAAAATCTATTATTTTTGTTTTTTGTTTTGCAGTTCCATCTTTATTTCTAATGTTTACATAATTGGCATTCTATAATCTAGTTTGAGGCAGCGTGGGCTCTTACAAATATTGCATCTGGTACATCAGAAAACACTAAAGTTGTGATTGATTATGGTTCTGTCCCAATTTTCATCAGACTTCTAAGTTCACCAAGTGATGATGTCCGTGAACAGGTAAAACTTTATATATAAGAGGGCTAAGCTTTCATGTTTCTTCTCATAATTGTCATGATATTATGTCTATTTTTCTTAAAAAAATTGGGGTTACGGGAAGGAGTAATGGGGGAGAGAATTACAAAGTGGAAATCAAACCCTCACTGGCAAGATGAAAGTTCAAGTATTCAACCAACTTAGCTACTAAGATTCTCCTGATATTGTATGTATTATGCCAATTTATTTCTGAGAAGTTAAAAATTCTTTTATTTTGATATTTTTTTTAAAAAAATTTATAGGCCGTTTGGGCTTTGGGAAATATTGCTGGTGACTCGCCCAAGTATCGTGACCTTGTGCTTGGCCATGGAGCTTTAGTGGCATTGCTGGCACAATTTAATGAGCAGGCAAAGCTATCTATGTTGAGAAATGCTACCTGGACATTGTCAAACTTTTGTAGGGGAAAACCTCAGCCACTGTTCGAGCAGGTTTGACTTTAAAGATAAAGTTTGTTTGATCTTTTCAGATATTTATATTACTTTTAAAGGTTATGCCTTTTAAAATTCATCGCGCAGACAAAAGCGGCACTCCCCACTCTTGGTCGCCTTATCCACTCAAATGATGAAGAAGTCTTGACAGATGCATGCTGGGCTCTTTCATATCTTTCTGATGGAACTAATGACAAAATCCAGGCTGTTATTGAAGCTGGAGTGTGTTCCCGCCTTGTTGAGCTGCTACTGTGAGTTATAGATCTTACTTTTGAGGGTTTGTCTTAGGCTTTCGATATGTTAAAATCATAAGTTTCTTACTCCCTTCATCTTTTTTTCGTGAGTAGTCATTCTTCACCATCTGTTCTCATTCCTGCCTTGCGCACTGTTGGTAACATAGTCACAGGAGACGATATCCAAACTCAGGTATTTATCATCCTCCCAGCCAATTTTTCATGTTTGATTTTTTTTTTTCGTTTTTCCCTCTTCTCATCCTTAATTGAGTCTTTGTGTAAACATGAATTCTCAATATCTAATCCATCAGTACGTCAGATGTATCTTCATCTTTTTGTTTAGGTAAATTATGCTGGTCAGATAAAAATACTTAAAAATCTAGCTTTCGTCAATGATAATTCAATTTTTGTAATAATTCTGATAGTCAACTATATCATAATCATGATATGAAAGAAAAGAGGAGTAAAGATTGGCTAGTCAATTAGTTCTCATTAAGTTTCTACCATGTTTAAGAGAGGTTACTCACGGAAGTCTTCGCTAATTCATCCGTGTACTGCAGTCAGTCTTCAGTTATCACGTTTGCCTACCTGAGTAGGGGGTTAGTGGTGTTTGGCTGTTATGATTATTTTTAGAATAAACTTTCCATTGCCGAACTGCTCACTGGGATAGTGTTGCACCACATATTTACGGAACAAATGGTGTTACATCTCTATTTGTTCTTAGGAGAAAAAATAGGGAGAGGAAATTTTCTAAATTTTTGGTCCCTGAAACGTAAGACGAGTGAAATTGAGTTAACTTCTTTGCTATCCTGTTATTCTCCTACCAAGGTAGGGAAGCTCTAATAGGGTAGTATTGTACGGCAGAGGCATGCTCTCTTTCAGTGAGGAGTTATTTGCAACCTTCCATTTTTGTTACCTCTCAGACGTAGTGGAAATAAAATGGACATAAAAACTACATCTTTTGGTTGTTGAAGCAAATTATGTCCTACCTAATTTATCAGCTGGAATCTTTTTTGGTGGACATTGATGAATCTATATTGTTTAGGTTATGATTGACCATCATGCTCTTCCCTGCCTTGTTAACCTGTTGACGCAAAATTACAAAAAAAGCATTAAAAAGGAAGCTTGTTGGACAATCTCGAACATTACAGCTGGTAATAGAAATCAAATTCAGGTATGTTGTATGGTAATTGACAATTTGTGCTTCTTTATCAATTGACAGAGAACTGAAAATAAGTGAAGAAAGAGAACCTTTGCAAGATGATTCAGTTTTGTATAATGATACTGAAAGGGGTTTTAATTGAAATAGATTGTGATCGAGGCTGGCATTATTGCCCCTCTTGTATATCTGCTACAAAATGCTGAATTTGAGATAAAGAAAGAGGCTGCTTGGGCAATTTCAAATGCTACGTCCGGTGGAAATCATGATCAAATCAAGTATGGTTCCTTTAGCATATTCAGTTTCATCTGCTTAACCTTACATCTAGTTTGAAGCTCACATGTAAATTGATTTCTAGGTTCTTGGTGAGCCAAGGTTGTATAAAACCATTGTGTGATCTTCTGGTATGTCCTGACCCAAGAATTGTCACTGTCTGCTTGGAAGGGCTTGAGAATATTCTGAAGATTGGGGAAGCTGATAAGGATCTAGGAAACACAGAAGGCGTGAATGTTTATGCCCAGTTAATCGACGAGGCTGAAGGTCTAGAAAAGATTGAAAACCTCCAAAGCCATGACAACACTGAAATCTATGAGAAAGCAGTGAAGATCCTCGAAACTTATTGGTTGGAGGAGGAAGATGTGCCGGTTTCATTAAATGAAGATCAATTCGAATTTGGAGGGGCCGATATATCTCTTCCATCGGGAGGATTTAACTTCAGTTGATGGGGTATGTTATTCTTCCCTTCTTTTTTATGATTATTTCCCCTCTGTTAACGACGGTTTCCTTTGAAAACTTTTGTTCTTTTGAGCACCTGTTTTATGGTGTAAATTATTTAGCATTAGGATGTGTTAAAATGGTGTTTGAGCGATGATGTAAAGCTAGTCAACCTTACCTTTGATTTAGCAAAAATGGTTTGTTGCAGTTAAAACTTGTGGTAGTTTCTTAATGTTTAATTCTTTCCAGGTTTGGCTAGCAGGTCAGTGAGTGGTTTTAAATTGGAGAAACATCCTCTTTAAACTATGTGTAGAGAGAGTTGTCATCTACTTGGGGGAGGTTTGGATTTTACATATATTTTCTTCTATTTATTGATGGAGTTGGTGTTGTATAAGTTACTTTTTCCCCTAGACTAGACATATTGGTGGTGGTGGATATATATATGTATACATGTTAATGTACAAGTCATACGTGGGCTCTCCATGACATTATTTGGTGTAAACATATACTTGTTTCCATCTTTTTGTACCCTTATATGGCTTGTTTCCATCTCT</genome_strand>
        <mrna_strand>ATGTCACTGAGGCCGAACTCGAGAACGGAGGCTCGCCGGAGCAGGTACAAAGTTGCCGTCGATGCGGAGGAAGGACGGAGAAGAAGGGAAGATAACATGGTTGAGATCCGGAAGAATAAAAGAGAAGAGAATTTGCTTAAGAAGCGTCGTGAAGGTTTACTACAAGCTCAGCAGTTTCCTAGCACTGCTGCTGTTTCTCACCTTGATAAGAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGAGACTCTTCCTGAATTGATTGCTGGGGTTTGGTCTGATGACAGCAGTTTGCAACTTGAATGTACAACACAATTCCGGAAACTGCTTTCAATTG.............................................................................................................................AACGCAATCCTCCTATAGAGGAAGTGATACAGTCTGGGGTAGTTCCTCGCTTTGTTGAATTTCTTGCTCGAGATGACTATCCTCAACTGCAG..........................................................................................TTTGAGGCAGCGTGGGCTCTTACAAATATTGCATCTGGTACATCAGAAAACACTAAAGTTGTGATTGATTATGGTTCTGTCCCAATTTTCATCAGACTTCTAAGTTCACCAAGTGATGATGTCCGTGAACAG......................................................................................................................................................................................................................................................................................GCCGTTTGGGCTTTGGGAAATATTGCTGGTGACTCGCCCAAGTATCGTGACCTTGTGCTTGGCCATGGAGCTTTAGTGGCATTGCTGGCACAATTTAATGAGCAGGCAAAGCTATCTATGTTGAGAAATGCTACCTGGACATTGTCAAACTTTTGTAGGGGAAAACCTCAGCCACTGTTCGAGCAG.......................................................................................ACAAAAGCGGCACTCCCCACTCTTGGTCGCCTTATCCACTCAAATGATGAAGAAGTCTTGACAGATGCATGCTGGGCTCTTTCATATCTTTCTGATGGAACTAATGACAAAATCCAGGCTGTTATTGAAGCTGGAGTGTGTTCCCGCCTTGTTGAGCTGCTACT................................................................................................TCATTCTTCACCATCTGTTCTCATTCCTGCCTTGCGCACTGTTGGTAACATAGTCACAGGAGACGATATCCAAACTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATGATTGACCATCATGCTCTTCCCTGCCTTGTTAACCTGTTGACGCAAAATTACAAAAAAAGCATTAAAAAGGAAGCTTGTTGGACAATCTCGAACATTACAGCTGGTAATAGAAATCAAATTCAG.......................................................................................................................................ATTGTGATCGAGGCTGGCATTATTGCCCCTCTTGTATATCTGCTACAAAATGCTGAATTTGAGATAAAGAAAGAGGCTGCTTGGGCAATTTCAAATGCTACGTCCGGTGGAAATCATGATCAAATCAA................................................................................GTTCTTGGTGAGCCAAGGTTGTATAAAACCATTGTGTGATCTTCTGGTATGTCCTGACCCAAGAATTGTCACTGTCTGCTTGGAAGGGCTTGAGAATATTCTGAAGATTGGGGAAGCTGATAAGGATCTAGGAAACACAGAAGGCGTGAATGTTTATGCCCAGTTAATCGACGAGGCTGAAGGTCTAGAAAAGATTGAAAACCTCCAAAGCCATGACAACACTGAAATCTATGAGAAAGCAGTGAAGATCCTCGAAACTTATTGGTTGGAGGAGGAAGATGTGCCGGTTTCATTAAATGAAGATCAATTCGAATTTGGAGGGGCCGATATATCTCTTCCATCGGGAGGATTTAACTTCAGTTGATGGG.............................................................................................................................................................................................................................................GTTTGGCTAGCAGGTCAGTGAGTGGTTTTAAATTGGAGAAACATCCTCTTTAAACTATGTGTAGAGAGAGTTGTCATCTACTTGGGGGAGGTTTGGATTTTACATATATTTTCTTCTATTTATTGATGGAGTTGGTGTTGTATAAGTTACTTTTTCCCCTAGACTAGACATATTGGTGGTGGTGGATATATATATGTATACATGTTAATGTACAAGTCATACGTGGGCTCTCCATGACATTATTTGGTGTAAACATATACTTGTTTCCATCTTTTTGTACCCTTATATGGCTTGTTTCCATCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0098A22-k2LuV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E345253" ref_strand="+" ref_description="SGN-E345253 [cTOF-13-B15]">
      <seq>aattgattgctggggtttggtctgatgacagcagtttgcaacttgaatgtacaacacaattccggaaactgctttcaattgaacgcaatcctcctatagaggaagtgatacagtctggggtagttcctcgctttgttgaatttcttgctcgagatgactatcctcaactgcagtttgaggcagcgtgggctcttacaaatattgcatctggtacatcagaaaacactaaagttgtgattgattatggttctgtcccaattttcatcagacttctaagttcaccaagtgatgatgtccgtgaacaggccgtttgggctttgggaaatattgctggtgactcgcccaagtatcgtgaccttgtgcttggccatggagctttagtggcattgctggcacaatttaatgagcaggcaaagctatctatgttgagaaatgctacctggacattgtcaaacttttgtaggggaaaacctcagccactgttcgagcagacaaaagcggcactccccactcttggtcgccttatccactcaaatgatgaagaagtcttgacagatgcatgctgggctcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0098A22-k2LuV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0098A22.1" temp_strand="+" temp_description="C06SLm0098A22.1  AC219226.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0098A22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="15059" stop="16811"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15359" g_stop="15439" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="81" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15440" i_stop="15564" i_length="125">
            <donor d_prob="0.880" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15565" g_stop="15656" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="173" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15657" i_stop="15746" i_length="90">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15747" g_stop="15878" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="305" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15879" i_stop="16156" i_length="278">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="16157" g_stop="16342" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="491" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="16343" i_stop="16429" i_length="87">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="16430" g_stop="16511" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="492" r_stop="573" r_length="82" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0098A22.1" gen_strand="+" ref_id="SGN-E345253" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>573</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0098A22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E345253" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15359" e_stop="15439"/>
          <exon e_start="15565" e_stop="15656"/>
          <exon e_start="15747" e_stop="15878"/>
          <exon e_start="16157" e_stop="16342"/>
          <exon e_start="16430" e_stop="16511"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTGATTGCTGGGGTTTGGTCTGATGACAGCAGTTTGCAACTTGAATGTACAACACAATTCCGGAAACTGCTTTCAATTGGTCAGTGTTGCTTTGCTTTTTTCCTAAATGTATTTCTGTTTGATCACCTTGACAATGAATGTTTTTCCTCTCTGTATCTTTGTGTCTTAATTAGTATGCGTGTTCACTTCTGGTTGTTTTGGCAGAACGCAATCCTCCTATAGAGGAAGTGATACAGTCTGGGGTAGTTCCTCGCTTTGTTGAATTTCTTGCTCGAGATGACTATCCTCAACTGCAGGTTTTTTTACAAAATCTATTATTTTTGTTTTTTGTTTTGCAGTTCCATCTTTATTTCTAATGTTTACATAATTGGCATTCTATAATCTAGTTTGAGGCAGCGTGGGCTCTTACAAATATTGCATCTGGTACATCAGAAAACACTAAAGTTGTGATTGATTATGGTTCTGTCCCAATTTTCATCAGACTTCTAAGTTCACCAAGTGATGATGTCCGTGAACAGGTAAAACTTTATATATAAGAGGGCTAAGCTTTCATGTTTCTTCTCATAATTGTCATGATATTATGTCTATTTTTCTTAAAAAAATTGGGGTTACGGGAAGGAGTAATGGGGGAGAGAATTACAAAGTGGAAATCAAACCCTCACTGGCAAGATGAAAGTTCAAGTATTCAACCAACTTAGCTACTAAGATTCTCCTGATATTGTATGTATTATGCCAATTTATTTCTGAGAAGTTAAAAATTCTTTTATTTTGATATTTTTTTTAAAAAAATTTATAGGCCGTTTGGGCTTTGGGAAATATTGCTGGTGACTCGCCCAAGTATCGTGACCTTGTGCTTGGCCATGGAGCTTTAGTGGCATTGCTGGCACAATTTAATGAGCAGGCAAAGCTATCTATGTTGAGAAATGCTACCTGGACATTGTCAAACTTTTGTAGGGGAAAACCTCAGCCACTGTTCGAGCAGGTTTGACTTTAAAGATAAAGTTTGTTTGATCTTTTCAGATATTTATATTACTTTTAAAGGTTATGCCTTTTAAAATTCATCGCGCAGACAAAAGCGGCACTCCCCACTCTTGGTCGCCTTATCCACTCAAATGATGAAGAAGTCTTGACAGATGCATGCTGGGCTCTTT</genome_strand>
        <mrna_strand>AATTGATTGCTGGGGTTTGGTCTGATGACAGCAGTTTGCAACTTGAATGTACAACACAATTCCGGAAACTGCTTTCAATTG.............................................................................................................................AACGCAATCCTCCTATAGAGGAAGTGATACAGTCTGGGGTAGTTCCTCGCTTTGTTGAATTTCTTGCTCGAGATGACTATCCTCAACTGCAG..........................................................................................TTTGAGGCAGCGTGGGCTCTTACAAATATTGCATCTGGTACATCAGAAAACACTAAAGTTGTGATTGATTATGGTTCTGTCCCAATTTTCATCAGACTTCTAAGTTCACCAAGTGATGATGTCCGTGAACAG......................................................................................................................................................................................................................................................................................GCCGTTTGGGCTTTGGGAAATATTGCTGGTGACTCGCCCAAGTATCGTGACCTTGTGCTTGGCCATGGAGCTTTAGTGGCATTGCTGGCACAATTTAATGAGCAGGCAAAGCTATCTATGTTGAGAAATGCTACCTGGACATTGTCAAACTTTTGTAGGGGAAAACCTCAGCCACTGTTCGAGCAG.......................................................................................ACAAAAGCGGCACTCCCCACTCTTGGTCGCCTTATCCACTCAAATGATGAAGAAGTCTTGACAGATGCATGCTGGGCTCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0098A22-k2LuV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E245891" ref_strand="+" ref_description="SGN-E245891 [cLEF-51-I22]">
      <seq>agtttgcaacttgaatgtacaacacaattccggaaactgctttcaattgaacgcaatcctcctatagaggaagtgatacagtctggggtagttcctcgctttgttgaatttcttgctcgagatgactatcctcaactgcagtttgaggcagcgtgggctcttacaaatattgcatctggtacatcagaaaacactaaagttgtgattgattatggttctgtcccaattttcatcagacttctaagttcaccaagtgatgatgtccgtgaacaggccgtttgggctttgggaaatattgctggtgactcgcccaagtatcgtgaccttgtgcttggccatggagctttagtggcattgctggcccaatttaatgagcaggcaaagctatctatgttgagaaatgctacctggacattgtcaaacttttgtaggggaaaacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0098A22-k2LuV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0098A22.1" temp_strand="+" temp_description="C06SLm0098A22.1  AC219226.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0098A22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="15091" stop="16623"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15391" g_stop="15439" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15440" i_stop="15564" i_length="125">
            <donor d_prob="0.880" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15565" g_stop="15656" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="141" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15657" i_stop="15746" i_length="90">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15747" g_stop="15878" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="273" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15879" i_stop="16156" i_length="278">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="16157" g_stop="16323" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="440" r_length="167" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0098A22.1" gen_strand="+" ref_id="SGN-E245891" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>440</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0098A22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E245891" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15391" e_stop="15439"/>
          <exon e_start="15565" e_stop="15656"/>
          <exon e_start="15747" e_stop="15878"/>
          <exon e_start="16157" e_stop="16323"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTTGCAACTTGAATGTACAACACAATTCCGGAAACTGCTTTCAATTGGTCAGTGTTGCTTTGCTTTTTTCCTAAATGTATTTCTGTTTGATCACCTTGACAATGAATGTTTTTCCTCTCTGTATCTTTGTGTCTTAATTAGTATGCGTGTTCACTTCTGGTTGTTTTGGCAGAACGCAATCCTCCTATAGAGGAAGTGATACAGTCTGGGGTAGTTCCTCGCTTTGTTGAATTTCTTGCTCGAGATGACTATCCTCAACTGCAGGTTTTTTTACAAAATCTATTATTTTTGTTTTTTGTTTTGCAGTTCCATCTTTATTTCTAATGTTTACATAATTGGCATTCTATAATCTAGTTTGAGGCAGCGTGGGCTCTTACAAATATTGCATCTGGTACATCAGAAAACACTAAAGTTGTGATTGATTATGGTTCTGTCCCAATTTTCATCAGACTTCTAAGTTCACCAAGTGATGATGTCCGTGAACAGGTAAAACTTTATATATAAGAGGGCTAAGCTTTCATGTTTCTTCTCATAATTGTCATGATATTATGTCTATTTTTCTTAAAAAAATTGGGGTTACGGGAAGGAGTAATGGGGGAGAGAATTACAAAGTGGAAATCAAACCCTCACTGGCAAGATGAAAGTTCAAGTATTCAACCAACTTAGCTACTAAGATTCTCCTGATATTGTATGTATTATGCCAATTTATTTCTGAGAAGTTAAAAATTCTTTTATTTTGATATTTTTTTTAAAAAAATTTATAGGCCGTTTGGGCTTTGGGAAATATTGCTGGTGACTCGCCCAAGTATCGTGACCTTGTGCTTGGCCATGGAGCTTTAGTGGCATTGCTGGCACAATTTAATGAGCAGGCAAAGCTATCTATGTTGAGAAATGCTACCTGGACATTGTCAAACTTTTGTAGGGGAAAACC</genome_strand>
        <mrna_strand>AGTTTGCAACTTGAATGTACAACACAATTCCGGAAACTGCTTTCAATTG.............................................................................................................................AACGCAATCCTCCTATAGAGGAAGTGATACAGTCTGGGGTAGTTCCTCGCTTTGTTGAATTTCTTGCTCGAGATGACTATCCTCAACTGCAG..........................................................................................TTTGAGGCAGCGTGGGCTCTTACAAATATTGCATCTGGTACATCAGAAAACACTAAAGTTGTGATTGATTATGGTTCTGTCCCAATTTTCATCAGACTTCTAAGTTCACCAAGTGATGATGTCCGTGAACAG......................................................................................................................................................................................................................................................................................GCCGTTTGGGCTTTGGGAAATATTGCTGGTGACTCGCCCAAGTATCGTGACCTTGTGCTTGGCCATGGAGCTTTAGTGGCATTGCTGGCCCAATTTAATGAGCAGGCAAAGCTATCTATGTTGAGAAATGCTACCTGGACATTGTCAAACTTTTGTAGGGGAAAACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0098A22-k2LuV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E271316" ref_strand="+" ref_description="SGN-E271316 [cLEM-5-H14]">
      <seq>tgactatcctcaactgcagtttgaggcagcgtgggctcttacaaatattgcatctggtacatcagaaaacactaaagttgtgattgattatggttctgtcccaattttcatcagacttctaagttcaccaagtgatgatgtccgtgaacaggccgtttgggctttgggaaatattgctggtgactcgcccaagtatcgtgaccttgtgcttggccatggagctttagtggcattgctggcacaatttaatgagcaggcaaagctatctatgttgagaaatgctacctggacattgtcaaacttttgtaggggaaaacctcagccactgttcgagcagacaaaagcggcactccccactcttggtcgccttatccactcaaatgatgaagaagtcttgacagatgcatgctgggctctttcatatctttctgatggaactaatgacaaaatccaggctgttattgaagctggagtgtgttcccgccttgttgagctgctacttcattcttcaccatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0098A22-k2LuV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0098A22.1" temp_strand="+" temp_description="C06SLm0098A22.1  AC219226.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0098A22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="15338" stop="16912"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15638" g_stop="15656" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="19" r_length="19" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15657" i_stop="15746" i_length="90">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15747" g_stop="15878" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="151" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15879" i_stop="16156" i_length="278">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16157" g_stop="16342" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="337" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16343" i_stop="16429" i_length="87">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="16430" g_stop="16593" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="501" r_length="164" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="16594" i_stop="16689" i_length="96">
            <donor d_prob="0.914" d_score="1.00"/>
            <acceptor a_prob="0.500" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="16690" g_stop="16705" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="502" r_stop="517" r_length="16" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0098A22.1" gen_strand="+" ref_id="SGN-E271316" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>517</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0098A22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E271316" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15638" e_stop="15656"/>
          <exon e_start="15747" e_stop="15878"/>
          <exon e_start="16157" e_stop="16342"/>
          <exon e_start="16430" e_stop="16593"/>
          <exon e_start="16690" e_stop="16705"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGACTATCCTCAACTGCAGGTTTTTTTACAAAATCTATTATTTTTGTTTTTTGTTTTGCAGTTCCATCTTTATTTCTAATGTTTACATAATTGGCATTCTATAATCTAGTTTGAGGCAGCGTGGGCTCTTACAAATATTGCATCTGGTACATCAGAAAACACTAAAGTTGTGATTGATTATGGTTCTGTCCCAATTTTCATCAGACTTCTAAGTTCACCAAGTGATGATGTCCGTGAACAGGTAAAACTTTATATATAAGAGGGCTAAGCTTTCATGTTTCTTCTCATAATTGTCATGATATTATGTCTATTTTTCTTAAAAAAATTGGGGTTACGGGAAGGAGTAATGGGGGAGAGAATTACAAAGTGGAAATCAAACCCTCACTGGCAAGATGAAAGTTCAAGTATTCAACCAACTTAGCTACTAAGATTCTCCTGATATTGTATGTATTATGCCAATTTATTTCTGAGAAGTTAAAAATTCTTTTATTTTGATATTTTTTTTAAAAAAATTTATAGGCCGTTTGGGCTTTGGGAAATATTGCTGGTGACTCGCCCAAGTATCGTGACCTTGTGCTTGGCCATGGAGCTTTAGTGGCATTGCTGGCACAATTTAATGAGCAGGCAAAGCTATCTATGTTGAGAAATGCTACCTGGACATTGTCAAACTTTTGTAGGGGAAAACCTCAGCCACTGTTCGAGCAGGTTTGACTTTAAAGATAAAGTTTGTTTGATCTTTTCAGATATTTATATTACTTTTAAAGGTTATGCCTTTTAAAATTCATCGCGCAGACAAAAGCGGCACTCCCCACTCTTGGTCGCCTTATCCACTCAAATGATGAAGAAGTCTTGACAGATGCATGCTGGGCTCTTTCATATCTTTCTGATGGAACTAATGACAAAATCCAGGCTGTTATTGAAGCTGGAGTGTGTTCCCGCCTTGTTGAGCTGCTACTGTGAGTTATAGATCTTACTTTTGAGGGTTTGTCTTAGGCTTTCGATATGTTAAAATCATAAGTTTCTTACTCCCTTCATCTTTTTTTCGTGAGTAGTCATTCTTCACCATCT</genome_strand>
        <mrna_strand>TGACTATCCTCAACTGCAG..........................................................................................TTTGAGGCAGCGTGGGCTCTTACAAATATTGCATCTGGTACATCAGAAAACACTAAAGTTGTGATTGATTATGGTTCTGTCCCAATTTTCATCAGACTTCTAAGTTCACCAAGTGATGATGTCCGTGAACAG......................................................................................................................................................................................................................................................................................GCCGTTTGGGCTTTGGGAAATATTGCTGGTGACTCGCCCAAGTATCGTGACCTTGTGCTTGGCCATGGAGCTTTAGTGGCATTGCTGGCACAATTTAATGAGCAGGCAAAGCTATCTATGTTGAGAAATGCTACCTGGACATTGTCAAACTTTTGTAGGGGAAAACCTCAGCCACTGTTCGAGCAG.......................................................................................ACAAAAGCGGCACTCCCCACTCTTGGTCGCCTTATCCACTCAAATGATGAAGAAGTCTTGACAGATGCATGCTGGGCTCTTTCATATCTTTCTGATGGAACTAATGACAAAATCCAGGCTGTTATTGAAGCTGGAGTGTGTTCCCGCCTTGTTGAGCTGCTACT................................................................................................TCATTCTTCACCATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0098A22-k2LuV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E207706" ref_strand="+" ref_description="SGN-E207706 [cLEC-32-C13]">
      <seq>ctcttacaaatattgcatctggtacatcagaaaacactaaagttgtgattgattatggttctgtcccaattttcatcagacttctaagttcaccaagtgatgatgtccgtgaacaggccgtttgggctttgggaaatattgctggtgactcgcccaagtatcgtgaccttgtgcttggccatggagctttagtggcattgctggcacaatttaatgagcaggcaaagctatctatgttgagaaatgctacctggacattgtcaaacttttgtaggggaaaacctcagccactgttcgagcagacaaaagcggcactccccactcttggtcgccttatccactcaaatgatgaagaagtcttgacagatgcatgctgggctctttcatatctttctgatggaactaatgacaaaatccaggctgttattgaagctgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0098A22-k2LuV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0098A22.1" temp_strand="+" temp_description="C06SLm0098A22.1  AC219226.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0098A22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="15463" stop="16864"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15763" g_stop="15878" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="116" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15879" i_stop="16156" i_length="278">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16157" g_stop="16342" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="302" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16343" i_stop="16429" i_length="87">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16430" g_stop="16564" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="437" r_length="135" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0098A22.1" gen_strand="+" ref_id="SGN-E207706" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>437</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0098A22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E207706" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15763" e_stop="15878"/>
          <exon e_start="16157" e_stop="16342"/>
          <exon e_start="16430" e_stop="16564"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTACAAATATTGCATCTGGTACATCAGAAAACACTAAAGTTGTGATTGATTATGGTTCTGTCCCAATTTTCATCAGACTTCTAAGTTCACCAAGTGATGATGTCCGTGAACAGGTAAAACTTTATATATAAGAGGGCTAAGCTTTCATGTTTCTTCTCATAATTGTCATGATATTATGTCTATTTTTCTTAAAAAAATTGGGGTTACGGGAAGGAGTAATGGGGGAGAGAATTACAAAGTGGAAATCAAACCCTCACTGGCAAGATGAAAGTTCAAGTATTCAACCAACTTAGCTACTAAGATTCTCCTGATATTGTATGTATTATGCCAATTTATTTCTGAGAAGTTAAAAATTCTTTTATTTTGATATTTTTTTTAAAAAAATTTATAGGCCGTTTGGGCTTTGGGAAATATTGCTGGTGACTCGCCCAAGTATCGTGACCTTGTGCTTGGCCATGGAGCTTTAGTGGCATTGCTGGCACAATTTAATGAGCAGGCAAAGCTATCTATGTTGAGAAATGCTACCTGGACATTGTCAAACTTTTGTAGGGGAAAACCTCAGCCACTGTTCGAGCAGGTTTGACTTTAAAGATAAAGTTTGTTTGATCTTTTCAGATATTTATATTACTTTTAAAGGTTATGCCTTTTAAAATTCATCGCGCAGACAAAAGCGGCACTCCCCACTCTTGGTCGCCTTATCCACTCAAATGATGAAGAAGTCTTGACAGATGCATGCTGGGCTCTTTCATATCTTTCTGATGGAACTAATGACAAAATCCAGGCTGTTATTGAAGCTGGA</genome_strand>
        <mrna_strand>CTCTTACAAATATTGCATCTGGTACATCAGAAAACACTAAAGTTGTGATTGATTATGGTTCTGTCCCAATTTTCATCAGACTTCTAAGTTCACCAAGTGATGATGTCCGTGAACAG......................................................................................................................................................................................................................................................................................GCCGTTTGGGCTTTGGGAAATATTGCTGGTGACTCGCCCAAGTATCGTGACCTTGTGCTTGGCCATGGAGCTTTAGTGGCATTGCTGGCACAATTTAATGAGCAGGCAAAGCTATCTATGTTGAGAAATGCTACCTGGACATTGTCAAACTTTTGTAGGGGAAAACCTCAGCCACTGTTCGAGCAG.......................................................................................ACAAAAGCGGCACTCCCCACTCTTGGTCGCCTTATCCACTCAAATGATGAAGAAGTCTTGACAGATGCATGCTGGGCTCTTTCATATCTTTCTGATGGAACTAATGACAAAATCCAGGCTGTTATTGAAGCTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0098A22-k2LuV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E544736" ref_strand="+" ref_description="SGN-E544736 [TUS-67-D14]">
      <seq>acgatatccaaactcaggttatgattgaccatcatgctcttccctgccttgttaacctgttgacgcataattacaaaaaaagcattaaaaaggaagcttgttggacaatctcaaacattacagctggtaatagaaatcaaattcagattgtgatcgaggctggcattattgcccctcttgtatatctgctacaaaatgctgaatttgagataaagaaagaggctgcttgagcaatttcaaatgctacgtccggtggaaatcatgatcaaatcaagttcttggtgagccaaggttgtataaaaccattgtgtgatcttctggtatgtcctgacccaagaattgtcactgtctgcttggaagggcttgagaatattctgaagattggggaagctgataaggatctacgaaacacagaacgcgtgaatgtttatgcccacttaatcgacgaggctgaaggtctagaaaagattgaaaacctccaaagccatgactacactgaaatctatgataaagcagtgaagatcctcgaaacttattggttggaggatgaagatgtgcccgtttcattacatgacgatcaattcgaatttggatgggccgatatatctcttccatcgggaggatttaacttcaattgatggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0098A22-k2LuV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0098A22.1" temp_strand="+" temp_description="C06SLm0098A22.1  AC219226.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0098A22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="16452" stop="18760"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16752" g_stop="16768" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="17" r_length="17" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16769" i_stop="17620" i_length="852">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.941" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17621" g_stop="17749" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="146" r_length="129" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17750" i_stop="17884" i_length="135">
            <donor d_prob="0.969" d_score="0.98"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17885" g_stop="18012" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="274" r_length="128" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="18013" i_stop="18092" i_length="80">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.763" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="18093" g_stop="18460" g_length="368"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="642" r_length="368" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0098A22.1" gen_strand="+" ref_id="SGN-E544736" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>642</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0098A22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E544736" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16752" e_stop="16768"/>
          <exon e_start="17621" e_stop="17749"/>
          <exon e_start="17885" e_stop="18012"/>
          <exon e_start="18093" e_stop="18460"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGATATCCAAACTCAGGTATTTATCATCCTCCCAGCCAATTTTTCATGTTTGATTTTTTTTTTTCGTTTTTCCCTCTTCTCATCCTTAATTGAGTCTTTGTGTAAACATGAATTCTCAATATCTAATCCATCAGTACGTCAGATGTATCTTCATCTTTTTGTTTAGGTAAATTATGCTGGTCAGATAAAAATACTTAAAAATCTAGCTTTCGTCAATGATAATTCAATTTTTGTAATAATTCTGATAGTCAACTATATCATAATCATGATATGAAAGAAAAGAGGAGTAAAGATTGGCTAGTCAATTAGTTCTCATTAAGTTTCTACCATGTTTAAGAGAGGTTACTCACGGAAGTCTTCGCTAATTCATCCGTGTACTGCAGTCAGTCTTCAGTTATCACGTTTGCCTACCTGAGTAGGGGGTTAGTGGTGTTTGGCTGTTATGATTATTTTTAGAATAAACTTTCCATTGCCGAACTGCTCACTGGGATAGTGTTGCACCACATATTTACGGAACAAATGGTGTTACATCTCTATTTGTTCTTAGGAGAAAAAATAGGGAGAGGAAATTTTCTAAATTTTTGGTCCCTGAAACGTAAGACGAGTGAAATTGAGTTAACTTCTTTGCTATCCTGTTATTCTCCTACCAAGGTAGGGAAGCTCTAATAGGGTAGTATTGTACGGCAGAGGCATGCTCTCTTTCAGTGAGGAGTTATTTGCAACCTTCCATTTTTGTTACCTCTCAGACGTAGTGGAAATAAAATGGACATAAAAACTACATCTTTTGGTTGTTGAAGCAAATTATGTCCTACCTAATTTATCAGCTGGAATCTTTTTTGGTGGACATTGATGAATCTATATTGTTTAGGTTATGATTGACCATCATGCTCTTCCCTGCCTTGTTAACCTGTTGACGCAAAATTACAAAAAAAGCATTAAAAAGGAAGCTTGTTGGACAATCTCGAACATTACAGCTGGTAATAGAAATCAAATTCAGGTATGTTGTATGGTAATTGACAATTTGTGCTTCTTTATCAATTGACAGAGAACTGAAAATAAGTGAAGAAAGAGAACCTTTGCAAGATGATTCAGTTTTGTATAATGATACTGAAAGGGGTTTTAATTGAAATAGATTGTGATCGAGGCTGGCATTATTGCCCCTCTTGTATATCTGCTACAAAATGCTGAATTTGAGATAAAGAAAGAGGCTGCTTGGGCAATTTCAAATGCTACGTCCGGTGGAAATCATGATCAAATCAAGTATGGTTCCTTTAGCATATTCAGTTTCATCTGCTTAACCTTACATCTAGTTTGAAGCTCACATGTAAATTGATTTCTAGGTTCTTGGTGAGCCAAGGTTGTATAAAACCATTGTGTGATCTTCTGGTATGTCCTGACCCAAGAATTGTCACTGTCTGCTTGGAAGGGCTTGAGAATATTCTGAAGATTGGGGAAGCTGATAAGGATCTAGGAAACACAGAAGGCGTGAATGTTTATGCCCAGTTAATCGACGAGGCTGAAGGTCTAGAAAAGATTGAAAACCTCCAAAGCCATGACAACACTGAAATCTATGAGAAAGCAGTGAAGATCCTCGAAACTTATTGGTTGGAGGAGGAAGATGTGCCGGTTTCATTAAATGAAGATCAATTCGAATTTGGAGGGGCCGATATATCTCTTCCATCGGGAGGATTTAACTTCAGTTGATGGG</genome_strand>
        <mrna_strand>ACGATATCCAAACTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATGATTGACCATCATGCTCTTCCCTGCCTTGTTAACCTGTTGACGCATAATTACAAAAAAAGCATTAAAAAGGAAGCTTGTTGGACAATCTCAAACATTACAGCTGGTAATAGAAATCAAATTCAG.......................................................................................................................................ATTGTGATCGAGGCTGGCATTATTGCCCCTCTTGTATATCTGCTACAAAATGCTGAATTTGAGATAAAGAAAGAGGCTGCTTGAGCAATTTCAAATGCTACGTCCGGTGGAAATCATGATCAAATCAA................................................................................GTTCTTGGTGAGCCAAGGTTGTATAAAACCATTGTGTGATCTTCTGGTATGTCCTGACCCAAGAATTGTCACTGTCTGCTTGGAAGGGCTTGAGAATATTCTGAAGATTGGGGAAGCTGATAAGGATCTACGAAACACAGAACGCGTGAATGTTTATGCCCACTTAATCGACGAGGCTGAAGGTCTAGAAAAGATTGAAAACCTCCAAAGCCATGACTACACTGAAATCTATGATAAAGCAGTGAAGATCCTCGAAACTTATTGGTTGGAGGATGAAGATGTGCCCGTTTCATTACATGACGATCAATTCGAATTTGGATGGGCCGATATATCTCTTCCATCGGGAGGATTTAACTTCAATTGATGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0098A22-k2LuV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E306640" ref_strand="+" ref_description="SGN-E306640 [cLEY-19-D15]">
      <seq>cgatatccaaactcaggttatgattgaccatcatgctcttccctgccttgttaacctgttgacgcaaaattacaaaaaaagcattaaaaaggaagcttgttggacaatctcgaacattacagctggtaatagaaatcaaattcagattgtgatcgaggctggcattattgcccctcttgtatatctgctacaaaatgctgaatttgagataaagaaagaggctgcttgggcaatttcaaatgctacgtccggtggaaatcatgatcaaatcaagttcttggtgagccaaggttgtataaaaccattgtgtgatcttctggtatgtcctgacccaagaattgtcactgtctgcttggaagggcttgagaatattctgaagattggggaagctgataaggatctaggaaacacagaaggcgtgaatgtttatgcccagttaatcgacgaggctgaaggtctagaaaagattgaaaacctccaaagccatgacaacactgaaatctatgagaaagcagtgaagatcctcgaaacttattggttggaggaggaagatgtgccggtttcattaaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0098A22-k2LuV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0098A22.1" temp_strand="+" temp_description="C06SLm0098A22.1  AC219226.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0098A22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="16453" stop="18691"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16753" g_stop="16768" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="16" r_length="16" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16769" i_stop="17620" i_length="852">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.941" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17621" g_stop="17749" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="145" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17750" i_stop="17884" i_length="135">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17885" g_stop="18012" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="273" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="18013" i_stop="18092" i_length="80">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.763" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="18093" g_stop="18391" g_length="299"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="572" r_length="299" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0098A22.1" gen_strand="+" ref_id="SGN-E306640" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>572</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0098A22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E306640" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16753" e_stop="16768"/>
          <exon e_start="17621" e_stop="17749"/>
          <exon e_start="17885" e_stop="18012"/>
          <exon e_start="18093" e_stop="18391"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGATATCCAAACTCAGGTATTTATCATCCTCCCAGCCAATTTTTCATGTTTGATTTTTTTTTTTCGTTTTTCCCTCTTCTCATCCTTAATTGAGTCTTTGTGTAAACATGAATTCTCAATATCTAATCCATCAGTACGTCAGATGTATCTTCATCTTTTTGTTTAGGTAAATTATGCTGGTCAGATAAAAATACTTAAAAATCTAGCTTTCGTCAATGATAATTCAATTTTTGTAATAATTCTGATAGTCAACTATATCATAATCATGATATGAAAGAAAAGAGGAGTAAAGATTGGCTAGTCAATTAGTTCTCATTAAGTTTCTACCATGTTTAAGAGAGGTTACTCACGGAAGTCTTCGCTAATTCATCCGTGTACTGCAGTCAGTCTTCAGTTATCACGTTTGCCTACCTGAGTAGGGGGTTAGTGGTGTTTGGCTGTTATGATTATTTTTAGAATAAACTTTCCATTGCCGAACTGCTCACTGGGATAGTGTTGCACCACATATTTACGGAACAAATGGTGTTACATCTCTATTTGTTCTTAGGAGAAAAAATAGGGAGAGGAAATTTTCTAAATTTTTGGTCCCTGAAACGTAAGACGAGTGAAATTGAGTTAACTTCTTTGCTATCCTGTTATTCTCCTACCAAGGTAGGGAAGCTCTAATAGGGTAGTATTGTACGGCAGAGGCATGCTCTCTTTCAGTGAGGAGTTATTTGCAACCTTCCATTTTTGTTACCTCTCAGACGTAGTGGAAATAAAATGGACATAAAAACTACATCTTTTGGTTGTTGAAGCAAATTATGTCCTACCTAATTTATCAGCTGGAATCTTTTTTGGTGGACATTGATGAATCTATATTGTTTAGGTTATGATTGACCATCATGCTCTTCCCTGCCTTGTTAACCTGTTGACGCAAAATTACAAAAAAAGCATTAAAAAGGAAGCTTGTTGGACAATCTCGAACATTACAGCTGGTAATAGAAATCAAATTCAGGTATGTTGTATGGTAATTGACAATTTGTGCTTCTTTATCAATTGACAGAGAACTGAAAATAAGTGAAGAAAGAGAACCTTTGCAAGATGATTCAGTTTTGTATAATGATACTGAAAGGGGTTTTAATTGAAATAGATTGTGATCGAGGCTGGCATTATTGCCCCTCTTGTATATCTGCTACAAAATGCTGAATTTGAGATAAAGAAAGAGGCTGCTTGGGCAATTTCAAATGCTACGTCCGGTGGAAATCATGATCAAATCAAGTATGGTTCCTTTAGCATATTCAGTTTCATCTGCTTAACCTTACATCTAGTTTGAAGCTCACATGTAAATTGATTTCTAGGTTCTTGGTGAGCCAAGGTTGTATAAAACCATTGTGTGATCTTCTGGTATGTCCTGACCCAAGAATTGTCACTGTCTGCTTGGAAGGGCTTGAGAATATTCTGAAGATTGGGGAAGCTGATAAGGATCTAGGAAACACAGAAGGCGTGAATGTTTATGCCCAGTTAATCGACGAGGCTGAAGGTCTAGAAAAGATTGAAAACCTCCAAAGCCATGACAACACTGAAATCTATGAGAAAGCAGTGAAGATCCTCGAAACTTATTGGTTGGAGGAGGAAGATGTGCCGGTTTCATTAAATG</genome_strand>
        <mrna_strand>CGATATCCAAACTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATGATTGACCATCATGCTCTTCCCTGCCTTGTTAACCTGTTGACGCAAAATTACAAAAAAAGCATTAAAAAGGAAGCTTGTTGGACAATCTCGAACATTACAGCTGGTAATAGAAATCAAATTCAG.......................................................................................................................................ATTGTGATCGAGGCTGGCATTATTGCCCCTCTTGTATATCTGCTACAAAATGCTGAATTTGAGATAAAGAAAGAGGCTGCTTGGGCAATTTCAAATGCTACGTCCGGTGGAAATCATGATCAAATCAA................................................................................GTTCTTGGTGAGCCAAGGTTGTATAAAACCATTGTGTGATCTTCTGGTATGTCCTGACCCAAGAATTGTCACTGTCTGCTTGGAAGGGCTTGAGAATATTCTGAAGATTGGGGAAGCTGATAAGGATCTAGGAAACACAGAAGGCGTGAATGTTTATGCCCAGTTAATCGACGAGGCTGAAGGTCTAGAAAAGATTGAAAACCTCCAAAGCCATGACAACACTGAAATCTATGAGAAAGCAGTGAAGATCCTCGAAACTTATTGGTTGGAGGAGGAAGATGTGCCGGTTTCATTAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0098A22-k2LuV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E695080" ref_strand="+" ref_description="SGN-E695080 [LH_Ea05J14](-)">
      <seq>atgattgaccatcatgctcttcccctgccttgttaacctgttgacgcaaaattacaaaaaaagcattaaaaaagaagcttgttggacaatctcgaacattacagctggaaatagaaatcaaattcagattgtgattgaggctggcattattgcccctcttgtatatctgcttcaaaatgctgaatttgagataaagaaagaggctgcttgggcaatttcaaatgctacgtccggtggaaatcatgatcaaatcaagttcttggtgagccaaggttgtataaaaccattgtgtgatcttctggtatgtcctgacccaagaattgtcactgtctgtttggaagggcttgagaatattctgaagattggggaagctgataaggatctaggtaacacagaaggcgtgaatgtttatgcccagttaatcgacgaggctgaaggtctagaaaagattgaaaacctccaaagccatgacaacactgaaatctatgagaaagcagtgaagatcctcgaaacttattggttggaggaggaagatgtgccggtttcattaattgaagatcaattcgaatttggaggggccgatatatctcttccatcgggaggatttaacttcagttgatgggggttttcaggagataagtacaaaaacgatggctttagagtttcttggtcttcttaccacttagcttgatttatacactgagtgcccaagtggtcctcaagccaacccaactccacattgtaaaaaaagaactaacaatatgcttaacaaagtgtaaatgaatattaatgaaaattgagtttgagtttaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0098A22-k2LuV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0098A22.1" temp_strand="+" temp_description="C06SLm0098A22.1  AC219226.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0098A22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="17324" stop="21288"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17624" g_stop="17749" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="127" r_length="127" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17750" i_stop="17884" i_length="135">
            <donor d_prob="0.969" d_score="0.98"/>
            <acceptor a_prob="0.976" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17885" g_stop="18012" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="255" r_length="128" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18013" i_stop="18092" i_length="80">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.763" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18093" g_stop="18460" g_length="368"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="623" r_length="368" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="18461" i_stop="19149" i_length="689">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19150" g_stop="19354" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="624" r_stop="828" r_length="205" r_score="0.883"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0098A22.1" gen_strand="+" ref_id="SGN-E695080" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>827</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0098A22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E695080" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17624" e_stop="17749"/>
          <exon e_start="17885" e_stop="18012"/>
          <exon e_start="18093" e_stop="18460"/>
          <exon e_start="19150" e_stop="19354"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGATTGACCATCATGCTCTT-CCCTGCCTTGTTAACCTGTTGACGCAAAATTACAAAAAAAGCATTAAAAAGGAAGCTTGTTGGACAATCTCGAACATTACAGCTGGTAATAGAAATCAAATTCAGGTATGTTGTATGGTAATTGACAATTTGTGCTTCTTTATCAATTGACAGAGAACTGAAAATAAGTGAAGAAAGAGAACCTTTGCAAGATGATTCAGTTTTGTATAATGATACTGAAAGGGGTTTTAATTGAAATAGATTGTGATCGAGGCTGGCATTATTGCCCCTCTTGTATATCTGCTACAAAATGCTGAATTTGAGATAAAGAAAGAGGCTGCTTGGGCAATTTCAAATGCTACGTCCGGTGGAAATCATGATCAAATCAAGTATGGTTCCTTTAGCATATTCAGTTTCATCTGCTTAACCTTACATCTAGTTTGAAGCTCACATGTAAATTGATTTCTAGGTTCTTGGTGAGCCAAGGTTGTATAAAACCATTGTGTGATCTTCTGGTATGTCCTGACCCAAGAATTGTCACTGTCTGCTTGGAAGGGCTTGAGAATATTCTGAAGATTGGGGAAGCTGATAAGGATCTAGGAAACACAGAAGGCGTGAATGTTTATGCCCAGTTAATCGACGAGGCTGAAGGTCTAGAAAAGATTGAAAACCTCCAAAGCCATGACAACACTGAAATCTATGAGAAAGCAGTGAAGATCCTCGAAACTTATTGGTTGGAGGAGGAAGATGTGCCGGTTTCATTAAATGAAGATCAATTCGAATTTGGAGGGGCCGATATATCTCTTCCATCGGGAGGATTTAACTTCAGTTGATGGGGTATGTTATTCTTCCCTTCTTTTTTATGATTATTTCCCCTCTGTTAACGACGGTTTCCTTTGAAAACTTTTGTTCTTTTGAGCACCTGTTTTATGGTGTAAATTATTTAGCATTAGGATGTGTTAAAATGGTGTTTGAGCGATGATGTAAAGCTAGTCAACCTTACCTTTGATTTAGCAAAAATGGTTTGTTGCAGTTAAAACTTGTGGTAGTTTCTTAATGTTTAATTCTTTCCAGGTTTGGCTAGCAGGTCAGTGAGTGGTTTTAAATTGGAGAAACATCCTCTTTAAACTATGTGTAGAGAGAGTTGTCATCTACTTGGGGGAGGTTTGGATTTTACATATATTTTCTTCTATTTATTGATGGAGTTGGTGTTGTATAAGTTACTTTTTCCCCTAGACTAGACATATTGGTGGTGGTGGATATATATATGTATACATGTTAATGTACAAGTCATACGTGGGCTCTCCATGACATTATTTGGTGTAAACATATACTTGTTTCCATCTTTTTGTACCCTTATATGGCTTGTTTCCATCTCTGTACCCTCATTTGGCATTATCATAGTAGTTGCTTTCTGACTTAAGAAGAGATACTTCATTTACAAGAATGAGGTGCTGAAATTACTATCAATATGGAATGTGTTTGCTCCTTTTTGATCATTTGCTATATTTATATGTTCATTTTAGGGTTTTGAGGAGATAAGTACAAAAACGACGGCTTTAGAGTTTCTTGGTCTTCTTACCACTTAGCTTGATTGATACAATGAGTGCCCAAGTGGTCCTCAAGCCAACCCAACTCCACATTATAAAAA-AGAACAAACAATATGCTTAACAAAGTGTACATTAATATTAATGAAAAATGAGTTTTGAGTTTTACGTTCTAATATGGCAA</genome_strand>
        <mrna_strand>ATGATTGACCATCATGCTCTTCCCCTGCCTTGTTAACCTGTTGACGCAAAATTACAAAAAAAGCATTAAAAAAGAAGCTTGTTGGACAATCTCGAACATTACAGCTGGAAATAGAAATCAAATTCAG.......................................................................................................................................ATTGTGATTGAGGCTGGCATTATTGCCCCTCTTGTATATCTGCTTCAAAATGCTGAATTTGAGATAAAGAAAGAGGCTGCTTGGGCAATTTCAAATGCTACGTCCGGTGGAAATCATGATCAAATCAA................................................................................GTTCTTGGTGAGCCAAGGTTGTATAAAACCATTGTGTGATCTTCTGGTATGTCCTGACCCAAGAATTGTCACTGTCTGTTTGGAAGGGCTTGAGAATATTCTGAAGATTGGGGAAGCTGATAAGGATCTAGGTAACACAGAAGGCGTGAATGTTTATGCCCAGTTAATCGACGAGGCTGAAGGTCTAGAAAAGATTGAAAACCTCCAAAGCCATGACAACACTGAAATCTATGAGAAAGCAGTGAAGATCCTCGAAACTTATTGGTTGGAGGAGGAAGATGTGCCGGTTTCATTAATTGAAGATCAATTCGAATTTGGAGGGGCCGATATATCTCTTCCATCGGGAGGATTTAACTTCAGTTGATGGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTTTCAGGAGATAAGTACAAAAACGATGGCTTTAGAGTTTCTTGGTCTTCTTACCACTTAGCTTGATTTATACACTGAGTGCCCAAGTGGTCCTCAAGCCAACCCAACTCCACATTGTAAAAAAAGAACTAACAATATGCTTAACAAAGTGTAAATGAATATTAATGAAAATTGAG-TTTGAGTTTAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0098A22-k2LuV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E695753" ref_strand="+" ref_description="SGN-E695753 [LH_Ea07F15](-)">
      <seq>atagaaatcaaattcagattgtgattgaggctggcattattgcccctcttgtatatctgcttcaaaatgctgaatttgagataaagaaagaggctgcttgggcaatttcaaatgctacgtccggtggaaatcatgatcaaatcaagttcttggtgagccaaggttgtataaaaccattgtgtgatcttctggtatgtcctgacccaagaattgtcactgtctgtttggaagggcttgagaatattctgaagattggggaagctgataaggatctaggtaacacagaaggcgtgaatgtttatgcccagttaatcgacgaggctgaaggtctagaaaagattgaaaacctccaaagccatgacaacactgaaatctatgagaaagcagtgaagatcctcgaaacttattggttggaggaggaagatgtgccggtttcattaattgaagatcaattcgaatttggaggggccgatatatctcttccatcgggaggatttaacttcagttgatggggtttggctagcaggttagtgagtggttttaaattggagaaacatcctgctcattaaacatgtgtagagagagttgtcatctacttgggggacgatcggatttttacatatattttcttctatttattgatggagttggtgttctataagttaccttttcccctagactagactattggtggtggtggatattatatatatatatgtgtgtgtgtatacatgttaatgtacaagtcatacctgggctctccatggccttatttggtgtaaacatatacttgtttcaatgtttttgtacccttatatggcttgtttccaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0098A22-k2LuV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0098A22.1" temp_strand="+" temp_description="C06SLm0098A22.1  AC219226.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0098A22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="17574" stop="19297"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17733" g_stop="17749" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="17" r_length="17" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17750" i_stop="17884" i_length="135">
            <donor d_prob="0.969" d_score="0.00"/>
            <acceptor a_prob="0.976" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17885" g_stop="18012" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="145" r_length="128" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18013" i_stop="18092" i_length="80">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.763" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18093" g_stop="18460" g_length="368"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="513" r_length="368" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="18461" i_stop="18697" i_length="237">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="18698" g_stop="18996" g_length="299"/>
          <reference_exon_boundary r_type="cDNA" r_start="514" r_stop="829" r_length="316" r_score="0.829"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="830" polyA_stop="848"/>
      <MATCH_line gen_id="C06SLm0098A22.1" gen_strand="+" ref_id="SGN-E695753" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>812</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0098A22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E695753" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17733" e_stop="17749"/>
          <exon e_start="17885" e_stop="18012"/>
          <exon e_start="18093" e_stop="18460"/>
          <exon e_start="18698" e_stop="18996"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAGAAATCAAATTCAGGTATGTTGTATGGTAATTGACAATTTGTGCTTCTTTATCAATTGACAGAGAACTGAAAATAAGTGAAGAAAGAGAACCTTTGCAAGATGATTCAGTTTTGTATAATGATACTGAAAGGGGTTTTAATTGAAATAGATTGTGATCGAGGCTGGCATTATTGCCCCTCTTGTATATCTGCTACAAAATGCTGAATTTGAGATAAAGAAAGAGGCTGCTTGGGCAATTTCAAATGCTACGTCCGGTGGAAATCATGATCAAATCAAGTATGGTTCCTTTAGCATATTCAGTTTCATCTGCTTAACCTTACATCTAGTTTGAAGCTCACATGTAAATTGATTTCTAGGTTCTTGGTGAGCCAAGGTTGTATAAAACCATTGTGTGATCTTCTGGTATGTCCTGACCCAAGAATTGTCACTGTCTGCTTGGAAGGGCTTGAGAATATTCTGAAGATTGGGGAAGCTGATAAGGATCTAGGAAACACAGAAGGCGTGAATGTTTATGCCCAGTTAATCGACGAGGCTGAAGGTCTAGAAAAGATTGAAAACCTCCAAAGCCATGACAACACTGAAATCTATGAGAAAGCAGTGAAGATCCTCGAAACTTATTGGTTGGAGGAGGAAGATGTGCCGGTTTCATTAAATGAAGATCAATTCGAATTTGGAGGGGCCGATATATCTCTTCCATCGGGAGGATTTAACTTCAGTTGATGGGGTATGTTATTCTTCCCTTCTTTTTTATGATTATTTCCCCTCTGTTAACGACGGTTTCCTTTGAAAACTTTTGTTCTTTTGAGCACCTGTTTTATGGTGTAAATTATTTAGCATTAGGATGTGTTAAAATGGTGTTTGAGCGATGATGTAAAGCTAGTCAACCTTACCTTTGATTTAGCAAAAATGGTTTGTTGCAGTTAAAACTTGTGGTAGTTTCTTAATGTTTAATTCTTTCCAGGTTTGGCTAGCAGGTCAGTGAGTGGTTTTAAATTGGAGAAACATCCT-CT--TTAAACTATGTGTAGAGAGAGTTGTCATCTACTTGGGGGAGGTTTGGA-TTTTACATATATTTTCTTCTATTTATTGATGGAGTTGGTGTTGTATAAGTTACTTTTTCCCCTAGACTAGACATATTGGTGGTGGTGG-------ATATATATA--------TGTATACATGTTAATGTACAAGTCATACGTGGGCTCTCCATGACATTATTTGGTGTAAACATATACTTGTTTCCATCTTTTTGTACCCTTATATGGCTTGTTTCC</genome_strand>
        <mrna_strand>ATAGAAATCAAATTCAG.......................................................................................................................................ATTGTGATTGAGGCTGGCATTATTGCCCCTCTTGTATATCTGCTTCAAAATGCTGAATTTGAGATAAAGAAAGAGGCTGCTTGGGCAATTTCAAATGCTACGTCCGGTGGAAATCATGATCAAATCAA................................................................................GTTCTTGGTGAGCCAAGGTTGTATAAAACCATTGTGTGATCTTCTGGTATGTCCTGACCCAAGAATTGTCACTGTCTGTTTGGAAGGGCTTGAGAATATTCTGAAGATTGGGGAAGCTGATAAGGATCTAGGTAACACAGAAGGCGTGAATGTTTATGCCCAGTTAATCGACGAGGCTGAAGGTCTAGAAAAGATTGAAAACCTCCAAAGCCATGACAACACTGAAATCTATGAGAAAGCAGTGAAGATCCTCGAAACTTATTGGTTGGAGGAGGAAGATGTGCCGGTTTCATTAATTGAAGATCAATTCGAATTTGGAGGGGCCGATATATCTCTTCCATCGGGAGGATTTAACTTCAGTTGATGGG.............................................................................................................................................................................................................................................GTTTGGCTAGCAGGTTAGTGAGTGGTTTTAAATTGGAGAAACATCCTGCTCATTAAAC-ATGTGTAGAGAGAGTTGTCATCTACTTGGGGGACGATCGGATTTTTACATATATTTTCTTCTATTTATTGATGGAGTTGGTGTTCTATAAGTTACCTTTTCCCCTAGACTAGAC-TATTGGTGGTGGTGGATATTATATATATATATGTGTGTGTGTATACATGTTAATGTACAAGTCATACCTGGGCTCTCCATGGCCTTATTTGGTGTAAACATATACTTGTTTCAATGTTTTTGTACCCTTATATGGCTTGTTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0098A22-k2LuV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E209406" ref_strand="+" ref_description="SGN-E209406 [cLEC-53-F7]">
      <seq>gaggatttaacttcagttgatggtttttggctagcaggtcagtgagtggttttaaattggagaaacatcctctttaaactatgtgtagagagagttgtcatctacttgggggaggtttggattttacatatattttcttctatttattgatggagctggtgttgtataaagttacttttttccctaaactagacatattggtggtggtggatatatatatgtatacatgttaatgtacaagtcatacgtgggctctccatgacattatttggtgtaaacata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0098A22-k2LuV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0098A22.1" temp_strand="+" temp_description="C06SLm0098A22.1  AC219226.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0098A22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="18137" stop="19254"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18437" g_stop="18460" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="24" r_length="24" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18461" i_stop="18697" i_length="237">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18698" g_stop="18954" g_length="257"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="282" r_length="258" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0098A22.1" gen_strand="+" ref_id="SGN-E209406" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>281</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0098A22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E209406" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18437" e_stop="18460"/>
          <exon e_start="18698" e_stop="18954"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGATTTAACTTCAGTTGATGGGGTATGTTATTCTTCCCTTCTTTTTTATGATTATTTCCCCTCTGTTAACGACGGTTTCCTTTGAAAACTTTTGTTCTTTTGAGCACCTGTTTTATGGTGTAAATTATTTAGCATTAGGATGTGTTAAAATGGTGTTTGAGCGATGATGTAAAGCTAGTCAACCTTACCTTTGATTTAGCAAAAATGGTTTGTTGCAGTTAAAACTTGTGGTAGTTTCTTAATGTTTAATTCTTTCCAGGTTTGGCTAGCAGGTCAGTGAGTGGTTTTAAATTGGAGAAACATCCTCTTTAAACTATGTGTAGAGAGAGTTGTCATCTACTTGGGGGAGGTTTGGATTTTACATATATTTTCTTCTATTTATTGATGGAGTTGGTGTTGTAT-AAGTTACTTTTTCCCCTAGACTAGACATATTGGTGGTGGTGGATATATATATGTATACATGTTAATGTACAAGTCATACGTGGGCTCTCCATGACATTATTTGGTGTAAACATA</genome_strand>
        <mrna_strand>GAGGATTTAACTTCAGTTGATGGT.............................................................................................................................................................................................................................................TTTTGGCTAGCAGGTCAGTGAGTGGTTTTAAATTGGAGAAACATCCTCTTTAAACTATGTGTAGAGAGAGTTGTCATCTACTTGGGGGAGGTTTGGATTTTACATATATTTTCTTCTATTTATTGATGGAGCTGGTGTTGTATAAAGTTACTTTTTTCCCTAAACTAGACATATTGGTGGTGGTGGATATATATATGTATACATGTTAATGTACAAGTCATACGTGGGCTCTCCATGACATTATTTGGTGTAAACATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0098A22-k2LuV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E223449" ref_strand="+" ref_description="SGN-E223449 [cLEL-14-I9](-)">
      <seq>tcaagggaagataggtgcaagcacaggtggacgctaaagctacaggttcgttgttgcagctatccggacatcagtattcatccggagtttggtaggtcctcatgctttcgaggatgctaccgttttacattctagcgtagttttagagttgagctagcggagcatgttccactagcgtttctttcctgttttggttcaaactttgtattggcgctattttggccgatatacaagtaatacttaatgaattatttctttcagttgcttaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0098A22-k2LuV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0098A22.1" temp_strand="-" temp_description="C06SLm0098A22.1  AC219226.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0098A22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="52868" stop="20255"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52565" g_stop="52291" g_length="275"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="289" r_length="275" r_score="0.916"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0098A22.1" gen_strand="-" ref_id="SGN-E223449" ref_strand="+">
        <total_alignment_score>0.916</total_alignment_score>
        <cumulative_length_of_scored_exons>275</cumulative_length_of_scored_exons>
        <coverage percentage="0.952" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0098A22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E223449" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52565" e_stop="52291"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGCAGGCACAGGTGGACGCTAGAACTACAGGTTCGTTGTTGCAGCTATCCGGACATCAGTATTCATCCGGAGTTTGGTAGGTCCTCATGCTTTCGAGGATGCTACTGTTTTACATTCTAGCGTAGTTTTAGAGTTGAGCTAGCGGAGCATGTTCCACTAGCGTTTCTTTCCTGTTTTGGTTCAAACTTTGTATTGGTGCTATTTTGGCCGATATACAATTAATACTTAATGAATTATTCCTTTCAGTTGCTTATCTCTTAAATGTTAGATGGTT</genome_strand>
        <mrna_strand>GTGCAAGCACAGGTGGACGCTAAAGCTACAGGTTCGTTGTTGCAGCTATCCGGACATCAGTATTCATCCGGAGTTTGGTAGGTCCTCATGCTTTCGAGGATGCTACCGTTTTACATTCTAGCGTAGTTTTAGAGTTGAGCTAGCGGAGCATGTTCCACTAGCGTTTCTTTCCTGTTTTGGTTCAAACTTTGTATTGGCGCTATTTTGGCCGATATACAAGTAATACTTAATGAATTATTTCTTTCAGTTGCTTAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0098A22-k2LuV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E543103" ref_strand="+" ref_description="SGN-E543103 [TUS-64-L24](-)">
      <seq>ggcagccatggaaatggagaaaatcaaccatgcaactcttgaccagcagctgcaaagaatttggtttgattaatagcttgagcagtaaatattggacgtgcggctcgactatacggtgtagacgctcagttcggtgatcctcccgcctaggatatctactttgctgagtgggagagctccactgtttcgtagcccagtcattttggtacataactttttgtgtagtcttttgcttgtctatgggtatggtggggccctgtcccgtcgagtttcactactatactcttagaggtccatagacatcgcgtgggttgtatatatatgttttggataatggtctggacatggtttgtttgggatgtccacttgtacaagggcagccttgtcagctgcgtacatctttgtgtattgtgtagtggcagccttgtcggctgcgtatgctattatgctttggatagtggcggccttgtcggctcgcgtatgttgttacggttgaatggttatgactccttatgagacagatccactttatatatatatatatggcgttggggttggcgtgattgataaaaaaaaggggggcccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0098A22-k2LuV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0098A22.1" temp_strand="-" temp_description="C06SLm0098A22.1  AC219226.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0098A22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="59199" stop="56797"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58899" g_stop="58837" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58836" i_stop="58418" i_length="419">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.980" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58417" g_stop="58413" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="68" r_length="5" r_score="0.600"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58412" i_stop="58279" i_length="134">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.751" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58278" g_stop="58232" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="115" r_length="47" r_score="0.957"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58231" i_stop="58181" i_length="51">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58180" g_stop="58166" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="129" r_length="14" r_score="0.600"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58165" i_stop="57879" i_length="287">
            <donor d_prob="0.816" d_score="0.00"/>
            <acceptor a_prob="0.945" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="57878" g_stop="57858" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="149" r_length="20" r_score="0.524"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="57857" i_stop="57524" i_length="334">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.572" a_score="0.62"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="57523" g_stop="57114" g_length="410"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="556" r_length="407" r_score="0.898"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0098A22.1" gen_strand="-" ref_id="SGN-E543103" ref_strand="+">
        <total_alignment_score>0.907</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0098A22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E543103" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58899" e_stop="58837"/>
          <exon e_start="58417" e_stop="58413"/>
          <exon e_start="58278" e_stop="58232"/>
          <exon e_start="58180" e_stop="58166"/>
          <exon e_start="57878" e_stop="57858"/>
          <exon e_start="57523" e_stop="57114"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCAGCCATGGAAATGGAGAAAACCAACCATGCAACTCTTGGCCAGCAGCTGCAAAGAATTTGGTTAGTAATCTCTTTGCTTGGTGTGTTAATTCCTTAGAATACCTTTGTTAATTAGCCATTAATGTTAAGAAGGGGGTGTGACCAGTAGCTTAGGAAATTTGTTTTAGTTATTGAATGTGCTATGTTTGAATGGAAACCATGGTCGGATTACTAGTGGTGTCGTGTTAGTGTTTGGGCTGTTTTGATTAAAGCAAACTGCAGGAAATTCTTTTTTGGTGTTATGTATATGTTAATGTGATTATGGGTATATACTCCAAAGTATGAATACGATAAGGTAGATGTGTTGCGAATTATAAAATGAGTTATCGCTCGGTGTGTCATTGTTTCGTTACTATGGTTGCCGAGACGGAACTATTTTAGGGGAGGCTGTTTAATATGATTCGTTGGGTTATATGTGTTATTGGTATTGCTGTGGATAGTTTGGGTTGTTGTCGGATTGGGACGAAGTAAGGAATATAGGGGAAGTGCTGCCAGATTTTCGTTAGATTATTAGCTATCATACAATAGTAGTAAAGCGCGACGTTTATTTAATTGCGGCACGATTGTTGCTTGTTATAGATTTATAGCTTGAGCAGTAAATATTGGACGTGCGACTCGACTATACGGTATGTAACGCTATCATTTCTTTCTTTGTTTGGCATGACTTTTAAAAATGAGCGAATAACGGACAGGTTTGATACTTACTTCTAAAGCGTCTAGGTGATGTATATTCTTGCTTCCACAACTATTCCTCTATATATTGGCTATGTGTAAGGCTATGATTATTTCTCATATCTATGATAGTTCTTCTTAGAGTCATTGAGATTTTACGTTTCCATATCGTATTAAAGGTTCATAATCTTGATAAAATGTTGATCTTTGGTAATACTCCTTGCTGGTTCATGTTGATTGTTCTATTGAGTTATAAGGAATGGTTTTAATTGCATATGGTTGCTCATAATATTCTGCTCGTGCATAGAGTCATTTATCATTTCACCGAGTCCCGGGCCGGGTAATGTTCGTGCGGAGTTTCTTGCATATGTCACTGAGTCCCTCACTAGAGGGCCGGGTATGTATATTATATATATGATTGGTGATGAGGATGGTTATGATGATGATGATGACGGAGATGATGTGATGACTATTTCACCGAGTCCCTCACTAGAGGGTCGGGTATGTATGATGTATATATAATGATGATTATTTTGCCGAGTCCCTCACTAGAGGGCCGGGTACGTATGCTGTATATATAATGATGATTATTTTGCCGATTCCCTTACTAGGAAAGCTGGACACCTTATATGTTAAAGATATGCATGATTTTCACTTAAAAGGTACATGTGTAGCGATATCTTGTTTCGAGCTCCACTGTTCCGGAGCCCAGTCGTTTTGGTACATAAC-TTTTGTGTAGTCTTTTGCTTGTCTATGGGTATGGCGGGGCCCTGTCTCGTCGAGTTTCACTACTGTACTCTTAGAGGTATGTAGACATTGTGTGGGTTGTATATATATGTTTTGGATAATGGTCTGGACATGGTTTGTTTGGGATGTACGCTTGTACAAGGGCAGCCTTGTCGGCTGCATACATCATTGTGTATGGTGTAGTGGCAGCCTTGTCGGCTGCGTATGCTATTATGCTTTGGATAGTGGCGGCCTTGTCGGCTCGCGTATGATGTTACGGTTGAATGGTTATGACTCCTTATGAGACAGGTTCACTTTATATATATATATATATGTCGTTGGGGTT</genome_strand>
        <mrna_strand>GGCAGCCATGGAAATGGAGAAAATCAACCATGCAACTCTTGACCAGCAGCTGCAAAGAATTTG...................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTG......................................................................................................................................ATTAATAGCTTGAGCAGTAAATATTGGACGTGCGGCTCGACTATACG...................................................GTGTA-GACGCTCAG...............................................................................................................................................................................................................................................................................................-TTCGGTGATCCTCCCGCCTA..............................................................................................................................................................................................................................................................................................................................................GGATATCTACTTTGCT-GAGTG-GGAGAGCTCCACTGTTTCGTAGCCCAGTCATTTTGGTACATAACTTTTTGTGTAGTCTTTTGCTTGTCTATGGGTATGGTGGGGCCCTGTCCCGTCGAGTTTCACTACTATACTCTTAGAGGTCCATAGACATCGCGTGGGTTGTATATATATGTTTTGGATAATGGTCTGGACATGGTTTGTTTGGGATGTCCACTTGTACAAGGGCAGCCTTGTCAGCTGCGTACATCTTTGTGTATTGTGTAGTGGCAGCCTTGTCGGCTGCGTATGCTATTATGCTTTGGATAGTGGCGGCCTTGTCGGCTCGCGTATGTTGTTACGGTTGAATGGTTATGACTCCTTATGAGACAGATCCAC-TT-TATATATATATATATGGCGTTGGGGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0098A22-k2LuV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E538156" ref_strand="+" ref_description="SGN-E538156 [TUS-57-C10]">
      <seq>gagaaaaccagccattaaactcttggacagcagctgcaaagaaattgagtcatttatcatttcaccgagtcccgggccgggtaatgttcgtgcggagtttcttgcatatgtcaccgagtccctcactagagggccgggaatgtatattatatatatgattggtgatgaggatggttatgatgatgatgatgacggagatgatgtgatgactatttcactgagtccctcactagagggccgggtgtagacgctcagtttggtgatcctcccgcctaggatatctactctgctgtttgggagagctccactgttccggagcccagtcgttgtggtacataacttcttatgtagtcttttgcttgtctatgggtatgcggggccctgtcccgtcaagtttcactactatactcttagaggtctgtagacatcgtgtgggttgtataattatgtttttgataatggtctggacatggtttgtttgggatgtccacttgtacaagtgcaaccttgtcggttgtgtacatctttgtgtattgtgtagtggcagccttgacggctgcgtatgctattatgctttgaatagtggcagccttgtcggctcgcgtatgttgttacggttgaatgggtatgactctttatgagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0098A22-k2LuV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0098A22.1" temp_strand="-" temp_description="C06SLm0098A22.1  AC219226.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0098A22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="59183" stop="56854"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58883" g_stop="58837" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="0.894"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58836" i_stop="57879" i_length="958">
            <donor d_prob="0.995" d_score="0.89"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57878" g_stop="57685" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="241" r_length="194" r_score="0.979"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57684" i_stop="57609" i_length="76">
            <donor d_prob="0.979" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.53"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57608" g_stop="57564" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="287" r_length="46" r_score="0.533"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57563" i_stop="57512" i_length="52">
            <donor d_prob="0.000" d_score="0.53"/>
            <acceptor a_prob="0.950" a_score="0.82"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="57511" g_stop="57153" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="644" r_length="357" r_score="0.897"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0098A22.1" gen_strand="-" ref_id="SGN-E538156" ref_strand="+">
        <total_alignment_score>0.926</total_alignment_score>
        <cumulative_length_of_scored_exons>645</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0098A22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E538156" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58883" e_stop="58837"/>
          <exon e_start="57878" e_stop="57685"/>
          <exon e_start="57608" e_stop="57564"/>
          <exon e_start="57511" e_stop="57153"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAAAACCAACCATGCAACTCTTGGCCAGCAGCTGCAAAGAATTTGGTTAGTAATCTCTTTGCTTGGTGTGTTAATTCCTTAGAATACCTTTGTTAATTAGCCATTAATGTTAAGAAGGGGGTGTGACCAGTAGCTTAGGAAATTTGTTTTAGTTATTGAATGTGCTATGTTTGAATGGAAACCATGGTCGGATTACTAGTGGTGTCGTGTTAGTGTTTGGGCTGTTTTGATTAAAGCAAACTGCAGGAAATTCTTTTTTGGTGTTATGTATATGTTAATGTGATTATGGGTATATACTCCAAAGTATGAATACGATAAGGTAGATGTGTTGCGAATTATAAAATGAGTTATCGCTCGGTGTGTCATTGTTTCGTTACTATGGTTGCCGAGACGGAACTATTTTAGGGGAGGCTGTTTAATATGATTCGTTGGGTTATATGTGTTATTGGTATTGCTGTGGATAGTTTGGGTTGTTGTCGGATTGGGACGAAGTAAGGAATATAGGGGAAGTGCTGCCAGATTTTCGTTAGATTATTAGCTATCATACAATAGTAGTAAAGCGCGACGTTTATTTAATTGCGGCACGATTGTTGCTTGTTATAGATTTATAGCTTGAGCAGTAAATATTGGACGTGCGACTCGACTATACGGTATGTAACGCTATCATTTCTTTCTTTGTTTGGCATGACTTTTAAAAATGAGCGAATAACGGACAGGTTTGATACTTACTTCTAAAGCGTCTAGGTGATGTATATTCTTGCTTCCACAACTATTCCTCTATATATTGGCTATGTGTAAGGCTATGATTATTTCTCATATCTATGATAGTTCTTCTTAGAGTCATTGAGATTTTACGTTTCCATATCGTATTAAAGGTTCATAATCTTGATAAAATGTTGATCTTTGGTAATACTCCTTGCTGGTTCATGTTGATTGTTCTATTGAGTTATAAGGAATGGTTTTAATTGCATATGGTTGCTCATAATATTCTGCTCGTGCATAGAGTCATTTATCATTTCACCGAGTCCCGGGCCGGGTAATGTTCGTGCGGAGTTTCTTGCATATGTCACTGAGTCCCTCACTAGAGGGCCGGGTATGTATATTATATATATGATTGGTGATGAGGATGGTTATGATGATGATGATGACGGAGATGATGTGATGACTATTTCACCGAGTCCCTCACTAGAGGGTCGGGTATGTATGATGTATATATAATGATGATTATTTTGCCGAGTCCCTCACTAGAGGGCCGGGTACGTATGCTGTATATATAATGATGATTATTTTGCCGATTC-CCTTACTAGGAAAGCTGGACACCTTATATGTTAAAGATATGCATGATTTTCACTTAAAAGGTACATGTGTAGCGATATCTTGTTTCGAGCTCCACTGTTCCGGAGCCCAGTCGTTTTGGTACATAACTT-TTGTGTAGTCTTTTGCTTGTCTATGGGTATGGCGGGGCCCTGTCTCGTCGAGTTTCACTACTGTACTCTTAGAGGTATGTAGACATTGTGTGGGTTGTATATATATGTTTTGGATAATGGTCTGGACATGGTTTGTTTGGGATGTACGCTTGTACAAGGGCAGCCTTGTCGGCTGCATACATCATTGTGTATGGTGTAGTGGCAGCCTTGTCGGCTGCGTATGCTATTATGCTTTGGATAGTGGCGGCCTTGTCGGCTCGCGTATGATGTTACGGTTGAATGGTTATGACTCCTTATGAGAC</genome_strand>
        <mrna_strand>GAGAAAACCAGCCATTAAACTCTTGGACAGCAGCTGCAAAGAAATTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTCATTTATCATTTCACCGAGTCCCGGGCCGGGTAATGTTCGTGCGGAGTTTCTTGCATATGTCACCGAGTCCCTCACTAGAGGGCCGGGAATGTATATTATATATATGATTGGTGATGAGGATGGTTATGATGATGATGATGACGGAGATGATGTGATGACTATTTCACTGAGTCCCTCACTAGAGGGCCGG............................................................................GTGTAGACGCTCAGTTTGGTGATCCTCCCGCCTAGGATATCTACTC....................................................TGCTGT-TTG-GGAGAGCTCCACTGTTCCGGAGCCCAGTCGTTGTGGTACATAACTTCTTATGTAGTCTTTTGCTTGTCTATGGGTAT-GCGGGGCCCTGTCCCGTCAAGTTTCACTACTATACTCTTAGAGGTCTGTAGACATCGTGTGGGTTGTATAATTATGTTTTTGATAATGGTCTGGACATGGTTTGTTTGGGATGTCCACTTGTACAAGTGCAACCTTGTCGGTTGTGTACATCTTTGTGTATTGTGTAGTGGCAGCCTTGACGGCTGCGTATGCTATTATGCTTTGAATAGTGGCAGCCTTGTCGGCTCGCGTATGTTGTTACGGTTGAATGGGTATGACTCTTTATGAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0098A22-k2LuV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E538151" ref_strand="+" ref_description="SGN-E538151 [TUS-57-C6]">
      <seq>gagaaaaccagccattaaactcttggacagcagctgcaaagaaattgagtcatttatcatttcaccgagtcccgggccgggtaatgttcgtgcggagtttcttgcatatgtcaccgagtccctcactagagggccgggaatgtatattatatatatgattggtgatgaggatggttatgatgatgatgatgacggagatgatgtgatgactatttcactgagtccctcactagagggccgggtgtagacgctcagtttggtgatcctcccgcctaggatatctactctgctgtttgggagagctccactgttccggagcccagtcgttttggtacataacttcttatgtagtcttttgcttgtctatgggtatgcggggccctgtcccgtcaagtttcactactatactcttagaggtctgtagacatcgtgtgggttgtataattatgtttttgataatggtctggacatggtttgtttgggatgtccacttgtacaagtgcaaccttgtcggttgtgtacatctttgtgtattgtgtagtggcagccttgtcggctgcgtatgctattatgctttgaatagtggcagccttgtcggctcgcgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0098A22-k2LuV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0098A22.1" temp_strand="-" temp_description="C06SLm0098A22.1  AC219226.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0098A22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="59183" stop="56891"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58883" g_stop="58837" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="0.894"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58836" i_stop="57879" i_length="958">
            <donor d_prob="0.995" d_score="0.89"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57878" g_stop="57685" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="241" r_length="194" r_score="0.979"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57684" i_stop="57609" i_length="76">
            <donor d_prob="0.979" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.53"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57608" g_stop="57564" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="287" r_length="46" r_score="0.533"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57563" i_stop="57512" i_length="52">
            <donor d_prob="0.000" d_score="0.53"/>
            <acceptor a_prob="0.950" a_score="0.84"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="57511" g_stop="57191" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="606" r_length="319" r_score="0.903"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0098A22.1" gen_strand="-" ref_id="SGN-E538151" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>607</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0098A22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E538151" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58883" e_stop="58837"/>
          <exon e_start="57878" e_stop="57685"/>
          <exon e_start="57608" e_stop="57564"/>
          <exon e_start="57511" e_stop="57191"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAAAACCAACCATGCAACTCTTGGCCAGCAGCTGCAAAGAATTTGGTTAGTAATCTCTTTGCTTGGTGTGTTAATTCCTTAGAATACCTTTGTTAATTAGCCATTAATGTTAAGAAGGGGGTGTGACCAGTAGCTTAGGAAATTTGTTTTAGTTATTGAATGTGCTATGTTTGAATGGAAACCATGGTCGGATTACTAGTGGTGTCGTGTTAGTGTTTGGGCTGTTTTGATTAAAGCAAACTGCAGGAAATTCTTTTTTGGTGTTATGTATATGTTAATGTGATTATGGGTATATACTCCAAAGTATGAATACGATAAGGTAGATGTGTTGCGAATTATAAAATGAGTTATCGCTCGGTGTGTCATTGTTTCGTTACTATGGTTGCCGAGACGGAACTATTTTAGGGGAGGCTGTTTAATATGATTCGTTGGGTTATATGTGTTATTGGTATTGCTGTGGATAGTTTGGGTTGTTGTCGGATTGGGACGAAGTAAGGAATATAGGGGAAGTGCTGCCAGATTTTCGTTAGATTATTAGCTATCATACAATAGTAGTAAAGCGCGACGTTTATTTAATTGCGGCACGATTGTTGCTTGTTATAGATTTATAGCTTGAGCAGTAAATATTGGACGTGCGACTCGACTATACGGTATGTAACGCTATCATTTCTTTCTTTGTTTGGCATGACTTTTAAAAATGAGCGAATAACGGACAGGTTTGATACTTACTTCTAAAGCGTCTAGGTGATGTATATTCTTGCTTCCACAACTATTCCTCTATATATTGGCTATGTGTAAGGCTATGATTATTTCTCATATCTATGATAGTTCTTCTTAGAGTCATTGAGATTTTACGTTTCCATATCGTATTAAAGGTTCATAATCTTGATAAAATGTTGATCTTTGGTAATACTCCTTGCTGGTTCATGTTGATTGTTCTATTGAGTTATAAGGAATGGTTTTAATTGCATATGGTTGCTCATAATATTCTGCTCGTGCATAGAGTCATTTATCATTTCACCGAGTCCCGGGCCGGGTAATGTTCGTGCGGAGTTTCTTGCATATGTCACTGAGTCCCTCACTAGAGGGCCGGGTATGTATATTATATATATGATTGGTGATGAGGATGGTTATGATGATGATGATGACGGAGATGATGTGATGACTATTTCACCGAGTCCCTCACTAGAGGGTCGGGTATGTATGATGTATATATAATGATGATTATTTTGCCGAGTCCCTCACTAGAGGGCCGGGTACGTATGCTGTATATATAATGATGATTATTTTGCCGATTC-CCTTACTAGGAAAGCTGGACACCTTATATGTTAAAGATATGCATGATTTTCACTTAAAAGGTACATGTGTAGCGATATCTTGTTTCGAGCTCCACTGTTCCGGAGCCCAGTCGTTTTGGTACATAACTT-TTGTGTAGTCTTTTGCTTGTCTATGGGTATGGCGGGGCCCTGTCTCGTCGAGTTTCACTACTGTACTCTTAGAGGTATGTAGACATTGTGTGGGTTGTATATATATGTTTTGGATAATGGTCTGGACATGGTTTGTTTGGGATGTACGCTTGTACAAGGGCAGCCTTGTCGGCTGCATACATCATTGTGTATGGTGTAGTGGCAGCCTTGTCGGCTGCGTATGCTATTATGCTTTGGATAGTGGCGGCCTTGTCGGCTCGCGTA</genome_strand>
        <mrna_strand>GAGAAAACCAGCCATTAAACTCTTGGACAGCAGCTGCAAAGAAATTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTCATTTATCATTTCACCGAGTCCCGGGCCGGGTAATGTTCGTGCGGAGTTTCTTGCATATGTCACCGAGTCCCTCACTAGAGGGCCGGGAATGTATATTATATATATGATTGGTGATGAGGATGGTTATGATGATGATGATGACGGAGATGATGTGATGACTATTTCACTGAGTCCCTCACTAGAGGGCCGG............................................................................GTGTAGACGCTCAGTTTGGTGATCCTCCCGCCTAGGATATCTACTC....................................................TGCTGT-TTG-GGAGAGCTCCACTGTTCCGGAGCCCAGTCGTTTTGGTACATAACTTCTTATGTAGTCTTTTGCTTGTCTATGGGTAT-GCGGGGCCCTGTCCCGTCAAGTTTCACTACTATACTCTTAGAGGTCTGTAGACATCGTGTGGGTTGTATAATTATGTTTTTGATAATGGTCTGGACATGGTTTGTTTGGGATGTCCACTTGTACAAGTGCAACCTTGTCGGTTGTGTACATCTTTGTGTATTGTGTAGTGGCAGCCTTGTCGGCTGCGTATGCTATTATGCTTTGAATAGTGGCAGCCTTGTCGGCTCGCGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0098A22-k2LuV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E268096" ref_strand="+" ref_description="SGN-E268096 [cLEI-15-C13]">
      <seq>gaaaaccagccattaaactcttggacagcagctgcaaagaaattgagtcatttatcattgcaccgagtcccgggccgggtaatgttcgtgcggagtttcttgcatatgtcaccgagtccctcactagagggccgggaatgtatattatatatatgattggtgatgaggatggttatgatgatgatgatgacggagatgatgtgatgactatttcactgagtccctcactagagggccgggtgtagacgctcagtttggtgatcctcccgcctaggatatctactctgctgtttgggagagctccactgttccggagcccagtcgttttggtacataacttcttatgtagtcttttgcttgtctatgggtatgcggggccctgtcccgtcaagtttcactactatactcttagaggtctgtagacatcgtgtgggtagtataattatgtttttgataatgggctggacatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0098A22-k2LuV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0098A22.1" temp_strand="-" temp_description="C06SLm0098A22.1  AC219226.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0098A22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="59181" stop="57025"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58881" g_stop="58837" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="0.889"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58836" i_stop="57879" i_length="958">
            <donor d_prob="0.995" d_score="0.89"/>
            <acceptor a_prob="0.945" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57878" g_stop="57685" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="239" r_length="194" r_score="0.974"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57684" i_stop="57609" i_length="76">
            <donor d_prob="0.979" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.53"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57608" g_stop="57564" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="285" r_length="46" r_score="0.533"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57563" i_stop="57512" i_length="52">
            <donor d_prob="0.000" d_score="0.53"/>
            <acceptor a_prob="0.950" a_score="0.84"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="57511" g_stop="57325" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="470" r_length="185" r_score="0.882"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0098A22.1" gen_strand="-" ref_id="SGN-E268096" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>471</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0098A22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E268096" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58881" e_stop="58837"/>
          <exon e_start="57878" e_stop="57685"/>
          <exon e_start="57608" e_stop="57564"/>
          <exon e_start="57511" e_stop="57325"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAACCAACCATGCAACTCTTGGCCAGCAGCTGCAAAGAATTTGGTTAGTAATCTCTTTGCTTGGTGTGTTAATTCCTTAGAATACCTTTGTTAATTAGCCATTAATGTTAAGAAGGGGGTGTGACCAGTAGCTTAGGAAATTTGTTTTAGTTATTGAATGTGCTATGTTTGAATGGAAACCATGGTCGGATTACTAGTGGTGTCGTGTTAGTGTTTGGGCTGTTTTGATTAAAGCAAACTGCAGGAAATTCTTTTTTGGTGTTATGTATATGTTAATGTGATTATGGGTATATACTCCAAAGTATGAATACGATAAGGTAGATGTGTTGCGAATTATAAAATGAGTTATCGCTCGGTGTGTCATTGTTTCGTTACTATGGTTGCCGAGACGGAACTATTTTAGGGGAGGCTGTTTAATATGATTCGTTGGGTTATATGTGTTATTGGTATTGCTGTGGATAGTTTGGGTTGTTGTCGGATTGGGACGAAGTAAGGAATATAGGGGAAGTGCTGCCAGATTTTCGTTAGATTATTAGCTATCATACAATAGTAGTAAAGCGCGACGTTTATTTAATTGCGGCACGATTGTTGCTTGTTATAGATTTATAGCTTGAGCAGTAAATATTGGACGTGCGACTCGACTATACGGTATGTAACGCTATCATTTCTTTCTTTGTTTGGCATGACTTTTAAAAATGAGCGAATAACGGACAGGTTTGATACTTACTTCTAAAGCGTCTAGGTGATGTATATTCTTGCTTCCACAACTATTCCTCTATATATTGGCTATGTGTAAGGCTATGATTATTTCTCATATCTATGATAGTTCTTCTTAGAGTCATTGAGATTTTACGTTTCCATATCGTATTAAAGGTTCATAATCTTGATAAAATGTTGATCTTTGGTAATACTCCTTGCTGGTTCATGTTGATTGTTCTATTGAGTTATAAGGAATGGTTTTAATTGCATATGGTTGCTCATAATATTCTGCTCGTGCATAGAGTCATTTATCATTTCACCGAGTCCCGGGCCGGGTAATGTTCGTGCGGAGTTTCTTGCATATGTCACTGAGTCCCTCACTAGAGGGCCGGGTATGTATATTATATATATGATTGGTGATGAGGATGGTTATGATGATGATGATGACGGAGATGATGTGATGACTATTTCACCGAGTCCCTCACTAGAGGGTCGGGTATGTATGATGTATATATAATGATGATTATTTTGCCGAGTCCCTCACTAGAGGGCCGGGTACGTATGCTGTATATATAATGATGATTATTTTGCCGATTC-CCTTACTAGGAAAGCTGGACACCTTATATGTTAAAGATATGCATGATTTTCACTTAAAAGGTACATGTGTAGCGATATCTTGTTTCGAGCTCCACTGTTCCGGAGCCCAGTCGTTTTGGTACATAACTT-TTGTGTAGTCTTTTGCTTGTCTATGGGTATGGCGGGGCCCTGTCTCGTCGAGTTTCACTACTGTACTCTTAGAGGTATGTAGACATTGTGTGGGTTGTATATATATGTTTTGGATAATGGTCTGGACATG</genome_strand>
        <mrna_strand>GAAAACCAGCCATTAAACTCTTGGACAGCAGCTGCAAAGAAATTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTCATTTATCATTGCACCGAGTCCCGGGCCGGGTAATGTTCGTGCGGAGTTTCTTGCATATGTCACCGAGTCCCTCACTAGAGGGCCGGGAATGTATATTATATATATGATTGGTGATGAGGATGGTTATGATGATGATGATGACGGAGATGATGTGATGACTATTTCACTGAGTCCCTCACTAGAGGGCCGG............................................................................GTGTAGACGCTCAGTTTGGTGATCCTCCCGCCTAGGATATCTACTC....................................................TGCTGT-TTG-GGAGAGCTCCACTGTTCCGGAGCCCAGTCGTTTTGGTACATAACTTCTTATGTAGTCTTTTGCTTGTCTATGGGTAT-GCGGGGCCCTGTCCCGTCAAGTTTCACTACTATACTCTTAGAGGTCTGTAGACATCGTGTGGGTAGTATAATTATGTTTTTGATAATGGGCTGGACATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0098A22-k2LuV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E329330" ref_strand="+" ref_description="SGN-E329330 [cTOD-2-L7]">
      <seq>tcaacacgaagcttgtgcagtggattaaaatgttactggaagaggaggaggagaagaggagggtatgagaggctaaatgggtcgggttgtatgaggatgaatcgggtcggtttggggaaacgaaggttctggaagataaatctaaagcggagagtgaagttgagtcggaattatttgaaattttggccgaagaaattcgtaatgaatgtgcgggatgcgtatgtgaatatgatgatgaagattgctaattccaagtgtatgagtagtggggttggtggtggattcggtacgaggcagttgaaagagtatgatgagaaggtgctcgtacagatttacaagtccatgattattgcgcagggacagttaattggtgatggtgatgtaaaatttggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0098A22-k2LuV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0098A22.1" temp_strand="+" temp_description="C06SLm0098A22.1  AC219226.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0098A22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="80977" stop="81969"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81277" g_stop="81669" g_length="393"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="393" r_length="393" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0098A22.1" gen_strand="+" ref_id="SGN-E329330" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>393</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0098A22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E329330" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81277" e_stop="81669"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAACACGAAGCTTGTGCAGTGGATTAAAATGTTACTGGAAGAGGAGGAGGAGAAGAGGAGGGTATGAGAGGCTAAATGGGTCGGGTTGTATGAGGATGAATCGGGTCGGTTTGGGGAAACGAAGGTTCTGGAAGATAAATCTAAAGCGGAGAGTGAAGTTGAGTCGGAATTATTTGAAATTTTGGCCGAAGAAATTCGTAATGAATGTGCGGGATGCGTATGTGAATATGATGATGAAGATTGCTAATTCCAAGTGTATGAGTAGTGGGGTTGGTGGTGGATTCGGTACGAGGCAGTTGAAAGAGTATGATGAGAAGGTGCTCGTACAGATTTACAAGTCCATGATTATTGCGCAGGGACAGTTAATTGGTGATGGTGATGTAAAATTTGGC</genome_strand>
        <mrna_strand>TCAACACGAAGCTTGTGCAGTGGATTAAAATGTTACTGGAAGAGGAGGAGGAGAAGAGGAGGGTATGAGAGGCTAAATGGGTCGGGTTGTATGAGGATGAATCGGGTCGGTTTGGGGAAACGAAGGTTCTGGAAGATAAATCTAAAGCGGAGAGTGAAGTTGAGTCGGAATTATTTGAAATTTTGGCCGAAGAAATTCGTAATGAATGTGCGGGATGCGTATGTGAATATGATGATGAAGATTGCTAATTCCAAGTGTATGAGTAGTGGGGTTGGTGGTGGATTCGGTACGAGGCAGTTGAAAGAGTATGATGAGAAGGTGCTCGTACAGATTTACAAGTCCATGATTATTGCGCAGGGACAGTTAATTGGTGATGGTGATGTAAAATTTGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0098A22-k2LuV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E302961" ref_strand="+" ref_description="SGN-E302961 [cLEW-26-P15]">
      <seq>aggactcagcagtttcctgtgggaacaagttcgttcagaaacattcttcagccagcacaaaggctgaccaaagaactgtaacactgatgaaagaagagaatcgcatcgtcagtgaggaacttcaaagaaggtacatgatgcagaacacatttgttgaccaacagcaacaagacatcaaggacctgaagcaaactcttttgactacaaaagcgggtatgcagttcatgcaaatgaagtttcatgaggaaatgcaaaatattggcatccacatacatggcctagcacacgcagcttctggttatcatagagttcttgaagaaaatcgcaggctttacaatcaagtgcaagaccttaaaggaagcataagggtttattgtcgagtaagaccctttttgcctgggcaatcaagttatatcagtaatgtcgatcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0098A22-k2LuV/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0098A22.1" temp_strand="+" temp_description="C06SLm0098A22.1  AC219226.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0098A22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="93306" stop="94738"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93606" g_stop="93667" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93668" i_stop="93782" i_length="115">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93783" g_stop="93899" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="179" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="93900" i_stop="93990" i_length="91">
            <donor d_prob="0.810" d_score="1.00"/>
            <acceptor a_prob="0.643" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93991" g_stop="94072" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="261" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94073" i_stop="94178" i_length="106">
            <donor d_prob="0.287" d_score="1.00"/>
            <acceptor a_prob="0.919" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94179" g_stop="94274" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="357" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="94275" i_stop="94364" i_length="90">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="94365" g_stop="94438" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="431" r_length="74" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0098A22.1" gen_strand="+" ref_id="SGN-E302961" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>431</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0098A22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E302961" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93606" e_stop="93667"/>
          <exon e_start="93783" e_stop="93899"/>
          <exon e_start="93991" e_stop="94072"/>
          <exon e_start="94179" e_stop="94274"/>
          <exon e_start="94365" e_stop="94438"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGACTCAGCAGTTTCCTGTGGGAACAAGTTCGTTCAGAAACATTCTTCAGCCAGCACAAAGGTAATGCCTCTCAGTTTTGCAAATCACTAGGTAATCAATCATAAAGGTATTTTTTTAATATAGAATAGAGGATGACTCATACTTGCACATTACTTTTTTTCTCTTTCTCAATTAGGCTGACCAAAGAACTGTAACACTGATGAAAGAAGAGAATCGCATCGTCAGTGAGGAACTTCAAAGAAGGTACATGATGCAGAACACATTTGTTGACCAACAGCAACAAGACATCAAGGTAAGAATCGAAACCAGGCATGATCGGACTCCCAAACATGAAACTTGTGGATTTTCCACCTATATTTACGAACAATGATGCTCCACTGCAGGACCTGAAGCAAACTCTTTTGACTACAAAAGCGGGTATGCAGTTCATGCAAATGAAGTTTCATGAGGAAATGCAAAATATTGGTAGGGTCAATGCACTTGACAAATGTTCCCCTTTTTTCCCTTTCTTTTCTATGGTTGATTTCTTGAGCTGAGTTTGCTTCCATCTTGTAATATCCCTGCATTATAGGCATCCACATACATGGCCTAGCACACGCAGCTTCTGGTTATCATAGAGTTCTTGAAGAAAATCGCAGGCTTTACAATCAAGTGCAAGACCTTAAAGGTATCTTATTATAACATCCCACTTTGTCCATCTTCATTCTCTCATACATGTTTTGAAATGAAAAGGTTGTTTCTTTGTGCTCCAATTCAGGAAGCATAAGGGTTTATTGTCGAGTAAGACCCTTTTTGCCTGGGCAATCAAGTTATATCAGTAATGTCGATCAT</genome_strand>
        <mrna_strand>AGGACTCAGCAGTTTCCTGTGGGAACAAGTTCGTTCAGAAACATTCTTCAGCCAGCACAAAG...................................................................................................................GCTGACCAAAGAACTGTAACACTGATGAAAGAAGAGAATCGCATCGTCAGTGAGGAACTTCAAAGAAGGTACATGATGCAGAACACATTTGTTGACCAACAGCAACAAGACATCAAG...........................................................................................GACCTGAAGCAAACTCTTTTGACTACAAAAGCGGGTATGCAGTTCATGCAAATGAAGTTTCATGAGGAAATGCAAAATATTG..........................................................................................................GCATCCACATACATGGCCTAGCACACGCAGCTTCTGGTTATCATAGAGTTCTTGAAGAAAATCGCAGGCTTTACAATCAAGTGCAAGACCTTAAAG..........................................................................................GAAGCATAAGGGTTTATTGTCGAGTAAGACCCTTTTTGCCTGGGCAATCAAGTTATATCAGTAATGTCGATCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>23</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="12871" PGL_stop="19354"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="12871" e_stop="13267"/>
            <exon e_start="15343" e_stop="15439"/>
            <exon e_start="15565" e_stop="15656"/>
            <exon e_start="15747" e_stop="15878"/>
            <exon e_start="16157" e_stop="16342"/>
            <exon e_start="16430" e_stop="16593"/>
            <exon e_start="16690" e_stop="16768"/>
            <exon e_start="17621" e_stop="17749"/>
            <exon e_start="17885" e_stop="18012"/>
            <exon e_start="18093" e_stop="18460"/>
            <exon e_start="18698" e_stop="19002"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.971" e_score="0.940"/>
          <exon-intron don_prob="0.880" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.967" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.958" e_score="1.000"/>
          <exon-intron don_prob="0.914" acc_prob="0.500" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.941" e_score="1.000"/>
          <exon-intron don_prob="0.969" acc_prob="0.976" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.763" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.940">
            <gDNA_exon_boundary e_start="12871" e_stop="13267" e_length="397"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.971">
            <gDNA_intron_boundary i_start="13268" i_stop="15342" i_length="2075"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="15343" e_stop="15439" e_length="97"/>
          </exon>
          <intron i_serial="2" don_prob="0.880" acc_prob="0.998">
            <gDNA_intron_boundary i_start="15440" i_stop="15564" i_length="125"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="15565" e_stop="15656" e_length="92"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.967">
            <gDNA_intron_boundary i_start="15657" i_stop="15746" i_length="90"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="15747" e_stop="15878" e_length="132"/>
          </exon>
          <intron i_serial="4" don_prob="0.995" acc_prob="0.999">
            <gDNA_intron_boundary i_start="15879" i_stop="16156" i_length="278"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="16157" e_stop="16342" e_length="186"/>
          </exon>
          <intron i_serial="5" don_prob="0.996" acc_prob="0.958">
            <gDNA_intron_boundary i_start="16343" i_stop="16429" i_length="87"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="16430" e_stop="16593" e_length="164"/>
          </exon>
          <intron i_serial="6" don_prob="0.914" acc_prob="0.500">
            <gDNA_intron_boundary i_start="16594" i_stop="16689" i_length="96"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="16690" e_stop="16768" e_length="79"/>
          </exon>
          <intron i_serial="7" don_prob="1.000" acc_prob="0.941">
            <gDNA_intron_boundary i_start="16769" i_stop="17620" i_length="852"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="17621" e_stop="17749" e_length="129"/>
          </exon>
          <intron i_serial="8" don_prob="0.969" acc_prob="0.976">
            <gDNA_intron_boundary i_start="17750" i_stop="17884" i_length="135"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="17885" e_stop="18012" e_length="128"/>
          </exon>
          <intron i_serial="9" don_prob="0.994" acc_prob="0.763">
            <gDNA_intron_boundary i_start="18013" i_stop="18092" i_length="80"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="18093" e_stop="18460" e_length="368"/>
          </exon>
          <intron i_serial="10" don_prob="0.998" acc_prob="0.998">
            <gDNA_intron_boundary i_start="18461" i_stop="18697" i_length="237"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="18698" e_stop="19002" e_length="305"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12871" stop="13267"/>
              <exon start="15343" stop="15439"/>
              <exon start="15565" stop="15656"/>
              <exon start="15747" stop="15878"/>
              <exon start="16157" stop="16221"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E691913" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12927" stop="13267"/>
              <exon start="15343" stop="15439"/>
              <exon start="15565" stop="15656"/>
              <exon start="15747" stop="15878"/>
              <exon start="16157" stop="16320"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739017" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12932" stop="13267"/>
              <exon start="15343" stop="15439"/>
              <exon start="15565" stop="15615"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301119" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12983" stop="13267"/>
              <exon start="15343" stop="15439"/>
              <exon start="15565" stop="15656"/>
              <exon start="15747" stop="15878"/>
              <exon start="16157" stop="16342"/>
              <exon start="16430" stop="16593"/>
              <exon start="16690" stop="16768"/>
              <exon start="17621" stop="17749"/>
              <exon start="17885" stop="18012"/>
              <exon start="18093" stop="18460"/>
              <exon start="18698" stop="18965"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745184" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13005" stop="13267"/>
              <exon start="15343" stop="15439"/>
              <exon start="15565" stop="15656"/>
              <exon start="15747" stop="15826"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331824" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13055" stop="13267"/>
              <exon start="15343" stop="15439"/>
              <exon start="15565" stop="15656"/>
              <exon start="15747" stop="15878"/>
              <exon start="16157" stop="16342"/>
              <exon start="16430" stop="16593"/>
              <exon start="16690" stop="16768"/>
              <exon start="17621" stop="17749"/>
              <exon start="17885" stop="18012"/>
              <exon start="18093" stop="18460"/>
              <exon start="18698" stop="19002"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E747650" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15359" stop="15439"/>
              <exon start="15565" stop="15656"/>
              <exon start="15747" stop="15878"/>
              <exon start="16157" stop="16342"/>
              <exon start="16430" stop="16511"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345253" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15391" stop="15439"/>
              <exon start="15565" stop="15656"/>
              <exon start="15747" stop="15878"/>
              <exon start="16157" stop="16323"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245891" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15638" stop="15656"/>
              <exon start="15747" stop="15878"/>
              <exon start="16157" stop="16342"/>
              <exon start="16430" stop="16593"/>
              <exon start="16690" stop="16705"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271316" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15763" stop="15878"/>
              <exon start="16157" stop="16342"/>
              <exon start="16430" stop="16564"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207706" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16752" stop="16768"/>
              <exon start="17621" stop="17749"/>
              <exon start="17885" stop="18012"/>
              <exon start="18093" stop="18460"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544736" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16753" stop="16768"/>
              <exon start="17621" stop="17749"/>
              <exon start="17885" stop="18012"/>
              <exon start="18093" stop="18391"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306640" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17733" stop="17749"/>
              <exon start="17885" stop="18012"/>
              <exon start="18093" stop="18460"/>
              <exon start="18698" stop="18996"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E695753" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18437" stop="18460"/>
              <exon start="18698" stop="18954"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209406" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTTTTTTCTTTTTAGAAACAATCCAAATTTTCCCCAAACCCTGATTCCACTCTCAATTGTCTTCTTCCTCATTTTCCTATTTAACAAAACTCAATTTCGCATTTCGAATTCCTCAAACTGAATTTTGTTCATAGAGATTATCGATTATCGAGTTGAGTTCAGAATTTCGATTCACCGGAGCTATGTCACTGAGGCCGAACTCGAGAACGGAGGCTCGCCGGAGCAGGTACAAAGTTGCCGTCGATGCGGAGGAAGGACGGAGAAGAAGGGAAGATAACATGGTTGAGATCCGGAAGAATAAAAGAGAAGAGAATTTGCTTAAGAAGCGTCGTGAAGGTTTACTACAAGCTCAGCAGTTTCCTAGCACTGCTGCTGTTTCTCACCTTGATAAGAAG : CTGGAGACTCTTCCTGAATTGATTGCTGGGGTTTGGTCTGATGACAGCAGTTTGCAACTTGAATGTACAACACAATTCCGGAAACTGCTTTCAATTG : AACGCAATCCTCCTATAGAGGAAGTGATACAGTCTGGGGTAGTTCCTCGCTTTGTTGAATTTCTTGCTCGAGATGACTATCCTCAACTGCAG : TTTGAGGCAGCGTGGGCTCTTACAAATATTGCATCTGGTACATCAGAAAACACTAAAGTTGTGATTGATTATGGTTCTGTCCCAATTTTCATCAGACTTCTAAGTTCACCAAGTGATGATGTCCGTGAACAG : GCCGTTTGGGCTTTGGGAAATATTGCTGGTGACTCGCCCAAGTATCGTGACCTTGTGCTTGGCCATGGAGCTTTAGTGGCATTGCTGGCACAATTTAATGAGCAGGCAAAGCTATCTATGTTGAGAAATGCTACCTGGACATTGTCAAACTTTTGTAGGGGAAAACCTCAGCCACTGTTCGAGCAG : ACAAAAGCGGCACTCCCCACTCTTGGTCGCCTTATCCACTCAAATGATGAAGAAGTCTTGACAGATGCATGCTGGGCTCTTTCATATCTTTCTGATGGAACTAATGACAAAATCCAGGCTGTTATTGAAGCTGGAGTGTGTTCCCGCCTTGTTGAGCTGCTACT : TCATTCTTCACCATCTGTTCTCATTCCTGCCTTGCGCACTGTTGGTAACATAGTCACAGGAGACGATATCCAAACTCAG : GTTATGATTGACCATCATGCTCTTCCCTGCCTTGTTAACCTGTTGACGCAAAATTACAAAAAAAGCATTAAAAAGGAAGCTTGTTGGACAATCTCGAACATTACAGCTGGTAATAGAAATCAAATTCAG : ATTGTGATCGAGGCTGGCATTATTGCCCCTCTTGTATATCTGCTACAAAATGCTGAATTTGAGATAAAGAAAGAGGCTGCTTGGGCAATTTCAAATGCTACGTCCGGTGGAAATCATGATCAAATCAA : GTTCTTGGTGAGCCAAGGTTGTATAAAACCATTGTGTGATCTTCTGGTATGTCCTGACCCAAGAATTGTCACTGTCTGCTTGGAAGGGCTTGAGAATATTCTGAAGATTGGGGAAGCTGATAAGGATCTAGGAAACACAGAAGGCGTGAATGTTTATGCCCAGTTAATCGACGAGGCTGAAGGTCTAGAAAAGATTGAAAACCTCCAAAGCCATGACAACACTGAAATCTATGAGAAAGCAGTGAAGATCCTCGAAACTTATTGGTTGGAGGAGGAAGATGTGCCGGTTTCATTAAATGAAGATCAATTCGAATTTGGAGGGGCCGATATATCTCTTCCATCGGGAGGATTTAACTTCAGTTGATGGG : GTTTGGCTAGCAGGTCAGTGAGTGGTTTTAAATTGGAGAAACATCCTCTTTAAACTATGTGTAGAGAGAGTTGTCATCTACTTGGGGGAGGTTTGGATTTTACATATATTTTCTTCTATTTATTGATGGAGTTGGTGTTGTATAAGTTACTTTTTCCCCTAGACTAGACATATTGGTGGTGGTGGATATATATATGTATACATGTTAATGTACAAGTCATACGTGGGCTCTCCATGACATTATTTGGTGTAAACATATACTTGTTTCCATCTTTTTGTACCCTTATATGGCTTGTTTCCATCTCT</gDNA_template>
            <first_frame> F  F  F  L  F  R  N  N  P  N  F  P  Q  T  L  I  P  L  S  I  V  F  F  L  I  F  L  F  N  K  T  Q  F  R  I  S  N  S  S  N  *  I  L  F  I  E  I  I  D  Y  R  V  E  F  R  I  S  I  H  R  S  Y  V  T  E  A  E  L  E  N  G  G  S  P  E  Q  V  Q  S  C  R  R  C  G  G  R  T  E  K  K  G  R  *  H  G  *  D  P  E  E  *  K  R  R  E  F  A  *  E  A  S  *  R  F  T  T  S  S  A  V  S  *  H  C  C  C  F  S  P  *  *  E   : A  G  D  S  S  *  I  D  C  W  G  L  V  *  *  Q  Q  F  A  T  *  M  Y  N  T  I  P  E  T  A  F  N  * :   T  Q  S  S  Y  R  G  S  D  T  V  W  G  S  S  S  L  C  *  I  S  C  S  R  *  L  S  S  T  A   : V  *  G  S  V  G  S  Y  K  Y  C  I  W  Y  I  R  K  H  *  S  C  D  *  L  W  F  C  P  N  F  H  Q  T  S  K  F  T  K  *  *  C  P  *  T   : G  R  L  G  F  G  K  Y  C  W  *  L  A  Q  V  S  *  P  C  A  W  P  W  S  F  S  G  I  A  G  T  I  *  *  A  G  K  A  I  Y  V  E  K  C  Y  L  D  I  V  K  L  L  *  G  K  T  S  A  T  V  R  A   : D  K  S  G  T  P  H  S  W  S  P  Y  P  L  K  *  *  R  S  L  D  R  C  M  L  G  S  F  I  S  F  *  W  N  *  *  Q  N  P  G  C  Y  *  S  W  S  V  F  P  P  C  *  A  A  T  :  S  F  F  T  I  C  S  H  S  C  L  A  H  C  W  *  H  S  H  R  R  R  Y  P  N  S   : G  Y  D  *  P  S  C  S  S  L  P  C  *  P  V  D  A  K  L  Q  K  K  H  *  K  G  S  L  L  D  N  L  E  H  Y  S  W  *  *  K  S  N  S   : D  C  D  R  G  W  H  Y  C  P  S  C  I  S  A  T  K  C  *  I  *  D  K  E  R  G  C  L  G  N  F  K  C  Y  V  R  W  K  S  *  S  N  Q  :  V  L  G  E  P  R  L  Y  K  T  I  V  *  S  S  G  M  S  *  P  K  N  C  H  C  L  L  G  R  A  *  E  Y  S  E  D  W  G  S  *  *  G  S  R  K  H  R  R  R  E  C  L  C  P  V  N  R  R  G  *  R  S  R  K  D  *  K  P  P  K  P  *  Q  H  *  N  L  *  E  S  S  E  D  P  R  N  L  L  V  G  G  G  R  C  A  G  F  I  K  *  R  S  I  R  I  W  R  G  R  Y  I  S  S  I  G  R  I  *  L  Q  L  M  G :   F  G  *  Q  V  S  E  W  F  *  I  G  E  T  S  S  L  N  Y  V  *  R  E  L  S  S  T  W  G  R  F  G  F  Y  I  Y  F  L  L  F  I  D  G  V  G  V  V  *  V  T  F  S  P  R  L  D  I  L  V  V  V  D  I  Y  M  Y  T  C  *  C  T  S  H  T  W  A  L  H  D  I  I  W  C  K  H  I  L  V  S  I  F  L  Y  P  Y  M  A  C  F  H  L  </first_frame>
            <second_frame>  F  F  F  F  L  E  T  I  Q  I  F  P  K  P  *  F  H  S  Q  L  S  S  S  S  F  S  Y  L  T  K  L  N  F  A  F  R  I  P  Q  T  E  F  C  S  *  R  L  S  I  I  E  L  S  S  E  F  R  F  T  G  A  M  S  L  R  P  N  S  R  T  E  A  R  R  S  R  Y  K  V  A  V  D  A  E  E  G  R  R  R  R  E  D  N  M  V  E  I  R  K  N  K  R  E  E  N  L  L  K  K  R  R  E  G  L  L  Q  A  Q  Q  F  P  S  T  A  A  V  S  H  L  D  K  K  :  L  E  T  L  P  E  L  I  A  G  V  W  S  D  D  S  S  L  Q  L  E  C  T  T  Q  F  R  K  L  L  S  I   : E  R  N  P  P  I  E  E  V  I  Q  S  G  V  V  P  R  F  V  E  F  L  A  R  D  D  Y  P  Q  L  Q  :  F  E  A  A  W  A  L  T  N  I  A  S  G  T  S  E  N  T  K  V  V  I  D  Y  G  S  V  P  I  F  I  R  L  L  S  S  P  S  D  D  V  R  E  Q  :  A  V  W  A  L  G  N  I  A  G  D  S  P  K  Y  R  D  L  V  L  G  H  G  A  L  V  A  L  L  A  Q  F  N  E  Q  A  K  L  S  M  L  R  N  A  T  W  T  L  S  N  F  C  R  G  K  P  Q  P  L  F  E  Q  :  T  K  A  A  L  P  T  L  G  R  L  I  H  S  N  D  E  E  V  L  T  D  A  C  W  A  L  S  Y  L  S  D  G  T  N  D  K  I  Q  A  V  I  E  A  G  V  C  S  R  L  V  E  L  L  L :   H  S  S  P  S  V  L  I  P  A  L  R  T  V  G  N  I  V  T  G  D  D  I  Q  T  Q  :  V  M  I  D  H  H  A  L  P  C  L  V  N  L  L  T  Q  N  Y  K  K  S  I  K  K  E  A  C  W  T  I  S  N  I  T  A  G  N  R  N  Q  I  Q  :  I  V  I  E  A  G  I  I  A  P  L  V  Y  L  L  Q  N  A  E  F  E  I  K  K  E  A  A  W  A  I  S  N  A  T  S  G  G  N  H  D  Q  I  K :   F  L  V  S  Q  G  C  I  K  P  L  C  D  L  L  V  C  P  D  P  R  I  V  T  V  C  L  E  G  L  E  N  I  L  K  I  G  E  A  D  K  D  L  G  N  T  E  G  V  N  V  Y  A  Q  L  I  D  E  A  E  G  L  E  K  I  E  N  L  Q  S  H  D  N  T  E  I  Y  E  K  A  V  K  I  L  E  T  Y  W  L  E  E  E  D  V  P  V  S  L  N  E  D  Q  F  E  F  G  G  A  D  I  S  L  P  S  G  G  F  N  F  S  *  W   : G  L  A  S  R  S  V  S  G  F  K  L  E  K  H  P  L  *  T  M  C  R  E  S  C  H  L  L  G  G  G  L  D  F  T  Y  I  F  F  Y  L  L  M  E  L  V  L  Y  K  L  L  F  P  L  D  *  T  Y  W  W  W  W  I  Y  I  C  I  H  V  N  V  Q  V  I  R  G  L  S  M  T  L  F  G  V  N  I  Y  L  F  P  S  F  C  T  L  I  W  L  V  S  I  S </second_frame>
            <third_frame>   F  F  S  F  *  K  Q  S  K  F  S  P  N  P  D  S  T  L  N  C  L  L  P  H  F  P  I  *  Q  N  S  I  S  H  F  E  F  L  K  L  N  F  V  H  R  D  Y  R  L  S  S  *  V  Q  N  F  D  S  P  E  L  C  H  *  G  R  T  R  E  R  R  L  A  G  A  G  T  K  L  P  S  M  R  R  K  D  G  E  E  G  K  I  T  W  L  R  S  G  R  I  K  E  K  R  I  C  L  R  S  V  V  K  V  Y  Y  K  L  S  S  F  L  A  L  L  L  F  L  T  L  I  R  S :   W  R  L  F  L  N  *  L  L  G  F  G  L  M  T  A  V  C  N  L  N  V  Q  H  N  S  G  N  C  F  Q  L  :  N  A  I  L  L  *  R  K  *  Y  S  L  G  *  F  L  A  L  L  N  F  L  L  E  M  T  I  L  N  C  S :   L  R  Q  R  G  L  L  Q  I  L  H  L  V  H  Q  K  T  L  K  L  *  L  I  M  V  L  S  Q  F  S  S  D  F  *  V  H  Q  V  M  M  S  V  N  R :   P  F  G  L  W  E  I  L  L  V  T  R  P  S  I  V  T  L  C  L  A  M  E  L  *  W  H  C  W  H  N  L  M  S  R  Q  S  Y  L  C  *  E  M  L  P  G  H  C  Q  T  F  V  G  E  N  L  S  H  C  S  S  R :   Q  K  R  H  S  P  L  L  V  A  L  S  T  Q  M  M  K  K  S  *  Q  M  H  A  G  L  F  H  I  F  L  M  E  L  M  T  K  S  R  L  L  L  K  L  E  C  V  P  A  L  L  S  C  Y   : F  I  L  H  H  L  F  S  F  L  P  C  A  L  L  V  T  *  S  Q  E  T  I  S  K  L  R :   L  *  L  T  I  M  L  F  P  A  L  L  T  C  *  R  K  I  T  K  K  A  L  K  R  K  L  V  G  Q  S  R  T  L  Q  L  V  I  E  I  K  F  R :   L  *  S  R  L  A  L  L  P  L  L  Y  I  C  Y  K  M  L  N  L  R  *  R  K  R  L  L  G  Q  F  Q  M  L  R  P  V  E  I  M  I  K  S   : S  S  W  *  A  K  V  V  *  N  H  C  V  I  F  W  Y  V  L  T  Q  E  L  S  L  S  A  W  K  G  L  R  I  F  *  R  L  G  K  L  I  R  I  *  E  T  Q  K  A  *  M  F  M  P  S  *  S  T  R  L  K  V  *  K  R  L  K  T  S  K  A  M  T  T  L  K  S  M  R  K  Q  *  R  S  S  K  L  I  G  W  R  R  K  M  C  R  F  H  *  M  K  I  N  S  N  L  E  G  P  I  Y  L  F  H  R  E  D  L  T  S  V  D  G  :  V  W  L  A  G  Q  *  V  V  L  N  W  R  N  I  L  F  K  L  C  V  E  R  V  V  I  Y  L  G  E  V  W  I  L  H  I  F  S  S  I  Y  *  W  S  W  C  C  I  S  Y  F  F  P  *  T  R  H  I  G  G  G  G  Y  I  Y  V  Y  M  L  M  Y  K  S  Y  V  G  S  P  *  H  Y  L  V  *  T  Y  T  C  F  H  L  F  V  P  L  Y  G  L  F  P  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0098A22.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13007" stop="13267"/>
                    <exon start="15343" stop="15439"/>
                    <exon start="15565" stop="15656"/>
                    <exon start="15747" stop="15878"/>
                    <exon start="16157" stop="16342"/>
                    <exon start="16430" stop="16593"/>
                    <exon start="16690" stop="16768"/>
                    <exon start="17621" stop="17749"/>
                    <exon start="17885" stop="18012"/>
                    <exon start="18093" stop="18456"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1629</number_coding_nucleotides>
                  <number_encoded_amino_acids>543</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RLSIIELSSEFRFTGAMSLRPNSRTEARRSRYKVAVDAEEGRRRREDNMVEIRKNKREENLLKKRREGLLQAQQFPSTAAVSHLDKKLETLPELIAGVWSDDSSLQLECTTQFRKLLSIERNPPIEEVIQSGVVPRFVEFLARDDYPQLQFEAAWALTNIASGTSENTKVVIDYGSVPIFIRLLSSPSDDVREQAVWALGNIAGDSPKYRDLVLGHGALVALLAQFNEQAKLSMLRNATWTLSNFCRGKPQPLFEQTKAALPTLGRLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCSRLVELLLHSSPSVLIPALRTVGNIVTGDDIQTQVMIDHHALPCLVNLLTQNYKKSIKKEACWTISNITAGNRNQIQIVIEAGIIAPLVYLLQNAEFEIKKEAAWAISNATSGGNHDQIKFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKIGEADKDLGNTEGVNVYAQLIDEAEGLEKIENLQSHDNTEIYEKAVKILETYWLEEEDVPVSLNEDQFEFGGADISLPSGGFNFS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="16752" e_stop="16768"/>
            <exon e_start="17621" e_stop="17749"/>
            <exon e_start="17885" e_stop="18012"/>
            <exon e_start="18093" e_stop="18460"/>
            <exon e_start="19150" e_stop="19354"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.941" e_score="1.000"/>
          <exon-intron don_prob="0.969" acc_prob="0.976" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.763" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.996" e_score="0.992"/>
          <exon-only e_score="0.883"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="16752" e_stop="16768" e_length="17"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.941">
            <gDNA_intron_boundary i_start="16769" i_stop="17620" i_length="852"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="17621" e_stop="17749" e_length="129"/>
          </exon>
          <intron i_serial="2" don_prob="0.969" acc_prob="0.976">
            <gDNA_intron_boundary i_start="17750" i_stop="17884" i_length="135"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="17885" e_stop="18012" e_length="128"/>
          </exon>
          <intron i_serial="3" don_prob="0.994" acc_prob="0.763">
            <gDNA_intron_boundary i_start="18013" i_stop="18092" i_length="80"/>
          </intron>
          <exon e_serial="4" e_score="0.992">
            <gDNA_exon_boundary e_start="18093" e_stop="18460" e_length="368"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.996">
            <gDNA_intron_boundary i_start="18461" i_stop="19149" i_length="689"/>
          </intron>
          <exon e_serial="5" e_score="0.883">
            <gDNA_exon_boundary e_start="19150" e_stop="19354" e_length="205"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16752" stop="16768"/>
              <exon start="17621" stop="17749"/>
              <exon start="17885" stop="18012"/>
              <exon start="18093" stop="18460"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544736" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16753" stop="16768"/>
              <exon start="17621" stop="17749"/>
              <exon start="17885" stop="18012"/>
              <exon start="18093" stop="18391"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306640" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17624" stop="17749"/>
              <exon start="17885" stop="18012"/>
              <exon start="18093" stop="18460"/>
              <exon start="19150" stop="19354"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E695080" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACGATATCCAAACTCAG : GTTATGATTGACCATCATGCTCTTCCCTGCCTTGTTAACCTGTTGACGCAAAATTACAAAAAAAGCATTAAAAAGGAAGCTTGTTGGACAATCTCGAACATTACAGCTGGTAATAGAAATCAAATTCAG : ATTGTGATCGAGGCTGGCATTATTGCCCCTCTTGTATATCTGCTACAAAATGCTGAATTTGAGATAAAGAAAGAGGCTGCTTGGGCAATTTCAAATGCTACGTCCGGTGGAAATCATGATCAAATCAA : GTTCTTGGTGAGCCAAGGTTGTATAAAACCATTGTGTGATCTTCTGGTATGTCCTGACCCAAGAATTGTCACTGTCTGCTTGGAAGGGCTTGAGAATATTCTGAAGATTGGGGAAGCTGATAAGGATCTAGGAAACACAGAAGGCGTGAATGTTTATGCCCAGTTAATCGACGAGGCTGAAGGTCTAGAAAAGATTGAAAACCTCCAAAGCCATGACAACACTGAAATCTATGAGAAAGCAGTGAAGATCCTCGAAACTTATTGGTTGGAGGAGGAAGATGTGCCGGTTTCATTAAATGAAGATCAATTCGAATTTGGAGGGGCCGATATATCTCTTCCATCGGGAGGATTTAACTTCAGTTGATGGG : GGTTTTGAGGAGATAAGTACAAAAACGACGGCTTTAGAGTTTCTTGGTCTTCTTACCACTTAGCTTGATTGATACAATGAGTGCCCAAGTGGTCCTCAAGCCAACCCAACTCCACATTATAAAAAAGAACAAACAATATGCTTAACAAAGTGTACATTAATATTAATGAAAAATGAGTTTTGAGTTTTACGTTCTAATATGGCAA</gDNA_template>
            <first_frame> T  I  S  K  L  R :   L  *  L  T  I  M  L  F  P  A  L  L  T  C  *  R  K  I  T  K  K  A  L  K  R  K  L  V  G  Q  S  R  T  L  Q  L  V  I  E  I  K  F  R :   L  *  S  R  L  A  L  L  P  L  L  Y  I  C  Y  K  M  L  N  L  R  *  R  K  R  L  L  G  Q  F  Q  M  L  R  P  V  E  I  M  I  K  S   : S  S  W  *  A  K  V  V  *  N  H  C  V  I  F  W  Y  V  L  T  Q  E  L  S  L  S  A  W  K  G  L  R  I  F  *  R  L  G  K  L  I  R  I  *  E  T  Q  K  A  *  M  F  M  P  S  *  S  T  R  L  K  V  *  K  R  L  K  T  S  K  A  M  T  T  L  K  S  M  R  K  Q  *  R  S  S  K  L  I  G  W  R  R  K  M  C  R  F  H  *  M  K  I  N  S  N  L  E  G  P  I  Y  L  F  H  R  E  D  L  T  S  V  D  G  :  G  F  E  E  I  S  T  K  T  T  A  L  E  F  L  G  L  L  T  T  *  L  D  *  Y  N  E  C  P  S  G  P  Q  A  N  P  T  P  H  Y  K  K  E  Q  T  I  C  L  T  K  C  T  L  I  L  M  K  N  E  F  *  V  L  R  S  N  M  A  </first_frame>
            <second_frame>  R  Y  P  N  S   : G  Y  D  *  P  S  C  S  S  L  P  C  *  P  V  D  A  K  L  Q  K  K  H  *  K  G  S  L  L  D  N  L  E  H  Y  S  W  *  *  K  S  N  S   : D  C  D  R  G  W  H  Y  C  P  S  C  I  S  A  T  K  C  *  I  *  D  K  E  R  G  C  L  G  N  F  K  C  Y  V  R  W  K  S  *  S  N  Q  :  V  L  G  E  P  R  L  Y  K  T  I  V  *  S  S  G  M  S  *  P  K  N  C  H  C  L  L  G  R  A  *  E  Y  S  E  D  W  G  S  *  *  G  S  R  K  H  R  R  R  E  C  L  C  P  V  N  R  R  G  *  R  S  R  K  D  *  K  P  P  K  P  *  Q  H  *  N  L  *  E  S  S  E  D  P  R  N  L  L  V  G  G  G  R  C  A  G  F  I  K  *  R  S  I  R  I  W  R  G  R  Y  I  S  S  I  G  R  I  *  L  Q  L  M  G :   V  L  R  R  *  V  Q  K  R  R  L  *  S  F  L  V  F  L  P  L  S  L  I  D  T  M  S  A  Q  V  V  L  K  P  T  Q  L  H  I  I  K  K  N  K  Q  Y  A  *  Q  S  V  H  *  Y  *  *  K  M  S  F  E  F  Y  V  L  I  W  Q </second_frame>
            <third_frame>   D  I  Q  T  Q  :  V  M  I  D  H  H  A  L  P  C  L  V  N  L  L  T  Q  N  Y  K  K  S  I  K  K  E  A  C  W  T  I  S  N  I  T  A  G  N  R  N  Q  I  Q  :  I  V  I  E  A  G  I  I  A  P  L  V  Y  L  L  Q  N  A  E  F  E  I  K  K  E  A  A  W  A  I  S  N  A  T  S  G  G  N  H  D  Q  I  K :   F  L  V  S  Q  G  C  I  K  P  L  C  D  L  L  V  C  P  D  P  R  I  V  T  V  C  L  E  G  L  E  N  I  L  K  I  G  E  A  D  K  D  L  G  N  T  E  G  V  N  V  Y  A  Q  L  I  D  E  A  E  G  L  E  K  I  E  N  L  Q  S  H  D  N  T  E  I  Y  E  K  A  V  K  I  L  E  T  Y  W  L  E  E  E  D  V  P  V  S  L  N  E  D  Q  F  E  F  G  G  A  D  I  S  L  P  S  G  G  F  N  F  S  *  W   : G  F  *  G  D  K  Y  K  N  D  G  F  R  V  S  W  S  S  Y  H  L  A  *  L  I  Q  *  V  P  K  W  S  S  S  Q  P  N  S  T  L  *  K  R  T  N  N  M  L  N  K  V  Y  I  N  I  N  E  K  *  V  L  S  F  T  F  *  Y  G   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0098A22.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="16754" stop="16768"/>
                    <exon start="17621" stop="17749"/>
                    <exon start="17885" stop="18012"/>
                    <exon start="18093" stop="18456"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>633</number_coding_nucleotides>
                  <number_encoded_amino_acids>211</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DIQTQVMIDHHALPCLVNLLTQNYKKSIKKEACWTISNITAGNRNQIQIVIEAGIIAPLVYLLQNAEFEIKKEAAWAISNATSGGNHDQIKFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKIGEADKDLGNTEGVNVYAQLIDEAEGLEKIENLQSHDNTEIYEKAVKILETYWLEEEDVPVSLNEDQFEFGGADISLPSGGFNFS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="12932" e_stop="13267"/>
            <exon e_start="15343" e_stop="15439"/>
            <exon e_start="15565" e_stop="15878"/>
            <exon e_start="16157" e_stop="16342"/>
            <exon e_start="16430" e_stop="16564"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.971" e_score="0.997"/>
          <exon-intron don_prob="0.880" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.999" e_score="0.984"/>
          <exon-intron don_prob="0.996" acc_prob="0.958" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="12932" e_stop="13267" e_length="336"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.971">
            <gDNA_intron_boundary i_start="13268" i_stop="15342" i_length="2075"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="15343" e_stop="15439" e_length="97"/>
          </exon>
          <intron i_serial="2" don_prob="0.880" acc_prob="0.998">
            <gDNA_intron_boundary i_start="15440" i_stop="15564" i_length="125"/>
          </intron>
          <exon e_serial="3" e_score="0.984">
            <gDNA_exon_boundary e_start="15565" e_stop="15878" e_length="314"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="0.999">
            <gDNA_intron_boundary i_start="15879" i_stop="16156" i_length="278"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="16157" e_stop="16342" e_length="186"/>
          </exon>
          <intron i_serial="4" don_prob="0.996" acc_prob="0.958">
            <gDNA_intron_boundary i_start="16343" i_stop="16429" i_length="87"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="16430" e_stop="16564" e_length="135"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12932" stop="13267"/>
              <exon start="15343" stop="15439"/>
              <exon start="15565" stop="15615"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301119" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13012" stop="13267"/>
              <exon start="15343" stop="15439"/>
              <exon start="15565" stop="15878"/>
              <exon start="16157" stop="16309"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E691240" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15763" stop="15878"/>
              <exon start="16157" stop="16342"/>
              <exon start="16430" stop="16564"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207706" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCTTCTTCCTCATTTTCCTATTTAACAAAACTCAATTTCGCATTTCGAATTCCTCAAACTGAATTTTGTTCATAGAGATTATCGATTATCGAGTTGAGTTCAGAATTTCGATTCACCGGAGCTATGTCACTGAGGCCGAACTCGAGAACGGAGGCTCGCCGGAGCAGGTACAAAGTTGCCGTCGATGCGGAGGAAGGACGGAGAAGAAGGGAAGATAACATGGTTGAGATCCGGAAGAATAAAAGAGAAGAGAATTTGCTTAAGAAGCGTCGTGAAGGTTTACTACAAGCTCAGCAGTTTCCTAGCACTGCTGCTGTTTCTCACCTTGATAAGAAG : CTGGAGACTCTTCCTGAATTGATTGCTGGGGTTTGGTCTGATGACAGCAGTTTGCAACTTGAATGTACAACACAATTCCGGAAACTGCTTTCAATTG : AACGCAATCCTCCTATAGAGGAAGTGATACAGTCTGGGGTAGTTCCTCGCTTTGTTGAATTTCTTGCTCGAGATGACTATCCTCAACTGCAGGTTTTTTTACAAAATCTATTATTTTTGTTTTTTGTTTTGCAGTTCCATCTTTATTTCTAATGTTTACATAATTGGCATTCTATAATCTAGTTTGAGGCAGCGTGGGCTCTTACAAATATTGCATCTGGTACATCAGAAAACACTAAAGTTGTGATTGATTATGGTTCTGTCCCAATTTTCATCAGACTTCTAAGTTCACCAAGTGATGATGTCCGTGAACAG : GCCGTTTGGGCTTTGGGAAATATTGCTGGTGACTCGCCCAAGTATCGTGACCTTGTGCTTGGCCATGGAGCTTTAGTGGCATTGCTGGCACAATTTAATGAGCAGGCAAAGCTATCTATGTTGAGAAATGCTACCTGGACATTGTCAAACTTTTGTAGGGGAAAACCTCAGCCACTGTTCGAGCAG : ACAAAAGCGGCACTCCCCACTCTTGGTCGCCTTATCCACTCAAATGATGAAGAAGTCTTGACAGATGCATGCTGGGCTCTTTCATATCTTTCTGATGGAACTAATGACAAAATCCAGGCTGTTATTGAAGCTGGA</gDNA_template>
            <first_frame> S  S  S  S  F  S  Y  L  T  K  L  N  F  A  F  R  I  P  Q  T  E  F  C  S  *  R  L  S  I  I  E  L  S  S  E  F  R  F  T  G  A  M  S  L  R  P  N  S  R  T  E  A  R  R  S  R  Y  K  V  A  V  D  A  E  E  G  R  R  R  R  E  D  N  M  V  E  I  R  K  N  K  R  E  E  N  L  L  K  K  R  R  E  G  L  L  Q  A  Q  Q  F  P  S  T  A  A  V  S  H  L  D  K  K  :  L  E  T  L  P  E  L  I  A  G  V  W  S  D  D  S  S  L  Q  L  E  C  T  T  Q  F  R  K  L  L  S  I   : E  R  N  P  P  I  E  E  V  I  Q  S  G  V  V  P  R  F  V  E  F  L  A  R  D  D  Y  P  Q  L  Q  V  F  L  Q  N  L  L  F  L  F  F  V  L  Q  F  H  L  Y  F  *  C  L  H  N  W  H  S  I  I  *  F  E  A  A  W  A  L  T  N  I  A  S  G  T  S  E  N  T  K  V  V  I  D  Y  G  S  V  P  I  F  I  R  L  L  S  S  P  S  D  D  V  R  E  Q  :  A  V  W  A  L  G  N  I  A  G  D  S  P  K  Y  R  D  L  V  L  G  H  G  A  L  V  A  L  L  A  Q  F  N  E  Q  A  K  L  S  M  L  R  N  A  T  W  T  L  S  N  F  C  R  G  K  P  Q  P  L  F  E  Q  :  T  K  A  A  L  P  T  L  G  R  L  I  H  S  N  D  E  E  V  L  T  D  A  C  W  A  L  S  Y  L  S  D  G  T  N  D  K  I  Q  A  V  I  E  A  G </first_frame>
            <second_frame>  L  L  P  H  F  P  I  *  Q  N  S  I  S  H  F  E  F  L  K  L  N  F  V  H  R  D  Y  R  L  S  S  *  V  Q  N  F  D  S  P  E  L  C  H  *  G  R  T  R  E  R  R  L  A  G  A  G  T  K  L  P  S  M  R  R  K  D  G  E  E  G  K  I  T  W  L  R  S  G  R  I  K  E  K  R  I  C  L  R  S  V  V  K  V  Y  Y  K  L  S  S  F  L  A  L  L  L  F  L  T  L  I  R  S :   W  R  L  F  L  N  *  L  L  G  F  G  L  M  T  A  V  C  N  L  N  V  Q  H  N  S  G  N  C  F  Q  L  :  N  A  I  L  L  *  R  K  *  Y  S  L  G  *  F  L  A  L  L  N  F  L  L  E  M  T  I  L  N  C  R  F  F  Y  K  I  Y  Y  F  C  F  L  F  C  S  S  I  F  I  S  N  V  Y  I  I  G  I  L  *  S  S  L  R  Q  R  G  L  L  Q  I  L  H  L  V  H  Q  K  T  L  K  L  *  L  I  M  V  L  S  Q  F  S  S  D  F  *  V  H  Q  V  M  M  S  V  N  R :   P  F  G  L  W  E  I  L  L  V  T  R  P  S  I  V  T  L  C  L  A  M  E  L  *  W  H  C  W  H  N  L  M  S  R  Q  S  Y  L  C  *  E  M  L  P  G  H  C  Q  T  F  V  G  E  N  L  S  H  C  S  S  R :   Q  K  R  H  S  P  L  L  V  A  L  S  T  Q  M  M  K  K  S  *  Q  M  H  A  G  L  F  H  I  F  L  M  E  L  M  T  K  S  R  L  L  L  K  L   </second_frame>
            <third_frame>   F  F  L  I  F  L  F  N  K  T  Q  F  R  I  S  N  S  S  N  *  I  L  F  I  E  I  I  D  Y  R  V  E  F  R  I  S  I  H  R  S  Y  V  T  E  A  E  L  E  N  G  G  S  P  E  Q  V  Q  S  C  R  R  C  G  G  R  T  E  K  K  G  R  *  H  G  *  D  P  E  E  *  K  R  R  E  F  A  *  E  A  S  *  R  F  T  T  S  S  A  V  S  *  H  C  C  C  F  S  P  *  *  E   : A  G  D  S  S  *  I  D  C  W  G  L  V  *  *  Q  Q  F  A  T  *  M  Y  N  T  I  P  E  T  A  F  N  * :   T  Q  S  S  Y  R  G  S  D  T  V  W  G  S  S  S  L  C  *  I  S  C  S  R  *  L  S  S  T  A  G  F  F  T  K  S  I  I  F  V  F  C  F  A  V  P  S  L  F  L  M  F  T  *  L  A  F  Y  N  L  V  *  G  S  V  G  S  Y  K  Y  C  I  W  Y  I  R  K  H  *  S  C  D  *  L  W  F  C  P  N  F  H  Q  T  S  K  F  T  K  *  *  C  P  *  T   : G  R  L  G  F  G  K  Y  C  W  *  L  A  Q  V  S  *  P  C  A  W  P  W  S  F  S  G  I  A  G  T  I  *  *  A  G  K  A  I  Y  V  E  K  C  Y  L  D  I  V  K  L  L  *  G  K  T  S  A  T  V  R  A   : D  K  S  G  T  P  H  S  W  S  P  Y  P  L  K  *  *  R  S  L  D  R  C  M  L  G  S  F  I  S  F  *  W  N  *  *  Q  N  P  G  C  Y  *  S  W  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0098A22.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13007" stop="13267"/>
                    <exon start="15343" stop="15439"/>
                    <exon start="15565" stop="15716"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>507</number_coding_nucleotides>
                  <number_encoded_amino_acids>169</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RLSIIELSSEFRFTGAMSLRPNSRTEARRSRYKVAVDAEEGRRRREDNMVEIRKNKREENLLKKRREGLLQAQQFPSTAAVSHLDKKLETLPELIAGVWSDDSSLQLECTTQFRKLLSIERNPPIEEVIQSGVVPRFVEFLARDDYPQLQVFLQNLLFLFFVLQFHLYF*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0098A22.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15747" stop="15878"/>
                    <exon start="16157" stop="16342"/>
                    <exon start="16430" stop="16564"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>453</number_coding_nucleotides>
                  <number_encoded_amino_acids>151</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FEAAWALTNIASGTSENTKVVIDYGSVPIFIRLLSSPSDDVREQAVWALGNIAGDSPKYRDLVLGHGALVALLAQFNEQAKLSMLRNATWTLSNFCRGKPQPLFEQTKAALPTLGRLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="52565" PGL_stop="52291"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="52565" e_stop="52291"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.916"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.916">
            <gDNA_exon_boundary e_start="52565" e_stop="52291" e_length="275"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52565" stop="52291"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E223449" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTGCAGGCACAGGTGGACGCTAGAACTACAGGTTCGTTGTTGCAGCTATCCGGACATCAGTATTCATCCGGAGTTTGGTAGGTCCTCATGCTTTCGAGGATGCTACTGTTTTACATTCTAGCGTAGTTTTAGAGTTGAGCTAGCGGAGCATGTTCCACTAGCGTTTCTTTCCTGTTTTGGTTCAAACTTTGTATTGGTGCTATTTTGGCCGATATACAATTAATACTTAATGAATTATTCCTTTCAGTTGCTTATCTCTTAAATGTTAGATGGTT</gDNA_template>
            <first_frame> V  Q  A  Q  V  D  A  R  T  T  G  S  L  L  Q  L  S  G  H  Q  Y  S  S  G  V  W  *  V  L  M  L  S  R  M  L  L  F  Y  I  L  A  *  F  *  S  *  A  S  G  A  C  S  T  S  V  S  F  L  F  W  F  K  L  C  I  G  A  I  L  A  D  I  Q  L  I  L  N  E  L  F  L  S  V  A  Y  L  L  N  V  R  W   </first_frame>
            <second_frame>  C  R  H  R  W  T  L  E  L  Q  V  R  C  C  S  Y  P  D  I  S  I  H  P  E  F  G  R  S  S  C  F  R  G  C  Y  C  F  T  F  *  R  S  F  R  V  E  L  A  E  H  V  P  L  A  F  L  S  C  F  G  S  N  F  V  L  V  L  F  W  P  I  Y  N  *  Y  L  M  N  Y  S  F  Q  L  L  I  S  *  M  L  D  G  </second_frame>
            <third_frame>   A  G  T  G  G  R  *  N  Y  R  F  V  V  A  A  I  R  T  S  V  F  I  R  S  L  V  G  P  H  A  F  E  D  A  T  V  L  H  S  S  V  V  L  E  L  S  *  R  S  M  F  H  *  R  F  F  P  V  L  V  Q  T  L  Y  W  C  Y  F  G  R  Y  T  I  N  T  *  *  I  I  P  F  S  C  L  S  L  K  C  *  M  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06SLm0098A22.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="58899" PGL_stop="57114"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="58883" e_stop="58837"/>
            <exon e_start="57878" e_stop="57685"/>
            <exon e_start="57608" e_stop="57564"/>
            <exon e_start="57511" e_stop="57153"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.945" e_score="0.894"/>
          <exon-intron don_prob="0.979" acc_prob="0.000" e_score="0.979"/>
          <exon-intron don_prob="0.000" acc_prob="0.950" e_score="0.533"/>
          <exon-only e_score="0.897"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.894">
            <gDNA_exon_boundary e_start="58883" e_stop="58837" e_length="47"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.945">
            <gDNA_intron_boundary i_start="58836" i_stop="57879" i_length="958"/>
          </intron>
          <exon e_serial="2" e_score="0.979">
            <gDNA_exon_boundary e_start="57878" e_stop="57685" e_length="194"/>
          </exon>
          <intron i_serial="2" don_prob="0.979" acc_prob="0.000">
            <gDNA_intron_boundary i_start="57684" i_stop="57609" i_length="76"/>
          </intron>
          <exon e_serial="3" e_score="0.533">
            <gDNA_exon_boundary e_start="57608" e_stop="57564" e_length="45"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.950">
            <gDNA_intron_boundary i_start="57563" i_stop="57512" i_length="52"/>
          </intron>
          <exon e_serial="4" e_score="0.897">
            <gDNA_exon_boundary e_start="57511" e_stop="57153" e_length="359"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58883" stop="58837"/>
              <exon start="57878" stop="57685"/>
              <exon start="57608" stop="57564"/>
              <exon start="57511" stop="57153"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E538156" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58883" stop="58837"/>
              <exon start="57878" stop="57685"/>
              <exon start="57608" stop="57564"/>
              <exon start="57511" stop="57191"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E538151" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58881" stop="58837"/>
              <exon start="57878" stop="57685"/>
              <exon start="57608" stop="57564"/>
              <exon start="57511" stop="57325"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268096" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAGAAAACCAACCATGCAACTCTTGGCCAGCAGCTGCAAAGAATTTG : AGTCATTTATCATTTCACCGAGTCCCGGGCCGGGTAATGTTCGTGCGGAGTTTCTTGCATATGTCACTGAGTCCCTCACTAGAGGGCCGGGTATGTATATTATATATATGATTGGTGATGAGGATGGTTATGATGATGATGATGACGGAGATGATGTGATGACTATTTCACCGAGTCCCTCACTAGAGGGTCGG : ATAATGATGATTATTTTGCCGATTCCCTTACTAGGAAAGCTGGAC : CGATATCTTGTTTCGAGCTCCACTGTTCCGGAGCCCAGTCGTTTTGGTACATAACTTTTGTGTAGTCTTTTGCTTGTCTATGGGTATGGCGGGGCCCTGTCTCGTCGAGTTTCACTACTGTACTCTTAGAGGTATGTAGACATTGTGTGGGTTGTATATATATGTTTTGGATAATGGTCTGGACATGGTTTGTTTGGGATGTACGCTTGTACAAGGGCAGCCTTGTCGGCTGCATACATCATTGTGTATGGTGTAGTGGCAGCCTTGTCGGCTGCGTATGCTATTATGCTTTGGATAGTGGCGGCCTTGTCGGCTCGCGTATGATGTTACGGTTGAATGGTTATGACTCCTTATGAGAC</gDNA_template>
            <first_frame> E  K  T  N  H  A  T  L  G  Q  Q  L  Q  R  I  * :   V  I  Y  H  F  T  E  S  R  A  G  *  C  S  C  G  V  S  C  I  C  H  *  V  P  H  *  R  A  G  Y  V  Y  Y  I  Y  D  W  *  *  G  W  L  *  *  *  *  *  R  R  *  C  D  D  Y  F  T  E  S  L  T  R  G  S   : D  N  D  D  Y  F  A  D  S  L  T  R  K  A  G   : P  I  S  C  F  E  L  H  C  S  G  A  Q  S  F  W  Y  I  T  F  V  *  S  F  A  C  L  W  V  W  R  G  P  V  S  S  S  F  T  T  V  L  L  E  V  C  R  H  C  V  G  C  I  Y  M  F  W  I  M  V  W  T  W  F  V  W  D  V  R  L  Y  K  G  S  L  V  G  C  I  H  H  C  V  W  C  S  G  S  L  V  G  C  V  C  Y  Y  A  L  D  S  G  G  L  V  G  S  R  M  M  L  R  L  N  G  Y  D  S  L  *  D </first_frame>
            <second_frame>  R  K  P  T  M  Q  L  L  A  S  S  C  K  E  F   : E  S  F  I  I  S  P  S  P  G  P  G  N  V  R  A  E  F  L  A  Y  V  T  E  S  L  T  R  G  P  G  M  Y  I  I  Y  M  I  G  D  E  D  G  Y  D  D  D  D  D  G  D  D  V  M  T  I  S  P  S  P  S  L  E  G  R  :  I  M  M  I  I  L  P  I  P  L  L  G  K  L  D  :  R  Y  L  V  S  S  S  T  V  P  E  P  S  R  F  G  T  *  L  L  C  S  L  L  L  V  Y  G  Y  G  G  A  L  S  R  R  V  S  L  L  Y  S  *  R  Y  V  D  I  V  W  V  V  Y  I  C  F  G  *  W  S  G  H  G  L  F  G  M  Y  A  C  T  R  A  A  L  S  A  A  Y  I  I  V  Y  G  V  V  A  A  L  S  A  A  Y  A  I  M  L  W  I  V  A  A  L  S  A  R  V  *  C  Y  G  *  M  V  M  T  P  Y  E   </second_frame>
            <third_frame>   E  N  Q  P  C  N  S  W  P  A  A  A  K  N  L  :  S  H  L  S  F  H  R  V  P  G  R  V  M  F  V  R  S  F  L  H  M  S  L  S  P  S  L  E  G  R  V  C  I  L  Y  I  *  L  V  M  R  M  V  M  M  M  M  M  T  E  M  M  *  *  L  F  H  R  V  P  H  *  R  V  G :   *  *  *  L  F  C  R  F  P  Y  *  E  S  W  T :   D  I  L  F  R  A  P  L  F  R  S  P  V  V  L  V  H  N  F  C  V  V  F  C  L  S  M  G  M  A  G  P  C  L  V  E  F  H  Y  C  T  L  R  G  M  *  T  L  C  G  L  Y  I  Y  V  L  D  N  G  L  D  M  V  C  L  G  C  T  L  V  Q  G  Q  P  C  R  L  H  T  S  L  C  M  V  *  W  Q  P  C  R  L  R  M  L  L  C  F  G  *  W  R  P  C  R  L  A  Y  D  V  T  V  E  W  L  *  L  L  M  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0098A22.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="58882" stop="58837"/>
                    <exon start="57878" stop="57685"/>
                    <exon start="57608" stop="57564"/>
                    <exon start="57511" stop="57458"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>336</number_coding_nucleotides>
                  <number_encoded_amino_acids>112</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RKPTMQLLASSCKEFESFIISPSPGPGNVRAEFLAYVTESLTRGPGMYIIYMIGDEDGYDDDDDGDDVMTISPSPSLEGRIMMIILPIPLLGKLDRYLVSSSTVPEPSRFGT*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0098A22.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="57446" stop="57156"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>288</number_coding_nucleotides>
                  <number_encoded_amino_acids>96</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SFACLWVWRGPVSSSFTTVLLEVCRHCVGCIYMFWIMVWTWFVWDVRLYKGSLVGCIHHCVWCSGSLVGCVCYYALDSGGLVGSRMMLRLNGYDSL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="58899" e_stop="58837"/>
            <exon e_start="58417" e_stop="58413"/>
            <exon e_start="58278" e_stop="58232"/>
            <exon e_start="58180" e_stop="58166"/>
            <exon e_start="57878" e_stop="57858"/>
            <exon e_start="57523" e_stop="57114"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.980" e_score="0.968"/>
          <exon-intron don_prob="0.000" acc_prob="0.751" e_score="0.600"/>
          <exon-intron don_prob="0.995" acc_prob="0.000" e_score="0.957"/>
          <exon-intron don_prob="0.816" acc_prob="0.945" e_score="0.600"/>
          <exon-intron don_prob="0.000" acc_prob="0.572" e_score="0.524"/>
          <exon-only e_score="0.898"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.968">
            <gDNA_exon_boundary e_start="58899" e_stop="58837" e_length="63"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.980">
            <gDNA_intron_boundary i_start="58836" i_stop="58418" i_length="419"/>
          </intron>
          <exon e_serial="2" e_score="0.600">
            <gDNA_exon_boundary e_start="58417" e_stop="58413" e_length="5"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.751">
            <gDNA_intron_boundary i_start="58412" i_stop="58279" i_length="134"/>
          </intron>
          <exon e_serial="3" e_score="0.957">
            <gDNA_exon_boundary e_start="58278" e_stop="58232" e_length="47"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="0.000">
            <gDNA_intron_boundary i_start="58231" i_stop="58181" i_length="51"/>
          </intron>
          <exon e_serial="4" e_score="0.600">
            <gDNA_exon_boundary e_start="58180" e_stop="58166" e_length="15"/>
          </exon>
          <intron i_serial="4" don_prob="0.816" acc_prob="0.945">
            <gDNA_intron_boundary i_start="58165" i_stop="57879" i_length="287"/>
          </intron>
          <exon e_serial="5" e_score="0.524">
            <gDNA_exon_boundary e_start="57878" e_stop="57858" e_length="21"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.572">
            <gDNA_intron_boundary i_start="57857" i_stop="57524" i_length="334"/>
          </intron>
          <exon e_serial="6" e_score="0.898">
            <gDNA_exon_boundary e_start="57523" e_stop="57114" e_length="410"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58899" stop="58837"/>
              <exon start="58417" stop="58413"/>
              <exon start="58278" stop="58232"/>
              <exon start="58180" stop="58166"/>
              <exon start="57878" stop="57858"/>
              <exon start="57523" stop="57114"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543103" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGCAGCCATGGAAATGGAGAAAACCAACCATGCAACTCTTGGCCAGCAGCTGCAAAGAATTTG : TTTGG : ATTTATAGCTTGAGCAGTAAATATTGGACGTGCGACTCGACTATACG : GCGAATAACGGACAG : AGTCATTTATCATTTCACCGA : GTACATGTGTAGCGATATCTTGTTTCGAGCTCCACTGTTCCGGAGCCCAGTCGTTTTGGTACATAACTTTTGTGTAGTCTTTTGCTTGTCTATGGGTATGGCGGGGCCCTGTCTCGTCGAGTTTCACTACTGTACTCTTAGAGGTATGTAGACATTGTGTGGGTTGTATATATATGTTTTGGATAATGGTCTGGACATGGTTTGTTTGGGATGTACGCTTGTACAAGGGCAGCCTTGTCGGCTGCATACATCATTGTGTATGGTGTAGTGGCAGCCTTGTCGGCTGCGTATGCTATTATGCTTTGGATAGTGGCGGCCTTGTCGGCTCGCGTATGATGTTACGGTTGAATGGTTATGACTCCTTATGAGACAGGTTCACTTTATATATATATATATATGTCGTTGGGGTT</gDNA_template>
            <first_frame> G  S  H  G  N  G  E  N  Q  P  C  N  S  W  P  A  A  A  K  N  L  :  F  G :   F  I  A  *  A  V  N  I  G  R  A  T  R  L  Y   : G  E  *  R  T   : E  S  F  I  I  S  P   : S  T  C  V  A  I  S  C  F  E  L  H  C  S  G  A  Q  S  F  W  Y  I  T  F  V  *  S  F  A  C  L  W  V  W  R  G  P  V  S  S  S  F  T  T  V  L  L  E  V  C  R  H  C  V  G  C  I  Y  M  F  W  I  M  V  W  T  W  F  V  W  D  V  R  L  Y  K  G  S  L  V  G  C  I  H  H  C  V  W  C  S  G  S  L  V  G  C  V  C  Y  Y  A  L  D  S  G  G  L  V  G  S  R  M  M  L  R  L  N  G  Y  D  S  L  *  D  R  F  T  L  Y  I  Y  I  Y  V  V  G  V </first_frame>
            <second_frame>  A  A  M  E  M  E  K  T  N  H  A  T  L  G  Q  Q  L  Q  R  I  C :   L   : D  L  *  L  E  Q  *  I  L  D  V  R  L  D  Y  T  :  A  N  N  G  Q  :  S  H  L  S  F  H  R  :  V  H  V  *  R  Y  L  V  S  S  S  T  V  P  E  P  S  R  F  G  T  *  L  L  C  S  L  L  L  V  Y  G  Y  G  G  A  L  S  R  R  V  S  L  L  Y  S  *  R  Y  V  D  I  V  W  V  V  Y  I  C  F  G  *  W  S  G  H  G  L  F  G  M  Y  A  C  T  R  A  A  L  S  A  A  Y  I  I  V  Y  G  V  V  A  A  L  S  A  A  Y  A  I  M  L  W  I  V  A  A  L  S  A  R  V  *  C  Y  G  *  M  V  M  T  P  Y  E  T  G  S  L  Y  I  Y  I  Y  M  S  L  G   </second_frame>
            <third_frame>   Q  P  W  K  W  R  K  P  T  M  Q  L  L  A  S  S  C  K  E  F   : V  W  :  I  Y  S  L  S  S  K  Y  W  T  C  D  S  T  I  R :   R  I  T  D  R :   V  I  Y  H  F  T  E :   Y  M  C  S  D  I  L  F  R  A  P  L  F  R  S  P  V  V  L  V  H  N  F  C  V  V  F  C  L  S  M  G  M  A  G  P  C  L  V  E  F  H  Y  C  T  L  R  G  M  *  T  L  C  G  L  Y  I  Y  V  L  D  N  G  L  D  M  V  C  L  G  C  T  L  V  Q  G  Q  P  C  R  L  H  T  S  L  C  M  V  *  W  Q  P  C  R  L  R  M  L  L  C  F  G  *  W  R  P  C  R  L  A  Y  D  V  T  V  E  W  L  *  L  L  M  R  Q  V  H  F  I  Y  I  Y  I  C  R  W  G  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0098A22.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="58897" stop="58837"/>
                    <exon start="58417" stop="58413"/>
                    <exon start="58278" stop="58232"/>
                    <exon start="58180" stop="58166"/>
                    <exon start="57878" stop="57858"/>
                    <exon start="57523" stop="57373"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>297</number_coding_nucleotides>
                  <number_encoded_amino_acids>99</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QPWKWRKPTMQLLASSCKEFVWIYSLSSKYWTCDSTIRRITDRVIYHFTEYMCSDILFRAPLFRSPVVLVHNFCVVFCLSMGMAGPCLVEFHYCTLRGM*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0098A22.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="57446" stop="57156"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>288</number_coding_nucleotides>
                  <number_encoded_amino_acids>96</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SFACLWVWRGPVSSSFTTVLLEVCRHCVGCIYMFWIMVWTWFVWDVRLYKGSLVGCIHHCVWCSGSLVGCVCYYALDSGGLVGSRMMLRLNGYDSL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="81277" PGL_stop="81669"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="81277" e_stop="81669"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="81277" e_stop="81669" e_length="393"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81277" stop="81669"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329330" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCAACACGAAGCTTGTGCAGTGGATTAAAATGTTACTGGAAGAGGAGGAGGAGAAGAGGAGGGTATGAGAGGCTAAATGGGTCGGGTTGTATGAGGATGAATCGGGTCGGTTTGGGGAAACGAAGGTTCTGGAAGATAAATCTAAAGCGGAGAGTGAAGTTGAGTCGGAATTATTTGAAATTTTGGCCGAAGAAATTCGTAATGAATGTGCGGGATGCGTATGTGAATATGATGATGAAGATTGCTAATTCCAAGTGTATGAGTAGTGGGGTTGGTGGTGGATTCGGTACGAGGCAGTTGAAAGAGTATGATGAGAAGGTGCTCGTACAGATTTACAAGTCCATGATTATTGCGCAGGGACAGTTAATTGGTGATGGTGATGTAAAATTTGGC</gDNA_template>
            <first_frame> S  T  R  S  L  C  S  G  L  K  C  Y  W  K  R  R  R  R  R  G  G  Y  E  R  L  N  G  S  G  C  M  R  M  N  R  V  G  L  G  K  R  R  F  W  K  I  N  L  K  R  R  V  K  L  S  R  N  Y  L  K  F  W  P  K  K  F  V  M  N  V  R  D  A  Y  V  N  M  M  M  K  I  A  N  S  K  C  M  S  S  G  V  G  G  G  F  G  T  R  Q  L  K  E  Y  D  E  K  V  L  V  Q  I  Y  K  S  M  I  I  A  Q  G  Q  L  I  G  D  G  D  V  K  F  G </first_frame>
            <second_frame>  Q  H  E  A  C  A  V  D  *  N  V  T  G  R  G  G  G  E  E  E  G  M  R  G  *  M  G  R  V  V  *  G  *  I  G  S  V  W  G  N  E  G  S  G  R  *  I  *  S  G  E  *  S  *  V  G  I  I  *  N  F  G  R  R  N  S  *  *  M  C  G  M  R  M  *  I  *  *  *  R  L  L  I  P  S  V  *  V  V  G  L  V  V  D  S  V  R  G  S  *  K  S  M  M  R  R  C  S  Y  R  F  T  S  P  *  L  L  R  R  D  S  *  L  V  M  V  M  *  N  L   </second_frame>
            <third_frame>   N  T  K  L  V  Q  W  I  K  M  L  L  E  E  E  E  E  K  R  R  V  *  E  A  K  W  V  G  L  Y  E  D  E  S  G  R  F  G  E  T  K  V  L  E  D  K  S  K  A  E  S  E  V  E  S  E  L  F  E  I  L  A  E  E  I  R  N  E  C  A  G  C  V  C  E  Y  D  D  E  D  C  *  F  Q  V  Y  E  *  W  G  W  W  W  I  R  Y  E  A  V  E  R  V  *  *  E  G  A  R  T  D  L  Q  V  H  D  Y  C  A  G  T  V  N  W  *  W  *  C  K  I  W  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0098A22.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="81277" stop="81669"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>393</number_coding_nucleotides>
                  <number_encoded_amino_acids>131</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>STRSLCSGLKCYWKRRRRRGGYERLNGSGCMRMNRVGLGKRRFWKINLKRRVKLSRNYLKFWPKKFVMNVRDAYVNMMMKIANSKCMSSGVGGGFGTRQLKEYDEKVLVQIYKSMIIAQGQLIGDGDVKFG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="93606" PGL_stop="94438"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="93606" e_stop="93667"/>
            <exon e_start="93783" e_stop="93899"/>
            <exon e_start="93991" e_stop="94072"/>
            <exon e_start="94179" e_stop="94274"/>
            <exon e_start="94365" e_stop="94438"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.987" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.810" acc_prob="0.643" e_score="1.000"/>
          <exon-intron don_prob="0.287" acc_prob="0.919" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.973" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="93606" e_stop="93667" e_length="62"/>
          </exon>
          <intron i_serial="1" don_prob="0.987" acc_prob="0.996">
            <gDNA_intron_boundary i_start="93668" i_stop="93782" i_length="115"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="93783" e_stop="93899" e_length="117"/>
          </exon>
          <intron i_serial="2" don_prob="0.810" acc_prob="0.643">
            <gDNA_intron_boundary i_start="93900" i_stop="93990" i_length="91"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="93991" e_stop="94072" e_length="82"/>
          </exon>
          <intron i_serial="3" don_prob="0.287" acc_prob="0.919">
            <gDNA_intron_boundary i_start="94073" i_stop="94178" i_length="106"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="94179" e_stop="94274" e_length="96"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.973">
            <gDNA_intron_boundary i_start="94275" i_stop="94364" i_length="90"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="94365" e_stop="94438" e_length="74"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93606" stop="93667"/>
              <exon start="93783" stop="93899"/>
              <exon start="93991" stop="94072"/>
              <exon start="94179" stop="94274"/>
              <exon start="94365" stop="94438"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302961" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGGACTCAGCAGTTTCCTGTGGGAACAAGTTCGTTCAGAAACATTCTTCAGCCAGCACAAAG : GCTGACCAAAGAACTGTAACACTGATGAAAGAAGAGAATCGCATCGTCAGTGAGGAACTTCAAAGAAGGTACATGATGCAGAACACATTTGTTGACCAACAGCAACAAGACATCAAG : GACCTGAAGCAAACTCTTTTGACTACAAAAGCGGGTATGCAGTTCATGCAAATGAAGTTTCATGAGGAAATGCAAAATATTG : GCATCCACATACATGGCCTAGCACACGCAGCTTCTGGTTATCATAGAGTTCTTGAAGAAAATCGCAGGCTTTACAATCAAGTGCAAGACCTTAAAG : GAAGCATAAGGGTTTATTGTCGAGTAAGACCCTTTTTGCCTGGGCAATCAAGTTATATCAGTAATGTCGATCAT</gDNA_template>
            <first_frame> R  T  Q  Q  F  P  V  G  T  S  S  F  R  N  I  L  Q  P  A  Q  R :   L  T  K  E  L  *  H  *  *  K  K  R  I  A  S  S  V  R  N  F  K  E  G  T  *  C  R  T  H  L  L  T  N  S  N  K  T  S  R :   T  *  S  K  L  F  *  L  Q  K  R  V  C  S  S  C  K  *  S  F  M  R  K  C  K  I  L  :  A  S  T  Y  M  A  *  H  T  Q  L  L  V  I  I  E  F  L  K  K  I  A  G  F  T  I  K  C  K  T  L  K  :  E  A  *  G  F  I  V  E  *  D  P  F  C  L  G  N  Q  V  I  S  V  M  S  I   </first_frame>
            <second_frame>  G  L  S  S  F  L  W  E  Q  V  R  S  E  T  F  F  S  Q  H  K   : G  *  P  K  N  C  N  T  D  E  R  R  E  S  H  R  Q  *  G  T  S  K  K  V  H  D  A  E  H  I  C  *  P  T  A  T  R  H  Q   : G  P  E  A  N  S  F  D  Y  K  S  G  Y  A  V  H  A  N  E  V  S  *  G  N  A  K  Y  W :   H  P  H  T  W  P  S  T  R  S  F  W  L  S  *  S  S  *  R  K  S  Q  A  L  Q  S  S  A  R  P  *  R :   K  H  K  G  L  L  S  S  K  T  L  F  A  W  A  I  K  L  Y  Q  *  C  R  S  </second_frame>
            <third_frame>   D  S  A  V  S  C  G  N  K  F  V  Q  K  H  S  S  A  S  T  K  :  A  D  Q  R  T  V  T  L  M  K  E  E  N  R  I  V  S  E  E  L  Q  R  R  Y  M  M  Q  N  T  F  V  D  Q  Q  Q  Q  D  I  K  :  D  L  K  Q  T  L  L  T  T  K  A  G  M  Q  F  M  Q  M  K  F  H  E  E  M  Q  N  I   : G  I  H  I  H  G  L  A  H  A  A  S  G  Y  H  R  V  L  E  E  N  R  R  L  Y  N  Q  V  Q  D  L  K   : G  S  I  R  V  Y  C  R  V  R  P  F  L  P  G  Q  S  S  Y  I  S  N  V  D  H </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0098A22.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="93608" stop="93667"/>
                    <exon start="93783" stop="93899"/>
                    <exon start="93991" stop="94072"/>
                    <exon start="94179" stop="94274"/>
                    <exon start="94365" stop="94438"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>429</number_coding_nucleotides>
                  <number_encoded_amino_acids>143</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DSAVSCGNKFVQKHSSASTKADQRTVTLMKEENRIVSEELQRRYMMQNTFVDQQQQDIKDLKQTLLTTKAGMQFMQMKFHEEMQNIGIHIHGLAHAASGYHRVLEENRRLYNQVQDLKGSIRVYCRVRPFLPGQSSYISNVDH</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 114 chains have been computed
$ 
$ memory statistics:
$ 118040 bytes spliced alignments in total
$ 23 spliced alignments have been stored
$ 5132 bytes was the average size of a spliced alignment
$ 11520 bytes predicted gene locations in total
$ 5 predicted gene locations have been stored
$ 2304 bytes was the average size of a predicted gene location
$ 4 megabytes was the average size of the backtrace matrix
$ 143 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-16 11:37:10
-->
