<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-16 11:43:51"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C06SLm0098A22-k2LuV/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C06SLm0098A22-k2LuV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0098A22-k2LuV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U318193" ref_strand="+" ref_description="SGN-U318193        Tomato 200607 #1 [16 ESTs aligned] arabidopsis/peptide: | Symbol: None | importin alpha-1 subunit, putative (IMPA1), similar to importin alpha-1 subunit (Karyopherin alpha-1 subunit, KAP alpha) (Arabidopsis thaliana) SWISS-PROT:Q96321 | chr3:2120330-2124137 FORWARD | Aliases: F3E22.14(evalue: 0, score=818) genbank/nr: importin(evalue: 0, score=1014)">
      <seq>ctttttataaacaatccaaattttcccctaaccccgattccactctcaattgtcttcttcctcattttcctatttaacaaaactcaatttcgcatttcgaattcctcaaactgaattttgttcatagagattatcgattatcgagttgagttcagaatttcgattcaccggagctatgtcactgaggccgaactcgagaacggaggctcgccggagcaggtacaaagttgccgtcgatgcggaggaaggacggagaagaagggaagataacatggttgagatccggaagaataaaagagaagagaatttgcttaagaagcgtcgtgaaggtttactacaagctcagcagtttcctagcactgctgctgtttctcaccttgataagaagctggagactcttcctgaattgattgctggggtttggtctgatgacagcagtttgcaacttgaatgtacaacacaattccggaaactgctttcaattgaacgcaatcctcctatagaggaagtgatacagtctggggtagttcctcgctttgttgaatttcttgctcgagatgactatcctcaactgcagtttgaggcagcgtgggctcttacaaatattgcatctggtacatcagaaaacactaaagttgtgattgattatggttctgtcccaattttcatcagacttctaagttcaccaagtgatgatgtccgtgaacaggccgtttgggctttgggaaatattgctggtgactcgcccaagtatcgtgaccttgtgcttggccatggagctttagtggcattgctggcacaatttaatgagcaggcaaagctatctatgttgagaaatgctacctggacattgtcaaacttttgtaggggaaaacctcagccactgttcgagcagacaaaagcggcactccccactcttggtcgccttatccactcaaatgatgaagaagtcttgacagatgcatgctgggctctttcatatctttctgatggaactaatgacaaaatccaggctgttattgaagctggagtgtgttcccgccttgttgagctgctacttcattcttcaccatctgttctcattcctgccttgcgcactgttggtaacatagtcacaggagacgatatccaaactcaggttatgattgaccatcatgctcttccctgccttgttaacctgttgacgcaaaattacaaaaaaagcattaaaaaggaagcttgttggacaatctcgaacattacagctggtaatagaaatcaaattcagattgtgatcgaggctggcattattgcccctcttgtatatctgctacaaaatgctgaatttgagataaagaaagaggctgcttgggcaatttcaaatgctacgtccggtggaaatcatgatcaaatcaagttcttggtgagccaaggttgtataaaaccattgtgtgatcttctggtatgtcctgacccaagaattgtcactgtctgtttggaagggcttgagaatattctgaagattggggaagctgataaggatctaggtaacacagaaggcgtgaatgtttatgcccagttaatcgacgaggctgaaggtctagaaaagattgaaaacctccaaagccatgacaacactgaaatctatgagaaagcagtgaagatcctcgaaacttattggttggaggaggaagatgtgccggtttcattaattgaagatcaattcgaatttggaggggccgatatatctcttccatcgggaggatttaacttcagttgatggggtttggctagcaggttagtgagtggttttaaattggagaaacatcctctattaaactatgtgtagagagagttgtcatctacttgggggaggattggatttttacatatattttcttctatttattgatggagttggtgttctataagttaccttttcccctagactagactattggtggtggtggatattatatatatatatgtgtgtgtgtatacatgttaatgtacaagtcatacctgggctctccatgaccttatttggtgtaaacatatacttgtttccatctttttgtacccttatatggcttgtttccaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0098A22-k2LuV/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06SLm0098A22.1" temp_strand="+" temp_description="C06SLm0098A22.1  AC219226.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0098A22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12580" stop="19297"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12880" g_stop="13267" g_length="388"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="388" r_length="388" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13268" i_stop="15342" i_length="2075">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15343" g_stop="15439" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="485" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15440" i_stop="15564" i_length="125">
            <donor d_prob="0.880" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15565" g_stop="15656" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="486" r_stop="577" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15657" i_stop="15746" i_length="90">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15747" g_stop="15878" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="578" r_stop="709" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15879" i_stop="16156" i_length="278">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="16157" g_stop="16342" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="710" r_stop="895" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="16343" i_stop="16429" i_length="87">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="16430" g_stop="16593" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="896" r_stop="1059" r_length="164" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="16594" i_stop="16689" i_length="96">
            <donor d_prob="0.914" d_score="1.00"/>
            <acceptor a_prob="0.500" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="16690" g_stop="16768" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1060" r_stop="1138" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="16769" i_stop="17620" i_length="852">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.941" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="17621" g_stop="17749" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="1139" r_stop="1267" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="17750" i_stop="17884" i_length="135">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="17885" g_stop="18012" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="1268" r_stop="1395" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="18013" i_stop="18092" i_length="80">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.763" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="18093" g_stop="18460" g_length="368"/>
          <reference_exon_boundary r_type="cDNA" r_start="1396" r_stop="1763" r_length="368" r_score="0.992"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="18461" i_stop="18697" i_length="237">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="18698" g_stop="18996" g_length="299"/>
          <reference_exon_boundary r_type="cDNA" r_start="1764" r_stop="2078" r_length="315" r_score="0.863"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="2079" polyA_stop="2096"/>
      <MATCH_line gen_id="C06SLm0098A22.1" gen_strand="+" ref_id="SGN-U318193" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>2062</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0098A22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U318193" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12880" e_stop="13267"/>
          <exon e_start="15343" e_stop="15439"/>
          <exon e_start="15565" e_stop="15656"/>
          <exon e_start="15747" e_stop="15878"/>
          <exon e_start="16157" e_stop="16342"/>
          <exon e_start="16430" e_stop="16593"/>
          <exon e_start="16690" e_stop="16768"/>
          <exon e_start="17621" e_stop="17749"/>
          <exon e_start="17885" e_stop="18012"/>
          <exon e_start="18093" e_stop="18460"/>
          <exon e_start="18698" e_stop="18996"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTTAGAAACAATCCAAATTTTCCCCAAACCCTGATTCCACTCTCAATTGTCTTCTTCCTCATTTTCCTATTTAACAAAACTCAATTTCGCATTTCGAATTCCTCAAACTGAATTTTGTTCATAGAGATTATCGATTATCGAGTTGAGTTCAGAATTTCGATTCACCGGAGCTATGTCACTGAGGCCGAACTCGAGAACGGAGGCTCGCCGGAGCAGGTACAAAGTTGCCGTCGATGCGGAGGAAGGACGGAGAAGAAGGGAAGATAACATGGTTGAGATCCGGAAGAATAAAAGAGAAGAGAATTTGCTTAAGAAGCGTCGTGAAGGTTTACTACAAGCTCAGCAGTTTCCTAGCACTGCTGCTGTTTCTCACCTTGATAAGAAGGTATAGATTTTTTTCGTTGATTAACTTTTAGTTTCTTAGATACATATATTTTGATCGAATTTGATTGTCTGATTTGAATTTTCAAGTGCGATCAATGTTTACTCAGTGTGTGTCCTTGTGAGCTTAATTCGTTACTTCGATTTTTTCGTTTAGTTACTTGCTTCATTCAGTTCTAAACCTCAATTATGCTTAATTGATTCAATTATTTGTTTGAAGTTCAAGTGTGATCACTGTTTACTCGGTTTTCTCTTTTACGAGCTTAGTTCAGTACTTCGTATTTTTTGTTATTTAAATGCTTAATTTAGTTCTTAGATTCACTTATGCTTATTGAAATCAATTATTTGATTGAAATGCAAGTGCGTCAATGTTTACTCTCGGTGTTCGTCCTATCTAAGATAATCGGCTACTTGTATTTTTCGTTATTTAAATGCTTCATTCAGTTCTTACCTTTGCTTATCCTCATTGGATTCAATTGTTTTATCAAGACTAATTCATCTTTAGTTGCAAAGTGCAGCGCCAATTAATACCAAAAAATTAAAATATTTAGTTGCATATATATATATATATATATTATATATATATATATATAAAATCAAAATCTCAATAGAAGTAGCTTTGAAGATGAAGGAGGAGGAGGAGGAAAACGAAACCAAGGAAGAAGGAAAGAAGAAATACGTTGTGGTTGGACTTTGGAGTCGCCGGAAAAGTCTGACTGGTCATTGCCTCACTAGAGAAGTCTAGTCGAGTCGATGGGTTGGAGTCAAGTTGTAGTTTACGAATGCAACTGTGCAAATTTGGAAAGAAAACCCTAAAATTTAACTTTTAAAACACTACATTTTTTTTTTGAAATAGGTAACTTTCTTTTAAAACCTTAAATTGATTGTTTTTTTTTACGAAAATACAAAAAGTGACTCCTTGGTCGCCATGGCGTTGCCTTTTGAAGATCGCCTCGCCACAAAGATAATAGGCGCTGAAGGATCGCCTTGCCTTGCCTCTTGCCATTGATGATGAGACGATTACCTTCCACGACATTGTCTCAGCCGTATGATACCGATAGTGTCATAGGAATCAGTTATTTTATTTGCATGGCAAGTTCTATCAATTTTACATGGTGTCATCATTTCCAGCTTAATTTGCTACGCGTATTAATTACTTGCTCTATTCAGTTCTTAGCCTCACTAGTCCTTATTGAATTCAATTGTTTATTTTAATTGCAAGTGCGATCAAGACTAATTCATCTTTTCTCTTTGAGCTTACTCAGCAGCGTGAATTTTTGTTAACTACTCTCAGTCTTATGATGCAGATATTGTGATCGGTTTCAGTTGCTTTAGTTGAATTGCAAGTGCTATCAATTTTTACTTTCCAGCATAATTTGCTACTTGTTTTTACCTACTTTCTCCATTCAGTTCTTAGCCTCACTAATCCTTATTGGATTCAATTGTGTATTTGAATTGCAACTGCGATCAGGACTAGTTGGTATTGATCATTTCTAGCATTTATTTTCATTAATTACTTGCTTCATTCTGTTCTTAGGCTGAATTATCCAATTCTATTTGCATTCAGTTTCTATTTGAATGGCTAGCGCGATCAATGTTTACTCAGTGTGCATTCTTTCTTCATTCAGTTCTAAGCCTCATTTTTCCTTGATGGATACAATCTTTTATTTGAATTGCTAGTGCAATCAATGGTTACTTGGTATTCATCCTTTCAAGCATAATTGGGTACTATTATTTTTTGGTAATTACCTGCTTCACTCAGTTCTTAAGGATAACTTTTTTTACTTGTTAGAGAAGCATAATGTTTTCAATAGTTAGGTATACAGTCTGCTTTGTTTCTCCCTTGTCCGCAAAGCAAAAATGACATAATCACTATTTGAAGAGTCAAAAAGGTATTTGAAAAATACTATTTAAGAAAAAGGAAGAAATCTATACACTGAAAGATTAGATTAGTTGATTTCTACTTCAAATATAATCATCCTTGCAGCTATGGAGGAGTAGCATTGCGCCAAAAATAATATCATGCTGCTCTAGCAACAAACTTATCTGATTCAATTTTATTGGTTTATAACCTTTCAGCTGGAGACTCTTCCTGAATTGATTGCTGGGGTTTGGTCTGATGACAGCAGTTTGCAACTTGAATGTACAACACAATTCCGGAAACTGCTTTCAATTGGTCAGTGTTGCTTTGCTTTTTTCCTAAATGTATTTCTGTTTGATCACCTTGACAATGAATGTTTTTCCTCTCTGTATCTTTGTGTCTTAATTAGTATGCGTGTTCACTTCTGGTTGTTTTGGCAGAACGCAATCCTCCTATAGAGGAAGTGATACAGTCTGGGGTAGTTCCTCGCTTTGTTGAATTTCTTGCTCGAGATGACTATCCTCAACTGCAGGTTTTTTTACAAAATCTATTATTTTTGTTTTTTGTTTTGCAGTTCCATCTTTATTTCTAATGTTTACATAATTGGCATTCTATAATCTAGTTTGAGGCAGCGTGGGCTCTTACAAATATTGCATCTGGTACATCAGAAAACACTAAAGTTGTGATTGATTATGGTTCTGTCCCAATTTTCATCAGACTTCTAAGTTCACCAAGTGATGATGTCCGTGAACAGGTAAAACTTTATATATAAGAGGGCTAAGCTTTCATGTTTCTTCTCATAATTGTCATGATATTATGTCTATTTTTCTTAAAAAAATTGGGGTTACGGGAAGGAGTAATGGGGGAGAGAATTACAAAGTGGAAATCAAACCCTCACTGGCAAGATGAAAGTTCAAGTATTCAACCAACTTAGCTACTAAGATTCTCCTGATATTGTATGTATTATGCCAATTTATTTCTGAGAAGTTAAAAATTCTTTTATTTTGATATTTTTTTTAAAAAAATTTATAGGCCGTTTGGGCTTTGGGAAATATTGCTGGTGACTCGCCCAAGTATCGTGACCTTGTGCTTGGCCATGGAGCTTTAGTGGCATTGCTGGCACAATTTAATGAGCAGGCAAAGCTATCTATGTTGAGAAATGCTACCTGGACATTGTCAAACTTTTGTAGGGGAAAACCTCAGCCACTGTTCGAGCAGGTTTGACTTTAAAGATAAAGTTTGTTTGATCTTTTCAGATATTTATATTACTTTTAAAGGTTATGCCTTTTAAAATTCATCGCGCAGACAAAAGCGGCACTCCCCACTCTTGGTCGCCTTATCCACTCAAATGATGAAGAAGTCTTGACAGATGCATGCTGGGCTCTTTCATATCTTTCTGATGGAACTAATGACAAAATCCAGGCTGTTATTGAAGCTGGAGTGTGTTCCCGCCTTGTTGAGCTGCTACTGTGAGTTATAGATCTTACTTTTGAGGGTTTGTCTTAGGCTTTCGATATGTTAAAATCATAAGTTTCTTACTCCCTTCATCTTTTTTTCGTGAGTAGTCATTCTTCACCATCTGTTCTCATTCCTGCCTTGCGCACTGTTGGTAACATAGTCACAGGAGACGATATCCAAACTCAGGTATTTATCATCCTCCCAGCCAATTTTTCATGTTTGATTTTTTTTTTTCGTTTTTCCCTCTTCTCATCCTTAATTGAGTCTTTGTGTAAACATGAATTCTCAATATCTAATCCATCAGTACGTCAGATGTATCTTCATCTTTTTGTTTAGGTAAATTATGCTGGTCAGATAAAAATACTTAAAAATCTAGCTTTCGTCAATGATAATTCAATTTTTGTAATAATTCTGATAGTCAACTATATCATAATCATGATATGAAAGAAAAGAGGAGTAAAGATTGGCTAGTCAATTAGTTCTCATTAAGTTTCTACCATGTTTAAGAGAGGTTACTCACGGAAGTCTTCGCTAATTCATCCGTGTACTGCAGTCAGTCTTCAGTTATCACGTTTGCCTACCTGAGTAGGGGGTTAGTGGTGTTTGGCTGTTATGATTATTTTTAGAATAAACTTTCCATTGCCGAACTGCTCACTGGGATAGTGTTGCACCACATATTTACGGAACAAATGGTGTTACATCTCTATTTGTTCTTAGGAGAAAAAATAGGGAGAGGAAATTTTCTAAATTTTTGGTCCCTGAAACGTAAGACGAGTGAAATTGAGTTAACTTCTTTGCTATCCTGTTATTCTCCTACCAAGGTAGGGAAGCTCTAATAGGGTAGTATTGTACGGCAGAGGCATGCTCTCTTTCAGTGAGGAGTTATTTGCAACCTTCCATTTTTGTTACCTCTCAGACGTAGTGGAAATAAAATGGACATAAAAACTACATCTTTTGGTTGTTGAAGCAAATTATGTCCTACCTAATTTATCAGCTGGAATCTTTTTTGGTGGACATTGATGAATCTATATTGTTTAGGTTATGATTGACCATCATGCTCTTCCCTGCCTTGTTAACCTGTTGACGCAAAATTACAAAAAAAGCATTAAAAAGGAAGCTTGTTGGACAATCTCGAACATTACAGCTGGTAATAGAAATCAAATTCAGGTATGTTGTATGGTAATTGACAATTTGTGCTTCTTTATCAATTGACAGAGAACTGAAAATAAGTGAAGAAAGAGAACCTTTGCAAGATGATTCAGTTTTGTATAATGATACTGAAAGGGGTTTTAATTGAAATAGATTGTGATCGAGGCTGGCATTATTGCCCCTCTTGTATATCTGCTACAAAATGCTGAATTTGAGATAAAGAAAGAGGCTGCTTGGGCAATTTCAAATGCTACGTCCGGTGGAAATCATGATCAAATCAAGTATGGTTCCTTTAGCATATTCAGTTTCATCTGCTTAACCTTACATCTAGTTTGAAGCTCACATGTAAATTGATTTCTAGGTTCTTGGTGAGCCAAGGTTGTATAAAACCATTGTGTGATCTTCTGGTATGTCCTGACCCAAGAATTGTCACTGTCTGCTTGGAAGGGCTTGAGAATATTCTGAAGATTGGGGAAGCTGATAAGGATCTAGGAAACACAGAAGGCGTGAATGTTTATGCCCAGTTAATCGACGAGGCTGAAGGTCTAGAAAAGATTGAAAACCTCCAAAGCCATGACAACACTGAAATCTATGAGAAAGCAGTGAAGATCCTCGAAACTTATTGGTTGGAGGAGGAAGATGTGCCGGTTTCATTAAATGAAGATCAATTCGAATTTGGAGGGGCCGATATATCTCTTCCATCGGGAGGATTTAACTTCAGTTGATGGGGTATGTTATTCTTCCCTTCTTTTTTATGATTATTTCCCCTCTGTTAACGACGGTTTCCTTTGAAAACTTTTGTTCTTTTGAGCACCTGTTTTATGGTGTAAATTATTTAGCATTAGGATGTGTTAAAATGGTGTTTGAGCGATGATGTAAAGCTAGTCAACCTTACCTTTGATTTAGCAAAAATGGTTTGTTGCAGTTAAAACTTGTGGTAGTTTCTTAATGTTTAATTCTTTCCAGGTTTGGCTAGCAGGTCAGTGAGTGGTTTTAAATTGGAGAAACATCCTCT-TTAAACTATGTGTAGAGAGAGTTGTCATCTACTTGGGGGAGGTTTGGA-TTTTACATATATTTTCTTCTATTTATTGATGGAGTTGGTGTTGTATAAGTTACTTTTTCCCCTAGACTAGACATATTGGTGGTGGTGG-------ATATATATA--------TGTATACATGTTAATGTACAAGTCATACGTGGGCTCTCCATGACATTATTTGGTGTAAACATATACTTGTTTCCATCTTTTTGTACCCTTATATGGCTTGTTTCC</genome_strand>
        <mrna_strand>CTTTTTATAAACAATCCAAATTTTCCCCTAACCCCGATTCCACTCTCAATTGTCTTCTTCCTCATTTTCCTATTTAACAAAACTCAATTTCGCATTTCGAATTCCTCAAACTGAATTTTGTTCATAGAGATTATCGATTATCGAGTTGAGTTCAGAATTTCGATTCACCGGAGCTATGTCACTGAGGCCGAACTCGAGAACGGAGGCTCGCCGGAGCAGGTACAAAGTTGCCGTCGATGCGGAGGAAGGACGGAGAAGAAGGGAAGATAACATGGTTGAGATCCGGAAGAATAAAAGAGAAGAGAATTTGCTTAAGAAGCGTCGTGAAGGTTTACTACAAGCTCAGCAGTTTCCTAGCACTGCTGCTGTTTCTCACCTTGATAAGAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGAGACTCTTCCTGAATTGATTGCTGGGGTTTGGTCTGATGACAGCAGTTTGCAACTTGAATGTACAACACAATTCCGGAAACTGCTTTCAATTG.............................................................................................................................AACGCAATCCTCCTATAGAGGAAGTGATACAGTCTGGGGTAGTTCCTCGCTTTGTTGAATTTCTTGCTCGAGATGACTATCCTCAACTGCAG..........................................................................................TTTGAGGCAGCGTGGGCTCTTACAAATATTGCATCTGGTACATCAGAAAACACTAAAGTTGTGATTGATTATGGTTCTGTCCCAATTTTCATCAGACTTCTAAGTTCACCAAGTGATGATGTCCGTGAACAG......................................................................................................................................................................................................................................................................................GCCGTTTGGGCTTTGGGAAATATTGCTGGTGACTCGCCCAAGTATCGTGACCTTGTGCTTGGCCATGGAGCTTTAGTGGCATTGCTGGCACAATTTAATGAGCAGGCAAAGCTATCTATGTTGAGAAATGCTACCTGGACATTGTCAAACTTTTGTAGGGGAAAACCTCAGCCACTGTTCGAGCAG.......................................................................................ACAAAAGCGGCACTCCCCACTCTTGGTCGCCTTATCCACTCAAATGATGAAGAAGTCTTGACAGATGCATGCTGGGCTCTTTCATATCTTTCTGATGGAACTAATGACAAAATCCAGGCTGTTATTGAAGCTGGAGTGTGTTCCCGCCTTGTTGAGCTGCTACT................................................................................................TCATTCTTCACCATCTGTTCTCATTCCTGCCTTGCGCACTGTTGGTAACATAGTCACAGGAGACGATATCCAAACTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATGATTGACCATCATGCTCTTCCCTGCCTTGTTAACCTGTTGACGCAAAATTACAAAAAAAGCATTAAAAAGGAAGCTTGTTGGACAATCTCGAACATTACAGCTGGTAATAGAAATCAAATTCAG.......................................................................................................................................ATTGTGATCGAGGCTGGCATTATTGCCCCTCTTGTATATCTGCTACAAAATGCTGAATTTGAGATAAAGAAAGAGGCTGCTTGGGCAATTTCAAATGCTACGTCCGGTGGAAATCATGATCAAATCAA................................................................................GTTCTTGGTGAGCCAAGGTTGTATAAAACCATTGTGTGATCTTCTGGTATGTCCTGACCCAAGAATTGTCACTGTCTGTTTGGAAGGGCTTGAGAATATTCTGAAGATTGGGGAAGCTGATAAGGATCTAGGTAACACAGAAGGCGTGAATGTTTATGCCCAGTTAATCGACGAGGCTGAAGGTCTAGAAAAGATTGAAAACCTCCAAAGCCATGACAACACTGAAATCTATGAGAAAGCAGTGAAGATCCTCGAAACTTATTGGTTGGAGGAGGAAGATGTGCCGGTTTCATTAATTGAAGATCAATTCGAATTTGGAGGGGCCGATATATCTCTTCCATCGGGAGGATTTAACTTCAGTTGATGGG.............................................................................................................................................................................................................................................GTTTGGCTAGCAGGTTAGTGAGTGGTTTTAAATTGGAGAAACATCCTCTATTAAACTATGTGTAGAGAGAGTTGTCATCTACTTGGGGGAGGATTGGATTTTTACATATATTTTCTTCTATTTATTGATGGAGTTGGTGTTCTATAAGTTACCTTTTCCCCTAGACTAGAC-TATTGGTGGTGGTGGATATTATATATATATATGTGTGTGTGTATACATGTTAATGTACAAGTCATACCTGGGCTCTCCATGACCTTATTTGGTGTAAACATATACTTGTTTCCATCTTTTTGTACCCTTATATGGCTTGTTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0098A22-k2LuV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U336426" ref_strand="+" ref_description="SGN-U336426        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | importin alpha-1 subunit, putative (IMPA1), similar to importin alpha-1 subunit (Karyopherin alpha-1 subunit, KAP alpha) (Arabidopsis thaliana) SWISS-PROT:Q96321 | chr3:2120330-2124137 FORWARD | Aliases: F3E22.14(evalue: 6e-114, score=231) genbank/nr: importin(evalue: 4e-140, score=267)">
      <seq>cgttattatcgagttgagttcagaatttcgattcaccggagctatgtcactgaggccgaactcgagaacggaggctcgccggagcaggtacaaagttgccgtagatgcggaggaaggacggagaagaagggaagataacatggttgagatccggaagaataaaagagaagagaatttgcttaagaagcgtcgtgaaggtttactacaagctcagcagtttcctagcactgctgctgtttctcaccttgataagaagctggagactcttcctgaattgattgctggggtttggtctgatgacagcagtttgcaacttgaatgtacaacacaattccggaaactgctttcaattgaacgcaatcctcctatagaggaagtgatacagtctggggtagttcctcgctttgttgaatttcttgctcgagatgactatcatcaactgcaggtttttttacaaaatctattatttttgttttttgttttgcagttcatctttatttctaatgttcacataattggcatcctataatctagtttgaggcagcgtgggctcttacaaatattgcgtctggtacatcagaaaacactaaagttgtgattgattatggttctgtcccaattttcatcagacttctaagttcaccaagtgatgatgtccgtgaacaggcagtttgggctttgggaaatattgctggtgactcacccaagtatcgtgaccttgtgcttggccatggagctttagcggcattgctggcacaatttaatgagcaggcaaagctatctatgttgagaaatgctacctggacattgtcaaacttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0098A22-k2LuV/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06SLm0098A22.1" temp_strand="+" temp_description="C06SLm0098A22.1  AC219226.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0098A22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12716" stop="16609"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13012" g_stop="13267" g_length="256"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="256" r_length="256" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13268" i_stop="15342" i_length="2075">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15343" g_stop="15439" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="353" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15440" i_stop="15564" i_length="125">
            <donor d_prob="0.880" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15565" g_stop="15878" g_length="314"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="666" r_length="313" r_score="0.984"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15879" i_stop="16156" i_length="278">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="16157" g_stop="16309" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="667" r_stop="819" r_length="153" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0098A22.1" gen_strand="+" ref_id="SGN-U336426" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>820</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0098A22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U336426" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13012" e_stop="13267"/>
          <exon e_start="15343" e_stop="15439"/>
          <exon e_start="15565" e_stop="15878"/>
          <exon e_start="16157" e_stop="16309"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCGATTATCGAGTTGAGTTCAGAATTTCGATTCACCGGAGCTATGTCACTGAGGCCGAACTCGAGAACGGAGGCTCGCCGGAGCAGGTACAAAGTTGCCGTCGATGCGGAGGAAGGACGGAGAAGAAGGGAAGATAACATGGTTGAGATCCGGAAGAATAAAAGAGAAGAGAATTTGCTTAAGAAGCGTCGTGAAGGTTTACTACAAGCTCAGCAGTTTCCTAGCACTGCTGCTGTTTCTCACCTTGATAAGAAGGTATAGATTTTTTTCGTTGATTAACTTTTAGTTTCTTAGATACATATATTTTGATCGAATTTGATTGTCTGATTTGAATTTTCAAGTGCGATCAATGTTTACTCAGTGTGTGTCCTTGTGAGCTTAATTCGTTACTTCGATTTTTTCGTTTAGTTACTTGCTTCATTCAGTTCTAAACCTCAATTATGCTTAATTGATTCAATTATTTGTTTGAAGTTCAAGTGTGATCACTGTTTACTCGGTTTTCTCTTTTACGAGCTTAGTTCAGTACTTCGTATTTTTTGTTATTTAAATGCTTAATTTAGTTCTTAGATTCACTTATGCTTATTGAAATCAATTATTTGATTGAAATGCAAGTGCGTCAATGTTTACTCTCGGTGTTCGTCCTATCTAAGATAATCGGCTACTTGTATTTTTCGTTATTTAAATGCTTCATTCAGTTCTTACCTTTGCTTATCCTCATTGGATTCAATTGTTTTATCAAGACTAATTCATCTTTAGTTGCAAAGTGCAGCGCCAATTAATACCAAAAAATTAAAATATTTAGTTGCATATATATATATATATATATTATATATATATATATATAAAATCAAAATCTCAATAGAAGTAGCTTTGAAGATGAAGGAGGAGGAGGAGGAAAACGAAACCAAGGAAGAAGGAAAGAAGAAATACGTTGTGGTTGGACTTTGGAGTCGCCGGAAAAGTCTGACTGGTCATTGCCTCACTAGAGAAGTCTAGTCGAGTCGATGGGTTGGAGTCAAGTTGTAGTTTACGAATGCAACTGTGCAAATTTGGAAAGAAAACCCTAAAATTTAACTTTTAAAACACTACATTTTTTTTTTGAAATAGGTAACTTTCTTTTAAAACCTTAAATTGATTGTTTTTTTTTACGAAAATACAAAAAGTGACTCCTTGGTCGCCATGGCGTTGCCTTTTGAAGATCGCCTCGCCACAAAGATAATAGGCGCTGAAGGATCGCCTTGCCTTGCCTCTTGCCATTGATGATGAGACGATTACCTTCCACGACATTGTCTCAGCCGTATGATACCGATAGTGTCATAGGAATCAGTTATTTTATTTGCATGGCAAGTTCTATCAATTTTACATGGTGTCATCATTTCCAGCTTAATTTGCTACGCGTATTAATTACTTGCTCTATTCAGTTCTTAGCCTCACTAGTCCTTATTGAATTCAATTGTTTATTTTAATTGCAAGTGCGATCAAGACTAATTCATCTTTTCTCTTTGAGCTTACTCAGCAGCGTGAATTTTTGTTAACTACTCTCAGTCTTATGATGCAGATATTGTGATCGGTTTCAGTTGCTTTAGTTGAATTGCAAGTGCTATCAATTTTTACTTTCCAGCATAATTTGCTACTTGTTTTTACCTACTTTCTCCATTCAGTTCTTAGCCTCACTAATCCTTATTGGATTCAATTGTGTATTTGAATTGCAACTGCGATCAGGACTAGTTGGTATTGATCATTTCTAGCATTTATTTTCATTAATTACTTGCTTCATTCTGTTCTTAGGCTGAATTATCCAATTCTATTTGCATTCAGTTTCTATTTGAATGGCTAGCGCGATCAATGTTTACTCAGTGTGCATTCTTTCTTCATTCAGTTCTAAGCCTCATTTTTCCTTGATGGATACAATCTTTTATTTGAATTGCTAGTGCAATCAATGGTTACTTGGTATTCATCCTTTCAAGCATAATTGGGTACTATTATTTTTTGGTAATTACCTGCTTCACTCAGTTCTTAAGGATAACTTTTTTTACTTGTTAGAGAAGCATAATGTTTTCAATAGTTAGGTATACAGTCTGCTTTGTTTCTCCCTTGTCCGCAAAGCAAAAATGACATAATCACTATTTGAAGAGTCAAAAAGGTATTTGAAAAATACTATTTAAGAAAAAGGAAGAAATCTATACACTGAAAGATTAGATTAGTTGATTTCTACTTCAAATATAATCATCCTTGCAGCTATGGAGGAGTAGCATTGCGCCAAAAATAATATCATGCTGCTCTAGCAACAAACTTATCTGATTCAATTTTATTGGTTTATAACCTTTCAGCTGGAGACTCTTCCTGAATTGATTGCTGGGGTTTGGTCTGATGACAGCAGTTTGCAACTTGAATGTACAACACAATTCCGGAAACTGCTTTCAATTGGTCAGTGTTGCTTTGCTTTTTTCCTAAATGTATTTCTGTTTGATCACCTTGACAATGAATGTTTTTCCTCTCTGTATCTTTGTGTCTTAATTAGTATGCGTGTTCACTTCTGGTTGTTTTGGCAGAACGCAATCCTCCTATAGAGGAAGTGATACAGTCTGGGGTAGTTCCTCGCTTTGTTGAATTTCTTGCTCGAGATGACTATCCTCAACTGCAGGTTTTTTTACAAAATCTATTATTTTTGTTTTTTGTTTTGCAGTTCCATCTTTATTTCTAATGTTTACATAATTGGCATTCTATAATCTAGTTTGAGGCAGCGTGGGCTCTTACAAATATTGCATCTGGTACATCAGAAAACACTAAAGTTGTGATTGATTATGGTTCTGTCCCAATTTTCATCAGACTTCTAAGTTCACCAAGTGATGATGTCCGTGAACAGGTAAAACTTTATATATAAGAGGGCTAAGCTTTCATGTTTCTTCTCATAATTGTCATGATATTATGTCTATTTTTCTTAAAAAAATTGGGGTTACGGGAAGGAGTAATGGGGGAGAGAATTACAAAGTGGAAATCAAACCCTCACTGGCAAGATGAAAGTTCAAGTATTCAACCAACTTAGCTACTAAGATTCTCCTGATATTGTATGTATTATGCCAATTTATTTCTGAGAAGTTAAAAATTCTTTTATTTTGATATTTTTTTTAAAAAAATTTATAGGCCGTTTGGGCTTTGGGAAATATTGCTGGTGACTCGCCCAAGTATCGTGACCTTGTGCTTGGCCATGGAGCTTTAGTGGCATTGCTGGCACAATTTAATGAGCAGGCAAAGCTATCTATGTTGAGAAATGCTACCTGGACATTGTCAAACTTT</genome_strand>
        <mrna_strand>CGTTATTATCGAGTTGAGTTCAGAATTTCGATTCACCGGAGCTATGTCACTGAGGCCGAACTCGAGAACGGAGGCTCGCCGGAGCAGGTACAAAGTTGCCGTAGATGCGGAGGAAGGACGGAGAAGAAGGGAAGATAACATGGTTGAGATCCGGAAGAATAAAAGAGAAGAGAATTTGCTTAAGAAGCGTCGTGAAGGTTTACTACAAGCTCAGCAGTTTCCTAGCACTGCTGCTGTTTCTCACCTTGATAAGAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGAGACTCTTCCTGAATTGATTGCTGGGGTTTGGTCTGATGACAGCAGTTTGCAACTTGAATGTACAACACAATTCCGGAAACTGCTTTCAATTG.............................................................................................................................AACGCAATCCTCCTATAGAGGAAGTGATACAGTCTGGGGTAGTTCCTCGCTTTGTTGAATTTCTTGCTCGAGATGACTATCATCAACTGCAGGTTTTTTTACAAAATCTATTATTTTTGTTTTTTGTTTTGCAGTT-CATCTTTATTTCTAATGTTCACATAATTGGCATCCTATAATCTAGTTTGAGGCAGCGTGGGCTCTTACAAATATTGCGTCTGGTACATCAGAAAACACTAAAGTTGTGATTGATTATGGTTCTGTCCCAATTTTCATCAGACTTCTAAGTTCACCAAGTGATGATGTCCGTGAACAG......................................................................................................................................................................................................................................................................................GCAGTTTGGGCTTTGGGAAATATTGCTGGTGACTCACCCAAGTATCGTGACCTTGTGCTTGGCCATGGAGCTTTAGCGGCATTGCTGGCACAATTTAATGAGCAGGCAAAGCTATCTATGTTGAGAAATGCTACCTGGACATTGTCAAACTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0098A22-k2LuV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U346994" ref_strand="+" ref_description="SGN-U346994        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein, putative mitochondrial carrier protein At2g47490 - Arabidopsis thaliana, EMBL:AC002535 | chr3:23179445-23180163 FORWARD | Aliases: F26K9.80(evalue: 3e-18, score=87.8) genbank/nr: gi|15228820|ref|NP_191824.1| expressed protein [Arabidopsis thaliana] gi|11357682|pir||T48054 hypothetical protein F26K9.80 - Arabidopsis thaliana gi|7362745|emb|CAB83115.1| putative protein [Arabidopsis thaliana] gi|15450964|gb|AAK96753.1| putative protein [Arabidopsis thaliana] gi|17978723|gb|AAL47355.1| putative protein [Arabidopsis thaliana](evalue: 2e-16, score=87.8)">
      <seq>tcaacacgaagcttgtgcagtggattaaaatgttactggaagaggaggaggagaagaggagggtatgagaggctaaatgggtcgggttgtatgaggatgaatcgggtcggtttggggaaacgaaggttctggaagataaatctaaagcggagagtgaagttgagtcggaattatttgaaattttggccgaagaaattcgtaatgaatgtgcgggatgcgtatgtgaatatgatgatgaagattgctaattccaagtgtatgagtagtggggttggtggtggattcggtacgaggcagttgaaagagtatgatgagaaggtgctcgtacagatttacaagtccatgattattgcgcagggacagttaattggtgatggtgatgtaaaatttggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0098A22-k2LuV/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06SLm0098A22.1" temp_strand="+" temp_description="C06SLm0098A22.1  AC219226.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0098A22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="80977" stop="81969"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81277" g_stop="81669" g_length="393"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="393" r_length="393" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0098A22.1" gen_strand="+" ref_id="SGN-U346994" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>393</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0098A22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U346994" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81277" e_stop="81669"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAACACGAAGCTTGTGCAGTGGATTAAAATGTTACTGGAAGAGGAGGAGGAGAAGAGGAGGGTATGAGAGGCTAAATGGGTCGGGTTGTATGAGGATGAATCGGGTCGGTTTGGGGAAACGAAGGTTCTGGAAGATAAATCTAAAGCGGAGAGTGAAGTTGAGTCGGAATTATTTGAAATTTTGGCCGAAGAAATTCGTAATGAATGTGCGGGATGCGTATGTGAATATGATGATGAAGATTGCTAATTCCAAGTGTATGAGTAGTGGGGTTGGTGGTGGATTCGGTACGAGGCAGTTGAAAGAGTATGATGAGAAGGTGCTCGTACAGATTTACAAGTCCATGATTATTGCGCAGGGACAGTTAATTGGTGATGGTGATGTAAAATTTGGC</genome_strand>
        <mrna_strand>TCAACACGAAGCTTGTGCAGTGGATTAAAATGTTACTGGAAGAGGAGGAGGAGAAGAGGAGGGTATGAGAGGCTAAATGGGTCGGGTTGTATGAGGATGAATCGGGTCGGTTTGGGGAAACGAAGGTTCTGGAAGATAAATCTAAAGCGGAGAGTGAAGTTGAGTCGGAATTATTTGAAATTTTGGCCGAAGAAATTCGTAATGAATGTGCGGGATGCGTATGTGAATATGATGATGAAGATTGCTAATTCCAAGTGTATGAGTAGTGGGGTTGGTGGTGGATTCGGTACGAGGCAGTTGAAAGAGTATGATGAGAAGGTGCTCGTACAGATTTACAAGTCCATGATTATTGCGCAGGGACAGTTAATTGGTGATGGTGATGTAAAATTTGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0098A22-k2LuV/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U341204" ref_strand="+" ref_description="SGN-U341204        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | kinesin motor protein-related | chr2:19500065-19505226 FORWARD | Aliases: T30B22.20(evalue: 6e-34, score=140) genbank/nr: Calponin-like(evalue: 4e-37, score=157)">
      <seq>aggactcagcagtttcctgtgggaacaagttcgttcagaaacattcttcagccagcacaaaggctgaccaaagaactgtaacactgatgaaagaagagaatcgcatcgtcagtgaggaacttcaaagaaggtacatgatgcagaacacatttgttgaccaacagcaacaagacatcaaggacctgaagcaaactcttttgactacaaaagcgggtatgcagttcatgcaaatgaagtttcatgaggaaatgcaaaatattggcatccacatacatggcctagcacacgcagcttctggttatcatagagttcttgaagaaaatcgcaggctttacaatcaagtgcaagaccttaaaggaagcataagggtttattgtcgagtaagaccctttttgcctgggcaatcaagttatatcagtaatgtcgatcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0098A22-k2LuV/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06SLm0098A22.1" temp_strand="+" temp_description="C06SLm0098A22.1  AC219226.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0098A22 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="93306" stop="94738"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93606" g_stop="93667" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93668" i_stop="93782" i_length="115">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93783" g_stop="93899" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="179" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="93900" i_stop="93990" i_length="91">
            <donor d_prob="0.810" d_score="1.00"/>
            <acceptor a_prob="0.643" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93991" g_stop="94072" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="261" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="94073" i_stop="94178" i_length="106">
            <donor d_prob="0.287" d_score="1.00"/>
            <acceptor a_prob="0.919" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="94179" g_stop="94274" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="357" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="94275" i_stop="94364" i_length="90">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="94365" g_stop="94438" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="431" r_length="74" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0098A22.1" gen_strand="+" ref_id="SGN-U341204" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>431</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0098A22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U341204" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93606" e_stop="93667"/>
          <exon e_start="93783" e_stop="93899"/>
          <exon e_start="93991" e_stop="94072"/>
          <exon e_start="94179" e_stop="94274"/>
          <exon e_start="94365" e_stop="94438"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGACTCAGCAGTTTCCTGTGGGAACAAGTTCGTTCAGAAACATTCTTCAGCCAGCACAAAGGTAATGCCTCTCAGTTTTGCAAATCACTAGGTAATCAATCATAAAGGTATTTTTTTAATATAGAATAGAGGATGACTCATACTTGCACATTACTTTTTTTCTCTTTCTCAATTAGGCTGACCAAAGAACTGTAACACTGATGAAAGAAGAGAATCGCATCGTCAGTGAGGAACTTCAAAGAAGGTACATGATGCAGAACACATTTGTTGACCAACAGCAACAAGACATCAAGGTAAGAATCGAAACCAGGCATGATCGGACTCCCAAACATGAAACTTGTGGATTTTCCACCTATATTTACGAACAATGATGCTCCACTGCAGGACCTGAAGCAAACTCTTTTGACTACAAAAGCGGGTATGCAGTTCATGCAAATGAAGTTTCATGAGGAAATGCAAAATATTGGTAGGGTCAATGCACTTGACAAATGTTCCCCTTTTTTCCCTTTCTTTTCTATGGTTGATTTCTTGAGCTGAGTTTGCTTCCATCTTGTAATATCCCTGCATTATAGGCATCCACATACATGGCCTAGCACACGCAGCTTCTGGTTATCATAGAGTTCTTGAAGAAAATCGCAGGCTTTACAATCAAGTGCAAGACCTTAAAGGTATCTTATTATAACATCCCACTTTGTCCATCTTCATTCTCTCATACATGTTTTGAAATGAAAAGGTTGTTTCTTTGTGCTCCAATTCAGGAAGCATAAGGGTTTATTGTCGAGTAAGACCCTTTTTGCCTGGGCAATCAAGTTATATCAGTAATGTCGATCAT</genome_strand>
        <mrna_strand>AGGACTCAGCAGTTTCCTGTGGGAACAAGTTCGTTCAGAAACATTCTTCAGCCAGCACAAAG...................................................................................................................GCTGACCAAAGAACTGTAACACTGATGAAAGAAGAGAATCGCATCGTCAGTGAGGAACTTCAAAGAAGGTACATGATGCAGAACACATTTGTTGACCAACAGCAACAAGACATCAAG...........................................................................................GACCTGAAGCAAACTCTTTTGACTACAAAAGCGGGTATGCAGTTCATGCAAATGAAGTTTCATGAGGAAATGCAAAATATTG..........................................................................................................GCATCCACATACATGGCCTAGCACACGCAGCTTCTGGTTATCATAGAGTTCTTGAAGAAAATCGCAGGCTTTACAATCAAGTGCAAGACCTTAAAG..........................................................................................GAAGCATAAGGGTTTATTGTCGAGTAAGACCCTTTTTGCCTGGGCAATCAAGTTATATCAGTAATGTCGATCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>4</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="12880" PGL_stop="18996"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="12880" e_stop="13267"/>
            <exon e_start="15343" e_stop="15439"/>
            <exon e_start="15565" e_stop="15656"/>
            <exon e_start="15747" e_stop="15878"/>
            <exon e_start="16157" e_stop="16342"/>
            <exon e_start="16430" e_stop="16593"/>
            <exon e_start="16690" e_stop="16768"/>
            <exon e_start="17621" e_stop="17749"/>
            <exon e_start="17885" e_stop="18012"/>
            <exon e_start="18093" e_stop="18460"/>
            <exon e_start="18698" e_stop="18996"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.971" e_score="0.992"/>
          <exon-intron don_prob="0.880" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.967" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.958" e_score="1.000"/>
          <exon-intron don_prob="0.914" acc_prob="0.500" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.941" e_score="1.000"/>
          <exon-intron don_prob="0.969" acc_prob="0.976" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.763" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.998" e_score="0.992"/>
          <exon-only e_score="0.863"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="12880" e_stop="13267" e_length="388"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.971">
            <gDNA_intron_boundary i_start="13268" i_stop="15342" i_length="2075"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="15343" e_stop="15439" e_length="97"/>
          </exon>
          <intron i_serial="2" don_prob="0.880" acc_prob="0.998">
            <gDNA_intron_boundary i_start="15440" i_stop="15564" i_length="125"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="15565" e_stop="15656" e_length="92"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.967">
            <gDNA_intron_boundary i_start="15657" i_stop="15746" i_length="90"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="15747" e_stop="15878" e_length="132"/>
          </exon>
          <intron i_serial="4" don_prob="0.995" acc_prob="0.999">
            <gDNA_intron_boundary i_start="15879" i_stop="16156" i_length="278"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="16157" e_stop="16342" e_length="186"/>
          </exon>
          <intron i_serial="5" don_prob="0.996" acc_prob="0.958">
            <gDNA_intron_boundary i_start="16343" i_stop="16429" i_length="87"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="16430" e_stop="16593" e_length="164"/>
          </exon>
          <intron i_serial="6" don_prob="0.914" acc_prob="0.500">
            <gDNA_intron_boundary i_start="16594" i_stop="16689" i_length="96"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="16690" e_stop="16768" e_length="79"/>
          </exon>
          <intron i_serial="7" don_prob="1.000" acc_prob="0.941">
            <gDNA_intron_boundary i_start="16769" i_stop="17620" i_length="852"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="17621" e_stop="17749" e_length="129"/>
          </exon>
          <intron i_serial="8" don_prob="0.969" acc_prob="0.976">
            <gDNA_intron_boundary i_start="17750" i_stop="17884" i_length="135"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="17885" e_stop="18012" e_length="128"/>
          </exon>
          <intron i_serial="9" don_prob="0.994" acc_prob="0.763">
            <gDNA_intron_boundary i_start="18013" i_stop="18092" i_length="80"/>
          </intron>
          <exon e_serial="10" e_score="0.992">
            <gDNA_exon_boundary e_start="18093" e_stop="18460" e_length="368"/>
          </exon>
          <intron i_serial="10" don_prob="0.998" acc_prob="0.998">
            <gDNA_intron_boundary i_start="18461" i_stop="18697" i_length="237"/>
          </intron>
          <exon e_serial="11" e_score="0.863">
            <gDNA_exon_boundary e_start="18698" e_stop="18996" e_length="299"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12880" stop="13267"/>
              <exon start="15343" stop="15439"/>
              <exon start="15565" stop="15656"/>
              <exon start="15747" stop="15878"/>
              <exon start="16157" stop="16342"/>
              <exon start="16430" stop="16593"/>
              <exon start="16690" stop="16768"/>
              <exon start="17621" stop="17749"/>
              <exon start="17885" stop="18012"/>
              <exon start="18093" stop="18460"/>
              <exon start="18698" stop="18996"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U318193" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTTTTAGAAACAATCCAAATTTTCCCCAAACCCTGATTCCACTCTCAATTGTCTTCTTCCTCATTTTCCTATTTAACAAAACTCAATTTCGCATTTCGAATTCCTCAAACTGAATTTTGTTCATAGAGATTATCGATTATCGAGTTGAGTTCAGAATTTCGATTCACCGGAGCTATGTCACTGAGGCCGAACTCGAGAACGGAGGCTCGCCGGAGCAGGTACAAAGTTGCCGTCGATGCGGAGGAAGGACGGAGAAGAAGGGAAGATAACATGGTTGAGATCCGGAAGAATAAAAGAGAAGAGAATTTGCTTAAGAAGCGTCGTGAAGGTTTACTACAAGCTCAGCAGTTTCCTAGCACTGCTGCTGTTTCTCACCTTGATAAGAAG : CTGGAGACTCTTCCTGAATTGATTGCTGGGGTTTGGTCTGATGACAGCAGTTTGCAACTTGAATGTACAACACAATTCCGGAAACTGCTTTCAATTG : AACGCAATCCTCCTATAGAGGAAGTGATACAGTCTGGGGTAGTTCCTCGCTTTGTTGAATTTCTTGCTCGAGATGACTATCCTCAACTGCAG : TTTGAGGCAGCGTGGGCTCTTACAAATATTGCATCTGGTACATCAGAAAACACTAAAGTTGTGATTGATTATGGTTCTGTCCCAATTTTCATCAGACTTCTAAGTTCACCAAGTGATGATGTCCGTGAACAG : GCCGTTTGGGCTTTGGGAAATATTGCTGGTGACTCGCCCAAGTATCGTGACCTTGTGCTTGGCCATGGAGCTTTAGTGGCATTGCTGGCACAATTTAATGAGCAGGCAAAGCTATCTATGTTGAGAAATGCTACCTGGACATTGTCAAACTTTTGTAGGGGAAAACCTCAGCCACTGTTCGAGCAG : ACAAAAGCGGCACTCCCCACTCTTGGTCGCCTTATCCACTCAAATGATGAAGAAGTCTTGACAGATGCATGCTGGGCTCTTTCATATCTTTCTGATGGAACTAATGACAAAATCCAGGCTGTTATTGAAGCTGGAGTGTGTTCCCGCCTTGTTGAGCTGCTACT : TCATTCTTCACCATCTGTTCTCATTCCTGCCTTGCGCACTGTTGGTAACATAGTCACAGGAGACGATATCCAAACTCAG : GTTATGATTGACCATCATGCTCTTCCCTGCCTTGTTAACCTGTTGACGCAAAATTACAAAAAAAGCATTAAAAAGGAAGCTTGTTGGACAATCTCGAACATTACAGCTGGTAATAGAAATCAAATTCAG : ATTGTGATCGAGGCTGGCATTATTGCCCCTCTTGTATATCTGCTACAAAATGCTGAATTTGAGATAAAGAAAGAGGCTGCTTGGGCAATTTCAAATGCTACGTCCGGTGGAAATCATGATCAAATCAA : GTTCTTGGTGAGCCAAGGTTGTATAAAACCATTGTGTGATCTTCTGGTATGTCCTGACCCAAGAATTGTCACTGTCTGCTTGGAAGGGCTTGAGAATATTCTGAAGATTGGGGAAGCTGATAAGGATCTAGGAAACACAGAAGGCGTGAATGTTTATGCCCAGTTAATCGACGAGGCTGAAGGTCTAGAAAAGATTGAAAACCTCCAAAGCCATGACAACACTGAAATCTATGAGAAAGCAGTGAAGATCCTCGAAACTTATTGGTTGGAGGAGGAAGATGTGCCGGTTTCATTAAATGAAGATCAATTCGAATTTGGAGGGGCCGATATATCTCTTCCATCGGGAGGATTTAACTTCAGTTGATGGG : GTTTGGCTAGCAGGTCAGTGAGTGGTTTTAAATTGGAGAAACATCCTCTTTAAACTATGTGTAGAGAGAGTTGTCATCTACTTGGGGGAGGTTTGGATTTTACATATATTTTCTTCTATTTATTGATGGAGTTGGTGTTGTATAAGTTACTTTTTCCCCTAGACTAGACATATTGGTGGTGGTGGATATATATATGTATACATGTTAATGTACAAGTCATACGTGGGCTCTCCATGACATTATTTGGTGTAAACATATACTTGTTTCCATCTTTTTGTACCCTTATATGGCTTGTTTCC</gDNA_template>
            <first_frame> L  F  R  N  N  P  N  F  P  Q  T  L  I  P  L  S  I  V  F  F  L  I  F  L  F  N  K  T  Q  F  R  I  S  N  S  S  N  *  I  L  F  I  E  I  I  D  Y  R  V  E  F  R  I  S  I  H  R  S  Y  V  T  E  A  E  L  E  N  G  G  S  P  E  Q  V  Q  S  C  R  R  C  G  G  R  T  E  K  K  G  R  *  H  G  *  D  P  E  E  *  K  R  R  E  F  A  *  E  A  S  *  R  F  T  T  S  S  A  V  S  *  H  C  C  C  F  S  P  *  *  E   : A  G  D  S  S  *  I  D  C  W  G  L  V  *  *  Q  Q  F  A  T  *  M  Y  N  T  I  P  E  T  A  F  N  * :   T  Q  S  S  Y  R  G  S  D  T  V  W  G  S  S  S  L  C  *  I  S  C  S  R  *  L  S  S  T  A   : V  *  G  S  V  G  S  Y  K  Y  C  I  W  Y  I  R  K  H  *  S  C  D  *  L  W  F  C  P  N  F  H  Q  T  S  K  F  T  K  *  *  C  P  *  T   : G  R  L  G  F  G  K  Y  C  W  *  L  A  Q  V  S  *  P  C  A  W  P  W  S  F  S  G  I  A  G  T  I  *  *  A  G  K  A  I  Y  V  E  K  C  Y  L  D  I  V  K  L  L  *  G  K  T  S  A  T  V  R  A   : D  K  S  G  T  P  H  S  W  S  P  Y  P  L  K  *  *  R  S  L  D  R  C  M  L  G  S  F  I  S  F  *  W  N  *  *  Q  N  P  G  C  Y  *  S  W  S  V  F  P  P  C  *  A  A  T  :  S  F  F  T  I  C  S  H  S  C  L  A  H  C  W  *  H  S  H  R  R  R  Y  P  N  S   : G  Y  D  *  P  S  C  S  S  L  P  C  *  P  V  D  A  K  L  Q  K  K  H  *  K  G  S  L  L  D  N  L  E  H  Y  S  W  *  *  K  S  N  S   : D  C  D  R  G  W  H  Y  C  P  S  C  I  S  A  T  K  C  *  I  *  D  K  E  R  G  C  L  G  N  F  K  C  Y  V  R  W  K  S  *  S  N  Q  :  V  L  G  E  P  R  L  Y  K  T  I  V  *  S  S  G  M  S  *  P  K  N  C  H  C  L  L  G  R  A  *  E  Y  S  E  D  W  G  S  *  *  G  S  R  K  H  R  R  R  E  C  L  C  P  V  N  R  R  G  *  R  S  R  K  D  *  K  P  P  K  P  *  Q  H  *  N  L  *  E  S  S  E  D  P  R  N  L  L  V  G  G  G  R  C  A  G  F  I  K  *  R  S  I  R  I  W  R  G  R  Y  I  S  S  I  G  R  I  *  L  Q  L  M  G :   F  G  *  Q  V  S  E  W  F  *  I  G  E  T  S  S  L  N  Y  V  *  R  E  L  S  S  T  W  G  R  F  G  F  Y  I  Y  F  L  L  F  I  D  G  V  G  V  V  *  V  T  F  S  P  R  L  D  I  L  V  V  V  D  I  Y  M  Y  T  C  *  C  T  S  H  T  W  A  L  H  D  I  I  W  C  K  H  I  L  V  S  I  F  L  Y  P  Y  M  A  C  F  </first_frame>
            <second_frame>  F  L  E  T  I  Q  I  F  P  K  P  *  F  H  S  Q  L  S  S  S  S  F  S  Y  L  T  K  L  N  F  A  F  R  I  P  Q  T  E  F  C  S  *  R  L  S  I  I  E  L  S  S  E  F  R  F  T  G  A  M  S  L  R  P  N  S  R  T  E  A  R  R  S  R  Y  K  V  A  V  D  A  E  E  G  R  R  R  R  E  D  N  M  V  E  I  R  K  N  K  R  E  E  N  L  L  K  K  R  R  E  G  L  L  Q  A  Q  Q  F  P  S  T  A  A  V  S  H  L  D  K  K  :  L  E  T  L  P  E  L  I  A  G  V  W  S  D  D  S  S  L  Q  L  E  C  T  T  Q  F  R  K  L  L  S  I   : E  R  N  P  P  I  E  E  V  I  Q  S  G  V  V  P  R  F  V  E  F  L  A  R  D  D  Y  P  Q  L  Q  :  F  E  A  A  W  A  L  T  N  I  A  S  G  T  S  E  N  T  K  V  V  I  D  Y  G  S  V  P  I  F  I  R  L  L  S  S  P  S  D  D  V  R  E  Q  :  A  V  W  A  L  G  N  I  A  G  D  S  P  K  Y  R  D  L  V  L  G  H  G  A  L  V  A  L  L  A  Q  F  N  E  Q  A  K  L  S  M  L  R  N  A  T  W  T  L  S  N  F  C  R  G  K  P  Q  P  L  F  E  Q  :  T  K  A  A  L  P  T  L  G  R  L  I  H  S  N  D  E  E  V  L  T  D  A  C  W  A  L  S  Y  L  S  D  G  T  N  D  K  I  Q  A  V  I  E  A  G  V  C  S  R  L  V  E  L  L  L :   H  S  S  P  S  V  L  I  P  A  L  R  T  V  G  N  I  V  T  G  D  D  I  Q  T  Q  :  V  M  I  D  H  H  A  L  P  C  L  V  N  L  L  T  Q  N  Y  K  K  S  I  K  K  E  A  C  W  T  I  S  N  I  T  A  G  N  R  N  Q  I  Q  :  I  V  I  E  A  G  I  I  A  P  L  V  Y  L  L  Q  N  A  E  F  E  I  K  K  E  A  A  W  A  I  S  N  A  T  S  G  G  N  H  D  Q  I  K :   F  L  V  S  Q  G  C  I  K  P  L  C  D  L  L  V  C  P  D  P  R  I  V  T  V  C  L  E  G  L  E  N  I  L  K  I  G  E  A  D  K  D  L  G  N  T  E  G  V  N  V  Y  A  Q  L  I  D  E  A  E  G  L  E  K  I  E  N  L  Q  S  H  D  N  T  E  I  Y  E  K  A  V  K  I  L  E  T  Y  W  L  E  E  E  D  V  P  V  S  L  N  E  D  Q  F  E  F  G  G  A  D  I  S  L  P  S  G  G  F  N  F  S  *  W   : G  L  A  S  R  S  V  S  G  F  K  L  E  K  H  P  L  *  T  M  C  R  E  S  C  H  L  L  G  G  G  L  D  F  T  Y  I  F  F  Y  L  L  M  E  L  V  L  Y  K  L  L  F  P  L  D  *  T  Y  W  W  W  W  I  Y  I  C  I  H  V  N  V  Q  V  I  R  G  L  S  M  T  L  F  G  V  N  I  Y  L  F  P  S  F  C  T  L  I  W  L  V  S </second_frame>
            <third_frame>   F  *  K  Q  S  K  F  S  P  N  P  D  S  T  L  N  C  L  L  P  H  F  P  I  *  Q  N  S  I  S  H  F  E  F  L  K  L  N  F  V  H  R  D  Y  R  L  S  S  *  V  Q  N  F  D  S  P  E  L  C  H  *  G  R  T  R  E  R  R  L  A  G  A  G  T  K  L  P  S  M  R  R  K  D  G  E  E  G  K  I  T  W  L  R  S  G  R  I  K  E  K  R  I  C  L  R  S  V  V  K  V  Y  Y  K  L  S  S  F  L  A  L  L  L  F  L  T  L  I  R  S :   W  R  L  F  L  N  *  L  L  G  F  G  L  M  T  A  V  C  N  L  N  V  Q  H  N  S  G  N  C  F  Q  L  :  N  A  I  L  L  *  R  K  *  Y  S  L  G  *  F  L  A  L  L  N  F  L  L  E  M  T  I  L  N  C  S :   L  R  Q  R  G  L  L  Q  I  L  H  L  V  H  Q  K  T  L  K  L  *  L  I  M  V  L  S  Q  F  S  S  D  F  *  V  H  Q  V  M  M  S  V  N  R :   P  F  G  L  W  E  I  L  L  V  T  R  P  S  I  V  T  L  C  L  A  M  E  L  *  W  H  C  W  H  N  L  M  S  R  Q  S  Y  L  C  *  E  M  L  P  G  H  C  Q  T  F  V  G  E  N  L  S  H  C  S  S  R :   Q  K  R  H  S  P  L  L  V  A  L  S  T  Q  M  M  K  K  S  *  Q  M  H  A  G  L  F  H  I  F  L  M  E  L  M  T  K  S  R  L  L  L  K  L  E  C  V  P  A  L  L  S  C  Y   : F  I  L  H  H  L  F  S  F  L  P  C  A  L  L  V  T  *  S  Q  E  T  I  S  K  L  R :   L  *  L  T  I  M  L  F  P  A  L  L  T  C  *  R  K  I  T  K  K  A  L  K  R  K  L  V  G  Q  S  R  T  L  Q  L  V  I  E  I  K  F  R :   L  *  S  R  L  A  L  L  P  L  L  Y  I  C  Y  K  M  L  N  L  R  *  R  K  R  L  L  G  Q  F  Q  M  L  R  P  V  E  I  M  I  K  S   : S  S  W  *  A  K  V  V  *  N  H  C  V  I  F  W  Y  V  L  T  Q  E  L  S  L  S  A  W  K  G  L  R  I  F  *  R  L  G  K  L  I  R  I  *  E  T  Q  K  A  *  M  F  M  P  S  *  S  T  R  L  K  V  *  K  R  L  K  T  S  K  A  M  T  T  L  K  S  M  R  K  Q  *  R  S  S  K  L  I  G  W  R  R  K  M  C  R  F  H  *  M  K  I  N  S  N  L  E  G  P  I  Y  L  F  H  R  E  D  L  T  S  V  D  G  :  V  W  L  A  G  Q  *  V  V  L  N  W  R  N  I  L  F  K  L  C  V  E  R  V  V  I  Y  L  G  E  V  W  I  L  H  I  F  S  S  I  Y  *  W  S  W  C  C  I  S  Y  F  F  P  *  T  R  H  I  G  G  G  G  Y  I  Y  V  Y  M  L  M  Y  K  S  Y  V  G  S  P  *  H  Y  L  V  *  T  Y  T  C  F  H  L  F  V  P  L  Y  G  L  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0098A22.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13007" stop="13267"/>
                    <exon start="15343" stop="15439"/>
                    <exon start="15565" stop="15656"/>
                    <exon start="15747" stop="15878"/>
                    <exon start="16157" stop="16342"/>
                    <exon start="16430" stop="16593"/>
                    <exon start="16690" stop="16768"/>
                    <exon start="17621" stop="17749"/>
                    <exon start="17885" stop="18012"/>
                    <exon start="18093" stop="18456"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1629</number_coding_nucleotides>
                  <number_encoded_amino_acids>543</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RLSIIELSSEFRFTGAMSLRPNSRTEARRSRYKVAVDAEEGRRRREDNMVEIRKNKREENLLKKRREGLLQAQQFPSTAAVSHLDKKLETLPELIAGVWSDDSSLQLECTTQFRKLLSIERNPPIEEVIQSGVVPRFVEFLARDDYPQLQFEAAWALTNIASGTSENTKVVIDYGSVPIFIRLLSSPSDDVREQAVWALGNIAGDSPKYRDLVLGHGALVALLAQFNEQAKLSMLRNATWTLSNFCRGKPQPLFEQTKAALPTLGRLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCSRLVELLLHSSPSVLIPALRTVGNIVTGDDIQTQVMIDHHALPCLVNLLTQNYKKSIKKEACWTISNITAGNRNQIQIVIEAGIIAPLVYLLQNAEFEIKKEAAWAISNATSGGNHDQIKFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKIGEADKDLGNTEGVNVYAQLIDEAEGLEKIENLQSHDNTEIYEKAVKILETYWLEEEDVPVSLNEDQFEFGGADISLPSGGFNFS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="13012" e_stop="13267"/>
            <exon e_start="15343" e_stop="15439"/>
            <exon e_start="15565" e_stop="15878"/>
            <exon e_start="16157" e_stop="16309"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.971" e_score="0.980"/>
          <exon-intron don_prob="0.880" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.999" e_score="0.984"/>
          <exon-only e_score="0.980"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.980">
            <gDNA_exon_boundary e_start="13012" e_stop="13267" e_length="256"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.971">
            <gDNA_intron_boundary i_start="13268" i_stop="15342" i_length="2075"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="15343" e_stop="15439" e_length="97"/>
          </exon>
          <intron i_serial="2" don_prob="0.880" acc_prob="0.998">
            <gDNA_intron_boundary i_start="15440" i_stop="15564" i_length="125"/>
          </intron>
          <exon e_serial="3" e_score="0.984">
            <gDNA_exon_boundary e_start="15565" e_stop="15878" e_length="314"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="0.999">
            <gDNA_intron_boundary i_start="15879" i_stop="16156" i_length="278"/>
          </intron>
          <exon e_serial="4" e_score="0.980">
            <gDNA_exon_boundary e_start="16157" e_stop="16309" e_length="153"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13012" stop="13267"/>
              <exon start="15343" stop="15439"/>
              <exon start="15565" stop="15878"/>
              <exon start="16157" stop="16309"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U336426" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATCGATTATCGAGTTGAGTTCAGAATTTCGATTCACCGGAGCTATGTCACTGAGGCCGAACTCGAGAACGGAGGCTCGCCGGAGCAGGTACAAAGTTGCCGTCGATGCGGAGGAAGGACGGAGAAGAAGGGAAGATAACATGGTTGAGATCCGGAAGAATAAAAGAGAAGAGAATTTGCTTAAGAAGCGTCGTGAAGGTTTACTACAAGCTCAGCAGTTTCCTAGCACTGCTGCTGTTTCTCACCTTGATAAGAAG : CTGGAGACTCTTCCTGAATTGATTGCTGGGGTTTGGTCTGATGACAGCAGTTTGCAACTTGAATGTACAACACAATTCCGGAAACTGCTTTCAATTG : AACGCAATCCTCCTATAGAGGAAGTGATACAGTCTGGGGTAGTTCCTCGCTTTGTTGAATTTCTTGCTCGAGATGACTATCCTCAACTGCAGGTTTTTTTACAAAATCTATTATTTTTGTTTTTTGTTTTGCAGTTCCATCTTTATTTCTAATGTTTACATAATTGGCATTCTATAATCTAGTTTGAGGCAGCGTGGGCTCTTACAAATATTGCATCTGGTACATCAGAAAACACTAAAGTTGTGATTGATTATGGTTCTGTCCCAATTTTCATCAGACTTCTAAGTTCACCAAGTGATGATGTCCGTGAACAG : GCCGTTTGGGCTTTGGGAAATATTGCTGGTGACTCGCCCAAGTATCGTGACCTTGTGCTTGGCCATGGAGCTTTAGTGGCATTGCTGGCACAATTTAATGAGCAGGCAAAGCTATCTATGTTGAGAAATGCTACCTGGACATTGTCAAACTTT</gDNA_template>
            <first_frame> I  D  Y  R  V  E  F  R  I  S  I  H  R  S  Y  V  T  E  A  E  L  E  N  G  G  S  P  E  Q  V  Q  S  C  R  R  C  G  G  R  T  E  K  K  G  R  *  H  G  *  D  P  E  E  *  K  R  R  E  F  A  *  E  A  S  *  R  F  T  T  S  S  A  V  S  *  H  C  C  C  F  S  P  *  *  E   : A  G  D  S  S  *  I  D  C  W  G  L  V  *  *  Q  Q  F  A  T  *  M  Y  N  T  I  P  E  T  A  F  N  * :   T  Q  S  S  Y  R  G  S  D  T  V  W  G  S  S  S  L  C  *  I  S  C  S  R  *  L  S  S  T  A  G  F  F  T  K  S  I  I  F  V  F  C  F  A  V  P  S  L  F  L  M  F  T  *  L  A  F  Y  N  L  V  *  G  S  V  G  S  Y  K  Y  C  I  W  Y  I  R  K  H  *  S  C  D  *  L  W  F  C  P  N  F  H  Q  T  S  K  F  T  K  *  *  C  P  *  T   : G  R  L  G  F  G  K  Y  C  W  *  L  A  Q  V  S  *  P  C  A  W  P  W  S  F  S  G  I  A  G  T  I  *  *  A  G  K  A  I  Y  V  E  K  C  Y  L  D  I  V  K  L  </first_frame>
            <second_frame>  S  I  I  E  L  S  S  E  F  R  F  T  G  A  M  S  L  R  P  N  S  R  T  E  A  R  R  S  R  Y  K  V  A  V  D  A  E  E  G  R  R  R  R  E  D  N  M  V  E  I  R  K  N  K  R  E  E  N  L  L  K  K  R  R  E  G  L  L  Q  A  Q  Q  F  P  S  T  A  A  V  S  H  L  D  K  K  :  L  E  T  L  P  E  L  I  A  G  V  W  S  D  D  S  S  L  Q  L  E  C  T  T  Q  F  R  K  L  L  S  I   : E  R  N  P  P  I  E  E  V  I  Q  S  G  V  V  P  R  F  V  E  F  L  A  R  D  D  Y  P  Q  L  Q  V  F  L  Q  N  L  L  F  L  F  F  V  L  Q  F  H  L  Y  F  *  C  L  H  N  W  H  S  I  I  *  F  E  A  A  W  A  L  T  N  I  A  S  G  T  S  E  N  T  K  V  V  I  D  Y  G  S  V  P  I  F  I  R  L  L  S  S  P  S  D  D  V  R  E  Q  :  A  V  W  A  L  G  N  I  A  G  D  S  P  K  Y  R  D  L  V  L  G  H  G  A  L  V  A  L  L  A  Q  F  N  E  Q  A  K  L  S  M  L  R  N  A  T  W  T  L  S  N  F </second_frame>
            <third_frame>   R  L  S  S  *  V  Q  N  F  D  S  P  E  L  C  H  *  G  R  T  R  E  R  R  L  A  G  A  G  T  K  L  P  S  M  R  R  K  D  G  E  E  G  K  I  T  W  L  R  S  G  R  I  K  E  K  R  I  C  L  R  S  V  V  K  V  Y  Y  K  L  S  S  F  L  A  L  L  L  F  L  T  L  I  R  S :   W  R  L  F  L  N  *  L  L  G  F  G  L  M  T  A  V  C  N  L  N  V  Q  H  N  S  G  N  C  F  Q  L  :  N  A  I  L  L  *  R  K  *  Y  S  L  G  *  F  L  A  L  L  N  F  L  L  E  M  T  I  L  N  C  R  F  F  Y  K  I  Y  Y  F  C  F  L  F  C  S  S  I  F  I  S  N  V  Y  I  I  G  I  L  *  S  S  L  R  Q  R  G  L  L  Q  I  L  H  L  V  H  Q  K  T  L  K  L  *  L  I  M  V  L  S  Q  F  S  S  D  F  *  V  H  Q  V  M  M  S  V  N  R :   P  F  G  L  W  E  I  L  L  V  T  R  P  S  I  V  T  L  C  L  A  M  E  L  *  W  H  C  W  H  N  L  M  S  R  Q  S  Y  L  C  *  E  M  L  P  G  H  C  Q  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0098A22.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13013" stop="13267"/>
                    <exon start="15343" stop="15439"/>
                    <exon start="15565" stop="15716"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>501</number_coding_nucleotides>
                  <number_encoded_amino_acids>167</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SIIELSSEFRFTGAMSLRPNSRTEARRSRYKVAVDAEEGRRRREDNMVEIRKNKREENLLKKRREGLLQAQQFPSTAAVSHLDKKLETLPELIAGVWSDDSSLQLECTTQFRKLLSIERNPPIEEVIQSGVVPRFVEFLARDDYPQLQVFLQNLLFLFFVLQFHLYF*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0098A22.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15747" stop="15878"/>
                    <exon start="16157" stop="16309"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>285</number_coding_nucleotides>
                  <number_encoded_amino_acids>95</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FEAAWALTNIASGTSENTKVVIDYGSVPIFIRLLSSPSDDVREQAVWALGNIAGDSPKYRDLVLGHGALVALLAQFNEQAKLSMLRNATWTLSNF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="81277" PGL_stop="81669"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="81277" e_stop="81669"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="81277" e_stop="81669" e_length="393"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81277" stop="81669"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U346994" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCAACACGAAGCTTGTGCAGTGGATTAAAATGTTACTGGAAGAGGAGGAGGAGAAGAGGAGGGTATGAGAGGCTAAATGGGTCGGGTTGTATGAGGATGAATCGGGTCGGTTTGGGGAAACGAAGGTTCTGGAAGATAAATCTAAAGCGGAGAGTGAAGTTGAGTCGGAATTATTTGAAATTTTGGCCGAAGAAATTCGTAATGAATGTGCGGGATGCGTATGTGAATATGATGATGAAGATTGCTAATTCCAAGTGTATGAGTAGTGGGGTTGGTGGTGGATTCGGTACGAGGCAGTTGAAAGAGTATGATGAGAAGGTGCTCGTACAGATTTACAAGTCCATGATTATTGCGCAGGGACAGTTAATTGGTGATGGTGATGTAAAATTTGGC</gDNA_template>
            <first_frame> S  T  R  S  L  C  S  G  L  K  C  Y  W  K  R  R  R  R  R  G  G  Y  E  R  L  N  G  S  G  C  M  R  M  N  R  V  G  L  G  K  R  R  F  W  K  I  N  L  K  R  R  V  K  L  S  R  N  Y  L  K  F  W  P  K  K  F  V  M  N  V  R  D  A  Y  V  N  M  M  M  K  I  A  N  S  K  C  M  S  S  G  V  G  G  G  F  G  T  R  Q  L  K  E  Y  D  E  K  V  L  V  Q  I  Y  K  S  M  I  I  A  Q  G  Q  L  I  G  D  G  D  V  K  F  G </first_frame>
            <second_frame>  Q  H  E  A  C  A  V  D  *  N  V  T  G  R  G  G  G  E  E  E  G  M  R  G  *  M  G  R  V  V  *  G  *  I  G  S  V  W  G  N  E  G  S  G  R  *  I  *  S  G  E  *  S  *  V  G  I  I  *  N  F  G  R  R  N  S  *  *  M  C  G  M  R  M  *  I  *  *  *  R  L  L  I  P  S  V  *  V  V  G  L  V  V  D  S  V  R  G  S  *  K  S  M  M  R  R  C  S  Y  R  F  T  S  P  *  L  L  R  R  D  S  *  L  V  M  V  M  *  N  L   </second_frame>
            <third_frame>   N  T  K  L  V  Q  W  I  K  M  L  L  E  E  E  E  E  K  R  R  V  *  E  A  K  W  V  G  L  Y  E  D  E  S  G  R  F  G  E  T  K  V  L  E  D  K  S  K  A  E  S  E  V  E  S  E  L  F  E  I  L  A  E  E  I  R  N  E  C  A  G  C  V  C  E  Y  D  D  E  D  C  *  F  Q  V  Y  E  *  W  G  W  W  W  I  R  Y  E  A  V  E  R  V  *  *  E  G  A  R  T  D  L  Q  V  H  D  Y  C  A  G  T  V  N  W  *  W  *  C  K  I  W  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0098A22.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="81277" stop="81669"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>393</number_coding_nucleotides>
                  <number_encoded_amino_acids>131</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>STRSLCSGLKCYWKRRRRRGGYERLNGSGCMRMNRVGLGKRRFWKINLKRRVKLSRNYLKFWPKKFVMNVRDAYVNMMMKIANSKCMSSGVGGGFGTRQLKEYDEKVLVQIYKSMIIAQGQLIGDGDVKFG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="93606" PGL_stop="94438"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="93606" e_stop="93667"/>
            <exon e_start="93783" e_stop="93899"/>
            <exon e_start="93991" e_stop="94072"/>
            <exon e_start="94179" e_stop="94274"/>
            <exon e_start="94365" e_stop="94438"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.987" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.810" acc_prob="0.643" e_score="1.000"/>
          <exon-intron don_prob="0.287" acc_prob="0.919" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.973" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="93606" e_stop="93667" e_length="62"/>
          </exon>
          <intron i_serial="1" don_prob="0.987" acc_prob="0.996">
            <gDNA_intron_boundary i_start="93668" i_stop="93782" i_length="115"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="93783" e_stop="93899" e_length="117"/>
          </exon>
          <intron i_serial="2" don_prob="0.810" acc_prob="0.643">
            <gDNA_intron_boundary i_start="93900" i_stop="93990" i_length="91"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="93991" e_stop="94072" e_length="82"/>
          </exon>
          <intron i_serial="3" don_prob="0.287" acc_prob="0.919">
            <gDNA_intron_boundary i_start="94073" i_stop="94178" i_length="106"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="94179" e_stop="94274" e_length="96"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.973">
            <gDNA_intron_boundary i_start="94275" i_stop="94364" i_length="90"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="94365" e_stop="94438" e_length="74"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93606" stop="93667"/>
              <exon start="93783" stop="93899"/>
              <exon start="93991" stop="94072"/>
              <exon start="94179" stop="94274"/>
              <exon start="94365" stop="94438"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U341204" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGGACTCAGCAGTTTCCTGTGGGAACAAGTTCGTTCAGAAACATTCTTCAGCCAGCACAAAG : GCTGACCAAAGAACTGTAACACTGATGAAAGAAGAGAATCGCATCGTCAGTGAGGAACTTCAAAGAAGGTACATGATGCAGAACACATTTGTTGACCAACAGCAACAAGACATCAAG : GACCTGAAGCAAACTCTTTTGACTACAAAAGCGGGTATGCAGTTCATGCAAATGAAGTTTCATGAGGAAATGCAAAATATTG : GCATCCACATACATGGCCTAGCACACGCAGCTTCTGGTTATCATAGAGTTCTTGAAGAAAATCGCAGGCTTTACAATCAAGTGCAAGACCTTAAAG : GAAGCATAAGGGTTTATTGTCGAGTAAGACCCTTTTTGCCTGGGCAATCAAGTTATATCAGTAATGTCGATCAT</gDNA_template>
            <first_frame> R  T  Q  Q  F  P  V  G  T  S  S  F  R  N  I  L  Q  P  A  Q  R :   L  T  K  E  L  *  H  *  *  K  K  R  I  A  S  S  V  R  N  F  K  E  G  T  *  C  R  T  H  L  L  T  N  S  N  K  T  S  R :   T  *  S  K  L  F  *  L  Q  K  R  V  C  S  S  C  K  *  S  F  M  R  K  C  K  I  L  :  A  S  T  Y  M  A  *  H  T  Q  L  L  V  I  I  E  F  L  K  K  I  A  G  F  T  I  K  C  K  T  L  K  :  E  A  *  G  F  I  V  E  *  D  P  F  C  L  G  N  Q  V  I  S  V  M  S  I   </first_frame>
            <second_frame>  G  L  S  S  F  L  W  E  Q  V  R  S  E  T  F  F  S  Q  H  K   : G  *  P  K  N  C  N  T  D  E  R  R  E  S  H  R  Q  *  G  T  S  K  K  V  H  D  A  E  H  I  C  *  P  T  A  T  R  H  Q   : G  P  E  A  N  S  F  D  Y  K  S  G  Y  A  V  H  A  N  E  V  S  *  G  N  A  K  Y  W :   H  P  H  T  W  P  S  T  R  S  F  W  L  S  *  S  S  *  R  K  S  Q  A  L  Q  S  S  A  R  P  *  R :   K  H  K  G  L  L  S  S  K  T  L  F  A  W  A  I  K  L  Y  Q  *  C  R  S  </second_frame>
            <third_frame>   D  S  A  V  S  C  G  N  K  F  V  Q  K  H  S  S  A  S  T  K  :  A  D  Q  R  T  V  T  L  M  K  E  E  N  R  I  V  S  E  E  L  Q  R  R  Y  M  M  Q  N  T  F  V  D  Q  Q  Q  Q  D  I  K  :  D  L  K  Q  T  L  L  T  T  K  A  G  M  Q  F  M  Q  M  K  F  H  E  E  M  Q  N  I   : G  I  H  I  H  G  L  A  H  A  A  S  G  Y  H  R  V  L  E  E  N  R  R  L  Y  N  Q  V  Q  D  L  K   : G  S  I  R  V  Y  C  R  V  R  P  F  L  P  G  Q  S  S  Y  I  S  N  V  D  H </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0098A22.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="93608" stop="93667"/>
                    <exon start="93783" stop="93899"/>
                    <exon start="93991" stop="94072"/>
                    <exon start="94179" stop="94274"/>
                    <exon start="94365" stop="94438"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>429</number_coding_nucleotides>
                  <number_encoded_amino_acids>143</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DSAVSCGNKFVQKHSSASTKADQRTVTLMKEENRIVSEELQRRYMMQNTFVDQQQQDIKDLKQTLLTTKAGMQFMQMKFHEEMQNIGIHIHGLAHAASGYHRVLEENRRLYNQVQDLKGSIRVYCRVRPFLPGQSSYISNVDH</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 31 chains have been computed
$ 
$ memory statistics:
$ 9024 bytes spliced alignments in total
$ 4 spliced alignments have been stored
$ 2256 bytes was the average size of a spliced alignment
$ 8512 bytes predicted gene locations in total
$ 3 predicted gene locations have been stored
$ 2837 bytes was the average size of a predicted gene location
$ 9 megabytes was the average size of the backtrace matrix
$ 45 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-16 11:45:58
-->
