<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-16 08:22:50"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E393076" ref_strand="+" ref_description="SGN-E393076 [TUS-37-J4]">
      <seq>taaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaataaaaacagaatttatttttttttgtgtatatagcgagatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0099A03.1" temp_strand="-" temp_description="C06SLm0099A03.1  AC226730.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0099A03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="4721" stop="3823"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4421" g_stop="4097" g_length="325"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="325" r_length="325" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0099A03.1" gen_strand="-" ref_id="SGN-E393076" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>325</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0099A03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E393076" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4421" e_stop="4097"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAAGATATATGTTTTTCTCTTGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGCTTGAGAAAATTGTATTTCGCTGCAATTGTATAATTCGCAATTATATAATTCGTTGGTCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAAATTGTATAATTAAGTGTATAGCACGAAGATATATATTTTTGCATGTGTATATACAATTTTCTCTCGCTTTATACAAAACAGAAACAAAATTTATACACTTCTGTGTATAAAGCGAGAGAG</genome_strand>
        <mrna_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAAAAACAGAATTTATTTTTTTTTGTGTATATAGCGAGATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E393075" ref_strand="+" ref_description="SGN-E393075 [TUS-37-J2]">
      <seq>taaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaatagaaacagaggttttttttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0099A03.1" temp_strand="-" temp_description="C06SLm0099A03.1  AC226730.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0099A03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="4721" stop="3823"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4421" g_stop="4129" g_length="293"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="293" r_length="293" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0099A03.1" gen_strand="-" ref_id="SGN-E393075" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>293</cumulative_length_of_scored_exons>
        <coverage percentage="0.951" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0099A03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E393075" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4421" e_stop="4129"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAAGATATATGTTTTTCTCTTGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGCTTGAGAAAATTGTATTTCGCTGCAATTGTATAATTCGCAATTATATAATTCGTTGGTCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAAATTGTATAATTAAGTGTATAGCACGAAGATATATATTTTTGCATGTGTATATACAATTTTCTCTCGCTTTATACAAAACAGAAACAAA</genome_strand>
        <mrna_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAGAAACAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E392727" ref_strand="+" ref_description="SGN-E392727 [TUS-37-J5]">
      <seq>taatatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtcacgctttatacaaaatttaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0099A03.1" temp_strand="-" temp_description="C06SLm0099A03.1  AC226730.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0099A03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="4721" stop="3969"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4421" g_stop="4269" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="0.915"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0099A03.1" gen_strand="-" ref_id="SGN-E392727" ref_strand="+">
        <total_alignment_score>0.915</total_alignment_score>
        <cumulative_length_of_scored_exons>153</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0099A03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E392727" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4421" e_stop="4269"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAAGATATATGTTTTTCTCTTGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGCTTGAGAAAATTGTATTTCGCTGCAATTGTATAATTCGCAATT</genome_strand>
        <mrna_strand>TAATATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCACGCTTTATACAAAATTTAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E242800" ref_strand="+" ref_description="SGN-E242800 [cLED-31-J1]">
      <seq>gagtgtgagatttgcaaatgctatttgaactctacatggtctttagagttcaaaaatctttgcgattggtactcttatctactcaaaaaatcacccactggtacaatacatgtacacgttcttggaaatgtcattacatcaaatccaaacaacgttgaatacatgcttaaaacaaatttcgataattttcctaaaggaaaacagttttctactatcctcggcgatttattaggccgaggaattttcgccgtagacggcgaaatgtggaagtttcaacggaagatggcaagtttagaactcggacgcgtatcgatacgctcgtacgctttcgatatcgtcagtgacgaaattagaaaccggttgattccgcttttggaaagtaatatccatactgttttggacttacaagatgttttacgacgtttttcgttcgatagcatctgtaaattttcatttggtatggatcctggttgtttgaaattatcattaccagattcagatcttcaagagtcatttgatttagcttcgaaattgtctgctgaaagagctatgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0099A03.1" temp_strand="+" temp_description="C06SLm0099A03.1  AC226730.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0099A03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="5698" stop="6851"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5998" g_stop="6551" g_length="554"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="554" r_length="554" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0099A03.1" gen_strand="+" ref_id="SGN-E242800" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0099A03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E242800" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5998" e_stop="6551"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGTGTGAGATTTGCAAAAGCTATTTGAACTCTACATGGTCTTTAGAGTTCAAAAATCTTTGCGATTGGTACTCTTATCTACTCAAAAAATCACCCACTGGTACAATACATGTACACGTTCTTGGAAATGTCATTACATCAAATCCAAACAACGTTGAATACATGCTTAAAACAAATTTCGATAATTTTCCTAAAGGAAAACAGTTTTCTACTATCCTCGGCGATTTATTAGGCCGAGGAATTTTCGCCGTAGACGGCGAAATGTGGAAGTTTCAACGGAAGATGGCAAGTTTAGAACTCGGACGCGTATCGATACGCTCGTACGCTTTCGATATCGTCAGTGACGAAATTAGAAACCGGTTGATTCCGCTTTTGGAAAGTAATATCCATACTGTTTTGGACTTACAAGATGTTTTACGACGTTTTTCGTTCGATAGCATCTGTAAATTTTCATTTGGTATGGATCCTGGTTGTTTGAAATTATCATTACCAGATTCAGATCTTCAAGAGTCATTTGATTTAGCTTCGAAATTGTCTGCTGAAAGAGCTATGAC</genome_strand>
        <mrna_strand>GAGTGTGAGATTTGCAAATGCTATTTGAACTCTACATGGTCTTTAGAGTTCAAAAATCTTTGCGATTGGTACTCTTATCTACTCAAAAAATCACCCACTGGTACAATACATGTACACGTTCTTGGAAATGTCATTACATCAAATCCAAACAACGTTGAATACATGCTTAAAACAAATTTCGATAATTTTCCTAAAGGAAAACAGTTTTCTACTATCCTCGGCGATTTATTAGGCCGAGGAATTTTCGCCGTAGACGGCGAAATGTGGAAGTTTCAACGGAAGATGGCAAGTTTAGAACTCGGACGCGTATCGATACGCTCGTACGCTTTCGATATCGTCAGTGACGAAATTAGAAACCGGTTGATTCCGCTTTTGGAAAGTAATATCCATACTGTTTTGGACTTACAAGATGTTTTACGACGTTTTTCGTTCGATAGCATCTGTAAATTTTCATTTGGTATGGATCCTGGTTGTTTGAAATTATCATTACCAGATTCAGATCTTCAAGAGTCATTTGATTTAGCTTCGAAATTGTCTGCTGAAAGAGCTATGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E268119" ref_strand="+" ref_description="SGN-E268119 [cLEI-15-O17]">
      <seq>gacggtttcacctttagtgtggaaaattaaaaggagtttgaatattggatcagaaaagaagctaaaagaagcgatcgaaaaagttgatgtacttgctgaggaggtaataattcagaaaagaaaaaacgatttttcttcccaaaatgacgttttgtctaggttcatgaggaatattgatgatgataaactccttagggacattatcgtcagttttctattggcgggtagagacactgttgcgtccggactgactacttttttttggctactagctcaacatccacatgttattaatgaaattcgagctgagtcgaatcgagtaatgggaaaaacagtaaatggaactctagctactttcgaaggaattcgggaaatgcattttttgactgcagctatacatgagagtattaggctatttccgcctgttcaatttgattccaagttttgtcaagaagacgatacgctccctgatggtacgttcgtggctaaagggacgagggtgacgtatcatccatatgcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0099A03.1" temp_strand="+" temp_description="C06SLm0099A03.1  AC226730.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0099A03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="6249" stop="7369"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6549" g_stop="7069" g_length="521"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="521" r_length="521" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0099A03.1" gen_strand="+" ref_id="SGN-E268119" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>521</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0099A03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E268119" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6549" e_stop="7069"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACGGTTTCACCTTTAGTGTGGAAAATTAAAAGGAGTTTGAATATTGGATCAGAAAAGAAGCTAAAAGAAGCGATCGAAAAAGTTGATGTACTTGCTGAGGAGGTAATAATTCAGAAAAGAAAAAACGATTTTTCTTCCCAAAATGACGTTTTGTCTAGGTTCATGAGGAATATTGATGATGATAAACTCCTTAGGGACATTATCGTCAGTTTTCTATTGGCGGGTAGAGACACTGTTGCGTCCGGACTGACTACTTTTTTTTGGCTACTAGCTCAACATCCACATGTTATTAATGAAATTCGAGCTGAGTCGAATCGAGTAATGGGAAAAACAGTAAATGGAACTCTAGCTACTTTCGAAGGAATTCGGGAAATGCATTTTTTGACTGCAGCTATACATGAGAGTATTAGGCTATTTCCGCCTGTTCAATTTGATTCCAAGTTTTGTCAAGAAGACGATACGCTCCCTGATGGTACGTTCGTGGCTAAAGGGACGAGGGTGACGTATCATCCATATGCAA</genome_strand>
        <mrna_strand>GACGGTTTCACCTTTAGTGTGGAAAATTAAAAGGAGTTTGAATATTGGATCAGAAAAGAAGCTAAAAGAAGCGATCGAAAAAGTTGATGTACTTGCTGAGGAGGTAATAATTCAGAAAAGAAAAAACGATTTTTCTTCCCAAAATGACGTTTTGTCTAGGTTCATGAGGAATATTGATGATGATAAACTCCTTAGGGACATTATCGTCAGTTTTCTATTGGCGGGTAGAGACACTGTTGCGTCCGGACTGACTACTTTTTTTTGGCTACTAGCTCAACATCCACATGTTATTAATGAAATTCGAGCTGAGTCGAATCGAGTAATGGGAAAAACAGTAAATGGAACTCTAGCTACTTTCGAAGGAATTCGGGAAATGCATTTTTTGACTGCAGCTATACATGAGAGTATTAGGCTATTTCCGCCTGTTCAATTTGATTCCAAGTTTTGTCAAGAAGACGATACGCTCCCTGATGGTACGTTCGTGGCTAAAGGGACGAGGGTGACGTATCATCCATATGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E240100" ref_strand="+" ref_description="SGN-E240100 [cLED-32-E24]">
      <seq>gaagcgatcgaaaaagttgatgtacttgctgaggaggtaataattcagaaaagaaaaaacgatttttcttcccaaaatgacgttttgtctaggttcatgaggaatattgatgatgataaactccttagggacattatcgtcagttttctattggcgggtagagacactgttgcgtccggactgactacttttttttggctactagctcaacatccacatgttattaatgaaattcgagctgagtcgaatcgagtaatgggaaaaacagtaaatggaactctagctactttcgaaggaattcgggaaatgcattttttgactgcagctatacatgagagtattaggctatttccgcctgttcaatttgattccaagttttgtcaagaagacgatacgctccctgatggtacgttcgtggctaaagggacgagggtgacgtatcatccatatgcaatggggaggatggagggtatttggggtaaagattgtttagaattcaagcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0099A03.1" temp_strand="+" temp_description="C06SLm0099A03.1  AC226730.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0099A03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="6316" stop="7419"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6616" g_stop="7119" g_length="504"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="504" r_length="504" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0099A03.1" gen_strand="+" ref_id="SGN-E240100" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>504</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0099A03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E240100" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6616" e_stop="7119"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGCGATCGAAAAAGTTGATGTACTTGCTGAGGAGGTAATAATTCAGAAAAGAAAAAACGATTTTTCTTCCCAAAATGACGTTTTGTCTAGGTTCATGAGGAATATTGATGATGATAAACTCCTTAGGGACATTATCGTCAGTTTTCTATTGGCGGGTAGAGACACTGTTGCGTCCGGACTGACTACTTTTTTTTGGCTACTAGCTCAACATCCACATGTTATTAATGAAATTCGAGCTGAGTCGAATCGAGTAATGGGAAAAACAGTAAATGGAACTCTAGCTACTTTCGAAGGAATTCGGGAAATGCATTTTTTGACTGCAGCTATACATGAGAGTATTAGGCTATTTCCGCCTGTTCAATTTGATTCCAAGTTTTGTCAAGAAGACGATACGCTCCCTGATGGTACGTTCGTGGCTAAAGGGACGAGGGTGACGTATCATCCATATGCAATGGGGAGGATGGAGGGTATTTGGGGTAAAGATTGTTTAGAATTCAAGCCA</genome_strand>
        <mrna_strand>GAAGCGATCGAAAAAGTTGATGTACTTGCTGAGGAGGTAATAATTCAGAAAAGAAAAAACGATTTTTCTTCCCAAAATGACGTTTTGTCTAGGTTCATGAGGAATATTGATGATGATAAACTCCTTAGGGACATTATCGTCAGTTTTCTATTGGCGGGTAGAGACACTGTTGCGTCCGGACTGACTACTTTTTTTTGGCTACTAGCTCAACATCCACATGTTATTAATGAAATTCGAGCTGAGTCGAATCGAGTAATGGGAAAAACAGTAAATGGAACTCTAGCTACTTTCGAAGGAATTCGGGAAATGCATTTTTTGACTGCAGCTATACATGAGAGTATTAGGCTATTTCCGCCTGTTCAATTTGATTCCAAGTTTTGTCAAGAAGACGATACGCTCCCTGATGGTACGTTCGTGGCTAAAGGGACGAGGGTGACGTATCATCCATATGCAATGGGGAGGATGGAGGGTATTTGGGGTAAAGATTGTTTAGAATTCAAGCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E239580" ref_strand="+" ref_description="SGN-E239580 [cLED-23-D21]">
      <seq>gaagcgatcgaaaaagttgatgtacttgctgaggaggtaataattcagaaaagaaaaaacgatttttcttcccaaaatgacgttttgtctaggttcatgaggaatattgatgatgataaactccttagggacattatcgtcagttttctattggcgggtagagacactgttgcgtccggactgactacttttttttggctactagctcaacatccacatgttattaatgaaattcgagctgagtcgaatcgagtaatgggaaaaacagtaaatggaactctagctactttcgaaggaattcgggaaatgcattttttgactgcagctatacatgagagtattaggctattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0099A03.1" temp_strand="+" temp_description="C06SLm0099A03.1  AC226730.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0099A03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="6316" stop="7266"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6616" g_stop="6966" g_length="351"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="351" r_length="351" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0099A03.1" gen_strand="+" ref_id="SGN-E239580" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>351</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0099A03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E239580" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6616" e_stop="6966"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGCGATCGAAAAAGTTGATGTACTTGCTGAGGAGGTAATAATTCAGAAAAGAAAAAACGATTTTTCTTCCCAAAATGACGTTTTGTCTAGGTTCATGAGGAATATTGATGATGATAAACTCCTTAGGGACATTATCGTCAGTTTTCTATTGGCGGGTAGAGACACTGTTGCGTCCGGACTGACTACTTTTTTTTGGCTACTAGCTCAACATCCACATGTTATTAATGAAATTCGAGCTGAGTCGAATCGAGTAATGGGAAAAACAGTAAATGGAACTCTAGCTACTTTCGAAGGAATTCGGGAAATGCATTTTTTGACTGCAGCTATACATGAGAGTATTAGGCTATTT</genome_strand>
        <mrna_strand>GAAGCGATCGAAAAAGTTGATGTACTTGCTGAGGAGGTAATAATTCAGAAAAGAAAAAACGATTTTTCTTCCCAAAATGACGTTTTGTCTAGGTTCATGAGGAATATTGATGATGATAAACTCCTTAGGGACATTATCGTCAGTTTTCTATTGGCGGGTAGAGACACTGTTGCGTCCGGACTGACTACTTTTTTTTGGCTACTAGCTCAACATCCACATGTTATTAATGAAATTCGAGCTGAGTCGAATCGAGTAATGGGAAAAACAGTAAATGGAACTCTAGCTACTTTCGAAGGAATTCGGGAAATGCATTTTTTGACTGCAGCTATACATGAGAGTATTAGGCTATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E378248" ref_strand="+" ref_description="SGN-E378248 [TUS-18-O3]">
      <seq>agcgatcgaaaaagttgatgtacttgctgaggaggtaataattcagaaaagaaaaaacgatttttcttcccaaaatgacgttttgtctaggttcatgaggaatattgatgatgataaactccttagggacattatcgtcagttttctattggcgggtagagacactgttgcgtccggactgactacttttttttggctactagctcaacatccacatgttattaatgaaattcgagctgagtcgaatcgagtaatgggaaaaacagtaaatggaactctagctactttcgaaggaattcgggaaatgcattttttgactgcagctatacatgagagtattaggctatttccgcctgttcaatttgattccaagttttgtcaagaagacgatacgctccctgatggtacgttcgtggctaaagggacgagggtgacgtatcatccatatgcaatggggaggatggagggtatttggggtaaagattgtttagaattcaagccagaaagatggttggaagacggggtttttaaggcacagtgtccttttaaatatcccgtttttcaaggtggtgttagggtttgtttgggtaaagatttatctattgtggaaatgaagagtgttgctttggctttgattaggcaattcgactttcaagttcatttggctaaagaccaggcacctaagttcatgccgggattgacagccaccgtgagaggcggacttcccatcatggttcaaaaagacgagaancatagacactgacacgaattcaagatttagagtcagtattgtacaacttttgtaattaattattagtttatacttctatcttttagctagcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0099A03.1" temp_strand="+" temp_description="C06SLm0099A03.1  AC226730.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0099A03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="6318" stop="7761"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6618" g_stop="7461" g_length="844"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="843" r_length="843" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0099A03.1" gen_strand="+" ref_id="SGN-E378248" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>844</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0099A03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E378248" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6618" e_stop="7461"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCGATCGAAAAAGTTGATGTACTTGCTGAGGAGGTAATAATTCAGAAAAGAAAAAACGATTTTTCTTCCCAAAATGACGTTTTGTCTAGGTTCATGAGGAATATTGATGATGATAAACTCCTTAGGGACATTATCGTCAGTTTTCTATTGGCGGGTAGAGACACTGTTGCGTCCGGACTGACTACTTTTTTTTGGCTACTAGCTCAACATCCACATGTTATTAATGAAATTCGAGCTGAGTCGAATCGAGTAATGGGAAAAACAGTAAATGGAACTCTAGCTACTTTCGAAGGAATTCGGGAAATGCATTTTTTGACTGCAGCTATACATGAGAGTATTAGGCTATTTCCGCCTGTTCAATTTGATTCCAAGTTTTGTCAAGAAGACGATACGCTCCCTGATGGTACGTTCGTGGCTAAAGGGACGAGGGTGACGTATCATCCATATGCAATGGGGAGGATGGAGGGTATTTGGGGTAAAGATTGTTTAGAATTCAAGCCAGAAAGATGGTTGGAAGACGGGGTTTTTAAGGCACAGTGTCCTTTTAAATATCCCGTTTTTCAAGGTGGTGTTAGGGTTTGTTTGGGTAAAGATTTATCTATTGTGGAAATGAAGAGTGTTGCTTTGGCTTTGATTAGGCAATTCGACTTTCAAGTTCATTTGGCTAAAGACCAGGCACCTAAGTTCATGCCGGGATTGACAGCCACCGTGAGAGGCGGACTTCCCATCATGGTTCAAAAAAGACGAGAACAATAGACACTGACACGAATTCAAGATTTAGAGTCAGTATTGTACAACTTTTGTAATTAATTATTAGTTTATACTTCTATCTTTTAGCTAGCG</genome_strand>
        <mrna_strand>AGCGATCGAAAAAGTTGATGTACTTGCTGAGGAGGTAATAATTCAGAAAAGAAAAAACGATTTTTCTTCCCAAAATGACGTTTTGTCTAGGTTCATGAGGAATATTGATGATGATAAACTCCTTAGGGACATTATCGTCAGTTTTCTATTGGCGGGTAGAGACACTGTTGCGTCCGGACTGACTACTTTTTTTTGGCTACTAGCTCAACATCCACATGTTATTAATGAAATTCGAGCTGAGTCGAATCGAGTAATGGGAAAAACAGTAAATGGAACTCTAGCTACTTTCGAAGGAATTCGGGAAATGCATTTTTTGACTGCAGCTATACATGAGAGTATTAGGCTATTTCCGCCTGTTCAATTTGATTCCAAGTTTTGTCAAGAAGACGATACGCTCCCTGATGGTACGTTCGTGGCTAAAGGGACGAGGGTGACGTATCATCCATATGCAATGGGGAGGATGGAGGGTATTTGGGGTAAAGATTGTTTAGAATTCAAGCCAGAAAGATGGTTGGAAGACGGGGTTTTTAAGGCACAGTGTCCTTTTAAATATCCCGTTTTTCAAGGTGGTGTTAGGGTTTGTTTGGGTAAAGATTTATCTATTGTGGAAATGAAGAGTGTTGCTTTGGCTTTGATTAGGCAATTCGACTTTCAAGTTCATTTGGCTAAAGACCAGGCACCTAAGTTCATGCCGGGATTGACAGCCACCGTGAGAGGCGGACTTCCCATCATGGTTC-AAAAAGACGAGAANCATAGACACTGACACGAATTCAAGATTTAGAGTCAGTATTGTACAACTTTTGTAATTAATTATTAGTTTATACTTCTATCTTTTAGCTAGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E231481" ref_strand="+" ref_description="SGN-E231481 [cLED-4-I4]">
      <seq>agcgatcgaaaaagttgatgtacttgctgaggaggtaataattcagaaaagaaaaaacgatttttcttcccaaaatgacgttttgtctaggttcatgaggaatattgatgatgataaactccttagggacattatcgtcagttttctattggcgggtagagacactgttgcgtccggactgactacttttttttggctactagctcaacatccacatgttattaatgaaattcgagctgagtcgaatcgagtaatgggaaaaacagtaaatggaactctagctactttcgaaggaattcgggaaatgcattttttgactgcagctatacatgagagtattaggctatttccgcctgttcaatttgattccaagttttgtcaagaagacgatacgctccctgatggtacgttcgtggctaaagggacgagggtgacgtatcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0099A03.1" temp_strand="+" temp_description="C06SLm0099A03.1  AC226730.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0099A03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="6318" stop="7359"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6618" g_stop="7059" g_length="442"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="442" r_length="442" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0099A03.1" gen_strand="+" ref_id="SGN-E231481" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>442</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0099A03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E231481" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6618" e_stop="7059"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCGATCGAAAAAGTTGATGTACTTGCTGAGGAGGTAATAATTCAGAAAAGAAAAAACGATTTTTCTTCCCAAAATGACGTTTTGTCTAGGTTCATGAGGAATATTGATGATGATAAACTCCTTAGGGACATTATCGTCAGTTTTCTATTGGCGGGTAGAGACACTGTTGCGTCCGGACTGACTACTTTTTTTTGGCTACTAGCTCAACATCCACATGTTATTAATGAAATTCGAGCTGAGTCGAATCGAGTAATGGGAAAAACAGTAAATGGAACTCTAGCTACTTTCGAAGGAATTCGGGAAATGCATTTTTTGACTGCAGCTATACATGAGAGTATTAGGCTATTTCCGCCTGTTCAATTTGATTCCAAGTTTTGTCAAGAAGACGATACGCTCCCTGATGGTACGTTCGTGGCTAAAGGGACGAGGGTGACGTATCAT</genome_strand>
        <mrna_strand>AGCGATCGAAAAAGTTGATGTACTTGCTGAGGAGGTAATAATTCAGAAAAGAAAAAACGATTTTTCTTCCCAAAATGACGTTTTGTCTAGGTTCATGAGGAATATTGATGATGATAAACTCCTTAGGGACATTATCGTCAGTTTTCTATTGGCGGGTAGAGACACTGTTGCGTCCGGACTGACTACTTTTTTTTGGCTACTAGCTCAACATCCACATGTTATTAATGAAATTCGAGCTGAGTCGAATCGAGTAATGGGAAAAACAGTAAATGGAACTCTAGCTACTTTCGAAGGAATTCGGGAAATGCATTTTTTGACTGCAGCTATACATGAGAGTATTAGGCTATTTCCGCCTGTTCAATTTGATTCCAAGTTTTGTCAAGAAGACGATACGCTCCCTGATGGTACGTTCGTGGCTAAAGGGACGAGGGTGACGTATCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E325192" ref_strand="+" ref_description="SGN-E325192 [cTOC-13-N10]">
      <seq>gagagaaagatggttggaagacggggtttttaaggcacagtgtccttttaaatatcccgtttttcaaggtggtgttagggtttgtttgggtaaagatttatctattgtggaaatgaagagtgttgctttggctttgattaggcaattcgactttcaagttcatttggctaaagaccaggcacctaagttcatgccgggattgacagccaccgtgagaggcggacttcccatcatggttcaaaaaagacgagaacaatagacactgacacgaattcaagatttagagtcagtattgtacaacttttgtaattaattattagtttatacttctatcttttagctagcgttttaggcttagagcaagctgaactatgtgtatatagacgactaacgtcaaaaaagcttatgacttatgatgatataataacaaaattgttcaaannaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0099A03.1" temp_strand="+" temp_description="C06SLm0099A03.1  AC226730.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0099A03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="6819" stop="7862"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7116" g_stop="7565" g_length="450"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="450" r_length="450" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="451" polyA_stop="487"/>
      <MATCH_line gen_id="C06SLm0099A03.1" gen_strand="+" ref_id="SGN-E325192" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>450</cumulative_length_of_scored_exons>
        <coverage percentage="0.924" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0099A03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E325192" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7116" e_stop="7565"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCAGAAAGATGGTTGGAAGACGGGGTTTTTAAGGCACAGTGTCCTTTTAAATATCCCGTTTTTCAAGGTGGTGTTAGGGTTTGTTTGGGTAAAGATTTATCTATTGTGGAAATGAAGAGTGTTGCTTTGGCTTTGATTAGGCAATTCGACTTTCAAGTTCATTTGGCTAAAGACCAGGCACCTAAGTTCATGCCGGGATTGACAGCCACCGTGAGAGGCGGACTTCCCATCATGGTTCAAAAAAGACGAGAACAATAGACACTGACACGAATTCAAGATTTAGAGTCAGTATTGTACAACTTTTGTAATTAATTATTAGTTTATACTTCTATCTTTTAGCTAGCGTTTTAGGCTTAGAGCAAGCTGAACTATGTGTATATAGACGACTAACGTCAAAAAAGCTTATGACTTATGATGATATAATAACAAAATTGTTCAAAAAAATATTG</genome_strand>
        <mrna_strand>GAGAGAAAGATGGTTGGAAGACGGGGTTTTTAAGGCACAGTGTCCTTTTAAATATCCCGTTTTTCAAGGTGGTGTTAGGGTTTGTTTGGGTAAAGATTTATCTATTGTGGAAATGAAGAGTGTTGCTTTGGCTTTGATTAGGCAATTCGACTTTCAAGTTCATTTGGCTAAAGACCAGGCACCTAAGTTCATGCCGGGATTGACAGCCACCGTGAGAGGCGGACTTCCCATCATGGTTCAAAAAAGACGAGAACAATAGACACTGACACGAATTCAAGATTTAGAGTCAGTATTGTACAACTTTTGTAATTAATTATTAGTTTATACTTCTATCTTTTAGCTAGCGTTTTAGGCTTAGAGCAAGCTGAACTATGTGTATATAGACGACTAACGTCAAAAAAGCTTATGACTTATGATGATATAATAACAAAATTGTTCAAANNAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E205976" ref_strand="+" ref_description="SGN-E205976 [cLEC-20-G22]">
      <seq>ttgctcgtttctcagtttgctgcacacaagaagacaagaagcacaaataatcaatagcaaatgtacgcagcaaaagaagccaagatcgagtccaagatcgagtaaaatgggtctgtcaagtaatcaagaaaatagagtgatttgtcaaagccaaaaataatatattaaaggtataagttgatacaaataaggaaaaccttaaatatattagtaaggaaagaagttgtatataataaggattgtgctttaaaagggaatccttgtttaataataacttccttatcttatctgataaggactgaaggcaaaaggaactctataagaagaagaagacgctgatgaagaaaatgaggacttcatgcagagaacaagggagaattattcatcaaattgaagtcttcaaggttgataggattactacgtgtaaaacattcttgagtaagaaggttttatcgtgtagaactatttgtcttgtttttgttcttaattgtagtttacagtttattgtacaaagggtgggtttggctctttgtagggttgagtgttagtaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0099A03.1" temp_strand="-" temp_description="C06SLm0099A03.1  AC226730.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0099A03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="15490" stop="14365"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15183" g_stop="14665" g_length="519"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="552" r_length="519" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0099A03.1" gen_strand="-" ref_id="SGN-E205976" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="0.940" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0099A03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E205976" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15183" e_stop="14665"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAGAAGCACAAATAATCAATAGCAAATGTACGCAGCAAAAGAAGCCAAAATCGAGTCCAAGATCGAGTAAAATGGGTCAGCCAAGTAATCAAGAAAATAGAGTTATTTGTCAAAGCCAAAAATAATATATTAAAGGTATAAGTTGATACAAATAAGGAAAACTTTAAATATATTATTAAGGAAGGAAGTTGTATATAATAAGGATTGTACTTTAAAAGGGAATCCTTGTTTAATAATAACTTCCTTACCTTATCTGATAAGGACTGAAGGCAAAAGGAACTCTATAAGAAGAAGAAGACGCGTATGAAGAATACGACGACTTCACGCAGAGAACAAGGGAGAATTATTCATCAAATTGAAGTCTTCAAGGTTGATAGGATTACTACGTTTAAAACATTCTTGAGTAAGAAGGTTTTATCGTGTAGAACTATTTGTCTTGTTTTTGTTCTTAATTGTAGTTTACAGTTTATTGTACAAAGGGTGGGTTTGACTCTTTGTAGGGTTGAGTGTTAGTAAG</genome_strand>
        <mrna_strand>ACAAGAAGCACAAATAATCAATAGCAAATGTACGCAGCAAAAGAAGCCAAGATCGAGTCCAAGATCGAGTAAAATGGGTCTGTCAAGTAATCAAGAAAATAGAGTGATTTGTCAAAGCCAAAAATAATATATTAAAGGTATAAGTTGATACAAATAAGGAAAACCTTAAATATATTAGTAAGGAAAGAAGTTGTATATAATAAGGATTGTGCTTTAAAAGGGAATCCTTGTTTAATAATAACTTCCTTATCTTATCTGATAAGGACTGAAGGCAAAAGGAACTCTATAAGAAGAAGAAGACGCTGATGAAGAAAATGAGGACTTCATGCAGAGAACAAGGGAGAATTATTCATCAAATTGAAGTCTTCAAGGTTGATAGGATTACTACGTGTAAAACATTCTTGAGTAAGAAGGTTTTATCGTGTAGAACTATTTGTCTTGTTTTTGTTCTTAATTGTAGTTTACAGTTTATTGTACAAAGGGTGGGTTTGGCTCTTTGTAGGGTTGAGTGTTAGTAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E202839" ref_strand="+" ref_description="SGN-E202839 [cLEB-1-I2]">
      <seq>gcacgagtaaaggtccgccattcggaggctcactttgcttaaaatctccacaagaagagaagatgaaggttatcgccgcttacttgttggccgtcttgggtggcaacacctccccttcagagaaggatttgaagaaaatccttgcatctgttggagctgaggctgatgatgataggattcaactactactctctcaagttgagggcaaagatatcactgagttgattgctgccggcagagaaaaattggcttcagtacctgctggtggaggtgctgcttgtgcagttgctgcacctggtggtggcggtgctgcacctgctgctgaggagaagaaggaagaaaagaaagtggaagaaaaagaagagtcagacgatgacatgggtttcagtcttttcgattagaagtcgaagaaatcagtttatgaagtatccccttttccatttgttgttccccttgagagtgtattttaggaggtttattgtctacttacagattttgcttgaacttagaattttcatggaaaacatttgcaaacagttgaaattataatatgtatttcaaatgttcagcttggttcaatatatctaccctttttgatcttacaatattaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0099A03.1" temp_strand="+" temp_description="C06SLm0099A03.1  AC226730.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0099A03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="21013" stop="23308"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21313" g_stop="21364" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="0.942"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21365" i_stop="21453" i_length="89">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21454" g_stop="21551" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="150" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21552" i_stop="22542" i_length="991">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.511" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22543" g_stop="23010" g_length="468"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="618" r_length="468" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0099A03.1" gen_strand="+" ref_id="SGN-E202839" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>618</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0099A03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E202839" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21313" e_stop="21364"/>
          <exon e_start="21454" e_stop="21551"/>
          <exon e_start="22543" e_stop="23010"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGCACTAAAGGTCCGCCATTCGGAGGCTCACTTTGCTTAAAATCTCCACAGTACTTTCTCCCTCTCAATTTTCTATTGTTCGTAGTTTATTTTCTGCTCTTTATCTGAATTTTTTGTTTGTTGTGTTAATTTTGATCAGAGAAGAGAAGATGAAGGTTATCGCCGCTTACTTGTTGGCCGTCTTGGGTGGCAACACCTCCCCTTCAGAGAAGGATTTGAAGAAAATCCTTGCATCTGGTACGACCTTAGAGCCCATCTTACGGTTTTGTTGCATATGGATCCGAAATGTGTTGCCATTTATATATAACTCTATAGCGATTGATACGTGAAGTTATTTATTAGTATGTCTATGTAGTTGGTTTATGTGCCTAAATTACTTGTGCGATTTAGCTCAATTGCTAGAGATTAGATAATATTAGCGACAATGAGAGAAGTGCCAGCTTATATTGTGACAATTTTACTTGTGATTGTAATAGAGGTAGCTGAAGAAAATATTGTAGGAATGGTGAAAAAATAGTTTGGTAGAGATTTTTCAGAAATTGGAATTGTTTGAAGTGTGTGAAAGTTATATACTAGTTCATATAAGTGAATTAGGGTTAAATATTTTGGGATCTAGGGAAACCCTTGAATGCCGAGTGTGTAAATTGGGACTGAAGAGTAGTTAGGGGTTATGGAATAGCATCAAGTTAAACTCGTTCCTTGCCTTCGTTCAAGTTACCAGGTTTAGTAGTGGCTATTATGACCATGGGTAAAGTTTATTATTTTCGTTTTTCATGGTTCTCAAAGTAAGTTTGAGTTAGTCTGCAATGATGCCTGCGTAAGTTTATCCGTCTTGTGCCCTACCTGCTTGACCTGTCTGGAAGAAAAGTACACTGTAATACTTGTTTTCTTTTGCATTAAGAACCCTGCCATAATTGATTCAACTTCAAATATCGAAAGTTGATGCAATCTAATCACCTTGATGCTATTGTGTATTATTCTATATTGGGTTTTCTCTCTGAAGTATCTTAAACTGATTACATGTAATTTAGTTGATCCTACTGAACTAGAATATATTGAATCCCGAATTTCACTGTTTTTATGTTTTGTCTTGTATGTAACTGGCTATACGTAATTAGGTTCATGCTCCCATAATAAACTGTGCTGGCTTGTTGTTCTTAACTGTGATATACATGTCTGCTGGTTTTAGTGGTTCATTTTGAATTAACACTCGTCGTACATGCTGCAGTTGGAGCTGAGGCTGATGATGATAGGATTCAACTACTACTCTCTCAAGTTGAGGGCAAAGATATCACTGAGTTGATTGCTGCCGGCAGAGAAAAATTGGCTTCAGTACCTGCTGGTGGAGGTGCTGCTTGTGCAGTTGCTGCACCTGGTGGTGGCGGTGCTGCACCTGCTGCTGAGGAGAAGAAGGAAGAAAAGAAAGTGGAAGAAAAAGAAGAGTCAGACGATGACATGGGTTTCAGTCTTTTCGATTAGAAGTCGAAGAAATCAGTTTATGAAGTATCCCCTTTTCCATTTGTTGTTCCCCTTGAGAGTGTATTTTAGGAGGTTTATTGTCTACTTACAGATTTTGCTTGAACTTAGAATTTTCATGGAAAACATTTGCAAACAGTTGAAATTATAATATGTATTTCAAATGTTCAGCTTGGTTCAATATATCTACCCTTTTTGATCTTACAATATTAAAACAATG</genome_strand>
        <mrna_strand>GCACGAGTAAAGGTCCGCCATTCGGAGGCTCACTTTGCTTAAAATCTCCACA.........................................................................................AGAAGAGAAGATGAAGGTTATCGCCGCTTACTTGTTGGCCGTCTTGGGTGGCAACACCTCCCCTTCAGAGAAGGATTTGAAGAAAATCCTTGCATCTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAGCTGAGGCTGATGATGATAGGATTCAACTACTACTCTCTCAAGTTGAGGGCAAAGATATCACTGAGTTGATTGCTGCCGGCAGAGAAAAATTGGCTTCAGTACCTGCTGGTGGAGGTGCTGCTTGTGCAGTTGCTGCACCTGGTGGTGGCGGTGCTGCACCTGCTGCTGAGGAGAAGAAGGAAGAAAAGAAAGTGGAAGAAAAAGAAGAGTCAGACGATGACATGGGTTTCAGTCTTTTCGATTAGAAGTCGAAGAAATCAGTTTATGAAGTATCCCCTTTTCCATTTGTTGTTCCCCTTGAGAGTGTATTTTAGGAGGTTTATTGTCTACTTACAGATTTTGCTTGAACTTAGAATTTTCATGGAAAACATTTGCAAACAGTTGAAATTATAATATGTATTTCAAATGTTCAGCTTGGTTCAATATATCTACCCTTTTTGATCTTACAATATTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E484503" ref_strand="+" ref_description="SGN-E484503 [cSTE-13-J13]">
      <seq>gcagcactgaaggtccgccatttgaaggctcaatttgctcaaaatctccaaaaaaagagaaaatgaaggttatcgccgcttacttgttggccgtcttaggtggcaacacctgcccttcagagaacgatttgaagaaaatccttgcatctgttggagctgaggctgatgatgataggattcaacttcttctctctcaagttgagggcaaagatatcactgagctgattgctgccggcagaaaaaagttggcttcagtacctgctggtggaggtgctgcttgtgcagttgctgcacctggtggtggcggtgctgctgcacctgctgctgcggagaagaaggaacaaaagatagtggaacaaaaagaagagtcagatgatgacatgggcttcagtcttttctattagaagaaggctaagaattcagcttatgaagtggcgtcccct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0099A03.1" temp_strand="+" temp_description="C06SLm0099A03.1  AC226730.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0099A03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="21152" stop="23056"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21313" g_stop="21364" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="0.885"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21365" i_stop="21453" i_length="89">
            <donor d_prob="0.997" d_score="0.88"/>
            <acceptor a_prob="0.993" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21454" g_stop="21551" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="150" r_length="98" r_score="0.949"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21552" i_stop="22542" i_length="991">
            <donor d_prob="0.972" d_score="0.96"/>
            <acceptor a_prob="0.511" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22543" g_stop="22795" g_length="253"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="406" r_length="256" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0099A03.1" gen_strand="+" ref_id="SGN-E484503" ref_strand="+">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>403</cumulative_length_of_scored_exons>
        <coverage percentage="0.910" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0099A03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E484503" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21313" e_stop="21364"/>
          <exon e_start="21454" e_stop="21551"/>
          <exon e_start="22543" e_stop="22795"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGCACTAAAGGTCCGCCATTCGGAGGCTCACTTTGCTTAAAATCTCCACAGTACTTTCTCCCTCTCAATTTTCTATTGTTCGTAGTTTATTTTCTGCTCTTTATCTGAATTTTTTGTTTGTTGTGTTAATTTTGATCAGAGAAGAGAAGATGAAGGTTATCGCCGCTTACTTGTTGGCCGTCTTGGGTGGCAACACCTCCCCTTCAGAGAAGGATTTGAAGAAAATCCTTGCATCTGGTACGACCTTAGAGCCCATCTTACGGTTTTGTTGCATATGGATCCGAAATGTGTTGCCATTTATATATAACTCTATAGCGATTGATACGTGAAGTTATTTATTAGTATGTCTATGTAGTTGGTTTATGTGCCTAAATTACTTGTGCGATTTAGCTCAATTGCTAGAGATTAGATAATATTAGCGACAATGAGAGAAGTGCCAGCTTATATTGTGACAATTTTACTTGTGATTGTAATAGAGGTAGCTGAAGAAAATATTGTAGGAATGGTGAAAAAATAGTTTGGTAGAGATTTTTCAGAAATTGGAATTGTTTGAAGTGTGTGAAAGTTATATACTAGTTCATATAAGTGAATTAGGGTTAAATATTTTGGGATCTAGGGAAACCCTTGAATGCCGAGTGTGTAAATTGGGACTGAAGAGTAGTTAGGGGTTATGGAATAGCATCAAGTTAAACTCGTTCCTTGCCTTCGTTCAAGTTACCAGGTTTAGTAGTGGCTATTATGACCATGGGTAAAGTTTATTATTTTCGTTTTTCATGGTTCTCAAAGTAAGTTTGAGTTAGTCTGCAATGATGCCTGCGTAAGTTTATCCGTCTTGTGCCCTACCTGCTTGACCTGTCTGGAAGAAAAGTACACTGTAATACTTGTTTTCTTTTGCATTAAGAACCCTGCCATAATTGATTCAACTTCAAATATCGAAAGTTGATGCAATCTAATCACCTTGATGCTATTGTGTATTATTCTATATTGGGTTTTCTCTCTGAAGTATCTTAAACTGATTACATGTAATTTAGTTGATCCTACTGAACTAGAATATATTGAATCCCGAATTTCACTGTTTTTATGTTTTGTCTTGTATGTAACTGGCTATACGTAATTAGGTTCATGCTCCCATAATAAACTGTGCTGGCTTGTTGTTCTTAACTGTGATATACATGTCTGCTGGTTTTAGTGGTTCATTTTGAATTAACACTCGTCGTACATGCTGCAGTTGGAGCTGAGGCTGATGATGATAGGATTCAACTACTACTCTCTCAAGTTGAGGGCAAAGATATCACTGAGTTGATTGCTGCCGGCAGAGAAAAATTGGCTTCAGTACCTGCTGGTGGAGGTGCTGCTTGTGCAGTTGCTGCACCTGGTGGTGGC-G-G-TGCTGCACCTGCTGCTGAGGAGAAGAAGGAAGAAAAGAAAGTGGAAGAAAAAGAAGAGTCAGACGATGACATGGGTTTCAGTCTTTTCGATTAGAA</genome_strand>
        <mrna_strand>GCAGCACTGAAGGTCCGCCATTTGAAGGCTCAATTTGCTCAAAATCTCCAAA.........................................................................................AAAAGAGAAAATGAAGGTTATCGCCGCTTACTTGTTGGCCGTCTTAGGTGGCAACACCTGCCCTTCAGAGAACGATTTGAAGAAAATCCTTGCATCTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAGCTGAGGCTGATGATGATAGGATTCAACTTCTTCTCTCTCAAGTTGAGGGCAAAGATATCACTGAGCTGATTGCTGCCGGCAGAAAAAAGTTGGCTTCAGTACCTGCTGGTGGAGGTGCTGCTTGTGCAGTTGCTGCACCTGGTGGTGGCGGTGCTGCTGCACCTGCTGCTGCGGAGAAGAAGGAACAAAAGATAGTGGAACAAAAAGAAGAGTCAGATGATGACATGGGCTTCAGTCTTTTCTATTAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E281328" ref_strand="-" ref_description="SGN-E281328 [cLEL-1-B2](-)">
      <seq>gcacgagtaaaggtccgccattcggttgctcactttgcttaaaatctccacgagaagagaagatgaaggttatcgtcgcttacttgttggccgtcttgggtggcaacacctccccttcagagaaggatttgaagaaaatccttgcatctgttggagctgaggctgatgatgataggattcaactactactctctcaagttgagggcaaagatatcactgagttgattgctgccggcagagaaaaattggcttcagtacctgctggtggaggtgctgcttgtgcagttgctgcacctggtggtggcggtgctgcacct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0099A03.1" temp_strand="+" temp_description="C06SLm0099A03.1  AC226730.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0099A03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="21013" stop="23009"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21313" g_stop="21364" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="0.885"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21365" i_stop="21453" i_length="89">
            <donor d_prob="0.997" d_score="0.88"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21454" g_stop="21551" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="150" r_length="98" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21552" i_stop="22542" i_length="991">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.511" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22543" g_stop="22709" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="317" r_length="167" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0099A03.1" gen_strand="+" ref_id="SGN-E281328" ref_strand="-">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>317</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0099A03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E281328" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="21313" e_stop="21364"/>
          <exon e_start="21454" e_stop="21551"/>
          <exon e_start="22543" e_stop="22709"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGCACTAAAGGTCCGCCATTCGGAGGCTCACTTTGCTTAAAATCTCCACAGTACTTTCTCCCTCTCAATTTTCTATTGTTCGTAGTTTATTTTCTGCTCTTTATCTGAATTTTTTGTTTGTTGTGTTAATTTTGATCAGAGAAGAGAAGATGAAGGTTATCGCCGCTTACTTGTTGGCCGTCTTGGGTGGCAACACCTCCCCTTCAGAGAAGGATTTGAAGAAAATCCTTGCATCTGGTACGACCTTAGAGCCCATCTTACGGTTTTGTTGCATATGGATCCGAAATGTGTTGCCATTTATATATAACTCTATAGCGATTGATACGTGAAGTTATTTATTAGTATGTCTATGTAGTTGGTTTATGTGCCTAAATTACTTGTGCGATTTAGCTCAATTGCTAGAGATTAGATAATATTAGCGACAATGAGAGAAGTGCCAGCTTATATTGTGACAATTTTACTTGTGATTGTAATAGAGGTAGCTGAAGAAAATATTGTAGGAATGGTGAAAAAATAGTTTGGTAGAGATTTTTCAGAAATTGGAATTGTTTGAAGTGTGTGAAAGTTATATACTAGTTCATATAAGTGAATTAGGGTTAAATATTTTGGGATCTAGGGAAACCCTTGAATGCCGAGTGTGTAAATTGGGACTGAAGAGTAGTTAGGGGTTATGGAATAGCATCAAGTTAAACTCGTTCCTTGCCTTCGTTCAAGTTACCAGGTTTAGTAGTGGCTATTATGACCATGGGTAAAGTTTATTATTTTCGTTTTTCATGGTTCTCAAAGTAAGTTTGAGTTAGTCTGCAATGATGCCTGCGTAAGTTTATCCGTCTTGTGCCCTACCTGCTTGACCTGTCTGGAAGAAAAGTACACTGTAATACTTGTTTTCTTTTGCATTAAGAACCCTGCCATAATTGATTCAACTTCAAATATCGAAAGTTGATGCAATCTAATCACCTTGATGCTATTGTGTATTATTCTATATTGGGTTTTCTCTCTGAAGTATCTTAAACTGATTACATGTAATTTAGTTGATCCTACTGAACTAGAATATATTGAATCCCGAATTTCACTGTTTTTATGTTTTGTCTTGTATGTAACTGGCTATACGTAATTAGGTTCATGCTCCCATAATAAACTGTGCTGGCTTGTTGTTCTTAACTGTGATATACATGTCTGCTGGTTTTAGTGGTTCATTTTGAATTAACACTCGTCGTACATGCTGCAGTTGGAGCTGAGGCTGATGATGATAGGATTCAACTACTACTCTCTCAAGTTGAGGGCAAAGATATCACTGAGTTGATTGCTGCCGGCAGAGAAAAATTGGCTTCAGTACCTGCTGGTGGAGGTGCTGCTTGTGCAGTTGCTGCACCTGGTGGTGGCGGTGCTGCACCT</genome_strand>
        <mrna_strand>GCACGAGTAAAGGTCCGCCATTCGGTTGCTCACTTTGCTTAAAATCTCCACG.........................................................................................AGAAGAGAAGATGAAGGTTATCGTCGCTTACTTGTTGGCCGTCTTGGGTGGCAACACCTCCCCTTCAGAGAAGGATTTGAAGAAAATCCTTGCATCTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAGCTGAGGCTGATGATGATAGGATTCAACTACTACTCTCTCAAGTTGAGGGCAAAGATATCACTGAGTTGATTGCTGCCGGCAGAGAAAAATTGGCTTCAGTACCTGCTGGTGGAGGTGCTGCTTGTGCAGTTGCTGCACCTGGTGGTGGCGGTGCTGCACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E342645" ref_strand="+" ref_description="SGN-E342645 [cTOF-7-F21]">
      <seq>cagcactaaaggtccgccattcggaggctcactttgcttaaaatctccacaagaagagaagatgaaggttatcgccgcttacttgttggccgtcttgggtggcaacacctccccttcagagaaggatttgaagaaaatccttgcatctgttggagctgaggctgatgatgataggattcaactactactctctcaagttgagggcaaagatatcactgagttgattgctgccggcagagaaaaattggcttcagtacctgctggtggaggtgctgcttgtgcagttgctgcacctggtggtggcggtgctgcacctgctgctgaggagaagaaggaagaaaagaaagtggaagaaaaagaagagtcagacgatgacatgggtttcagtcttttcgattagaagtcgaagaaatcagtttatgaagtatccccttttccatttgttgttccccttgagagtgtattttaggaggtttattgtctacttacagattttgcttgaacttagaattttcatggaaaacatttgcaaacagttgaaattataatatgtatttcaaatgttcagcttggttcaatatatctaccctttttgatcttacaatattaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0099A03.1" temp_strand="+" temp_description="C06SLm0099A03.1  AC226730.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0099A03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="21014" stop="23308"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21314" g_stop="21364" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21365" i_stop="21453" i_length="89">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21454" g_stop="21551" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="149" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21552" i_stop="22542" i_length="991">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.511" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22543" g_stop="23009" g_length="467"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="616" r_length="467" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0099A03.1" gen_strand="+" ref_id="SGN-E342645" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>616</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0099A03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E342645" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21314" e_stop="21364"/>
          <exon e_start="21454" e_stop="21551"/>
          <exon e_start="22543" e_stop="23009"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCACTAAAGGTCCGCCATTCGGAGGCTCACTTTGCTTAAAATCTCCACAGTACTTTCTCCCTCTCAATTTTCTATTGTTCGTAGTTTATTTTCTGCTCTTTATCTGAATTTTTTGTTTGTTGTGTTAATTTTGATCAGAGAAGAGAAGATGAAGGTTATCGCCGCTTACTTGTTGGCCGTCTTGGGTGGCAACACCTCCCCTTCAGAGAAGGATTTGAAGAAAATCCTTGCATCTGGTACGACCTTAGAGCCCATCTTACGGTTTTGTTGCATATGGATCCGAAATGTGTTGCCATTTATATATAACTCTATAGCGATTGATACGTGAAGTTATTTATTAGTATGTCTATGTAGTTGGTTTATGTGCCTAAATTACTTGTGCGATTTAGCTCAATTGCTAGAGATTAGATAATATTAGCGACAATGAGAGAAGTGCCAGCTTATATTGTGACAATTTTACTTGTGATTGTAATAGAGGTAGCTGAAGAAAATATTGTAGGAATGGTGAAAAAATAGTTTGGTAGAGATTTTTCAGAAATTGGAATTGTTTGAAGTGTGTGAAAGTTATATACTAGTTCATATAAGTGAATTAGGGTTAAATATTTTGGGATCTAGGGAAACCCTTGAATGCCGAGTGTGTAAATTGGGACTGAAGAGTAGTTAGGGGTTATGGAATAGCATCAAGTTAAACTCGTTCCTTGCCTTCGTTCAAGTTACCAGGTTTAGTAGTGGCTATTATGACCATGGGTAAAGTTTATTATTTTCGTTTTTCATGGTTCTCAAAGTAAGTTTGAGTTAGTCTGCAATGATGCCTGCGTAAGTTTATCCGTCTTGTGCCCTACCTGCTTGACCTGTCTGGAAGAAAAGTACACTGTAATACTTGTTTTCTTTTGCATTAAGAACCCTGCCATAATTGATTCAACTTCAAATATCGAAAGTTGATGCAATCTAATCACCTTGATGCTATTGTGTATTATTCTATATTGGGTTTTCTCTCTGAAGTATCTTAAACTGATTACATGTAATTTAGTTGATCCTACTGAACTAGAATATATTGAATCCCGAATTTCACTGTTTTTATGTTTTGTCTTGTATGTAACTGGCTATACGTAATTAGGTTCATGCTCCCATAATAAACTGTGCTGGCTTGTTGTTCTTAACTGTGATATACATGTCTGCTGGTTTTAGTGGTTCATTTTGAATTAACACTCGTCGTACATGCTGCAGTTGGAGCTGAGGCTGATGATGATAGGATTCAACTACTACTCTCTCAAGTTGAGGGCAAAGATATCACTGAGTTGATTGCTGCCGGCAGAGAAAAATTGGCTTCAGTACCTGCTGGTGGAGGTGCTGCTTGTGCAGTTGCTGCACCTGGTGGTGGCGGTGCTGCACCTGCTGCTGAGGAGAAGAAGGAAGAAAAGAAAGTGGAAGAAAAAGAAGAGTCAGACGATGACATGGGTTTCAGTCTTTTCGATTAGAAGTCGAAGAAATCAGTTTATGAAGTATCCCCTTTTCCATTTGTTGTTCCCCTTGAGAGTGTATTTTAGGAGGTTTATTGTCTACTTACAGATTTTGCTTGAACTTAGAATTTTCATGGAAAACATTTGCAAACAGTTGAAATTATAATATGTATTTCAAATGTTCAGCTTGGTTCAATATATCTACCCTTTTTGATCTTACAATATTAAAACAAT</genome_strand>
        <mrna_strand>CAGCACTAAAGGTCCGCCATTCGGAGGCTCACTTTGCTTAAAATCTCCACA.........................................................................................AGAAGAGAAGATGAAGGTTATCGCCGCTTACTTGTTGGCCGTCTTGGGTGGCAACACCTCCCCTTCAGAGAAGGATTTGAAGAAAATCCTTGCATCTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAGCTGAGGCTGATGATGATAGGATTCAACTACTACTCTCTCAAGTTGAGGGCAAAGATATCACTGAGTTGATTGCTGCCGGCAGAGAAAAATTGGCTTCAGTACCTGCTGGTGGAGGTGCTGCTTGTGCAGTTGCTGCACCTGGTGGTGGCGGTGCTGCACCTGCTGCTGAGGAGAAGAAGGAAGAAAAGAAAGTGGAAGAAAAAGAAGAGTCAGACGATGACATGGGTTTCAGTCTTTTCGATTAGAAGTCGAAGAAATCAGTTTATGAAGTATCCCCTTTTCCATTTGTTGTTCCCCTTGAGAGTGTATTTTAGGAGGTTTATTGTCTACTTACAGATTTTGCTTGAACTTAGAATTTTCATGGAAAACATTTGCAAACAGTTGAAATTATAATATGTATTTCAAATGTTCAGCTTGGTTCAATATATCTACCCTTTTTGATCTTACAATATTAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E348359" ref_strand="+" ref_description="SGN-E348359 [cTOF-27-E9]">
      <seq>cagcactaaaggtccgccattcggaggctcactttgcttaaaatctccacaagaagagaagatgaaggttatcgccgcttacttgttggccgtcttgggtggcaacacctccccttcagagaaggatttgaagaaaatccttgcatctgttggagctgaggctgatgatgataggattcaactactactctctcaagttgagggcaaagatatcactgagttgattgctgccggcagagaaaaattggcttcagtacctgctggtggaggtgctgcttgtgcagttgctgcacctggtggtggcggtgctgcacctgctgctgaggagaagaaggaagaaaagaaagtggaagaaaaagaagagtcagacgatgacatgggtttcagtcttttcgattagaagtcgaagaaatcagtttatgaagtatccccttttccatttgttgttccccttgagagtgtattttaggaggtttattgtctacttacagattttgcttgaacttagaattttcatggaaaacatttgcaaacagttgaaattataatatgtatttcaaatgttcagcttggttcaatatatctac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0099A03.1" temp_strand="+" temp_description="C06SLm0099A03.1  AC226730.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0099A03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="21014" stop="23280"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21314" g_stop="21364" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21365" i_stop="21453" i_length="89">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21454" g_stop="21551" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="149" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21552" i_stop="22542" i_length="991">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.511" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22543" g_stop="22980" g_length="438"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="587" r_length="438" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0099A03.1" gen_strand="+" ref_id="SGN-E348359" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>587</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0099A03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E348359" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21314" e_stop="21364"/>
          <exon e_start="21454" e_stop="21551"/>
          <exon e_start="22543" e_stop="22980"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCACTAAAGGTCCGCCATTCGGAGGCTCACTTTGCTTAAAATCTCCACAGTACTTTCTCCCTCTCAATTTTCTATTGTTCGTAGTTTATTTTCTGCTCTTTATCTGAATTTTTTGTTTGTTGTGTTAATTTTGATCAGAGAAGAGAAGATGAAGGTTATCGCCGCTTACTTGTTGGCCGTCTTGGGTGGCAACACCTCCCCTTCAGAGAAGGATTTGAAGAAAATCCTTGCATCTGGTACGACCTTAGAGCCCATCTTACGGTTTTGTTGCATATGGATCCGAAATGTGTTGCCATTTATATATAACTCTATAGCGATTGATACGTGAAGTTATTTATTAGTATGTCTATGTAGTTGGTTTATGTGCCTAAATTACTTGTGCGATTTAGCTCAATTGCTAGAGATTAGATAATATTAGCGACAATGAGAGAAGTGCCAGCTTATATTGTGACAATTTTACTTGTGATTGTAATAGAGGTAGCTGAAGAAAATATTGTAGGAATGGTGAAAAAATAGTTTGGTAGAGATTTTTCAGAAATTGGAATTGTTTGAAGTGTGTGAAAGTTATATACTAGTTCATATAAGTGAATTAGGGTTAAATATTTTGGGATCTAGGGAAACCCTTGAATGCCGAGTGTGTAAATTGGGACTGAAGAGTAGTTAGGGGTTATGGAATAGCATCAAGTTAAACTCGTTCCTTGCCTTCGTTCAAGTTACCAGGTTTAGTAGTGGCTATTATGACCATGGGTAAAGTTTATTATTTTCGTTTTTCATGGTTCTCAAAGTAAGTTTGAGTTAGTCTGCAATGATGCCTGCGTAAGTTTATCCGTCTTGTGCCCTACCTGCTTGACCTGTCTGGAAGAAAAGTACACTGTAATACTTGTTTTCTTTTGCATTAAGAACCCTGCCATAATTGATTCAACTTCAAATATCGAAAGTTGATGCAATCTAATCACCTTGATGCTATTGTGTATTATTCTATATTGGGTTTTCTCTCTGAAGTATCTTAAACTGATTACATGTAATTTAGTTGATCCTACTGAACTAGAATATATTGAATCCCGAATTTCACTGTTTTTATGTTTTGTCTTGTATGTAACTGGCTATACGTAATTAGGTTCATGCTCCCATAATAAACTGTGCTGGCTTGTTGTTCTTAACTGTGATATACATGTCTGCTGGTTTTAGTGGTTCATTTTGAATTAACACTCGTCGTACATGCTGCAGTTGGAGCTGAGGCTGATGATGATAGGATTCAACTACTACTCTCTCAAGTTGAGGGCAAAGATATCACTGAGTTGATTGCTGCCGGCAGAGAAAAATTGGCTTCAGTACCTGCTGGTGGAGGTGCTGCTTGTGCAGTTGCTGCACCTGGTGGTGGCGGTGCTGCACCTGCTGCTGAGGAGAAGAAGGAAGAAAAGAAAGTGGAAGAAAAAGAAGAGTCAGACGATGACATGGGTTTCAGTCTTTTCGATTAGAAGTCGAAGAAATCAGTTTATGAAGTATCCCCTTTTCCATTTGTTGTTCCCCTTGAGAGTGTATTTTAGGAGGTTTATTGTCTACTTACAGATTTTGCTTGAACTTAGAATTTTCATGGAAAACATTTGCAAACAGTTGAAATTATAATATGTATTTCAAATGTTCAGCTTGGTTCAATATATCTAC</genome_strand>
        <mrna_strand>CAGCACTAAAGGTCCGCCATTCGGAGGCTCACTTTGCTTAAAATCTCCACA.........................................................................................AGAAGAGAAGATGAAGGTTATCGCCGCTTACTTGTTGGCCGTCTTGGGTGGCAACACCTCCCCTTCAGAGAAGGATTTGAAGAAAATCCTTGCATCTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAGCTGAGGCTGATGATGATAGGATTCAACTACTACTCTCTCAAGTTGAGGGCAAAGATATCACTGAGTTGATTGCTGCCGGCAGAGAAAAATTGGCTTCAGTACCTGCTGGTGGAGGTGCTGCTTGTGCAGTTGCTGCACCTGGTGGTGGCGGTGCTGCACCTGCTGCTGAGGAGAAGAAGGAAGAAAAGAAAGTGGAAGAAAAAGAAGAGTCAGACGATGACATGGGTTTCAGTCTTTTCGATTAGAAGTCGAAGAAATCAGTTTATGAAGTATCCCCTTTTCCATTTGTTGTTCCCCTTGAGAGTGTATTTTAGGAGGTTTATTGTCTACTTACAGATTTTGCTTGAACTTAGAATTTTCATGGAAAACATTTGCAAACAGTTGAAATTATAATATGTATTTCAAATGTTCAGCTTGGTTCAATATATCTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E468612" ref_strand="+" ref_description="SGN-E468612 [cSTB-5-I2]">
      <seq>cagcactgaaggtccgccatttgaaggctcaatttgctcaaaatctccaaaaaaagagaaaatgaaggttatcgccgcttacttgttggccgtcttaggtggcaacacctgcccttcagagaaggatttgaagaaaatccttgcatctgttggagctgaggctgatgatgataggattcaacttcttctctctcaagttgagggcaaagatatcactgagctgattgctgccggcagagaaaagttggcttcagtacctgctggtggaggtgctgcttgtgcagttgctgcacctggtggtggcggtgctgctgcacctgctgctgcggagaagaaggaagaaacgaaagtggaagaaaaagaggtgtcacatgatgacatgggcttcagtcttttcgattagaagaagtcgaagaattcagtttatgaagtgttgtccccttttccatttgatgttccccttggagtgtatttcaggaggttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0099A03.1" temp_strand="+" temp_description="C06SLm0099A03.1  AC226730.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0099A03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="21152" stop="23170"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21314" g_stop="21364" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="0.882"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21365" i_stop="21453" i_length="89">
            <donor d_prob="0.997" d_score="0.88"/>
            <acceptor a_prob="0.993" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21454" g_stop="21551" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="149" r_length="98" r_score="0.959"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21552" i_stop="22542" i_length="991">
            <donor d_prob="0.972" d_score="0.98"/>
            <acceptor a_prob="0.511" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22543" g_stop="22870" g_length="328"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="485" r_length="336" r_score="0.896"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0099A03.1" gen_strand="+" ref_id="SGN-E468612" ref_strand="+">
        <total_alignment_score>0.908</total_alignment_score>
        <cumulative_length_of_scored_exons>477</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0099A03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E468612" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21314" e_stop="21364"/>
          <exon e_start="21454" e_stop="21551"/>
          <exon e_start="22543" e_stop="22870"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCACTAAAGGTCCGCCATTCGGAGGCTCACTTTGCTTAAAATCTCCACAGTACTTTCTCCCTCTCAATTTTCTATTGTTCGTAGTTTATTTTCTGCTCTTTATCTGAATTTTTTGTTTGTTGTGTTAATTTTGATCAGAGAAGAGAAGATGAAGGTTATCGCCGCTTACTTGTTGGCCGTCTTGGGTGGCAACACCTCCCCTTCAGAGAAGGATTTGAAGAAAATCCTTGCATCTGGTACGACCTTAGAGCCCATCTTACGGTTTTGTTGCATATGGATCCGAAATGTGTTGCCATTTATATATAACTCTATAGCGATTGATACGTGAAGTTATTTATTAGTATGTCTATGTAGTTGGTTTATGTGCCTAAATTACTTGTGCGATTTAGCTCAATTGCTAGAGATTAGATAATATTAGCGACAATGAGAGAAGTGCCAGCTTATATTGTGACAATTTTACTTGTGATTGTAATAGAGGTAGCTGAAGAAAATATTGTAGGAATGGTGAAAAAATAGTTTGGTAGAGATTTTTCAGAAATTGGAATTGTTTGAAGTGTGTGAAAGTTATATACTAGTTCATATAAGTGAATTAGGGTTAAATATTTTGGGATCTAGGGAAACCCTTGAATGCCGAGTGTGTAAATTGGGACTGAAGAGTAGTTAGGGGTTATGGAATAGCATCAAGTTAAACTCGTTCCTTGCCTTCGTTCAAGTTACCAGGTTTAGTAGTGGCTATTATGACCATGGGTAAAGTTTATTATTTTCGTTTTTCATGGTTCTCAAAGTAAGTTTGAGTTAGTCTGCAATGATGCCTGCGTAAGTTTATCCGTCTTGTGCCCTACCTGCTTGACCTGTCTGGAAGAAAAGTACACTGTAATACTTGTTTTCTTTTGCATTAAGAACCCTGCCATAATTGATTCAACTTCAAATATCGAAAGTTGATGCAATCTAATCACCTTGATGCTATTGTGTATTATTCTATATTGGGTTTTCTCTCTGAAGTATCTTAAACTGATTACATGTAATTTAGTTGATCCTACTGAACTAGAATATATTGAATCCCGAATTTCACTGTTTTTATGTTTTGTCTTGTATGTAACTGGCTATACGTAATTAGGTTCATGCTCCCATAATAAACTGTGCTGGCTTGTTGTTCTTAACTGTGATATACATGTCTGCTGGTTTTAGTGGTTCATTTTGAATTAACACTCGTCGTACATGCTGCAGTTGGAGCTGAGGCTGATGATGATAGGATTCAACTACTACTCTCTCAAGTTGAGGGCAAAGATATCACTGAGTTGATTGCTGCCGGCAGAGAAAAATTGGCTTCAGTACCTGCTGGTGGAGGTGCTGCTTGTGCAGTTGCTGCACCTGGTGGTGGC-G-G-TGCTGCACCTGCTGCTGAGGAGAAGAAGGAAGAAAAGAAAGTGGAAGAAAAAGAAGAGTCAGACGATGACATGGGTTTCAGTCTTTTCGATTAGAA---GTCGAAGAAATCAGTTTATGAA--G-TATCCCCTTTTCCATTTGTTGTTCCCCTTGAGAGTGTATTTTAGGAGGTTTA</genome_strand>
        <mrna_strand>CAGCACTGAAGGTCCGCCATTTGAAGGCTCAATTTGCTCAAAATCTCCAAA.........................................................................................AAAAGAGAAAATGAAGGTTATCGCCGCTTACTTGTTGGCCGTCTTAGGTGGCAACACCTGCCCTTCAGAGAAGGATTTGAAGAAAATCCTTGCATCTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAGCTGAGGCTGATGATGATAGGATTCAACTTCTTCTCTCTCAAGTTGAGGGCAAAGATATCACTGAGCTGATTGCTGCCGGCAGAGAAAAGTTGGCTTCAGTACCTGCTGGTGGAGGTGCTGCTTGTGCAGTTGCTGCACCTGGTGGTGGCGGTGCTGCTGCACCTGCTGCTGCGGAGAAGAAGGAAGAAACGAAAGTGGAAGAAAAAGAGGTGTCACATGATGACATGGGCTTCAGTCTTTTCGATTAGAAGAAGTCGAAGAATTCAGTTTATGAAGTGTTGTCCCCTTTTCCATTTGATGTTCCCCTTG-GAGTGTATTTCAGGAGGTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E341785" ref_strand="+" ref_description="SGN-E341785 [cTOF-9-C8]">
      <seq>cagcactaaaggtccgccattcggaggctcactttgcttaaaatctccacaagaagagaagatgaaggttatcgccgcttacttgttggccgtcttgggtggcaacacctccccttcagagaaggatttgaagaaaatccttgcatctgttggagctgaggctgatgatgataggattcaactactactctctcaagttgagggcaaagatatcactgatcttgattgctgccggcagagaaaaattggtttcagtacctgctggtggaggtgctgcttgtgcagttgctgcacctggtggtggcggtgctgcacctgctgctgaggagaagaagga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0099A03.1" temp_strand="+" temp_description="C06SLm0099A03.1  AC226730.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0099A03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="21014" stop="23029"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21314" g_stop="21364" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21365" i_stop="21453" i_length="89">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21454" g_stop="21551" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="149" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21552" i_stop="22542" i_length="991">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.511" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22543" g_stop="22729" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="337" r_length="188" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0099A03.1" gen_strand="+" ref_id="SGN-E341785" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>336</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0099A03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E341785" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21314" e_stop="21364"/>
          <exon e_start="21454" e_stop="21551"/>
          <exon e_start="22543" e_stop="22729"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCACTAAAGGTCCGCCATTCGGAGGCTCACTTTGCTTAAAATCTCCACAGTACTTTCTCCCTCTCAATTTTCTATTGTTCGTAGTTTATTTTCTGCTCTTTATCTGAATTTTTTGTTTGTTGTGTTAATTTTGATCAGAGAAGAGAAGATGAAGGTTATCGCCGCTTACTTGTTGGCCGTCTTGGGTGGCAACACCTCCCCTTCAGAGAAGGATTTGAAGAAAATCCTTGCATCTGGTACGACCTTAGAGCCCATCTTACGGTTTTGTTGCATATGGATCCGAAATGTGTTGCCATTTATATATAACTCTATAGCGATTGATACGTGAAGTTATTTATTAGTATGTCTATGTAGTTGGTTTATGTGCCTAAATTACTTGTGCGATTTAGCTCAATTGCTAGAGATTAGATAATATTAGCGACAATGAGAGAAGTGCCAGCTTATATTGTGACAATTTTACTTGTGATTGTAATAGAGGTAGCTGAAGAAAATATTGTAGGAATGGTGAAAAAATAGTTTGGTAGAGATTTTTCAGAAATTGGAATTGTTTGAAGTGTGTGAAAGTTATATACTAGTTCATATAAGTGAATTAGGGTTAAATATTTTGGGATCTAGGGAAACCCTTGAATGCCGAGTGTGTAAATTGGGACTGAAGAGTAGTTAGGGGTTATGGAATAGCATCAAGTTAAACTCGTTCCTTGCCTTCGTTCAAGTTACCAGGTTTAGTAGTGGCTATTATGACCATGGGTAAAGTTTATTATTTTCGTTTTTCATGGTTCTCAAAGTAAGTTTGAGTTAGTCTGCAATGATGCCTGCGTAAGTTTATCCGTCTTGTGCCCTACCTGCTTGACCTGTCTGGAAGAAAAGTACACTGTAATACTTGTTTTCTTTTGCATTAAGAACCCTGCCATAATTGATTCAACTTCAAATATCGAAAGTTGATGCAATCTAATCACCTTGATGCTATTGTGTATTATTCTATATTGGGTTTTCTCTCTGAAGTATCTTAAACTGATTACATGTAATTTAGTTGATCCTACTGAACTAGAATATATTGAATCCCGAATTTCACTGTTTTTATGTTTTGTCTTGTATGTAACTGGCTATACGTAATTAGGTTCATGCTCCCATAATAAACTGTGCTGGCTTGTTGTTCTTAACTGTGATATACATGTCTGCTGGTTTTAGTGGTTCATTTTGAATTAACACTCGTCGTACATGCTGCAGTTGGAGCTGAGGCTGATGATGATAGGATTCAACTACTACTCTCTCAAGTTGAGGGCAAAGATATCACTGA-GTTGATTGCTGCCGGCAGAGAAAAATTGGCTTCAGTACCTGCTGGTGGAGGTGCTGCTTGTGCAGTTGCTGCACCTGGTGGTGGCGGTGCTGCACCTGCTGCTGAGGAGAAGAAGGA</genome_strand>
        <mrna_strand>CAGCACTAAAGGTCCGCCATTCGGAGGCTCACTTTGCTTAAAATCTCCACA.........................................................................................AGAAGAGAAGATGAAGGTTATCGCCGCTTACTTGTTGGCCGTCTTGGGTGGCAACACCTCCCCTTCAGAGAAGGATTTGAAGAAAATCCTTGCATCTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAGCTGAGGCTGATGATGATAGGATTCAACTACTACTCTCTCAAGTTGAGGGCAAAGATATCACTGATCTTGATTGCTGCCGGCAGAGAAAAATTGGTTTCAGTACCTGCTGGTGGAGGTGCTGCTTGTGCAGTTGCTGCACCTGGTGGTGGCGGTGCTGCACCTGCTGCTGAGGAGAAGAAGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E312512" ref_strand="+" ref_description="SGN-E312512 [cLEZ-20-N13]">
      <seq>agcactaattagaagagaagatgaaggttatcgccgcttacttgttggccgtcttgggtggcaacacctccccttcagagaaggatttgaagaaaatccttgcatctgttggagctgaggctgatgatgataggattcaactactactctctcaagttgagggcaaagatatcactgagttgattgctgccggcagagaaaaattggcttcagtacctgctggtggaggtgctgcttgtgcagttgctgcacctggtggtggcggtgctgcacctgctgctgaggagaagaaggaagaaaagaaagtggaagaaaaagaagagtcagacgatgacatgggtttcagtcttttcgattagaagtcgaagaaatcagtttatgaagtatccccttttccatttgttgttccccttgagagtgtattttaggaggtttattgtctacttacagattttgcttgaacttagaattttcatggaaaacatttgcaaacagttgaaattataatatgtatttcaaatgttcagcttggttcaaannaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0099A03.1" temp_strand="+" temp_description="C06SLm0099A03.1  AC226730.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0099A03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="21154" stop="23271"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21315" g_stop="21324" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="10" r_length="10" r_score="0.800"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21325" i_stop="21453" i_length="129">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21454" g_stop="21551" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="108" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21552" i_stop="22542" i_length="991">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.511" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22543" g_stop="22981" g_length="439"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="547" r_length="439" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0099A03.1" gen_strand="+" ref_id="SGN-E312512" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0099A03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E312512" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21315" e_stop="21324"/>
          <exon e_start="21454" e_stop="21551"/>
          <exon e_start="22543" e_stop="22981"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCACTAAAGGTCCGCCATTCGGAGGCTCACTTTGCTTAAAATCTCCACAGTACTTTCTCCCTCTCAATTTTCTATTGTTCGTAGTTTATTTTCTGCTCTTTATCTGAATTTTTTGTTTGTTGTGTTAATTTTGATCAGAGAAGAGAAGATGAAGGTTATCGCCGCTTACTTGTTGGCCGTCTTGGGTGGCAACACCTCCCCTTCAGAGAAGGATTTGAAGAAAATCCTTGCATCTGGTACGACCTTAGAGCCCATCTTACGGTTTTGTTGCATATGGATCCGAAATGTGTTGCCATTTATATATAACTCTATAGCGATTGATACGTGAAGTTATTTATTAGTATGTCTATGTAGTTGGTTTATGTGCCTAAATTACTTGTGCGATTTAGCTCAATTGCTAGAGATTAGATAATATTAGCGACAATGAGAGAAGTGCCAGCTTATATTGTGACAATTTTACTTGTGATTGTAATAGAGGTAGCTGAAGAAAATATTGTAGGAATGGTGAAAAAATAGTTTGGTAGAGATTTTTCAGAAATTGGAATTGTTTGAAGTGTGTGAAAGTTATATACTAGTTCATATAAGTGAATTAGGGTTAAATATTTTGGGATCTAGGGAAACCCTTGAATGCCGAGTGTGTAAATTGGGACTGAAGAGTAGTTAGGGGTTATGGAATAGCATCAAGTTAAACTCGTTCCTTGCCTTCGTTCAAGTTACCAGGTTTAGTAGTGGCTATTATGACCATGGGTAAAGTTTATTATTTTCGTTTTTCATGGTTCTCAAAGTAAGTTTGAGTTAGTCTGCAATGATGCCTGCGTAAGTTTATCCGTCTTGTGCCCTACCTGCTTGACCTGTCTGGAAGAAAAGTACACTGTAATACTTGTTTTCTTTTGCATTAAGAACCCTGCCATAATTGATTCAACTTCAAATATCGAAAGTTGATGCAATCTAATCACCTTGATGCTATTGTGTATTATTCTATATTGGGTTTTCTCTCTGAAGTATCTTAAACTGATTACATGTAATTTAGTTGATCCTACTGAACTAGAATATATTGAATCCCGAATTTCACTGTTTTTATGTTTTGTCTTGTATGTAACTGGCTATACGTAATTAGGTTCATGCTCCCATAATAAACTGTGCTGGCTTGTTGTTCTTAACTGTGATATACATGTCTGCTGGTTTTAGTGGTTCATTTTGAATTAACACTCGTCGTACATGCTGCAGTTGGAGCTGAGGCTGATGATGATAGGATTCAACTACTACTCTCTCAAGTTGAGGGCAAAGATATCACTGAGTTGATTGCTGCCGGCAGAGAAAAATTGGCTTCAGTACCTGCTGGTGGAGGTGCTGCTTGTGCAGTTGCTGCACCTGGTGGTGGCGGTGCTGCACCTGCTGCTGAGGAGAAGAAGGAAGAAAAGAAAGTGGAAGAAAAAGAAGAGTCAGACGATGACATGGGTTTCAGTCTTTTCGATTAGAAGTCGAAGAAATCAGTTTATGAAGTATCCCCTTTTCCATTTGTTGTTCCCCTTGAGAGTGTATTTTAGGAGGTTTATTGTCTACTTACAGATTTTGCTTGAACTTAGAATTTTCATGGAAAACATTTGCAAACAGTTGAAATTATAATATGTATTTCAAATGTTCAGCTTGGTTCAATATATCTACC</genome_strand>
        <mrna_strand>AGCACTAATT.................................................................................................................................AGAAGAGAAGATGAAGGTTATCGCCGCTTACTTGTTGGCCGTCTTGGGTGGCAACACCTCCCCTTCAGAGAAGGATTTGAAGAAAATCCTTGCATCTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAGCTGAGGCTGATGATGATAGGATTCAACTACTACTCTCTCAAGTTGAGGGCAAAGATATCACTGAGTTGATTGCTGCCGGCAGAGAAAAATTGGCTTCAGTACCTGCTGGTGGAGGTGCTGCTTGTGCAGTTGCTGCACCTGGTGGTGGCGGTGCTGCACCTGCTGCTGAGGAGAAGAAGGAAGAAAAGAAAGTGGAAGAAAAAGAAGAGTCAGACGATGACATGGGTTTCAGTCTTTTCGATTAGAAGTCGAAGAAATCAGTTTATGAAGTATCCCCTTTTCCATTTGTTGTTCCCCTTGAGAGTGTATTTTAGGAGGTTTATTGTCTACTTACAGATTTTGCTTGAACTTAGAATTTTCATGGAAAACATTTGCAAACAGTTGAAATTATAATATGTATTTCAAATGTTCAGCTTGGTTCAAANNAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E312509" ref_strand="+" ref_description="SGN-E312509 [cLEZ-20-N3]">
      <seq>agcactaaagagaagagaagatgaaggttatcgccgcttacttgttggccgtcttgggtggcaacacctccccttcagagaaggatttgaagaaaatccttgcatctgttggagctgaggctgatgatgataggattcaactactactctctcaagttgagggcaaagatatcactgagttgattgctgccggcagagaaaaattggcttcagtacctgctggtggaggtgctgcttgtgcagttgctgcacctggtggtggcggtgctgcacctgctgctgaggagaagaaggaagaaaagaaagtggaagaaaaagaagagtcagacgatgacatgggtttcagtcttttcgattagaagtcgaagaaatcagtttatgaagtatccccttttccatttgttgttccccttgagagtgtattttaggaggtttattgtctacttacagattttgcttgaacttagaattttcatggaaaacatttgcaaacagttgaaattataatatgtatttcaaatgttcagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0099A03.1" temp_strand="+" temp_description="C06SLm0099A03.1  AC226730.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0099A03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="21152" stop="23263"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21315" g_stop="21324" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="10" r_length="10" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21325" i_stop="21453" i_length="129">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21454" g_stop="21551" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="108" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21552" i_stop="22542" i_length="991">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.511" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22543" g_stop="22963" g_length="421"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="529" r_length="421" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0099A03.1" gen_strand="+" ref_id="SGN-E312509" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>529</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0099A03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E312509" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21315" e_stop="21324"/>
          <exon e_start="21454" e_stop="21551"/>
          <exon e_start="22543" e_stop="22963"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCACTAAAGGTCCGCCATTCGGAGGCTCACTTTGCTTAAAATCTCCACAGTACTTTCTCCCTCTCAATTTTCTATTGTTCGTAGTTTATTTTCTGCTCTTTATCTGAATTTTTTGTTTGTTGTGTTAATTTTGATCAGAGAAGAGAAGATGAAGGTTATCGCCGCTTACTTGTTGGCCGTCTTGGGTGGCAACACCTCCCCTTCAGAGAAGGATTTGAAGAAAATCCTTGCATCTGGTACGACCTTAGAGCCCATCTTACGGTTTTGTTGCATATGGATCCGAAATGTGTTGCCATTTATATATAACTCTATAGCGATTGATACGTGAAGTTATTTATTAGTATGTCTATGTAGTTGGTTTATGTGCCTAAATTACTTGTGCGATTTAGCTCAATTGCTAGAGATTAGATAATATTAGCGACAATGAGAGAAGTGCCAGCTTATATTGTGACAATTTTACTTGTGATTGTAATAGAGGTAGCTGAAGAAAATATTGTAGGAATGGTGAAAAAATAGTTTGGTAGAGATTTTTCAGAAATTGGAATTGTTTGAAGTGTGTGAAAGTTATATACTAGTTCATATAAGTGAATTAGGGTTAAATATTTTGGGATCTAGGGAAACCCTTGAATGCCGAGTGTGTAAATTGGGACTGAAGAGTAGTTAGGGGTTATGGAATAGCATCAAGTTAAACTCGTTCCTTGCCTTCGTTCAAGTTACCAGGTTTAGTAGTGGCTATTATGACCATGGGTAAAGTTTATTATTTTCGTTTTTCATGGTTCTCAAAGTAAGTTTGAGTTAGTCTGCAATGATGCCTGCGTAAGTTTATCCGTCTTGTGCCCTACCTGCTTGACCTGTCTGGAAGAAAAGTACACTGTAATACTTGTTTTCTTTTGCATTAAGAACCCTGCCATAATTGATTCAACTTCAAATATCGAAAGTTGATGCAATCTAATCACCTTGATGCTATTGTGTATTATTCTATATTGGGTTTTCTCTCTGAAGTATCTTAAACTGATTACATGTAATTTAGTTGATCCTACTGAACTAGAATATATTGAATCCCGAATTTCACTGTTTTTATGTTTTGTCTTGTATGTAACTGGCTATACGTAATTAGGTTCATGCTCCCATAATAAACTGTGCTGGCTTGTTGTTCTTAACTGTGATATACATGTCTGCTGGTTTTAGTGGTTCATTTTGAATTAACACTCGTCGTACATGCTGCAGTTGGAGCTGAGGCTGATGATGATAGGATTCAACTACTACTCTCTCAAGTTGAGGGCAAAGATATCACTGAGTTGATTGCTGCCGGCAGAGAAAAATTGGCTTCAGTACCTGCTGGTGGAGGTGCTGCTTGTGCAGTTGCTGCACCTGGTGGTGGCGGTGCTGCACCTGCTGCTGAGGAGAAGAAGGAAGAAAAGAAAGTGGAAGAAAAAGAAGAGTCAGACGATGACATGGGTTTCAGTCTTTTCGATTAGAAGTCGAAGAAATCAGTTTATGAAGTATCCCCTTTTCCATTTGTTGTTCCCCTTGAGAGTGTATTTTAGGAGGTTTATTGTCTACTTACAGATTTTGCTTGAACTTAGAATTTTCATGGAAAACATTTGCAAACAGTTGAAATTATAATATGTATTTCAAATGTTCAGCT</genome_strand>
        <mrna_strand>AGCACTAAAG.................................................................................................................................AGAAGAGAAGATGAAGGTTATCGCCGCTTACTTGTTGGCCGTCTTGGGTGGCAACACCTCCCCTTCAGAGAAGGATTTGAAGAAAATCCTTGCATCTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAGCTGAGGCTGATGATGATAGGATTCAACTACTACTCTCTCAAGTTGAGGGCAAAGATATCACTGAGTTGATTGCTGCCGGCAGAGAAAAATTGGCTTCAGTACCTGCTGGTGGAGGTGCTGCTTGTGCAGTTGCTGCACCTGGTGGTGGCGGTGCTGCACCTGCTGCTGAGGAGAAGAAGGAAGAAAAGAAAGTGGAAGAAAAAGAAGAGTCAGACGATGACATGGGTTTCAGTCTTTTCGATTAGAAGTCGAAGAAATCAGTTTATGAAGTATCCCCTTTTCCATTTGTTGTTCCCCTTGAGAGTGTATTTTAGGAGGTTTATTGTCTACTTACAGATTTTGCTTGAACTTAGAATTTTCATGGAAAACATTTGCAAACAGTTGAAATTATAATATGTATTTCAAATGTTCAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E713713" ref_strand="+" ref_description="SGN-E713713 [FB09BG04]">
      <seq>tataggtccgccattcggaggctcactttgcttaaaatctccacaagaagagaagatgaaggttatcgccgcttacttgttggccgtcttgggtggcaacacctccccttcagagaaggatttgaagaaaatccttgcatctgttggagctgaggctgatgatgataggattcaactactactctctcaagttgagggcaaagatatcactgagttgattgctgccggcagagaaaaattggcttcagtacctgctggtggaggtgctgcttgtgcagttgctgcacctggtggtggcggtgctgcacctgctgctgaggagaagaaggaagaaaagaaagtggaagaaaaagaagagtcagacgatgacatgggtttcagtcttttcgattagaagtcgaagaaatcagtttatgaagtatccccttttccatttgttgttccccttgagagtgtattttaggaggtttattgtctacttacagattttgcttgaacttagaattttcatggaaaacatttgcaaacagttgaaattataatatgtatttcaaatgttcagcttggttcaatatatctaccctttttgatcttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0099A03.1" temp_strand="+" temp_description="C06SLm0099A03.1  AC226730.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0099A03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="21020" stop="23303"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21320" g_stop="21364" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21365" i_stop="21453" i_length="89">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21454" g_stop="21551" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="143" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21552" i_stop="22542" i_length="991">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.511" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22543" g_stop="23003" g_length="461"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="604" r_length="461" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0099A03.1" gen_strand="+" ref_id="SGN-E713713" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>604</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0099A03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E713713" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21320" e_stop="21364"/>
          <exon e_start="21454" e_stop="21551"/>
          <exon e_start="22543" e_stop="23003"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAGGTCCGCCATTCGGAGGCTCACTTTGCTTAAAATCTCCACAGTACTTTCTCCCTCTCAATTTTCTATTGTTCGTAGTTTATTTTCTGCTCTTTATCTGAATTTTTTGTTTGTTGTGTTAATTTTGATCAGAGAAGAGAAGATGAAGGTTATCGCCGCTTACTTGTTGGCCGTCTTGGGTGGCAACACCTCCCCTTCAGAGAAGGATTTGAAGAAAATCCTTGCATCTGGTACGACCTTAGAGCCCATCTTACGGTTTTGTTGCATATGGATCCGAAATGTGTTGCCATTTATATATAACTCTATAGCGATTGATACGTGAAGTTATTTATTAGTATGTCTATGTAGTTGGTTTATGTGCCTAAATTACTTGTGCGATTTAGCTCAATTGCTAGAGATTAGATAATATTAGCGACAATGAGAGAAGTGCCAGCTTATATTGTGACAATTTTACTTGTGATTGTAATAGAGGTAGCTGAAGAAAATATTGTAGGAATGGTGAAAAAATAGTTTGGTAGAGATTTTTCAGAAATTGGAATTGTTTGAAGTGTGTGAAAGTTATATACTAGTTCATATAAGTGAATTAGGGTTAAATATTTTGGGATCTAGGGAAACCCTTGAATGCCGAGTGTGTAAATTGGGACTGAAGAGTAGTTAGGGGTTATGGAATAGCATCAAGTTAAACTCGTTCCTTGCCTTCGTTCAAGTTACCAGGTTTAGTAGTGGCTATTATGACCATGGGTAAAGTTTATTATTTTCGTTTTTCATGGTTCTCAAAGTAAGTTTGAGTTAGTCTGCAATGATGCCTGCGTAAGTTTATCCGTCTTGTGCCCTACCTGCTTGACCTGTCTGGAAGAAAAGTACACTGTAATACTTGTTTTCTTTTGCATTAAGAACCCTGCCATAATTGATTCAACTTCAAATATCGAAAGTTGATGCAATCTAATCACCTTGATGCTATTGTGTATTATTCTATATTGGGTTTTCTCTCTGAAGTATCTTAAACTGATTACATGTAATTTAGTTGATCCTACTGAACTAGAATATATTGAATCCCGAATTTCACTGTTTTTATGTTTTGTCTTGTATGTAACTGGCTATACGTAATTAGGTTCATGCTCCCATAATAAACTGTGCTGGCTTGTTGTTCTTAACTGTGATATACATGTCTGCTGGTTTTAGTGGTTCATTTTGAATTAACACTCGTCGTACATGCTGCAGTTGGAGCTGAGGCTGATGATGATAGGATTCAACTACTACTCTCTCAAGTTGAGGGCAAAGATATCACTGAGTTGATTGCTGCCGGCAGAGAAAAATTGGCTTCAGTACCTGCTGGTGGAGGTGCTGCTTGTGCAGTTGCTGCACCTGGTGGTGGCGGTGCTGCACCTGCTGCTGAGGAGAAGAAGGAAGAAAAGAAAGTGGAAGAAAAAGAAGAGTCAGACGATGACATGGGTTTCAGTCTTTTCGATTAGAAGTCGAAGAAATCAGTTTATGAAGTATCCCCTTTTCCATTTGTTGTTCCCCTTGAGAGTGTATTTTAGGAGGTTTATTGTCTACTTACAGATTTTGCTTGAACTTAGAATTTTCATGGAAAACATTTGCAAACAGTTGAAATTATAATATGTATTTCAAATGTTCAGCTTGGTTCAATATATCTACCCTTTTTGATCTTACAATATTAA</genome_strand>
        <mrna_strand>TATAGGTCCGCCATTCGGAGGCTCACTTTGCTTAAAATCTCCACA.........................................................................................AGAAGAGAAGATGAAGGTTATCGCCGCTTACTTGTTGGCCGTCTTGGGTGGCAACACCTCCCCTTCAGAGAAGGATTTGAAGAAAATCCTTGCATCTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAGCTGAGGCTGATGATGATAGGATTCAACTACTACTCTCTCAAGTTGAGGGCAAAGATATCACTGAGTTGATTGCTGCCGGCAGAGAAAAATTGGCTTCAGTACCTGCTGGTGGAGGTGCTGCTTGTGCAGTTGCTGCACCTGGTGGTGGCGGTGCTGCACCTGCTGCTGAGGAGAAGAAGGAAGAAAAGAAAGTGGAAGAAAAAGAAGAGTCAGACGATGACATGGGTTTCAGTCTTTTCGATTAGAAGTCGAAGAAATCAGTTTATGAAGTATCCCCTTTTCCATTTGTTGTTCCCCTTGAGAGTGTATTTTAGGAGGTTTATTGTCTACTTACAGATTTTGCTTGAACTTAGAATTTTCATGGAAAACATTTGCAAACAGTTGAAATTATAATATGTATTTCAAATGTTCAGCTTGGTTCAATATATCTACCCTTTTTGATCTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E579007" ref_strand="+" ref_description="SGN-E579007 [86131]">
      <seq>tgaaggtccgccatttgaaggctcaatttgctcaaaatctccaaaaaaagagaaaatgaaggttatcgccgcttacttgttggccgtcttaggtggcaacacctgcccttcagagaaggatttgaagaaaatccttgcatctgttggagctgaggctgatgatgataggattcaacttcttctctctcaagttgagggcaaagatatcactgagctgattgctgccggcagagaaaagttggcttcagtacctgctggtggaggtgctgcttgtgcagttgctgcacctggtggtggcggtgctgctgcacctgctgctgcggagaagaaggaagaaaagaaagtggaagaaaaagaggagtcagatgatgacatgggcttcagtcttttcgattagaagaagtcgaagaattcagtttatgaagtgttgtccccttttccatttgttgttccccttgagtgtattttaggaggtttattgctacttacagattttgcttgaacttagaattttcatggaaaacattggtaaacagttgaaattataatatgtatttcaaatgttcagcttggttcaatatatctatccctttttatcttaaaaaaaaaaaaaaaaaaaaaaaactaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0099A03.1" temp_strand="+" temp_description="C06SLm0099A03.1  AC226730.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0099A03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="21152" stop="23308"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21320" g_stop="21364" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="0.867"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21365" i_stop="21453" i_length="89">
            <donor d_prob="0.997" d_score="0.87"/>
            <acceptor a_prob="0.993" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21454" g_stop="21551" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="143" r_length="98" r_score="0.959"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21552" i_stop="22542" i_length="991">
            <donor d_prob="0.972" d_score="0.98"/>
            <acceptor a_prob="0.511" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22543" g_stop="22996" g_length="454"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="603" r_length="460" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="604" polyA_stop="625"/>
      <MATCH_line gen_id="C06SLm0099A03.1" gen_strand="+" ref_id="SGN-E579007" ref_strand="+">
        <total_alignment_score>0.926</total_alignment_score>
        <cumulative_length_of_scored_exons>597</cumulative_length_of_scored_exons>
        <coverage percentage="0.951" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0099A03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E579007" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21320" e_stop="21364"/>
          <exon e_start="21454" e_stop="21551"/>
          <exon e_start="22543" e_stop="22996"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAGGTCCGCCATTCGGAGGCTCACTTTGCTTAAAATCTCCACAGTACTTTCTCCCTCTCAATTTTCTATTGTTCGTAGTTTATTTTCTGCTCTTTATCTGAATTTTTTGTTTGTTGTGTTAATTTTGATCAGAGAAGAGAAGATGAAGGTTATCGCCGCTTACTTGTTGGCCGTCTTGGGTGGCAACACCTCCCCTTCAGAGAAGGATTTGAAGAAAATCCTTGCATCTGGTACGACCTTAGAGCCCATCTTACGGTTTTGTTGCATATGGATCCGAAATGTGTTGCCATTTATATATAACTCTATAGCGATTGATACGTGAAGTTATTTATTAGTATGTCTATGTAGTTGGTTTATGTGCCTAAATTACTTGTGCGATTTAGCTCAATTGCTAGAGATTAGATAATATTAGCGACAATGAGAGAAGTGCCAGCTTATATTGTGACAATTTTACTTGTGATTGTAATAGAGGTAGCTGAAGAAAATATTGTAGGAATGGTGAAAAAATAGTTTGGTAGAGATTTTTCAGAAATTGGAATTGTTTGAAGTGTGTGAAAGTTATATACTAGTTCATATAAGTGAATTAGGGTTAAATATTTTGGGATCTAGGGAAACCCTTGAATGCCGAGTGTGTAAATTGGGACTGAAGAGTAGTTAGGGGTTATGGAATAGCATCAAGTTAAACTCGTTCCTTGCCTTCGTTCAAGTTACCAGGTTTAGTAGTGGCTATTATGACCATGGGTAAAGTTTATTATTTTCGTTTTTCATGGTTCTCAAAGTAAGTTTGAGTTAGTCTGCAATGATGCCTGCGTAAGTTTATCCGTCTTGTGCCCTACCTGCTTGACCTGTCTGGAAGAAAAGTACACTGTAATACTTGTTTTCTTTTGCATTAAGAACCCTGCCATAATTGATTCAACTTCAAATATCGAAAGTTGATGCAATCTAATCACCTTGATGCTATTGTGTATTATTCTATATTGGGTTTTCTCTCTGAAGTATCTTAAACTGATTACATGTAATTTAGTTGATCCTACTGAACTAGAATATATTGAATCCCGAATTTCACTGTTTTTATGTTTTGTCTTGTATGTAACTGGCTATACGTAATTAGGTTCATGCTCCCATAATAAACTGTGCTGGCTTGTTGTTCTTAACTGTGATATACATGTCTGCTGGTTTTAGTGGTTCATTTTGAATTAACACTCGTCGTACATGCTGCAGTTGGAGCTGAGGCTGATGATGATAGGATTCAACTACTACTCTCTCAAGTTGAGGGCAAAGATATCACTGAGTTGATTGCTGCCGGCAGAGAAAAATTGGCTTCAGTACCTGCTGGTGGAGGTGCTGCTTGTGCAGTTGCTGCACCTGGTGGTGGC-G-G-TGCTGCACCTGCTGCTGAGGAGAAGAAGGAAGAAAAGAAAGTGGAAGAAAAAGAAGAGTCAGACGATGACATGGGTTTCAGTCTTTTCGATT---AGAAGTCGAAGAAATCAGTTTATGAA--G-TATCCCCTTTTCCATTTGTTGTTCCCCTTGAGAGTGTATTTTAGGAGGTTTATTGTCTACTTACAGATTTTGCTTGAACTTAGAATTTTCATGGAAAACATTTGCAAACAGTTGAAATTATAATATGTATTTCAAATGTTCAGCTTGGTTCAATATATCTACCCTTTTTGATCTTACA</genome_strand>
        <mrna_strand>TGAAGGTCCGCCATTTGAAGGCTCAATTTGCTCAAAATCTCCAAA.........................................................................................AAAAGAGAAAATGAAGGTTATCGCCGCTTACTTGTTGGCCGTCTTAGGTGGCAACACCTGCCCTTCAGAGAAGGATTTGAAGAAAATCCTTGCATCTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAGCTGAGGCTGATGATGATAGGATTCAACTTCTTCTCTCTCAAGTTGAGGGCAAAGATATCACTGAGCTGATTGCTGCCGGCAGAGAAAAGTTGGCTTCAGTACCTGCTGGTGGAGGTGCTGCTTGTGCAGTTGCTGCACCTGGTGGTGGCGGTGCTGCTGCACCTGCTGCTGCGGAGAAGAAGGAAGAAAAGAAAGTGGAAGAAAAAGAGGAGTCAGATGATGACATGGGCTTCAGTCTTTTCGATTAGAAGAAGTCGAAGAATTCAGTTTATGAAGTGTTGTCCCCTTTTCCATTTGTTGTTCCCCTT--GAGTGTATTTTAGGAGGTTTATTG-CTACTTACAGATTTTGCTTGAACTTAGAATTTTCATGGAAAACATTGGTAAACAGTTGAAATTATAATATGTATTTCAAATGTTCAGCTTGGTTCAATATATCTATCCCTTTTTATCTTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E587737" ref_strand="+" ref_description="SGN-E587737 [41275]">
      <seq>tgaaggtccgccatttgaaggctcaatttgctcaaaatctccaaaaaaagagaaaatgaaggttatcgccgcttacttgttggccgtcttaggtggcaacacctgcccttcagagaaggatttgaagaaaatccttgcatctgttggagctgaggctgatgatgataggattcaacttcttctctctcaagttgagggcaaagatatcactgagctgattgctgccggcagagaaaagttggcttcagtacctgctggtggaggtgctgcttgtgcagttgctgcacctggtggtggcggtgctgctgcacctgctgctgcggagaagaaggaagaaaagaaagtggaagaaaaagaggagtcagatgatgacatgggcttcagtcttttcgattagaagaagtcgaagaattcagtttatgaagtgttgtccccttttccatttgttgttccccttgagtgtattttaggaggtttattgctacttacagattttgcttgaacttagaattttcatggaaaacattggtaaacagtttgaaattataatatgtatctcaaatgttcagcttggttcaataaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0099A03.1" temp_strand="+" temp_description="C06SLm0099A03.1  AC226730.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0099A03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="21152" stop="23275"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21320" g_stop="21364" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="0.867"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21365" i_stop="21453" i_length="89">
            <donor d_prob="0.997" d_score="0.87"/>
            <acceptor a_prob="0.993" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21454" g_stop="21551" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="143" r_length="98" r_score="0.959"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21552" i_stop="22542" i_length="991">
            <donor d_prob="0.972" d_score="0.98"/>
            <acceptor a_prob="0.511" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22543" g_stop="22979" g_length="437"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="587" r_length="444" r_score="0.908"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0099A03.1" gen_strand="+" ref_id="SGN-E587737" ref_strand="+">
        <total_alignment_score>0.918</total_alignment_score>
        <cumulative_length_of_scored_exons>580</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0099A03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E587737" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21320" e_stop="21364"/>
          <exon e_start="21454" e_stop="21551"/>
          <exon e_start="22543" e_stop="22979"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAGGTCCGCCATTCGGAGGCTCACTTTGCTTAAAATCTCCACAGTACTTTCTCCCTCTCAATTTTCTATTGTTCGTAGTTTATTTTCTGCTCTTTATCTGAATTTTTTGTTTGTTGTGTTAATTTTGATCAGAGAAGAGAAGATGAAGGTTATCGCCGCTTACTTGTTGGCCGTCTTGGGTGGCAACACCTCCCCTTCAGAGAAGGATTTGAAGAAAATCCTTGCATCTGGTACGACCTTAGAGCCCATCTTACGGTTTTGTTGCATATGGATCCGAAATGTGTTGCCATTTATATATAACTCTATAGCGATTGATACGTGAAGTTATTTATTAGTATGTCTATGTAGTTGGTTTATGTGCCTAAATTACTTGTGCGATTTAGCTCAATTGCTAGAGATTAGATAATATTAGCGACAATGAGAGAAGTGCCAGCTTATATTGTGACAATTTTACTTGTGATTGTAATAGAGGTAGCTGAAGAAAATATTGTAGGAATGGTGAAAAAATAGTTTGGTAGAGATTTTTCAGAAATTGGAATTGTTTGAAGTGTGTGAAAGTTATATACTAGTTCATATAAGTGAATTAGGGTTAAATATTTTGGGATCTAGGGAAACCCTTGAATGCCGAGTGTGTAAATTGGGACTGAAGAGTAGTTAGGGGTTATGGAATAGCATCAAGTTAAACTCGTTCCTTGCCTTCGTTCAAGTTACCAGGTTTAGTAGTGGCTATTATGACCATGGGTAAAGTTTATTATTTTCGTTTTTCATGGTTCTCAAAGTAAGTTTGAGTTAGTCTGCAATGATGCCTGCGTAAGTTTATCCGTCTTGTGCCCTACCTGCTTGACCTGTCTGGAAGAAAAGTACACTGTAATACTTGTTTTCTTTTGCATTAAGAACCCTGCCATAATTGATTCAACTTCAAATATCGAAAGTTGATGCAATCTAATCACCTTGATGCTATTGTGTATTATTCTATATTGGGTTTTCTCTCTGAAGTATCTTAAACTGATTACATGTAATTTAGTTGATCCTACTGAACTAGAATATATTGAATCCCGAATTTCACTGTTTTTATGTTTTGTCTTGTATGTAACTGGCTATACGTAATTAGGTTCATGCTCCCATAATAAACTGTGCTGGCTTGTTGTTCTTAACTGTGATATACATGTCTGCTGGTTTTAGTGGTTCATTTTGAATTAACACTCGTCGTACATGCTGCAGTTGGAGCTGAGGCTGATGATGATAGGATTCAACTACTACTCTCTCAAGTTGAGGGCAAAGATATCACTGAGTTGATTGCTGCCGGCAGAGAAAAATTGGCTTCAGTACCTGCTGGTGGAGGTGCTGCTTGTGCAGTTGCTGCACCTGGTGGTGGC-G-G-TGCTGCACCTGCTGCTGAGGAGAAGAAGGAAGAAAAGAAAGTGGAAGAAAAAGAAGAGTCAGACGATGACATGGGTTTCAGTCTTTTCGATT---AGAAGTCGAAGAAATCAGTTTATGAA--G-TATCCCCTTTTCCATTTGTTGTTCCCCTTGAGAGTGTATTTTAGGAGGTTTATTGTCTACTTACAGATTTTGCTTGAACTTAGAATTTTCATGGAAAACATTTGCAAACAG-TTGAAATTATAATATGTATTTCAAATGTTCAGCTTGGTTCAATATATCTA</genome_strand>
        <mrna_strand>TGAAGGTCCGCCATTTGAAGGCTCAATTTGCTCAAAATCTCCAAA.........................................................................................AAAAGAGAAAATGAAGGTTATCGCCGCTTACTTGTTGGCCGTCTTAGGTGGCAACACCTGCCCTTCAGAGAAGGATTTGAAGAAAATCCTTGCATCTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAGCTGAGGCTGATGATGATAGGATTCAACTTCTTCTCTCTCAAGTTGAGGGCAAAGATATCACTGAGCTGATTGCTGCCGGCAGAGAAAAGTTGGCTTCAGTACCTGCTGGTGGAGGTGCTGCTTGTGCAGTTGCTGCACCTGGTGGTGGCGGTGCTGCTGCACCTGCTGCTGCGGAGAAGAAGGAAGAAAAGAAAGTGGAAGAAAAAGAGGAGTCAGATGATGACATGGGCTTCAGTCTTTTCGATTAGAAGAAGTCGAAGAATTCAGTTTATGAAGTGTTGTCCCCTTTTCCATTTGTTGTTCCCCTT--GAGTGTATTTTAGGAGGTTTATTG-CTACTTACAGATTTTGCTTGAACTTAGAATTTTCATGGAAAACATTGGTAAACAGTTTGAAATTATAATATGTATCTCAAATGTTCAGCTTGGTTCAATAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E591521" ref_strand="+" ref_description="SGN-E591521 [45235]">
      <seq>tgaaggtccgccatttgaaggcttaatttgctcaaaatctccaaaaaaagagaaaatgaaggttatcgccgcttacttgttggccgtcttaggtggcaacacctgcccttcagagaaggatttgaagaaaatccttgcatctgttggagctgaggctgatgatgataggattcaacttcttctctctcaagttgagggcaaagatatcactgagctgattgctgccggcagagaaaagttggcttcagtacctgctggtggaggtgctgcttgtgcagttgctgcacctggtggtggcggtgccgctgcacctgctgctgcggagaagaaggaagaaaagaaagtggaagaaaaagaggagtcagatgatgacatgggcttcagtcttttcgattagaagaagtcgaagaattcagtttatgaagtgttgtccccttttccatttgttgttccccttgagtgtattttaggaggtttattgtctacttacagattttgcttgaacttagaattttcatggaaaacattggtaaacagttgaaattataatatgtatttcaaatgttcaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0099A03.1" temp_strand="+" temp_description="C06SLm0099A03.1  AC226730.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0099A03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="21152" stop="23260"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21320" g_stop="21364" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="0.844"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21365" i_stop="21453" i_length="89">
            <donor d_prob="0.997" d_score="0.84"/>
            <acceptor a_prob="0.993" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21454" g_stop="21551" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="143" r_length="98" r_score="0.959"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21552" i_stop="22542" i_length="991">
            <donor d_prob="0.972" d_score="0.98"/>
            <acceptor a_prob="0.511" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22543" g_stop="22960" g_length="418"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="568" r_length="425" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0099A03.1" gen_strand="+" ref_id="SGN-E591521" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0099A03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E591521" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21320" e_stop="21364"/>
          <exon e_start="21454" e_stop="21551"/>
          <exon e_start="22543" e_stop="22960"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAGGTCCGCCATTCGGAGGCTCACTTTGCTTAAAATCTCCACAGTACTTTCTCCCTCTCAATTTTCTATTGTTCGTAGTTTATTTTCTGCTCTTTATCTGAATTTTTTGTTTGTTGTGTTAATTTTGATCAGAGAAGAGAAGATGAAGGTTATCGCCGCTTACTTGTTGGCCGTCTTGGGTGGCAACACCTCCCCTTCAGAGAAGGATTTGAAGAAAATCCTTGCATCTGGTACGACCTTAGAGCCCATCTTACGGTTTTGTTGCATATGGATCCGAAATGTGTTGCCATTTATATATAACTCTATAGCGATTGATACGTGAAGTTATTTATTAGTATGTCTATGTAGTTGGTTTATGTGCCTAAATTACTTGTGCGATTTAGCTCAATTGCTAGAGATTAGATAATATTAGCGACAATGAGAGAAGTGCCAGCTTATATTGTGACAATTTTACTTGTGATTGTAATAGAGGTAGCTGAAGAAAATATTGTAGGAATGGTGAAAAAATAGTTTGGTAGAGATTTTTCAGAAATTGGAATTGTTTGAAGTGTGTGAAAGTTATATACTAGTTCATATAAGTGAATTAGGGTTAAATATTTTGGGATCTAGGGAAACCCTTGAATGCCGAGTGTGTAAATTGGGACTGAAGAGTAGTTAGGGGTTATGGAATAGCATCAAGTTAAACTCGTTCCTTGCCTTCGTTCAAGTTACCAGGTTTAGTAGTGGCTATTATGACCATGGGTAAAGTTTATTATTTTCGTTTTTCATGGTTCTCAAAGTAAGTTTGAGTTAGTCTGCAATGATGCCTGCGTAAGTTTATCCGTCTTGTGCCCTACCTGCTTGACCTGTCTGGAAGAAAAGTACACTGTAATACTTGTTTTCTTTTGCATTAAGAACCCTGCCATAATTGATTCAACTTCAAATATCGAAAGTTGATGCAATCTAATCACCTTGATGCTATTGTGTATTATTCTATATTGGGTTTTCTCTCTGAAGTATCTTAAACTGATTACATGTAATTTAGTTGATCCTACTGAACTAGAATATATTGAATCCCGAATTTCACTGTTTTTATGTTTTGTCTTGTATGTAACTGGCTATACGTAATTAGGTTCATGCTCCCATAATAAACTGTGCTGGCTTGTTGTTCTTAACTGTGATATACATGTCTGCTGGTTTTAGTGGTTCATTTTGAATTAACACTCGTCGTACATGCTGCAGTTGGAGCTGAGGCTGATGATGATAGGATTCAACTACTACTCTCTCAAGTTGAGGGCAAAGATATCACTGAGTTGATTGCTGCCGGCAGAGAAAAATTGGCTTCAGTACCTGCTGGTGGAGGTGCTGCTTGTGCAGTTGCTGCACCTGGTGGTGGCGGT---GCTGCACCTGCTGCTGAGGAGAAGAAGGAAGAAAAGAAAGTGGAAGAAAAAGAAGAGTCAGACGATGACATGGGTTTCAGTCTTTTCGATT---AGAAGTCGAAGAAATCAGTTTATGAA--G-TATCCCCTTTTCCATTTGTTGTTCCCCTTGAGAGTGTATTTTAGGAGGTTTATTGTCTACTTACAGATTTTGCTTGAACTTAGAATTTTCATGGAAAACATTTGCAAACAGTTGAAATTATAATATGTATTTCAAATGTTCA</genome_strand>
        <mrna_strand>TGAAGGTCCGCCATTTGAAGGCTTAATTTGCTCAAAATCTCCAAA.........................................................................................AAAAGAGAAAATGAAGGTTATCGCCGCTTACTTGTTGGCCGTCTTAGGTGGCAACACCTGCCCTTCAGAGAAGGATTTGAAGAAAATCCTTGCATCTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAGCTGAGGCTGATGATGATAGGATTCAACTTCTTCTCTCTCAAGTTGAGGGCAAAGATATCACTGAGCTGATTGCTGCCGGCAGAGAAAAGTTGGCTTCAGTACCTGCTGGTGGAGGTGCTGCTTGTGCAGTTGCTGCACCTGGTGGTGGCGGTGCCGCTGCACCTGCTGCTGCGGAGAAGAAGGAAGAAAAGAAAGTGGAAGAAAAAGAGGAGTCAGATGATGACATGGGCTTCAGTCTTTTCGATTAGAAGAAGTCGAAGAATTCAGTTTATGAAGTGTTGTCCCCTTTTCCATTTGTTGTTCCCCTT--GAGTGTATTTTAGGAGGTTTATTGTCTACTTACAGATTTTGCTTGAACTTAGAATTTTCATGGAAAACATTGGTAAACAGTTGAAATTATAATATGTATTTCAAATGTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E350664" ref_strand="+" ref_description="SGN-E350664 [cTOS-7-M17]">
      <seq>taaaggtccgccattcggaggctcactttgcttaaaatctccacaagaagagaagatgaaggttatcgccgcttacttgttggccgtcttgggtggcaacacctccccttcagagaaggatttgaagaaaatccttgcatctgttggagctgaggctgatgatgataggattcaactactactctctcaagttgagggcaaagatatcactgagttgattgctgccggcagagaaaaattggcttcagtacctgctggtggaggtgctgcttgtgcagttgctgcacctggtggtggcggtgctgcacctgctgctgaggagaagaaggaagaaaagaaagtggaagaaaaagaagagtcagacgatgacatgggtttcagtcttttcgattagaagtcgaagaaatcagtttatgaagtatccccttttccatttgttgttccccttgagagtgattttaggaagtttattgtctacttacagattttgcttgaacttagaattttcatggaaaacatttgcaaacagttgaaattataatatgtat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0099A03.1" temp_strand="+" temp_description="C06SLm0099A03.1  AC226730.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0099A03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="21020" stop="23248"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21320" g_stop="21364" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21365" i_stop="21453" i_length="89">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21454" g_stop="21551" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="143" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21552" i_stop="22542" i_length="991">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.511" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22543" g_stop="22948" g_length="406"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="548" r_length="405" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0099A03.1" gen_strand="+" ref_id="SGN-E350664" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>549</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0099A03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E350664" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21320" e_stop="21364"/>
          <exon e_start="21454" e_stop="21551"/>
          <exon e_start="22543" e_stop="22948"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAGGTCCGCCATTCGGAGGCTCACTTTGCTTAAAATCTCCACAGTACTTTCTCCCTCTCAATTTTCTATTGTTCGTAGTTTATTTTCTGCTCTTTATCTGAATTTTTTGTTTGTTGTGTTAATTTTGATCAGAGAAGAGAAGATGAAGGTTATCGCCGCTTACTTGTTGGCCGTCTTGGGTGGCAACACCTCCCCTTCAGAGAAGGATTTGAAGAAAATCCTTGCATCTGGTACGACCTTAGAGCCCATCTTACGGTTTTGTTGCATATGGATCCGAAATGTGTTGCCATTTATATATAACTCTATAGCGATTGATACGTGAAGTTATTTATTAGTATGTCTATGTAGTTGGTTTATGTGCCTAAATTACTTGTGCGATTTAGCTCAATTGCTAGAGATTAGATAATATTAGCGACAATGAGAGAAGTGCCAGCTTATATTGTGACAATTTTACTTGTGATTGTAATAGAGGTAGCTGAAGAAAATATTGTAGGAATGGTGAAAAAATAGTTTGGTAGAGATTTTTCAGAAATTGGAATTGTTTGAAGTGTGTGAAAGTTATATACTAGTTCATATAAGTGAATTAGGGTTAAATATTTTGGGATCTAGGGAAACCCTTGAATGCCGAGTGTGTAAATTGGGACTGAAGAGTAGTTAGGGGTTATGGAATAGCATCAAGTTAAACTCGTTCCTTGCCTTCGTTCAAGTTACCAGGTTTAGTAGTGGCTATTATGACCATGGGTAAAGTTTATTATTTTCGTTTTTCATGGTTCTCAAAGTAAGTTTGAGTTAGTCTGCAATGATGCCTGCGTAAGTTTATCCGTCTTGTGCCCTACCTGCTTGACCTGTCTGGAAGAAAAGTACACTGTAATACTTGTTTTCTTTTGCATTAAGAACCCTGCCATAATTGATTCAACTTCAAATATCGAAAGTTGATGCAATCTAATCACCTTGATGCTATTGTGTATTATTCTATATTGGGTTTTCTCTCTGAAGTATCTTAAACTGATTACATGTAATTTAGTTGATCCTACTGAACTAGAATATATTGAATCCCGAATTTCACTGTTTTTATGTTTTGTCTTGTATGTAACTGGCTATACGTAATTAGGTTCATGCTCCCATAATAAACTGTGCTGGCTTGTTGTTCTTAACTGTGATATACATGTCTGCTGGTTTTAGTGGTTCATTTTGAATTAACACTCGTCGTACATGCTGCAGTTGGAGCTGAGGCTGATGATGATAGGATTCAACTACTACTCTCTCAAGTTGAGGGCAAAGATATCACTGAGTTGATTGCTGCCGGCAGAGAAAAATTGGCTTCAGTACCTGCTGGTGGAGGTGCTGCTTGTGCAGTTGCTGCACCTGGTGGTGGCGGTGCTGCACCTGCTGCTGAGGAGAAGAAGGAAGAAAAGAAAGTGGAAGAAAAAGAAGAGTCAGACGATGACATGGGTTTCAGTCTTTTCGATTAGAAGTCGAAGAAATCAGTTTATGAAGTATCCCCTTTTCCATTTGTTGTTCCCCTTGAGAGTGTATTTTAGGAGGTTTATTGTCTACTTACAGATTTTGCTTGAACTTAGAATTTTCATGGAAAACATTTGCAAACAGTTGAAATTATAATATGTAT</genome_strand>
        <mrna_strand>TAAAGGTCCGCCATTCGGAGGCTCACTTTGCTTAAAATCTCCACA.........................................................................................AGAAGAGAAGATGAAGGTTATCGCCGCTTACTTGTTGGCCGTCTTGGGTGGCAACACCTCCCCTTCAGAGAAGGATTTGAAGAAAATCCTTGCATCTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAGCTGAGGCTGATGATGATAGGATTCAACTACTACTCTCTCAAGTTGAGGGCAAAGATATCACTGAGTTGATTGCTGCCGGCAGAGAAAAATTGGCTTCAGTACCTGCTGGTGGAGGTGCTGCTTGTGCAGTTGCTGCACCTGGTGGTGGCGGTGCTGCACCTGCTGCTGAGGAGAAGAAGGAAGAAAAGAAAGTGGAAGAAAAAGAAGAGTCAGACGATGACATGGGTTTCAGTCTTTTCGATTAGAAGTCGAAGAAATCAGTTTATGAAGTATCCCCTTTTCCATTTGTTGTTCCCCTTGAGAGTG-ATTTTAGGAAGTTTATTGTCTACTTACAGATTTTGCTTGAACTTAGAATTTTCATGGAAAACATTTGCAAACAGTTGAAATTATAATATGTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E319689" ref_strand="+" ref_description="SGN-E319689 [cTOB-12-L8]">
      <seq>aaaggtccgccattcggaggctcactttgcttaaaatctccacaagaagagaagatgaaggttatcgccgcttacttgttggccgtcttgggtggcaacacctccccttcagagaaggatttgaagaaaatccttgcatctgttggagctgaggctgatgatgataggattcaactactactctctcaagttgagggcaaagatatcactgagttgattgctgccggcagagaaaaattggcttcagtacctgctggtggaggtgctgcttgtgcagttgctgcacctggtggtggcggtgctgcacctgctgctgaggagaagaaggaagaaaagaaagtggaagaaaaagaagagtcagacgatgacatgggtttcagtcttttcgattagaagtcgaagaaatcagtttatgaagtatccccttttccatttgttgttccccttgagagtgtattttaggaggtttattgtctacttacagattttgcttgaacttagaattttcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0099A03.1" temp_strand="+" temp_description="C06SLm0099A03.1  AC226730.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0099A03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="21021" stop="23210"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21321" g_stop="21364" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21365" i_stop="21453" i_length="89">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21454" g_stop="21551" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="142" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21552" i_stop="22542" i_length="991">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.511" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22543" g_stop="22910" g_length="368"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="510" r_length="368" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0099A03.1" gen_strand="+" ref_id="SGN-E319689" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>510</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0099A03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E319689" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21321" e_stop="21364"/>
          <exon e_start="21454" e_stop="21551"/>
          <exon e_start="22543" e_stop="22910"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGGTCCGCCATTCGGAGGCTCACTTTGCTTAAAATCTCCACAGTACTTTCTCCCTCTCAATTTTCTATTGTTCGTAGTTTATTTTCTGCTCTTTATCTGAATTTTTTGTTTGTTGTGTTAATTTTGATCAGAGAAGAGAAGATGAAGGTTATCGCCGCTTACTTGTTGGCCGTCTTGGGTGGCAACACCTCCCCTTCAGAGAAGGATTTGAAGAAAATCCTTGCATCTGGTACGACCTTAGAGCCCATCTTACGGTTTTGTTGCATATGGATCCGAAATGTGTTGCCATTTATATATAACTCTATAGCGATTGATACGTGAAGTTATTTATTAGTATGTCTATGTAGTTGGTTTATGTGCCTAAATTACTTGTGCGATTTAGCTCAATTGCTAGAGATTAGATAATATTAGCGACAATGAGAGAAGTGCCAGCTTATATTGTGACAATTTTACTTGTGATTGTAATAGAGGTAGCTGAAGAAAATATTGTAGGAATGGTGAAAAAATAGTTTGGTAGAGATTTTTCAGAAATTGGAATTGTTTGAAGTGTGTGAAAGTTATATACTAGTTCATATAAGTGAATTAGGGTTAAATATTTTGGGATCTAGGGAAACCCTTGAATGCCGAGTGTGTAAATTGGGACTGAAGAGTAGTTAGGGGTTATGGAATAGCATCAAGTTAAACTCGTTCCTTGCCTTCGTTCAAGTTACCAGGTTTAGTAGTGGCTATTATGACCATGGGTAAAGTTTATTATTTTCGTTTTTCATGGTTCTCAAAGTAAGTTTGAGTTAGTCTGCAATGATGCCTGCGTAAGTTTATCCGTCTTGTGCCCTACCTGCTTGACCTGTCTGGAAGAAAAGTACACTGTAATACTTGTTTTCTTTTGCATTAAGAACCCTGCCATAATTGATTCAACTTCAAATATCGAAAGTTGATGCAATCTAATCACCTTGATGCTATTGTGTATTATTCTATATTGGGTTTTCTCTCTGAAGTATCTTAAACTGATTACATGTAATTTAGTTGATCCTACTGAACTAGAATATATTGAATCCCGAATTTCACTGTTTTTATGTTTTGTCTTGTATGTAACTGGCTATACGTAATTAGGTTCATGCTCCCATAATAAACTGTGCTGGCTTGTTGTTCTTAACTGTGATATACATGTCTGCTGGTTTTAGTGGTTCATTTTGAATTAACACTCGTCGTACATGCTGCAGTTGGAGCTGAGGCTGATGATGATAGGATTCAACTACTACTCTCTCAAGTTGAGGGCAAAGATATCACTGAGTTGATTGCTGCCGGCAGAGAAAAATTGGCTTCAGTACCTGCTGGTGGAGGTGCTGCTTGTGCAGTTGCTGCACCTGGTGGTGGCGGTGCTGCACCTGCTGCTGAGGAGAAGAAGGAAGAAAAGAAAGTGGAAGAAAAAGAAGAGTCAGACGATGACATGGGTTTCAGTCTTTTCGATTAGAAGTCGAAGAAATCAGTTTATGAAGTATCCCCTTTTCCATTTGTTGTTCCCCTTGAGAGTGTATTTTAGGAGGTTTATTGTCTACTTACAGATTTTGCTTGAACTTAGAATTTTCAT</genome_strand>
        <mrna_strand>AAAGGTCCGCCATTCGGAGGCTCACTTTGCTTAAAATCTCCACA.........................................................................................AGAAGAGAAGATGAAGGTTATCGCCGCTTACTTGTTGGCCGTCTTGGGTGGCAACACCTCCCCTTCAGAGAAGGATTTGAAGAAAATCCTTGCATCTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAGCTGAGGCTGATGATGATAGGATTCAACTACTACTCTCTCAAGTTGAGGGCAAAGATATCACTGAGTTGATTGCTGCCGGCAGAGAAAAATTGGCTTCAGTACCTGCTGGTGGAGGTGCTGCTTGTGCAGTTGCTGCACCTGGTGGTGGCGGTGCTGCACCTGCTGCTGAGGAGAAGAAGGAAGAAAAGAAAGTGGAAGAAAAAGAAGAGTCAGACGATGACATGGGTTTCAGTCTTTTCGATTAGAAGTCGAAGAAATCAGTTTATGAAGTATCCCCTTTTCCATTTGTTGTTCCCCTTGAGAGTGTATTTTAGGAGGTTTATTGTCTACTTACAGATTTTGCTTGAACTTAGAATTTTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E299139" ref_strand="+" ref_description="SGN-E299139 [cLET-42-L17]">
      <seq>aaaggtccgccattcggaggctcactttgcttaaaatctccacaagaagagaagatgaaggttatcgccgcttacttgttggccgtcttgggtggcaacacctccccttcagagaaggatttgaagaaaatccttgcatctgttggagctgaggctgatgatgataggattcaactactactctctcaagttgagggcaaagatatcactgagttgattgctgccggcagagaaaaattggcttcagtacctgctggtggaggtgctgcttgtgcagttgctgcacctagaggtggcggtgctgcacctgctgctgaggagaataaggaagacaataaagtgcaagacaaagaacagtcatacgatgacatgggtttcagtctttgcgattagaagtcgaagaaatcagtttatgaagtatccccttttccatttgatgatccccttgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0099A03.1" temp_strand="+" temp_description="C06SLm0099A03.1  AC226730.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0099A03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="21021" stop="23150"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21321" g_stop="21364" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21365" i_stop="21453" i_length="89">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21454" g_stop="21551" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="142" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21552" i_stop="22542" i_length="991">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.511" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22543" g_stop="22850" g_length="308"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="450" r_length="308" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0099A03.1" gen_strand="+" ref_id="SGN-E299139" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>450</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0099A03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E299139" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21321" e_stop="21364"/>
          <exon e_start="21454" e_stop="21551"/>
          <exon e_start="22543" e_stop="22850"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGGTCCGCCATTCGGAGGCTCACTTTGCTTAAAATCTCCACAGTACTTTCTCCCTCTCAATTTTCTATTGTTCGTAGTTTATTTTCTGCTCTTTATCTGAATTTTTTGTTTGTTGTGTTAATTTTGATCAGAGAAGAGAAGATGAAGGTTATCGCCGCTTACTTGTTGGCCGTCTTGGGTGGCAACACCTCCCCTTCAGAGAAGGATTTGAAGAAAATCCTTGCATCTGGTACGACCTTAGAGCCCATCTTACGGTTTTGTTGCATATGGATCCGAAATGTGTTGCCATTTATATATAACTCTATAGCGATTGATACGTGAAGTTATTTATTAGTATGTCTATGTAGTTGGTTTATGTGCCTAAATTACTTGTGCGATTTAGCTCAATTGCTAGAGATTAGATAATATTAGCGACAATGAGAGAAGTGCCAGCTTATATTGTGACAATTTTACTTGTGATTGTAATAGAGGTAGCTGAAGAAAATATTGTAGGAATGGTGAAAAAATAGTTTGGTAGAGATTTTTCAGAAATTGGAATTGTTTGAAGTGTGTGAAAGTTATATACTAGTTCATATAAGTGAATTAGGGTTAAATATTTTGGGATCTAGGGAAACCCTTGAATGCCGAGTGTGTAAATTGGGACTGAAGAGTAGTTAGGGGTTATGGAATAGCATCAAGTTAAACTCGTTCCTTGCCTTCGTTCAAGTTACCAGGTTTAGTAGTGGCTATTATGACCATGGGTAAAGTTTATTATTTTCGTTTTTCATGGTTCTCAAAGTAAGTTTGAGTTAGTCTGCAATGATGCCTGCGTAAGTTTATCCGTCTTGTGCCCTACCTGCTTGACCTGTCTGGAAGAAAAGTACACTGTAATACTTGTTTTCTTTTGCATTAAGAACCCTGCCATAATTGATTCAACTTCAAATATCGAAAGTTGATGCAATCTAATCACCTTGATGCTATTGTGTATTATTCTATATTGGGTTTTCTCTCTGAAGTATCTTAAACTGATTACATGTAATTTAGTTGATCCTACTGAACTAGAATATATTGAATCCCGAATTTCACTGTTTTTATGTTTTGTCTTGTATGTAACTGGCTATACGTAATTAGGTTCATGCTCCCATAATAAACTGTGCTGGCTTGTTGTTCTTAACTGTGATATACATGTCTGCTGGTTTTAGTGGTTCATTTTGAATTAACACTCGTCGTACATGCTGCAGTTGGAGCTGAGGCTGATGATGATAGGATTCAACTACTACTCTCTCAAGTTGAGGGCAAAGATATCACTGAGTTGATTGCTGCCGGCAGAGAAAAATTGGCTTCAGTACCTGCTGGTGGAGGTGCTGCTTGTGCAGTTGCTGCACCTGGTGGTGGCGGTGCTGCACCTGCTGCTGAGGAGAAGAAGGAAGAAAAGAAAGTGGAAGAAAAAGAAGAGTCAGACGATGACATGGGTTTCAGTCTTTTCGATTAGAAGTCGAAGAAATCAGTTTATGAAGTATCCCCTTTTCCATTTGTTGTTCCCCTTGAG</genome_strand>
        <mrna_strand>AAAGGTCCGCCATTCGGAGGCTCACTTTGCTTAAAATCTCCACA.........................................................................................AGAAGAGAAGATGAAGGTTATCGCCGCTTACTTGTTGGCCGTCTTGGGTGGCAACACCTCCCCTTCAGAGAAGGATTTGAAGAAAATCCTTGCATCTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAGCTGAGGCTGATGATGATAGGATTCAACTACTACTCTCTCAAGTTGAGGGCAAAGATATCACTGAGTTGATTGCTGCCGGCAGAGAAAAATTGGCTTCAGTACCTGCTGGTGGAGGTGCTGCTTGTGCAGTTGCTGCACCTAGAGGTGGCGGTGCTGCACCTGCTGCTGAGGAGAATAAGGAAGACAATAAAGTGCAAGACAAAGAACAGTCATACGATGACATGGGTTTCAGTCTTTGCGATTAGAAGTCGAAGAAATCAGTTTATGAAGTATCCCCTTTTCCATTTGATGATCCCCTTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E337288" ref_strand="+" ref_description="SGN-E337288 [cTOE-7-P17]">
      <seq>aaaggtccgccattcggaggctcactttgcttaaaatctccacaagaagagaagatgaaggttatcgccgcttacttgttggccgtcttgggtggcaacacctccccttcagagaaggatttgaagaaaatccttgcatctgttggagctgaggctgatgatgataggattcaactactactctctcaagttgagggcaaagatatcactgagttgattgctgccggcagagaaaaattggcttcagtacctgctggtggaggtgctgcttgtgcagttgctgcacctggtggtggcggtgctgcacctgctgctgatgagaagaaggaagaaaagaaagtggaagaaaaagaagagtcagacgatgacatgggtttcagtcttttcgattagaagtcgaagaaatcagtttatgaagtatcccctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0099A03.1" temp_strand="+" temp_description="C06SLm0099A03.1  AC226730.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0099A03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="21021" stop="23127"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21321" g_stop="21364" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21365" i_stop="21453" i_length="89">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21454" g_stop="21551" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="142" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21552" i_stop="22542" i_length="991">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.511" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22543" g_stop="22827" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="427" r_length="285" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0099A03.1" gen_strand="+" ref_id="SGN-E337288" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>427</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0099A03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E337288" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21321" e_stop="21364"/>
          <exon e_start="21454" e_stop="21551"/>
          <exon e_start="22543" e_stop="22827"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGGTCCGCCATTCGGAGGCTCACTTTGCTTAAAATCTCCACAGTACTTTCTCCCTCTCAATTTTCTATTGTTCGTAGTTTATTTTCTGCTCTTTATCTGAATTTTTTGTTTGTTGTGTTAATTTTGATCAGAGAAGAGAAGATGAAGGTTATCGCCGCTTACTTGTTGGCCGTCTTGGGTGGCAACACCTCCCCTTCAGAGAAGGATTTGAAGAAAATCCTTGCATCTGGTACGACCTTAGAGCCCATCTTACGGTTTTGTTGCATATGGATCCGAAATGTGTTGCCATTTATATATAACTCTATAGCGATTGATACGTGAAGTTATTTATTAGTATGTCTATGTAGTTGGTTTATGTGCCTAAATTACTTGTGCGATTTAGCTCAATTGCTAGAGATTAGATAATATTAGCGACAATGAGAGAAGTGCCAGCTTATATTGTGACAATTTTACTTGTGATTGTAATAGAGGTAGCTGAAGAAAATATTGTAGGAATGGTGAAAAAATAGTTTGGTAGAGATTTTTCAGAAATTGGAATTGTTTGAAGTGTGTGAAAGTTATATACTAGTTCATATAAGTGAATTAGGGTTAAATATTTTGGGATCTAGGGAAACCCTTGAATGCCGAGTGTGTAAATTGGGACTGAAGAGTAGTTAGGGGTTATGGAATAGCATCAAGTTAAACTCGTTCCTTGCCTTCGTTCAAGTTACCAGGTTTAGTAGTGGCTATTATGACCATGGGTAAAGTTTATTATTTTCGTTTTTCATGGTTCTCAAAGTAAGTTTGAGTTAGTCTGCAATGATGCCTGCGTAAGTTTATCCGTCTTGTGCCCTACCTGCTTGACCTGTCTGGAAGAAAAGTACACTGTAATACTTGTTTTCTTTTGCATTAAGAACCCTGCCATAATTGATTCAACTTCAAATATCGAAAGTTGATGCAATCTAATCACCTTGATGCTATTGTGTATTATTCTATATTGGGTTTTCTCTCTGAAGTATCTTAAACTGATTACATGTAATTTAGTTGATCCTACTGAACTAGAATATATTGAATCCCGAATTTCACTGTTTTTATGTTTTGTCTTGTATGTAACTGGCTATACGTAATTAGGTTCATGCTCCCATAATAAACTGTGCTGGCTTGTTGTTCTTAACTGTGATATACATGTCTGCTGGTTTTAGTGGTTCATTTTGAATTAACACTCGTCGTACATGCTGCAGTTGGAGCTGAGGCTGATGATGATAGGATTCAACTACTACTCTCTCAAGTTGAGGGCAAAGATATCACTGAGTTGATTGCTGCCGGCAGAGAAAAATTGGCTTCAGTACCTGCTGGTGGAGGTGCTGCTTGTGCAGTTGCTGCACCTGGTGGTGGCGGTGCTGCACCTGCTGCTGAGGAGAAGAAGGAAGAAAAGAAAGTGGAAGAAAAAGAAGAGTCAGACGATGACATGGGTTTCAGTCTTTTCGATTAGAAGTCGAAGAAATCAGTTTATGAAGTATCCCCTT</genome_strand>
        <mrna_strand>AAAGGTCCGCCATTCGGAGGCTCACTTTGCTTAAAATCTCCACA.........................................................................................AGAAGAGAAGATGAAGGTTATCGCCGCTTACTTGTTGGCCGTCTTGGGTGGCAACACCTCCCCTTCAGAGAAGGATTTGAAGAAAATCCTTGCATCTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAGCTGAGGCTGATGATGATAGGATTCAACTACTACTCTCTCAAGTTGAGGGCAAAGATATCACTGAGTTGATTGCTGCCGGCAGAGAAAAATTGGCTTCAGTACCTGCTGGTGGAGGTGCTGCTTGTGCAGTTGCTGCACCTGGTGGTGGCGGTGCTGCACCTGCTGCTGATGAGAAGAAGGAAGAAAAGAAAGTGGAAGAAAAAGAAGAGTCAGACGATGACATGGGTTTCAGTCTTTTCGATTAGAAGTCGAAGAAATCAGTTTATGAAGTATCCCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E217161" ref_strand="-" ref_description="SGN-E217161 [cLEL-1-M24](-)">
      <seq>aagtttcttcatacggaggctcactttgcttaaaatctccacaagaagagaagatgaaggttatcgccgcttacttgctggccgtcttgggtggcaacacctccccttcagagaaggatttgaagaaaatccttgcatctgctggagctgaggctgatgatgataggattcaactactactctctcaagttgagggcaaagatatcactgagttgattgctgccggcagagaaaaattggcttcagtacctgctggtggaggtgctgcttgtgcagatgctgcacctggtggtggcggagctgcacctgctgctgaggagaagaaggaagaaaagaaagtggaagaaaaagaagagtcagacgatgacatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0099A03.1" temp_strand="+" temp_description="C06SLm0099A03.1  AC226730.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0099A03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="21022" stop="23073"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21322" g_stop="21364" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="0.884"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21365" i_stop="21453" i_length="89">
            <donor d_prob="0.997" d_score="0.88"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21454" g_stop="21551" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="141" r_length="98" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21552" i_stop="22542" i_length="991">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.511" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22543" g_stop="22773" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="372" r_length="231" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0099A03.1" gen_strand="+" ref_id="SGN-E217161" ref_strand="-">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>372</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0099A03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E217161" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="21322" e_stop="21364"/>
          <exon e_start="21454" e_stop="21551"/>
          <exon e_start="22543" e_stop="22773"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGTCCGCCATTCGGAGGCTCACTTTGCTTAAAATCTCCACAGTACTTTCTCCCTCTCAATTTTCTATTGTTCGTAGTTTATTTTCTGCTCTTTATCTGAATTTTTTGTTTGTTGTGTTAATTTTGATCAGAGAAGAGAAGATGAAGGTTATCGCCGCTTACTTGTTGGCCGTCTTGGGTGGCAACACCTCCCCTTCAGAGAAGGATTTGAAGAAAATCCTTGCATCTGGTACGACCTTAGAGCCCATCTTACGGTTTTGTTGCATATGGATCCGAAATGTGTTGCCATTTATATATAACTCTATAGCGATTGATACGTGAAGTTATTTATTAGTATGTCTATGTAGTTGGTTTATGTGCCTAAATTACTTGTGCGATTTAGCTCAATTGCTAGAGATTAGATAATATTAGCGACAATGAGAGAAGTGCCAGCTTATATTGTGACAATTTTACTTGTGATTGTAATAGAGGTAGCTGAAGAAAATATTGTAGGAATGGTGAAAAAATAGTTTGGTAGAGATTTTTCAGAAATTGGAATTGTTTGAAGTGTGTGAAAGTTATATACTAGTTCATATAAGTGAATTAGGGTTAAATATTTTGGGATCTAGGGAAACCCTTGAATGCCGAGTGTGTAAATTGGGACTGAAGAGTAGTTAGGGGTTATGGAATAGCATCAAGTTAAACTCGTTCCTTGCCTTCGTTCAAGTTACCAGGTTTAGTAGTGGCTATTATGACCATGGGTAAAGTTTATTATTTTCGTTTTTCATGGTTCTCAAAGTAAGTTTGAGTTAGTCTGCAATGATGCCTGCGTAAGTTTATCCGTCTTGTGCCCTACCTGCTTGACCTGTCTGGAAGAAAAGTACACTGTAATACTTGTTTTCTTTTGCATTAAGAACCCTGCCATAATTGATTCAACTTCAAATATCGAAAGTTGATGCAATCTAATCACCTTGATGCTATTGTGTATTATTCTATATTGGGTTTTCTCTCTGAAGTATCTTAAACTGATTACATGTAATTTAGTTGATCCTACTGAACTAGAATATATTGAATCCCGAATTTCACTGTTTTTATGTTTTGTCTTGTATGTAACTGGCTATACGTAATTAGGTTCATGCTCCCATAATAAACTGTGCTGGCTTGTTGTTCTTAACTGTGATATACATGTCTGCTGGTTTTAGTGGTTCATTTTGAATTAACACTCGTCGTACATGCTGCAGTTGGAGCTGAGGCTGATGATGATAGGATTCAACTACTACTCTCTCAAGTTGAGGGCAAAGATATCACTGAGTTGATTGCTGCCGGCAGAGAAAAATTGGCTTCAGTACCTGCTGGTGGAGGTGCTGCTTGTGCAGTTGCTGCACCTGGTGGTGGCGGTGCTGCACCTGCTGCTGAGGAGAAGAAGGAAGAAAAGAAAGTGGAAGAAAAAGAAGAGTCAGACGATGACATGG</genome_strand>
        <mrna_strand>AAGTTTCTTCATACGGAGGCTCACTTTGCTTAAAATCTCCACA.........................................................................................AGAAGAGAAGATGAAGGTTATCGCCGCTTACTTGCTGGCCGTCTTGGGTGGCAACACCTCCCCTTCAGAGAAGGATTTGAAGAAAATCCTTGCATCTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGAGCTGAGGCTGATGATGATAGGATTCAACTACTACTCTCTCAAGTTGAGGGCAAAGATATCACTGAGTTGATTGCTGCCGGCAGAGAAAAATTGGCTTCAGTACCTGCTGGTGGAGGTGCTGCTTGTGCAGATGCTGCACCTGGTGGTGGCGGAGCTGCACCTGCTGCTGAGGAGAAGAAGGAAGAAAAGAAAGTGGAAGAAAAAGAAGAGTCAGACGATGACATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E299241" ref_strand="+" ref_description="SGN-E299241 [cLET-43-A16]">
      <seq>tccgccattcggaggctcactttgcttaaaatctccacaagaagagaagatgaaggttatcgccgcttacttgttggccgtcttgggtggcaacacctccccttcagagaaggatttgaagaaaatccttgcatctgttggagctgaggctgatgatgataggattcaactactactctctcaagttgagggcaaagatatcactgagttgattgctgccggcagagaaaaattggcttcagtacctgctggtggaggtgctgcttgtgcagttgctgcacctggtggtggcggtgctgcacctgctgctgaggagaagaaggaagaaaagaaagtggaagaaaaagaagagtcagacgatgacatgggtttcagtcttttcgattagaagtcgaagaaatcagtttatgaagtatccccttttccatttgttgttccccttgagagtgtattttaagaggtttattgtctacttacagattttgcttgaacttagaattttcatggaaaacatttgcgaacagttgaaattataatatgtatttcaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0099A03.1" temp_strand="+" temp_description="C06SLm0099A03.1  AC226730.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0099A03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="21026" stop="23254"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21326" g_stop="21364" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21365" i_stop="21453" i_length="89">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21454" g_stop="21551" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="137" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21552" i_stop="22542" i_length="991">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.511" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22543" g_stop="22960" g_length="418"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="555" r_length="418" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0099A03.1" gen_strand="+" ref_id="SGN-E299241" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0099A03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E299241" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21326" e_stop="21364"/>
          <exon e_start="21454" e_stop="21551"/>
          <exon e_start="22543" e_stop="22960"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCGCCATTCGGAGGCTCACTTTGCTTAAAATCTCCACAGTACTTTCTCCCTCTCAATTTTCTATTGTTCGTAGTTTATTTTCTGCTCTTTATCTGAATTTTTTGTTTGTTGTGTTAATTTTGATCAGAGAAGAGAAGATGAAGGTTATCGCCGCTTACTTGTTGGCCGTCTTGGGTGGCAACACCTCCCCTTCAGAGAAGGATTTGAAGAAAATCCTTGCATCTGGTACGACCTTAGAGCCCATCTTACGGTTTTGTTGCATATGGATCCGAAATGTGTTGCCATTTATATATAACTCTATAGCGATTGATACGTGAAGTTATTTATTAGTATGTCTATGTAGTTGGTTTATGTGCCTAAATTACTTGTGCGATTTAGCTCAATTGCTAGAGATTAGATAATATTAGCGACAATGAGAGAAGTGCCAGCTTATATTGTGACAATTTTACTTGTGATTGTAATAGAGGTAGCTGAAGAAAATATTGTAGGAATGGTGAAAAAATAGTTTGGTAGAGATTTTTCAGAAATTGGAATTGTTTGAAGTGTGTGAAAGTTATATACTAGTTCATATAAGTGAATTAGGGTTAAATATTTTGGGATCTAGGGAAACCCTTGAATGCCGAGTGTGTAAATTGGGACTGAAGAGTAGTTAGGGGTTATGGAATAGCATCAAGTTAAACTCGTTCCTTGCCTTCGTTCAAGTTACCAGGTTTAGTAGTGGCTATTATGACCATGGGTAAAGTTTATTATTTTCGTTTTTCATGGTTCTCAAAGTAAGTTTGAGTTAGTCTGCAATGATGCCTGCGTAAGTTTATCCGTCTTGTGCCCTACCTGCTTGACCTGTCTGGAAGAAAAGTACACTGTAATACTTGTTTTCTTTTGCATTAAGAACCCTGCCATAATTGATTCAACTTCAAATATCGAAAGTTGATGCAATCTAATCACCTTGATGCTATTGTGTATTATTCTATATTGGGTTTTCTCTCTGAAGTATCTTAAACTGATTACATGTAATTTAGTTGATCCTACTGAACTAGAATATATTGAATCCCGAATTTCACTGTTTTTATGTTTTGTCTTGTATGTAACTGGCTATACGTAATTAGGTTCATGCTCCCATAATAAACTGTGCTGGCTTGTTGTTCTTAACTGTGATATACATGTCTGCTGGTTTTAGTGGTTCATTTTGAATTAACACTCGTCGTACATGCTGCAGTTGGAGCTGAGGCTGATGATGATAGGATTCAACTACTACTCTCTCAAGTTGAGGGCAAAGATATCACTGAGTTGATTGCTGCCGGCAGAGAAAAATTGGCTTCAGTACCTGCTGGTGGAGGTGCTGCTTGTGCAGTTGCTGCACCTGGTGGTGGCGGTGCTGCACCTGCTGCTGAGGAGAAGAAGGAAGAAAAGAAAGTGGAAGAAAAAGAAGAGTCAGACGATGACATGGGTTTCAGTCTTTTCGATTAGAAGTCGAAGAAATCAGTTTATGAAGTATCCCCTTTTCCATTTGTTGTTCCCCTTGAGAGTGTATTTTAGGAGGTTTATTGTCTACTTACAGATTTTGCTTGAACTTAGAATTTTCATGGAAAACATTTGCAAACAGTTGAAATTATAATATGTATTTCAAATGTTCA</genome_strand>
        <mrna_strand>TCCGCCATTCGGAGGCTCACTTTGCTTAAAATCTCCACA.........................................................................................AGAAGAGAAGATGAAGGTTATCGCCGCTTACTTGTTGGCCGTCTTGGGTGGCAACACCTCCCCTTCAGAGAAGGATTTGAAGAAAATCCTTGCATCTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAGCTGAGGCTGATGATGATAGGATTCAACTACTACTCTCTCAAGTTGAGGGCAAAGATATCACTGAGTTGATTGCTGCCGGCAGAGAAAAATTGGCTTCAGTACCTGCTGGTGGAGGTGCTGCTTGTGCAGTTGCTGCACCTGGTGGTGGCGGTGCTGCACCTGCTGCTGAGGAGAAGAAGGAAGAAAAGAAAGTGGAAGAAAAAGAAGAGTCAGACGATGACATGGGTTTCAGTCTTTTCGATTAGAAGTCGAAGAAATCAGTTTATGAAGTATCCCCTTTTCCATTTGTTGTTCCCCTTGAGAGTGTATTTTAAGAGGTTTATTGTCTACTTACAGATTTTGCTTGAACTTAGAATTTTCATGGAAAACATTTGCGAACAGTTGAAATTATAATATGTATTTCAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E298611" ref_strand="+" ref_description="SGN-E298611 [cLET-44-C15]">
      <seq>tccgccattcggaggctcactttgcttaaaatctccacaagaagagaagatgaaggttatcgccgcttacttgttggccgtcttgggtggcaacacctccccttcagagaaggatttgaagaaaatccttgcatctgttggagctgaggctgatgatgataggattcaactactactctctcaagttgagggcaaagatatcactgagttgattgctgccggcagagaaaaattggcttcaatacctgctggtggaggtgctgcttgtgcagttgctgcacctggtggtggcggtgctgcacctgctgctgaggagaacaaggaagaaaagaaagtggaagaaaaagaagagtcctacgatgacatgggtttcagtcttttcgattaaaagtcgaagaaatcagtttatgaagtatccccttttccatttgatgttccccttgagagtgtattttaagaggtttattgtctacttacagattttgcttgaacttagaattgtcatggaaaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0099A03.1" temp_strand="+" temp_description="C06SLm0099A03.1  AC226730.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0099A03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="21026" stop="23218"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21326" g_stop="21364" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21365" i_stop="21453" i_length="89">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21454" g_stop="21551" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="137" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21552" i_stop="22542" i_length="991">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.511" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22543" g_stop="22918" g_length="376"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="513" r_length="376" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0099A03.1" gen_strand="+" ref_id="SGN-E298611" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>513</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0099A03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E298611" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21326" e_stop="21364"/>
          <exon e_start="21454" e_stop="21551"/>
          <exon e_start="22543" e_stop="22918"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCGCCATTCGGAGGCTCACTTTGCTTAAAATCTCCACAGTACTTTCTCCCTCTCAATTTTCTATTGTTCGTAGTTTATTTTCTGCTCTTTATCTGAATTTTTTGTTTGTTGTGTTAATTTTGATCAGAGAAGAGAAGATGAAGGTTATCGCCGCTTACTTGTTGGCCGTCTTGGGTGGCAACACCTCCCCTTCAGAGAAGGATTTGAAGAAAATCCTTGCATCTGGTACGACCTTAGAGCCCATCTTACGGTTTTGTTGCATATGGATCCGAAATGTGTTGCCATTTATATATAACTCTATAGCGATTGATACGTGAAGTTATTTATTAGTATGTCTATGTAGTTGGTTTATGTGCCTAAATTACTTGTGCGATTTAGCTCAATTGCTAGAGATTAGATAATATTAGCGACAATGAGAGAAGTGCCAGCTTATATTGTGACAATTTTACTTGTGATTGTAATAGAGGTAGCTGAAGAAAATATTGTAGGAATGGTGAAAAAATAGTTTGGTAGAGATTTTTCAGAAATTGGAATTGTTTGAAGTGTGTGAAAGTTATATACTAGTTCATATAAGTGAATTAGGGTTAAATATTTTGGGATCTAGGGAAACCCTTGAATGCCGAGTGTGTAAATTGGGACTGAAGAGTAGTTAGGGGTTATGGAATAGCATCAAGTTAAACTCGTTCCTTGCCTTCGTTCAAGTTACCAGGTTTAGTAGTGGCTATTATGACCATGGGTAAAGTTTATTATTTTCGTTTTTCATGGTTCTCAAAGTAAGTTTGAGTTAGTCTGCAATGATGCCTGCGTAAGTTTATCCGTCTTGTGCCCTACCTGCTTGACCTGTCTGGAAGAAAAGTACACTGTAATACTTGTTTTCTTTTGCATTAAGAACCCTGCCATAATTGATTCAACTTCAAATATCGAAAGTTGATGCAATCTAATCACCTTGATGCTATTGTGTATTATTCTATATTGGGTTTTCTCTCTGAAGTATCTTAAACTGATTACATGTAATTTAGTTGATCCTACTGAACTAGAATATATTGAATCCCGAATTTCACTGTTTTTATGTTTTGTCTTGTATGTAACTGGCTATACGTAATTAGGTTCATGCTCCCATAATAAACTGTGCTGGCTTGTTGTTCTTAACTGTGATATACATGTCTGCTGGTTTTAGTGGTTCATTTTGAATTAACACTCGTCGTACATGCTGCAGTTGGAGCTGAGGCTGATGATGATAGGATTCAACTACTACTCTCTCAAGTTGAGGGCAAAGATATCACTGAGTTGATTGCTGCCGGCAGAGAAAAATTGGCTTCAGTACCTGCTGGTGGAGGTGCTGCTTGTGCAGTTGCTGCACCTGGTGGTGGCGGTGCTGCACCTGCTGCTGAGGAGAAGAAGGAAGAAAAGAAAGTGGAAGAAAAAGAAGAGTCAGACGATGACATGGGTTTCAGTCTTTTCGATTAGAAGTCGAAGAAATCAGTTTATGAAGTATCCCCTTTTCCATTTGTTGTTCCCCTTGAGAGTGTATTTTAGGAGGTTTATTGTCTACTTACAGATTTTGCTTGAACTTAGAATTTTCATGGAAAACA</genome_strand>
        <mrna_strand>TCCGCCATTCGGAGGCTCACTTTGCTTAAAATCTCCACA.........................................................................................AGAAGAGAAGATGAAGGTTATCGCCGCTTACTTGTTGGCCGTCTTGGGTGGCAACACCTCCCCTTCAGAGAAGGATTTGAAGAAAATCCTTGCATCTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAGCTGAGGCTGATGATGATAGGATTCAACTACTACTCTCTCAAGTTGAGGGCAAAGATATCACTGAGTTGATTGCTGCCGGCAGAGAAAAATTGGCTTCAATACCTGCTGGTGGAGGTGCTGCTTGTGCAGTTGCTGCACCTGGTGGTGGCGGTGCTGCACCTGCTGCTGAGGAGAACAAGGAAGAAAAGAAAGTGGAAGAAAAAGAAGAGTCCTACGATGACATGGGTTTCAGTCTTTTCGATTAAAAGTCGAAGAAATCAGTTTATGAAGTATCCCCTTTTCCATTTGATGTTCCCCTTGAGAGTGTATTTTAAGAGGTTTATTGTCTACTTACAGATTTTGCTTGAACTTAGAATTGTCATGGAAAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E719458" ref_strand="+" ref_description="SGN-E719458 [FC07DG04]">
      <seq>ccgccattcggaggctcactttgcttaaaatctccacaagaagagaagatgaaggttatcgccgcttacttgttggccgtcttgggtggcaacacctccccttcagagaaggatttgaagaaaatccttgcatctgttggagctgaggctgatgatgataggattcaactactactctctcaagttgagggcaaagatatcactgagttgattgctgccggcagagaaaaattggcttcagtacctgctggtggaggtgctgcttgtgcagttgctgcacctggtggtggcggtgctgcacctgctgctgaggagaagaaggaagaaaagaaagtggaagaaaaagaagagtcagacgatgacatgggtttcagtcttttcgattagaagtcgaataaatcagtttatgaagtatccccttttccatttgttgttccccttgagagtgtattttaggaggtttattgtctacttacagattttgcttgaacttagaattttcttggaaaacatttgcaaacagttgaggttagtttatgcatttcaaatgttcagcttggtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0099A03.1" temp_strand="+" temp_description="C06SLm0099A03.1  AC226730.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0099A03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="21027" stop="23268"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21327" g_stop="21364" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21365" i_stop="21453" i_length="89">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21454" g_stop="21551" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="136" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21552" i_stop="22542" i_length="991">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.511" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22543" g_stop="22968" g_length="426"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="562" r_length="426" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0099A03.1" gen_strand="+" ref_id="SGN-E719458" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0099A03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E719458" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21327" e_stop="21364"/>
          <exon e_start="21454" e_stop="21551"/>
          <exon e_start="22543" e_stop="22968"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGCCATTCGGAGGCTCACTTTGCTTAAAATCTCCACAGTACTTTCTCCCTCTCAATTTTCTATTGTTCGTAGTTTATTTTCTGCTCTTTATCTGAATTTTTTGTTTGTTGTGTTAATTTTGATCAGAGAAGAGAAGATGAAGGTTATCGCCGCTTACTTGTTGGCCGTCTTGGGTGGCAACACCTCCCCTTCAGAGAAGGATTTGAAGAAAATCCTTGCATCTGGTACGACCTTAGAGCCCATCTTACGGTTTTGTTGCATATGGATCCGAAATGTGTTGCCATTTATATATAACTCTATAGCGATTGATACGTGAAGTTATTTATTAGTATGTCTATGTAGTTGGTTTATGTGCCTAAATTACTTGTGCGATTTAGCTCAATTGCTAGAGATTAGATAATATTAGCGACAATGAGAGAAGTGCCAGCTTATATTGTGACAATTTTACTTGTGATTGTAATAGAGGTAGCTGAAGAAAATATTGTAGGAATGGTGAAAAAATAGTTTGGTAGAGATTTTTCAGAAATTGGAATTGTTTGAAGTGTGTGAAAGTTATATACTAGTTCATATAAGTGAATTAGGGTTAAATATTTTGGGATCTAGGGAAACCCTTGAATGCCGAGTGTGTAAATTGGGACTGAAGAGTAGTTAGGGGTTATGGAATAGCATCAAGTTAAACTCGTTCCTTGCCTTCGTTCAAGTTACCAGGTTTAGTAGTGGCTATTATGACCATGGGTAAAGTTTATTATTTTCGTTTTTCATGGTTCTCAAAGTAAGTTTGAGTTAGTCTGCAATGATGCCTGCGTAAGTTTATCCGTCTTGTGCCCTACCTGCTTGACCTGTCTGGAAGAAAAGTACACTGTAATACTTGTTTTCTTTTGCATTAAGAACCCTGCCATAATTGATTCAACTTCAAATATCGAAAGTTGATGCAATCTAATCACCTTGATGCTATTGTGTATTATTCTATATTGGGTTTTCTCTCTGAAGTATCTTAAACTGATTACATGTAATTTAGTTGATCCTACTGAACTAGAATATATTGAATCCCGAATTTCACTGTTTTTATGTTTTGTCTTGTATGTAACTGGCTATACGTAATTAGGTTCATGCTCCCATAATAAACTGTGCTGGCTTGTTGTTCTTAACTGTGATATACATGTCTGCTGGTTTTAGTGGTTCATTTTGAATTAACACTCGTCGTACATGCTGCAGTTGGAGCTGAGGCTGATGATGATAGGATTCAACTACTACTCTCTCAAGTTGAGGGCAAAGATATCACTGAGTTGATTGCTGCCGGCAGAGAAAAATTGGCTTCAGTACCTGCTGGTGGAGGTGCTGCTTGTGCAGTTGCTGCACCTGGTGGTGGCGGTGCTGCACCTGCTGCTGAGGAGAAGAAGGAAGAAAAGAAAGTGGAAGAAAAAGAAGAGTCAGACGATGACATGGGTTTCAGTCTTTTCGATTAGAAGTCGAAGAAATCAGTTTATGAAGTATCCCCTTTTCCATTTGTTGTTCCCCTTGAGAGTGTATTTTAGGAGGTTTATTGTCTACTTACAGATTTTGCTTGAACTTAGAATTTTCATGGAAAACATTTGCAAACAGTTGAAATTATAATATGTATTTCAAATGTTCAGCTTGGTT</genome_strand>
        <mrna_strand>CCGCCATTCGGAGGCTCACTTTGCTTAAAATCTCCACA.........................................................................................AGAAGAGAAGATGAAGGTTATCGCCGCTTACTTGTTGGCCGTCTTGGGTGGCAACACCTCCCCTTCAGAGAAGGATTTGAAGAAAATCCTTGCATCTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAGCTGAGGCTGATGATGATAGGATTCAACTACTACTCTCTCAAGTTGAGGGCAAAGATATCACTGAGTTGATTGCTGCCGGCAGAGAAAAATTGGCTTCAGTACCTGCTGGTGGAGGTGCTGCTTGTGCAGTTGCTGCACCTGGTGGTGGCGGTGCTGCACCTGCTGCTGAGGAGAAGAAGGAAGAAAAGAAAGTGGAAGAAAAAGAAGAGTCAGACGATGACATGGGTTTCAGTCTTTTCGATTAGAAGTCGAATAAATCAGTTTATGAAGTATCCCCTTTTCCATTTGTTGTTCCCCTTGAGAGTGTATTTTAGGAGGTTTATTGTCTACTTACAGATTTTGCTTGAACTTAGAATTTTCTTGGAAAACATTTGCAAACAGTTGAGGTTAGTTTATGCATTTCAAATGTTCAGCTTGGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E338599" ref_strand="+" ref_description="SGN-E338599 [cTOE-15-I22]">
      <seq>gccattcggaggctcactttgcttaaaatctccacaagaagagaagatgaaggttatcgccgcttacttgttggccgtcttgggtggcaacacctccccttcagagaaggatttgaagaaaatccttgcatctgttggagctgaggctgatgatgataggattcaactactactctctcaagttgagggcaaagatatcactgagttgattgctgccggcagagaaaaattggcttcagtacctgctggtggaggtgctgcttgtgcagttgctgcacctggtggtggcggtgctgcacctgctgctgaggagaagaaggaagaaaagaaagtggaagaaaaagaagagtcagacgatgacatgggtttcagtcttttcgattagaagtcgaagaaatcagtttatgaagtatccccttttccatttgttgttccccttgagagtgtattttaggaggtttattgtctacttacagattttgcttgaacttagaattttcatggaaaacatttgcaaacagttgaaattataatatgtatttcaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0099A03.1" temp_strand="+" temp_description="C06SLm0099A03.1  AC226730.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0099A03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="21029" stop="23255"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21329" g_stop="21364" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21365" i_stop="21453" i_length="89">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21454" g_stop="21551" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="134" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21552" i_stop="22542" i_length="991">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.511" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22543" g_stop="22955" g_length="413"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="547" r_length="413" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0099A03.1" gen_strand="+" ref_id="SGN-E338599" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0099A03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E338599" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21329" e_stop="21364"/>
          <exon e_start="21454" e_stop="21551"/>
          <exon e_start="22543" e_stop="22955"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCATTCGGAGGCTCACTTTGCTTAAAATCTCCACAGTACTTTCTCCCTCTCAATTTTCTATTGTTCGTAGTTTATTTTCTGCTCTTTATCTGAATTTTTTGTTTGTTGTGTTAATTTTGATCAGAGAAGAGAAGATGAAGGTTATCGCCGCTTACTTGTTGGCCGTCTTGGGTGGCAACACCTCCCCTTCAGAGAAGGATTTGAAGAAAATCCTTGCATCTGGTACGACCTTAGAGCCCATCTTACGGTTTTGTTGCATATGGATCCGAAATGTGTTGCCATTTATATATAACTCTATAGCGATTGATACGTGAAGTTATTTATTAGTATGTCTATGTAGTTGGTTTATGTGCCTAAATTACTTGTGCGATTTAGCTCAATTGCTAGAGATTAGATAATATTAGCGACAATGAGAGAAGTGCCAGCTTATATTGTGACAATTTTACTTGTGATTGTAATAGAGGTAGCTGAAGAAAATATTGTAGGAATGGTGAAAAAATAGTTTGGTAGAGATTTTTCAGAAATTGGAATTGTTTGAAGTGTGTGAAAGTTATATACTAGTTCATATAAGTGAATTAGGGTTAAATATTTTGGGATCTAGGGAAACCCTTGAATGCCGAGTGTGTAAATTGGGACTGAAGAGTAGTTAGGGGTTATGGAATAGCATCAAGTTAAACTCGTTCCTTGCCTTCGTTCAAGTTACCAGGTTTAGTAGTGGCTATTATGACCATGGGTAAAGTTTATTATTTTCGTTTTTCATGGTTCTCAAAGTAAGTTTGAGTTAGTCTGCAATGATGCCTGCGTAAGTTTATCCGTCTTGTGCCCTACCTGCTTGACCTGTCTGGAAGAAAAGTACACTGTAATACTTGTTTTCTTTTGCATTAAGAACCCTGCCATAATTGATTCAACTTCAAATATCGAAAGTTGATGCAATCTAATCACCTTGATGCTATTGTGTATTATTCTATATTGGGTTTTCTCTCTGAAGTATCTTAAACTGATTACATGTAATTTAGTTGATCCTACTGAACTAGAATATATTGAATCCCGAATTTCACTGTTTTTATGTTTTGTCTTGTATGTAACTGGCTATACGTAATTAGGTTCATGCTCCCATAATAAACTGTGCTGGCTTGTTGTTCTTAACTGTGATATACATGTCTGCTGGTTTTAGTGGTTCATTTTGAATTAACACTCGTCGTACATGCTGCAGTTGGAGCTGAGGCTGATGATGATAGGATTCAACTACTACTCTCTCAAGTTGAGGGCAAAGATATCACTGAGTTGATTGCTGCCGGCAGAGAAAAATTGGCTTCAGTACCTGCTGGTGGAGGTGCTGCTTGTGCAGTTGCTGCACCTGGTGGTGGCGGTGCTGCACCTGCTGCTGAGGAGAAGAAGGAAGAAAAGAAAGTGGAAGAAAAAGAAGAGTCAGACGATGACATGGGTTTCAGTCTTTTCGATTAGAAGTCGAAGAAATCAGTTTATGAAGTATCCCCTTTTCCATTTGTTGTTCCCCTTGAGAGTGTATTTTAGGAGGTTTATTGTCTACTTACAGATTTTGCTTGAACTTAGAATTTTCATGGAAAACATTTGCAAACAGTTGAAATTATAATATGTATTTCAAAT</genome_strand>
        <mrna_strand>GCCATTCGGAGGCTCACTTTGCTTAAAATCTCCACA.........................................................................................AGAAGAGAAGATGAAGGTTATCGCCGCTTACTTGTTGGCCGTCTTGGGTGGCAACACCTCCCCTTCAGAGAAGGATTTGAAGAAAATCCTTGCATCTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAGCTGAGGCTGATGATGATAGGATTCAACTACTACTCTCTCAAGTTGAGGGCAAAGATATCACTGAGTTGATTGCTGCCGGCAGAGAAAAATTGGCTTCAGTACCTGCTGGTGGAGGTGCTGCTTGTGCAGTTGCTGCACCTGGTGGTGGCGGTGCTGCACCTGCTGCTGAGGAGAAGAAGGAAGAAAAGAAAGTGGAAGAAAAAGAAGAGTCAGACGATGACATGGGTTTCAGTCTTTTCGATTAGAAGTCGAAGAAATCAGTTTATGAAGTATCCCCTTTTCCATTTGTTGTTCCCCTTGAGAGTGTATTTTAGGAGGTTTATTGTCTACTTACAGATTTTGCTTGAACTTAGAATTTTCATGGAAAACATTTGCAAACAGTTGAAATTATAATATGTATTTCAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E233821" ref_strand="+" ref_description="SGN-E233821 [cLEL-8-B3](-)">
      <seq>gccattcggaggctcactttgcttaaaatccccacaagaaaagaagatgaaggttatccccgcttacttgttggccgtcttgggtggcaacacctccccttcagagaaggatttgaagaaaatccttgcatctgttggagctgaggctgattatgataggattcaactactactctctcaagttgagggcaaagatatccctgagttgattgctgccggcagagaaaaattggcttcagtacctgctggtgaaggtgctgcttgtgcagttgctgcacctggtggtggcggtgctgcacctgctgctgagggaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0099A03.1" temp_strand="+" temp_description="C06SLm0099A03.1  AC226730.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0099A03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="21029" stop="23039"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21329" g_stop="21364" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21365" i_stop="21453" i_length="89">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.993" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21454" g_stop="21551" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="134" r_length="98" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21552" i_stop="22542" i_length="991">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.511" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22543" g_stop="22754" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="346" r_length="212" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0099A03.1" gen_strand="+" ref_id="SGN-E233821" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>346</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0099A03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E233821" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21329" e_stop="21364"/>
          <exon e_start="21454" e_stop="21551"/>
          <exon e_start="22543" e_stop="22754"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCATTCGGAGGCTCACTTTGCTTAAAATCTCCACAGTACTTTCTCCCTCTCAATTTTCTATTGTTCGTAGTTTATTTTCTGCTCTTTATCTGAATTTTTTGTTTGTTGTGTTAATTTTGATCAGAGAAGAGAAGATGAAGGTTATCGCCGCTTACTTGTTGGCCGTCTTGGGTGGCAACACCTCCCCTTCAGAGAAGGATTTGAAGAAAATCCTTGCATCTGGTACGACCTTAGAGCCCATCTTACGGTTTTGTTGCATATGGATCCGAAATGTGTTGCCATTTATATATAACTCTATAGCGATTGATACGTGAAGTTATTTATTAGTATGTCTATGTAGTTGGTTTATGTGCCTAAATTACTTGTGCGATTTAGCTCAATTGCTAGAGATTAGATAATATTAGCGACAATGAGAGAAGTGCCAGCTTATATTGTGACAATTTTACTTGTGATTGTAATAGAGGTAGCTGAAGAAAATATTGTAGGAATGGTGAAAAAATAGTTTGGTAGAGATTTTTCAGAAATTGGAATTGTTTGAAGTGTGTGAAAGTTATATACTAGTTCATATAAGTGAATTAGGGTTAAATATTTTGGGATCTAGGGAAACCCTTGAATGCCGAGTGTGTAAATTGGGACTGAAGAGTAGTTAGGGGTTATGGAATAGCATCAAGTTAAACTCGTTCCTTGCCTTCGTTCAAGTTACCAGGTTTAGTAGTGGCTATTATGACCATGGGTAAAGTTTATTATTTTCGTTTTTCATGGTTCTCAAAGTAAGTTTGAGTTAGTCTGCAATGATGCCTGCGTAAGTTTATCCGTCTTGTGCCCTACCTGCTTGACCTGTCTGGAAGAAAAGTACACTGTAATACTTGTTTTCTTTTGCATTAAGAACCCTGCCATAATTGATTCAACTTCAAATATCGAAAGTTGATGCAATCTAATCACCTTGATGCTATTGTGTATTATTCTATATTGGGTTTTCTCTCTGAAGTATCTTAAACTGATTACATGTAATTTAGTTGATCCTACTGAACTAGAATATATTGAATCCCGAATTTCACTGTTTTTATGTTTTGTCTTGTATGTAACTGGCTATACGTAATTAGGTTCATGCTCCCATAATAAACTGTGCTGGCTTGTTGTTCTTAACTGTGATATACATGTCTGCTGGTTTTAGTGGTTCATTTTGAATTAACACTCGTCGTACATGCTGCAGTTGGAGCTGAGGCTGATGATGATAGGATTCAACTACTACTCTCTCAAGTTGAGGGCAAAGATATCACTGAGTTGATTGCTGCCGGCAGAGAAAAATTGGCTTCAGTACCTGCTGGTGGAGGTGCTGCTTGTGCAGTTGCTGCACCTGGTGGTGGCGGTGCTGCACCTGCTGCTGAGGAGAAGAAGGAAGAAAAGAAAGTGGAAGAAAAAGAA</genome_strand>
        <mrna_strand>GCCATTCGGAGGCTCACTTTGCTTAAAATCCCCACA.........................................................................................AGAAAAGAAGATGAAGGTTATCCCCGCTTACTTGTTGGCCGTCTTGGGTGGCAACACCTCCCCTTCAGAGAAGGATTTGAAGAAAATCCTTGCATCTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAGCTGAGGCTGATTATGATAGGATTCAACTACTACTCTCTCAAGTTGAGGGCAAAGATATCCCTGAGTTGATTGCTGCCGGCAGAGAAAAATTGGCTTCAGTACCTGCTGGTGAAGGTGCTGCTTGTGCAGTTGCTGCACCTGGTGGTGGCGGTGCTGCACCTGCTGCTGAGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E737294" ref_strand="+" ref_description="SGN-E737294 [LC09AG04]">
      <seq>gccattcggaggctcactttgcttaaaatctccacaagaagagaagatgaaggttatcgccgcttacttgttggccgtcttgggtggcaacacctccccttcagagaaggatttgaagaaaatccttgcatctgttggagctgaggctgatgatgataggattcaactactactctctcaagttgagggcaaagatatcactgagttgattgctgccggcagagaaaaattggcttcagtacctgctggtggaggtgctgcttgtgcagttgctgcacctggtggtggcggtgctgcacctgctgctgaggagaagaaggaagaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0099A03.1" temp_strand="+" temp_description="C06SLm0099A03.1  AC226730.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0099A03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="21029" stop="23035"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21329" g_stop="21364" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21365" i_stop="21453" i_length="89">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21454" g_stop="21551" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="134" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21552" i_stop="22542" i_length="991">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.511" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22543" g_stop="22735" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="327" r_length="193" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0099A03.1" gen_strand="+" ref_id="SGN-E737294" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>327</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0099A03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E737294" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21329" e_stop="21364"/>
          <exon e_start="21454" e_stop="21551"/>
          <exon e_start="22543" e_stop="22735"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCATTCGGAGGCTCACTTTGCTTAAAATCTCCACAGTACTTTCTCCCTCTCAATTTTCTATTGTTCGTAGTTTATTTTCTGCTCTTTATCTGAATTTTTTGTTTGTTGTGTTAATTTTGATCAGAGAAGAGAAGATGAAGGTTATCGCCGCTTACTTGTTGGCCGTCTTGGGTGGCAACACCTCCCCTTCAGAGAAGGATTTGAAGAAAATCCTTGCATCTGGTACGACCTTAGAGCCCATCTTACGGTTTTGTTGCATATGGATCCGAAATGTGTTGCCATTTATATATAACTCTATAGCGATTGATACGTGAAGTTATTTATTAGTATGTCTATGTAGTTGGTTTATGTGCCTAAATTACTTGTGCGATTTAGCTCAATTGCTAGAGATTAGATAATATTAGCGACAATGAGAGAAGTGCCAGCTTATATTGTGACAATTTTACTTGTGATTGTAATAGAGGTAGCTGAAGAAAATATTGTAGGAATGGTGAAAAAATAGTTTGGTAGAGATTTTTCAGAAATTGGAATTGTTTGAAGTGTGTGAAAGTTATATACTAGTTCATATAAGTGAATTAGGGTTAAATATTTTGGGATCTAGGGAAACCCTTGAATGCCGAGTGTGTAAATTGGGACTGAAGAGTAGTTAGGGGTTATGGAATAGCATCAAGTTAAACTCGTTCCTTGCCTTCGTTCAAGTTACCAGGTTTAGTAGTGGCTATTATGACCATGGGTAAAGTTTATTATTTTCGTTTTTCATGGTTCTCAAAGTAAGTTTGAGTTAGTCTGCAATGATGCCTGCGTAAGTTTATCCGTCTTGTGCCCTACCTGCTTGACCTGTCTGGAAGAAAAGTACACTGTAATACTTGTTTTCTTTTGCATTAAGAACCCTGCCATAATTGATTCAACTTCAAATATCGAAAGTTGATGCAATCTAATCACCTTGATGCTATTGTGTATTATTCTATATTGGGTTTTCTCTCTGAAGTATCTTAAACTGATTACATGTAATTTAGTTGATCCTACTGAACTAGAATATATTGAATCCCGAATTTCACTGTTTTTATGTTTTGTCTTGTATGTAACTGGCTATACGTAATTAGGTTCATGCTCCCATAATAAACTGTGCTGGCTTGTTGTTCTTAACTGTGATATACATGTCTGCTGGTTTTAGTGGTTCATTTTGAATTAACACTCGTCGTACATGCTGCAGTTGGAGCTGAGGCTGATGATGATAGGATTCAACTACTACTCTCTCAAGTTGAGGGCAAAGATATCACTGAGTTGATTGCTGCCGGCAGAGAAAAATTGGCTTCAGTACCTGCTGGTGGAGGTGCTGCTTGTGCAGTTGCTGCACCTGGTGGTGGCGGTGCTGCACCTGCTGCTGAGGAGAAGAAGGAAGAAAA</genome_strand>
        <mrna_strand>GCCATTCGGAGGCTCACTTTGCTTAAAATCTCCACA.........................................................................................AGAAGAGAAGATGAAGGTTATCGCCGCTTACTTGTTGGCCGTCTTGGGTGGCAACACCTCCCCTTCAGAGAAGGATTTGAAGAAAATCCTTGCATCTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAGCTGAGGCTGATGATGATAGGATTCAACTACTACTCTCTCAAGTTGAGGGCAAAGATATCACTGAGTTGATTGCTGCCGGCAGAGAAAAATTGGCTTCAGTACCTGCTGGTGGAGGTGCTGCTTGTGCAGTTGCTGCACCTGGTGGTGGCGGTGCTGCACCTGCTGCTGAGGAGAAGAAGGAAGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E737389" ref_strand="+" ref_description="SGN-E737389 [LC09CE02]">
      <seq>gccattcggaggctcactttgcttaaaatctccacaagaagagaagatgaaggttatcgccgcttacttgttggccgtcttgggtggcaacacctccccttcagagaaggatttgaagaaaatccttgcatctgttggagctgaggctgatgatgataggattcaactactactctctcaagttgagggcaaagatatcactgagttgattgctgccggcagagaaaaattggcttcagtacctgctggtggaggtgctgcttgtgcagttgctgcacctggtggtggcggtgctgcacctgctgctgaggagaagaaggaagaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0099A03.1" temp_strand="+" temp_description="C06SLm0099A03.1  AC226730.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0099A03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="21029" stop="23035"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21329" g_stop="21364" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21365" i_stop="21453" i_length="89">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21454" g_stop="21551" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="134" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21552" i_stop="22542" i_length="991">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.511" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22543" g_stop="22735" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="327" r_length="193" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0099A03.1" gen_strand="+" ref_id="SGN-E737389" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>327</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0099A03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E737389" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21329" e_stop="21364"/>
          <exon e_start="21454" e_stop="21551"/>
          <exon e_start="22543" e_stop="22735"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCATTCGGAGGCTCACTTTGCTTAAAATCTCCACAGTACTTTCTCCCTCTCAATTTTCTATTGTTCGTAGTTTATTTTCTGCTCTTTATCTGAATTTTTTGTTTGTTGTGTTAATTTTGATCAGAGAAGAGAAGATGAAGGTTATCGCCGCTTACTTGTTGGCCGTCTTGGGTGGCAACACCTCCCCTTCAGAGAAGGATTTGAAGAAAATCCTTGCATCTGGTACGACCTTAGAGCCCATCTTACGGTTTTGTTGCATATGGATCCGAAATGTGTTGCCATTTATATATAACTCTATAGCGATTGATACGTGAAGTTATTTATTAGTATGTCTATGTAGTTGGTTTATGTGCCTAAATTACTTGTGCGATTTAGCTCAATTGCTAGAGATTAGATAATATTAGCGACAATGAGAGAAGTGCCAGCTTATATTGTGACAATTTTACTTGTGATTGTAATAGAGGTAGCTGAAGAAAATATTGTAGGAATGGTGAAAAAATAGTTTGGTAGAGATTTTTCAGAAATTGGAATTGTTTGAAGTGTGTGAAAGTTATATACTAGTTCATATAAGTGAATTAGGGTTAAATATTTTGGGATCTAGGGAAACCCTTGAATGCCGAGTGTGTAAATTGGGACTGAAGAGTAGTTAGGGGTTATGGAATAGCATCAAGTTAAACTCGTTCCTTGCCTTCGTTCAAGTTACCAGGTTTAGTAGTGGCTATTATGACCATGGGTAAAGTTTATTATTTTCGTTTTTCATGGTTCTCAAAGTAAGTTTGAGTTAGTCTGCAATGATGCCTGCGTAAGTTTATCCGTCTTGTGCCCTACCTGCTTGACCTGTCTGGAAGAAAAGTACACTGTAATACTTGTTTTCTTTTGCATTAAGAACCCTGCCATAATTGATTCAACTTCAAATATCGAAAGTTGATGCAATCTAATCACCTTGATGCTATTGTGTATTATTCTATATTGGGTTTTCTCTCTGAAGTATCTTAAACTGATTACATGTAATTTAGTTGATCCTACTGAACTAGAATATATTGAATCCCGAATTTCACTGTTTTTATGTTTTGTCTTGTATGTAACTGGCTATACGTAATTAGGTTCATGCTCCCATAATAAACTGTGCTGGCTTGTTGTTCTTAACTGTGATATACATGTCTGCTGGTTTTAGTGGTTCATTTTGAATTAACACTCGTCGTACATGCTGCAGTTGGAGCTGAGGCTGATGATGATAGGATTCAACTACTACTCTCTCAAGTTGAGGGCAAAGATATCACTGAGTTGATTGCTGCCGGCAGAGAAAAATTGGCTTCAGTACCTGCTGGTGGAGGTGCTGCTTGTGCAGTTGCTGCACCTGGTGGTGGCGGTGCTGCACCTGCTGCTGAGGAGAAGAAGGAAGAAAA</genome_strand>
        <mrna_strand>GCCATTCGGAGGCTCACTTTGCTTAAAATCTCCACA.........................................................................................AGAAGAGAAGATGAAGGTTATCGCCGCTTACTTGTTGGCCGTCTTGGGTGGCAACACCTCCCCTTCAGAGAAGGATTTGAAGAAAATCCTTGCATCTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAGCTGAGGCTGATGATGATAGGATTCAACTACTACTCTCTCAAGTTGAGGGCAAAGATATCACTGAGTTGATTGCTGCCGGCAGAGAAAAATTGGCTTCAGTACCTGCTGGTGGAGGTGCTGCTTGTGCAGTTGCTGCACCTGGTGGTGGCGGTGCTGCACCTGCTGCTGAGGAGAAGAAGGAAGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E737454" ref_strand="+" ref_description="SGN-E737454 [LC09DF04]">
      <seq>gcctttcggaggctcactttgcttaaaatctccacaagaagagaagatgaaggttatcgccgcttacttgttggccgtcttgggtggcaacacctccccttcagagaaggatttgaagaaaatccttgcatctgttggagctgaggctgatgatgataggattcaactactactctctcaagttgagggcaaagatatcactgagttgattgctgccggcagagaaaaattggcttcagtacctgctggtggaggtgctgcttgtgcagttgctgcacctggtggtggcggtgctgcacctgctgctgaggagaagaaggaagaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0099A03.1" temp_strand="+" temp_description="C06SLm0099A03.1  AC226730.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0099A03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="21029" stop="23035"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21329" g_stop="21364" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21365" i_stop="21453" i_length="89">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21454" g_stop="21551" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="134" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21552" i_stop="22542" i_length="991">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.511" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22543" g_stop="22735" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="327" r_length="193" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0099A03.1" gen_strand="+" ref_id="SGN-E737454" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>327</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0099A03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E737454" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21329" e_stop="21364"/>
          <exon e_start="21454" e_stop="21551"/>
          <exon e_start="22543" e_stop="22735"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCATTCGGAGGCTCACTTTGCTTAAAATCTCCACAGTACTTTCTCCCTCTCAATTTTCTATTGTTCGTAGTTTATTTTCTGCTCTTTATCTGAATTTTTTGTTTGTTGTGTTAATTTTGATCAGAGAAGAGAAGATGAAGGTTATCGCCGCTTACTTGTTGGCCGTCTTGGGTGGCAACACCTCCCCTTCAGAGAAGGATTTGAAGAAAATCCTTGCATCTGGTACGACCTTAGAGCCCATCTTACGGTTTTGTTGCATATGGATCCGAAATGTGTTGCCATTTATATATAACTCTATAGCGATTGATACGTGAAGTTATTTATTAGTATGTCTATGTAGTTGGTTTATGTGCCTAAATTACTTGTGCGATTTAGCTCAATTGCTAGAGATTAGATAATATTAGCGACAATGAGAGAAGTGCCAGCTTATATTGTGACAATTTTACTTGTGATTGTAATAGAGGTAGCTGAAGAAAATATTGTAGGAATGGTGAAAAAATAGTTTGGTAGAGATTTTTCAGAAATTGGAATTGTTTGAAGTGTGTGAAAGTTATATACTAGTTCATATAAGTGAATTAGGGTTAAATATTTTGGGATCTAGGGAAACCCTTGAATGCCGAGTGTGTAAATTGGGACTGAAGAGTAGTTAGGGGTTATGGAATAGCATCAAGTTAAACTCGTTCCTTGCCTTCGTTCAAGTTACCAGGTTTAGTAGTGGCTATTATGACCATGGGTAAAGTTTATTATTTTCGTTTTTCATGGTTCTCAAAGTAAGTTTGAGTTAGTCTGCAATGATGCCTGCGTAAGTTTATCCGTCTTGTGCCCTACCTGCTTGACCTGTCTGGAAGAAAAGTACACTGTAATACTTGTTTTCTTTTGCATTAAGAACCCTGCCATAATTGATTCAACTTCAAATATCGAAAGTTGATGCAATCTAATCACCTTGATGCTATTGTGTATTATTCTATATTGGGTTTTCTCTCTGAAGTATCTTAAACTGATTACATGTAATTTAGTTGATCCTACTGAACTAGAATATATTGAATCCCGAATTTCACTGTTTTTATGTTTTGTCTTGTATGTAACTGGCTATACGTAATTAGGTTCATGCTCCCATAATAAACTGTGCTGGCTTGTTGTTCTTAACTGTGATATACATGTCTGCTGGTTTTAGTGGTTCATTTTGAATTAACACTCGTCGTACATGCTGCAGTTGGAGCTGAGGCTGATGATGATAGGATTCAACTACTACTCTCTCAAGTTGAGGGCAAAGATATCACTGAGTTGATTGCTGCCGGCAGAGAAAAATTGGCTTCAGTACCTGCTGGTGGAGGTGCTGCTTGTGCAGTTGCTGCACCTGGTGGTGGCGGTGCTGCACCTGCTGCTGAGGAGAAGAAGGAAGAAAA</genome_strand>
        <mrna_strand>GCCTTTCGGAGGCTCACTTTGCTTAAAATCTCCACA.........................................................................................AGAAGAGAAGATGAAGGTTATCGCCGCTTACTTGTTGGCCGTCTTGGGTGGCAACACCTCCCCTTCAGAGAAGGATTTGAAGAAAATCCTTGCATCTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAGCTGAGGCTGATGATGATAGGATTCAACTACTACTCTCTCAAGTTGAGGGCAAAGATATCACTGAGTTGATTGCTGCCGGCAGAGAAAAATTGGCTTCAGTACCTGCTGGTGGAGGTGCTGCTTGTGCAGTTGCTGCACCTGGTGGTGGCGGTGCTGCACCTGCTGCTGAGGAGAAGAAGGAAGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E739739" ref_strand="+" ref_description="SGN-E739739 [LC18CF11]">
      <seq>gccattcggaggctcactttgcttaaaatctccacaagaagagaagatgaaggttatcgccgcttacttgttggccgtcttgggtggcaacacctccccttcagagaaggatttgaagaaaatccttgcatctgttggagctgaggctgatgatgataggattcaactactactctctcaagttgagggcaaagatatcactgagttgattgctgccggcagagaaaaattggcttcagtacctgctggtggaggtgctgcttgtgcagttgctgcacctggtggtggcggtgctgcacctgctgctgaggagaagaaggaagaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0099A03.1" temp_strand="+" temp_description="C06SLm0099A03.1  AC226730.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0099A03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="21029" stop="23035"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21329" g_stop="21364" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21365" i_stop="21453" i_length="89">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21454" g_stop="21551" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="134" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21552" i_stop="22542" i_length="991">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.511" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22543" g_stop="22735" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="327" r_length="193" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0099A03.1" gen_strand="+" ref_id="SGN-E739739" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>327</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0099A03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E739739" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21329" e_stop="21364"/>
          <exon e_start="21454" e_stop="21551"/>
          <exon e_start="22543" e_stop="22735"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCATTCGGAGGCTCACTTTGCTTAAAATCTCCACAGTACTTTCTCCCTCTCAATTTTCTATTGTTCGTAGTTTATTTTCTGCTCTTTATCTGAATTTTTTGTTTGTTGTGTTAATTTTGATCAGAGAAGAGAAGATGAAGGTTATCGCCGCTTACTTGTTGGCCGTCTTGGGTGGCAACACCTCCCCTTCAGAGAAGGATTTGAAGAAAATCCTTGCATCTGGTACGACCTTAGAGCCCATCTTACGGTTTTGTTGCATATGGATCCGAAATGTGTTGCCATTTATATATAACTCTATAGCGATTGATACGTGAAGTTATTTATTAGTATGTCTATGTAGTTGGTTTATGTGCCTAAATTACTTGTGCGATTTAGCTCAATTGCTAGAGATTAGATAATATTAGCGACAATGAGAGAAGTGCCAGCTTATATTGTGACAATTTTACTTGTGATTGTAATAGAGGTAGCTGAAGAAAATATTGTAGGAATGGTGAAAAAATAGTTTGGTAGAGATTTTTCAGAAATTGGAATTGTTTGAAGTGTGTGAAAGTTATATACTAGTTCATATAAGTGAATTAGGGTTAAATATTTTGGGATCTAGGGAAACCCTTGAATGCCGAGTGTGTAAATTGGGACTGAAGAGTAGTTAGGGGTTATGGAATAGCATCAAGTTAAACTCGTTCCTTGCCTTCGTTCAAGTTACCAGGTTTAGTAGTGGCTATTATGACCATGGGTAAAGTTTATTATTTTCGTTTTTCATGGTTCTCAAAGTAAGTTTGAGTTAGTCTGCAATGATGCCTGCGTAAGTTTATCCGTCTTGTGCCCTACCTGCTTGACCTGTCTGGAAGAAAAGTACACTGTAATACTTGTTTTCTTTTGCATTAAGAACCCTGCCATAATTGATTCAACTTCAAATATCGAAAGTTGATGCAATCTAATCACCTTGATGCTATTGTGTATTATTCTATATTGGGTTTTCTCTCTGAAGTATCTTAAACTGATTACATGTAATTTAGTTGATCCTACTGAACTAGAATATATTGAATCCCGAATTTCACTGTTTTTATGTTTTGTCTTGTATGTAACTGGCTATACGTAATTAGGTTCATGCTCCCATAATAAACTGTGCTGGCTTGTTGTTCTTAACTGTGATATACATGTCTGCTGGTTTTAGTGGTTCATTTTGAATTAACACTCGTCGTACATGCTGCAGTTGGAGCTGAGGCTGATGATGATAGGATTCAACTACTACTCTCTCAAGTTGAGGGCAAAGATATCACTGAGTTGATTGCTGCCGGCAGAGAAAAATTGGCTTCAGTACCTGCTGGTGGAGGTGCTGCTTGTGCAGTTGCTGCACCTGGTGGTGGCGGTGCTGCACCTGCTGCTGAGGAGAAGAAGGAAGAAAA</genome_strand>
        <mrna_strand>GCCATTCGGAGGCTCACTTTGCTTAAAATCTCCACA.........................................................................................AGAAGAGAAGATGAAGGTTATCGCCGCTTACTTGTTGGCCGTCTTGGGTGGCAACACCTCCCCTTCAGAGAAGGATTTGAAGAAAATCCTTGCATCTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAGCTGAGGCTGATGATGATAGGATTCAACTACTACTCTCTCAAGTTGAGGGCAAAGATATCACTGAGTTGATTGCTGCCGGCAGAGAAAAATTGGCTTCAGTACCTGCTGGTGGAGGTGCTGCTTGTGCAGTTGCTGCACCTGGTGGTGGCGGTGCTGCACCTGCTGCTGAGGAGAAGAAGGAAGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E739965" ref_strand="+" ref_description="SGN-E739965 [LC19CB02]">
      <seq>gccattcggaggctcactttgcttaaaatctccacaagaagagaagatgaaggttatcgccgcttacttgttggccgtcttgggtggcaacacctccccttcagagaaggatttgaagaaaatccttgcatctgttggagctgaggctgatgatgataggattcaactactactctctcaagttgagggcaaagatatcactgagttgattgctgccggcagagaaaaattggcttcagtacctgctggtggaggtgctgcttgtgcagttgctgcacctggtggtggcggtgctgcacctgctgctgaggagaagaaggaagaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0099A03.1" temp_strand="+" temp_description="C06SLm0099A03.1  AC226730.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0099A03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="21029" stop="23035"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21329" g_stop="21364" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21365" i_stop="21453" i_length="89">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21454" g_stop="21551" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="134" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21552" i_stop="22542" i_length="991">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.511" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22543" g_stop="22735" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="327" r_length="193" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0099A03.1" gen_strand="+" ref_id="SGN-E739965" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>327</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0099A03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E739965" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21329" e_stop="21364"/>
          <exon e_start="21454" e_stop="21551"/>
          <exon e_start="22543" e_stop="22735"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCATTCGGAGGCTCACTTTGCTTAAAATCTCCACAGTACTTTCTCCCTCTCAATTTTCTATTGTTCGTAGTTTATTTTCTGCTCTTTATCTGAATTTTTTGTTTGTTGTGTTAATTTTGATCAGAGAAGAGAAGATGAAGGTTATCGCCGCTTACTTGTTGGCCGTCTTGGGTGGCAACACCTCCCCTTCAGAGAAGGATTTGAAGAAAATCCTTGCATCTGGTACGACCTTAGAGCCCATCTTACGGTTTTGTTGCATATGGATCCGAAATGTGTTGCCATTTATATATAACTCTATAGCGATTGATACGTGAAGTTATTTATTAGTATGTCTATGTAGTTGGTTTATGTGCCTAAATTACTTGTGCGATTTAGCTCAATTGCTAGAGATTAGATAATATTAGCGACAATGAGAGAAGTGCCAGCTTATATTGTGACAATTTTACTTGTGATTGTAATAGAGGTAGCTGAAGAAAATATTGTAGGAATGGTGAAAAAATAGTTTGGTAGAGATTTTTCAGAAATTGGAATTGTTTGAAGTGTGTGAAAGTTATATACTAGTTCATATAAGTGAATTAGGGTTAAATATTTTGGGATCTAGGGAAACCCTTGAATGCCGAGTGTGTAAATTGGGACTGAAGAGTAGTTAGGGGTTATGGAATAGCATCAAGTTAAACTCGTTCCTTGCCTTCGTTCAAGTTACCAGGTTTAGTAGTGGCTATTATGACCATGGGTAAAGTTTATTATTTTCGTTTTTCATGGTTCTCAAAGTAAGTTTGAGTTAGTCTGCAATGATGCCTGCGTAAGTTTATCCGTCTTGTGCCCTACCTGCTTGACCTGTCTGGAAGAAAAGTACACTGTAATACTTGTTTTCTTTTGCATTAAGAACCCTGCCATAATTGATTCAACTTCAAATATCGAAAGTTGATGCAATCTAATCACCTTGATGCTATTGTGTATTATTCTATATTGGGTTTTCTCTCTGAAGTATCTTAAACTGATTACATGTAATTTAGTTGATCCTACTGAACTAGAATATATTGAATCCCGAATTTCACTGTTTTTATGTTTTGTCTTGTATGTAACTGGCTATACGTAATTAGGTTCATGCTCCCATAATAAACTGTGCTGGCTTGTTGTTCTTAACTGTGATATACATGTCTGCTGGTTTTAGTGGTTCATTTTGAATTAACACTCGTCGTACATGCTGCAGTTGGAGCTGAGGCTGATGATGATAGGATTCAACTACTACTCTCTCAAGTTGAGGGCAAAGATATCACTGAGTTGATTGCTGCCGGCAGAGAAAAATTGGCTTCAGTACCTGCTGGTGGAGGTGCTGCTTGTGCAGTTGCTGCACCTGGTGGTGGCGGTGCTGCACCTGCTGCTGAGGAGAAGAAGGAAGAAAA</genome_strand>
        <mrna_strand>GCCATTCGGAGGCTCACTTTGCTTAAAATCTCCACA.........................................................................................AGAAGAGAAGATGAAGGTTATCGCCGCTTACTTGTTGGCCGTCTTGGGTGGCAACACCTCCCCTTCAGAGAAGGATTTGAAGAAAATCCTTGCATCTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAGCTGAGGCTGATGATGATAGGATTCAACTACTACTCTCTCAAGTTGAGGGCAAAGATATCACTGAGTTGATTGCTGCCGGCAGAGAAAAATTGGCTTCAGTACCTGCTGGTGGAGGTGCTGCTTGTGCAGTTGCTGCACCTGGTGGTGGCGGTGCTGCACCTGCTGCTGAGGAGAAGAAGGAAGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E740804" ref_strand="+" ref_description="SGN-E740804 [LC22DH06]">
      <seq>gccattcggaggctcactttgcttaaaatctccacaagaagagaagatgaaggttatcgccgcttacttgttggccgtcttgggtggcaacacctccccttcagagaaggatttgaagaaaatccttgcatctgttggagctgaggctgatgatgataggattcaactactactctctcaagttgagggcaaagatatcactgagttgattgctgccggcagagaaaaattggcttcagtacctgctggtggaggtgctgcttgtgcagttgctgcacctggtggtggcggtgctgcacctgctgctgaggagaagaaggaagaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0099A03.1" temp_strand="+" temp_description="C06SLm0099A03.1  AC226730.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0099A03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="21029" stop="23035"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21329" g_stop="21364" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21365" i_stop="21453" i_length="89">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21454" g_stop="21551" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="134" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21552" i_stop="22542" i_length="991">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.511" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22543" g_stop="22735" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="327" r_length="193" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0099A03.1" gen_strand="+" ref_id="SGN-E740804" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>327</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0099A03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E740804" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21329" e_stop="21364"/>
          <exon e_start="21454" e_stop="21551"/>
          <exon e_start="22543" e_stop="22735"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCATTCGGAGGCTCACTTTGCTTAAAATCTCCACAGTACTTTCTCCCTCTCAATTTTCTATTGTTCGTAGTTTATTTTCTGCTCTTTATCTGAATTTTTTGTTTGTTGTGTTAATTTTGATCAGAGAAGAGAAGATGAAGGTTATCGCCGCTTACTTGTTGGCCGTCTTGGGTGGCAACACCTCCCCTTCAGAGAAGGATTTGAAGAAAATCCTTGCATCTGGTACGACCTTAGAGCCCATCTTACGGTTTTGTTGCATATGGATCCGAAATGTGTTGCCATTTATATATAACTCTATAGCGATTGATACGTGAAGTTATTTATTAGTATGTCTATGTAGTTGGTTTATGTGCCTAAATTACTTGTGCGATTTAGCTCAATTGCTAGAGATTAGATAATATTAGCGACAATGAGAGAAGTGCCAGCTTATATTGTGACAATTTTACTTGTGATTGTAATAGAGGTAGCTGAAGAAAATATTGTAGGAATGGTGAAAAAATAGTTTGGTAGAGATTTTTCAGAAATTGGAATTGTTTGAAGTGTGTGAAAGTTATATACTAGTTCATATAAGTGAATTAGGGTTAAATATTTTGGGATCTAGGGAAACCCTTGAATGCCGAGTGTGTAAATTGGGACTGAAGAGTAGTTAGGGGTTATGGAATAGCATCAAGTTAAACTCGTTCCTTGCCTTCGTTCAAGTTACCAGGTTTAGTAGTGGCTATTATGACCATGGGTAAAGTTTATTATTTTCGTTTTTCATGGTTCTCAAAGTAAGTTTGAGTTAGTCTGCAATGATGCCTGCGTAAGTTTATCCGTCTTGTGCCCTACCTGCTTGACCTGTCTGGAAGAAAAGTACACTGTAATACTTGTTTTCTTTTGCATTAAGAACCCTGCCATAATTGATTCAACTTCAAATATCGAAAGTTGATGCAATCTAATCACCTTGATGCTATTGTGTATTATTCTATATTGGGTTTTCTCTCTGAAGTATCTTAAACTGATTACATGTAATTTAGTTGATCCTACTGAACTAGAATATATTGAATCCCGAATTTCACTGTTTTTATGTTTTGTCTTGTATGTAACTGGCTATACGTAATTAGGTTCATGCTCCCATAATAAACTGTGCTGGCTTGTTGTTCTTAACTGTGATATACATGTCTGCTGGTTTTAGTGGTTCATTTTGAATTAACACTCGTCGTACATGCTGCAGTTGGAGCTGAGGCTGATGATGATAGGATTCAACTACTACTCTCTCAAGTTGAGGGCAAAGATATCACTGAGTTGATTGCTGCCGGCAGAGAAAAATTGGCTTCAGTACCTGCTGGTGGAGGTGCTGCTTGTGCAGTTGCTGCACCTGGTGGTGGCGGTGCTGCACCTGCTGCTGAGGAGAAGAAGGAAGAAAA</genome_strand>
        <mrna_strand>GCCATTCGGAGGCTCACTTTGCTTAAAATCTCCACA.........................................................................................AGAAGAGAAGATGAAGGTTATCGCCGCTTACTTGTTGGCCGTCTTGGGTGGCAACACCTCCCCTTCAGAGAAGGATTTGAAGAAAATCCTTGCATCTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAGCTGAGGCTGATGATGATAGGATTCAACTACTACTCTCTCAAGTTGAGGGCAAAGATATCACTGAGTTGATTGCTGCCGGCAGAGAAAAATTGGCTTCAGTACCTGCTGGTGGAGGTGCTGCTTGTGCAGTTGCTGCACCTGGTGGTGGCGGTGCTGCACCTGCTGCTGAGGAGAAGAAGGAAGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E337526" ref_strand="+" ref_description="SGN-E337526 [cTOE-11-L4]">
      <seq>ccattcggaggctcactttgcttaaaatctccacaagaagagaagatgaaggttatcgccgcttacttgttggccgtcttgggtggcaacacctccccttcagagaaggatttgaagaaaatccttgcatctgttggagctgaggctgatgatgataggattcaactactactctctcaagttgagggcaaagatatcactgagttgattgctgccggcagagaaaaattggcttcagtacctgctggtggaggtgctgcttgtgcagttgctgcacctggtggtggcggtgctgcacctgctgctgaggagaagaaggaagaaaagaaagtggaagaaaaagaagagtcagacgatgacatgggtttcagtcttttcgattagaagtcgaagaaatcagtttatgaagtatccccttttccatttgttgttccccttgagagtgtattttaggaggtttattgtctacttacagattttgcttgaacttagaattttcatggaaaacatttgcaaacagttgaaattataatatgtatttcaaatgttcagcttggttcaatatatctaccctttttgatcttacaataaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0099A03.1" temp_strand="+" temp_description="C06SLm0099A03.1  AC226730.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0099A03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="21030" stop="23308"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21330" g_stop="21364" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21365" i_stop="21453" i_length="89">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21454" g_stop="21551" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="133" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21552" i_stop="22542" i_length="991">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.511" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22543" g_stop="23007" g_length="465"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="598" r_length="465" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0099A03.1" gen_strand="+" ref_id="SGN-E337526" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>598</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0099A03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E337526" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21330" e_stop="21364"/>
          <exon e_start="21454" e_stop="21551"/>
          <exon e_start="22543" e_stop="23007"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATTCGGAGGCTCACTTTGCTTAAAATCTCCACAGTACTTTCTCCCTCTCAATTTTCTATTGTTCGTAGTTTATTTTCTGCTCTTTATCTGAATTTTTTGTTTGTTGTGTTAATTTTGATCAGAGAAGAGAAGATGAAGGTTATCGCCGCTTACTTGTTGGCCGTCTTGGGTGGCAACACCTCCCCTTCAGAGAAGGATTTGAAGAAAATCCTTGCATCTGGTACGACCTTAGAGCCCATCTTACGGTTTTGTTGCATATGGATCCGAAATGTGTTGCCATTTATATATAACTCTATAGCGATTGATACGTGAAGTTATTTATTAGTATGTCTATGTAGTTGGTTTATGTGCCTAAATTACTTGTGCGATTTAGCTCAATTGCTAGAGATTAGATAATATTAGCGACAATGAGAGAAGTGCCAGCTTATATTGTGACAATTTTACTTGTGATTGTAATAGAGGTAGCTGAAGAAAATATTGTAGGAATGGTGAAAAAATAGTTTGGTAGAGATTTTTCAGAAATTGGAATTGTTTGAAGTGTGTGAAAGTTATATACTAGTTCATATAAGTGAATTAGGGTTAAATATTTTGGGATCTAGGGAAACCCTTGAATGCCGAGTGTGTAAATTGGGACTGAAGAGTAGTTAGGGGTTATGGAATAGCATCAAGTTAAACTCGTTCCTTGCCTTCGTTCAAGTTACCAGGTTTAGTAGTGGCTATTATGACCATGGGTAAAGTTTATTATTTTCGTTTTTCATGGTTCTCAAAGTAAGTTTGAGTTAGTCTGCAATGATGCCTGCGTAAGTTTATCCGTCTTGTGCCCTACCTGCTTGACCTGTCTGGAAGAAAAGTACACTGTAATACTTGTTTTCTTTTGCATTAAGAACCCTGCCATAATTGATTCAACTTCAAATATCGAAAGTTGATGCAATCTAATCACCTTGATGCTATTGTGTATTATTCTATATTGGGTTTTCTCTCTGAAGTATCTTAAACTGATTACATGTAATTTAGTTGATCCTACTGAACTAGAATATATTGAATCCCGAATTTCACTGTTTTTATGTTTTGTCTTGTATGTAACTGGCTATACGTAATTAGGTTCATGCTCCCATAATAAACTGTGCTGGCTTGTTGTTCTTAACTGTGATATACATGTCTGCTGGTTTTAGTGGTTCATTTTGAATTAACACTCGTCGTACATGCTGCAGTTGGAGCTGAGGCTGATGATGATAGGATTCAACTACTACTCTCTCAAGTTGAGGGCAAAGATATCACTGAGTTGATTGCTGCCGGCAGAGAAAAATTGGCTTCAGTACCTGCTGGTGGAGGTGCTGCTTGTGCAGTTGCTGCACCTGGTGGTGGCGGTGCTGCACCTGCTGCTGAGGAGAAGAAGGAAGAAAAGAAAGTGGAAGAAAAAGAAGAGTCAGACGATGACATGGGTTTCAGTCTTTTCGATTAGAAGTCGAAGAAATCAGTTTATGAAGTATCCCCTTTTCCATTTGTTGTTCCCCTTGAGAGTGTATTTTAGGAGGTTTATTGTCTACTTACAGATTTTGCTTGAACTTAGAATTTTCATGGAAAACATTTGCAAACAGTTGAAATTATAATATGTATTTCAAATGTTCAGCTTGGTTCAATATATCTACCCTTTTTGATCTTACAATATTAAAACA</genome_strand>
        <mrna_strand>CCATTCGGAGGCTCACTTTGCTTAAAATCTCCACA.........................................................................................AGAAGAGAAGATGAAGGTTATCGCCGCTTACTTGTTGGCCGTCTTGGGTGGCAACACCTCCCCTTCAGAGAAGGATTTGAAGAAAATCCTTGCATCTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAGCTGAGGCTGATGATGATAGGATTCAACTACTACTCTCTCAAGTTGAGGGCAAAGATATCACTGAGTTGATTGCTGCCGGCAGAGAAAAATTGGCTTCAGTACCTGCTGGTGGAGGTGCTGCTTGTGCAGTTGCTGCACCTGGTGGTGGCGGTGCTGCACCTGCTGCTGAGGAGAAGAAGGAAGAAAAGAAAGTGGAAGAAAAAGAAGAGTCAGACGATGACATGGGTTTCAGTCTTTTCGATTAGAAGTCGAAGAAATCAGTTTATGAAGTATCCCCTTTTCCATTTGTTGTTCCCCTTGAGAGTGTATTTTAGGAGGTTTATTGTCTACTTACAGATTTTGCTTGAACTTAGAATTTTCATGGAAAACATTTGCAAACAGTTGAAATTATAATATGTATTTCAAATGTTCAGCTTGGTTCAATATATCTACCCTTTTTGATCTTACAATAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E338453" ref_strand="+" ref_description="SGN-E338453 [cTOE-15-M12]">
      <seq>ccattcggaggctcactttgcttaaaatctccacaagaagagaagatgaaggttatcgccgcttaccttgttggccgtcttgggtggcaacacctccccttcagagaaggatttgaagaaaatccttgcatctgttggagctgaggctgatgatgataggattcaactactactctctcaagttgagggcaaagatatcactgagttgattgctgccggcagagaaaaattggcttcagtacctgctggtggaggtgctgcttgtgccagttgctgcacctggtggtggcggtgctgcacctgctgctgaggagaagaaggaagaaaagaaagtggaagaaaaagaagagtcagacgatgacatgggtttcagtcttttcgattagaagtcgaagaaatcagtttatgaagtatccccttttccatttgttgttccccttgagagtgtattttaggaggtttattgtctacttacagattttgcttgaacttagaattttcatggaaaacatttgcaaacagttgaaattataatatgtatttcaaatgttcagcttggttcaataaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0099A03.1" temp_strand="+" temp_description="C06SLm0099A03.1  AC226730.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0099A03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="21030" stop="23275"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21330" g_stop="21364" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21365" i_stop="21453" i_length="89">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.993" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21454" g_stop="21551" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="134" r_length="99" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21552" i_stop="22542" i_length="991">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.511" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22543" g_stop="22972" g_length="430"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="565" r_length="431" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="566" polyA_stop="577"/>
      <MATCH_line gen_id="C06SLm0099A03.1" gen_strand="+" ref_id="SGN-E338453" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>563</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0099A03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E338453" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21330" e_stop="21364"/>
          <exon e_start="21454" e_stop="21551"/>
          <exon e_start="22543" e_stop="22972"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATTCGGAGGCTCACTTTGCTTAAAATCTCCACAGTACTTTCTCCCTCTCAATTTTCTATTGTTCGTAGTTTATTTTCTGCTCTTTATCTGAATTTTTTGTTTGTTGTGTTAATTTTGATCAGAGAAGAGAAGATGAAGGTTATCGCCGCTTA-CTTGTTGGCCGTCTTGGGTGGCAACACCTCCCCTTCAGAGAAGGATTTGAAGAAAATCCTTGCATCTGGTACGACCTTAGAGCCCATCTTACGGTTTTGTTGCATATGGATCCGAAATGTGTTGCCATTTATATATAACTCTATAGCGATTGATACGTGAAGTTATTTATTAGTATGTCTATGTAGTTGGTTTATGTGCCTAAATTACTTGTGCGATTTAGCTCAATTGCTAGAGATTAGATAATATTAGCGACAATGAGAGAAGTGCCAGCTTATATTGTGACAATTTTACTTGTGATTGTAATAGAGGTAGCTGAAGAAAATATTGTAGGAATGGTGAAAAAATAGTTTGGTAGAGATTTTTCAGAAATTGGAATTGTTTGAAGTGTGTGAAAGTTATATACTAGTTCATATAAGTGAATTAGGGTTAAATATTTTGGGATCTAGGGAAACCCTTGAATGCCGAGTGTGTAAATTGGGACTGAAGAGTAGTTAGGGGTTATGGAATAGCATCAAGTTAAACTCGTTCCTTGCCTTCGTTCAAGTTACCAGGTTTAGTAGTGGCTATTATGACCATGGGTAAAGTTTATTATTTTCGTTTTTCATGGTTCTCAAAGTAAGTTTGAGTTAGTCTGCAATGATGCCTGCGTAAGTTTATCCGTCTTGTGCCCTACCTGCTTGACCTGTCTGGAAGAAAAGTACACTGTAATACTTGTTTTCTTTTGCATTAAGAACCCTGCCATAATTGATTCAACTTCAAATATCGAAAGTTGATGCAATCTAATCACCTTGATGCTATTGTGTATTATTCTATATTGGGTTTTCTCTCTGAAGTATCTTAAACTGATTACATGTAATTTAGTTGATCCTACTGAACTAGAATATATTGAATCCCGAATTTCACTGTTTTTATGTTTTGTCTTGTATGTAACTGGCTATACGTAATTAGGTTCATGCTCCCATAATAAACTGTGCTGGCTTGTTGTTCTTAACTGTGATATACATGTCTGCTGGTTTTAGTGGTTCATTTTGAATTAACACTCGTCGTACATGCTGCAGTTGGAGCTGAGGCTGATGATGATAGGATTCAACTACTACTCTCTCAAGTTGAGGGCAAAGATATCACTGAGTTGATTGCTGCCGGCAGAGAAAAATTGGCTTCAGTACCTGCTGGTGGAGGTGCTGCTTGTG-CAGTTGCTGCACCTGGTGGTGGCGGTGCTGCACCTGCTGCTGAGGAGAAGAAGGAAGAAAAGAAAGTGGAAGAAAAAGAAGAGTCAGACGATGACATGGGTTTCAGTCTTTTCGATTAGAAGTCGAAGAAATCAGTTTATGAAGTATCCCCTTTTCCATTTGTTGTTCCCCTTGAGAGTGTATTTTAGGAGGTTTATTGTCTACTTACAGATTTTGCTTGAACTTAGAATTTTCATGGAAAACATTTGCAAACAGTTGAAATTATAATATGTATTTCAAATGTTCAGCTTGGTTCAAT</genome_strand>
        <mrna_strand>CCATTCGGAGGCTCACTTTGCTTAAAATCTCCACA.........................................................................................AGAAGAGAAGATGAAGGTTATCGCCGCTTACCTTGTTGGCCGTCTTGGGTGGCAACACCTCCCCTTCAGAGAAGGATTTGAAGAAAATCCTTGCATCTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAGCTGAGGCTGATGATGATAGGATTCAACTACTACTCTCTCAAGTTGAGGGCAAAGATATCACTGAGTTGATTGCTGCCGGCAGAGAAAAATTGGCTTCAGTACCTGCTGGTGGAGGTGCTGCTTGTGCCAGTTGCTGCACCTGGTGGTGGCGGTGCTGCACCTGCTGCTGAGGAGAAGAAGGAAGAAAAGAAAGTGGAAGAAAAAGAAGAGTCAGACGATGACATGGGTTTCAGTCTTTTCGATTAGAAGTCGAAGAAATCAGTTTATGAAGTATCCCCTTTTCCATTTGTTGTTCCCCTTGAGAGTGTATTTTAGGAGGTTTATTGTCTACTTACAGATTTTGCTTGAACTTAGAATTTTCATGGAAAACATTTGCAAACAGTTGAAATTATAATATGTATTTCAAATGTTCAGCTTGGTTCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E337215" ref_strand="+" ref_description="SGN-E337215 [cTOE-7-K21]">
      <seq>ccattcggaggctcactttgcttaaaatctccacaagaagagaagatgaaggttatcgccgcttacttgttggccgtcttgggtggcaacacctccccttcagagaaggatttgaagaaaatccttgcatctgttggagctgaggctgatgatgataggattcaactactactctctcaagttgagggcaaagatatcactgagttgattgctgccggcagagaaaaattggcttcagtacctgctggtggaggtgctgcttgtgcagttgctgcacctggtggtggcggtgctgcacctgctgctgaggagaagaaggaagaaaagaaagtggaagaaaaagaagagtcagacgatgacatgggtttcagtcttttcgattagaagtcgaagaaatcagtttatgaagtatccccttttccatttgttgttccccttgagagtgtattttaggaggtttattgtctacttacagattttgcttgaacttanaattttcatggaaaacatttgcaaacagttgaaattataatatgtatttcaaatgttcaacttggttcaataaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0099A03.1" temp_strand="+" temp_description="C06SLm0099A03.1  AC226730.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0099A03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="21030" stop="23275"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21330" g_stop="21364" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21365" i_stop="21453" i_length="89">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21454" g_stop="21551" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="133" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21552" i_stop="22542" i_length="991">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.511" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22543" g_stop="22972" g_length="430"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="563" r_length="430" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="564" polyA_stop="575"/>
      <MATCH_line gen_id="C06SLm0099A03.1" gen_strand="+" ref_id="SGN-E337215" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>563</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0099A03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E337215" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21330" e_stop="21364"/>
          <exon e_start="21454" e_stop="21551"/>
          <exon e_start="22543" e_stop="22972"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATTCGGAGGCTCACTTTGCTTAAAATCTCCACAGTACTTTCTCCCTCTCAATTTTCTATTGTTCGTAGTTTATTTTCTGCTCTTTATCTGAATTTTTTGTTTGTTGTGTTAATTTTGATCAGAGAAGAGAAGATGAAGGTTATCGCCGCTTACTTGTTGGCCGTCTTGGGTGGCAACACCTCCCCTTCAGAGAAGGATTTGAAGAAAATCCTTGCATCTGGTACGACCTTAGAGCCCATCTTACGGTTTTGTTGCATATGGATCCGAAATGTGTTGCCATTTATATATAACTCTATAGCGATTGATACGTGAAGTTATTTATTAGTATGTCTATGTAGTTGGTTTATGTGCCTAAATTACTTGTGCGATTTAGCTCAATTGCTAGAGATTAGATAATATTAGCGACAATGAGAGAAGTGCCAGCTTATATTGTGACAATTTTACTTGTGATTGTAATAGAGGTAGCTGAAGAAAATATTGTAGGAATGGTGAAAAAATAGTTTGGTAGAGATTTTTCAGAAATTGGAATTGTTTGAAGTGTGTGAAAGTTATATACTAGTTCATATAAGTGAATTAGGGTTAAATATTTTGGGATCTAGGGAAACCCTTGAATGCCGAGTGTGTAAATTGGGACTGAAGAGTAGTTAGGGGTTATGGAATAGCATCAAGTTAAACTCGTTCCTTGCCTTCGTTCAAGTTACCAGGTTTAGTAGTGGCTATTATGACCATGGGTAAAGTTTATTATTTTCGTTTTTCATGGTTCTCAAAGTAAGTTTGAGTTAGTCTGCAATGATGCCTGCGTAAGTTTATCCGTCTTGTGCCCTACCTGCTTGACCTGTCTGGAAGAAAAGTACACTGTAATACTTGTTTTCTTTTGCATTAAGAACCCTGCCATAATTGATTCAACTTCAAATATCGAAAGTTGATGCAATCTAATCACCTTGATGCTATTGTGTATTATTCTATATTGGGTTTTCTCTCTGAAGTATCTTAAACTGATTACATGTAATTTAGTTGATCCTACTGAACTAGAATATATTGAATCCCGAATTTCACTGTTTTTATGTTTTGTCTTGTATGTAACTGGCTATACGTAATTAGGTTCATGCTCCCATAATAAACTGTGCTGGCTTGTTGTTCTTAACTGTGATATACATGTCTGCTGGTTTTAGTGGTTCATTTTGAATTAACACTCGTCGTACATGCTGCAGTTGGAGCTGAGGCTGATGATGATAGGATTCAACTACTACTCTCTCAAGTTGAGGGCAAAGATATCACTGAGTTGATTGCTGCCGGCAGAGAAAAATTGGCTTCAGTACCTGCTGGTGGAGGTGCTGCTTGTGCAGTTGCTGCACCTGGTGGTGGCGGTGCTGCACCTGCTGCTGAGGAGAAGAAGGAAGAAAAGAAAGTGGAAGAAAAAGAAGAGTCAGACGATGACATGGGTTTCAGTCTTTTCGATTAGAAGTCGAAGAAATCAGTTTATGAAGTATCCCCTTTTCCATTTGTTGTTCCCCTTGAGAGTGTATTTTAGGAGGTTTATTGTCTACTTACAGATTTTGCTTGAACTTAGAATTTTCATGGAAAACATTTGCAAACAGTTGAAATTATAATATGTATTTCAAATGTTCAGCTTGGTTCAAT</genome_strand>
        <mrna_strand>CCATTCGGAGGCTCACTTTGCTTAAAATCTCCACA.........................................................................................AGAAGAGAAGATGAAGGTTATCGCCGCTTACTTGTTGGCCGTCTTGGGTGGCAACACCTCCCCTTCAGAGAAGGATTTGAAGAAAATCCTTGCATCTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAGCTGAGGCTGATGATGATAGGATTCAACTACTACTCTCTCAAGTTGAGGGCAAAGATATCACTGAGTTGATTGCTGCCGGCAGAGAAAAATTGGCTTCAGTACCTGCTGGTGGAGGTGCTGCTTGTGCAGTTGCTGCACCTGGTGGTGGCGGTGCTGCACCTGCTGCTGAGGAGAAGAAGGAAGAAAAGAAAGTGGAAGAAAAAGAAGAGTCAGACGATGACATGGGTTTCAGTCTTTTCGATTAGAAGTCGAAGAAATCAGTTTATGAAGTATCCCCTTTTCCATTTGTTGTTCCCCTTGAGAGTGTATTTTAGGAGGTTTATTGTCTACTTACAGATTTTGCTTGAACTTANAATTTTCATGGAAAACATTTGCAAACAGTTGAAATTATAATATGTATTTCAAATGTTCAACTTGGTTCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E288779" ref_strand="+" ref_description="SGN-E288779 [cLES-17-M5]">
      <seq>caggcggaggctcactttgcttaaaatctccacaagaagagaagatgaaggttatcgccgcttacttgttggccgtcttgggtggcaacacctccccttcagagaaggatttgaagaaaatccttgcatctgttggagctgaggctgatgatgataggattcaactactactctctcaagttgagggcaaagatatcactgagttgattgctgccggcagagaaaaattggcttcagtacctgctggtggaggtgctgcttgtgcagttgctgcacctggtggtggcggtgctgcacctgctgctgaggagaagaaggaagaaaagaaagtggaagaaaaagaagagtcagacgatgacatgggtttcagtcttttcgattagaagtcgaagaaatcagtttatgaagtatccccttttccatttgttgttccccttgagagtgtattttaggaggtttattgtctacttacagattttgcttgaacttagaattttcatggaaaacatttgcaaacagttgaaattataatatgtatttcaaatgtttaacttggttcaantaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0099A03.1" temp_strand="+" temp_description="C06SLm0099A03.1  AC226730.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0099A03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="21031" stop="23275"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21331" g_stop="21364" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="0.941"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21365" i_stop="21453" i_length="89">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21454" g_stop="21551" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="132" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21552" i_stop="22542" i_length="991">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.511" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22543" g_stop="22972" g_length="430"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="562" r_length="430" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="564" polyA_stop="575"/>
      <MATCH_line gen_id="C06SLm0099A03.1" gen_strand="+" ref_id="SGN-E288779" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0099A03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E288779" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21331" e_stop="21364"/>
          <exon e_start="21454" e_stop="21551"/>
          <exon e_start="22543" e_stop="22972"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTCGGAGGCTCACTTTGCTTAAAATCTCCACAGTACTTTCTCCCTCTCAATTTTCTATTGTTCGTAGTTTATTTTCTGCTCTTTATCTGAATTTTTTGTTTGTTGTGTTAATTTTGATCAGAGAAGAGAAGATGAAGGTTATCGCCGCTTACTTGTTGGCCGTCTTGGGTGGCAACACCTCCCCTTCAGAGAAGGATTTGAAGAAAATCCTTGCATCTGGTACGACCTTAGAGCCCATCTTACGGTTTTGTTGCATATGGATCCGAAATGTGTTGCCATTTATATATAACTCTATAGCGATTGATACGTGAAGTTATTTATTAGTATGTCTATGTAGTTGGTTTATGTGCCTAAATTACTTGTGCGATTTAGCTCAATTGCTAGAGATTAGATAATATTAGCGACAATGAGAGAAGTGCCAGCTTATATTGTGACAATTTTACTTGTGATTGTAATAGAGGTAGCTGAAGAAAATATTGTAGGAATGGTGAAAAAATAGTTTGGTAGAGATTTTTCAGAAATTGGAATTGTTTGAAGTGTGTGAAAGTTATATACTAGTTCATATAAGTGAATTAGGGTTAAATATTTTGGGATCTAGGGAAACCCTTGAATGCCGAGTGTGTAAATTGGGACTGAAGAGTAGTTAGGGGTTATGGAATAGCATCAAGTTAAACTCGTTCCTTGCCTTCGTTCAAGTTACCAGGTTTAGTAGTGGCTATTATGACCATGGGTAAAGTTTATTATTTTCGTTTTTCATGGTTCTCAAAGTAAGTTTGAGTTAGTCTGCAATGATGCCTGCGTAAGTTTATCCGTCTTGTGCCCTACCTGCTTGACCTGTCTGGAAGAAAAGTACACTGTAATACTTGTTTTCTTTTGCATTAAGAACCCTGCCATAATTGATTCAACTTCAAATATCGAAAGTTGATGCAATCTAATCACCTTGATGCTATTGTGTATTATTCTATATTGGGTTTTCTCTCTGAAGTATCTTAAACTGATTACATGTAATTTAGTTGATCCTACTGAACTAGAATATATTGAATCCCGAATTTCACTGTTTTTATGTTTTGTCTTGTATGTAACTGGCTATACGTAATTAGGTTCATGCTCCCATAATAAACTGTGCTGGCTTGTTGTTCTTAACTGTGATATACATGTCTGCTGGTTTTAGTGGTTCATTTTGAATTAACACTCGTCGTACATGCTGCAGTTGGAGCTGAGGCTGATGATGATAGGATTCAACTACTACTCTCTCAAGTTGAGGGCAAAGATATCACTGAGTTGATTGCTGCCGGCAGAGAAAAATTGGCTTCAGTACCTGCTGGTGGAGGTGCTGCTTGTGCAGTTGCTGCACCTGGTGGTGGCGGTGCTGCACCTGCTGCTGAGGAGAAGAAGGAAGAAAAGAAAGTGGAAGAAAAAGAAGAGTCAGACGATGACATGGGTTTCAGTCTTTTCGATTAGAAGTCGAAGAAATCAGTTTATGAAGTATCCCCTTTTCCATTTGTTGTTCCCCTTGAGAGTGTATTTTAGGAGGTTTATTGTCTACTTACAGATTTTGCTTGAACTTAGAATTTTCATGGAAAACATTTGCAAACAGTTGAAATTATAATATGTATTTCAAATGTTCAGCTTGGTTCAAT</genome_strand>
        <mrna_strand>CAGGCGGAGGCTCACTTTGCTTAAAATCTCCACA.........................................................................................AGAAGAGAAGATGAAGGTTATCGCCGCTTACTTGTTGGCCGTCTTGGGTGGCAACACCTCCCCTTCAGAGAAGGATTTGAAGAAAATCCTTGCATCTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAGCTGAGGCTGATGATGATAGGATTCAACTACTACTCTCTCAAGTTGAGGGCAAAGATATCACTGAGTTGATTGCTGCCGGCAGAGAAAAATTGGCTTCAGTACCTGCTGGTGGAGGTGCTGCTTGTGCAGTTGCTGCACCTGGTGGTGGCGGTGCTGCACCTGCTGCTGAGGAGAAGAAGGAAGAAAAGAAAGTGGAAGAAAAAGAAGAGTCAGACGATGACATGGGTTTCAGTCTTTTCGATTAGAAGTCGAAGAAATCAGTTTATGAAGTATCCCCTTTTCCATTTGTTGTTCCCCTTGAGAGTGTATTTTAGGAGGTTTATTGTCTACTTACAGATTTTGCTTGAACTTAGAATTTTCATGGAAAACATTTGCAAACAGTTGAAATTATAATATGTATTTCAAATGTTTAACTTGGTTCAAN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E724098" ref_strand="+" ref_description="SGN-E724098 [FC23AC05]">
      <seq>attcggaggctcactttgcttaaaatctccacaagaagagaagatgaaggttatcgccgcttacttgttggccgtcttgggtggcaacacctccccttcagagaaggatttgaagaaaatccttgcatctgttggagctgaggctgatgatgataggattcaactactactctctcaagttgagggcaaagatatcactgagttgattgctgccggcagagaaaaattggcttcagtacctgctggtgaaggtgctgcttgtgcagttgctgcacctggtggtggcggtgctgcacctgctgctgaggagaagaaggaagaaaagaaagtggaagaaaaagaagagtcaaacgatgacatgggtttcagtcttttcgattagaagtcgaagaaatcagtttatgaagtatccccttttccatttgttgttccccttgagagtgtattttaggaggtttattgtctacttacagattttgcttgaacttagaattttcatggaaaacatttgcaaacagttgaaattataatatgtatttctaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0099A03.1" temp_strand="+" temp_description="C06SLm0099A03.1  AC226730.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0099A03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="21032" stop="23254"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21332" g_stop="21364" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21365" i_stop="21453" i_length="89">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21454" g_stop="21551" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="131" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21552" i_stop="22542" i_length="991">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.511" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22543" g_stop="22953" g_length="411"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="542" r_length="411" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="543" polyA_stop="553"/>
      <MATCH_line gen_id="C06SLm0099A03.1" gen_strand="+" ref_id="SGN-E724098" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>542</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0099A03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E724098" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21332" e_stop="21364"/>
          <exon e_start="21454" e_stop="21551"/>
          <exon e_start="22543" e_stop="22953"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCGGAGGCTCACTTTGCTTAAAATCTCCACAGTACTTTCTCCCTCTCAATTTTCTATTGTTCGTAGTTTATTTTCTGCTCTTTATCTGAATTTTTTGTTTGTTGTGTTAATTTTGATCAGAGAAGAGAAGATGAAGGTTATCGCCGCTTACTTGTTGGCCGTCTTGGGTGGCAACACCTCCCCTTCAGAGAAGGATTTGAAGAAAATCCTTGCATCTGGTACGACCTTAGAGCCCATCTTACGGTTTTGTTGCATATGGATCCGAAATGTGTTGCCATTTATATATAACTCTATAGCGATTGATACGTGAAGTTATTTATTAGTATGTCTATGTAGTTGGTTTATGTGCCTAAATTACTTGTGCGATTTAGCTCAATTGCTAGAGATTAGATAATATTAGCGACAATGAGAGAAGTGCCAGCTTATATTGTGACAATTTTACTTGTGATTGTAATAGAGGTAGCTGAAGAAAATATTGTAGGAATGGTGAAAAAATAGTTTGGTAGAGATTTTTCAGAAATTGGAATTGTTTGAAGTGTGTGAAAGTTATATACTAGTTCATATAAGTGAATTAGGGTTAAATATTTTGGGATCTAGGGAAACCCTTGAATGCCGAGTGTGTAAATTGGGACTGAAGAGTAGTTAGGGGTTATGGAATAGCATCAAGTTAAACTCGTTCCTTGCCTTCGTTCAAGTTACCAGGTTTAGTAGTGGCTATTATGACCATGGGTAAAGTTTATTATTTTCGTTTTTCATGGTTCTCAAAGTAAGTTTGAGTTAGTCTGCAATGATGCCTGCGTAAGTTTATCCGTCTTGTGCCCTACCTGCTTGACCTGTCTGGAAGAAAAGTACACTGTAATACTTGTTTTCTTTTGCATTAAGAACCCTGCCATAATTGATTCAACTTCAAATATCGAAAGTTGATGCAATCTAATCACCTTGATGCTATTGTGTATTATTCTATATTGGGTTTTCTCTCTGAAGTATCTTAAACTGATTACATGTAATTTAGTTGATCCTACTGAACTAGAATATATTGAATCCCGAATTTCACTGTTTTTATGTTTTGTCTTGTATGTAACTGGCTATACGTAATTAGGTTCATGCTCCCATAATAAACTGTGCTGGCTTGTTGTTCTTAACTGTGATATACATGTCTGCTGGTTTTAGTGGTTCATTTTGAATTAACACTCGTCGTACATGCTGCAGTTGGAGCTGAGGCTGATGATGATAGGATTCAACTACTACTCTCTCAAGTTGAGGGCAAAGATATCACTGAGTTGATTGCTGCCGGCAGAGAAAAATTGGCTTCAGTACCTGCTGGTGGAGGTGCTGCTTGTGCAGTTGCTGCACCTGGTGGTGGCGGTGCTGCACCTGCTGCTGAGGAGAAGAAGGAAGAAAAGAAAGTGGAAGAAAAAGAAGAGTCAGACGATGACATGGGTTTCAGTCTTTTCGATTAGAAGTCGAAGAAATCAGTTTATGAAGTATCCCCTTTTCCATTTGTTGTTCCCCTTGAGAGTGTATTTTAGGAGGTTTATTGTCTACTTACAGATTTTGCTTGAACTTAGAATTTTCATGGAAAACATTTGCAAACAGTTGAAATTATAATATGTATTTCAA</genome_strand>
        <mrna_strand>ATTCGGAGGCTCACTTTGCTTAAAATCTCCACA.........................................................................................AGAAGAGAAGATGAAGGTTATCGCCGCTTACTTGTTGGCCGTCTTGGGTGGCAACACCTCCCCTTCAGAGAAGGATTTGAAGAAAATCCTTGCATCTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAGCTGAGGCTGATGATGATAGGATTCAACTACTACTCTCTCAAGTTGAGGGCAAAGATATCACTGAGTTGATTGCTGCCGGCAGAGAAAAATTGGCTTCAGTACCTGCTGGTGAAGGTGCTGCTTGTGCAGTTGCTGCACCTGGTGGTGGCGGTGCTGCACCTGCTGCTGAGGAGAAGAAGGAAGAAAAGAAAGTGGAAGAAAAAGAAGAGTCAAACGATGACATGGGTTTCAGTCTTTTCGATTAGAAGTCGAAGAAATCAGTTTATGAAGTATCCCCTTTTCCATTTGTTGTTCCCCTTGAGAGTGTATTTTAGGAGGTTTATTGTCTACTTACAGATTTTGCTTGAACTTAGAATTTTCATGGAAAACATTTGCAAACAGTTGAAATTATAATATGTATTTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E557959" ref_strand="+" ref_description="SGN-E557959 [16841]">
      <seq>tgaaggctcaatttgctcaaaatctccaaaaaaagagaaaatgaaggttatcgccgcttacttgttggccgtcttaggtggcaacacctgcccttcagagaaggatttgaagaaaatccttggcatctgttggagctgaggctgatgatgataggattcaacttcttctctctcaagttgagggcaaagatatcactgagctgattgctgccggcagagaaaagttggcttcagtacctgctggtggaggtgctgcttgtgcagttgctgcacctggtggtggcggtgctgctgcacctgctgctgcggagaagaaggaagaaaagaaagtggaagaaaaagaggagtcagatgatgacatgggcttcagtcttttcgattagaagaagtcgaagaattcagtttatgaagtgttgtccccttttccatttgttgttccccttgagtgtattttaggaggtttattgctacttacagattttgcttgaacttagaattttcatggaaaaacattggtaaacagttgaaattataatatgtatttcaacatgttcagcgttggttccaatatatctatccccttttgtatctttacgtatatttag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0099A03.1" temp_strand="+" temp_description="C06SLm0099A03.1  AC226730.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0099A03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="21152" stop="23295"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21335" g_stop="21364" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="0.833"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21365" i_stop="21453" i_length="89">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.993" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21454" g_stop="21551" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="129" r_length="99" r_score="0.939"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21552" i_stop="22542" i_length="991">
            <donor d_prob="0.972" d_score="0.94"/>
            <acceptor a_prob="0.511" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22543" g_stop="22988" g_length="446"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="586" r_length="457" r_score="0.901"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0099A03.1" gen_strand="+" ref_id="SGN-E557959" ref_strand="+">
        <total_alignment_score>0.908</total_alignment_score>
        <cumulative_length_of_scored_exons>574</cumulative_length_of_scored_exons>
        <coverage percentage="0.949" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0099A03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E557959" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21335" e_stop="21364"/>
          <exon e_start="21454" e_stop="21551"/>
          <exon e_start="22543" e_stop="22988"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGAGGCTCACTTTGCTTAAAATCTCCACAGTACTTTCTCCCTCTCAATTTTCTATTGTTCGTAGTTTATTTTCTGCTCTTTATCTGAATTTTTTGTTTGTTGTGTTAATTTTGATCAGAGAAGAGAAGATGAAGGTTATCGCCGCTTACTTGTTGGCCGTCTTGGGTGGCAACACCTCCCCTTCAGAGAAGGATTTGAAGAAAATCCTT-GCATCTGGTACGACCTTAGAGCCCATCTTACGGTTTTGTTGCATATGGATCCGAAATGTGTTGCCATTTATATATAACTCTATAGCGATTGATACGTGAAGTTATTTATTAGTATGTCTATGTAGTTGGTTTATGTGCCTAAATTACTTGTGCGATTTAGCTCAATTGCTAGAGATTAGATAATATTAGCGACAATGAGAGAAGTGCCAGCTTATATTGTGACAATTTTACTTGTGATTGTAATAGAGGTAGCTGAAGAAAATATTGTAGGAATGGTGAAAAAATAGTTTGGTAGAGATTTTTCAGAAATTGGAATTGTTTGAAGTGTGTGAAAGTTATATACTAGTTCATATAAGTGAATTAGGGTTAAATATTTTGGGATCTAGGGAAACCCTTGAATGCCGAGTGTGTAAATTGGGACTGAAGAGTAGTTAGGGGTTATGGAATAGCATCAAGTTAAACTCGTTCCTTGCCTTCGTTCAAGTTACCAGGTTTAGTAGTGGCTATTATGACCATGGGTAAAGTTTATTATTTTCGTTTTTCATGGTTCTCAAAGTAAGTTTGAGTTAGTCTGCAATGATGCCTGCGTAAGTTTATCCGTCTTGTGCCCTACCTGCTTGACCTGTCTGGAAGAAAAGTACACTGTAATACTTGTTTTCTTTTGCATTAAGAACCCTGCCATAATTGATTCAACTTCAAATATCGAAAGTTGATGCAATCTAATCACCTTGATGCTATTGTGTATTATTCTATATTGGGTTTTCTCTCTGAAGTATCTTAAACTGATTACATGTAATTTAGTTGATCCTACTGAACTAGAATATATTGAATCCCGAATTTCACTGTTTTTATGTTTTGTCTTGTATGTAACTGGCTATACGTAATTAGGTTCATGCTCCCATAATAAACTGTGCTGGCTTGTTGTTCTTAACTGTGATATACATGTCTGCTGGTTTTAGTGGTTCATTTTGAATTAACACTCGTCGTACATGCTGCAGTTGGAGCTGAGGCTGATGATGATAGGATTCAACTACTACTCTCTCAAGTTGAGGGCAAAGATATCACTGAGTTGATTGCTGCCGGCAGAGAAAAATTGGCTTCAGTACCTGCTGGTGGAGGTGCTGCTTGTGCAGTTGCTGCACCTGGTGGTGGC-G-G-TGCTGCACCTGCTGCTGAGGAGAAGAAGGAAGAAAAGAAAGTGGAAGAAAAAGAAGAGTCAGACGATGACATGGGTTTCAGTCTTTTCGATT---AGAAGTCGAAGAAATCAGTTTATGAA--G-TATCCCCTTTTCCATTTGTTGTTCCCCTTGAGAGTGTATTTTAGGAGGTTTATTGTCTACTTACAGATTTTGCTTGAACTTAGAATTTTCATGG-AAAACATTTGCAAACAGTTGAAATTATAATATGTATTTCAA-ATGTTCAGC-TTGGTT-CAATATATCTA-CCCTTTTTG</genome_strand>
        <mrna_strand>TGAAGGCTCAATTTGCTCAAAATCTCCAAA.........................................................................................AAAAGAGAAAATGAAGGTTATCGCCGCTTACTTGTTGGCCGTCTTAGGTGGCAACACCTGCCCTTCAGAGAAGGATTTGAAGAAAATCCTTGGCATCTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAGCTGAGGCTGATGATGATAGGATTCAACTTCTTCTCTCTCAAGTTGAGGGCAAAGATATCACTGAGCTGATTGCTGCCGGCAGAGAAAAGTTGGCTTCAGTACCTGCTGGTGGAGGTGCTGCTTGTGCAGTTGCTGCACCTGGTGGTGGCGGTGCTGCTGCACCTGCTGCTGCGGAGAAGAAGGAAGAAAAGAAAGTGGAAGAAAAAGAGGAGTCAGATGATGACATGGGCTTCAGTCTTTTCGATTAGAAGAAGTCGAAGAATTCAGTTTATGAAGTGTTGTCCCCTTTTCCATTTGTTGTTCCCCTT--GAGTGTATTTTAGGAGGTTTATTG-CTACTTACAGATTTTGCTTGAACTTAGAATTTTCATGGAAAAACATTGGTAAACAGTTGAAATTATAATATGTATTTCAACATGTTCAGCGTTGGTTCCAATATATCTATCCCCTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E587548" ref_strand="-" ref_description="SGN-E587548 [41082]">
      <seq>gaaggctcaatttgctcaaaatctccaaaaaaaagagaaaatgaaggttatcgccgcttacttgttggccgtcttaggtggcaacacctgcccttcagagaaggatttgaagaaaatccttgcatctgttggagctgaggctgatgatgataggattcaacttcttctctctcaagttgagggcaaagatatcactgagctgattgctgccggcagagaaaagttggcttcagtacctgctggtggaggtgctgcttgtgcagttgctgcacctggtggtggcggtgctgctgcacctgctgctgcggagaagaaggaagaaaagaaagtggaagaaaaagaggagtcagatgatgacatgggcttcagtcttttcgattagaagaagtcgaagaattcagtttatgaagtgttgtccccttttccatttgttgttccccttgagtgtattttaggaggtttattgctacttacagattttgcttgaacttagaattttcatggaaaacattggtaaacagttgaaattataatatgtatttcaaatgttcagcttggttcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0099A03.1" temp_strand="+" temp_description="C06SLm0099A03.1  AC226730.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0099A03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="21152" stop="23275"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21336" g_stop="21364" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="0.793"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21365" i_stop="21453" i_length="89">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.993" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21454" g_stop="21551" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="128" r_length="98" r_score="0.959"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21552" i_stop="22542" i_length="991">
            <donor d_prob="0.972" d_score="0.98"/>
            <acceptor a_prob="0.511" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22543" g_stop="22970" g_length="428"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="562" r_length="434" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="563" polyA_stop="593"/>
      <MATCH_line gen_id="C06SLm0099A03.1" gen_strand="+" ref_id="SGN-E587548" ref_strand="-">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="0.936" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0099A03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E587548" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="21336" e_stop="21364"/>
          <exon e_start="21454" e_stop="21551"/>
          <exon e_start="22543" e_stop="22970"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGGCTCACTTTGCTTAAAATCTCC-ACAGTACTTTCTCCCTCTCAATTTTCTATTGTTCGTAGTTTATTTTCTGCTCTTTATCTGAATTTTTTGTTTGTTGTGTTAATTTTGATCAGAGAAGAGAAGATGAAGGTTATCGCCGCTTACTTGTTGGCCGTCTTGGGTGGCAACACCTCCCCTTCAGAGAAGGATTTGAAGAAAATCCTTGCATCTGGTACGACCTTAGAGCCCATCTTACGGTTTTGTTGCATATGGATCCGAAATGTGTTGCCATTTATATATAACTCTATAGCGATTGATACGTGAAGTTATTTATTAGTATGTCTATGTAGTTGGTTTATGTGCCTAAATTACTTGTGCGATTTAGCTCAATTGCTAGAGATTAGATAATATTAGCGACAATGAGAGAAGTGCCAGCTTATATTGTGACAATTTTACTTGTGATTGTAATAGAGGTAGCTGAAGAAAATATTGTAGGAATGGTGAAAAAATAGTTTGGTAGAGATTTTTCAGAAATTGGAATTGTTTGAAGTGTGTGAAAGTTATATACTAGTTCATATAAGTGAATTAGGGTTAAATATTTTGGGATCTAGGGAAACCCTTGAATGCCGAGTGTGTAAATTGGGACTGAAGAGTAGTTAGGGGTTATGGAATAGCATCAAGTTAAACTCGTTCCTTGCCTTCGTTCAAGTTACCAGGTTTAGTAGTGGCTATTATGACCATGGGTAAAGTTTATTATTTTCGTTTTTCATGGTTCTCAAAGTAAGTTTGAGTTAGTCTGCAATGATGCCTGCGTAAGTTTATCCGTCTTGTGCCCTACCTGCTTGACCTGTCTGGAAGAAAAGTACACTGTAATACTTGTTTTCTTTTGCATTAAGAACCCTGCCATAATTGATTCAACTTCAAATATCGAAAGTTGATGCAATCTAATCACCTTGATGCTATTGTGTATTATTCTATATTGGGTTTTCTCTCTGAAGTATCTTAAACTGATTACATGTAATTTAGTTGATCCTACTGAACTAGAATATATTGAATCCCGAATTTCACTGTTTTTATGTTTTGTCTTGTATGTAACTGGCTATACGTAATTAGGTTCATGCTCCCATAATAAACTGTGCTGGCTTGTTGTTCTTAACTGTGATATACATGTCTGCTGGTTTTAGTGGTTCATTTTGAATTAACACTCGTCGTACATGCTGCAGTTGGAGCTGAGGCTGATGATGATAGGATTCAACTACTACTCTCTCAAGTTGAGGGCAAAGATATCACTGAGTTGATTGCTGCCGGCAGAGAAAAATTGGCTTCAGTACCTGCTGGTGGAGGTGCTGCTTGTGCAGTTGCTGCACCTGGTGGTGGC-G-G-TGCTGCACCTGCTGCTGAGGAGAAGAAGGAAGAAAAGAAAGTGGAAGAAAAAGAAGAGTCAGACGATGACATGGGTTTCAGTCTTTTCGATT---AGAAGTCGAAGAAATCAGTTTATGAA--G-TATCCCCTTTTCCATTTGTTGTTCCCCTTGAGAGTGTATTTTAGGAGGTTTATTGTCTACTTACAGATTTTGCTTGAACTTAGAATTTTCATGGAAAACATTTGCAAACAGTTGAAATTATAATATGTATTTCAAATGTTCAGCTTGGTTCA</genome_strand>
        <mrna_strand>GAAGGCTCAATTTGCTCAAAATCTCCAAAA.........................................................................................AAAAGAGAAAATGAAGGTTATCGCCGCTTACTTGTTGGCCGTCTTAGGTGGCAACACCTGCCCTTCAGAGAAGGATTTGAAGAAAATCCTTGCATCTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAGCTGAGGCTGATGATGATAGGATTCAACTTCTTCTCTCTCAAGTTGAGGGCAAAGATATCACTGAGCTGATTGCTGCCGGCAGAGAAAAGTTGGCTTCAGTACCTGCTGGTGGAGGTGCTGCTTGTGCAGTTGCTGCACCTGGTGGTGGCGGTGCTGCTGCACCTGCTGCTGCGGAGAAGAAGGAAGAAAAGAAAGTGGAAGAAAAAGAGGAGTCAGATGATGACATGGGCTTCAGTCTTTTCGATTAGAAGAAGTCGAAGAATTCAGTTTATGAAGTGTTGTCCCCTTTTCCATTTGTTGTTCCCCTT--GAGTGTATTTTAGGAGGTTTATTG-CTACTTACAGATTTTGCTTGAACTTAGAATTTTCATGGAAAACATTGGTAAACAGTTGAAATTATAATATGTATTTCAAATGTTCAGCTTGGTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E341231" ref_strand="+" ref_description="SGN-E341231 [cTOE-22-E6]">
      <seq>gaggctcactttgcttaaaatctccacaagaagagaagatgaaggttatcgccgcttacttgttggccgtcttgggtggcaacacctccccttcagagaaggatttgaagaaaatccttgcatctgttggagctgaggctgatgatgataggattcaactactactctctcaagttgagggcaaagatatcactgagttgattgctgccggcagagaaaaattggcttcagtacctgctggtggaggtgctgcttgtgcagttgctgcacctggtggtggcggtgctgcacctgctgctgaggagaagaaggaagaaaagaaagtggaagaaaaagaagagtcagacgatgacatgggtttcagtcttttcgattagaagtcgaagaaatcagtttatgaagta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0099A03.1" temp_strand="+" temp_description="C06SLm0099A03.1  AC226730.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0099A03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="21037" stop="23120"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21337" g_stop="21364" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="28" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21365" i_stop="21453" i_length="89">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21454" g_stop="21551" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="126" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21552" i_stop="22542" i_length="991">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.511" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22543" g_stop="22820" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="404" r_length="278" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0099A03.1" gen_strand="+" ref_id="SGN-E341231" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>404</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0099A03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E341231" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21337" e_stop="21364"/>
          <exon e_start="21454" e_stop="21551"/>
          <exon e_start="22543" e_stop="22820"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGCTCACTTTGCTTAAAATCTCCACAGTACTTTCTCCCTCTCAATTTTCTATTGTTCGTAGTTTATTTTCTGCTCTTTATCTGAATTTTTTGTTTGTTGTGTTAATTTTGATCAGAGAAGAGAAGATGAAGGTTATCGCCGCTTACTTGTTGGCCGTCTTGGGTGGCAACACCTCCCCTTCAGAGAAGGATTTGAAGAAAATCCTTGCATCTGGTACGACCTTAGAGCCCATCTTACGGTTTTGTTGCATATGGATCCGAAATGTGTTGCCATTTATATATAACTCTATAGCGATTGATACGTGAAGTTATTTATTAGTATGTCTATGTAGTTGGTTTATGTGCCTAAATTACTTGTGCGATTTAGCTCAATTGCTAGAGATTAGATAATATTAGCGACAATGAGAGAAGTGCCAGCTTATATTGTGACAATTTTACTTGTGATTGTAATAGAGGTAGCTGAAGAAAATATTGTAGGAATGGTGAAAAAATAGTTTGGTAGAGATTTTTCAGAAATTGGAATTGTTTGAAGTGTGTGAAAGTTATATACTAGTTCATATAAGTGAATTAGGGTTAAATATTTTGGGATCTAGGGAAACCCTTGAATGCCGAGTGTGTAAATTGGGACTGAAGAGTAGTTAGGGGTTATGGAATAGCATCAAGTTAAACTCGTTCCTTGCCTTCGTTCAAGTTACCAGGTTTAGTAGTGGCTATTATGACCATGGGTAAAGTTTATTATTTTCGTTTTTCATGGTTCTCAAAGTAAGTTTGAGTTAGTCTGCAATGATGCCTGCGTAAGTTTATCCGTCTTGTGCCCTACCTGCTTGACCTGTCTGGAAGAAAAGTACACTGTAATACTTGTTTTCTTTTGCATTAAGAACCCTGCCATAATTGATTCAACTTCAAATATCGAAAGTTGATGCAATCTAATCACCTTGATGCTATTGTGTATTATTCTATATTGGGTTTTCTCTCTGAAGTATCTTAAACTGATTACATGTAATTTAGTTGATCCTACTGAACTAGAATATATTGAATCCCGAATTTCACTGTTTTTATGTTTTGTCTTGTATGTAACTGGCTATACGTAATTAGGTTCATGCTCCCATAATAAACTGTGCTGGCTTGTTGTTCTTAACTGTGATATACATGTCTGCTGGTTTTAGTGGTTCATTTTGAATTAACACTCGTCGTACATGCTGCAGTTGGAGCTGAGGCTGATGATGATAGGATTCAACTACTACTCTCTCAAGTTGAGGGCAAAGATATCACTGAGTTGATTGCTGCCGGCAGAGAAAAATTGGCTTCAGTACCTGCTGGTGGAGGTGCTGCTTGTGCAGTTGCTGCACCTGGTGGTGGCGGTGCTGCACCTGCTGCTGAGGAGAAGAAGGAAGAAAAGAAAGTGGAAGAAAAAGAAGAGTCAGACGATGACATGGGTTTCAGTCTTTTCGATTAGAAGTCGAAGAAATCAGTTTATGAAGTA</genome_strand>
        <mrna_strand>GAGGCTCACTTTGCTTAAAATCTCCACA.........................................................................................AGAAGAGAAGATGAAGGTTATCGCCGCTTACTTGTTGGCCGTCTTGGGTGGCAACACCTCCCCTTCAGAGAAGGATTTGAAGAAAATCCTTGCATCTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAGCTGAGGCTGATGATGATAGGATTCAACTACTACTCTCTCAAGTTGAGGGCAAAGATATCACTGAGTTGATTGCTGCCGGCAGAGAAAAATTGGCTTCAGTACCTGCTGGTGGAGGTGCTGCTTGTGCAGTTGCTGCACCTGGTGGTGGCGGTGCTGCACCTGCTGCTGAGGAGAAGAAGGAAGAAAAGAAAGTGGAAGAAAAAGAAGAGTCAGACGATGACATGGGTTTCAGTCTTTTCGATTAGAAGTCGAAGAAATCAGTTTATGAAGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E309727" ref_strand="+" ref_description="SGN-E309727 [cLEY-26-D5]">
      <seq>ctcactttgcttaaaatctccacaagaagagaagatgaaggttatcgccgcttacttgttggccgtcttgggtggcaacacctccccttcagagaaggatttgaagaaaatccttgcatctgttggagctgaggctgatgatgataggattcaactactactctctcaagttgagggcaaagatatcactgagttgattgctgccggcagagaaaaattggcttcagtacctgctggtggaggtgctgcttgtgcagttgctgcacctggtggtggcggtgctgcacctgctgctgaggagaagaaggaagaaaagaaagtggaagaaaaagaagagtcagacgatgacatgggtttcagtcttttcgattagaagtcgaagaaatcagtttatgaagtatccccttttccatttgttgttccccttgagagtgtattttaggaggtttattgtctacttacagattttgcttgaacttagaattttcatggaaaacatttgcaaacagttgaaattataatatgtatttcaaatgttcagcttggttcaatatatctaccctttttgatcttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0099A03.1" temp_strand="+" temp_description="C06SLm0099A03.1  AC226730.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0099A03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="21041" stop="23304"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21341" g_stop="21364" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="24" r_length="24" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21365" i_stop="21453" i_length="89">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21454" g_stop="21551" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="122" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21552" i_stop="22542" i_length="991">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.511" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22543" g_stop="23004" g_length="462"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="584" r_length="462" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0099A03.1" gen_strand="+" ref_id="SGN-E309727" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>584</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0099A03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E309727" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21341" e_stop="21364"/>
          <exon e_start="21454" e_stop="21551"/>
          <exon e_start="22543" e_stop="23004"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCACTTTGCTTAAAATCTCCACAGTACTTTCTCCCTCTCAATTTTCTATTGTTCGTAGTTTATTTTCTGCTCTTTATCTGAATTTTTTGTTTGTTGTGTTAATTTTGATCAGAGAAGAGAAGATGAAGGTTATCGCCGCTTACTTGTTGGCCGTCTTGGGTGGCAACACCTCCCCTTCAGAGAAGGATTTGAAGAAAATCCTTGCATCTGGTACGACCTTAGAGCCCATCTTACGGTTTTGTTGCATATGGATCCGAAATGTGTTGCCATTTATATATAACTCTATAGCGATTGATACGTGAAGTTATTTATTAGTATGTCTATGTAGTTGGTTTATGTGCCTAAATTACTTGTGCGATTTAGCTCAATTGCTAGAGATTAGATAATATTAGCGACAATGAGAGAAGTGCCAGCTTATATTGTGACAATTTTACTTGTGATTGTAATAGAGGTAGCTGAAGAAAATATTGTAGGAATGGTGAAAAAATAGTTTGGTAGAGATTTTTCAGAAATTGGAATTGTTTGAAGTGTGTGAAAGTTATATACTAGTTCATATAAGTGAATTAGGGTTAAATATTTTGGGATCTAGGGAAACCCTTGAATGCCGAGTGTGTAAATTGGGACTGAAGAGTAGTTAGGGGTTATGGAATAGCATCAAGTTAAACTCGTTCCTTGCCTTCGTTCAAGTTACCAGGTTTAGTAGTGGCTATTATGACCATGGGTAAAGTTTATTATTTTCGTTTTTCATGGTTCTCAAAGTAAGTTTGAGTTAGTCTGCAATGATGCCTGCGTAAGTTTATCCGTCTTGTGCCCTACCTGCTTGACCTGTCTGGAAGAAAAGTACACTGTAATACTTGTTTTCTTTTGCATTAAGAACCCTGCCATAATTGATTCAACTTCAAATATCGAAAGTTGATGCAATCTAATCACCTTGATGCTATTGTGTATTATTCTATATTGGGTTTTCTCTCTGAAGTATCTTAAACTGATTACATGTAATTTAGTTGATCCTACTGAACTAGAATATATTGAATCCCGAATTTCACTGTTTTTATGTTTTGTCTTGTATGTAACTGGCTATACGTAATTAGGTTCATGCTCCCATAATAAACTGTGCTGGCTTGTTGTTCTTAACTGTGATATACATGTCTGCTGGTTTTAGTGGTTCATTTTGAATTAACACTCGTCGTACATGCTGCAGTTGGAGCTGAGGCTGATGATGATAGGATTCAACTACTACTCTCTCAAGTTGAGGGCAAAGATATCACTGAGTTGATTGCTGCCGGCAGAGAAAAATTGGCTTCAGTACCTGCTGGTGGAGGTGCTGCTTGTGCAGTTGCTGCACCTGGTGGTGGCGGTGCTGCACCTGCTGCTGAGGAGAAGAAGGAAGAAAAGAAAGTGGAAGAAAAAGAAGAGTCAGACGATGACATGGGTTTCAGTCTTTTCGATTAGAAGTCGAAGAAATCAGTTTATGAAGTATCCCCTTTTCCATTTGTTGTTCCCCTTGAGAGTGTATTTTAGGAGGTTTATTGTCTACTTACAGATTTTGCTTGAACTTAGAATTTTCATGGAAAACATTTGCAAACAGTTGAAATTATAATATGTATTTCAAATGTTCAGCTTGGTTCAATATATCTACCCTTTTTGATCTTACAATATTAAA</genome_strand>
        <mrna_strand>CTCACTTTGCTTAAAATCTCCACA.........................................................................................AGAAGAGAAGATGAAGGTTATCGCCGCTTACTTGTTGGCCGTCTTGGGTGGCAACACCTCCCCTTCAGAGAAGGATTTGAAGAAAATCCTTGCATCTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAGCTGAGGCTGATGATGATAGGATTCAACTACTACTCTCTCAAGTTGAGGGCAAAGATATCACTGAGTTGATTGCTGCCGGCAGAGAAAAATTGGCTTCAGTACCTGCTGGTGGAGGTGCTGCTTGTGCAGTTGCTGCACCTGGTGGTGGCGGTGCTGCACCTGCTGCTGAGGAGAAGAAGGAAGAAAAGAAAGTGGAAGAAAAAGAAGAGTCAGACGATGACATGGGTTTCAGTCTTTTCGATTAGAAGTCGAAGAAATCAGTTTATGAAGTATCCCCTTTTCCATTTGTTGTTCCCCTTGAGAGTGTATTTTAGGAGGTTTATTGTCTACTTACAGATTTTGCTTGAACTTAGAATTTTCATGGAAAACATTTGCAAACAGTTGAAATTATAATATGTATTTCAAATGTTCAGCTTGGTTCAATATATCTACCCTTTTTGATCTTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E577681" ref_strand="-" ref_description="SGN-E577681 [LE15BG06]">
      <seq>ctcactttgcttaaaatctccacaagaagagaagatgaaggttatcgccgcttacttgttggccgtcttgggtggcaacacctccccttcagagaaggatttgaagaaaatccttgcatctgttggagctgaggctgatgatgataggattcaactactactctctcaagttgagggcaaagatatcactgagttgattgctgccggcagagaaaaattggcttcagtacctgctggtggaggtgctgcttgtgcagttgctgcacctggtggtggcggtgctgcacctgctgctgaggagaagaaggaagaaaagaaagtggaagaaaaagaagagtcagacgatgacatgggtttcagtcttttcgattagaagtcgaagaaatcagtttatgaagtatccccttttccatttgttgttccccttgagagtgtattttaggaggtttattgtctacttacagattttgcttgaacttagaattttcatggaaaacatttgcaaacagttgaaattataatatgtatttcaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0099A03.1" temp_strand="+" temp_description="C06SLm0099A03.1  AC226730.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0099A03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="21041" stop="23254"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21341" g_stop="21364" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="24" r_length="24" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21365" i_stop="21453" i_length="89">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21454" g_stop="21551" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="122" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21552" i_stop="22542" i_length="991">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.511" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22543" g_stop="22954" g_length="412"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="534" r_length="412" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0099A03.1" gen_strand="+" ref_id="SGN-E577681" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0099A03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E577681" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="21341" e_stop="21364"/>
          <exon e_start="21454" e_stop="21551"/>
          <exon e_start="22543" e_stop="22954"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCACTTTGCTTAAAATCTCCACAGTACTTTCTCCCTCTCAATTTTCTATTGTTCGTAGTTTATTTTCTGCTCTTTATCTGAATTTTTTGTTTGTTGTGTTAATTTTGATCAGAGAAGAGAAGATGAAGGTTATCGCCGCTTACTTGTTGGCCGTCTTGGGTGGCAACACCTCCCCTTCAGAGAAGGATTTGAAGAAAATCCTTGCATCTGGTACGACCTTAGAGCCCATCTTACGGTTTTGTTGCATATGGATCCGAAATGTGTTGCCATTTATATATAACTCTATAGCGATTGATACGTGAAGTTATTTATTAGTATGTCTATGTAGTTGGTTTATGTGCCTAAATTACTTGTGCGATTTAGCTCAATTGCTAGAGATTAGATAATATTAGCGACAATGAGAGAAGTGCCAGCTTATATTGTGACAATTTTACTTGTGATTGTAATAGAGGTAGCTGAAGAAAATATTGTAGGAATGGTGAAAAAATAGTTTGGTAGAGATTTTTCAGAAATTGGAATTGTTTGAAGTGTGTGAAAGTTATATACTAGTTCATATAAGTGAATTAGGGTTAAATATTTTGGGATCTAGGGAAACCCTTGAATGCCGAGTGTGTAAATTGGGACTGAAGAGTAGTTAGGGGTTATGGAATAGCATCAAGTTAAACTCGTTCCTTGCCTTCGTTCAAGTTACCAGGTTTAGTAGTGGCTATTATGACCATGGGTAAAGTTTATTATTTTCGTTTTTCATGGTTCTCAAAGTAAGTTTGAGTTAGTCTGCAATGATGCCTGCGTAAGTTTATCCGTCTTGTGCCCTACCTGCTTGACCTGTCTGGAAGAAAAGTACACTGTAATACTTGTTTTCTTTTGCATTAAGAACCCTGCCATAATTGATTCAACTTCAAATATCGAAAGTTGATGCAATCTAATCACCTTGATGCTATTGTGTATTATTCTATATTGGGTTTTCTCTCTGAAGTATCTTAAACTGATTACATGTAATTTAGTTGATCCTACTGAACTAGAATATATTGAATCCCGAATTTCACTGTTTTTATGTTTTGTCTTGTATGTAACTGGCTATACGTAATTAGGTTCATGCTCCCATAATAAACTGTGCTGGCTTGTTGTTCTTAACTGTGATATACATGTCTGCTGGTTTTAGTGGTTCATTTTGAATTAACACTCGTCGTACATGCTGCAGTTGGAGCTGAGGCTGATGATGATAGGATTCAACTACTACTCTCTCAAGTTGAGGGCAAAGATATCACTGAGTTGATTGCTGCCGGCAGAGAAAAATTGGCTTCAGTACCTGCTGGTGGAGGTGCTGCTTGTGCAGTTGCTGCACCTGGTGGTGGCGGTGCTGCACCTGCTGCTGAGGAGAAGAAGGAAGAAAAGAAAGTGGAAGAAAAAGAAGAGTCAGACGATGACATGGGTTTCAGTCTTTTCGATTAGAAGTCGAAGAAATCAGTTTATGAAGTATCCCCTTTTCCATTTGTTGTTCCCCTTGAGAGTGTATTTTAGGAGGTTTATTGTCTACTTACAGATTTTGCTTGAACTTAGAATTTTCATGGAAAACATTTGCAAACAGTTGAAATTATAATATGTATTTCAAA</genome_strand>
        <mrna_strand>CTCACTTTGCTTAAAATCTCCACA.........................................................................................AGAAGAGAAGATGAAGGTTATCGCCGCTTACTTGTTGGCCGTCTTGGGTGGCAACACCTCCCCTTCAGAGAAGGATTTGAAGAAAATCCTTGCATCTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAGCTGAGGCTGATGATGATAGGATTCAACTACTACTCTCTCAAGTTGAGGGCAAAGATATCACTGAGTTGATTGCTGCCGGCAGAGAAAAATTGGCTTCAGTACCTGCTGGTGGAGGTGCTGCTTGTGCAGTTGCTGCACCTGGTGGTGGCGGTGCTGCACCTGCTGCTGAGGAGAAGAAGGAAGAAAAGAAAGTGGAAGAAAAAGAAGAGTCAGACGATGACATGGGTTTCAGTCTTTTCGATTAGAAGTCGAAGAAATCAGTTTATGAAGTATCCCCTTTTCCATTTGTTGTTCCCCTTGAGAGTGTATTTTAGGAGGTTTATTGTCTACTTACAGATTTTGCTTGAACTTAGAATTTTCATGGAAAACATTTGCAAACAGTTGAAATTATAATATGTATTTCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E456682" ref_strand="+" ref_description="SGN-E456682 [cSTS-30-A12]">
      <seq>atttgctcaaaatctccaaaaaaagagaaaatgaaggttatcgccgcttacttgttggccgtcttaggtggcaacacctgcccttcagagaaggatttgaagaaaatccttgcatctgttggagctgaggctgatgatgataggattcaacttcttctctctcaagttgagggcaaagatatcactgagctgattgctgccggcagagaaaagttggcttcagtacctgctggtggaggtgctgcttgtgcagttgctgcacctggtggtggcggtgctgctgcacctgctgctgcggagaagaaggaagaaaagaaagtggaagaaaaagaggagtcagatgatgacatgggcttcagtcttttcgattagaagaagtcgaagaattcagtttatgaagtgttgtccccttttccatttgttgttccccttgagtgtattttaggaggtttattgctacttacagattntgcttgaacttagaattttcatggaaaacattggtaaacagttgaaattataatatgtatttcaaatgttcaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0099A03.1" temp_strand="+" temp_description="C06SLm0099A03.1  AC226730.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0099A03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="21152" stop="23260"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21345" g_stop="21364" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="0.850"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21365" i_stop="21453" i_length="89">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.993" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21454" g_stop="21551" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="118" r_length="98" r_score="0.959"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21552" i_stop="22542" i_length="991">
            <donor d_prob="0.972" d_score="0.98"/>
            <acceptor a_prob="0.511" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22543" g_stop="22962" g_length="420"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="544" r_length="426" r_score="0.914"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0099A03.1" gen_strand="+" ref_id="SGN-E456682" ref_strand="+">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>538</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0099A03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E456682" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21345" e_stop="21364"/>
          <exon e_start="21454" e_stop="21551"/>
          <exon e_start="22543" e_stop="22962"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTGCTTAAAATCTCCACAGTACTTTCTCCCTCTCAATTTTCTATTGTTCGTAGTTTATTTTCTGCTCTTTATCTGAATTTTTTGTTTGTTGTGTTAATTTTGATCAGAGAAGAGAAGATGAAGGTTATCGCCGCTTACTTGTTGGCCGTCTTGGGTGGCAACACCTCCCCTTCAGAGAAGGATTTGAAGAAAATCCTTGCATCTGGTACGACCTTAGAGCCCATCTTACGGTTTTGTTGCATATGGATCCGAAATGTGTTGCCATTTATATATAACTCTATAGCGATTGATACGTGAAGTTATTTATTAGTATGTCTATGTAGTTGGTTTATGTGCCTAAATTACTTGTGCGATTTAGCTCAATTGCTAGAGATTAGATAATATTAGCGACAATGAGAGAAGTGCCAGCTTATATTGTGACAATTTTACTTGTGATTGTAATAGAGGTAGCTGAAGAAAATATTGTAGGAATGGTGAAAAAATAGTTTGGTAGAGATTTTTCAGAAATTGGAATTGTTTGAAGTGTGTGAAAGTTATATACTAGTTCATATAAGTGAATTAGGGTTAAATATTTTGGGATCTAGGGAAACCCTTGAATGCCGAGTGTGTAAATTGGGACTGAAGAGTAGTTAGGGGTTATGGAATAGCATCAAGTTAAACTCGTTCCTTGCCTTCGTTCAAGTTACCAGGTTTAGTAGTGGCTATTATGACCATGGGTAAAGTTTATTATTTTCGTTTTTCATGGTTCTCAAAGTAAGTTTGAGTTAGTCTGCAATGATGCCTGCGTAAGTTTATCCGTCTTGTGCCCTACCTGCTTGACCTGTCTGGAAGAAAAGTACACTGTAATACTTGTTTTCTTTTGCATTAAGAACCCTGCCATAATTGATTCAACTTCAAATATCGAAAGTTGATGCAATCTAATCACCTTGATGCTATTGTGTATTATTCTATATTGGGTTTTCTCTCTGAAGTATCTTAAACTGATTACATGTAATTTAGTTGATCCTACTGAACTAGAATATATTGAATCCCGAATTTCACTGTTTTTATGTTTTGTCTTGTATGTAACTGGCTATACGTAATTAGGTTCATGCTCCCATAATAAACTGTGCTGGCTTGTTGTTCTTAACTGTGATATACATGTCTGCTGGTTTTAGTGGTTCATTTTGAATTAACACTCGTCGTACATGCTGCAGTTGGAGCTGAGGCTGATGATGATAGGATTCAACTACTACTCTCTCAAGTTGAGGGCAAAGATATCACTGAGTTGATTGCTGCCGGCAGAGAAAAATTGGCTTCAGTACCTGCTGGTGGAGGTGCTGCTTGTGCAGTTGCTGCACCTGGTGGTGGC-G-G-TGCTGCACCTGCTGCTGAGGAGAAGAAGGAAGAAAAGAAAGTGGAAGAAAAAGAAGAGTCAGACGATGACATGGGTTTCAGTCTTTTCGATT---AGAAGTCGAAGAAATCAGTTTATGAA--G-TATCCCCTTTTCCATTTGTTGTTCCCCTTGAGAGTGTATTTTAGGAGGTTTATTGTCTACTTACAGATTTTGCTTGAACTTAGAATTTTCATGGAAAACATTTGCAAACAGTTGAAATTATAATATGTATTTCAAATGTTCAGC</genome_strand>
        <mrna_strand>ATTTGCTCAAAATCTCCAAA.........................................................................................AAAAGAGAAAATGAAGGTTATCGCCGCTTACTTGTTGGCCGTCTTAGGTGGCAACACCTGCCCTTCAGAGAAGGATTTGAAGAAAATCCTTGCATCTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAGCTGAGGCTGATGATGATAGGATTCAACTTCTTCTCTCTCAAGTTGAGGGCAAAGATATCACTGAGCTGATTGCTGCCGGCAGAGAAAAGTTGGCTTCAGTACCTGCTGGTGGAGGTGCTGCTTGTGCAGTTGCTGCACCTGGTGGTGGCGGTGCTGCTGCACCTGCTGCTGCGGAGAAGAAGGAAGAAAAGAAAGTGGAAGAAAAAGAGGAGTCAGATGATGACATGGGCTTCAGTCTTTTCGATTAGAAGAAGTCGAAGAATTCAGTTTATGAAGTGTTGTCCCCTTTTCCATTTGTTGTTCCCCTT--GAGTGTATTTTAGGAGGTTTATTG-CTACTTACAGATTNTGCTTGAACTTAGAATTTTCATGGAAAACATTGGTAAACAGTTGAAATTATAATATGTATTTCAAATGTTCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E713983" ref_strand="+" ref_description="SGN-E713983 [FB10AG09]">
      <seq>ctttgcttaaaatctccacaagaagagaagatgaaggttatcgccgcttacttgttggccgtcttgggtggcaacacctccccttcagagaaggatttgaagaaaatccttgcatctgttggagctgaggctgatgatgataggattcaactactactctctcaagttgagggcaaagatatcactgagttgattgctgccggcagagaaaaattggcttcagtacctgctggtggaggtgctgcttgtgcagttgctgcacctggtggtggcggtgctgcacctgctgctgaggagaagaaggaagaaaagaaagtggaagaaaaagaagagtcagacgatgacatgggtttcagtcttttcgattagaagtcgaagaaatcagtttatgaagtatccccttttccatttgttgttccccttgagagtgtattttaggaggtttattgtctacttacagattttgcttgaacttagaattttcatggaaaacatttgcaaacagttgaaattataatatgtatttcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0099A03.1" temp_strand="+" temp_description="C06SLm0099A03.1  AC226730.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0099A03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="21045" stop="23254"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21345" g_stop="21364" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21365" i_stop="21453" i_length="89">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21454" g_stop="21551" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="118" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21552" i_stop="22542" i_length="991">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.511" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22543" g_stop="22953" g_length="411"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="529" r_length="411" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="530" polyA_stop="544"/>
      <MATCH_line gen_id="C06SLm0099A03.1" gen_strand="+" ref_id="SGN-E713983" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>529</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0099A03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E713983" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21345" e_stop="21364"/>
          <exon e_start="21454" e_stop="21551"/>
          <exon e_start="22543" e_stop="22953"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTGCTTAAAATCTCCACAGTACTTTCTCCCTCTCAATTTTCTATTGTTCGTAGTTTATTTTCTGCTCTTTATCTGAATTTTTTGTTTGTTGTGTTAATTTTGATCAGAGAAGAGAAGATGAAGGTTATCGCCGCTTACTTGTTGGCCGTCTTGGGTGGCAACACCTCCCCTTCAGAGAAGGATTTGAAGAAAATCCTTGCATCTGGTACGACCTTAGAGCCCATCTTACGGTTTTGTTGCATATGGATCCGAAATGTGTTGCCATTTATATATAACTCTATAGCGATTGATACGTGAAGTTATTTATTAGTATGTCTATGTAGTTGGTTTATGTGCCTAAATTACTTGTGCGATTTAGCTCAATTGCTAGAGATTAGATAATATTAGCGACAATGAGAGAAGTGCCAGCTTATATTGTGACAATTTTACTTGTGATTGTAATAGAGGTAGCTGAAGAAAATATTGTAGGAATGGTGAAAAAATAGTTTGGTAGAGATTTTTCAGAAATTGGAATTGTTTGAAGTGTGTGAAAGTTATATACTAGTTCATATAAGTGAATTAGGGTTAAATATTTTGGGATCTAGGGAAACCCTTGAATGCCGAGTGTGTAAATTGGGACTGAAGAGTAGTTAGGGGTTATGGAATAGCATCAAGTTAAACTCGTTCCTTGCCTTCGTTCAAGTTACCAGGTTTAGTAGTGGCTATTATGACCATGGGTAAAGTTTATTATTTTCGTTTTTCATGGTTCTCAAAGTAAGTTTGAGTTAGTCTGCAATGATGCCTGCGTAAGTTTATCCGTCTTGTGCCCTACCTGCTTGACCTGTCTGGAAGAAAAGTACACTGTAATACTTGTTTTCTTTTGCATTAAGAACCCTGCCATAATTGATTCAACTTCAAATATCGAAAGTTGATGCAATCTAATCACCTTGATGCTATTGTGTATTATTCTATATTGGGTTTTCTCTCTGAAGTATCTTAAACTGATTACATGTAATTTAGTTGATCCTACTGAACTAGAATATATTGAATCCCGAATTTCACTGTTTTTATGTTTTGTCTTGTATGTAACTGGCTATACGTAATTAGGTTCATGCTCCCATAATAAACTGTGCTGGCTTGTTGTTCTTAACTGTGATATACATGTCTGCTGGTTTTAGTGGTTCATTTTGAATTAACACTCGTCGTACATGCTGCAGTTGGAGCTGAGGCTGATGATGATAGGATTCAACTACTACTCTCTCAAGTTGAGGGCAAAGATATCACTGAGTTGATTGCTGCCGGCAGAGAAAAATTGGCTTCAGTACCTGCTGGTGGAGGTGCTGCTTGTGCAGTTGCTGCACCTGGTGGTGGCGGTGCTGCACCTGCTGCTGAGGAGAAGAAGGAAGAAAAGAAAGTGGAAGAAAAAGAAGAGTCAGACGATGACATGGGTTTCAGTCTTTTCGATTAGAAGTCGAAGAAATCAGTTTATGAAGTATCCCCTTTTCCATTTGTTGTTCCCCTTGAGAGTGTATTTTAGGAGGTTTATTGTCTACTTACAGATTTTGCTTGAACTTAGAATTTTCATGGAAAACATTTGCAAACAGTTGAAATTATAATATGTATTTCAA</genome_strand>
        <mrna_strand>CTTTGCTTAAAATCTCCACA.........................................................................................AGAAGAGAAGATGAAGGTTATCGCCGCTTACTTGTTGGCCGTCTTGGGTGGCAACACCTCCCCTTCAGAGAAGGATTTGAAGAAAATCCTTGCATCTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAGCTGAGGCTGATGATGATAGGATTCAACTACTACTCTCTCAAGTTGAGGGCAAAGATATCACTGAGTTGATTGCTGCCGGCAGAGAAAAATTGGCTTCAGTACCTGCTGGTGGAGGTGCTGCTTGTGCAGTTGCTGCACCTGGTGGTGGCGGTGCTGCACCTGCTGCTGAGGAGAAGAAGGAAGAAAAGAAAGTGGAAGAAAAAGAAGAGTCAGACGATGACATGGGTTTCAGTCTTTTCGATTAGAAGTCGAAGAAATCAGTTTATGAAGTATCCCCTTTTCCATTTGTTGTTCCCCTTGAGAGTGTATTTTAGGAGGTTTATTGTCTACTTACAGATTTTGCTTGAACTTAGAATTTTCATGGAAAACATTTGCAAACAGTTGAAATTATAATATGTATTTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E306602" ref_strand="+" ref_description="SGN-E306602 [cLEY-19-C11]">
      <seq>tttgcttttaatcttcacaagaagagaagatgaaggttatcgccgcttacttgttggccgtcttgggtggcaacacctccccttcagagaaggatttgaagaaaatccttgcatctgttggagctgaggctgatgatgataggattcaactactactctctcaagttgagggcaaagatatcactgagttgattgctgccggcagagaaaaattggcttcagtacctgctggtggaggtgctgcttgtgcagttgctgcacctggtggtggcggtgctgcacctgctgctgaggagaagaaggaagaaaagaaagtggaagaaaaagaagagtcagacgatgacatgggtttcagtcttttcgattagaagtcgaagaaatcagtttatgaagtatccccttttccatttgttgttccccttgagagtgtattttaggaggtttattgtctacttacagattttgcttgaacttagaattttcatggaaaacatttgcaaacagttgaaattataatatgtatttcaaatgttaaanaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0099A03.1" temp_strand="+" temp_description="C06SLm0099A03.1  AC226730.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0099A03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="21135" stop="23260"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21346" g_stop="21364" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="19" r_length="19" r_score="0.842"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21365" i_stop="21453" i_length="89">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21454" g_stop="21551" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="117" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21552" i_stop="22542" i_length="991">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.511" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22543" g_stop="22960" g_length="418"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="535" r_length="418" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="536" polyA_stop="548"/>
      <MATCH_line gen_id="C06SLm0099A03.1" gen_strand="+" ref_id="SGN-E306602" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>535</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0099A03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E306602" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21346" e_stop="21364"/>
          <exon e_start="21454" e_stop="21551"/>
          <exon e_start="22543" e_stop="22960"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGCTTAAAATCTCCACAGTACTTTCTCCCTCTCAATTTTCTATTGTTCGTAGTTTATTTTCTGCTCTTTATCTGAATTTTTTGTTTGTTGTGTTAATTTTGATCAGAGAAGAGAAGATGAAGGTTATCGCCGCTTACTTGTTGGCCGTCTTGGGTGGCAACACCTCCCCTTCAGAGAAGGATTTGAAGAAAATCCTTGCATCTGGTACGACCTTAGAGCCCATCTTACGGTTTTGTTGCATATGGATCCGAAATGTGTTGCCATTTATATATAACTCTATAGCGATTGATACGTGAAGTTATTTATTAGTATGTCTATGTAGTTGGTTTATGTGCCTAAATTACTTGTGCGATTTAGCTCAATTGCTAGAGATTAGATAATATTAGCGACAATGAGAGAAGTGCCAGCTTATATTGTGACAATTTTACTTGTGATTGTAATAGAGGTAGCTGAAGAAAATATTGTAGGAATGGTGAAAAAATAGTTTGGTAGAGATTTTTCAGAAATTGGAATTGTTTGAAGTGTGTGAAAGTTATATACTAGTTCATATAAGTGAATTAGGGTTAAATATTTTGGGATCTAGGGAAACCCTTGAATGCCGAGTGTGTAAATTGGGACTGAAGAGTAGTTAGGGGTTATGGAATAGCATCAAGTTAAACTCGTTCCTTGCCTTCGTTCAAGTTACCAGGTTTAGTAGTGGCTATTATGACCATGGGTAAAGTTTATTATTTTCGTTTTTCATGGTTCTCAAAGTAAGTTTGAGTTAGTCTGCAATGATGCCTGCGTAAGTTTATCCGTCTTGTGCCCTACCTGCTTGACCTGTCTGGAAGAAAAGTACACTGTAATACTTGTTTTCTTTTGCATTAAGAACCCTGCCATAATTGATTCAACTTCAAATATCGAAAGTTGATGCAATCTAATCACCTTGATGCTATTGTGTATTATTCTATATTGGGTTTTCTCTCTGAAGTATCTTAAACTGATTACATGTAATTTAGTTGATCCTACTGAACTAGAATATATTGAATCCCGAATTTCACTGTTTTTATGTTTTGTCTTGTATGTAACTGGCTATACGTAATTAGGTTCATGCTCCCATAATAAACTGTGCTGGCTTGTTGTTCTTAACTGTGATATACATGTCTGCTGGTTTTAGTGGTTCATTTTGAATTAACACTCGTCGTACATGCTGCAGTTGGAGCTGAGGCTGATGATGATAGGATTCAACTACTACTCTCTCAAGTTGAGGGCAAAGATATCACTGAGTTGATTGCTGCCGGCAGAGAAAAATTGGCTTCAGTACCTGCTGGTGGAGGTGCTGCTTGTGCAGTTGCTGCACCTGGTGGTGGCGGTGCTGCACCTGCTGCTGAGGAGAAGAAGGAAGAAAAGAAAGTGGAAGAAAAAGAAGAGTCAGACGATGACATGGGTTTCAGTCTTTTCGATTAGAAGTCGAAGAAATCAGTTTATGAAGTATCCCCTTTTCCATTTGTTGTTCCCCTTGAGAGTGTATTTTAGGAGGTTTATTGTCTACTTACAGATTTTGCTTGAACTTAGAATTTTCATGGAAAACATTTGCAAACAGTTGAAATTATAATATGTATTTCAAATGTTCA</genome_strand>
        <mrna_strand>TTTGCTTTTAATCTTCACA.........................................................................................AGAAGAGAAGATGAAGGTTATCGCCGCTTACTTGTTGGCCGTCTTGGGTGGCAACACCTCCCCTTCAGAGAAGGATTTGAAGAAAATCCTTGCATCTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAGCTGAGGCTGATGATGATAGGATTCAACTACTACTCTCTCAAGTTGAGGGCAAAGATATCACTGAGTTGATTGCTGCCGGCAGAGAAAAATTGGCTTCAGTACCTGCTGGTGGAGGTGCTGCTTGTGCAGTTGCTGCACCTGGTGGTGGCGGTGCTGCACCTGCTGCTGAGGAGAAGAAGGAAGAAAAGAAAGTGGAAGAAAAAGAAGAGTCAGACGATGACATGGGTTTCAGTCTTTTCGATTAGAAGTCGAAGAAATCAGTTTATGAAGTATCCCCTTTTCCATTTGTTGTTCCCCTTGAGAGTGTATTTTAGGAGGTTTATTGTCTACTTACAGATTTTGCTTGAACTTAGAATTTTCATGGAAAACATTTGCAAACAGTTGAAATTATAATATGTATTTCAAATGTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E321320" ref_strand="+" ref_description="SGN-E321320 [cTOB-23-H17]">
      <seq>tttgcttaaaatctccacaagaagagaagatgaaggttatcgccgcttacttgttggccgtcttgggtggcaacacctccccttcagagaaggatttgaagaaaatccttgcatctgttggagctgaggctgatgatgataggattcaactactactctctcaagttgagggcaaagatatcactgagttgattgctgccggcagagaaaaattggcttcagtacctgctggtggaggtgctgcttgtgcagttgctgcacctggtggtggcggtgctgcacctgctgctgaggagaagaaggaagaaaagaaagtggaagaaaaagaagagtcagacgatgacatgggtttcagtcttttcgattagaagtcgaagaaatcagtttatgaagtatccccttttccatttgttgttccccttgagagtgtattttaggaggtttattgtctacttacagattttgcttgaacttagaattttcatggaaaacatttgcaaacagttgaaattataatatgtatttcaaatgttcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0099A03.1" temp_strand="+" temp_description="C06SLm0099A03.1  AC226730.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0099A03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="21046" stop="23260"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21346" g_stop="21364" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="19" r_length="19" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21365" i_stop="21453" i_length="89">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21454" g_stop="21551" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="117" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21552" i_stop="22542" i_length="991">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.511" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22543" g_stop="22960" g_length="418"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="535" r_length="418" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0099A03.1" gen_strand="+" ref_id="SGN-E321320" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>535</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0099A03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E321320" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21346" e_stop="21364"/>
          <exon e_start="21454" e_stop="21551"/>
          <exon e_start="22543" e_stop="22960"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGCTTAAAATCTCCACAGTACTTTCTCCCTCTCAATTTTCTATTGTTCGTAGTTTATTTTCTGCTCTTTATCTGAATTTTTTGTTTGTTGTGTTAATTTTGATCAGAGAAGAGAAGATGAAGGTTATCGCCGCTTACTTGTTGGCCGTCTTGGGTGGCAACACCTCCCCTTCAGAGAAGGATTTGAAGAAAATCCTTGCATCTGGTACGACCTTAGAGCCCATCTTACGGTTTTGTTGCATATGGATCCGAAATGTGTTGCCATTTATATATAACTCTATAGCGATTGATACGTGAAGTTATTTATTAGTATGTCTATGTAGTTGGTTTATGTGCCTAAATTACTTGTGCGATTTAGCTCAATTGCTAGAGATTAGATAATATTAGCGACAATGAGAGAAGTGCCAGCTTATATTGTGACAATTTTACTTGTGATTGTAATAGAGGTAGCTGAAGAAAATATTGTAGGAATGGTGAAAAAATAGTTTGGTAGAGATTTTTCAGAAATTGGAATTGTTTGAAGTGTGTGAAAGTTATATACTAGTTCATATAAGTGAATTAGGGTTAAATATTTTGGGATCTAGGGAAACCCTTGAATGCCGAGTGTGTAAATTGGGACTGAAGAGTAGTTAGGGGTTATGGAATAGCATCAAGTTAAACTCGTTCCTTGCCTTCGTTCAAGTTACCAGGTTTAGTAGTGGCTATTATGACCATGGGTAAAGTTTATTATTTTCGTTTTTCATGGTTCTCAAAGTAAGTTTGAGTTAGTCTGCAATGATGCCTGCGTAAGTTTATCCGTCTTGTGCCCTACCTGCTTGACCTGTCTGGAAGAAAAGTACACTGTAATACTTGTTTTCTTTTGCATTAAGAACCCTGCCATAATTGATTCAACTTCAAATATCGAAAGTTGATGCAATCTAATCACCTTGATGCTATTGTGTATTATTCTATATTGGGTTTTCTCTCTGAAGTATCTTAAACTGATTACATGTAATTTAGTTGATCCTACTGAACTAGAATATATTGAATCCCGAATTTCACTGTTTTTATGTTTTGTCTTGTATGTAACTGGCTATACGTAATTAGGTTCATGCTCCCATAATAAACTGTGCTGGCTTGTTGTTCTTAACTGTGATATACATGTCTGCTGGTTTTAGTGGTTCATTTTGAATTAACACTCGTCGTACATGCTGCAGTTGGAGCTGAGGCTGATGATGATAGGATTCAACTACTACTCTCTCAAGTTGAGGGCAAAGATATCACTGAGTTGATTGCTGCCGGCAGAGAAAAATTGGCTTCAGTACCTGCTGGTGGAGGTGCTGCTTGTGCAGTTGCTGCACCTGGTGGTGGCGGTGCTGCACCTGCTGCTGAGGAGAAGAAGGAAGAAAAGAAAGTGGAAGAAAAAGAAGAGTCAGACGATGACATGGGTTTCAGTCTTTTCGATTAGAAGTCGAAGAAATCAGTTTATGAAGTATCCCCTTTTCCATTTGTTGTTCCCCTTGAGAGTGTATTTTAGGAGGTTTATTGTCTACTTACAGATTTTGCTTGAACTTAGAATTTTCATGGAAAACATTTGCAAACAGTTGAAATTATAATATGTATTTCAAATGTTCA</genome_strand>
        <mrna_strand>TTTGCTTAAAATCTCCACA.........................................................................................AGAAGAGAAGATGAAGGTTATCGCCGCTTACTTGTTGGCCGTCTTGGGTGGCAACACCTCCCCTTCAGAGAAGGATTTGAAGAAAATCCTTGCATCTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAGCTGAGGCTGATGATGATAGGATTCAACTACTACTCTCTCAAGTTGAGGGCAAAGATATCACTGAGTTGATTGCTGCCGGCAGAGAAAAATTGGCTTCAGTACCTGCTGGTGGAGGTGCTGCTTGTGCAGTTGCTGCACCTGGTGGTGGCGGTGCTGCACCTGCTGCTGAGGAGAAGAAGGAAGAAAAGAAAGTGGAAGAAAAAGAAGAGTCAGACGATGACATGGGTTTCAGTCTTTTCGATTAGAAGTCGAAGAAATCAGTTTATGAAGTATCCCCTTTTCCATTTGTTGTTCCCCTTGAGAGTGTATTTTAGGAGGTTTATTGTCTACTTACAGATTTTGCTTGAACTTAGAATTTTCATGGAAAACATTTGCAAACAGTTGAAATTATAATATGTATTTCAAATGTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E321763" ref_strand="+" ref_description="SGN-E321763 [cTOB-25-O2]">
      <seq>tttgcttaaaatctccacaagaagagaagatgaaggttatcgccgcttacttgttggccgtcttgggtggcaacacctccccttcagagaaggatttgaagaaaatccttgcatctgttggagctgaggctgatgatgataggattcaactactactctctcaagttgagggcaaagatatcactgagttgattgctgccggcagagaaaaattggcttcagtacctgctggtggaggtgctgcttgtgcagttgctgcacctggtggtggcggtgctgcacctgctgctgaggagaagaaggaagaaaagaaagtggaagaaaaagaagagtcagacgatgacatgggtttcagtcttttcgattagaagtcgaagaaatcagtttatgaagtatccccttttccatttgttgttccccttgagagtgtattttaggaggtttattgtctacttacagattttgcttgaacttagaattttcatggaaaacatttgcaaacagttgaaattataatatgtatttcaaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0099A03.1" temp_strand="+" temp_description="C06SLm0099A03.1  AC226730.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0099A03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="21046" stop="23256"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21346" g_stop="21364" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="19" r_length="19" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21365" i_stop="21453" i_length="89">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21454" g_stop="21551" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="117" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21552" i_stop="22542" i_length="991">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.511" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22543" g_stop="22956" g_length="414"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="531" r_length="414" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0099A03.1" gen_strand="+" ref_id="SGN-E321763" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>531</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0099A03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E321763" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21346" e_stop="21364"/>
          <exon e_start="21454" e_stop="21551"/>
          <exon e_start="22543" e_stop="22956"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGCTTAAAATCTCCACAGTACTTTCTCCCTCTCAATTTTCTATTGTTCGTAGTTTATTTTCTGCTCTTTATCTGAATTTTTTGTTTGTTGTGTTAATTTTGATCAGAGAAGAGAAGATGAAGGTTATCGCCGCTTACTTGTTGGCCGTCTTGGGTGGCAACACCTCCCCTTCAGAGAAGGATTTGAAGAAAATCCTTGCATCTGGTACGACCTTAGAGCCCATCTTACGGTTTTGTTGCATATGGATCCGAAATGTGTTGCCATTTATATATAACTCTATAGCGATTGATACGTGAAGTTATTTATTAGTATGTCTATGTAGTTGGTTTATGTGCCTAAATTACTTGTGCGATTTAGCTCAATTGCTAGAGATTAGATAATATTAGCGACAATGAGAGAAGTGCCAGCTTATATTGTGACAATTTTACTTGTGATTGTAATAGAGGTAGCTGAAGAAAATATTGTAGGAATGGTGAAAAAATAGTTTGGTAGAGATTTTTCAGAAATTGGAATTGTTTGAAGTGTGTGAAAGTTATATACTAGTTCATATAAGTGAATTAGGGTTAAATATTTTGGGATCTAGGGAAACCCTTGAATGCCGAGTGTGTAAATTGGGACTGAAGAGTAGTTAGGGGTTATGGAATAGCATCAAGTTAAACTCGTTCCTTGCCTTCGTTCAAGTTACCAGGTTTAGTAGTGGCTATTATGACCATGGGTAAAGTTTATTATTTTCGTTTTTCATGGTTCTCAAAGTAAGTTTGAGTTAGTCTGCAATGATGCCTGCGTAAGTTTATCCGTCTTGTGCCCTACCTGCTTGACCTGTCTGGAAGAAAAGTACACTGTAATACTTGTTTTCTTTTGCATTAAGAACCCTGCCATAATTGATTCAACTTCAAATATCGAAAGTTGATGCAATCTAATCACCTTGATGCTATTGTGTATTATTCTATATTGGGTTTTCTCTCTGAAGTATCTTAAACTGATTACATGTAATTTAGTTGATCCTACTGAACTAGAATATATTGAATCCCGAATTTCACTGTTTTTATGTTTTGTCTTGTATGTAACTGGCTATACGTAATTAGGTTCATGCTCCCATAATAAACTGTGCTGGCTTGTTGTTCTTAACTGTGATATACATGTCTGCTGGTTTTAGTGGTTCATTTTGAATTAACACTCGTCGTACATGCTGCAGTTGGAGCTGAGGCTGATGATGATAGGATTCAACTACTACTCTCTCAAGTTGAGGGCAAAGATATCACTGAGTTGATTGCTGCCGGCAGAGAAAAATTGGCTTCAGTACCTGCTGGTGGAGGTGCTGCTTGTGCAGTTGCTGCACCTGGTGGTGGCGGTGCTGCACCTGCTGCTGAGGAGAAGAAGGAAGAAAAGAAAGTGGAAGAAAAAGAAGAGTCAGACGATGACATGGGTTTCAGTCTTTTCGATTAGAAGTCGAAGAAATCAGTTTATGAAGTATCCCCTTTTCCATTTGTTGTTCCCCTTGAGAGTGTATTTTAGGAGGTTTATTGTCTACTTACAGATTTTGCTTGAACTTAGAATTTTCATGGAAAACATTTGCAAACAGTTGAAATTATAATATGTATTTCAAATG</genome_strand>
        <mrna_strand>TTTGCTTAAAATCTCCACA.........................................................................................AGAAGAGAAGATGAAGGTTATCGCCGCTTACTTGTTGGCCGTCTTGGGTGGCAACACCTCCCCTTCAGAGAAGGATTTGAAGAAAATCCTTGCATCTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAGCTGAGGCTGATGATGATAGGATTCAACTACTACTCTCTCAAGTTGAGGGCAAAGATATCACTGAGTTGATTGCTGCCGGCAGAGAAAAATTGGCTTCAGTACCTGCTGGTGGAGGTGCTGCTTGTGCAGTTGCTGCACCTGGTGGTGGCGGTGCTGCACCTGCTGCTGAGGAGAAGAAGGAAGAAAAGAAAGTGGAAGAAAAAGAAGAGTCAGACGATGACATGGGTTTCAGTCTTTTCGATTAGAAGTCGAAGAAATCAGTTTATGAAGTATCCCCTTTTCCATTTGTTGTTCCCCTTGAGAGTGTATTTTAGGAGGTTTATTGTCTACTTACAGATTTTGCTTGAACTTAGAATTTTCATGGAAAACATTTGCAAACAGTTGAAATTATAATATGTATTTCAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E286404" ref_strand="+" ref_description="SGN-E286404 [cLES-11-B14]">
      <seq>taaaatctccacaagaagagaagatgaaggttatcgccgcttacttgttggccgtcttgggtggcaacacctccccttcagagaaggatttgaagaaaatccttgcatctgttggagctgaggctgatgatgataggattcaactactactctctcaagttgagggcaaagatatcactgagttgattgctgccggcagagaaaaattggcttcagtacctgctggtggaggtgctgcttgtgcagttgctgcacctggtggtggcggtgctgcacctgctgctgaggagaagaaggaagaaaagaaagtggaagaaaaagaagagtcagacgatgacatgggtttcagtcttttcgattagaagtcgaagaaatcagtttatgaagtatccccttttccatttgttgttccccttgagagtgtattttaggaggtttattgtctacttacagattttgcttgaacttagaattttcatggaaaacatttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0099A03.1" temp_strand="+" temp_description="C06SLm0099A03.1  AC226730.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0099A03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="21142" stop="23223"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21352" g_stop="21364" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="13" r_length="13" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21365" i_stop="21453" i_length="89">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21454" g_stop="21551" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="111" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21552" i_stop="22542" i_length="991">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.511" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22543" g_stop="22923" g_length="381"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="492" r_length="381" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0099A03.1" gen_strand="+" ref_id="SGN-E286404" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>492</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0099A03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E286404" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21352" e_stop="21364"/>
          <exon e_start="21454" e_stop="21551"/>
          <exon e_start="22543" e_stop="22923"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATCTCCACAGTACTTTCTCCCTCTCAATTTTCTATTGTTCGTAGTTTATTTTCTGCTCTTTATCTGAATTTTTTGTTTGTTGTGTTAATTTTGATCAGAGAAGAGAAGATGAAGGTTATCGCCGCTTACTTGTTGGCCGTCTTGGGTGGCAACACCTCCCCTTCAGAGAAGGATTTGAAGAAAATCCTTGCATCTGGTACGACCTTAGAGCCCATCTTACGGTTTTGTTGCATATGGATCCGAAATGTGTTGCCATTTATATATAACTCTATAGCGATTGATACGTGAAGTTATTTATTAGTATGTCTATGTAGTTGGTTTATGTGCCTAAATTACTTGTGCGATTTAGCTCAATTGCTAGAGATTAGATAATATTAGCGACAATGAGAGAAGTGCCAGCTTATATTGTGACAATTTTACTTGTGATTGTAATAGAGGTAGCTGAAGAAAATATTGTAGGAATGGTGAAAAAATAGTTTGGTAGAGATTTTTCAGAAATTGGAATTGTTTGAAGTGTGTGAAAGTTATATACTAGTTCATATAAGTGAATTAGGGTTAAATATTTTGGGATCTAGGGAAACCCTTGAATGCCGAGTGTGTAAATTGGGACTGAAGAGTAGTTAGGGGTTATGGAATAGCATCAAGTTAAACTCGTTCCTTGCCTTCGTTCAAGTTACCAGGTTTAGTAGTGGCTATTATGACCATGGGTAAAGTTTATTATTTTCGTTTTTCATGGTTCTCAAAGTAAGTTTGAGTTAGTCTGCAATGATGCCTGCGTAAGTTTATCCGTCTTGTGCCCTACCTGCTTGACCTGTCTGGAAGAAAAGTACACTGTAATACTTGTTTTCTTTTGCATTAAGAACCCTGCCATAATTGATTCAACTTCAAATATCGAAAGTTGATGCAATCTAATCACCTTGATGCTATTGTGTATTATTCTATATTGGGTTTTCTCTCTGAAGTATCTTAAACTGATTACATGTAATTTAGTTGATCCTACTGAACTAGAATATATTGAATCCCGAATTTCACTGTTTTTATGTTTTGTCTTGTATGTAACTGGCTATACGTAATTAGGTTCATGCTCCCATAATAAACTGTGCTGGCTTGTTGTTCTTAACTGTGATATACATGTCTGCTGGTTTTAGTGGTTCATTTTGAATTAACACTCGTCGTACATGCTGCAGTTGGAGCTGAGGCTGATGATGATAGGATTCAACTACTACTCTCTCAAGTTGAGGGCAAAGATATCACTGAGTTGATTGCTGCCGGCAGAGAAAAATTGGCTTCAGTACCTGCTGGTGGAGGTGCTGCTTGTGCAGTTGCTGCACCTGGTGGTGGCGGTGCTGCACCTGCTGCTGAGGAGAAGAAGGAAGAAAAGAAAGTGGAAGAAAAAGAAGAGTCAGACGATGACATGGGTTTCAGTCTTTTCGATTAGAAGTCGAAGAAATCAGTTTATGAAGTATCCCCTTTTCCATTTGTTGTTCCCCTTGAGAGTGTATTTTAGGAGGTTTATTGTCTACTTACAGATTTTGCTTGAACTTAGAATTTTCATGGAAAACATTTGC</genome_strand>
        <mrna_strand>TAAAATCTCCACA.........................................................................................AGAAGAGAAGATGAAGGTTATCGCCGCTTACTTGTTGGCCGTCTTGGGTGGCAACACCTCCCCTTCAGAGAAGGATTTGAAGAAAATCCTTGCATCTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAGCTGAGGCTGATGATGATAGGATTCAACTACTACTCTCTCAAGTTGAGGGCAAAGATATCACTGAGTTGATTGCTGCCGGCAGAGAAAAATTGGCTTCAGTACCTGCTGGTGGAGGTGCTGCTTGTGCAGTTGCTGCACCTGGTGGTGGCGGTGCTGCACCTGCTGCTGAGGAGAAGAAGGAAGAAAAGAAAGTGGAAGAAAAAGAAGAGTCAGACGATGACATGGGTTTCAGTCTTTTCGATTAGAAGTCGAAGAAATCAGTTTATGAAGTATCCCCTTTTCCATTTGTTGTTCCCCTTGAGAGTGTATTTTAGGAGGTTTATTGTCTACTTACAGATTTTGCTTGAACTTAGAATTTTCATGGAAAACATTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E576211" ref_strand="-" ref_description="SGN-E576211 [59393]">
      <seq>aaaatctccaaaaaaagagaaaatgaaggttatcgccgcttacttgttggccgtcttaggtggcaacacctgcccttcagagaaggatttgaagaaaatccttgcatctgttggagctgaggctgatgatgataggattcaacttcttctctctcaagttgagggcaaagatatcactgagctgattgctgccggcagagaaaagttggcttcagtacctgctggtggaggtgctgcttgtgcagttgctgcacctggtgctgcggtgctgctgcacctgctgctagcggagaagaaggaagaaaagaaagtggaagaaaaagaggagtcagatgatgacatgggcttcagtcttttcgattagaagaagtcgaagaattcagtttatgaagtgttgtccccttttccatttgttgttccccttgagtgtattttacggaggtttacttgctacttacagattttgcttgaacttagaattttcatggaaaacattggtaaacagttgaaacttataatatgtatttcaaatgttcagcttggttca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0099A03.1" temp_strand="+" temp_description="C06SLm0099A03.1  AC226730.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0099A03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="21152" stop="23270"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21353" g_stop="21364" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="12" r_length="12" r_score="0.917"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21365" i_stop="21453" i_length="89">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.993" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21454" g_stop="21551" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="110" r_length="98" r_score="0.959"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21552" i_stop="22542" i_length="991">
            <donor d_prob="0.972" d_score="0.98"/>
            <acceptor a_prob="0.511" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22543" g_stop="22970" g_length="428"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="547" r_length="437" r_score="0.902"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0099A03.1" gen_strand="+" ref_id="SGN-E576211" ref_strand="-">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>538</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0099A03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E576211" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="21353" e_stop="21364"/>
          <exon e_start="21454" e_stop="21551"/>
          <exon e_start="22543" e_stop="22970"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATCTCCACAGTACTTTCTCCCTCTCAATTTTCTATTGTTCGTAGTTTATTTTCTGCTCTTTATCTGAATTTTTTGTTTGTTGTGTTAATTTTGATCAGAGAAGAGAAGATGAAGGTTATCGCCGCTTACTTGTTGGCCGTCTTGGGTGGCAACACCTCCCCTTCAGAGAAGGATTTGAAGAAAATCCTTGCATCTGGTACGACCTTAGAGCCCATCTTACGGTTTTGTTGCATATGGATCCGAAATGTGTTGCCATTTATATATAACTCTATAGCGATTGATACGTGAAGTTATTTATTAGTATGTCTATGTAGTTGGTTTATGTGCCTAAATTACTTGTGCGATTTAGCTCAATTGCTAGAGATTAGATAATATTAGCGACAATGAGAGAAGTGCCAGCTTATATTGTGACAATTTTACTTGTGATTGTAATAGAGGTAGCTGAAGAAAATATTGTAGGAATGGTGAAAAAATAGTTTGGTAGAGATTTTTCAGAAATTGGAATTGTTTGAAGTGTGTGAAAGTTATATACTAGTTCATATAAGTGAATTAGGGTTAAATATTTTGGGATCTAGGGAAACCCTTGAATGCCGAGTGTGTAAATTGGGACTGAAGAGTAGTTAGGGGTTATGGAATAGCATCAAGTTAAACTCGTTCCTTGCCTTCGTTCAAGTTACCAGGTTTAGTAGTGGCTATTATGACCATGGGTAAAGTTTATTATTTTCGTTTTTCATGGTTCTCAAAGTAAGTTTGAGTTAGTCTGCAATGATGCCTGCGTAAGTTTATCCGTCTTGTGCCCTACCTGCTTGACCTGTCTGGAAGAAAAGTACACTGTAATACTTGTTTTCTTTTGCATTAAGAACCCTGCCATAATTGATTCAACTTCAAATATCGAAAGTTGATGCAATCTAATCACCTTGATGCTATTGTGTATTATTCTATATTGGGTTTTCTCTCTGAAGTATCTTAAACTGATTACATGTAATTTAGTTGATCCTACTGAACTAGAATATATTGAATCCCGAATTTCACTGTTTTTATGTTTTGTCTTGTATGTAACTGGCTATACGTAATTAGGTTCATGCTCCCATAATAAACTGTGCTGGCTTGTTGTTCTTAACTGTGATATACATGTCTGCTGGTTTTAGTGGTTCATTTTGAATTAACACTCGTCGTACATGCTGCAGTTGGAGCTGAGGCTGATGATGATAGGATTCAACTACTACTCTCTCAAGTTGAGGGCAAAGATATCACTGAGTTGATTGCTGCCGGCAGAGAAAAATTGGCTTCAGTACCTGCTGGTGGAGGTGCTGCTTGTGCAGTTGCTGCACCTGGTG--GTGGCGGTGCTGCACCTGCTGCT-GAGGAGAAGAAGGAAGAAAAGAAAGTGGAAGAAAAAGAAGAGTCAGACGATGACATGGGTTTCAGTCTTTTCGATT--A-GAAGTCGAAGAAATCAGTTTATGAA--G-TATCCCCTTTTCCATTTGTTGTTCCCCTTGAGAGTGTATTTTA-GGAGGTTTATTGTCTACTTACAGATTTTGCTTGAACTTAGAATTTTCATGGAAAACATTTGCAAACAGTTGAAA-TTATAATATGTATTTCAAATGTTCAGCTTGGTTCA</genome_strand>
        <mrna_strand>AAAATCTCCAAA.........................................................................................AAAAGAGAAAATGAAGGTTATCGCCGCTTACTTGTTGGCCGTCTTAGGTGGCAACACCTGCCCTTCAGAGAAGGATTTGAAGAAAATCCTTGCATCTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAGCTGAGGCTGATGATGATAGGATTCAACTTCTTCTCTCTCAAGTTGAGGGCAAAGATATCACTGAGCTGATTGCTGCCGGCAGAGAAAAGTTGGCTTCAGTACCTGCTGGTGGAGGTGCTGCTTGTGCAGTTGCTGCACCTGGTGCTGCGGTGCTGCTGCACCTGCTGCTAGCGGAGAAGAAGGAAGAAAAGAAAGTGGAAGAAAAAGAGGAGTCAGATGATGACATGGGCTTCAGTCTTTTCGATTAGAAGAAGTCGAAGAATTCAGTTTATGAAGTGTTGTCCCCTTTTCCATTTGTTGTTCCCCTT--GAGTGTATTTTACGGAGGTTTACTTGCTACTTACAGATTTTGCTTGAACTTAGAATTTTCATGGAAAACATTGGTAAACAGTTGAAACTTATAATATGTATTTCAAATGTTCAGCTTGGTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E605757" ref_strand="-" ref_description="SGN-E605757 [21686]">
      <seq>tccaagaaaagagaaaatgaaggtgatcgccgcttacttgttggccgtcttagctggcaacacctgcccttcagagaaggatttgaagaaaatccttgcatctgttggagctgaggctgatgatgataggattcaacttcttctctctcaagttgagggcaaagatatcactgagctgattgctgccggcagagaaaagttggcttcagtacctgctggtggaggtgctgcttgcgcagttgctgcacctggtggtggcggtgctgctgcacctgctgctgcggagaagaaggaagaaaagaaagtggaagaaaaagaggagtcagatgatgacatgggcttcagtcttttcgattagaagaagtcgaagaattcagtttatgaagtgttgtccccttttccatttgttgttccccttgagtgtattttaggaggtttattgctacttacagattttgcttgaacttagaattttcatggaaaacattggtaaacagttgaaattataatatgtatttcaaatgttaaaaaaaaaaaaaaaaaaaaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0099A03.1" temp_strand="+" temp_description="C06SLm0099A03.1  AC226730.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0099A03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="21152" stop="23260"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21359" g_stop="21364" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="6" r_length="6" r_score="0.667"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21365" i_stop="21453" i_length="89">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.993" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21454" g_stop="21551" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="7" r_stop="104" r_length="98" r_score="0.939"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21552" i_stop="22542" i_length="991">
            <donor d_prob="0.972" d_score="0.98"/>
            <acceptor a_prob="0.511" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22543" g_stop="22960" g_length="418"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="528" r_length="424" r_score="0.916"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="529" polyA_stop="550"/>
      <MATCH_line gen_id="C06SLm0099A03.1" gen_strand="+" ref_id="SGN-E605757" ref_strand="-">
        <total_alignment_score>0.921</total_alignment_score>
        <cumulative_length_of_scored_exons>522</cumulative_length_of_scored_exons>
        <coverage percentage="0.949" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0099A03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E605757" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="21359" e_stop="21364"/>
          <exon e_start="21454" e_stop="21551"/>
          <exon e_start="22543" e_stop="22960"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCACAGTACTTTCTCCCTCTCAATTTTCTATTGTTCGTAGTTTATTTTCTGCTCTTTATCTGAATTTTTTGTTTGTTGTGTTAATTTTGATCAGAGAAGAGAAGATGAAGGTTATCGCCGCTTACTTGTTGGCCGTCTTGGGTGGCAACACCTCCCCTTCAGAGAAGGATTTGAAGAAAATCCTTGCATCTGGTACGACCTTAGAGCCCATCTTACGGTTTTGTTGCATATGGATCCGAAATGTGTTGCCATTTATATATAACTCTATAGCGATTGATACGTGAAGTTATTTATTAGTATGTCTATGTAGTTGGTTTATGTGCCTAAATTACTTGTGCGATTTAGCTCAATTGCTAGAGATTAGATAATATTAGCGACAATGAGAGAAGTGCCAGCTTATATTGTGACAATTTTACTTGTGATTGTAATAGAGGTAGCTGAAGAAAATATTGTAGGAATGGTGAAAAAATAGTTTGGTAGAGATTTTTCAGAAATTGGAATTGTTTGAAGTGTGTGAAAGTTATATACTAGTTCATATAAGTGAATTAGGGTTAAATATTTTGGGATCTAGGGAAACCCTTGAATGCCGAGTGTGTAAATTGGGACTGAAGAGTAGTTAGGGGTTATGGAATAGCATCAAGTTAAACTCGTTCCTTGCCTTCGTTCAAGTTACCAGGTTTAGTAGTGGCTATTATGACCATGGGTAAAGTTTATTATTTTCGTTTTTCATGGTTCTCAAAGTAAGTTTGAGTTAGTCTGCAATGATGCCTGCGTAAGTTTATCCGTCTTGTGCCCTACCTGCTTGACCTGTCTGGAAGAAAAGTACACTGTAATACTTGTTTTCTTTTGCATTAAGAACCCTGCCATAATTGATTCAACTTCAAATATCGAAAGTTGATGCAATCTAATCACCTTGATGCTATTGTGTATTATTCTATATTGGGTTTTCTCTCTGAAGTATCTTAAACTGATTACATGTAATTTAGTTGATCCTACTGAACTAGAATATATTGAATCCCGAATTTCACTGTTTTTATGTTTTGTCTTGTATGTAACTGGCTATACGTAATTAGGTTCATGCTCCCATAATAAACTGTGCTGGCTTGTTGTTCTTAACTGTGATATACATGTCTGCTGGTTTTAGTGGTTCATTTTGAATTAACACTCGTCGTACATGCTGCAGTTGGAGCTGAGGCTGATGATGATAGGATTCAACTACTACTCTCTCAAGTTGAGGGCAAAGATATCACTGAGTTGATTGCTGCCGGCAGAGAAAAATTGGCTTCAGTACCTGCTGGTGGAGGTGCTGCTTGTGCAGTTGCTGCACCTGGTGGTGGC-G-G-TGCTGCACCTGCTGCTGAGGAGAAGAAGGAAGAAAAGAAAGTGGAAGAAAAAGAAGAGTCAGACGATGACATGGGTTTCAGTCTTTTCGATTAGAA---GTCGAAGAAATCAGTTTATGAA--G-TATCCCCTTTTCCATTTGTTGTTCCCCTTGAGAGTGTATTTTAGGAGGTTTATTGTCTACTTACAGATTTTGCTTGAACTTAGAATTTTCATGGAAAACATTTGCAAACAGTTGAAATTATAATATGTATTTCAAATGTTCA</genome_strand>
        <mrna_strand>TCCAAG.........................................................................................AAAAGAGAAAATGAAGGTGATCGCCGCTTACTTGTTGGCCGTCTTAGCTGGCAACACCTGCCCTTCAGAGAAGGATTTGAAGAAAATCCTTGCATCTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAGCTGAGGCTGATGATGATAGGATTCAACTTCTTCTCTCTCAAGTTGAGGGCAAAGATATCACTGAGCTGATTGCTGCCGGCAGAGAAAAGTTGGCTTCAGTACCTGCTGGTGGAGGTGCTGCTTGCGCAGTTGCTGCACCTGGTGGTGGCGGTGCTGCTGCACCTGCTGCTGCGGAGAAGAAGGAAGAAAAGAAAGTGGAAGAAAAAGAGGAGTCAGATGATGACATGGGCTTCAGTCTTTTCGATTAGAAGAAGTCGAAGAATTCAGTTTATGAAGTGTTGTCCCCTTTTCCATTTGTTGTTCCCCTT--GAGTGTATTTTAGGAGGTTTATTG-CTACTTACAGATTTTGCTTGAACTTAGAATTTTCATGGAAAACATTGGTAAACAGTTGAAATTATAATATGTATTTCAAATGTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E560618" ref_strand="+" ref_description="SGN-E560618 [20300]">
      <seq>aatgaaggttatcgccgcttaccttgttggccgtcttaggtggcaacacctgcccttcagaagaagggatttgaagaaaatccttggcatctgttggagctgaggctgatgatgataggattcaacttcttctctctcaagttgagggcaaagatatcactgagctgattgctgccggcagagaaaagttggcttcagtacctgctggtggaggtgctgcttgtgcagttgctgcacctggtggtggcggtgctgctgcacctgctgctgcggagaagaaggaagaaaagaaagtggaagaaaaagaggagtcagatgatgacatgggcttcagtcttttcgattagaagaagtcgaagaattcagtttatgaagtgttgtccccttttccatttgttgttccccttgagtgtattttaggaggtttattgctacttacagattttgcttgaacttagaattttcatggaaaacattggtaaacagttgaaattataatatgtatttcaaatgttaaaacaaaaaaacaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0099A03.1" temp_strand="+" temp_description="C06SLm0099A03.1  AC226730.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0099A03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="21164" stop="23260"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21463" g_stop="21551" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="93" r_length="93" r_score="0.876"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21552" i_stop="22542" i_length="991">
            <donor d_prob="0.972" d_score="0.85"/>
            <acceptor a_prob="0.511" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22543" g_stop="22960" g_length="418"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="517" r_length="424" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0099A03.1" gen_strand="+" ref_id="SGN-E560618" ref_strand="+">
        <total_alignment_score>0.911</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0099A03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E560618" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21463" e_stop="21551"/>
          <exon e_start="22543" e_stop="22960"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGAAGGTTATCGCCGCTTA-CTTGTTGGCCGTCTTGGGTGGCAACACCTCCCCTTCAG-AGAA-GGATTTGAAGAAAATCCTT-GCATCTGGTACGACCTTAGAGCCCATCTTACGGTTTTGTTGCATATGGATCCGAAATGTGTTGCCATTTATATATAACTCTATAGCGATTGATACGTGAAGTTATTTATTAGTATGTCTATGTAGTTGGTTTATGTGCCTAAATTACTTGTGCGATTTAGCTCAATTGCTAGAGATTAGATAATATTAGCGACAATGAGAGAAGTGCCAGCTTATATTGTGACAATTTTACTTGTGATTGTAATAGAGGTAGCTGAAGAAAATATTGTAGGAATGGTGAAAAAATAGTTTGGTAGAGATTTTTCAGAAATTGGAATTGTTTGAAGTGTGTGAAAGTTATATACTAGTTCATATAAGTGAATTAGGGTTAAATATTTTGGGATCTAGGGAAACCCTTGAATGCCGAGTGTGTAAATTGGGACTGAAGAGTAGTTAGGGGTTATGGAATAGCATCAAGTTAAACTCGTTCCTTGCCTTCGTTCAAGTTACCAGGTTTAGTAGTGGCTATTATGACCATGGGTAAAGTTTATTATTTTCGTTTTTCATGGTTCTCAAAGTAAGTTTGAGTTAGTCTGCAATGATGCCTGCGTAAGTTTATCCGTCTTGTGCCCTACCTGCTTGACCTGTCTGGAAGAAAAGTACACTGTAATACTTGTTTTCTTTTGCATTAAGAACCCTGCCATAATTGATTCAACTTCAAATATCGAAAGTTGATGCAATCTAATCACCTTGATGCTATTGTGTATTATTCTATATTGGGTTTTCTCTCTGAAGTATCTTAAACTGATTACATGTAATTTAGTTGATCCTACTGAACTAGAATATATTGAATCCCGAATTTCACTGTTTTTATGTTTTGTCTTGTATGTAACTGGCTATACGTAATTAGGTTCATGCTCCCATAATAAACTGTGCTGGCTTGTTGTTCTTAACTGTGATATACATGTCTGCTGGTTTTAGTGGTTCATTTTGAATTAACACTCGTCGTACATGCTGCAGTTGGAGCTGAGGCTGATGATGATAGGATTCAACTACTACTCTCTCAAGTTGAGGGCAAAGATATCACTGAGTTGATTGCTGCCGGCAGAGAAAAATTGGCTTCAGTACCTGCTGGTGGAGGTGCTGCTTGTGCAGTTGCTGCACCTGGTGGTGGC-G-G-TGCTGCACCTGCTGCTGAGGAGAAGAAGGAAGAAAAGAAAGTGGAAGAAAAAGAAGAGTCAGACGATGACATGGGTTTCAGTCTTTTCGATT---AGAAGTCGAAGAAATCAGTTTATGAA--G-TATCCCCTTTTCCATTTGTTGTTCCCCTTGAGAGTGTATTTTAGGAGGTTTATTGTCTACTTACAGATTTTGCTTGAACTTAGAATTTTCATGGAAAACATTTGCAAACAGTTGAAATTATAATATGTATTTCAAATGTTCA</genome_strand>
        <mrna_strand>AATGAAGGTTATCGCCGCTTACCTTGTTGGCCGTCTTAGGTGGCAACACCTGCCCTTCAGAAGAAGGGATTTGAAGAAAATCCTTGGCATCTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAGCTGAGGCTGATGATGATAGGATTCAACTTCTTCTCTCTCAAGTTGAGGGCAAAGATATCACTGAGCTGATTGCTGCCGGCAGAGAAAAGTTGGCTTCAGTACCTGCTGGTGGAGGTGCTGCTTGTGCAGTTGCTGCACCTGGTGGTGGCGGTGCTGCTGCACCTGCTGCTGCGGAGAAGAAGGAAGAAAAGAAAGTGGAAGAAAAAGAGGAGTCAGATGATGACATGGGCTTCAGTCTTTTCGATTAGAAGAAGTCGAAGAATTCAGTTTATGAAGTGTTGTCCCCTTTTCCATTTGTTGTTCCCCTT--GAGTGTATTTTAGGAGGTTTATTG-CTACTTACAGATTTTGCTTGAACTTAGAATTTTCATGGAAAACATTGGTAAACAGTTGAAATTATAATATGTATTTCAAATGTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E351964" ref_strand="+" ref_description="SGN-E351964 [cTOS-13-A9]">
      <seq>cgcttacttgttggccgtcttgggtggcaacacctccccttcagagaaggatttgaagaaaatccttgcatctgttggagctgaggctgatgatgataggattcaactactactctctcaagttgagggcaaagatatcactgagttgattgctgccggcagagaaaaattggcttcagtacctgctggtggaggtgctgcttgtgcagttgctgcacctggtggtggcggtgctgcacctgctgctgaggagaagaaggaagaaaagaaagtggaagaaaaagaagagtcagacgatgacatgggtttcagtcttttcgattagaagtcgaagaaatcagtttatgaagtatccccttttccatttgttgttccccttgagagtgtattttaggaggtttattgtctacttacagattttgcttgaacttagaattttcatggaaaacatttgcaaacagttgaaattataatatgtatttcaaatgttcaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0099A03.1" temp_strand="+" temp_description="C06SLm0099A03.1  AC226730.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0099A03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="21178" stop="23260"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21478" g_stop="21551" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21552" i_stop="22542" i_length="991">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.511" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22543" g_stop="22960" g_length="418"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="492" r_length="418" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="493" polyA_stop="504"/>
      <MATCH_line gen_id="C06SLm0099A03.1" gen_strand="+" ref_id="SGN-E351964" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>492</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0099A03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E351964" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21478" e_stop="21551"/>
          <exon e_start="22543" e_stop="22960"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCTTACTTGTTGGCCGTCTTGGGTGGCAACACCTCCCCTTCAGAGAAGGATTTGAAGAAAATCCTTGCATCTGGTACGACCTTAGAGCCCATCTTACGGTTTTGTTGCATATGGATCCGAAATGTGTTGCCATTTATATATAACTCTATAGCGATTGATACGTGAAGTTATTTATTAGTATGTCTATGTAGTTGGTTTATGTGCCTAAATTACTTGTGCGATTTAGCTCAATTGCTAGAGATTAGATAATATTAGCGACAATGAGAGAAGTGCCAGCTTATATTGTGACAATTTTACTTGTGATTGTAATAGAGGTAGCTGAAGAAAATATTGTAGGAATGGTGAAAAAATAGTTTGGTAGAGATTTTTCAGAAATTGGAATTGTTTGAAGTGTGTGAAAGTTATATACTAGTTCATATAAGTGAATTAGGGTTAAATATTTTGGGATCTAGGGAAACCCTTGAATGCCGAGTGTGTAAATTGGGACTGAAGAGTAGTTAGGGGTTATGGAATAGCATCAAGTTAAACTCGTTCCTTGCCTTCGTTCAAGTTACCAGGTTTAGTAGTGGCTATTATGACCATGGGTAAAGTTTATTATTTTCGTTTTTCATGGTTCTCAAAGTAAGTTTGAGTTAGTCTGCAATGATGCCTGCGTAAGTTTATCCGTCTTGTGCCCTACCTGCTTGACCTGTCTGGAAGAAAAGTACACTGTAATACTTGTTTTCTTTTGCATTAAGAACCCTGCCATAATTGATTCAACTTCAAATATCGAAAGTTGATGCAATCTAATCACCTTGATGCTATTGTGTATTATTCTATATTGGGTTTTCTCTCTGAAGTATCTTAAACTGATTACATGTAATTTAGTTGATCCTACTGAACTAGAATATATTGAATCCCGAATTTCACTGTTTTTATGTTTTGTCTTGTATGTAACTGGCTATACGTAATTAGGTTCATGCTCCCATAATAAACTGTGCTGGCTTGTTGTTCTTAACTGTGATATACATGTCTGCTGGTTTTAGTGGTTCATTTTGAATTAACACTCGTCGTACATGCTGCAGTTGGAGCTGAGGCTGATGATGATAGGATTCAACTACTACTCTCTCAAGTTGAGGGCAAAGATATCACTGAGTTGATTGCTGCCGGCAGAGAAAAATTGGCTTCAGTACCTGCTGGTGGAGGTGCTGCTTGTGCAGTTGCTGCACCTGGTGGTGGCGGTGCTGCACCTGCTGCTGAGGAGAAGAAGGAAGAAAAGAAAGTGGAAGAAAAAGAAGAGTCAGACGATGACATGGGTTTCAGTCTTTTCGATTAGAAGTCGAAGAAATCAGTTTATGAAGTATCCCCTTTTCCATTTGTTGTTCCCCTTGAGAGTGTATTTTAGGAGGTTTATTGTCTACTTACAGATTTTGCTTGAACTTAGAATTTTCATGGAAAACATTTGCAAACAGTTGAAATTATAATATGTATTTCAAATGTTCA</genome_strand>
        <mrna_strand>CGCTTACTTGTTGGCCGTCTTGGGTGGCAACACCTCCCCTTCAGAGAAGGATTTGAAGAAAATCCTTGCATCTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAGCTGAGGCTGATGATGATAGGATTCAACTACTACTCTCTCAAGTTGAGGGCAAAGATATCACTGAGTTGATTGCTGCCGGCAGAGAAAAATTGGCTTCAGTACCTGCTGGTGGAGGTGCTGCTTGTGCAGTTGCTGCACCTGGTGGTGGCGGTGCTGCACCTGCTGCTGAGGAGAAGAAGGAAGAAAAGAAAGTGGAAGAAAAAGAAGAGTCAGACGATGACATGGGTTTCAGTCTTTTCGATTAGAAGTCGAAGAAATCAGTTTATGAAGTATCCCCTTTTCCATTTGTTGTTCCCCTTGAGAGTGTATTTTAGGAGGTTTATTGTCTACTTACAGATTTTGCTTGAACTTAGAATTTTCATGGAAAACATTTGCAAACAGTTGAAATTATAATATGTATTTCAAATGTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E219736" ref_strand="+" ref_description="SGN-E219736 [cLEL-24-E7](-)">
      <seq>ggcaccaggttggccgtcttgggtggcaacaccctccccttcagagaaggatttgaagaaaatccttgcatctgttggagctgaggctgatgatgataggattcaactactactctctcaagttgagggcaaagatatcactgagttgattgctgccggcagagaaaaattggcttcagtacctgctggtggaggtgctgcttgtgcagttgctgcacctggtggtggcggtgctgcacctgctgctgaggagaagaaggaagaaaagaaagtggaagaaaaagaagagtcagacgatgacatgggtttcagtcttttcgattagaagtcgaagaaatcagtttatgaagtatccccttttccatttgttgttccccttgagagtgtattttaggaggtttattgtctacttacagattttgcttgaacttagaattttcatggaaaacatttgcaaacagttgaaattataatatgtatttcaaatgttcagcttggttcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0099A03.1" temp_strand="+" temp_description="C06SLm0099A03.1  AC226730.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0099A03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="21187" stop="23275"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21479" g_stop="21551" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="0.890"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21552" i_stop="22542" i_length="991">
            <donor d_prob="0.972" d_score="0.96"/>
            <acceptor a_prob="0.511" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22543" g_stop="22970" g_length="428"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="502" r_length="428" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="503" polyA_stop="518"/>
      <MATCH_line gen_id="C06SLm0099A03.1" gen_strand="+" ref_id="SGN-E219736" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>501</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0099A03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E219736" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21479" e_stop="21551"/>
          <exon e_start="22543" e_stop="22970"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTACTTGTTGGCCGTCTTGGGTGGCAACA-CCTCCCCTTCAGAGAAGGATTTGAAGAAAATCCTTGCATCTGGTACGACCTTAGAGCCCATCTTACGGTTTTGTTGCATATGGATCCGAAATGTGTTGCCATTTATATATAACTCTATAGCGATTGATACGTGAAGTTATTTATTAGTATGTCTATGTAGTTGGTTTATGTGCCTAAATTACTTGTGCGATTTAGCTCAATTGCTAGAGATTAGATAATATTAGCGACAATGAGAGAAGTGCCAGCTTATATTGTGACAATTTTACTTGTGATTGTAATAGAGGTAGCTGAAGAAAATATTGTAGGAATGGTGAAAAAATAGTTTGGTAGAGATTTTTCAGAAATTGGAATTGTTTGAAGTGTGTGAAAGTTATATACTAGTTCATATAAGTGAATTAGGGTTAAATATTTTGGGATCTAGGGAAACCCTTGAATGCCGAGTGTGTAAATTGGGACTGAAGAGTAGTTAGGGGTTATGGAATAGCATCAAGTTAAACTCGTTCCTTGCCTTCGTTCAAGTTACCAGGTTTAGTAGTGGCTATTATGACCATGGGTAAAGTTTATTATTTTCGTTTTTCATGGTTCTCAAAGTAAGTTTGAGTTAGTCTGCAATGATGCCTGCGTAAGTTTATCCGTCTTGTGCCCTACCTGCTTGACCTGTCTGGAAGAAAAGTACACTGTAATACTTGTTTTCTTTTGCATTAAGAACCCTGCCATAATTGATTCAACTTCAAATATCGAAAGTTGATGCAATCTAATCACCTTGATGCTATTGTGTATTATTCTATATTGGGTTTTCTCTCTGAAGTATCTTAAACTGATTACATGTAATTTAGTTGATCCTACTGAACTAGAATATATTGAATCCCGAATTTCACTGTTTTTATGTTTTGTCTTGTATGTAACTGGCTATACGTAATTAGGTTCATGCTCCCATAATAAACTGTGCTGGCTTGTTGTTCTTAACTGTGATATACATGTCTGCTGGTTTTAGTGGTTCATTTTGAATTAACACTCGTCGTACATGCTGCAGTTGGAGCTGAGGCTGATGATGATAGGATTCAACTACTACTCTCTCAAGTTGAGGGCAAAGATATCACTGAGTTGATTGCTGCCGGCAGAGAAAAATTGGCTTCAGTACCTGCTGGTGGAGGTGCTGCTTGTGCAGTTGCTGCACCTGGTGGTGGCGGTGCTGCACCTGCTGCTGAGGAGAAGAAGGAAGAAAAGAAAGTGGAAGAAAAAGAAGAGTCAGACGATGACATGGGTTTCAGTCTTTTCGATTAGAAGTCGAAGAAATCAGTTTATGAAGTATCCCCTTTTCCATTTGTTGTTCCCCTTGAGAGTGTATTTTAGGAGGTTTATTGTCTACTTACAGATTTTGCTTGAACTTAGAATTTTCATGGAAAACATTTGCAAACAGTTGAAATTATAATATGTATTTCAAATGTTCAGCTTGGTTCA</genome_strand>
        <mrna_strand>GGCACCAGGTTGGCCGTCTTGGGTGGCAACACCCTCCCCTTCAGAGAAGGATTTGAAGAAAATCCTTGCATCTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAGCTGAGGCTGATGATGATAGGATTCAACTACTACTCTCTCAAGTTGAGGGCAAAGATATCACTGAGTTGATTGCTGCCGGCAGAGAAAAATTGGCTTCAGTACCTGCTGGTGGAGGTGCTGCTTGTGCAGTTGCTGCACCTGGTGGTGGCGGTGCTGCACCTGCTGCTGAGGAGAAGAAGGAAGAAAAGAAAGTGGAAGAAAAAGAAGAGTCAGACGATGACATGGGTTTCAGTCTTTTCGATTAGAAGTCGAAGAAATCAGTTTATGAAGTATCCCCTTTTCCATTTGTTGTTCCCCTTGAGAGTGTATTTTAGGAGGTTTATTGTCTACTTACAGATTTTGCTTGAACTTAGAATTTTCATGGAAAACATTTGCAAACAGTTGAAATTATAATATGTATTTCAAATGTTCAGCTTGGTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E712768" ref_strand="+" ref_description="SGN-E712768 [FB05DB01]">
      <seq>cgttggccgtcttgggtggcaacacctccccttcagagaaggatttgaagaaaatccttgcatctgttggagctgaggctgatgatgataggattcaactactactctctcaagttgagggcaaagatatcactgagttgattgctgccggcagagaaaaattggcttcagtacctgctggtggaggtgctgcttgtgcagttgctgcacctggtggtggcggtgctgcacctgctgctgaggagaagaaggaagaaaagaaagtggaagaaaaagaagagtcagacgatgacatgggtttcagtcttttcgattagaagtcgaagaaatcagtttatgaagtatccccttttccatttgttgttccccttgagagtgtattttaggaggtttattgtctacttacagattttgcttgaacttagaattttcatggaaaacatttgcaaacagttgaaattataatatgtatttcaaatgttcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0099A03.1" temp_strand="+" temp_description="C06SLm0099A03.1  AC226730.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0099A03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="21187" stop="23260"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21486" g_stop="21551" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21552" i_stop="22542" i_length="991">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.511" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22543" g_stop="22960" g_length="418"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="484" r_length="418" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="485" polyA_stop="500"/>
      <MATCH_line gen_id="C06SLm0099A03.1" gen_strand="+" ref_id="SGN-E712768" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>484</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0099A03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E712768" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21486" e_stop="21551"/>
          <exon e_start="22543" e_stop="22960"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTGGCCGTCTTGGGTGGCAACACCTCCCCTTCAGAGAAGGATTTGAAGAAAATCCTTGCATCTGGTACGACCTTAGAGCCCATCTTACGGTTTTGTTGCATATGGATCCGAAATGTGTTGCCATTTATATATAACTCTATAGCGATTGATACGTGAAGTTATTTATTAGTATGTCTATGTAGTTGGTTTATGTGCCTAAATTACTTGTGCGATTTAGCTCAATTGCTAGAGATTAGATAATATTAGCGACAATGAGAGAAGTGCCAGCTTATATTGTGACAATTTTACTTGTGATTGTAATAGAGGTAGCTGAAGAAAATATTGTAGGAATGGTGAAAAAATAGTTTGGTAGAGATTTTTCAGAAATTGGAATTGTTTGAAGTGTGTGAAAGTTATATACTAGTTCATATAAGTGAATTAGGGTTAAATATTTTGGGATCTAGGGAAACCCTTGAATGCCGAGTGTGTAAATTGGGACTGAAGAGTAGTTAGGGGTTATGGAATAGCATCAAGTTAAACTCGTTCCTTGCCTTCGTTCAAGTTACCAGGTTTAGTAGTGGCTATTATGACCATGGGTAAAGTTTATTATTTTCGTTTTTCATGGTTCTCAAAGTAAGTTTGAGTTAGTCTGCAATGATGCCTGCGTAAGTTTATCCGTCTTGTGCCCTACCTGCTTGACCTGTCTGGAAGAAAAGTACACTGTAATACTTGTTTTCTTTTGCATTAAGAACCCTGCCATAATTGATTCAACTTCAAATATCGAAAGTTGATGCAATCTAATCACCTTGATGCTATTGTGTATTATTCTATATTGGGTTTTCTCTCTGAAGTATCTTAAACTGATTACATGTAATTTAGTTGATCCTACTGAACTAGAATATATTGAATCCCGAATTTCACTGTTTTTATGTTTTGTCTTGTATGTAACTGGCTATACGTAATTAGGTTCATGCTCCCATAATAAACTGTGCTGGCTTGTTGTTCTTAACTGTGATATACATGTCTGCTGGTTTTAGTGGTTCATTTTGAATTAACACTCGTCGTACATGCTGCAGTTGGAGCTGAGGCTGATGATGATAGGATTCAACTACTACTCTCTCAAGTTGAGGGCAAAGATATCACTGAGTTGATTGCTGCCGGCAGAGAAAAATTGGCTTCAGTACCTGCTGGTGGAGGTGCTGCTTGTGCAGTTGCTGCACCTGGTGGTGGCGGTGCTGCACCTGCTGCTGAGGAGAAGAAGGAAGAAAAGAAAGTGGAAGAAAAAGAAGAGTCAGACGATGACATGGGTTTCAGTCTTTTCGATTAGAAGTCGAAGAAATCAGTTTATGAAGTATCCCCTTTTCCATTTGTTGTTCCCCTTGAGAGTGTATTTTAGGAGGTTTATTGTCTACTTACAGATTTTGCTTGAACTTAGAATTTTCATGGAAAACATTTGCAAACAGTTGAAATTATAATATGTATTTCAAATGTTCA</genome_strand>
        <mrna_strand>CGTTGGCCGTCTTGGGTGGCAACACCTCCCCTTCAGAGAAGGATTTGAAGAAAATCCTTGCATCTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAGCTGAGGCTGATGATGATAGGATTCAACTACTACTCTCTCAAGTTGAGGGCAAAGATATCACTGAGTTGATTGCTGCCGGCAGAGAAAAATTGGCTTCAGTACCTGCTGGTGGAGGTGCTGCTTGTGCAGTTGCTGCACCTGGTGGTGGCGGTGCTGCACCTGCTGCTGAGGAGAAGAAGGAAGAAAAGAAAGTGGAAGAAAAAGAAGAGTCAGACGATGACATGGGTTTCAGTCTTTTCGATTAGAAGTCGAAGAAATCAGTTTATGAAGTATCCCCTTTTCCATTTGTTGTTCCCCTTGAGAGTGTATTTTAGGAGGTTTATTGTCTACTTACAGATTTTGCTTGAACTTAGAATTTTCATGGAAAACATTTGCAAACAGTTGAAATTATAATATGTATTTCAAATGTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E568988" ref_strand="+" ref_description="SGN-E568988 [13357]">
      <seq>ggccgtcttaggtggcaacacctgcccttcagagaaggatttgaagaaaatccttgcatctgttggagctgaggctgatgatgataggattcaacttcttctctctcaagttgagggcaaagatatcactgagctgattgctgccggcagacaaaagttggcttcagtacctgctggtggaggtgctgcttgtgcagttgctgcacctggtggtggcggtgctgctgcacctgctgctgcggagaagaaggaagaaaagaaagtggaagaaaaagaggagtcagatgatgacatgggcttcagtcttttcgattagaagaagtcgaagaattcagtttatgaagtgttgtccccttttccatttgttgttccccttgagtgtattttaggaggtttattgctacttacagattttgcttgaacttagaattttcatggaaaacattggtaaacagttgaaattataatatgtatttcaaatgttcagcttggttcaatatatctatccctttttatctta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0099A03.1" temp_strand="+" temp_description="C06SLm0099A03.1  AC226730.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0099A03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="21190" stop="23294"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21490" g_stop="21551" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21552" i_stop="22542" i_length="991">
            <donor d_prob="0.972" d_score="0.98"/>
            <acceptor a_prob="0.511" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22543" g_stop="22994" g_length="452"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="520" r_length="458" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0099A03.1" gen_strand="+" ref_id="SGN-E568988" ref_strand="+">
        <total_alignment_score>0.924</total_alignment_score>
        <cumulative_length_of_scored_exons>514</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0099A03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E568988" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21490" e_stop="21551"/>
          <exon e_start="22543" e_stop="22994"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCCGTCTTGGGTGGCAACACCTCCCCTTCAGAGAAGGATTTGAAGAAAATCCTTGCATCTGGTACGACCTTAGAGCCCATCTTACGGTTTTGTTGCATATGGATCCGAAATGTGTTGCCATTTATATATAACTCTATAGCGATTGATACGTGAAGTTATTTATTAGTATGTCTATGTAGTTGGTTTATGTGCCTAAATTACTTGTGCGATTTAGCTCAATTGCTAGAGATTAGATAATATTAGCGACAATGAGAGAAGTGCCAGCTTATATTGTGACAATTTTACTTGTGATTGTAATAGAGGTAGCTGAAGAAAATATTGTAGGAATGGTGAAAAAATAGTTTGGTAGAGATTTTTCAGAAATTGGAATTGTTTGAAGTGTGTGAAAGTTATATACTAGTTCATATAAGTGAATTAGGGTTAAATATTTTGGGATCTAGGGAAACCCTTGAATGCCGAGTGTGTAAATTGGGACTGAAGAGTAGTTAGGGGTTATGGAATAGCATCAAGTTAAACTCGTTCCTTGCCTTCGTTCAAGTTACCAGGTTTAGTAGTGGCTATTATGACCATGGGTAAAGTTTATTATTTTCGTTTTTCATGGTTCTCAAAGTAAGTTTGAGTTAGTCTGCAATGATGCCTGCGTAAGTTTATCCGTCTTGTGCCCTACCTGCTTGACCTGTCTGGAAGAAAAGTACACTGTAATACTTGTTTTCTTTTGCATTAAGAACCCTGCCATAATTGATTCAACTTCAAATATCGAAAGTTGATGCAATCTAATCACCTTGATGCTATTGTGTATTATTCTATATTGGGTTTTCTCTCTGAAGTATCTTAAACTGATTACATGTAATTTAGTTGATCCTACTGAACTAGAATATATTGAATCCCGAATTTCACTGTTTTTATGTTTTGTCTTGTATGTAACTGGCTATACGTAATTAGGTTCATGCTCCCATAATAAACTGTGCTGGCTTGTTGTTCTTAACTGTGATATACATGTCTGCTGGTTTTAGTGGTTCATTTTGAATTAACACTCGTCGTACATGCTGCAGTTGGAGCTGAGGCTGATGATGATAGGATTCAACTACTACTCTCTCAAGTTGAGGGCAAAGATATCACTGAGTTGATTGCTGCCGGCAGAGAAAAATTGGCTTCAGTACCTGCTGGTGGAGGTGCTGCTTGTGCAGTTGCTGCACCTGGTGGTGGC-G-G-TGCTGCACCTGCTGCTGAGGAGAAGAAGGAAGAAAAGAAAGTGGAAGAAAAAGAAGAGTCAGACGATGACATGGGTTTCAGTCTTTTCGATT---AGAAGTCGAAGAAATCAGTTTATGAA--G-TATCCCCTTTTCCATTTGTTGTTCCCCTTGAGAGTGTATTTTAGGAGGTTTATTGTCTACTTACAGATTTTGCTTGAACTTAGAATTTTCATGGAAAACATTTGCAAACAGTTGAAATTATAATATGTATTTCAAATGTTCAGCTTGGTTCAATATATCTACCCTTTTTGATCTTA</genome_strand>
        <mrna_strand>GGCCGTCTTAGGTGGCAACACCTGCCCTTCAGAGAAGGATTTGAAGAAAATCCTTGCATCTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAGCTGAGGCTGATGATGATAGGATTCAACTTCTTCTCTCTCAAGTTGAGGGCAAAGATATCACTGAGCTGATTGCTGCCGGCAGACAAAAGTTGGCTTCAGTACCTGCTGGTGGAGGTGCTGCTTGTGCAGTTGCTGCACCTGGTGGTGGCGGTGCTGCTGCACCTGCTGCTGCGGAGAAGAAGGAAGAAAAGAAAGTGGAAGAAAAAGAGGAGTCAGATGATGACATGGGCTTCAGTCTTTTCGATTAGAAGAAGTCGAAGAATTCAGTTTATGAAGTGTTGTCCCCTTTTCCATTTGTTGTTCCCCTT--GAGTGTATTTTAGGAGGTTTATTG-CTACTTACAGATTTTGCTTGAACTTAGAATTTTCATGGAAAACATTGGTAAACAGTTGAAATTATAATATGTATTTCAAATGTTCAGCTTGGTTCAATATATCTATCCCTTTTTATCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E225875" ref_strand="+" ref_description="SGN-E225875 [cLEL-17-M23](-)">
      <seq>cgtcttgggtggcaacacctccccttcagagaaggatttgaagaaaatccttgcatctgttggagctgaggctgatgatgataggattcaactactactctctcaagttgagggcaaagatatcactgagttgattgctgccggcagagaaaaattggcttcagtacctgctggtggaggtgctgcttgtgcagttgctgcacctggtggtggcggtgctgcacctgctgctgaggagaagaaggaagaaaagaaagtggaagaaaaagaagagtcagacgatgacatgggtttcagtcttttcgattagaagtcgaagaaatcagtttatgaagtatccccttttccatttgttgttccccttgagagtgtattttaggaggtttattgtctacttacagattttgcttgaacttagaattttcatggaaaacatttgcaaacagttgaaattataatatgtatttcaaatgttccaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0099A03.1" temp_strand="+" temp_description="C06SLm0099A03.1  AC226730.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0099A03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="21193" stop="42072"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21493" g_stop="21551" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21552" i_stop="22542" i_length="991">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.511" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22543" g_stop="22959" g_length="417"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="476" r_length="417" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="22960" i_stop="23502" i_length="543">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23503" g_stop="23521" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="477" r_stop="495" r_length="19" r_score="0.842"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0099A03.1" gen_strand="+" ref_id="SGN-E225875" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>495</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0099A03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E225875" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21493" e_stop="21551"/>
          <exon e_start="22543" e_stop="22959"/>
          <exon e_start="23503" e_stop="23521"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTCTTGGGTGGCAACACCTCCCCTTCAGAGAAGGATTTGAAGAAAATCCTTGCATCTGGTACGACCTTAGAGCCCATCTTACGGTTTTGTTGCATATGGATCCGAAATGTGTTGCCATTTATATATAACTCTATAGCGATTGATACGTGAAGTTATTTATTAGTATGTCTATGTAGTTGGTTTATGTGCCTAAATTACTTGTGCGATTTAGCTCAATTGCTAGAGATTAGATAATATTAGCGACAATGAGAGAAGTGCCAGCTTATATTGTGACAATTTTACTTGTGATTGTAATAGAGGTAGCTGAAGAAAATATTGTAGGAATGGTGAAAAAATAGTTTGGTAGAGATTTTTCAGAAATTGGAATTGTTTGAAGTGTGTGAAAGTTATATACTAGTTCATATAAGTGAATTAGGGTTAAATATTTTGGGATCTAGGGAAACCCTTGAATGCCGAGTGTGTAAATTGGGACTGAAGAGTAGTTAGGGGTTATGGAATAGCATCAAGTTAAACTCGTTCCTTGCCTTCGTTCAAGTTACCAGGTTTAGTAGTGGCTATTATGACCATGGGTAAAGTTTATTATTTTCGTTTTTCATGGTTCTCAAAGTAAGTTTGAGTTAGTCTGCAATGATGCCTGCGTAAGTTTATCCGTCTTGTGCCCTACCTGCTTGACCTGTCTGGAAGAAAAGTACACTGTAATACTTGTTTTCTTTTGCATTAAGAACCCTGCCATAATTGATTCAACTTCAAATATCGAAAGTTGATGCAATCTAATCACCTTGATGCTATTGTGTATTATTCTATATTGGGTTTTCTCTCTGAAGTATCTTAAACTGATTACATGTAATTTAGTTGATCCTACTGAACTAGAATATATTGAATCCCGAATTTCACTGTTTTTATGTTTTGTCTTGTATGTAACTGGCTATACGTAATTAGGTTCATGCTCCCATAATAAACTGTGCTGGCTTGTTGTTCTTAACTGTGATATACATGTCTGCTGGTTTTAGTGGTTCATTTTGAATTAACACTCGTCGTACATGCTGCAGTTGGAGCTGAGGCTGATGATGATAGGATTCAACTACTACTCTCTCAAGTTGAGGGCAAAGATATCACTGAGTTGATTGCTGCCGGCAGAGAAAAATTGGCTTCAGTACCTGCTGGTGGAGGTGCTGCTTGTGCAGTTGCTGCACCTGGTGGTGGCGGTGCTGCACCTGCTGCTGAGGAGAAGAAGGAAGAAAAGAAAGTGGAAGAAAAAGAAGAGTCAGACGATGACATGGGTTTCAGTCTTTTCGATTAGAAGTCGAAGAAATCAGTTTATGAAGTATCCCCTTTTCCATTTGTTGTTCCCCTTGAGAGTGTATTTTAGGAGGTTTATTGTCTACTTACAGATTTTGCTTGAACTTAGAATTTTCATGGAAAACATTTGCAAACAGTTGAAATTATAATATGTATTTCAAATGTTCAGCTTGGTTCAATATATCTACCCTTTTTGATCTTACAATATTAAAACAATGGCTTAAGTCATCTACAGCCCCTTAAAGTTGTTCGTATATTTCATTTGAACACCTTAACTACAACATGTACCTATTAAACATCTCTACCGAATCGAATTATAACCATTTGAGCATTTTTTTGACAATCAGCTAAAAATATAAAATGAGTGTAGTACACTCGTGCCGACATAGAGATTTGTCAAATAAATGGTGCATATATGGCATTTTGAGTTATTTCTTGAGTCAAAGTAACAACTAAAAAGTTATGACCAAAATAAAGGAAAAACTCTTCAATTTTTTTTTATAAAATGTCCCTGTACATACATCTCTTTCACCATCACAACTCGTTTTCTCATAATTCAACAATGGAAAAAGTCCAAGGAAAATCAACAATTAATTGTGAAATTGAGTTATTATTTTAGTGAAATAATTTTCTAACACTTACAAAGAAAAGCCAAGAAATAAACTTTTCTTCTTCATTTGTATGAATCAACAATGACAAATCATTAAATTCAAAAAAATAAATAAAAAT</genome_strand>
        <mrna_strand>CGTCTTGGGTGGCAACACCTCCCCTTCAGAGAAGGATTTGAAGAAAATCCTTGCATCTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAGCTGAGGCTGATGATGATAGGATTCAACTACTACTCTCTCAAGTTGAGGGCAAAGATATCACTGAGTTGATTGCTGCCGGCAGAGAAAAATTGGCTTCAGTACCTGCTGGTGGAGGTGCTGCTTGTGCAGTTGCTGCACCTGGTGGTGGCGGTGCTGCACCTGCTGCTGAGGAGAAGAAGGAAGAAAAGAAAGTGGAAGAAAAAGAAGAGTCAGACGATGACATGGGTTTCAGTCTTTTCGATTAGAAGTCGAAGAAATCAGTTTATGAAGTATCCCCTTTTCCATTTGTTGTTCCCCTTGAGAGTGTATTTTAGGAGGTTTATTGTCTACTTACAGATTTTGCTTGAACTTAGAATTTTCATGGAAAACATTTGCAAACAGTTGAAATTATAATATGTATTTCAAATGTTC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E225474" ref_strand="+" ref_description="SGN-E225474 [cLEL-17-M23](-)">
      <seq>ccctcagagaaggatttgaagaaaatccttgcatctgttggagctgaggctgatgatgataggattcaactactactctctcaagttgagggcaaagatatcactgagttgattgctgccggcagagaaaaattggcttcagtacctgctggtggaggtgctgcttgtgcagttgctgcacctggtggtggcggtgctgcacctgctgctgaggagaagaaggaagaaaagaaagtggaagaaaaagaagagtcagacgatgacatgggtttcagtcttttcgattagaagtcgaagaaatcagtttatgaagtatccccttttccatttgttgttccccttgagagtgtattttaggaggtttattgtctacttacagattttgcttgaacttagaattttcatggaaaacatttgcaaacagttgaaattataatatgtatttcaaatgttcaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0099A03.1" temp_strand="+" temp_description="C06SLm0099A03.1  AC226730.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0099A03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="21215" stop="23260"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21515" g_stop="21551" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21552" i_stop="22542" i_length="991">
            <donor d_prob="0.972" d_score="0.00"/>
            <acceptor a_prob="0.511" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22543" g_stop="22960" g_length="418"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="455" r_length="418" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="456" polyA_stop="473"/>
      <MATCH_line gen_id="C06SLm0099A03.1" gen_strand="+" ref_id="SGN-E225474" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>455</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0099A03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E225474" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21515" e_stop="21551"/>
          <exon e_start="22543" e_stop="22960"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTCAGAGAAGGATTTGAAGAAAATCCTTGCATCTGGTACGACCTTAGAGCCCATCTTACGGTTTTGTTGCATATGGATCCGAAATGTGTTGCCATTTATATATAACTCTATAGCGATTGATACGTGAAGTTATTTATTAGTATGTCTATGTAGTTGGTTTATGTGCCTAAATTACTTGTGCGATTTAGCTCAATTGCTAGAGATTAGATAATATTAGCGACAATGAGAGAAGTGCCAGCTTATATTGTGACAATTTTACTTGTGATTGTAATAGAGGTAGCTGAAGAAAATATTGTAGGAATGGTGAAAAAATAGTTTGGTAGAGATTTTTCAGAAATTGGAATTGTTTGAAGTGTGTGAAAGTTATATACTAGTTCATATAAGTGAATTAGGGTTAAATATTTTGGGATCTAGGGAAACCCTTGAATGCCGAGTGTGTAAATTGGGACTGAAGAGTAGTTAGGGGTTATGGAATAGCATCAAGTTAAACTCGTTCCTTGCCTTCGTTCAAGTTACCAGGTTTAGTAGTGGCTATTATGACCATGGGTAAAGTTTATTATTTTCGTTTTTCATGGTTCTCAAAGTAAGTTTGAGTTAGTCTGCAATGATGCCTGCGTAAGTTTATCCGTCTTGTGCCCTACCTGCTTGACCTGTCTGGAAGAAAAGTACACTGTAATACTTGTTTTCTTTTGCATTAAGAACCCTGCCATAATTGATTCAACTTCAAATATCGAAAGTTGATGCAATCTAATCACCTTGATGCTATTGTGTATTATTCTATATTGGGTTTTCTCTCTGAAGTATCTTAAACTGATTACATGTAATTTAGTTGATCCTACTGAACTAGAATATATTGAATCCCGAATTTCACTGTTTTTATGTTTTGTCTTGTATGTAACTGGCTATACGTAATTAGGTTCATGCTCCCATAATAAACTGTGCTGGCTTGTTGTTCTTAACTGTGATATACATGTCTGCTGGTTTTAGTGGTTCATTTTGAATTAACACTCGTCGTACATGCTGCAGTTGGAGCTGAGGCTGATGATGATAGGATTCAACTACTACTCTCTCAAGTTGAGGGCAAAGATATCACTGAGTTGATTGCTGCCGGCAGAGAAAAATTGGCTTCAGTACCTGCTGGTGGAGGTGCTGCTTGTGCAGTTGCTGCACCTGGTGGTGGCGGTGCTGCACCTGCTGCTGAGGAGAAGAAGGAAGAAAAGAAAGTGGAAGAAAAAGAAGAGTCAGACGATGACATGGGTTTCAGTCTTTTCGATTAGAAGTCGAAGAAATCAGTTTATGAAGTATCCCCTTTTCCATTTGTTGTTCCCCTTGAGAGTGTATTTTAGGAGGTTTATTGTCTACTTACAGATTTTGCTTGAACTTAGAATTTTCATGGAAAACATTTGCAAACAGTTGAAATTATAATATGTATTTCAAATGTTCA</genome_strand>
        <mrna_strand>CCCTCAGAGAAGGATTTGAAGAAAATCCTTGCATCTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAGCTGAGGCTGATGATGATAGGATTCAACTACTACTCTCTCAAGTTGAGGGCAAAGATATCACTGAGTTGATTGCTGCCGGCAGAGAAAAATTGGCTTCAGTACCTGCTGGTGGAGGTGCTGCTTGTGCAGTTGCTGCACCTGGTGGTGGCGGTGCTGCACCTGCTGCTGAGGAGAAGAAGGAAGAAAAGAAAGTGGAAGAAAAAGAAGAGTCAGACGATGACATGGGTTTCAGTCTTTTCGATTAGAAGTCGAAGAAATCAGTTTATGAAGTATCCCCTTTTCCATTTGTTGTTCCCCTTGAGAGTGTATTTTAGGAGGTTTATTGTCTACTTACAGATTTTGCTTGAACTTAGAATTTTCATGGAAAACATTTGCAAACAGTTGAAATTATAATATGTATTTCAAATGTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E222996" ref_strand="+" ref_description="SGN-E222996 [cLEL-14-J18](-)">
      <seq>atttgaagaaaatccttgcatctgttggagctgaggctgatgatgataggattcaactactactctctcaagttgagggcaaagatatcactgagttgattgctgccggcagagaaaaattggcttcagtacctgctggtggaggtgctgcttgtgcagttgctgcacctggtggtggcggtgctgcacctgctgctgaggagaagaaggaagaaaagaaagtggaagaaaaacaagagtcagacgatgacatgggtttcagtcttttcgattagaagtcgaagaaatcagtttatgaagtatccccttttccatttgttgttccccttgagagtgtattttaggaggtttattgtctacattcagattttgcttgaacttagaattttcatgaaaaacatttgcaaacagttgaaattataatatgaatttcaaatgttcaacaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0099A03.1" temp_strand="+" temp_description="C06SLm0099A03.1  AC226730.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0099A03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="21228" stop="23262"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21528" g_stop="21551" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="24" r_length="24" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21552" i_stop="22542" i_length="991">
            <donor d_prob="0.972" d_score="0.00"/>
            <acceptor a_prob="0.511" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22543" g_stop="22960" g_length="418"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="442" r_length="418" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="443" polyA_stop="458"/>
      <MATCH_line gen_id="C06SLm0099A03.1" gen_strand="+" ref_id="SGN-E222996" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>442</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0099A03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E222996" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21528" e_stop="21551"/>
          <exon e_start="22543" e_stop="22960"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGAAGAAAATCCTTGCATCTGGTACGACCTTAGAGCCCATCTTACGGTTTTGTTGCATATGGATCCGAAATGTGTTGCCATTTATATATAACTCTATAGCGATTGATACGTGAAGTTATTTATTAGTATGTCTATGTAGTTGGTTTATGTGCCTAAATTACTTGTGCGATTTAGCTCAATTGCTAGAGATTAGATAATATTAGCGACAATGAGAGAAGTGCCAGCTTATATTGTGACAATTTTACTTGTGATTGTAATAGAGGTAGCTGAAGAAAATATTGTAGGAATGGTGAAAAAATAGTTTGGTAGAGATTTTTCAGAAATTGGAATTGTTTGAAGTGTGTGAAAGTTATATACTAGTTCATATAAGTGAATTAGGGTTAAATATTTTGGGATCTAGGGAAACCCTTGAATGCCGAGTGTGTAAATTGGGACTGAAGAGTAGTTAGGGGTTATGGAATAGCATCAAGTTAAACTCGTTCCTTGCCTTCGTTCAAGTTACCAGGTTTAGTAGTGGCTATTATGACCATGGGTAAAGTTTATTATTTTCGTTTTTCATGGTTCTCAAAGTAAGTTTGAGTTAGTCTGCAATGATGCCTGCGTAAGTTTATCCGTCTTGTGCCCTACCTGCTTGACCTGTCTGGAAGAAAAGTACACTGTAATACTTGTTTTCTTTTGCATTAAGAACCCTGCCATAATTGATTCAACTTCAAATATCGAAAGTTGATGCAATCTAATCACCTTGATGCTATTGTGTATTATTCTATATTGGGTTTTCTCTCTGAAGTATCTTAAACTGATTACATGTAATTTAGTTGATCCTACTGAACTAGAATATATTGAATCCCGAATTTCACTGTTTTTATGTTTTGTCTTGTATGTAACTGGCTATACGTAATTAGGTTCATGCTCCCATAATAAACTGTGCTGGCTTGTTGTTCTTAACTGTGATATACATGTCTGCTGGTTTTAGTGGTTCATTTTGAATTAACACTCGTCGTACATGCTGCAGTTGGAGCTGAGGCTGATGATGATAGGATTCAACTACTACTCTCTCAAGTTGAGGGCAAAGATATCACTGAGTTGATTGCTGCCGGCAGAGAAAAATTGGCTTCAGTACCTGCTGGTGGAGGTGCTGCTTGTGCAGTTGCTGCACCTGGTGGTGGCGGTGCTGCACCTGCTGCTGAGGAGAAGAAGGAAGAAAAGAAAGTGGAAGAAAAAGAAGAGTCAGACGATGACATGGGTTTCAGTCTTTTCGATTAGAAGTCGAAGAAATCAGTTTATGAAGTATCCCCTTTTCCATTTGTTGTTCCCCTTGAGAGTGTATTTTAGGAGGTTTATTGTCTACTTACAGATTTTGCTTGAACTTAGAATTTTCATGGAAAACATTTGCAAACAGTTGAAATTATAATATGTATTTCAAATGTTCA</genome_strand>
        <mrna_strand>ATTTGAAGAAAATCCTTGCATCTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAGCTGAGGCTGATGATGATAGGATTCAACTACTACTCTCTCAAGTTGAGGGCAAAGATATCACTGAGTTGATTGCTGCCGGCAGAGAAAAATTGGCTTCAGTACCTGCTGGTGGAGGTGCTGCTTGTGCAGTTGCTGCACCTGGTGGTGGCGGTGCTGCACCTGCTGCTGAGGAGAAGAAGGAAGAAAAGAAAGTGGAAGAAAAACAAGAGTCAGACGATGACATGGGTTTCAGTCTTTTCGATTAGAAGTCGAAGAAATCAGTTTATGAAGTATCCCCTTTTCCATTTGTTGTTCCCCTTGAGAGTGTATTTTAGGAGGTTTATTGTCTACATTCAGATTTTGCTTGAACTTAGAATTTTCATGAAAAACATTTGCAAACAGTTGAAATTATAATATGAATTTCAAATGTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E604425" ref_strand="+" ref_description="SGN-E604425 [74560]">
      <seq>attgaaccaagctgaacatttgaaatacatattataatttcaactgtttaccaatgttttccatgaaaattctaagttcaagcaaaatctgtaagtagcaataaacctcctaaaatacactcaaggggaacaacaaatggaaaaggggacaacacttcataaactgaattcttcgacttcttctaatcgaaaagactgaagcccatgtcatcatctgactcctctttttcttccactttcttttcttccttcttctccgcagcagcaggtgcagcagcaccgccaccaccaggtgcagcaactgcacaagcagcacctccaccagcaggtactgaagccaacttttctctgccggcagcaatcagctcagtgaatatctttggcctcaacttgagaagagaagaagttgaatcctatcatcatcagcctcagttccaacagatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0099A03.1" temp_strand="-" temp_description="C06SLm0099A03.1  AC226730.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0099A03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="23272" stop="22240"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22972" g_stop="22537" g_length="436"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="444" r_length="444" r_score="0.904"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0099A03.1" gen_strand="-" ref_id="SGN-E604425" ref_strand="+">
        <total_alignment_score>0.904</total_alignment_score>
        <cumulative_length_of_scored_exons>436</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0099A03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E604425" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22972" e_stop="22537"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGAACCAAGCTGAACATTTGAAATACATATTATAATTTCAACTGTTTGCAAATGTTTTCCATGAAAATTCTAAGTTCAAGCAAAATCTGTAAGTAGACAATAAACCTCCTAAAATACACTCTCAAGGGGAACAACAAATGGAAAAGGGG---ATACTTCATAAACTGATTTCTTCGA---CTTCTAATCGAAAAGACTGAAACCCATGTCATCGTCTGACTCTTCTTTTTCTTCCACTTTCTTTTCTTCCTTCTTCTCCTCAGCAGCAGGT---GCAGCACCGCCACCACCAGGTGCAGCAACTGCACAAGCAGCACCTCCACCAGCAGGTACTGAAGCCAATTTTTCTCTGCCGGCAGCAATCAACTCAGTG-ATATCTTTGCCCTCAACTTGAG-AGAGTAGTAGTTGAATCCTATCATCATCAGCCTCAGCTCCAACTGCAG</genome_strand>
        <mrna_strand>ATTGAACCAAGCTGAACATTTGAAATACATATTATAATTTCAACTGTTTACCAATGTTTTCCATGAAAATTCTAAGTTCAAGCAAAATCTGTAAGTAG-CAATAAACCTCCTAAAATACA--CTCAAGGGGAACAACAAATGGAAAAGGGGACAACACTTCATAAACTGAATTCTTCGACTTCTTCTAATCGAAAAGACTGAAGCCCATGTCATCATCTGACTCCTCTTTTTCTTCCACTTTCTTTTCTTCCTTCTTCTCCGCAGCAGCAGGTGCAGCAGCACCGCCACCACCAGGTGCAGCAACTGCACAAGCAGCACCTCCACCAGCAGGTACTGAAGCCAACTTTTCTCTGCCGGCAGCAATCAGCTCAGTGAATATCTTTGGCCTCAACTTGAGAAGAGAAGAAGTTGAATCCTATCATCATCAGCCTCAGTTCCAACAGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E223361" ref_strand="+" ref_description="SGN-E223361 [cLEL-14-J18](-)">
      <seq>ggctgatgatgataggattcaactactactctctcaagttgagggcaaagatatcactgagttgattgctgccggcagagaaaaattggcttcagtacctgctggtggaggtgctgcttgtgcagttgctgcacctggtggtggcggtgctgcacctgctgctgaggagaagaaggaagaaaagaaagtggaagaaaaagaagagtcagacgatgacatgggtttcagtcttttcgattagaagtcgaagaaatcagtttatgaagtatccccttttccatttgttgttccccctgagagtgtattttagccggtttactgtcttctttcagattttgcttgcacttagaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0099A03.1" temp_strand="+" temp_description="C06SLm0099A03.1  AC226730.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0099A03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="22253" stop="23204"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22553" g_stop="22904" g_length="352"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="352" r_length="352" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0099A03.1" gen_strand="+" ref_id="SGN-E223361" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>352</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0099A03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E223361" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22553" e_stop="22904"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCTGATGATGATAGGATTCAACTACTACTCTCTCAAGTTGAGGGCAAAGATATCACTGAGTTGATTGCTGCCGGCAGAGAAAAATTGGCTTCAGTACCTGCTGGTGGAGGTGCTGCTTGTGCAGTTGCTGCACCTGGTGGTGGCGGTGCTGCACCTGCTGCTGAGGAGAAGAAGGAAGAAAAGAAAGTGGAAGAAAAAGAAGAGTCAGACGATGACATGGGTTTCAGTCTTTTCGATTAGAAGTCGAAGAAATCAGTTTATGAAGTATCCCCTTTTCCATTTGTTGTTCCCCTTGAGAGTGTATTTTAGGAGGTTTATTGTCTACTTACAGATTTTGCTTGAACTTAGAAT</genome_strand>
        <mrna_strand>GGCTGATGATGATAGGATTCAACTACTACTCTCTCAAGTTGAGGGCAAAGATATCACTGAGTTGATTGCTGCCGGCAGAGAAAAATTGGCTTCAGTACCTGCTGGTGGAGGTGCTGCTTGTGCAGTTGCTGCACCTGGTGGTGGCGGTGCTGCACCTGCTGCTGAGGAGAAGAAGGAAGAAAAGAAAGTGGAAGAAAAAGAAGAGTCAGACGATGACATGGGTTTCAGTCTTTTCGATTAGAAGTCGAAGAAATCAGTTTATGAAGTATCCCCTTTTCCATTTGTTGTTCCCCCTGAGAGTGTATTTTAGCCGGTTTACTGTCTTCTTTCAGATTTTGCTTGCACTTAGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E352874" ref_strand="+" ref_description="SGN-E352874 [cTOS-11-D1]">
      <seq>gctgatgatgataggattcaactactactctctcaagttgagggcaaagatatcactgagttgattgctgccggcagagaaaaattggcttcagtacctgctggtggaggtgctgcttgtgcagttgctgcacctggtggtggcggtgctgcacctgctgctgaggagaagaaggaagaaaagaaagtggaagaaaaagaagagtcagacgatgacatgggtttcagtcttttcgattagaagtcgaagaaatcagtttatgaagtatccccttttccatttgttgttccccttgagagtgtattttaggaggtttattgtctacttacagattttgcttgaacttagaattttcatggaaaacatttgcaaacagttgaaattataatatgtatttcaaatgttcagcttggttcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0099A03.1" temp_strand="+" temp_description="C06SLm0099A03.1  AC226730.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0099A03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="22254" stop="23275"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22554" g_stop="22980" g_length="427"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="427" r_length="427" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0099A03.1" gen_strand="+" ref_id="SGN-E352874" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>427</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0099A03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352874" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22554" e_stop="22980"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGATGATGATAGGATTCAACTACTACTCTCTCAAGTTGAGGGCAAAGATATCACTGAGTTGATTGCTGCCGGCAGAGAAAAATTGGCTTCAGTACCTGCTGGTGGAGGTGCTGCTTGTGCAGTTGCTGCACCTGGTGGTGGCGGTGCTGCACCTGCTGCTGAGGAGAAGAAGGAAGAAAAGAAAGTGGAAGAAAAAGAAGAGTCAGACGATGACATGGGTTTCAGTCTTTTCGATTAGAAGTCGAAGAAATCAGTTTATGAAGTATCCCCTTTTCCATTTGTTGTTCCCCTTGAGAGTGTATTTTAGGAGGTTTATTGTCTACTTACAGATTTTGCTTGAACTTAGAATTTTCATGGAAAACATTTGCAAACAGTTGAAATTATAATATGTATTTCAAATGTTCAGCTTGGTTCAATATATCTAC</genome_strand>
        <mrna_strand>GCTGATGATGATAGGATTCAACTACTACTCTCTCAAGTTGAGGGCAAAGATATCACTGAGTTGATTGCTGCCGGCAGAGAAAAATTGGCTTCAGTACCTGCTGGTGGAGGTGCTGCTTGTGCAGTTGCTGCACCTGGTGGTGGCGGTGCTGCACCTGCTGCTGAGGAGAAGAAGGAAGAAAAGAAAGTGGAAGAAAAAGAAGAGTCAGACGATGACATGGGTTTCAGTCTTTTCGATTAGAAGTCGAAGAAATCAGTTTATGAAGTATCCCCTTTTCCATTTGTTGTTCCCCTTGAGAGTGTATTTTAGGAGGTTTATTGTCTACTTACAGATTTTGCTTGAACTTAGAATTTTCATGGAAAACATTTGCAAACAGTTGAAATTATAATATGTATTTCAAATGTTCAGCTTGGTTCAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E353175" ref_strand="+" ref_description="SGN-E353175 [cTOS-14-C10]">
      <seq>gctgatgatgataggattcaactactactctctcaagttgagggcaaagatatcactgagttgattgctgccggcagagaaaaattggcttcagtacctgctggtggaggtgctgcttgtgcagttgctgcacctggtggtggcggtgctgcacctgctgctgaggagaagaaggaagaaaagaaagtggaagaaaaagaagagtcagacgatgacatgggtttcagtcttttcgattagaagtcgaagaaatcagtttatgaagtatccccttttccatttgttgttccccttgagagtgtattttaggaggtttattgtctacttacagattttgcttgaacttagaattttcatggaaaacatttgcaaacagttgaaattataatatgtatttcaaatgttcagcttggttcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0099A03.1" temp_strand="+" temp_description="C06SLm0099A03.1  AC226730.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0099A03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="22254" stop="23275"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22554" g_stop="22980" g_length="427"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="427" r_length="427" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0099A03.1" gen_strand="+" ref_id="SGN-E353175" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>427</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0099A03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E353175" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22554" e_stop="22980"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGATGATGATAGGATTCAACTACTACTCTCTCAAGTTGAGGGCAAAGATATCACTGAGTTGATTGCTGCCGGCAGAGAAAAATTGGCTTCAGTACCTGCTGGTGGAGGTGCTGCTTGTGCAGTTGCTGCACCTGGTGGTGGCGGTGCTGCACCTGCTGCTGAGGAGAAGAAGGAAGAAAAGAAAGTGGAAGAAAAAGAAGAGTCAGACGATGACATGGGTTTCAGTCTTTTCGATTAGAAGTCGAAGAAATCAGTTTATGAAGTATCCCCTTTTCCATTTGTTGTTCCCCTTGAGAGTGTATTTTAGGAGGTTTATTGTCTACTTACAGATTTTGCTTGAACTTAGAATTTTCATGGAAAACATTTGCAAACAGTTGAAATTATAATATGTATTTCAAATGTTCAGCTTGGTTCAATATATCTAC</genome_strand>
        <mrna_strand>GCTGATGATGATAGGATTCAACTACTACTCTCTCAAGTTGAGGGCAAAGATATCACTGAGTTGATTGCTGCCGGCAGAGAAAAATTGGCTTCAGTACCTGCTGGTGGAGGTGCTGCTTGTGCAGTTGCTGCACCTGGTGGTGGCGGTGCTGCACCTGCTGCTGAGGAGAAGAAGGAAGAAAAGAAAGTGGAAGAAAAAGAAGAGTCAGACGATGACATGGGTTTCAGTCTTTTCGATTAGAAGTCGAAGAAATCAGTTTATGAAGTATCCCCTTTTCCATTTGTTGTTCCCCTTGAGAGTGTATTTTAGGAGGTTTATTGTCTACTTACAGATTTTGCTTGAACTTAGAATTTTCATGGAAAACATTTGCAAACAGTTGAAATTATAATATGTATTTCAAATGTTCAGCTTGGTTCAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E349710" ref_strand="+" ref_description="SGN-E349710 [cTOS-3-D18]">
      <seq>gatgataggattcaactactactctctcaagttgagggcaaagatatcactgagttgattgctgccggcagagaaaaattggcttcagtacctgctggtggaggtgctgcttgtgcagttgctgcacctggtggtggcggtgctgcacctgctgctgaggagaagaaggaagaaaagaaagtggaagaaaaagaagagtcagacgatgacatgggtttcagtcttttcgattagaagtcgaagaaatcagtttatgaagtatccccttttccatttgttgttccccttgagagtgtattttaggaggtttattgtctacttacagattttgcttgaacttagaattttcatggaaaacatttgcaaacagttgaaattataatatgtatttcaaatgttcagcttggttcaataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0099A03.1" temp_strand="+" temp_description="C06SLm0099A03.1  AC226730.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0099A03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="22260" stop="23275"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22560" g_stop="22972" g_length="413"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="413" r_length="413" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="414" polyA_stop="423"/>
      <MATCH_line gen_id="C06SLm0099A03.1" gen_strand="+" ref_id="SGN-E349710" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>413</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0099A03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E349710" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22560" e_stop="22972"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGATAGGATTCAACTACTACTCTCTCAAGTTGAGGGCAAAGATATCACTGAGTTGATTGCTGCCGGCAGAGAAAAATTGGCTTCAGTACCTGCTGGTGGAGGTGCTGCTTGTGCAGTTGCTGCACCTGGTGGTGGCGGTGCTGCACCTGCTGCTGAGGAGAAGAAGGAAGAAAAGAAAGTGGAAGAAAAAGAAGAGTCAGACGATGACATGGGTTTCAGTCTTTTCGATTAGAAGTCGAAGAAATCAGTTTATGAAGTATCCCCTTTTCCATTTGTTGTTCCCCTTGAGAGTGTATTTTAGGAGGTTTATTGTCTACTTACAGATTTTGCTTGAACTTAGAATTTTCATGGAAAACATTTGCAAACAGTTGAAATTATAATATGTATTTCAAATGTTCAGCTTGGTTCAAT</genome_strand>
        <mrna_strand>GATGATAGGATTCAACTACTACTCTCTCAAGTTGAGGGCAAAGATATCACTGAGTTGATTGCTGCCGGCAGAGAAAAATTGGCTTCAGTACCTGCTGGTGGAGGTGCTGCTTGTGCAGTTGCTGCACCTGGTGGTGGCGGTGCTGCACCTGCTGCTGAGGAGAAGAAGGAAGAAAAGAAAGTGGAAGAAAAAGAAGAGTCAGACGATGACATGGGTTTCAGTCTTTTCGATTAGAAGTCGAAGAAATCAGTTTATGAAGTATCCCCTTTTCCATTTGTTGTTCCCCTTGAGAGTGTATTTTAGGAGGTTTATTGTCTACTTACAGATTTTGCTTGAACTTAGAATTTTCATGGAAAACATTTGCAAACAGTTGAAATTATAATATGTATTTCAAATGTTCAGCTTGGTTCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E357570" ref_strand="+" ref_description="SGN-E357570 [cTOS-23-H20]">
      <seq>gatgataggattcaactactactctctcaagttgagggcaaagatatcactgagttgattgctgccggcagagaaaaattggcttcagtacctgctggtggaggtgctgcttgtgcagttgctgcacctggtggtggcggtgctgcacctgctgctgaggagaagaaggaagaaaagaaagtggaagaaaaagaagagtcagacgatgacatgggtttcagtcttttcgattagaagtcgaagaaatcagtttatgaagtatccccttttccatttgttgttccccttgagagtgtattttaggaggtttattgtctacttacagattttgcttgaacttagaattttcatggaaaacatttgcaaacagttgaaattataatatgtatttcaaatgttcagcttggttcaataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0099A03.1" temp_strand="+" temp_description="C06SLm0099A03.1  AC226730.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0099A03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="22260" stop="23275"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22560" g_stop="22972" g_length="413"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="413" r_length="413" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="414" polyA_stop="423"/>
      <MATCH_line gen_id="C06SLm0099A03.1" gen_strand="+" ref_id="SGN-E357570" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>413</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0099A03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E357570" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22560" e_stop="22972"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGATAGGATTCAACTACTACTCTCTCAAGTTGAGGGCAAAGATATCACTGAGTTGATTGCTGCCGGCAGAGAAAAATTGGCTTCAGTACCTGCTGGTGGAGGTGCTGCTTGTGCAGTTGCTGCACCTGGTGGTGGCGGTGCTGCACCTGCTGCTGAGGAGAAGAAGGAAGAAAAGAAAGTGGAAGAAAAAGAAGAGTCAGACGATGACATGGGTTTCAGTCTTTTCGATTAGAAGTCGAAGAAATCAGTTTATGAAGTATCCCCTTTTCCATTTGTTGTTCCCCTTGAGAGTGTATTTTAGGAGGTTTATTGTCTACTTACAGATTTTGCTTGAACTTAGAATTTTCATGGAAAACATTTGCAAACAGTTGAAATTATAATATGTATTTCAAATGTTCAGCTTGGTTCAAT</genome_strand>
        <mrna_strand>GATGATAGGATTCAACTACTACTCTCTCAAGTTGAGGGCAAAGATATCACTGAGTTGATTGCTGCCGGCAGAGAAAAATTGGCTTCAGTACCTGCTGGTGGAGGTGCTGCTTGTGCAGTTGCTGCACCTGGTGGTGGCGGTGCTGCACCTGCTGCTGAGGAGAAGAAGGAAGAAAAGAAAGTGGAAGAAAAAGAAGAGTCAGACGATGACATGGGTTTCAGTCTTTTCGATTAGAAGTCGAAGAAATCAGTTTATGAAGTATCCCCTTTTCCATTTGTTGTTCCCCTTGAGAGTGTATTTTAGGAGGTTTATTGTCTACTTACAGATTTTGCTTGAACTTAGAATTTTCATGGAAAACATTTGCAAACAGTTGAAATTATAATATGTATTTCAAATGTTCAGCTTGGTTCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E219976" ref_strand="+" ref_description="SGN-E219976 [cLEL-24-E7](-)">
      <seq>taggattcaactactactctctcaagttgagggcaaagatatcactgagttgattgctgccggcagagaaaaattggcttcagtacctgttggtgaaggtgctgcttgtgcagttgctgcacctggtggtggcggtgctgcacctgctgctgaggagaagaaggaagaaaagaaagtggaagaaaaagaagagtcagacgatgacatgggtttcagtcttttcgattagaagtcgaagaaatcagtttatgaagtatccccttttccatttgttgttccccttgagagtgtattttaggaggtttattgtctacttacagattttgcttgaacttagaattttcatggaaaacatttgcaaacagttgaaattataatatgtatttcaaatgttcagcttggttcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0099A03.1" temp_strand="+" temp_description="C06SLm0099A03.1  AC226730.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0099A03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="22265" stop="23275"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22565" g_stop="22970" g_length="406"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="406" r_length="406" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="407" polyA_stop="422"/>
      <MATCH_line gen_id="C06SLm0099A03.1" gen_strand="+" ref_id="SGN-E219976" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>406</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0099A03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E219976" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22565" e_stop="22970"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGGATTCAACTACTACTCTCTCAAGTTGAGGGCAAAGATATCACTGAGTTGATTGCTGCCGGCAGAGAAAAATTGGCTTCAGTACCTGCTGGTGGAGGTGCTGCTTGTGCAGTTGCTGCACCTGGTGGTGGCGGTGCTGCACCTGCTGCTGAGGAGAAGAAGGAAGAAAAGAAAGTGGAAGAAAAAGAAGAGTCAGACGATGACATGGGTTTCAGTCTTTTCGATTAGAAGTCGAAGAAATCAGTTTATGAAGTATCCCCTTTTCCATTTGTTGTTCCCCTTGAGAGTGTATTTTAGGAGGTTTATTGTCTACTTACAGATTTTGCTTGAACTTAGAATTTTCATGGAAAACATTTGCAAACAGTTGAAATTATAATATGTATTTCAAATGTTCAGCTTGGTTCA</genome_strand>
        <mrna_strand>TAGGATTCAACTACTACTCTCTCAAGTTGAGGGCAAAGATATCACTGAGTTGATTGCTGCCGGCAGAGAAAAATTGGCTTCAGTACCTGTTGGTGAAGGTGCTGCTTGTGCAGTTGCTGCACCTGGTGGTGGCGGTGCTGCACCTGCTGCTGAGGAGAAGAAGGAAGAAAAGAAAGTGGAAGAAAAAGAAGAGTCAGACGATGACATGGGTTTCAGTCTTTTCGATTAGAAGTCGAAGAAATCAGTTTATGAAGTATCCCCTTTTCCATTTGTTGTTCCCCTTGAGAGTGTATTTTAGGAGGTTTATTGTCTACTTACAGATTTTGCTTGAACTTAGAATTTTCATGGAAAACATTTGCAAACAGTTGAAATTATAATATGTATTTCAAATGTTCAGCTTGGTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E229171" ref_strand="+" ref_description="SGN-E229171 [cLEL-29-J21](-)">
      <seq>ttcaactactactctctaagttgagggcaaagatatcactgagttgattgctgccggcagagaaaaattggcttcagtacctgctggtggaggtgctgcttgtgcagttgctgcacctggtggtggcggtgctgcacctgctgctgaggagaagaaggaagaaaagaaagtggaagaaaaagaagagtcagacgatgacatgggtttcagtcttttcgattagaagtcgaagaaatcagtttatgaagtatccccttttccatttgttgttccccttgagagtgtattttaggaggtttattgtctacttacagattttgcttgaacttagaattttcatggaaaacatttgcaaacagttgaaattataatatgtatttcaaatgttcaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0099A03.1" temp_strand="+" temp_description="C06SLm0099A03.1  AC226730.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0099A03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="22270" stop="23260"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22570" g_stop="22960" g_length="391"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="390" r_length="390" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="391" polyA_stop="409"/>
      <MATCH_line gen_id="C06SLm0099A03.1" gen_strand="+" ref_id="SGN-E229171" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>391</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0099A03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E229171" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22570" e_stop="22960"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAACTACTACTCTCTCAAGTTGAGGGCAAAGATATCACTGAGTTGATTGCTGCCGGCAGAGAAAAATTGGCTTCAGTACCTGCTGGTGGAGGTGCTGCTTGTGCAGTTGCTGCACCTGGTGGTGGCGGTGCTGCACCTGCTGCTGAGGAGAAGAAGGAAGAAAAGAAAGTGGAAGAAAAAGAAGAGTCAGACGATGACATGGGTTTCAGTCTTTTCGATTAGAAGTCGAAGAAATCAGTTTATGAAGTATCCCCTTTTCCATTTGTTGTTCCCCTTGAGAGTGTATTTTAGGAGGTTTATTGTCTACTTACAGATTTTGCTTGAACTTAGAATTTTCATGGAAAACATTTGCAAACAGTTGAAATTATAATATGTATTTCAAATGTTCA</genome_strand>
        <mrna_strand>TTCAACTACTACTCTCT-AAGTTGAGGGCAAAGATATCACTGAGTTGATTGCTGCCGGCAGAGAAAAATTGGCTTCAGTACCTGCTGGTGGAGGTGCTGCTTGTGCAGTTGCTGCACCTGGTGGTGGCGGTGCTGCACCTGCTGCTGAGGAGAAGAAGGAAGAAAAGAAAGTGGAAGAAAAAGAAGAGTCAGACGATGACATGGGTTTCAGTCTTTTCGATTAGAAGTCGAAGAAATCAGTTTATGAAGTATCCCCTTTTCCATTTGTTGTTCCCCTTGAGAGTGTATTTTAGGAGGTTTATTGTCTACTTACAGATTTTGCTTGAACTTAGAATTTTCATGGAAAACATTTGCAAACAGTTGAAATTATAATATGTATTTCAAATGTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E216474" ref_strand="+" ref_description="SGN-E216474 [cLEL-1-M24](-)">
      <seq>ctcaagttgagggcaaagatatcactgagttgattgctgccggcagagaaaaattggcttcagtacctgctggtggaggtgctgcttgtgcagttgctgcacctggtggtggcggtgctgcacctgctgctgaggagaagaaggaagaaaagaaagtggaagaaaaagaagagtcagacgatgacatgggtttcagtcttttcgattagaagtcgaagaaatcagtttatgaagtatccccttttccatttgttgttccccttgagagtgtattttaggaggtttattgtctacttacagattttgcttgaacttagaattttcatggaaaacatttgcaaccagttgaaattataatatgtatttcaaatgttcaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0099A03.1" temp_strand="+" temp_description="C06SLm0099A03.1  AC226730.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0099A03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="22285" stop="23260"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22585" g_stop="22960" g_length="376"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="376" r_length="376" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="377" polyA_stop="393"/>
      <MATCH_line gen_id="C06SLm0099A03.1" gen_strand="+" ref_id="SGN-E216474" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>376</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0099A03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E216474" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22585" e_stop="22960"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAAGTTGAGGGCAAAGATATCACTGAGTTGATTGCTGCCGGCAGAGAAAAATTGGCTTCAGTACCTGCTGGTGGAGGTGCTGCTTGTGCAGTTGCTGCACCTGGTGGTGGCGGTGCTGCACCTGCTGCTGAGGAGAAGAAGGAAGAAAAGAAAGTGGAAGAAAAAGAAGAGTCAGACGATGACATGGGTTTCAGTCTTTTCGATTAGAAGTCGAAGAAATCAGTTTATGAAGTATCCCCTTTTCCATTTGTTGTTCCCCTTGAGAGTGTATTTTAGGAGGTTTATTGTCTACTTACAGATTTTGCTTGAACTTAGAATTTTCATGGAAAACATTTGCAAACAGTTGAAATTATAATATGTATTTCAAATGTTCA</genome_strand>
        <mrna_strand>CTCAAGTTGAGGGCAAAGATATCACTGAGTTGATTGCTGCCGGCAGAGAAAAATTGGCTTCAGTACCTGCTGGTGGAGGTGCTGCTTGTGCAGTTGCTGCACCTGGTGGTGGCGGTGCTGCACCTGCTGCTGAGGAGAAGAAGGAAGAAAAGAAAGTGGAAGAAAAAGAAGAGTCAGACGATGACATGGGTTTCAGTCTTTTCGATTAGAAGTCGAAGAAATCAGTTTATGAAGTATCCCCTTTTCCATTTGTTGTTCCCCTTGAGAGTGTATTTTAGGAGGTTTATTGTCTACTTACAGATTTTGCTTGAACTTAGAATTTTCATGGAAAACATTTGCAACCAGTTGAAATTATAATATGTATTTCAAATGTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E228691" ref_strand="+" ref_description="SGN-E228691 [cLEL-29-J21](-)">
      <seq>aaaattggcttcagtacctgctggtggaggtgctgcttgtgcagttgctgcacctggtggtggcggtgctgcacctgctgctgaggagaagaaggaagaaaagaaagtggaagaaaaagaagagtcagacgatgacatgggtttcagtcttttcgattagaagtcgaagaaatcagtttatgaagtatccccttttccatttgttgttccccttgagagtgtattttaggaggtttattgtctacttacagattttgcttgaacttagaattttcatggaaaacatttgcaaacagttgaaattataatatgtatttcaaatgttcgaccaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0099A03.1" temp_strand="+" temp_description="C06SLm0099A03.1  AC226730.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0099A03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="22334" stop="23262"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22634" g_stop="22960" g_length="327"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="327" r_length="327" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="331" polyA_stop="346"/>
      <MATCH_line gen_id="C06SLm0099A03.1" gen_strand="+" ref_id="SGN-E228691" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>327</cumulative_length_of_scored_exons>
        <coverage percentage="0.945" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0099A03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E228691" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22634" e_stop="22960"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATTGGCTTCAGTACCTGCTGGTGGAGGTGCTGCTTGTGCAGTTGCTGCACCTGGTGGTGGCGGTGCTGCACCTGCTGCTGAGGAGAAGAAGGAAGAAAAGAAAGTGGAAGAAAAAGAAGAGTCAGACGATGACATGGGTTTCAGTCTTTTCGATTAGAAGTCGAAGAAATCAGTTTATGAAGTATCCCCTTTTCCATTTGTTGTTCCCCTTGAGAGTGTATTTTAGGAGGTTTATTGTCTACTTACAGATTTTGCTTGAACTTAGAATTTTCATGGAAAACATTTGCAAACAGTTGAAATTATAATATGTATTTCAAATGTTCA</genome_strand>
        <mrna_strand>AAAATTGGCTTCAGTACCTGCTGGTGGAGGTGCTGCTTGTGCAGTTGCTGCACCTGGTGGTGGCGGTGCTGCACCTGCTGCTGAGGAGAAGAAGGAAGAAAAGAAAGTGGAAGAAAAAGAAGAGTCAGACGATGACATGGGTTTCAGTCTTTTCGATTAGAAGTCGAAGAAATCAGTTTATGAAGTATCCCCTTTTCCATTTGTTGTTCCCCTTGAGAGTGTATTTTAGGAGGTTTATTGTCTACTTACAGATTTTGCTTGAACTTAGAATTTTCATGGAAAACATTTGCAAACAGTTGAAATTATAATATGTATTTCAAATGTTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E234186" ref_strand="+" ref_description="SGN-E234186 [cLEL-8-F12](-)">
      <seq>agtacctgctggtggaggtgctgcttgtgcagttgctgcacctggtggtggcggtgctgcacctgctgctgaggagaagaaggaagaaaagaaagtggaagaaaaagaagagtcagacgatgacatgggtttcagtcttttcgattagaagtcgaagaaatcagtttatgaagtatccccttttccatttgttgttccccttgagagtgtattttaggaggtttattgtctacttacagattttgcttgaacttagaattttcatggaaaacatttgcaaacagttgaaattataatatgtatttcaaatgttcagcttggttcaatatatctaccctttttgatcttaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0099A03.1" temp_strand="+" temp_description="C06SLm0099A03.1  AC226730.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0099A03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="22346" stop="23308"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22646" g_stop="23013" g_length="368"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="368" r_length="368" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0099A03.1" gen_strand="+" ref_id="SGN-E234186" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>368</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0099A03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E234186" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22646" e_stop="23013"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTACCTGCTGGTGGAGGTGCTGCTTGTGCAGTTGCTGCACCTGGTGGTGGCGGTGCTGCACCTGCTGCTGAGGAGAAGAAGGAAGAAAAGAAAGTGGAAGAAAAAGAAGAGTCAGACGATGACATGGGTTTCAGTCTTTTCGATTAGAAGTCGAAGAAATCAGTTTATGAAGTATCCCCTTTTCCATTTGTTGTTCCCCTTGAGAGTGTATTTTAGGAGGTTTATTGTCTACTTACAGATTTTGCTTGAACTTAGAATTTTCATGGAAAACATTTGCAAACAGTTGAAATTATAATATGTATTTCAAATGTTCAGCTTGGTTCAATATATCTACCCTTTTTGATCTTACAATATTAAAACAATGGCT</genome_strand>
        <mrna_strand>AGTACCTGCTGGTGGAGGTGCTGCTTGTGCAGTTGCTGCACCTGGTGGTGGCGGTGCTGCACCTGCTGCTGAGGAGAAGAAGGAAGAAAAGAAAGTGGAAGAAAAAGAAGAGTCAGACGATGACATGGGTTTCAGTCTTTTCGATTAGAAGTCGAAGAAATCAGTTTATGAAGTATCCCCTTTTCCATTTGTTGTTCCCCTTGAGAGTGTATTTTAGGAGGTTTATTGTCTACTTACAGATTTTGCTTGAACTTAGAATTTTCATGGAAAACATTTGCAAACAGTTGAAATTATAATATGTATTTCAAATGTTCAGCTTGGTTCAATATATCTACCCTTTTTGATCTTAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E230429" ref_strand="+" ref_description="SGN-E230429 [cLEL-35-O6](-)">
      <seq>ggcacgaggacgatgacatgggtttcagtcttttcgattagaagtcgaagaaatcagtttatgaagtatccccttttccatttgttgttccccttgagagtgtattttaggaggtttattgtctacttacagattttgcttgaacttagaattttcatggaaaacatttgcaaacagttgaaattataatatgtatttcaaatgttcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0099A03.1" temp_strand="+" temp_description="C06SLm0099A03.1  AC226730.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0099A03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="22461" stop="23260"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22753" g_stop="22960" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="208" r_length="208" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="209" polyA_stop="224"/>
      <MATCH_line gen_id="C06SLm0099A03.1" gen_strand="+" ref_id="SGN-E230429" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>208</cumulative_length_of_scored_exons>
        <coverage percentage="0.929" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0099A03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E230429" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22753" e_stop="22960"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGTCAGACGATGACATGGGTTTCAGTCTTTTCGATTAGAAGTCGAAGAAATCAGTTTATGAAGTATCCCCTTTTCCATTTGTTGTTCCCCTTGAGAGTGTATTTTAGGAGGTTTATTGTCTACTTACAGATTTTGCTTGAACTTAGAATTTTCATGGAAAACATTTGCAAACAGTTGAAATTATAATATGTATTTCAAATGTTCA</genome_strand>
        <mrna_strand>GGCACGAGGACGATGACATGGGTTTCAGTCTTTTCGATTAGAAGTCGAAGAAATCAGTTTATGAAGTATCCCCTTTTCCATTTGTTGTTCCCCTTGAGAGTGTATTTTAGGAGGTTTATTGTCTACTTACAGATTTTGCTTGAACTTAGAATTTTCATGGAAAACATTTGCAAACAGTTGAAATTATAATATGTATTTCAAATGTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E230929" ref_strand="+" ref_description="SGN-E230929 [cLEL-35-O6](-)">
      <seq>ggcacgaggacgatgacatgggtttcagtcttttcgattagaagtcgaagaaatcagtttatgaagtatccccttttccatttgttgttccccttgagagtgtattttaggaggtttattgtctacttacagattttgcttgaacttagaattttcatggaaaacatttgcaaacagttgaaattataatatgtatttcaaatgttcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0099A03.1" temp_strand="+" temp_description="C06SLm0099A03.1  AC226730.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0099A03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="22461" stop="23260"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22753" g_stop="22960" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="208" r_length="208" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="209" polyA_stop="224"/>
      <MATCH_line gen_id="C06SLm0099A03.1" gen_strand="+" ref_id="SGN-E230929" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>208</cumulative_length_of_scored_exons>
        <coverage percentage="0.929" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0099A03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E230929" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22753" e_stop="22960"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGTCAGACGATGACATGGGTTTCAGTCTTTTCGATTAGAAGTCGAAGAAATCAGTTTATGAAGTATCCCCTTTTCCATTTGTTGTTCCCCTTGAGAGTGTATTTTAGGAGGTTTATTGTCTACTTACAGATTTTGCTTGAACTTAGAATTTTCATGGAAAACATTTGCAAACAGTTGAAATTATAATATGTATTTCAAATGTTCA</genome_strand>
        <mrna_strand>GGCACGAGGACGATGACATGGGTTTCAGTCTTTTCGATTAGAAGTCGAAGAAATCAGTTTATGAAGTATCCCCTTTTCCATTTGTTGTTCCCCTTGAGAGTGTATTTTAGGAGGTTTATTGTCTACTTACAGATTTTGCTTGAACTTAGAATTTTCATGGAAAACATTTGCAAACAGTTGAAATTATAATATGTATTTCAAATGTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E223660" ref_strand="-" ref_description="SGN-E223660 [cLEL-14-H8](-)">
      <seq>gttttttttttttttttttgaaagacatattataatttcaactgtatgcaaatgctttccatgaaattgctaagcacaagcttaatctgtacgttgacaataaacctcctaacttacactctcaaggggaacaacaaatggaaaaggggattcttgataaactgatttcttcgacttctaagcgaaaagactgaaaccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0099A03.1" temp_strand="-" temp_description="C06SLm0099A03.1  AC226730.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0099A03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="42074" stop="22472"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23450" g_stop="23435" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="16" r_length="16" r_score="0.625"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23434" i_stop="22955" i_length="480">
            <donor d_prob="0.198" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22954" g_stop="22772" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="199" r_length="183" r_score="0.913"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0099A03.1" gen_strand="-" ref_id="SGN-E223660" ref_strand="-">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>199</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0099A03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E223660" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="23450" e_stop="23435"/>
          <exon e_start="22954" e_stop="22772"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTGGCTTTTCTTTGTAAGTGTTAGAAAATTATTTCACTAAAATAATAACTCAATTTCACAATTAATTGTTGATTTTCCTTGGACTTTTTCCATTGTTGAATTATGAGAAAACGAGTTGTGATGGTGAAAGAGATGTATGTACAGGGACATTTTATAAAAAAAAATTGAAGAGTTTTTCCTTTATTTTGGTCATAACTTTTTAGTTGTTACTTTGACTCAAGAAATAACTCAAAATGCCATATATGCACCATTTATTTGACAAATCTCTATGTCGGCACGAGTGTACTACACTCATTTTATATTTTTAGCTGATTGTCAAAAAAATGCTCAAATGGTTATAATTCGATTCGGTAGAGATGTTTAATAGGTACATGTTGTAGTTAAGGTGTTCAAATGAAATATACGAACAACTTTAAGGGGCTGTAGATGACTTAAGCCATTGTTTTAATATTGTAAGATCAAAAAGGGTAGATATATTGAACCAAGCTGAACATTTGAAATACATATTATAATTTCAACTGTTTGCAAATGTTTTCCATGAAAATTCTAAGTTCAAGCAAAATCTGTAAGTAGACAATAAACCTCCTAAAATACACTCTCAAGGGGAACAACAAATGGAAAAGGGGATACTTCATAAACTGATTTCTTCGACTTCTAATCGAAAAGACTGAAACCC</genome_strand>
        <mrna_strand>GTTTTTTTTTTTTTTT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGAAAGACATATTATAATTTCAACTGTATGCAAATGCTTTCCATGAAATTGCTAAGCACAAGCTTAATCTGTACGTTGACAATAAACCTCCTAACTTACACTCTCAAGGGGAACAACAAATGGAAAAGGGGATTCTTGATAAACTGATTTCTTCGACTTCTAAGCGAAAAGACTGAAACCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E330557" ref_strand="+" ref_description="SGN-E330557 [cTOD-8-E8]">
      <seq>aaaatccaaagtagcaattttcggtaaagaattactcacggtgcatacgatggatgcttccgccgcagcgcggccacctttggctacccacttgcaaccatcacattctcaggtatatataactgccgacaatctccgcacgttctccgactccctcacggctttccaacaatgcttgaatgatctgcaacgacacatgaattcaatacaaacctcaatcaactctatgctgcttccccctcaatctttacctgcctcatcatcatcaccagcagttgcaaccccagccccggccctggcccctgagccagaatcatcttgggactctgacccctctgaagacctagaagaagaagaagaagtcaaccaagaggagaaagtagtgaagggagagggaggcgaggaagtgaattcgcctcacttagaactgaaattgcctccttcagaactgaaatcgcctcgtttggaactgcaattgcctccttcagaactgaaatcgcctcgtttggaactgcaattgcctccttcagaactgaaatcgcctcgtttggaactgaaattgcctccttcagaactgaaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0099A03.1" temp_strand="+" temp_description="C06SLm0099A03.1  AC226730.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0099A03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="25083" stop="26264"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25383" g_stop="25964" g_length="582"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="582" r_length="582" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0099A03.1" gen_strand="+" ref_id="SGN-E330557" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>582</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0099A03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E330557" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25383" e_stop="25964"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATCCAAAGTAGCAATTTTCGGTAAAGAATTACTCACGGTGCATACGATGGATGCTTCCGCCGCAGCGCGGCCACCTTTGGCTACCCACTTGCAACCATCACATTCTCAGGTATATATAACTGCCGACAATCTCCGCACGTTCTCCGACTCCCTCACGGCTTTCCAACAATGCTTGAATGATCTGCAACGACACATGAATTCAATACAAACCTCAATCAACTCTATGCTGCTTCCCCCTCAATCTTTACCTGCCTCATCATCATCACCAGCAGTTGCAACCCCAGCCCCGGCCCTGGCCCCTGAGCCAGAATCATCTTGGGACTCTGACCCCTCTGAAGACCTAGAAGAAGAAGAAGAAGTCAACCAAGAGGAGAAAGTAGTGAAGGGAGAGGGAGGCGAGGAAGTGAATTCGCCTCACTTAGAACTGAAATTGCCTCCTTCAGAACTGAAATCGCCTCGTTTGGAACTGCAATTGCCTCCTTCAGAACTGAAATCGCCTCGTTTGGAACTGCAATTGCCTCCTTCAGAACTGAAATCGCCTCGTTTGGAACTGAAATTGCCTCCTTCAGAACTGAAATC</genome_strand>
        <mrna_strand>AAAATCCAAAGTAGCAATTTTCGGTAAAGAATTACTCACGGTGCATACGATGGATGCTTCCGCCGCAGCGCGGCCACCTTTGGCTACCCACTTGCAACCATCACATTCTCAGGTATATATAACTGCCGACAATCTCCGCACGTTCTCCGACTCCCTCACGGCTTTCCAACAATGCTTGAATGATCTGCAACGACACATGAATTCAATACAAACCTCAATCAACTCTATGCTGCTTCCCCCTCAATCTTTACCTGCCTCATCATCATCACCAGCAGTTGCAACCCCAGCCCCGGCCCTGGCCCCTGAGCCAGAATCATCTTGGGACTCTGACCCCTCTGAAGACCTAGAAGAAGAAGAAGAAGTCAACCAAGAGGAGAAAGTAGTGAAGGGAGAGGGAGGCGAGGAAGTGAATTCGCCTCACTTAGAACTGAAATTGCCTCCTTCAGAACTGAAATCGCCTCGTTTGGAACTGCAATTGCCTCCTTCAGAACTGAAATCGCCTCGTTTGGAACTGCAATTGCCTCCTTCAGAACTGAAATCGCCTCGTTTGGAACTGAAATTGCCTCCTTCAGAACTGAAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E331893" ref_strand="+" ref_description="SGN-E331893 [cTOD-7-N12]">
      <seq>acctttgggtcggggaaggaaggctaaagtattgattttggagtgcttgttgttaatgattggaatctacgataaggaaatcgagcttgagaattgggtgaaggaagaggcggagcatacagctttagcatggttggagaggatgaattctgaaggaggaaagcctcaagaaatcgatgcccgaggtttgctcttctttattgggggttttgggattccagatcaatttacaaatgcgaatatcagaaatttgtttcaggtaagtaaccttaagtggagttgtgatgcactcaaacgatcaaacgctctcttggcgaagcttccagaaataatagaggaaatggtggcaaacaaggcagtagttaaagctgttcatattgtctatagtgttggaatgcaggagatatttaaccctaggacacttttaacaacatttataagagagtgtaagaaatcatttgataacatgaatggatcacaaagtgcacatcaagggaatattgtagcaaaagggaagtacttaggtgatctgagatcgatcatcaaatgtttgaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0099A03.1" temp_strand="+" temp_description="C06SLm0099A03.1  AC226730.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0099A03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="26079" stop="27234"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26379" g_stop="26934" g_length="556"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="556" r_length="556" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0099A03.1" gen_strand="+" ref_id="SGN-E331893" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0099A03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E331893" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26379" e_stop="26934"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCTTTGGGTCGGGGAAGGAAGGCTAAAGTATTGATTTTGGAGTGCTTGTTGTTAATGATTGGAATCTACGATAAGGAAATCGAGCTTGAGAATTGGGTGAAGGAAGAGGCGGAGCATACAGCTTTAGCATGGTTGGAGAGGATGAATTCTGAAGGAGGAAAGCCTCAAGAAATCGATGCCCGAGGTTTGCTCTTCTTTATTGGGGGTTTTGGGATTCCAGATCAATTTACAAATGCGAATATCAGAAATTTGTTTCAGGTAAGTAACCTTAAGTGGAGTTGTGATGCACTCAAACGATCAAACGCTCTCTTGGCGAAGCTTCCAGAAATAATAGAGGAAATGGTGGCAAACAAGGCAGTAGTTAAAGCTGTTCATATTGTCTATAGTGTTGGAATGCAGGAGATATTTAACCCTAGGACACTTTTAACAACATTTATAAGAGAGTGTAAGAAATCATTTGATAACATGAATGGATCACAAAGTGCACATCAAGGGAATATTGTAGCAAAAGGGAAGTACTTAGGTGATCTGAGATCGATCATCAAATGTTTGAGA</genome_strand>
        <mrna_strand>ACCTTTGGGTCGGGGAAGGAAGGCTAAAGTATTGATTTTGGAGTGCTTGTTGTTAATGATTGGAATCTACGATAAGGAAATCGAGCTTGAGAATTGGGTGAAGGAAGAGGCGGAGCATACAGCTTTAGCATGGTTGGAGAGGATGAATTCTGAAGGAGGAAAGCCTCAAGAAATCGATGCCCGAGGTTTGCTCTTCTTTATTGGGGGTTTTGGGATTCCAGATCAATTTACAAATGCGAATATCAGAAATTTGTTTCAGGTAAGTAACCTTAAGTGGAGTTGTGATGCACTCAAACGATCAAACGCTCTCTTGGCGAAGCTTCCAGAAATAATAGAGGAAATGGTGGCAAACAAGGCAGTAGTTAAAGCTGTTCATATTGTCTATAGTGTTGGAATGCAGGAGATATTTAACCCTAGGACACTTTTAACAACATTTATAAGAGAGTGTAAGAAATCATTTGATAACATGAATGGATCACAAAGTGCACATCAAGGGAATATTGTAGCAAAAGGGAAGTACTTAGGTGATCTGAGATCGATCATCAAATGTTTGAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E330272" ref_strand="+" ref_description="SGN-E330272 [cTOD-4-D23]">
      <seq>ctcgctcttctgagatcggttctggttacttgaaagaagggtcagagcggaaattatttctggaactaccacaatcttcaactgccacttctgctaataaagtggaagcccagacagtgtctgccttagatgaagctccaacaactgtaatcccatcagacaaagagcaggcactagattctgatcttgtctcttgctcatgtacttctattactggaaataaagtcatgagacctacttctagaagtccaagtttgatgagacctgtttccagaagcagactgtttgttaagaagaatgtcattgctgctctcaccaacagttccaagcaatctaatggtggaattgacaattatttgagttgtagtaccagtgagattccttgtcagacacctgaatatgttgatcagagagaagaggataaagtaccttcagaatcatgtggtgaaaatagtgtagaagttagctcatctattctggaatcaagtgttaccaaacctggtctcagctcaagcagttgtaacagaacaagatgtatagttaaaaaaggtgatgaaagatcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0099A03.1" temp_strand="+" temp_description="C06SLm0099A03.1  AC226730.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0099A03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="36836" stop="37999"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37136" g_stop="37699" g_length="564"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="564" r_length="564" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0099A03.1" gen_strand="+" ref_id="SGN-E330272" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>564</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0099A03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E330272" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37136" e_stop="37699"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCGCTCTTCTGAGATCGGTTCTGGTTACTTGAAAGAAGGGTCAGAGCGGAAATTATTTCTGGAACTACCACAATCTTCAACTGCCACTTCTGCTAATAAAGTGGAAGCCCAGACAGTGTCTGCCTTAGATGAAGCTCCAACAACTGTAATCCCATCAGACAAAGAGCAGGCACTAGATTCTGATCTTGTCTCTTGCTCATGTACTTCTATTACTGGAAATAAAGTCATGAGACCTACTTCTAGAAGTCCAAGTTTGATGAGACCTGTTTCCAGAAGCAGACTGTTTGTTAAGAAGAATGTCATTGCTGCTCTCACCAACAGTTCCAAGCAATCTAATGGTGGAATTGACAATTATTTGAGTTGTAGTACCAGTGAGATTCCTTGTCAGACACCTGAATATGTTGATCAGAGAGAAGAGGATAAAGTACCTTCAGAATCATGTGGTGAAAATAGTGTAGAAGTTAGCTCATCTATTCTGGAATCAAGTGTTACCAAACCTGGTCTCAGCTCAAGCAGTTGTAACAGAACAAGATGTATAGTTAAAAAAGGTGATGAAAGATCAT</genome_strand>
        <mrna_strand>CTCGCTCTTCTGAGATCGGTTCTGGTTACTTGAAAGAAGGGTCAGAGCGGAAATTATTTCTGGAACTACCACAATCTTCAACTGCCACTTCTGCTAATAAAGTGGAAGCCCAGACAGTGTCTGCCTTAGATGAAGCTCCAACAACTGTAATCCCATCAGACAAAGAGCAGGCACTAGATTCTGATCTTGTCTCTTGCTCATGTACTTCTATTACTGGAAATAAAGTCATGAGACCTACTTCTAGAAGTCCAAGTTTGATGAGACCTGTTTCCAGAAGCAGACTGTTTGTTAAGAAGAATGTCATTGCTGCTCTCACCAACAGTTCCAAGCAATCTAATGGTGGAATTGACAATTATTTGAGTTGTAGTACCAGTGAGATTCCTTGTCAGACACCTGAATATGTTGATCAGAGAGAAGAGGATAAAGTACCTTCAGAATCATGTGGTGAAAATAGTGTAGAAGTTAGCTCATCTATTCTGGAATCAAGTGTTACCAAACCTGGTCTCAGCTCAAGCAGTTGTAACAGAACAAGATGTATAGTTAAAAAAGGTGATGAAAGATCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E340478" ref_strand="+" ref_description="SGN-E340478 [cTOF-1-B17]">
      <seq>ctacttctagaagtccaagtttgatgagacctgtttccagaagcagactgtttgttaagaagaatgtcattgctgctctcaccaacagttccaagcaatctaatggtggaattgacaattatttgagttgtagtaccattgagattccttgtcagacacctgaatatgttgatcagagagaagaggataaagtaccttcagaatcatgtggtgaaaatagtgtagaagttagctcatctattctggaatcaagtgttaccaaacctggtctcagctcaagcagttgtaacagaacaagatgtatagttaaaaaaggtgatgaaagatcattatcaagagaaaaaggagagatatctcaaagttcaaagagtagcattggggattacagcagcaccacaagccttagcgaagaaagctatcgtagtgggtctagccgtagtggatatcggcctcatatgtccgtagatttgagatgggaagccattcgttgtgttcagaagcagcatggaaacattagtttgaagcaatttaagatgcttaaaaaacttggtggaggggacattgggactgtttatctgtctgagctaatgggcacaaactgtcagtttgctgtgaaagttatggacaatgactttctgatcagcangaggaagaatgacagagcgcagactgaaaaagaatactgcaaatactggatcatncttttctacctacactctatgctcatattaccaatgacaagtattcatgtttagtgatggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0099A03.1" temp_strand="+" temp_description="C06SLm0099A03.1  AC226730.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0099A03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="37070" stop="38433"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37370" g_stop="38133" g_length="764"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="763" r_length="763" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0099A03.1" gen_strand="+" ref_id="SGN-E340478" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>764</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0099A03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E340478" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37370" e_stop="38133"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACTTCTAGAAGTCCAAGTTTGATGAGACCTGTTTCCAGAAGCAGACTGTTTGTTAAGAAGAATGTCATTGCTGCTCTCACCAACAGTTCCAAGCAATCTAATGGTGGAATTGACAATTATTTGAGTTGTAGTACCAGTGAGATTCCTTGTCAGACACCTGAATATGTTGATCAGAGAGAAGAGGATAAAGTACCTTCAGAATCATGTGGTGAAAATAGTGTAGAAGTTAGCTCATCTATTCTGGAATCAAGTGTTACCAAACCTGGTCTCAGCTCAAGCAGTTGTAACAGAACAAGATGTATAGTTAAAAAAGGTGATGAAAGATCATTATCAAGAGAAAAAGGAGAGATATCTCAAAGTTCAAAGAGTAGCATTGGGGATTACAGCAGCACCACAAGCCTTAGCGAAGAAAGCTATCGTAGTGGGTCTAGCCGTAGTGGATATCGGCCTCATATGTCCGTAGATTTGAGATGGGAAGCCATTCGTTGTGTTCAGAAGCAGCATGGAAACATTAGTTTGAAGCAATTTAAGATGCTTAAAAAACTTGGTGGAGGGGACATTGGGACTGTTTATCTGTCTGAGCTAATGGGCACAAACTGTCAGTTTGCTGTGAAAGTTATGGACAATGACTTTCTGATCAGCAGGAGGAAG-ATGACAAGAGCGCAGACTGAAAAAGAAATACTGCAAATACTGGATCATCCTTTTCTACCTACACTCTATGCTCATATTACCAATGACAAGTATTCATGTTTAGTGATGGAA</genome_strand>
        <mrna_strand>CTACTTCTAGAAGTCCAAGTTTGATGAGACCTGTTTCCAGAAGCAGACTGTTTGTTAAGAAGAATGTCATTGCTGCTCTCACCAACAGTTCCAAGCAATCTAATGGTGGAATTGACAATTATTTGAGTTGTAGTACCATTGAGATTCCTTGTCAGACACCTGAATATGTTGATCAGAGAGAAGAGGATAAAGTACCTTCAGAATCATGTGGTGAAAATAGTGTAGAAGTTAGCTCATCTATTCTGGAATCAAGTGTTACCAAACCTGGTCTCAGCTCAAGCAGTTGTAACAGAACAAGATGTATAGTTAAAAAAGGTGATGAAAGATCATTATCAAGAGAAAAAGGAGAGATATCTCAAAGTTCAAAGAGTAGCATTGGGGATTACAGCAGCACCACAAGCCTTAGCGAAGAAAGCTATCGTAGTGGGTCTAGCCGTAGTGGATATCGGCCTCATATGTCCGTAGATTTGAGATGGGAAGCCATTCGTTGTGTTCAGAAGCAGCATGGAAACATTAGTTTGAAGCAATTTAAGATGCTTAAAAAACTTGGTGGAGGGGACATTGGGACTGTTTATCTGTCTGAGCTAATGGGCACAAACTGTCAGTTTGCTGTGAAAGTTATGGACAATGACTTTCTGATCAGCANGAGGAAGAATGAC-AGAGCGCAGACTGAAAAAG-AATACTGCAAATACTGGATCATNCTTTTCTACCTACACTCTATGCTCATATTACCAATGACAAGTATTCATGTTTAGTGATGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E312831" ref_strand="+" ref_description="SGN-E312831 [cTOA-8-M19]">
      <seq>gactgtttatctgtctgagctaatgggcacgaactgtcagtttgctgtgaaagttatggacaatgactttctgatcagcaggaggaagatgacaagagcgcagactgaaaaagaaatactgcaaatactggatcatccttttctacctacactctatgctcatattaccaatgacaagtattcatgtttagtgatggaatattgtccaggaggtgatctgcatgtgctccggcaaaagcaagccaacaagaatttctctgaacaagcagtcaggttacttttattatggttacttcttccctgaaactatttcttgtttatgtctattcctaatctagattccaagagaataggcaaataaatctgcaaataaaactatgcttttctataacaggtaatatatattttgtggtcactctctttttcatgattgctctccgatttatgaagatacgcatgtcttgaagcccttacattaagactttagagataccattcttcaataagctagactcttttgcatccacaaaatgacttttacttgtcacttgctgatggataatagcttgctttatgctatcgcttgttttattcaacaaaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0099A03.1" temp_strand="+" temp_description="C06SLm0099A03.1  AC226730.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0099A03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="37635" stop="38837"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37935" g_stop="38537" g_length="603"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="603" r_length="603" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0099A03.1" gen_strand="+" ref_id="SGN-E312831" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>603</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0099A03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E312831" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37935" e_stop="38537"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACTGTTTATCTGTCTGAGCTAATGGGCACAAACTGTCAGTTTGCTGTGAAAGTTATGGACAATGACTTTCTGATCAGCAGGAGGAAGATGACAAGAGCGCAGACTGAAAAAGAAATACTGCAAATACTGGATCATCCTTTTCTACCTACACTCTATGCTCATATTACCAATGACAAGTATTCATGTTTAGTGATGGAATATTGTCCAGGAGGTGATCTGCATGTGCTCCGGCAAAAGCAAGCCAACAAGAATTTCTCTGAACAAGCAGTCAGGTTACTTTTATTATGGTTACTTCTTCCCTGAAACTATTTCTTGTTTATGTCTATTCCTAATCTAGATTCCAAGAGAATAGGCAAATAAATCTGCAAATAAAACTATGCTTTTCTATAACAGGTAATATATATTTTGTGGTCACTCTCTTTTTCATGATTGCTCTCCGATTTATGAAGATACGCATGTCTTGAAGCCCTTACATTAAGACTTTAGAGATACCATTCTTCAATAAGCTAGACTCTTTTGCATCCACAAAATGACTTTTACTTGTCACTTGCTGATGGATAATAGCTTGCTTTATGCTATCGCTTGTTTTATTCAACAAAATT</genome_strand>
        <mrna_strand>GACTGTTTATCTGTCTGAGCTAATGGGCACGAACTGTCAGTTTGCTGTGAAAGTTATGGACAATGACTTTCTGATCAGCAGGAGGAAGATGACAAGAGCGCAGACTGAAAAAGAAATACTGCAAATACTGGATCATCCTTTTCTACCTACACTCTATGCTCATATTACCAATGACAAGTATTCATGTTTAGTGATGGAATATTGTCCAGGAGGTGATCTGCATGTGCTCCGGCAAAAGCAAGCCAACAAGAATTTCTCTGAACAAGCAGTCAGGTTACTTTTATTATGGTTACTTCTTCCCTGAAACTATTTCTTGTTTATGTCTATTCCTAATCTAGATTCCAAGAGAATAGGCAAATAAATCTGCAAATAAAACTATGCTTTTCTATAACAGGTAATATATATTTTGTGGTCACTCTCTTTTTCATGATTGCTCTCCGATTTATGAAGATACGCATGTCTTGAAGCCCTTACATTAAGACTTTAGAGATACCATTCTTCAATAAGCTAGACTCTTTTGCATCCACAAAATGACTTTTACTTGTCACTTGCTGATGGATAATAGCTTGCTTTATGCTATCGCTTGTTTTATTCAACAAAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E740515" ref_strand="+" ref_description="SGN-E740515 [LC21DA06]">
      <seq>ccggcaaaagcaagccaataagaatttctctgaacaagcagtcagattttatgtagcggaagttcttcttgctttggaataccttcacatgcttggagtcatctaccgagacttaaaaccagagaatgtcttggttcgagaagatggtcacatcatgctgtccgattttgatctgtctcttagatgtgttgttaatcccatgttggtgaaatcatgttcgcctgtgattaagcctccaaagacgtctagtccatgctcggaatctagctgcatagatcccttttgcctacatccatcctggcaagtatcctgcttcacccctagatttttatctgcaacatcaaagacacgtaagctaaaggctgacatcgctgcacaagtcacacctttgccacagctcgtagtggagccaactaatgcccgatccaactcgtttgttggcacccatgaatacctggctccagagattatcaaaggagaaggtcatggcagtgcagtagattggtggacctttggtatctttctatatgaactgttatatggaaggacaccttttaaaggaccaggaaatgaggatacattagcaaatgtggtttctcagtgtctcaagttcccttcatatcctgtggttagctctagtgcgagagatctgatcagacggttattacaaaaggaaccagagaataggttgggagctgagaaaggagctgcagagataaagcagcatcctttcttcgagggactgaactgggcgttaatacgatgtgaaacacctccagaactgcctagattctgtgaattgggaaatgtaatccctgataccaaccaacagaacaaggagattgccaagtctcacaaagagttcaaagtatagaagaggacattgcgtttgagatgttttaactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0099A03.1" temp_strand="+" temp_description="C06SLm0099A03.1  AC226730.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0099A03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="37863" stop="40561"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38163" g_stop="38207" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38208" i_stop="39399" i_length="1192">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39400" g_stop="40261" g_length="862"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="906" r_length="861" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0099A03.1" gen_strand="+" ref_id="SGN-E740515" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>907</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0099A03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E740515" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38163" e_stop="38207"/>
          <exon e_start="39400" e_stop="40261"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGGCAAAAGCAAGCCAACAAGAATTTCTCTGAACAAGCAGTCAGGTTACTTTTATTATGGTTACTTCTTCCCTGAAACTATTTCTTGTTTATGTCTATTCCTAATCTAGATTCCAAGAGAATAGGCAAATAAATCTGCAAATAAAACTATGCTTTTCTATAACAGGTAATATATATTTTGTGGTCACTCTCTTTTTCATGATTGCTCTCCGATTTATGAAGATACGCATGTCTTGAAGCCCTTACATTAAGACTTTAGAGATACCATTCTTCAATAAGCTAGACTCTTTTGCATCCACAAAATGACTTTTACTTGTCACTTGCTGATGGATAATAGCTTGCTTTATGCTATCGCTTGTTTTATTCAACAAAATTAGCATTCAATTTGACTGAATCAGGGGAGGTCAATCAAACTAATAGGGAAATCTTTTACTCTGCTAAGCTTGAGGGGTTCCCCTGTAATTTTTGGAAAGTTCAGGGGTCTGGTTATGTCAAATAAGCTTCCGATTTCCTTTAATTTCTTCTTTTTGGTCAATCCATTTTCCAACCCTCATGAAGGATTGTTATGTCTCAGTGATTAGAACTCCTTGAATCTTTGTTATATATGTTTCTCTTGATTGAACTTTGAAGAGTGTCCCATAATCTAGTGGATGCAAAATATTGAACGCAGCTAAAGTCAAAATCATTAGCAACTAGTTATATGAACAGAGATAAAATCAATTCAATGGAAACATGGGAAGTGGGTGGAAAGGGTGAATCAAAGAAAAGAAGTGGAGAAGTAAAAAATGTAGTGAAAATATGTGAACAATGAAAGTGACTTGTCACTGGACTTGCATATCTTCTCCATGGCAAATGGCATCGGCTTGATTCATCGCACATCCAGTAGTGAATTCCCACTCTGTATGGAGACTTTATCAAGTAAATTTTTGGTGAAATGAGTTGTGAATACGCAACCTGTCTTTCCAGTCATTCTCTTACTTAAGAGTATAGTATCTGAGGTGACACCTAATATGTCGAGCCTACTCTTTCAAATTTTACTGAATAACTTTCCCAAATACTCATGTTTAAGTAAATATCTTGTGCTTTATAAGTAACTTTGTTGGACAAGTCTTCCCTTATGATTTTCAGTAATCTGGTGATGGGAGTGCAGTTTGTCATTTTAATCTCATGAGACACAGTTTCTGTGGTTTGCTATGTGATCTTGACATTATATCTGTTGTTCTTATTCTTTACACAGATTTTATGTAGCGGAAGTTCTTCTTGCTTTGGAATACCTTCACATGCTTGGAGTCATCTACCGAGACTTAAAACCAGAGAATGTCTTGGTTCGAGAAGATGGTCACATCATGCTGTCCGATTTTGATCTGTCTCTTAGATGTGTTGTTAATCCCATGTTGGTGAAATCATGTTCGCCTGTGATTAAGCCTCCAAAGACGTCTAGTCCATGCTCGGAATCTAGCTGCATAGATCCCTTTTGCCTACATCCATCCTGGCAAGTATCCTGCTTCACCCCTAGATTTTTATCTGCAACATCAAAGACACGTAAGCTAAAGGCTGACATCGCTGCACAAGTCACACCTTTGCCACAGCTCGTAGTGGAGCCAACTAATGCCCGATCCAACTCGTTTGTTGGCACCCATGAATACCTGGCTCCAGAGATTATCAAAGGAGAAGGTCATGGCAGTGCAGTAGATTGGTGGACCTTTGGTATCTTTCTATATGAACTGTTATATGGAAGGACACCTTTTAAAGGACCAGGAAATGAGGATACATTAGCAAATGTGGTTTCTCAGTGTCTCAAGTTCCCTTCATATCCTGTGGTTAGCTCTAGTGCGAGAGATCTGATCAGACGGTTATTACAAAAGGAACCAGAGAATAGGTTGGGAGCTGAGAAAGGAGCTGCAGAGATAAAGCAGCATCCTTTCTTCGAGGGACTGAACTGGGCGTTAATACGATGTGAAACACCTCCAGAACTGCCTAGATTCTGTGAATTGGGAAATGTAATCCCTGATACCAACCAACAGAACAAGGAGATTGCCAAGTCTCACAAAGAGTTCAAAAGTATAGAAGAGGACATTGCGTTTGAGATGTTTTAACTT</genome_strand>
        <mrna_strand>CCGGCAAAAGCAAGCCAATAAGAATTTCTCTGAACAAGCAGTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTATGTAGCGGAAGTTCTTCTTGCTTTGGAATACCTTCACATGCTTGGAGTCATCTACCGAGACTTAAAACCAGAGAATGTCTTGGTTCGAGAAGATGGTCACATCATGCTGTCCGATTTTGATCTGTCTCTTAGATGTGTTGTTAATCCCATGTTGGTGAAATCATGTTCGCCTGTGATTAAGCCTCCAAAGACGTCTAGTCCATGCTCGGAATCTAGCTGCATAGATCCCTTTTGCCTACATCCATCCTGGCAAGTATCCTGCTTCACCCCTAGATTTTTATCTGCAACATCAAAGACACGTAAGCTAAAGGCTGACATCGCTGCACAAGTCACACCTTTGCCACAGCTCGTAGTGGAGCCAACTAATGCCCGATCCAACTCGTTTGTTGGCACCCATGAATACCTGGCTCCAGAGATTATCAAAGGAGAAGGTCATGGCAGTGCAGTAGATTGGTGGACCTTTGGTATCTTTCTATATGAACTGTTATATGGAAGGACACCTTTTAAAGGACCAGGAAATGAGGATACATTAGCAAATGTGGTTTCTCAGTGTCTCAAGTTCCCTTCATATCCTGTGGTTAGCTCTAGTGCGAGAGATCTGATCAGACGGTTATTACAAAAGGAACCAGAGAATAGGTTGGGAGCTGAGAAAGGAGCTGCAGAGATAAAGCAGCATCCTTTCTTCGAGGGACTGAACTGGGCGTTAATACGATGTGAAACACCTCCAGAACTGCCTAGATTCTGTGAATTGGGAAATGTAATCCCTGATACCAACCAACAGAACAAGGAGATTGCCAAGTCTCACAAAGAGTTC-AAAGTATAGAAGAGGACATTGCGTTTGAGATGTTTTAACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E738974" ref_strand="+" ref_description="SGN-E738974 [LC15CF08]">
      <seq>ccggcaaaagcaagccattaagaatttctctgaacaagcagtcagattttatgtagcggaagttcttcttgctttggaataccttcacatgcttggagtcatctaccgagacttaaaaccagagaatgtcttggttcgagaagatggtcacatcatgctgtccgattttgatctgtctcttagatgtgttgttaatcccatgttggtgaaatcatgttcgcctgtgattaagcctccaaagacgtctagtccatgctcggaatctagctgcatagatcccttttgcctacatccatcctggcaagtatcctgcttcacccctagatttttatctgcaacatcaaagacacgtaagctaaaggctgacatcgctgcacaagtcacacctttgccacagctcgtagtggagccaactaatgcccgatccaactcgtttgttggcacccatgaatacctggctccagagattatcaaaggagaaggtcatggcagtgcagtagattggtggacctttggtatctttctatatgaactgttatatggaaggacaccttttaaaggaccaggaaatgaggatacattagcaaatgtggtttctcagtgtctcaagttcccttcatatcctgtggttagctctagtgcgagagatctgatcagacggttattacaaaaggaaccagagaataggttgggagctgagaaaggagctgcagagataaagcagcatcctttcttcgagggactgaactgggcgttaatacgatgtgaaacacctccaaaactgcctagattctgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0099A03.1" temp_strand="+" temp_description="C06SLm0099A03.1  AC226730.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0099A03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="37863" stop="40451"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38163" g_stop="38207" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="0.956"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38208" i_stop="39399" i_length="1192">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39400" g_stop="40151" g_length="752"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="797" r_length="752" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0099A03.1" gen_strand="+" ref_id="SGN-E738974" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>797</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0099A03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E738974" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38163" e_stop="38207"/>
          <exon e_start="39400" e_stop="40151"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGGCAAAAGCAAGCCAACAAGAATTTCTCTGAACAAGCAGTCAGGTTACTTTTATTATGGTTACTTCTTCCCTGAAACTATTTCTTGTTTATGTCTATTCCTAATCTAGATTCCAAGAGAATAGGCAAATAAATCTGCAAATAAAACTATGCTTTTCTATAACAGGTAATATATATTTTGTGGTCACTCTCTTTTTCATGATTGCTCTCCGATTTATGAAGATACGCATGTCTTGAAGCCCTTACATTAAGACTTTAGAGATACCATTCTTCAATAAGCTAGACTCTTTTGCATCCACAAAATGACTTTTACTTGTCACTTGCTGATGGATAATAGCTTGCTTTATGCTATCGCTTGTTTTATTCAACAAAATTAGCATTCAATTTGACTGAATCAGGGGAGGTCAATCAAACTAATAGGGAAATCTTTTACTCTGCTAAGCTTGAGGGGTTCCCCTGTAATTTTTGGAAAGTTCAGGGGTCTGGTTATGTCAAATAAGCTTCCGATTTCCTTTAATTTCTTCTTTTTGGTCAATCCATTTTCCAACCCTCATGAAGGATTGTTATGTCTCAGTGATTAGAACTCCTTGAATCTTTGTTATATATGTTTCTCTTGATTGAACTTTGAAGAGTGTCCCATAATCTAGTGGATGCAAAATATTGAACGCAGCTAAAGTCAAAATCATTAGCAACTAGTTATATGAACAGAGATAAAATCAATTCAATGGAAACATGGGAAGTGGGTGGAAAGGGTGAATCAAAGAAAAGAAGTGGAGAAGTAAAAAATGTAGTGAAAATATGTGAACAATGAAAGTGACTTGTCACTGGACTTGCATATCTTCTCCATGGCAAATGGCATCGGCTTGATTCATCGCACATCCAGTAGTGAATTCCCACTCTGTATGGAGACTTTATCAAGTAAATTTTTGGTGAAATGAGTTGTGAATACGCAACCTGTCTTTCCAGTCATTCTCTTACTTAAGAGTATAGTATCTGAGGTGACACCTAATATGTCGAGCCTACTCTTTCAAATTTTACTGAATAACTTTCCCAAATACTCATGTTTAAGTAAATATCTTGTGCTTTATAAGTAACTTTGTTGGACAAGTCTTCCCTTATGATTTTCAGTAATCTGGTGATGGGAGTGCAGTTTGTCATTTTAATCTCATGAGACACAGTTTCTGTGGTTTGCTATGTGATCTTGACATTATATCTGTTGTTCTTATTCTTTACACAGATTTTATGTAGCGGAAGTTCTTCTTGCTTTGGAATACCTTCACATGCTTGGAGTCATCTACCGAGACTTAAAACCAGAGAATGTCTTGGTTCGAGAAGATGGTCACATCATGCTGTCCGATTTTGATCTGTCTCTTAGATGTGTTGTTAATCCCATGTTGGTGAAATCATGTTCGCCTGTGATTAAGCCTCCAAAGACGTCTAGTCCATGCTCGGAATCTAGCTGCATAGATCCCTTTTGCCTACATCCATCCTGGCAAGTATCCTGCTTCACCCCTAGATTTTTATCTGCAACATCAAAGACACGTAAGCTAAAGGCTGACATCGCTGCACAAGTCACACCTTTGCCACAGCTCGTAGTGGAGCCAACTAATGCCCGATCCAACTCGTTTGTTGGCACCCATGAATACCTGGCTCCAGAGATTATCAAAGGAGAAGGTCATGGCAGTGCAGTAGATTGGTGGACCTTTGGTATCTTTCTATATGAACTGTTATATGGAAGGACACCTTTTAAAGGACCAGGAAATGAGGATACATTAGCAAATGTGGTTTCTCAGTGTCTCAAGTTCCCTTCATATCCTGTGGTTAGCTCTAGTGCGAGAGATCTGATCAGACGGTTATTACAAAAGGAACCAGAGAATAGGTTGGGAGCTGAGAAAGGAGCTGCAGAGATAAAGCAGCATCCTTTCTTCGAGGGACTGAACTGGGCGTTAATACGATGTGAAACACCTCCAGAACTGCCTAGATTCTGTG</genome_strand>
        <mrna_strand>CCGGCAAAAGCAAGCCATTAAGAATTTCTCTGAACAAGCAGTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTATGTAGCGGAAGTTCTTCTTGCTTTGGAATACCTTCACATGCTTGGAGTCATCTACCGAGACTTAAAACCAGAGAATGTCTTGGTTCGAGAAGATGGTCACATCATGCTGTCCGATTTTGATCTGTCTCTTAGATGTGTTGTTAATCCCATGTTGGTGAAATCATGTTCGCCTGTGATTAAGCCTCCAAAGACGTCTAGTCCATGCTCGGAATCTAGCTGCATAGATCCCTTTTGCCTACATCCATCCTGGCAAGTATCCTGCTTCACCCCTAGATTTTTATCTGCAACATCAAAGACACGTAAGCTAAAGGCTGACATCGCTGCACAAGTCACACCTTTGCCACAGCTCGTAGTGGAGCCAACTAATGCCCGATCCAACTCGTTTGTTGGCACCCATGAATACCTGGCTCCAGAGATTATCAAAGGAGAAGGTCATGGCAGTGCAGTAGATTGGTGGACCTTTGGTATCTTTCTATATGAACTGTTATATGGAAGGACACCTTTTAAAGGACCAGGAAATGAGGATACATTAGCAAATGTGGTTTCTCAGTGTCTCAAGTTCCCTTCATATCCTGTGGTTAGCTCTAGTGCGAGAGATCTGATCAGACGGTTATTACAAAAGGAACCAGAGAATAGGTTGGGAGCTGAGAAAGGAGCTGCAGAGATAAAGCAGCATCCTTTCTTCGAGGGACTGAACTGGGCGTTAATACGATGTGAAACACCTCCAAAACTGCCTAGATTCTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E577230" ref_strand="+" ref_description="SGN-E577230 [33905]">
      <seq>ttggattctacactatgctatatatactacttacatggatcacagatttgtgttaaaaaagagaaaagaaaaacaaacctatccattctcaggtctagtataagctaaaacatctcaaacgcaatgtcctctcctatacttttgaactctttttgagacttggcaatctccttggttctgttggttggtatcagggattacatttcccaagtcacagaatctaggcagttctggaggtgtttcacatcgtatcagcgcccagttcagtccctcgaagaacggatgctgctttatctctgcagctcctttctcagctcccaacctattctctggttccttttgcaataaccgtctgatcaaatctctcgcactagagctaaccacaggatatgaagggaacttgagacactgagaaaccacatttgctaatgtatcctcatttcctggtcctttgaaaggtgtccttccatataacagttcatatagaaagataccaaaggtccaccaatctactgcactgccatgaccttctcctttgataatctctggagccaggtactcatgggtgccaacaaacgagttggatcgggcatcagttggctccaccacgagctgtggcaaaggtgtgacttgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0099A03.1" temp_strand="-" temp_description="C06SLm0099A03.1  AC226730.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0099A03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="40662" stop="39429"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40363" g_stop="39729" g_length="635"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="635" r_length="635" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0099A03.1" gen_strand="-" ref_id="SGN-E577230" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>635</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0099A03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E577230" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40363" e_stop="39729"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGATTCTACACTATGCTATATATACTACTTACATGGATCACAGATATTTTGCTAAAAAGGAGTAAAGAAAAACAAACCTATCCATTCTCAGGTCTAGTAAAAGTTAAAACATCTCAAACGCAATGTCCTCTTCTATACTTTTGAACTCTTTGTGAGACTTGGCAATCTCCTT-GTTCTGTTGGTTGGTATCAGGGATTACATTTCCCAATTCACAGAATCTAGGCAGTTCTGGAGGTGTTTCACATCGTATTAACGCCCAGTTCAGTCCCTCGAAGAAAGGATGCTGCTTTATCTCTGCAGCTCCTTTCTCAGCTCCCAACCTATTCTCTGGTTCCTTTTGTAATAACCGTCTGATCAGATCTCTCGCACTAGAGCTAACCACAGGATATGAAGGGAACTTGAGACACTGAGAAACCACATTTGCTAATGTATCCTCATTTCCTGGTCCTTTAAAAGGTGTCCTTCCATATAACAGTTCATATAGAAAGATACCAAAGGTCCACCAATCTACTGCACTGCCATGACCTTCTCCTTTGATAATCTCTGGAGCCAGGTATTCATGGGTGCCAACAAACGAGTTGGATCGGGCATTAGTTGGCTCCACTACGAGCTGTGGCAAAGGTGTGACTTGTG</genome_strand>
        <mrna_strand>TTGGATTCTACACTATGCTATATATACTACTTACATGGATCACAGAT-TTGTGTTAAAAAAGAGAAAAGAAAAACAAACCTATCCATTCTCAGGTCTAGTATAAGCTAAAACATCTCAAACGCAATGTCCTCTCCTATACTTTTGAACTCTTTTTGAGACTTGGCAATCTCCTTGGTTCTGTTGGTTGGTATCAGGGATTACATTTCCCAAGTCACAGAATCTAGGCAGTTCTGGAGGTGTTTCACATCGTATCAGCGCCCAGTTCAGTCCCTCGAAGAACGGATGCTGCTTTATCTCTGCAGCTCCTTTCTCAGCTCCCAACCTATTCTCTGGTTCCTTTTGCAATAACCGTCTGATCAAATCTCTCGCACTAGAGCTAACCACAGGATATGAAGGGAACTTGAGACACTGAGAAACCACATTTGCTAATGTATCCTCATTTCCTGGTCCTTTGAAAGGTGTCCTTCCATATAACAGTTCATATAGAAAGATACCAAAGGTCCACCAATCTACTGCACTGCCATGACCTTCTCCTTTGATAATCTCTGGAGCCAGGTACTCATGGGTGCCAACAAACGAGTTGGATCGGGCATCAGTTGGCTCCACCACGAGCTGTGGCAAAGGTGTGACTTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E721548" ref_strand="+" ref_description="SGN-E721548 [FC14BA06]">
      <seq>atcgacgactccctgctcatcgtcttcagctttctctccgtcgcttgccaagatgtcagaagaagcacctttctatcccagagaaaagcttgttgagaagcaaaagttttaccaaagcgtccacaagcacacatacttgaaaggtcgttttgacaaggtcacctcagtggccattccagctgctttggctgcttctgctttgtttatgattgggagagggatctacaacatgtctcatggcatagggaagaaggaataaatagcggctactgctcgactattgttcctatggtggctgaatttgaaacgacctgtttgttcttttgttgattttcaattatcagtagctaatactagtcacttggatgctgatattaaaacatgccgatttatggcatatgctatcagtactccgcagcataataacacattatctcctctgtttaggggttctgcatatttgtattaaacggtgtttgtgtggaaaataagcatgtcattttctggctctccttaaccctgtattatgtgtttccaatcataactgtttaaatatcctgctgagtttttgcctgtataaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0099A03.1" temp_strand="-" temp_description="C06SLm0099A03.1  AC226730.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0099A03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="43404" stop="40280"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43104" g_stop="43054" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43053" i_stop="41189" i_length="1865">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41188" g_stop="41029" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="211" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41028" i_stop="40947" i_length="82">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40946" g_stop="40577" g_length="370"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="582" r_length="371" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0099A03.1" gen_strand="-" ref_id="SGN-E721548" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>581</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0099A03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E721548" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43104" e_stop="43054"/>
          <exon e_start="41188" e_stop="41029"/>
          <exon e_start="40946" e_stop="40577"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCGACGACTCCCTGCTCATCGTCTTCAGCTTTCTCTCCGTCGCTTGCCAAGTGAGTTCATCTGCAAACCCTAGGTTTTCTGTTTTCTTAATCTCATTAGGTTTTATTCTGATCCGTTGATTCATAATCTGTTCCCTTTTTGTTTGTTTGTTGTGATTTTTTTAATCTTTAGTCTTGATTTTGCAGTTATTGATATATCATTTGTTGTTGAGTAGACGGGTTGGAATTTGTATTACTTTTTTGGATCCGTTTTTCAGTTTTGTATGTGTGTTTATAAGTAGATCTGTTTTTGTGATGGATTCATTTCATTGCTATACATGTTCTTTCGCTGTTGGTAAACTATGATAGTGTAGTTTGTTTTTATTTTTACTTGGATTGGATTCATCTTTGCGTAGTTTTGAAGCTCGCGTAGTTCATTAGGTCAGCTCCTAAAGGAGAGACTGTATTTGACTAGATGAAGATAATAATGACATGGGTTGACTCAGTTAGCGAGATGGCTCAATTCTGTAGTTCGAGTCATATTGGGGGTAATTAAGAACCGCAGTCGATCCATAACAGTGCGTTAGAAATATGATTATTAGGTTTCTCTTTTAGATTTTGTGGTTTCTCGTGTTATTATCTATAGGAGCATCGAGCTGTAAGACTAGCTCAATTCATTTTATTAACATGAAGATGAATCATAAGGTTGCTCAGGTTAATTATTCTTAGGGAATAATTGAACAATAATACAGTCTGGTGAAAGGGTTATGTCTTCGCTGTTAAGTCAAGCCATGCTTATTGCTCATTTGGTGCAAAAATCACTTAAATCACGGAGCTAATTGGCTAATTCATTAAGACATGGTTGTGGTTGGACTTCACATATCTGTAACCATATAACCTTTGATGTTAATATGGGTTACATTACCATCCTGTTTTTTTACCCCTGATTTAACTATGCCACCAACATATGTGATCAGAGCATTTGTGTCTTTTCTTCTTAATTCTCTTAATCAGGGGAAGTGATATTATACTTGTTCAATGAAAATTTGAAGGTGCAAGTCATGGCTGTCATATGATCAGTGTGTTGCTGTTTCTTTTTGAATAGTTAAATCTTAGAGTCTTGTTTTCCTTTACACTAGATCCATTGAACTTGATTCTACTAAAAACCATCTCTCATCTCAGCCTTACAGCTCGACACAGCATCTATAATCTCTTTTCATTCTTCTTCAAGAGTTACAGTCACCATTAGAACATACCAATATTCATTTGAGATAACAGAGAAAACTCCCACTTAAAATGGAGATCTCACGGGATGTTCCATCACCACCAGTTTATTTTGGTTCTTGGGGCAGATTTTTTTTTTTTTTTTGGGGGGGGGGGGGTGGAGTGTGCTGTCTGTTTTGGTTATGCCATCTTATTAGTTTTCATGCTGCTTTACAGAGATGAATATATCACCATCCCTTATGTTTTAAGGAAAAACTCTCATTTACTTGCTATAGATAGTCTTCAATTAAGTCTGTAACAACCACAGCACTCTGGCTCTGCTTCTTTGTTGTATTGGAGACCATAATTTGGTGGATACCTTTATGTACTTTATTCAAATGACTGGATGTTCTACCTGTGTGCCTTCAGTCATATGCATTTCATGCACTTTCAAATATTCTTTTATGCTGATGGACTCCTCTTTTTATATACCTGGTCCTGGACTACAAATTCAATTGCACCTCTTTTCTAGAATAAATCATTTTATGCAAAGCTTGTTTTAGTTATTTAAGCATCCATGAAAGATTCACTTCTCTCGTAGTGTGCCACAAATATGTTAGAAAAAGAAGGGAATGTTGCGGATATTAACCATCCTAACGTGGTGCAGGTTAAACTGATTGGTTATATTCATTTTATTACGAGATTGTAAATTTACAAGTTATTGAATAACACAGGATGTCAGAAGAAGCACCTTTCTATCCCAGAGAAAAGCTTGTTGAGAAGCAAAAGTTTTACCAAAGCGTCCACAAGCACACATACTTGAAAGGTCGTTTTGACAAGGTCACCTCAGTGGCCATTCCAGCTGCTTTGGCTGCTTCTGCTTTGTTTATGATTGTGAGTTTCTTCGAATTTTTTCTAGATTGCTTTATCTGATGTCCCGAATCAACTCTAATGGTATTTTTGGATTATATTTCAGGGGAGAGGGATCTACAACATGTCTCATGGCATAGGGAAGAAGGAATAAATAGCGGCTACTGCTCGACTATTGTTCCTATGGTGGCTGAATTTGAAACGACCTGTTTGTTCTTTTGTTGATTTTCAATTATCAGTAGCTAATACTAGTCACTTGGATGCTGATATTAAAACATGCCGATTTATGGCATATGCTATCAGTACTCCGCAGCATAATAACACATTATCTCCTCTGTTTAGGGGTTCTGCATATTTGTATTAAACGGTGTTTGTGTGG-AAATAAGCATGTCATTTTCTGGCTCTCCTTAACCCTGTATTATGTGTTTCCAATCATAACTGTTTAAATATCCTGCTGAGTTTTTGCCTGTATATTA</genome_strand>
        <mrna_strand>ATCGACGACTCCCTGCTCATCGTCTTCAGCTTTCTCTCCGTCGCTTGCCAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTCAGAAGAAGCACCTTTCTATCCCAGAGAAAAGCTTGTTGAGAAGCAAAAGTTTTACCAAAGCGTCCACAAGCACACATACTTGAAAGGTCGTTTTGACAAGGTCACCTCAGTGGCCATTCCAGCTGCTTTGGCTGCTTCTGCTTTGTTTATGATT..................................................................................GGGAGAGGGATCTACAACATGTCTCATGGCATAGGGAAGAAGGAATAAATAGCGGCTACTGCTCGACTATTGTTCCTATGGTGGCTGAATTTGAAACGACCTGTTTGTTCTTTTGTTGATTTTCAATTATCAGTAGCTAATACTAGTCACTTGGATGCTGATATTAAAACATGCCGATTTATGGCATATGCTATCAGTACTCCGCAGCATAATAACACATTATCTCCTCTGTTTAGGGGTTCTGCATATTTGTATTAAACGGTGTTTGTGTGGAAAATAAGCATGTCATTTTCTGGCTCTCCTTAACCCTGTATTATGTGTTTCCAATCATAACTGTTTAAATATCCTGCTGAGTTTTTGCCTGTATAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E734737" ref_strand="+" ref_description="SGN-E734737 [LB13BH02]">
      <seq>attgattttcttcatcgacgactccctgctcatcgtcttcagctttctctccgtcgcttgccaagatgtcagaagaagcacctttctatcccagagaaaagcttgttgagaagcaaaagttttaccaaagcgtccacaagcacacatacttgaaaggtcgttttgacaaggtcacctcagtggccattccagctgctttggctgcttctgctttgtttatgattgggagagggatctacaacatgtctcatggcatagggaagaaggaataaatagcggctactgctcgactattgttcctatggtggctgaatttgaaacgacctgtttgttcttttgttgattttcaattatcagtagctaatactagtcacttggatgctgatattaaaacatgccgatttatggcatatgctatcagtactccgcagcataataacacattatctcctctgtttaggggttctgcatatttgtattaaacggtgtttgtgtggaaataagcatgtcattttctggctctccttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0099A03.1" temp_strand="-" temp_description="C06SLm0099A03.1  AC226730.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0099A03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="43417" stop="40342"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43117" g_stop="43054" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43053" i_stop="41189" i_length="1865">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41188" g_stop="41029" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="224" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41028" i_stop="40947" i_length="82">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40946" g_stop="40633" g_length="314"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="538" r_length="314" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0099A03.1" gen_strand="-" ref_id="SGN-E734737" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>538</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0099A03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E734737" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43117" e_stop="43054"/>
          <exon e_start="41188" e_stop="41029"/>
          <exon e_start="40946" e_stop="40633"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGATTTTCTTCATCGACGACTCCCTGCTCATCGTCTTCAGCTTTCTCTCCGTCGCTTGCCAAGTGAGTTCATCTGCAAACCCTAGGTTTTCTGTTTTCTTAATCTCATTAGGTTTTATTCTGATCCGTTGATTCATAATCTGTTCCCTTTTTGTTTGTTTGTTGTGATTTTTTTAATCTTTAGTCTTGATTTTGCAGTTATTGATATATCATTTGTTGTTGAGTAGACGGGTTGGAATTTGTATTACTTTTTTGGATCCGTTTTTCAGTTTTGTATGTGTGTTTATAAGTAGATCTGTTTTTGTGATGGATTCATTTCATTGCTATACATGTTCTTTCGCTGTTGGTAAACTATGATAGTGTAGTTTGTTTTTATTTTTACTTGGATTGGATTCATCTTTGCGTAGTTTTGAAGCTCGCGTAGTTCATTAGGTCAGCTCCTAAAGGAGAGACTGTATTTGACTAGATGAAGATAATAATGACATGGGTTGACTCAGTTAGCGAGATGGCTCAATTCTGTAGTTCGAGTCATATTGGGGGTAATTAAGAACCGCAGTCGATCCATAACAGTGCGTTAGAAATATGATTATTAGGTTTCTCTTTTAGATTTTGTGGTTTCTCGTGTTATTATCTATAGGAGCATCGAGCTGTAAGACTAGCTCAATTCATTTTATTAACATGAAGATGAATCATAAGGTTGCTCAGGTTAATTATTCTTAGGGAATAATTGAACAATAATACAGTCTGGTGAAAGGGTTATGTCTTCGCTGTTAAGTCAAGCCATGCTTATTGCTCATTTGGTGCAAAAATCACTTAAATCACGGAGCTAATTGGCTAATTCATTAAGACATGGTTGTGGTTGGACTTCACATATCTGTAACCATATAACCTTTGATGTTAATATGGGTTACATTACCATCCTGTTTTTTTACCCCTGATTTAACTATGCCACCAACATATGTGATCAGAGCATTTGTGTCTTTTCTTCTTAATTCTCTTAATCAGGGGAAGTGATATTATACTTGTTCAATGAAAATTTGAAGGTGCAAGTCATGGCTGTCATATGATCAGTGTGTTGCTGTTTCTTTTTGAATAGTTAAATCTTAGAGTCTTGTTTTCCTTTACACTAGATCCATTGAACTTGATTCTACTAAAAACCATCTCTCATCTCAGCCTTACAGCTCGACACAGCATCTATAATCTCTTTTCATTCTTCTTCAAGAGTTACAGTCACCATTAGAACATACCAATATTCATTTGAGATAACAGAGAAAACTCCCACTTAAAATGGAGATCTCACGGGATGTTCCATCACCACCAGTTTATTTTGGTTCTTGGGGCAGATTTTTTTTTTTTTTTTGGGGGGGGGGGGGTGGAGTGTGCTGTCTGTTTTGGTTATGCCATCTTATTAGTTTTCATGCTGCTTTACAGAGATGAATATATCACCATCCCTTATGTTTTAAGGAAAAACTCTCATTTACTTGCTATAGATAGTCTTCAATTAAGTCTGTAACAACCACAGCACTCTGGCTCTGCTTCTTTGTTGTATTGGAGACCATAATTTGGTGGATACCTTTATGTACTTTATTCAAATGACTGGATGTTCTACCTGTGTGCCTTCAGTCATATGCATTTCATGCACTTTCAAATATTCTTTTATGCTGATGGACTCCTCTTTTTATATACCTGGTCCTGGACTACAAATTCAATTGCACCTCTTTTCTAGAATAAATCATTTTATGCAAAGCTTGTTTTAGTTATTTAAGCATCCATGAAAGATTCACTTCTCTCGTAGTGTGCCACAAATATGTTAGAAAAAGAAGGGAATGTTGCGGATATTAACCATCCTAACGTGGTGCAGGTTAAACTGATTGGTTATATTCATTTTATTACGAGATTGTAAATTTACAAGTTATTGAATAACACAGGATGTCAGAAGAAGCACCTTTCTATCCCAGAGAAAAGCTTGTTGAGAAGCAAAAGTTTTACCAAAGCGTCCACAAGCACACATACTTGAAAGGTCGTTTTGACAAGGTCACCTCAGTGGCCATTCCAGCTGCTTTGGCTGCTTCTGCTTTGTTTATGATTGTGAGTTTCTTCGAATTTTTTCTAGATTGCTTTATCTGATGTCCCGAATCAACTCTAATGGTATTTTTGGATTATATTTCAGGGGAGAGGGATCTACAACATGTCTCATGGCATAGGGAAGAAGGAATAAATAGCGGCTACTGCTCGACTATTGTTCCTATGGTGGCTGAATTTGAAACGACCTGTTTGTTCTTTTGTTGATTTTCAATTATCAGTAGCTAATACTAGTCACTTGGATGCTGATATTAAAACATGCCGATTTATGGCATATGCTATCAGTACTCCGCAGCATAATAACACATTATCTCCTCTGTTTAGGGGTTCTGCATATTTGTATTAAACGGTGTTTGTGTGGAAATAAGCATGTCATTTTCTGGCTCTCCTTAACCCTGTATT</genome_strand>
        <mrna_strand>ATTGATTTTCTTCATCGACGACTCCCTGCTCATCGTCTTCAGCTTTCTCTCCGTCGCTTGCCAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTCAGAAGAAGCACCTTTCTATCCCAGAGAAAAGCTTGTTGAGAAGCAAAAGTTTTACCAAAGCGTCCACAAGCACACATACTTGAAAGGTCGTTTTGACAAGGTCACCTCAGTGGCCATTCCAGCTGCTTTGGCTGCTTCTGCTTTGTTTATGATT..................................................................................GGGAGAGGGATCTACAACATGTCTCATGGCATAGGGAAGAAGGAATAAATAGCGGCTACTGCTCGACTATTGTTCCTATGGTGGCTGAATTTGAAACGACCTGTTTGTTCTTTTGTTGATTTTCAATTATCAGTAGCTAATACTAGTCACTTGGATGCTGATATTAAAACATGCCGATTTATGGCATATGCTATCAGTACTCCGCAGCATAATAACACATTATCTCCTCTGTTTAGGGGTTCTGCATATTTGTATTAAACGGTGTTTGTGTGGAAATAAGCATGTCATTTTCTGGCTCTCCTTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E717138" ref_strand="+" ref_description="SGN-E717138 [FB19AH12]">
      <seq>ccctttaaagacacctttctatcccagagaaaaacttgttgaccacccggggggtttaccaaacccgtccaccagcacacatacttgaaaagacgttttgacaaggtcacctcagtggccattccagctgctttggctgcttctgctttgtttatgattgggagagggatctacaacatgtctcatggcatagggaagaaggaataaatagcggctactgctcgactattgttcctatggtggctgaatttgaaacgacctgtttgctcttttgttgattttcaattatcagtagctaatactagtcacttggatgctgatattaaaacatgccgatttatggcatatgctatcagtactccgcagcataataaccacattatctcctctgtttaggggttctgcatatttgtattaaacggtgtttgtgtggaaataagcatgtcattttctggctctccttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0099A03.1" temp_strand="-" temp_description="C06SLm0099A03.1  AC226730.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0099A03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="41484" stop="40342"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41185" g_stop="41029" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="159" r_length="159" r_score="0.841"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41028" i_stop="40947" i_length="82">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40946" g_stop="40634" g_length="313"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="473" r_length="314" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0099A03.1" gen_strand="-" ref_id="SGN-E717138" ref_strand="+">
        <total_alignment_score>0.926</total_alignment_score>
        <cumulative_length_of_scored_exons>470</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0099A03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E717138" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41185" e_stop="41029"/>
          <exon e_start="40946" e_stop="40634"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCAGAAGAAGCACCTTTCTATCCCAGAGAAAAGCTTGTTGA-GAAGCAAAAGTTTTACCAAA-GCGTCCACAAGCACACATACTTGAAAGGTCGTTTTGACAAGGTCACCTCAGTGGCCATTCCAGCTGCTTTGGCTGCTTCTGCTTTGTTTATGATTGTGAGTTTCTTCGAATTTTTTCTAGATTGCTTTATCTGATGTCCCGAATCAACTCTAATGGTATTTTTGGATTATATTTCAGGGGAGAGGGATCTACAACATGTCTCATGGCATAGGGAAGAAGGAATAAATAGCGGCTACTGCTCGACTATTGTTCCTATGGTGGCTGAATTTGAAACGACCTGTTTGTTCTTTTGTTGATTTTCAATTATCAGTAGCTAATACTAGTCACTTGGATGCTGATATTAAAACATGCCGATTTATGGCATATGCTATCAGTACTCCGCAGCATAATAA-CACATTATCTCCTCTGTTTAGGGGTTCTGCATATTTGTATTAAACGGTGTTTGTGTGGAAATAAGCATGTCATTTTCTGGCTCTCCTTAACCCTGTAT</genome_strand>
        <mrna_strand>CCCTTTAAAGACACCTTTCTATCCCAGAGAAAAACTTGTTGACCACCCGGGGGGTTTACCAAACCCGTCCACCAGCACACATACTTGAAAAGACGTTTTGACAAGGTCACCTCAGTGGCCATTCCAGCTGCTTTGGCTGCTTCTGCTTTGTTTATGATT..................................................................................GGGAGAGGGATCTACAACATGTCTCATGGCATAGGGAAGAAGGAATAAATAGCGGCTACTGCTCGACTATTGTTCCTATGGTGGCTGAATTTGAAACGACCTGTTTGCTCTTTTGTTGATTTTCAATTATCAGTAGCTAATACTAGTCACTTGGATGCTGATATTAAAACATGCCGATTTATGGCATATGCTATCAGTACTCCGCAGCATAATAACCACATTATCTCCTCTGTTTAGGGGTTCTGCATATTTGTATTAAACGGTGTTTGTGTGGAAATAAGCATGTCATTTTCTGGCTCTCCTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E717131" ref_strand="+" ref_description="SGN-E717131 [FB19AD08]">
      <seq>ccctaagaagcacctttctatcccagagaaaagcttgttgagaagcaaaagttttaccaaagcgtccacaagcacacatacttgaaaggtcgttttgacaaggtcacctcagtggccattccagctgctttggctgcttctgctttgtttatgattgggagagggatctacaacatgtctcatggcatagggaagaaggaataaatagcggctactgctcgactattgttcctatggtggctgaatttgaaacgacctgtttgttcttttgttgattttcaattatcagtagctaatactagtcacttggatgctgatattaaaacatgccgatttatggcatatgctatcagtactccgcagcataataacacattatctcctctgtttaggggttctgcatatttgtattaaacggtgtttgtgtggaaataagcatgtcattttctggctctccttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0099A03.1" temp_strand="-" temp_description="C06SLm0099A03.1  AC226730.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0099A03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="41480" stop="40342"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41184" g_stop="41029" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="156" r_length="156" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41028" i_stop="40947" i_length="82">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40946" g_stop="40634" g_length="313"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="469" r_length="313" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0099A03.1" gen_strand="-" ref_id="SGN-E717131" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>469</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0099A03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E717131" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41184" e_stop="41029"/>
          <exon e_start="40946" e_stop="40634"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGAAGAAGCACCTTTCTATCCCAGAGAAAAGCTTGTTGAGAAGCAAAAGTTTTACCAAAGCGTCCACAAGCACACATACTTGAAAGGTCGTTTTGACAAGGTCACCTCAGTGGCCATTCCAGCTGCTTTGGCTGCTTCTGCTTTGTTTATGATTGTGAGTTTCTTCGAATTTTTTCTAGATTGCTTTATCTGATGTCCCGAATCAACTCTAATGGTATTTTTGGATTATATTTCAGGGGAGAGGGATCTACAACATGTCTCATGGCATAGGGAAGAAGGAATAAATAGCGGCTACTGCTCGACTATTGTTCCTATGGTGGCTGAATTTGAAACGACCTGTTTGTTCTTTTGTTGATTTTCAATTATCAGTAGCTAATACTAGTCACTTGGATGCTGATATTAAAACATGCCGATTTATGGCATATGCTATCAGTACTCCGCAGCATAATAACACATTATCTCCTCTGTTTAGGGGTTCTGCATATTTGTATTAAACGGTGTTTGTGTGGAAATAAGCATGTCATTTTCTGGCTCTCCTTAACCCTGTAT</genome_strand>
        <mrna_strand>CCCTAAGAAGCACCTTTCTATCCCAGAGAAAAGCTTGTTGAGAAGCAAAAGTTTTACCAAAGCGTCCACAAGCACACATACTTGAAAGGTCGTTTTGACAAGGTCACCTCAGTGGCCATTCCAGCTGCTTTGGCTGCTTCTGCTTTGTTTATGATT..................................................................................GGGAGAGGGATCTACAACATGTCTCATGGCATAGGGAAGAAGGAATAAATAGCGGCTACTGCTCGACTATTGTTCCTATGGTGGCTGAATTTGAAACGACCTGTTTGTTCTTTTGTTGATTTTCAATTATCAGTAGCTAATACTAGTCACTTGGATGCTGATATTAAAACATGCCGATTTATGGCATATGCTATCAGTACTCCGCAGCATAATAACACATTATCTCCTCTGTTTAGGGGTTCTGCATATTTGTATTAAACGGTGTTTGTGTGGAAATAAGCATGTCATTTTCTGGCTCTCCTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E714906" ref_strand="+" ref_description="SGN-E714906 [FB12DB07]">
      <seq>cgagaagaagcacctttctatcccagagaaaagcttgttgagaagcaaaagttttaccaaagcgtccacaagcacacatacttgaaaggtcgttttgacaaggtcacctcagtggccattccagctgctttggctgcttctgctttgtttatgattgggagagggatctacaacatgtctcatggcatagggaagaaggaataaatagcggctactgctcgactattgttcctatggtggctgaatttgaaacgacctgtttgttcttttgttgattttcaattatcagtagctaatactagtcacttggatgctgatattaaaacatgccgatttatggcatatgctatcagtactccgcagcataataacacattatctcctctgtttaggggttctgcatatttgtattaaacggtgtttgtgtggaaataagcatgtcattttctggctctccttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0099A03.1" temp_strand="-" temp_description="C06SLm0099A03.1  AC226730.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0099A03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="41482" stop="40342"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41184" g_stop="41029" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="156" r_length="156" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41028" i_stop="40947" i_length="82">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40946" g_stop="40634" g_length="313"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="469" r_length="313" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0099A03.1" gen_strand="-" ref_id="SGN-E714906" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>469</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0099A03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E714906" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41184" e_stop="41029"/>
          <exon e_start="40946" e_stop="40634"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGAAGAAGCACCTTTCTATCCCAGAGAAAAGCTTGTTGAGAAGCAAAAGTTTTACCAAAGCGTCCACAAGCACACATACTTGAAAGGTCGTTTTGACAAGGTCACCTCAGTGGCCATTCCAGCTGCTTTGGCTGCTTCTGCTTTGTTTATGATTGTGAGTTTCTTCGAATTTTTTCTAGATTGCTTTATCTGATGTCCCGAATCAACTCTAATGGTATTTTTGGATTATATTTCAGGGGAGAGGGATCTACAACATGTCTCATGGCATAGGGAAGAAGGAATAAATAGCGGCTACTGCTCGACTATTGTTCCTATGGTGGCTGAATTTGAAACGACCTGTTTGTTCTTTTGTTGATTTTCAATTATCAGTAGCTAATACTAGTCACTTGGATGCTGATATTAAAACATGCCGATTTATGGCATATGCTATCAGTACTCCGCAGCATAATAACACATTATCTCCTCTGTTTAGGGGTTCTGCATATTTGTATTAAACGGTGTTTGTGTGGAAATAAGCATGTCATTTTCTGGCTCTCCTTAACCCTGTAT</genome_strand>
        <mrna_strand>CGAGAAGAAGCACCTTTCTATCCCAGAGAAAAGCTTGTTGAGAAGCAAAAGTTTTACCAAAGCGTCCACAAGCACACATACTTGAAAGGTCGTTTTGACAAGGTCACCTCAGTGGCCATTCCAGCTGCTTTGGCTGCTTCTGCTTTGTTTATGATT..................................................................................GGGAGAGGGATCTACAACATGTCTCATGGCATAGGGAAGAAGGAATAAATAGCGGCTACTGCTCGACTATTGTTCCTATGGTGGCTGAATTTGAAACGACCTGTTTGTTCTTTTGTTGATTTTCAATTATCAGTAGCTAATACTAGTCACTTGGATGCTGATATTAAAACATGCCGATTTATGGCATATGCTATCAGTACTCCGCAGCATAATAACACATTATCTCCTCTGTTTAGGGGTTCTGCATATTTGTATTAAACGGTGTTTGTGTGGAAATAAGCATGTCATTTTCTGGCTCTCCTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E717132" ref_strand="+" ref_description="SGN-E717132 [FB19AD11]">
      <seq>cagaagaagcacctttctatcccagagaaaagcttgttgagaagcaaaagttttaccaaagcgtccacaagcacacatacttgaaaggtcgttttgacaaggtcacctcagtggccattccagctgctttggctgcttctgctttgtttatgattgggagagggatctacaacatgtctcatggcatagggaagaaggaataaatagcggctactgctcgactattgttcctatggtggctgaatttgaaacgacctgtttgttcttttgttgattttcaattatcagtagctaatactagtcacttggatgctgatattaaaacatgccgatttatggcatatgctatcagtactccgcagcataataacacattatctcctctgtttaggggttctgcatatttgtattaaacggtgtttgtgtggaaataagcatgtcattttctggctctccttaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0099A03.1" temp_strand="-" temp_description="C06SLm0099A03.1  AC226730.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0099A03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="41483" stop="40342"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41183" g_stop="41029" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="155" r_length="155" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41028" i_stop="40947" i_length="82">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40946" g_stop="40635" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="467" r_length="312" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0099A03.1" gen_strand="-" ref_id="SGN-E717132" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>467</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0099A03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E717132" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41183" e_stop="41029"/>
          <exon e_start="40946" e_stop="40635"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAAGAAGCACCTTTCTATCCCAGAGAAAAGCTTGTTGAGAAGCAAAAGTTTTACCAAAGCGTCCACAAGCACACATACTTGAAAGGTCGTTTTGACAAGGTCACCTCAGTGGCCATTCCAGCTGCTTTGGCTGCTTCTGCTTTGTTTATGATTGTGAGTTTCTTCGAATTTTTTCTAGATTGCTTTATCTGATGTCCCGAATCAACTCTAATGGTATTTTTGGATTATATTTCAGGGGAGAGGGATCTACAACATGTCTCATGGCATAGGGAAGAAGGAATAAATAGCGGCTACTGCTCGACTATTGTTCCTATGGTGGCTGAATTTGAAACGACCTGTTTGTTCTTTTGTTGATTTTCAATTATCAGTAGCTAATACTAGTCACTTGGATGCTGATATTAAAACATGCCGATTTATGGCATATGCTATCAGTACTCCGCAGCATAATAACACATTATCTCCTCTGTTTAGGGGTTCTGCATATTTGTATTAAACGGTGTTTGTGTGGAAATAAGCATGTCATTTTCTGGCTCTCCTTAACCCTGTA</genome_strand>
        <mrna_strand>CAGAAGAAGCACCTTTCTATCCCAGAGAAAAGCTTGTTGAGAAGCAAAAGTTTTACCAAAGCGTCCACAAGCACACATACTTGAAAGGTCGTTTTGACAAGGTCACCTCAGTGGCCATTCCAGCTGCTTTGGCTGCTTCTGCTTTGTTTATGATT..................................................................................GGGAGAGGGATCTACAACATGTCTCATGGCATAGGGAAGAAGGAATAAATAGCGGCTACTGCTCGACTATTGTTCCTATGGTGGCTGAATTTGAAACGACCTGTTTGTTCTTTTGTTGATTTTCAATTATCAGTAGCTAATACTAGTCACTTGGATGCTGATATTAAAACATGCCGATTTATGGCATATGCTATCAGTACTCCGCAGCATAATAACACATTATCTCCTCTGTTTAGGGGTTCTGCATATTTGTATTAAACGGTGTTTGTGTGGAAATAAGCATGTCATTTTCTGGCTCTCCTTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E722533" ref_strand="+" ref_description="SGN-E722533 [FC17CC03]">
      <seq>aatcggccgaattgagaaattctaagtgtttatatttgcaaacttttaaaatgttggctaaaagttaaataattggaaattcaattggatcggaaatttctaggttttagcttcgattcaactaattgattttcttcatcgacgactccctgctcatcgtcttcagctttctctccgtcgcttgccaagatgtcagaagaagcacctttctatcccagagaaaagcttgttgagaagcaaaagttttaccaaagcgtccacaagcacacatacttgaaaggtcgttttgacaaggtcacctcagtggccattccagctgctttggctgcttctgctttgtttatgattgggagagggatctacaacatgtctcatggcatagggaagaaggaataaatagcggctactgctcgactattgttcctatggtggctgaatttgaaacgacctgtttgttcttttgttgattttcaattatcagtagctaatactagtcacttggatgctgatattaaaacatgccgatttatggcatatgctatcagtactccgcagcataataacacattatctcctctgtttaggggttctgcatatttgtattaaacggtgtttgtgtggaaataagcatgtcattttctggctctccttaaccctgtnnaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0099A03.1" temp_strand="-" temp_description="C06SLm0099A03.1  AC226730.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0099A03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="43530" stop="40336"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43225" g_stop="43054" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="188" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43053" i_stop="41189" i_length="1865">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41188" g_stop="41029" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="348" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41028" i_stop="40947" i_length="82">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40946" g_stop="40636" g_length="311"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="659" r_length="311" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="662" polyA_stop="687"/>
      <MATCH_line gen_id="C06SLm0099A03.1" gen_strand="-" ref_id="SGN-E722533" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>643</cumulative_length_of_scored_exons>
        <coverage percentage="0.936" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0099A03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E722533" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43225" e_stop="43054"/>
          <exon e_start="41188" e_stop="41029"/>
          <exon e_start="40946" e_stop="40636"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTCTAAGTGTTTATATTTGCAAACTTTTAAAATGTTGGCTAAAAGTTAAATAATTGGAAATTCAATTGGATCGGAAATTTCTAGGTTTTAGCTTCGATTCAACTAATTGATTTTCTTCATCGACGACTCCCTGCTCATCGTCTTCAGCTTTCTCTCCGTCGCTTGCCAAGTGAGTTCATCTGCAAACCCTAGGTTTTCTGTTTTCTTAATCTCATTAGGTTTTATTCTGATCCGTTGATTCATAATCTGTTCCCTTTTTGTTTGTTTGTTGTGATTTTTTTAATCTTTAGTCTTGATTTTGCAGTTATTGATATATCATTTGTTGTTGAGTAGACGGGTTGGAATTTGTATTACTTTTTTGGATCCGTTTTTCAGTTTTGTATGTGTGTTTATAAGTAGATCTGTTTTTGTGATGGATTCATTTCATTGCTATACATGTTCTTTCGCTGTTGGTAAACTATGATAGTGTAGTTTGTTTTTATTTTTACTTGGATTGGATTCATCTTTGCGTAGTTTTGAAGCTCGCGTAGTTCATTAGGTCAGCTCCTAAAGGAGAGACTGTATTTGACTAGATGAAGATAATAATGACATGGGTTGACTCAGTTAGCGAGATGGCTCAATTCTGTAGTTCGAGTCATATTGGGGGTAATTAAGAACCGCAGTCGATCCATAACAGTGCGTTAGAAATATGATTATTAGGTTTCTCTTTTAGATTTTGTGGTTTCTCGTGTTATTATCTATAGGAGCATCGAGCTGTAAGACTAGCTCAATTCATTTTATTAACATGAAGATGAATCATAAGGTTGCTCAGGTTAATTATTCTTAGGGAATAATTGAACAATAATACAGTCTGGTGAAAGGGTTATGTCTTCGCTGTTAAGTCAAGCCATGCTTATTGCTCATTTGGTGCAAAAATCACTTAAATCACGGAGCTAATTGGCTAATTCATTAAGACATGGTTGTGGTTGGACTTCACATATCTGTAACCATATAACCTTTGATGTTAATATGGGTTACATTACCATCCTGTTTTTTTACCCCTGATTTAACTATGCCACCAACATATGTGATCAGAGCATTTGTGTCTTTTCTTCTTAATTCTCTTAATCAGGGGAAGTGATATTATACTTGTTCAATGAAAATTTGAAGGTGCAAGTCATGGCTGTCATATGATCAGTGTGTTGCTGTTTCTTTTTGAATAGTTAAATCTTAGAGTCTTGTTTTCCTTTACACTAGATCCATTGAACTTGATTCTACTAAAAACCATCTCTCATCTCAGCCTTACAGCTCGACACAGCATCTATAATCTCTTTTCATTCTTCTTCAAGAGTTACAGTCACCATTAGAACATACCAATATTCATTTGAGATAACAGAGAAAACTCCCACTTAAAATGGAGATCTCACGGGATGTTCCATCACCACCAGTTTATTTTGGTTCTTGGGGCAGATTTTTTTTTTTTTTTTGGGGGGGGGGGGGTGGAGTGTGCTGTCTGTTTTGGTTATGCCATCTTATTAGTTTTCATGCTGCTTTACAGAGATGAATATATCACCATCCCTTATGTTTTAAGGAAAAACTCTCATTTACTTGCTATAGATAGTCTTCAATTAAGTCTGTAACAACCACAGCACTCTGGCTCTGCTTCTTTGTTGTATTGGAGACCATAATTTGGTGGATACCTTTATGTACTTTATTCAAATGACTGGATGTTCTACCTGTGTGCCTTCAGTCATATGCATTTCATGCACTTTCAAATATTCTTTTATGCTGATGGACTCCTCTTTTTATATACCTGGTCCTGGACTACAAATTCAATTGCACCTCTTTTCTAGAATAAATCATTTTATGCAAAGCTTGTTTTAGTTATTTAAGCATCCATGAAAGATTCACTTCTCTCGTAGTGTGCCACAAATATGTTAGAAAAAGAAGGGAATGTTGCGGATATTAACCATCCTAACGTGGTGCAGGTTAAACTGATTGGTTATATTCATTTTATTACGAGATTGTAAATTTACAAGTTATTGAATAACACAGGATGTCAGAAGAAGCACCTTTCTATCCCAGAGAAAAGCTTGTTGAGAAGCAAAAGTTTTACCAAAGCGTCCACAAGCACACATACTTGAAAGGTCGTTTTGACAAGGTCACCTCAGTGGCCATTCCAGCTGCTTTGGCTGCTTCTGCTTTGTTTATGATTGTGAGTTTCTTCGAATTTTTTCTAGATTGCTTTATCTGATGTCCCGAATCAACTCTAATGGTATTTTTGGATTATATTTCAGGGGAGAGGGATCTACAACATGTCTCATGGCATAGGGAAGAAGGAATAAATAGCGGCTACTGCTCGACTATTGTTCCTATGGTGGCTGAATTTGAAACGACCTGTTTGTTCTTTTGTTGATTTTCAATTATCAGTAGCTAATACTAGTCACTTGGATGCTGATATTAAAACATGCCGATTTATGGCATATGCTATCAGTACTCCGCAGCATAATAACACATTATCTCCTCTGTTTAGGGGTTCTGCATATTTGTATTAAACGGTGTTTGTGTGGAAATAAGCATGTCATTTTCTGGCTCTCCTTAACCCTGT</genome_strand>
        <mrna_strand>AAATTCTAAGTGTTTATATTTGCAAACTTTTAAAATGTTGGCTAAAAGTTAAATAATTGGAAATTCAATTGGATCGGAAATTTCTAGGTTTTAGCTTCGATTCAACTAATTGATTTTCTTCATCGACGACTCCCTGCTCATCGTCTTCAGCTTTCTCTCCGTCGCTTGCCAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTCAGAAGAAGCACCTTTCTATCCCAGAGAAAAGCTTGTTGAGAAGCAAAAGTTTTACCAAAGCGTCCACAAGCACACATACTTGAAAGGTCGTTTTGACAAGGTCACCTCAGTGGCCATTCCAGCTGCTTTGGCTGCTTCTGCTTTGTTTATGATT..................................................................................GGGAGAGGGATCTACAACATGTCTCATGGCATAGGGAAGAAGGAATAAATAGCGGCTACTGCTCGACTATTGTTCCTATGGTGGCTGAATTTGAAACGACCTGTTTGTTCTTTTGTTGATTTTCAATTATCAGTAGCTAATACTAGTCACTTGGATGCTGATATTAAAACATGCCGATTTATGGCATATGCTATCAGTACTCCGCAGCATAATAACACATTATCTCCTCTGTTTAGGGGTTCTGCATATTTGTATTAAACGGTGTTTGTGTGGAAATAAGCATGTCATTTTCTGGCTCTCCTTAACCCTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E593086" ref_strand="+" ref_description="SGN-E593086 [36308]">
      <seq>ggaaatcaattggatcggaattttctagggtttagcctcgattcaactaattgattttcttcatcgacgcttccctgctcatcgtcttcagctttctctccgtcgctttccaagatgtcagaagaagcacctttctatcccagagaaaagcttgttgagaagcaaaagttttaccaaagcgtccacaagcacacatacttgaaaggtcgttttgacaagatcacctcagtggccattccagctgctttggcagcttctgctttgtttatgattgggagagggatctacaacatgtctcatggcgtagggaagaaggaataaatggtggcttctgctcgaccattgttcctatggtggctgaagtttgaaagaagataatttcggacctgttttgttcttttgtggatttttaattatcagtagctaatactagtcacttggacgcagacaatagaacatgccgatttatggcatatgctatcagtactccgcagcataacacattttctcctctgttttggggttctgcatatttgtattaaacggtgtttgtgtggaaataagcatgtcaattcctggctctccttaaccctgtaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0099A03.1" temp_strand="-" temp_description="C06SLm0099A03.1  AC226730.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0099A03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="43467" stop="40335"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43167" g_stop="43054" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="113" r_length="113" r_score="0.939"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43053" i_stop="41189" i_length="1865">
            <donor d_prob="0.995" d_score="0.94"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41188" g_stop="41029" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="273" r_length="160" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41028" i_stop="40947" i_length="82">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40946" g_stop="40636" g_length="311"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="595" r_length="322" r_score="0.849"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="596" polyA_stop="609"/>
      <MATCH_line gen_id="C06SLm0099A03.1" gen_strand="-" ref_id="SGN-E593086" ref_strand="+">
        <total_alignment_score>0.904</total_alignment_score>
        <cumulative_length_of_scored_exons>585</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0099A03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E593086" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43167" e_stop="43054"/>
          <exon e_start="41188" e_stop="41029"/>
          <exon e_start="40946" e_stop="40636"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAATTCAATTGGATCGGAAATTTCTAGGTTTTAGCTTCGATTCAACTAATTGATTTTCTTCATCGACGACTCCCTGCTCATCGTCTTCAGCTTTCTCTCCGTCGCTTGCCAAGTGAGTTCATCTGCAAACCCTAGGTTTTCTGTTTTCTTAATCTCATTAGGTTTTATTCTGATCCGTTGATTCATAATCTGTTCCCTTTTTGTTTGTTTGTTGTGATTTTTTTAATCTTTAGTCTTGATTTTGCAGTTATTGATATATCATTTGTTGTTGAGTAGACGGGTTGGAATTTGTATTACTTTTTTGGATCCGTTTTTCAGTTTTGTATGTGTGTTTATAAGTAGATCTGTTTTTGTGATGGATTCATTTCATTGCTATACATGTTCTTTCGCTGTTGGTAAACTATGATAGTGTAGTTTGTTTTTATTTTTACTTGGATTGGATTCATCTTTGCGTAGTTTTGAAGCTCGCGTAGTTCATTAGGTCAGCTCCTAAAGGAGAGACTGTATTTGACTAGATGAAGATAATAATGACATGGGTTGACTCAGTTAGCGAGATGGCTCAATTCTGTAGTTCGAGTCATATTGGGGGTAATTAAGAACCGCAGTCGATCCATAACAGTGCGTTAGAAATATGATTATTAGGTTTCTCTTTTAGATTTTGTGGTTTCTCGTGTTATTATCTATAGGAGCATCGAGCTGTAAGACTAGCTCAATTCATTTTATTAACATGAAGATGAATCATAAGGTTGCTCAGGTTAATTATTCTTAGGGAATAATTGAACAATAATACAGTCTGGTGAAAGGGTTATGTCTTCGCTGTTAAGTCAAGCCATGCTTATTGCTCATTTGGTGCAAAAATCACTTAAATCACGGAGCTAATTGGCTAATTCATTAAGACATGGTTGTGGTTGGACTTCACATATCTGTAACCATATAACCTTTGATGTTAATATGGGTTACATTACCATCCTGTTTTTTTACCCCTGATTTAACTATGCCACCAACATATGTGATCAGAGCATTTGTGTCTTTTCTTCTTAATTCTCTTAATCAGGGGAAGTGATATTATACTTGTTCAATGAAAATTTGAAGGTGCAAGTCATGGCTGTCATATGATCAGTGTGTTGCTGTTTCTTTTTGAATAGTTAAATCTTAGAGTCTTGTTTTCCTTTACACTAGATCCATTGAACTTGATTCTACTAAAAACCATCTCTCATCTCAGCCTTACAGCTCGACACAGCATCTATAATCTCTTTTCATTCTTCTTCAAGAGTTACAGTCACCATTAGAACATACCAATATTCATTTGAGATAACAGAGAAAACTCCCACTTAAAATGGAGATCTCACGGGATGTTCCATCACCACCAGTTTATTTTGGTTCTTGGGGCAGATTTTTTTTTTTTTTTTGGGGGGGGGGGGGTGGAGTGTGCTGTCTGTTTTGGTTATGCCATCTTATTAGTTTTCATGCTGCTTTACAGAGATGAATATATCACCATCCCTTATGTTTTAAGGAAAAACTCTCATTTACTTGCTATAGATAGTCTTCAATTAAGTCTGTAACAACCACAGCACTCTGGCTCTGCTTCTTTGTTGTATTGGAGACCATAATTTGGTGGATACCTTTATGTACTTTATTCAAATGACTGGATGTTCTACCTGTGTGCCTTCAGTCATATGCATTTCATGCACTTTCAAATATTCTTTTATGCTGATGGACTCCTCTTTTTATATACCTGGTCCTGGACTACAAATTCAATTGCACCTCTTTTCTAGAATAAATCATTTTATGCAAAGCTTGTTTTAGTTATTTAAGCATCCATGAAAGATTCACTTCTCTCGTAGTGTGCCACAAATATGTTAGAAAAAGAAGGGAATGTTGCGGATATTAACCATCCTAACGTGGTGCAGGTTAAACTGATTGGTTATATTCATTTTATTACGAGATTGTAAATTTACAAGTTATTGAATAACACAGGATGTCAGAAGAAGCACCTTTCTATCCCAGAGAAAAGCTTGTTGAGAAGCAAAAGTTTTACCAAAGCGTCCACAAGCACACATACTTGAAAGGTCGTTTTGACAAGGTCACCTCAGTGGCCATTCCAGCTGCTTTGGCTGCTTCTGCTTTGTTTATGATTGTGAGTTTCTTCGAATTTTTTCTAGATTGCTTTATCTGATGTCCCGAATCAACTCTAATGGTATTTTTGGATTATATTTCAGGGGAGAGGGATCTACAACATGTCTCATGGCATAGGGAAGAAGGAATAAATAGCGGCTACTGCTCGACTATTGTTCCTATGGTGGCTGAA-TTT----GAA-A------C-GACCTG-TTTGTTCTTTTGTTGATTTTCAATTATCAGTAGCTAATACTAGTCACTTGGATGCTGATATTAAAACATGCCGATTTATGGCATATGCTATCAGTACTCCGCAGCATAATAACACATTATCTCCTCTGTTTAGGGGTTCTGCATATTTGTATTAAACGGTGTTTGTGTGGAAATAAGCATGTCATTTTCTGGCTCTCCTTAACCCTGT</genome_strand>
        <mrna_strand>GGAAA-TCAATTGGATCGGAATTTTCTAGGGTTTAGCCTCGATTCAACTAATTGATTTTCTTCATCGACGCTTCCCTGCTCATCGTCTTCAGCTTTCTCTCCGTCGCTTTCCAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTCAGAAGAAGCACCTTTCTATCCCAGAGAAAAGCTTGTTGAGAAGCAAAAGTTTTACCAAAGCGTCCACAAGCACACATACTTGAAAGGTCGTTTTGACAAGATCACCTCAGTGGCCATTCCAGCTGCTTTGGCAGCTTCTGCTTTGTTTATGATT..................................................................................GGGAGAGGGATCTACAACATGTCTCATGGCGTAGGGAAGAAGGAATAAATGGTGGCTTCTGCTCGACCATTGTTCCTATGGTGGCTGAAGTTTGAAAGAAGATAATTTCGGACCTGTTTTGTTCTTTTGTGGATTTTTAATTATCAGTAGCTAATACTAGTCACTTGGACGCAGACAATAGAACATGCCGATTTATGGCATATGCTATCAGTACTCCGCAGC---ATAACACATTTTCTCCTCTGTTTTGGGGTTCTGCATATTTGTATTAAACGGTGTTTGTGTGGAAATAAGCATGTCAATTCCTGGCTCTCCTTAACCCTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E720701" ref_strand="+" ref_description="SGN-E720701 [FC11CD02]">
      <seq>agaagcacctttctatcccagagaaaagcttgttgagaagcaaaagttttaccaaagcgtccacaagcacacatacttgaaaggtcgttttgacaaggtcacctcagtggccattccagctgctttggctgcttctgctttgtttatgattgggagagggatctacaacatgtctcatggcatagggaagaaggaataaatagcggctactgctcgactattgttcctatggtggctgaatttgaaacgacctgtttgttcttttgttgattttcaattatcagtagctaatactagtcacttggatgctgatattaaaacatgccgatttatggcatatgctatcagtactccgcagcataataacacattatctcctctgtttaggggttctgcatatttgtattaaacggtgtttgtgtggaaataagcatgtcattttctggctctccttaaccctgtaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0099A03.1" temp_strand="-" temp_description="C06SLm0099A03.1  AC226730.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0099A03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="41479" stop="40335"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41179" g_stop="41029" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41028" i_stop="40947" i_length="82">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40946" g_stop="40636" g_length="311"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="462" r_length="311" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="463" polyA_stop="485"/>
      <MATCH_line gen_id="C06SLm0099A03.1" gen_strand="-" ref_id="SGN-E720701" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>462</cumulative_length_of_scored_exons>
        <coverage percentage="0.953" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0099A03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E720701" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41179" e_stop="41029"/>
          <exon e_start="40946" e_stop="40636"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGCACCTTTCTATCCCAGAGAAAAGCTTGTTGAGAAGCAAAAGTTTTACCAAAGCGTCCACAAGCACACATACTTGAAAGGTCGTTTTGACAAGGTCACCTCAGTGGCCATTCCAGCTGCTTTGGCTGCTTCTGCTTTGTTTATGATTGTGAGTTTCTTCGAATTTTTTCTAGATTGCTTTATCTGATGTCCCGAATCAACTCTAATGGTATTTTTGGATTATATTTCAGGGGAGAGGGATCTACAACATGTCTCATGGCATAGGGAAGAAGGAATAAATAGCGGCTACTGCTCGACTATTGTTCCTATGGTGGCTGAATTTGAAACGACCTGTTTGTTCTTTTGTTGATTTTCAATTATCAGTAGCTAATACTAGTCACTTGGATGCTGATATTAAAACATGCCGATTTATGGCATATGCTATCAGTACTCCGCAGCATAATAACACATTATCTCCTCTGTTTAGGGGTTCTGCATATTTGTATTAAACGGTGTTTGTGTGGAAATAAGCATGTCATTTTCTGGCTCTCCTTAACCCTGT</genome_strand>
        <mrna_strand>AGAAGCACCTTTCTATCCCAGAGAAAAGCTTGTTGAGAAGCAAAAGTTTTACCAAAGCGTCCACAAGCACACATACTTGAAAGGTCGTTTTGACAAGGTCACCTCAGTGGCCATTCCAGCTGCTTTGGCTGCTTCTGCTTTGTTTATGATT..................................................................................GGGAGAGGGATCTACAACATGTCTCATGGCATAGGGAAGAAGGAATAAATAGCGGCTACTGCTCGACTATTGTTCCTATGGTGGCTGAATTTGAAACGACCTGTTTGTTCTTTTGTTGATTTTCAATTATCAGTAGCTAATACTAGTCACTTGGATGCTGATATTAAAACATGCCGATTTATGGCATATGCTATCAGTACTCCGCAGCATAATAACACATTATCTCCTCTGTTTAGGGGTTCTGCATATTTGTATTAAACGGTGTTTGTGTGGAAATAAGCATGTCATTTTCTGGCTCTCCTTAACCCTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E593858" ref_strand="+" ref_description="SGN-E593858 [37097]">
      <seq>gacctgtttgttcttttgtggatttttaattatcagtagctaatactagtcacttggacgcagacaatagaacatgccgatttatggcatatgctatcagtactccgcagcataacacattttctcctctgtttttggggttctgcatatttgtattaaacggtgtttgtgtggaaataagcatgtcagttcctggctctccttaaccctgtaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0099A03.1" temp_strand="-" temp_description="C06SLm0099A03.1  AC226730.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0099A03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="41149" stop="40335"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40849" g_stop="40636" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="212" r_length="212" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="213" polyA_stop="229"/>
      <MATCH_line gen_id="C06SLm0099A03.1" gen_strand="-" ref_id="SGN-E593858" ref_strand="+">
        <total_alignment_score>0.925</total_alignment_score>
        <cumulative_length_of_scored_exons>214</cumulative_length_of_scored_exons>
        <coverage percentage="0.934" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0099A03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E593858" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40849" e_stop="40636"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACCTGTTTGTTCTTTTGTTGATTTTCAATTATCAGTAGCTAATACTAGTCACTTGGATGCTGATATTAAAACATGCCGATTTATGGCATATGCTATCAGTACTCCGCAGCATAATAACACATTATCTCCTCTG-TTTAGGGGTTCTGCATATTTGTATTAAACGGTGTTTGTGTGGAAATAAGCATGTCATTTTCTGGCTCTCCTTAACCCTGT</genome_strand>
        <mrna_strand>GACCTGTTTGTTCTTTTGTGGATTTTTAATTATCAGTAGCTAATACTAGTCACTTGGACGCAGACAATAGAACATGCCGATTTATGGCATATGCTATCAGTACTCCGCAGC---ATAACACATTTTCTCCTCTGTTTTTGGGGTTCTGCATATTTGTATTAAACGGTGTTTGTGTGGAAATAAGCATGTCAGTTCCTGGCTCTCCTTAACCCTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E308483" ref_strand="+" ref_description="SGN-E308483 [cLEY-21-K4]">
      <seq>ttttgttgattttcaattatcagtagctaatactagtcacttggatgctgatattaaaacatgccgatttatggcatatgctatcagtactccgcagcataataacacattatctcctctgtttaggggttctgcatatttgtattaaacggtgtttgtgtggaaataagcatgtcattttctggctctccttaaccctgtaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0099A03.1" temp_strand="-" temp_description="C06SLm0099A03.1  AC226730.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0099A03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="41136" stop="40335"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40836" g_stop="40636" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="201" r_length="201" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="202" polyA_stop="212"/>
      <MATCH_line gen_id="C06SLm0099A03.1" gen_strand="-" ref_id="SGN-E308483" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>201</cumulative_length_of_scored_exons>
        <coverage percentage="0.948" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0099A03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E308483" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40836" e_stop="40636"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGTTGATTTTCAATTATCAGTAGCTAATACTAGTCACTTGGATGCTGATATTAAAACATGCCGATTTATGGCATATGCTATCAGTACTCCGCAGCATAATAACACATTATCTCCTCTGTTTAGGGGTTCTGCATATTTGTATTAAACGGTGTTTGTGTGGAAATAAGCATGTCATTTTCTGGCTCTCCTTAACCCTGT</genome_strand>
        <mrna_strand>TTTTGTTGATTTTCAATTATCAGTAGCTAATACTAGTCACTTGGATGCTGATATTAAAACATGCCGATTTATGGCATATGCTATCAGTACTCCGCAGCATAATAACACATTATCTCCTCTGTTTAGGGGTTCTGCATATTTGTATTAAACGGTGTTTGTGTGGAAATAAGCATGTCATTTTCTGGCTCTCCTTAACCCTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E309377" ref_strand="+" ref_description="SGN-E309377 [cLEY-22-K2]">
      <seq>ttttgttgattttcaattatcagtagctaatactagtcacttggatgctgatattaaaacatgccgatttatggcatatgctatcagtactccgcagcataataacacattatctcctctgtttaggggttctgcatatttgtattaaacggtgtttgtgtggaaataagcatgtcattttctggctctccttaaccctgtaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0099A03.1" temp_strand="-" temp_description="C06SLm0099A03.1  AC226730.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0099A03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="41136" stop="40335"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40836" g_stop="40636" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="201" r_length="201" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="202" polyA_stop="212"/>
      <MATCH_line gen_id="C06SLm0099A03.1" gen_strand="-" ref_id="SGN-E309377" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>201</cumulative_length_of_scored_exons>
        <coverage percentage="0.948" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0099A03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E309377" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40836" e_stop="40636"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGTTGATTTTCAATTATCAGTAGCTAATACTAGTCACTTGGATGCTGATATTAAAACATGCCGATTTATGGCATATGCTATCAGTACTCCGCAGCATAATAACACATTATCTCCTCTGTTTAGGGGTTCTGCATATTTGTATTAAACGGTGTTTGTGTGGAAATAAGCATGTCATTTTCTGGCTCTCCTTAACCCTGT</genome_strand>
        <mrna_strand>TTTTGTTGATTTTCAATTATCAGTAGCTAATACTAGTCACTTGGATGCTGATATTAAAACATGCCGATTTATGGCATATGCTATCAGTACTCCGCAGCATAATAACACATTATCTCCTCTGTTTAGGGGTTCTGCATATTTGTATTAAACGGTGTTTGTGTGGAAATAAGCATGTCATTTTCTGGCTCTCCTTAACCCTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E220580" ref_strand="+" ref_description="SGN-E220580 [cLEL-12-C3](-)">
      <seq>gtcgctgccaagatgtcagaagaaagcacctttctatcccaaaaaaaagcttgttgaaaagcaaaagttttaccaaagcgtccacaagcacacatacttaaaggtcgttttgacaaggtcacctcagtggccattccagctgctttggctgcttctgctttgtttatgattgggagagggatctacaacatgtctcatggcatagggaagaaggaataaatagcggctactgctcgactattgttcctatggtggctgaatttgaaacgacctgtttgttcttttgttgattttcaattatcagtagctaatactagtcacttggatgctgatattaaaacatgccgatttatggcatatgctatcagtactccgcagcataataacacattatctcctctgtttaggggttctgcatatttgtattaaacggtgtttgtgtggaaataagcatgtcattttctggctctccttaaccctgaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0099A03.1" temp_strand="-" temp_description="C06SLm0099A03.1  AC226730.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0099A03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="41491" stop="40335"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41188" g_stop="41029" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="171" r_length="160" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41028" i_stop="40947" i_length="82">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40946" g_stop="40638" g_length="309"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="480" r_length="309" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="482" polyA_stop="500"/>
      <MATCH_line gen_id="C06SLm0099A03.1" gen_strand="-" ref_id="SGN-E220580" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>469</cumulative_length_of_scored_exons>
        <coverage percentage="0.938" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0099A03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E220580" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41188" e_stop="41029"/>
          <exon e_start="40946" e_stop="40638"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGTCAGAAGA-AGCACCTTTCTATCCCAGAGAAAAGCTTGTTGAGAAGCAAAAGTTTTACCAAAGCGTCCACAAGCACACATACTTGAAAGGTCGTTTTGACAAGGTCACCTCAGTGGCCATTCCAGCTGCTTTGGCTGCTTCTGCTTTGTTTATGATTGTGAGTTTCTTCGAATTTTTTCTAGATTGCTTTATCTGATGTCCCGAATCAACTCTAATGGTATTTTTGGATTATATTTCAGGGGAGAGGGATCTACAACATGTCTCATGGCATAGGGAAGAAGGAATAAATAGCGGCTACTGCTCGACTATTGTTCCTATGGTGGCTGAATTTGAAACGACCTGTTTGTTCTTTTGTTGATTTTCAATTATCAGTAGCTAATACTAGTCACTTGGATGCTGATATTAAAACATGCCGATTTATGGCATATGCTATCAGTACTCCGCAGCATAATAACACATTATCTCCTCTGTTTAGGGGTTCTGCATATTTGTATTAAACGGTGTTTGTGTGGAAATAAGCATGTCATTTTCTGGCTCTCCTTAACCCT</genome_strand>
        <mrna_strand>GATGTCAGAAGAAAGCACCTTTCTATCCCAAAAAAAAGCTTGTTGAAAAGCAAAAGTTTTACCAAAGCGTCCACAAGCACACATACTT-AAAGGTCGTTTTGACAAGGTCACCTCAGTGGCCATTCCAGCTGCTTTGGCTGCTTCTGCTTTGTTTATGATT..................................................................................GGGAGAGGGATCTACAACATGTCTCATGGCATAGGGAAGAAGGAATAAATAGCGGCTACTGCTCGACTATTGTTCCTATGGTGGCTGAATTTGAAACGACCTGTTTGTTCTTTTGTTGATTTTCAATTATCAGTAGCTAATACTAGTCACTTGGATGCTGATATTAAAACATGCCGATTTATGGCATATGCTATCAGTACTCCGCAGCATAATAACACATTATCTCCTCTGTTTAGGGGTTCTGCATATTTGTATTAAACGGTGTTTGTGTGGAAATAAGCATGTCATTTTCTGGCTCTCCTTAACCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E218867" ref_strand="+" ref_description="SGN-E218867 [cLEL-18-E18](-)">
      <seq>gcttttgctttgtttatgattgggagagggatctccaacatgtctcatggcatagggaagaaggaataaatagcggctactgctcgactattgttcctatggtggctgaatttgaaacgacctgtttgttcttttgttgattttcaattatcagtagctaatactagtcacttggatgctgatattaaaacatgccgatttatggcatatgctatcagtactccgcagcataataacacattatctcctctgtttaggggttctgcatatttgtattaaacggtgtttgtgtggaaataagcatgctcattttctggctctccttaaccctaaaaataaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0099A03.1" temp_strand="-" temp_description="C06SLm0099A03.1  AC226730.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0099A03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="41349" stop="40338"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41049" g_stop="41029" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41028" i_stop="40947" i_length="82">
            <donor d_prob="0.976" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40946" g_stop="40638" g_length="309"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="331" r_length="310" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="332" polyA_stop="349"/>
      <MATCH_line gen_id="C06SLm0099A03.1" gen_strand="-" ref_id="SGN-E218867" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>330</cumulative_length_of_scored_exons>
        <coverage percentage="0.946" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0099A03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E218867" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41049" e_stop="41029"/>
          <exon e_start="40946" e_stop="40638"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTCTGCTTTGTTTATGATTGTGAGTTTCTTCGAATTTTTTCTAGATTGCTTTATCTGATGTCCCGAATCAACTCTAATGGTATTTTTGGATTATATTTCAGGGGAGAGGGATCTACAACATGTCTCATGGCATAGGGAAGAAGGAATAAATAGCGGCTACTGCTCGACTATTGTTCCTATGGTGGCTGAATTTGAAACGACCTGTTTGTTCTTTTGTTGATTTTCAATTATCAGTAGCTAATACTAGTCACTTGGATGCTGATATTAAAACATGCCGATTTATGGCATATGCTATCAGTACTCCGCAGCATAATAACACATTATCTCCTCTGTTTAGGGGTTCTGCATATTTGTATTAAACGGTGTTTGTGTGGAAATAAGCATG-TCATTTTCTGGCTCTCCTTAACCCT</genome_strand>
        <mrna_strand>GCTTTTGCTTTGTTTATGATT..................................................................................GGGAGAGGGATCTCCAACATGTCTCATGGCATAGGGAAGAAGGAATAAATAGCGGCTACTGCTCGACTATTGTTCCTATGGTGGCTGAATTTGAAACGACCTGTTTGTTCTTTTGTTGATTTTCAATTATCAGTAGCTAATACTAGTCACTTGGATGCTGATATTAAAACATGCCGATTTATGGCATATGCTATCAGTACTCCGCAGCATAATAACACATTATCTCCTCTGTTTAGGGGTTCTGCATATTTGTATTAAACGGTGTTTGTGTGGAAATAAGCATGCTCATTTTCTGGCTCTCCTTAACCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E220435" ref_strand="+" ref_description="SGN-E220435 [cLEL-12-C3](-)">
      <seq>gaatttagaaacgacctgtttgttcttttgttgattttcaattatcagtagctaatactagtcacttggatgctgatattaaaacatgccgatttatggcatatgctatcagtactccgcagcataataacacattatctcctctgtttaggggttctgcatatttgtattaaacggtgtttgtgtggaaataagcatgtcattttctggctctccttaaccctgaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0099A03.1" temp_strand="-" temp_description="C06SLm0099A03.1  AC226730.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0099A03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="41160" stop="40335"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40860" g_stop="40638" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="224" r_length="224" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="226" polyA_stop="244"/>
      <MATCH_line gen_id="C06SLm0099A03.1" gen_strand="-" ref_id="SGN-E220435" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>223</cumulative_length_of_scored_exons>
        <coverage percentage="0.914" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0099A03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E220435" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40860" e_stop="40638"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATTT-GAAACGACCTGTTTGTTCTTTTGTTGATTTTCAATTATCAGTAGCTAATACTAGTCACTTGGATGCTGATATTAAAACATGCCGATTTATGGCATATGCTATCAGTACTCCGCAGCATAATAACACATTATCTCCTCTGTTTAGGGGTTCTGCATATTTGTATTAAACGGTGTTTGTGTGGAAATAAGCATGTCATTTTCTGGCTCTCCTTAACCCT</genome_strand>
        <mrna_strand>GAATTTAGAAACGACCTGTTTGTTCTTTTGTTGATTTTCAATTATCAGTAGCTAATACTAGTCACTTGGATGCTGATATTAAAACATGCCGATTTATGGCATATGCTATCAGTACTCCGCAGCATAATAACACATTATCTCCTCTGTTTAGGGGTTCTGCATATTTGTATTAAACGGTGTTTGTGTGGAAATAAGCATGTCATTTTCTGGCTCTCCTTAACCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E717136" ref_strand="+" ref_description="SGN-E717136 [FB19AG08]">
      <seq>ccgtaaaagcacctttctatcccagagaaaagcttgttgagaagcgaaagttttaccaaagcgtccacaagcacacatacttgaaaggtcgttttgacaaggtcacctcagtgaccattccagctgctttggctgcttctgctttgtttatgattgggagagggatctacaacgtgtctcatggcatacggaacaacgaataaatagcggctactgctcgactattgttcctatggtggctgaatttgaaacgacctgtttgttcttttgttgattttcaattatcagtagctaatactagtcacttggatgctgatattaaaacatgccgatttatggcatatgctatcagtactccgcagcataataacacattatctcctctgtttaggggttctgcatatttgtattaaacggtgtttgtgtggaaataagcatgtcattttctggctctccttaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0099A03.1" temp_strand="-" temp_description="C06SLm0099A03.1  AC226730.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0099A03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="41483" stop="40342"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41183" g_stop="41029" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="155" r_length="155" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41028" i_stop="40947" i_length="82">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40946" g_stop="40640" g_length="307"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="462" r_length="307" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0099A03.1" gen_strand="-" ref_id="SGN-E717136" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>462</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0099A03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E717136" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41183" e_stop="41029"/>
          <exon e_start="40946" e_stop="40640"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAAGAAGCACCTTTCTATCCCAGAGAAAAGCTTGTTGAGAAGCAAAAGTTTTACCAAAGCGTCCACAAGCACACATACTTGAAAGGTCGTTTTGACAAGGTCACCTCAGTGGCCATTCCAGCTGCTTTGGCTGCTTCTGCTTTGTTTATGATTGTGAGTTTCTTCGAATTTTTTCTAGATTGCTTTATCTGATGTCCCGAATCAACTCTAATGGTATTTTTGGATTATATTTCAGGGGAGAGGGATCTACAACATGTCTCATGGCATAGGGAAGAAGGAATAAATAGCGGCTACTGCTCGACTATTGTTCCTATGGTGGCTGAATTTGAAACGACCTGTTTGTTCTTTTGTTGATTTTCAATTATCAGTAGCTAATACTAGTCACTTGGATGCTGATATTAAAACATGCCGATTTATGGCATATGCTATCAGTACTCCGCAGCATAATAACACATTATCTCCTCTGTTTAGGGGTTCTGCATATTTGTATTAAACGGTGTTTGTGTGGAAATAAGCATGTCATTTTCTGGCTCTCCTTAACC</genome_strand>
        <mrna_strand>CCGTAAAAGCACCTTTCTATCCCAGAGAAAAGCTTGTTGAGAAGCGAAAGTTTTACCAAAGCGTCCACAAGCACACATACTTGAAAGGTCGTTTTGACAAGGTCACCTCAGTGACCATTCCAGCTGCTTTGGCTGCTTCTGCTTTGTTTATGATT..................................................................................GGGAGAGGGATCTACAACGTGTCTCATGGCATACGGAACAACGAATAAATAGCGGCTACTGCTCGACTATTGTTCCTATGGTGGCTGAATTTGAAACGACCTGTTTGTTCTTTTGTTGATTTTCAATTATCAGTAGCTAATACTAGTCACTTGGATGCTGATATTAAAACATGCCGATTTATGGCATATGCTATCAGTACTCCGCAGCATAATAACACATTATCTCCTCTGTTTAGGGGTTCTGCATATTTGTATTAAACGGTGTTTGTGTGGAAATAAGCATGTCATTTTCTGGCTCTCCTTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E724380" ref_strand="+" ref_description="SGN-E724380 [FC23DG09]">
      <seq>aatcggccgaattgatcgacgactccctgctcatcgtcttcagctttctctccgtcgcttgccaagatgtcagaagaagcacctttctatcccagagaaaagcttgttgagaagcaaaagttttaccaaagcgtccacaagcacacatacttgaaaggtcgttttgacaaggtcacctcagtggccattccagctgctttggctgcttctgctttgtttatgattgggagagggatctacaacatgtctcatggcatagggaagaaggaataaatagcggctactgctcgactattgttcctatggtggctgaatttgaaacgacctgtttgttcttttgttgattttcaattatcagtagctaatactagtcacttggatgctgatattaaaacatgccgatttatggcatatgctatcagtactccgcagcataataacacattatctcctctgtttaggggttctgcatatttgtattaaacggtgtttgtgtggaaataagcatgtcattttctggctctccttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0099A03.1" temp_strand="-" temp_description="C06SLm0099A03.1  AC226730.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0099A03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="43407" stop="40342"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43118" g_stop="43054" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="0.877"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43053" i_stop="41189" i_length="1865">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41188" g_stop="41029" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="225" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41028" i_stop="40947" i_length="82">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40946" g_stop="40642" g_length="305"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="530" r_length="305" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="531" polyA_stop="580"/>
      <MATCH_line gen_id="C06SLm0099A03.1" gen_strand="-" ref_id="SGN-E724380" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>530</cumulative_length_of_scored_exons>
        <coverage percentage="0.914" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0099A03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E724380" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43118" e_stop="43054"/>
          <exon e_start="41188" e_stop="41029"/>
          <exon e_start="40946" e_stop="40642"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTGATTTTCTTCATCGACGACTCCCTGCTCATCGTCTTCAGCTTTCTCTCCGTCGCTTGCCAAGTGAGTTCATCTGCAAACCCTAGGTTTTCTGTTTTCTTAATCTCATTAGGTTTTATTCTGATCCGTTGATTCATAATCTGTTCCCTTTTTGTTTGTTTGTTGTGATTTTTTTAATCTTTAGTCTTGATTTTGCAGTTATTGATATATCATTTGTTGTTGAGTAGACGGGTTGGAATTTGTATTACTTTTTTGGATCCGTTTTTCAGTTTTGTATGTGTGTTTATAAGTAGATCTGTTTTTGTGATGGATTCATTTCATTGCTATACATGTTCTTTCGCTGTTGGTAAACTATGATAGTGTAGTTTGTTTTTATTTTTACTTGGATTGGATTCATCTTTGCGTAGTTTTGAAGCTCGCGTAGTTCATTAGGTCAGCTCCTAAAGGAGAGACTGTATTTGACTAGATGAAGATAATAATGACATGGGTTGACTCAGTTAGCGAGATGGCTCAATTCTGTAGTTCGAGTCATATTGGGGGTAATTAAGAACCGCAGTCGATCCATAACAGTGCGTTAGAAATATGATTATTAGGTTTCTCTTTTAGATTTTGTGGTTTCTCGTGTTATTATCTATAGGAGCATCGAGCTGTAAGACTAGCTCAATTCATTTTATTAACATGAAGATGAATCATAAGGTTGCTCAGGTTAATTATTCTTAGGGAATAATTGAACAATAATACAGTCTGGTGAAAGGGTTATGTCTTCGCTGTTAAGTCAAGCCATGCTTATTGCTCATTTGGTGCAAAAATCACTTAAATCACGGAGCTAATTGGCTAATTCATTAAGACATGGTTGTGGTTGGACTTCACATATCTGTAACCATATAACCTTTGATGTTAATATGGGTTACATTACCATCCTGTTTTTTTACCCCTGATTTAACTATGCCACCAACATATGTGATCAGAGCATTTGTGTCTTTTCTTCTTAATTCTCTTAATCAGGGGAAGTGATATTATACTTGTTCAATGAAAATTTGAAGGTGCAAGTCATGGCTGTCATATGATCAGTGTGTTGCTGTTTCTTTTTGAATAGTTAAATCTTAGAGTCTTGTTTTCCTTTACACTAGATCCATTGAACTTGATTCTACTAAAAACCATCTCTCATCTCAGCCTTACAGCTCGACACAGCATCTATAATCTCTTTTCATTCTTCTTCAAGAGTTACAGTCACCATTAGAACATACCAATATTCATTTGAGATAACAGAGAAAACTCCCACTTAAAATGGAGATCTCACGGGATGTTCCATCACCACCAGTTTATTTTGGTTCTTGGGGCAGATTTTTTTTTTTTTTTTGGGGGGGGGGGGGTGGAGTGTGCTGTCTGTTTTGGTTATGCCATCTTATTAGTTTTCATGCTGCTTTACAGAGATGAATATATCACCATCCCTTATGTTTTAAGGAAAAACTCTCATTTACTTGCTATAGATAGTCTTCAATTAAGTCTGTAACAACCACAGCACTCTGGCTCTGCTTCTTTGTTGTATTGGAGACCATAATTTGGTGGATACCTTTATGTACTTTATTCAAATGACTGGATGTTCTACCTGTGTGCCTTCAGTCATATGCATTTCATGCACTTTCAAATATTCTTTTATGCTGATGGACTCCTCTTTTTATATACCTGGTCCTGGACTACAAATTCAATTGCACCTCTTTTCTAGAATAAATCATTTTATGCAAAGCTTGTTTTAGTTATTTAAGCATCCATGAAAGATTCACTTCTCTCGTAGTGTGCCACAAATATGTTAGAAAAAGAAGGGAATGTTGCGGATATTAACCATCCTAACGTGGTGCAGGTTAAACTGATTGGTTATATTCATTTTATTACGAGATTGTAAATTTACAAGTTATTGAATAACACAGGATGTCAGAAGAAGCACCTTTCTATCCCAGAGAAAAGCTTGTTGAGAAGCAAAAGTTTTACCAAAGCGTCCACAAGCACACATACTTGAAAGGTCGTTTTGACAAGGTCACCTCAGTGGCCATTCCAGCTGCTTTGGCTGCTTCTGCTTTGTTTATGATTGTGAGTTTCTTCGAATTTTTTCTAGATTGCTTTATCTGATGTCCCGAATCAACTCTAATGGTATTTTTGGATTATATTTCAGGGGAGAGGGATCTACAACATGTCTCATGGCATAGGGAAGAAGGAATAAATAGCGGCTACTGCTCGACTATTGTTCCTATGGTGGCTGAATTTGAAACGACCTGTTTGTTCTTTTGTTGATTTTCAATTATCAGTAGCTAATACTAGTCACTTGGATGCTGATATTAAAACATGCCGATTTATGGCATATGCTATCAGTACTCCGCAGCATAATAACACATTATCTCCTCTGTTTAGGGGTTCTGCATATTTGTATTAAACGGTGTTTGTGTGGAAATAAGCATGTCATTTTCTGGCTCTCCTTAA</genome_strand>
        <mrna_strand>AATCGGCCGAATTGATCGACGACTCCCTGCTCATCGTCTTCAGCTTTCTCTCCGTCGCTTGCCAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTCAGAAGAAGCACCTTTCTATCCCAGAGAAAAGCTTGTTGAGAAGCAAAAGTTTTACCAAAGCGTCCACAAGCACACATACTTGAAAGGTCGTTTTGACAAGGTCACCTCAGTGGCCATTCCAGCTGCTTTGGCTGCTTCTGCTTTGTTTATGATT..................................................................................GGGAGAGGGATCTACAACATGTCTCATGGCATAGGGAAGAAGGAATAAATAGCGGCTACTGCTCGACTATTGTTCCTATGGTGGCTGAATTTGAAACGACCTGTTTGTTCTTTTGTTGATTTTCAATTATCAGTAGCTAATACTAGTCACTTGGATGCTGATATTAAAACATGCCGATTTATGGCATATGCTATCAGTACTCCGCAGCATAATAACACATTATCTCCTCTGTTTAGGGGTTCTGCATATTTGTATTAAACGGTGTTTGTGTGGAAATAAGCATGTCATTTTCTGGCTCTCCTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E541924" ref_strand="+" ref_description="SGN-E541924 [TUS-62-P13](-)">
      <seq>agtcatatgcatttcatgcactttcaaatattcttttatgctgatggactcctctttttatatacctggtcctggactacaaattcaattgcacctcttttctagaataaatcattttatgcaaagcttgttttagttatttaagcatccatgaaagattcacttctctcgtagtgtgccacaaatatgttagaaaaagaagggaatgttgcggatattaaccatcctaacgtggtgcaggttaaactgattggttatattcattttattacgagattgtaaatttacaagttattgaataacacaggatgtcagaagaagcacctttctatcccagagaaaagcttgttgagaagcaaaagttttaccaaagcgtccacaagcacacatacttgaaaggtcgttttgacaaggtcacctcagtggccattccagctgctttggctgcttctgctttgtttatgattgggagagggatctacaacatgtctcatggcatagggaagaaggaataaatagcggctactgctcgactattgttcctatggtggctgaatttgaaacgacctgtttgttcttttgttgattttcaattatcagtagctaatactagtcacttggatgctgatattaaaacatgccgatttatggcatatgctatcagtactccgcagcataataacacattatctcctctgtttaggggttctgcatatttgtattaaacggtgtttgtgtggaaataagcatgtcattttctggctctccttaaaaaaaaaaaaaaaaaggggggcccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0099A03.1" temp_strand="-" temp_description="C06SLm0099A03.1  AC226730.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0099A03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="41795" stop="40342"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41495" g_stop="41029" g_length="467"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="467" r_length="467" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41028" i_stop="40947" i_length="82">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40946" g_stop="40642" g_length="305"/>
          <reference_exon_boundary r_type="cDNA" r_start="468" r_stop="772" r_length="305" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="773" polyA_stop="788"/>
      <MATCH_line gen_id="C06SLm0099A03.1" gen_strand="-" ref_id="SGN-E541924" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>772</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0099A03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E541924" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41495" e_stop="41029"/>
          <exon e_start="40946" e_stop="40642"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTCATATGCATTTCATGCACTTTCAAATATTCTTTTATGCTGATGGACTCCTCTTTTTATATACCTGGTCCTGGACTACAAATTCAATTGCACCTCTTTTCTAGAATAAATCATTTTATGCAAAGCTTGTTTTAGTTATTTAAGCATCCATGAAAGATTCACTTCTCTCGTAGTGTGCCACAAATATGTTAGAAAAAGAAGGGAATGTTGCGGATATTAACCATCCTAACGTGGTGCAGGTTAAACTGATTGGTTATATTCATTTTATTACGAGATTGTAAATTTACAAGTTATTGAATAACACAGGATGTCAGAAGAAGCACCTTTCTATCCCAGAGAAAAGCTTGTTGAGAAGCAAAAGTTTTACCAAAGCGTCCACAAGCACACATACTTGAAAGGTCGTTTTGACAAGGTCACCTCAGTGGCCATTCCAGCTGCTTTGGCTGCTTCTGCTTTGTTTATGATTGTGAGTTTCTTCGAATTTTTTCTAGATTGCTTTATCTGATGTCCCGAATCAACTCTAATGGTATTTTTGGATTATATTTCAGGGGAGAGGGATCTACAACATGTCTCATGGCATAGGGAAGAAGGAATAAATAGCGGCTACTGCTCGACTATTGTTCCTATGGTGGCTGAATTTGAAACGACCTGTTTGTTCTTTTGTTGATTTTCAATTATCAGTAGCTAATACTAGTCACTTGGATGCTGATATTAAAACATGCCGATTTATGGCATATGCTATCAGTACTCCGCAGCATAATAACACATTATCTCCTCTGTTTAGGGGTTCTGCATATTTGTATTAAACGGTGTTTGTGTGGAAATAAGCATGTCATTTTCTGGCTCTCCTTAA</genome_strand>
        <mrna_strand>AGTCATATGCATTTCATGCACTTTCAAATATTCTTTTATGCTGATGGACTCCTCTTTTTATATACCTGGTCCTGGACTACAAATTCAATTGCACCTCTTTTCTAGAATAAATCATTTTATGCAAAGCTTGTTTTAGTTATTTAAGCATCCATGAAAGATTCACTTCTCTCGTAGTGTGCCACAAATATGTTAGAAAAAGAAGGGAATGTTGCGGATATTAACCATCCTAACGTGGTGCAGGTTAAACTGATTGGTTATATTCATTTTATTACGAGATTGTAAATTTACAAGTTATTGAATAACACAGGATGTCAGAAGAAGCACCTTTCTATCCCAGAGAAAAGCTTGTTGAGAAGCAAAAGTTTTACCAAAGCGTCCACAAGCACACATACTTGAAAGGTCGTTTTGACAAGGTCACCTCAGTGGCCATTCCAGCTGCTTTGGCTGCTTCTGCTTTGTTTATGATT..................................................................................GGGAGAGGGATCTACAACATGTCTCATGGCATAGGGAAGAAGGAATAAATAGCGGCTACTGCTCGACTATTGTTCCTATGGTGGCTGAATTTGAAACGACCTGTTTGTTCTTTTGTTGATTTTCAATTATCAGTAGCTAATACTAGTCACTTGGATGCTGATATTAAAACATGCCGATTTATGGCATATGCTATCAGTACTCCGCAGCATAATAACACATTATCTCCTCTGTTTAGGGGTTCTGCATATTTGTATTAAACGGTGTTTGTGTGGAAATAAGCATGTCATTTTCTGGCTCTCCTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E597970" ref_strand="+" ref_description="SGN-E597970 [73636]">
      <seq>ttcggacctgtttgttcttttgtggatttttaattatcagtagctaatactagtcacttggacgcagacaatagaacatgccgatttatggcatatgctatcagtactccgcagcataacacattttctcctctgtttttggggttctgcatatttgtattaaacggtgtttgtgtggaaataagcatgtcagttcctggctctccttaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0099A03.1" temp_strand="-" temp_description="C06SLm0099A03.1  AC226730.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0099A03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="41149" stop="40342"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40853" g_stop="40642" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="210" r_length="210" r_score="0.906"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="211" polyA_stop="223"/>
      <MATCH_line gen_id="C06SLm0099A03.1" gen_strand="-" ref_id="SGN-E597970" ref_strand="+">
        <total_alignment_score>0.906</total_alignment_score>
        <cumulative_length_of_scored_exons>212</cumulative_length_of_scored_exons>
        <coverage percentage="0.951" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0099A03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E597970" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40853" e_stop="40642"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACGACCTGTTTGTTCTTTTGTTGATTTTCAATTATCAGTAGCTAATACTAGTCACTTGGATGCTGATATTAAAACATGCCGATTTATGGCATATGCTATCAGTACTCCGCAGCATAATAACACATTATCTCCTCTG-TTTAGGGGTTCTGCATATTTGTATTAAACGGTGTTTGTGTGGAAATAAGCATGTCATTTTCTGGCTCTCCTTAA</genome_strand>
        <mrna_strand>TTCGGACCTGTTTGTTCTTTTGTGGATTTTTAATTATCAGTAGCTAATACTAGTCACTTGGACGCAGACAATAGAACATGCCGATTTATGGCATATGCTATCAGTACTCCGCAGC---ATAACACATTTTCTCCTCTGTTTTTGGGGTTCTGCATATTTGTATTAAACGGTGTTTGTGTGGAAATAAGCATGTCAGTTCCTGGCTCTCCTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E309391" ref_strand="+" ref_description="SGN-E309391 [cLEY-22-D7]">
      <seq>ttcttttgttgattttcaattatcagtagctaatactagtcacttggatgctgatattaaaacatgccgatttatggcatatgctatcagtactccgcagcataataacacattatctcctctgtttaggggttctgcatatttgtattaaacggtgtttgtgtggaaataagcatgtcattttctggctctcctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0099A03.1" temp_strand="-" temp_description="C06SLm0099A03.1  AC226730.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0099A03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="41139" stop="40344"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40839" g_stop="40644" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="196" r_length="196" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0099A03.1" gen_strand="-" ref_id="SGN-E309391" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>196</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0099A03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E309391" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40839" e_stop="40644"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTTTGTTGATTTTCAATTATCAGTAGCTAATACTAGTCACTTGGATGCTGATATTAAAACATGCCGATTTATGGCATATGCTATCAGTACTCCGCAGCATAATAACACATTATCTCCTCTGTTTAGGGGTTCTGCATATTTGTATTAAACGGTGTTTGTGTGGAAATAAGCATGTCATTTTCTGGCTCTCCTT</genome_strand>
        <mrna_strand>TTCTTTTGTTGATTTTCAATTATCAGTAGCTAATACTAGTCACTTGGATGCTGATATTAAAACATGCCGATTTATGGCATATGCTATCAGTACTCCGCAGCATAATAACACATTATCTCCTCTGTTTAGGGGTTCTGCATATTTGTATTAAACGGTGTTTGTGTGGAAATAAGCATGTCATTTTCTGGCTCTCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E717130" ref_strand="+" ref_description="SGN-E717130 [FB19AD03]">
      <seq>cccattaagcaccatttctatcccaaagaaaagcttgatgagaaccggaagggttaccaaaccgtcaccagtacacatacttgaaaagacattttgacaaggtcacctcagtggccattccagctgctttggctgcttctgctttgtttatgattgggagagggatctacaacatgtctcatggcatagggaagaaggaataaatagcggctactgctcgactattgttcctatggtggctgaatttgaaacgacctgtttgtctcttttgttgattttcaattatcagtagctaatactagtcacttggatgctgatattaaaacatgccgatttatggcatatgctatcactactccgcaacataataacacattatctcctctgattaggggttctgcatatttgtaattaaacggtgtttgtgtggaaataagcatgtcattttctggctctcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0099A03.1" temp_strand="-" temp_description="C06SLm0099A03.1  AC226730.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0099A03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="41477" stop="40346"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41183" g_stop="41029" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="155" r_length="155" r_score="0.871"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41028" i_stop="40947" i_length="82">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40946" g_stop="40646" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="458" r_length="303" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0099A03.1" gen_strand="-" ref_id="SGN-E717130" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>456</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0099A03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E717130" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41183" e_stop="41029"/>
          <exon e_start="40946" e_stop="40646"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAAGAAGCACC-TTTCTATCCCAGAGAAAAGCTTGTTGAGAAGCAAAAGTTTTACCAAAGCGTCCACAAGCACACATACTTGAAAGGTCGTTTTGACAAGGTCACCTCAGTGGCCATTCCAGCTGCTTTGGCTGCTTCTGCTTTGTTTATGATTGTGAGTTTCTTCGAATTTTTTCTAGATTGCTTTATCTGATGTCCCGAATCAACTCTAATGGTATTTTTGGATTATATTTCAGGGGAGAGGGATCTACAACATGTCTCATGGCATAGGGAAGAAGGAATAAATAGCGGCTACTGCTCGACTATTGTTCCTATGGTGGCTGAATTTGAAACGACCTGTTTGT-TCTTTTGTTGATTTTCAATTATCAGTAGCTAATACTAGTCACTTGGATGCTGATATTAAAACATGCCGATTTATGGCATATGCTATCAGTACTCCGCAGCATAATAACACATTATCTCCTCTGTTTAGGGGTTCTGCATATTTGT-ATTAAACGGTGTTTGTGTGGAAATAAGCATGTCATTTTCTGGCTCTCC</genome_strand>
        <mrna_strand>CCCATTAAGCACCATTTCTATCCCAAAGAAAAGCTTGATGAGAACCGGAAGGGTTACCAAACCGT-CACCAGTACACATACTTGAAAAGACATTTTGACAAGGTCACCTCAGTGGCCATTCCAGCTGCTTTGGCTGCTTCTGCTTTGTTTATGATT..................................................................................GGGAGAGGGATCTACAACATGTCTCATGGCATAGGGAAGAAGGAATAAATAGCGGCTACTGCTCGACTATTGTTCCTATGGTGGCTGAATTTGAAACGACCTGTTTGTCTCTTTTGTTGATTTTCAATTATCAGTAGCTAATACTAGTCACTTGGATGCTGATATTAAAACATGCCGATTTATGGCATATGCTATCACTACTCCGCAACATAATAACACATTATCTCCTCTGATTAGGGGTTCTGCATATTTGTAATTAAACGGTGTTTGTGTGGAAATAAGCATGTCATTTTCTGGCTCTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E577759" ref_strand="-" ref_description="SGN-E577759 [LE15CG10]">
      <seq>agaagaagcacctttctatcccagagaaaagcttgttgagaagcaaaagttttaccaaagcgtccacaagcacacatacttgaaaggtcgttttgacaaggtcacctcagtggccattccagctgctttggctgcttctgctttgtttatgattgggagagggatctacaacatgtctcatggcatagggaagaaggaataaatagcggctactgctcgactattgttcctatggtggctgaatttgaaacgacctgtttgttcttttgttgattttcaattatcagtagctaatactagtcacttggatgctgatattaaaacatgccgatttatggcatatgctatcagtactccgcagcataataacacattatctcctctgtttaggggttctgcatatttgtattaaacggtgtttgtgtggaaataagcatgtcattttctggctctcaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0099A03.1" temp_strand="-" temp_description="C06SLm0099A03.1  AC226730.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0099A03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="41482" stop="40347"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41182" g_stop="41029" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="154" r_length="154" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41028" i_stop="40947" i_length="82">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40946" g_stop="40647" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="454" r_length="300" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="455" polyA_stop="476"/>
      <MATCH_line gen_id="C06SLm0099A03.1" gen_strand="-" ref_id="SGN-E577759" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>454</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0099A03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E577759" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="41182" e_stop="41029"/>
          <exon e_start="40946" e_stop="40647"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGAAGCACCTTTCTATCCCAGAGAAAAGCTTGTTGAGAAGCAAAAGTTTTACCAAAGCGTCCACAAGCACACATACTTGAAAGGTCGTTTTGACAAGGTCACCTCAGTGGCCATTCCAGCTGCTTTGGCTGCTTCTGCTTTGTTTATGATTGTGAGTTTCTTCGAATTTTTTCTAGATTGCTTTATCTGATGTCCCGAATCAACTCTAATGGTATTTTTGGATTATATTTCAGGGGAGAGGGATCTACAACATGTCTCATGGCATAGGGAAGAAGGAATAAATAGCGGCTACTGCTCGACTATTGTTCCTATGGTGGCTGAATTTGAAACGACCTGTTTGTTCTTTTGTTGATTTTCAATTATCAGTAGCTAATACTAGTCACTTGGATGCTGATATTAAAACATGCCGATTTATGGCATATGCTATCAGTACTCCGCAGCATAATAACACATTATCTCCTCTGTTTAGGGGTTCTGCATATTTGTATTAAACGGTGTTTGTGTGGAAATAAGCATGTCATTTTCTGGCTCTC</genome_strand>
        <mrna_strand>AGAAGAAGCACCTTTCTATCCCAGAGAAAAGCTTGTTGAGAAGCAAAAGTTTTACCAAAGCGTCCACAAGCACACATACTTGAAAGGTCGTTTTGACAAGGTCACCTCAGTGGCCATTCCAGCTGCTTTGGCTGCTTCTGCTTTGTTTATGATT..................................................................................GGGAGAGGGATCTACAACATGTCTCATGGCATAGGGAAGAAGGAATAAATAGCGGCTACTGCTCGACTATTGTTCCTATGGTGGCTGAATTTGAAACGACCTGTTTGTTCTTTTGTTGATTTTCAATTATCAGTAGCTAATACTAGTCACTTGGATGCTGATATTAAAACATGCCGATTTATGGCATATGCTATCAGTACTCCGCAGCATAATAACACATTATCTCCTCTGTTTAGGGGTTCTGCATATTTGTATTAAACGGTGTTTGTGTGGAAATAAGCATGTCATTTTCTGGCTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E713172" ref_strand="+" ref_description="SGN-E713172 [FB06DF11]">
      <seq>atcgtcttcagctttctctccgtcgcttgccaagatgtcagaagaagcacctttctatcccagagaaaagcttgttgagaagcaaaagttttaccaaagcgtccacaagcacacatacttgaaaggtcgttttgacaaggtcacctcagtggccattccagctgctttggctgcttctgctttgtttatgattgggagagggatctacaacatgtctcatggcatagggaagaaggaataaatagcggctactgctcgactattgttcctatggtggctgaatttgaaacgacctgtttgttcttttgttgattttcaattatcagtagctaatactagtcacttggatgctgatattaaaacatgccgatttatggcatatgctatcagtactccgcagcataataacacattatctcctctgtttaggggttctgcatatttgtattaaacggtgtttgtgtggaaataagcatgtcattttctggctaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0099A03.1" temp_strand="-" temp_description="C06SLm0099A03.1  AC226730.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0099A03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="43386" stop="40350"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43086" g_stop="43054" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43053" i_stop="41189" i_length="1865">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41188" g_stop="41029" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="193" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41028" i_stop="40947" i_length="82">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40946" g_stop="40653" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="487" r_length="294" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="491" polyA_stop="509"/>
      <MATCH_line gen_id="C06SLm0099A03.1" gen_strand="-" ref_id="SGN-E713172" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>487</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0099A03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E713172" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43086" e_stop="43054"/>
          <exon e_start="41188" e_stop="41029"/>
          <exon e_start="40946" e_stop="40653"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCGTCTTCAGCTTTCTCTCCGTCGCTTGCCAAGTGAGTTCATCTGCAAACCCTAGGTTTTCTGTTTTCTTAATCTCATTAGGTTTTATTCTGATCCGTTGATTCATAATCTGTTCCCTTTTTGTTTGTTTGTTGTGATTTTTTTAATCTTTAGTCTTGATTTTGCAGTTATTGATATATCATTTGTTGTTGAGTAGACGGGTTGGAATTTGTATTACTTTTTTGGATCCGTTTTTCAGTTTTGTATGTGTGTTTATAAGTAGATCTGTTTTTGTGATGGATTCATTTCATTGCTATACATGTTCTTTCGCTGTTGGTAAACTATGATAGTGTAGTTTGTTTTTATTTTTACTTGGATTGGATTCATCTTTGCGTAGTTTTGAAGCTCGCGTAGTTCATTAGGTCAGCTCCTAAAGGAGAGACTGTATTTGACTAGATGAAGATAATAATGACATGGGTTGACTCAGTTAGCGAGATGGCTCAATTCTGTAGTTCGAGTCATATTGGGGGTAATTAAGAACCGCAGTCGATCCATAACAGTGCGTTAGAAATATGATTATTAGGTTTCTCTTTTAGATTTTGTGGTTTCTCGTGTTATTATCTATAGGAGCATCGAGCTGTAAGACTAGCTCAATTCATTTTATTAACATGAAGATGAATCATAAGGTTGCTCAGGTTAATTATTCTTAGGGAATAATTGAACAATAATACAGTCTGGTGAAAGGGTTATGTCTTCGCTGTTAAGTCAAGCCATGCTTATTGCTCATTTGGTGCAAAAATCACTTAAATCACGGAGCTAATTGGCTAATTCATTAAGACATGGTTGTGGTTGGACTTCACATATCTGTAACCATATAACCTTTGATGTTAATATGGGTTACATTACCATCCTGTTTTTTTACCCCTGATTTAACTATGCCACCAACATATGTGATCAGAGCATTTGTGTCTTTTCTTCTTAATTCTCTTAATCAGGGGAAGTGATATTATACTTGTTCAATGAAAATTTGAAGGTGCAAGTCATGGCTGTCATATGATCAGTGTGTTGCTGTTTCTTTTTGAATAGTTAAATCTTAGAGTCTTGTTTTCCTTTACACTAGATCCATTGAACTTGATTCTACTAAAAACCATCTCTCATCTCAGCCTTACAGCTCGACACAGCATCTATAATCTCTTTTCATTCTTCTTCAAGAGTTACAGTCACCATTAGAACATACCAATATTCATTTGAGATAACAGAGAAAACTCCCACTTAAAATGGAGATCTCACGGGATGTTCCATCACCACCAGTTTATTTTGGTTCTTGGGGCAGATTTTTTTTTTTTTTTTGGGGGGGGGGGGGTGGAGTGTGCTGTCTGTTTTGGTTATGCCATCTTATTAGTTTTCATGCTGCTTTACAGAGATGAATATATCACCATCCCTTATGTTTTAAGGAAAAACTCTCATTTACTTGCTATAGATAGTCTTCAATTAAGTCTGTAACAACCACAGCACTCTGGCTCTGCTTCTTTGTTGTATTGGAGACCATAATTTGGTGGATACCTTTATGTACTTTATTCAAATGACTGGATGTTCTACCTGTGTGCCTTCAGTCATATGCATTTCATGCACTTTCAAATATTCTTTTATGCTGATGGACTCCTCTTTTTATATACCTGGTCCTGGACTACAAATTCAATTGCACCTCTTTTCTAGAATAAATCATTTTATGCAAAGCTTGTTTTAGTTATTTAAGCATCCATGAAAGATTCACTTCTCTCGTAGTGTGCCACAAATATGTTAGAAAAAGAAGGGAATGTTGCGGATATTAACCATCCTAACGTGGTGCAGGTTAAACTGATTGGTTATATTCATTTTATTACGAGATTGTAAATTTACAAGTTATTGAATAACACAGGATGTCAGAAGAAGCACCTTTCTATCCCAGAGAAAAGCTTGTTGAGAAGCAAAAGTTTTACCAAAGCGTCCACAAGCACACATACTTGAAAGGTCGTTTTGACAAGGTCACCTCAGTGGCCATTCCAGCTGCTTTGGCTGCTTCTGCTTTGTTTATGATTGTGAGTTTCTTCGAATTTTTTCTAGATTGCTTTATCTGATGTCCCGAATCAACTCTAATGGTATTTTTGGATTATATTTCAGGGGAGAGGGATCTACAACATGTCTCATGGCATAGGGAAGAAGGAATAAATAGCGGCTACTGCTCGACTATTGTTCCTATGGTGGCTGAATTTGAAACGACCTGTTTGTTCTTTTGTTGATTTTCAATTATCAGTAGCTAATACTAGTCACTTGGATGCTGATATTAAAACATGCCGATTTATGGCATATGCTATCAGTACTCCGCAGCATAATAACACATTATCTCCTCTGTTTAGGGGTTCTGCATATTTGTATTAAACGGTGTTTGTGTGGAAATAAGCATGTCATTTTCTG</genome_strand>
        <mrna_strand>ATCGTCTTCAGCTTTCTCTCCGTCGCTTGCCAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTCAGAAGAAGCACCTTTCTATCCCAGAGAAAAGCTTGTTGAGAAGCAAAAGTTTTACCAAAGCGTCCACAAGCACACATACTTGAAAGGTCGTTTTGACAAGGTCACCTCAGTGGCCATTCCAGCTGCTTTGGCTGCTTCTGCTTTGTTTATGATT..................................................................................GGGAGAGGGATCTACAACATGTCTCATGGCATAGGGAAGAAGGAATAAATAGCGGCTACTGCTCGACTATTGTTCCTATGGTGGCTGAATTTGAAACGACCTGTTTGTTCTTTTGTTGATTTTCAATTATCAGTAGCTAATACTAGTCACTTGGATGCTGATATTAAAACATGCCGATTTATGGCATATGCTATCAGTACTCCGCAGCATAATAACACATTATCTCCTCTGTTTAGGGGTTCTGCATATTTGTATTAAACGGTGTTTGTGTGGAAATAAGCATGTCATTTTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E243241" ref_strand="+" ref_description="SGN-E243241 [cLEE-2-O20]">
      <seq>cgacttcagctttctctccgtcgcttgccaagatgtcagaagaagcacctttctatcccagagaaaagcttgttgagaagcaaaagttttaccaaagcgttcacaagcacacatacttgaaaggtcgttttgacaaggtcacctcagtggccattccagctgctttggctgcttctgctttgattatgattgggagagggatctacaacatgtctcatggcatagggaagaaggaataaatagcggctactgctcgactattgttcctatggtggctgaatttgaaacgacctgtttgatcttttgctgattttcaattatcagtagctaatactagtcacttggatgctgatattaaaacatgccgatctatggcatatgctatcagtactccgcagcataataacacattatctcctctgtttaggggttctgcatatttgtattaaacggtgtttgtgtggcaataagcatgtcattttctggcagaagaagccaaaaaaaaaaananaaaaaaaaaaaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0099A03.1" temp_strand="-" temp_description="C06SLm0099A03.1  AC226730.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0099A03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="43384" stop="40351"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43084" g_stop="43054" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43053" i_stop="41189" i_length="1865">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41188" g_stop="41029" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="191" r_length="160" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41028" i_stop="40947" i_length="82">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40946" g_stop="40653" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="485" r_length="294" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="498" polyA_stop="510"/>
      <MATCH_line gen_id="C06SLm0099A03.1" gen_strand="-" ref_id="SGN-E243241" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>485</cumulative_length_of_scored_exons>
        <coverage percentage="0.922" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0099A03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E243241" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43084" e_stop="43054"/>
          <exon e_start="41188" e_stop="41029"/>
          <exon e_start="40946" e_stop="40653"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTCTTCAGCTTTCTCTCCGTCGCTTGCCAAGTGAGTTCATCTGCAAACCCTAGGTTTTCTGTTTTCTTAATCTCATTAGGTTTTATTCTGATCCGTTGATTCATAATCTGTTCCCTTTTTGTTTGTTTGTTGTGATTTTTTTAATCTTTAGTCTTGATTTTGCAGTTATTGATATATCATTTGTTGTTGAGTAGACGGGTTGGAATTTGTATTACTTTTTTGGATCCGTTTTTCAGTTTTGTATGTGTGTTTATAAGTAGATCTGTTTTTGTGATGGATTCATTTCATTGCTATACATGTTCTTTCGCTGTTGGTAAACTATGATAGTGTAGTTTGTTTTTATTTTTACTTGGATTGGATTCATCTTTGCGTAGTTTTGAAGCTCGCGTAGTTCATTAGGTCAGCTCCTAAAGGAGAGACTGTATTTGACTAGATGAAGATAATAATGACATGGGTTGACTCAGTTAGCGAGATGGCTCAATTCTGTAGTTCGAGTCATATTGGGGGTAATTAAGAACCGCAGTCGATCCATAACAGTGCGTTAGAAATATGATTATTAGGTTTCTCTTTTAGATTTTGTGGTTTCTCGTGTTATTATCTATAGGAGCATCGAGCTGTAAGACTAGCTCAATTCATTTTATTAACATGAAGATGAATCATAAGGTTGCTCAGGTTAATTATTCTTAGGGAATAATTGAACAATAATACAGTCTGGTGAAAGGGTTATGTCTTCGCTGTTAAGTCAAGCCATGCTTATTGCTCATTTGGTGCAAAAATCACTTAAATCACGGAGCTAATTGGCTAATTCATTAAGACATGGTTGTGGTTGGACTTCACATATCTGTAACCATATAACCTTTGATGTTAATATGGGTTACATTACCATCCTGTTTTTTTACCCCTGATTTAACTATGCCACCAACATATGTGATCAGAGCATTTGTGTCTTTTCTTCTTAATTCTCTTAATCAGGGGAAGTGATATTATACTTGTTCAATGAAAATTTGAAGGTGCAAGTCATGGCTGTCATATGATCAGTGTGTTGCTGTTTCTTTTTGAATAGTTAAATCTTAGAGTCTTGTTTTCCTTTACACTAGATCCATTGAACTTGATTCTACTAAAAACCATCTCTCATCTCAGCCTTACAGCTCGACACAGCATCTATAATCTCTTTTCATTCTTCTTCAAGAGTTACAGTCACCATTAGAACATACCAATATTCATTTGAGATAACAGAGAAAACTCCCACTTAAAATGGAGATCTCACGGGATGTTCCATCACCACCAGTTTATTTTGGTTCTTGGGGCAGATTTTTTTTTTTTTTTTGGGGGGGGGGGGGTGGAGTGTGCTGTCTGTTTTGGTTATGCCATCTTATTAGTTTTCATGCTGCTTTACAGAGATGAATATATCACCATCCCTTATGTTTTAAGGAAAAACTCTCATTTACTTGCTATAGATAGTCTTCAATTAAGTCTGTAACAACCACAGCACTCTGGCTCTGCTTCTTTGTTGTATTGGAGACCATAATTTGGTGGATACCTTTATGTACTTTATTCAAATGACTGGATGTTCTACCTGTGTGCCTTCAGTCATATGCATTTCATGCACTTTCAAATATTCTTTTATGCTGATGGACTCCTCTTTTTATATACCTGGTCCTGGACTACAAATTCAATTGCACCTCTTTTCTAGAATAAATCATTTTATGCAAAGCTTGTTTTAGTTATTTAAGCATCCATGAAAGATTCACTTCTCTCGTAGTGTGCCACAAATATGTTAGAAAAAGAAGGGAATGTTGCGGATATTAACCATCCTAACGTGGTGCAGGTTAAACTGATTGGTTATATTCATTTTATTACGAGATTGTAAATTTACAAGTTATTGAATAACACAGGATGTCAGAAGAAGCACCTTTCTATCCCAGAGAAAAGCTTGTTGAGAAGCAAAAGTTTTACCAAAGCGTCCACAAGCACACATACTTGAAAGGTCGTTTTGACAAGGTCACCTCAGTGGCCATTCCAGCTGCTTTGGCTGCTTCTGCTTTGTTTATGATTGTGAGTTTCTTCGAATTTTTTCTAGATTGCTTTATCTGATGTCCCGAATCAACTCTAATGGTATTTTTGGATTATATTTCAGGGGAGAGGGATCTACAACATGTCTCATGGCATAGGGAAGAAGGAATAAATAGCGGCTACTGCTCGACTATTGTTCCTATGGTGGCTGAATTTGAAACGACCTGTTTGTTCTTTTGTTGATTTTCAATTATCAGTAGCTAATACTAGTCACTTGGATGCTGATATTAAAACATGCCGATTTATGGCATATGCTATCAGTACTCCGCAGCATAATAACACATTATCTCCTCTGTTTAGGGGTTCTGCATATTTGTATTAAACGGTGTTTGTGTGGAAATAAGCATGTCATTTTCTG</genome_strand>
        <mrna_strand>CGACTTCAGCTTTCTCTCCGTCGCTTGCCAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTCAGAAGAAGCACCTTTCTATCCCAGAGAAAAGCTTGTTGAGAAGCAAAAGTTTTACCAAAGCGTTCACAAGCACACATACTTGAAAGGTCGTTTTGACAAGGTCACCTCAGTGGCCATTCCAGCTGCTTTGGCTGCTTCTGCTTTGATTATGATT..................................................................................GGGAGAGGGATCTACAACATGTCTCATGGCATAGGGAAGAAGGAATAAATAGCGGCTACTGCTCGACTATTGTTCCTATGGTGGCTGAATTTGAAACGACCTGTTTGATCTTTTGCTGATTTTCAATTATCAGTAGCTAATACTAGTCACTTGGATGCTGATATTAAAACATGCCGATCTATGGCATATGCTATCAGTACTCCGCAGCATAATAACACATTATCTCCTCTGTTTAGGGGTTCTGCATATTTGTATTAAACGGTGTTTGTGTGGCAATAAGCATGTCATTTTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E222950" ref_strand="+" ref_description="SGN-E222950 [cLEL-14-K7](-)">
      <seq>aagttttaccaaagcgtccacaagcacacatacttgaaaggtcgttttgacaaggtcacctcagtggccattccagctgctttggctgcttctgctttgtttatgattgggagagggatctacnaacatgtctcatggcatagggaagaaggaataaatagcggctactgctcgactattgttcctatggtggctgaatttgaaacgacctgtttgttcttttgttgattttcaattatcagtagctaatactagtcacttggatgctgatattaaaacatgccgatttatggcatatgctatcagtactccgcagcataataacacattatctcctctgtttaggggttctgcatatttgtattaaacggtgtttgtgtggaaataagcatgtcattttctggcaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0099A03.1" temp_strand="-" temp_description="C06SLm0099A03.1  AC226730.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0099A03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="41436" stop="40351"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41136" g_stop="41029" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="108" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41028" i_stop="40947" i_length="82">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40946" g_stop="40653" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="403" r_length="295" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="406" polyA_stop="426"/>
      <MATCH_line gen_id="C06SLm0099A03.1" gen_strand="-" ref_id="SGN-E222950" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>402</cumulative_length_of_scored_exons>
        <coverage percentage="0.944" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0099A03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E222950" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41136" e_stop="41029"/>
          <exon e_start="40946" e_stop="40653"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTTTTACCAAAGCGTCCACAAGCACACATACTTGAAAGGTCGTTTTGACAAGGTCACCTCAGTGGCCATTCCAGCTGCTTTGGCTGCTTCTGCTTTGTTTATGATTGTGAGTTTCTTCGAATTTTTTCTAGATTGCTTTATCTGATGTCCCGAATCAACTCTAATGGTATTTTTGGATTATATTTCAGGGGAGAGGGATCTAC-AACATGTCTCATGGCATAGGGAAGAAGGAATAAATAGCGGCTACTGCTCGACTATTGTTCCTATGGTGGCTGAATTTGAAACGACCTGTTTGTTCTTTTGTTGATTTTCAATTATCAGTAGCTAATACTAGTCACTTGGATGCTGATATTAAAACATGCCGATTTATGGCATATGCTATCAGTACTCCGCAGCATAATAACACATTATCTCCTCTGTTTAGGGGTTCTGCATATTTGTATTAAACGGTGTTTGTGTGGAAATAAGCATGTCATTTTCTG</genome_strand>
        <mrna_strand>AAGTTTTACCAAAGCGTCCACAAGCACACATACTTGAAAGGTCGTTTTGACAAGGTCACCTCAGTGGCCATTCCAGCTGCTTTGGCTGCTTCTGCTTTGTTTATGATT..................................................................................GGGAGAGGGATCTACNAACATGTCTCATGGCATAGGGAAGAAGGAATAAATAGCGGCTACTGCTCGACTATTGTTCCTATGGTGGCTGAATTTGAAACGACCTGTTTGTTCTTTTGTTGATTTTCAATTATCAGTAGCTAATACTAGTCACTTGGATGCTGATATTAAAACATGCCGATTTATGGCATATGCTATCAGTACTCCGCAGCATAATAACACATTATCTCCTCTGTTTAGGGGTTCTGCATATTTGTATTAAACGGTGTTTGTGTGGAAATAAGCATGTCATTTTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E223461" ref_strand="+" ref_description="SGN-E223461 [cLEL-14-K7](-)">
      <seq>aaggtcacctcagtggccattccagctgctttggctgcttctgctttgtttatgattgggagagggatctacaacatgtctcatggcatagggaagaaggaataaatagcggctactgctcgactattgttcctatggtggctgaatttgaaacgacctgtttgttcttttgttgattttcaattatcagtagctaatactagtcacttggatgctgatattaaaacatgccgatttatggcatatgctatcagtactccgcagcataataacacattatctcctctgtttaggggttctgcatatttgtattaaacggtgtttgtgtggaaataagcatgtcattttctggcaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0099A03.1" temp_strand="-" temp_description="C06SLm0099A03.1  AC226730.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0099A03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="41385" stop="40351"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41085" g_stop="41029" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41028" i_stop="40947" i_length="82">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40946" g_stop="40653" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="351" r_length="294" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="354" polyA_stop="374"/>
      <MATCH_line gen_id="C06SLm0099A03.1" gen_strand="-" ref_id="SGN-E223461" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>351</cumulative_length_of_scored_exons>
        <coverage percentage="0.939" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0099A03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E223461" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41085" e_stop="41029"/>
          <exon e_start="40946" e_stop="40653"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGTCACCTCAGTGGCCATTCCAGCTGCTTTGGCTGCTTCTGCTTTGTTTATGATTGTGAGTTTCTTCGAATTTTTTCTAGATTGCTTTATCTGATGTCCCGAATCAACTCTAATGGTATTTTTGGATTATATTTCAGGGGAGAGGGATCTACAACATGTCTCATGGCATAGGGAAGAAGGAATAAATAGCGGCTACTGCTCGACTATTGTTCCTATGGTGGCTGAATTTGAAACGACCTGTTTGTTCTTTTGTTGATTTTCAATTATCAGTAGCTAATACTAGTCACTTGGATGCTGATATTAAAACATGCCGATTTATGGCATATGCTATCAGTACTCCGCAGCATAATAACACATTATCTCCTCTGTTTAGGGGTTCTGCATATTTGTATTAAACGGTGTTTGTGTGGAAATAAGCATGTCATTTTCTG</genome_strand>
        <mrna_strand>AAGGTCACCTCAGTGGCCATTCCAGCTGCTTTGGCTGCTTCTGCTTTGTTTATGATT..................................................................................GGGAGAGGGATCTACAACATGTCTCATGGCATAGGGAAGAAGGAATAAATAGCGGCTACTGCTCGACTATTGTTCCTATGGTGGCTGAATTTGAAACGACCTGTTTGTTCTTTTGTTGATTTTCAATTATCAGTAGCTAATACTAGTCACTTGGATGCTGATATTAAAACATGCCGATTTATGGCATATGCTATCAGTACTCCGCAGCATAATAACACATTATCTCCTCTGTTTAGGGGTTCTGCATATTTGTATTAAACGGTGTTTGTGTGGAAATAAGCATGTCATTTTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E718903" ref_strand="+" ref_description="SGN-E718903 [FC06AF11]">
      <seq>gatcgtcttcagctttctctccgtcgcttgccaagtgagttcatctgcaaaccctaggatgtcagaagaagcacctttctatcccagagaaaagcttgttgagaagcaaaagttttaccaaagcgtccacaagcacacatacttgaaaggtcgttttgacaaggtcacctcagtggccattccagctgctttggctgcttctgctttgtttatgattgggagagggatctacaacatgtctcatggcatagggaagaaggaataaatagcggctactgctcgactattgttcctatggtggctgaatttgaaacgacctgtttgttcttttgttgattttcaattatcagtagctaatactagtcacttggatgctgatattaaaacatgccgatttatggcatatgctatcagtactccgcagcataataacacattatctcctctgtttaggggttctgcatatttgtattaaacggtgtttgtgtggaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0099A03.1" temp_strand="-" temp_description="C06SLm0099A03.1  AC226730.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0099A03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="43386" stop="40368"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43087" g_stop="43031" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43030" i_stop="41189" i_length="1842">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41188" g_stop="41029" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="217" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41028" i_stop="40947" i_length="82">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40946" g_stop="40668" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="496" r_length="279" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="498" polyA_stop="548"/>
      <MATCH_line gen_id="C06SLm0099A03.1" gen_strand="-" ref_id="SGN-E718903" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>496</cumulative_length_of_scored_exons>
        <coverage percentage="0.905" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0099A03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E718903" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43087" e_stop="43031"/>
          <exon e_start="41188" e_stop="41029"/>
          <exon e_start="40946" e_stop="40668"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCGTCTTCAGCTTTCTCTCCGTCGCTTGCCAAGTGAGTTCATCTGCAAACCCTAGGTTTTCTGTTTTCTTAATCTCATTAGGTTTTATTCTGATCCGTTGATTCATAATCTGTTCCCTTTTTGTTTGTTTGTTGTGATTTTTTTAATCTTTAGTCTTGATTTTGCAGTTATTGATATATCATTTGTTGTTGAGTAGACGGGTTGGAATTTGTATTACTTTTTTGGATCCGTTTTTCAGTTTTGTATGTGTGTTTATAAGTAGATCTGTTTTTGTGATGGATTCATTTCATTGCTATACATGTTCTTTCGCTGTTGGTAAACTATGATAGTGTAGTTTGTTTTTATTTTTACTTGGATTGGATTCATCTTTGCGTAGTTTTGAAGCTCGCGTAGTTCATTAGGTCAGCTCCTAAAGGAGAGACTGTATTTGACTAGATGAAGATAATAATGACATGGGTTGACTCAGTTAGCGAGATGGCTCAATTCTGTAGTTCGAGTCATATTGGGGGTAATTAAGAACCGCAGTCGATCCATAACAGTGCGTTAGAAATATGATTATTAGGTTTCTCTTTTAGATTTTGTGGTTTCTCGTGTTATTATCTATAGGAGCATCGAGCTGTAAGACTAGCTCAATTCATTTTATTAACATGAAGATGAATCATAAGGTTGCTCAGGTTAATTATTCTTAGGGAATAATTGAACAATAATACAGTCTGGTGAAAGGGTTATGTCTTCGCTGTTAAGTCAAGCCATGCTTATTGCTCATTTGGTGCAAAAATCACTTAAATCACGGAGCTAATTGGCTAATTCATTAAGACATGGTTGTGGTTGGACTTCACATATCTGTAACCATATAACCTTTGATGTTAATATGGGTTACATTACCATCCTGTTTTTTTACCCCTGATTTAACTATGCCACCAACATATGTGATCAGAGCATTTGTGTCTTTTCTTCTTAATTCTCTTAATCAGGGGAAGTGATATTATACTTGTTCAATGAAAATTTGAAGGTGCAAGTCATGGCTGTCATATGATCAGTGTGTTGCTGTTTCTTTTTGAATAGTTAAATCTTAGAGTCTTGTTTTCCTTTACACTAGATCCATTGAACTTGATTCTACTAAAAACCATCTCTCATCTCAGCCTTACAGCTCGACACAGCATCTATAATCTCTTTTCATTCTTCTTCAAGAGTTACAGTCACCATTAGAACATACCAATATTCATTTGAGATAACAGAGAAAACTCCCACTTAAAATGGAGATCTCACGGGATGTTCCATCACCACCAGTTTATTTTGGTTCTTGGGGCAGATTTTTTTTTTTTTTTTGGGGGGGGGGGGGTGGAGTGTGCTGTCTGTTTTGGTTATGCCATCTTATTAGTTTTCATGCTGCTTTACAGAGATGAATATATCACCATCCCTTATGTTTTAAGGAAAAACTCTCATTTACTTGCTATAGATAGTCTTCAATTAAGTCTGTAACAACCACAGCACTCTGGCTCTGCTTCTTTGTTGTATTGGAGACCATAATTTGGTGGATACCTTTATGTACTTTATTCAAATGACTGGATGTTCTACCTGTGTGCCTTCAGTCATATGCATTTCATGCACTTTCAAATATTCTTTTATGCTGATGGACTCCTCTTTTTATATACCTGGTCCTGGACTACAAATTCAATTGCACCTCTTTTCTAGAATAAATCATTTTATGCAAAGCTTGTTTTAGTTATTTAAGCATCCATGAAAGATTCACTTCTCTCGTAGTGTGCCACAAATATGTTAGAAAAAGAAGGGAATGTTGCGGATATTAACCATCCTAACGTGGTGCAGGTTAAACTGATTGGTTATATTCATTTTATTACGAGATTGTAAATTTACAAGTTATTGAATAACACAGGATGTCAGAAGAAGCACCTTTCTATCCCAGAGAAAAGCTTGTTGAGAAGCAAAAGTTTTACCAAAGCGTCCACAAGCACACATACTTGAAAGGTCGTTTTGACAAGGTCACCTCAGTGGCCATTCCAGCTGCTTTGGCTGCTTCTGCTTTGTTTATGATTGTGAGTTTCTTCGAATTTTTTCTAGATTGCTTTATCTGATGTCCCGAATCAACTCTAATGGTATTTTTGGATTATATTTCAGGGGAGAGGGATCTACAACATGTCTCATGGCATAGGGAAGAAGGAATAAATAGCGGCTACTGCTCGACTATTGTTCCTATGGTGGCTGAATTTGAAACGACCTGTTTGTTCTTTTGTTGATTTTCAATTATCAGTAGCTAATACTAGTCACTTGGATGCTGATATTAAAACATGCCGATTTATGGCATATGCTATCAGTACTCCGCAGCATAATAACACATTATCTCCTCTGTTTAGGGGTTCTGCATATTTGTATTAAACGGTGTTTGTGTGGAAATAA</genome_strand>
        <mrna_strand>GATCGTCTTCAGCTTTCTCTCCGTCGCTTGCCAAGTGAGTTCATCTGCAAACCCTAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTCAGAAGAAGCACCTTTCTATCCCAGAGAAAAGCTTGTTGAGAAGCAAAAGTTTTACCAAAGCGTCCACAAGCACACATACTTGAAAGGTCGTTTTGACAAGGTCACCTCAGTGGCCATTCCAGCTGCTTTGGCTGCTTCTGCTTTGTTTATGATT..................................................................................GGGAGAGGGATCTACAACATGTCTCATGGCATAGGGAAGAAGGAATAAATAGCGGCTACTGCTCGACTATTGTTCCTATGGTGGCTGAATTTGAAACGACCTGTTTGTTCTTTTGTTGATTTTCAATTATCAGTAGCTAATACTAGTCACTTGGATGCTGATATTAAAACATGCCGATTTATGGCATATGCTATCAGTACTCCGCAGCATAATAACACATTATCTCCTCTGTTTAGGGGTTCTGCATATTTGTATTAAACGGTGTTTGTGTGGAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E243048" ref_strand="+" ref_description="SGN-E243048 [cLEF-1-B13]">
      <seq>tttctctccgtcgcttgccaagatgtcagaagaagcacctttctatcccagagaaaagcttgttgagaagcaaaagttttaccaaagcgtccacaagcacacatacttgaaaggtcgttttgacaaggtcacctcagtggccattccagctgctttggctgcttctgctttgtttatgattgggagagggatctacaacatgtctcatggcatagggaagaaggaataaatagcggctactgctcgactattgttcctatggtggctgaatttgaaacgacctgtttgttcttttgttgattttcaattatcagtagctaatactagtcacttggatgctgatattaaaacatgccgatttatggcatatgctatcagtactccgcagcataataacacattatctcctctgtttaggggttctgcatatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0099A03.1" temp_strand="-" temp_description="C06SLm0099A03.1  AC226730.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0099A03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="43374" stop="40395"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43074" g_stop="43054" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43053" i_stop="41189" i_length="1865">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41188" g_stop="41029" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="181" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41028" i_stop="40947" i_length="82">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40946" g_stop="40695" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="433" r_length="252" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0099A03.1" gen_strand="-" ref_id="SGN-E243048" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0099A03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E243048" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43074" e_stop="43054"/>
          <exon e_start="41188" e_stop="41029"/>
          <exon e_start="40946" e_stop="40695"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTCTCCGTCGCTTGCCAAGTGAGTTCATCTGCAAACCCTAGGTTTTCTGTTTTCTTAATCTCATTAGGTTTTATTCTGATCCGTTGATTCATAATCTGTTCCCTTTTTGTTTGTTTGTTGTGATTTTTTTAATCTTTAGTCTTGATTTTGCAGTTATTGATATATCATTTGTTGTTGAGTAGACGGGTTGGAATTTGTATTACTTTTTTGGATCCGTTTTTCAGTTTTGTATGTGTGTTTATAAGTAGATCTGTTTTTGTGATGGATTCATTTCATTGCTATACATGTTCTTTCGCTGTTGGTAAACTATGATAGTGTAGTTTGTTTTTATTTTTACTTGGATTGGATTCATCTTTGCGTAGTTTTGAAGCTCGCGTAGTTCATTAGGTCAGCTCCTAAAGGAGAGACTGTATTTGACTAGATGAAGATAATAATGACATGGGTTGACTCAGTTAGCGAGATGGCTCAATTCTGTAGTTCGAGTCATATTGGGGGTAATTAAGAACCGCAGTCGATCCATAACAGTGCGTTAGAAATATGATTATTAGGTTTCTCTTTTAGATTTTGTGGTTTCTCGTGTTATTATCTATAGGAGCATCGAGCTGTAAGACTAGCTCAATTCATTTTATTAACATGAAGATGAATCATAAGGTTGCTCAGGTTAATTATTCTTAGGGAATAATTGAACAATAATACAGTCTGGTGAAAGGGTTATGTCTTCGCTGTTAAGTCAAGCCATGCTTATTGCTCATTTGGTGCAAAAATCACTTAAATCACGGAGCTAATTGGCTAATTCATTAAGACATGGTTGTGGTTGGACTTCACATATCTGTAACCATATAACCTTTGATGTTAATATGGGTTACATTACCATCCTGTTTTTTTACCCCTGATTTAACTATGCCACCAACATATGTGATCAGAGCATTTGTGTCTTTTCTTCTTAATTCTCTTAATCAGGGGAAGTGATATTATACTTGTTCAATGAAAATTTGAAGGTGCAAGTCATGGCTGTCATATGATCAGTGTGTTGCTGTTTCTTTTTGAATAGTTAAATCTTAGAGTCTTGTTTTCCTTTACACTAGATCCATTGAACTTGATTCTACTAAAAACCATCTCTCATCTCAGCCTTACAGCTCGACACAGCATCTATAATCTCTTTTCATTCTTCTTCAAGAGTTACAGTCACCATTAGAACATACCAATATTCATTTGAGATAACAGAGAAAACTCCCACTTAAAATGGAGATCTCACGGGATGTTCCATCACCACCAGTTTATTTTGGTTCTTGGGGCAGATTTTTTTTTTTTTTTTGGGGGGGGGGGGGTGGAGTGTGCTGTCTGTTTTGGTTATGCCATCTTATTAGTTTTCATGCTGCTTTACAGAGATGAATATATCACCATCCCTTATGTTTTAAGGAAAAACTCTCATTTACTTGCTATAGATAGTCTTCAATTAAGTCTGTAACAACCACAGCACTCTGGCTCTGCTTCTTTGTTGTATTGGAGACCATAATTTGGTGGATACCTTTATGTACTTTATTCAAATGACTGGATGTTCTACCTGTGTGCCTTCAGTCATATGCATTTCATGCACTTTCAAATATTCTTTTATGCTGATGGACTCCTCTTTTTATATACCTGGTCCTGGACTACAAATTCAATTGCACCTCTTTTCTAGAATAAATCATTTTATGCAAAGCTTGTTTTAGTTATTTAAGCATCCATGAAAGATTCACTTCTCTCGTAGTGTGCCACAAATATGTTAGAAAAAGAAGGGAATGTTGCGGATATTAACCATCCTAACGTGGTGCAGGTTAAACTGATTGGTTATATTCATTTTATTACGAGATTGTAAATTTACAAGTTATTGAATAACACAGGATGTCAGAAGAAGCACCTTTCTATCCCAGAGAAAAGCTTGTTGAGAAGCAAAAGTTTTACCAAAGCGTCCACAAGCACACATACTTGAAAGGTCGTTTTGACAAGGTCACCTCAGTGGCCATTCCAGCTGCTTTGGCTGCTTCTGCTTTGTTTATGATTGTGAGTTTCTTCGAATTTTTTCTAGATTGCTTTATCTGATGTCCCGAATCAACTCTAATGGTATTTTTGGATTATATTTCAGGGGAGAGGGATCTACAACATGTCTCATGGCATAGGGAAGAAGGAATAAATAGCGGCTACTGCTCGACTATTGTTCCTATGGTGGCTGAATTTGAAACGACCTGTTTGTTCTTTTGTTGATTTTCAATTATCAGTAGCTAATACTAGTCACTTGGATGCTGATATTAAAACATGCCGATTTATGGCATATGCTATCAGTACTCCGCAGCATAATAACACATTATCTCCTCTGTTTAGGGGTTCTGCATATTTG</genome_strand>
        <mrna_strand>TTTCTCTCCGTCGCTTGCCAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTCAGAAGAAGCACCTTTCTATCCCAGAGAAAAGCTTGTTGAGAAGCAAAAGTTTTACCAAAGCGTCCACAAGCACACATACTTGAAAGGTCGTTTTGACAAGGTCACCTCAGTGGCCATTCCAGCTGCTTTGGCTGCTTCTGCTTTGTTTATGATT..................................................................................GGGAGAGGGATCTACAACATGTCTCATGGCATAGGGAAGAAGGAATAAATAGCGGCTACTGCTCGACTATTGTTCCTATGGTGGCTGAATTTGAAACGACCTGTTTGTTCTTTTGTTGATTTTCAATTATCAGTAGCTAATACTAGTCACTTGGATGCTGATATTAAAACATGCCGATTTATGGCATATGCTATCAGTACTCCGCAGCATAATAACACATTATCTCCTCTGTTTAGGGGTTCTGCATATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E717135" ref_strand="+" ref_description="SGN-E717135 [FB19AG04]">
      <seq>agaaaagctctgttgagacgctaaagttttaccaaaacgaccacaagcacacatacttaaaaggtcgttttgacaaggacacctcagtggccattccagctgctttggctgcttctgctttgtttatgattgggagagggatctacaacatgtctcatggcatagggaagaaggaataaatagcggctactgctcgactattgttcctatggtggctgaatttgaaacgacctgtttgttcttttgttgattttcaattatcagtagctaatactagtcacttggatgctgatattaaaacatgccgatttatggcatatgctatcagtactccgcagcataataaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0099A03.1" temp_strand="-" temp_description="C06SLm0099A03.1  AC226730.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0099A03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="41458" stop="40430"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41158" g_stop="41029" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="131" r_length="131" r_score="0.938"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41028" i_stop="40947" i_length="82">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40946" g_stop="40730" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="348" r_length="217" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0099A03.1" gen_strand="-" ref_id="SGN-E717135" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>347</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0099A03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E717135" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41158" e_stop="41029"/>
          <exon e_start="40946" e_stop="40730"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAAGCT-TGTTGAGAAGCAAAAGTTTTACCAAAGCGTCCACAAGCACACATACTTGAAAGGTCGTTTTGACAAGGTCACCTCAGTGGCCATTCCAGCTGCTTTGGCTGCTTCTGCTTTGTTTATGATTGTGAGTTTCTTCGAATTTTTTCTAGATTGCTTTATCTGATGTCCCGAATCAACTCTAATGGTATTTTTGGATTATATTTCAGGGGAGAGGGATCTACAACATGTCTCATGGCATAGGGAAGAAGGAATAAATAGCGGCTACTGCTCGACTATTGTTCCTATGGTGGCTGAATTTGAAACGACCTGTTTGTTCTTTTGTTGATTTTCAATTATCAGTAGCTAATACTAGTCACTTGGATGCTGATATTAAAACATGCCGATTTATGGCATATGCTATCAGTACTCCGCAGCATAATAACA</genome_strand>
        <mrna_strand>AGAAAAGCTCTGTTGAGACGCTAAAGTTTTACCAAAACGACCACAAGCACACATACTTAAAAGGTCGTTTTGACAAGGACACCTCAGTGGCCATTCCAGCTGCTTTGGCTGCTTCTGCTTTGTTTATGATT..................................................................................GGGAGAGGGATCTACAACATGTCTCATGGCATAGGGAAGAAGGAATAAATAGCGGCTACTGCTCGACTATTGTTCCTATGGTGGCTGAATTTGAAACGACCTGTTTGTTCTTTTGTTGATTTTCAATTATCAGTAGCTAATACTAGTCACTTGGATGCTGATATTAAAACATGCCGATTTATGGCATATGCTATCAGTACTCCGCAGCATAATAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E293814" ref_strand="+" ref_description="SGN-E293814 [cLET-37-K6]">
      <seq>gctcatcgtcttcagctttctctccgtcgcttgccaagatgtcagaagaagcacctttctatcccagagaaaagcttgttgagaagcaaaagttttaccaaagcgtccacaagcacacatacttgaaaggtcgttttgacaaggtcacctcagtggccattcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0099A03.1" temp_strand="-" temp_description="C06SLm0099A03.1  AC226730.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0099A03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="43390" stop="40762"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43090" g_stop="43054" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43053" i_stop="41189" i_length="1865">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41188" g_stop="41062" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="164" r_length="127" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0099A03.1" gen_strand="-" ref_id="SGN-E293814" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>164</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0099A03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E293814" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43090" e_stop="43054"/>
          <exon e_start="41188" e_stop="41062"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTCATCGTCTTCAGCTTTCTCTCCGTCGCTTGCCAAGTGAGTTCATCTGCAAACCCTAGGTTTTCTGTTTTCTTAATCTCATTAGGTTTTATTCTGATCCGTTGATTCATAATCTGTTCCCTTTTTGTTTGTTTGTTGTGATTTTTTTAATCTTTAGTCTTGATTTTGCAGTTATTGATATATCATTTGTTGTTGAGTAGACGGGTTGGAATTTGTATTACTTTTTTGGATCCGTTTTTCAGTTTTGTATGTGTGTTTATAAGTAGATCTGTTTTTGTGATGGATTCATTTCATTGCTATACATGTTCTTTCGCTGTTGGTAAACTATGATAGTGTAGTTTGTTTTTATTTTTACTTGGATTGGATTCATCTTTGCGTAGTTTTGAAGCTCGCGTAGTTCATTAGGTCAGCTCCTAAAGGAGAGACTGTATTTGACTAGATGAAGATAATAATGACATGGGTTGACTCAGTTAGCGAGATGGCTCAATTCTGTAGTTCGAGTCATATTGGGGGTAATTAAGAACCGCAGTCGATCCATAACAGTGCGTTAGAAATATGATTATTAGGTTTCTCTTTTAGATTTTGTGGTTTCTCGTGTTATTATCTATAGGAGCATCGAGCTGTAAGACTAGCTCAATTCATTTTATTAACATGAAGATGAATCATAAGGTTGCTCAGGTTAATTATTCTTAGGGAATAATTGAACAATAATACAGTCTGGTGAAAGGGTTATGTCTTCGCTGTTAAGTCAAGCCATGCTTATTGCTCATTTGGTGCAAAAATCACTTAAATCACGGAGCTAATTGGCTAATTCATTAAGACATGGTTGTGGTTGGACTTCACATATCTGTAACCATATAACCTTTGATGTTAATATGGGTTACATTACCATCCTGTTTTTTTACCCCTGATTTAACTATGCCACCAACATATGTGATCAGAGCATTTGTGTCTTTTCTTCTTAATTCTCTTAATCAGGGGAAGTGATATTATACTTGTTCAATGAAAATTTGAAGGTGCAAGTCATGGCTGTCATATGATCAGTGTGTTGCTGTTTCTTTTTGAATAGTTAAATCTTAGAGTCTTGTTTTCCTTTACACTAGATCCATTGAACTTGATTCTACTAAAAACCATCTCTCATCTCAGCCTTACAGCTCGACACAGCATCTATAATCTCTTTTCATTCTTCTTCAAGAGTTACAGTCACCATTAGAACATACCAATATTCATTTGAGATAACAGAGAAAACTCCCACTTAAAATGGAGATCTCACGGGATGTTCCATCACCACCAGTTTATTTTGGTTCTTGGGGCAGATTTTTTTTTTTTTTTTGGGGGGGGGGGGGTGGAGTGTGCTGTCTGTTTTGGTTATGCCATCTTATTAGTTTTCATGCTGCTTTACAGAGATGAATATATCACCATCCCTTATGTTTTAAGGAAAAACTCTCATTTACTTGCTATAGATAGTCTTCAATTAAGTCTGTAACAACCACAGCACTCTGGCTCTGCTTCTTTGTTGTATTGGAGACCATAATTTGGTGGATACCTTTATGTACTTTATTCAAATGACTGGATGTTCTACCTGTGTGCCTTCAGTCATATGCATTTCATGCACTTTCAAATATTCTTTTATGCTGATGGACTCCTCTTTTTATATACCTGGTCCTGGACTACAAATTCAATTGCACCTCTTTTCTAGAATAAATCATTTTATGCAAAGCTTGTTTTAGTTATTTAAGCATCCATGAAAGATTCACTTCTCTCGTAGTGTGCCACAAATATGTTAGAAAAAGAAGGGAATGTTGCGGATATTAACCATCCTAACGTGGTGCAGGTTAAACTGATTGGTTATATTCATTTTATTACGAGATTGTAAATTTACAAGTTATTGAATAACACAGGATGTCAGAAGAAGCACCTTTCTATCCCAGAGAAAAGCTTGTTGAGAAGCAAAAGTTTTACCAAAGCGTCCACAAGCACACATACTTGAAAGGTCGTTTTGACAAGGTCACCTCAGTGGCCATTCCA</genome_strand>
        <mrna_strand>GCTCATCGTCTTCAGCTTTCTCTCCGTCGCTTGCCAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTCAGAAGAAGCACCTTTCTATCCCAGAGAAAAGCTTGTTGAGAAGCAAAAGTTTTACCAAAGCGTCCACAAGCACACATACTTGAAAGGTCGTTTTGACAAGGTCACCTCAGTGGCCATTCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E541927" ref_strand="+" ref_description="SGN-E541927 [TUS-62-P13]">
      <seq>gaagataataatgacatgggttgactcagttagcgagatggctcaattctgtagttcgagtcatattgggggtaattaagaaccgcagtcgatccataacagtgcgttagaaatatgattattaggtttctcttttagattttgtggtttctcgtgttattatctataggagcatcgagctgtaagactagctcaattcattttattaacatgaagatgaatcataaggttgctcaggttaattattcttagggaataattgaacaataatacagtctggtgaaagggttatgtcttcgctgttaagtcaagccatgcttattgctcatttggtgcaaaaatcacttaaatcacggagctaattggctaattcattaagacatggttgtggttggacttcacatatctgtaaccatataacctttgatgttaatatgggttacattaccatcctgtttttttacccctgatttaactatgccaccaacatatgtgatcagagcatttgtgtcttttcttcttaattctcttaatcaggggaagtgatattatacttgttcaatgaaaatttgaaggtgcaagtcatggctgtcatatgatcagtgtgttgctgtttctttttgaatagttaaatcttagagtcttgttttcctttacactagatccattgaactttgatctactaaaaaccatctctcatctcagccttacagctcgacacagcatctantatctcttttcattcntnnctcagagttacagtcaccattagaacataccaatatttcatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0099A03.1" temp_strand="-" temp_description="C06SLm0099A03.1  AC226730.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0099A03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="42948" stop="41557"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42648" g_stop="41857" g_length="792"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="793" r_length="793" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0099A03.1" gen_strand="-" ref_id="SGN-E541927" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>792</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0099A03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E541927" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42648" e_stop="41857"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGATAATAATGACATGGGTTGACTCAGTTAGCGAGATGGCTCAATTCTGTAGTTCGAGTCATATTGGGGGTAATTAAGAACCGCAGTCGATCCATAACAGTGCGTTAGAAATATGATTATTAGGTTTCTCTTTTAGATTTTGTGGTTTCTCGTGTTATTATCTATAGGAGCATCGAGCTGTAAGACTAGCTCAATTCATTTTATTAACATGAAGATGAATCATAAGGTTGCTCAGGTTAATTATTCTTAGGGAATAATTGAACAATAATACAGTCTGGTGAAAGGGTTATGTCTTCGCTGTTAAGTCAAGCCATGCTTATTGCTCATTTGGTGCAAAAATCACTTAAATCACGGAGCTAATTGGCTAATTCATTAAGACATGGTTGTGGTTGGACTTCACATATCTGTAACCATATAACCTTTGATGTTAATATGGGTTACATTACCATCCTGTTTTTTTACCCCTGATTTAACTATGCCACCAACATATGTGATCAGAGCATTTGTGTCTTTTCTTCTTAATTCTCTTAATCAGGGGAAGTGATATTATACTTGTTCAATGAAAATTTGAAGGTGCAAGTCATGGCTGTCATATGATCAGTGTGTTGCTGTTTCTTTTTGAATAGTTAAATCTTAGAGTCTTGTTTTCCTTTACACTAGATCCATTGAACTTGATTCTACTAAAAACCATCTCTCATCTCAGCCTTACAGCTCGACACAGCATCTATAATCTCTTTTCATTCTTCTTCAAGAGTTACAGTCACCATTAGAACATACCAATA-TTCATTTG</genome_strand>
        <mrna_strand>GAAGATAATAATGACATGGGTTGACTCAGTTAGCGAGATGGCTCAATTCTGTAGTTCGAGTCATATTGGGGGTAATTAAGAACCGCAGTCGATCCATAACAGTGCGTTAGAAATATGATTATTAGGTTTCTCTTTTAGATTTTGTGGTTTCTCGTGTTATTATCTATAGGAGCATCGAGCTGTAAGACTAGCTCAATTCATTTTATTAACATGAAGATGAATCATAAGGTTGCTCAGGTTAATTATTCTTAGGGAATAATTGAACAATAATACAGTCTGGTGAAAGGGTTATGTCTTCGCTGTTAAGTCAAGCCATGCTTATTGCTCATTTGGTGCAAAAATCACTTAAATCACGGAGCTAATTGGCTAATTCATTAAGACATGGTTGTGGTTGGACTTCACATATCTGTAACCATATAACCTTTGATGTTAATATGGGTTACATTACCATCCTGTTTTTTTACCCCTGATTTAACTATGCCACCAACATATGTGATCAGAGCATTTGTGTCTTTTCTTCTTAATTCTCTTAATCAGGGGAAGTGATATTATACTTGTTCAATGAAAATTTGAAGGTGCAAGTCATGGCTGTCATATGATCAGTGTGTTGCTGTTTCTTTTTGAATAGTTAAATCTTAGAGTCTTGTTTTCCTTTACACTAGATCCATTGAACTTTGATCTACTAAAAACCATCTCTCATCTCAGCCTTACAGCTCGACACAGCATCTANTATCTCTTTTCATTCNTNNCTCAGAGTTACAGTCACCATTAGAACATACCAATATTTCATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E300890" ref_strand="+" ref_description="SGN-E300890 [cLEW-8-F12]">
      <seq>aagataataatgacatgggttgactcagctagcgagatggctcaattctgtagttcgagtcatattgggggtaattaagaaccgcagtcgatccataacagtgcgttcgaaatatgattattaggtttctcttttagattttgtggtttctcgtgttattatctataggagcatcgagctgtaagactagctcaattcattttattaacatgaagatgaatcataaggttgctcaggttaattattcttagggaataattgaacaataatacagtctggtgaaagggttatgtcttcgctgttaagtcaagccatgcttattgctcatttggtgcaaaaatcacttaaatcacggagctaattggctaattcattaagacatggctgtggttggacttcacatatctgtaaccatataac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0099A03.1" temp_strand="-" temp_description="C06SLm0099A03.1  AC226730.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0099A03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="42947" stop="41928"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42647" g_stop="42228" g_length="420"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="420" r_length="420" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0099A03.1" gen_strand="-" ref_id="SGN-E300890" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>420</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0099A03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E300890" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42647" e_stop="42228"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGATAATAATGACATGGGTTGACTCAGTTAGCGAGATGGCTCAATTCTGTAGTTCGAGTCATATTGGGGGTAATTAAGAACCGCAGTCGATCCATAACAGTGCGTTAGAAATATGATTATTAGGTTTCTCTTTTAGATTTTGTGGTTTCTCGTGTTATTATCTATAGGAGCATCGAGCTGTAAGACTAGCTCAATTCATTTTATTAACATGAAGATGAATCATAAGGTTGCTCAGGTTAATTATTCTTAGGGAATAATTGAACAATAATACAGTCTGGTGAAAGGGTTATGTCTTCGCTGTTAAGTCAAGCCATGCTTATTGCTCATTTGGTGCAAAAATCACTTAAATCACGGAGCTAATTGGCTAATTCATTAAGACATGGTTGTGGTTGGACTTCACATATCTGTAACCATATAAC</genome_strand>
        <mrna_strand>AAGATAATAATGACATGGGTTGACTCAGCTAGCGAGATGGCTCAATTCTGTAGTTCGAGTCATATTGGGGGTAATTAAGAACCGCAGTCGATCCATAACAGTGCGTTCGAAATATGATTATTAGGTTTCTCTTTTAGATTTTGTGGTTTCTCGTGTTATTATCTATAGGAGCATCGAGCTGTAAGACTAGCTCAATTCATTTTATTAACATGAAGATGAATCATAAGGTTGCTCAGGTTAATTATTCTTAGGGAATAATTGAACAATAATACAGTCTGGTGAAAGGGTTATGTCTTCGCTGTTAAGTCAAGCCATGCTTATTGCTCATTTGGTGCAAAAATCACTTAAATCACGGAGCTAATTGGCTAATTCATTAAGACATGGCTGTGGTTGGACTTCACATATCTGTAACCATATAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E261310" ref_strand="+" ref_description="SGN-E261310 [cLEG-68-F10]">
      <seq>ggacatgttccttgctgaaaatggctataaaaggaagtcaaattttgattttttaaacactgaaaatttttctttctctgcatttatttttctctcaaataaaatcaaagtgtcgatcgactgagtctgtgtgacttgttgttgttcttaagttcgttgaagttaaagaagtttgaggtaccgctatttctttaacaggtttaatccgttttatcttgagagaaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0099A03.1" temp_strand="+" temp_description="C06SLm0099A03.1  AC226730.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0099A03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="45535" stop="46366"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45834" g_stop="46066" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="227" r_length="227" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0099A03.1" gen_strand="+" ref_id="SGN-E261310" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>233</cumulative_length_of_scored_exons>
        <coverage percentage="1.026" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0099A03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E261310" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45834" e_stop="46066"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACATGTTCCTTGCTGAAAATGGCTACAAAAGGAAGTCAATTTTTGATTTTTCAAACACTGAAAATTTTTCTTTCTCTGCATTTATTTTTCTCTCAAATAAAAAAAAAATCAAAGTGTCGATCGACTGAGTCTGTATGACTTGTTGCTGTTCTTAAGTTCGTTGAAGTTAAAAAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGGGAGAAATT</genome_strand>
        <mrna_strand>GGACATGTTCCTTGCTGAAAATGGCTATAAAAGGAAGTCAAATTTTGATTTTTTAAACACTGAAAATTTTTCTTTCTCTGCATTTATTTTTCTCTCAAAT------AAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGTTGTTCTTAAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGAGAGAAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E262800" ref_strand="+" ref_description="SGN-E262800 [cLEG-63-P6]">
      <seq>cttgctgaaaatggctataaaaggaagtcaaattttgattttttaaacactgaaaatttttctttctctgcatttatttttctctcaaataaaatcaaagtgtcgatcgactgagtctgtgtgacttgttgttgttcttaagttcgttgaagttaaagaagtttgaggtaccgctatttctttaacaggtttaatccgttttatcttgagagaaattaatccataaccttgggtacagtgagggaattaaatttcttaaggacacatagtagtttctgtggactcggattaattcttgtattctatattattttctgcttcatcttatttctgtttctgtttattaactttataaataaaagttattataagagtaacaatcttaagaaaatttata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0099A03.1" temp_strand="+" temp_description="C06SLm0099A03.1  AC226730.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0099A03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="45544" stop="46527"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45844" g_stop="46212" g_length="369"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="364" r_length="364" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0099A03.1" gen_strand="+" ref_id="SGN-E262800" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>369</cumulative_length_of_scored_exons>
        <coverage percentage="0.929" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0099A03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E262800" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45844" e_stop="46212"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGCTGAAAATGGCTACAAAAGGAAGTCAATTTTTGATTTTTCAAACACTGAAAATTTTTCTTTCTCTGCATTTATTTTTCTCTCAAATAAAAAAAAAATCAAAGTGTCGATCGACTGAGTCTGTATGACTTGTTGCTGTTCTTAAGTTCGTTGAAGTTAAAAAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGGGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGAATTAAATTTCTTAAGGACACACAGTAGTTTCTGTGGACTCGGAATAATTCTTGTATTTTATATT-TTTTCTGTTTCATCTTATTTGTGTTTCTGTTTATTAACCTTATAAATACAGGTT</genome_strand>
        <mrna_strand>CTTGCTGAAAATGGCTATAAAAGGAAGTCAAATTTTGATTTTTTAAACACTGAAAATTTTTCTTTCTCTGCATTTATTTTTCTCTCAAAT------AAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGTTGTTCTTAAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGAGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGAATTAAATTTCTTAAGGACACATAGTAGTTTCTGTGGACTCGGATTAATTCTTGTATTCTATATTATTTTCTGCTTCATCTTATTTCTGTTTCTGTTTATTAACTTTATAAATAAAAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E258205" ref_strand="+" ref_description="SGN-E258205 [cLEG-49-B23]">
      <seq>aatttttctttctctgcatttatttttctctcaaataaaatcaaagtgtcgatcgactgagtctgtgtgacttgttgttgttcttaagttcgttgaagttaaagaagtttgaggtaccgctatttctttaacaggtttaatccgttttatcttgagagaaattaatccataaccttgggtacagtgagggaattaaatttcttaaggacacatagtagtttctgtggactcggattaattcttgtattctatattattttctgcttcatcttatttctggttctgtttattaactttataaataaaaggtattataagagtaacaatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0099A03.1" temp_strand="+" temp_description="C06SLm0099A03.1  AC226730.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0099A03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="45598" stop="46527"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45898" g_stop="46227" g_length="330"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="325" r_length="325" r_score="0.921"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0099A03.1" gen_strand="+" ref_id="SGN-E258205" ref_strand="+">
        <total_alignment_score>0.921</total_alignment_score>
        <cumulative_length_of_scored_exons>330</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0099A03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E258205" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45898" e_stop="46227"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTTTCTTTCTCTGCATTTATTTTTCTCTCAAATAAAAAAAAAATCAAAGTGTCGATCGACTGAGTCTGTATGACTTGTTGCTGTTCTTAAGTTCGTTGAAGTTAAAAAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGGGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGAATTAAATTTCTTAAGGACACACAGTAGTTTCTGTGGACTCGGAATAATTCTTGTATTTTATATT-TTTTCTGTTTCATCTTATTTGTGTTTCTGTTTATTAACCTTATAAATACAGGTTATAGAAAGAATAACA</genome_strand>
        <mrna_strand>AATTTTTCTTTCTCTGCATTTATTTTTCTCTCAAAT------AAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGTTGTTCTTAAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGAGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGAATTAAATTTCTTAAGGACACATAGTAGTTTCTGTGGACTCGGATTAATTCTTGTATTCTATATTATTTTCTGCTTCATCTTATTTCTGGTTCTGTTTATTAACTTTATAAATAAAAGGTATTATAAGAGTAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E326394" ref_strand="+" ref_description="SGN-E326394 [cTOC-14-K1]">
      <seq>tttccccttcagatcccttttcttcttcttgtaaccaaaaaaagaaaatgagagattttgcttcttgtttcaatgaatatgctgttcaagtttctgataatacttcttgttctagttacctcaaactctgcttgtatccctccttctataattccttcagtacaaaacactgtgaattgtttgtaccaaagtcaatttatccaataaaaaacatgtcttgatcacaatttcatggtgcaaaacaaatgtaacacaaggcttgagtgtaccacctttggtgatgatcatccaaatgtattcaaactcaacacgaatacccgtctttttaggaagaagaaggggagtaaatcaatggatttggatcattttaaggttgaaatcatttgggatttgtgtggagctaggtacttaagtagtggtcctgaaccaattgatggatattatgtactgatcatagttgattcacaacttggagttattcttggtgatatggctgaagaagcatcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0099A03.1" temp_strand="-" temp_description="C06SLm0099A03.1  AC226730.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0099A03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="48286" stop="47183"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47986" g_stop="47483" g_length="504"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="508" r_length="508" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0099A03.1" gen_strand="-" ref_id="SGN-E326394" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>504</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0099A03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E326394" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47986" e_stop="47483"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCCCCTTCAGATCCCTTTTCTTCTTCTTGTAACCAAAAAAAGAAAATGAGAGATTTTGCTTCTTGTTTCAATGAATATGCTGTTCAAGTTTCTGATAATACTTCTTGTTCTAGTTA-CTCAAACTCTGCTTGTATCCCTCCTTCTATAATTCCTTCAGTACAAAACACTGTGAATTGTTTGTA-CAAAGTCAATTTATCCAATAAAAAACATGTCTTGATCACAATTTCATGGTGCAAAACAAATGTAACACAAGGCTTGAGTGTA-CA-CTTTGGTGATGATCATCCAAATGTATTCAAACTCAACACGAATACGCGTCTTTTTAGGAAGAAGAAGGGGAGTAAATCAATGGATTTGGATCATTTTAAGGTTGAAATCATTTGGGATTTGTGTGGAGCTAGGTACTTAAGTAGTGGTCCTGAACCAATTGATGGATATTATGTACTGATCATAGTTGATTCACAACTTGGAGTTATTCTTGGTGATATGGCTGAAGAAGCATCAT</genome_strand>
        <mrna_strand>TTTCCCCTTCAGATCCCTTTTCTTCTTCTTGTAACCAAAAAAAGAAAATGAGAGATTTTGCTTCTTGTTTCAATGAATATGCTGTTCAAGTTTCTGATAATACTTCTTGTTCTAGTTACCTCAAACTCTGCTTGTATCCCTCCTTCTATAATTCCTTCAGTACAAAACACTGTGAATTGTTTGTACCAAAGTCAATTTATCCAATAAAAAACATGTCTTGATCACAATTTCATGGTGCAAAACAAATGTAACACAAGGCTTGAGTGTACCACCTTTGGTGATGATCATCCAAATGTATTCAAACTCAACACGAATACCCGTCTTTTTAGGAAGAAGAAGGGGAGTAAATCAATGGATTTGGATCATTTTAAGGTTGAAATCATTTGGGATTTGTGTGGAGCTAGGTACTTAAGTAGTGGTCCTGAACCAATTGATGGATATTATGTACTGATCATAGTTGATTCACAACTTGGAGTTATTCTTGGTGATATGGCTGAAGAAGCATCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E543115" ref_strand="+" ref_description="SGN-E543115 [TUS-64-M6]">
      <seq>ctggattctcttcgagaatgtgatggctttccaacgaaccaaggctacatttatcggcttgctagaagcaaaaagagctaatgaatgggttgtcacggagaaactaggtgatgctctcaagaacaaagaaaaaacaaaacaaaccaaaaaaccccgaggatctctatttggagacaggattcttccacaagaattgggattcgcagttttccttttcttttgtggatgctatgatgtcctctatgggaaaagccagtactttctttacatcttcctccaagtcatcactttcacaattgctggatttggctacattggcaccatcgtcccctcgtaatagcagaaacttcaaaaaaaaaaaaatcgtcctgtattgactcgtgtacactaaaataaatttttgagtgctttcgtgcaaccattttcaaaggatgccaaactcaaaatctccggataattttcttagagatactgtgttggtaaggaggagcgaagagcaaagagatatctatattaagcccagaacacagaagaagacgataaaacagatgaattagtgtagatagattgtatttttcttctattgaagctctttagttgtgtgacattgtaattctatagcttgcaagtcatttttctttctggttctgttctctttgtctctgtctttcagaaggacaaaagctcaggatattgcgaaaaggacaaaanctatatcaaatttttgtcattctagcttcaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0099A03.1" temp_strand="-" temp_description="C06SLm0099A03.1  AC226730.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0099A03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="51838" stop="50382"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51538" g_stop="51362" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51361" i_stop="51249" i_length="113">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.819" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51248" g_stop="50683" g_length="566"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="741" r_length="564" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0099A03.1" gen_strand="-" ref_id="SGN-E543115" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>743</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0099A03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E543115" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51538" e_stop="51362"/>
          <exon e_start="51248" e_stop="50683"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGATTCTCTTCGAGAATGTGATGGCTTTCCAACGAACCAAGGCTACATTTATCGGCTTGCTAGAAGCAAAAAGAGCTAATGAATGGGTTGTCACGGAGAAACTAGGTGATGCTCTCAAGAACAAAGAAAAAACAAAACAAACCAAAAAACCCCGAGGATCTCTATTTGGAGACAGGTGAGAAACTCTCCTGAATGAAGCTTTTGTTTTCATGTTCTTGATATCATTGAACTATTAGAATATTGCATCAGTTTGTTAACCATGCATTATCGGTTGGTCTAATCATACAGGATTCTTCCACAAGAATTGGGATTCGCAGTTTTCCTTTTCTTTTGTGGATGCTATGATGTCCTCTATGGGAAAAGCCAGTACTTTCTTTACATCTTCCTCCAAGTCATCACTTTCACAATTGCTGGATTTGGCTACATTGGCACCATCGTCCCCTCGTAATAGCAGAAACTTCAAAAAAAAAAAAATCGTCCTGTATTGACTCGTGTACACTAAAATAAATTTTTGAGTGCTTTCGTGCAACCATTTTCAAAGGATGCCAAACTCAAAATCTCCGGATAATTTTCTTAGAGATACTGTGTTGGTAAGGAGGAGCGAAGAGCAAAGAGATATCTATATTAAGCCCAGAACACAGAAGAAGACGATAAAACAGATGAATTAGTGTAGATAGATTGTATTTTTCTTCTATTGAAGCTCTTTAGTTGTGTGACATTGTAATTCTATAGCTTGCAAGTCATTTTTCTTTCTGTTCTTGTTCTCTTTGTCTCTGTCTTTCAAGAGGGACAAAAGCTCAGGATATTGCGAAAAGGACAAAACTTATAATCAAATTTTTGTCATTCTAGCTTCA</genome_strand>
        <mrna_strand>CTGGATTCTCTTCGAGAATGTGATGGCTTTCCAACGAACCAAGGCTACATTTATCGGCTTGCTAGAAGCAAAAAGAGCTAATGAATGGGTTGTCACGGAGAAACTAGGTGATGCTCTCAAGAACAAAGAAAAAACAAAACAAACCAAAAAACCCCGAGGATCTCTATTTGGAGACAG.................................................................................................................GATTCTTCCACAAGAATTGGGATTCGCAGTTTTCCTTTTCTTTTGTGGATGCTATGATGTCCTCTATGGGAAAAGCCAGTACTTTCTTTACATCTTCCTCCAAGTCATCACTTTCACAATTGCTGGATTTGGCTACATTGGCACCATCGTCCCCTCGTAATAGCAGAAACTTCAAAAAAAAAAAAATCGTCCTGTATTGACTCGTGTACACTAAAATAAATTTTTGAGTGCTTTCGTGCAACCATTTTCAAAGGATGCCAAACTCAAAATCTCCGGATAATTTTCTTAGAGATACTGTGTTGGTAAGGAGGAGCGAAGAGCAAAGAGATATCTATATTAAGCCCAGAACACAGAAGAAGACGATAAAACAGATGAATTAGTGTAGATAGATTGTATTTTTCTTCTATTGAAGCTCTTTAGTTGTGTGACATTGTAATTCTATAGCTTGCAAGTCATTTTTCTTTCTGGTTCTGTTCTCTTTGTCTCTGTCTTTC-AGAAGGACAAAAGCTCAGGATATTGCGAAAAGGACAAAANCTAT-ATCAAATTTTTGTCATTCTAGCTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E543113" ref_strand="+" ref_description="SGN-E543113 [TUS-64-M5]">
      <seq>ctggattctcttcgagaatgtgatggctttccaacgaaccaaggctacatttatcggcttgctagaagcaaaaagagctaatgaatgggttgtcacggagaaactaggtgatgctctcaagaacaaagaaaaaacaaaacaaaccaaaaaaccccgaggatctctatttggagacaggattcttccacaagaattgggattcgcagttttccttttcttttgtggatgctatgatgtcctctatgggaaaagccagtactttctttacatcttcctccaagtcatcactttcacaattgctggatttggctacattggcaccatcgtcccctcgtaatagcagaaacttcaaaaaaaaaaaaatcgtcctgtattgactcgtgtacactaaaataaatttttgagtgctttcgtgcaaccattttcaaaggatgccaaactcaaaatctccggataattttcttagagatactgtgttggtaaggaggagcgaagagcaaagagatatctatattaagcccagaacacagaagaagacgataaaacagatgaattagtgtagatagattgtatttttcttctattgaagctctttagttgtgtgacattgtaattctatagcttgcaagncatttttctttctgttcctgttctncttgtctctgtctttcaagagggacaaaagctcaggatattgcgaaaaggacaaaacttataatcnaatttttgtcattctagcttcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0099A03.1" temp_strand="-" temp_description="C06SLm0099A03.1  AC226730.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0099A03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="51838" stop="50382"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51538" g_stop="51362" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51361" i_stop="51249" i_length="113">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.819" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51248" g_stop="50683" g_length="566"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="743" r_length="566" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0099A03.1" gen_strand="-" ref_id="SGN-E543113" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>743</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0099A03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E543113" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51538" e_stop="51362"/>
          <exon e_start="51248" e_stop="50683"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGATTCTCTTCGAGAATGTGATGGCTTTCCAACGAACCAAGGCTACATTTATCGGCTTGCTAGAAGCAAAAAGAGCTAATGAATGGGTTGTCACGGAGAAACTAGGTGATGCTCTCAAGAACAAAGAAAAAACAAAACAAACCAAAAAACCCCGAGGATCTCTATTTGGAGACAGGTGAGAAACTCTCCTGAATGAAGCTTTTGTTTTCATGTTCTTGATATCATTGAACTATTAGAATATTGCATCAGTTTGTTAACCATGCATTATCGGTTGGTCTAATCATACAGGATTCTTCCACAAGAATTGGGATTCGCAGTTTTCCTTTTCTTTTGTGGATGCTATGATGTCCTCTATGGGAAAAGCCAGTACTTTCTTTACATCTTCCTCCAAGTCATCACTTTCACAATTGCTGGATTTGGCTACATTGGCACCATCGTCCCCTCGTAATAGCAGAAACTTCAAAAAAAAAAAAATCGTCCTGTATTGACTCGTGTACACTAAAATAAATTTTTGAGTGCTTTCGTGCAACCATTTTCAAAGGATGCCAAACTCAAAATCTCCGGATAATTTTCTTAGAGATACTGTGTTGGTAAGGAGGAGCGAAGAGCAAAGAGATATCTATATTAAGCCCAGAACACAGAAGAAGACGATAAAACAGATGAATTAGTGTAGATAGATTGTATTTTTCTTCTATTGAAGCTCTTTAGTTGTGTGACATTGTAATTCTATAGCTTGCAAGTCATTTTTCTTTCTGTTCTTGTTCTCTTTGTCTCTGTCTTTCAAGAGGGACAAAAGCTCAGGATATTGCGAAAAGGACAAAACTTATAATCAAATTTTTGTCATTCTAGCTTCA</genome_strand>
        <mrna_strand>CTGGATTCTCTTCGAGAATGTGATGGCTTTCCAACGAACCAAGGCTACATTTATCGGCTTGCTAGAAGCAAAAAGAGCTAATGAATGGGTTGTCACGGAGAAACTAGGTGATGCTCTCAAGAACAAAGAAAAAACAAAACAAACCAAAAAACCCCGAGGATCTCTATTTGGAGACAG.................................................................................................................GATTCTTCCACAAGAATTGGGATTCGCAGTTTTCCTTTTCTTTTGTGGATGCTATGATGTCCTCTATGGGAAAAGCCAGTACTTTCTTTACATCTTCCTCCAAGTCATCACTTTCACAATTGCTGGATTTGGCTACATTGGCACCATCGTCCCCTCGTAATAGCAGAAACTTCAAAAAAAAAAAAATCGTCCTGTATTGACTCGTGTACACTAAAATAAATTTTTGAGTGCTTTCGTGCAACCATTTTCAAAGGATGCCAAACTCAAAATCTCCGGATAATTTTCTTAGAGATACTGTGTTGGTAAGGAGGAGCGAAGAGCAAAGAGATATCTATATTAAGCCCAGAACACAGAAGAAGACGATAAAACAGATGAATTAGTGTAGATAGATTGTATTTTTCTTCTATTGAAGCTCTTTAGTTGTGTGACATTGTAATTCTATAGCTTGCAAGNCATTTTTCTTTCTGTTCCTGTTCTNCTTGTCTCTGTCTTTCAAGAGGGACAAAAGCTCAGGATATTGCGAAAAGGACAAAACTTATAATCNAATTTTTGTCATTCTAGCTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E543114" ref_strand="+" ref_description="SGN-E543114 [TUS-64-M6](-)">
      <seq>ctggattctcttcgagaatgtgatggctttccaacgaaccaaggctacatttatcggcttgctagaagcaaaaagagctaatgaatgggttgtcacggagaaactaggtgatgctctcaagaacaaagaaaaaacaaaacaaaccaaaaaaccccgaggatctctatttggagacaggattcttccacaagaattgggattcgcagttttccttttcttttgtggatgctatgatgtcctctatgggaaaagccagtactttctttacatcttcctccaagtcatcactttcacaattgctggatttggctacattggcaccatcgtcccctcgtaatagcagaaacttcaaaaaaaaaaaaatcgtcctgtattgactcgtgtacactaaaataaatttttgagtgctttcgtgcaaccattttcaaaggatgccaaactcaaaatctccggataattttcttagagatactgtgttggtaaggaggagcgaagagcaaagagatatctatattaagcccagaacacagaagaagacgataaaacagatgaattagtgtagatagattgtatttttcttctattgaagctctttagttgtgtgacattgtaattctatagcttgcaagtcatttttctttctgttcttgttctctttgtctctgtctttcaagagggacaaaagctcaggatattgcgaaaaggacaaaacttataatcaaatttttgtcattctagcttcaaaaaaaaaaaaaaaaaaactcgaggggggcccgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0099A03.1" temp_strand="-" temp_description="C06SLm0099A03.1  AC226730.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0099A03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="51838" stop="50382"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51538" g_stop="51362" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51361" i_stop="51249" i_length="113">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.819" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51248" g_stop="50683" g_length="566"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="743" r_length="566" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="744" polyA_stop="762"/>
      <MATCH_line gen_id="C06SLm0099A03.1" gen_strand="-" ref_id="SGN-E543114" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>743</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0099A03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E543114" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51538" e_stop="51362"/>
          <exon e_start="51248" e_stop="50683"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGATTCTCTTCGAGAATGTGATGGCTTTCCAACGAACCAAGGCTACATTTATCGGCTTGCTAGAAGCAAAAAGAGCTAATGAATGGGTTGTCACGGAGAAACTAGGTGATGCTCTCAAGAACAAAGAAAAAACAAAACAAACCAAAAAACCCCGAGGATCTCTATTTGGAGACAGGTGAGAAACTCTCCTGAATGAAGCTTTTGTTTTCATGTTCTTGATATCATTGAACTATTAGAATATTGCATCAGTTTGTTAACCATGCATTATCGGTTGGTCTAATCATACAGGATTCTTCCACAAGAATTGGGATTCGCAGTTTTCCTTTTCTTTTGTGGATGCTATGATGTCCTCTATGGGAAAAGCCAGTACTTTCTTTACATCTTCCTCCAAGTCATCACTTTCACAATTGCTGGATTTGGCTACATTGGCACCATCGTCCCCTCGTAATAGCAGAAACTTCAAAAAAAAAAAAATCGTCCTGTATTGACTCGTGTACACTAAAATAAATTTTTGAGTGCTTTCGTGCAACCATTTTCAAAGGATGCCAAACTCAAAATCTCCGGATAATTTTCTTAGAGATACTGTGTTGGTAAGGAGGAGCGAAGAGCAAAGAGATATCTATATTAAGCCCAGAACACAGAAGAAGACGATAAAACAGATGAATTAGTGTAGATAGATTGTATTTTTCTTCTATTGAAGCTCTTTAGTTGTGTGACATTGTAATTCTATAGCTTGCAAGTCATTTTTCTTTCTGTTCTTGTTCTCTTTGTCTCTGTCTTTCAAGAGGGACAAAAGCTCAGGATATTGCGAAAAGGACAAAACTTATAATCAAATTTTTGTCATTCTAGCTTCA</genome_strand>
        <mrna_strand>CTGGATTCTCTTCGAGAATGTGATGGCTTTCCAACGAACCAAGGCTACATTTATCGGCTTGCTAGAAGCAAAAAGAGCTAATGAATGGGTTGTCACGGAGAAACTAGGTGATGCTCTCAAGAACAAAGAAAAAACAAAACAAACCAAAAAACCCCGAGGATCTCTATTTGGAGACAG.................................................................................................................GATTCTTCCACAAGAATTGGGATTCGCAGTTTTCCTTTTCTTTTGTGGATGCTATGATGTCCTCTATGGGAAAAGCCAGTACTTTCTTTACATCTTCCTCCAAGTCATCACTTTCACAATTGCTGGATTTGGCTACATTGGCACCATCGTCCCCTCGTAATAGCAGAAACTTCAAAAAAAAAAAAATCGTCCTGTATTGACTCGTGTACACTAAAATAAATTTTTGAGTGCTTTCGTGCAACCATTTTCAAAGGATGCCAAACTCAAAATCTCCGGATAATTTTCTTAGAGATACTGTGTTGGTAAGGAGGAGCGAAGAGCAAAGAGATATCTATATTAAGCCCAGAACACAGAAGAAGACGATAAAACAGATGAATTAGTGTAGATAGATTGTATTTTTCTTCTATTGAAGCTCTTTAGTTGTGTGACATTGTAATTCTATAGCTTGCAAGTCATTTTTCTTTCTGTTCTTGTTCTCTTTGTCTCTGTCTTTCAAGAGGGACAAAAGCTCAGGATATTGCGAAAAGGACAAAACTTATAATCAAATTTTTGTCATTCTAGCTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E543112" ref_strand="+" ref_description="SGN-E543112 [TUS-64-M5](-)">
      <seq>cggcttgctagaagcaaaaagagctaatgaatgggttgtcacggagaaactaggtgatgctctcaagaacaaagaaaaaccaaaacaaaccaaaaaaccccgaggatctctatttggagacaggattcttccacaagaattgggattcgcagttttccttttcttttgtggatgctatgatgtcctctatgggaaaagccagtactttctttacatcttcctccaagtcatcactttcacaattgctggatttggctacattggcaccatcgtcccctcgtaatagcagaaacttcaaaaaaaaaaaaatcgtcctgtattgactcgtgtacactaaaataaatttttgagtgctttcgtgcaaccattttcaaaggatgccaaactcaaaatctccggataattttcttagagatactgtgttggtaaggaggagcgaagagcaaagagatatctatattaagcccagaacacagaagaagacgataaaacagatgaattagtgtagatagattgtatttttcttctattgaagctctttagttgtgtgacattgtaattctatagcttgcaagtcatttttctttctgttcttgttctctttgtctctgtctttcaagagggacaaaagctcaggatattgcgaaaaggacaaaacttataatcaaatttttgtcattctagcttcaaaaaaaaaaaaaaaaaaactcgaggggggcccggtccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0099A03.1" temp_strand="-" temp_description="C06SLm0099A03.1  AC226730.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0099A03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="51784" stop="50382"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51484" g_stop="51362" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="123" r_length="123" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51361" i_stop="51249" i_length="113">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.819" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51248" g_stop="50683" g_length="566"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="689" r_length="566" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="690" polyA_stop="708"/>
      <MATCH_line gen_id="C06SLm0099A03.1" gen_strand="-" ref_id="SGN-E543112" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>689</cumulative_length_of_scored_exons>
        <coverage percentage="0.948" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0099A03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E543112" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51484" e_stop="51362"/>
          <exon e_start="51248" e_stop="50683"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGCTTGCTAGAAGCAAAAAGAGCTAATGAATGGGTTGTCACGGAGAAACTAGGTGATGCTCTCAAGAACAAAGAAAAAACAAAACAAACCAAAAAACCCCGAGGATCTCTATTTGGAGACAGGTGAGAAACTCTCCTGAATGAAGCTTTTGTTTTCATGTTCTTGATATCATTGAACTATTAGAATATTGCATCAGTTTGTTAACCATGCATTATCGGTTGGTCTAATCATACAGGATTCTTCCACAAGAATTGGGATTCGCAGTTTTCCTTTTCTTTTGTGGATGCTATGATGTCCTCTATGGGAAAAGCCAGTACTTTCTTTACATCTTCCTCCAAGTCATCACTTTCACAATTGCTGGATTTGGCTACATTGGCACCATCGTCCCCTCGTAATAGCAGAAACTTCAAAAAAAAAAAAATCGTCCTGTATTGACTCGTGTACACTAAAATAAATTTTTGAGTGCTTTCGTGCAACCATTTTCAAAGGATGCCAAACTCAAAATCTCCGGATAATTTTCTTAGAGATACTGTGTTGGTAAGGAGGAGCGAAGAGCAAAGAGATATCTATATTAAGCCCAGAACACAGAAGAAGACGATAAAACAGATGAATTAGTGTAGATAGATTGTATTTTTCTTCTATTGAAGCTCTTTAGTTGTGTGACATTGTAATTCTATAGCTTGCAAGTCATTTTTCTTTCTGTTCTTGTTCTCTTTGTCTCTGTCTTTCAAGAGGGACAAAAGCTCAGGATATTGCGAAAAGGACAAAACTTATAATCAAATTTTTGTCATTCTAGCTTCA</genome_strand>
        <mrna_strand>CGGCTTGCTAGAAGCAAAAAGAGCTAATGAATGGGTTGTCACGGAGAAACTAGGTGATGCTCTCAAGAACAAAGAAAAACCAAAACAAACCAAAAAACCCCGAGGATCTCTATTTGGAGACAG.................................................................................................................GATTCTTCCACAAGAATTGGGATTCGCAGTTTTCCTTTTCTTTTGTGGATGCTATGATGTCCTCTATGGGAAAAGCCAGTACTTTCTTTACATCTTCCTCCAAGTCATCACTTTCACAATTGCTGGATTTGGCTACATTGGCACCATCGTCCCCTCGTAATAGCAGAAACTTCAAAAAAAAAAAAATCGTCCTGTATTGACTCGTGTACACTAAAATAAATTTTTGAGTGCTTTCGTGCAACCATTTTCAAAGGATGCCAAACTCAAAATCTCCGGATAATTTTCTTAGAGATACTGTGTTGGTAAGGAGGAGCGAAGAGCAAAGAGATATCTATATTAAGCCCAGAACACAGAAGAAGACGATAAAACAGATGAATTAGTGTAGATAGATTGTATTTTTCTTCTATTGAAGCTCTTTAGTTGTGTGACATTGTAATTCTATAGCTTGCAAGTCATTTTTCTTTCTGTTCTTGTTCTCTTTGTCTCTGTCTTTCAAGAGGGACAAAAGCTCAGGATATTGCGAAAAGGACAAAACTTATAATCAAATTTTTGTCATTCTAGCTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E303354" ref_strand="+" ref_description="SGN-E303354 [cLEX-2-K8]">
      <seq>tggattctcttcgagaatgtgatggctttccaacgaaccaaggctacatttatcggcttgctagaagcaaaaagagctaatgaatgggttgtcacggagaaactaggtgatgctctcaagaacaaagaaaaaacaaaacaaaccaaaaaaccccgaggatctctatttggagacaggattcttccacaagaattgggattcgcagttttccttttcttttgtggatgctatgatgtcctctatgggaaaagccagtactttctttacatcttcctccaagtcatcactttcacaattgctggatttggctacattggcaccatcgtcccctcgtaatagcagaaacttcaaaaaaaaaaaaatcgtcctgtattgactcgtgtacactaaaataaatttttgagtgctttcgtgcaaccattttcaaaggatgccaaactcaaaatctccggataattttcttagagatactgtgttggtaaggaggagcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0099A03.1" temp_strand="-" temp_description="C06SLm0099A03.1  AC226730.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0099A03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="51837" stop="50634"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51537" g_stop="51362" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="176" r_length="176" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51361" i_stop="51249" i_length="113">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.819" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51248" g_stop="50934" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="491" r_length="315" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0099A03.1" gen_strand="-" ref_id="SGN-E303354" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>491</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0099A03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E303354" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51537" e_stop="51362"/>
          <exon e_start="51248" e_stop="50934"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGATTCTCTTCGAGAATGTGATGGCTTTCCAACGAACCAAGGCTACATTTATCGGCTTGCTAGAAGCAAAAAGAGCTAATGAATGGGTTGTCACGGAGAAACTAGGTGATGCTCTCAAGAACAAAGAAAAAACAAAACAAACCAAAAAACCCCGAGGATCTCTATTTGGAGACAGGTGAGAAACTCTCCTGAATGAAGCTTTTGTTTTCATGTTCTTGATATCATTGAACTATTAGAATATTGCATCAGTTTGTTAACCATGCATTATCGGTTGGTCTAATCATACAGGATTCTTCCACAAGAATTGGGATTCGCAGTTTTCCTTTTCTTTTGTGGATGCTATGATGTCCTCTATGGGAAAAGCCAGTACTTTCTTTACATCTTCCTCCAAGTCATCACTTTCACAATTGCTGGATTTGGCTACATTGGCACCATCGTCCCCTCGTAATAGCAGAAACTTCAAAAAAAAAAAAATCGTCCTGTATTGACTCGTGTACACTAAAATAAATTTTTGAGTGCTTTCGTGCAACCATTTTCAAAGGATGCCAAACTCAAAATCTCCGGATAATTTTCTTAGAGATACTGTGTTGGTAAGGAGGAGCG</genome_strand>
        <mrna_strand>TGGATTCTCTTCGAGAATGTGATGGCTTTCCAACGAACCAAGGCTACATTTATCGGCTTGCTAGAAGCAAAAAGAGCTAATGAATGGGTTGTCACGGAGAAACTAGGTGATGCTCTCAAGAACAAAGAAAAAACAAAACAAACCAAAAAACCCCGAGGATCTCTATTTGGAGACAG.................................................................................................................GATTCTTCCACAAGAATTGGGATTCGCAGTTTTCCTTTTCTTTTGTGGATGCTATGATGTCCTCTATGGGAAAAGCCAGTACTTTCTTTACATCTTCCTCCAAGTCATCACTTTCACAATTGCTGGATTTGGCTACATTGGCACCATCGTCCCCTCGTAATAGCAGAAACTTCAAAAAAAAAAAAATCGTCCTGTATTGACTCGTGTACACTAAAATAAATTTTTGAGTGCTTTCGTGCAACCATTTTCAAAGGATGCCAAACTCAAAATCTCCGGATAATTTTCTTAGAGATACTGTGTTGGTAAGGAGGAGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E425383" ref_strand="-" ref_description="SGN-E425383 [STM-45-A21]">
      <seq>agcagcatcgttggtcgtgtggtcccgccaatttgttcaggaaaatggtgatggagatagttaggaataagagagtgaacatttggaagaagttttacgtgatctacagcttcttcttcgtccgaaagatcatagctcacatggtcacatttttctttttctgtgttgttcttccgttgagccttttagttcctgaagttgaaatccctacatggggtgccatctacatcccctgcattatcaccacattgaattctgttggaactccaaggtcaattcatctactcttctactggatcctctttgagaacgtgatggctttccaacgaaccaaggctacataaatcggcttgctagaagcaaaaagagctaatgaatgggttgtcacagagaagttaggtgatgctctcaagaccaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0099A03.1" temp_strand="-" temp_description="C06SLm0099A03.1  AC226730.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0099A03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="52410" stop="51109"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52110" g_stop="52040" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="71" r_length="71" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52039" i_stop="51834" i_length="206">
            <donor d_prob="0.768" d_score="0.92"/>
            <acceptor a_prob="0.978" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51833" g_stop="51634" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="271" r_length="200" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51633" i_stop="51560" i_length="74">
            <donor d_prob="0.667" d_score="1.00"/>
            <acceptor a_prob="0.927" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51559" g_stop="51409" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="422" r_length="151" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0099A03.1" gen_strand="-" ref_id="SGN-E425383" ref_strand="-">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>422</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0099A03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E425383" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="52110" e_stop="52040"/>
          <exon e_start="51833" e_stop="51634"/>
          <exon e_start="51559" e_stop="51409"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAGCATCGTTGGTCGTGTGGTCCTGCAAATTTGTTCAGGAAAATGGTTATGGAGATTGTTAGGAATAAGGTATGCAATGTAGCAATGTTGTTAGTCCCATATTGGGTGGGATGAGGTTAATTCGTCTGCTTATATGGACTTAAGCAATCCTCTCGTTATGAGCTAGCTTTTGGGGTTTAGTTAGGTCCAAGATTCACTTTTTTACATGGTATCAGAGTTGGGTTCTAAAATTGTTTGAATAAAGAATCTGAATTGTTCCGTTTTCGTGTTTGCAGAGAGTAAACATTTGGAAGAAGTTTTATGTGATCTACAGCTTCTTCTTCGTCCGGAAGATCATAGCTCACATGGTCACTTTTTTCTTCTTCTGTGTTGTTCTTCCGTTGAGCCTTTTAGTTCCTGAAGTTGAAATCCCTACATGGGGTGCCATCTACATCCCCTGCATTATCACCACATTGAATTCTGTTGGAACTCCAAGGTCTATATAATATGCCTAACAAGGTTGAAATTTTCCCTCCCGAAGTTTTCTAATTTGATTATGTAATTTGACAGGTCAATTCATCTACTCTTCTACTGGATTCTCTTCGAGAATGTGATGGCTTTCCAACGAACCAAGGCTACATTTATCGGCTTGCTAGAAGCAAAAAGAGCTAATGAATGGGTTGTCACGGAGAAACTAGGTGATGCTCTCAAGAACAAAGAA</genome_strand>
        <mrna_strand>AGCAGCATCGTTGGTCGTGTGGTCCCGCCAATTTGTTCAGGAAAATGGTGATGGAGATAGTTAGGAATAAG..............................................................................................................................................................................................................AGAGTGAACATTTGGAAGAAGTTTTACGTGATCTACAGCTTCTTCTTCGTCCGAAAGATCATAGCTCACATGGTCACATTTTTCTTTTTCTGTGTTGTTCTTCCGTTGAGCCTTTTAGTTCCTGAAGTTGAAATCCCTACATGGGGTGCCATCTACATCCCCTGCATTATCACCACATTGAATTCTGTTGGAACTCCAAG..........................................................................GTCAATTCATCTACTCTTCTACTGGATCCTCTTTGAGAACGTGATGGCTTTCCAACGAACCAAGGCTACATAAATCGGCTTGCTAGAAGCAAAAAGAGCTAATGAATGGGTTGTCACAGAGAAGTTAGGTGATGCTCTCAAGACCAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E425382" ref_strand="+" ref_description="SGN-E425382 [STM-45-A21]">
      <seq>tcaagttcttgatgattctactgatcctctcattaaggatttggtagagaaagaatgcttaaggtgggcaaacaaagggattaacattaggtaccaaattagagagaacagaggaggttacaaagctggagctcttaaagaaggattaaaacgtgattatgttaaagattgcgaatacgtcgtcattttcgacgctgatttccggcctgaaccggattttctccggcgagctatcccttttcttgtacataactcagaaattgcactcgttcaaggtcgttggcgttttgtgaatgcaaatgagtgcttattaacgagaatgcaagagatgtcattagattaccatttcactgtggagcaagaagtgggttcatctactcatgcattctttgggttcaatggaacaggaggggtgtggagaatagcagcaattaatgaagctggtggatggaaagacagaacaactgtagaggatatggaccttgcagttagagctagtcttaaaggctggaagtttctttaccttggtgatctccaggtgaaaagtgaactacctagtacattcaaagcctttcgttttcagcagcatcgttggtcgtgtggtcccgccaatttgttcaggaaaatggtgatggagatagttaggaaatagagagtgaacatttggaagaaagtttacgtgatctacagcttcttcttcgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0099A03.1" temp_strand="-" temp_description="C06SLm0099A03.1  AC226730.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0099A03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="54293" stop="51483"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53993" g_stop="53957" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53956" i_stop="53622" i_length="335">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53621" g_stop="53369" g_length="253"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="290" r_length="253" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53368" i_stop="52650" i_length="719">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.914" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52649" g_stop="52539" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="401" r_length="111" r_score="0.964"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52538" i_stop="52385" i_length="154">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.976" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52384" g_stop="52248" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="538" r_length="137" r_score="0.985"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="52247" i_stop="52154" i_length="94">
            <donor d_prob="0.866" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="52153" g_stop="52040" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="539" r_stop="652" r_length="114" r_score="0.947"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="52039" i_stop="51834" i_length="206">
            <donor d_prob="0.768" d_score="0.88"/>
            <acceptor a_prob="0.978" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="51833" g_stop="51783" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="653" r_stop="703" r_length="51" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0099A03.1" gen_strand="-" ref_id="SGN-E425382" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>703</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0099A03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E425382" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53993" e_stop="53957"/>
          <exon e_start="53621" e_stop="53369"/>
          <exon e_start="52649" e_stop="52539"/>
          <exon e_start="52384" e_stop="52248"/>
          <exon e_start="52153" e_stop="52040"/>
          <exon e_start="51833" e_stop="51783"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAGTTCTTGATGACTCTACTGATCCTCTCATTAAGGTATCCATTAGTTCCTTGAAAACTCTTTACTATACCTCCATAAGCATATACATTATATCGAATGGATATAATCACTTTATGTTTAGTCGGAATCTTGCGCAACGCAAAATTGAATTAGTTGTACCTAAAGCAAATAAATAAAAAAAAGTTTTATTAATTAATTATAGTTTAATTAAGAATATCCAAGCTTTTATTACACACATTTTATTTTTCTACCCACCACAACCAACATTTTTCCTCCAATTTCTTCATATAGTATATACTCAATAAATGAGTATGGGTTCCCTTACCTTTGAATAAATAATTAATGACTTATTTATTTATTAATGTTGAAGGATTTGGTAGAGAAAGAATGCTTAAGGTGGGCAAACAAAGGGATTAACATTAGATACCAAATTAGAGAGAACAGAGGAGGTTACAAAGCTGGAGCTCTTAAAGAAGGATTAAAACGTGATTATGTTAAAGATTGCGAATACGTCGTCATTTTCGACGCTGATTTCCGGCCTGAACCGGATTTTCTCCGGCGAGCTATCCCTTTTCTTGTACATAACTCGGAAATTGCACTCGTTCAAGGTCGTTGGCGTTTTGGTAAGCTCAAATTTTAATCATCATTAAGCTAATCATTACTCAATTAATTAAATTACATTATGTTCCTAAACCAAAGTGTCGGTGCTCTTTACTACACATAGTGTTGGTGTTTACTTACTAATTACTTTTACTGTACGTTTATGCTTACGCATATTCGTGACCCGCTGCAGAAACTTCAAGTCGTTTGCAAACTTAAAGTTAATGATTAGTCCGAATTAAAATTTCCTAAACAGAATTGATATTGAAAATTAAAAAATATTTTTGTGAAGACTTTGTCAGAGAACTTTATTTGTTTTAAAATATCAGTAGCGTCAGCAACATTTGCTAATGACGTTATTATCCTGTCCCTTTGTTGAGACCGAGTCAGAAACCCCGCAGTTACCGGCGAGGAAGTGCTATATATCCGGGGTAGGTTTGTCATTTTGTCAGCTCATGAAAGGGTAGATTCGTCATTTTATAGTGTCTACATGTGCTATTATGCTCTCTACAATTCTCGCCGACACTTCCATTCGAACAACATGTTGTATGATGTGTACATTAGTAAAATTTAATGATACAACGTAAATTAAAAATTCGAAACTGAAAATGATATTTCCAGGATATCCGATGACGTGGAATATAAATGTTTATTTCATCTAAGTGACTAGAATATTGTTAGAGTTGAAAATAATTATGTGGTAACTTGTAATTAACCGAGCTAATCCTTTTGTTAATTACAGTGAATGCAAATGAGTGCTTATTAACAAGAATGCAAGAGATGTCATTAGATTATCATTTCACTGTAGAGCAAGAAGTGGGTTCATCCACTCATGCATTCTTTGGGTTCAATGGTAAGTGAAATATTTTGTACTATTACATGTCACACTTTTTTATAAGAAAATGTTATTATTTGTTATATATTTTTATTGCTATAGTAATATAAAAAAGAACGTGTAACCGAACGATTGTTATAAAGAGGTCGGTGGAACTTGGTCAATTTTACAGGAACAGGAGGTGTGTGGAGAATAGCAGCAATTAATGAAGCTGGTGGATGGAAAGACAGAACAACTGTAGAGGATATGGACCTTGCAGTTAGAGCTAGTCTTAAAGGCTGGAAGTTTCTTTATCTTGGTGATCTCCAGGTGTTTGATAAAATTCCTCATAGAACCACTCTGTTTTTGCCTTATTTTACTTTGAAGATTTATCTTGTTACTAAACTGAATTTTGTTATTCTAGGTGAAAAGTGAACTACCTAGTACATTCAAAGCCTTTCGTTTTCAGCAGCATCGTTGGTCGTGTGGTCCTGCAAATTTGTTCAGGAAAATGGTTATGGAGATTGTTAGGAATAAGGTATGCAATGTAGCAATGTTGTTAGTCCCATATTGGGTGGGATGAGGTTAATTCGTCTGCTTATATGGACTTAAGCAATCCTCTCGTTATGAGCTAGCTTTTGGGGTTTAGTTAGGTCCAAGATTCACTTTTTTACATGGTATCAGAGTTGGGTTCTAAAATTGTTTGAATAAAGAATCTGAATTGTTCCGTTTTCGTGTTTGCAGAGAGTAAACATTTGGAAGAAGTTTTATGTGATCTACAGCTTCTTCTTCGTC</genome_strand>
        <mrna_strand>TCAAGTTCTTGATGATTCTACTGATCCTCTCATTAAG...............................................................................................................................................................................................................................................................................................................................................GATTTGGTAGAGAAAGAATGCTTAAGGTGGGCAAACAAAGGGATTAACATTAGGTACCAAATTAGAGAGAACAGAGGAGGTTACAAAGCTGGAGCTCTTAAAGAAGGATTAAAACGTGATTATGTTAAAGATTGCGAATACGTCGTCATTTTCGACGCTGATTTCCGGCCTGAACCGGATTTTCTCCGGCGAGCTATCCCTTTTCTTGTACATAACTCAGAAATTGCACTCGTTCAAGGTCGTTGGCGTTTTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAATGCAAATGAGTGCTTATTAACGAGAATGCAAGAGATGTCATTAGATTACCATTTCACTGTGGAGCAAGAAGTGGGTTCATCTACTCATGCATTCTTTGGGTTCAATG..........................................................................................................................................................GAACAGGAGGGGTGTGGAGAATAGCAGCAATTAATGAAGCTGGTGGATGGAAAGACAGAACAACTGTAGAGGATATGGACCTTGCAGTTAGAGCTAGTCTTAAAGGCTGGAAGTTTCTTTACCTTGGTGATCTCCAG..............................................................................................GTGAAAAGTGAACTACCTAGTACATTCAAAGCCTTTCGTTTTCAGCAGCATCGTTGGTCGTGTGGTCCCGCCAATTTGTTCAGGAAAATGGTGATGGAGATAGTTAGGAAATAG..............................................................................................................................................................................................................AGAGTGAACATTTGGAAGAAAGTTTACGTGATCTACAGCTTCTTCTTCGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E454519" ref_strand="+" ref_description="SGN-E454519 [cSTS-23-H15]">
      <seq>tcaagttcttgatgattctactgatcctctcattaaggatttggtagagaaagaatgcttaaggtgggcaaacaaagggattaacattaggtaccaaattagagagaacagaggaggttacaaagctggagctcttaaagaaggattaaaacgtgattatgttaaagattgcgaatacgtcgtcattttcgacgctgatttccggcctgaaccggattttctccggcgagctatcccttttcttgtacataactcagaaattgcactcgttcaaggtcgttggcgttttgtgaatgcaaatgagtgcttattaacgagaatgcaagagatgtcattagattaccatttcactgtggagcaagaagtgggttcatctactcatgcattctttgggttcaatggaacaggaggggtgtggagaatagcagcaattaatgaagctggtggatggaaagacagaacaactgtagaggatatggaccttgcagttagagctagtcttaaagggctggaagtttctttaccttggtgatctccaggtgaaaagtgaactacctagtacattcaaagcctttcgttttcagcagcatcgttggtcgtgtggtcccgcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0099A03.1" temp_strand="-" temp_description="C06SLm0099A03.1  AC226730.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0099A03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="54293" stop="51780"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53993" g_stop="53957" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53956" i_stop="53622" i_length="335">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53621" g_stop="53369" g_length="253"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="290" r_length="253" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53368" i_stop="52650" i_length="719">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.914" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52649" g_stop="52539" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="401" r_length="111" r_score="0.964"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52538" i_stop="52385" i_length="154">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.976" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52384" g_stop="52248" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="539" r_length="138" r_score="0.971"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="52247" i_stop="52154" i_length="94">
            <donor d_prob="0.866" d_score="0.94"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="52153" g_stop="52081" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="540" r_stop="612" r_length="73" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0099A03.1" gen_strand="-" ref_id="SGN-E454519" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>611</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0099A03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E454519" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53993" e_stop="53957"/>
          <exon e_start="53621" e_stop="53369"/>
          <exon e_start="52649" e_stop="52539"/>
          <exon e_start="52384" e_stop="52248"/>
          <exon e_start="52153" e_stop="52081"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAGTTCTTGATGACTCTACTGATCCTCTCATTAAGGTATCCATTAGTTCCTTGAAAACTCTTTACTATACCTCCATAAGCATATACATTATATCGAATGGATATAATCACTTTATGTTTAGTCGGAATCTTGCGCAACGCAAAATTGAATTAGTTGTACCTAAAGCAAATAAATAAAAAAAAGTTTTATTAATTAATTATAGTTTAATTAAGAATATCCAAGCTTTTATTACACACATTTTATTTTTCTACCCACCACAACCAACATTTTTCCTCCAATTTCTTCATATAGTATATACTCAATAAATGAGTATGGGTTCCCTTACCTTTGAATAAATAATTAATGACTTATTTATTTATTAATGTTGAAGGATTTGGTAGAGAAAGAATGCTTAAGGTGGGCAAACAAAGGGATTAACATTAGATACCAAATTAGAGAGAACAGAGGAGGTTACAAAGCTGGAGCTCTTAAAGAAGGATTAAAACGTGATTATGTTAAAGATTGCGAATACGTCGTCATTTTCGACGCTGATTTCCGGCCTGAACCGGATTTTCTCCGGCGAGCTATCCCTTTTCTTGTACATAACTCGGAAATTGCACTCGTTCAAGGTCGTTGGCGTTTTGGTAAGCTCAAATTTTAATCATCATTAAGCTAATCATTACTCAATTAATTAAATTACATTATGTTCCTAAACCAAAGTGTCGGTGCTCTTTACTACACATAGTGTTGGTGTTTACTTACTAATTACTTTTACTGTACGTTTATGCTTACGCATATTCGTGACCCGCTGCAGAAACTTCAAGTCGTTTGCAAACTTAAAGTTAATGATTAGTCCGAATTAAAATTTCCTAAACAGAATTGATATTGAAAATTAAAAAATATTTTTGTGAAGACTTTGTCAGAGAACTTTATTTGTTTTAAAATATCAGTAGCGTCAGCAACATTTGCTAATGACGTTATTATCCTGTCCCTTTGTTGAGACCGAGTCAGAAACCCCGCAGTTACCGGCGAGGAAGTGCTATATATCCGGGGTAGGTTTGTCATTTTGTCAGCTCATGAAAGGGTAGATTCGTCATTTTATAGTGTCTACATGTGCTATTATGCTCTCTACAATTCTCGCCGACACTTCCATTCGAACAACATGTTGTATGATGTGTACATTAGTAAAATTTAATGATACAACGTAAATTAAAAATTCGAAACTGAAAATGATATTTCCAGGATATCCGATGACGTGGAATATAAATGTTTATTTCATCTAAGTGACTAGAATATTGTTAGAGTTGAAAATAATTATGTGGTAACTTGTAATTAACCGAGCTAATCCTTTTGTTAATTACAGTGAATGCAAATGAGTGCTTATTAACAAGAATGCAAGAGATGTCATTAGATTATCATTTCACTGTAGAGCAAGAAGTGGGTTCATCCACTCATGCATTCTTTGGGTTCAATGGTAAGTGAAATATTTTGTACTATTACATGTCACACTTTTTTATAAGAAAATGTTATTATTTGTTATATATTTTTATTGCTATAGTAATATAAAAAAGAACGTGTAACCGAACGATTGTTATAAAGAGGTCGGTGGAACTTGGTCAATTTTACAGGAACAGGAGGTGTGTGGAGAATAGCAGCAATTAATGAAGCTGGTGGATGGAAAGACAGAACAACTGTAGAGGATATGGACCTTGCAGTTAGAGCTAGTCTTAAA-GGCTGGAAGTTTCTTTATCTTGGTGATCTCCAGGTGTTTGATAAAATTCCTCATAGAACCACTCTGTTTTTGCCTTATTTTACTTTGAAGATTTATCTTGTTACTAAACTGAATTTTGTTATTCTAGGTGAAAAGTGAACTACCTAGTACATTCAAAGCCTTTCGTTTTCAGCAGCATCGTTGGTCGTGTGGTCCTGCAA</genome_strand>
        <mrna_strand>TCAAGTTCTTGATGATTCTACTGATCCTCTCATTAAG...............................................................................................................................................................................................................................................................................................................................................GATTTGGTAGAGAAAGAATGCTTAAGGTGGGCAAACAAAGGGATTAACATTAGGTACCAAATTAGAGAGAACAGAGGAGGTTACAAAGCTGGAGCTCTTAAAGAAGGATTAAAACGTGATTATGTTAAAGATTGCGAATACGTCGTCATTTTCGACGCTGATTTCCGGCCTGAACCGGATTTTCTCCGGCGAGCTATCCCTTTTCTTGTACATAACTCAGAAATTGCACTCGTTCAAGGTCGTTGGCGTTTTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAATGCAAATGAGTGCTTATTAACGAGAATGCAAGAGATGTCATTAGATTACCATTTCACTGTGGAGCAAGAAGTGGGTTCATCTACTCATGCATTCTTTGGGTTCAATG..........................................................................................................................................................GAACAGGAGGGGTGTGGAGAATAGCAGCAATTAATGAAGCTGGTGGATGGAAAGACAGAACAACTGTAGAGGATATGGACCTTGCAGTTAGAGCTAGTCTTAAAGGGCTGGAAGTTTCTTTACCTTGGTGATCTCCAG..............................................................................................GTGAAAAGTGAACTACCTAGTACATTCAAAGCCTTTCGTTTTCAGCAGCATCGTTGGTCGTGTGGTCCCGCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E448605" ref_strand="+" ref_description="SGN-E448605 [cSTS-3-N23]">
      <seq>tcaagttcttgatgattctactgatcctctcattaaggatttggtagagaaagaatgcttaaggtgggcaaacaaagggattaacattaggtaccaaattagagagaacagaggaggttacaaagctggagctcttaaagaaggattaaaacgtgattatgttagagattgcgaatacgtcgtcattttcgacgctgatttccggcctgaaccggattttctccggcgagctatcccttttcttgtacataactcagaaattgcactcgttcaaggtcgttggcgttttgtgaatgcaaatgagtgcttattaacgagaatgcaagagatgtcattagattaccatttcactgtggagcaagaagtgggttcatctactcatgcattctttgggttcaatggaacaggaggggtgtggagaatagcagcaattaatgaagctggtggatggaaagacagaacaactgtagaggatatggaccttgcagttagagctagtcttaaaggctggaagtttctttaccttggtgatctccaggtgaaaagtgaactacct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0099A03.1" temp_strand="-" temp_description="C06SLm0099A03.1  AC226730.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0099A03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="54293" stop="51836"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53993" g_stop="53957" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53956" i_stop="53622" i_length="335">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53621" g_stop="53369" g_length="253"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="290" r_length="253" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53368" i_stop="52650" i_length="719">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.914" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52649" g_stop="52539" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="401" r_length="111" r_score="0.964"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52538" i_stop="52385" i_length="154">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.976" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52384" g_stop="52248" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="538" r_length="137" r_score="0.985"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="52247" i_stop="52154" i_length="94">
            <donor d_prob="0.866" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="52153" g_stop="52136" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="539" r_stop="556" r_length="18" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0099A03.1" gen_strand="-" ref_id="SGN-E448605" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0099A03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E448605" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53993" e_stop="53957"/>
          <exon e_start="53621" e_stop="53369"/>
          <exon e_start="52649" e_stop="52539"/>
          <exon e_start="52384" e_stop="52248"/>
          <exon e_start="52153" e_stop="52136"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAGTTCTTGATGACTCTACTGATCCTCTCATTAAGGTATCCATTAGTTCCTTGAAAACTCTTTACTATACCTCCATAAGCATATACATTATATCGAATGGATATAATCACTTTATGTTTAGTCGGAATCTTGCGCAACGCAAAATTGAATTAGTTGTACCTAAAGCAAATAAATAAAAAAAAGTTTTATTAATTAATTATAGTTTAATTAAGAATATCCAAGCTTTTATTACACACATTTTATTTTTCTACCCACCACAACCAACATTTTTCCTCCAATTTCTTCATATAGTATATACTCAATAAATGAGTATGGGTTCCCTTACCTTTGAATAAATAATTAATGACTTATTTATTTATTAATGTTGAAGGATTTGGTAGAGAAAGAATGCTTAAGGTGGGCAAACAAAGGGATTAACATTAGATACCAAATTAGAGAGAACAGAGGAGGTTACAAAGCTGGAGCTCTTAAAGAAGGATTAAAACGTGATTATGTTAAAGATTGCGAATACGTCGTCATTTTCGACGCTGATTTCCGGCCTGAACCGGATTTTCTCCGGCGAGCTATCCCTTTTCTTGTACATAACTCGGAAATTGCACTCGTTCAAGGTCGTTGGCGTTTTGGTAAGCTCAAATTTTAATCATCATTAAGCTAATCATTACTCAATTAATTAAATTACATTATGTTCCTAAACCAAAGTGTCGGTGCTCTTTACTACACATAGTGTTGGTGTTTACTTACTAATTACTTTTACTGTACGTTTATGCTTACGCATATTCGTGACCCGCTGCAGAAACTTCAAGTCGTTTGCAAACTTAAAGTTAATGATTAGTCCGAATTAAAATTTCCTAAACAGAATTGATATTGAAAATTAAAAAATATTTTTGTGAAGACTTTGTCAGAGAACTTTATTTGTTTTAAAATATCAGTAGCGTCAGCAACATTTGCTAATGACGTTATTATCCTGTCCCTTTGTTGAGACCGAGTCAGAAACCCCGCAGTTACCGGCGAGGAAGTGCTATATATCCGGGGTAGGTTTGTCATTTTGTCAGCTCATGAAAGGGTAGATTCGTCATTTTATAGTGTCTACATGTGCTATTATGCTCTCTACAATTCTCGCCGACACTTCCATTCGAACAACATGTTGTATGATGTGTACATTAGTAAAATTTAATGATACAACGTAAATTAAAAATTCGAAACTGAAAATGATATTTCCAGGATATCCGATGACGTGGAATATAAATGTTTATTTCATCTAAGTGACTAGAATATTGTTAGAGTTGAAAATAATTATGTGGTAACTTGTAATTAACCGAGCTAATCCTTTTGTTAATTACAGTGAATGCAAATGAGTGCTTATTAACAAGAATGCAAGAGATGTCATTAGATTATCATTTCACTGTAGAGCAAGAAGTGGGTTCATCCACTCATGCATTCTTTGGGTTCAATGGTAAGTGAAATATTTTGTACTATTACATGTCACACTTTTTTATAAGAAAATGTTATTATTTGTTATATATTTTTATTGCTATAGTAATATAAAAAAGAACGTGTAACCGAACGATTGTTATAAAGAGGTCGGTGGAACTTGGTCAATTTTACAGGAACAGGAGGTGTGTGGAGAATAGCAGCAATTAATGAAGCTGGTGGATGGAAAGACAGAACAACTGTAGAGGATATGGACCTTGCAGTTAGAGCTAGTCTTAAAGGCTGGAAGTTTCTTTATCTTGGTGATCTCCAGGTGTTTGATAAAATTCCTCATAGAACCACTCTGTTTTTGCCTTATTTTACTTTGAAGATTTATCTTGTTACTAAACTGAATTTTGTTATTCTAGGTGAAAAGTGAACTACCT</genome_strand>
        <mrna_strand>TCAAGTTCTTGATGATTCTACTGATCCTCTCATTAAG...............................................................................................................................................................................................................................................................................................................................................GATTTGGTAGAGAAAGAATGCTTAAGGTGGGCAAACAAAGGGATTAACATTAGGTACCAAATTAGAGAGAACAGAGGAGGTTACAAAGCTGGAGCTCTTAAAGAAGGATTAAAACGTGATTATGTTAGAGATTGCGAATACGTCGTCATTTTCGACGCTGATTTCCGGCCTGAACCGGATTTTCTCCGGCGAGCTATCCCTTTTCTTGTACATAACTCAGAAATTGCACTCGTTCAAGGTCGTTGGCGTTTTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAATGCAAATGAGTGCTTATTAACGAGAATGCAAGAGATGTCATTAGATTACCATTTCACTGTGGAGCAAGAAGTGGGTTCATCTACTCATGCATTCTTTGGGTTCAATG..........................................................................................................................................................GAACAGGAGGGGTGTGGAGAATAGCAGCAATTAATGAAGCTGGTGGATGGAAAGACAGAACAACTGTAGAGGATATGGACCTTGCAGTTAGAGCTAGTCTTAAAGGCTGGAAGTTTCTTTACCTTGGTGATCTCCAG..............................................................................................GTGAAAAGTGAACTACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>133</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="4421" PGL_stop="4097"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="4421" e_stop="4097"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.929"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.929">
            <gDNA_exon_boundary e_start="4421" e_stop="4097" e_length="325"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4421" stop="4097"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393076" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4421" stop="4129"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393075" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4421" stop="4269"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392727" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAAAATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAAGATATATGTTTTTCTCTTGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGCTTGAGAAAATTGTATTTCGCTGCAATTGTATAATTCGCAATTATATAATTCGTTGGTCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAAATTGTATAATTAAGTGTATAGCACGAAGATATATATTTTTGCATGTGTATATACAATTTTCTCTCGCTTTATACAAAACAGAAACAAAATTTATACACTTCTGTGTATAAAGCGAGAGAG</gDNA_template>
            <first_frame> *  N  V  C  I  L  H  N  Y  K  C  M  A  R  R  Y  M  F  F  S  C  F  I  Q  K  Q  K  H  N  I  Y  T  S  V  V  *  S  L  R  K  L  Y  F  A  A  I  V  *  F  A  I  I  *  F  V  G  L  F  L  C  N  I  *  S  K  M  F  V  N  C  I  I  K  C  I  A  R  R  Y  I  F  L  H  V  Y  I  Q  F  S  L  A  L  Y  K  T  E  T  K  F  I  H  F  C  V  *  S  E  R  </first_frame>
            <second_frame>  K  M  Y  V  Y  C  I  I  I  S  V  W  Q  E  D  I  C  F  S  L  A  L  Y  K  N  K  N  T  I  Y  T  L  L  L  Y  K  A  *  E  N  C  I  S  L  Q  L  Y  N  S  Q  L  Y  N  S  L  V  F  F  S  A  I  F  E  V  K  C  L  *  I  V  *  L  S  V  *  H  E  D  I  Y  F  C  M  C  I  Y  N  F  L  S  L  Y  T  K  Q  K  Q  N  L  Y  T  S  V  Y  K  A  R  E </second_frame>
            <third_frame>   K  C  M  Y  I  A  *  L  *  V  Y  G  K  K  I  Y  V  F  L  L  L  Y  T  K  T  K  T  Q  Y  I  H  F  C  C  I  K  L  E  K  I  V  F  R  C  N  C  I  I  R  N  Y  I  I  R  W  S  F  S  L  Q  Y  L  K  *  N  V  C  K  L  Y  N  *  V  Y  S  T  K  I  Y  I  F  A  C  V  Y  T  I  F  S  R  F  I  Q  N  R  N  K  I  Y  T  L  L  C  I  K  R  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06SLm0099A03.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="5998" PGL_stop="7565"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="5998" e_stop="7565"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="5998" e_stop="7565" e_length="1568"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5998" stop="6551"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242800" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6549" stop="7069"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268119" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6616" stop="7119"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240100" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6616" stop="6966"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239580" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6618" stop="7461"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378248" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6618" stop="7059"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231481" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7116" stop="7565"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325192" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAGTGTGAGATTTGCAAAAGCTATTTGAACTCTACATGGTCTTTAGAGTTCAAAAATCTTTGCGATTGGTACTCTTATCTACTCAAAAAATCACCCACTGGTACAATACATGTACACGTTCTTGGAAATGTCATTACATCAAATCCAAACAACGTTGAATACATGCTTAAAACAAATTTCGATAATTTTCCTAAAGGAAAACAGTTTTCTACTATCCTCGGCGATTTATTAGGCCGAGGAATTTTCGCCGTAGACGGCGAAATGTGGAAGTTTCAACGGAAGATGGCAAGTTTAGAACTCGGACGCGTATCGATACGCTCGTACGCTTTCGATATCGTCAGTGACGAAATTAGAAACCGGTTGATTCCGCTTTTGGAAAGTAATATCCATACTGTTTTGGACTTACAAGATGTTTTACGACGTTTTTCGTTCGATAGCATCTGTAAATTTTCATTTGGTATGGATCCTGGTTGTTTGAAATTATCATTACCAGATTCAGATCTTCAAGAGTCATTTGATTTAGCTTCGAAATTGTCTGCTGAAAGAGCTATGACGGTTTCACCTTTAGTGTGGAAAATTAAAAGGAGTTTGAATATTGGATCAGAAAAGAAGCTAAAAGAAGCGATCGAAAAAGTTGATGTACTTGCTGAGGAGGTAATAATTCAGAAAAGAAAAAACGATTTTTCTTCCCAAAATGACGTTTTGTCTAGGTTCATGAGGAATATTGATGATGATAAACTCCTTAGGGACATTATCGTCAGTTTTCTATTGGCGGGTAGAGACACTGTTGCGTCCGGACTGACTACTTTTTTTTGGCTACTAGCTCAACATCCACATGTTATTAATGAAATTCGAGCTGAGTCGAATCGAGTAATGGGAAAAACAGTAAATGGAACTCTAGCTACTTTCGAAGGAATTCGGGAAATGCATTTTTTGACTGCAGCTATACATGAGAGTATTAGGCTATTTCCGCCTGTTCAATTTGATTCCAAGTTTTGTCAAGAAGACGATACGCTCCCTGATGGTACGTTCGTGGCTAAAGGGACGAGGGTGACGTATCATCCATATGCAATGGGGAGGATGGAGGGTATTTGGGGTAAAGATTGTTTAGAATTCAAGCCAGAAAGATGGTTGGAAGACGGGGTTTTTAAGGCACAGTGTCCTTTTAAATATCCCGTTTTTCAAGGTGGTGTTAGGGTTTGTTTGGGTAAAGATTTATCTATTGTGGAAATGAAGAGTGTTGCTTTGGCTTTGATTAGGCAATTCGACTTTCAAGTTCATTTGGCTAAAGACCAGGCACCTAAGTTCATGCCGGGATTGACAGCCACCGTGAGAGGCGGACTTCCCATCATGGTTCAAAAAAGACGAGAACAATAGACACTGACACGAATTCAAGATTTAGAGTCAGTATTGTACAACTTTTGTAATTAATTATTAGTTTATACTTCTATCTTTTAGCTAGCGTTTTAGGCTTAGAGCAAGCTGAACTATGTGTATATAGACGACTAACGTCAAAAAAGCTTATGACTTATGATGATATAATAACAAAATTGTTCAAAAAAATATTG</gDNA_template>
            <first_frame> E  C  E  I  C  K  S  Y  L  N  S  T  W  S  L  E  F  K  N  L  C  D  W  Y  S  Y  L  L  K  K  S  P  T  G  T  I  H  V  H  V  L  G  N  V  I  T  S  N  P  N  N  V  E  Y  M  L  K  T  N  F  D  N  F  P  K  G  K  Q  F  S  T  I  L  G  D  L  L  G  R  G  I  F  A  V  D  G  E  M  W  K  F  Q  R  K  M  A  S  L  E  L  G  R  V  S  I  R  S  Y  A  F  D  I  V  S  D  E  I  R  N  R  L  I  P  L  L  E  S  N  I  H  T  V  L  D  L  Q  D  V  L  R  R  F  S  F  D  S  I  C  K  F  S  F  G  M  D  P  G  C  L  K  L  S  L  P  D  S  D  L  Q  E  S  F  D  L  A  S  K  L  S  A  E  R  A  M  T  V  S  P  L  V  W  K  I  K  R  S  L  N  I  G  S  E  K  K  L  K  E  A  I  E  K  V  D  V  L  A  E  E  V  I  I  Q  K  R  K  N  D  F  S  S  Q  N  D  V  L  S  R  F  M  R  N  I  D  D  D  K  L  L  R  D  I  I  V  S  F  L  L  A  G  R  D  T  V  A  S  G  L  T  T  F  F  W  L  L  A  Q  H  P  H  V  I  N  E  I  R  A  E  S  N  R  V  M  G  K  T  V  N  G  T  L  A  T  F  E  G  I  R  E  M  H  F  L  T  A  A  I  H  E  S  I  R  L  F  P  P  V  Q  F  D  S  K  F  C  Q  E  D  D  T  L  P  D  G  T  F  V  A  K  G  T  R  V  T  Y  H  P  Y  A  M  G  R  M  E  G  I  W  G  K  D  C  L  E  F  K  P  E  R  W  L  E  D  G  V  F  K  A  Q  C  P  F  K  Y  P  V  F  Q  G  G  V  R  V  C  L  G  K  D  L  S  I  V  E  M  K  S  V  A  L  A  L  I  R  Q  F  D  F  Q  V  H  L  A  K  D  Q  A  P  K  F  M  P  G  L  T  A  T  V  R  G  G  L  P  I  M  V  Q  K  R  R  E  Q  *  T  L  T  R  I  Q  D  L  E  S  V  L  Y  N  F  C  N  *  L  L  V  Y  T  S  I  F  *  L  A  F  *  A  *  S  K  L  N  Y  V  Y  I  D  D  *  R  Q  K  S  L  *  L  M  M  I  *  *  Q  N  C  S  K  K  Y   </first_frame>
            <second_frame>  S  V  R  F  A  K  A  I  *  T  L  H  G  L  *  S  S  K  I  F  A  I  G  T  L  I  Y  S  K  N  H  P  L  V  Q  Y  M  Y  T  F  L  E  M  S  L  H  Q  I  Q  T  T  L  N  T  C  L  K  Q  I  S  I  I  F  L  K  E  N  S  F  L  L  S  S  A  I  Y  *  A  E  E  F  S  P  *  T  A  K  C  G  S  F  N  G  R  W  Q  V  *  N  S  D  A  Y  R  Y  A  R  T  L  S  I  S  S  V  T  K  L  E  T  G  *  F  R  F  W  K  V  I  S  I  L  F  W  T  Y  K  M  F  Y  D  V  F  R  S  I  A  S  V  N  F  H  L  V  W  I  L  V  V  *  N  Y  H  Y  Q  I  Q  I  F  K  S  H  L  I  *  L  R  N  C  L  L  K  E  L  *  R  F  H  L  *  C  G  K  L  K  G  V  *  I  L  D  Q  K  R  S  *  K  K  R  S  K  K  L  M  Y  L  L  R  R  *  *  F  R  K  E  K  T  I  F  L  P  K  M  T  F  C  L  G  S  *  G  I  L  M  M  I  N  S  L  G  T  L  S  S  V  F  Y  W  R  V  E  T  L  L  R  P  D  *  L  L  F  F  G  Y  *  L  N  I  H  M  L  L  M  K  F  E  L  S  R  I  E  *  W  E  K  Q  *  M  E  L  *  L  L  S  K  E  F  G  K  C  I  F  *  L  Q  L  Y  M  R  V  L  G  Y  F  R  L  F  N  L  I  P  S  F  V  K  K  T  I  R  S  L  M  V  R  S  W  L  K  G  R  G  *  R  I  I  H  M  Q  W  G  G  W  R  V  F  G  V  K  I  V  *  N  S  S  Q  K  D  G  W  K  T  G  F  L  R  H  S  V  L  L  N  I  P  F  F  K  V  V  L  G  F  V  W  V  K  I  Y  L  L  W  K  *  R  V  L  L  W  L  *  L  G  N  S  T  F  K  F  I  W  L  K  T  R  H  L  S  S  C  R  D  *  Q  P  P  *  E  A  D  F  P  S  W  F  K  K  D  E  N  N  R  H  *  H  E  F  K  I  *  S  Q  Y  C  T  T  F  V  I  N  Y  *  F  I  L  L  S  F  S  *  R  F  R  L  R  A  S  *  T  M  C  I  *  T  T  N  V  K  K  A  Y  D  L  *  *  Y  N  N  K  I  V  Q  K  N  I  </second_frame>
            <third_frame>   V  *  D  L  Q  K  L  F  E  L  Y  M  V  F  R  V  Q  K  S  L  R  L  V  L  L  S  T  Q  K  I  T  H  W  Y  N  T  C  T  R  S  W  K  C  H  Y  I  K  S  K  Q  R  *  I  H  A  *  N  K  F  R  *  F  S  *  R  K  T  V  F  Y  Y  P  R  R  F  I  R  P  R  N  F  R  R  R  R  R  N  V  E  V  S  T  E  D  G  K  F  R  T  R  T  R  I  D  T  L  V  R  F  R  Y  R  Q  *  R  N  *  K  P  V  D  S  A  F  G  K  *  Y  P  Y  C  F  G  L  T  R  C  F  T  T  F  F  V  R  *  H  L  *  I  F  I  W  Y  G  S  W  L  F  E  I  I  I  T  R  F  R  S  S  R  V  I  *  F  S  F  E  I  V  C  *  K  S  Y  D  G  F  T  F  S  V  E  N  *  K  E  F  E  Y  W  I  R  K  E  A  K  R  S  D  R  K  S  *  C  T  C  *  G  G  N  N  S  E  K  K  K  R  F  F  F  P  K  *  R  F  V  *  V  H  E  E  Y  *  *  *  *  T  P  *  G  H  Y  R  Q  F  S  I  G  G  *  R  H  C  C  V  R  T  D  Y  F  F  L  A  T  S  S  T  S  T  C  Y  *  *  N  S  S  *  V  E  S  S  N  G  K  N  S  K  W  N  S  S  Y  F  R  R  N  S  G  N  A  F  F  D  C  S  Y  T  *  E  Y  *  A  I  S  A  C  S  I  *  F  Q  V  L  S  R  R  R  Y  A  P  *  W  Y  V  R  G  *  R  D  E  G  D  V  S  S  I  C  N  G  E  D  G  G  Y  L  G  *  R  L  F  R  I  Q  A  R  K  M  V  G  R  R  G  F  *  G  T  V  S  F  *  I  S  R  F  S  R  W  C  *  G  L  F  G  *  R  F  I  Y  C  G  N  E  E  C  C  F  G  F  D  *  A  I  R  L  S  S  S  F  G  *  R  P  G  T  *  V  H  A  G  I  D  S  H  R  E  R  R  T  S  H  H  G  S  K  K  T  R  T  I  D  T  D  T  N  S  R  F  R  V  S  I  V  Q  L  L  *  L  I  I  S  L  Y  F  Y  L  L  A  S  V  L  G  L  E  Q  A  E  L  C  V  Y  R  R  L  T  S  K  K  L  M  T  Y  D  D  I  I  T  K  L  F  K  K  I  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0099A03.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="5998" stop="7374"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1374</number_coding_nucleotides>
                  <number_encoded_amino_acids>458</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ECEICKSYLNSTWSLEFKNLCDWYSYLLKKSPTGTIHVHVLGNVITSNPNNVEYMLKTNFDNFPKGKQFSTILGDLLGRGIFAVDGEMWKFQRKMASLELGRVSIRSYAFDIVSDEIRNRLIPLLESNIHTVLDLQDVLRRFSFDSICKFSFGMDPGCLKLSLPDSDLQESFDLASKLSAERAMTVSPLVWKIKRSLNIGSEKKLKEAIEKVDVLAEEVIIQKRKNDFSSQNDVLSRFMRNIDDDKLLRDIIVSFLLAGRDTVASGLTTFFWLLAQHPHVINEIRAESNRVMGKTVNGTLATFEGIREMHFLTAAIHESIRLFPPVQFDSKFCQEDDTLPDGTFVAKGTRVTYHPYAMGRMEGIWGKDCLEFKPERWLEDGVFKAQCPFKYPVFQGGVRVCLGKDLSIVEMKSVALALIRQFDFQVHLAKDQAPKFMPGLTATVRGGLPIMVQKRREQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="15183" PGL_stop="14665"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="15183" e_stop="14665"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.967"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.967">
            <gDNA_exon_boundary e_start="15183" e_stop="14665" e_length="519"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15183" stop="14665"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205976" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACAAGAAGCACAAATAATCAATAGCAAATGTACGCAGCAAAAGAAGCCAAAATCGAGTCCAAGATCGAGTAAAATGGGTCAGCCAAGTAATCAAGAAAATAGAGTTATTTGTCAAAGCCAAAAATAATATATTAAAGGTATAAGTTGATACAAATAAGGAAAACTTTAAATATATTATTAAGGAAGGAAGTTGTATATAATAAGGATTGTACTTTAAAAGGGAATCCTTGTTTAATAATAACTTCCTTACCTTATCTGATAAGGACTGAAGGCAAAAGGAACTCTATAAGAAGAAGAAGACGCGTATGAAGAATACGACGACTTCACGCAGAGAACAAGGGAGAATTATTCATCAAATTGAAGTCTTCAAGGTTGATAGGATTACTACGTTTAAAACATTCTTGAGTAAGAAGGTTTTATCGTGTAGAACTATTTGTCTTGTTTTTGTTCTTAATTGTAGTTTACAGTTTATTGTACAAAGGGTGGGTTTGACTCTTTGTAGGGTTGAGTGTTAGTAAG</gDNA_template>
            <first_frame> T  R  S  T  N  N  Q  *  Q  M  Y  A  A  K  E  A  K  I  E  S  K  I  E  *  N  G  S  A  K  *  S  R  K  *  S  Y  L  S  K  P  K  I  I  Y  *  R  Y  K  L  I  Q  I  R  K  T  L  N  I  L  L  R  K  E  V  V  Y  N  K  D  C  T  L  K  G  N  P  C  L  I  I  T  S  L  P  Y  L  I  R  T  E  G  K  R  N  S  I  R  R  R  R  R  V  *  R  I  R  R  L  H  A  E  N  K  G  E  L  F  I  K  L  K  S  S  R  L  I  G  L  L  R  L  K  H  S  *  V  R  R  F  Y  R  V  E  L  F  V  L  F  L  F  L  I  V  V  Y  S  L  L  Y  K  G  W  V  *  L  F  V  G  L  S  V  S  K </first_frame>
            <second_frame>  Q  E  A  Q  I  I  N  S  K  C  T  Q  Q  K  K  P  K  S  S  P  R  S  S  K  M  G  Q  P  S  N  Q  E  N  R  V  I  C  Q  S  Q  K  *  Y  I  K  G  I  S  *  Y  K  *  G  K  L  *  I  Y  Y  *  G  R  K  L  Y  I  I  R  I  V  L  *  K  G  I  L  V  *  *  *  L  P  Y  L  I  *  *  G  L  K  A  K  G  T  L  *  E  E  E  D  A  Y  E  E  Y  D  D  F  T  Q  R  T  R  E  N  Y  S  S  N  *  S  L  Q  G  *  *  D  Y  Y  V  *  N  I  L  E  *  E  G  F  I  V  *  N  Y  L  S  C  F  C  S  *  L  *  F  T  V  Y  C  T  K  G  G  F  D  S  L  *  G  *  V  L  V   </second_frame>
            <third_frame>   K  K  H  K  *  S  I  A  N  V  R  S  K  R  S  Q  N  R  V  Q  D  R  V  K  W  V  S  Q  V  I  K  K  I  E  L  F  V  K  A  K  N  N  I  L  K  V  *  V  D  T  N  K  E  N  F  K  Y  I  I  K  E  G  S  C  I  *  *  G  L  Y  F  K  R  E  S  L  F  N  N  N  F  L  T  L  S  D  K  D  *  R  Q  K  E  L  Y  K  K  K  K  T  R  M  K  N  T  T  T  S  R  R  E  Q  G  R  I  I  H  Q  I  E  V  F  K  V  D  R  I  T  T  F  K  T  F  L  S  K  K  V  L  S  C  R  T  I  C  L  V  F  V  L  N  C  S  L  Q  F  I  V  Q  R  V  G  L  T  L  C  R  V  E  C  *  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0099A03.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="14914" stop="14669"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>243</number_coding_nucleotides>
                  <number_encoded_amino_acids>81</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RQKELYKKKKTRMKNTTTSRREQGRIIHQIEVFKVDRITTFKTFLSKKVLSCRTICLVFVLNCSLQFIVQRVGLTLCRVEC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="21313" PGL_stop="23521"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="21313" e_stop="21364"/>
            <exon e_start="21454" e_stop="21551"/>
            <exon e_start="22543" e_stop="23013"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.972" acc_prob="0.511" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="21313" e_stop="21364" e_length="52"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.993">
            <gDNA_intron_boundary i_start="21365" i_stop="21453" i_length="89"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="21454" e_stop="21551" e_length="98"/>
          </exon>
          <intron i_serial="2" don_prob="0.972" acc_prob="0.511">
            <gDNA_intron_boundary i_start="21552" i_stop="22542" i_length="991"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="22543" e_stop="23013" e_length="471"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21313" stop="21364"/>
              <exon start="21454" stop="21551"/>
              <exon start="22543" stop="23010"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202839" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21313" stop="21364"/>
              <exon start="21454" stop="21551"/>
              <exon start="22543" stop="22795"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E484503" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21313" stop="21364"/>
              <exon start="21454" stop="21551"/>
              <exon start="22543" stop="22709"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281328" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21314" stop="21364"/>
              <exon start="21454" stop="21551"/>
              <exon start="22543" stop="23009"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342645" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21314" stop="21364"/>
              <exon start="21454" stop="21551"/>
              <exon start="22543" stop="22980"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348359" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21314" stop="21364"/>
              <exon start="21454" stop="21551"/>
              <exon start="22543" stop="22870"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E468612" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21314" stop="21364"/>
              <exon start="21454" stop="21551"/>
              <exon start="22543" stop="22729"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341785" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21320" stop="21364"/>
              <exon start="21454" stop="21551"/>
              <exon start="22543" stop="23003"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713713" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21320" stop="21364"/>
              <exon start="21454" stop="21551"/>
              <exon start="22543" stop="22996"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E579007" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21320" stop="21364"/>
              <exon start="21454" stop="21551"/>
              <exon start="22543" stop="22979"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E587737" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21320" stop="21364"/>
              <exon start="21454" stop="21551"/>
              <exon start="22543" stop="22960"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E591521" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21320" stop="21364"/>
              <exon start="21454" stop="21551"/>
              <exon start="22543" stop="22948"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350664" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21321" stop="21364"/>
              <exon start="21454" stop="21551"/>
              <exon start="22543" stop="22910"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319689" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21321" stop="21364"/>
              <exon start="21454" stop="21551"/>
              <exon start="22543" stop="22850"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299139" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21321" stop="21364"/>
              <exon start="21454" stop="21551"/>
              <exon start="22543" stop="22827"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337288" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21322" stop="21364"/>
              <exon start="21454" stop="21551"/>
              <exon start="22543" stop="22773"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217161" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21326" stop="21364"/>
              <exon start="21454" stop="21551"/>
              <exon start="22543" stop="22960"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299241" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21326" stop="21364"/>
              <exon start="21454" stop="21551"/>
              <exon start="22543" stop="22918"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298611" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21327" stop="21364"/>
              <exon start="21454" stop="21551"/>
              <exon start="22543" stop="22968"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719458" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21329" stop="21364"/>
              <exon start="21454" stop="21551"/>
              <exon start="22543" stop="22955"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338599" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21329" stop="21364"/>
              <exon start="21454" stop="21551"/>
              <exon start="22543" stop="22754"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233821" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21329" stop="21364"/>
              <exon start="21454" stop="21551"/>
              <exon start="22543" stop="22735"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737294" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21329" stop="21364"/>
              <exon start="21454" stop="21551"/>
              <exon start="22543" stop="22735"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737389" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21329" stop="21364"/>
              <exon start="21454" stop="21551"/>
              <exon start="22543" stop="22735"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737454" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21329" stop="21364"/>
              <exon start="21454" stop="21551"/>
              <exon start="22543" stop="22735"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739739" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21329" stop="21364"/>
              <exon start="21454" stop="21551"/>
              <exon start="22543" stop="22735"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739965" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21329" stop="21364"/>
              <exon start="21454" stop="21551"/>
              <exon start="22543" stop="22735"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740804" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21330" stop="21364"/>
              <exon start="21454" stop="21551"/>
              <exon start="22543" stop="23007"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337526" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21330" stop="21364"/>
              <exon start="21454" stop="21551"/>
              <exon start="22543" stop="22972"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338453" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21330" stop="21364"/>
              <exon start="21454" stop="21551"/>
              <exon start="22543" stop="22972"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337215" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21331" stop="21364"/>
              <exon start="21454" stop="21551"/>
              <exon start="22543" stop="22972"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288779" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21332" stop="21364"/>
              <exon start="21454" stop="21551"/>
              <exon start="22543" stop="22953"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724098" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21335" stop="21364"/>
              <exon start="21454" stop="21551"/>
              <exon start="22543" stop="22988"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E557959" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21336" stop="21364"/>
              <exon start="21454" stop="21551"/>
              <exon start="22543" stop="22970"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E587548" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21337" stop="21364"/>
              <exon start="21454" stop="21551"/>
              <exon start="22543" stop="22820"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341231" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21341" stop="21364"/>
              <exon start="21454" stop="21551"/>
              <exon start="22543" stop="23004"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309727" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21341" stop="21364"/>
              <exon start="21454" stop="21551"/>
              <exon start="22543" stop="22954"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577681" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21345" stop="21364"/>
              <exon start="21454" stop="21551"/>
              <exon start="22543" stop="22962"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E456682" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21345" stop="21364"/>
              <exon start="21454" stop="21551"/>
              <exon start="22543" stop="22953"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713983" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21346" stop="21364"/>
              <exon start="21454" stop="21551"/>
              <exon start="22543" stop="22960"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306602" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21346" stop="21364"/>
              <exon start="21454" stop="21551"/>
              <exon start="22543" stop="22960"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321320" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21346" stop="21364"/>
              <exon start="21454" stop="21551"/>
              <exon start="22543" stop="22956"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321763" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21352" stop="21364"/>
              <exon start="21454" stop="21551"/>
              <exon start="22543" stop="22923"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286404" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21353" stop="21364"/>
              <exon start="21454" stop="21551"/>
              <exon start="22543" stop="22970"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E576211" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21359" stop="21364"/>
              <exon start="21454" stop="21551"/>
              <exon start="22543" stop="22960"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E605757" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21463" stop="21551"/>
              <exon start="22543" stop="22960"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E560618" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21478" stop="21551"/>
              <exon start="22543" stop="22960"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351964" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21479" stop="21551"/>
              <exon start="22543" stop="22970"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E219736" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21486" stop="21551"/>
              <exon start="22543" stop="22960"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712768" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21490" stop="21551"/>
              <exon start="22543" stop="22994"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E568988" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21515" stop="21551"/>
              <exon start="22543" stop="22960"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225474" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21528" stop="21551"/>
              <exon start="22543" stop="22960"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222996" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22553" stop="22904"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E223361" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22554" stop="22980"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352874" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22554" stop="22980"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353175" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22560" stop="22972"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349710" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22560" stop="22972"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357570" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22565" stop="22970"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E219976" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22570" stop="22960"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229171" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22585" stop="22960"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216474" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22634" stop="22960"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228691" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22646" stop="23013"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234186" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22753" stop="22960"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230429" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22753" stop="22960"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230929" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCAGCACTAAAGGTCCGCCATTCGGAGGCTCACTTTGCTTAAAATCTCCACA : AGAAGAGAAGATGAAGGTTATCGCCGCTTACTTGTTGGCCGTCTTGGGTGGCAACACCTCCCCTTCAGAGAAGGATTTGAAGAAAATCCTTGCATCTG : TTGGAGCTGAGGCTGATGATGATAGGATTCAACTACTACTCTCTCAAGTTGAGGGCAAAGATATCACTGAGTTGATTGCTGCCGGCAGAGAAAAATTGGCTTCAGTACCTGCTGGTGGAGGTGCTGCTTGTGCAGTTGCTGCACCTGGTGGTGGCGGTGCTGCACCTGCTGCTGAGGAGAAGAAGGAAGAAAAGAAAGTGGAAGAAAAAGAAGAGTCAGACGATGACATGGGTTTCAGTCTTTTCGATTAGAAGTCGAAGAAATCAGTTTATGAAGTATCCCCTTTTCCATTTGTTGTTCCCCTTGAGAGTGTATTTTAGGAGGTTTATTGTCTACTTACAGATTTTGCTTGAACTTAGAATTTTCATGGAAAACATTTGCAAACAGTTGAAATTATAATATGTATTTCAAATGTTCAGCTTGGTTCAATATATCTACCCTTTTTGATCTTACAATATTAAAACAATGGCT</gDNA_template>
            <first_frame> A  A  L  K  V  R  H  S  E  A  H  F  A  *  N  L  H   : K  K  R  R  *  R  L  S  P  L  T  C  W  P  S  W  V  A  T  P  P  L  Q  R  R  I  *  R  K  S  L  H  L  :  L  E  L  R  L  M  M  I  G  F  N  Y  Y  S  L  K  L  R  A  K  I  S  L  S  *  L  L  P  A  E  K  N  W  L  Q  Y  L  L  V  E  V  L  L  V  Q  L  L  H  L  V  V  A  V  L  H  L  L  L  R  R  R  R  K  K  R  K  W  K  K  K  K  S  Q  T  M  T  W  V  S  V  F  S  I  R  S  R  R  N  Q  F  M  K  Y  P  L  F  H  L  L  F  P  L  R  V  Y  F  R  R  F  I  V  Y  L  Q  I  L  L  E  L  R  I  F  M  E  N  I  C  K  Q  L  K  L  *  Y  V  F  Q  M  F  S  L  V  Q  Y  I  Y  P  F  *  S  Y  N  I  K  T  M  A </first_frame>
            <second_frame>  Q  H  *  R  S  A  I  R  R  L  T  L  L  K  I  S  T  :  R  R  E  D  E  G  Y  R  R  L  L  V  G  R  L  G  W  Q  H  L  P  F  R  E  G  F  E  E  N  P  C  I  C :   W  S  *  G  *  *  *  *  D  S  T  T  T  L  S  S  *  G  Q  R  Y  H  *  V  D  C  C  R  Q  R  K  I  G  F  S  T  C  W  W  R  C  C  L  C  S  C  C  T  W  W  W  R  C  C  T  C  C  *  G  E  E  G  R  K  E  S  G  R  K  R  R  V  R  R  *  H  G  F  Q  S  F  R  L  E  V  E  E  I  S  L  *  S  I  P  F  S  I  C  C  S  P  *  E  C  I  L  G  G  L  L  S  T  Y  R  F  C  L  N  L  E  F  S  W  K  T  F  A  N  S  *  N  Y  N  M  Y  F  K  C  S  A  W  F  N  I  S  T  L  F  D  L  T  I  L  K  Q  W   </second_frame>
            <third_frame>   S  T  K  G  P  P  F  G  G  S  L  C  L  K  S  P  Q :   E  E  K  M  K  V  I  A  A  Y  L  L  A  V  L  G  G  N  T  S  P  S  E  K  D  L  K  K  I  L  A  S   : V  G  A  E  A  D  D  D  R  I  Q  L  L  L  S  Q  V  E  G  K  D  I  T  E  L  I  A  A  G  R  E  K  L  A  S  V  P  A  G  G  G  A  A  C  A  V  A  A  P  G  G  G  G  A  A  P  A  A  E  E  K  K  E  E  K  K  V  E  E  K  E  E  S  D  D  D  M  G  F  S  L  F  D  *  K  S  K  K  S  V  Y  E  V  S  P  F  P  F  V  V  P  L  E  S  V  F  *  E  V  Y  C  L  L  T  D  F  A  *  T  *  N  F  H  G  K  H  L  Q  T  V  E  I  I  I  C  I  S  N  V  Q  L  G  S  I  Y  L  P  F  L  I  L  Q  Y  *  N  N  G  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0099A03.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="21315" stop="21364"/>
                    <exon start="21454" stop="21551"/>
                    <exon start="22543" stop="22793"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>396</number_coding_nucleotides>
                  <number_encoded_amino_acids>132</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>STKGPPFGGSLCLKSPQEEKMKVIAAYLLAVLGGNTSPSEKDLKKILASVGAEADDDRIQLLLSQVEGKDITELIAAGREKLASVPAGGGAACAVAAPGGGGAAPAAEEKKEEKKVEEKEESDDDMGFSLFD*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0099A03.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="22618" stop="22941"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>321</number_coding_nucleotides>
                  <number_encoded_amino_acids>107</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLPAEKNWLQYLLVEVLLVQLLHLVVAVLHLLLRRRRKKRKWKKKKSQTMTWVSVFSIRSRRNQFMKYPLFHLLFPLRVYFRRFIVYLQILLELRIFMENICKQLKL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="21313" e_stop="21364"/>
            <exon e_start="21454" e_stop="21551"/>
            <exon e_start="22543" e_stop="22959"/>
            <exon e_start="23503" e_stop="23521"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.972" acc_prob="0.511" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.842"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="21313" e_stop="21364" e_length="52"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.993">
            <gDNA_intron_boundary i_start="21365" i_stop="21453" i_length="89"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="21454" e_stop="21551" e_length="98"/>
          </exon>
          <intron i_serial="2" don_prob="0.972" acc_prob="0.511">
            <gDNA_intron_boundary i_start="21552" i_stop="22542" i_length="991"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="22543" e_stop="22959" e_length="417"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="22960" i_stop="23502" i_length="543"/>
          </intron>
          <exon e_serial="4" e_score="0.842">
            <gDNA_exon_boundary e_start="23503" e_stop="23521" e_length="19"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21313" stop="21364"/>
              <exon start="21454" stop="21551"/>
              <exon start="22543" stop="22795"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E484503" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21313" stop="21364"/>
              <exon start="21454" stop="21551"/>
              <exon start="22543" stop="22709"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281328" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21314" stop="21364"/>
              <exon start="21454" stop="21551"/>
              <exon start="22543" stop="22870"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E468612" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21314" stop="21364"/>
              <exon start="21454" stop="21551"/>
              <exon start="22543" stop="22729"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341785" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21320" stop="21364"/>
              <exon start="21454" stop="21551"/>
              <exon start="22543" stop="22948"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350664" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21321" stop="21364"/>
              <exon start="21454" stop="21551"/>
              <exon start="22543" stop="22910"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319689" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21321" stop="21364"/>
              <exon start="21454" stop="21551"/>
              <exon start="22543" stop="22850"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299139" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21321" stop="21364"/>
              <exon start="21454" stop="21551"/>
              <exon start="22543" stop="22827"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337288" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21322" stop="21364"/>
              <exon start="21454" stop="21551"/>
              <exon start="22543" stop="22773"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217161" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21326" stop="21364"/>
              <exon start="21454" stop="21551"/>
              <exon start="22543" stop="22918"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298611" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21329" stop="21364"/>
              <exon start="21454" stop="21551"/>
              <exon start="22543" stop="22955"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338599" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21329" stop="21364"/>
              <exon start="21454" stop="21551"/>
              <exon start="22543" stop="22754"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233821" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21329" stop="21364"/>
              <exon start="21454" stop="21551"/>
              <exon start="22543" stop="22735"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737294" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21329" stop="21364"/>
              <exon start="21454" stop="21551"/>
              <exon start="22543" stop="22735"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737389" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21329" stop="21364"/>
              <exon start="21454" stop="21551"/>
              <exon start="22543" stop="22735"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737454" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21329" stop="21364"/>
              <exon start="21454" stop="21551"/>
              <exon start="22543" stop="22735"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739739" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21329" stop="21364"/>
              <exon start="21454" stop="21551"/>
              <exon start="22543" stop="22735"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739965" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21329" stop="21364"/>
              <exon start="21454" stop="21551"/>
              <exon start="22543" stop="22735"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740804" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21332" stop="21364"/>
              <exon start="21454" stop="21551"/>
              <exon start="22543" stop="22953"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724098" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21337" stop="21364"/>
              <exon start="21454" stop="21551"/>
              <exon start="22543" stop="22820"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341231" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21341" stop="21364"/>
              <exon start="21454" stop="21551"/>
              <exon start="22543" stop="22954"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577681" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21345" stop="21364"/>
              <exon start="21454" stop="21551"/>
              <exon start="22543" stop="22953"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713983" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21346" stop="21364"/>
              <exon start="21454" stop="21551"/>
              <exon start="22543" stop="22956"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321763" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21352" stop="21364"/>
              <exon start="21454" stop="21551"/>
              <exon start="22543" stop="22923"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286404" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21493" stop="21551"/>
              <exon start="22543" stop="22959"/>
              <exon start="23503" stop="23521"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225875" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22553" stop="22904"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E223361" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCAGCACTAAAGGTCCGCCATTCGGAGGCTCACTTTGCTTAAAATCTCCACA : AGAAGAGAAGATGAAGGTTATCGCCGCTTACTTGTTGGCCGTCTTGGGTGGCAACACCTCCCCTTCAGAGAAGGATTTGAAGAAAATCCTTGCATCTG : TTGGAGCTGAGGCTGATGATGATAGGATTCAACTACTACTCTCTCAAGTTGAGGGCAAAGATATCACTGAGTTGATTGCTGCCGGCAGAGAAAAATTGGCTTCAGTACCTGCTGGTGGAGGTGCTGCTTGTGCAGTTGCTGCACCTGGTGGTGGCGGTGCTGCACCTGCTGCTGAGGAGAAGAAGGAAGAAAAGAAAGTGGAAGAAAAAGAAGAGTCAGACGATGACATGGGTTTCAGTCTTTTCGATTAGAAGTCGAAGAAATCAGTTTATGAAGTATCCCCTTTTCCATTTGTTGTTCCCCTTGAGAGTGTATTTTAGGAGGTTTATTGTCTACTTACAGATTTTGCTTGAACTTAGAATTTTCATGGAAAACATTTGCAAACAGTTGAAATTATAATATGTATTTCAAATGTTC : CAAAAAAATAAATAAAAAT</gDNA_template>
            <first_frame> A  A  L  K  V  R  H  S  E  A  H  F  A  *  N  L  H   : K  K  R  R  *  R  L  S  P  L  T  C  W  P  S  W  V  A  T  P  P  L  Q  R  R  I  *  R  K  S  L  H  L  :  L  E  L  R  L  M  M  I  G  F  N  Y  Y  S  L  K  L  R  A  K  I  S  L  S  *  L  L  P  A  E  K  N  W  L  Q  Y  L  L  V  E  V  L  L  V  Q  L  L  H  L  V  V  A  V  L  H  L  L  L  R  R  R  R  K  K  R  K  W  K  K  K  K  S  Q  T  M  T  W  V  S  V  F  S  I  R  S  R  R  N  Q  F  M  K  Y  P  L  F  H  L  L  F  P  L  R  V  Y  F  R  R  F  I  V  Y  L  Q  I  L  L  E  L  R  I  F  M  E  N  I  C  K  Q  L  K  L  *  Y  V  F  Q  M  F  :  Q  K  N  K  *  K  </first_frame>
            <second_frame>  Q  H  *  R  S  A  I  R  R  L  T  L  L  K  I  S  T  :  R  R  E  D  E  G  Y  R  R  L  L  V  G  R  L  G  W  Q  H  L  P  F  R  E  G  F  E  E  N  P  C  I  C :   W  S  *  G  *  *  *  *  D  S  T  T  T  L  S  S  *  G  Q  R  Y  H  *  V  D  C  C  R  Q  R  K  I  G  F  S  T  C  W  W  R  C  C  L  C  S  C  C  T  W  W  W  R  C  C  T  C  C  *  G  E  E  G  R  K  E  S  G  R  K  R  R  V  R  R  *  H  G  F  Q  S  F  R  L  E  V  E  E  I  S  L  *  S  I  P  F  S  I  C  C  S  P  *  E  C  I  L  G  G  L  L  S  T  Y  R  F  C  L  N  L  E  F  S  W  K  T  F  A  N  S  *  N  Y  N  M  Y  F  K  C  S :   K  K  I  N  K  N </second_frame>
            <third_frame>   S  T  K  G  P  P  F  G  G  S  L  C  L  K  S  P  Q :   E  E  K  M  K  V  I  A  A  Y  L  L  A  V  L  G  G  N  T  S  P  S  E  K  D  L  K  K  I  L  A  S   : V  G  A  E  A  D  D  D  R  I  Q  L  L  L  S  Q  V  E  G  K  D  I  T  E  L  I  A  A  G  R  E  K  L  A  S  V  P  A  G  G  G  A  A  C  A  V  A  A  P  G  G  G  G  A  A  P  A  A  E  E  K  K  E  E  K  K  V  E  E  K  E  E  S  D  D  D  M  G  F  S  L  F  D  *  K  S  K  K  S  V  Y  E  V  S  P  F  P  F  V  V  P  L  E  S  V  F  *  E  V  Y  C  L  L  T  D  F  A  *  T  *  N  F  H  G  K  H  L  Q  T  V  E  I  I  I  C  I  S  N  V   : P  K  K  *  I  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0099A03.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="21315" stop="21364"/>
                    <exon start="21454" stop="21551"/>
                    <exon start="22543" stop="22793"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>396</number_coding_nucleotides>
                  <number_encoded_amino_acids>132</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>STKGPPFGGSLCLKSPQEEKMKVIAAYLLAVLGGNTSPSEKDLKKILASVGAEADDDRIQLLLSQVEGKDITELIAAGREKLASVPAGGGAACAVAAPGGGGAAPAAEEKKEEKKVEEKEESDDDMGFSLFD*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0099A03.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="22618" stop="22941"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>321</number_coding_nucleotides>
                  <number_encoded_amino_acids>107</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLPAEKNWLQYLLVEVLLVQLLHLVVAVLHLLLRRRRKKRKWKKKKSQTMTWVSVFSIRSRRNQFMKYPLFHLLFPLRVYFRRFIVYLQILLELRIFMENICKQLKL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="21315" e_stop="21324"/>
            <exon e_start="21454" e_stop="21551"/>
            <exon e_start="22543" e_stop="23013"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.972" acc_prob="0.511" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="21315" e_stop="21324" e_length="10"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.993">
            <gDNA_intron_boundary i_start="21325" i_stop="21453" i_length="129"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="21454" e_stop="21551" e_length="98"/>
          </exon>
          <intron i_serial="2" don_prob="0.972" acc_prob="0.511">
            <gDNA_intron_boundary i_start="21552" i_stop="22542" i_length="991"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="22543" e_stop="23013" e_length="471"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21315" stop="21324"/>
              <exon start="21454" stop="21551"/>
              <exon start="22543" stop="22981"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312512" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21315" stop="21324"/>
              <exon start="21454" stop="21551"/>
              <exon start="22543" stop="22963"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312509" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21463" stop="21551"/>
              <exon start="22543" stop="22960"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E560618" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21478" stop="21551"/>
              <exon start="22543" stop="22960"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351964" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21479" stop="21551"/>
              <exon start="22543" stop="22970"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E219736" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21486" stop="21551"/>
              <exon start="22543" stop="22960"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712768" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21490" stop="21551"/>
              <exon start="22543" stop="22994"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E568988" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21515" stop="21551"/>
              <exon start="22543" stop="22960"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225474" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21528" stop="21551"/>
              <exon start="22543" stop="22960"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222996" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22553" stop="22904"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E223361" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22554" stop="22980"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352874" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22554" stop="22980"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353175" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22560" stop="22972"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349710" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22560" stop="22972"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357570" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22565" stop="22970"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E219976" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22570" stop="22960"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229171" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22585" stop="22960"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216474" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22634" stop="22960"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228691" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22646" stop="23013"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234186" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22753" stop="22960"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230429" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22753" stop="22960"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230929" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGCACTAAAG : AGAAGAGAAGATGAAGGTTATCGCCGCTTACTTGTTGGCCGTCTTGGGTGGCAACACCTCCCCTTCAGAGAAGGATTTGAAGAAAATCCTTGCATCTG : TTGGAGCTGAGGCTGATGATGATAGGATTCAACTACTACTCTCTCAAGTTGAGGGCAAAGATATCACTGAGTTGATTGCTGCCGGCAGAGAAAAATTGGCTTCAGTACCTGCTGGTGGAGGTGCTGCTTGTGCAGTTGCTGCACCTGGTGGTGGCGGTGCTGCACCTGCTGCTGAGGAGAAGAAGGAAGAAAAGAAAGTGGAAGAAAAAGAAGAGTCAGACGATGACATGGGTTTCAGTCTTTTCGATTAGAAGTCGAAGAAATCAGTTTATGAAGTATCCCCTTTTCCATTTGTTGTTCCCCTTGAGAGTGTATTTTAGGAGGTTTATTGTCTACTTACAGATTTTGCTTGAACTTAGAATTTTCATGGAAAACATTTGCAAACAGTTGAAATTATAATATGTATTTCAAATGTTCAGCTTGGTTCAATATATCTACCCTTTTTGATCTTACAATATTAAAACAATGGCT</gDNA_template>
            <first_frame> S  T  K   : E  K  R  R  *  R  L  S  P  L  T  C  W  P  S  W  V  A  T  P  P  L  Q  R  R  I  *  R  K  S  L  H  L  :  L  E  L  R  L  M  M  I  G  F  N  Y  Y  S  L  K  L  R  A  K  I  S  L  S  *  L  L  P  A  E  K  N  W  L  Q  Y  L  L  V  E  V  L  L  V  Q  L  L  H  L  V  V  A  V  L  H  L  L  L  R  R  R  R  K  K  R  K  W  K  K  K  K  S  Q  T  M  T  W  V  S  V  F  S  I  R  S  R  R  N  Q  F  M  K  Y  P  L  F  H  L  L  F  P  L  R  V  Y  F  R  R  F  I  V  Y  L  Q  I  L  L  E  L  R  I  F  M  E  N  I  C  K  Q  L  K  L  *  Y  V  F  Q  M  F  S  L  V  Q  Y  I  Y  P  F  *  S  Y  N  I  K  T  M  A </first_frame>
            <second_frame>  A  L  K  :  R  R  E  D  E  G  Y  R  R  L  L  V  G  R  L  G  W  Q  H  L  P  F  R  E  G  F  E  E  N  P  C  I  C :   W  S  *  G  *  *  *  *  D  S  T  T  T  L  S  S  *  G  Q  R  Y  H  *  V  D  C  C  R  Q  R  K  I  G  F  S  T  C  W  W  R  C  C  L  C  S  C  C  T  W  W  W  R  C  C  T  C  C  *  G  E  E  G  R  K  E  S  G  R  K  R  R  V  R  R  *  H  G  F  Q  S  F  R  L  E  V  E  E  I  S  L  *  S  I  P  F  S  I  C  C  S  P  *  E  C  I  L  G  G  L  L  S  T  Y  R  F  C  L  N  L  E  F  S  W  K  T  F  A  N  S  *  N  Y  N  M  Y  F  K  C  S  A  W  F  N  I  S  T  L  F  D  L  T  I  L  K  Q  W   </second_frame>
            <third_frame>   H  *  R :   E  E  K  M  K  V  I  A  A  Y  L  L  A  V  L  G  G  N  T  S  P  S  E  K  D  L  K  K  I  L  A  S   : V  G  A  E  A  D  D  D  R  I  Q  L  L  L  S  Q  V  E  G  K  D  I  T  E  L  I  A  A  G  R  E  K  L  A  S  V  P  A  G  G  G  A  A  C  A  V  A  A  P  G  G  G  G  A  A  P  A  A  E  E  K  K  E  E  K  K  V  E  E  K  E  E  S  D  D  D  M  G  F  S  L  F  D  *  K  S  K  K  S  V  Y  E  V  S  P  F  P  F  V  V  P  L  E  S  V  F  *  E  V  Y  C  L  L  T  D  F  A  *  T  *  N  F  H  G  K  H  L  Q  T  V  E  I  I  I  C  I  S  N  V  Q  L  G  S  I  Y  L  P  F  L  I  L  Q  Y  *  N  N  G  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0099A03.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="21323" stop="21324"/>
                    <exon start="21454" stop="21551"/>
                    <exon start="22543" stop="22793"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>348</number_coding_nucleotides>
                  <number_encoded_amino_acids>116</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>REEKMKVIAAYLLAVLGGNTSPSEKDLKKILASVGAEADDDRIQLLLSQVEGKDITELIAAGREKLASVPAGGGAACAVAAPGGGGAAPAAEEKKEEKKVEEKEESDDDMGFSLFD*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0099A03.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="22618" stop="22941"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>321</number_coding_nucleotides>
                  <number_encoded_amino_acids>107</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLPAEKNWLQYLLVEVLLVQLLHLVVAVLHLLLRRRRKKRKWKKKKSQTMTWVSVFSIRSRRNQFMKYPLFHLLFPLRVYFRRFIVYLQILLELRIFMENICKQLKL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="23450" PGL_stop="22537"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="23450" e_stop="23435"/>
            <exon e_start="22954" e_stop="22772"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.198" acc_prob="0.000" e_score="0.625"/>
          <exon-only e_score="0.913"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.625">
            <gDNA_exon_boundary e_start="23450" e_stop="23435" e_length="16"/>
          </exon>
          <intron i_serial="1" don_prob="0.198" acc_prob="0.000">
            <gDNA_intron_boundary i_start="23434" i_stop="22955" i_length="480"/>
          </intron>
          <exon e_serial="2" e_score="0.913">
            <gDNA_exon_boundary e_start="22954" e_stop="22772" e_length="183"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23450" stop="23435"/>
              <exon start="22954" stop="22772"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E223660" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCTTGGCTTTTCTTT : TTTGAAATACATATTATAATTTCAACTGTTTGCAAATGTTTTCCATGAAAATTCTAAGTTCAAGCAAAATCTGTAAGTAGACAATAAACCTCCTAAAATACACTCTCAAGGGGAACAACAAATGGAAAAGGGGATACTTCATAAACTGATTTCTTCGACTTCTAATCGAAAAGACTGAAACCC</gDNA_template>
            <first_frame> F  L  A  F  L   : F  *  N  T  Y  Y  N  F  N  C  L  Q  M  F  S  M  K  I  L  S  S  S  K  I  C  K  *  T  I  N  L  L  K  Y  T  L  K  G  N  N  K  W  K  R  G  Y  F  I  N  *  F  L  R  L  L  I  E  K  T  E  T  </first_frame>
            <second_frame>  S  W  L  F  F  :  F  E  I  H  I  I  I  S  T  V  C  K  C  F  P  *  K  F  *  V  Q  A  K  S  V  S  R  Q  *  T  S  *  N  T  L  S  R  G  T  T  N  G  K  G  D  T  S  *  T  D  F  F  D  F  *  S  K  R  L  K  P </second_frame>
            <third_frame>   L  G  F  S  F :   L  K  Y  I  L  *  F  Q  L  F  A  N  V  F  H  E  N  S  K  F  K  Q  N  L  *  V  D  N  K  P  P  K  I  H  S  Q  G  E  Q  Q  M  E  K  G  I  L  H  K  L  I  S  S  T  S  N  R  K  D  *  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06SLm0099A03.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="22972" e_stop="22537"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.904"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.904">
            <gDNA_exon_boundary e_start="22972" e_stop="22537" e_length="436"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22972" stop="22537"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E604425" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTGAACCAAGCTGAACATTTGAAATACATATTATAATTTCAACTGTTTGCAAATGTTTTCCATGAAAATTCTAAGTTCAAGCAAAATCTGTAAGTAGACAATAAACCTCCTAAAATACACTCTCAAGGGGAACAACAAATGGAAAAGGGGATACTTCATAAACTGATTTCTTCGACTTCTAATCGAAAAGACTGAAACCCATGTCATCGTCTGACTCTTCTTTTTCTTCCACTTTCTTTTCTTCCTTCTTCTCCTCAGCAGCAGGTGCAGCACCGCCACCACCAGGTGCAGCAACTGCACAAGCAGCACCTCCACCAGCAGGTACTGAAGCCAATTTTTCTCTGCCGGCAGCAATCAACTCAGTGATATCTTTGCCCTCAACTTGAGAGAGTAGTAGTTGAATCCTATCATCATCAGCCTCAGCTCCAACTGCAG</gDNA_template>
            <first_frame> I  E  P  S  *  T  F  E  I  H  I  I  I  S  T  V  C  K  C  F  P  *  K  F  *  V  Q  A  K  S  V  S  R  Q  *  T  S  *  N  T  L  S  R  G  T  T  N  G  K  G  D  T  S  *  T  D  F  F  D  F  *  S  K  R  L  K  P  M  S  S  S  D  S  S  F  S  S  T  F  F  S  S  F  F  S  S  A  A  G  A  A  P  P  P  P  G  A  A  T  A  Q  A  A  P  P  P  A  G  T  E  A  N  F  S  L  P  A  A  I  N  S  V  I  S  L  P  S  T  *  E  S  S  S  *  I  L  S  S  S  A  S  A  P  T  A  </first_frame>
            <second_frame>  L  N  Q  A  E  H  L  K  Y  I  L  *  F  Q  L  F  A  N  V  F  H  E  N  S  K  F  K  Q  N  L  *  V  D  N  K  P  P  K  I  H  S  Q  G  E  Q  Q  M  E  K  G  I  L  H  K  L  I  S  S  T  S  N  R  K  D  *  N  P  C  H  R  L  T  L  L  F  L  P  L  S  F  L  P  S  S  P  Q  Q  Q  V  Q  H  R  H  H  Q  V  Q  Q  L  H  K  Q  H  L  H  Q  Q  V  L  K  P  I  F  L  C  R  Q  Q  S  T  Q  *  Y  L  C  P  Q  L  E  R  V  V  V  E  S  Y  H  H  Q  P  Q  L  Q  L  Q </second_frame>
            <third_frame>   *  T  K  L  N  I  *  N  T  Y  Y  N  F  N  C  L  Q  M  F  S  M  K  I  L  S  S  S  K  I  C  K  *  T  I  N  L  L  K  Y  T  L  K  G  N  N  K  W  K  R  G  Y  F  I  N  *  F  L  R  L  L  I  E  K  T  E  T  H  V  I  V  *  L  F  F  F  F  H  F  L  F  F  L  L  L  L  S  S  R  C  S  T  A  T  T  R  C  S  N  C  T  S  S  T  S  T  S  R  Y  *  S  Q  F  F  S  A  G  S  N  Q  L  S  D  I  F  A  L  N  L  R  E  *  *  L  N  P  I  I  I  S  L  S  S  N  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0099A03.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="22789" stop="22586"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SKRLKPMSSSDSSFSSTFFSSFFSSAAGAAPPPPGAATAQAAPPPAGTEANFSLPAAINSVISLPST*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="25383" PGL_stop="25964"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="25383" e_stop="25964"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="25383" e_stop="25964" e_length="582"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25383" stop="25964"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330557" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAATCCAAAGTAGCAATTTTCGGTAAAGAATTACTCACGGTGCATACGATGGATGCTTCCGCCGCAGCGCGGCCACCTTTGGCTACCCACTTGCAACCATCACATTCTCAGGTATATATAACTGCCGACAATCTCCGCACGTTCTCCGACTCCCTCACGGCTTTCCAACAATGCTTGAATGATCTGCAACGACACATGAATTCAATACAAACCTCAATCAACTCTATGCTGCTTCCCCCTCAATCTTTACCTGCCTCATCATCATCACCAGCAGTTGCAACCCCAGCCCCGGCCCTGGCCCCTGAGCCAGAATCATCTTGGGACTCTGACCCCTCTGAAGACCTAGAAGAAGAAGAAGAAGTCAACCAAGAGGAGAAAGTAGTGAAGGGAGAGGGAGGCGAGGAAGTGAATTCGCCTCACTTAGAACTGAAATTGCCTCCTTCAGAACTGAAATCGCCTCGTTTGGAACTGCAATTGCCTCCTTCAGAACTGAAATCGCCTCGTTTGGAACTGCAATTGCCTCCTTCAGAACTGAAATCGCCTCGTTTGGAACTGAAATTGCCTCCTTCAGAACTGAAATC</gDNA_template>
            <first_frame> K  I  Q  S  S  N  F  R  *  R  I  T  H  G  A  Y  D  G  C  F  R  R  S  A  A  T  F  G  Y  P  L  A  T  I  T  F  S  G  I  Y  N  C  R  Q  S  P  H  V  L  R  L  P  H  G  F  P  T  M  L  E  *  S  A  T  T  H  E  F  N  T  N  L  N  Q  L  Y  A  A  S  P  S  I  F  T  C  L  I  I  I  T  S  S  C  N  P  S  P  G  P  G  P  *  A  R  I  I  L  G  L  *  P  L  *  R  P  R  R  R  R  R  S  Q  P  R  G  E  S  S  E  G  R  G  R  R  G  S  E  F  A  S  L  R  T  E  I  A  S  F  R  T  E  I  A  S  F  G  T  A  I  A  S  F  R  T  E  I  A  S  F  G  T  A  I  A  S  F  R  T  E  I  A  S  F  G  T  E  I  A  S  F  R  T  E  I </first_frame>
            <second_frame>  K  S  K  V  A  I  F  G  K  E  L  L  T  V  H  T  M  D  A  S  A  A  A  R  P  P  L  A  T  H  L  Q  P  S  H  S  Q  V  Y  I  T  A  D  N  L  R  T  F  S  D  S  L  T  A  F  Q  Q  C  L  N  D  L  Q  R  H  M  N  S  I  Q  T  S  I  N  S  M  L  L  P  P  Q  S  L  P  A  S  S  S  S  P  A  V  A  T  P  A  P  A  L  A  P  E  P  E  S  S  W  D  S  D  P  S  E  D  L  E  E  E  E  E  V  N  Q  E  E  K  V  V  K  G  E  G  G  E  E  V  N  S  P  H  L  E  L  K  L  P  P  S  E  L  K  S  P  R  L  E  L  Q  L  P  P  S  E  L  K  S  P  R  L  E  L  Q  L  P  P  S  E  L  K  S  P  R  L  E  L  K  L  P  P  S  E  L  K   </second_frame>
            <third_frame>   N  P  K  *  Q  F  S  V  K  N  Y  S  R  C  I  R  W  M  L  P  P  Q  R  G  H  L  W  L  P  T  C  N  H  H  I  L  R  Y  I  *  L  P  T  I  S  A  R  S  P  T  P  S  R  L  S  N  N  A  *  M  I  C  N  D  T  *  I  Q  Y  K  P  Q  S  T  L  C  C  F  P  L  N  L  Y  L  P  H  H  H  H  Q  Q  L  Q  P  Q  P  R  P  W  P  L  S  Q  N  H  L  G  T  L  T  P  L  K  T  *  K  K  K  K  K  S  T  K  R  R  K  *  *  R  E  R  E  A  R  K  *  I  R  L  T  *  N  *  N  C  L  L  Q  N  *  N  R  L  V  W  N  C  N  C  L  L  Q  N  *  N  R  L  V  W  N  C  N  C  L  L  Q  N  *  N  R  L  V  W  N  *  N  C  L  L  Q  N  *  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0099A03.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25384" stop="25962"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>579</number_coding_nucleotides>
                  <number_encoded_amino_acids>193</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KSKVAIFGKELLTVHTMDASAAARPPLATHLQPSHSQVYITADNLRTFSDSLTAFQQCLNDLQRHMNSIQTSINSMLLPPQSLPASSSSPAVATPAPALAPEPESSWDSDPSEDLEEEEEVNQEEKVVKGEGGEEVNSPHLELKLPPSELKSPRLELQLPPSELKSPRLELQLPPSELKSPRLELKLPPSELK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="26379" PGL_stop="26934"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="26379" e_stop="26934"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="26379" e_stop="26934" e_length="556"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26379" stop="26934"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331893" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACCTTTGGGTCGGGGAAGGAAGGCTAAAGTATTGATTTTGGAGTGCTTGTTGTTAATGATTGGAATCTACGATAAGGAAATCGAGCTTGAGAATTGGGTGAAGGAAGAGGCGGAGCATACAGCTTTAGCATGGTTGGAGAGGATGAATTCTGAAGGAGGAAAGCCTCAAGAAATCGATGCCCGAGGTTTGCTCTTCTTTATTGGGGGTTTTGGGATTCCAGATCAATTTACAAATGCGAATATCAGAAATTTGTTTCAGGTAAGTAACCTTAAGTGGAGTTGTGATGCACTCAAACGATCAAACGCTCTCTTGGCGAAGCTTCCAGAAATAATAGAGGAAATGGTGGCAAACAAGGCAGTAGTTAAAGCTGTTCATATTGTCTATAGTGTTGGAATGCAGGAGATATTTAACCCTAGGACACTTTTAACAACATTTATAAGAGAGTGTAAGAAATCATTTGATAACATGAATGGATCACAAAGTGCACATCAAGGGAATATTGTAGCAAAAGGGAAGTACTTAGGTGATCTGAGATCGATCATCAAATGTTTGAGA</gDNA_template>
            <first_frame> T  F  G  S  G  K  E  G  *  S  I  D  F  G  V  L  V  V  N  D  W  N  L  R  *  G  N  R  A  *  E  L  G  E  G  R  G  G  A  Y  S  F  S  M  V  G  E  D  E  F  *  R  R  K  A  S  R  N  R  C  P  R  F  A  L  L  Y  W  G  F  W  D  S  R  S  I  Y  K  C  E  Y  Q  K  F  V  S  G  K  *  P  *  V  E  L  *  C  T  Q  T  I  K  R  S  L  G  E  A  S  R  N  N  R  G  N  G  G  K  Q  G  S  S  *  S  C  S  Y  C  L  *  C  W  N  A  G  D  I  *  P  *  D  T  F  N  N  I  Y  K  R  V  *  E  I  I  *  *  H  E  W  I  T  K  C  T  S  R  E  Y  C  S  K  R  E  V  L  R  *  S  E  I  D  H  Q  M  F  E  </first_frame>
            <second_frame>  P  L  G  R  G  R  K  A  K  V  L  I  L  E  C  L  L  L  M  I  G  I  Y  D  K  E  I  E  L  E  N  W  V  K  E  E  A  E  H  T  A  L  A  W  L  E  R  M  N  S  E  G  G  K  P  Q  E  I  D  A  R  G  L  L  F  F  I  G  G  F  G  I  P  D  Q  F  T  N  A  N  I  R  N  L  F  Q  V  S  N  L  K  W  S  C  D  A  L  K  R  S  N  A  L  L  A  K  L  P  E  I  I  E  E  M  V  A  N  K  A  V  V  K  A  V  H  I  V  Y  S  V  G  M  Q  E  I  F  N  P  R  T  L  L  T  T  F  I  R  E  C  K  K  S  F  D  N  M  N  G  S  Q  S  A  H  Q  G  N  I  V  A  K  G  K  Y  L  G  D  L  R  S  I  I  K  C  L  R </second_frame>
            <third_frame>   L  W  V  G  E  G  R  L  K  Y  *  F  W  S  A  C  C  *  *  L  E  S  T  I  R  K  S  S  L  R  I  G  *  R  K  R  R  S  I  Q  L  *  H  G  W  R  G  *  I  L  K  E  E  S  L  K  K  S  M  P  E  V  C  S  S  L  L  G  V  L  G  F  Q  I  N  L  Q  M  R  I  S  E  I  C  F  R  *  V  T  L  S  G  V  V  M  H  S  N  D  Q  T  L  S  W  R  S  F  Q  K  *  *  R  K  W  W  Q  T  R  Q  *  L  K  L  F  I  L  S  I  V  L  E  C  R  R  Y  L  T  L  G  H  F  *  Q  H  L  *  E  S  V  R  N  H  L  I  T  *  M  D  H  K  V  H  I  K  G  I  L  *  Q  K  G  S  T  *  V  I  *  D  R  S  S  N  V  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0099A03.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="26380" stop="26934"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>555</number_coding_nucleotides>
                  <number_encoded_amino_acids>185</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PLGRGRKAKVLILECLLLMIGIYDKEIELENWVKEEAEHTALAWLERMNSEGGKPQEIDARGLLFFIGGFGIPDQFTNANIRNLFQVSNLKWSCDALKRSNALLAKLPEIIEEMVANKAVVKAVHIVYSVGMQEIFNPRTLLTTFIRECKKSFDNMNGSQSAHQGNIVAKGKYLGDLRSIIKCLR</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="37136" PGL_stop="40261"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="37136" e_stop="38537"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="37136" e_stop="38537" e_length="1402"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37136" stop="37699"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330272" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37370" stop="38133"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340478" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37935" stop="38537"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312831" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTCGCTCTTCTGAGATCGGTTCTGGTTACTTGAAAGAAGGGTCAGAGCGGAAATTATTTCTGGAACTACCACAATCTTCAACTGCCACTTCTGCTAATAAAGTGGAAGCCCAGACAGTGTCTGCCTTAGATGAAGCTCCAACAACTGTAATCCCATCAGACAAAGAGCAGGCACTAGATTCTGATCTTGTCTCTTGCTCATGTACTTCTATTACTGGAAATAAAGTCATGAGACCTACTTCTAGAAGTCCAAGTTTGATGAGACCTGTTTCCAGAAGCAGACTGTTTGTTAAGAAGAATGTCATTGCTGCTCTCACCAACAGTTCCAAGCAATCTAATGGTGGAATTGACAATTATTTGAGTTGTAGTACCAGTGAGATTCCTTGTCAGACACCTGAATATGTTGATCAGAGAGAAGAGGATAAAGTACCTTCAGAATCATGTGGTGAAAATAGTGTAGAAGTTAGCTCATCTATTCTGGAATCAAGTGTTACCAAACCTGGTCTCAGCTCAAGCAGTTGTAACAGAACAAGATGTATAGTTAAAAAAGGTGATGAAAGATCATTATCAAGAGAAAAAGGAGAGATATCTCAAAGTTCAAAGAGTAGCATTGGGGATTACAGCAGCACCACAAGCCTTAGCGAAGAAAGCTATCGTAGTGGGTCTAGCCGTAGTGGATATCGGCCTCATATGTCCGTAGATTTGAGATGGGAAGCCATTCGTTGTGTTCAGAAGCAGCATGGAAACATTAGTTTGAAGCAATTTAAGATGCTTAAAAAACTTGGTGGAGGGGACATTGGGACTGTTTATCTGTCTGAGCTAATGGGCACAAACTGTCAGTTTGCTGTGAAAGTTATGGACAATGACTTTCTGATCAGCAGGAGGAAGATGACAAGAGCGCAGACTGAAAAAGAAATACTGCAAATACTGGATCATCCTTTTCTACCTACACTCTATGCTCATATTACCAATGACAAGTATTCATGTTTAGTGATGGAATATTGTCCAGGAGGTGATCTGCATGTGCTCCGGCAAAAGCAAGCCAACAAGAATTTCTCTGAACAAGCAGTCAGGTTACTTTTATTATGGTTACTTCTTCCCTGAAACTATTTCTTGTTTATGTCTATTCCTAATCTAGATTCCAAGAGAATAGGCAAATAAATCTGCAAATAAAACTATGCTTTTCTATAACAGGTAATATATATTTTGTGGTCACTCTCTTTTTCATGATTGCTCTCCGATTTATGAAGATACGCATGTCTTGAAGCCCTTACATTAAGACTTTAGAGATACCATTCTTCAATAAGCTAGACTCTTTTGCATCCACAAAATGACTTTTACTTGTCACTTGCTGATGGATAATAGCTTGCTTTATGCTATCGCTTGTTTTATTCAACAAAATT</gDNA_template>
            <first_frame> L  A  L  L  R  S  V  L  V  T  *  K  K  G  Q  S  G  N  Y  F  W  N  Y  H  N  L  Q  L  P  L  L  L  I  K  W  K  P  R  Q  C  L  P  *  M  K  L  Q  Q  L  *  S  H  Q  T  K  S  R  H  *  I  L  I  L  S  L  A  H  V  L  L  L  L  E  I  K  S  *  D  L  L  L  E  V  Q  V  *  *  D  L  F  P  E  A  D  C  L  L  R  R  M  S  L  L  L  S  P  T  V  P  S  N  L  M  V  E  L  T  I  I  *  V  V  V  P  V  R  F  L  V  R  H  L  N  M  L  I  R  E  K  R  I  K  Y  L  Q  N  H  V  V  K  I  V  *  K  L  A  H  L  F  W  N  Q  V  L  P  N  L  V  S  A  Q  A  V  V  T  E  Q  D  V  *  L  K  K  V  M  K  D  H  Y  Q  E  K  K  E  R  Y  L  K  V  Q  R  V  A  L  G  I  T  A  A  P  Q  A  L  A  K  K  A  I  V  V  G  L  A  V  V  D  I  G  L  I  C  P  *  I  *  D  G  K  P  F  V  V  F  R  S  S  M  E  T  L  V  *  S  N  L  R  C  L  K  N  L  V  E  G  T  L  G  L  F  I  C  L  S  *  W  A  Q  T  V  S  L  L  *  K  L  W  T  M  T  F  *  S  A  G  G  R  *  Q  E  R  R  L  K  K  K  Y  C  K  Y  W  I  I  L  F  Y  L  H  S  M  L  I  L  P  M  T  S  I  H  V  *  *  W  N  I  V  Q  E  V  I  C  M  C  S  G  K  S  K  P  T  R  I  S  L  N  K  Q  S  G  Y  F  Y  Y  G  Y  F  F  P  E  T  I  S  C  L  C  L  F  L  I  *  I  P  R  E  *  A  N  K  S  A  N  K  T  M  L  F  Y  N  R  *  Y  I  F  C  G  H  S  L  F  H  D  C  S  P  I  Y  E  D  T  H  V  L  K  P  L  H  *  D  F  R  D  T  I  L  Q  *  A  R  L  F  C  I  H  K  M  T  F  T  C  H  L  L  M  D  N  S  L  L  Y  A  I  A  C  F  I  Q  Q  N  </first_frame>
            <second_frame>  S  L  F  *  D  R  F  W  L  L  E  R  R  V  R  A  E  I  I  S  G  T  T  T  I  F  N  C  H  F  C  *  *  S  G  S  P  D  S  V  C  L  R  *  S  S  N  N  C  N  P  I  R  Q  R  A  G  T  R  F  *  S  C  L  L  L  M  Y  F  Y  Y  W  K  *  S  H  E  T  Y  F  *  K  S  K  F  D  E  T  C  F  Q  K  Q  T  V  C  *  E  E  C  H  C  C  S  H  Q  Q  F  Q  A  I  *  W  W  N  *  Q  L  F  E  L  *  Y  Q  *  D  S  L  S  D  T  *  I  C  *  S  E  R  R  G  *  S  T  F  R  I  M  W  *  K  *  C  R  S  *  L  I  Y  S  G  I  K  C  Y  Q  T  W  S  Q  L  K  Q  L  *  Q  N  K  M  Y  S  *  K  R  *  *  K  I  I  I  K  R  K  R  R  D  I  S  K  F  K  E  *  H  W  G  L  Q  Q  H  H  K  P  *  R  R  K  L  S  *  W  V  *  P  *  W  I  S  A  S  Y  V  R  R  F  E  M  G  S  H  S  L  C  S  E  A  A  W  K  H  *  F  E  A  I  *  D  A  *  K  T  W  W  R  G  H  W  D  C  L  S  V  *  A  N  G  H  K  L  S  V  C  C  E  S  Y  G  Q  *  L  S  D  Q  Q  E  E  D  D  K  S  A  D  *  K  R  N  T  A  N  T  G  S  S  F  S  T  Y  T  L  C  S  Y  Y  Q  *  Q  V  F  M  F  S  D  G  I  L  S  R  R  *  S  A  C  A  P  A  K  A  S  Q  Q  E  F  L  *  T  S  S  Q  V  T  F  I  M  V  T  S  S  L  K  L  F  L  V  Y  V  Y  S  *  S  R  F  Q  E  N  R  Q  I  N  L  Q  I  K  L  C  F  S  I  T  G  N  I  Y  F  V  V  T  L  F  F  M  I  A  L  R  F  M  K  I  R  M  S  *  S  P  Y  I  K  T  L  E  I  P  F  F  N  K  L  D  S  F  A  S  T  K  *  L  L  L  V  T  C  *  W  I  I  A  C  F  M  L  S  L  V  L  F  N  K  I </second_frame>
            <third_frame>   R  S  S  E  I  G  S  G  Y  L  K  E  G  S  E  R  K  L  F  L  E  L  P  Q  S  S  T  A  T  S  A  N  K  V  E  A  Q  T  V  S  A  L  D  E  A  P  T  T  V  I  P  S  D  K  E  Q  A  L  D  S  D  L  V  S  C  S  C  T  S  I  T  G  N  K  V  M  R  P  T  S  R  S  P  S  L  M  R  P  V  S  R  S  R  L  F  V  K  K  N  V  I  A  A  L  T  N  S  S  K  Q  S  N  G  G  I  D  N  Y  L  S  C  S  T  S  E  I  P  C  Q  T  P  E  Y  V  D  Q  R  E  E  D  K  V  P  S  E  S  C  G  E  N  S  V  E  V  S  S  S  I  L  E  S  S  V  T  K  P  G  L  S  S  S  S  C  N  R  T  R  C  I  V  K  K  G  D  E  R  S  L  S  R  E  K  G  E  I  S  Q  S  S  K  S  S  I  G  D  Y  S  S  T  T  S  L  S  E  E  S  Y  R  S  G  S  S  R  S  G  Y  R  P  H  M  S  V  D  L  R  W  E  A  I  R  C  V  Q  K  Q  H  G  N  I  S  L  K  Q  F  K  M  L  K  K  L  G  G  G  D  I  G  T  V  Y  L  S  E  L  M  G  T  N  C  Q  F  A  V  K  V  M  D  N  D  F  L  I  S  R  R  K  M  T  R  A  Q  T  E  K  E  I  L  Q  I  L  D  H  P  F  L  P  T  L  Y  A  H  I  T  N  D  K  Y  S  C  L  V  M  E  Y  C  P  G  G  D  L  H  V  L  R  Q  K  Q  A  N  K  N  F  S  E  Q  A  V  R  L  L  L  L  W  L  L  L  P  *  N  Y  F  L  F  M  S  I  P  N  L  D  S  K  R  I  G  K  *  I  C  K  *  N  Y  A  F  L  *  Q  V  I  Y  I  L  W  S  L  S  F  S  *  L  L  S  D  L  *  R  Y  A  C  L  E  A  L  T  L  R  L  *  R  Y  H  S  S  I  S  *  T  L  L  H  P  Q  N  D  F  Y  L  S  L  A  D  G  *  *  L  A  L  C  Y  R  L  F  Y  S  T  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0099A03.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="37138" stop="38238"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1098</number_coding_nucleotides>
                  <number_encoded_amino_acids>366</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RSSEIGSGYLKEGSERKLFLELPQSSTATSANKVEAQTVSALDEAPTTVIPSDKEQALDSDLVSCSCTSITGNKVMRPTSRSPSLMRPVSRSRLFVKKNVIAALTNSSKQSNGGIDNYLSCSTSEIPCQTPEYVDQREEDKVPSESCGENSVEVSSSILESSVTKPGLSSSSCNRTRCIVKKGDERSLSREKGEISQSSKSSIGDYSSTTSLSEESYRSGSSRSGYRPHMSVDLRWEAIRCVQKQHGNISLKQFKMLKKLGGGDIGTVYLSELMGTNCQFAVKVMDNDFLISRRKMTRAQTEKEILQILDHPFLPTLYAHITNDKYSCLVMEYCPGGDLHVLRQKQANKNFSEQAVRLLLLWLLLP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="38163" e_stop="38207"/>
            <exon e_start="39400" e_stop="40261"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.989" e_score="0.978"/>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.978">
            <gDNA_exon_boundary e_start="38163" e_stop="38207" e_length="45"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.989">
            <gDNA_intron_boundary i_start="38208" i_stop="39399" i_length="1192"/>
          </intron>
          <exon e_serial="2" e_score="0.999">
            <gDNA_exon_boundary e_start="39400" e_stop="40261" e_length="862"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38163" stop="38207"/>
              <exon start="39400" stop="40261"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740515" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38163" stop="38207"/>
              <exon start="39400" stop="40151"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738974" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCGGCAAAAGCAAGCCAACAAGAATTTCTCTGAACAAGCAGTCAG : ATTTTATGTAGCGGAAGTTCTTCTTGCTTTGGAATACCTTCACATGCTTGGAGTCATCTACCGAGACTTAAAACCAGAGAATGTCTTGGTTCGAGAAGATGGTCACATCATGCTGTCCGATTTTGATCTGTCTCTTAGATGTGTTGTTAATCCCATGTTGGTGAAATCATGTTCGCCTGTGATTAAGCCTCCAAAGACGTCTAGTCCATGCTCGGAATCTAGCTGCATAGATCCCTTTTGCCTACATCCATCCTGGCAAGTATCCTGCTTCACCCCTAGATTTTTATCTGCAACATCAAAGACACGTAAGCTAAAGGCTGACATCGCTGCACAAGTCACACCTTTGCCACAGCTCGTAGTGGAGCCAACTAATGCCCGATCCAACTCGTTTGTTGGCACCCATGAATACCTGGCTCCAGAGATTATCAAAGGAGAAGGTCATGGCAGTGCAGTAGATTGGTGGACCTTTGGTATCTTTCTATATGAACTGTTATATGGAAGGACACCTTTTAAAGGACCAGGAAATGAGGATACATTAGCAAATGTGGTTTCTCAGTGTCTCAAGTTCCCTTCATATCCTGTGGTTAGCTCTAGTGCGAGAGATCTGATCAGACGGTTATTACAAAAGGAACCAGAGAATAGGTTGGGAGCTGAGAAAGGAGCTGCAGAGATAAAGCAGCATCCTTTCTTCGAGGGACTGAACTGGGCGTTAATACGATGTGAAACACCTCCAGAACTGCCTAGATTCTGTGAATTGGGAAATGTAATCCCTGATACCAACCAACAGAACAAGGAGATTGCCAAGTCTCACAAAGAGTTCAAAAGTATAGAAGAGGACATTGCGTTTGAGATGTTTTAACTT</gDNA_template>
            <first_frame> P  A  K  A  S  Q  Q  E  F  L  *  T  S  S  Q  :  I  L  C  S  G  S  S  S  C  F  G  I  P  S  H  A  W  S  H  L  P  R  L  K  T  R  E  C  L  G  S  R  R  W  S  H  H  A  V  R  F  *  S  V  S  *  M  C  C  *  S  H  V  G  E  I  M  F  A  C  D  *  A  S  K  D  V  *  S  M  L  G  I  *  L  H  R  S  L  L  P  T  S  I  L  A  S  I  L  L  H  P  *  I  F  I  C  N  I  K  D  T  *  A  K  G  *  H  R  C  T  S  H  T  F  A  T  A  R  S  G  A  N  *  C  P  I  Q  L  V  C  W  H  P  *  I  P  G  S  R  D  Y  Q  R  R  R  S  W  Q  C  S  R  L  V  D  L  W  Y  L  S  I  *  T  V  I  W  K  D  T  F  *  R  T  R  K  *  G  Y  I  S  K  C  G  F  S  V  S  Q  V  P  F  I  S  C  G  *  L  *  C  E  R  S  D  Q  T  V  I  T  K  G  T  R  E  *  V  G  S  *  E  R  S  C  R  D  K  A  A  S  F  L  R  G  T  E  L  G  V  N  T  M  *  N  T  S  R  T  A  *  I  L  *  I  G  K  C  N  P  *  Y  Q  P  T  E  Q  G  D  C  Q  V  S  Q  R  V  Q  K  Y  R  R  G  H  C  V  *  D  V  L  T  </first_frame>
            <second_frame>  R  Q  K  Q  A  N  K  N  F  S  E  Q  A  V  R :   F  Y  V  A  E  V  L  L  A  L  E  Y  L  H  M  L  G  V  I  Y  R  D  L  K  P  E  N  V  L  V  R  E  D  G  H  I  M  L  S  D  F  D  L  S  L  R  C  V  V  N  P  M  L  V  K  S  C  S  P  V  I  K  P  P  K  T  S  S  P  C  S  E  S  S  C  I  D  P  F  C  L  H  P  S  W  Q  V  S  C  F  T  P  R  F  L  S  A  T  S  K  T  R  K  L  K  A  D  I  A  A  Q  V  T  P  L  P  Q  L  V  V  E  P  T  N  A  R  S  N  S  F  V  G  T  H  E  Y  L  A  P  E  I  I  K  G  E  G  H  G  S  A  V  D  W  W  T  F  G  I  F  L  Y  E  L  L  Y  G  R  T  P  F  K  G  P  G  N  E  D  T  L  A  N  V  V  S  Q  C  L  K  F  P  S  Y  P  V  V  S  S  S  A  R  D  L  I  R  R  L  L  Q  K  E  P  E  N  R  L  G  A  E  K  G  A  A  E  I  K  Q  H  P  F  F  E  G  L  N  W  A  L  I  R  C  E  T  P  P  E  L  P  R  F  C  E  L  G  N  V  I  P  D  T  N  Q  Q  N  K  E  I  A  K  S  H  K  E  F  K  S  I  E  E  D  I  A  F  E  M  F  *  L </second_frame>
            <third_frame>   G  K  S  K  P  T  R  I  S  L  N  K  Q  S   : D  F  M  *  R  K  F  F  L  L  W  N  T  F  T  C  L  E  S  S  T  E  T  *  N  Q  R  M  S  W  F  E  K  M  V  T  S  C  C  P  I  L  I  C  L  L  D  V  L  L  I  P  C  W  *  N  H  V  R  L  *  L  S  L  Q  R  R  L  V  H  A  R  N  L  A  A  *  I  P  F  A  Y  I  H  P  G  K  Y  P  A  S  P  L  D  F  Y  L  Q  H  Q  R  H  V  S  *  R  L  T  S  L  H  K  S  H  L  C  H  S  S  *  W  S  Q  L  M  P  D  P  T  R  L  L  A  P  M  N  T  W  L  Q  R  L  S  K  E  K  V  M  A  V  Q  *  I  G  G  P  L  V  S  F  Y  M  N  C  Y  M  E  G  H  L  L  K  D  Q  E  M  R  I  H  *  Q  M  W  F  L  S  V  S  S  S  L  H  I  L  W  L  A  L  V  R  E  I  *  S  D  G  Y  Y  K  R  N  Q  R  I  G  W  E  L  R  K  E  L  Q  R  *  S  S  I  L  S  S  R  D  *  T  G  R  *  Y  D  V  K  H  L  Q  N  C  L  D  S  V  N  W  E  M  *  S  L  I  P  T  N  R  T  R  R  L  P  S  L  T  K  S  S  K  V  *  K  R  T  L  R  L  R  C  F  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0099A03.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="38164" stop="38207"/>
                    <exon start="39400" stop="40258"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>900</number_coding_nucleotides>
                  <number_encoded_amino_acids>300</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RQKQANKNFSEQAVRFYVAEVLLALEYLHMLGVIYRDLKPENVLVREDGHIMLSDFDLSLRCVVNPMLVKSCSPVIKPPKTSSPCSESSCIDPFCLHPSWQVSCFTPRFLSATSKTRKLKADIAAQVTPLPQLVVEPTNARSNSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLYGRTPFKGPGNEDTLANVVSQCLKFPSYPVVSSSARDLIRRLLQKEPENRLGAEKGAAEIKQHPFFEGLNWALIRCETPPELPRFCELGNVIPDTNQQNKEIAKSHKEFKSIEEDIAFEMF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="40363" PGL_stop="39729"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="40363" e_stop="39729"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.965"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.965">
            <gDNA_exon_boundary e_start="40363" e_stop="39729" e_length="635"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40363" stop="39729"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577230" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTGGATTCTACACTATGCTATATATACTACTTACATGGATCACAGATATTTTGCTAAAAAGGAGTAAAGAAAAACAAACCTATCCATTCTCAGGTCTAGTAAAAGTTAAAACATCTCAAACGCAATGTCCTCTTCTATACTTTTGAACTCTTTGTGAGACTTGGCAATCTCCTTGTTCTGTTGGTTGGTATCAGGGATTACATTTCCCAATTCACAGAATCTAGGCAGTTCTGGAGGTGTTTCACATCGTATTAACGCCCAGTTCAGTCCCTCGAAGAAAGGATGCTGCTTTATCTCTGCAGCTCCTTTCTCAGCTCCCAACCTATTCTCTGGTTCCTTTTGTAATAACCGTCTGATCAGATCTCTCGCACTAGAGCTAACCACAGGATATGAAGGGAACTTGAGACACTGAGAAACCACATTTGCTAATGTATCCTCATTTCCTGGTCCTTTAAAAGGTGTCCTTCCATATAACAGTTCATATAGAAAGATACCAAAGGTCCACCAATCTACTGCACTGCCATGACCTTCTCCTTTGATAATCTCTGGAGCCAGGTATTCATGGGTGCCAACAAACGAGTTGGATCGGGCATTAGTTGGCTCCACTACGAGCTGTGGCAAAGGTGTGACTTGTG</gDNA_template>
            <first_frame> L  D  S  T  L  C  Y  I  Y  Y  L  H  G  S  Q  I  F  C  *  K  G  V  K  K  N  K  P  I  H  S  Q  V  *  *  K  L  K  H  L  K  R  N  V  L  F  Y  T  F  E  L  F  V  R  L  G  N  L  L  V  L  L  V  G  I  R  D  Y  I  S  Q  F  T  E  S  R  Q  F  W  R  C  F  T  S  Y  *  R  P  V  Q  S  L  E  E  R  M  L  L  Y  L  C  S  S  F  L  S  S  Q  P  I  L  W  F  L  L  *  *  P  S  D  Q  I  S  R  T  R  A  N  H  R  I  *  R  E  L  E  T  L  R  N  H  I  C  *  C  I  L  I  S  W  S  F  K  R  C  P  S  I  *  Q  F  I  *  K  D  T  K  G  P  P  I  Y  C  T  A  M  T  F  S  F  D  N  L  W  S  Q  V  F  M  G  A  N  K  R  V  G  S  G  I  S  W  L  H  Y  E  L  W  Q  R  C  D  L   </first_frame>
            <second_frame>  W  I  L  H  Y  A  I  Y  T  T  Y  M  D  H  R  Y  F  A  K  K  E  *  R  K  T  N  L  S  I  L  R  S  S  K  S  *  N  I  S  N  A  M  S  S  S  I  L  L  N  S  L  *  D  L  A  I  S  L  F  C  W  L  V  S  G  I  T  F  P  N  S  Q  N  L  G  S  S  G  G  V  S  H  R  I  N  A  Q  F  S  P  S  K  K  G  C  C  F  I  S  A  A  P  F  S  A  P  N  L  F  S  G  S  F  C  N  N  R  L  I  R  S  L  A  L  E  L  T  T  G  Y  E  G  N  L  R  H  *  E  T  T  F  A  N  V  S  S  F  P  G  P  L  K  G  V  L  P  Y  N  S  S  Y  R  K  I  P  K  V  H  Q  S  T  A  L  P  *  P  S  P  L  I  I  S  G  A  R  Y  S  W  V  P  T  N  E  L  D  R  A  L  V  G  S  T  T  S  C  G  K  G  V  T  C  </second_frame>
            <third_frame>   G  F  Y  T  M  L  Y  I  L  L  T  W  I  T  D  I  L  L  K  R  S  K  E  K  Q  T  Y  P  F  S  G  L  V  K  V  K  T  S  Q  T  Q  C  P  L  L  Y  F  *  T  L  C  E  T  W  Q  S  P  C  S  V  G  W  Y  Q  G  L  H  F  P  I  H  R  I  *  A  V  L  E  V  F  H  I  V  L  T  P  S  S  V  P  R  R  K  D  A  A  L  S  L  Q  L  L  S  Q  L  P  T  Y  S  L  V  P  F  V  I  T  V  *  S  D  L  S  H  *  S  *  P  Q  D  M  K  G  T  *  D  T  E  K  P  H  L  L  M  Y  P  H  F  L  V  L  *  K  V  S  F  H  I  T  V  H  I  E  R  Y  Q  R  S  T  N  L  L  H  C  H  D  L  L  L  *  *  S  L  E  P  G  I  H  G  C  Q  Q  T  S  W  I  G  H  *  L  A  P  L  R  A  V  A  K  V  *  L  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0099A03.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="40206" stop="39952"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>252</number_coding_nucleotides>
                  <number_encoded_amino_acids>84</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DLAISLFCWLVSGITFPNSQNLGSSGGVSHRINAQFSPSKKGCCFISAAPFSAPNLFSGSFCNNRLIRSLALELTTGYEGNLRH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="43225" PGL_stop="40577"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="43225" e_stop="43054"/>
            <exon e_start="41188" e_stop="41029"/>
            <exon e_start="40946" e_stop="40577"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="43225" e_stop="43054" e_length="172"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.993">
            <gDNA_intron_boundary i_start="43053" i_stop="41189" i_length="1865"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="41188" e_stop="41029" e_length="160"/>
          </exon>
          <intron i_serial="2" don_prob="0.976" acc_prob="0.999">
            <gDNA_intron_boundary i_start="41028" i_stop="40947" i_length="82"/>
          </intron>
          <exon e_serial="3" e_score="0.989">
            <gDNA_exon_boundary e_start="40946" e_stop="40577" e_length="370"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43225" stop="43054"/>
              <exon start="41188" stop="41029"/>
              <exon start="40946" stop="40636"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722533" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43167" stop="43054"/>
              <exon start="41188" stop="41029"/>
              <exon start="40946" stop="40636"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E593086" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43118" stop="43054"/>
              <exon start="41188" stop="41029"/>
              <exon start="40946" stop="40642"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724380" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43117" stop="43054"/>
              <exon start="41188" stop="41029"/>
              <exon start="40946" stop="40633"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734737" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43104" stop="43054"/>
              <exon start="41188" stop="41029"/>
              <exon start="40946" stop="40577"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721548" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43090" stop="43054"/>
              <exon start="41188" stop="41062"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293814" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43086" stop="43054"/>
              <exon start="41188" stop="41029"/>
              <exon start="40946" stop="40653"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713172" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43084" stop="43054"/>
              <exon start="41188" stop="41029"/>
              <exon start="40946" stop="40653"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243241" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43074" stop="43054"/>
              <exon start="41188" stop="41029"/>
              <exon start="40946" stop="40695"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243048" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41188" stop="41029"/>
              <exon start="40946" stop="40638"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220580" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41185" stop="41029"/>
              <exon start="40946" stop="40634"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717138" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41184" stop="41029"/>
              <exon start="40946" stop="40634"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717131" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41184" stop="41029"/>
              <exon start="40946" stop="40634"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714906" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41183" stop="41029"/>
              <exon start="40946" stop="40635"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717132" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41183" stop="41029"/>
              <exon start="40946" stop="40640"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717136" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41183" stop="41029"/>
              <exon start="40946" stop="40646"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717130" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41182" stop="41029"/>
              <exon start="40946" stop="40647"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577759" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41179" stop="41029"/>
              <exon start="40946" stop="40636"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720701" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41158" stop="41029"/>
              <exon start="40946" stop="40730"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717135" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41136" stop="41029"/>
              <exon start="40946" stop="40653"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222950" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41085" stop="41029"/>
              <exon start="40946" stop="40653"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E223461" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41049" stop="41029"/>
              <exon start="40946" stop="40638"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218867" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40860" stop="40638"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220435" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40853" stop="40642"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E597970" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40849" stop="40636"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E593858" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40839" stop="40644"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309391" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40836" stop="40636"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308483" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40836" stop="40636"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309377" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAATTCTAAGTGTTTATATTTGCAAACTTTTAAAATGTTGGCTAAAAGTTAAATAATTGGAAATTCAATTGGATCGGAAATTTCTAGGTTTTAGCTTCGATTCAACTAATTGATTTTCTTCATCGACGACTCCCTGCTCATCGTCTTCAGCTTTCTCTCCGTCGCTTGCCAA : GATGTCAGAAGAAGCACCTTTCTATCCCAGAGAAAAGCTTGTTGAGAAGCAAAAGTTTTACCAAAGCGTCCACAAGCACACATACTTGAAAGGTCGTTTTGACAAGGTCACCTCAGTGGCCATTCCAGCTGCTTTGGCTGCTTCTGCTTTGTTTATGATT : GGGAGAGGGATCTACAACATGTCTCATGGCATAGGGAAGAAGGAATAAATAGCGGCTACTGCTCGACTATTGTTCCTATGGTGGCTGAATTTGAAACGACCTGTTTGTTCTTTTGTTGATTTTCAATTATCAGTAGCTAATACTAGTCACTTGGATGCTGATATTAAAACATGCCGATTTATGGCATATGCTATCAGTACTCCGCAGCATAATAACACATTATCTCCTCTGTTTAGGGGTTCTGCATATTTGTATTAAACGGTGTTTGTGTGGAAATAAGCATGTCATTTTCTGGCTCTCCTTAACCCTGTATTATGTGTTTCCAATCATAACTGTTTAAATATCCTGCTGAGTTTTTGCCTGTATATTA</gDNA_template>
            <first_frame> K  F  *  V  F  I  F  A  N  F  *  N  V  G  *  K  L  N  N  W  K  F  N  W  I  G  N  F  *  V  L  A  S  I  Q  L  I  D  F  L  H  R  R  L  P  A  H  R  L  Q  L  S  L  R  R  L  P   : R  C  Q  K  K  H  L  S  I  P  E  K  S  L  L  R  S  K  S  F  T  K  A  S  T  S  T  H  T  *  K  V  V  L  T  R  S  P  Q  W  P  F  Q  L  L  W  L  L  L  L  C  L  *  L :   G  E  G  S  T  T  C  L  M  A  *  G  R  R  N  K  *  R  L  L  L  D  Y  C  S  Y  G  G  *  I  *  N  D  L  F  V  L  L  L  I  F  N  Y  Q  *  L  I  L  V  T  W  M  L  I  L  K  H  A  D  L  W  H  M  L  S  V  L  R  S  I  I  T  H  Y  L  L  C  L  G  V  L  H  I  C  I  K  R  C  L  C  G  N  K  H  V  I  F  W  L  S  L  T  L  Y  Y  V  F  P  I  I  T  V  *  I  S  C  *  V  F  A  C  I  L </first_frame>
            <second_frame>  N  S  K  C  L  Y  L  Q  T  F  K  M  L  A  K  S  *  I  I  G  N  S  I  G  S  E  I  S  R  F  *  L  R  F  N  *  L  I  F  F  I  D  D  S  L  L  I  V  F  S  F  L  S  V  A  C  Q  :  D  V  R  R  S  T  F  L  S  Q  R  K  A  C  *  E  A  K  V  L  P  K  R  P  Q  A  H  I  L  E  R  S  F  *  Q  G  H  L  S  G  H  S  S  C  F  G  C  F  C  F  V  Y  D   : W  E  R  D  L  Q  H  V  S  W  H  R  E  E  G  I  N  S  G  Y  C  S  T  I  V  P  M  V  A  E  F  E  T  T  C  L  F  F  C  *  F  S  I  I  S  S  *  Y  *  S  L  G  C  *  Y  *  N  M  P  I  Y  G  I  C  Y  Q  Y  S  A  A  *  *  H  I  I  S  S  V  *  G  F  C  I  F  V  L  N  G  V  C  V  E  I  S  M  S  F  S  G  S  P  *  P  C  I  M  C  F  Q  S  *  L  F  K  Y  P  A  E  F  L  P  V  Y   </second_frame>
            <third_frame>   I  L  S  V  Y  I  C  K  L  L  K  C  W  L  K  V  K  *  L  E  I  Q  L  D  R  K  F  L  G  F  S  F  D  S  T  N  *  F  S  S  S  T  T  P  C  S  S  S  S  A  F  S  P  S  L  A  K :   M  S  E  E  A  P  F  Y  P  R  E  K  L  V  E  K  Q  K  F  Y  Q  S  V  H  K  H  T  Y  L  K  G  R  F  D  K  V  T  S  V  A  I  P  A  A  L  A  A  S  A  L  F  M  I  :  G  R  G  I  Y  N  M  S  H  G  I  G  K  K  E  *  I  A  A  T  A  R  L  L  F  L  W  W  L  N  L  K  R  P  V  C  S  F  V  D  F  Q  L  S  V  A  N  T  S  H  L  D  A  D  I  K  T  C  R  F  M  A  Y  A  I  S  T  P  Q  H  N  N  T  L  S  P  L  F  R  G  S  A  Y  L  Y  *  T  V  F  V  W  K  *  A  C  H  F  L  A  L  L  N  P  V  L  C  V  S  N  H  N  C  L  N  I  L  L  S  F  C  L  Y  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0099A03.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="43112" stop="43054"/>
                    <exon start="41188" stop="41029"/>
                    <exon start="40946" stop="40899"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>264</number_coding_nucleotides>
                  <number_encoded_amino_acids>88</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FSSSTTPCSSSSAFSPSLAKMSEEAPFYPREKLVEKQKFYQSVHKHTYLKGRFDKVTSVAIPAALAASALFMIGRGIYNMSHGIGKKE*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0099A03.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="40898" stop="40689"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IAATARLLFLWWLNLKRPVCSFVDFQLSVANTSHLDADIKTCRFMAYAISTPQHNNTLSPLFRGSAYLY*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0099A03.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="40810" stop="40607"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LILVTWMLILKHADLWHMLSVLRSIITHYLLCLGVLHICIKRCLCGNKHVIFWLSLTLYYVFPIITV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="41495" e_stop="41029"/>
            <exon e_start="40946" e_stop="40634"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.976" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="41495" e_stop="41029" e_length="467"/>
          </exon>
          <intron i_serial="1" don_prob="0.976" acc_prob="0.999">
            <gDNA_intron_boundary i_start="41028" i_stop="40947" i_length="82"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="40946" e_stop="40634" e_length="313"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41495" stop="41029"/>
              <exon start="40946" stop="40642"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541924" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41188" stop="41029"/>
              <exon start="40946" stop="40638"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220580" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41185" stop="41029"/>
              <exon start="40946" stop="40634"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717138" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41184" stop="41029"/>
              <exon start="40946" stop="40634"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717131" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41184" stop="41029"/>
              <exon start="40946" stop="40634"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714906" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41183" stop="41029"/>
              <exon start="40946" stop="40635"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717132" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41183" stop="41029"/>
              <exon start="40946" stop="40640"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717136" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41183" stop="41029"/>
              <exon start="40946" stop="40646"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717130" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41182" stop="41029"/>
              <exon start="40946" stop="40647"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577759" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41179" stop="41029"/>
              <exon start="40946" stop="40636"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720701" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41158" stop="41029"/>
              <exon start="40946" stop="40730"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717135" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41136" stop="41029"/>
              <exon start="40946" stop="40653"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222950" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41085" stop="41029"/>
              <exon start="40946" stop="40653"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E223461" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41049" stop="41029"/>
              <exon start="40946" stop="40638"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218867" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40860" stop="40638"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220435" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40853" stop="40642"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E597970" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40849" stop="40636"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E593858" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40839" stop="40644"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309391" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40836" stop="40636"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308483" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40836" stop="40636"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309377" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGTCATATGCATTTCATGCACTTTCAAATATTCTTTTATGCTGATGGACTCCTCTTTTTATATACCTGGTCCTGGACTACAAATTCAATTGCACCTCTTTTCTAGAATAAATCATTTTATGCAAAGCTTGTTTTAGTTATTTAAGCATCCATGAAAGATTCACTTCTCTCGTAGTGTGCCACAAATATGTTAGAAAAAGAAGGGAATGTTGCGGATATTAACCATCCTAACGTGGTGCAGGTTAAACTGATTGGTTATATTCATTTTATTACGAGATTGTAAATTTACAAGTTATTGAATAACACAGGATGTCAGAAGAAGCACCTTTCTATCCCAGAGAAAAGCTTGTTGAGAAGCAAAAGTTTTACCAAAGCGTCCACAAGCACACATACTTGAAAGGTCGTTTTGACAAGGTCACCTCAGTGGCCATTCCAGCTGCTTTGGCTGCTTCTGCTTTGTTTATGATT : GGGAGAGGGATCTACAACATGTCTCATGGCATAGGGAAGAAGGAATAAATAGCGGCTACTGCTCGACTATTGTTCCTATGGTGGCTGAATTTGAAACGACCTGTTTGTTCTTTTGTTGATTTTCAATTATCAGTAGCTAATACTAGTCACTTGGATGCTGATATTAAAACATGCCGATTTATGGCATATGCTATCAGTACTCCGCAGCATAATAACACATTATCTCCTCTGTTTAGGGGTTCTGCATATTTGTATTAAACGGTGTTTGTGTGGAAATAAGCATGTCATTTTCTGGCTCTCCTTAACCCTGTAT</gDNA_template>
            <first_frame> S  H  M  H  F  M  H  F  Q  I  F  F  Y  A  D  G  L  L  F  L  Y  T  W  S  W  T  T  N  S  I  A  P  L  F  *  N  K  S  F  Y  A  K  L  V  L  V  I  *  A  S  M  K  D  S  L  L  S  *  C  A  T  N  M  L  E  K  E  G  N  V  A  D  I  N  H  P  N  V  V  Q  V  K  L  I  G  Y  I  H  F  I  T  R  L  *  I  Y  K  L  L  N  N  T  G  C  Q  K  K  H  L  S  I  P  E  K  S  L  L  R  S  K  S  F  T  K  A  S  T  S  T  H  T  *  K  V  V  L  T  R  S  P  Q  W  P  F  Q  L  L  W  L  L  L  L  C  L  *  L :   G  E  G  S  T  T  C  L  M  A  *  G  R  R  N  K  *  R  L  L  L  D  Y  C  S  Y  G  G  *  I  *  N  D  L  F  V  L  L  L  I  F  N  Y  Q  *  L  I  L  V  T  W  M  L  I  L  K  H  A  D  L  W  H  M  L  S  V  L  R  S  I  I  T  H  Y  L  L  C  L  G  V  L  H  I  C  I  K  R  C  L  C  G  N  K  H  V  I  F  W  L  S  L  T  L  Y </first_frame>
            <second_frame>  V  I  C  I  S  C  T  F  K  Y  S  F  M  L  M  D  S  S  F  Y  I  P  G  P  G  L  Q  I  Q  L  H  L  F  S  R  I  N  H  F  M  Q  S  L  F  *  L  F  K  H  P  *  K  I  H  F  S  R  S  V  P  Q  I  C  *  K  K  K  G  M  L  R  I  L  T  I  L  T  W  C  R  L  N  *  L  V  I  F  I  L  L  R  D  C  K  F  T  S  Y  *  I  T  Q  D  V  R  R  S  T  F  L  S  Q  R  K  A  C  *  E  A  K  V  L  P  K  R  P  Q  A  H  I  L  E  R  S  F  *  Q  G  H  L  S  G  H  S  S  C  F  G  C  F  C  F  V  Y  D   : W  E  R  D  L  Q  H  V  S  W  H  R  E  E  G  I  N  S  G  Y  C  S  T  I  V  P  M  V  A  E  F  E  T  T  C  L  F  F  C  *  F  S  I  I  S  S  *  Y  *  S  L  G  C  *  Y  *  N  M  P  I  Y  G  I  C  Y  Q  Y  S  A  A  *  *  H  I  I  S  S  V  *  G  F  C  I  F  V  L  N  G  V  C  V  E  I  S  M  S  F  S  G  S  P  *  P  C   </second_frame>
            <third_frame>   S  Y  A  F  H  A  L  S  N  I  L  L  C  *  W  T  P  L  F  I  Y  L  V  L  D  Y  K  F  N  C  T  S  F  L  E  *  I  I  L  C  K  A  C  F  S  Y  L  S  I  H  E  R  F  T  S  L  V  V  C  H  K  Y  V  R  K  R  R  E  C  C  G  Y  *  P  S  *  R  G  A  G  *  T  D  W  L  Y  S  F  Y  Y  E  I  V  N  L  Q  V  I  E  *  H  R  M  S  E  E  A  P  F  Y  P  R  E  K  L  V  E  K  Q  K  F  Y  Q  S  V  H  K  H  T  Y  L  K  G  R  F  D  K  V  T  S  V  A  I  P  A  A  L  A  A  S  A  L  F  M  I  :  G  R  G  I  Y  N  M  S  H  G  I  G  K  K  E  *  I  A  A  T  A  R  L  L  F  L  W  W  L  N  L  K  R  P  V  C  S  F  V  D  F  Q  L  S  V  A  N  T  S  H  L  D  A  D  I  K  T  C  R  F  M  A  Y  A  I  S  T  P  Q  H  N  N  T  L  S  P  L  F  R  G  S  A  Y  L  Y  *  T  V  F  V  W  K  *  A  C  H  F  L  A  L  L  N  P  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0099A03.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41193" stop="41029"/>
                    <exon start="40946" stop="40899"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HRMSEEAPFYPREKLVEKQKFYQSVHKHTYLKGRFDKVTSVAIPAALAASALFMIGRGIYNMSHGIGKKE*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0099A03.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="40898" stop="40689"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IAATARLLFLWWLNLKRPVCSFVDFQLSVANTSHLDADIKTCRFMAYAISTPQHNNTLSPLFRGSAYLY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="43087" e_stop="43031"/>
            <exon e_start="41188" e_stop="41029"/>
            <exon e_start="40946" e_stop="40634"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.961" acc_prob="0.993" e_score="0.982"/>
          <exon-intron don_prob="0.976" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.982">
            <gDNA_exon_boundary e_start="43087" e_stop="43031" e_length="57"/>
          </exon>
          <intron i_serial="1" don_prob="0.961" acc_prob="0.993">
            <gDNA_intron_boundary i_start="43030" i_stop="41189" i_length="1842"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="41188" e_stop="41029" e_length="160"/>
          </exon>
          <intron i_serial="2" don_prob="0.976" acc_prob="0.999">
            <gDNA_intron_boundary i_start="41028" i_stop="40947" i_length="82"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="40946" e_stop="40634" e_length="313"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43087" stop="43031"/>
              <exon start="41188" stop="41029"/>
              <exon start="40946" stop="40668"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718903" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41188" stop="41029"/>
              <exon start="40946" stop="40638"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220580" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41185" stop="41029"/>
              <exon start="40946" stop="40634"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717138" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41184" stop="41029"/>
              <exon start="40946" stop="40634"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717131" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41184" stop="41029"/>
              <exon start="40946" stop="40634"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714906" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41183" stop="41029"/>
              <exon start="40946" stop="40635"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717132" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41183" stop="41029"/>
              <exon start="40946" stop="40640"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717136" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41183" stop="41029"/>
              <exon start="40946" stop="40646"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717130" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41182" stop="41029"/>
              <exon start="40946" stop="40647"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577759" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41179" stop="41029"/>
              <exon start="40946" stop="40636"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720701" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41158" stop="41029"/>
              <exon start="40946" stop="40730"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717135" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41136" stop="41029"/>
              <exon start="40946" stop="40653"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222950" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41085" stop="41029"/>
              <exon start="40946" stop="40653"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E223461" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41049" stop="41029"/>
              <exon start="40946" stop="40638"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218867" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40860" stop="40638"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220435" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40853" stop="40642"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E597970" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40849" stop="40636"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E593858" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40839" stop="40644"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309391" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40836" stop="40636"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308483" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40836" stop="40636"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309377" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CATCGTCTTCAGCTTTCTCTCCGTCGCTTGCCAAGTGAGTTCATCTGCAAACCCTAG : GATGTCAGAAGAAGCACCTTTCTATCCCAGAGAAAAGCTTGTTGAGAAGCAAAAGTTTTACCAAAGCGTCCACAAGCACACATACTTGAAAGGTCGTTTTGACAAGGTCACCTCAGTGGCCATTCCAGCTGCTTTGGCTGCTTCTGCTTTGTTTATGATT : GGGAGAGGGATCTACAACATGTCTCATGGCATAGGGAAGAAGGAATAAATAGCGGCTACTGCTCGACTATTGTTCCTATGGTGGCTGAATTTGAAACGACCTGTTTGTTCTTTTGTTGATTTTCAATTATCAGTAGCTAATACTAGTCACTTGGATGCTGATATTAAAACATGCCGATTTATGGCATATGCTATCAGTACTCCGCAGCATAATAACACATTATCTCCTCTGTTTAGGGGTTCTGCATATTTGTATTAAACGGTGTTTGTGTGGAAATAAGCATGTCATTTTCTGGCTCTCCTTAACCCTGTAT</gDNA_template>
            <first_frame> H  R  L  Q  L  S  L  R  R  L  P  S  E  F  I  C  K  P  *  :  D  V  R  R  S  T  F  L  S  Q  R  K  A  C  *  E  A  K  V  L  P  K  R  P  Q  A  H  I  L  E  R  S  F  *  Q  G  H  L  S  G  H  S  S  C  F  G  C  F  C  F  V  Y  D   : W  E  R  D  L  Q  H  V  S  W  H  R  E  E  G  I  N  S  G  Y  C  S  T  I  V  P  M  V  A  E  F  E  T  T  C  L  F  F  C  *  F  S  I  I  S  S  *  Y  *  S  L  G  C  *  Y  *  N  M  P  I  Y  G  I  C  Y  Q  Y  S  A  A  *  *  H  I  I  S  S  V  *  G  F  C  I  F  V  L  N  G  V  C  V  E  I  S  M  S  F  S  G  S  P  *  P  C   </first_frame>
            <second_frame>  I  V  F  S  F  L  S  V  A  C  Q  V  S  S  S  A  N  P  R :   M  S  E  E  A  P  F  Y  P  R  E  K  L  V  E  K  Q  K  F  Y  Q  S  V  H  K  H  T  Y  L  K  G  R  F  D  K  V  T  S  V  A  I  P  A  A  L  A  A  S  A  L  F  M  I  :  G  R  G  I  Y  N  M  S  H  G  I  G  K  K  E  *  I  A  A  T  A  R  L  L  F  L  W  W  L  N  L  K  R  P  V  C  S  F  V  D  F  Q  L  S  V  A  N  T  S  H  L  D  A  D  I  K  T  C  R  F  M  A  Y  A  I  S  T  P  Q  H  N  N  T  L  S  P  L  F  R  G  S  A  Y  L  Y  *  T  V  F  V  W  K  *  A  C  H  F  L  A  L  L  N  P  V  </second_frame>
            <third_frame>   S  S  S  A  F  S  P  S  L  A  K  *  V  H  L  Q  T  L   : G  C  Q  K  K  H  L  S  I  P  E  K  S  L  L  R  S  K  S  F  T  K  A  S  T  S  T  H  T  *  K  V  V  L  T  R  S  P  Q  W  P  F  Q  L  L  W  L  L  L  L  C  L  *  L :   G  E  G  S  T  T  C  L  M  A  *  G  R  R  N  K  *  R  L  L  L  D  Y  C  S  Y  G  G  *  I  *  N  D  L  F  V  L  L  L  I  F  N  Y  Q  *  L  I  L  V  T  W  M  L  I  L  K  H  A  D  L  W  H  M  L  S  V  L  R  S  I  I  T  H  Y  L  L  C  L  G  V  L  H  I  C  I  K  R  C  L  C  G  N  K  H  V  I  F  W  L  S  L  T  L  Y </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0099A03.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="43086" stop="43031"/>
                    <exon start="41188" stop="41029"/>
                    <exon start="40946" stop="40899"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>261</number_coding_nucleotides>
                  <number_encoded_amino_acids>87</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IVFSFLSVACQVSSSANPRMSEEAPFYPREKLVEKQKFYQSVHKHTYLKGRFDKVTSVAIPAALAASALFMIGRGIYNMSHGIGKKE*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0099A03.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="40898" stop="40689"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IAATARLLFLWWLNLKRPVCSFVDFQLSVANTSHLDADIKTCRFMAYAISTPQHNNTLSPLFRGSAYLY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="42648" e_stop="41857"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.984"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.984">
            <gDNA_exon_boundary e_start="42648" e_stop="41857" e_length="792"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42648" stop="41857"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541927" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42647" stop="42228"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300890" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAAGATAATAATGACATGGGTTGACTCAGTTAGCGAGATGGCTCAATTCTGTAGTTCGAGTCATATTGGGGGTAATTAAGAACCGCAGTCGATCCATAACAGTGCGTTAGAAATATGATTATTAGGTTTCTCTTTTAGATTTTGTGGTTTCTCGTGTTATTATCTATAGGAGCATCGAGCTGTAAGACTAGCTCAATTCATTTTATTAACATGAAGATGAATCATAAGGTTGCTCAGGTTAATTATTCTTAGGGAATAATTGAACAATAATACAGTCTGGTGAAAGGGTTATGTCTTCGCTGTTAAGTCAAGCCATGCTTATTGCTCATTTGGTGCAAAAATCACTTAAATCACGGAGCTAATTGGCTAATTCATTAAGACATGGTTGTGGTTGGACTTCACATATCTGTAACCATATAACCTTTGATGTTAATATGGGTTACATTACCATCCTGTTTTTTTACCCCTGATTTAACTATGCCACCAACATATGTGATCAGAGCATTTGTGTCTTTTCTTCTTAATTCTCTTAATCAGGGGAAGTGATATTATACTTGTTCAATGAAAATTTGAAGGTGCAAGTCATGGCTGTCATATGATCAGTGTGTTGCTGTTTCTTTTTGAATAGTTAAATCTTAGAGTCTTGTTTTCCTTTACACTAGATCCATTGAACTTGATTCTACTAAAAACCATCTCTCATCTCAGCCTTACAGCTCGACACAGCATCTATAATCTCTTTTCATTCTTCTTCAAGAGTTACAGTCACCATTAGAACATACCAATATTCATTTG</gDNA_template>
            <first_frame> E  D  N  N  D  M  G  *  L  S  *  R  D  G  S  I  L  *  F  E  S  Y  W  G  *  L  R  T  A  V  D  P  *  Q  C  V  R  N  M  I  I  R  F  L  F  *  I  L  W  F  L  V  L  L  S  I  G  A  S  S  C  K  T  S  S  I  H  F  I  N  M  K  M  N  H  K  V  A  Q  V  N  Y  S  *  G  I  I  E  Q  *  Y  S  L  V  K  G  L  C  L  R  C  *  V  K  P  C  L  L  L  I  W  C  K  N  H  L  N  H  G  A  N  W  L  I  H  *  D  M  V  V  V  G  L  H  I  S  V  T  I  *  P  L  M  L  I  W  V  T  L  P  S  C  F  F  T  P  D  L  T  M  P  P  T  Y  V  I  R  A  F  V  S  F  L  L  N  S  L  N  Q  G  K  *  Y  Y  T  C  S  M  K  I  *  R  C  K  S  W  L  S  Y  D  Q  C  V  A  V  S  F  *  I  V  K  S  *  S  L  V  F  L  Y  T  R  S  I  E  L  D  S  T  K  N  H  L  S  S  Q  P  Y  S  S  T  Q  H  L  *  S  L  F  I  L  L  Q  E  L  Q  S  P  L  E  H  T  N  I  H  L </first_frame>
            <second_frame>  K  I  I  M  T  W  V  D  S  V  S  E  M  A  Q  F  C  S  S  S  H  I  G  G  N  *  E  P  Q  S  I  H  N  S  A  L  E  I  *  L  L  G  F  S  F  R  F  C  G  F  S  C  Y  Y  L  *  E  H  R  A  V  R  L  A  Q  F  I  L  L  T  *  R  *  I  I  R  L  L  R  L  I  I  L  R  E  *  L  N  N  N  T  V  W  *  K  G  Y  V  F  A  V  K  S  S  H  A  Y  C  S  F  G  A  K  I  T  *  I  T  E  L  I  G  *  F  I  K  T  W  L  W  L  D  F  T  Y  L  *  P  Y  N  L  *  C  *  Y  G  L  H  Y  H  P  V  F  L  P  L  I  *  L  C  H  Q  H  M  *  S  E  H  L  C  L  F  F  L  I  L  L  I  R  G  S  D  I  I  L  V  Q  *  K  F  E  G  A  S  H  G  C  H  M  I  S  V  L  L  F  L  F  E  *  L  N  L  R  V  L  F  S  F  T  L  D  P  L  N  L  I  L  L  K  T  I  S  H  L  S  L  T  A  R  H  S  I  Y  N  L  F  S  F  F  F  K  S  Y  S  H  H  *  N  I  P  I  F  I   </second_frame>
            <third_frame>   R  *  *  *  H  G  L  T  Q  L  A  R  W  L  N  S  V  V  R  V  I  L  G  V  I  K  N  R  S  R  S  I  T  V  R  *  K  Y  D  Y  *  V  S  L  L  D  F  V  V  S  R  V  I  I  Y  R  S  I  E  L  *  D  *  L  N  S  F  Y  *  H  E  D  E  S  *  G  C  S  G  *  L  F  L  G  N  N  *  T  I  I  Q  S  G  E  R  V  M  S  S  L  L  S  Q  A  M  L  I  A  H  L  V  Q  K  S  L  K  S  R  S  *  L  A  N  S  L  R  H  G  C  G  W  T  S  H  I  C  N  H  I  T  F  D  V  N  M  G  Y  I  T  I  L  F  F  Y  P  *  F  N  Y  A  T  N  I  C  D  Q  S  I  C  V  F  S  S  *  F  S  *  S  G  E  V  I  L  Y  L  F  N  E  N  L  K  V  Q  V  M  A  V  I  *  S  V  C  C  C  F  F  L  N  S  *  I  L  E  S  C  F  P  L  H  *  I  H  *  T  *  F  Y  *  K  P  S  L  I  S  A  L  Q  L  D  T  A  S  I  I  S  F  H  S  S  S  R  V  T  V  T  I  R  T  Y  Q  Y  S  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06SLm0099A03.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="45834" PGL_stop="46227"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="45834" e_stop="46227"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.938"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.938">
            <gDNA_exon_boundary e_start="45834" e_stop="46227" e_length="394"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45834" stop="46066"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261310" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45844" stop="46212"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262800" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45898" stop="46227"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258205" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGACATGTTCCTTGCTGAAAATGGCTACAAAAGGAAGTCAATTTTTGATTTTTCAAACACTGAAAATTTTTCTTTCTCTGCATTTATTTTTCTCTCAAATAAAAAAAAAATCAAAGTGTCGATCGACTGAGTCTGTATGACTTGTTGCTGTTCTTAAGTTCGTTGAAGTTAAAAAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGGGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGAATTAAATTTCTTAAGGACACACAGTAGTTTCTGTGGACTCGGAATAATTCTTGTATTTTATATTTTTTCTGTTTCATCTTATTTGTGTTTCTGTTTATTAACCTTATAAATACAGGTTATAGAAAGAATAACA</gDNA_template>
            <first_frame> R  H  V  P  C  *  K  W  L  Q  K  E  V  N  F  *  F  F  K  H  *  K  F  F  F  L  C  I  Y  F  S  L  K  *  K  K  N  Q  S  V  D  R  L  S  L  Y  D  L  L  L  F  L  S  S  L  K  L  K  K  F  E  V  P  L  F  L  *  Q  V  *  S  V  L  S  W  E  K  L  I  H  N  L  G  Y  S  E  G  I  K  F  L  K  D  T  Q  *  F  L  W  T  R  N  N  S  C  I  L  Y  F  F  C  F  I  L  F  V  F  L  F  I  N  L  I  N  T  G  Y  R  K  N  N  </first_frame>
            <second_frame>  D  M  F  L  A  E  N  G  Y  K  R  K  S  I  F  D  F  S  N  T  E  N  F  S  F  S  A  F  I  F  L  S  N  K  K  K  I  K  V  S  I  D  *  V  C  M  T  C  C  C  S  *  V  R  *  S  *  K  S  L  R  Y  R  Y  F  F  N  R  F  N  P  F  Y  L  G  R  N  *  S  I  T  L  G  T  V  R  E  L  N  F  L  R  T  H  S  S  F  C  G  L  G  I  I  L  V  F  Y  I  F  S  V  S  S  Y  L  C  F  C  L  L  T  L  *  I  Q  V  I  E  R  I  T </second_frame>
            <third_frame>   T  C  S  L  L  K  M  A  T  K  G  S  Q  F  L  I  F  Q  T  L  K  I  F  L  S  L  H  L  F  F  S  Q  I  K  K  K  S  K  C  R  S  T  E  S  V  *  L  V  A  V  L  K  F  V  E  V  K  K  V  *  G  T  A  I  S  L  T  G  L  I  R  F  I  L  G  E  I  N  P  *  P  W  V  Q  *  G  N  *  I  S  *  G  H  T  V  V  S  V  D  S  E  *  F  L  Y  F  I  F  F  L  F  H  L  I  C  V  S  V  Y  *  P  Y  K  Y  R  L  *  K  E  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06SLm0099A03.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="47986" PGL_stop="47483"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="47986" e_stop="47483"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.982"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.982">
            <gDNA_exon_boundary e_start="47986" e_stop="47483" e_length="504"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47986" stop="47483"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326394" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTCCCCTTCAGATCCCTTTTCTTCTTCTTGTAACCAAAAAAAGAAAATGAGAGATTTTGCTTCTTGTTTCAATGAATATGCTGTTCAAGTTTCTGATAATACTTCTTGTTCTAGTTACTCAAACTCTGCTTGTATCCCTCCTTCTATAATTCCTTCAGTACAAAACACTGTGAATTGTTTGTACAAAGTCAATTTATCCAATAAAAAACATGTCTTGATCACAATTTCATGGTGCAAAACAAATGTAACACAAGGCTTGAGTGTACACTTTGGTGATGATCATCCAAATGTATTCAAACTCAACACGAATACGCGTCTTTTTAGGAAGAAGAAGGGGAGTAAATCAATGGATTTGGATCATTTTAAGGTTGAAATCATTTGGGATTTGTGTGGAGCTAGGTACTTAAGTAGTGGTCCTGAACCAATTGATGGATATTATGTACTGATCATAGTTGATTCACAACTTGGAGTTATTCTTGGTGATATGGCTGAAGAAGCATCAT</gDNA_template>
            <first_frame> F  P  L  Q  I  P  F  L  L  L  V  T  K  K  R  K  *  E  I  L  L  L  V  S  M  N  M  L  F  K  F  L  I  I  L  L  V  L  V  T  Q  T  L  L  V  S  L  L  L  *  F  L  Q  Y  K  T  L  *  I  V  C  T  K  S  I  Y  P  I  K  N  M  S  *  S  Q  F  H  G  A  K  Q  M  *  H  K  A  *  V  Y  T  L  V  M  I  I  Q  M  Y  S  N  S  T  R  I  R  V  F  L  G  R  R  R  G  V  N  Q  W  I  W  I  I  L  R  L  K  S  F  G  I  C  V  E  L  G  T  *  V  V  V  L  N  Q  L  M  D  I  M  Y  *  S  *  L  I  H  N  L  E  L  F  L  V  I  W  L  K  K  H  H </first_frame>
            <second_frame>  F  P  F  R  S  L  F  F  F  L  *  P  K  K  E  N  E  R  F  C  F  L  F  Q  *  I  C  C  S  S  F  *  *  Y  F  L  F  *  L  L  K  L  C  L  Y  P  S  F  Y  N  S  F  S  T  K  H  C  E  L  F  V  Q  S  Q  F  I  Q  *  K  T  C  L  D  H  N  F  M  V  Q  N  K  C  N  T  R  L  E  C  T  L  W  *  *  S  S  K  C  I  Q  T  Q  H  E  Y  A  S  F  *  E  E  E  G  E  *  I  N  G  F  G  S  F  *  G  *  N  H  L  G  F  V  W  S  *  V  L  K  *  W  S  *  T  N  *  W  I  L  C  T  D  H  S  *  F  T  T  W  S  Y  S  W  *  Y  G  *  R  S  I   </second_frame>
            <third_frame>   S  P  S  D  P  F  S  S  S  C  N  Q  K  K  K  M  R  D  F  A  S  C  F  N  E  Y  A  V  Q  V  S  D  N  T  S  C  S  S  Y  S  N  S  A  C  I  P  P  S  I  I  P  S  V  Q  N  T  V  N  C  L  Y  K  V  N  L  S  N  K  K  H  V  L  I  T  I  S  W  C  K  T  N  V  T  Q  G  L  S  V  H  F  G  D  D  H  P  N  V  F  K  L  N  T  N  T  R  L  F  R  K  K  K  G  S  K  S  M  D  L  D  H  F  K  V  E  I  I  W  D  L  C  G  A  R  Y  L  S  S  G  P  E  P  I  D  G  Y  Y  V  L  I  I  V  D  S  Q  L  G  V  I  L  G  D  M  A  E  E  A  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0099A03.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="47984" stop="47484"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>501</number_coding_nucleotides>
                  <number_encoded_amino_acids>167</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SPSDPFSSSCNQKKKMRDFASCFNEYAVQVSDNTSCSSYSNSACIPPSIIPSVQNTVNCLYKVNLSNKKHVLITISWCKTNVTQGLSVHFGDDHPNVFKLNTNTRLFRKKKGSKSMDLDHFKVEIIWDLCGARYLSSGPEPIDGYYVLIIVDSQLGVILGDMAEEAS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="53993" PGL_stop="50683"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="53993" e_stop="53957"/>
            <exon e_start="53621" e_stop="53369"/>
            <exon e_start="52649" e_stop="52539"/>
            <exon e_start="52384" e_stop="52248"/>
            <exon e_start="52153" e_stop="52040"/>
            <exon e_start="51833" e_stop="51634"/>
            <exon e_start="51559" e_stop="51362"/>
            <exon e_start="51248" e_stop="50683"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="0.973"/>
          <exon-intron don_prob="0.996" acc_prob="0.914" e_score="0.992"/>
          <exon-intron don_prob="0.999" acc_prob="0.976" e_score="0.964"/>
          <exon-intron don_prob="0.866" acc_prob="0.994" e_score="0.985"/>
          <exon-intron don_prob="0.768" acc_prob="0.978" e_score="0.947"/>
          <exon-intron don_prob="0.667" acc_prob="0.927" e_score="0.975"/>
          <exon-intron don_prob="1.000" acc_prob="0.819" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.973">
            <gDNA_exon_boundary e_start="53993" e_stop="53957" e_length="37"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="53956" i_stop="53622" i_length="335"/>
          </intron>
          <exon e_serial="2" e_score="0.992">
            <gDNA_exon_boundary e_start="53621" e_stop="53369" e_length="253"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.914">
            <gDNA_intron_boundary i_start="53368" i_stop="52650" i_length="719"/>
          </intron>
          <exon e_serial="3" e_score="0.964">
            <gDNA_exon_boundary e_start="52649" e_stop="52539" e_length="111"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.976">
            <gDNA_intron_boundary i_start="52538" i_stop="52385" i_length="154"/>
          </intron>
          <exon e_serial="4" e_score="0.985">
            <gDNA_exon_boundary e_start="52384" e_stop="52248" e_length="137"/>
          </exon>
          <intron i_serial="4" don_prob="0.866" acc_prob="0.994">
            <gDNA_intron_boundary i_start="52247" i_stop="52154" i_length="94"/>
          </intron>
          <exon e_serial="5" e_score="0.947">
            <gDNA_exon_boundary e_start="52153" e_stop="52040" e_length="114"/>
          </exon>
          <intron i_serial="5" don_prob="0.768" acc_prob="0.978">
            <gDNA_intron_boundary i_start="52039" i_stop="51834" i_length="206"/>
          </intron>
          <exon e_serial="6" e_score="0.975">
            <gDNA_exon_boundary e_start="51833" e_stop="51634" e_length="200"/>
          </exon>
          <intron i_serial="6" don_prob="0.667" acc_prob="0.927">
            <gDNA_intron_boundary i_start="51633" i_stop="51560" i_length="74"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="51559" e_stop="51362" e_length="198"/>
          </exon>
          <intron i_serial="7" don_prob="1.000" acc_prob="0.819">
            <gDNA_intron_boundary i_start="51361" i_stop="51249" i_length="113"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="51248" e_stop="50683" e_length="566"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53993" stop="53957"/>
              <exon start="53621" stop="53369"/>
              <exon start="52649" stop="52539"/>
              <exon start="52384" stop="52248"/>
              <exon start="52153" stop="52040"/>
              <exon start="51833" stop="51783"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E425382" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53993" stop="53957"/>
              <exon start="53621" stop="53369"/>
              <exon start="52649" stop="52539"/>
              <exon start="52384" stop="52248"/>
              <exon start="52153" stop="52081"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E454519" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53993" stop="53957"/>
              <exon start="53621" stop="53369"/>
              <exon start="52649" stop="52539"/>
              <exon start="52384" stop="52248"/>
              <exon start="52153" stop="52136"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E448605" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52110" stop="52040"/>
              <exon start="51833" stop="51634"/>
              <exon start="51559" stop="51409"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E425383" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51538" stop="51362"/>
              <exon start="51248" stop="50683"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543115" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51538" stop="51362"/>
              <exon start="51248" stop="50683"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543113" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51538" stop="51362"/>
              <exon start="51248" stop="50683"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543114" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51537" stop="51362"/>
              <exon start="51248" stop="50934"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303354" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51484" stop="51362"/>
              <exon start="51248" stop="50683"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543112" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCAAGTTCTTGATGACTCTACTGATCCTCTCATTAAG : GATTTGGTAGAGAAAGAATGCTTAAGGTGGGCAAACAAAGGGATTAACATTAGATACCAAATTAGAGAGAACAGAGGAGGTTACAAAGCTGGAGCTCTTAAAGAAGGATTAAAACGTGATTATGTTAAAGATTGCGAATACGTCGTCATTTTCGACGCTGATTTCCGGCCTGAACCGGATTTTCTCCGGCGAGCTATCCCTTTTCTTGTACATAACTCGGAAATTGCACTCGTTCAAGGTCGTTGGCGTTTTG : TGAATGCAAATGAGTGCTTATTAACAAGAATGCAAGAGATGTCATTAGATTATCATTTCACTGTAGAGCAAGAAGTGGGTTCATCCACTCATGCATTCTTTGGGTTCAATG : GAACAGGAGGTGTGTGGAGAATAGCAGCAATTAATGAAGCTGGTGGATGGAAAGACAGAACAACTGTAGAGGATATGGACCTTGCAGTTAGAGCTAGTCTTAAAGGCTGGAAGTTTCTTTATCTTGGTGATCTCCAG : GTGAAAAGTGAACTACCTAGTACATTCAAAGCCTTTCGTTTTCAGCAGCATCGTTGGTCGTGTGGTCCTGCAAATTTGTTCAGGAAAATGGTTATGGAGATTGTTAGGAATAAG : AGAGTAAACATTTGGAAGAAGTTTTATGTGATCTACAGCTTCTTCTTCGTCCGGAAGATCATAGCTCACATGGTCACTTTTTTCTTCTTCTGTGTTGTTCTTCCGTTGAGCCTTTTAGTTCCTGAAGTTGAAATCCCTACATGGGGTGCCATCTACATCCCCTGCATTATCACCACATTGAATTCTGTTGGAACTCCAAG : GTCAATTCATCTACTCTTCTACTGGATTCTCTTCGAGAATGTGATGGCTTTCCAACGAACCAAGGCTACATTTATCGGCTTGCTAGAAGCAAAAAGAGCTAATGAATGGGTTGTCACGGAGAAACTAGGTGATGCTCTCAAGAACAAAGAAAAAACAAAACAAACCAAAAAACCCCGAGGATCTCTATTTGGAGACAG : GATTCTTCCACAAGAATTGGGATTCGCAGTTTTCCTTTTCTTTTGTGGATGCTATGATGTCCTCTATGGGAAAAGCCAGTACTTTCTTTACATCTTCCTCCAAGTCATCACTTTCACAATTGCTGGATTTGGCTACATTGGCACCATCGTCCCCTCGTAATAGCAGAAACTTCAAAAAAAAAAAAATCGTCCTGTATTGACTCGTGTACACTAAAATAAATTTTTGAGTGCTTTCGTGCAACCATTTTCAAAGGATGCCAAACTCAAAATCTCCGGATAATTTTCTTAGAGATACTGTGTTGGTAAGGAGGAGCGAAGAGCAAAGAGATATCTATATTAAGCCCAGAACACAGAAGAAGACGATAAAACAGATGAATTAGTGTAGATAGATTGTATTTTTCTTCTATTGAAGCTCTTTAGTTGTGTGACATTGTAATTCTATAGCTTGCAAGTCATTTTTCTTTCTGTTCTTGTTCTCTTTGTCTCTGTCTTTCAAGAGGGACAAAAGCTCAGGATATTGCGAAAAGGACAAAACTTATAATCAAATTTTTGTCATTCTAGCTTCA</gDNA_template>
            <first_frame> S  S  S  *  *  L  Y  *  S  S  H  *   : G  F  G  R  E  R  M  L  K  V  G  K  Q  R  D  *  H  *  I  P  N  *  R  E  Q  R  R  L  Q  S  W  S  S  *  R  R  I  K  T  *  L  C  *  R  L  R  I  R  R  H  F  R  R  *  F  P  A  *  T  G  F  S  P  A  S  Y  P  F  S  C  T  *  L  G  N  C  T  R  S  R  S  L  A  F  C :   E  C  K  *  V  L  I  N  K  N  A  R  D  V  I  R  L  S  F  H  C  R  A  R  S  G  F  I  H  S  C  I  L  W  V  Q  W :   N  R  R  C  V  E  N  S  S  N  *  *  S  W  W  M  E  R  Q  N  N  C  R  G  Y  G  P  C  S  *  S  *  S  *  R  L  E  V  S  L  S  W  *  S  P   : G  E  K  *  T  T  *  Y  I  Q  S  L  S  F  S  A  A  S  L  V  V  W  S  C  K  F  V  Q  E  N  G  Y  G  D  C  *  E  *   : E  S  K  H  L  E  E  V  L  C  D  L  Q  L  L  L  R  P  E  D  H  S  S  H  G  H  F  F  L  L  L  C  C  S  S  V  E  P  F  S  S  *  S  *  N  P  Y  M  G  C  H  L  H  P  L  H  Y  H  H  I  E  F  C  W  N  S  K  :  V  N  S  S  T  L  L  L  D  S  L  R  E  C  D  G  F  P  T  N  Q  G  Y  I  Y  R  L  A  R  S  K  K  S  *  *  M  G  C  H  G  E  T  R  *  C  S  Q  E  Q  R  K  N  K  T  N  Q  K  T  P  R  I  S  I  W  R  Q  :  D  S  S  T  R  I  G  I  R  S  F  P  F  L  L  W  M  L  *  C  P  L  W  E  K  P  V  L  S  L  H  L  P  P  S  H  H  F  H  N  C  W  I  W  L  H  W  H  H  R  P  L  V  I  A  E  T  S  K  K  K  K  S  S  C  I  D  S  C  T  L  K  *  I  F  E  C  F  R  A  T  I  F  K  G  C  Q  T  Q  N  L  R  I  I  F  L  E  I  L  C  W  *  G  G  A  K  S  K  E  I  S  I  L  S  P  E  H  R  R  R  R  *  N  R  *  I  S  V  D  R  L  Y  F  S  S  I  E  A  L  *  L  C  D  I  V  I  L  *  L  A  S  H  F  S  F  C  S  C  S  L  C  L  C  L  S  R  G  T  K  A  Q  D  I  A  K  R  T  K  L  I  I  K  F  L  S  F  *  L   </first_frame>
            <second_frame>  Q  V  L  D  D  S  T  D  P  L  I  K  :  D  L  V  E  K  E  C  L  R  W  A  N  K  G  I  N  I  R  Y  Q  I  R  E  N  R  G  G  Y  K  A  G  A  L  K  E  G  L  K  R  D  Y  V  K  D  C  E  Y  V  V  I  F  D  A  D  F  R  P  E  P  D  F  L  R  R  A  I  P  F  L  V  H  N  S  E  I  A  L  V  Q  G  R  W  R  F   : V  N  A  N  E  C  L  L  T  R  M  Q  E  M  S  L  D  Y  H  F  T  V  E  Q  E  V  G  S  S  T  H  A  F  F  G  F  N   : G  T  G  G  V  W  R  I  A  A  I  N  E  A  G  G  W  K  D  R  T  T  V  E  D  M  D  L  A  V  R  A  S  L  K  G  W  K  F  L  Y  L  G  D  L  Q  :  V  K  S  E  L  P  S  T  F  K  A  F  R  F  Q  Q  H  R  W  S  C  G  P  A  N  L  F  R  K  M  V  M  E  I  V  R  N  K  :  R  V  N  I  W  K  K  F  Y  V  I  Y  S  F  F  F  V  R  K  I  I  A  H  M  V  T  F  F  F  F  C  V  V  L  P  L  S  L  L  V  P  E  V  E  I  P  T  W  G  A  I  Y  I  P  C  I  I  T  T  L  N  S  V  G  T  P  R :   S  I  H  L  L  F  Y  W  I  L  F  E  N  V  M  A  F  Q  R  T  K  A  T  F  I  G  L  L  E  A  K  R  A  N  E  W  V  V  T  E  K  L  G  D  A  L  K  N  K  E  K  T  K  Q  T  K  K  P  R  G  S  L  F  G  D  R :   I  L  P  Q  E  L  G  F  A  V  F  L  F  F  C  G  C  Y  D  V  L  Y  G  K  S  Q  Y  F  L  Y  I  F  L  Q  V  I  T  F  T  I  A  G  F  G  Y  I  G  T  I  V  P  S  *  *  Q  K  L  Q  K  K  K  N  R  P  V  L  T  R  V  H  *  N  K  F  L  S  A  F  V  Q  P  F  S  K  D  A  K  L  K  I  S  G  *  F  S  *  R  Y  C  V  G  K  E  E  R  R  A  K  R  Y  L  Y  *  A  Q  N  T  E  E  D  D  K  T  D  E  L  V  *  I  D  C  I  F  L  L  L  K  L  F  S  C  V  T  L  *  F  Y  S  L  Q  V  I  F  L  S  V  L  V  L  F  V  S  V  F  Q  E  G  Q  K  L  R  I  L  R  K  G  Q  N  L  *  S  N  F  C  H  S  S  F  </second_frame>
            <third_frame>   K  F  L  M  T  L  L  I  L  S  L  R :   I  W  *  R  K  N  A  *  G  G  Q  T  K  G  L  T  L  D  T  K  L  E  R  T  E  E  V  T  K  L  E  L  L  K  K  D  *  N  V  I  M  L  K  I  A  N  T  S  S  F  S  T  L  I  S  G  L  N  R  I  F  S  G  E  L  S  L  F  L  Y  I  T  R  K  L  H  S  F  K  V  V  G  V  L  :  *  M  Q  M  S  A  Y  *  Q  E  C  K  R  C  H  *  I  I  I  S  L  *  S  K  K  W  V  H  P  L  M  H  S  L  G  S  M  :  E  Q  E  V  C  G  E  *  Q  Q  L  M  K  L  V  D  G  K  T  E  Q  L  *  R  I  W  T  L  Q  L  E  L  V  L  K  A  G  S  F  F  I  L  V  I  S  R :   *  K  V  N  Y  L  V  H  S  K  P  F  V  F  S  S  I  V  G  R  V  V  L  Q  I  C  S  G  K  W  L  W  R  L  L  G  I  R :   E  *  T  F  G  R  S  F  M  *  S  T  A  S  S  S  S  G  R  S  *  L  T  W  S  L  F  S  S  S  V  L  F  F  R  *  A  F  *  F  L  K  L  K  S  L  H  G  V  P  S  T  S  P  A  L  S  P  H  *  I  L  L  E  L  Q   : G  Q  F  I  Y  S  S  T  G  F  S  S  R  M  *  W  L  S  N  E  P  R  L  H  L  S  A  C  *  K  Q  K  E  L  M  N  G  L  S  R  R  N  *  V  M  L  S  R  T  K  K  K  Q  N  K  P  K  N  P  E  D  L  Y  L  E  T   : G  F  F  H  K  N  W  D  S  Q  F  S  F  S  F  V  D  A  M  M  S  S  M  G  K  A  S  T  F  F  T  S  S  S  K  S  S  L  S  Q  L  L  D  L  A  T  L  A  P  S  S  P  R  N  S  R  N  F  K  K  K  K  I  V  L  Y  *  L  V  Y  T  K  I  N  F  *  V  L  S  C  N  H  F  Q  R  M  P  N  S  K  S  P  D  N  F  L  R  D  T  V  L  V  R  R  S  E  E  Q  R  D  I  Y  I  K  P  R  T  Q  K  K  T  I  K  Q  M  N  *  C  R  *  I  V  F  F  F  Y  *  S  S  L  V  V  *  H  C  N  S  I  A  C  K  S  F  F  F  L  F  L  F  S  L  S  L  S  F  K  R  D  K  S  S  G  Y  C  E  K  D  K  T  Y  N  Q  I  F  V  I  L  A  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0099A03.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="53992" stop="53957"/>
                    <exon start="53621" stop="53369"/>
                    <exon start="52649" stop="52539"/>
                    <exon start="52384" stop="52248"/>
                    <exon start="52153" stop="52040"/>
                    <exon start="51833" stop="51634"/>
                    <exon start="51559" stop="51362"/>
                    <exon start="51248" stop="51089"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1206</number_coding_nucleotides>
                  <number_encoded_amino_acids>402</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QVLDDSTDPLIKDLVEKECLRWANKGINIRYQIRENRGGYKAGALKEGLKRDYVKDCEYVVIFDADFRPEPDFLRRAIPFLVHNSEIALVQGRWRFVNANECLLTRMQEMSLDYHFTVEQEVGSSTHAFFGFNGTGGVWRIAAINEAGGWKDRTTVEDMDLAVRASLKGWKFLYLGDLQVKSELPSTFKAFRFQQHRWSCGPANLFRKMVMEIVRNKRVNIWKKFYVIYSFFFVRKIIAHMVTFFFFCVVLPLSLLVPEVEIPTWGAIYIPCIITTLNSVGTPRSIHLLFYWILFENVMAFQRTKATFIGLLEAKRANEWVVTEKLGDALKNKEKTKQTKKPRGSLFGDRILPQELGFAVFLFFCGCYDVLYGKSQYFLYIFLQVITFTIAGFGYIGTIVPS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 257 chains have been computed
$ 
$ memory statistics:
$ 339496 bytes spliced alignments in total
$ 133 spliced alignments have been stored
$ 2552 bytes was the average size of a spliced alignment
$ 22720 bytes predicted gene locations in total
$ 13 predicted gene locations have been stored
$ 1747 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 297 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-16 08:24:52
-->
