<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-16 08:24:59"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U339935" ref_strand="+" ref_description="SGN-U339935        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: AT2G27690.1 | Symbol: None | cytochrome P450, putative, similar to Cytochrome P450 94A1  (P450-dependent fatty acid omega-hydroxylase) (SP:O81117) {Vicia sativa}; contains Pfam profile: PF00067 cytochrome P450; supported by cDNA: gi_13877668 | chr2:11816383-11818292 FORWARD | Aliases: F15K20.21, F15K20_21 (evalue: 1e-71, score=266) genbank/nr: cytochrome(evalue: 2e-76, score=288)">
      <seq>gagtgtgagatttgcaaatgctatttgaactctacatggtctttagagttcaaaaatctttgcgattggtactcttatctactcaaaaaatcacccactggtacaatacatgtacacgttcttggaaatgtcattacatcaaatccaaacaacgttgaatacatgcttaaaacaaatttcgataattttcctaaaggaaaacagttttctactatcctcggcgatttattaggccgaggaattttcgccgtagacggcgaaatgtggaagtttcaacggaagatggcaagtttagaactcggacgcgtatcgatacgctcgtacgctttcgatatcgtcagtgacgaaattagaaaccggttgattccgcttttggaaagtaatatccatactgttttggacttacaagatgttttacgacgtttttcgttcgatagcatctgtaaattttcatttggtatggatcctggttgtttgaaattatcattaccagattcagatcttcaagagtcatttgatttagcttcgaaattgtctgctgaaagagctatgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06SLm0099A03.1" temp_strand="+" temp_description="C06SLm0099A03.1  AC226730.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0099A03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="5698" stop="6851"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5998" g_stop="6551" g_length="554"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="554" r_length="554" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0099A03.1" gen_strand="+" ref_id="SGN-U339935" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0099A03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U339935" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5998" e_stop="6551"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGTGTGAGATTTGCAAAAGCTATTTGAACTCTACATGGTCTTTAGAGTTCAAAAATCTTTGCGATTGGTACTCTTATCTACTCAAAAAATCACCCACTGGTACAATACATGTACACGTTCTTGGAAATGTCATTACATCAAATCCAAACAACGTTGAATACATGCTTAAAACAAATTTCGATAATTTTCCTAAAGGAAAACAGTTTTCTACTATCCTCGGCGATTTATTAGGCCGAGGAATTTTCGCCGTAGACGGCGAAATGTGGAAGTTTCAACGGAAGATGGCAAGTTTAGAACTCGGACGCGTATCGATACGCTCGTACGCTTTCGATATCGTCAGTGACGAAATTAGAAACCGGTTGATTCCGCTTTTGGAAAGTAATATCCATACTGTTTTGGACTTACAAGATGTTTTACGACGTTTTTCGTTCGATAGCATCTGTAAATTTTCATTTGGTATGGATCCTGGTTGTTTGAAATTATCATTACCAGATTCAGATCTTCAAGAGTCATTTGATTTAGCTTCGAAATTGTCTGCTGAAAGAGCTATGAC</genome_strand>
        <mrna_strand>GAGTGTGAGATTTGCAAATGCTATTTGAACTCTACATGGTCTTTAGAGTTCAAAAATCTTTGCGATTGGTACTCTTATCTACTCAAAAAATCACCCACTGGTACAATACATGTACACGTTCTTGGAAATGTCATTACATCAAATCCAAACAACGTTGAATACATGCTTAAAACAAATTTCGATAATTTTCCTAAAGGAAAACAGTTTTCTACTATCCTCGGCGATTTATTAGGCCGAGGAATTTTCGCCGTAGACGGCGAAATGTGGAAGTTTCAACGGAAGATGGCAAGTTTAGAACTCGGACGCGTATCGATACGCTCGTACGCTTTCGATATCGTCAGTGACGAAATTAGAAACCGGTTGATTCCGCTTTTGGAAAGTAATATCCATACTGTTTTGGACTTACAAGATGTTTTACGACGTTTTTCGTTCGATAGCATCTGTAAATTTTCATTTGGTATGGATCCTGGTTGTTTGAAATTATCATTACCAGATTCAGATCTTCAAGAGTCATTTGATTTAGCTTCGAAATTGTCTGCTGAAAGAGCTATGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U324087" ref_strand="+" ref_description="SGN-U324087        Tomato 200607 #1 [6 ESTs aligned] arabidopsis/peptide: AT2G27690.1 | Symbol: None | cytochrome P450, putative, similar to Cytochrome P450 94A1  (P450-dependent fatty acid omega-hydroxylase) (SP:O81117) {Vicia sativa}; contains Pfam profile: PF00067 cytochrome P450; supported by cDNA: gi_13877668 | chr2:11816383-11818292 FORWARD | Aliases: F15K20.21, F15K20_21 (evalue: 2e-86, score=316) genbank/nr: cytochrome(evalue: 3e-95, score=351)">
      <seq>gacggtttcacctttagtgtggaaaattaaaaggagtttgaatattggatcagaaaagaagctaaaagaagcgatcgaaaaagttgatgtacttgctgaggaggtaataattcagaaaagaaaaaacgatttttcttcccaaaatgacgttttgtctaggttcatgaggaatattgatgatgataaactccttagggacattatcgtcagttttctattggcgggtagagacactgttgcgtccggactgactacttttttttggctactagctcaacatccacatgttattaatgaaattcgagctgagtcgaatcgagtaatgggaaaaacagtaaatggaactctagctactttcgaaggaattcgggaaatgcattttttgactgcagctatacatgagagtattaggctatttccgcctgttcaatttgattccaagttttgtcaagaagacgatacgctccctgatggtacgttcgtggctaaagggacgagggtgacgtatcatccatatgcaatggggaggatggagggtatttggggtaaagattgtttagaattcaagccagaaagatggttggaagacggggtttttaaggcacagtgtccttttaaatatcccgtttttcaaggtggtgttagggtttgtttgggtaaagatttatctattgtggaaatgaagagtgttgctttggctttgattaggcaattcgactttcaagttcatttggctaaagaccaggcacctaagttcatgccgggattgacagccaccgtgagaggcggacttcccatcatggttcaaaaaagacgagaacaatagacactgacacgaattcaagatttagagtcagtattgtacaacttttgtaattaattattagtttatacttctatcttttagctagcgttttaggcttagagcaagctgaactatgtgtatatagacgactaacgtcaaaaaagcttatgacttatgatgatataataacaaaattgttcaaannaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06SLm0099A03.1" temp_strand="+" temp_description="C06SLm0099A03.1  AC226730.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0099A03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="6249" stop="7862"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6549" g_stop="7565" g_length="1017"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1017" r_length="1017" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1018" polyA_stop="1054"/>
      <MATCH_line gen_id="C06SLm0099A03.1" gen_strand="+" ref_id="SGN-U324087" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>1017</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0099A03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U324087" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6549" e_stop="7565"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACGGTTTCACCTTTAGTGTGGAAAATTAAAAGGAGTTTGAATATTGGATCAGAAAAGAAGCTAAAAGAAGCGATCGAAAAAGTTGATGTACTTGCTGAGGAGGTAATAATTCAGAAAAGAAAAAACGATTTTTCTTCCCAAAATGACGTTTTGTCTAGGTTCATGAGGAATATTGATGATGATAAACTCCTTAGGGACATTATCGTCAGTTTTCTATTGGCGGGTAGAGACACTGTTGCGTCCGGACTGACTACTTTTTTTTGGCTACTAGCTCAACATCCACATGTTATTAATGAAATTCGAGCTGAGTCGAATCGAGTAATGGGAAAAACAGTAAATGGAACTCTAGCTACTTTCGAAGGAATTCGGGAAATGCATTTTTTGACTGCAGCTATACATGAGAGTATTAGGCTATTTCCGCCTGTTCAATTTGATTCCAAGTTTTGTCAAGAAGACGATACGCTCCCTGATGGTACGTTCGTGGCTAAAGGGACGAGGGTGACGTATCATCCATATGCAATGGGGAGGATGGAGGGTATTTGGGGTAAAGATTGTTTAGAATTCAAGCCAGAAAGATGGTTGGAAGACGGGGTTTTTAAGGCACAGTGTCCTTTTAAATATCCCGTTTTTCAAGGTGGTGTTAGGGTTTGTTTGGGTAAAGATTTATCTATTGTGGAAATGAAGAGTGTTGCTTTGGCTTTGATTAGGCAATTCGACTTTCAAGTTCATTTGGCTAAAGACCAGGCACCTAAGTTCATGCCGGGATTGACAGCCACCGTGAGAGGCGGACTTCCCATCATGGTTCAAAAAAGACGAGAACAATAGACACTGACACGAATTCAAGATTTAGAGTCAGTATTGTACAACTTTTGTAATTAATTATTAGTTTATACTTCTATCTTTTAGCTAGCGTTTTAGGCTTAGAGCAAGCTGAACTATGTGTATATAGACGACTAACGTCAAAAAAGCTTATGACTTATGATGATATAATAACAAAATTGTTCAAAAAAATATTG</genome_strand>
        <mrna_strand>GACGGTTTCACCTTTAGTGTGGAAAATTAAAAGGAGTTTGAATATTGGATCAGAAAAGAAGCTAAAAGAAGCGATCGAAAAAGTTGATGTACTTGCTGAGGAGGTAATAATTCAGAAAAGAAAAAACGATTTTTCTTCCCAAAATGACGTTTTGTCTAGGTTCATGAGGAATATTGATGATGATAAACTCCTTAGGGACATTATCGTCAGTTTTCTATTGGCGGGTAGAGACACTGTTGCGTCCGGACTGACTACTTTTTTTTGGCTACTAGCTCAACATCCACATGTTATTAATGAAATTCGAGCTGAGTCGAATCGAGTAATGGGAAAAACAGTAAATGGAACTCTAGCTACTTTCGAAGGAATTCGGGAAATGCATTTTTTGACTGCAGCTATACATGAGAGTATTAGGCTATTTCCGCCTGTTCAATTTGATTCCAAGTTTTGTCAAGAAGACGATACGCTCCCTGATGGTACGTTCGTGGCTAAAGGGACGAGGGTGACGTATCATCCATATGCAATGGGGAGGATGGAGGGTATTTGGGGTAAAGATTGTTTAGAATTCAAGCCAGAAAGATGGTTGGAAGACGGGGTTTTTAAGGCACAGTGTCCTTTTAAATATCCCGTTTTTCAAGGTGGTGTTAGGGTTTGTTTGGGTAAAGATTTATCTATTGTGGAAATGAAGAGTGTTGCTTTGGCTTTGATTAGGCAATTCGACTTTCAAGTTCATTTGGCTAAAGACCAGGCACCTAAGTTCATGCCGGGATTGACAGCCACCGTGAGAGGCGGACTTCCCATCATGGTTCAAAAAAGACGAGAACAATAGACACTGACACGAATTCAAGATTTAGAGTCAGTATTGTACAACTTTTGTAATTAATTATTAGTTTATACTTCTATCTTTTAGCTAGCGTTTTAGGCTTAGAGCAAGCTGAACTATGTGTATATAGACGACTAACGTCAAAAAAGCTTATGACTTATGATGATATAATAACAAAATTGTTCAAANNAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U341961" ref_strand="+" ref_description="SGN-U341961        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>ttgctcgtttctcagtttgctgcacacaagaagacaagaagcacaaataatcaatagcaaatgtacgcagcaaaagaagccaagatcgagtccaagatcgagtaaaatgggtctgtcaagtaatcaagaaaatagagtgatttgtcaaagccaaaaataatatattaaaggtataagttgatacaaataaggaaaaccttaaatatattagtaaggaaagaagttgtatataataaggattgtgctttaaaagggaatccttgtttaataataacttccttatcttatctgataaggactgaaggcaaaaggaactctataagaagaagaagacgctgatgaagaaaatgaggacttcatgcagagaacaagggagaattattcatcaaattgaagtcttcaaggttgataggattactacgtgtaaaacattcttgagtaagaaggttttatcgtgtagaactatttgtcttgtttttgttcttaattgtagtttacagtttattgtacaaagggtgggtttggctctttgtagggttgagtgttagtaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06SLm0099A03.1" temp_strand="-" temp_description="C06SLm0099A03.1  AC226730.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0099A03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="15490" stop="14365"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15183" g_stop="14665" g_length="519"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="552" r_length="519" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0099A03.1" gen_strand="-" ref_id="SGN-U341961" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="0.940" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0099A03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U341961" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15183" e_stop="14665"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAGAAGCACAAATAATCAATAGCAAATGTACGCAGCAAAAGAAGCCAAAATCGAGTCCAAGATCGAGTAAAATGGGTCAGCCAAGTAATCAAGAAAATAGAGTTATTTGTCAAAGCCAAAAATAATATATTAAAGGTATAAGTTGATACAAATAAGGAAAACTTTAAATATATTATTAAGGAAGGAAGTTGTATATAATAAGGATTGTACTTTAAAAGGGAATCCTTGTTTAATAATAACTTCCTTACCTTATCTGATAAGGACTGAAGGCAAAAGGAACTCTATAAGAAGAAGAAGACGCGTATGAAGAATACGACGACTTCACGCAGAGAACAAGGGAGAATTATTCATCAAATTGAAGTCTTCAAGGTTGATAGGATTACTACGTTTAAAACATTCTTGAGTAAGAAGGTTTTATCGTGTAGAACTATTTGTCTTGTTTTTGTTCTTAATTGTAGTTTACAGTTTATTGTACAAAGGGTGGGTTTGACTCTTTGTAGGGTTGAGTGTTAGTAAG</genome_strand>
        <mrna_strand>ACAAGAAGCACAAATAATCAATAGCAAATGTACGCAGCAAAAGAAGCCAAGATCGAGTCCAAGATCGAGTAAAATGGGTCTGTCAAGTAATCAAGAAAATAGAGTGATTTGTCAAAGCCAAAAATAATATATTAAAGGTATAAGTTGATACAAATAAGGAAAACCTTAAATATATTAGTAAGGAAAGAAGTTGTATATAATAAGGATTGTGCTTTAAAAGGGAATCCTTGTTTAATAATAACTTCCTTATCTTATCTGATAAGGACTGAAGGCAAAAGGAACTCTATAAGAAGAAGAAGACGCTGATGAAGAAAATGAGGACTTCATGCAGAGAACAAGGGAGAATTATTCATCAAATTGAAGTCTTCAAGGTTGATAGGATTACTACGTGTAAAACATTCTTGAGTAAGAAGGTTTTATCGTGTAGAACTATTTGTCTTGTTTTTGTTCTTAATTGTAGTTTACAGTTTATTGTACAAAGGGTGGGTTTGGCTCTTTGTAGGGTTGAGTGTTAGTAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U338791" ref_strand="+" ref_description="SGN-U338791        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>gttttttttttttttttttgaaagacatattataatttcaactgtatgcaaatgctttccatgaaattgctaagcacaagcttaatctgtacgttgacaataaacctcctaacttacactctcaaggggaacaacaaatggaaaaggggattcttgataaactgatttcttcgacttctaagcgaaaagactgaaaccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06SLm0099A03.1" temp_strand="-" temp_description="C06SLm0099A03.1  AC226730.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0099A03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="42074" stop="22472"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23450" g_stop="23435" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="16" r_length="16" r_score="0.625"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23434" i_stop="22955" i_length="480">
            <donor d_prob="0.198" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22954" g_stop="22772" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="199" r_length="183" r_score="0.913"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0099A03.1" gen_strand="-" ref_id="SGN-U338791" ref_strand="+">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>199</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0099A03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U338791" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23450" e_stop="23435"/>
          <exon e_start="22954" e_stop="22772"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTGGCTTTTCTTTGTAAGTGTTAGAAAATTATTTCACTAAAATAATAACTCAATTTCACAATTAATTGTTGATTTTCCTTGGACTTTTTCCATTGTTGAATTATGAGAAAACGAGTTGTGATGGTGAAAGAGATGTATGTACAGGGACATTTTATAAAAAAAAATTGAAGAGTTTTTCCTTTATTTTGGTCATAACTTTTTAGTTGTTACTTTGACTCAAGAAATAACTCAAAATGCCATATATGCACCATTTATTTGACAAATCTCTATGTCGGCACGAGTGTACTACACTCATTTTATATTTTTAGCTGATTGTCAAAAAAATGCTCAAATGGTTATAATTCGATTCGGTAGAGATGTTTAATAGGTACATGTTGTAGTTAAGGTGTTCAAATGAAATATACGAACAACTTTAAGGGGCTGTAGATGACTTAAGCCATTGTTTTAATATTGTAAGATCAAAAAGGGTAGATATATTGAACCAAGCTGAACATTTGAAATACATATTATAATTTCAACTGTTTGCAAATGTTTTCCATGAAAATTCTAAGTTCAAGCAAAATCTGTAAGTAGACAATAAACCTCCTAAAATACACTCTCAAGGGGAACAACAAATGGAAAAGGGGATACTTCATAAACTGATTTCTTCGACTTCTAATCGAAAAGACTGAAACCC</genome_strand>
        <mrna_strand>GTTTTTTTTTTTTTTT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGAAAGACATATTATAATTTCAACTGTATGCAAATGCTTTCCATGAAATTGCTAAGCACAAGCTTAATCTGTACGTTGACAATAAACCTCCTAACTTACACTCTCAAGGGGAACAACAAATGGAAAAGGGGATTCTTGATAAACTGATTTCTTCGACTTCTAAGCGAAAAGACTGAAACCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U346052" ref_strand="+" ref_description="SGN-U346052        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: hypothetical(evalue: 1e-10, score=70.5)">
      <seq>aaaatccaaagtagcaattttcggtaaagaattactcacggtgcatacgatggatgcttccgccgcagcgcggccacctttggctacccacttgcaaccatcacattctcaggtatatataactgccgacaatctccgcacgttctccgactccctcacggctttccaacaatgcttgaatgatctgcaacgacacatgaattcaatacaaacctcaatcaactctatgctgcttccccctcaatctttacctgcctcatcatcatcaccagcagttgcaaccccagccccggccctggcccctgagccagaatcatcttgggactctgacccctctgaagacctagaagaagaagaagaagtcaaccaagaggagaaagtagtgaagggagagggaggcgaggaagtgaattcgcctcacttagaactgaaattgcctccttcagaactgaaatcgcctcgtttggaactgcaattgcctccttcagaactgaaatcgcctcgtttggaactgcaattgcctccttcagaactgaaatcgcctcgtttggaactgaaattgcctccttcagaactgaaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06SLm0099A03.1" temp_strand="+" temp_description="C06SLm0099A03.1  AC226730.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0099A03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="25083" stop="26264"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25383" g_stop="25964" g_length="582"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="582" r_length="582" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0099A03.1" gen_strand="+" ref_id="SGN-U346052" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>582</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0099A03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U346052" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25383" e_stop="25964"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATCCAAAGTAGCAATTTTCGGTAAAGAATTACTCACGGTGCATACGATGGATGCTTCCGCCGCAGCGCGGCCACCTTTGGCTACCCACTTGCAACCATCACATTCTCAGGTATATATAACTGCCGACAATCTCCGCACGTTCTCCGACTCCCTCACGGCTTTCCAACAATGCTTGAATGATCTGCAACGACACATGAATTCAATACAAACCTCAATCAACTCTATGCTGCTTCCCCCTCAATCTTTACCTGCCTCATCATCATCACCAGCAGTTGCAACCCCAGCCCCGGCCCTGGCCCCTGAGCCAGAATCATCTTGGGACTCTGACCCCTCTGAAGACCTAGAAGAAGAAGAAGAAGTCAACCAAGAGGAGAAAGTAGTGAAGGGAGAGGGAGGCGAGGAAGTGAATTCGCCTCACTTAGAACTGAAATTGCCTCCTTCAGAACTGAAATCGCCTCGTTTGGAACTGCAATTGCCTCCTTCAGAACTGAAATCGCCTCGTTTGGAACTGCAATTGCCTCCTTCAGAACTGAAATCGCCTCGTTTGGAACTGAAATTGCCTCCTTCAGAACTGAAATC</genome_strand>
        <mrna_strand>AAAATCCAAAGTAGCAATTTTCGGTAAAGAATTACTCACGGTGCATACGATGGATGCTTCCGCCGCAGCGCGGCCACCTTTGGCTACCCACTTGCAACCATCACATTCTCAGGTATATATAACTGCCGACAATCTCCGCACGTTCTCCGACTCCCTCACGGCTTTCCAACAATGCTTGAATGATCTGCAACGACACATGAATTCAATACAAACCTCAATCAACTCTATGCTGCTTCCCCCTCAATCTTTACCTGCCTCATCATCATCACCAGCAGTTGCAACCCCAGCCCCGGCCCTGGCCCCTGAGCCAGAATCATCTTGGGACTCTGACCCCTCTGAAGACCTAGAAGAAGAAGAAGAAGTCAACCAAGAGGAGAAAGTAGTGAAGGGAGAGGGAGGCGAGGAAGTGAATTCGCCTCACTTAGAACTGAAATTGCCTCCTTCAGAACTGAAATCGCCTCGTTTGGAACTGCAATTGCCTCCTTCAGAACTGAAATCGCCTCGTTTGGAACTGCAATTGCCTCCTTCAGAACTGAAATCGCCTCGTTTGGAACTGAAATTGCCTCCTTCAGAACTGAAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U346844" ref_strand="+" ref_description="SGN-U346844        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | FRIGIDA protein, identical to Swiss-Prot:Q9FDW0 FRIGIDA protein (Arabidopsis thaliana) | chr4:269026-271503 FORWARD | Aliases: F6N23.25, F6N23_25(evalue: 7e-11, score=65.1) genbank/nr: gi|62736883|gb|AAX97727.1| FRIGIDA [Arabidopsis thaliana] (evalue: 3e-30, score=135)">
      <seq>acctttgggtcggggaaggaaggctaaagtattgattttggagtgcttgttgttaatgattggaatctacgataaggaaatcgagcttgagaattgggtgaaggaagaggcggagcatacagctttagcatggttggagaggatgaattctgaaggaggaaagcctcaagaaatcgatgcccgaggtttgctcttctttattgggggttttgggattccagatcaatttacaaatgcgaatatcagaaatttgtttcaggtaagtaaccttaagtggagttgtgatgcactcaaacgatcaaacgctctcttggcgaagcttccagaaataatagaggaaatggtggcaaacaaggcagtagttaaagctgttcatattgtctatagtgttggaatgcaggagatatttaaccctaggacacttttaacaacatttataagagagtgtaagaaatcatttgataacatgaatggatcacaaagtgcacatcaagggaatattgtagcaaaagggaagtacttaggtgatctgagatcgatcatcaaatgtttgaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06SLm0099A03.1" temp_strand="+" temp_description="C06SLm0099A03.1  AC226730.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0099A03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="26079" stop="27234"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26379" g_stop="26934" g_length="556"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="556" r_length="556" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0099A03.1" gen_strand="+" ref_id="SGN-U346844" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0099A03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U346844" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26379" e_stop="26934"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCTTTGGGTCGGGGAAGGAAGGCTAAAGTATTGATTTTGGAGTGCTTGTTGTTAATGATTGGAATCTACGATAAGGAAATCGAGCTTGAGAATTGGGTGAAGGAAGAGGCGGAGCATACAGCTTTAGCATGGTTGGAGAGGATGAATTCTGAAGGAGGAAAGCCTCAAGAAATCGATGCCCGAGGTTTGCTCTTCTTTATTGGGGGTTTTGGGATTCCAGATCAATTTACAAATGCGAATATCAGAAATTTGTTTCAGGTAAGTAACCTTAAGTGGAGTTGTGATGCACTCAAACGATCAAACGCTCTCTTGGCGAAGCTTCCAGAAATAATAGAGGAAATGGTGGCAAACAAGGCAGTAGTTAAAGCTGTTCATATTGTCTATAGTGTTGGAATGCAGGAGATATTTAACCCTAGGACACTTTTAACAACATTTATAAGAGAGTGTAAGAAATCATTTGATAACATGAATGGATCACAAAGTGCACATCAAGGGAATATTGTAGCAAAAGGGAAGTACTTAGGTGATCTGAGATCGATCATCAAATGTTTGAGA</genome_strand>
        <mrna_strand>ACCTTTGGGTCGGGGAAGGAAGGCTAAAGTATTGATTTTGGAGTGCTTGTTGTTAATGATTGGAATCTACGATAAGGAAATCGAGCTTGAGAATTGGGTGAAGGAAGAGGCGGAGCATACAGCTTTAGCATGGTTGGAGAGGATGAATTCTGAAGGAGGAAAGCCTCAAGAAATCGATGCCCGAGGTTTGCTCTTCTTTATTGGGGGTTTTGGGATTCCAGATCAATTTACAAATGCGAATATCAGAAATTTGTTTCAGGTAAGTAACCTTAAGTGGAGTTGTGATGCACTCAAACGATCAAACGCTCTCTTGGCGAAGCTTCCAGAAATAATAGAGGAAATGGTGGCAAACAAGGCAGTAGTTAAAGCTGTTCATATTGTCTATAGTGTTGGAATGCAGGAGATATTTAACCCTAGGACACTTTTAACAACATTTATAAGAGAGTGTAAGAAATCATTTGATAACATGAATGGATCACAAAGTGCACATCAAGGGAATATTGTAGCAAAAGGGAAGTACTTAGGTGATCTGAGATCGATCATCAAATGTTTGAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U329399" ref_strand="+" ref_description="SGN-U329399        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: AT3G52890.1 | Symbol: None | protein kinase (KIPK), identical to protein kinase KIPK (KCBP-interacting protein kinase) (Arabidopsis thaliana) gi:7716430:gb:AAF68383 | chr3:19619409-19623164 FORWARD | Aliases: F8J2.60 (evalue: 1e-54, score=211) genbank/nr: gi|32490320|emb|CAE04903.1| OSJNBa0042I15.25 [Oryza sativa (japonica cultivar-group)] (evalue: 3e-53, score=212)">
      <seq>ctcgctcttctgagatcggttctggttacttgaaagaagggtcagagcggaaattatttctggaactaccacaatcttcaactgccacttctgctaataaagtggaagcccagacagtgtctgccttagatgaagctccaacaactgtaatcccatcagacaaagagcaggcactagattctgatcttgtctcttgctcatgtacttctattactggaaataaagtcatgagacctacttctagaagtccaagtttgatgagacctgtttccagaagcagactgtttgttaagaagaatgtcattgctgctctcaccaacagttccaagcaatctaatggtggaattgacaattatttgagttgtagtaccagtgagattccttgtcagacacctgaatatgttgatcagagagaagaggataaagtaccttcagaatcatgtggtgaaaatagtgtagaagttagctcatctattctggaatcaagtgttaccaaacctggtctcagctcaagcagttgtaacagaacaagatgtatagttaaaaaaggtgatgaaagatcattatcaagagaaaaaggagagatatctcaaagttcaaagagtagcattggggattacagcagcaccacaagccttagcgaagaaagctatcgtagtgggtctagccgtagtggatatcggcctcatatgtccgtagatttgagatgggaagccattcgttgtgttcagaagcagcatggaaacattagtttgaagcaatttaagatgcttaaaaaacttggtggaggggacattgggactgtttatctgtctgagctaatgggcacaaactgtcagtttgctgtgaaagttatggacaatgactttctgatcagcaggaggaagatgacaagagcgcagactgaaaaagaaatactgcaaatactggatcatccttttctacctacactctatgctcatattaccaatgacaagtattcatgtttagtgatggaatattgtccaggaggtgatctgcatgtgctccggcaaaagcaagccaacaagaatttctctgaacaagcagtcaggttacttttattatggttacttcttccctgaaactatttcttgtttatgtctattcctaatctagattccaagagaataggcaaataaatctgcaaataaaactatgcttttctataacaggtaatatatattttgtggtcactctctttttcatgattgctctccgatttatgaagatacgcatgtcttgaagcccttacattaagactttagagataccattcttcaataagctagactcttttgcatccacaaaatgacttttacttgtcacttgctgatggataatagcttgctttatgctatcgcttgttttattcaacaaaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06SLm0099A03.1" temp_strand="+" temp_description="C06SLm0099A03.1  AC226730.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0099A03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="36836" stop="38837"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37136" g_stop="38537" g_length="1402"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1402" r_length="1402" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0099A03.1" gen_strand="+" ref_id="SGN-U329399" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1402</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0099A03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U329399" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37136" e_stop="38537"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCGCTCTTCTGAGATCGGTTCTGGTTACTTGAAAGAAGGGTCAGAGCGGAAATTATTTCTGGAACTACCACAATCTTCAACTGCCACTTCTGCTAATAAAGTGGAAGCCCAGACAGTGTCTGCCTTAGATGAAGCTCCAACAACTGTAATCCCATCAGACAAAGAGCAGGCACTAGATTCTGATCTTGTCTCTTGCTCATGTACTTCTATTACTGGAAATAAAGTCATGAGACCTACTTCTAGAAGTCCAAGTTTGATGAGACCTGTTTCCAGAAGCAGACTGTTTGTTAAGAAGAATGTCATTGCTGCTCTCACCAACAGTTCCAAGCAATCTAATGGTGGAATTGACAATTATTTGAGTTGTAGTACCAGTGAGATTCCTTGTCAGACACCTGAATATGTTGATCAGAGAGAAGAGGATAAAGTACCTTCAGAATCATGTGGTGAAAATAGTGTAGAAGTTAGCTCATCTATTCTGGAATCAAGTGTTACCAAACCTGGTCTCAGCTCAAGCAGTTGTAACAGAACAAGATGTATAGTTAAAAAAGGTGATGAAAGATCATTATCAAGAGAAAAAGGAGAGATATCTCAAAGTTCAAAGAGTAGCATTGGGGATTACAGCAGCACCACAAGCCTTAGCGAAGAAAGCTATCGTAGTGGGTCTAGCCGTAGTGGATATCGGCCTCATATGTCCGTAGATTTGAGATGGGAAGCCATTCGTTGTGTTCAGAAGCAGCATGGAAACATTAGTTTGAAGCAATTTAAGATGCTTAAAAAACTTGGTGGAGGGGACATTGGGACTGTTTATCTGTCTGAGCTAATGGGCACAAACTGTCAGTTTGCTGTGAAAGTTATGGACAATGACTTTCTGATCAGCAGGAGGAAGATGACAAGAGCGCAGACTGAAAAAGAAATACTGCAAATACTGGATCATCCTTTTCTACCTACACTCTATGCTCATATTACCAATGACAAGTATTCATGTTTAGTGATGGAATATTGTCCAGGAGGTGATCTGCATGTGCTCCGGCAAAAGCAAGCCAACAAGAATTTCTCTGAACAAGCAGTCAGGTTACTTTTATTATGGTTACTTCTTCCCTGAAACTATTTCTTGTTTATGTCTATTCCTAATCTAGATTCCAAGAGAATAGGCAAATAAATCTGCAAATAAAACTATGCTTTTCTATAACAGGTAATATATATTTTGTGGTCACTCTCTTTTTCATGATTGCTCTCCGATTTATGAAGATACGCATGTCTTGAAGCCCTTACATTAAGACTTTAGAGATACCATTCTTCAATAAGCTAGACTCTTTTGCATCCACAAAATGACTTTTACTTGTCACTTGCTGATGGATAATAGCTTGCTTTATGCTATCGCTTGTTTTATTCAACAAAATT</genome_strand>
        <mrna_strand>CTCGCTCTTCTGAGATCGGTTCTGGTTACTTGAAAGAAGGGTCAGAGCGGAAATTATTTCTGGAACTACCACAATCTTCAACTGCCACTTCTGCTAATAAAGTGGAAGCCCAGACAGTGTCTGCCTTAGATGAAGCTCCAACAACTGTAATCCCATCAGACAAAGAGCAGGCACTAGATTCTGATCTTGTCTCTTGCTCATGTACTTCTATTACTGGAAATAAAGTCATGAGACCTACTTCTAGAAGTCCAAGTTTGATGAGACCTGTTTCCAGAAGCAGACTGTTTGTTAAGAAGAATGTCATTGCTGCTCTCACCAACAGTTCCAAGCAATCTAATGGTGGAATTGACAATTATTTGAGTTGTAGTACCAGTGAGATTCCTTGTCAGACACCTGAATATGTTGATCAGAGAGAAGAGGATAAAGTACCTTCAGAATCATGTGGTGAAAATAGTGTAGAAGTTAGCTCATCTATTCTGGAATCAAGTGTTACCAAACCTGGTCTCAGCTCAAGCAGTTGTAACAGAACAAGATGTATAGTTAAAAAAGGTGATGAAAGATCATTATCAAGAGAAAAAGGAGAGATATCTCAAAGTTCAAAGAGTAGCATTGGGGATTACAGCAGCACCACAAGCCTTAGCGAAGAAAGCTATCGTAGTGGGTCTAGCCGTAGTGGATATCGGCCTCATATGTCCGTAGATTTGAGATGGGAAGCCATTCGTTGTGTTCAGAAGCAGCATGGAAACATTAGTTTGAAGCAATTTAAGATGCTTAAAAAACTTGGTGGAGGGGACATTGGGACTGTTTATCTGTCTGAGCTAATGGGCACAAACTGTCAGTTTGCTGTGAAAGTTATGGACAATGACTTTCTGATCAGCAGGAGGAAGATGACAAGAGCGCAGACTGAAAAAGAAATACTGCAAATACTGGATCATCCTTTTCTACCTACACTCTATGCTCATATTACCAATGACAAGTATTCATGTTTAGTGATGGAATATTGTCCAGGAGGTGATCTGCATGTGCTCCGGCAAAAGCAAGCCAACAAGAATTTCTCTGAACAAGCAGTCAGGTTACTTTTATTATGGTTACTTCTTCCCTGAAACTATTTCTTGTTTATGTCTATTCCTAATCTAGATTCCAAGAGAATAGGCAAATAAATCTGCAAATAAAACTATGCTTTTCTATAACAGGTAATATATATTTTGTGGTCACTCTCTTTTTCATGATTGCTCTCCGATTTATGAAGATACGCATGTCTTGAAGCCCTTACATTAAGACTTTAGAGATACCATTCTTCAATAAGCTAGACTCTTTTGCATCCACAAAATGACTTTTACTTGTCACTTGCTGATGGATAATAGCTTGCTTTATGCTATCGCTTGTTTTATTCAACAAAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U332295" ref_strand="+" ref_description="SGN-U332295        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: AT5G47750.1 | Symbol: None | protein kinase, putative, similar to protein kinase G11A (Oryza sativa) SWISS-PROT:P47997 | chr5:19356929-19359582 REVERSE | Aliases: MCA23.7, MCA23_7 (evalue: 1e-106, score=382) genbank/nr: gi|45935152|gb|AAS79610.1| putative protein kinase [Ipomoea trifida] (evalue: 4e-133, score=476)">
      <seq>ccggcaaaagcaagccattaagaatttctctgaacaagcagtcagattttatgtagcggaagttcttcttgctttggaataccttcacatgcttggagtcatctaccgagacttaaaaccagagaatgtcttggttcgagaagatggtcacatcatgctgtccgattttgatctgtctcttagatgtgttgttaatcccatgttggtgaaatcatgttcgcctgtgattaagcctccaaagacgtctagtccatgctcggaatctagctgcatagatcccttttgcctacatccatcctggcaagtatcctgcttcacccctagatttttatctgcaacatcaaagacacgtaagctaaaggctgacatcgctgcacaagtcacacctttgccacagctcgtagtggagccaactaatgcccgatccaactcgtttgttggcacccatgaatacctggctccagagattatcaaaggagaaggtcatggcagtgcagtagattggtggacctttggtatctttctatatgaactgttatatggaaggacaccttttaaaggaccaggaaatgaggatacattagcaaatgtggtttctcagtgtctcaagttcccttcatatcctgtggttagctctagtgcgagagatctgatcagacggttattacaaaaggaaccagagaataggttgggagctgagaaaggagctgcagagataaagcagcatcctttcttcgagggactgaactgggcgttaatacgatgtgaaacacctccagaactgcctagattctgtgaattgggaaatgtaatccctgataccaaccaacagaacaaggagattgccaagtctcacaaagagttcaaagtatagaagaggacattgcgtttgagatgttttaactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06SLm0099A03.1" temp_strand="+" temp_description="C06SLm0099A03.1  AC226730.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0099A03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="37863" stop="40561"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38163" g_stop="38207" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="0.956"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38208" i_stop="39399" i_length="1192">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39400" g_stop="40261" g_length="862"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="906" r_length="861" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0099A03.1" gen_strand="+" ref_id="SGN-U332295" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>907</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0099A03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U332295" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38163" e_stop="38207"/>
          <exon e_start="39400" e_stop="40261"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGGCAAAAGCAAGCCAACAAGAATTTCTCTGAACAAGCAGTCAGGTTACTTTTATTATGGTTACTTCTTCCCTGAAACTATTTCTTGTTTATGTCTATTCCTAATCTAGATTCCAAGAGAATAGGCAAATAAATCTGCAAATAAAACTATGCTTTTCTATAACAGGTAATATATATTTTGTGGTCACTCTCTTTTTCATGATTGCTCTCCGATTTATGAAGATACGCATGTCTTGAAGCCCTTACATTAAGACTTTAGAGATACCATTCTTCAATAAGCTAGACTCTTTTGCATCCACAAAATGACTTTTACTTGTCACTTGCTGATGGATAATAGCTTGCTTTATGCTATCGCTTGTTTTATTCAACAAAATTAGCATTCAATTTGACTGAATCAGGGGAGGTCAATCAAACTAATAGGGAAATCTTTTACTCTGCTAAGCTTGAGGGGTTCCCCTGTAATTTTTGGAAAGTTCAGGGGTCTGGTTATGTCAAATAAGCTTCCGATTTCCTTTAATTTCTTCTTTTTGGTCAATCCATTTTCCAACCCTCATGAAGGATTGTTATGTCTCAGTGATTAGAACTCCTTGAATCTTTGTTATATATGTTTCTCTTGATTGAACTTTGAAGAGTGTCCCATAATCTAGTGGATGCAAAATATTGAACGCAGCTAAAGTCAAAATCATTAGCAACTAGTTATATGAACAGAGATAAAATCAATTCAATGGAAACATGGGAAGTGGGTGGAAAGGGTGAATCAAAGAAAAGAAGTGGAGAAGTAAAAAATGTAGTGAAAATATGTGAACAATGAAAGTGACTTGTCACTGGACTTGCATATCTTCTCCATGGCAAATGGCATCGGCTTGATTCATCGCACATCCAGTAGTGAATTCCCACTCTGTATGGAGACTTTATCAAGTAAATTTTTGGTGAAATGAGTTGTGAATACGCAACCTGTCTTTCCAGTCATTCTCTTACTTAAGAGTATAGTATCTGAGGTGACACCTAATATGTCGAGCCTACTCTTTCAAATTTTACTGAATAACTTTCCCAAATACTCATGTTTAAGTAAATATCTTGTGCTTTATAAGTAACTTTGTTGGACAAGTCTTCCCTTATGATTTTCAGTAATCTGGTGATGGGAGTGCAGTTTGTCATTTTAATCTCATGAGACACAGTTTCTGTGGTTTGCTATGTGATCTTGACATTATATCTGTTGTTCTTATTCTTTACACAGATTTTATGTAGCGGAAGTTCTTCTTGCTTTGGAATACCTTCACATGCTTGGAGTCATCTACCGAGACTTAAAACCAGAGAATGTCTTGGTTCGAGAAGATGGTCACATCATGCTGTCCGATTTTGATCTGTCTCTTAGATGTGTTGTTAATCCCATGTTGGTGAAATCATGTTCGCCTGTGATTAAGCCTCCAAAGACGTCTAGTCCATGCTCGGAATCTAGCTGCATAGATCCCTTTTGCCTACATCCATCCTGGCAAGTATCCTGCTTCACCCCTAGATTTTTATCTGCAACATCAAAGACACGTAAGCTAAAGGCTGACATCGCTGCACAAGTCACACCTTTGCCACAGCTCGTAGTGGAGCCAACTAATGCCCGATCCAACTCGTTTGTTGGCACCCATGAATACCTGGCTCCAGAGATTATCAAAGGAGAAGGTCATGGCAGTGCAGTAGATTGGTGGACCTTTGGTATCTTTCTATATGAACTGTTATATGGAAGGACACCTTTTAAAGGACCAGGAAATGAGGATACATTAGCAAATGTGGTTTCTCAGTGTCTCAAGTTCCCTTCATATCCTGTGGTTAGCTCTAGTGCGAGAGATCTGATCAGACGGTTATTACAAAAGGAACCAGAGAATAGGTTGGGAGCTGAGAAAGGAGCTGCAGAGATAAAGCAGCATCCTTTCTTCGAGGGACTGAACTGGGCGTTAATACGATGTGAAACACCTCCAGAACTGCCTAGATTCTGTGAATTGGGAAATGTAATCCCTGATACCAACCAACAGAACAAGGAGATTGCCAAGTCTCACAAAGAGTTCAAAAGTATAGAAGAGGACATTGCGTTTGAGATGTTTTAACTT</genome_strand>
        <mrna_strand>CCGGCAAAAGCAAGCCATTAAGAATTTCTCTGAACAAGCAGTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTATGTAGCGGAAGTTCTTCTTGCTTTGGAATACCTTCACATGCTTGGAGTCATCTACCGAGACTTAAAACCAGAGAATGTCTTGGTTCGAGAAGATGGTCACATCATGCTGTCCGATTTTGATCTGTCTCTTAGATGTGTTGTTAATCCCATGTTGGTGAAATCATGTTCGCCTGTGATTAAGCCTCCAAAGACGTCTAGTCCATGCTCGGAATCTAGCTGCATAGATCCCTTTTGCCTACATCCATCCTGGCAAGTATCCTGCTTCACCCCTAGATTTTTATCTGCAACATCAAAGACACGTAAGCTAAAGGCTGACATCGCTGCACAAGTCACACCTTTGCCACAGCTCGTAGTGGAGCCAACTAATGCCCGATCCAACTCGTTTGTTGGCACCCATGAATACCTGGCTCCAGAGATTATCAAAGGAGAAGGTCATGGCAGTGCAGTAGATTGGTGGACCTTTGGTATCTTTCTATATGAACTGTTATATGGAAGGACACCTTTTAAAGGACCAGGAAATGAGGATACATTAGCAAATGTGGTTTCTCAGTGTCTCAAGTTCCCTTCATATCCTGTGGTTAGCTCTAGTGCGAGAGATCTGATCAGACGGTTATTACAAAAGGAACCAGAGAATAGGTTGGGAGCTGAGAAAGGAGCTGCAGAGATAAAGCAGCATCCTTTCTTCGAGGGACTGAACTGGGCGTTAATACGATGTGAAACACCTCCAGAACTGCCTAGATTCTGTGAATTGGGAAATGTAATCCCTGATACCAACCAACAGAACAAGGAGATTGCCAAGTCTCACAAAGAGTTC-AAAGTATAGAAGAGGACATTGCGTTTGAGATGTTTTAACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U314043" ref_strand="+" ref_description="SGN-U314043        Tomato 200607 #1 [38 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr4:11265662-11266982 FORWARD | Aliases: None(evalue: 3e-18, score=89) genbank/nr: hypothetical(evalue: 7e-19, score=97.4)">
      <seq>agtcatatgcatttcatgcactttcaaatattcttttatgctgatggactcctctttttatatacctggtcctggactacaaattcaattgcacctcttttctagaataaatcattttatgcaaagcttgttttagttatttaagcatccatgaaagattcacttctctcgtagtgtgccacaaatatgttagaaaaagaagggaatgttgcggatattaaccatcctaacgtggtgcaggttaaactgattggttatattcattttattatcgacgactccctgctcatcgtcttcagctttctctccgtcgcttgccaagatgtcagaagaagcacctttctatcccagagaaaagcttgttgagaagcaaaagttttaccaaagcgtccacaagcacacatacttgaaaggtcgttttgacaaggtcacctcagtggccattccagctgctttggctgcttctgctttgtttatgattgggagagggatctacaacatgtctcatggcatagggaagaaggaataaatagcggctactgctcgactattgttcctatggtggctgaatttgaaacgacctgtttgttcttttgttgattttcaattatcagtagctaatactagtcacttggatgctgatattaaaacatgccgatttatggcatatgctatcagtactccgcagcataataacacattatctcctctgtttaggggttctgcatatttgtattaaacggtgtttgtgtggaaataagcatgtcattttctggctctccttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06SLm0099A03.1" temp_strand="-" temp_description="C06SLm0099A03.1  AC226730.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0099A03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="41795" stop="40342"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41495" g_stop="41029" g_length="467"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="481" r_length="481" r_score="0.910"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41028" i_stop="40947" i_length="82">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40946" g_stop="40642" g_length="305"/>
          <reference_exon_boundary r_type="cDNA" r_start="482" r_stop="786" r_length="305" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="801" polyA_stop="851"/>
      <MATCH_line gen_id="C06SLm0099A03.1" gen_strand="-" ref_id="SGN-U314043" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>772</cumulative_length_of_scored_exons>
        <coverage percentage="0.907" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0099A03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U314043" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41495" e_stop="41029"/>
          <exon e_start="40946" e_stop="40642"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTCATATGCATTTCATGCACTTTCAAATATTCTTTTATGCTGATGGACTCCTCTTTTTATATACCTGGTCCTGGACTACAAATTCAATTGCACCTCTTTTCTAGAATAAATCATTTTATGCAAAGCTTGTTTTAGTTATTTAAGCATCCATGAAAGATTCACTTCTCTCGTAGTGTGCCACAAATATGTTAGAAAAAGAAGGGAATGTTGCGGATATTAACCATCCTAACGTGGTGCAGGTTAAACTGATTGGTTATATTCATTTTATTA-CGA-GA-T---TG-T-A-AATTTACA-AGTTAT-TGAATAAC---ACAGGATGTCAGAAGAAGCACCTTTCTATCCCAGAGAAAAGCTTGTTGAGAAGCAAAAGTTTTACCAAAGCGTCCACAAGCACACATACTTGAAAGGTCGTTTTGACAAGGTCACCTCAGTGGCCATTCCAGCTGCTTTGGCTGCTTCTGCTTTGTTTATGATTGTGAGTTTCTTCGAATTTTTTCTAGATTGCTTTATCTGATGTCCCGAATCAACTCTAATGGTATTTTTGGATTATATTTCAGGGGAGAGGGATCTACAACATGTCTCATGGCATAGGGAAGAAGGAATAAATAGCGGCTACTGCTCGACTATTGTTCCTATGGTGGCTGAATTTGAAACGACCTGTTTGTTCTTTTGTTGATTTTCAATTATCAGTAGCTAATACTAGTCACTTGGATGCTGATATTAAAACATGCCGATTTATGGCATATGCTATCAGTACTCCGCAGCATAATAACACATTATCTCCTCTGTTTAGGGGTTCTGCATATTTGTATTAAACGGTGTTTGTGTGGAAATAAGCATGTCATTTTCTGGCTCTCCTTAA</genome_strand>
        <mrna_strand>AGTCATATGCATTTCATGCACTTTCAAATATTCTTTTATGCTGATGGACTCCTCTTTTTATATACCTGGTCCTGGACTACAAATTCAATTGCACCTCTTTTCTAGAATAAATCATTTTATGCAAAGCTTGTTTTAGTTATTTAAGCATCCATGAAAGATTCACTTCTCTCGTAGTGTGCCACAAATATGTTAGAAAAAGAAGGGAATGTTGCGGATATTAACCATCCTAACGTGGTGCAGGTTAAACTGATTGGTTATATTCATTTTATTATCGACGACTCCCTGCTCATCGTCTTCAGCTTTCTCTCCGTCGCTTGCCAAGATGTCAGAAGAAGCACCTTTCTATCCCAGAGAAAAGCTTGTTGAGAAGCAAAAGTTTTACCAAAGCGTCCACAAGCACACATACTTGAAAGGTCGTTTTGACAAGGTCACCTCAGTGGCCATTCCAGCTGCTTTGGCTGCTTCTGCTTTGTTTATGATT..................................................................................GGGAGAGGGATCTACAACATGTCTCATGGCATAGGGAAGAAGGAATAAATAGCGGCTACTGCTCGACTATTGTTCCTATGGTGGCTGAATTTGAAACGACCTGTTTGTTCTTTTGTTGATTTTCAATTATCAGTAGCTAATACTAGTCACTTGGATGCTGATATTAAAACATGCCGATTTATGGCATATGCTATCAGTACTCCGCAGCATAATAACACATTATCTCCTCTGTTTAGGGGTTCTGCATATTTGTATTAAACGGTGTTTGTGTGGAAATAAGCATGTCATTTTCTGGCTCTCCTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U332226" ref_strand="+" ref_description="SGN-U332226        Tomato 200607 #1 [2 ESTs aligned]">
      <seq>gaagataataatgacatgggttgactcagttagcgagatggctcaattctgtagttcgagtcatattgggggtaattaagaaccgcagtcgatccataacagtgcgttagaaatatgattattaggtttctcttttagattttgtggtttctcgtgttattatctataggagcatcgagctgtaagactagctcaattcattttattaacatgaagatgaatcataaggttgctcaggttaattattcttagggaataattgaacaataatacagtctggtgaaagggttatgtcttcgctgttaagtcaagccatgcttattgctcatttggtgcaaaaatcacttaaatcacggagctaattggctaattcattaagacatggttgtggttggacttcacatatctgtaaccatataacctttgatgttaatatgggttacattaccatcctgtttttttacccctgatttaactatgccaccaacatatgtgatcagagcatttgtgtcttttcttcttaattctcttaatcaggggaagtgatattatacttgttcaatgaaaatttgaaggtgcaagtcatggctgtcatatgatcagtgtgttgctgtttctttttgaatagttaaatcttagagtcttgttttcctttacactagatccattgaactttgatctactaaaaaccatctctcatctcagccttacagctcgacacagcatctantatctcttttcattcntnnctcagagttacagtcaccattagaacataccaatatttcatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06SLm0099A03.1" temp_strand="-" temp_description="C06SLm0099A03.1  AC226730.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0099A03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="42948" stop="41557"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42648" g_stop="41857" g_length="792"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="793" r_length="793" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0099A03.1" gen_strand="-" ref_id="SGN-U332226" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>792</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0099A03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U332226" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42648" e_stop="41857"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGATAATAATGACATGGGTTGACTCAGTTAGCGAGATGGCTCAATTCTGTAGTTCGAGTCATATTGGGGGTAATTAAGAACCGCAGTCGATCCATAACAGTGCGTTAGAAATATGATTATTAGGTTTCTCTTTTAGATTTTGTGGTTTCTCGTGTTATTATCTATAGGAGCATCGAGCTGTAAGACTAGCTCAATTCATTTTATTAACATGAAGATGAATCATAAGGTTGCTCAGGTTAATTATTCTTAGGGAATAATTGAACAATAATACAGTCTGGTGAAAGGGTTATGTCTTCGCTGTTAAGTCAAGCCATGCTTATTGCTCATTTGGTGCAAAAATCACTTAAATCACGGAGCTAATTGGCTAATTCATTAAGACATGGTTGTGGTTGGACTTCACATATCTGTAACCATATAACCTTTGATGTTAATATGGGTTACATTACCATCCTGTTTTTTTACCCCTGATTTAACTATGCCACCAACATATGTGATCAGAGCATTTGTGTCTTTTCTTCTTAATTCTCTTAATCAGGGGAAGTGATATTATACTTGTTCAATGAAAATTTGAAGGTGCAAGTCATGGCTGTCATATGATCAGTGTGTTGCTGTTTCTTTTTGAATAGTTAAATCTTAGAGTCTTGTTTTCCTTTACACTAGATCCATTGAACTTGATTCTACTAAAAACCATCTCTCATCTCAGCCTTACAGCTCGACACAGCATCTATAATCTCTTTTCATTCTTCTTCAAGAGTTACAGTCACCATTAGAACATACCAATA-TTCATTTG</genome_strand>
        <mrna_strand>GAAGATAATAATGACATGGGTTGACTCAGTTAGCGAGATGGCTCAATTCTGTAGTTCGAGTCATATTGGGGGTAATTAAGAACCGCAGTCGATCCATAACAGTGCGTTAGAAATATGATTATTAGGTTTCTCTTTTAGATTTTGTGGTTTCTCGTGTTATTATCTATAGGAGCATCGAGCTGTAAGACTAGCTCAATTCATTTTATTAACATGAAGATGAATCATAAGGTTGCTCAGGTTAATTATTCTTAGGGAATAATTGAACAATAATACAGTCTGGTGAAAGGGTTATGTCTTCGCTGTTAAGTCAAGCCATGCTTATTGCTCATTTGGTGCAAAAATCACTTAAATCACGGAGCTAATTGGCTAATTCATTAAGACATGGTTGTGGTTGGACTTCACATATCTGTAACCATATAACCTTTGATGTTAATATGGGTTACATTACCATCCTGTTTTTTTACCCCTGATTTAACTATGCCACCAACATATGTGATCAGAGCATTTGTGTCTTTTCTTCTTAATTCTCTTAATCAGGGGAAGTGATATTATACTTGTTCAATGAAAATTTGAAGGTGCAAGTCATGGCTGTCATATGATCAGTGTGTTGCTGTTTCTTTTTGAATAGTTAAATCTTAGAGTCTTGTTTTCCTTTACACTAGATCCATTGAACTTTGATCTACTAAAAACCATCTCTCATCTCAGCCTTACAGCTCGACACAGCATCTANTATCTCTTTTCATTCNTNNCTCAGAGTTACAGTCACCATTAGAACATACCAATATTTCATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U347083" ref_strand="+" ref_description="SGN-U347083        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr2:11839886-11841446 REVERSE | Aliases: F15K20.13, F15K20_13(evalue: 1e-32, score=137) genbank/nr: gi|15226242|ref|NP_180345.1| expressed protein [Arabidopsis thaliana] gi|25407920|pir||G84676 hypothetical protein At2g27770 [imported] - Arabidopsis thaliana gi|3860255|gb|AAC73023.1| hypothetical protein [Arabidopsis thaliana] gi|26449502|dbj|BAC41877.1| unknown protein [Arabidopsis thaliana] gi|28950899|gb|AAO63373.1| At2g27770 [Arabidopsis thaliana](evalue: 1e-30, score=137)">
      <seq>tttccccttcagatcccttttcttcttcttgtaaccaaaaaaagaaaatgagagattttgcttcttgtttcaatgaatatgctgttcaagtttctgataatacttcttgttctagttacctcaaactctgcttgtatccctccttctataattccttcagtacaaaacactgtgaattgtttgtaccaaagtcaatttatccaataaaaaacatgtcttgatcacaatttcatggtgcaaaacaaatgtaacacaaggcttgagtgtaccacctttggtgatgatcatccaaatgtattcaaactcaacacgaatacccgtctttttaggaagaagaaggggagtaaatcaatggatttggatcattttaaggttgaaatcatttgggatttgtgtggagctaggtacttaagtagtggtcctgaaccaattgatggatattatgtactgatcatagttgattcacaacttggagttattcttggtgatatggctgaagaagcatcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06SLm0099A03.1" temp_strand="-" temp_description="C06SLm0099A03.1  AC226730.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0099A03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="48286" stop="47183"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47986" g_stop="47483" g_length="504"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="508" r_length="508" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0099A03.1" gen_strand="-" ref_id="SGN-U347083" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>504</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0099A03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U347083" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47986" e_stop="47483"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCCCCTTCAGATCCCTTTTCTTCTTCTTGTAACCAAAAAAAGAAAATGAGAGATTTTGCTTCTTGTTTCAATGAATATGCTGTTCAAGTTTCTGATAATACTTCTTGTTCTAGTTA-CTCAAACTCTGCTTGTATCCCTCCTTCTATAATTCCTTCAGTACAAAACACTGTGAATTGTTTGTA-CAAAGTCAATTTATCCAATAAAAAACATGTCTTGATCACAATTTCATGGTGCAAAACAAATGTAACACAAGGCTTGAGTGTA-CA-CTTTGGTGATGATCATCCAAATGTATTCAAACTCAACACGAATACGCGTCTTTTTAGGAAGAAGAAGGGGAGTAAATCAATGGATTTGGATCATTTTAAGGTTGAAATCATTTGGGATTTGTGTGGAGCTAGGTACTTAAGTAGTGGTCCTGAACCAATTGATGGATATTATGTACTGATCATAGTTGATTCACAACTTGGAGTTATTCTTGGTGATATGGCTGAAGAAGCATCAT</genome_strand>
        <mrna_strand>TTTCCCCTTCAGATCCCTTTTCTTCTTCTTGTAACCAAAAAAAGAAAATGAGAGATTTTGCTTCTTGTTTCAATGAATATGCTGTTCAAGTTTCTGATAATACTTCTTGTTCTAGTTACCTCAAACTCTGCTTGTATCCCTCCTTCTATAATTCCTTCAGTACAAAACACTGTGAATTGTTTGTACCAAAGTCAATTTATCCAATAAAAAACATGTCTTGATCACAATTTCATGGTGCAAAACAAATGTAACACAAGGCTTGAGTGTACCACCTTTGGTGATGATCATCCAAATGTATTCAAACTCAACACGAATACCCGTCTTTTTAGGAAGAAGAAGGGGAGTAAATCAATGGATTTGGATCATTTTAAGGTTGAAATCATTTGGGATTTGTGTGGAGCTAGGTACTTAAGTAGTGGTCCTGAACCAATTGATGGATATTATGTACTGATCATAGTTGATTCACAACTTGGAGTTATTCTTGGTGATATGGCTGAAGAAGCATCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U324828" ref_strand="+" ref_description="SGN-U324828        Tomato 200607 #1 [5 ESTs aligned] arabidopsis/peptide: | Symbol: None | glycosyl transferase family 2 protein, similar to beta-(1-3)-glucosyl transferase GB:AAC62210 GI:3687658 from (Bradyrhizobium japonicum), cellulose synthase from Agrobacterium tumeficiens (gi:710492) and Agrobacterium radiobacter (gi:710493); contains Pfam glycosyl transferase, group 2 family protein domain PF00535 | chr5:985698-990546 REVERSE | Aliases: F17C15.180, F17C15_180(evalue: 7e-31, score=130) genbank/nr: gi|45935120|gb|AAS79578.1| putative glycosyltransferase [Ipomoea trifida] >gi|34148021|gb|AAQ62570.1| glycosyltransferase 1 [Ipomoea trifida] (evalue: 2e-36, score=155)">
      <seq>ctggattctcttcgagaatgtgatggctttccaacgaaccaaggctacatttatcggcttgctagaagcaaaaagagctaatgaatgggttgtcacggagaaactaggtgatgctctcaagaacaaagaaaaaacaaaacaaaccaaaaaaccccgaggatctctatttggagacaggattcttccacaagaattgggattcgcagttttccttttcttttgtggatgctatgatgtcctctatgggaaaagccagtactttctttacatcttcctccaagtcatcactttcacaattgctggatttggctacattggcaccatcgtcccctcgtaatagcagaaacttcaaaaaaaaaaaaatcgtcctgtattgactcgtgtacactaaaataaatttttgagtgctttcgtgcaaccattttcaaaggatgccaaactcaaaatctccggataattttcttagagatactgtgttggtaaggaggagcgaagagcaaagagatatctatattaagcccagaacacagaagaagacgataaaacagatgaattagtgtagatagattgtatttttcttctattgaagctctttagttgtgtgacattgtaattctatagcttgcaagtcatttttctttctgttcttgttctctttgtctctgtctttcaagagggacaaaagctcaggatattgcgaaaaggacaaaacttataatcaaatttttgtcattctagcttcaaaaaaaaaaaaaaaaaaactcgaggggggcccgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0099A03-xXFnz/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06SLm0099A03.1" temp_strand="-" temp_description="C06SLm0099A03.1  AC226730.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0099A03 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="51838" stop="50382"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51538" g_stop="51362" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51361" i_stop="51249" i_length="113">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.819" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51248" g_stop="50683" g_length="566"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="743" r_length="566" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="744" polyA_stop="762"/>
      <MATCH_line gen_id="C06SLm0099A03.1" gen_strand="-" ref_id="SGN-U324828" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>743</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0099A03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U324828" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51538" e_stop="51362"/>
          <exon e_start="51248" e_stop="50683"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGATTCTCTTCGAGAATGTGATGGCTTTCCAACGAACCAAGGCTACATTTATCGGCTTGCTAGAAGCAAAAAGAGCTAATGAATGGGTTGTCACGGAGAAACTAGGTGATGCTCTCAAGAACAAAGAAAAAACAAAACAAACCAAAAAACCCCGAGGATCTCTATTTGGAGACAGGTGAGAAACTCTCCTGAATGAAGCTTTTGTTTTCATGTTCTTGATATCATTGAACTATTAGAATATTGCATCAGTTTGTTAACCATGCATTATCGGTTGGTCTAATCATACAGGATTCTTCCACAAGAATTGGGATTCGCAGTTTTCCTTTTCTTTTGTGGATGCTATGATGTCCTCTATGGGAAAAGCCAGTACTTTCTTTACATCTTCCTCCAAGTCATCACTTTCACAATTGCTGGATTTGGCTACATTGGCACCATCGTCCCCTCGTAATAGCAGAAACTTCAAAAAAAAAAAAATCGTCCTGTATTGACTCGTGTACACTAAAATAAATTTTTGAGTGCTTTCGTGCAACCATTTTCAAAGGATGCCAAACTCAAAATCTCCGGATAATTTTCTTAGAGATACTGTGTTGGTAAGGAGGAGCGAAGAGCAAAGAGATATCTATATTAAGCCCAGAACACAGAAGAAGACGATAAAACAGATGAATTAGTGTAGATAGATTGTATTTTTCTTCTATTGAAGCTCTTTAGTTGTGTGACATTGTAATTCTATAGCTTGCAAGTCATTTTTCTTTCTGTTCTTGTTCTCTTTGTCTCTGTCTTTCAAGAGGGACAAAAGCTCAGGATATTGCGAAAAGGACAAAACTTATAATCAAATTTTTGTCATTCTAGCTTCA</genome_strand>
        <mrna_strand>CTGGATTCTCTTCGAGAATGTGATGGCTTTCCAACGAACCAAGGCTACATTTATCGGCTTGCTAGAAGCAAAAAGAGCTAATGAATGGGTTGTCACGGAGAAACTAGGTGATGCTCTCAAGAACAAAGAAAAAACAAAACAAACCAAAAAACCCCGAGGATCTCTATTTGGAGACAG.................................................................................................................GATTCTTCCACAAGAATTGGGATTCGCAGTTTTCCTTTTCTTTTGTGGATGCTATGATGTCCTCTATGGGAAAAGCCAGTACTTTCTTTACATCTTCCTCCAAGTCATCACTTTCACAATTGCTGGATTTGGCTACATTGGCACCATCGTCCCCTCGTAATAGCAGAAACTTCAAAAAAAAAAAAATCGTCCTGTATTGACTCGTGTACACTAAAATAAATTTTTGAGTGCTTTCGTGCAACCATTTTCAAAGGATGCCAAACTCAAAATCTCCGGATAATTTTCTTAGAGATACTGTGTTGGTAAGGAGGAGCGAAGAGCAAAGAGATATCTATATTAAGCCCAGAACACAGAAGAAGACGATAAAACAGATGAATTAGTGTAGATAGATTGTATTTTTCTTCTATTGAAGCTCTTTAGTTGTGTGACATTGTAATTCTATAGCTTGCAAGTCATTTTTCTTTCTGTTCTTGTTCTCTTTGTCTCTGTCTTTCAAGAGGGACAAAAGCTCAGGATATTGCGAAAAGGACAAAACTTATAATCAAATTTTTGTCATTCTAGCTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>12</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="5998" PGL_stop="7565"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="5998" e_stop="7565"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="5998" e_stop="7565" e_length="1568"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5998" stop="6551"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U339935" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6549" stop="7565"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U324087" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAGTGTGAGATTTGCAAAAGCTATTTGAACTCTACATGGTCTTTAGAGTTCAAAAATCTTTGCGATTGGTACTCTTATCTACTCAAAAAATCACCCACTGGTACAATACATGTACACGTTCTTGGAAATGTCATTACATCAAATCCAAACAACGTTGAATACATGCTTAAAACAAATTTCGATAATTTTCCTAAAGGAAAACAGTTTTCTACTATCCTCGGCGATTTATTAGGCCGAGGAATTTTCGCCGTAGACGGCGAAATGTGGAAGTTTCAACGGAAGATGGCAAGTTTAGAACTCGGACGCGTATCGATACGCTCGTACGCTTTCGATATCGTCAGTGACGAAATTAGAAACCGGTTGATTCCGCTTTTGGAAAGTAATATCCATACTGTTTTGGACTTACAAGATGTTTTACGACGTTTTTCGTTCGATAGCATCTGTAAATTTTCATTTGGTATGGATCCTGGTTGTTTGAAATTATCATTACCAGATTCAGATCTTCAAGAGTCATTTGATTTAGCTTCGAAATTGTCTGCTGAAAGAGCTATGACGGTTTCACCTTTAGTGTGGAAAATTAAAAGGAGTTTGAATATTGGATCAGAAAAGAAGCTAAAAGAAGCGATCGAAAAAGTTGATGTACTTGCTGAGGAGGTAATAATTCAGAAAAGAAAAAACGATTTTTCTTCCCAAAATGACGTTTTGTCTAGGTTCATGAGGAATATTGATGATGATAAACTCCTTAGGGACATTATCGTCAGTTTTCTATTGGCGGGTAGAGACACTGTTGCGTCCGGACTGACTACTTTTTTTTGGCTACTAGCTCAACATCCACATGTTATTAATGAAATTCGAGCTGAGTCGAATCGAGTAATGGGAAAAACAGTAAATGGAACTCTAGCTACTTTCGAAGGAATTCGGGAAATGCATTTTTTGACTGCAGCTATACATGAGAGTATTAGGCTATTTCCGCCTGTTCAATTTGATTCCAAGTTTTGTCAAGAAGACGATACGCTCCCTGATGGTACGTTCGTGGCTAAAGGGACGAGGGTGACGTATCATCCATATGCAATGGGGAGGATGGAGGGTATTTGGGGTAAAGATTGTTTAGAATTCAAGCCAGAAAGATGGTTGGAAGACGGGGTTTTTAAGGCACAGTGTCCTTTTAAATATCCCGTTTTTCAAGGTGGTGTTAGGGTTTGTTTGGGTAAAGATTTATCTATTGTGGAAATGAAGAGTGTTGCTTTGGCTTTGATTAGGCAATTCGACTTTCAAGTTCATTTGGCTAAAGACCAGGCACCTAAGTTCATGCCGGGATTGACAGCCACCGTGAGAGGCGGACTTCCCATCATGGTTCAAAAAAGACGAGAACAATAGACACTGACACGAATTCAAGATTTAGAGTCAGTATTGTACAACTTTTGTAATTAATTATTAGTTTATACTTCTATCTTTTAGCTAGCGTTTTAGGCTTAGAGCAAGCTGAACTATGTGTATATAGACGACTAACGTCAAAAAAGCTTATGACTTATGATGATATAATAACAAAATTGTTCAAAAAAATATTG</gDNA_template>
            <first_frame> E  C  E  I  C  K  S  Y  L  N  S  T  W  S  L  E  F  K  N  L  C  D  W  Y  S  Y  L  L  K  K  S  P  T  G  T  I  H  V  H  V  L  G  N  V  I  T  S  N  P  N  N  V  E  Y  M  L  K  T  N  F  D  N  F  P  K  G  K  Q  F  S  T  I  L  G  D  L  L  G  R  G  I  F  A  V  D  G  E  M  W  K  F  Q  R  K  M  A  S  L  E  L  G  R  V  S  I  R  S  Y  A  F  D  I  V  S  D  E  I  R  N  R  L  I  P  L  L  E  S  N  I  H  T  V  L  D  L  Q  D  V  L  R  R  F  S  F  D  S  I  C  K  F  S  F  G  M  D  P  G  C  L  K  L  S  L  P  D  S  D  L  Q  E  S  F  D  L  A  S  K  L  S  A  E  R  A  M  T  V  S  P  L  V  W  K  I  K  R  S  L  N  I  G  S  E  K  K  L  K  E  A  I  E  K  V  D  V  L  A  E  E  V  I  I  Q  K  R  K  N  D  F  S  S  Q  N  D  V  L  S  R  F  M  R  N  I  D  D  D  K  L  L  R  D  I  I  V  S  F  L  L  A  G  R  D  T  V  A  S  G  L  T  T  F  F  W  L  L  A  Q  H  P  H  V  I  N  E  I  R  A  E  S  N  R  V  M  G  K  T  V  N  G  T  L  A  T  F  E  G  I  R  E  M  H  F  L  T  A  A  I  H  E  S  I  R  L  F  P  P  V  Q  F  D  S  K  F  C  Q  E  D  D  T  L  P  D  G  T  F  V  A  K  G  T  R  V  T  Y  H  P  Y  A  M  G  R  M  E  G  I  W  G  K  D  C  L  E  F  K  P  E  R  W  L  E  D  G  V  F  K  A  Q  C  P  F  K  Y  P  V  F  Q  G  G  V  R  V  C  L  G  K  D  L  S  I  V  E  M  K  S  V  A  L  A  L  I  R  Q  F  D  F  Q  V  H  L  A  K  D  Q  A  P  K  F  M  P  G  L  T  A  T  V  R  G  G  L  P  I  M  V  Q  K  R  R  E  Q  *  T  L  T  R  I  Q  D  L  E  S  V  L  Y  N  F  C  N  *  L  L  V  Y  T  S  I  F  *  L  A  F  *  A  *  S  K  L  N  Y  V  Y  I  D  D  *  R  Q  K  S  L  *  L  M  M  I  *  *  Q  N  C  S  K  K  Y   </first_frame>
            <second_frame>  S  V  R  F  A  K  A  I  *  T  L  H  G  L  *  S  S  K  I  F  A  I  G  T  L  I  Y  S  K  N  H  P  L  V  Q  Y  M  Y  T  F  L  E  M  S  L  H  Q  I  Q  T  T  L  N  T  C  L  K  Q  I  S  I  I  F  L  K  E  N  S  F  L  L  S  S  A  I  Y  *  A  E  E  F  S  P  *  T  A  K  C  G  S  F  N  G  R  W  Q  V  *  N  S  D  A  Y  R  Y  A  R  T  L  S  I  S  S  V  T  K  L  E  T  G  *  F  R  F  W  K  V  I  S  I  L  F  W  T  Y  K  M  F  Y  D  V  F  R  S  I  A  S  V  N  F  H  L  V  W  I  L  V  V  *  N  Y  H  Y  Q  I  Q  I  F  K  S  H  L  I  *  L  R  N  C  L  L  K  E  L  *  R  F  H  L  *  C  G  K  L  K  G  V  *  I  L  D  Q  K  R  S  *  K  K  R  S  K  K  L  M  Y  L  L  R  R  *  *  F  R  K  E  K  T  I  F  L  P  K  M  T  F  C  L  G  S  *  G  I  L  M  M  I  N  S  L  G  T  L  S  S  V  F  Y  W  R  V  E  T  L  L  R  P  D  *  L  L  F  F  G  Y  *  L  N  I  H  M  L  L  M  K  F  E  L  S  R  I  E  *  W  E  K  Q  *  M  E  L  *  L  L  S  K  E  F  G  K  C  I  F  *  L  Q  L  Y  M  R  V  L  G  Y  F  R  L  F  N  L  I  P  S  F  V  K  K  T  I  R  S  L  M  V  R  S  W  L  K  G  R  G  *  R  I  I  H  M  Q  W  G  G  W  R  V  F  G  V  K  I  V  *  N  S  S  Q  K  D  G  W  K  T  G  F  L  R  H  S  V  L  L  N  I  P  F  F  K  V  V  L  G  F  V  W  V  K  I  Y  L  L  W  K  *  R  V  L  L  W  L  *  L  G  N  S  T  F  K  F  I  W  L  K  T  R  H  L  S  S  C  R  D  *  Q  P  P  *  E  A  D  F  P  S  W  F  K  K  D  E  N  N  R  H  *  H  E  F  K  I  *  S  Q  Y  C  T  T  F  V  I  N  Y  *  F  I  L  L  S  F  S  *  R  F  R  L  R  A  S  *  T  M  C  I  *  T  T  N  V  K  K  A  Y  D  L  *  *  Y  N  N  K  I  V  Q  K  N  I  </second_frame>
            <third_frame>   V  *  D  L  Q  K  L  F  E  L  Y  M  V  F  R  V  Q  K  S  L  R  L  V  L  L  S  T  Q  K  I  T  H  W  Y  N  T  C  T  R  S  W  K  C  H  Y  I  K  S  K  Q  R  *  I  H  A  *  N  K  F  R  *  F  S  *  R  K  T  V  F  Y  Y  P  R  R  F  I  R  P  R  N  F  R  R  R  R  R  N  V  E  V  S  T  E  D  G  K  F  R  T  R  T  R  I  D  T  L  V  R  F  R  Y  R  Q  *  R  N  *  K  P  V  D  S  A  F  G  K  *  Y  P  Y  C  F  G  L  T  R  C  F  T  T  F  F  V  R  *  H  L  *  I  F  I  W  Y  G  S  W  L  F  E  I  I  I  T  R  F  R  S  S  R  V  I  *  F  S  F  E  I  V  C  *  K  S  Y  D  G  F  T  F  S  V  E  N  *  K  E  F  E  Y  W  I  R  K  E  A  K  R  S  D  R  K  S  *  C  T  C  *  G  G  N  N  S  E  K  K  K  R  F  F  F  P  K  *  R  F  V  *  V  H  E  E  Y  *  *  *  *  T  P  *  G  H  Y  R  Q  F  S  I  G  G  *  R  H  C  C  V  R  T  D  Y  F  F  L  A  T  S  S  T  S  T  C  Y  *  *  N  S  S  *  V  E  S  S  N  G  K  N  S  K  W  N  S  S  Y  F  R  R  N  S  G  N  A  F  F  D  C  S  Y  T  *  E  Y  *  A  I  S  A  C  S  I  *  F  Q  V  L  S  R  R  R  Y  A  P  *  W  Y  V  R  G  *  R  D  E  G  D  V  S  S  I  C  N  G  E  D  G  G  Y  L  G  *  R  L  F  R  I  Q  A  R  K  M  V  G  R  R  G  F  *  G  T  V  S  F  *  I  S  R  F  S  R  W  C  *  G  L  F  G  *  R  F  I  Y  C  G  N  E  E  C  C  F  G  F  D  *  A  I  R  L  S  S  S  F  G  *  R  P  G  T  *  V  H  A  G  I  D  S  H  R  E  R  R  T  S  H  H  G  S  K  K  T  R  T  I  D  T  D  T  N  S  R  F  R  V  S  I  V  Q  L  L  *  L  I  I  S  L  Y  F  Y  L  L  A  S  V  L  G  L  E  Q  A  E  L  C  V  Y  R  R  L  T  S  K  K  L  M  T  Y  D  D  I  I  T  K  L  F  K  K  I  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0099A03.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="5998" stop="7374"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1374</number_coding_nucleotides>
                  <number_encoded_amino_acids>458</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ECEICKSYLNSTWSLEFKNLCDWYSYLLKKSPTGTIHVHVLGNVITSNPNNVEYMLKTNFDNFPKGKQFSTILGDLLGRGIFAVDGEMWKFQRKMASLELGRVSIRSYAFDIVSDEIRNRLIPLLESNIHTVLDLQDVLRRFSFDSICKFSFGMDPGCLKLSLPDSDLQESFDLASKLSAERAMTVSPLVWKIKRSLNIGSEKKLKEAIEKVDVLAEEVIIQKRKNDFSSQNDVLSRFMRNIDDDKLLRDIIVSFLLAGRDTVASGLTTFFWLLAQHPHVINEIRAESNRVMGKTVNGTLATFEGIREMHFLTAAIHESIRLFPPVQFDSKFCQEDDTLPDGTFVAKGTRVTYHPYAMGRMEGIWGKDCLEFKPERWLEDGVFKAQCPFKYPVFQGGVRVCLGKDLSIVEMKSVALALIRQFDFQVHLAKDQAPKFMPGLTATVRGGLPIMVQKRREQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="15183" PGL_stop="14665"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="15183" e_stop="14665"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.967"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.967">
            <gDNA_exon_boundary e_start="15183" e_stop="14665" e_length="519"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15183" stop="14665"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U341961" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACAAGAAGCACAAATAATCAATAGCAAATGTACGCAGCAAAAGAAGCCAAAATCGAGTCCAAGATCGAGTAAAATGGGTCAGCCAAGTAATCAAGAAAATAGAGTTATTTGTCAAAGCCAAAAATAATATATTAAAGGTATAAGTTGATACAAATAAGGAAAACTTTAAATATATTATTAAGGAAGGAAGTTGTATATAATAAGGATTGTACTTTAAAAGGGAATCCTTGTTTAATAATAACTTCCTTACCTTATCTGATAAGGACTGAAGGCAAAAGGAACTCTATAAGAAGAAGAAGACGCGTATGAAGAATACGACGACTTCACGCAGAGAACAAGGGAGAATTATTCATCAAATTGAAGTCTTCAAGGTTGATAGGATTACTACGTTTAAAACATTCTTGAGTAAGAAGGTTTTATCGTGTAGAACTATTTGTCTTGTTTTTGTTCTTAATTGTAGTTTACAGTTTATTGTACAAAGGGTGGGTTTGACTCTTTGTAGGGTTGAGTGTTAGTAAG</gDNA_template>
            <first_frame> T  R  S  T  N  N  Q  *  Q  M  Y  A  A  K  E  A  K  I  E  S  K  I  E  *  N  G  S  A  K  *  S  R  K  *  S  Y  L  S  K  P  K  I  I  Y  *  R  Y  K  L  I  Q  I  R  K  T  L  N  I  L  L  R  K  E  V  V  Y  N  K  D  C  T  L  K  G  N  P  C  L  I  I  T  S  L  P  Y  L  I  R  T  E  G  K  R  N  S  I  R  R  R  R  R  V  *  R  I  R  R  L  H  A  E  N  K  G  E  L  F  I  K  L  K  S  S  R  L  I  G  L  L  R  L  K  H  S  *  V  R  R  F  Y  R  V  E  L  F  V  L  F  L  F  L  I  V  V  Y  S  L  L  Y  K  G  W  V  *  L  F  V  G  L  S  V  S  K </first_frame>
            <second_frame>  Q  E  A  Q  I  I  N  S  K  C  T  Q  Q  K  K  P  K  S  S  P  R  S  S  K  M  G  Q  P  S  N  Q  E  N  R  V  I  C  Q  S  Q  K  *  Y  I  K  G  I  S  *  Y  K  *  G  K  L  *  I  Y  Y  *  G  R  K  L  Y  I  I  R  I  V  L  *  K  G  I  L  V  *  *  *  L  P  Y  L  I  *  *  G  L  K  A  K  G  T  L  *  E  E  E  D  A  Y  E  E  Y  D  D  F  T  Q  R  T  R  E  N  Y  S  S  N  *  S  L  Q  G  *  *  D  Y  Y  V  *  N  I  L  E  *  E  G  F  I  V  *  N  Y  L  S  C  F  C  S  *  L  *  F  T  V  Y  C  T  K  G  G  F  D  S  L  *  G  *  V  L  V   </second_frame>
            <third_frame>   K  K  H  K  *  S  I  A  N  V  R  S  K  R  S  Q  N  R  V  Q  D  R  V  K  W  V  S  Q  V  I  K  K  I  E  L  F  V  K  A  K  N  N  I  L  K  V  *  V  D  T  N  K  E  N  F  K  Y  I  I  K  E  G  S  C  I  *  *  G  L  Y  F  K  R  E  S  L  F  N  N  N  F  L  T  L  S  D  K  D  *  R  Q  K  E  L  Y  K  K  K  K  T  R  M  K  N  T  T  T  S  R  R  E  Q  G  R  I  I  H  Q  I  E  V  F  K  V  D  R  I  T  T  F  K  T  F  L  S  K  K  V  L  S  C  R  T  I  C  L  V  F  V  L  N  C  S  L  Q  F  I  V  Q  R  V  G  L  T  L  C  R  V  E  C  *  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0099A03.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="14914" stop="14669"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>243</number_coding_nucleotides>
                  <number_encoded_amino_acids>81</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RQKELYKKKKTRMKNTTTSRREQGRIIHQIEVFKVDRITTFKTFLSKKVLSCRTICLVFVLNCSLQFIVQRVGLTLCRVEC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="23450" PGL_stop="22772"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="23450" e_stop="23435"/>
            <exon e_start="22954" e_stop="22772"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.198" acc_prob="0.000" e_score="0.625"/>
          <exon-only e_score="0.913"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.625">
            <gDNA_exon_boundary e_start="23450" e_stop="23435" e_length="16"/>
          </exon>
          <intron i_serial="1" don_prob="0.198" acc_prob="0.000">
            <gDNA_intron_boundary i_start="23434" i_stop="22955" i_length="480"/>
          </intron>
          <exon e_serial="2" e_score="0.913">
            <gDNA_exon_boundary e_start="22954" e_stop="22772" e_length="183"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23450" stop="23435"/>
              <exon start="22954" stop="22772"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U338791" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCTTGGCTTTTCTTT : TTTGAAATACATATTATAATTTCAACTGTTTGCAAATGTTTTCCATGAAAATTCTAAGTTCAAGCAAAATCTGTAAGTAGACAATAAACCTCCTAAAATACACTCTCAAGGGGAACAACAAATGGAAAAGGGGATACTTCATAAACTGATTTCTTCGACTTCTAATCGAAAAGACTGAAACCC</gDNA_template>
            <first_frame> F  L  A  F  L   : F  *  N  T  Y  Y  N  F  N  C  L  Q  M  F  S  M  K  I  L  S  S  S  K  I  C  K  *  T  I  N  L  L  K  Y  T  L  K  G  N  N  K  W  K  R  G  Y  F  I  N  *  F  L  R  L  L  I  E  K  T  E  T  </first_frame>
            <second_frame>  S  W  L  F  F  :  F  E  I  H  I  I  I  S  T  V  C  K  C  F  P  *  K  F  *  V  Q  A  K  S  V  S  R  Q  *  T  S  *  N  T  L  S  R  G  T  T  N  G  K  G  D  T  S  *  T  D  F  F  D  F  *  S  K  R  L  K  P </second_frame>
            <third_frame>   L  G  F  S  F :   L  K  Y  I  L  *  F  Q  L  F  A  N  V  F  H  E  N  S  K  F  K  Q  N  L  *  V  D  N  K  P  P  K  I  H  S  Q  G  E  Q  Q  M  E  K  G  I  L  H  K  L  I  S  S  T  S  N  R  K  D  *  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06SLm0099A03.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="25383" PGL_stop="25964"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="25383" e_stop="25964"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="25383" e_stop="25964" e_length="582"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25383" stop="25964"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U346052" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAATCCAAAGTAGCAATTTTCGGTAAAGAATTACTCACGGTGCATACGATGGATGCTTCCGCCGCAGCGCGGCCACCTTTGGCTACCCACTTGCAACCATCACATTCTCAGGTATATATAACTGCCGACAATCTCCGCACGTTCTCCGACTCCCTCACGGCTTTCCAACAATGCTTGAATGATCTGCAACGACACATGAATTCAATACAAACCTCAATCAACTCTATGCTGCTTCCCCCTCAATCTTTACCTGCCTCATCATCATCACCAGCAGTTGCAACCCCAGCCCCGGCCCTGGCCCCTGAGCCAGAATCATCTTGGGACTCTGACCCCTCTGAAGACCTAGAAGAAGAAGAAGAAGTCAACCAAGAGGAGAAAGTAGTGAAGGGAGAGGGAGGCGAGGAAGTGAATTCGCCTCACTTAGAACTGAAATTGCCTCCTTCAGAACTGAAATCGCCTCGTTTGGAACTGCAATTGCCTCCTTCAGAACTGAAATCGCCTCGTTTGGAACTGCAATTGCCTCCTTCAGAACTGAAATCGCCTCGTTTGGAACTGAAATTGCCTCCTTCAGAACTGAAATC</gDNA_template>
            <first_frame> K  I  Q  S  S  N  F  R  *  R  I  T  H  G  A  Y  D  G  C  F  R  R  S  A  A  T  F  G  Y  P  L  A  T  I  T  F  S  G  I  Y  N  C  R  Q  S  P  H  V  L  R  L  P  H  G  F  P  T  M  L  E  *  S  A  T  T  H  E  F  N  T  N  L  N  Q  L  Y  A  A  S  P  S  I  F  T  C  L  I  I  I  T  S  S  C  N  P  S  P  G  P  G  P  *  A  R  I  I  L  G  L  *  P  L  *  R  P  R  R  R  R  R  S  Q  P  R  G  E  S  S  E  G  R  G  R  R  G  S  E  F  A  S  L  R  T  E  I  A  S  F  R  T  E  I  A  S  F  G  T  A  I  A  S  F  R  T  E  I  A  S  F  G  T  A  I  A  S  F  R  T  E  I  A  S  F  G  T  E  I  A  S  F  R  T  E  I </first_frame>
            <second_frame>  K  S  K  V  A  I  F  G  K  E  L  L  T  V  H  T  M  D  A  S  A  A  A  R  P  P  L  A  T  H  L  Q  P  S  H  S  Q  V  Y  I  T  A  D  N  L  R  T  F  S  D  S  L  T  A  F  Q  Q  C  L  N  D  L  Q  R  H  M  N  S  I  Q  T  S  I  N  S  M  L  L  P  P  Q  S  L  P  A  S  S  S  S  P  A  V  A  T  P  A  P  A  L  A  P  E  P  E  S  S  W  D  S  D  P  S  E  D  L  E  E  E  E  E  V  N  Q  E  E  K  V  V  K  G  E  G  G  E  E  V  N  S  P  H  L  E  L  K  L  P  P  S  E  L  K  S  P  R  L  E  L  Q  L  P  P  S  E  L  K  S  P  R  L  E  L  Q  L  P  P  S  E  L  K  S  P  R  L  E  L  K  L  P  P  S  E  L  K   </second_frame>
            <third_frame>   N  P  K  *  Q  F  S  V  K  N  Y  S  R  C  I  R  W  M  L  P  P  Q  R  G  H  L  W  L  P  T  C  N  H  H  I  L  R  Y  I  *  L  P  T  I  S  A  R  S  P  T  P  S  R  L  S  N  N  A  *  M  I  C  N  D  T  *  I  Q  Y  K  P  Q  S  T  L  C  C  F  P  L  N  L  Y  L  P  H  H  H  H  Q  Q  L  Q  P  Q  P  R  P  W  P  L  S  Q  N  H  L  G  T  L  T  P  L  K  T  *  K  K  K  K  K  S  T  K  R  R  K  *  *  R  E  R  E  A  R  K  *  I  R  L  T  *  N  *  N  C  L  L  Q  N  *  N  R  L  V  W  N  C  N  C  L  L  Q  N  *  N  R  L  V  W  N  C  N  C  L  L  Q  N  *  N  R  L  V  W  N  *  N  C  L  L  Q  N  *  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0099A03.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25384" stop="25962"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>579</number_coding_nucleotides>
                  <number_encoded_amino_acids>193</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KSKVAIFGKELLTVHTMDASAAARPPLATHLQPSHSQVYITADNLRTFSDSLTAFQQCLNDLQRHMNSIQTSINSMLLPPQSLPASSSSPAVATPAPALAPEPESSWDSDPSEDLEEEEEVNQEEKVVKGEGGEEVNSPHLELKLPPSELKSPRLELQLPPSELKSPRLELQLPPSELKSPRLELKLPPSELK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="26379" PGL_stop="26934"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="26379" e_stop="26934"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="26379" e_stop="26934" e_length="556"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26379" stop="26934"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U346844" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACCTTTGGGTCGGGGAAGGAAGGCTAAAGTATTGATTTTGGAGTGCTTGTTGTTAATGATTGGAATCTACGATAAGGAAATCGAGCTTGAGAATTGGGTGAAGGAAGAGGCGGAGCATACAGCTTTAGCATGGTTGGAGAGGATGAATTCTGAAGGAGGAAAGCCTCAAGAAATCGATGCCCGAGGTTTGCTCTTCTTTATTGGGGGTTTTGGGATTCCAGATCAATTTACAAATGCGAATATCAGAAATTTGTTTCAGGTAAGTAACCTTAAGTGGAGTTGTGATGCACTCAAACGATCAAACGCTCTCTTGGCGAAGCTTCCAGAAATAATAGAGGAAATGGTGGCAAACAAGGCAGTAGTTAAAGCTGTTCATATTGTCTATAGTGTTGGAATGCAGGAGATATTTAACCCTAGGACACTTTTAACAACATTTATAAGAGAGTGTAAGAAATCATTTGATAACATGAATGGATCACAAAGTGCACATCAAGGGAATATTGTAGCAAAAGGGAAGTACTTAGGTGATCTGAGATCGATCATCAAATGTTTGAGA</gDNA_template>
            <first_frame> T  F  G  S  G  K  E  G  *  S  I  D  F  G  V  L  V  V  N  D  W  N  L  R  *  G  N  R  A  *  E  L  G  E  G  R  G  G  A  Y  S  F  S  M  V  G  E  D  E  F  *  R  R  K  A  S  R  N  R  C  P  R  F  A  L  L  Y  W  G  F  W  D  S  R  S  I  Y  K  C  E  Y  Q  K  F  V  S  G  K  *  P  *  V  E  L  *  C  T  Q  T  I  K  R  S  L  G  E  A  S  R  N  N  R  G  N  G  G  K  Q  G  S  S  *  S  C  S  Y  C  L  *  C  W  N  A  G  D  I  *  P  *  D  T  F  N  N  I  Y  K  R  V  *  E  I  I  *  *  H  E  W  I  T  K  C  T  S  R  E  Y  C  S  K  R  E  V  L  R  *  S  E  I  D  H  Q  M  F  E  </first_frame>
            <second_frame>  P  L  G  R  G  R  K  A  K  V  L  I  L  E  C  L  L  L  M  I  G  I  Y  D  K  E  I  E  L  E  N  W  V  K  E  E  A  E  H  T  A  L  A  W  L  E  R  M  N  S  E  G  G  K  P  Q  E  I  D  A  R  G  L  L  F  F  I  G  G  F  G  I  P  D  Q  F  T  N  A  N  I  R  N  L  F  Q  V  S  N  L  K  W  S  C  D  A  L  K  R  S  N  A  L  L  A  K  L  P  E  I  I  E  E  M  V  A  N  K  A  V  V  K  A  V  H  I  V  Y  S  V  G  M  Q  E  I  F  N  P  R  T  L  L  T  T  F  I  R  E  C  K  K  S  F  D  N  M  N  G  S  Q  S  A  H  Q  G  N  I  V  A  K  G  K  Y  L  G  D  L  R  S  I  I  K  C  L  R </second_frame>
            <third_frame>   L  W  V  G  E  G  R  L  K  Y  *  F  W  S  A  C  C  *  *  L  E  S  T  I  R  K  S  S  L  R  I  G  *  R  K  R  R  S  I  Q  L  *  H  G  W  R  G  *  I  L  K  E  E  S  L  K  K  S  M  P  E  V  C  S  S  L  L  G  V  L  G  F  Q  I  N  L  Q  M  R  I  S  E  I  C  F  R  *  V  T  L  S  G  V  V  M  H  S  N  D  Q  T  L  S  W  R  S  F  Q  K  *  *  R  K  W  W  Q  T  R  Q  *  L  K  L  F  I  L  S  I  V  L  E  C  R  R  Y  L  T  L  G  H  F  *  Q  H  L  *  E  S  V  R  N  H  L  I  T  *  M  D  H  K  V  H  I  K  G  I  L  *  Q  K  G  S  T  *  V  I  *  D  R  S  S  N  V  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0099A03.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="26380" stop="26934"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>555</number_coding_nucleotides>
                  <number_encoded_amino_acids>185</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PLGRGRKAKVLILECLLLMIGIYDKEIELENWVKEEAEHTALAWLERMNSEGGKPQEIDARGLLFFIGGFGIPDQFTNANIRNLFQVSNLKWSCDALKRSNALLAKLPEIIEEMVANKAVVKAVHIVYSVGMQEIFNPRTLLTTFIRECKKSFDNMNGSQSAHQGNIVAKGKYLGDLRSIIKCLR</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="37136" PGL_stop="40261"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="37136" e_stop="38537"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="37136" e_stop="38537" e_length="1402"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37136" stop="38537"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U329399" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTCGCTCTTCTGAGATCGGTTCTGGTTACTTGAAAGAAGGGTCAGAGCGGAAATTATTTCTGGAACTACCACAATCTTCAACTGCCACTTCTGCTAATAAAGTGGAAGCCCAGACAGTGTCTGCCTTAGATGAAGCTCCAACAACTGTAATCCCATCAGACAAAGAGCAGGCACTAGATTCTGATCTTGTCTCTTGCTCATGTACTTCTATTACTGGAAATAAAGTCATGAGACCTACTTCTAGAAGTCCAAGTTTGATGAGACCTGTTTCCAGAAGCAGACTGTTTGTTAAGAAGAATGTCATTGCTGCTCTCACCAACAGTTCCAAGCAATCTAATGGTGGAATTGACAATTATTTGAGTTGTAGTACCAGTGAGATTCCTTGTCAGACACCTGAATATGTTGATCAGAGAGAAGAGGATAAAGTACCTTCAGAATCATGTGGTGAAAATAGTGTAGAAGTTAGCTCATCTATTCTGGAATCAAGTGTTACCAAACCTGGTCTCAGCTCAAGCAGTTGTAACAGAACAAGATGTATAGTTAAAAAAGGTGATGAAAGATCATTATCAAGAGAAAAAGGAGAGATATCTCAAAGTTCAAAGAGTAGCATTGGGGATTACAGCAGCACCACAAGCCTTAGCGAAGAAAGCTATCGTAGTGGGTCTAGCCGTAGTGGATATCGGCCTCATATGTCCGTAGATTTGAGATGGGAAGCCATTCGTTGTGTTCAGAAGCAGCATGGAAACATTAGTTTGAAGCAATTTAAGATGCTTAAAAAACTTGGTGGAGGGGACATTGGGACTGTTTATCTGTCTGAGCTAATGGGCACAAACTGTCAGTTTGCTGTGAAAGTTATGGACAATGACTTTCTGATCAGCAGGAGGAAGATGACAAGAGCGCAGACTGAAAAAGAAATACTGCAAATACTGGATCATCCTTTTCTACCTACACTCTATGCTCATATTACCAATGACAAGTATTCATGTTTAGTGATGGAATATTGTCCAGGAGGTGATCTGCATGTGCTCCGGCAAAAGCAAGCCAACAAGAATTTCTCTGAACAAGCAGTCAGGTTACTTTTATTATGGTTACTTCTTCCCTGAAACTATTTCTTGTTTATGTCTATTCCTAATCTAGATTCCAAGAGAATAGGCAAATAAATCTGCAAATAAAACTATGCTTTTCTATAACAGGTAATATATATTTTGTGGTCACTCTCTTTTTCATGATTGCTCTCCGATTTATGAAGATACGCATGTCTTGAAGCCCTTACATTAAGACTTTAGAGATACCATTCTTCAATAAGCTAGACTCTTTTGCATCCACAAAATGACTTTTACTTGTCACTTGCTGATGGATAATAGCTTGCTTTATGCTATCGCTTGTTTTATTCAACAAAATT</gDNA_template>
            <first_frame> L  A  L  L  R  S  V  L  V  T  *  K  K  G  Q  S  G  N  Y  F  W  N  Y  H  N  L  Q  L  P  L  L  L  I  K  W  K  P  R  Q  C  L  P  *  M  K  L  Q  Q  L  *  S  H  Q  T  K  S  R  H  *  I  L  I  L  S  L  A  H  V  L  L  L  L  E  I  K  S  *  D  L  L  L  E  V  Q  V  *  *  D  L  F  P  E  A  D  C  L  L  R  R  M  S  L  L  L  S  P  T  V  P  S  N  L  M  V  E  L  T  I  I  *  V  V  V  P  V  R  F  L  V  R  H  L  N  M  L  I  R  E  K  R  I  K  Y  L  Q  N  H  V  V  K  I  V  *  K  L  A  H  L  F  W  N  Q  V  L  P  N  L  V  S  A  Q  A  V  V  T  E  Q  D  V  *  L  K  K  V  M  K  D  H  Y  Q  E  K  K  E  R  Y  L  K  V  Q  R  V  A  L  G  I  T  A  A  P  Q  A  L  A  K  K  A  I  V  V  G  L  A  V  V  D  I  G  L  I  C  P  *  I  *  D  G  K  P  F  V  V  F  R  S  S  M  E  T  L  V  *  S  N  L  R  C  L  K  N  L  V  E  G  T  L  G  L  F  I  C  L  S  *  W  A  Q  T  V  S  L  L  *  K  L  W  T  M  T  F  *  S  A  G  G  R  *  Q  E  R  R  L  K  K  K  Y  C  K  Y  W  I  I  L  F  Y  L  H  S  M  L  I  L  P  M  T  S  I  H  V  *  *  W  N  I  V  Q  E  V  I  C  M  C  S  G  K  S  K  P  T  R  I  S  L  N  K  Q  S  G  Y  F  Y  Y  G  Y  F  F  P  E  T  I  S  C  L  C  L  F  L  I  *  I  P  R  E  *  A  N  K  S  A  N  K  T  M  L  F  Y  N  R  *  Y  I  F  C  G  H  S  L  F  H  D  C  S  P  I  Y  E  D  T  H  V  L  K  P  L  H  *  D  F  R  D  T  I  L  Q  *  A  R  L  F  C  I  H  K  M  T  F  T  C  H  L  L  M  D  N  S  L  L  Y  A  I  A  C  F  I  Q  Q  N  </first_frame>
            <second_frame>  S  L  F  *  D  R  F  W  L  L  E  R  R  V  R  A  E  I  I  S  G  T  T  T  I  F  N  C  H  F  C  *  *  S  G  S  P  D  S  V  C  L  R  *  S  S  N  N  C  N  P  I  R  Q  R  A  G  T  R  F  *  S  C  L  L  L  M  Y  F  Y  Y  W  K  *  S  H  E  T  Y  F  *  K  S  K  F  D  E  T  C  F  Q  K  Q  T  V  C  *  E  E  C  H  C  C  S  H  Q  Q  F  Q  A  I  *  W  W  N  *  Q  L  F  E  L  *  Y  Q  *  D  S  L  S  D  T  *  I  C  *  S  E  R  R  G  *  S  T  F  R  I  M  W  *  K  *  C  R  S  *  L  I  Y  S  G  I  K  C  Y  Q  T  W  S  Q  L  K  Q  L  *  Q  N  K  M  Y  S  *  K  R  *  *  K  I  I  I  K  R  K  R  R  D  I  S  K  F  K  E  *  H  W  G  L  Q  Q  H  H  K  P  *  R  R  K  L  S  *  W  V  *  P  *  W  I  S  A  S  Y  V  R  R  F  E  M  G  S  H  S  L  C  S  E  A  A  W  K  H  *  F  E  A  I  *  D  A  *  K  T  W  W  R  G  H  W  D  C  L  S  V  *  A  N  G  H  K  L  S  V  C  C  E  S  Y  G  Q  *  L  S  D  Q  Q  E  E  D  D  K  S  A  D  *  K  R  N  T  A  N  T  G  S  S  F  S  T  Y  T  L  C  S  Y  Y  Q  *  Q  V  F  M  F  S  D  G  I  L  S  R  R  *  S  A  C  A  P  A  K  A  S  Q  Q  E  F  L  *  T  S  S  Q  V  T  F  I  M  V  T  S  S  L  K  L  F  L  V  Y  V  Y  S  *  S  R  F  Q  E  N  R  Q  I  N  L  Q  I  K  L  C  F  S  I  T  G  N  I  Y  F  V  V  T  L  F  F  M  I  A  L  R  F  M  K  I  R  M  S  *  S  P  Y  I  K  T  L  E  I  P  F  F  N  K  L  D  S  F  A  S  T  K  *  L  L  L  V  T  C  *  W  I  I  A  C  F  M  L  S  L  V  L  F  N  K  I </second_frame>
            <third_frame>   R  S  S  E  I  G  S  G  Y  L  K  E  G  S  E  R  K  L  F  L  E  L  P  Q  S  S  T  A  T  S  A  N  K  V  E  A  Q  T  V  S  A  L  D  E  A  P  T  T  V  I  P  S  D  K  E  Q  A  L  D  S  D  L  V  S  C  S  C  T  S  I  T  G  N  K  V  M  R  P  T  S  R  S  P  S  L  M  R  P  V  S  R  S  R  L  F  V  K  K  N  V  I  A  A  L  T  N  S  S  K  Q  S  N  G  G  I  D  N  Y  L  S  C  S  T  S  E  I  P  C  Q  T  P  E  Y  V  D  Q  R  E  E  D  K  V  P  S  E  S  C  G  E  N  S  V  E  V  S  S  S  I  L  E  S  S  V  T  K  P  G  L  S  S  S  S  C  N  R  T  R  C  I  V  K  K  G  D  E  R  S  L  S  R  E  K  G  E  I  S  Q  S  S  K  S  S  I  G  D  Y  S  S  T  T  S  L  S  E  E  S  Y  R  S  G  S  S  R  S  G  Y  R  P  H  M  S  V  D  L  R  W  E  A  I  R  C  V  Q  K  Q  H  G  N  I  S  L  K  Q  F  K  M  L  K  K  L  G  G  G  D  I  G  T  V  Y  L  S  E  L  M  G  T  N  C  Q  F  A  V  K  V  M  D  N  D  F  L  I  S  R  R  K  M  T  R  A  Q  T  E  K  E  I  L  Q  I  L  D  H  P  F  L  P  T  L  Y  A  H  I  T  N  D  K  Y  S  C  L  V  M  E  Y  C  P  G  G  D  L  H  V  L  R  Q  K  Q  A  N  K  N  F  S  E  Q  A  V  R  L  L  L  L  W  L  L  L  P  *  N  Y  F  L  F  M  S  I  P  N  L  D  S  K  R  I  G  K  *  I  C  K  *  N  Y  A  F  L  *  Q  V  I  Y  I  L  W  S  L  S  F  S  *  L  L  S  D  L  *  R  Y  A  C  L  E  A  L  T  L  R  L  *  R  Y  H  S  S  I  S  *  T  L  L  H  P  Q  N  D  F  Y  L  S  L  A  D  G  *  *  L  A  L  C  Y  R  L  F  Y  S  T  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0099A03.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="37138" stop="38238"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1098</number_coding_nucleotides>
                  <number_encoded_amino_acids>366</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RSSEIGSGYLKEGSERKLFLELPQSSTATSANKVEAQTVSALDEAPTTVIPSDKEQALDSDLVSCSCTSITGNKVMRPTSRSPSLMRPVSRSRLFVKKNVIAALTNSSKQSNGGIDNYLSCSTSEIPCQTPEYVDQREEDKVPSESCGENSVEVSSSILESSVTKPGLSSSSCNRTRCIVKKGDERSLSREKGEISQSSKSSIGDYSSTTSLSEESYRSGSSRSGYRPHMSVDLRWEAIRCVQKQHGNISLKQFKMLKKLGGGDIGTVYLSELMGTNCQFAVKVMDNDFLISRRKMTRAQTEKEILQILDHPFLPTLYAHITNDKYSCLVMEYCPGGDLHVLRQKQANKNFSEQAVRLLLLWLLLP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="38163" e_stop="38207"/>
            <exon e_start="39400" e_stop="40261"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.989" e_score="0.956"/>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.956">
            <gDNA_exon_boundary e_start="38163" e_stop="38207" e_length="45"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.989">
            <gDNA_intron_boundary i_start="38208" i_stop="39399" i_length="1192"/>
          </intron>
          <exon e_serial="2" e_score="0.999">
            <gDNA_exon_boundary e_start="39400" e_stop="40261" e_length="862"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38163" stop="38207"/>
              <exon start="39400" stop="40261"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U332295" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCGGCAAAAGCAAGCCAACAAGAATTTCTCTGAACAAGCAGTCAG : ATTTTATGTAGCGGAAGTTCTTCTTGCTTTGGAATACCTTCACATGCTTGGAGTCATCTACCGAGACTTAAAACCAGAGAATGTCTTGGTTCGAGAAGATGGTCACATCATGCTGTCCGATTTTGATCTGTCTCTTAGATGTGTTGTTAATCCCATGTTGGTGAAATCATGTTCGCCTGTGATTAAGCCTCCAAAGACGTCTAGTCCATGCTCGGAATCTAGCTGCATAGATCCCTTTTGCCTACATCCATCCTGGCAAGTATCCTGCTTCACCCCTAGATTTTTATCTGCAACATCAAAGACACGTAAGCTAAAGGCTGACATCGCTGCACAAGTCACACCTTTGCCACAGCTCGTAGTGGAGCCAACTAATGCCCGATCCAACTCGTTTGTTGGCACCCATGAATACCTGGCTCCAGAGATTATCAAAGGAGAAGGTCATGGCAGTGCAGTAGATTGGTGGACCTTTGGTATCTTTCTATATGAACTGTTATATGGAAGGACACCTTTTAAAGGACCAGGAAATGAGGATACATTAGCAAATGTGGTTTCTCAGTGTCTCAAGTTCCCTTCATATCCTGTGGTTAGCTCTAGTGCGAGAGATCTGATCAGACGGTTATTACAAAAGGAACCAGAGAATAGGTTGGGAGCTGAGAAAGGAGCTGCAGAGATAAAGCAGCATCCTTTCTTCGAGGGACTGAACTGGGCGTTAATACGATGTGAAACACCTCCAGAACTGCCTAGATTCTGTGAATTGGGAAATGTAATCCCTGATACCAACCAACAGAACAAGGAGATTGCCAAGTCTCACAAAGAGTTCAAAAGTATAGAAGAGGACATTGCGTTTGAGATGTTTTAACTT</gDNA_template>
            <first_frame> P  A  K  A  S  Q  Q  E  F  L  *  T  S  S  Q  :  I  L  C  S  G  S  S  S  C  F  G  I  P  S  H  A  W  S  H  L  P  R  L  K  T  R  E  C  L  G  S  R  R  W  S  H  H  A  V  R  F  *  S  V  S  *  M  C  C  *  S  H  V  G  E  I  M  F  A  C  D  *  A  S  K  D  V  *  S  M  L  G  I  *  L  H  R  S  L  L  P  T  S  I  L  A  S  I  L  L  H  P  *  I  F  I  C  N  I  K  D  T  *  A  K  G  *  H  R  C  T  S  H  T  F  A  T  A  R  S  G  A  N  *  C  P  I  Q  L  V  C  W  H  P  *  I  P  G  S  R  D  Y  Q  R  R  R  S  W  Q  C  S  R  L  V  D  L  W  Y  L  S  I  *  T  V  I  W  K  D  T  F  *  R  T  R  K  *  G  Y  I  S  K  C  G  F  S  V  S  Q  V  P  F  I  S  C  G  *  L  *  C  E  R  S  D  Q  T  V  I  T  K  G  T  R  E  *  V  G  S  *  E  R  S  C  R  D  K  A  A  S  F  L  R  G  T  E  L  G  V  N  T  M  *  N  T  S  R  T  A  *  I  L  *  I  G  K  C  N  P  *  Y  Q  P  T  E  Q  G  D  C  Q  V  S  Q  R  V  Q  K  Y  R  R  G  H  C  V  *  D  V  L  T  </first_frame>
            <second_frame>  R  Q  K  Q  A  N  K  N  F  S  E  Q  A  V  R :   F  Y  V  A  E  V  L  L  A  L  E  Y  L  H  M  L  G  V  I  Y  R  D  L  K  P  E  N  V  L  V  R  E  D  G  H  I  M  L  S  D  F  D  L  S  L  R  C  V  V  N  P  M  L  V  K  S  C  S  P  V  I  K  P  P  K  T  S  S  P  C  S  E  S  S  C  I  D  P  F  C  L  H  P  S  W  Q  V  S  C  F  T  P  R  F  L  S  A  T  S  K  T  R  K  L  K  A  D  I  A  A  Q  V  T  P  L  P  Q  L  V  V  E  P  T  N  A  R  S  N  S  F  V  G  T  H  E  Y  L  A  P  E  I  I  K  G  E  G  H  G  S  A  V  D  W  W  T  F  G  I  F  L  Y  E  L  L  Y  G  R  T  P  F  K  G  P  G  N  E  D  T  L  A  N  V  V  S  Q  C  L  K  F  P  S  Y  P  V  V  S  S  S  A  R  D  L  I  R  R  L  L  Q  K  E  P  E  N  R  L  G  A  E  K  G  A  A  E  I  K  Q  H  P  F  F  E  G  L  N  W  A  L  I  R  C  E  T  P  P  E  L  P  R  F  C  E  L  G  N  V  I  P  D  T  N  Q  Q  N  K  E  I  A  K  S  H  K  E  F  K  S  I  E  E  D  I  A  F  E  M  F  *  L </second_frame>
            <third_frame>   G  K  S  K  P  T  R  I  S  L  N  K  Q  S   : D  F  M  *  R  K  F  F  L  L  W  N  T  F  T  C  L  E  S  S  T  E  T  *  N  Q  R  M  S  W  F  E  K  M  V  T  S  C  C  P  I  L  I  C  L  L  D  V  L  L  I  P  C  W  *  N  H  V  R  L  *  L  S  L  Q  R  R  L  V  H  A  R  N  L  A  A  *  I  P  F  A  Y  I  H  P  G  K  Y  P  A  S  P  L  D  F  Y  L  Q  H  Q  R  H  V  S  *  R  L  T  S  L  H  K  S  H  L  C  H  S  S  *  W  S  Q  L  M  P  D  P  T  R  L  L  A  P  M  N  T  W  L  Q  R  L  S  K  E  K  V  M  A  V  Q  *  I  G  G  P  L  V  S  F  Y  M  N  C  Y  M  E  G  H  L  L  K  D  Q  E  M  R  I  H  *  Q  M  W  F  L  S  V  S  S  S  L  H  I  L  W  L  A  L  V  R  E  I  *  S  D  G  Y  Y  K  R  N  Q  R  I  G  W  E  L  R  K  E  L  Q  R  *  S  S  I  L  S  S  R  D  *  T  G  R  *  Y  D  V  K  H  L  Q  N  C  L  D  S  V  N  W  E  M  *  S  L  I  P  T  N  R  T  R  R  L  P  S  L  T  K  S  S  K  V  *  K  R  T  L  R  L  R  C  F  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0099A03.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="38164" stop="38207"/>
                    <exon start="39400" stop="40258"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>900</number_coding_nucleotides>
                  <number_encoded_amino_acids>300</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RQKQANKNFSEQAVRFYVAEVLLALEYLHMLGVIYRDLKPENVLVREDGHIMLSDFDLSLRCVVNPMLVKSCSPVIKPPKTSSPCSESSCIDPFCLHPSWQVSCFTPRFLSATSKTRKLKADIAAQVTPLPQLVVEPTNARSNSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLYGRTPFKGPGNEDTLANVVSQCLKFPSYPVVSSSARDLIRRLLQKEPENRLGAEKGAAEIKQHPFFEGLNWALIRCETPPELPRFCELGNVIPDTNQQNKEIAKSHKEFKSIEEDIAFEMF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="41495" PGL_stop="40642"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="41495" e_stop="41029"/>
            <exon e_start="40946" e_stop="40642"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.976" acc_prob="0.999" e_score="0.910"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.910">
            <gDNA_exon_boundary e_start="41495" e_stop="41029" e_length="467"/>
          </exon>
          <intron i_serial="1" don_prob="0.976" acc_prob="0.999">
            <gDNA_intron_boundary i_start="41028" i_stop="40947" i_length="82"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="40946" e_stop="40642" e_length="305"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41495" stop="41029"/>
              <exon start="40946" stop="40642"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U314043" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGTCATATGCATTTCATGCACTTTCAAATATTCTTTTATGCTGATGGACTCCTCTTTTTATATACCTGGTCCTGGACTACAAATTCAATTGCACCTCTTTTCTAGAATAAATCATTTTATGCAAAGCTTGTTTTAGTTATTTAAGCATCCATGAAAGATTCACTTCTCTCGTAGTGTGCCACAAATATGTTAGAAAAAGAAGGGAATGTTGCGGATATTAACCATCCTAACGTGGTGCAGGTTAAACTGATTGGTTATATTCATTTTATTACGAGATTGTAAATTTACAAGTTATTGAATAACACAGGATGTCAGAAGAAGCACCTTTCTATCCCAGAGAAAAGCTTGTTGAGAAGCAAAAGTTTTACCAAAGCGTCCACAAGCACACATACTTGAAAGGTCGTTTTGACAAGGTCACCTCAGTGGCCATTCCAGCTGCTTTGGCTGCTTCTGCTTTGTTTATGATT : GGGAGAGGGATCTACAACATGTCTCATGGCATAGGGAAGAAGGAATAAATAGCGGCTACTGCTCGACTATTGTTCCTATGGTGGCTGAATTTGAAACGACCTGTTTGTTCTTTTGTTGATTTTCAATTATCAGTAGCTAATACTAGTCACTTGGATGCTGATATTAAAACATGCCGATTTATGGCATATGCTATCAGTACTCCGCAGCATAATAACACATTATCTCCTCTGTTTAGGGGTTCTGCATATTTGTATTAAACGGTGTTTGTGTGGAAATAAGCATGTCATTTTCTGGCTCTCCTTAA</gDNA_template>
            <first_frame> S  H  M  H  F  M  H  F  Q  I  F  F  Y  A  D  G  L  L  F  L  Y  T  W  S  W  T  T  N  S  I  A  P  L  F  *  N  K  S  F  Y  A  K  L  V  L  V  I  *  A  S  M  K  D  S  L  L  S  *  C  A  T  N  M  L  E  K  E  G  N  V  A  D  I  N  H  P  N  V  V  Q  V  K  L  I  G  Y  I  H  F  I  T  R  L  *  I  Y  K  L  L  N  N  T  G  C  Q  K  K  H  L  S  I  P  E  K  S  L  L  R  S  K  S  F  T  K  A  S  T  S  T  H  T  *  K  V  V  L  T  R  S  P  Q  W  P  F  Q  L  L  W  L  L  L  L  C  L  *  L :   G  E  G  S  T  T  C  L  M  A  *  G  R  R  N  K  *  R  L  L  L  D  Y  C  S  Y  G  G  *  I  *  N  D  L  F  V  L  L  L  I  F  N  Y  Q  *  L  I  L  V  T  W  M  L  I  L  K  H  A  D  L  W  H  M  L  S  V  L  R  S  I  I  T  H  Y  L  L  C  L  G  V  L  H  I  C  I  K  R  C  L  C  G  N  K  H  V  I  F  W  L  S  L  </first_frame>
            <second_frame>  V  I  C  I  S  C  T  F  K  Y  S  F  M  L  M  D  S  S  F  Y  I  P  G  P  G  L  Q  I  Q  L  H  L  F  S  R  I  N  H  F  M  Q  S  L  F  *  L  F  K  H  P  *  K  I  H  F  S  R  S  V  P  Q  I  C  *  K  K  K  G  M  L  R  I  L  T  I  L  T  W  C  R  L  N  *  L  V  I  F  I  L  L  R  D  C  K  F  T  S  Y  *  I  T  Q  D  V  R  R  S  T  F  L  S  Q  R  K  A  C  *  E  A  K  V  L  P  K  R  P  Q  A  H  I  L  E  R  S  F  *  Q  G  H  L  S  G  H  S  S  C  F  G  C  F  C  F  V  Y  D   : W  E  R  D  L  Q  H  V  S  W  H  R  E  E  G  I  N  S  G  Y  C  S  T  I  V  P  M  V  A  E  F  E  T  T  C  L  F  F  C  *  F  S  I  I  S  S  *  Y  *  S  L  G  C  *  Y  *  N  M  P  I  Y  G  I  C  Y  Q  Y  S  A  A  *  *  H  I  I  S  S  V  *  G  F  C  I  F  V  L  N  G  V  C  V  E  I  S  M  S  F  S  G  S  P  * </second_frame>
            <third_frame>   S  Y  A  F  H  A  L  S  N  I  L  L  C  *  W  T  P  L  F  I  Y  L  V  L  D  Y  K  F  N  C  T  S  F  L  E  *  I  I  L  C  K  A  C  F  S  Y  L  S  I  H  E  R  F  T  S  L  V  V  C  H  K  Y  V  R  K  R  R  E  C  C  G  Y  *  P  S  *  R  G  A  G  *  T  D  W  L  Y  S  F  Y  Y  E  I  V  N  L  Q  V  I  E  *  H  R  M  S  E  E  A  P  F  Y  P  R  E  K  L  V  E  K  Q  K  F  Y  Q  S  V  H  K  H  T  Y  L  K  G  R  F  D  K  V  T  S  V  A  I  P  A  A  L  A  A  S  A  L  F  M  I  :  G  R  G  I  Y  N  M  S  H  G  I  G  K  K  E  *  I  A  A  T  A  R  L  L  F  L  W  W  L  N  L  K  R  P  V  C  S  F  V  D  F  Q  L  S  V  A  N  T  S  H  L  D  A  D  I  K  T  C  R  F  M  A  Y  A  I  S  T  P  Q  H  N  N  T  L  S  P  L  F  R  G  S  A  Y  L  Y  *  T  V  F  V  W  K  *  A  C  H  F  L  A  L  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0099A03.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41193" stop="41029"/>
                    <exon start="40946" stop="40899"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HRMSEEAPFYPREKLVEKQKFYQSVHKHTYLKGRFDKVTSVAIPAALAASALFMIGRGIYNMSHGIGKKE*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0099A03.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="40898" stop="40689"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IAATARLLFLWWLNLKRPVCSFVDFQLSVANTSHLDADIKTCRFMAYAISTPQHNNTLSPLFRGSAYLY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="42648" PGL_stop="41857"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="42648" e_stop="41857"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.984"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.984">
            <gDNA_exon_boundary e_start="42648" e_stop="41857" e_length="792"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42648" stop="41857"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U332226" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAAGATAATAATGACATGGGTTGACTCAGTTAGCGAGATGGCTCAATTCTGTAGTTCGAGTCATATTGGGGGTAATTAAGAACCGCAGTCGATCCATAACAGTGCGTTAGAAATATGATTATTAGGTTTCTCTTTTAGATTTTGTGGTTTCTCGTGTTATTATCTATAGGAGCATCGAGCTGTAAGACTAGCTCAATTCATTTTATTAACATGAAGATGAATCATAAGGTTGCTCAGGTTAATTATTCTTAGGGAATAATTGAACAATAATACAGTCTGGTGAAAGGGTTATGTCTTCGCTGTTAAGTCAAGCCATGCTTATTGCTCATTTGGTGCAAAAATCACTTAAATCACGGAGCTAATTGGCTAATTCATTAAGACATGGTTGTGGTTGGACTTCACATATCTGTAACCATATAACCTTTGATGTTAATATGGGTTACATTACCATCCTGTTTTTTTACCCCTGATTTAACTATGCCACCAACATATGTGATCAGAGCATTTGTGTCTTTTCTTCTTAATTCTCTTAATCAGGGGAAGTGATATTATACTTGTTCAATGAAAATTTGAAGGTGCAAGTCATGGCTGTCATATGATCAGTGTGTTGCTGTTTCTTTTTGAATAGTTAAATCTTAGAGTCTTGTTTTCCTTTACACTAGATCCATTGAACTTGATTCTACTAAAAACCATCTCTCATCTCAGCCTTACAGCTCGACACAGCATCTATAATCTCTTTTCATTCTTCTTCAAGAGTTACAGTCACCATTAGAACATACCAATATTCATTTG</gDNA_template>
            <first_frame> E  D  N  N  D  M  G  *  L  S  *  R  D  G  S  I  L  *  F  E  S  Y  W  G  *  L  R  T  A  V  D  P  *  Q  C  V  R  N  M  I  I  R  F  L  F  *  I  L  W  F  L  V  L  L  S  I  G  A  S  S  C  K  T  S  S  I  H  F  I  N  M  K  M  N  H  K  V  A  Q  V  N  Y  S  *  G  I  I  E  Q  *  Y  S  L  V  K  G  L  C  L  R  C  *  V  K  P  C  L  L  L  I  W  C  K  N  H  L  N  H  G  A  N  W  L  I  H  *  D  M  V  V  V  G  L  H  I  S  V  T  I  *  P  L  M  L  I  W  V  T  L  P  S  C  F  F  T  P  D  L  T  M  P  P  T  Y  V  I  R  A  F  V  S  F  L  L  N  S  L  N  Q  G  K  *  Y  Y  T  C  S  M  K  I  *  R  C  K  S  W  L  S  Y  D  Q  C  V  A  V  S  F  *  I  V  K  S  *  S  L  V  F  L  Y  T  R  S  I  E  L  D  S  T  K  N  H  L  S  S  Q  P  Y  S  S  T  Q  H  L  *  S  L  F  I  L  L  Q  E  L  Q  S  P  L  E  H  T  N  I  H  L </first_frame>
            <second_frame>  K  I  I  M  T  W  V  D  S  V  S  E  M  A  Q  F  C  S  S  S  H  I  G  G  N  *  E  P  Q  S  I  H  N  S  A  L  E  I  *  L  L  G  F  S  F  R  F  C  G  F  S  C  Y  Y  L  *  E  H  R  A  V  R  L  A  Q  F  I  L  L  T  *  R  *  I  I  R  L  L  R  L  I  I  L  R  E  *  L  N  N  N  T  V  W  *  K  G  Y  V  F  A  V  K  S  S  H  A  Y  C  S  F  G  A  K  I  T  *  I  T  E  L  I  G  *  F  I  K  T  W  L  W  L  D  F  T  Y  L  *  P  Y  N  L  *  C  *  Y  G  L  H  Y  H  P  V  F  L  P  L  I  *  L  C  H  Q  H  M  *  S  E  H  L  C  L  F  F  L  I  L  L  I  R  G  S  D  I  I  L  V  Q  *  K  F  E  G  A  S  H  G  C  H  M  I  S  V  L  L  F  L  F  E  *  L  N  L  R  V  L  F  S  F  T  L  D  P  L  N  L  I  L  L  K  T  I  S  H  L  S  L  T  A  R  H  S  I  Y  N  L  F  S  F  F  F  K  S  Y  S  H  H  *  N  I  P  I  F  I   </second_frame>
            <third_frame>   R  *  *  *  H  G  L  T  Q  L  A  R  W  L  N  S  V  V  R  V  I  L  G  V  I  K  N  R  S  R  S  I  T  V  R  *  K  Y  D  Y  *  V  S  L  L  D  F  V  V  S  R  V  I  I  Y  R  S  I  E  L  *  D  *  L  N  S  F  Y  *  H  E  D  E  S  *  G  C  S  G  *  L  F  L  G  N  N  *  T  I  I  Q  S  G  E  R  V  M  S  S  L  L  S  Q  A  M  L  I  A  H  L  V  Q  K  S  L  K  S  R  S  *  L  A  N  S  L  R  H  G  C  G  W  T  S  H  I  C  N  H  I  T  F  D  V  N  M  G  Y  I  T  I  L  F  F  Y  P  *  F  N  Y  A  T  N  I  C  D  Q  S  I  C  V  F  S  S  *  F  S  *  S  G  E  V  I  L  Y  L  F  N  E  N  L  K  V  Q  V  M  A  V  I  *  S  V  C  C  C  F  F  L  N  S  *  I  L  E  S  C  F  P  L  H  *  I  H  *  T  *  F  Y  *  K  P  S  L  I  S  A  L  Q  L  D  T  A  S  I  I  S  F  H  S  S  S  R  V  T  V  T  I  R  T  Y  Q  Y  S  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06SLm0099A03.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="47986" PGL_stop="47483"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="47986" e_stop="47483"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.982"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.982">
            <gDNA_exon_boundary e_start="47986" e_stop="47483" e_length="504"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47986" stop="47483"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U347083" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTCCCCTTCAGATCCCTTTTCTTCTTCTTGTAACCAAAAAAAGAAAATGAGAGATTTTGCTTCTTGTTTCAATGAATATGCTGTTCAAGTTTCTGATAATACTTCTTGTTCTAGTTACTCAAACTCTGCTTGTATCCCTCCTTCTATAATTCCTTCAGTACAAAACACTGTGAATTGTTTGTACAAAGTCAATTTATCCAATAAAAAACATGTCTTGATCACAATTTCATGGTGCAAAACAAATGTAACACAAGGCTTGAGTGTACACTTTGGTGATGATCATCCAAATGTATTCAAACTCAACACGAATACGCGTCTTTTTAGGAAGAAGAAGGGGAGTAAATCAATGGATTTGGATCATTTTAAGGTTGAAATCATTTGGGATTTGTGTGGAGCTAGGTACTTAAGTAGTGGTCCTGAACCAATTGATGGATATTATGTACTGATCATAGTTGATTCACAACTTGGAGTTATTCTTGGTGATATGGCTGAAGAAGCATCAT</gDNA_template>
            <first_frame> F  P  L  Q  I  P  F  L  L  L  V  T  K  K  R  K  *  E  I  L  L  L  V  S  M  N  M  L  F  K  F  L  I  I  L  L  V  L  V  T  Q  T  L  L  V  S  L  L  L  *  F  L  Q  Y  K  T  L  *  I  V  C  T  K  S  I  Y  P  I  K  N  M  S  *  S  Q  F  H  G  A  K  Q  M  *  H  K  A  *  V  Y  T  L  V  M  I  I  Q  M  Y  S  N  S  T  R  I  R  V  F  L  G  R  R  R  G  V  N  Q  W  I  W  I  I  L  R  L  K  S  F  G  I  C  V  E  L  G  T  *  V  V  V  L  N  Q  L  M  D  I  M  Y  *  S  *  L  I  H  N  L  E  L  F  L  V  I  W  L  K  K  H  H </first_frame>
            <second_frame>  F  P  F  R  S  L  F  F  F  L  *  P  K  K  E  N  E  R  F  C  F  L  F  Q  *  I  C  C  S  S  F  *  *  Y  F  L  F  *  L  L  K  L  C  L  Y  P  S  F  Y  N  S  F  S  T  K  H  C  E  L  F  V  Q  S  Q  F  I  Q  *  K  T  C  L  D  H  N  F  M  V  Q  N  K  C  N  T  R  L  E  C  T  L  W  *  *  S  S  K  C  I  Q  T  Q  H  E  Y  A  S  F  *  E  E  E  G  E  *  I  N  G  F  G  S  F  *  G  *  N  H  L  G  F  V  W  S  *  V  L  K  *  W  S  *  T  N  *  W  I  L  C  T  D  H  S  *  F  T  T  W  S  Y  S  W  *  Y  G  *  R  S  I   </second_frame>
            <third_frame>   S  P  S  D  P  F  S  S  S  C  N  Q  K  K  K  M  R  D  F  A  S  C  F  N  E  Y  A  V  Q  V  S  D  N  T  S  C  S  S  Y  S  N  S  A  C  I  P  P  S  I  I  P  S  V  Q  N  T  V  N  C  L  Y  K  V  N  L  S  N  K  K  H  V  L  I  T  I  S  W  C  K  T  N  V  T  Q  G  L  S  V  H  F  G  D  D  H  P  N  V  F  K  L  N  T  N  T  R  L  F  R  K  K  K  G  S  K  S  M  D  L  D  H  F  K  V  E  I  I  W  D  L  C  G  A  R  Y  L  S  S  G  P  E  P  I  D  G  Y  Y  V  L  I  I  V  D  S  Q  L  G  V  I  L  G  D  M  A  E  E  A  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0099A03.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="47984" stop="47484"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>501</number_coding_nucleotides>
                  <number_encoded_amino_acids>167</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SPSDPFSSSCNQKKKMRDFASCFNEYAVQVSDNTSCSSYSNSACIPPSIIPSVQNTVNCLYKVNLSNKKHVLITISWCKTNVTQGLSVHFGDDHPNVFKLNTNTRLFRKKKGSKSMDLDHFKVEIIWDLCGARYLSSGPEPIDGYYVLIIVDSQLGVILGDMAEEAS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="51538" PGL_stop="50683"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="51538" e_stop="51362"/>
            <exon e_start="51248" e_stop="50683"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.819" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="51538" e_stop="51362" e_length="177"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.819">
            <gDNA_intron_boundary i_start="51361" i_stop="51249" i_length="113"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="51248" e_stop="50683" e_length="566"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51538" stop="51362"/>
              <exon start="51248" stop="50683"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U324828" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTGGATTCTCTTCGAGAATGTGATGGCTTTCCAACGAACCAAGGCTACATTTATCGGCTTGCTAGAAGCAAAAAGAGCTAATGAATGGGTTGTCACGGAGAAACTAGGTGATGCTCTCAAGAACAAAGAAAAAACAAAACAAACCAAAAAACCCCGAGGATCTCTATTTGGAGACAG : GATTCTTCCACAAGAATTGGGATTCGCAGTTTTCCTTTTCTTTTGTGGATGCTATGATGTCCTCTATGGGAAAAGCCAGTACTTTCTTTACATCTTCCTCCAAGTCATCACTTTCACAATTGCTGGATTTGGCTACATTGGCACCATCGTCCCCTCGTAATAGCAGAAACTTCAAAAAAAAAAAAATCGTCCTGTATTGACTCGTGTACACTAAAATAAATTTTTGAGTGCTTTCGTGCAACCATTTTCAAAGGATGCCAAACTCAAAATCTCCGGATAATTTTCTTAGAGATACTGTGTTGGTAAGGAGGAGCGAAGAGCAAAGAGATATCTATATTAAGCCCAGAACACAGAAGAAGACGATAAAACAGATGAATTAGTGTAGATAGATTGTATTTTTCTTCTATTGAAGCTCTTTAGTTGTGTGACATTGTAATTCTATAGCTTGCAAGTCATTTTTCTTTCTGTTCTTGTTCTCTTTGTCTCTGTCTTTCAAGAGGGACAAAAGCTCAGGATATTGCGAAAAGGACAAAACTTATAATCAAATTTTTGTCATTCTAGCTTCA</gDNA_template>
            <first_frame> L  D  S  L  R  E  C  D  G  F  P  T  N  Q  G  Y  I  Y  R  L  A  R  S  K  K  S  *  *  M  G  C  H  G  E  T  R  *  C  S  Q  E  Q  R  K  N  K  T  N  Q  K  T  P  R  I  S  I  W  R  Q  :  D  S  S  T  R  I  G  I  R  S  F  P  F  L  L  W  M  L  *  C  P  L  W  E  K  P  V  L  S  L  H  L  P  P  S  H  H  F  H  N  C  W  I  W  L  H  W  H  H  R  P  L  V  I  A  E  T  S  K  K  K  K  S  S  C  I  D  S  C  T  L  K  *  I  F  E  C  F  R  A  T  I  F  K  G  C  Q  T  Q  N  L  R  I  I  F  L  E  I  L  C  W  *  G  G  A  K  S  K  E  I  S  I  L  S  P  E  H  R  R  R  R  *  N  R  *  I  S  V  D  R  L  Y  F  S  S  I  E  A  L  *  L  C  D  I  V  I  L  *  L  A  S  H  F  S  F  C  S  C  S  L  C  L  C  L  S  R  G  T  K  A  Q  D  I  A  K  R  T  K  L  I  I  K  F  L  S  F  *  L   </first_frame>
            <second_frame>  W  I  L  F  E  N  V  M  A  F  Q  R  T  K  A  T  F  I  G  L  L  E  A  K  R  A  N  E  W  V  V  T  E  K  L  G  D  A  L  K  N  K  E  K  T  K  Q  T  K  K  P  R  G  S  L  F  G  D  R :   I  L  P  Q  E  L  G  F  A  V  F  L  F  F  C  G  C  Y  D  V  L  Y  G  K  S  Q  Y  F  L  Y  I  F  L  Q  V  I  T  F  T  I  A  G  F  G  Y  I  G  T  I  V  P  S  *  *  Q  K  L  Q  K  K  K  N  R  P  V  L  T  R  V  H  *  N  K  F  L  S  A  F  V  Q  P  F  S  K  D  A  K  L  K  I  S  G  *  F  S  *  R  Y  C  V  G  K  E  E  R  R  A  K  R  Y  L  Y  *  A  Q  N  T  E  E  D  D  K  T  D  E  L  V  *  I  D  C  I  F  L  L  L  K  L  F  S  C  V  T  L  *  F  Y  S  L  Q  V  I  F  L  S  V  L  V  L  F  V  S  V  F  Q  E  G  Q  K  L  R  I  L  R  K  G  Q  N  L  *  S  N  F  C  H  S  S  F  </second_frame>
            <third_frame>   G  F  S  S  R  M  *  W  L  S  N  E  P  R  L  H  L  S  A  C  *  K  Q  K  E  L  M  N  G  L  S  R  R  N  *  V  M  L  S  R  T  K  K  K  Q  N  K  P  K  N  P  E  D  L  Y  L  E  T   : G  F  F  H  K  N  W  D  S  Q  F  S  F  S  F  V  D  A  M  M  S  S  M  G  K  A  S  T  F  F  T  S  S  S  K  S  S  L  S  Q  L  L  D  L  A  T  L  A  P  S  S  P  R  N  S  R  N  F  K  K  K  K  I  V  L  Y  *  L  V  Y  T  K  I  N  F  *  V  L  S  C  N  H  F  Q  R  M  P  N  S  K  S  P  D  N  F  L  R  D  T  V  L  V  R  R  S  E  E  Q  R  D  I  Y  I  K  P  R  T  Q  K  K  T  I  K  Q  M  N  *  C  R  *  I  V  F  F  F  Y  *  S  S  L  V  V  *  H  C  N  S  I  A  C  K  S  F  F  F  L  F  L  F  S  L  S  L  S  F  K  R  D  K  S  S  G  Y  C  E  K  D  K  T  Y  N  Q  I  F  V  I  L  A  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0099A03.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="51537" stop="51362"/>
                    <exon start="51248" stop="51089"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>333</number_coding_nucleotides>
                  <number_encoded_amino_acids>111</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>WILFENVMAFQRTKATFIGLLEAKRANEWVVTEKLGDALKNKEKTKQTKKPRGSLFGDRILPQELGFAVFLFFCGCYDVLYGKSQYFLYIFLQVITFTIAGFGYIGTIVPS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0099A03.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="51431" stop="51362"/>
                    <exon start="51248" stop="51049"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>267</number_coding_nucleotides>
                  <number_encoded_amino_acids>89</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VMLSRTKKKQNKPKNPEDLYLETGFFHKNWDSQFSFSFVDAMMSSMGKASTFFTSSSKSSLSQLLDLATLAPSSPRNSRNFKKKKIVLY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 22 chains have been computed
$ 
$ memory statistics:
$ 60512 bytes spliced alignments in total
$ 12 spliced alignments have been stored
$ 5042 bytes was the average size of a spliced alignment
$ 16328 bytes predicted gene locations in total
$ 10 predicted gene locations have been stored
$ 1632 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 26 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-16 08:25:15
-->
