<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-16 11:37:51"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E349240" ref_strand="+" ref_description="SGN-E349240 [cTOS-2-H3]">
      <seq>aaatatgaagtccaagtgagcaaagaagaagtgacgaaagccataaaagaagtgatggacaaagagaaaaaagcaaataataggagaataagagccaaagaagttagagaaatggcaaaaaaagctatagaagaaggtggatcttctcatctcagtttgacactactaatcaaagaagtacaagaattcaactaaaccaattagcttaaaatgattatgcacaagcacgcagtgtactttctttgatttttatgtttttggtagcgcaagcgaaatcagggaagggattagaaagtgaaaaatcaaacccctcacaggtgaaattcagacaaccaatcaactgaactactaagatttcccaattatttttgtacacgaatacgancagacacagttatatattaattttgccagtttcaacttttcaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0113N10.1" temp_strand="+" temp_description="C06SLm0113N10.1  AC219227.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0113N10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="446" stop="1474"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="746" g_stop="1178" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="435" r_length="435" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0113N10.1" gen_strand="+" ref_id="SGN-E349240" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0113N10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E349240" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="746" e_stop="1178"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATATGAAGTCCAAGTGAGCAAAGAAGAAGTGACGAAAGCCATAAAAGAAGTGATGGACAAAGAGAAAAAAGCAAATAATAGGAGAATAAGAGCCAAAGAAGTTAGAGAAATGGCAAAAAAAGCTATAGAAGAAGGTGGATCTTCTCATCTCAGTTTGACACTACTAATCAAAGAAGTACAAGAATTCAACTAAACCAATTAGCTTAAAATGATTATGCACAAGCACGCAGTGTACTTTCTTTGATTTTTATGTTTTTGGTAGCGCAAGCGAAATCAGGGAAGGGATTAGAAAGTGAAGAATCAAA-CCCTCACAGGTGAAATTCAGACAACCAATCAACTGAACTACTAAGATTCCCCAATTATTTTTGTACACGAATACGACAAGACACAGTTATATATTAATTTTGCCAGTTTCAAC-TTTCAACAATGAG</genome_strand>
        <mrna_strand>AAATATGAAGTCCAAGTGAGCAAAGAAGAAGTGACGAAAGCCATAAAAGAAGTGATGGACAAAGAGAAAAAAGCAAATAATAGGAGAATAAGAGCCAAAGAAGTTAGAGAAATGGCAAAAAAAGCTATAGAAGAAGGTGGATCTTCTCATCTCAGTTTGACACTACTAATCAAAGAAGTACAAGAATTCAACTAAACCAATTAGCTTAAAATGATTATGCACAAGCACGCAGTGTACTTTCTTTGATTTTTATGTTTTTGGTAGCGCAAGCGAAATCAGGGAAGGGATTAGAAAGTGAAAAATCAAACCCCTCACAGGTGAAATTCAGACAACCAATCAACTGAACTACTAAGATTTCCCAATTATTTTTGTACACGAATACGANCAGACACAGTTATATATTAATTTTGCCAGTTTCAACTTTTCAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E545312" ref_strand="+" ref_description="SGN-E545312 [TUS-68-B13]">
      <seq>aagaagtacaagaattcaactaaaccaattagcttaaaatgattatgcacaagcacgcagtgtactttctttgatttttatgtttttggtagcgcaagcgaaatcagggaagggattagaaagtgaagaatcaaaccctcacaggtgaaattcagacaaccaatcaactgaactactaagattccccaattatttttgtacacgaatacgacaagacacagttatatattaattttgccagtttcaactttcaacaatgagttttatattaagtataattaagtgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0113N10.1" temp_strand="+" temp_description="C06SLm0113N10.1  AC219227.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0113N10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="618" stop="1503"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="918" g_stop="1202" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="285" r_length="285" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="286" polyA_stop="295"/>
      <MATCH_line gen_id="C06SLm0113N10.1" gen_strand="+" ref_id="SGN-E545312" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>285</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0113N10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E545312" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="918" e_stop="1202"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAGTACAAGAATTCAACTAAACCAATTAGCTTAAAATGATTATGCACAAGCACGCAGTGTACTTTCTTTGATTTTTATGTTTTTGGTAGCGCAAGCGAAATCAGGGAAGGGATTAGAAAGTGAAGAATCAAACCCTCACAGGTGAAATTCAGACAACCAATCAACTGAACTACTAAGATTCCCCAATTATTTTTGTACACGAATACGACAAGACACAGTTATATATTAATTTTGCCAGTTTCAACTTTCAACAATGAGTTTTATATTAAGTATAATTAAGTG</genome_strand>
        <mrna_strand>AAGAAGTACAAGAATTCAACTAAACCAATTAGCTTAAAATGATTATGCACAAGCACGCAGTGTACTTTCTTTGATTTTTATGTTTTTGGTAGCGCAAGCGAAATCAGGGAAGGGATTAGAAAGTGAAGAATCAAACCCTCACAGGTGAAATTCAGACAACCAATCAACTGAACTACTAAGATTCCCCAATTATTTTTGTACACGAATACGACAAGACACAGTTATATATTAATTTTGCCAGTTTCAACTTTCAACAATGAGTTTTATATTAAGTATAATTAAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E545311" ref_strand="+" ref_description="SGN-E545311 [TUS-68-B13](-)">
      <seq>aagaagtacaagaattcaactaaaccaattagcttaaaatgattatgcacaagcacgcagtgtactttctttgatttttatgtttttggtagcgcaagcgaaatcagggaagggattagaaagtgaagaatcaaaccctcacaggtgaaattcagacaaccaatcaactgaactactaagattccccaattatttttgtacacgaatacgacaagacacagttatatattaattttgccagtttcaactttcaacaatgagttttatattaagtataattaaggaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0113N10.1" temp_strand="+" temp_description="C06SLm0113N10.1  AC219227.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0113N10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="618" stop="1503"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="918" g_stop="1199" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="282" r_length="282" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="285" polyA_stop="294"/>
      <MATCH_line gen_id="C06SLm0113N10.1" gen_strand="+" ref_id="SGN-E545311" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>282</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0113N10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E545311" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="918" e_stop="1199"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAGTACAAGAATTCAACTAAACCAATTAGCTTAAAATGATTATGCACAAGCACGCAGTGTACTTTCTTTGATTTTTATGTTTTTGGTAGCGCAAGCGAAATCAGGGAAGGGATTAGAAAGTGAAGAATCAAACCCTCACAGGTGAAATTCAGACAACCAATCAACTGAACTACTAAGATTCCCCAATTATTTTTGTACACGAATACGACAAGACACAGTTATATATTAATTTTGCCAGTTTCAACTTTCAACAATGAGTTTTATATTAAGTATAATTAA</genome_strand>
        <mrna_strand>AAGAAGTACAAGAATTCAACTAAACCAATTAGCTTAAAATGATTATGCACAAGCACGCAGTGTACTTTCTTTGATTTTTATGTTTTTGGTAGCGCAAGCGAAATCAGGGAAGGGATTAGAAAGTGAAGAATCAAACCCTCACAGGTGAAATTCAGACAACCAATCAACTGAACTACTAAGATTCCCCAATTATTTTTGTACACGAATACGACAAGACACAGTTATATATTAATTTTGCCAGTTTCAACTTTCAACAATGAGTTTTATATTAAGTATAATTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E311813" ref_strand="+" ref_description="SGN-E311813 [cLEZ-9-N23]">
      <seq>agaagtacaagaattcaactaaaccaattagcttaaaatgattatgcacaagcacgcagtgtactttctttgatttttatgtttttggtagcgcaagcgaaatcagggaagggattagaaagtgaagaatcaaaccctcacaggtgaaattcagacaaccaatcaactgaactactaagattccccaattatttttgtacacgaatacgacaagacacagttatatattaattttgccagtttcaactttcaacaatgagttttatattaagtataattaagtgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0113N10.1" temp_strand="+" temp_description="C06SLm0113N10.1  AC219227.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0113N10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="619" stop="1503"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="919" g_stop="1202" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="284" r_length="284" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="285" polyA_stop="294"/>
      <MATCH_line gen_id="C06SLm0113N10.1" gen_strand="+" ref_id="SGN-E311813" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>284</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0113N10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E311813" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="919" e_stop="1202"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGTACAAGAATTCAACTAAACCAATTAGCTTAAAATGATTATGCACAAGCACGCAGTGTACTTTCTTTGATTTTTATGTTTTTGGTAGCGCAAGCGAAATCAGGGAAGGGATTAGAAAGTGAAGAATCAAACCCTCACAGGTGAAATTCAGACAACCAATCAACTGAACTACTAAGATTCCCCAATTATTTTTGTACACGAATACGACAAGACACAGTTATATATTAATTTTGCCAGTTTCAACTTTCAACAATGAGTTTTATATTAAGTATAATTAAGTG</genome_strand>
        <mrna_strand>AGAAGTACAAGAATTCAACTAAACCAATTAGCTTAAAATGATTATGCACAAGCACGCAGTGTACTTTCTTTGATTTTTATGTTTTTGGTAGCGCAAGCGAAATCAGGGAAGGGATTAGAAAGTGAAGAATCAAACCCTCACAGGTGAAATTCAGACAACCAATCAACTGAACTACTAAGATTCCCCAATTATTTTTGTACACGAATACGACAAGACACAGTTATATATTAATTTTGCCAGTTTCAACTTTCAACAATGAGTTTTATATTAAGTATAATTAAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E395080" ref_strand="+" ref_description="SGN-E395080 [TUS-35-J21](-)">
      <seq>ttggcaggaatgtggtgcacacgtcagtgtatgacaagaatatagaggaatatgtgtcatcgtgggtacctgatgaaataatcgaggtagaatcggacaaatacaagtactggactcctcatccccaaacaggggtgtttgggccagctactgatcacattataaaatatggttctcaattctccacggtagattctgtgttggaacaaaagacattttttcgtgatttcgaggatctggagaagcctagttatccttaagtttcagaaaacatcacaacagaaaatactactagcagggaaggtgaaagaggtgtttcgtttgttgtgttctatgaatatgtgatatgtttagttaattaatggaagtataatatggagtatgtatagaataaaactagctactctgtgtgggctgcttttaaatggtcatatggtgcaatacatacgatcaaacttttctgtaatatcgtttgtttgtccaaattaaaaaaaaaagttagtattgtatagagaatatgtaatagaacataagattaaaagttggttccaagaagctatattgttacaatgaaatctatatatataataaatctaaatcaagaattgctgatgtggcaatgcctctaagggctgaattttttatttaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0113N10.1" temp_strand="-" temp_description="C06SLm0113N10.1  AC219227.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0113N10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11292" stop="10045"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10992" g_stop="10346" g_length="647"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="647" r_length="647" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="648" polyA_stop="659"/>
      <MATCH_line gen_id="C06SLm0113N10.1" gen_strand="-" ref_id="SGN-E395080" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>647</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0113N10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E395080" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10992" e_stop="10346"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTGCAGGAATGTGGTGCACACGTCAGTGTATGACAAGAATATAGAGGAATATGTGTCATCGTGGGTACCTGATGAAATAATCGAGGTAGAATCGGACAAATACAAGTACTGGACTCCTCATCCCCAAACAGGGGTGTTTGGGCCAGCTACTGATCACATTATAAAATATGGTTCTCAATTCTCCACGGTAGATTCTGTGTTGGAACAAAAGACATTTTTTCGTGATTTCGAGGATCTGGAGAAGCCTAGTTATCCTTAAGTTTCAGAAAACATCACAACAGAAAATACTACTAGCAGGGAAGGTGAAAGAGGTGTTTCGTTTGTTGTGTTCTATGAATATGTGATATGTTTAGTTAATTAATGGAAGTATAATATGGAGTATGTATAGAATAAAACTAGCTACTCTGTGTGGGCTGCTTTTAAATGGTCATATGGTGCAATACATACGATCAAACTTCTCTGTAATATCGTTTGTTTGTCCAAATTAAAAAAAAAAGTTAGTATTGTATAGAGAATATGTAATAGAACATAAGATTAAAAGTTGGTTCCAAGAAGCTATATTGTTACAATGAAATCTATATATATAATAAATCTAAATCAAGAATTGCTGATGTGGCAATGCCTCTAAGGGCTGAATTTTTTATTT</genome_strand>
        <mrna_strand>TTGGCAGGAATGTGGTGCACACGTCAGTGTATGACAAGAATATAGAGGAATATGTGTCATCGTGGGTACCTGATGAAATAATCGAGGTAGAATCGGACAAATACAAGTACTGGACTCCTCATCCCCAAACAGGGGTGTTTGGGCCAGCTACTGATCACATTATAAAATATGGTTCTCAATTCTCCACGGTAGATTCTGTGTTGGAACAAAAGACATTTTTTCGTGATTTCGAGGATCTGGAGAAGCCTAGTTATCCTTAAGTTTCAGAAAACATCACAACAGAAAATACTACTAGCAGGGAAGGTGAAAGAGGTGTTTCGTTTGTTGTGTTCTATGAATATGTGATATGTTTAGTTAATTAATGGAAGTATAATATGGAGTATGTATAGAATAAAACTAGCTACTCTGTGTGGGCTGCTTTTAAATGGTCATATGGTGCAATACATACGATCAAACTTTTCTGTAATATCGTTTGTTTGTCCAAATTAAAAAAAAAAGTTAGTATTGTATAGAGAATATGTAATAGAACATAAGATTAAAAGTTGGTTCCAAGAAGCTATATTGTTACAATGAAATCTATATATATAATAAATCTAAATCAAGAATTGCTGATGTGGCAATGCCTCTAAGGGCTGAATTTTTTATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E392315" ref_strand="+" ref_description="SGN-E392315 [TUS-35-K4](-)">
      <seq>cacaacagaaaatactactagcagggaagaaaaaagaggtgtttcgtttgttgtgttctatgaatatgtgatatgtttagttaattaatggaagtataatatggagtatgtatagaataaaactagctactctgtgtgggctgcttttaaatggtcatatggtgcaatacatacgatcaaacttctctgtaatatcgtttgtttgtccaaattaaaaaaaaaagttagtattgtatagagaatatgtaatagaacataagattaaaagttggttccaagaagctatattgttacaatgaaatctatatatataataaatctaaatcaagaattgctgatgtggcaatgcctctaaggggctgaattttttatttaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0113N10.1" temp_strand="-" temp_description="C06SLm0113N10.1  AC219227.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0113N10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11018" stop="10045"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10718" g_stop="10346" g_length="373"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="374" r_length="374" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="375" polyA_stop="386"/>
      <MATCH_line gen_id="C06SLm0113N10.1" gen_strand="-" ref_id="SGN-E392315" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>373</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0113N10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E392315" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10718" e_stop="10346"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAACAGAAAATACTACTAGCAGGGAAGGTGAAAGAGGTGTTTCGTTTGTTGTGTTCTATGAATATGTGATATGTTTAGTTAATTAATGGAAGTATAATATGGAGTATGTATAGAATAAAACTAGCTACTCTGTGTGGGCTGCTTTTAAATGGTCATATGGTGCAATACATACGATCAAACTTCTCTGTAATATCGTTTGTTTGTCCAAATTAAAAAAAAAAGTTAGTATTGTATAGAGAATATGTAATAGAACATAAGATTAAAAGTTGGTTCCAAGAAGCTATATTGTTACAATGAAATCTATATATATAATAAATCTAAATCAAGAATTGCTGATGTGGCAATGCCTCTAA-GGGCTGAATTTTTTATTT</genome_strand>
        <mrna_strand>CACAACAGAAAATACTACTAGCAGGGAAGAAAAAAGAGGTGTTTCGTTTGTTGTGTTCTATGAATATGTGATATGTTTAGTTAATTAATGGAAGTATAATATGGAGTATGTATAGAATAAAACTAGCTACTCTGTGTGGGCTGCTTTTAAATGGTCATATGGTGCAATACATACGATCAAACTTCTCTGTAATATCGTTTGTTTGTCCAAATTAAAAAAAAAAGTTAGTATTGTATAGAGAATATGTAATAGAACATAAGATTAAAAGTTGGTTCCAAGAAGCTATATTGTTACAATGAAATCTATATATATAATAAATCTAAATCAAGAATTGCTGATGTGGCAATGCCTCTAAGGGGCTGAATTTTTTATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E392631" ref_strand="+" ref_description="SGN-E392631 [TUS-35-N2](-)">
      <seq>gttaattaatgcaactataatagggagtatgcatagaataaaactagctactctgtgtgggctgcttttaaatggtcatatggtgcaatacatacgatcaaacttctctgtaatatcgtttgtttgtccaaattaaaaaaaaaagttagtattgtatagagaatatgtaatagaacataagattaaaagttggttccaagaagctatattgttacaatgaaatctatatatataataaatctaaatacaagaattgctgatgtggcaatgcctctaagggctgaataaggtataaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0113N10.1" temp_strand="-" temp_description="C06SLm0113N10.1  AC219227.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0113N10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="10939" stop="10055"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10639" g_stop="10357" g_length="283"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="284" r_length="284" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="292" polyA_stop="306"/>
      <MATCH_line gen_id="C06SLm0113N10.1" gen_strand="-" ref_id="SGN-E392631" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>283</cumulative_length_of_scored_exons>
        <coverage percentage="0.925" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0113N10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E392631" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10639" e_stop="10357"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTAATTAATGGAAGTATAATATGGAGTATGTATAGAATAAAACTAGCTACTCTGTGTGGGCTGCTTTTAAATGGTCATATGGTGCAATACATACGATCAAACTTCTCTGTAATATCGTTTGTTTGTCCAAATTAAAAAAAAAAGTTAGTATTGTATAGAGAATATGTAATAGAACATAAGATTAAAAGTTGGTTCCAAGAAGCTATATTGTTACAATGAAATCTATATATATAATAAATCTAAAT-CAAGAATTGCTGATGTGGCAATGCCTCTAAGGGCTGA</genome_strand>
        <mrna_strand>GTTAATTAATGCAACTATAATAGGGAGTATGCATAGAATAAAACTAGCTACTCTGTGTGGGCTGCTTTTAAATGGTCATATGGTGCAATACATACGATCAAACTTCTCTGTAATATCGTTTGTTTGTCCAAATTAAAAAAAAAAGTTAGTATTGTATAGAGAATATGTAATAGAACATAAGATTAAAAGTTGGTTCCAAGAAGCTATATTGTTACAATGAAATCTATATATATAATAAATCTAAATACAAGAATTGCTGATGTGGCAATGCCTCTAAGGGCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E722256" ref_strand="+" ref_description="SGN-E722256 [FC16CH05]">
      <seq>gatacttttctcttcctaaattattagctcataatttacttattattactgtttaatagccatttttaaacatcttctttttcagaattgcatttgcatggccactaatttacagaaacgtggactggtaagcttggggaaacgatttgtgaaccagataacttattcaacttctcgaaattctgccaactcatcatctactgcgctctctggcaggaatgtggtgcacacgtcagtgtatgacaagaatatagaggaatatgtgtcatcgtgggtacctgatgaaataatcgaggtagaatcggacaaatacaagtactggactcctcatccccaaacaggggtgtttgggccagctactgatcacattataaaatatggttctcaattctccacggtagattctgtgttggaacaaaagacattttttcgtgatttcgaggatctggagaagcctagttatccttaagtttcagaaaacatcacaacagaaaatactactagcagggaaggtgaaagaggtgtttcgtttgttgtgttctatgaatatgtgatatgtttagttaattaatggaagtataatatggagtatgtatagaataaaactagctactctgtgtgggctgcttttaaatggtcatatggtgcaatacatacgatcaaacttctctgtaatatcgtttgtttgtccaaattaaaaaaaaaagttagtattgtatagagaatatgtaatagaacataagattaaaagttggttccaagaagctatattgttacaatgaaatctatatatataataaatctaaatcaagaattgctgatgtggcaatgcctctaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0113N10.1" temp_strand="-" temp_description="C06SLm0113N10.1  AC219227.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0113N10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11886" stop="10064"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11587" g_stop="11371" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="216" r_length="216" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11370" i_stop="10986" i_length="385">
            <donor d_prob="0.848" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10985" g_stop="10364" g_length="622"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="838" r_length="622" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="839" polyA_stop="850"/>
      <MATCH_line gen_id="C06SLm0113N10.1" gen_strand="-" ref_id="SGN-E722256" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>839</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0113N10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E722256" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11587" e_stop="11371"/>
          <exon e_start="10985" e_stop="10364"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATACTTTTCTCTTCTTATAATTATTAGCTCATAATTTACTTATTATTACTGTTTAATAGCCATTTTTAAACATCTTCTTTTTCAGAATTGCATTTGCATGGCCACTAATTTACAGAAACGTGGACTGGTAAGCTTGGGGAAACGATTTGTGAACCAGATAACTTATTCAACTTCTCGAAATTCTGCCAACTCATCATCTACTGCGCTCTCTGGCAGGTATACTCTGAACCAGCAGTGGCTCAAGCATATTAGTGGCCTAAAACAAAAATAAAACAAGCTTTAAATTTGAATTGTTAATAACTTTAATATAGTTGATTTCTTTTAGTTTTTAATTAATAATATAACCATTCTTATTTTTCATGAGATATAATACTCCAAATATGTCATATTTCTTCTAATCTGAATTCTGAATTCTTATAAACATCAACTTGTACTATTATGGATTAATACTTATTTATACGTATAAAATAAAATTTTGATTATGGTTACTAAGTTCTACCTTACCCGAACCTGTAACTTTCTCTCTAGCTCTGTCCTTGATCAGTTCGAGTTAATTACTTTCAATTTGTTTTTTTTTTAAATCTAATTATGTTATGTGCAGGAATGTGGTGCACACGTCAGTGTATGACAAGAATATAGAGGAATATGTGTCATCGTGGGTACCTGATGAAATAATCGAGGTAGAATCGGACAAATACAAGTACTGGACTCCTCATCCCCAAACAGGGGTGTTTGGGCCAGCTACTGATCACATTATAAAATATGGTTCTCAATTCTCCACGGTAGATTCTGTGTTGGAACAAAAGACATTTTTTCGTGATTTCGAGGATCTGGAGAAGCCTAGTTATCCTTAAGTTTCAGAAAACATCACAACAGAAAATACTACTAGCAGGGAAGGTGAAAGAGGTGTTTCGTTTGTTGTGTTCTATGAATATGTGATATGTTTAGTTAATTAATGGAAGTATAATATGGAGTATGTATAGAATAAAACTAGCTACTCTGTGTGGGCTGCTTTTAAATGGTCATATGGTGCAATACATACGATCAAACTTCTCTGTAATATCGTTTGTTTGTCCAAATTAAAAAAAAAAGTTAGTATTGTATAGAGAATATGTAATAGAACATAAGATTAAAAGTTGGTTCCAAGAAGCTATATTGTTACAATGAAATCTATATATATAATAAATCTAAATCAAGAATTGCTGATGTGGCAATGCCTCTAA</genome_strand>
        <mrna_strand>GATACTTTTCTCTTCCTA-AATTATTAGCTCATAATTTACTTATTATTACTGTTTAATAGCCATTTTTAAACATCTTCTTTTTCAGAATTGCATTTGCATGGCCACTAATTTACAGAAACGTGGACTGGTAAGCTTGGGGAAACGATTTGTGAACCAGATAACTTATTCAACTTCTCGAAATTCTGCCAACTCATCATCTACTGCGCTCTCTGGCAG.................................................................................................................................................................................................................................................................................................................................................................................................GAATGTGGTGCACACGTCAGTGTATGACAAGAATATAGAGGAATATGTGTCATCGTGGGTACCTGATGAAATAATCGAGGTAGAATCGGACAAATACAAGTACTGGACTCCTCATCCCCAAACAGGGGTGTTTGGGCCAGCTACTGATCACATTATAAAATATGGTTCTCAATTCTCCACGGTAGATTCTGTGTTGGAACAAAAGACATTTTTTCGTGATTTCGAGGATCTGGAGAAGCCTAGTTATCCTTAAGTTTCAGAAAACATCACAACAGAAAATACTACTAGCAGGGAAGGTGAAAGAGGTGTTTCGTTTGTTGTGTTCTATGAATATGTGATATGTTTAGTTAATTAATGGAAGTATAATATGGAGTATGTATAGAATAAAACTAGCTACTCTGTGTGGGCTGCTTTTAAATGGTCATATGGTGCAATACATACGATCAAACTTCTCTGTAATATCGTTTGTTTGTCCAAATTAAAAAAAAAAGTTAGTATTGTATAGAGAATATGTAATAGAACATAAGATTAAAAGTTGGTTCCAAGAAGCTATATTGTTACAATGAAATCTATATATATAATAAATCTAAATCAAGAATTGCTGATGTGGCAATGCCTCTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E719337" ref_strand="+" ref_description="SGN-E719337 [FC07CB11]">
      <seq>tggcggccaatcggccgaattgatacttttctcttcctatattattagctcataatttacttattattactgtttaatagccatttttaaacatcttctttttcagaattgcatttgcatggccactaatttacagaaacgtggactggtaagcttggggaaacgatttgtgaaccagataacttattcaacttctcgaaattctgccaactcatcatctactgcgctctctggcaggaatgtggtgcacacgtcagtgtatgacaagaatatagaggaatatgtgtcatcgtgggtacctgatgaaataatcgaggtagaatcggacaaatacaagtactggactcctcatccccaaacaggggtgtttgggccagctactgatcacattataaaatatggttctcaattctccacggtagattctgtgttggaacaaaagacattttttcgtgatttcgaggatctggagaagcctagttatccttaagtttcagaaaacatcacaacagaaaatactactaccagggaaggtgaaagaggtgtttcgtttgttgtgttctatgaatatgtgatatgtttagttaattaatggaagtataatatggagtatgtatagaataaaactagctactctgtgtgggctgcttttaaatggtcatatggtgcaatacatacaatcaaacttctctgtaatatcgtttgtttgtccaaattaaaaaaaaaagttagtattgtatagagaatatgtaatacaacataagattaaaagttggttccgagaagctatattgttacaatgaaatctatatatataataaatctaaatcaagaattgctgatgtggcaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0113N10.1" temp_strand="-" temp_description="C06SLm0113N10.1  AC219227.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0113N10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11902" stop="10071"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11586" g_stop="11371" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="237" r_length="215" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11370" i_stop="10986" i_length="385">
            <donor d_prob="0.848" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10985" g_stop="10371" g_length="615"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="852" r_length="615" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0113N10.1" gen_strand="-" ref_id="SGN-E719337" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>831</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0113N10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E719337" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11586" e_stop="11371"/>
          <exon e_start="10985" e_stop="10371"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATACTTTTCTCTTCTTATAATTATTAGCTCATAATTTACTTATTATTACTGTTTAATAGCCATTTTTAAACATCTTCTTTTTCAGAATTGCATTTGCATGGCCACTAATTTACAGAAACGTGGACTGGTAAGCTTGGGGAAACGATTTGTGAACCAGATAACTTATTCAACTTCTCGAAATTCTGCCAACTCATCATCTACTGCGCTCTCTGGCAGGTATACTCTGAACCAGCAGTGGCTCAAGCATATTAGTGGCCTAAAACAAAAATAAAACAAGCTTTAAATTTGAATTGTTAATAACTTTAATATAGTTGATTTCTTTTAGTTTTTAATTAATAATATAACCATTCTTATTTTTCATGAGATATAATACTCCAAATATGTCATATTTCTTCTAATCTGAATTCTGAATTCTTATAAACATCAACTTGTACTATTATGGATTAATACTTATTTATACGTATAAAATAAAATTTTGATTATGGTTACTAAGTTCTACCTTACCCGAACCTGTAACTTTCTCTCTAGCTCTGTCCTTGATCAGTTCGAGTTAATTACTTTCAATTTGTTTTTTTTTTAAATCTAATTATGTTATGTGCAGGAATGTGGTGCACACGTCAGTGTATGACAAGAATATAGAGGAATATGTGTCATCGTGGGTACCTGATGAAATAATCGAGGTAGAATCGGACAAATACAAGTACTGGACTCCTCATCCCCAAACAGGGGTGTTTGGGCCAGCTACTGATCACATTATAAAATATGGTTCTCAATTCTCCACGGTAGATTCTGTGTTGGAACAAAAGACATTTTTTCGTGATTTCGAGGATCTGGAGAAGCCTAGTTATCCTTAAGTTTCAGAAAACATCACAACAGAAAATACTACTAGCAGGGAAGGTGAAAGAGGTGTTTCGTTTGTTGTGTTCTATGAATATGTGATATGTTTAGTTAATTAATGGAAGTATAATATGGAGTATGTATAGAATAAAACTAGCTACTCTGTGTGGGCTGCTTTTAAATGGTCATATGGTGCAATACATACGATCAAACTTCTCTGTAATATCGTTTGTTTGTCCAAATTAAAAAAAAAAGTTAGTATTGTATAGAGAATATGTAATAGAACATAAGATTAAAAGTTGGTTCCAAGAAGCTATATTGTTACAATGAAATCTATATATATAATAAATCTAAATCAAGAATTGCTGATGTGGCAATG</genome_strand>
        <mrna_strand>ATACTTTTCTCTTCCTAT-ATTATTAGCTCATAATTTACTTATTATTACTGTTTAATAGCCATTTTTAAACATCTTCTTTTTCAGAATTGCATTTGCATGGCCACTAATTTACAGAAACGTGGACTGGTAAGCTTGGGGAAACGATTTGTGAACCAGATAACTTATTCAACTTCTCGAAATTCTGCCAACTCATCATCTACTGCGCTCTCTGGCAG.................................................................................................................................................................................................................................................................................................................................................................................................GAATGTGGTGCACACGTCAGTGTATGACAAGAATATAGAGGAATATGTGTCATCGTGGGTACCTGATGAAATAATCGAGGTAGAATCGGACAAATACAAGTACTGGACTCCTCATCCCCAAACAGGGGTGTTTGGGCCAGCTACTGATCACATTATAAAATATGGTTCTCAATTCTCCACGGTAGATTCTGTGTTGGAACAAAAGACATTTTTTCGTGATTTCGAGGATCTGGAGAAGCCTAGTTATCCTTAAGTTTCAGAAAACATCACAACAGAAAATACTACTACCAGGGAAGGTGAAAGAGGTGTTTCGTTTGTTGTGTTCTATGAATATGTGATATGTTTAGTTAATTAATGGAAGTATAATATGGAGTATGTATAGAATAAAACTAGCTACTCTGTGTGGGCTGCTTTTAAATGGTCATATGGTGCAATACATACAATCAAACTTCTCTGTAATATCGTTTGTTTGTCCAAATTAAAAAAAAAAGTTAGTATTGTATAGAGAATATGTAATACAACATAAGATTAAAAGTTGGTTCCGAGAAGCTATATTGTTACAATGAAATCTATATATATAATAAATCTAAATCAAGAATTGCTGATGTGGCAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E722693" ref_strand="+" ref_description="SGN-E722693 [FC18AB03]">
      <seq>aatcggccgaattgatacttttctcttcttataattattagctcataatttacttattattactgtttaatagccatttttaaacatcttctttttcagaattgcatttgcatggccactaatttacagaaacgtggactggtaagcttggggaaacgatttgtgaaccaaataacttattcaacttctcgaaattctgccaactcatcatctactgcgctctctggcaggaatgtggtgcacacgtcagtgtatgacaagaatatagaggaatatgtgtcatcgtgggtacctgatgaaataatcgaggtagaatcggacaaatacaagtactggactcctcatccccaaacaggggtgtttgggccagctactgatcacattataaaatatggttctcaattctccacggtagattctgtgttggaacaaaagacattttttcgtgatttcgaggatctggagaagcctagttatccttaagtttcagaaaacatcacaacagaaaatactactagcagggaaggtgaaagaggtgtttcgtttgttgtgttctatgaatatgtgatatgtttagttaattaatggaagtataatatggagtatgtatagaataaaactagctactctgtgtgggctgcttttaaatggtcatatggtgcaatacatacgatcaaacttctctgtaatatcgtttgtttgtccaaattaaaaaaaaaagttagtattgtatagagaatatgtaatagaacataagattaaaagttggttccaagaagctatattgttacaatgaaatctatatatataataaatctaaatcaagaattgctgaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0113N10.1" temp_strand="-" temp_description="C06SLm0113N10.1  AC219227.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0113N10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11899" stop="10081"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11600" g_stop="11371" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="230" r_length="230" r_score="0.961"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11370" i_stop="10986" i_length="385">
            <donor d_prob="0.848" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10985" g_stop="10377" g_length="609"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="839" r_length="609" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0113N10.1" gen_strand="-" ref_id="SGN-E722693" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>839</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0113N10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E722693" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11600" e_stop="11371"/>
          <exon e_start="10985" e_stop="10377"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCGCTATAACGTATACTTTTCTCTTCTTATAATTATTAGCTCATAATTTACTTATTATTACTGTTTAATAGCCATTTTTAAACATCTTCTTTTTCAGAATTGCATTTGCATGGCCACTAATTTACAGAAACGTGGACTGGTAAGCTTGGGGAAACGATTTGTGAACCAGATAACTTATTCAACTTCTCGAAATTCTGCCAACTCATCATCTACTGCGCTCTCTGGCAGGTATACTCTGAACCAGCAGTGGCTCAAGCATATTAGTGGCCTAAAACAAAAATAAAACAAGCTTTAAATTTGAATTGTTAATAACTTTAATATAGTTGATTTCTTTTAGTTTTTAATTAATAATATAACCATTCTTATTTTTCATGAGATATAATACTCCAAATATGTCATATTTCTTCTAATCTGAATTCTGAATTCTTATAAACATCAACTTGTACTATTATGGATTAATACTTATTTATACGTATAAAATAAAATTTTGATTATGGTTACTAAGTTCTACCTTACCCGAACCTGTAACTTTCTCTCTAGCTCTGTCCTTGATCAGTTCGAGTTAATTACTTTCAATTTGTTTTTTTTTTAAATCTAATTATGTTATGTGCAGGAATGTGGTGCACACGTCAGTGTATGACAAGAATATAGAGGAATATGTGTCATCGTGGGTACCTGATGAAATAATCGAGGTAGAATCGGACAAATACAAGTACTGGACTCCTCATCCCCAAACAGGGGTGTTTGGGCCAGCTACTGATCACATTATAAAATATGGTTCTCAATTCTCCACGGTAGATTCTGTGTTGGAACAAAAGACATTTTTTCGTGATTTCGAGGATCTGGAGAAGCCTAGTTATCCTTAAGTTTCAGAAAACATCACAACAGAAAATACTACTAGCAGGGAAGGTGAAAGAGGTGTTTCGTTTGTTGTGTTCTATGAATATGTGATATGTTTAGTTAATTAATGGAAGTATAATATGGAGTATGTATAGAATAAAACTAGCTACTCTGTGTGGGCTGCTTTTAAATGGTCATATGGTGCAATACATACGATCAAACTTCTCTGTAATATCGTTTGTTTGTCCAAATTAAAAAAAAAAGTTAGTATTGTATAGAGAATATGTAATAGAACATAAGATTAAAAGTTGGTTCCAAGAAGCTATATTGTTACAATGAAATCTATATATATAATAAATCTAAATCAAGAATTGCTGATGTG</genome_strand>
        <mrna_strand>AATCGGCCGAATTGATACTTTTCTCTTCTTATAATTATTAGCTCATAATTTACTTATTATTACTGTTTAATAGCCATTTTTAAACATCTTCTTTTTCAGAATTGCATTTGCATGGCCACTAATTTACAGAAACGTGGACTGGTAAGCTTGGGGAAACGATTTGTGAACCAAATAACTTATTCAACTTCTCGAAATTCTGCCAACTCATCATCTACTGCGCTCTCTGGCAG.................................................................................................................................................................................................................................................................................................................................................................................................GAATGTGGTGCACACGTCAGTGTATGACAAGAATATAGAGGAATATGTGTCATCGTGGGTACCTGATGAAATAATCGAGGTAGAATCGGACAAATACAAGTACTGGACTCCTCATCCCCAAACAGGGGTGTTTGGGCCAGCTACTGATCACATTATAAAATATGGTTCTCAATTCTCCACGGTAGATTCTGTGTTGGAACAAAAGACATTTTTTCGTGATTTCGAGGATCTGGAGAAGCCTAGTTATCCTTAAGTTTCAGAAAACATCACAACAGAAAATACTACTAGCAGGGAAGGTGAAAGAGGTGTTTCGTTTGTTGTGTTCTATGAATATGTGATATGTTTAGTTAATTAATGGAAGTATAATATGGAGTATGTATAGAATAAAACTAGCTACTCTGTGTGGGCTGCTTTTAAATGGTCATATGGTGCAATACATACGATCAAACTTCTCTGTAATATCGTTTGTTTGTCCAAATTAAAAAAAAAAGTTAGTATTGTATAGAGAATATGTAATAGAACATAAGATTAAAAGTTGGTTCCAAGAAGCTATATTGTTACAATGAAATCTATATATATAATAAATCTAAATCAAGAATTGCTGAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E711908" ref_strand="+" ref_description="SGN-E711908 [FB03BD06]">
      <seq>aatttacttattattactgtttaatagccatttttaaacatcttctttttcagaattgcatttgcatggccactaatttacagaaacgtggactggtaagcttggggaaacgatttgtgaaccagataacttattcaacttctcgaaattctgccaactcatcatctactgcgctctctggcaggaatgtggtgcacacgtcagtgtatgacaagaatatagaggaatatgtgtcatcgtgggtacctgatgaaataatcgaggtagaatcggacaaatacaagtactggactcctcatccccaaacaggggtgtttgggccagctactgatcacattataaaatatggttctcaattctccacggtagattctgtgttggaacaaaagacattttttcgtgatttcgaggatctggagaagcctagttatccttaagtttcagaaaacatcacaacagaaaatactactagcagggaaggtgaaagaggtgtttcgtttgttgtgttctatgaatatgtgatatgtttagttaattaatggaagtataatatggagtatgtatagaataaaactagctactctgtgtgggctgcttttaaatggtcatatggtgcaatacatacgatcaaacttctctgtaatatcgtttgtttgtccaaattaaaaaaaaagttagtattgtatagagaatatgtaatagaacataagattaaaagttggttccaagaagctatattgttacaatgaaatctatatatataataaatctaaatcaacaattgctgatgaaaaaaacaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0113N10.1" temp_strand="-" temp_description="C06SLm0113N10.1  AC219227.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0113N10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11854" stop="10079"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11554" g_stop="11371" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="184" r_length="184" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11370" i_stop="10986" i_length="385">
            <donor d_prob="0.848" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10985" g_stop="10380" g_length="606"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="789" r_length="605" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="791" polyA_stop="805"/>
      <MATCH_line gen_id="C06SLm0113N10.1" gen_strand="-" ref_id="SGN-E711908" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>790</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0113N10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E711908" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11554" e_stop="11371"/>
          <exon e_start="10985" e_stop="10380"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTACTTATTATTACTGTTTAATAGCCATTTTTAAACATCTTCTTTTTCAGAATTGCATTTGCATGGCCACTAATTTACAGAAACGTGGACTGGTAAGCTTGGGGAAACGATTTGTGAACCAGATAACTTATTCAACTTCTCGAAATTCTGCCAACTCATCATCTACTGCGCTCTCTGGCAGGTATACTCTGAACCAGCAGTGGCTCAAGCATATTAGTGGCCTAAAACAAAAATAAAACAAGCTTTAAATTTGAATTGTTAATAACTTTAATATAGTTGATTTCTTTTAGTTTTTAATTAATAATATAACCATTCTTATTTTTCATGAGATATAATACTCCAAATATGTCATATTTCTTCTAATCTGAATTCTGAATTCTTATAAACATCAACTTGTACTATTATGGATTAATACTTATTTATACGTATAAAATAAAATTTTGATTATGGTTACTAAGTTCTACCTTACCCGAACCTGTAACTTTCTCTCTAGCTCTGTCCTTGATCAGTTCGAGTTAATTACTTTCAATTTGTTTTTTTTTTAAATCTAATTATGTTATGTGCAGGAATGTGGTGCACACGTCAGTGTATGACAAGAATATAGAGGAATATGTGTCATCGTGGGTACCTGATGAAATAATCGAGGTAGAATCGGACAAATACAAGTACTGGACTCCTCATCCCCAAACAGGGGTGTTTGGGCCAGCTACTGATCACATTATAAAATATGGTTCTCAATTCTCCACGGTAGATTCTGTGTTGGAACAAAAGACATTTTTTCGTGATTTCGAGGATCTGGAGAAGCCTAGTTATCCTTAAGTTTCAGAAAACATCACAACAGAAAATACTACTAGCAGGGAAGGTGAAAGAGGTGTTTCGTTTGTTGTGTTCTATGAATATGTGATATGTTTAGTTAATTAATGGAAGTATAATATGGAGTATGTATAGAATAAAACTAGCTACTCTGTGTGGGCTGCTTTTAAATGGTCATATGGTGCAATACATACGATCAAACTTCTCTGTAATATCGTTTGTTTGTCCAAATTAAAAAAAAAAGTTAGTATTGTATAGAGAATATGTAATAGAACATAAGATTAAAAGTTGGTTCCAAGAAGCTATATTGTTACAATGAAATCTATATATATAATAAATCTAAATCAAGAATTGCTGAT</genome_strand>
        <mrna_strand>AATTTACTTATTATTACTGTTTAATAGCCATTTTTAAACATCTTCTTTTTCAGAATTGCATTTGCATGGCCACTAATTTACAGAAACGTGGACTGGTAAGCTTGGGGAAACGATTTGTGAACCAGATAACTTATTCAACTTCTCGAAATTCTGCCAACTCATCATCTACTGCGCTCTCTGGCAG.................................................................................................................................................................................................................................................................................................................................................................................................GAATGTGGTGCACACGTCAGTGTATGACAAGAATATAGAGGAATATGTGTCATCGTGGGTACCTGATGAAATAATCGAGGTAGAATCGGACAAATACAAGTACTGGACTCCTCATCCCCAAACAGGGGTGTTTGGGCCAGCTACTGATCACATTATAAAATATGGTTCTCAATTCTCCACGGTAGATTCTGTGTTGGAACAAAAGACATTTTTTCGTGATTTCGAGGATCTGGAGAAGCCTAGTTATCCTTAAGTTTCAGAAAACATCACAACAGAAAATACTACTAGCAGGGAAGGTGAAAGAGGTGTTTCGTTTGTTGTGTTCTATGAATATGTGATATGTTTAGTTAATTAATGGAAGTATAATATGGAGTATGTATAGAATAAAACTAGCTACTCTGTGTGGGCTGCTTTTAAATGGTCATATGGTGCAATACATACGATCAAACTTCTCTGTAATATCGTTTGTTTGTCCAAATT-AAAAAAAAAGTTAGTATTGTATAGAGAATATGTAATAGAACATAAGATTAAAAGTTGGTTCCAAGAAGCTATATTGTTACAATGAAATCTATATATATAATAAATCTAAATCAACAATTGCTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E714170" ref_strand="+" ref_description="SGN-E714170 [FB10CH03]">
      <seq>catttttaaacatcttctttttcagaattgcatttgcatggccactaatttacagaaacgtggactggtaagcttggggaaacgatttgtgaaccagataacttattcaacttctcgaaattctgccaactcatcatctactgcgctctctggcaggaatgtggtgcacacgtcagtgtatgacaagaatatagaggaatatgtgtcatcgtgggtacctgatgaaataatcgaggtagaatcggacaaatacaagtactggactcctcatccccaaacaggggtgtttgggccagctactgatcacattataaaatatggttctcaattctccacggtagattctgtgttggaacaaaagacattttttcgtgatttcgaggatctggagaagcctagttatccttaagtttcagaaaacatcacaacagaaaatactactagcagggaaggtgaaagaggtgtttcgtttgttgtgttctatgaatatgtgatatgtttagttaattaatggaagtataatatggagtatgtatagaataaaactagctactctgtgtgggctgcttttaaatggtcatatggtgcaatacatacgatcaaacttctctgtaatatcgtttgtttgtccaaattaaaaaaaaaagttagtattgtatagagaatatgtaatagaacataagattanaagttggttccaagaagctatattgttacaatgaaatctatatatataataaatctaaatcaagaattgctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0113N10.1" temp_strand="-" temp_description="C06SLm0113N10.1  AC219227.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0113N10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11826" stop="10081"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11526" g_stop="11371" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="156" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11370" i_stop="10986" i_length="385">
            <donor d_prob="0.848" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10985" g_stop="10381" g_length="605"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="761" r_length="605" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0113N10.1" gen_strand="-" ref_id="SGN-E714170" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>761</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0113N10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E714170" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11526" e_stop="11371"/>
          <exon e_start="10985" e_stop="10381"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTTTTAAACATCTTCTTTTTCAGAATTGCATTTGCATGGCCACTAATTTACAGAAACGTGGACTGGTAAGCTTGGGGAAACGATTTGTGAACCAGATAACTTATTCAACTTCTCGAAATTCTGCCAACTCATCATCTACTGCGCTCTCTGGCAGGTATACTCTGAACCAGCAGTGGCTCAAGCATATTAGTGGCCTAAAACAAAAATAAAACAAGCTTTAAATTTGAATTGTTAATAACTTTAATATAGTTGATTTCTTTTAGTTTTTAATTAATAATATAACCATTCTTATTTTTCATGAGATATAATACTCCAAATATGTCATATTTCTTCTAATCTGAATTCTGAATTCTTATAAACATCAACTTGTACTATTATGGATTAATACTTATTTATACGTATAAAATAAAATTTTGATTATGGTTACTAAGTTCTACCTTACCCGAACCTGTAACTTTCTCTCTAGCTCTGTCCTTGATCAGTTCGAGTTAATTACTTTCAATTTGTTTTTTTTTTAAATCTAATTATGTTATGTGCAGGAATGTGGTGCACACGTCAGTGTATGACAAGAATATAGAGGAATATGTGTCATCGTGGGTACCTGATGAAATAATCGAGGTAGAATCGGACAAATACAAGTACTGGACTCCTCATCCCCAAACAGGGGTGTTTGGGCCAGCTACTGATCACATTATAAAATATGGTTCTCAATTCTCCACGGTAGATTCTGTGTTGGAACAAAAGACATTTTTTCGTGATTTCGAGGATCTGGAGAAGCCTAGTTATCCTTAAGTTTCAGAAAACATCACAACAGAAAATACTACTAGCAGGGAAGGTGAAAGAGGTGTTTCGTTTGTTGTGTTCTATGAATATGTGATATGTTTAGTTAATTAATGGAAGTATAATATGGAGTATGTATAGAATAAAACTAGCTACTCTGTGTGGGCTGCTTTTAAATGGTCATATGGTGCAATACATACGATCAAACTTCTCTGTAATATCGTTTGTTTGTCCAAATTAAAAAAAAAAGTTAGTATTGTATAGAGAATATGTAATAGAACATAAGATTAAAAGTTGGTTCCAAGAAGCTATATTGTTACAATGAAATCTATATATATAATAAATCTAAATCAAGAATTGCTGA</genome_strand>
        <mrna_strand>CATTTTTAAACATCTTCTTTTTCAGAATTGCATTTGCATGGCCACTAATTTACAGAAACGTGGACTGGTAAGCTTGGGGAAACGATTTGTGAACCAGATAACTTATTCAACTTCTCGAAATTCTGCCAACTCATCATCTACTGCGCTCTCTGGCAG.................................................................................................................................................................................................................................................................................................................................................................................................GAATGTGGTGCACACGTCAGTGTATGACAAGAATATAGAGGAATATGTGTCATCGTGGGTACCTGATGAAATAATCGAGGTAGAATCGGACAAATACAAGTACTGGACTCCTCATCCCCAAACAGGGGTGTTTGGGCCAGCTACTGATCACATTATAAAATATGGTTCTCAATTCTCCACGGTAGATTCTGTGTTGGAACAAAAGACATTTTTTCGTGATTTCGAGGATCTGGAGAAGCCTAGTTATCCTTAAGTTTCAGAAAACATCACAACAGAAAATACTACTAGCAGGGAAGGTGAAAGAGGTGTTTCGTTTGTTGTGTTCTATGAATATGTGATATGTTTAGTTAATTAATGGAAGTATAATATGGAGTATGTATAGAATAAAACTAGCTACTCTGTGTGGGCTGCTTTTAAATGGTCATATGGTGCAATACATACGATCAAACTTCTCTGTAATATCGTTTGTTTGTCCAAATTAAAAAAAAAAGTTAGTATTGTATAGAGAATATGTAATAGAACATAAGATTANAAGTTGGTTCCAAGAAGCTATATTGTTACAATGAAATCTATATATATAATAAATCTAAATCAAGAATTGCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E714971" ref_strand="+" ref_description="SGN-E714971 [FB12DH04]">
      <seq>tattattactgtttaatagccatttttaaacatcttctttttcagaattgcatttgcatggccactaatttacagaaacgtggactggtaagcttggggaaacgatttgtgaaccagataacttattcaacttctcgaaattctgccaactcatcatctactgcgctctctggcaggaatgtggtgcacacgtcagtgtatgacaagaatatagaggaatatgtgtcatcgtgggtacctgatgaaataatcgaggtagaatcggacaaatacaagtactggactcctcatccccaaacaggggtgtttgggccagctactgatcacattataaaatatggttctcaattctccacggtagattctgtgttggaacaaaagacattttttcgtgatttcgaggatctggagaagcctagttatccttaagtttcagaaaacatcacaacagaaaatactactagcagggaaggtgaaagaggtgtttcgtttgttgtgttctatgaatatgtgatatgtttagttaattaatggaagtataatatggagtatgtatagaataaaactagctactctgtgtgggctgcttttaaatggtcatatggtgcaatacatacgatcaaacttctctgtaatatcgtttgtttgtccaaattaaaaaaaaaagttagtattgtatagagaatatgtaatagaacataagattaaaagttggttccaagaagctatattgttacaatgaaatctatatatataataaatctaaatcaagaattgctgaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0113N10.1" temp_strand="-" temp_description="C06SLm0113N10.1  AC219227.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0113N10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11846" stop="10081"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11546" g_stop="11371" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="176" r_length="176" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11370" i_stop="10986" i_length="385">
            <donor d_prob="0.848" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10985" g_stop="10382" g_length="604"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="780" r_length="604" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="781" polyA_stop="791"/>
      <MATCH_line gen_id="C06SLm0113N10.1" gen_strand="-" ref_id="SGN-E714971" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>780</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0113N10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E714971" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11546" e_stop="11371"/>
          <exon e_start="10985" e_stop="10382"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTATTACTGTTTAATAGCCATTTTTAAACATCTTCTTTTTCAGAATTGCATTTGCATGGCCACTAATTTACAGAAACGTGGACTGGTAAGCTTGGGGAAACGATTTGTGAACCAGATAACTTATTCAACTTCTCGAAATTCTGCCAACTCATCATCTACTGCGCTCTCTGGCAGGTATACTCTGAACCAGCAGTGGCTCAAGCATATTAGTGGCCTAAAACAAAAATAAAACAAGCTTTAAATTTGAATTGTTAATAACTTTAATATAGTTGATTTCTTTTAGTTTTTAATTAATAATATAACCATTCTTATTTTTCATGAGATATAATACTCCAAATATGTCATATTTCTTCTAATCTGAATTCTGAATTCTTATAAACATCAACTTGTACTATTATGGATTAATACTTATTTATACGTATAAAATAAAATTTTGATTATGGTTACTAAGTTCTACCTTACCCGAACCTGTAACTTTCTCTCTAGCTCTGTCCTTGATCAGTTCGAGTTAATTACTTTCAATTTGTTTTTTTTTTAAATCTAATTATGTTATGTGCAGGAATGTGGTGCACACGTCAGTGTATGACAAGAATATAGAGGAATATGTGTCATCGTGGGTACCTGATGAAATAATCGAGGTAGAATCGGACAAATACAAGTACTGGACTCCTCATCCCCAAACAGGGGTGTTTGGGCCAGCTACTGATCACATTATAAAATATGGTTCTCAATTCTCCACGGTAGATTCTGTGTTGGAACAAAAGACATTTTTTCGTGATTTCGAGGATCTGGAGAAGCCTAGTTATCCTTAAGTTTCAGAAAACATCACAACAGAAAATACTACTAGCAGGGAAGGTGAAAGAGGTGTTTCGTTTGTTGTGTTCTATGAATATGTGATATGTTTAGTTAATTAATGGAAGTATAATATGGAGTATGTATAGAATAAAACTAGCTACTCTGTGTGGGCTGCTTTTAAATGGTCATATGGTGCAATACATACGATCAAACTTCTCTGTAATATCGTTTGTTTGTCCAAATTAAAAAAAAAAGTTAGTATTGTATAGAGAATATGTAATAGAACATAAGATTAAAAGTTGGTTCCAAGAAGCTATATTGTTACAATGAAATCTATATATATAATAAATCTAAATCAAGAATTGCTG</genome_strand>
        <mrna_strand>TATTATTACTGTTTAATAGCCATTTTTAAACATCTTCTTTTTCAGAATTGCATTTGCATGGCCACTAATTTACAGAAACGTGGACTGGTAAGCTTGGGGAAACGATTTGTGAACCAGATAACTTATTCAACTTCTCGAAATTCTGCCAACTCATCATCTACTGCGCTCTCTGGCAG.................................................................................................................................................................................................................................................................................................................................................................................................GAATGTGGTGCACACGTCAGTGTATGACAAGAATATAGAGGAATATGTGTCATCGTGGGTACCTGATGAAATAATCGAGGTAGAATCGGACAAATACAAGTACTGGACTCCTCATCCCCAAACAGGGGTGTTTGGGCCAGCTACTGATCACATTATAAAATATGGTTCTCAATTCTCCACGGTAGATTCTGTGTTGGAACAAAAGACATTTTTTCGTGATTTCGAGGATCTGGAGAAGCCTAGTTATCCTTAAGTTTCAGAAAACATCACAACAGAAAATACTACTAGCAGGGAAGGTGAAAGAGGTGTTTCGTTTGTTGTGTTCTATGAATATGTGATATGTTTAGTTAATTAATGGAAGTATAATATGGAGTATGTATAGAATAAAACTAGCTACTCTGTGTGGGCTGCTTTTAAATGGTCATATGGTGCAATACATACGATCAAACTTCTCTGTAATATCGTTTGTTTGTCCAAATTAAAAAAAAAAGTTAGTATTGTATAGAGAATATGTAATAGAACATAAGATTAAAAGTTGGTTCCAAGAAGCTATATTGTTACAATGAAATCTATATATATAATAAATCTAAATCAAGAATTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E717788" ref_strand="+" ref_description="SGN-E717788 [FC02DA04]">
      <seq>gggcgattggcggccaatcggccgaattgatacttttctcttctcaaattattagctcataatttacttattattactgtttaatagccatttttaaacatcttctttttcagaattgcatttgcatggccactaatttacagaaacgtggactggtaagcttggggaaacgatttgtgaaccagataacttattcaacttctcgaaattctgccaactcatcatctactgcgctctctggcaggaatgtggtgcacacgtcagtgtatgacaagaatatagaggaatatgtgtcatcgtgggtacctgatgaaataatcgaggtagaatcggacaaatacaagtactggactcctcatccccaaacaggggtgtttgggccagctactgatcacattataaaatatggttctcaattctccacggtagattctgtgttggaacaaaagacattttttcgtgatttcgaggatctggagaagcctagttatccttaagtttcagaaaacatcacaacagaaaatactactagcagggaaggtgaaagaggtgtttcgtttgttgtgttctatgaatatgtgatatgtttagttaattaatggaagtataatatggagtatgtatagaataaaactagctactctgtgtgggctgcttttaaatggtcatatggtgcaatacatacgatcaaacttctctgtaatatcgtttgtttgtccaaattaaaaaaaaaagttagtattgtatagagaatatgtaatagaacataagattaaaagttggttccaagaagctatattgttacaatgaaatctatatatataataaatctaaatcaagaattgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0113N10.1" temp_strand="-" temp_description="C06SLm0113N10.1  AC219227.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0113N10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11902" stop="10084"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11586" g_stop="11371" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="244" r_length="215" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11370" i_stop="10986" i_length="385">
            <donor d_prob="0.848" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10985" g_stop="10384" g_length="602"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="846" r_length="602" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0113N10.1" gen_strand="-" ref_id="SGN-E717788" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>818</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0113N10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E717788" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11586" e_stop="11371"/>
          <exon e_start="10985" e_stop="10384"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATACTTTTCTCTTCTTATAATTATTAGCTCATAATTTACTTATTATTACTGTTTAATAGCCATTTTTAAACATCTTCTTTTTCAGAATTGCATTTGCATGGCCACTAATTTACAGAAACGTGGACTGGTAAGCTTGGGGAAACGATTTGTGAACCAGATAACTTATTCAACTTCTCGAAATTCTGCCAACTCATCATCTACTGCGCTCTCTGGCAGGTATACTCTGAACCAGCAGTGGCTCAAGCATATTAGTGGCCTAAAACAAAAATAAAACAAGCTTTAAATTTGAATTGTTAATAACTTTAATATAGTTGATTTCTTTTAGTTTTTAATTAATAATATAACCATTCTTATTTTTCATGAGATATAATACTCCAAATATGTCATATTTCTTCTAATCTGAATTCTGAATTCTTATAAACATCAACTTGTACTATTATGGATTAATACTTATTTATACGTATAAAATAAAATTTTGATTATGGTTACTAAGTTCTACCTTACCCGAACCTGTAACTTTCTCTCTAGCTCTGTCCTTGATCAGTTCGAGTTAATTACTTTCAATTTGTTTTTTTTTTAAATCTAATTATGTTATGTGCAGGAATGTGGTGCACACGTCAGTGTATGACAAGAATATAGAGGAATATGTGTCATCGTGGGTACCTGATGAAATAATCGAGGTAGAATCGGACAAATACAAGTACTGGACTCCTCATCCCCAAACAGGGGTGTTTGGGCCAGCTACTGATCACATTATAAAATATGGTTCTCAATTCTCCACGGTAGATTCTGTGTTGGAACAAAAGACATTTTTTCGTGATTTCGAGGATCTGGAGAAGCCTAGTTATCCTTAAGTTTCAGAAAACATCACAACAGAAAATACTACTAGCAGGGAAGGTGAAAGAGGTGTTTCGTTTGTTGTGTTCTATGAATATGTGATATGTTTAGTTAATTAATGGAAGTATAATATGGAGTATGTATAGAATAAAACTAGCTACTCTGTGTGGGCTGCTTTTAAATGGTCATATGGTGCAATACATACGATCAAACTTCTCTGTAATATCGTTTGTTTGTCCAAATTAAAAAAAAAAGTTAGTATTGTATAGAGAATATGTAATAGAACATAAGATTAAAAGTTGGTTCCAAGAAGCTATATTGTTACAATGAAATCTATATATATAATAAATCTAAATCAAGAATTGC</genome_strand>
        <mrna_strand>ATACTTTTCTCTTCTCA-AATTATTAGCTCATAATTTACTTATTATTACTGTTTAATAGCCATTTTTAAACATCTTCTTTTTCAGAATTGCATTTGCATGGCCACTAATTTACAGAAACGTGGACTGGTAAGCTTGGGGAAACGATTTGTGAACCAGATAACTTATTCAACTTCTCGAAATTCTGCCAACTCATCATCTACTGCGCTCTCTGGCAG.................................................................................................................................................................................................................................................................................................................................................................................................GAATGTGGTGCACACGTCAGTGTATGACAAGAATATAGAGGAATATGTGTCATCGTGGGTACCTGATGAAATAATCGAGGTAGAATCGGACAAATACAAGTACTGGACTCCTCATCCCCAAACAGGGGTGTTTGGGCCAGCTACTGATCACATTATAAAATATGGTTCTCAATTCTCCACGGTAGATTCTGTGTTGGAACAAAAGACATTTTTTCGTGATTTCGAGGATCTGGAGAAGCCTAGTTATCCTTAAGTTTCAGAAAACATCACAACAGAAAATACTACTAGCAGGGAAGGTGAAAGAGGTGTTTCGTTTGTTGTGTTCTATGAATATGTGATATGTTTAGTTAATTAATGGAAGTATAATATGGAGTATGTATAGAATAAAACTAGCTACTCTGTGTGGGCTGCTTTTAAATGGTCATATGGTGCAATACATACGATCAAACTTCTCTGTAATATCGTTTGTTTGTCCAAATTAAAAAAAAAAGTTAGTATTGTATAGAGAATATGTAATAGAACATAAGATTAAAAGTTGGTTCCAAGAAGCTATATTGTTACAATGAAATCTATATATATAATAAATCTAAATCAAGAATTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E724482" ref_strand="+" ref_description="SGN-E724482 [FC24BA01]">
      <seq>cgattggcggccaatcggccgaattcccatggggatccgacgatacttttctcttcttataattattagctcataatttactcattattactgtttaatagccatttttaaacatcttctttttcagaattgcatttgcatggccactaatttacagaaacgtggactggtaagcttggggaaacgatttgtgaaccagataacttattcaacttctcgaaattctgccaactcatcatctactgcgctctctggcaggaatgtggtgcacacgtcagtgtatgacaagaatatagaggaatatgtgtcatcgtgggtacctgatgaaataatcgaggtagaatcggacaaatacaagtactggactcctcatccccaaacaggggtgtttgggccagctactgatcacattataaaatatggttctcaattctccacggtagattctgtgttggaacaaaagacattttttcgtgatttcgaggatctggagaagcctagttatccttaagtttcagaaaacatcacaacagaaaatactactagcagggaaggtgaaagaggtgtttcgtttgttgtgttctatgaatatgtgatatgtttagttaattaatggaagtataatatggagtatgtatagaataaaactagctactctgtgtgggctgcttttaaatggtcatatggtgcaatacatacgatcaaacttctctgtaatatcgtttgtttgtccaaattaaaaaaaaaagttagtattgtatagagaatatgtaatagaacataagattaaaagttggttccaagaagctatattgttacaatgaaatctatatatataataaatctaaatcaagaattgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0113N10.1" temp_strand="-" temp_description="C06SLm0113N10.1  AC219227.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0113N10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11890" stop="10084"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11586" g_stop="11371" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="258" r_length="216" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11370" i_stop="10986" i_length="385">
            <donor d_prob="0.848" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10985" g_stop="10384" g_length="602"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="860" r_length="602" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0113N10.1" gen_strand="-" ref_id="SGN-E724482" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>818</cumulative_length_of_scored_exons>
        <coverage percentage="0.951" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0113N10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E724482" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11586" e_stop="11371"/>
          <exon e_start="10985" e_stop="10384"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATACTTTTCTCTTCTTATAATTATTAGCTCATAATTTACTTATTATTACTGTTTAATAGCCATTTTTAAACATCTTCTTTTTCAGAATTGCATTTGCATGGCCACTAATTTACAGAAACGTGGACTGGTAAGCTTGGGGAAACGATTTGTGAACCAGATAACTTATTCAACTTCTCGAAATTCTGCCAACTCATCATCTACTGCGCTCTCTGGCAGGTATACTCTGAACCAGCAGTGGCTCAAGCATATTAGTGGCCTAAAACAAAAATAAAACAAGCTTTAAATTTGAATTGTTAATAACTTTAATATAGTTGATTTCTTTTAGTTTTTAATTAATAATATAACCATTCTTATTTTTCATGAGATATAATACTCCAAATATGTCATATTTCTTCTAATCTGAATTCTGAATTCTTATAAACATCAACTTGTACTATTATGGATTAATACTTATTTATACGTATAAAATAAAATTTTGATTATGGTTACTAAGTTCTACCTTACCCGAACCTGTAACTTTCTCTCTAGCTCTGTCCTTGATCAGTTCGAGTTAATTACTTTCAATTTGTTTTTTTTTTAAATCTAATTATGTTATGTGCAGGAATGTGGTGCACACGTCAGTGTATGACAAGAATATAGAGGAATATGTGTCATCGTGGGTACCTGATGAAATAATCGAGGTAGAATCGGACAAATACAAGTACTGGACTCCTCATCCCCAAACAGGGGTGTTTGGGCCAGCTACTGATCACATTATAAAATATGGTTCTCAATTCTCCACGGTAGATTCTGTGTTGGAACAAAAGACATTTTTTCGTGATTTCGAGGATCTGGAGAAGCCTAGTTATCCTTAAGTTTCAGAAAACATCACAACAGAAAATACTACTAGCAGGGAAGGTGAAAGAGGTGTTTCGTTTGTTGTGTTCTATGAATATGTGATATGTTTAGTTAATTAATGGAAGTATAATATGGAGTATGTATAGAATAAAACTAGCTACTCTGTGTGGGCTGCTTTTAAATGGTCATATGGTGCAATACATACGATCAAACTTCTCTGTAATATCGTTTGTTTGTCCAAATTAAAAAAAAAAGTTAGTATTGTATAGAGAATATGTAATAGAACATAAGATTAAAAGTTGGTTCCAAGAAGCTATATTGTTACAATGAAATCTATATATATAATAAATCTAAATCAAGAATTGC</genome_strand>
        <mrna_strand>ATACTTTTCTCTTCTTATAATTATTAGCTCATAATTTACTCATTATTACTGTTTAATAGCCATTTTTAAACATCTTCTTTTTCAGAATTGCATTTGCATGGCCACTAATTTACAGAAACGTGGACTGGTAAGCTTGGGGAAACGATTTGTGAACCAGATAACTTATTCAACTTCTCGAAATTCTGCCAACTCATCATCTACTGCGCTCTCTGGCAG.................................................................................................................................................................................................................................................................................................................................................................................................GAATGTGGTGCACACGTCAGTGTATGACAAGAATATAGAGGAATATGTGTCATCGTGGGTACCTGATGAAATAATCGAGGTAGAATCGGACAAATACAAGTACTGGACTCCTCATCCCCAAACAGGGGTGTTTGGGCCAGCTACTGATCACATTATAAAATATGGTTCTCAATTCTCCACGGTAGATTCTGTGTTGGAACAAAAGACATTTTTTCGTGATTTCGAGGATCTGGAGAAGCCTAGTTATCCTTAAGTTTCAGAAAACATCACAACAGAAAATACTACTAGCAGGGAAGGTGAAAGAGGTGTTTCGTTTGTTGTGTTCTATGAATATGTGATATGTTTAGTTAATTAATGGAAGTATAATATGGAGTATGTATAGAATAAAACTAGCTACTCTGTGTGGGCTGCTTTTAAATGGTCATATGGTGCAATACATACGATCAAACTTCTCTGTAATATCGTTTGTTTGTCCAAATTAAAAAAAAAAGTTAGTATTGTATAGAGAATATGTAATAGAACATAAGATTAAAAGTTGGTTCCAAGAAGCTATATTGTTACAATGAAATCTATATATATAATAAATCTAAATCAAGAATTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E721841" ref_strand="+" ref_description="SGN-E721841 [FC15BH01]">
      <seq>tcataatttacttattattactgtttaatacccatttttaaacatcttctttttcagaattgcatttgcatggccactaatttacagaaacgtggactggtaagcttggggaaacgatttgtgaaccagataacttattcaacttctcgaaattctgccaactcatcatctactgcgctctctggcaggaatgtggtgcacacgtcagtgtatgacaagaatatagaggaatatgtgtcatcgtgggtacctgatgaaataatcgaggtagaatcggacaaatacaagtactggactcctcatccccaaacaggggtgtttgggccagctactgatcacattataaaatatggttctcaattctccacggtagattctgtgttggaacaaaagacattttttcgtgatttcgaggatctggagaagcctagttatccttaagtttcagaaaacatcacaacagaaaatactactagcagggaaggtgaaagaggtgtttcgtttgttgtgttctatgaatatgtgatatgtttagttaattaatggaagtataatatggagtatgtatagaataaaactagctactctgtgtgggctgcttttaaatggtcatatggtgcaatacatacgatcaaacttctctgtaatatcgtttgtttgtccaaattaaaaaaaaaagttagtattgtatagagaatatgtaatagaacataagattaaaagttggttccaagaagctatattgttacaatgaaatctatatatataataaatctaaatcaagaattgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0113N10.1" temp_strand="-" temp_description="C06SLm0113N10.1  AC219227.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0113N10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11858" stop="10084"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11558" g_stop="11371" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="188" r_length="188" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11370" i_stop="10986" i_length="385">
            <donor d_prob="0.848" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10985" g_stop="10384" g_length="602"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="790" r_length="602" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0113N10.1" gen_strand="-" ref_id="SGN-E721841" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>790</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0113N10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E721841" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11558" e_stop="11371"/>
          <exon e_start="10985" e_stop="10384"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATAATTTACTTATTATTACTGTTTAATAGCCATTTTTAAACATCTTCTTTTTCAGAATTGCATTTGCATGGCCACTAATTTACAGAAACGTGGACTGGTAAGCTTGGGGAAACGATTTGTGAACCAGATAACTTATTCAACTTCTCGAAATTCTGCCAACTCATCATCTACTGCGCTCTCTGGCAGGTATACTCTGAACCAGCAGTGGCTCAAGCATATTAGTGGCCTAAAACAAAAATAAAACAAGCTTTAAATTTGAATTGTTAATAACTTTAATATAGTTGATTTCTTTTAGTTTTTAATTAATAATATAACCATTCTTATTTTTCATGAGATATAATACTCCAAATATGTCATATTTCTTCTAATCTGAATTCTGAATTCTTATAAACATCAACTTGTACTATTATGGATTAATACTTATTTATACGTATAAAATAAAATTTTGATTATGGTTACTAAGTTCTACCTTACCCGAACCTGTAACTTTCTCTCTAGCTCTGTCCTTGATCAGTTCGAGTTAATTACTTTCAATTTGTTTTTTTTTTAAATCTAATTATGTTATGTGCAGGAATGTGGTGCACACGTCAGTGTATGACAAGAATATAGAGGAATATGTGTCATCGTGGGTACCTGATGAAATAATCGAGGTAGAATCGGACAAATACAAGTACTGGACTCCTCATCCCCAAACAGGGGTGTTTGGGCCAGCTACTGATCACATTATAAAATATGGTTCTCAATTCTCCACGGTAGATTCTGTGTTGGAACAAAAGACATTTTTTCGTGATTTCGAGGATCTGGAGAAGCCTAGTTATCCTTAAGTTTCAGAAAACATCACAACAGAAAATACTACTAGCAGGGAAGGTGAAAGAGGTGTTTCGTTTGTTGTGTTCTATGAATATGTGATATGTTTAGTTAATTAATGGAAGTATAATATGGAGTATGTATAGAATAAAACTAGCTACTCTGTGTGGGCTGCTTTTAAATGGTCATATGGTGCAATACATACGATCAAACTTCTCTGTAATATCGTTTGTTTGTCCAAATTAAAAAAAAAAGTTAGTATTGTATAGAGAATATGTAATAGAACATAAGATTAAAAGTTGGTTCCAAGAAGCTATATTGTTACAATGAAATCTATATATATAATAAATCTAAATCAAGAATTGC</genome_strand>
        <mrna_strand>TCATAATTTACTTATTATTACTGTTTAATACCCATTTTTAAACATCTTCTTTTTCAGAATTGCATTTGCATGGCCACTAATTTACAGAAACGTGGACTGGTAAGCTTGGGGAAACGATTTGTGAACCAGATAACTTATTCAACTTCTCGAAATTCTGCCAACTCATCATCTACTGCGCTCTCTGGCAG.................................................................................................................................................................................................................................................................................................................................................................................................GAATGTGGTGCACACGTCAGTGTATGACAAGAATATAGAGGAATATGTGTCATCGTGGGTACCTGATGAAATAATCGAGGTAGAATCGGACAAATACAAGTACTGGACTCCTCATCCCCAAACAGGGGTGTTTGGGCCAGCTACTGATCACATTATAAAATATGGTTCTCAATTCTCCACGGTAGATTCTGTGTTGGAACAAAAGACATTTTTTCGTGATTTCGAGGATCTGGAGAAGCCTAGTTATCCTTAAGTTTCAGAAAACATCACAACAGAAAATACTACTAGCAGGGAAGGTGAAAGAGGTGTTTCGTTTGTTGTGTTCTATGAATATGTGATATGTTTAGTTAATTAATGGAAGTATAATATGGAGTATGTATAGAATAAAACTAGCTACTCTGTGTGGGCTGCTTTTAAATGGTCATATGGTGCAATACATACGATCAAACTTCTCTGTAATATCGTTTGTTTGTCCAAATTAAAAAAAAAAGTTAGTATTGTATAGAGAATATGTAATAGAACATAAGATTAAAAGTTGGTTCCAAGAAGCTATATTGTTACAATGAAATCTATATATATAATAAATCTAAATCAAGAATTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E716847" ref_strand="+" ref_description="SGN-E716847 [FB18AH01]">
      <seq>gatcgctataacaattgcatttgcatggccactaatttacagaaacgtggactggtaagcttggggaaacgatttgtgaaccagataacttattcaacttctcgaaattctgccaactcatcatctactgcgctctctggcaggaatgtggtgcacacgtcagtgtatgacaagaatatagaggaatatgtgtcatcgtgggtacctgatgaaataatcgaggtagaatcggacaaatacaagtactggactcctcatccccaaacaggggtgtttgggccagctactgatcacattataaaatatggttctcaattctccacggtagattctgtgttggaacaaaagacattttttcgtgatttcgaggatctggagaagcctagttatccttaagtttcagaaaacatcacaacagaaaatactactagcagggaaggtgaaagaggtgtttcgtttgttgtgttctatgaatatgtgatatgtttagttaattaatggaagtataatatggagtatgtatagaataaaactagctactctgtgtgggctgcttttaaatggtcatatggtgcaatacatacgatcaaacttctctgtaatatcgtttgtttgtccaaattaaaaaaaaaagttagtattgtatagagaatatgtaatagaacataagattaaaagttggttccaagaagctatattgttacaatgaaatctatatatataataaatctaaatcaagaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0113N10.1" temp_strand="-" temp_description="C06SLm0113N10.1  AC219227.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0113N10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11811" stop="10088"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11600" g_stop="11589" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="12" r_length="12" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11588" i_stop="11502" i_length="87">
            <donor d_prob="0.900" d_score="0.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11501" g_stop="11371" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="143" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11370" i_stop="10986" i_length="385">
            <donor d_prob="0.848" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="10985" g_stop="10389" g_length="597"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="740" r_length="597" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0113N10.1" gen_strand="-" ref_id="SGN-E716847" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>740</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0113N10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E716847" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11600" e_stop="11589"/>
          <exon e_start="11501" e_stop="11371"/>
          <exon e_start="10985" e_stop="10389"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCGCTATAACGTATACTTTTCTCTTCTTATAATTATTAGCTCATAATTTACTTATTATTACTGTTTAATAGCCATTTTTAAACATCTTCTTTTTCAGAATTGCATTTGCATGGCCACTAATTTACAGAAACGTGGACTGGTAAGCTTGGGGAAACGATTTGTGAACCAGATAACTTATTCAACTTCTCGAAATTCTGCCAACTCATCATCTACTGCGCTCTCTGGCAGGTATACTCTGAACCAGCAGTGGCTCAAGCATATTAGTGGCCTAAAACAAAAATAAAACAAGCTTTAAATTTGAATTGTTAATAACTTTAATATAGTTGATTTCTTTTAGTTTTTAATTAATAATATAACCATTCTTATTTTTCATGAGATATAATACTCCAAATATGTCATATTTCTTCTAATCTGAATTCTGAATTCTTATAAACATCAACTTGTACTATTATGGATTAATACTTATTTATACGTATAAAATAAAATTTTGATTATGGTTACTAAGTTCTACCTTACCCGAACCTGTAACTTTCTCTCTAGCTCTGTCCTTGATCAGTTCGAGTTAATTACTTTCAATTTGTTTTTTTTTTAAATCTAATTATGTTATGTGCAGGAATGTGGTGCACACGTCAGTGTATGACAAGAATATAGAGGAATATGTGTCATCGTGGGTACCTGATGAAATAATCGAGGTAGAATCGGACAAATACAAGTACTGGACTCCTCATCCCCAAACAGGGGTGTTTGGGCCAGCTACTGATCACATTATAAAATATGGTTCTCAATTCTCCACGGTAGATTCTGTGTTGGAACAAAAGACATTTTTTCGTGATTTCGAGGATCTGGAGAAGCCTAGTTATCCTTAAGTTTCAGAAAACATCACAACAGAAAATACTACTAGCAGGGAAGGTGAAAGAGGTGTTTCGTTTGTTGTGTTCTATGAATATGTGATATGTTTAGTTAATTAATGGAAGTATAATATGGAGTATGTATAGAATAAAACTAGCTACTCTGTGTGGGCTGCTTTTAAATGGTCATATGGTGCAATACATACGATCAAACTTCTCTGTAATATCGTTTGTTTGTCCAAATTAAAAAAAAAAGTTAGTATTGTATAGAGAATATGTAATAGAACATAAGATTAAAAGTTGGTTCCAAGAAGCTATATTGTTACAATGAAATCTATATATATAATAAATCTAAATCAAGA</genome_strand>
        <mrna_strand>GATCGCTATAAC.......................................................................................AATTGCATTTGCATGGCCACTAATTTACAGAAACGTGGACTGGTAAGCTTGGGGAAACGATTTGTGAACCAGATAACTTATTCAACTTCTCGAAATTCTGCCAACTCATCATCTACTGCGCTCTCTGGCAG.................................................................................................................................................................................................................................................................................................................................................................................................GAATGTGGTGCACACGTCAGTGTATGACAAGAATATAGAGGAATATGTGTCATCGTGGGTACCTGATGAAATAATCGAGGTAGAATCGGACAAATACAAGTACTGGACTCCTCATCCCCAAACAGGGGTGTTTGGGCCAGCTACTGATCACATTATAAAATATGGTTCTCAATTCTCCACGGTAGATTCTGTGTTGGAACAAAAGACATTTTTTCGTGATTTCGAGGATCTGGAGAAGCCTAGTTATCCTTAAGTTTCAGAAAACATCACAACAGAAAATACTACTAGCAGGGAAGGTGAAAGAGGTGTTTCGTTTGTTGTGTTCTATGAATATGTGATATGTTTAGTTAATTAATGGAAGTATAATATGGAGTATGTATAGAATAAAACTAGCTACTCTGTGTGGGCTGCTTTTAAATGGTCATATGGTGCAATACATACGATCAAACTTCTCTGTAATATCGTTTGTTTGTCCAAATTAAAAAAAAAAGTTAGTATTGTATAGAGAATATGTAATAGAACATAAGATTAAAAGTTGGTTCCAAGAAGCTATATTGTTACAATGAAATCTATATATATAATAAATCTAAATCAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E712863" ref_strand="+" ref_description="SGN-E712863 [FB06AB06]">
      <seq>attagctcataatttacttattattactgtttaatagccatttttaaacatcttctttttcagaattgcatttgcatggccactaatttacagaaacgtggactggtaagcttggggaaacgatttgtgaaccagataacttattcaacttctcgaaattctgccaactcatcatctactgcgctctctggcaggaatgtggtgcacacgtcagtgtatgacaagaatatagaggaatatgtgtcatcgtgggtacctgatgaaataatcgaggtagaatcggacaaatacaagtactggactcctcatccccaaacaggggtgtttgggccagctactgatcacattataaaatatggttctcaattctccacggtagattctgtgttggaacaaaagacattttttcgtgatttcgaggatctggagaagcctagttatccttaagtttcagaaaacatcacaacagaaaatactactagcagggaaggtgaaagaggtgtttcgtttgttgtgttctatgaatatgtgatatgtttagttaattaatggaagtataatatggagtatgtatagaataaaactagctactctgtgtgggctgcttttaaatggtcatatggtgcaatacatacgatcaaacttctctgtaatatcgtttgtttgtccaaattaaaaaaaaaagttagtattgtatagagaatatgtaatagaacataagattaaaagttggttccaagaagctatattgttacaatgaaatctatatatataataaatctaaatcaagaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0113N10.1" temp_strand="-" temp_description="C06SLm0113N10.1  AC219227.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0113N10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11864" stop="10088"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11564" g_stop="11371" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="194" r_length="194" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11370" i_stop="10986" i_length="385">
            <donor d_prob="0.848" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10985" g_stop="10389" g_length="597"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="791" r_length="597" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0113N10.1" gen_strand="-" ref_id="SGN-E712863" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>791</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0113N10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E712863" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11564" e_stop="11371"/>
          <exon e_start="10985" e_stop="10389"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTAGCTCATAATTTACTTATTATTACTGTTTAATAGCCATTTTTAAACATCTTCTTTTTCAGAATTGCATTTGCATGGCCACTAATTTACAGAAACGTGGACTGGTAAGCTTGGGGAAACGATTTGTGAACCAGATAACTTATTCAACTTCTCGAAATTCTGCCAACTCATCATCTACTGCGCTCTCTGGCAGGTATACTCTGAACCAGCAGTGGCTCAAGCATATTAGTGGCCTAAAACAAAAATAAAACAAGCTTTAAATTTGAATTGTTAATAACTTTAATATAGTTGATTTCTTTTAGTTTTTAATTAATAATATAACCATTCTTATTTTTCATGAGATATAATACTCCAAATATGTCATATTTCTTCTAATCTGAATTCTGAATTCTTATAAACATCAACTTGTACTATTATGGATTAATACTTATTTATACGTATAAAATAAAATTTTGATTATGGTTACTAAGTTCTACCTTACCCGAACCTGTAACTTTCTCTCTAGCTCTGTCCTTGATCAGTTCGAGTTAATTACTTTCAATTTGTTTTTTTTTTAAATCTAATTATGTTATGTGCAGGAATGTGGTGCACACGTCAGTGTATGACAAGAATATAGAGGAATATGTGTCATCGTGGGTACCTGATGAAATAATCGAGGTAGAATCGGACAAATACAAGTACTGGACTCCTCATCCCCAAACAGGGGTGTTTGGGCCAGCTACTGATCACATTATAAAATATGGTTCTCAATTCTCCACGGTAGATTCTGTGTTGGAACAAAAGACATTTTTTCGTGATTTCGAGGATCTGGAGAAGCCTAGTTATCCTTAAGTTTCAGAAAACATCACAACAGAAAATACTACTAGCAGGGAAGGTGAAAGAGGTGTTTCGTTTGTTGTGTTCTATGAATATGTGATATGTTTAGTTAATTAATGGAAGTATAATATGGAGTATGTATAGAATAAAACTAGCTACTCTGTGTGGGCTGCTTTTAAATGGTCATATGGTGCAATACATACGATCAAACTTCTCTGTAATATCGTTTGTTTGTCCAAATTAAAAAAAAAAGTTAGTATTGTATAGAGAATATGTAATAGAACATAAGATTAAAAGTTGGTTCCAAGAAGCTATATTGTTACAATGAAATCTATATATATAATAAATCTAAATCAAGA</genome_strand>
        <mrna_strand>ATTAGCTCATAATTTACTTATTATTACTGTTTAATAGCCATTTTTAAACATCTTCTTTTTCAGAATTGCATTTGCATGGCCACTAATTTACAGAAACGTGGACTGGTAAGCTTGGGGAAACGATTTGTGAACCAGATAACTTATTCAACTTCTCGAAATTCTGCCAACTCATCATCTACTGCGCTCTCTGGCAG.................................................................................................................................................................................................................................................................................................................................................................................................GAATGTGGTGCACACGTCAGTGTATGACAAGAATATAGAGGAATATGTGTCATCGTGGGTACCTGATGAAATAATCGAGGTAGAATCGGACAAATACAAGTACTGGACTCCTCATCCCCAAACAGGGGTGTTTGGGCCAGCTACTGATCACATTATAAAATATGGTTCTCAATTCTCCACGGTAGATTCTGTGTTGGAACAAAAGACATTTTTTCGTGATTTCGAGGATCTGGAGAAGCCTAGTTATCCTTAAGTTTCAGAAAACATCACAACAGAAAATACTACTAGCAGGGAAGGTGAAAGAGGTGTTTCGTTTGTTGTGTTCTATGAATATGTGATATGTTTAGTTAATTAATGGAAGTATAATATGGAGTATGTATAGAATAAAACTAGCTACTCTGTGTGGGCTGCTTTTAAATGGTCATATGGTGCAATACATACGATCAAACTTCTCTGTAATATCGTTTGTTTGTCCAAATTAAAAAAAAAAGTTAGTATTGTATAGAGAATATGTAATAGAACATAAGATTAAAAGTTGGTTCCAAGAAGCTATATTGTTACAATGAAATCTATATATATAATAAATCTAAATCAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E715210" ref_strand="+" ref_description="SGN-E715210 [FB13CF04]">
      <seq>attagctcataatttacttattattactgtttaatagccatttttaaacatcttctttttcagaattgcatttgcatggccactaatttacagaaacgtggactggtaagcttggggaaacgatttgtgaaccagataacttattcaacttctcgaaattctgccaactcatcatctactgcgctctctggcaggaatgtggtgcacacgtcagtgtatgacaagaatatagaggaatatgtgtcatcgtgggtacctgatgaaataatcgaggtagaatcggacaaatacaagtactggactcctcatccccaaacaggggtgtttgggccagctactgatcacattataaaatatggttctcaattctccacggtagattctgtgttggaacaaaagacattttttcgtgatttcgaggatctggagaagcctagttatccttaagtttcagaaaacatcacaacagaaaatactactagcagggaaggtgaaagaggtgtttcgtttgttgtgttctatgaatatgtgatatgtttagttaattaatggaagtataatatggagtatgtatagaataaaactagctactctgtgtgggctgcttttaaatggtcatatggtgcaatacatacgatcaaacttctctgtaatatcgtttgtttgtccaaattaaaaaaaaaagttagtattgtatagagaatatgtaatagaacataagattaaaagttggttccaagaagctatattgttacaatgaaatctatatatataataaatctaaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0113N10.1" temp_strand="-" temp_description="C06SLm0113N10.1  AC219227.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0113N10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11864" stop="10093"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11564" g_stop="11371" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="194" r_length="194" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11370" i_stop="10986" i_length="385">
            <donor d_prob="0.848" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10985" g_stop="10393" g_length="593"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="787" r_length="593" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0113N10.1" gen_strand="-" ref_id="SGN-E715210" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>787</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0113N10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E715210" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11564" e_stop="11371"/>
          <exon e_start="10985" e_stop="10393"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTAGCTCATAATTTACTTATTATTACTGTTTAATAGCCATTTTTAAACATCTTCTTTTTCAGAATTGCATTTGCATGGCCACTAATTTACAGAAACGTGGACTGGTAAGCTTGGGGAAACGATTTGTGAACCAGATAACTTATTCAACTTCTCGAAATTCTGCCAACTCATCATCTACTGCGCTCTCTGGCAGGTATACTCTGAACCAGCAGTGGCTCAAGCATATTAGTGGCCTAAAACAAAAATAAAACAAGCTTTAAATTTGAATTGTTAATAACTTTAATATAGTTGATTTCTTTTAGTTTTTAATTAATAATATAACCATTCTTATTTTTCATGAGATATAATACTCCAAATATGTCATATTTCTTCTAATCTGAATTCTGAATTCTTATAAACATCAACTTGTACTATTATGGATTAATACTTATTTATACGTATAAAATAAAATTTTGATTATGGTTACTAAGTTCTACCTTACCCGAACCTGTAACTTTCTCTCTAGCTCTGTCCTTGATCAGTTCGAGTTAATTACTTTCAATTTGTTTTTTTTTTAAATCTAATTATGTTATGTGCAGGAATGTGGTGCACACGTCAGTGTATGACAAGAATATAGAGGAATATGTGTCATCGTGGGTACCTGATGAAATAATCGAGGTAGAATCGGACAAATACAAGTACTGGACTCCTCATCCCCAAACAGGGGTGTTTGGGCCAGCTACTGATCACATTATAAAATATGGTTCTCAATTCTCCACGGTAGATTCTGTGTTGGAACAAAAGACATTTTTTCGTGATTTCGAGGATCTGGAGAAGCCTAGTTATCCTTAAGTTTCAGAAAACATCACAACAGAAAATACTACTAGCAGGGAAGGTGAAAGAGGTGTTTCGTTTGTTGTGTTCTATGAATATGTGATATGTTTAGTTAATTAATGGAAGTATAATATGGAGTATGTATAGAATAAAACTAGCTACTCTGTGTGGGCTGCTTTTAAATGGTCATATGGTGCAATACATACGATCAAACTTCTCTGTAATATCGTTTGTTTGTCCAAATTAAAAAAAAAAGTTAGTATTGTATAGAGAATATGTAATAGAACATAAGATTAAAAGTTGGTTCCAAGAAGCTATATTGTTACAATGAAATCTATATATATAATAAATCTAAATC</genome_strand>
        <mrna_strand>ATTAGCTCATAATTTACTTATTATTACTGTTTAATAGCCATTTTTAAACATCTTCTTTTTCAGAATTGCATTTGCATGGCCACTAATTTACAGAAACGTGGACTGGTAAGCTTGGGGAAACGATTTGTGAACCAGATAACTTATTCAACTTCTCGAAATTCTGCCAACTCATCATCTACTGCGCTCTCTGGCAG.................................................................................................................................................................................................................................................................................................................................................................................................GAATGTGGTGCACACGTCAGTGTATGACAAGAATATAGAGGAATATGTGTCATCGTGGGTACCTGATGAAATAATCGAGGTAGAATCGGACAAATACAAGTACTGGACTCCTCATCCCCAAACAGGGGTGTTTGGGCCAGCTACTGATCACATTATAAAATATGGTTCTCAATTCTCCACGGTAGATTCTGTGTTGGAACAAAAGACATTTTTTCGTGATTTCGAGGATCTGGAGAAGCCTAGTTATCCTTAAGTTTCAGAAAACATCACAACAGAAAATACTACTAGCAGGGAAGGTGAAAGAGGTGTTTCGTTTGTTGTGTTCTATGAATATGTGATATGTTTAGTTAATTAATGGAAGTATAATATGGAGTATGTATAGAATAAAACTAGCTACTCTGTGTGGGCTGCTTTTAAATGGTCATATGGTGCAATACATACGATCAAACTTCTCTGTAATATCGTTTGTTTGTCCAAATTAAAAAAAAAAGTTAGTATTGTATAGAGAATATGTAATAGAACATAAGATTAAAAGTTGGTTCCAAGAAGCTATATTGTTACAATGAAATCTATATATATAATAAATCTAAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E716490" ref_strand="+" ref_description="SGN-E716490 [FB17AG08]">
      <seq>aggattacctcataatttacttattagttactgtttaatagccatttttaaacatcttcgttttcagaattgcatttgcctggccactaatttacagaaacgtggactggtaagcttggggaaacgatttgtgaaccagataacttattcaacttctcgaaattctgccaactcatcatctactgcgctctctggcaggaatgtggtgcacacgtcaatgtatgacgagaatatataggaatatgtgtcatcgcgggtacctgatgaaataatcgaggtagaatcggacaaatacaagtactggactcctcatccccaaacaggggtgtttgggccagctactgatcacattataaaatatggttctcaattctccacggtagattctgtgttggaacaaaagacattttttcgtgatttccaggatctggagaagcctagttatccttaagtttcagaaaacatcacaacagaaaatactactagcagggaaggtgaaagaggtgtttcgtttgttgtgttctatgaatatgtgatatgtttagttaattaatggaagtataatatggagtatgtatagaataaaactagctactctgtgtgggctgcttttaaatggtcatatggtgcaatacatacgatcaaacttctctgtaatatcgtttgtttgtccaaattaaaaaaaaaagttagtattgtatagagaatatgtaatagaacataagattaaaagttggttccaagaagctatattgttacaatgaaatctatatatataataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0113N10.1" temp_strand="-" temp_description="C06SLm0113N10.1  AC219227.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0113N10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11864" stop="10101"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11567" g_stop="11371" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="198" r_length="198" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11370" i_stop="10986" i_length="385">
            <donor d_prob="0.848" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10985" g_stop="10394" g_length="592"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="790" r_length="592" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0113N10.1" gen_strand="-" ref_id="SGN-E716490" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>789</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0113N10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E716490" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11567" e_stop="11371"/>
          <exon e_start="10985" e_stop="10394"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTATTAGCTCATAATTTACTTATTA-TTACTGTTTAATAGCCATTTTTAAACATCTTCTTTTTCAGAATTGCATTTGCATGGCCACTAATTTACAGAAACGTGGACTGGTAAGCTTGGGGAAACGATTTGTGAACCAGATAACTTATTCAACTTCTCGAAATTCTGCCAACTCATCATCTACTGCGCTCTCTGGCAGGTATACTCTGAACCAGCAGTGGCTCAAGCATATTAGTGGCCTAAAACAAAAATAAAACAAGCTTTAAATTTGAATTGTTAATAACTTTAATATAGTTGATTTCTTTTAGTTTTTAATTAATAATATAACCATTCTTATTTTTCATGAGATATAATACTCCAAATATGTCATATTTCTTCTAATCTGAATTCTGAATTCTTATAAACATCAACTTGTACTATTATGGATTAATACTTATTTATACGTATAAAATAAAATTTTGATTATGGTTACTAAGTTCTACCTTACCCGAACCTGTAACTTTCTCTCTAGCTCTGTCCTTGATCAGTTCGAGTTAATTACTTTCAATTTGTTTTTTTTTTAAATCTAATTATGTTATGTGCAGGAATGTGGTGCACACGTCAGTGTATGACAAGAATATAGAGGAATATGTGTCATCGTGGGTACCTGATGAAATAATCGAGGTAGAATCGGACAAATACAAGTACTGGACTCCTCATCCCCAAACAGGGGTGTTTGGGCCAGCTACTGATCACATTATAAAATATGGTTCTCAATTCTCCACGGTAGATTCTGTGTTGGAACAAAAGACATTTTTTCGTGATTTCGAGGATCTGGAGAAGCCTAGTTATCCTTAAGTTTCAGAAAACATCACAACAGAAAATACTACTAGCAGGGAAGGTGAAAGAGGTGTTTCGTTTGTTGTGTTCTATGAATATGTGATATGTTTAGTTAATTAATGGAAGTATAATATGGAGTATGTATAGAATAAAACTAGCTACTCTGTGTGGGCTGCTTTTAAATGGTCATATGGTGCAATACATACGATCAAACTTCTCTGTAATATCGTTTGTTTGTCCAAATTAAAAAAAAAAGTTAGTATTGTATAGAGAATATGTAATAGAACATAAGATTAAAAGTTGGTTCCAAGAAGCTATATTGTTACAATGAAATCTATATATATAATAAATCTAAAT</genome_strand>
        <mrna_strand>AGGATTACCTCATAATTTACTTATTAGTTACTGTTTAATAGCCATTTTTAAACATCTTCGTTTTCAGAATTGCATTTGCCTGGCCACTAATTTACAGAAACGTGGACTGGTAAGCTTGGGGAAACGATTTGTGAACCAGATAACTTATTCAACTTCTCGAAATTCTGCCAACTCATCATCTACTGCGCTCTCTGGCAG.................................................................................................................................................................................................................................................................................................................................................................................................GAATGTGGTGCACACGTCAATGTATGACGAGAATATATAGGAATATGTGTCATCGCGGGTACCTGATGAAATAATCGAGGTAGAATCGGACAAATACAAGTACTGGACTCCTCATCCCCAAACAGGGGTGTTTGGGCCAGCTACTGATCACATTATAAAATATGGTTCTCAATTCTCCACGGTAGATTCTGTGTTGGAACAAAAGACATTTTTTCGTGATTTCCAGGATCTGGAGAAGCCTAGTTATCCTTAAGTTTCAGAAAACATCACAACAGAAAATACTACTAGCAGGGAAGGTGAAAGAGGTGTTTCGTTTGTTGTGTTCTATGAATATGTGATATGTTTAGTTAATTAATGGAAGTATAATATGGAGTATGTATAGAATAAAACTAGCTACTCTGTGTGGGCTGCTTTTAAATGGTCATATGGTGCAATACATACGATCAAACTTCTCTGTAATATCGTTTGTTTGTCCAAATTAAAAAAAAAAGTTAGTATTGTATAGAGAATATGTAATAGAACATAAGATTAAAAGTTGGTTCCAAGAAGCTATATTGTTACAATGAAATCTATATATATAATAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E715853" ref_strand="+" ref_description="SGN-E715853 [FB15BG10]">
      <seq>tattagctcataatttacttattattactgtttaatagccatttttaaacatcttctttttcagaattgcatttgcatggccactaatttacagaaacgtggactggtaagcttggggaaacgatttgtgaaccagataacttattcaacttctcgaaattctgccaactcatcatctactgcgctctctggcaggaatgtggtgcacacgtcagtgtatgacaagaatatagaggaatatgtgtcatcgtgggtacctgatgaaataatcgaggtagaatcggacaaatacaagtactggactcctcatccccaaacaggggtgtttgggccagctactgatcacattataaaatatggttctcaattctccacggtagattctgtgttggaacaaaagacattttttcgtgatttcgaggatctggagaagcctagttatccttaagtttcagaaaacatcacaacagaaaatactactagcagggaaggtgaaagaggtgtttcgtttgttgtgttctatgaatatgtgatatgtttagttaattaatggaagtataatatggagtatgtatagaataaaactagctactctgtgtgggctgcttttaaatggtcatatggtgcaatacatacgatcaaacttctctgtaatatcgtttgtttgtccaaattaaaaaaaaaagttagtattgtatagagaatatgtaatagaacataagattaaaagttggttccaagaagctatattgttacaatgaaatctatatatataataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0113N10.1" temp_strand="-" temp_description="C06SLm0113N10.1  AC219227.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0113N10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11865" stop="10101"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11565" g_stop="11371" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="195" r_length="195" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11370" i_stop="10986" i_length="385">
            <donor d_prob="0.848" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10985" g_stop="10394" g_length="592"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="787" r_length="592" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0113N10.1" gen_strand="-" ref_id="SGN-E715853" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>787</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0113N10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E715853" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11565" e_stop="11371"/>
          <exon e_start="10985" e_stop="10394"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTAGCTCATAATTTACTTATTATTACTGTTTAATAGCCATTTTTAAACATCTTCTTTTTCAGAATTGCATTTGCATGGCCACTAATTTACAGAAACGTGGACTGGTAAGCTTGGGGAAACGATTTGTGAACCAGATAACTTATTCAACTTCTCGAAATTCTGCCAACTCATCATCTACTGCGCTCTCTGGCAGGTATACTCTGAACCAGCAGTGGCTCAAGCATATTAGTGGCCTAAAACAAAAATAAAACAAGCTTTAAATTTGAATTGTTAATAACTTTAATATAGTTGATTTCTTTTAGTTTTTAATTAATAATATAACCATTCTTATTTTTCATGAGATATAATACTCCAAATATGTCATATTTCTTCTAATCTGAATTCTGAATTCTTATAAACATCAACTTGTACTATTATGGATTAATACTTATTTATACGTATAAAATAAAATTTTGATTATGGTTACTAAGTTCTACCTTACCCGAACCTGTAACTTTCTCTCTAGCTCTGTCCTTGATCAGTTCGAGTTAATTACTTTCAATTTGTTTTTTTTTTAAATCTAATTATGTTATGTGCAGGAATGTGGTGCACACGTCAGTGTATGACAAGAATATAGAGGAATATGTGTCATCGTGGGTACCTGATGAAATAATCGAGGTAGAATCGGACAAATACAAGTACTGGACTCCTCATCCCCAAACAGGGGTGTTTGGGCCAGCTACTGATCACATTATAAAATATGGTTCTCAATTCTCCACGGTAGATTCTGTGTTGGAACAAAAGACATTTTTTCGTGATTTCGAGGATCTGGAGAAGCCTAGTTATCCTTAAGTTTCAGAAAACATCACAACAGAAAATACTACTAGCAGGGAAGGTGAAAGAGGTGTTTCGTTTGTTGTGTTCTATGAATATGTGATATGTTTAGTTAATTAATGGAAGTATAATATGGAGTATGTATAGAATAAAACTAGCTACTCTGTGTGGGCTGCTTTTAAATGGTCATATGGTGCAATACATACGATCAAACTTCTCTGTAATATCGTTTGTTTGTCCAAATTAAAAAAAAAAGTTAGTATTGTATAGAGAATATGTAATAGAACATAAGATTAAAAGTTGGTTCCAAGAAGCTATATTGTTACAATGAAATCTATATATATAATAAATCTAAAT</genome_strand>
        <mrna_strand>TATTAGCTCATAATTTACTTATTATTACTGTTTAATAGCCATTTTTAAACATCTTCTTTTTCAGAATTGCATTTGCATGGCCACTAATTTACAGAAACGTGGACTGGTAAGCTTGGGGAAACGATTTGTGAACCAGATAACTTATTCAACTTCTCGAAATTCTGCCAACTCATCATCTACTGCGCTCTCTGGCAG.................................................................................................................................................................................................................................................................................................................................................................................................GAATGTGGTGCACACGTCAGTGTATGACAAGAATATAGAGGAATATGTGTCATCGTGGGTACCTGATGAAATAATCGAGGTAGAATCGGACAAATACAAGTACTGGACTCCTCATCCCCAAACAGGGGTGTTTGGGCCAGCTACTGATCACATTATAAAATATGGTTCTCAATTCTCCACGGTAGATTCTGTGTTGGAACAAAAGACATTTTTTCGTGATTTCGAGGATCTGGAGAAGCCTAGTTATCCTTAAGTTTCAGAAAACATCACAACAGAAAATACTACTAGCAGGGAAGGTGAAAGAGGTGTTTCGTTTGTTGTGTTCTATGAATATGTGATATGTTTAGTTAATTAATGGAAGTATAATATGGAGTATGTATAGAATAAAACTAGCTACTCTGTGTGGGCTGCTTTTAAATGGTCATATGGTGCAATACATACGATCAAACTTCTCTGTAATATCGTTTGTTTGTCCAAATTAAAAAAAAAAGTTAGTATTGTATAGAGAATATGTAATAGAACATAAGATTAAAAGTTGGTTCCAAGAAGCTATATTGTTACAATGAAATCTATATATATAATAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E718025" ref_strand="+" ref_description="SGN-E718025 [FC03BG06]">
      <seq>gggcgattggcggccaatcggccgaattgatacttttctcttctcatattattagctcataatttacttattattactgtttaatacccatttttaaacatcttctttttcagaattgcatttgcatggccactaatttacagaaacgtggactggtaagcttggggaaacgatttgtgaaccagataacttattcaacttctcgaaattctgccaactcatcatctactgcgctctctggcaggaatgtggtgcacacgtcagtgtatgacaagaatatagaggaatatgtgtcatcgtgggtacctgatgaaataatcgaggtagaatcggacaaatacaagtactggactcctcatccccaaacaggggtgtttgggccagctactgatcacattataaaatatggttctcaattctccacggtagattctgtgttggaacaaaagacattttttcgtgatttcgaggatctggagaagcctagttatccttaagtttcagaaaacatcacaacagaaaatactactagcagggaaggtgaaagaggtgtttcgtttgttgtgttctatgaatatgtgatatgtttagttaattaatggaagtataatatggagtatgtatagaataaaactagctactctgtgtgggctgcttttaaatggtcatatggtgcaatacatacgatcaaacttctctgtaatatcgtttgtttgtccaaattaaaaaaaaaagttagtattgtatagagaatatgtaatagaacataagattaaaagttggttccaagaagctatattgttacaatgaaatctatatatataataaatctaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0113N10.1" temp_strand="-" temp_description="C06SLm0113N10.1  AC219227.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0113N10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11902" stop="10096"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11586" g_stop="11371" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="244" r_length="215" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11370" i_stop="10986" i_length="385">
            <donor d_prob="0.848" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10985" g_stop="10396" g_length="590"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="834" r_length="590" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0113N10.1" gen_strand="-" ref_id="SGN-E718025" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>806</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0113N10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E718025" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11586" e_stop="11371"/>
          <exon e_start="10985" e_stop="10396"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATACTTTTCTCTTCTTATAATTATTAGCTCATAATTTACTTATTATTACTGTTTAATAGCCATTTTTAAACATCTTCTTTTTCAGAATTGCATTTGCATGGCCACTAATTTACAGAAACGTGGACTGGTAAGCTTGGGGAAACGATTTGTGAACCAGATAACTTATTCAACTTCTCGAAATTCTGCCAACTCATCATCTACTGCGCTCTCTGGCAGGTATACTCTGAACCAGCAGTGGCTCAAGCATATTAGTGGCCTAAAACAAAAATAAAACAAGCTTTAAATTTGAATTGTTAATAACTTTAATATAGTTGATTTCTTTTAGTTTTTAATTAATAATATAACCATTCTTATTTTTCATGAGATATAATACTCCAAATATGTCATATTTCTTCTAATCTGAATTCTGAATTCTTATAAACATCAACTTGTACTATTATGGATTAATACTTATTTATACGTATAAAATAAAATTTTGATTATGGTTACTAAGTTCTACCTTACCCGAACCTGTAACTTTCTCTCTAGCTCTGTCCTTGATCAGTTCGAGTTAATTACTTTCAATTTGTTTTTTTTTTAAATCTAATTATGTTATGTGCAGGAATGTGGTGCACACGTCAGTGTATGACAAGAATATAGAGGAATATGTGTCATCGTGGGTACCTGATGAAATAATCGAGGTAGAATCGGACAAATACAAGTACTGGACTCCTCATCCCCAAACAGGGGTGTTTGGGCCAGCTACTGATCACATTATAAAATATGGTTCTCAATTCTCCACGGTAGATTCTGTGTTGGAACAAAAGACATTTTTTCGTGATTTCGAGGATCTGGAGAAGCCTAGTTATCCTTAAGTTTCAGAAAACATCACAACAGAAAATACTACTAGCAGGGAAGGTGAAAGAGGTGTTTCGTTTGTTGTGTTCTATGAATATGTGATATGTTTAGTTAATTAATGGAAGTATAATATGGAGTATGTATAGAATAAAACTAGCTACTCTGTGTGGGCTGCTTTTAAATGGTCATATGGTGCAATACATACGATCAAACTTCTCTGTAATATCGTTTGTTTGTCCAAATTAAAAAAAAAAGTTAGTATTGTATAGAGAATATGTAATAGAACATAAGATTAAAAGTTGGTTCCAAGAAGCTATATTGTTACAATGAAATCTATATATATAATAAATCTAA</genome_strand>
        <mrna_strand>ATACTTTTCTCTTCTCAT-ATTATTAGCTCATAATTTACTTATTATTACTGTTTAATACCCATTTTTAAACATCTTCTTTTTCAGAATTGCATTTGCATGGCCACTAATTTACAGAAACGTGGACTGGTAAGCTTGGGGAAACGATTTGTGAACCAGATAACTTATTCAACTTCTCGAAATTCTGCCAACTCATCATCTACTGCGCTCTCTGGCAG.................................................................................................................................................................................................................................................................................................................................................................................................GAATGTGGTGCACACGTCAGTGTATGACAAGAATATAGAGGAATATGTGTCATCGTGGGTACCTGATGAAATAATCGAGGTAGAATCGGACAAATACAAGTACTGGACTCCTCATCCCCAAACAGGGGTGTTTGGGCCAGCTACTGATCACATTATAAAATATGGTTCTCAATTCTCCACGGTAGATTCTGTGTTGGAACAAAAGACATTTTTTCGTGATTTCGAGGATCTGGAGAAGCCTAGTTATCCTTAAGTTTCAGAAAACATCACAACAGAAAATACTACTAGCAGGGAAGGTGAAAGAGGTGTTTCGTTTGTTGTGTTCTATGAATATGTGATATGTTTAGTTAATTAATGGAAGTATAATATGGAGTATGTATAGAATAAAACTAGCTACTCTGTGTGGGCTGCTTTTAAATGGTCATATGGTGCAATACATACGATCAAACTTCTCTGTAATATCGTTTGTTTGTCCAAATTAAAAAAAAAAGTTAGTATTGTATAGAGAATATGTAATAGAACATAAGATTAAAAGTTGGTTCCAAGAAGCTATATTGTTACAATGAAATCTATATATATAATAAATCTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E703939" ref_strand="+" ref_description="SGN-E703939 [FA22DF04]">
      <seq>tcataatttacttattattactgtttaatagccatttttaaacatcttctttttcagaattgcatttgcatggccactaatttacagaaacgtggactggtaagcttggggaaacgatttgtgaaccagataacttattcaacttctcgaaattctgccaactcatcatctactgcgctctctggcaggaatgtggtgcacacgtcagtgtatgacaagaatatagaggaatatgtgtcatcgtgggtacctgatgaaataatcgaggtagaatcggacaaatacaagtactggactcctcatccccaaacaggggtgtttgggccagctactgatcacattataaaatatggttctcaattctccacggtagattctgtgttggaacaaaagacattttttcgtgatttcgaggatctggagaagcctagttatccttaagtttcagaaaacatcacaacagaaaatactactagcagggaaggtgaaagaggtgtttcgtttgttgtgttctatgaatatgtgatatgtttagttaattaatggaagtataatatggagtatgtatagaataaaactagctactctgtgtgggctgcttttaaatggtcatatggtgcaatacatacgatcaaacttctctgtaatatcgtttgtttgtccaaattaaaaaaaaaagttagtattgtatagagaatatgtaatagaacataagattaaaagttggttccaagaagctatattgttacaatgaaatctatatataataaatctaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0113N10.1" temp_strand="-" temp_description="C06SLm0113N10.1  AC219227.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0113N10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11858" stop="10096"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11558" g_stop="11371" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="188" r_length="188" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11370" i_stop="10986" i_length="385">
            <donor d_prob="0.848" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10985" g_stop="10396" g_length="590"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="776" r_length="588" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0113N10.1" gen_strand="-" ref_id="SGN-E703939" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>778</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0113N10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E703939" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11558" e_stop="11371"/>
          <exon e_start="10985" e_stop="10396"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATAATTTACTTATTATTACTGTTTAATAGCCATTTTTAAACATCTTCTTTTTCAGAATTGCATTTGCATGGCCACTAATTTACAGAAACGTGGACTGGTAAGCTTGGGGAAACGATTTGTGAACCAGATAACTTATTCAACTTCTCGAAATTCTGCCAACTCATCATCTACTGCGCTCTCTGGCAGGTATACTCTGAACCAGCAGTGGCTCAAGCATATTAGTGGCCTAAAACAAAAATAAAACAAGCTTTAAATTTGAATTGTTAATAACTTTAATATAGTTGATTTCTTTTAGTTTTTAATTAATAATATAACCATTCTTATTTTTCATGAGATATAATACTCCAAATATGTCATATTTCTTCTAATCTGAATTCTGAATTCTTATAAACATCAACTTGTACTATTATGGATTAATACTTATTTATACGTATAAAATAAAATTTTGATTATGGTTACTAAGTTCTACCTTACCCGAACCTGTAACTTTCTCTCTAGCTCTGTCCTTGATCAGTTCGAGTTAATTACTTTCAATTTGTTTTTTTTTTAAATCTAATTATGTTATGTGCAGGAATGTGGTGCACACGTCAGTGTATGACAAGAATATAGAGGAATATGTGTCATCGTGGGTACCTGATGAAATAATCGAGGTAGAATCGGACAAATACAAGTACTGGACTCCTCATCCCCAAACAGGGGTGTTTGGGCCAGCTACTGATCACATTATAAAATATGGTTCTCAATTCTCCACGGTAGATTCTGTGTTGGAACAAAAGACATTTTTTCGTGATTTCGAGGATCTGGAGAAGCCTAGTTATCCTTAAGTTTCAGAAAACATCACAACAGAAAATACTACTAGCAGGGAAGGTGAAAGAGGTGTTTCGTTTGTTGTGTTCTATGAATATGTGATATGTTTAGTTAATTAATGGAAGTATAATATGGAGTATGTATAGAATAAAACTAGCTACTCTGTGTGGGCTGCTTTTAAATGGTCATATGGTGCAATACATACGATCAAACTTCTCTGTAATATCGTTTGTTTGTCCAAATTAAAAAAAAAAGTTAGTATTGTATAGAGAATATGTAATAGAACATAAGATTAAAAGTTGGTTCCAAGAAGCTATATTGTTACAATGAAATCTATATATATAATAAATCTAA</genome_strand>
        <mrna_strand>TCATAATTTACTTATTATTACTGTTTAATAGCCATTTTTAAACATCTTCTTTTTCAGAATTGCATTTGCATGGCCACTAATTTACAGAAACGTGGACTGGTAAGCTTGGGGAAACGATTTGTGAACCAGATAACTTATTCAACTTCTCGAAATTCTGCCAACTCATCATCTACTGCGCTCTCTGGCAG.................................................................................................................................................................................................................................................................................................................................................................................................GAATGTGGTGCACACGTCAGTGTATGACAAGAATATAGAGGAATATGTGTCATCGTGGGTACCTGATGAAATAATCGAGGTAGAATCGGACAAATACAAGTACTGGACTCCTCATCCCCAAACAGGGGTGTTTGGGCCAGCTACTGATCACATTATAAAATATGGTTCTCAATTCTCCACGGTAGATTCTGTGTTGGAACAAAAGACATTTTTTCGTGATTTCGAGGATCTGGAGAAGCCTAGTTATCCTTAAGTTTCAGAAAACATCACAACAGAAAATACTACTAGCAGGGAAGGTGAAAGAGGTGTTTCGTTTGTTGTGTTCTATGAATATGTGATATGTTTAGTTAATTAATGGAAGTATAATATGGAGTATGTATAGAATAAAACTAGCTACTCTGTGTGGGCTGCTTTTAAATGGTCATATGGTGCAATACATACGATCAAACTTCTCTGTAATATCGTTTGTTTGTCCAAATTAAAAAAAAAAGTTAGTATTGTATAGAGAATATGTAATAGAACATAAGATTAAAAGTTGGTTCCAAGAAGCTATATTGTTACAATGAAATC--TATATATAATAAATCTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E712427" ref_strand="+" ref_description="SGN-E712427 [FB04DC10]">
      <seq>cttattattactgtttaatagccatttttaaacatcttctttttcagaattgcatttgcatggccactaatttacagaaacgtggactggtaagcttggggaaacgatttgtgaaccagataacttattcaacttctcgaaattctgccaactcatcatctactgcgctctctggcaggaatgtggtgcacacgtcagtgtatgacaagaatatagaggaatatgtgtcatcgtgggtacctgatgaaataatcgaggtagaatcggacaaatacaagtactggactcctcatccccaaacaggggtgtttgggccagctactgatcacattataaaatatggttctcaattctccacggtagattctgtgttggaacaaaagacattttttcgtgatttcgaggatctggagaagcctagttatccttaagtttcagaaaacatcacaacagaaaatactactagcagggaaggtgaaagaggtgtttcgtttgttgtgttctatgaatatgtgatatgtttagttaattaatggaagtataatatggagtatgtatagaataaaactagctactctgtgtgggctgcttttaaatggtcatatggtgcaatacatacgatcaaacttctctgtaatatcgtttgtttgtccaaattaaaaaaaaaagttagtattgtatagagaatatgtaatagaacataagattaaaagttggttccaagaagctatattgttacaatgaaatctatatatataataaatctaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0113N10.1" temp_strand="-" temp_description="C06SLm0113N10.1  AC219227.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0113N10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11848" stop="10096"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11548" g_stop="11371" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="178" r_length="178" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11370" i_stop="10986" i_length="385">
            <donor d_prob="0.848" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10985" g_stop="10396" g_length="590"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="768" r_length="590" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0113N10.1" gen_strand="-" ref_id="SGN-E712427" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>768</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0113N10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E712427" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11548" e_stop="11371"/>
          <exon e_start="10985" e_stop="10396"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTATTATTACTGTTTAATAGCCATTTTTAAACATCTTCTTTTTCAGAATTGCATTTGCATGGCCACTAATTTACAGAAACGTGGACTGGTAAGCTTGGGGAAACGATTTGTGAACCAGATAACTTATTCAACTTCTCGAAATTCTGCCAACTCATCATCTACTGCGCTCTCTGGCAGGTATACTCTGAACCAGCAGTGGCTCAAGCATATTAGTGGCCTAAAACAAAAATAAAACAAGCTTTAAATTTGAATTGTTAATAACTTTAATATAGTTGATTTCTTTTAGTTTTTAATTAATAATATAACCATTCTTATTTTTCATGAGATATAATACTCCAAATATGTCATATTTCTTCTAATCTGAATTCTGAATTCTTATAAACATCAACTTGTACTATTATGGATTAATACTTATTTATACGTATAAAATAAAATTTTGATTATGGTTACTAAGTTCTACCTTACCCGAACCTGTAACTTTCTCTCTAGCTCTGTCCTTGATCAGTTCGAGTTAATTACTTTCAATTTGTTTTTTTTTTAAATCTAATTATGTTATGTGCAGGAATGTGGTGCACACGTCAGTGTATGACAAGAATATAGAGGAATATGTGTCATCGTGGGTACCTGATGAAATAATCGAGGTAGAATCGGACAAATACAAGTACTGGACTCCTCATCCCCAAACAGGGGTGTTTGGGCCAGCTACTGATCACATTATAAAATATGGTTCTCAATTCTCCACGGTAGATTCTGTGTTGGAACAAAAGACATTTTTTCGTGATTTCGAGGATCTGGAGAAGCCTAGTTATCCTTAAGTTTCAGAAAACATCACAACAGAAAATACTACTAGCAGGGAAGGTGAAAGAGGTGTTTCGTTTGTTGTGTTCTATGAATATGTGATATGTTTAGTTAATTAATGGAAGTATAATATGGAGTATGTATAGAATAAAACTAGCTACTCTGTGTGGGCTGCTTTTAAATGGTCATATGGTGCAATACATACGATCAAACTTCTCTGTAATATCGTTTGTTTGTCCAAATTAAAAAAAAAAGTTAGTATTGTATAGAGAATATGTAATAGAACATAAGATTAAAAGTTGGTTCCAAGAAGCTATATTGTTACAATGAAATCTATATATATAATAAATCTAA</genome_strand>
        <mrna_strand>CTTATTATTACTGTTTAATAGCCATTTTTAAACATCTTCTTTTTCAGAATTGCATTTGCATGGCCACTAATTTACAGAAACGTGGACTGGTAAGCTTGGGGAAACGATTTGTGAACCAGATAACTTATTCAACTTCTCGAAATTCTGCCAACTCATCATCTACTGCGCTCTCTGGCAG.................................................................................................................................................................................................................................................................................................................................................................................................GAATGTGGTGCACACGTCAGTGTATGACAAGAATATAGAGGAATATGTGTCATCGTGGGTACCTGATGAAATAATCGAGGTAGAATCGGACAAATACAAGTACTGGACTCCTCATCCCCAAACAGGGGTGTTTGGGCCAGCTACTGATCACATTATAAAATATGGTTCTCAATTCTCCACGGTAGATTCTGTGTTGGAACAAAAGACATTTTTTCGTGATTTCGAGGATCTGGAGAAGCCTAGTTATCCTTAAGTTTCAGAAAACATCACAACAGAAAATACTACTAGCAGGGAAGGTGAAAGAGGTGTTTCGTTTGTTGTGTTCTATGAATATGTGATATGTTTAGTTAATTAATGGAAGTATAATATGGAGTATGTATAGAATAAAACTAGCTACTCTGTGTGGGCTGCTTTTAAATGGTCATATGGTGCAATACATACGATCAAACTTCTCTGTAATATCGTTTGTTTGTCCAAATTAAAAAAAAAAGTTAGTATTGTATAGAGAATATGTAATAGAACATAAGATTAAAAGTTGGTTCCAAGAAGCTATATTGTTACAATGAAATCTATATATATAATAAATCTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E720496" ref_strand="+" ref_description="SGN-E720496 [FC10DH11]">
      <seq>gggcgattggcggcccatcggccgaattgatacttttctcttccccttaaagtagctcataatttacttattattactgtttaatcgccatttttaaacatcttctttttcagaattgcatttgcatggccactaatttacagaaacgtggactggtaagcttggggaaacgatttgtgaaccagataacttattcaacttctcgaaattctgccaactcatcatctactgcgctctctggcaggaatgtggtgcacacgtcagtgtatgacaagaatatagaggaatatgtgtcatcgtgggtacctgatgaaataatcgaggtagaatcggacaaatacaagtactggactcctcatccccaaacaggggtgtttgggccagctactgatcacattataaaatatggttctcaattctccacggtagattctgtgttggaacaaaagacattttttcgtgatttcgaggatctggagaagcctagttatccttaagtttcagaaaacatcacaacagaaaatactactagcagggaaggtgaaagaggtgtttcgtttgttgtgttctatgaatatgtgatatgtttagttaattaatggaagtataatatggagtatgtatagaataaaactagctactctgtgtgggctgcttttaaatggtcatatggtgcaatacatacgatcaaacttctctgtaatatcgtttgtttgtccaaattaaaaaaaaaagttagtattgtatagagaatatgtaatagaacataagattaaaagttggttccaagaagctatattgttacaatgaaatctatatatataataaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0113N10.1" temp_strand="-" temp_description="C06SLm0113N10.1  AC219227.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0113N10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11864" stop="10100"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11559" g_stop="11371" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="244" r_length="189" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11370" i_stop="10986" i_length="385">
            <donor d_prob="0.848" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10985" g_stop="10400" g_length="586"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="830" r_length="586" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0113N10.1" gen_strand="-" ref_id="SGN-E720496" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>775</cumulative_length_of_scored_exons>
        <coverage percentage="0.934" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0113N10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E720496" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11559" e_stop="11371"/>
          <exon e_start="10985" e_stop="10400"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCATAATTTACTTATTATTACTGTTTAATAGCCATTTTTAAACATCTTCTTTTTCAGAATTGCATTTGCATGGCCACTAATTTACAGAAACGTGGACTGGTAAGCTTGGGGAAACGATTTGTGAACCAGATAACTTATTCAACTTCTCGAAATTCTGCCAACTCATCATCTACTGCGCTCTCTGGCAGGTATACTCTGAACCAGCAGTGGCTCAAGCATATTAGTGGCCTAAAACAAAAATAAAACAAGCTTTAAATTTGAATTGTTAATAACTTTAATATAGTTGATTTCTTTTAGTTTTTAATTAATAATATAACCATTCTTATTTTTCATGAGATATAATACTCCAAATATGTCATATTTCTTCTAATCTGAATTCTGAATTCTTATAAACATCAACTTGTACTATTATGGATTAATACTTATTTATACGTATAAAATAAAATTTTGATTATGGTTACTAAGTTCTACCTTACCCGAACCTGTAACTTTCTCTCTAGCTCTGTCCTTGATCAGTTCGAGTTAATTACTTTCAATTTGTTTTTTTTTTAAATCTAATTATGTTATGTGCAGGAATGTGGTGCACACGTCAGTGTATGACAAGAATATAGAGGAATATGTGTCATCGTGGGTACCTGATGAAATAATCGAGGTAGAATCGGACAAATACAAGTACTGGACTCCTCATCCCCAAACAGGGGTGTTTGGGCCAGCTACTGATCACATTATAAAATATGGTTCTCAATTCTCCACGGTAGATTCTGTGTTGGAACAAAAGACATTTTTTCGTGATTTCGAGGATCTGGAGAAGCCTAGTTATCCTTAAGTTTCAGAAAACATCACAACAGAAAATACTACTAGCAGGGAAGGTGAAAGAGGTGTTTCGTTTGTTGTGTTCTATGAATATGTGATATGTTTAGTTAATTAATGGAAGTATAATATGGAGTATGTATAGAATAAAACTAGCTACTCTGTGTGGGCTGCTTTTAAATGGTCATATGGTGCAATACATACGATCAAACTTCTCTGTAATATCGTTTGTTTGTCCAAATTAAAAAAAAAAGTTAGTATTGTATAGAGAATATGTAATAGAACATAAGATTAAAAGTTGGTTCCAAGAAGCTATATTGTTACAATGAAATCTATATATATAATAAAT</genome_strand>
        <mrna_strand>CTCATAATTTACTTATTATTACTGTTTAATCGCCATTTTTAAACATCTTCTTTTTCAGAATTGCATTTGCATGGCCACTAATTTACAGAAACGTGGACTGGTAAGCTTGGGGAAACGATTTGTGAACCAGATAACTTATTCAACTTCTCGAAATTCTGCCAACTCATCATCTACTGCGCTCTCTGGCAG.................................................................................................................................................................................................................................................................................................................................................................................................GAATGTGGTGCACACGTCAGTGTATGACAAGAATATAGAGGAATATGTGTCATCGTGGGTACCTGATGAAATAATCGAGGTAGAATCGGACAAATACAAGTACTGGACTCCTCATCCCCAAACAGGGGTGTTTGGGCCAGCTACTGATCACATTATAAAATATGGTTCTCAATTCTCCACGGTAGATTCTGTGTTGGAACAAAAGACATTTTTTCGTGATTTCGAGGATCTGGAGAAGCCTAGTTATCCTTAAGTTTCAGAAAACATCACAACAGAAAATACTACTAGCAGGGAAGGTGAAAGAGGTGTTTCGTTTGTTGTGTTCTATGAATATGTGATATGTTTAGTTAATTAATGGAAGTATAATATGGAGTATGTATAGAATAAAACTAGCTACTCTGTGTGGGCTGCTTTTAAATGGTCATATGGTGCAATACATACGATCAAACTTCTCTGTAATATCGTTTGTTTGTCCAAATTAAAAAAAAAAGTTAGTATTGTATAGAGAATATGTAATAGAACATAAGATTAAAAGTTGGTTCCAAGAAGCTATATTGTTACAATGAAATCTATATATATAATAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E369447" ref_strand="+" ref_description="SGN-E369447 [TUS-23-O15](-)">
      <seq>tttaatagccatttttaaacatcttcttttcaagaattgcatttgcatggccactaatttacagaaacgtggactggtaagcttggggaaacgatttgtgaaccagataacttattcaacttctcgaaattctgccaactcatcatctactgcgctctctggcaggaatgtggtgcacacgtcagtgtatgacaagaatatagaggaatatgtgtcatcgtgggtacctgatgaaataatcgaggtagaatcggacaaatacaagtactggactcctcatccccaaacaggggtgtttgggccagctactgatcacattataaaatatggttctcaattctccacggtagattctgtgttggaacaaaagacattttttcgtgatttcgaggatctggagaagcctagttatccttaagtttcagaaaacatcacaacagaaaatactactagcagggaaggtgaaagaggtgtttcgtttgttgtgttctatgaatatgtgatatgtttagttaattaatggaagtataatatggagtatgtatagaataaaactagctactctgtgtgggctgcttttaaatggtcatatggtgcaatacatacgatcaaacttctctgtaatatcgtttgtttgtccaaattaaaaaaaaaagttagtattgtatagagaatatgtaatagaacataagattaaaagttggttccaagaagctatattgttacaatgaaatctatatcggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0113N10.1" temp_strand="-" temp_description="C06SLm0113N10.1  AC219227.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0113N10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11835" stop="10111"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11535" g_stop="11371" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="165" r_length="165" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11370" i_stop="10986" i_length="385">
            <donor d_prob="0.848" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10985" g_stop="10407" g_length="579"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="744" r_length="579" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0113N10.1" gen_strand="-" ref_id="SGN-E369447" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>744</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0113N10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E369447" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11535" e_stop="11371"/>
          <exon e_start="10985" e_stop="10407"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAATAGCCATTTTTAAACATCTTCTTTTTCAGAATTGCATTTGCATGGCCACTAATTTACAGAAACGTGGACTGGTAAGCTTGGGGAAACGATTTGTGAACCAGATAACTTATTCAACTTCTCGAAATTCTGCCAACTCATCATCTACTGCGCTCTCTGGCAGGTATACTCTGAACCAGCAGTGGCTCAAGCATATTAGTGGCCTAAAACAAAAATAAAACAAGCTTTAAATTTGAATTGTTAATAACTTTAATATAGTTGATTTCTTTTAGTTTTTAATTAATAATATAACCATTCTTATTTTTCATGAGATATAATACTCCAAATATGTCATATTTCTTCTAATCTGAATTCTGAATTCTTATAAACATCAACTTGTACTATTATGGATTAATACTTATTTATACGTATAAAATAAAATTTTGATTATGGTTACTAAGTTCTACCTTACCCGAACCTGTAACTTTCTCTCTAGCTCTGTCCTTGATCAGTTCGAGTTAATTACTTTCAATTTGTTTTTTTTTTAAATCTAATTATGTTATGTGCAGGAATGTGGTGCACACGTCAGTGTATGACAAGAATATAGAGGAATATGTGTCATCGTGGGTACCTGATGAAATAATCGAGGTAGAATCGGACAAATACAAGTACTGGACTCCTCATCCCCAAACAGGGGTGTTTGGGCCAGCTACTGATCACATTATAAAATATGGTTCTCAATTCTCCACGGTAGATTCTGTGTTGGAACAAAAGACATTTTTTCGTGATTTCGAGGATCTGGAGAAGCCTAGTTATCCTTAAGTTTCAGAAAACATCACAACAGAAAATACTACTAGCAGGGAAGGTGAAAGAGGTGTTTCGTTTGTTGTGTTCTATGAATATGTGATATGTTTAGTTAATTAATGGAAGTATAATATGGAGTATGTATAGAATAAAACTAGCTACTCTGTGTGGGCTGCTTTTAAATGGTCATATGGTGCAATACATACGATCAAACTTCTCTGTAATATCGTTTGTTTGTCCAAATTAAAAAAAAAAGTTAGTATTGTATAGAGAATATGTAATAGAACATAAGATTAAAAGTTGGTTCCAAGAAGCTATATTGTTACAATGAAATCTATATATAT</genome_strand>
        <mrna_strand>TTTAATAGCCATTTTTAAACATCTTCTTTTCAAGAATTGCATTTGCATGGCCACTAATTTACAGAAACGTGGACTGGTAAGCTTGGGGAAACGATTTGTGAACCAGATAACTTATTCAACTTCTCGAAATTCTGCCAACTCATCATCTACTGCGCTCTCTGGCAG.................................................................................................................................................................................................................................................................................................................................................................................................GAATGTGGTGCACACGTCAGTGTATGACAAGAATATAGAGGAATATGTGTCATCGTGGGTACCTGATGAAATAATCGAGGTAGAATCGGACAAATACAAGTACTGGACTCCTCATCCCCAAACAGGGGTGTTTGGGCCAGCTACTGATCACATTATAAAATATGGTTCTCAATTCTCCACGGTAGATTCTGTGTTGGAACAAAAGACATTTTTTCGTGATTTCGAGGATCTGGAGAAGCCTAGTTATCCTTAAGTTTCAGAAAACATCACAACAGAAAATACTACTAGCAGGGAAGGTGAAAGAGGTGTTTCGTTTGTTGTGTTCTATGAATATGTGATATGTTTAGTTAATTAATGGAAGTATAATATGGAGTATGTATAGAATAAAACTAGCTACTCTGTGTGGGCTGCTTTTAAATGGTCATATGGTGCAATACATACGATCAAACTTCTCTGTAATATCGTTTGTTTGTCCAAATTAAAAAAAAAAGTTAGTATTGTATAGAGAATATGTAATAGAACATAAGATTAAAAGTTGGTTCCAAGAAGCTATATTGTTACAATGAAATCTATATCGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E261051" ref_strand="+" ref_description="SGN-E261051 [cLEG-55-F22]">
      <seq>tattattactgtttaatagccatttttaaacatcttctttttcagaattgcatttgcatggccactaatttacagaaacgtggactggtaagcttggggaaacgatttgtgaaccagataacttattcaacttctcgaaattctgccaactcatcatctactgcgctctctggcaggaatgtggtgcacacgtcagtgtatgacaagaatatagaggaatatgtgtcatcgtgggtacctgatgaaataatcgaggtagaatcggacaaatacaagtactggactcctcatccccaaacaggggtgtttgggccagctactgatcacattataaaatatggttctcaattctccacggtagattctgtgttggaacaaaagacattttttcgtgatttcgaggatctggagaagcctagttatccttaagtttcagaaaacatcacaacagaaaatactactagcagggaaggtgaaagaggtgtttcgtttgttgtgttctatgaatatgtgatatgtttagttaattaatggaagtataatatggagtatgtatagaataaaactagctactctgtgtgggctgcttttaaatggtcatatggtgcaatacatacgatcaaacttctctgtaatatcgtttgtttgtccaaattaaaaaaaaagttagtattgtatagagaatatgtaatagaacataagattaaaagttggttccaagaagctatattgttacaatgaaatctatatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0113N10.1" temp_strand="-" temp_description="C06SLm0113N10.1  AC219227.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0113N10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11846" stop="10109"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11546" g_stop="11371" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="176" r_length="176" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11370" i_stop="10986" i_length="385">
            <donor d_prob="0.848" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10985" g_stop="10409" g_length="577"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="752" r_length="576" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0113N10.1" gen_strand="-" ref_id="SGN-E261051" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>753</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0113N10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E261051" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11546" e_stop="11371"/>
          <exon e_start="10985" e_stop="10409"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTATTACTGTTTAATAGCCATTTTTAAACATCTTCTTTTTCAGAATTGCATTTGCATGGCCACTAATTTACAGAAACGTGGACTGGTAAGCTTGGGGAAACGATTTGTGAACCAGATAACTTATTCAACTTCTCGAAATTCTGCCAACTCATCATCTACTGCGCTCTCTGGCAGGTATACTCTGAACCAGCAGTGGCTCAAGCATATTAGTGGCCTAAAACAAAAATAAAACAAGCTTTAAATTTGAATTGTTAATAACTTTAATATAGTTGATTTCTTTTAGTTTTTAATTAATAATATAACCATTCTTATTTTTCATGAGATATAATACTCCAAATATGTCATATTTCTTCTAATCTGAATTCTGAATTCTTATAAACATCAACTTGTACTATTATGGATTAATACTTATTTATACGTATAAAATAAAATTTTGATTATGGTTACTAAGTTCTACCTTACCCGAACCTGTAACTTTCTCTCTAGCTCTGTCCTTGATCAGTTCGAGTTAATTACTTTCAATTTGTTTTTTTTTTAAATCTAATTATGTTATGTGCAGGAATGTGGTGCACACGTCAGTGTATGACAAGAATATAGAGGAATATGTGTCATCGTGGGTACCTGATGAAATAATCGAGGTAGAATCGGACAAATACAAGTACTGGACTCCTCATCCCCAAACAGGGGTGTTTGGGCCAGCTACTGATCACATTATAAAATATGGTTCTCAATTCTCCACGGTAGATTCTGTGTTGGAACAAAAGACATTTTTTCGTGATTTCGAGGATCTGGAGAAGCCTAGTTATCCTTAAGTTTCAGAAAACATCACAACAGAAAATACTACTAGCAGGGAAGGTGAAAGAGGTGTTTCGTTTGTTGTGTTCTATGAATATGTGATATGTTTAGTTAATTAATGGAAGTATAATATGGAGTATGTATAGAATAAAACTAGCTACTCTGTGTGGGCTGCTTTTAAATGGTCATATGGTGCAATACATACGATCAAACTTCTCTGTAATATCGTTTGTTTGTCCAAATTAAAAAAAAAAGTTAGTATTGTATAGAGAATATGTAATAGAACATAAGATTAAAAGTTGGTTCCAAGAAGCTATATTGTTACAATGAAATCTATATAT</genome_strand>
        <mrna_strand>TATTATTACTGTTTAATAGCCATTTTTAAACATCTTCTTTTTCAGAATTGCATTTGCATGGCCACTAATTTACAGAAACGTGGACTGGTAAGCTTGGGGAAACGATTTGTGAACCAGATAACTTATTCAACTTCTCGAAATTCTGCCAACTCATCATCTACTGCGCTCTCTGGCAG.................................................................................................................................................................................................................................................................................................................................................................................................GAATGTGGTGCACACGTCAGTGTATGACAAGAATATAGAGGAATATGTGTCATCGTGGGTACCTGATGAAATAATCGAGGTAGAATCGGACAAATACAAGTACTGGACTCCTCATCCCCAAACAGGGGTGTTTGGGCCAGCTACTGATCACATTATAAAATATGGTTCTCAATTCTCCACGGTAGATTCTGTGTTGGAACAAAAGACATTTTTTCGTGATTTCGAGGATCTGGAGAAGCCTAGTTATCCTTAAGTTTCAGAAAACATCACAACAGAAAATACTACTAGCAGGGAAGGTGAAAGAGGTGTTTCGTTTGTTGTGTTCTATGAATATGTGATATGTTTAGTTAATTAATGGAAGTATAATATGGAGTATGTATAGAATAAAACTAGCTACTCTGTGTGGGCTGCTTTTAAATGGTCATATGGTGCAATACATACGATCAAACTTCTCTGTAATATCGTTTGTTTGTCCAAATT-AAAAAAAAAGTTAGTATTGTATAGAGAATATGTAATAGAACATAAGATTAAAAGTTGGTTCCAAGAAGCTATATTGTTACAATGAAATCTATATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E719791" ref_strand="+" ref_description="SGN-E719791 [FC08DE11]">
      <seq>gatacttttctcttcttataattattagctcataatttacttattattactgtttaatagccatttttaaacatcttctttttcagaattgcatttgcatggccactaatttacagaaacgtggactggtaagcttggggaaacgatttgtgaaccagataacttattcaacttctcgaaattctgccaactcatcatctactgcgctctctggcaggaatgtggtgcacacgtcagtgtatgacaagaatatagaggaatatgtgtcatcgtgggtacctgatgaaataatcgaggtagaatcggacaaatacaagtactggactcctcatccccaaacaggggtgtttgggccagctactgatcacattataaaatatggttctcaattctccacggtagattctgtgttggaacaaaagacattttttcgtgatttcgaggatctggagaagcctagttatccttaagtttcagaaaacatcacaacagaaaatactactagcagggaaggtgaaagaggtgtttcgtttgttgtgttctatgaatatgtgatatgtttagttaattaatggaagtataatatggagtatgtatagaataaaactagctactctgtgtgggctgcttttaaatggtcatatggtgcaatacatacgatcaaacttctctgtaatatcgtttgtttgtccaaattaaaaaaaaaagttagtattgtatagagaatatgtaatagaacataagattaaaagttggttccaagaagctatattgttacaatgaattctatataaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0113N10.1" temp_strand="-" temp_description="C06SLm0113N10.1  AC219227.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0113N10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11886" stop="10101"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11587" g_stop="11371" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="217" r_length="217" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11370" i_stop="10986" i_length="385">
            <donor d_prob="0.848" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10985" g_stop="10411" g_length="575"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="792" r_length="575" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="793" polyA_stop="823"/>
      <MATCH_line gen_id="C06SLm0113N10.1" gen_strand="-" ref_id="SGN-E719791" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>792</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0113N10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E719791" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11587" e_stop="11371"/>
          <exon e_start="10985" e_stop="10411"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATACTTTTCTCTTCTTATAATTATTAGCTCATAATTTACTTATTATTACTGTTTAATAGCCATTTTTAAACATCTTCTTTTTCAGAATTGCATTTGCATGGCCACTAATTTACAGAAACGTGGACTGGTAAGCTTGGGGAAACGATTTGTGAACCAGATAACTTATTCAACTTCTCGAAATTCTGCCAACTCATCATCTACTGCGCTCTCTGGCAGGTATACTCTGAACCAGCAGTGGCTCAAGCATATTAGTGGCCTAAAACAAAAATAAAACAAGCTTTAAATTTGAATTGTTAATAACTTTAATATAGTTGATTTCTTTTAGTTTTTAATTAATAATATAACCATTCTTATTTTTCATGAGATATAATACTCCAAATATGTCATATTTCTTCTAATCTGAATTCTGAATTCTTATAAACATCAACTTGTACTATTATGGATTAATACTTATTTATACGTATAAAATAAAATTTTGATTATGGTTACTAAGTTCTACCTTACCCGAACCTGTAACTTTCTCTCTAGCTCTGTCCTTGATCAGTTCGAGTTAATTACTTTCAATTTGTTTTTTTTTTAAATCTAATTATGTTATGTGCAGGAATGTGGTGCACACGTCAGTGTATGACAAGAATATAGAGGAATATGTGTCATCGTGGGTACCTGATGAAATAATCGAGGTAGAATCGGACAAATACAAGTACTGGACTCCTCATCCCCAAACAGGGGTGTTTGGGCCAGCTACTGATCACATTATAAAATATGGTTCTCAATTCTCCACGGTAGATTCTGTGTTGGAACAAAAGACATTTTTTCGTGATTTCGAGGATCTGGAGAAGCCTAGTTATCCTTAAGTTTCAGAAAACATCACAACAGAAAATACTACTAGCAGGGAAGGTGAAAGAGGTGTTTCGTTTGTTGTGTTCTATGAATATGTGATATGTTTAGTTAATTAATGGAAGTATAATATGGAGTATGTATAGAATAAAACTAGCTACTCTGTGTGGGCTGCTTTTAAATGGTCATATGGTGCAATACATACGATCAAACTTCTCTGTAATATCGTTTGTTTGTCCAAATTAAAAAAAAAAGTTAGTATTGTATAGAGAATATGTAATAGAACATAAGATTAAAAGTTGGTTCCAAGAAGCTATATTGTTACAATGAAATCTATAT</genome_strand>
        <mrna_strand>GATACTTTTCTCTTCTTATAATTATTAGCTCATAATTTACTTATTATTACTGTTTAATAGCCATTTTTAAACATCTTCTTTTTCAGAATTGCATTTGCATGGCCACTAATTTACAGAAACGTGGACTGGTAAGCTTGGGGAAACGATTTGTGAACCAGATAACTTATTCAACTTCTCGAAATTCTGCCAACTCATCATCTACTGCGCTCTCTGGCAG.................................................................................................................................................................................................................................................................................................................................................................................................GAATGTGGTGCACACGTCAGTGTATGACAAGAATATAGAGGAATATGTGTCATCGTGGGTACCTGATGAAATAATCGAGGTAGAATCGGACAAATACAAGTACTGGACTCCTCATCCCCAAACAGGGGTGTTTGGGCCAGCTACTGATCACATTATAAAATATGGTTCTCAATTCTCCACGGTAGATTCTGTGTTGGAACAAAAGACATTTTTTCGTGATTTCGAGGATCTGGAGAAGCCTAGTTATCCTTAAGTTTCAGAAAACATCACAACAGAAAATACTACTAGCAGGGAAGGTGAAAGAGGTGTTTCGTTTGTTGTGTTCTATGAATATGTGATATGTTTAGTTAATTAATGGAAGTATAATATGGAGTATGTATAGAATAAAACTAGCTACTCTGTGTGGGCTGCTTTTAAATGGTCATATGGTGCAATACATACGATCAAACTTCTCTGTAATATCGTTTGTTTGTCCAAATTAAAAAAAAAAGTTAGTATTGTATAGAGAATATGTAATAGAACATAAGATTAAAAGTTGGTTCCAAGAAGCTATATTGTTACAATGAATTCTATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E723381" ref_strand="+" ref_description="SGN-E723381 [FC20BC08]">
      <seq>gatacttttctcttcttataattattagctcataatttacttattattactgtttaatagccatttttaaacatcttctttttcagaattgcatttgcatggccactaatttacagaaacgtggactggtaagcttggggaaacgatttgtgaaccagataacttattcaacttctcgaaattctgccaactcatcatctactgcgctctctggcaggaatgtggtgcacacgtcagtgtatgacaagaatatagaggaatatgtgtcatcgtgggtacctgatgaaataatcgaggtagaatcggacaaatacaagtactggactcctcatccccaaacaggggtgtttgggccagctactgatcacattataaaatatggttctcaattctccacggtagattctgtgttggaacaaaagacattttttcgtgatttcgaggatctggagaagcctagttatccttaagtttcagaaaacatcacaacagaaaatactactagcagggaaggtgaaagaggtgtttcgtttgttgtgttctatgaatatgtgatatgtttagttaattaatggaagtataatatggagtatgtatagaataaaactagctactctgtgtgggctgcttttaaatggtcatatggtgcaatacatacgatcaaacttctctgtaatatcgtttgtttgtccaaattaaaaaaaaaagttagtattgtatagagaatatgtaatagaacataagattaaaagttggttccaaaaagctatattgttacaatgaaatcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0113N10.1" temp_strand="-" temp_description="C06SLm0113N10.1  AC219227.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0113N10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11886" stop="10114"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11587" g_stop="11371" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="217" r_length="217" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11370" i_stop="10986" i_length="385">
            <donor d_prob="0.848" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10985" g_stop="10414" g_length="572"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="789" r_length="572" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0113N10.1" gen_strand="-" ref_id="SGN-E723381" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>789</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0113N10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E723381" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11587" e_stop="11371"/>
          <exon e_start="10985" e_stop="10414"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATACTTTTCTCTTCTTATAATTATTAGCTCATAATTTACTTATTATTACTGTTTAATAGCCATTTTTAAACATCTTCTTTTTCAGAATTGCATTTGCATGGCCACTAATTTACAGAAACGTGGACTGGTAAGCTTGGGGAAACGATTTGTGAACCAGATAACTTATTCAACTTCTCGAAATTCTGCCAACTCATCATCTACTGCGCTCTCTGGCAGGTATACTCTGAACCAGCAGTGGCTCAAGCATATTAGTGGCCTAAAACAAAAATAAAACAAGCTTTAAATTTGAATTGTTAATAACTTTAATATAGTTGATTTCTTTTAGTTTTTAATTAATAATATAACCATTCTTATTTTTCATGAGATATAATACTCCAAATATGTCATATTTCTTCTAATCTGAATTCTGAATTCTTATAAACATCAACTTGTACTATTATGGATTAATACTTATTTATACGTATAAAATAAAATTTTGATTATGGTTACTAAGTTCTACCTTACCCGAACCTGTAACTTTCTCTCTAGCTCTGTCCTTGATCAGTTCGAGTTAATTACTTTCAATTTGTTTTTTTTTTAAATCTAATTATGTTATGTGCAGGAATGTGGTGCACACGTCAGTGTATGACAAGAATATAGAGGAATATGTGTCATCGTGGGTACCTGATGAAATAATCGAGGTAGAATCGGACAAATACAAGTACTGGACTCCTCATCCCCAAACAGGGGTGTTTGGGCCAGCTACTGATCACATTATAAAATATGGTTCTCAATTCTCCACGGTAGATTCTGTGTTGGAACAAAAGACATTTTTTCGTGATTTCGAGGATCTGGAGAAGCCTAGTTATCCTTAAGTTTCAGAAAACATCACAACAGAAAATACTACTAGCAGGGAAGGTGAAAGAGGTGTTTCGTTTGTTGTGTTCTATGAATATGTGATATGTTTAGTTAATTAATGGAAGTATAATATGGAGTATGTATAGAATAAAACTAGCTACTCTGTGTGGGCTGCTTTTAAATGGTCATATGGTGCAATACATACGATCAAACTTCTCTGTAATATCGTTTGTTTGTCCAAATTAAAAAAAAAAGTTAGTATTGTATAGAGAATATGTAATAGAACATAAGATTAAAAGTTGGTTCCAAGAAGCTATATTGTTACAATGAAATCTA</genome_strand>
        <mrna_strand>GATACTTTTCTCTTCTTATAATTATTAGCTCATAATTTACTTATTATTACTGTTTAATAGCCATTTTTAAACATCTTCTTTTTCAGAATTGCATTTGCATGGCCACTAATTTACAGAAACGTGGACTGGTAAGCTTGGGGAAACGATTTGTGAACCAGATAACTTATTCAACTTCTCGAAATTCTGCCAACTCATCATCTACTGCGCTCTCTGGCAG.................................................................................................................................................................................................................................................................................................................................................................................................GAATGTGGTGCACACGTCAGTGTATGACAAGAATATAGAGGAATATGTGTCATCGTGGGTACCTGATGAAATAATCGAGGTAGAATCGGACAAATACAAGTACTGGACTCCTCATCCCCAAACAGGGGTGTTTGGGCCAGCTACTGATCACATTATAAAATATGGTTCTCAATTCTCCACGGTAGATTCTGTGTTGGAACAAAAGACATTTTTTCGTGATTTCGAGGATCTGGAGAAGCCTAGTTATCCTTAAGTTTCAGAAAACATCACAACAGAAAATACTACTAGCAGGGAAGGTGAAAGAGGTGTTTCGTTTGTTGTGTTCTATGAATATGTGATATGTTTAGTTAATTAATGGAAGTATAATATGGAGTATGTATAGAATAAAACTAGCTACTCTGTGTGGGCTGCTTTTAAATGGTCATATGGTGCAATACATACGATCAAACTTCTCTGTAATATCGTTTGTTTGTCCAAATTAAAAAAAAAAGTTAGTATTGTATAGAGAATATGTAATAGAACATAAGATTAAAAGTTGGTTCCAAAAAGCTATATTGTTACAATGAAATCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E260006" ref_strand="+" ref_description="SGN-E260006 [cLEG-51-P10]">
      <seq>taacaatatagcttcttggaaccaacttttaatcttatgttctattacatattctctatacaatactaacttttttttttaatttggacaaacaaacgatattacagagaagtttgatcgtatgtattgcaccatatgaccatttaaaagcagcccacacagagtagctagttttattctatacatactccatattatacttccattaattaactaaacatatcacatattcatagaacacaacaaacgaaacacctctttcaccttccctgctagtagtattttctgttgtgatgttttctgaaacttaaggataactaggcttctccagatcctcgaaatcacgaaaaaatgtcttttgttccaacacagaatctaccgtggagaattgagaaccatattttataatgtgatcagtagctggcccaaacacccctgtttggggatgaggagtccagtacttgtatttgtccgattctacctcgattatttctcgaaacccccgccccttcgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0113N10.1" temp_strand="+" temp_description="C06SLm0113N10.1  AC219227.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0113N10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="10126" stop="11232"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10426" g_stop="10918" g_length="493"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="493" r_length="493" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0113N10.1" gen_strand="+" ref_id="SGN-E260006" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>493</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0113N10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E260006" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10426" e_stop="10918"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACAATATAGCTTCTTGGAACCAACTTTTAATCTTATGTTCTATTACATATTCTCTATACAATACTAACTTTTTTTTTTAATTTGGACAAACAAACGATATTACAGAGAAGTTTGATCGTATGTATTGCACCATATGACCATTTAAAAGCAGCCCACACAGAGTAGCTAGTTTTATTCTATACATACTCCATATTATACTTCCATTAATTAACTAAACATATCACATATTCATAGAACACAACAAACGAAACACCTCTTTCACCTTCCCTGCTAGTAGTATTTTCTGTTGTGATGTTTTCTGAAACTTAAGGATAACTAGGCTTCTCCAGATCCTCGAAATCACGAAAAAATGTCTTTTGTTCCAACACAGAATCTACCGTGGAGAATTGAGAACCATATTTTATAATGTGATCAGTAGCTGGCCCAAACACCCCTGTTTGGGGATGAGGAGTCCAGTACTTGTATTTGTCCGATTCTACCTCGATTATTTC</genome_strand>
        <mrna_strand>TAACAATATAGCTTCTTGGAACCAACTTTTAATCTTATGTTCTATTACATATTCTCTATACAATACTAACTTTTTTTTTTAATTTGGACAAACAAACGATATTACAGAGAAGTTTGATCGTATGTATTGCACCATATGACCATTTAAAAGCAGCCCACACAGAGTAGCTAGTTTTATTCTATACATACTCCATATTATACTTCCATTAATTAACTAAACATATCACATATTCATAGAACACAACAAACGAAACACCTCTTTCACCTTCCCTGCTAGTAGTATTTTCTGTTGTGATGTTTTCTGAAACTTAAGGATAACTAGGCTTCTCCAGATCCTCGAAATCACGAAAAAATGTCTTTTGTTCCAACACAGAATCTACCGTGGAGAATTGAGAACCATATTTTATAATGTGATCAGTAGCTGGCCCAAACACCCCTGTTTGGGGATGAGGAGTCCAGTACTTGTATTTGTCCGATTCTACCTCGATTATTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E716094" ref_strand="+" ref_description="SGN-E716094 [FB16AD10]">
      <seq>gataaacagatcgctataacaattgcatttgcatggccactaatttacagaaacgtggactggtaagcttggggaaacgatttgtgaaccagataacttattcaacttctcgaaattctgccaactcatcatctactgcgctctctggcaggaatgtggtgcacacgtcagtgtatgacaagaatatagaggaatatgtgtcatcgtgggtacctgatgaaataatcgaggtagaatcggacaaatacaagtactggactcctcatccccaaacatgggtgtttgggccagctactgatcacattataaaatatggttctcaattctccacggtagattctgtgttggaacaaaagacattttttcgtgatttcgaggatctggagaagcctagttatccttaagtttcagaaaacatcacaacagaaaatactactagcagggaaggtgaaagaggtgtttcgtttgttgtgttctatgaatatgtgatatgtttagttaattaatggaagtataatatggagtatgtatagaataaaactagctactctgtgtgggctgcttttaaatggtcatatggtgcaatacatacgatcaaacttctctgtaatatcgtttgtttgtccaaattaaaaaaaaaagttagtattgtatagagaatatgtaatagaacataagattaaaagttggttccaagaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0113N10.1" temp_strand="-" temp_description="C06SLm0113N10.1  AC219227.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0113N10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11908" stop="10138"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11608" g_stop="11589" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="0.950"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11588" i_stop="11502" i_length="87">
            <donor d_prob="0.900" d_score="0.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11501" g_stop="11371" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="151" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11370" i_stop="10986" i_length="385">
            <donor d_prob="0.848" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="10985" g_stop="10430" g_length="556"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="707" r_length="556" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0113N10.1" gen_strand="-" ref_id="SGN-E716094" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>707</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0113N10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E716094" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11608" e_stop="11589"/>
          <exon e_start="11501" e_stop="11371"/>
          <exon e_start="10985" e_stop="10430"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAAACAGATCGCTATAACGTATACTTTTCTCTTCTTATAATTATTAGCTCATAATTTACTTATTATTACTGTTTAATAGCCATTTTTAAACATCTTCTTTTTCAGAATTGCATTTGCATGGCCACTAATTTACAGAAACGTGGACTGGTAAGCTTGGGGAAACGATTTGTGAACCAGATAACTTATTCAACTTCTCGAAATTCTGCCAACTCATCATCTACTGCGCTCTCTGGCAGGTATACTCTGAACCAGCAGTGGCTCAAGCATATTAGTGGCCTAAAACAAAAATAAAACAAGCTTTAAATTTGAATTGTTAATAACTTTAATATAGTTGATTTCTTTTAGTTTTTAATTAATAATATAACCATTCTTATTTTTCATGAGATATAATACTCCAAATATGTCATATTTCTTCTAATCTGAATTCTGAATTCTTATAAACATCAACTTGTACTATTATGGATTAATACTTATTTATACGTATAAAATAAAATTTTGATTATGGTTACTAAGTTCTACCTTACCCGAACCTGTAACTTTCTCTCTAGCTCTGTCCTTGATCAGTTCGAGTTAATTACTTTCAATTTGTTTTTTTTTTAAATCTAATTATGTTATGTGCAGGAATGTGGTGCACACGTCAGTGTATGACAAGAATATAGAGGAATATGTGTCATCGTGGGTACCTGATGAAATAATCGAGGTAGAATCGGACAAATACAAGTACTGGACTCCTCATCCCCAAACAGGGGTGTTTGGGCCAGCTACTGATCACATTATAAAATATGGTTCTCAATTCTCCACGGTAGATTCTGTGTTGGAACAAAAGACATTTTTTCGTGATTTCGAGGATCTGGAGAAGCCTAGTTATCCTTAAGTTTCAGAAAACATCACAACAGAAAATACTACTAGCAGGGAAGGTGAAAGAGGTGTTTCGTTTGTTGTGTTCTATGAATATGTGATATGTTTAGTTAATTAATGGAAGTATAATATGGAGTATGTATAGAATAAAACTAGCTACTCTGTGTGGGCTGCTTTTAAATGGTCATATGGTGCAATACATACGATCAAACTTCTCTGTAATATCGTTTGTTTGTCCAAATTAAAAAAAAAAGTTAGTATTGTATAGAGAATATGTAATAGAACATAAGATTAAAAGTTGGTTCCAAGAAGCTATATT</genome_strand>
        <mrna_strand>GATAAACAGATCGCTATAAC.......................................................................................AATTGCATTTGCATGGCCACTAATTTACAGAAACGTGGACTGGTAAGCTTGGGGAAACGATTTGTGAACCAGATAACTTATTCAACTTCTCGAAATTCTGCCAACTCATCATCTACTGCGCTCTCTGGCAG.................................................................................................................................................................................................................................................................................................................................................................................................GAATGTGGTGCACACGTCAGTGTATGACAAGAATATAGAGGAATATGTGTCATCGTGGGTACCTGATGAAATAATCGAGGTAGAATCGGACAAATACAAGTACTGGACTCCTCATCCCCAAACATGGGTGTTTGGGCCAGCTACTGATCACATTATAAAATATGGTTCTCAATTCTCCACGGTAGATTCTGTGTTGGAACAAAAGACATTTTTTCGTGATTTCGAGGATCTGGAGAAGCCTAGTTATCCTTAAGTTTCAGAAAACATCACAACAGAAAATACTACTAGCAGGGAAGGTGAAAGAGGTGTTTCGTTTGTTGTGTTCTATGAATATGTGATATGTTTAGTTAATTAATGGAAGTATAATATGGAGTATGTATAGAATAAAACTAGCTACTCTGTGTGGGCTGCTTTTAAATGGTCATATGGTGCAATACATACGATCAAACTTCTCTGTAATATCGTTTGTTTGTCCAAATTAAAAAAAAAAGTTAGTATTGTATAGAGAATATGTAATAGAACATAAGATTAAAAGTTGGTTCCAAGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E713572" ref_strand="+" ref_description="SGN-E713572 [FB09AA08]">
      <seq>gataaacagatcgctataacaattgcatttgcatggccactaatttacagaaacgtggactggtaagcttggggaaacgatttgtgaaccagataacttattcaacttctcgaaattctgccaactcatcatctactgcgctctctggcaggaatgtggtgcacacgtcagtgtatgacaagaatatagaggaatatgtgtcatcgtgggtacctgatgaaataatcgaggtagaatcggacaaatacaagtactggactcctcatccccaaacaggggtgtttgggccagctactgatcacattataaaatatggttctcaattctccacggtagattctgtgttggaacaaaagacattttttcgtgatttcgaggatctggagaagcctagttatccttaagtttcagaaaacatcacaacagaaaatactactagcagggaaggtgaaagaggtgtttcgtttgttgtgttctatgaatatgtgatatgtttagttaattaatggaagtataatatggagtatgtatagaataaaactagctactctgtgtgggctgcttttaaatggtcatatggtgcaatacatacgatcaaacttctctgtaatatcgtttgtttgtccaaattaaaaaaaaaagttagtattgtatagagaatatgtaatagaacataagattaaaagttggttccaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0113N10.1" temp_strand="-" temp_description="C06SLm0113N10.1  AC219227.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0113N10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11908" stop="10138"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11608" g_stop="11589" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="0.950"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11588" i_stop="11502" i_length="87">
            <donor d_prob="0.900" d_score="0.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11501" g_stop="11371" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="151" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11370" i_stop="10986" i_length="385">
            <donor d_prob="0.848" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="10985" g_stop="10433" g_length="553"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="704" r_length="553" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0113N10.1" gen_strand="-" ref_id="SGN-E713572" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>704</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0113N10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E713572" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11608" e_stop="11589"/>
          <exon e_start="11501" e_stop="11371"/>
          <exon e_start="10985" e_stop="10433"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAAACAGATCGCTATAACGTATACTTTTCTCTTCTTATAATTATTAGCTCATAATTTACTTATTATTACTGTTTAATAGCCATTTTTAAACATCTTCTTTTTCAGAATTGCATTTGCATGGCCACTAATTTACAGAAACGTGGACTGGTAAGCTTGGGGAAACGATTTGTGAACCAGATAACTTATTCAACTTCTCGAAATTCTGCCAACTCATCATCTACTGCGCTCTCTGGCAGGTATACTCTGAACCAGCAGTGGCTCAAGCATATTAGTGGCCTAAAACAAAAATAAAACAAGCTTTAAATTTGAATTGTTAATAACTTTAATATAGTTGATTTCTTTTAGTTTTTAATTAATAATATAACCATTCTTATTTTTCATGAGATATAATACTCCAAATATGTCATATTTCTTCTAATCTGAATTCTGAATTCTTATAAACATCAACTTGTACTATTATGGATTAATACTTATTTATACGTATAAAATAAAATTTTGATTATGGTTACTAAGTTCTACCTTACCCGAACCTGTAACTTTCTCTCTAGCTCTGTCCTTGATCAGTTCGAGTTAATTACTTTCAATTTGTTTTTTTTTTAAATCTAATTATGTTATGTGCAGGAATGTGGTGCACACGTCAGTGTATGACAAGAATATAGAGGAATATGTGTCATCGTGGGTACCTGATGAAATAATCGAGGTAGAATCGGACAAATACAAGTACTGGACTCCTCATCCCCAAACAGGGGTGTTTGGGCCAGCTACTGATCACATTATAAAATATGGTTCTCAATTCTCCACGGTAGATTCTGTGTTGGAACAAAAGACATTTTTTCGTGATTTCGAGGATCTGGAGAAGCCTAGTTATCCTTAAGTTTCAGAAAACATCACAACAGAAAATACTACTAGCAGGGAAGGTGAAAGAGGTGTTTCGTTTGTTGTGTTCTATGAATATGTGATATGTTTAGTTAATTAATGGAAGTATAATATGGAGTATGTATAGAATAAAACTAGCTACTCTGTGTGGGCTGCTTTTAAATGGTCATATGGTGCAATACATACGATCAAACTTCTCTGTAATATCGTTTGTTTGTCCAAATTAAAAAAAAAAGTTAGTATTGTATAGAGAATATGTAATAGAACATAAGATTAAAAGTTGGTTCCAAGAAGCTAT</genome_strand>
        <mrna_strand>GATAAACAGATCGCTATAAC.......................................................................................AATTGCATTTGCATGGCCACTAATTTACAGAAACGTGGACTGGTAAGCTTGGGGAAACGATTTGTGAACCAGATAACTTATTCAACTTCTCGAAATTCTGCCAACTCATCATCTACTGCGCTCTCTGGCAG.................................................................................................................................................................................................................................................................................................................................................................................................GAATGTGGTGCACACGTCAGTGTATGACAAGAATATAGAGGAATATGTGTCATCGTGGGTACCTGATGAAATAATCGAGGTAGAATCGGACAAATACAAGTACTGGACTCCTCATCCCCAAACAGGGGTGTTTGGGCCAGCTACTGATCACATTATAAAATATGGTTCTCAATTCTCCACGGTAGATTCTGTGTTGGAACAAAAGACATTTTTTCGTGATTTCGAGGATCTGGAGAAGCCTAGTTATCCTTAAGTTTCAGAAAACATCACAACAGAAAATACTACTAGCAGGGAAGGTGAAAGAGGTGTTTCGTTTGTTGTGTTCTATGAATATGTGATATGTTTAGTTAATTAATGGAAGTATAATATGGAGTATGTATAGAATAAAACTAGCTACTCTGTGTGGGCTGCTTTTAAATGGTCATATGGTGCAATACATACGATCAAACTTCTCTGTAATATCGTTTGTTTGTCCAAATTAAAAAAAAAAGTTAGTATTGTATAGAGAATATGTAATAGAACATAAGATTAAAAGTTGGTTCCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E718075" ref_strand="+" ref_description="SGN-E718075 [FC03CD09]">
      <seq>cggccgattgacttttctcttcttataattattagctcataatttacttattattactgtttaatagccatttttaaacatcttctttttcagaattgcatttgcatggccactaatttacagaaacgtggactggtaagcttggggaaacgatttgtgaaccagataacttattcaacttctcgaaattctgccaactcatcatctactgcgctctctggcaggaatgtggtgcacacgtcagtgtatgacaagaatatagaggaatatgtgtcatcgtgggtacctgatgaaataatcgaggtagaatcggacaaatacaagtactggactcctcatccccaaacaggggtgtttgggccagctactgatcacattataaaatatggttctcaattctccacggtagattctgtgttggaacaaaagacattttttcgtgatttcgaggatctggagaagcctagttatccttaagtttcagaaaacatcacaacagaaaatactactagcagggaaggtgaaagaggtgtttcgtttgttgtgttctatgaatatgtgatatgtttagttaattaatggaagtataatatggagtatgtatagaataaaactagctactctgtgtgggctgcttttaaatggtcatatggtgcaatacatacgatcaaacttctctgtaatatcgtttgtttgtccaaattaaaaaaaaaagttagtattgtatagagaatatgtaatagaacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0113N10.1" temp_strand="-" temp_description="C06SLm0113N10.1  AC219227.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0113N10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11889" stop="10162"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11582" g_stop="11371" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="224" r_length="212" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11370" i_stop="10986" i_length="385">
            <donor d_prob="0.848" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10985" g_stop="10462" g_length="524"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="748" r_length="524" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0113N10.1" gen_strand="-" ref_id="SGN-E718075" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>736</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0113N10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E718075" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11582" e_stop="11371"/>
          <exon e_start="10985" e_stop="10462"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCTCTTCTTATAATTATTAGCTCATAATTTACTTATTATTACTGTTTAATAGCCATTTTTAAACATCTTCTTTTTCAGAATTGCATTTGCATGGCCACTAATTTACAGAAACGTGGACTGGTAAGCTTGGGGAAACGATTTGTGAACCAGATAACTTATTCAACTTCTCGAAATTCTGCCAACTCATCATCTACTGCGCTCTCTGGCAGGTATACTCTGAACCAGCAGTGGCTCAAGCATATTAGTGGCCTAAAACAAAAATAAAACAAGCTTTAAATTTGAATTGTTAATAACTTTAATATAGTTGATTTCTTTTAGTTTTTAATTAATAATATAACCATTCTTATTTTTCATGAGATATAATACTCCAAATATGTCATATTTCTTCTAATCTGAATTCTGAATTCTTATAAACATCAACTTGTACTATTATGGATTAATACTTATTTATACGTATAAAATAAAATTTTGATTATGGTTACTAAGTTCTACCTTACCCGAACCTGTAACTTTCTCTCTAGCTCTGTCCTTGATCAGTTCGAGTTAATTACTTTCAATTTGTTTTTTTTTTAAATCTAATTATGTTATGTGCAGGAATGTGGTGCACACGTCAGTGTATGACAAGAATATAGAGGAATATGTGTCATCGTGGGTACCTGATGAAATAATCGAGGTAGAATCGGACAAATACAAGTACTGGACTCCTCATCCCCAAACAGGGGTGTTTGGGCCAGCTACTGATCACATTATAAAATATGGTTCTCAATTCTCCACGGTAGATTCTGTGTTGGAACAAAAGACATTTTTTCGTGATTTCGAGGATCTGGAGAAGCCTAGTTATCCTTAAGTTTCAGAAAACATCACAACAGAAAATACTACTAGCAGGGAAGGTGAAAGAGGTGTTTCGTTTGTTGTGTTCTATGAATATGTGATATGTTTAGTTAATTAATGGAAGTATAATATGGAGTATGTATAGAATAAAACTAGCTACTCTGTGTGGGCTGCTTTTAAATGGTCATATGGTGCAATACATACGATCAAACTTCTCTGTAATATCGTTTGTTTGTCCAAATTAAAAAAAAAAGTTAGTATTGTATAGAGAATATGTAATAGAACAT</genome_strand>
        <mrna_strand>TTTTCTCTTCTTATAATTATTAGCTCATAATTTACTTATTATTACTGTTTAATAGCCATTTTTAAACATCTTCTTTTTCAGAATTGCATTTGCATGGCCACTAATTTACAGAAACGTGGACTGGTAAGCTTGGGGAAACGATTTGTGAACCAGATAACTTATTCAACTTCTCGAAATTCTGCCAACTCATCATCTACTGCGCTCTCTGGCAG.................................................................................................................................................................................................................................................................................................................................................................................................GAATGTGGTGCACACGTCAGTGTATGACAAGAATATAGAGGAATATGTGTCATCGTGGGTACCTGATGAAATAATCGAGGTAGAATCGGACAAATACAAGTACTGGACTCCTCATCCCCAAACAGGGGTGTTTGGGCCAGCTACTGATCACATTATAAAATATGGTTCTCAATTCTCCACGGTAGATTCTGTGTTGGAACAAAAGACATTTTTTCGTGATTTCGAGGATCTGGAGAAGCCTAGTTATCCTTAAGTTTCAGAAAACATCACAACAGAAAATACTACTAGCAGGGAAGGTGAAAGAGGTGTTTCGTTTGTTGTGTTCTATGAATATGTGATATGTTTAGTTAATTAATGGAAGTATAATATGGAGTATGTATAGAATAAAACTAGCTACTCTGTGTGGGCTGCTTTTAAATGGTCATATGGTGCAATACATACGATCAAACTTCTCTGTAATATCGTTTGTTTGTCCAAATTAAAAAAAAAAGTTAGTATTGTATAGAGAATATGTAATAGAACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E369448" ref_strand="+" ref_description="SGN-E369448 [TUS-23-O15]">
      <seq>ttaatagccatttttaaacatcttctttttcagaattgcatttgcatggccactaatttacagaaacgtggactggtaagcttggggaaacgatttgtgaaccagataacttattcaacttctcgaaattctgccaactcatcatctactgcgctctctggcaggaatgtggtgcacacgtcagtgtatgacaagaatatagaggaatatgtgtcatcgtgggtacctgatgaaataatcgaggtagaatcggacaaatacaagtactggactcctcatccccaaacaggggtgtttgggccagctactgatcacattataaaatatggttctcaattctccacggtagattctgtgttggaacaaaagacattttttcgtgatttcgaggatctggagaagcctagttatccttaagtttcagaaaacatcacaacagaaaatactactagcagggaaggtgaaagaggtgtttcgtttgttgtgttctatgaatatgtgatatgtttagttaattaatggaagtataatatggagtatgtatagaataaaactagctactctgtgtgggctgcttttaaatggtcatatggtgcaatacatacgatcaaacttctctgtaatatcgtttgtttgtccaaattaaaaaaaaaagttagtattgtatagagaatatgtaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0113N10.1" temp_strand="-" temp_description="C06SLm0113N10.1  AC219227.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0113N10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11834" stop="10169"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11534" g_stop="11371" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="164" r_length="164" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11370" i_stop="10986" i_length="385">
            <donor d_prob="0.848" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10985" g_stop="10469" g_length="517"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="681" r_length="517" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0113N10.1" gen_strand="-" ref_id="SGN-E369448" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>681</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0113N10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E369448" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11534" e_stop="11371"/>
          <exon e_start="10985" e_stop="10469"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAATAGCCATTTTTAAACATCTTCTTTTTCAGAATTGCATTTGCATGGCCACTAATTTACAGAAACGTGGACTGGTAAGCTTGGGGAAACGATTTGTGAACCAGATAACTTATTCAACTTCTCGAAATTCTGCCAACTCATCATCTACTGCGCTCTCTGGCAGGTATACTCTGAACCAGCAGTGGCTCAAGCATATTAGTGGCCTAAAACAAAAATAAAACAAGCTTTAAATTTGAATTGTTAATAACTTTAATATAGTTGATTTCTTTTAGTTTTTAATTAATAATATAACCATTCTTATTTTTCATGAGATATAATACTCCAAATATGTCATATTTCTTCTAATCTGAATTCTGAATTCTTATAAACATCAACTTGTACTATTATGGATTAATACTTATTTATACGTATAAAATAAAATTTTGATTATGGTTACTAAGTTCTACCTTACCCGAACCTGTAACTTTCTCTCTAGCTCTGTCCTTGATCAGTTCGAGTTAATTACTTTCAATTTGTTTTTTTTTTAAATCTAATTATGTTATGTGCAGGAATGTGGTGCACACGTCAGTGTATGACAAGAATATAGAGGAATATGTGTCATCGTGGGTACCTGATGAAATAATCGAGGTAGAATCGGACAAATACAAGTACTGGACTCCTCATCCCCAAACAGGGGTGTTTGGGCCAGCTACTGATCACATTATAAAATATGGTTCTCAATTCTCCACGGTAGATTCTGTGTTGGAACAAAAGACATTTTTTCGTGATTTCGAGGATCTGGAGAAGCCTAGTTATCCTTAAGTTTCAGAAAACATCACAACAGAAAATACTACTAGCAGGGAAGGTGAAAGAGGTGTTTCGTTTGTTGTGTTCTATGAATATGTGATATGTTTAGTTAATTAATGGAAGTATAATATGGAGTATGTATAGAATAAAACTAGCTACTCTGTGTGGGCTGCTTTTAAATGGTCATATGGTGCAATACATACGATCAAACTTCTCTGTAATATCGTTTGTTTGTCCAAATTAAAAAAAAAAGTTAGTATTGTATAGAGAATATGTAAT</genome_strand>
        <mrna_strand>TTAATAGCCATTTTTAAACATCTTCTTTTTCAGAATTGCATTTGCATGGCCACTAATTTACAGAAACGTGGACTGGTAAGCTTGGGGAAACGATTTGTGAACCAGATAACTTATTCAACTTCTCGAAATTCTGCCAACTCATCATCTACTGCGCTCTCTGGCAG.................................................................................................................................................................................................................................................................................................................................................................................................GAATGTGGTGCACACGTCAGTGTATGACAAGAATATAGAGGAATATGTGTCATCGTGGGTACCTGATGAAATAATCGAGGTAGAATCGGACAAATACAAGTACTGGACTCCTCATCCCCAAACAGGGGTGTTTGGGCCAGCTACTGATCACATTATAAAATATGGTTCTCAATTCTCCACGGTAGATTCTGTGTTGGAACAAAAGACATTTTTTCGTGATTTCGAGGATCTGGAGAAGCCTAGTTATCCTTAAGTTTCAGAAAACATCACAACAGAAAATACTACTAGCAGGGAAGGTGAAAGAGGTGTTTCGTTTGTTGTGTTCTATGAATATGTGATATGTTTAGTTAATTAATGGAAGTATAATATGGAGTATGTATAGAATAAAACTAGCTACTCTGTGTGGGCTGCTTTTAAATGGTCATATGGTGCAATACATACGATCAAACTTCTCTGTAATATCGTTTGTTTGTCCAAATTAAAAAAAAAAGTTAGTATTGTATAGAGAATATGTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E723595" ref_strand="+" ref_description="SGN-E723595 [FC21AA01]">
      <seq>ggccgaattgacttttctcttcccccctaaaggagctcataatttacttattattactgtttaatccctataaaaaaacatcttctttttcagaattgcatttgcatggccactaatttacagaaacgtggactggtaagcttggggaaacgatttgtgaaccagataacttattcaacttctcgaaattctgccaactcatcatctactgcgctctctggcaggaatgtggtgcacacgtcagtgtatgacaagaatatagaggaatatgtgtcatcgtgggtacctgatgaaataatcgaggtagaatcggacaaatacaagtactggactcctcatccccaaacaggggtgtttgggccagctactgatcacattataaaatatggttctcaattctccacggtagattctgtgttggaacaaaagacattttttcgtgatttcgaggatctggagaagcctagttatccttaagtttcagaaaacatcacaacagaaaatactactagcagggaaggtgaaagaggtgtttcgtttgttgtgttctatgaatatgtgatatgtttagttaattaatggaagtataatatggagtatgtatagaataaaactagctactctgtgtgggctgcttttaaatggtcatatggtgcaatacatacgatcaaacttctctgtaatatcgtttgtttgtccaaattaaaaaaaaaagttagtattgtttagagaatatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0113N10.1" temp_strand="-" temp_description="C06SLm0113N10.1  AC219227.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0113N10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11861" stop="10173"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11559" g_stop="11371" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="224" r_length="189" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11370" i_stop="10986" i_length="385">
            <donor d_prob="0.848" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10985" g_stop="10473" g_length="513"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="737" r_length="513" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0113N10.1" gen_strand="-" ref_id="SGN-E723595" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>702</cumulative_length_of_scored_exons>
        <coverage percentage="0.953" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0113N10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E723595" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11559" e_stop="11371"/>
          <exon e_start="10985" e_stop="10473"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCATAATTTACTTATTATTACTGTTTAATAGCCATTTTTAAACATCTTCTTTTTCAGAATTGCATTTGCATGGCCACTAATTTACAGAAACGTGGACTGGTAAGCTTGGGGAAACGATTTGTGAACCAGATAACTTATTCAACTTCTCGAAATTCTGCCAACTCATCATCTACTGCGCTCTCTGGCAGGTATACTCTGAACCAGCAGTGGCTCAAGCATATTAGTGGCCTAAAACAAAAATAAAACAAGCTTTAAATTTGAATTGTTAATAACTTTAATATAGTTGATTTCTTTTAGTTTTTAATTAATAATATAACCATTCTTATTTTTCATGAGATATAATACTCCAAATATGTCATATTTCTTCTAATCTGAATTCTGAATTCTTATAAACATCAACTTGTACTATTATGGATTAATACTTATTTATACGTATAAAATAAAATTTTGATTATGGTTACTAAGTTCTACCTTACCCGAACCTGTAACTTTCTCTCTAGCTCTGTCCTTGATCAGTTCGAGTTAATTACTTTCAATTTGTTTTTTTTTTAAATCTAATTATGTTATGTGCAGGAATGTGGTGCACACGTCAGTGTATGACAAGAATATAGAGGAATATGTGTCATCGTGGGTACCTGATGAAATAATCGAGGTAGAATCGGACAAATACAAGTACTGGACTCCTCATCCCCAAACAGGGGTGTTTGGGCCAGCTACTGATCACATTATAAAATATGGTTCTCAATTCTCCACGGTAGATTCTGTGTTGGAACAAAAGACATTTTTTCGTGATTTCGAGGATCTGGAGAAGCCTAGTTATCCTTAAGTTTCAGAAAACATCACAACAGAAAATACTACTAGCAGGGAAGGTGAAAGAGGTGTTTCGTTTGTTGTGTTCTATGAATATGTGATATGTTTAGTTAATTAATGGAAGTATAATATGGAGTATGTATAGAATAAAACTAGCTACTCTGTGTGGGCTGCTTTTAAATGGTCATATGGTGCAATACATACGATCAAACTTCTCTGTAATATCGTTTGTTTGTCCAAATTAAAAAAAAAAGTTAGTATTGTATAGAGAATATG</genome_strand>
        <mrna_strand>CTCATAATTTACTTATTATTACTGTTTAATCCCTATAAAAAAACATCTTCTTTTTCAGAATTGCATTTGCATGGCCACTAATTTACAGAAACGTGGACTGGTAAGCTTGGGGAAACGATTTGTGAACCAGATAACTTATTCAACTTCTCGAAATTCTGCCAACTCATCATCTACTGCGCTCTCTGGCAG.................................................................................................................................................................................................................................................................................................................................................................................................GAATGTGGTGCACACGTCAGTGTATGACAAGAATATAGAGGAATATGTGTCATCGTGGGTACCTGATGAAATAATCGAGGTAGAATCGGACAAATACAAGTACTGGACTCCTCATCCCCAAACAGGGGTGTTTGGGCCAGCTACTGATCACATTATAAAATATGGTTCTCAATTCTCCACGGTAGATTCTGTGTTGGAACAAAAGACATTTTTTCGTGATTTCGAGGATCTGGAGAAGCCTAGTTATCCTTAAGTTTCAGAAAACATCACAACAGAAAATACTACTAGCAGGGAAGGTGAAAGAGGTGTTTCGTTTGTTGTGTTCTATGAATATGTGATATGTTTAGTTAATTAATGGAAGTATAATATGGAGTATGTATAGAATAAAACTAGCTACTCTGTGTGGGCTGCTTTTAAATGGTCATATGGTGCAATACATACGATCAAACTTCTCTGTAATATCGTTTGTTTGTCCAAATTAAAAAAAAAAGTTAGTATTGTTTAGAGAATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E257063" ref_strand="+" ref_description="SGN-E257063 [cLEG-44-D21]">
      <seq>aacttttttttttaatttggacaaacaaacgatattacagagaagtttgatcgtatgtattgcaccatatgaccatttaaaagcagcccacacagagtagctagttttattctatacatactccatattatacttgcattaattaactaaacatatcacatattcatagaacacaacagacgaaacacctctttcaccttccctgctagtagtattttctgttgtgatgttttctgaaacttaaggataactaggcttgtccagatcctcgaaatcacgaaaaaatgtctttggttccaacacagaatctaccgtggagaattgagaaccatattttataatgtgatcagtagctggcccaaacacccctgtttggggatgaggagtccagtacttgtatttgtccgattctacctcgagtatttctcgaaccccccgccccttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0113N10.1" temp_strand="+" temp_description="C06SLm0113N10.1  AC219227.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0113N10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="10193" stop="11221"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10493" g_stop="10918" g_length="426"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="426" r_length="426" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0113N10.1" gen_strand="+" ref_id="SGN-E257063" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>426</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0113N10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E257063" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10493" e_stop="10918"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTTTTTTTTTTAATTTGGACAAACAAACGATATTACAGAGAAGTTTGATCGTATGTATTGCACCATATGACCATTTAAAAGCAGCCCACACAGAGTAGCTAGTTTTATTCTATACATACTCCATATTATACTTCCATTAATTAACTAAACATATCACATATTCATAGAACACAACAAACGAAACACCTCTTTCACCTTCCCTGCTAGTAGTATTTTCTGTTGTGATGTTTTCTGAAACTTAAGGATAACTAGGCTTCTCCAGATCCTCGAAATCACGAAAAAATGTCTTTTGTTCCAACACAGAATCTACCGTGGAGAATTGAGAACCATATTTTATAATGTGATCAGTAGCTGGCCCAAACACCCCTGTTTGGGGATGAGGAGTCCAGTACTTGTATTTGTCCGATTCTACCTCGATTATTTC</genome_strand>
        <mrna_strand>AACTTTTTTTTTTAATTTGGACAAACAAACGATATTACAGAGAAGTTTGATCGTATGTATTGCACCATATGACCATTTAAAAGCAGCCCACACAGAGTAGCTAGTTTTATTCTATACATACTCCATATTATACTTGCATTAATTAACTAAACATATCACATATTCATAGAACACAACAGACGAAACACCTCTTTCACCTTCCCTGCTAGTAGTATTTTCTGTTGTGATGTTTTCTGAAACTTAAGGATAACTAGGCTTGTCCAGATCCTCGAAATCACGAAAAAATGTCTTTGGTTCCAACACAGAATCTACCGTGGAGAATTGAGAACCATATTTTATAATGTGATCAGTAGCTGGCCCAAACACCCCTGTTTGGGGATGAGGAGTCCAGTACTTGTATTTGTCCGATTCTACCTCGAGTATTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E721155" ref_strand="+" ref_description="SGN-E721155 [FC12DG08]">
      <seq>tacttttctcttcttataattattagctcataatttacttattattactgtttaatagccatttttaaacatcttctttttcagaattgcatttgcatggccactaatttacagaaacgtggactggtaagcttggggaaacgatttgtgaaccagataacttattcaacttctcgaaattctgccaactcatcatctactgcgctctctggcaggaatgtggtgcacacgtcagtgtatgacaagaatatagaggaatatgtgtcatcgtgggtacctgatgaaataatcgaggtagaatcggacaaatacaagtactggactcctcatccccaaacaggggtgtttgggccagctactgatcacattataaaatatggttctcaattctccacggtagattctgtgttggaacaaaagacattttttcgtgatttcgaggatctggagaagcctagttatccttaagtttcagaaaacatcacaacagaaaatactactagcagggaaggtgaaagaggtgtttcgtttgttgtgttctatgaatatgtgatatgtttagttaattaatggaagtataatatggagtatgtatagaataaaactagctactctgtgtgggctgcttttaaatggtcatatggtgcaatacatacgatcaaacttctctgtaatatcgtttgtttgtccaaattaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0113N10.1" temp_strand="-" temp_description="C06SLm0113N10.1  AC219227.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0113N10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11885" stop="10199"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11585" g_stop="11371" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="215" r_length="215" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11370" i_stop="10986" i_length="385">
            <donor d_prob="0.848" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10985" g_stop="10499" g_length="487"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="702" r_length="487" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0113N10.1" gen_strand="-" ref_id="SGN-E721155" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>702</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0113N10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E721155" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11585" e_stop="11371"/>
          <exon e_start="10985" e_stop="10499"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACTTTTCTCTTCTTATAATTATTAGCTCATAATTTACTTATTATTACTGTTTAATAGCCATTTTTAAACATCTTCTTTTTCAGAATTGCATTTGCATGGCCACTAATTTACAGAAACGTGGACTGGTAAGCTTGGGGAAACGATTTGTGAACCAGATAACTTATTCAACTTCTCGAAATTCTGCCAACTCATCATCTACTGCGCTCTCTGGCAGGTATACTCTGAACCAGCAGTGGCTCAAGCATATTAGTGGCCTAAAACAAAAATAAAACAAGCTTTAAATTTGAATTGTTAATAACTTTAATATAGTTGATTTCTTTTAGTTTTTAATTAATAATATAACCATTCTTATTTTTCATGAGATATAATACTCCAAATATGTCATATTTCTTCTAATCTGAATTCTGAATTCTTATAAACATCAACTTGTACTATTATGGATTAATACTTATTTATACGTATAAAATAAAATTTTGATTATGGTTACTAAGTTCTACCTTACCCGAACCTGTAACTTTCTCTCTAGCTCTGTCCTTGATCAGTTCGAGTTAATTACTTTCAATTTGTTTTTTTTTTAAATCTAATTATGTTATGTGCAGGAATGTGGTGCACACGTCAGTGTATGACAAGAATATAGAGGAATATGTGTCATCGTGGGTACCTGATGAAATAATCGAGGTAGAATCGGACAAATACAAGTACTGGACTCCTCATCCCCAAACAGGGGTGTTTGGGCCAGCTACTGATCACATTATAAAATATGGTTCTCAATTCTCCACGGTAGATTCTGTGTTGGAACAAAAGACATTTTTTCGTGATTTCGAGGATCTGGAGAAGCCTAGTTATCCTTAAGTTTCAGAAAACATCACAACAGAAAATACTACTAGCAGGGAAGGTGAAAGAGGTGTTTCGTTTGTTGTGTTCTATGAATATGTGATATGTTTAGTTAATTAATGGAAGTATAATATGGAGTATGTATAGAATAAAACTAGCTACTCTGTGTGGGCTGCTTTTAAATGGTCATATGGTGCAATACATACGATCAAACTTCTCTGTAATATCGTTTGTTTGTCCAAATTAAAAAAA</genome_strand>
        <mrna_strand>TACTTTTCTCTTCTTATAATTATTAGCTCATAATTTACTTATTATTACTGTTTAATAGCCATTTTTAAACATCTTCTTTTTCAGAATTGCATTTGCATGGCCACTAATTTACAGAAACGTGGACTGGTAAGCTTGGGGAAACGATTTGTGAACCAGATAACTTATTCAACTTCTCGAAATTCTGCCAACTCATCATCTACTGCGCTCTCTGGCAG.................................................................................................................................................................................................................................................................................................................................................................................................GAATGTGGTGCACACGTCAGTGTATGACAAGAATATAGAGGAATATGTGTCATCGTGGGTACCTGATGAAATAATCGAGGTAGAATCGGACAAATACAAGTACTGGACTCCTCATCCCCAAACAGGGGTGTTTGGGCCAGCTACTGATCACATTATAAAATATGGTTCTCAATTCTCCACGGTAGATTCTGTGTTGGAACAAAAGACATTTTTTCGTGATTTCGAGGATCTGGAGAAGCCTAGTTATCCTTAAGTTTCAGAAAACATCACAACAGAAAATACTACTAGCAGGGAAGGTGAAAGAGGTGTTTCGTTTGTTGTGTTCTATGAATATGTGATATGTTTAGTTAATTAATGGAAGTATAATATGGAGTATGTATAGAATAAAACTAGCTACTCTGTGTGGGCTGCTTTTAAATGGTCATATGGTGCAATACATACGATCAAACTTCTCTGTAATATCGTTTGTTTGTCCAAATTAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E274801" ref_strand="+" ref_description="SGN-E274801 [cLEN-13-O12]">
      <seq>ttagctcataatttacttattattactgtttaatagccatttttaaacatcttctttttcagaattgcatttgcatggccactaatttacagaaacgtggactggtaagcttggggaaacgatttgtgaaccagataacttattcaacttctcgaaattctgccaactcatcatctactgcgctctctggcaggaatgtggtgcacacgtcagtgtatgacaagaatatagaggaatatgtgtcatcgtgggtacctgatgaaataatcgaggtagaatcggacaaatacaagtactggactcctcatccccaaacaggggtgtttgggccagctactgatcacattataaaatatggttctcaattctccacggtagattctgtgttggaacaaaagacattttttcgtgatttcgaggatctggagaagcctagttatccttaagtttcagaaaacatcacaacagaaaatactactagcagggaaggtgaaagaggtgtttcgtttgttgtgttctatgaatatgtgatatgtttagttaattaatggaagtataatatggagtatgtatagaataaaactagctactctgtgtgggctgcttttaaatggtcatatggtgcaatacatacgatcaaacttctctgtaatatcgtttgtttgtccaaattaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0113N10.1" temp_strand="-" temp_description="C06SLm0113N10.1  AC219227.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0113N10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11863" stop="10199"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11563" g_stop="11371" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="193" r_length="193" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11370" i_stop="10986" i_length="385">
            <donor d_prob="0.848" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10985" g_stop="10499" g_length="487"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="680" r_length="487" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0113N10.1" gen_strand="-" ref_id="SGN-E274801" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>680</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0113N10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E274801" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11563" e_stop="11371"/>
          <exon e_start="10985" e_stop="10499"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGCTCATAATTTACTTATTATTACTGTTTAATAGCCATTTTTAAACATCTTCTTTTTCAGAATTGCATTTGCATGGCCACTAATTTACAGAAACGTGGACTGGTAAGCTTGGGGAAACGATTTGTGAACCAGATAACTTATTCAACTTCTCGAAATTCTGCCAACTCATCATCTACTGCGCTCTCTGGCAGGTATACTCTGAACCAGCAGTGGCTCAAGCATATTAGTGGCCTAAAACAAAAATAAAACAAGCTTTAAATTTGAATTGTTAATAACTTTAATATAGTTGATTTCTTTTAGTTTTTAATTAATAATATAACCATTCTTATTTTTCATGAGATATAATACTCCAAATATGTCATATTTCTTCTAATCTGAATTCTGAATTCTTATAAACATCAACTTGTACTATTATGGATTAATACTTATTTATACGTATAAAATAAAATTTTGATTATGGTTACTAAGTTCTACCTTACCCGAACCTGTAACTTTCTCTCTAGCTCTGTCCTTGATCAGTTCGAGTTAATTACTTTCAATTTGTTTTTTTTTTAAATCTAATTATGTTATGTGCAGGAATGTGGTGCACACGTCAGTGTATGACAAGAATATAGAGGAATATGTGTCATCGTGGGTACCTGATGAAATAATCGAGGTAGAATCGGACAAATACAAGTACTGGACTCCTCATCCCCAAACAGGGGTGTTTGGGCCAGCTACTGATCACATTATAAAATATGGTTCTCAATTCTCCACGGTAGATTCTGTGTTGGAACAAAAGACATTTTTTCGTGATTTCGAGGATCTGGAGAAGCCTAGTTATCCTTAAGTTTCAGAAAACATCACAACAGAAAATACTACTAGCAGGGAAGGTGAAAGAGGTGTTTCGTTTGTTGTGTTCTATGAATATGTGATATGTTTAGTTAATTAATGGAAGTATAATATGGAGTATGTATAGAATAAAACTAGCTACTCTGTGTGGGCTGCTTTTAAATGGTCATATGGTGCAATACATACGATCAAACTTCTCTGTAATATCGTTTGTTTGTCCAAATTAAAAAAA</genome_strand>
        <mrna_strand>TTAGCTCATAATTTACTTATTATTACTGTTTAATAGCCATTTTTAAACATCTTCTTTTTCAGAATTGCATTTGCATGGCCACTAATTTACAGAAACGTGGACTGGTAAGCTTGGGGAAACGATTTGTGAACCAGATAACTTATTCAACTTCTCGAAATTCTGCCAACTCATCATCTACTGCGCTCTCTGGCAG.................................................................................................................................................................................................................................................................................................................................................................................................GAATGTGGTGCACACGTCAGTGTATGACAAGAATATAGAGGAATATGTGTCATCGTGGGTACCTGATGAAATAATCGAGGTAGAATCGGACAAATACAAGTACTGGACTCCTCATCCCCAAACAGGGGTGTTTGGGCCAGCTACTGATCACATTATAAAATATGGTTCTCAATTCTCCACGGTAGATTCTGTGTTGGAACAAAAGACATTTTTTCGTGATTTCGAGGATCTGGAGAAGCCTAGTTATCCTTAAGTTTCAGAAAACATCACAACAGAAAATACTACTAGCAGGGAAGGTGAAAGAGGTGTTTCGTTTGTTGTGTTCTATGAATATGTGATATGTTTAGTTAATTAATGGAAGTATAATATGGAGTATGTATAGAATAAAACTAGCTACTCTGTGTGGGCTGCTTTTAAATGGTCATATGGTGCAATACATACGATCAAACTTCTCTGTAATATCGTTTGTTTGTCCAAATTAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E710326" ref_strand="+" ref_description="SGN-E710326 [FA55AD02]">
      <seq>cattagctcataatttacttattattactgtttaatagccatttttaaacatcttctttttcagaattgcatttgcatggccactaatttacagaaacgtggactggtaagcttggggaaacgatttgtgaaccagataacttattcaacttctcgaaattctgccaactcatcatctactgcgctctctggcaggaatgtggtgcacacgtcagtgtatgacaagaatatagaggaatatgtgtcatcgtgggtacctgatgaaataatcgaggtagaatcggacaaatacaagtactggactcctcatccccaaacaggggtgtttgggccagctactgatcacattataaaatatggttctcaattctccacggtagattctgtgttggaacaaaagacattttttcgtgatttcgaggatctggagaagcctagttatccttaagtttcagaaaacatcacaacagaaaatactactagcagggaaggtgaaagaggtgtttcgtttgttgtgttctatgaatatgtgatatgtttagttaattaatggaagtataatatggagtatgtatacaataaaactagctactctgtgtgggctgcttttaaatggtcatatggtgcaatacatacgatccaacttctctgtaatatcgtttgtttgtccaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0113N10.1" temp_strand="-" temp_description="C06SLm0113N10.1  AC219227.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0113N10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11864" stop="10207"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11565" g_stop="11371" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="195" r_length="195" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11370" i_stop="10986" i_length="385">
            <donor d_prob="0.848" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10985" g_stop="10507" g_length="479"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="674" r_length="479" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0113N10.1" gen_strand="-" ref_id="SGN-E710326" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>674</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0113N10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E710326" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11565" e_stop="11371"/>
          <exon e_start="10985" e_stop="10507"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTAGCTCATAATTTACTTATTATTACTGTTTAATAGCCATTTTTAAACATCTTCTTTTTCAGAATTGCATTTGCATGGCCACTAATTTACAGAAACGTGGACTGGTAAGCTTGGGGAAACGATTTGTGAACCAGATAACTTATTCAACTTCTCGAAATTCTGCCAACTCATCATCTACTGCGCTCTCTGGCAGGTATACTCTGAACCAGCAGTGGCTCAAGCATATTAGTGGCCTAAAACAAAAATAAAACAAGCTTTAAATTTGAATTGTTAATAACTTTAATATAGTTGATTTCTTTTAGTTTTTAATTAATAATATAACCATTCTTATTTTTCATGAGATATAATACTCCAAATATGTCATATTTCTTCTAATCTGAATTCTGAATTCTTATAAACATCAACTTGTACTATTATGGATTAATACTTATTTATACGTATAAAATAAAATTTTGATTATGGTTACTAAGTTCTACCTTACCCGAACCTGTAACTTTCTCTCTAGCTCTGTCCTTGATCAGTTCGAGTTAATTACTTTCAATTTGTTTTTTTTTTAAATCTAATTATGTTATGTGCAGGAATGTGGTGCACACGTCAGTGTATGACAAGAATATAGAGGAATATGTGTCATCGTGGGTACCTGATGAAATAATCGAGGTAGAATCGGACAAATACAAGTACTGGACTCCTCATCCCCAAACAGGGGTGTTTGGGCCAGCTACTGATCACATTATAAAATATGGTTCTCAATTCTCCACGGTAGATTCTGTGTTGGAACAAAAGACATTTTTTCGTGATTTCGAGGATCTGGAGAAGCCTAGTTATCCTTAAGTTTCAGAAAACATCACAACAGAAAATACTACTAGCAGGGAAGGTGAAAGAGGTGTTTCGTTTGTTGTGTTCTATGAATATGTGATATGTTTAGTTAATTAATGGAAGTATAATATGGAGTATGTATAGAATAAAACTAGCTACTCTGTGTGGGCTGCTTTTAAATGGTCATATGGTGCAATACATACGATCAAACTTCTCTGTAATATCGTTTGTTTGTCCAAAT</genome_strand>
        <mrna_strand>CATTAGCTCATAATTTACTTATTATTACTGTTTAATAGCCATTTTTAAACATCTTCTTTTTCAGAATTGCATTTGCATGGCCACTAATTTACAGAAACGTGGACTGGTAAGCTTGGGGAAACGATTTGTGAACCAGATAACTTATTCAACTTCTCGAAATTCTGCCAACTCATCATCTACTGCGCTCTCTGGCAG.................................................................................................................................................................................................................................................................................................................................................................................................GAATGTGGTGCACACGTCAGTGTATGACAAGAATATAGAGGAATATGTGTCATCGTGGGTACCTGATGAAATAATCGAGGTAGAATCGGACAAATACAAGTACTGGACTCCTCATCCCCAAACAGGGGTGTTTGGGCCAGCTACTGATCACATTATAAAATATGGTTCTCAATTCTCCACGGTAGATTCTGTGTTGGAACAAAAGACATTTTTTCGTGATTTCGAGGATCTGGAGAAGCCTAGTTATCCTTAAGTTTCAGAAAACATCACAACAGAAAATACTACTAGCAGGGAAGGTGAAAGAGGTGTTTCGTTTGTTGTGTTCTATGAATATGTGATATGTTTAGTTAATTAATGGAAGTATAATATGGAGTATGTATACAATAAAACTAGCTACTCTGTGTGGGCTGCTTTTAAATGGTCATATGGTGCAATACATACGATCCAACTTCTCTGTAATATCGTTTGTTTGTCCAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E263643" ref_strand="+" ref_description="SGN-E263643 [cLEG-60-A13]">
      <seq>tattattactgtttaatagccatttttaaacatcttctttttcagaattgcatttgcatggccactaatttacagaaacgtggactggtaagcttggggaaacgatttgtgaaccagataacttattcaacttctcgaaattctgccaactcatcatctactgcgctctctggcaggaatgtggtgcacacgtcagtgtatgacaagaatatagaggaatatgtgtcatcgtgggtacctgatgaaataatcgaggtagaatcggacaaatacaagtactggactcctcatccccaaacaggggtgtttgggccagctactgatcacattataaaatatggttctcaattctccacggtagattctgtgttggaacaaaagacattttttcgtgatttcgaggatctggagaagcctagttatccttaagtttcagaaaacatcacaacagaaaatactactagcagggaaggtgaaagaggtgtttcgtttgttgtgttctatgaatatgtgatatgtttagttaattaatggaagtataatatggagtatgtatagaataaaactagctactctgtgtgggctgcttttaaatggtcatatggtgcaatacatacgatcaaacttctctgtaatatcgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0113N10.1" temp_strand="-" temp_description="C06SLm0113N10.1  AC219227.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0113N10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11846" stop="10222"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11546" g_stop="11371" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="176" r_length="176" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11370" i_stop="10986" i_length="385">
            <donor d_prob="0.848" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10985" g_stop="10521" g_length="465"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="641" r_length="465" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0113N10.1" gen_strand="-" ref_id="SGN-E263643" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>641</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0113N10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E263643" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11546" e_stop="11371"/>
          <exon e_start="10985" e_stop="10521"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTATTACTGTTTAATAGCCATTTTTAAACATCTTCTTTTTCAGAATTGCATTTGCATGGCCACTAATTTACAGAAACGTGGACTGGTAAGCTTGGGGAAACGATTTGTGAACCAGATAACTTATTCAACTTCTCGAAATTCTGCCAACTCATCATCTACTGCGCTCTCTGGCAGGTATACTCTGAACCAGCAGTGGCTCAAGCATATTAGTGGCCTAAAACAAAAATAAAACAAGCTTTAAATTTGAATTGTTAATAACTTTAATATAGTTGATTTCTTTTAGTTTTTAATTAATAATATAACCATTCTTATTTTTCATGAGATATAATACTCCAAATATGTCATATTTCTTCTAATCTGAATTCTGAATTCTTATAAACATCAACTTGTACTATTATGGATTAATACTTATTTATACGTATAAAATAAAATTTTGATTATGGTTACTAAGTTCTACCTTACCCGAACCTGTAACTTTCTCTCTAGCTCTGTCCTTGATCAGTTCGAGTTAATTACTTTCAATTTGTTTTTTTTTTAAATCTAATTATGTTATGTGCAGGAATGTGGTGCACACGTCAGTGTATGACAAGAATATAGAGGAATATGTGTCATCGTGGGTACCTGATGAAATAATCGAGGTAGAATCGGACAAATACAAGTACTGGACTCCTCATCCCCAAACAGGGGTGTTTGGGCCAGCTACTGATCACATTATAAAATATGGTTCTCAATTCTCCACGGTAGATTCTGTGTTGGAACAAAAGACATTTTTTCGTGATTTCGAGGATCTGGAGAAGCCTAGTTATCCTTAAGTTTCAGAAAACATCACAACAGAAAATACTACTAGCAGGGAAGGTGAAAGAGGTGTTTCGTTTGTTGTGTTCTATGAATATGTGATATGTTTAGTTAATTAATGGAAGTATAATATGGAGTATGTATAGAATAAAACTAGCTACTCTGTGTGGGCTGCTTTTAAATGGTCATATGGTGCAATACATACGATCAAACTTCTCTGTAATATCGT</genome_strand>
        <mrna_strand>TATTATTACTGTTTAATAGCCATTTTTAAACATCTTCTTTTTCAGAATTGCATTTGCATGGCCACTAATTTACAGAAACGTGGACTGGTAAGCTTGGGGAAACGATTTGTGAACCAGATAACTTATTCAACTTCTCGAAATTCTGCCAACTCATCATCTACTGCGCTCTCTGGCAG.................................................................................................................................................................................................................................................................................................................................................................................................GAATGTGGTGCACACGTCAGTGTATGACAAGAATATAGAGGAATATGTGTCATCGTGGGTACCTGATGAAATAATCGAGGTAGAATCGGACAAATACAAGTACTGGACTCCTCATCCCCAAACAGGGGTGTTTGGGCCAGCTACTGATCACATTATAAAATATGGTTCTCAATTCTCCACGGTAGATTCTGTGTTGGAACAAAAGACATTTTTTCGTGATTTCGAGGATCTGGAGAAGCCTAGTTATCCTTAAGTTTCAGAAAACATCACAACAGAAAATACTACTAGCAGGGAAGGTGAAAGAGGTGTTTCGTTTGTTGTGTTCTATGAATATGTGATATGTTTAGTTAATTAATGGAAGTATAATATGGAGTATGTATAGAATAAAACTAGCTACTCTGTGTGGGCTGCTTTTAAATGGTCATATGGTGCAATACATACGATCAAACTTCTCTGTAATATCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E622522" ref_strand="+" ref_description="SGN-E622522 [72890]">
      <seq>attattagcttataattactgtttaagagccattcttaaatatcttctttttcagaattgcatttgcatggccactaatttacagaagcgtggactggtaagcttggggaaacgatttctgaaccagataacttattcaacttctcgaaattctgccaactcatcatctactgcccagatctctggcaggagggtggtgcacacgtcagtgtatgacaagaatccagaggaatatgtgtcatcgtgggtacctgatgaaataatcgaggtagaatcagacaagtacaagtactggactcctcatccccaaaccggggtatttgggccagctactgatcacattataaaatacggtgaatatggttctcaattctccactgtagattctgtgttggaacaaaagacattttttcgcgatcttgaggatctggagaagcctagttatccttaagtttcacaacagaaaatactactagtagggaaggtgaaagaggtgtttcgtttgttgtgttctatgaatatgtgatatgtttagttaattaatggaagtacaatatggagtatgtatagaataaaactagccactctacgtgggctgcttttaaatgatcatatggtgcaatacatacgatcaaatttctctgtaacatcgtcgtttgtcccaaaaaaaaatttgattgtataccaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0113N10.1" temp_strand="-" temp_description="C06SLm0113N10.1  AC219227.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0113N10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11856" stop="10221"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11556" g_stop="11371" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="189" r_length="189" r_score="0.914"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11370" i_stop="10986" i_length="385">
            <donor d_prob="0.848" d_score="0.85"/>
            <acceptor a_prob="1.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10985" g_stop="10528" g_length="458"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="646" r_length="457" r_score="0.897"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0113N10.1" gen_strand="-" ref_id="SGN-E622522" ref_strand="+">
        <total_alignment_score>0.902</total_alignment_score>
        <cumulative_length_of_scored_exons>644</cumulative_length_of_scored_exons>
        <coverage percentage="0.927" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0113N10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E622522" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11556" e_stop="11371"/>
          <exon e_start="10985" e_stop="10528"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAATTTACTTATTATTACTGTTTAATAGCCATTTTTAAACATCTTCTTTTTCAGAATTGCATTTGCATGGCCACTAATTTACAGAAACGTGGACTGGTAAGCTTGGGGAAACGATTTGTGAACCAGATAACTTATTCAACTTCTCGAAATTCTGCCAACTCATCATCTACTG--C-GCTCTCTGGCAGGTATACTCTGAACCAGCAGTGGCTCAAGCATATTAGTGGCCTAAAACAAAAATAAAACAAGCTTTAAATTTGAATTGTTAATAACTTTAATATAGTTGATTTCTTTTAGTTTTTAATTAATAATATAACCATTCTTATTTTTCATGAGATATAATACTCCAAATATGTCATATTTCTTCTAATCTGAATTCTGAATTCTTATAAACATCAACTTGTACTATTATGGATTAATACTTATTTATACGTATAAAATAAAATTTTGATTATGGTTACTAAGTTCTACCTTACCCGAACCTGTAACTTTCTCTCTAGCTCTGTCCTTGATCAGTTCGAGTTAATTACTTTCAATTTGTTTTTTTTTTAAATCTAATTATGTTATGTGCAGGAATGTGGTGCACACGTCAGTGTATGACAAGAATATAGAGGAATATGTGTCATCGTGGGTACCTGATGAAATAATCGAGGTAGAATCGGACAAATACAAGTACTGGACTCCTCATCCCCAAACAGGGGTGTTTGGGCCAGCTACTGATCACATTATAAAATA---------TGGTTCTCAATTCTCCACGGTAGATTCTGTGTTGGAACAAAAGACATTTTTTCGTGATTTCGAGGATCTGGAGAAGCCTAGTTATCCTTAAGTTTCAGAAAACATCACAACAGAAAATACTACTAGCAGGGAAGGTGAAAGAGGTGTTTCGTTTGTTGTGTTCTATGAATATGTGATATGTTTAGTTAATTAATGGAAGTATAATATGGAGTATGTATAGAATAAAACTAGCTACTCTGTGTGGGCTGCTTTTAAATGGTCATATGGTGCAATACATACGATCAAACTTCTCTGTA</genome_strand>
        <mrna_strand>ATTATTAGCTTATAATTACTGTTTAAGAGCCATTCTTAAATATCTTCTTTTTCAGAATTGCATTTGCATGGCCACTAATTTACAGAAGCGTGGACTGGTAAGCTTGGGGAAACGATTTCTGAACCAGATAACTTATTCAACTTCTCGAAATTCTGCCAACTCATCATCTACTGCCCAGATCTCTGGCAG.................................................................................................................................................................................................................................................................................................................................................................................................GAGGGTGGTGCACACGTCAGTGTATGACAAGAATCCAGAGGAATATGTGTCATCGTGGGTACCTGATGAAATAATCGAGGTAGAATCAGACAAGTACAAGTACTGGACTCCTCATCCCCAAACCGGGGTATTTGGGCCAGCTACTGATCACATTATAAAATACGGTGAATATGGTTCTCAATTCTCCACTGTAGATTCTGTGTTGGAACAAAAGACATTTTTTCGCGATCTTGAGGATCTGGAGAAGCCTAGTTATCCTTAAG-TT---------TCACAACAGAAAATACTACTAGTAGGGAAGGTGAAAGAGGTGTTTCGTTTGTTGTGTTCTATGAATATGTGATATGTTTAGTTAATTAATGGAAGTACAATATGGAGTATGTATAGAATAAAACTAGCCACTCTACGTGGGCTGCTTTTAAATGATCATATGGTGCAATACATACGATCAAATTTCTCTGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E273382" ref_strand="+" ref_description="SGN-E273382 [cLEN-3-H8]">
      <seq>ttagctcataatttacttattattactgtttaatagccatttttaaacatcttctttttcagaattgcatttgcatggccactaatttacagaaacgtggactggtaagcttggggaaacgatttgtgaaccagataacttattcaacttctcgaaattctgccaactcatcatctactgcgctctctggcaggaatgtggtgcacacgtcagtgtatgacaagaatatagaggaatatgtgtcatcgtgggtacctgatgaaataatcgaggtagaatcggacaaatacaagtactggactcctcatccccaaacaggggtgtttgggccagctactgatcacattataaaatatggttctcaattctccacggtagattctgtgttggaacaaaagacattttttcgtgatttcgaggatctggagaagcctagttatccttaagtttcagaaaacatcacaacagaaaatactactagcagggaaggtgaaagaggtgtttcgtttgttgtgttctatgaatatgtgatatgtttagttaattaatggaagtataatatggagtatgtatagaataaaactagctactctgtgtgggctgcttttaaatggtcatatggtgcaatacatacgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0113N10.1" temp_strand="-" temp_description="C06SLm0113N10.1  AC219227.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0113N10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11863" stop="10242"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11563" g_stop="11371" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="193" r_length="193" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11370" i_stop="10986" i_length="385">
            <donor d_prob="0.848" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10985" g_stop="10542" g_length="444"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="637" r_length="444" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0113N10.1" gen_strand="-" ref_id="SGN-E273382" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>637</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0113N10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E273382" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11563" e_stop="11371"/>
          <exon e_start="10985" e_stop="10542"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGCTCATAATTTACTTATTATTACTGTTTAATAGCCATTTTTAAACATCTTCTTTTTCAGAATTGCATTTGCATGGCCACTAATTTACAGAAACGTGGACTGGTAAGCTTGGGGAAACGATTTGTGAACCAGATAACTTATTCAACTTCTCGAAATTCTGCCAACTCATCATCTACTGCGCTCTCTGGCAGGTATACTCTGAACCAGCAGTGGCTCAAGCATATTAGTGGCCTAAAACAAAAATAAAACAAGCTTTAAATTTGAATTGTTAATAACTTTAATATAGTTGATTTCTTTTAGTTTTTAATTAATAATATAACCATTCTTATTTTTCATGAGATATAATACTCCAAATATGTCATATTTCTTCTAATCTGAATTCTGAATTCTTATAAACATCAACTTGTACTATTATGGATTAATACTTATTTATACGTATAAAATAAAATTTTGATTATGGTTACTAAGTTCTACCTTACCCGAACCTGTAACTTTCTCTCTAGCTCTGTCCTTGATCAGTTCGAGTTAATTACTTTCAATTTGTTTTTTTTTTAAATCTAATTATGTTATGTGCAGGAATGTGGTGCACACGTCAGTGTATGACAAGAATATAGAGGAATATGTGTCATCGTGGGTACCTGATGAAATAATCGAGGTAGAATCGGACAAATACAAGTACTGGACTCCTCATCCCCAAACAGGGGTGTTTGGGCCAGCTACTGATCACATTATAAAATATGGTTCTCAATTCTCCACGGTAGATTCTGTGTTGGAACAAAAGACATTTTTTCGTGATTTCGAGGATCTGGAGAAGCCTAGTTATCCTTAAGTTTCAGAAAACATCACAACAGAAAATACTACTAGCAGGGAAGGTGAAAGAGGTGTTTCGTTTGTTGTGTTCTATGAATATGTGATATGTTTAGTTAATTAATGGAAGTATAATATGGAGTATGTATAGAATAAAACTAGCTACTCTGTGTGGGCTGCTTTTAAATGGTCATATGGTGCAATACATACGAT</genome_strand>
        <mrna_strand>TTAGCTCATAATTTACTTATTATTACTGTTTAATAGCCATTTTTAAACATCTTCTTTTTCAGAATTGCATTTGCATGGCCACTAATTTACAGAAACGTGGACTGGTAAGCTTGGGGAAACGATTTGTGAACCAGATAACTTATTCAACTTCTCGAAATTCTGCCAACTCATCATCTACTGCGCTCTCTGGCAG.................................................................................................................................................................................................................................................................................................................................................................................................GAATGTGGTGCACACGTCAGTGTATGACAAGAATATAGAGGAATATGTGTCATCGTGGGTACCTGATGAAATAATCGAGGTAGAATCGGACAAATACAAGTACTGGACTCCTCATCCCCAAACAGGGGTGTTTGGGCCAGCTACTGATCACATTATAAAATATGGTTCTCAATTCTCCACGGTAGATTCTGTGTTGGAACAAAAGACATTTTTTCGTGATTTCGAGGATCTGGAGAAGCCTAGTTATCCTTAAGTTTCAGAAAACATCACAACAGAAAATACTACTAGCAGGGAAGGTGAAAGAGGTGTTTCGTTTGTTGTGTTCTATGAATATGTGATATGTTTAGTTAATTAATGGAAGTATAATATGGAGTATGTATAGAATAAAACTAGCTACTCTGTGTGGGCTGCTTTTAAATGGTCATATGGTGCAATACATACGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E276153" ref_strand="+" ref_description="SGN-E276153 [cLEN-21-C23]">
      <seq>gctataacaattgcatttgcatggccactaatttacagaaacgtggactggtaagcttggggaaacgatttgtgaaccagataacttattcaacttctcgaaattctgccaactcatcatctactgcgctctctggcaggaatgtggtgcacacgtcagtgtatgacaagaatatagaggaatatgtgtcatcgtgggtacctgatgaaataatcgaggtagaatcggacaaatacaagtactggactcctcatccccaaacaggggtgtttgggccagctactgatcacattataaaatatggttctcaattctccacggtagattctgtgttggaacaaaagacattttttcgtgatttcgaggatctggagaagcctagttatccttaagtttcagaaaacatcacaacagaaaatactactagcagggaaggtgaaagaggtgtttcgtttgttgtgttctatgaatatgtgatatgtttagttaattaatggaagtataatatggagtatgtatagaataaaactagctactctgtgtgggctgcttttaaatggtcatatggtgcaatacatacga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0113N10.1" temp_strand="-" temp_description="C06SLm0113N10.1  AC219227.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0113N10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11807" stop="10243"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11596" g_stop="11589" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="8" r_length="8" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11588" i_stop="11502" i_length="87">
            <donor d_prob="0.900" d_score="0.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11501" g_stop="11371" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="139" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11370" i_stop="10986" i_length="385">
            <donor d_prob="0.848" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="10985" g_stop="10543" g_length="443"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="582" r_length="443" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0113N10.1" gen_strand="-" ref_id="SGN-E276153" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>582</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0113N10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E276153" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11596" e_stop="11589"/>
          <exon e_start="11501" e_stop="11371"/>
          <exon e_start="10985" e_stop="10543"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTATAACGTATACTTTTCTCTTCTTATAATTATTAGCTCATAATTTACTTATTATTACTGTTTAATAGCCATTTTTAAACATCTTCTTTTTCAGAATTGCATTTGCATGGCCACTAATTTACAGAAACGTGGACTGGTAAGCTTGGGGAAACGATTTGTGAACCAGATAACTTATTCAACTTCTCGAAATTCTGCCAACTCATCATCTACTGCGCTCTCTGGCAGGTATACTCTGAACCAGCAGTGGCTCAAGCATATTAGTGGCCTAAAACAAAAATAAAACAAGCTTTAAATTTGAATTGTTAATAACTTTAATATAGTTGATTTCTTTTAGTTTTTAATTAATAATATAACCATTCTTATTTTTCATGAGATATAATACTCCAAATATGTCATATTTCTTCTAATCTGAATTCTGAATTCTTATAAACATCAACTTGTACTATTATGGATTAATACTTATTTATACGTATAAAATAAAATTTTGATTATGGTTACTAAGTTCTACCTTACCCGAACCTGTAACTTTCTCTCTAGCTCTGTCCTTGATCAGTTCGAGTTAATTACTTTCAATTTGTTTTTTTTTTAAATCTAATTATGTTATGTGCAGGAATGTGGTGCACACGTCAGTGTATGACAAGAATATAGAGGAATATGTGTCATCGTGGGTACCTGATGAAATAATCGAGGTAGAATCGGACAAATACAAGTACTGGACTCCTCATCCCCAAACAGGGGTGTTTGGGCCAGCTACTGATCACATTATAAAATATGGTTCTCAATTCTCCACGGTAGATTCTGTGTTGGAACAAAAGACATTTTTTCGTGATTTCGAGGATCTGGAGAAGCCTAGTTATCCTTAAGTTTCAGAAAACATCACAACAGAAAATACTACTAGCAGGGAAGGTGAAAGAGGTGTTTCGTTTGTTGTGTTCTATGAATATGTGATATGTTTAGTTAATTAATGGAAGTATAATATGGAGTATGTATAGAATAAAACTAGCTACTCTGTGTGGGCTGCTTTTAAATGGTCATATGGTGCAATACATACGA</genome_strand>
        <mrna_strand>GCTATAAC.......................................................................................AATTGCATTTGCATGGCCACTAATTTACAGAAACGTGGACTGGTAAGCTTGGGGAAACGATTTGTGAACCAGATAACTTATTCAACTTCTCGAAATTCTGCCAACTCATCATCTACTGCGCTCTCTGGCAG.................................................................................................................................................................................................................................................................................................................................................................................................GAATGTGGTGCACACGTCAGTGTATGACAAGAATATAGAGGAATATGTGTCATCGTGGGTACCTGATGAAATAATCGAGGTAGAATCGGACAAATACAAGTACTGGACTCCTCATCCCCAAACAGGGGTGTTTGGGCCAGCTACTGATCACATTATAAAATATGGTTCTCAATTCTCCACGGTAGATTCTGTGTTGGAACAAAAGACATTTTTTCGTGATTTCGAGGATCTGGAGAAGCCTAGTTATCCTTAAGTTTCAGAAAACATCACAACAGAAAATACTACTAGCAGGGAAGGTGAAAGAGGTGTTTCGTTTGTTGTGTTCTATGAATATGTGATATGTTTAGTTAATTAATGGAAGTATAATATGGAGTATGTATAGAATAAAACTAGCTACTCTGTGTGGGCTGCTTTTAAATGGTCATATGGTGCAATACATACGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E254444" ref_strand="+" ref_description="SGN-E254444 [cLEG-27-B20]">
      <seq>tattattactgtttaatagccatttttaaacatcttctttttcagaattgcatttgcatggccactaatttacagaaacgtggactggtaagcttggggaaacgatttgtgaaccagataacttattcaacttctcgaaattctgccaactcatcatctactgcgctctctggcaggaatgtggtgcacacgtcagtgtatgacaagaatatagaggaatatgtgtcatcgtgggtacctgatgaaataatcgaggtagaatcggacaaatacaagtactggactcctcatccccaaacaggggtgtttgggccagctactgatcacattataaaatatggttctcaattctccacggtagattctgtgttggaacaaaagacattttttcgtgatttcgaggatctggagaagcctagttatccttaagtttcagaaaacatcacaacagaaaatactactagcagggaaggtgaaagaggtgtttcgtttgttgtgttctatgaatatgtgatatgtttagttaattaatggaagtataatatggagtatgtatagaataaaactagctactctgtgtgggctgcttttaaatggtcatatggtgcaatacata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0113N10.1" temp_strand="-" temp_description="C06SLm0113N10.1  AC219227.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0113N10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11846" stop="10246"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11546" g_stop="11371" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="176" r_length="176" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11370" i_stop="10986" i_length="385">
            <donor d_prob="0.848" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10985" g_stop="10546" g_length="440"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="616" r_length="440" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0113N10.1" gen_strand="-" ref_id="SGN-E254444" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>616</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0113N10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E254444" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11546" e_stop="11371"/>
          <exon e_start="10985" e_stop="10546"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTATTACTGTTTAATAGCCATTTTTAAACATCTTCTTTTTCAGAATTGCATTTGCATGGCCACTAATTTACAGAAACGTGGACTGGTAAGCTTGGGGAAACGATTTGTGAACCAGATAACTTATTCAACTTCTCGAAATTCTGCCAACTCATCATCTACTGCGCTCTCTGGCAGGTATACTCTGAACCAGCAGTGGCTCAAGCATATTAGTGGCCTAAAACAAAAATAAAACAAGCTTTAAATTTGAATTGTTAATAACTTTAATATAGTTGATTTCTTTTAGTTTTTAATTAATAATATAACCATTCTTATTTTTCATGAGATATAATACTCCAAATATGTCATATTTCTTCTAATCTGAATTCTGAATTCTTATAAACATCAACTTGTACTATTATGGATTAATACTTATTTATACGTATAAAATAAAATTTTGATTATGGTTACTAAGTTCTACCTTACCCGAACCTGTAACTTTCTCTCTAGCTCTGTCCTTGATCAGTTCGAGTTAATTACTTTCAATTTGTTTTTTTTTTAAATCTAATTATGTTATGTGCAGGAATGTGGTGCACACGTCAGTGTATGACAAGAATATAGAGGAATATGTGTCATCGTGGGTACCTGATGAAATAATCGAGGTAGAATCGGACAAATACAAGTACTGGACTCCTCATCCCCAAACAGGGGTGTTTGGGCCAGCTACTGATCACATTATAAAATATGGTTCTCAATTCTCCACGGTAGATTCTGTGTTGGAACAAAAGACATTTTTTCGTGATTTCGAGGATCTGGAGAAGCCTAGTTATCCTTAAGTTTCAGAAAACATCACAACAGAAAATACTACTAGCAGGGAAGGTGAAAGAGGTGTTTCGTTTGTTGTGTTCTATGAATATGTGATATGTTTAGTTAATTAATGGAAGTATAATATGGAGTATGTATAGAATAAAACTAGCTACTCTGTGTGGGCTGCTTTTAAATGGTCATATGGTGCAATACATA</genome_strand>
        <mrna_strand>TATTATTACTGTTTAATAGCCATTTTTAAACATCTTCTTTTTCAGAATTGCATTTGCATGGCCACTAATTTACAGAAACGTGGACTGGTAAGCTTGGGGAAACGATTTGTGAACCAGATAACTTATTCAACTTCTCGAAATTCTGCCAACTCATCATCTACTGCGCTCTCTGGCAG.................................................................................................................................................................................................................................................................................................................................................................................................GAATGTGGTGCACACGTCAGTGTATGACAAGAATATAGAGGAATATGTGTCATCGTGGGTACCTGATGAAATAATCGAGGTAGAATCGGACAAATACAAGTACTGGACTCCTCATCCCCAAACAGGGGTGTTTGGGCCAGCTACTGATCACATTATAAAATATGGTTCTCAATTCTCCACGGTAGATTCTGTGTTGGAACAAAAGACATTTTTTCGTGATTTCGAGGATCTGGAGAAGCCTAGTTATCCTTAAGTTTCAGAAAACATCACAACAGAAAATACTACTAGCAGGGAAGGTGAAAGAGGTGTTTCGTTTGTTGTGTTCTATGAATATGTGATATGTTTAGTTAATTAATGGAAGTATAATATGGAGTATGTATAGAATAAAACTAGCTACTCTGTGTGGGCTGCTTTTAAATGGTCATATGGTGCAATACATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E247047" ref_strand="+" ref_description="SGN-E247047 [cLEF-41-F9]">
      <seq>ttaatagccatttttaaacatcttctttttcagaattgcatttgcatggccactaatttacagaaacgtggactggtaagcttggggaaacgatttgtgaaccagataacttattcaacttctcgaaattctgccaactcatcatctactgcgctctctggcaggaatgtggtgcacacgtcagtgtatgacaagaatatagaggaatatgtgtcatcgtgggtacctgatgaaataatcgaggtagaatcggacaaatacaagtactggactcctcatccccaaacaggggtgtttgggccagctactgatcacattataaaatatggttctcaattctccacggtagattctgtgttggaacaaaagaacattttttcgtgatttcgaggatctggagaagcctagttatccttaagtttcagaaaacatcacaacagaaaatactactagcagggaaggtgaaagaagtgtttcgtttgttgtgttctatgaatatgtgatatgtttagttaattaatggaagtataatatggagtatgtatagaataaaactagctactctgtgtgggctgcttttaaatggtcatatggtgcaatacata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0113N10.1" temp_strand="-" temp_description="C06SLm0113N10.1  AC219227.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0113N10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11834" stop="10246"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11534" g_stop="11371" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="164" r_length="164" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11370" i_stop="10986" i_length="385">
            <donor d_prob="0.848" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10985" g_stop="10546" g_length="440"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="605" r_length="441" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0113N10.1" gen_strand="-" ref_id="SGN-E247047" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>604</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0113N10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E247047" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11534" e_stop="11371"/>
          <exon e_start="10985" e_stop="10546"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAATAGCCATTTTTAAACATCTTCTTTTTCAGAATTGCATTTGCATGGCCACTAATTTACAGAAACGTGGACTGGTAAGCTTGGGGAAACGATTTGTGAACCAGATAACTTATTCAACTTCTCGAAATTCTGCCAACTCATCATCTACTGCGCTCTCTGGCAGGTATACTCTGAACCAGCAGTGGCTCAAGCATATTAGTGGCCTAAAACAAAAATAAAACAAGCTTTAAATTTGAATTGTTAATAACTTTAATATAGTTGATTTCTTTTAGTTTTTAATTAATAATATAACCATTCTTATTTTTCATGAGATATAATACTCCAAATATGTCATATTTCTTCTAATCTGAATTCTGAATTCTTATAAACATCAACTTGTACTATTATGGATTAATACTTATTTATACGTATAAAATAAAATTTTGATTATGGTTACTAAGTTCTACCTTACCCGAACCTGTAACTTTCTCTCTAGCTCTGTCCTTGATCAGTTCGAGTTAATTACTTTCAATTTGTTTTTTTTTTAAATCTAATTATGTTATGTGCAGGAATGTGGTGCACACGTCAGTGTATGACAAGAATATAGAGGAATATGTGTCATCGTGGGTACCTGATGAAATAATCGAGGTAGAATCGGACAAATACAAGTACTGGACTCCTCATCCCCAAACAGGGGTGTTTGGGCCAGCTACTGATCACATTATAAAATATGGTTCTCAATTCTCCACGGTAGATTCTGTGTTGGAACAAAAG-ACATTTTTTCGTGATTTCGAGGATCTGGAGAAGCCTAGTTATCCTTAAGTTTCAGAAAACATCACAACAGAAAATACTACTAGCAGGGAAGGTGAAAGAGGTGTTTCGTTTGTTGTGTTCTATGAATATGTGATATGTTTAGTTAATTAATGGAAGTATAATATGGAGTATGTATAGAATAAAACTAGCTACTCTGTGTGGGCTGCTTTTAAATGGTCATATGGTGCAATACATA</genome_strand>
        <mrna_strand>TTAATAGCCATTTTTAAACATCTTCTTTTTCAGAATTGCATTTGCATGGCCACTAATTTACAGAAACGTGGACTGGTAAGCTTGGGGAAACGATTTGTGAACCAGATAACTTATTCAACTTCTCGAAATTCTGCCAACTCATCATCTACTGCGCTCTCTGGCAG.................................................................................................................................................................................................................................................................................................................................................................................................GAATGTGGTGCACACGTCAGTGTATGACAAGAATATAGAGGAATATGTGTCATCGTGGGTACCTGATGAAATAATCGAGGTAGAATCGGACAAATACAAGTACTGGACTCCTCATCCCCAAACAGGGGTGTTTGGGCCAGCTACTGATCACATTATAAAATATGGTTCTCAATTCTCCACGGTAGATTCTGTGTTGGAACAAAAGAACATTTTTTCGTGATTTCGAGGATCTGGAGAAGCCTAGTTATCCTTAAGTTTCAGAAAACATCACAACAGAAAATACTACTAGCAGGGAAGGTGAAAGAAGTGTTTCGTTTGTTGTGTTCTATGAATATGTGATATGTTTAGTTAATTAATGGAAGTATAATATGGAGTATGTATAGAATAAAACTAGCTACTCTGTGTGGGCTGCTTTTAAATGGTCATATGGTGCAATACATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E249440" ref_strand="+" ref_description="SGN-E249440 [cLEF-50-H12]">
      <seq>tttttcagaattgcatttgcatggccactaatttacagaaacgtggactggtaagcttggggaaacgatttgtgaaccagataacttattcaacttctcgaaattctgccaactcatcatctactgcgctctctggcaggaatgtggtgcacacgtcagtgtatgacaagaatatagaggaatatgtgtcatcgtgggtacctgatgaaataatcgaggtagaatcggacaaatacaagtactggactcctcatccccaaacaggggtgtttgggccagctactgatcacattataaaatatggttctcaattctccacggtagattctgtgttggaacaaaagacattttttcgtgatttcgaggatctggagaagcctagttatccttaagtttcagaaaacatcacaacagaaaatactactagcagggaaggtgaaagaagtgtttcgtttgttgtgttctatgaatatgtgatatgtttagttaattaatggaagtataatatggagtatgtatagaataaaactagctactctgtgtgggctgcttttaaatggtccnnnnaaaaaaaaaaannnnaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0113N10.1" temp_strand="-" temp_description="C06SLm0113N10.1  AC219227.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0113N10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11809" stop="10263"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11509" g_stop="11371" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="139" r_length="139" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11370" i_stop="10986" i_length="385">
            <donor d_prob="0.848" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10985" g_stop="10558" g_length="428"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="567" r_length="428" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="568" polyA_stop="579"/>
      <MATCH_line gen_id="C06SLm0113N10.1" gen_strand="-" ref_id="SGN-E249440" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>567</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0113N10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E249440" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11509" e_stop="11371"/>
          <exon e_start="10985" e_stop="10558"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTCAGAATTGCATTTGCATGGCCACTAATTTACAGAAACGTGGACTGGTAAGCTTGGGGAAACGATTTGTGAACCAGATAACTTATTCAACTTCTCGAAATTCTGCCAACTCATCATCTACTGCGCTCTCTGGCAGGTATACTCTGAACCAGCAGTGGCTCAAGCATATTAGTGGCCTAAAACAAAAATAAAACAAGCTTTAAATTTGAATTGTTAATAACTTTAATATAGTTGATTTCTTTTAGTTTTTAATTAATAATATAACCATTCTTATTTTTCATGAGATATAATACTCCAAATATGTCATATTTCTTCTAATCTGAATTCTGAATTCTTATAAACATCAACTTGTACTATTATGGATTAATACTTATTTATACGTATAAAATAAAATTTTGATTATGGTTACTAAGTTCTACCTTACCCGAACCTGTAACTTTCTCTCTAGCTCTGTCCTTGATCAGTTCGAGTTAATTACTTTCAATTTGTTTTTTTTTTAAATCTAATTATGTTATGTGCAGGAATGTGGTGCACACGTCAGTGTATGACAAGAATATAGAGGAATATGTGTCATCGTGGGTACCTGATGAAATAATCGAGGTAGAATCGGACAAATACAAGTACTGGACTCCTCATCCCCAAACAGGGGTGTTTGGGCCAGCTACTGATCACATTATAAAATATGGTTCTCAATTCTCCACGGTAGATTCTGTGTTGGAACAAAAGACATTTTTTCGTGATTTCGAGGATCTGGAGAAGCCTAGTTATCCTTAAGTTTCAGAAAACATCACAACAGAAAATACTACTAGCAGGGAAGGTGAAAGAGGTGTTTCGTTTGTTGTGTTCTATGAATATGTGATATGTTTAGTTAATTAATGGAAGTATAATATGGAGTATGTATAGAATAAAACTAGCTACTCTGTGTGGGCTGCTTTTAAATGGTCATATG</genome_strand>
        <mrna_strand>TTTTTCAGAATTGCATTTGCATGGCCACTAATTTACAGAAACGTGGACTGGTAAGCTTGGGGAAACGATTTGTGAACCAGATAACTTATTCAACTTCTCGAAATTCTGCCAACTCATCATCTACTGCGCTCTCTGGCAG.................................................................................................................................................................................................................................................................................................................................................................................................GAATGTGGTGCACACGTCAGTGTATGACAAGAATATAGAGGAATATGTGTCATCGTGGGTACCTGATGAAATAATCGAGGTAGAATCGGACAAATACAAGTACTGGACTCCTCATCCCCAAACAGGGGTGTTTGGGCCAGCTACTGATCACATTATAAAATATGGTTCTCAATTCTCCACGGTAGATTCTGTGTTGGAACAAAAGACATTTTTTCGTGATTTCGAGGATCTGGAGAAGCCTAGTTATCCTTAAGTTTCAGAAAACATCACAACAGAAAATACTACTAGCAGGGAAGGTGAAAGAAGTGTTTCGTTTGTTGTGTTCTATGAATATGTGATATGTTTAGTTAATTAATGGAAGTATAATATGGAGTATGTATAGAATAAAACTAGCTACTCTGTGTGGGCTGCTTTTAAATGGTCCNNNN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E276696" ref_strand="+" ref_description="SGN-E276696 [cLEN-14-O12]">
      <seq>ttagctcataatttacttattattactgtttaatagccatttttaaacatcttctttttcagaattgcatttgcatggccactaatttacagaaacgtggactggtaagcttggggaaacgatttgtgaaccagataacttattcaacttctcgaaattctgccaactcatcatctactgcgctctctggcaggaatgtggtgcacacgtcagtgtatgacaagaatatagaggaatatgtgtcatcgtgggtacctgatgaaataatcgaggtagaatcggacaaatacaagtactggactcctcatccccaaacaggggtgtttgggccagctactgatcacattataaaatatggttctcaattctccacggtagattctgtgttggaacaaaagacattttttcgtgatttcgaggatctggagaagcctagttatccttaagtttcagaaaacatcacaacagaaaatactactagcagggaaggtgaaagaggtgtttcgtttgttgtgttctatgaatatgtgatatgtttagttaattaatggaagtataatatggagtatgtatagaataaaactagctactctgtgtgggctgcttttaaatggtcatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0113N10.1" temp_strand="-" temp_description="C06SLm0113N10.1  AC219227.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0113N10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11863" stop="10259"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11563" g_stop="11371" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="193" r_length="193" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11370" i_stop="10986" i_length="385">
            <donor d_prob="0.848" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10985" g_stop="10559" g_length="427"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="620" r_length="427" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0113N10.1" gen_strand="-" ref_id="SGN-E276696" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>620</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0113N10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E276696" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11563" e_stop="11371"/>
          <exon e_start="10985" e_stop="10559"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGCTCATAATTTACTTATTATTACTGTTTAATAGCCATTTTTAAACATCTTCTTTTTCAGAATTGCATTTGCATGGCCACTAATTTACAGAAACGTGGACTGGTAAGCTTGGGGAAACGATTTGTGAACCAGATAACTTATTCAACTTCTCGAAATTCTGCCAACTCATCATCTACTGCGCTCTCTGGCAGGTATACTCTGAACCAGCAGTGGCTCAAGCATATTAGTGGCCTAAAACAAAAATAAAACAAGCTTTAAATTTGAATTGTTAATAACTTTAATATAGTTGATTTCTTTTAGTTTTTAATTAATAATATAACCATTCTTATTTTTCATGAGATATAATACTCCAAATATGTCATATTTCTTCTAATCTGAATTCTGAATTCTTATAAACATCAACTTGTACTATTATGGATTAATACTTATTTATACGTATAAAATAAAATTTTGATTATGGTTACTAAGTTCTACCTTACCCGAACCTGTAACTTTCTCTCTAGCTCTGTCCTTGATCAGTTCGAGTTAATTACTTTCAATTTGTTTTTTTTTTAAATCTAATTATGTTATGTGCAGGAATGTGGTGCACACGTCAGTGTATGACAAGAATATAGAGGAATATGTGTCATCGTGGGTACCTGATGAAATAATCGAGGTAGAATCGGACAAATACAAGTACTGGACTCCTCATCCCCAAACAGGGGTGTTTGGGCCAGCTACTGATCACATTATAAAATATGGTTCTCAATTCTCCACGGTAGATTCTGTGTTGGAACAAAAGACATTTTTTCGTGATTTCGAGGATCTGGAGAAGCCTAGTTATCCTTAAGTTTCAGAAAACATCACAACAGAAAATACTACTAGCAGGGAAGGTGAAAGAGGTGTTTCGTTTGTTGTGTTCTATGAATATGTGATATGTTTAGTTAATTAATGGAAGTATAATATGGAGTATGTATAGAATAAAACTAGCTACTCTGTGTGGGCTGCTTTTAAATGGTCATAT</genome_strand>
        <mrna_strand>TTAGCTCATAATTTACTTATTATTACTGTTTAATAGCCATTTTTAAACATCTTCTTTTTCAGAATTGCATTTGCATGGCCACTAATTTACAGAAACGTGGACTGGTAAGCTTGGGGAAACGATTTGTGAACCAGATAACTTATTCAACTTCTCGAAATTCTGCCAACTCATCATCTACTGCGCTCTCTGGCAG.................................................................................................................................................................................................................................................................................................................................................................................................GAATGTGGTGCACACGTCAGTGTATGACAAGAATATAGAGGAATATGTGTCATCGTGGGTACCTGATGAAATAATCGAGGTAGAATCGGACAAATACAAGTACTGGACTCCTCATCCCCAAACAGGGGTGTTTGGGCCAGCTACTGATCACATTATAAAATATGGTTCTCAATTCTCCACGGTAGATTCTGTGTTGGAACAAAAGACATTTTTTCGTGATTTCGAGGATCTGGAGAAGCCTAGTTATCCTTAAGTTTCAGAAAACATCACAACAGAAAATACTACTAGCAGGGAAGGTGAAAGAGGTGTTTCGTTTGTTGTGTTCTATGAATATGTGATATGTTTAGTTAATTAATGGAAGTATAATATGGAGTATGTATAGAATAAAACTAGCTACTCTGTGTGGGCTGCTTTTAAATGGTCATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E723674" ref_strand="+" ref_description="SGN-E723674 [FC21BC06]">
      <seq>atgggccactaatttacagaaacggggactggtaagcttggggaaacgatttgtgaaccaaataacttattcaacttctcgaaattctgccaactcatcatctactgcgctctctggcaggaatgtggtgcacacgtcagtgtatgacaagaatatagaggaatatgtgtcatcgtgggtacctgatgaaataatcgaggtagaatcggacaaatacaagtactggactcctcatccccaaacaggggtgtttgggccagctactgatcacattataaaatatggttctcaattctccacggtagattctgtgttggaacaaaaaacattttttcgtgatttcgaggatctggagaagcctagttatccttaagtttcagaaaacatcacaacagaaaatactactagcagggaaggtgaaagaggtgtttcgtttgttgtgttctatgaatatgtgatatgtttagttaattaatggaagtataatatggagtatgtatagaataaaactagctactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0113N10.1" temp_strand="-" temp_description="C06SLm0113N10.1  AC219227.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0113N10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11789" stop="10287"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11489" g_stop="11371" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="120" r_length="120" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11370" i_stop="10986" i_length="385">
            <donor d_prob="0.848" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10985" g_stop="10587" g_length="399"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="519" r_length="399" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0113N10.1" gen_strand="-" ref_id="SGN-E723674" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>518</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0113N10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E723674" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11489" e_stop="11371"/>
          <exon e_start="10985" e_stop="10587"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AT-GGCCACTAATTTACAGAAACGTGGACTGGTAAGCTTGGGGAAACGATTTGTGAACCAGATAACTTATTCAACTTCTCGAAATTCTGCCAACTCATCATCTACTGCGCTCTCTGGCAGGTATACTCTGAACCAGCAGTGGCTCAAGCATATTAGTGGCCTAAAACAAAAATAAAACAAGCTTTAAATTTGAATTGTTAATAACTTTAATATAGTTGATTTCTTTTAGTTTTTAATTAATAATATAACCATTCTTATTTTTCATGAGATATAATACTCCAAATATGTCATATTTCTTCTAATCTGAATTCTGAATTCTTATAAACATCAACTTGTACTATTATGGATTAATACTTATTTATACGTATAAAATAAAATTTTGATTATGGTTACTAAGTTCTACCTTACCCGAACCTGTAACTTTCTCTCTAGCTCTGTCCTTGATCAGTTCGAGTTAATTACTTTCAATTTGTTTTTTTTTTAAATCTAATTATGTTATGTGCAGGAATGTGGTGCACACGTCAGTGTATGACAAGAATATAGAGGAATATGTGTCATCGTGGGTACCTGATGAAATAATCGAGGTAGAATCGGACAAATACAAGTACTGGACTCCTCATCCCCAAACAGGGGTGTTTGGGCCAGCTACTGATCACATTATAAAATATGGTTCTCAATTCTCCACGGTAGATTCTGTGTTGGAACAAAAGACATTTTTTCGTGATTTCGAGGATCTGGAGAAGCCTAGTTATCCTTAAGTTTCAGAAAACATCACAACAGAAAATACTACTAGCAGGGAAGGTGAAAGAGGTGTTTCGTTTGTTGTGTTCTATGAATATGTGATATGTTTAGTTAATTAATGGAAGTATAATATGGAGTATGTATAGAATAAAACTAGCTACTC</genome_strand>
        <mrna_strand>ATGGGCCACTAATTTACAGAAACGGGGACTGGTAAGCTTGGGGAAACGATTTGTGAACCAAATAACTTATTCAACTTCTCGAAATTCTGCCAACTCATCATCTACTGCGCTCTCTGGCAG.................................................................................................................................................................................................................................................................................................................................................................................................GAATGTGGTGCACACGTCAGTGTATGACAAGAATATAGAGGAATATGTGTCATCGTGGGTACCTGATGAAATAATCGAGGTAGAATCGGACAAATACAAGTACTGGACTCCTCATCCCCAAACAGGGGTGTTTGGGCCAGCTACTGATCACATTATAAAATATGGTTCTCAATTCTCCACGGTAGATTCTGTGTTGGAACAAAAAACATTTTTTCGTGATTTCGAGGATCTGGAGAAGCCTAGTTATCCTTAAGTTTCAGAAAACATCACAACAGAAAATACTACTAGCAGGGAAGGTGAAAGAGGTGTTTCGTTTGTTGTGTTCTATGAATATGTGATATGTTTAGTTAATTAATGGAAGTATAATATGGAGTATGTATAGAATAAAACTAGCTACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E260009" ref_strand="+" ref_description="SGN-E260009 [cLEG-51-P18]">
      <seq>tattattactgtttaatagccatttttaaacatcttctttttcagaattgcatttgcatggccactaatttacagaaacgtggactggtaagcttggggaaacgatttgtgaaccagataacttattcaacttctcgaaattctgccaactcatcatctactgcgctctctggcaggaatgtggtgcacacgtcagtgtatgacaagaatatagaggaatatgtgtcatcgtgggtacctgatgaaataatcgaggtagaatcggacaaatacaagtactggactcctcatccccaaacaggggtgtttgggccagctactgatcacattataaaatatggttctcaattctccacggtagattctgtgttggaacaaaagacattttttcgtgatttcgaggatctggagaagcctagttatccttaagtttcagaaaacatcacaacagaaaatactactagcagggaaagtgaaagaggtgtttcgtttggtgtgttctatgaatatgtgatatggttagttaattaatggaaggataatatggagtatgtataga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0113N10.1" temp_strand="-" temp_description="C06SLm0113N10.1  AC219227.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0113N10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11846" stop="10303"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11546" g_stop="11371" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="176" r_length="176" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11370" i_stop="10986" i_length="385">
            <donor d_prob="0.848" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10985" g_stop="10603" g_length="383"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="559" r_length="383" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0113N10.1" gen_strand="-" ref_id="SGN-E260009" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0113N10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E260009" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11546" e_stop="11371"/>
          <exon e_start="10985" e_stop="10603"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTATTACTGTTTAATAGCCATTTTTAAACATCTTCTTTTTCAGAATTGCATTTGCATGGCCACTAATTTACAGAAACGTGGACTGGTAAGCTTGGGGAAACGATTTGTGAACCAGATAACTTATTCAACTTCTCGAAATTCTGCCAACTCATCATCTACTGCGCTCTCTGGCAGGTATACTCTGAACCAGCAGTGGCTCAAGCATATTAGTGGCCTAAAACAAAAATAAAACAAGCTTTAAATTTGAATTGTTAATAACTTTAATATAGTTGATTTCTTTTAGTTTTTAATTAATAATATAACCATTCTTATTTTTCATGAGATATAATACTCCAAATATGTCATATTTCTTCTAATCTGAATTCTGAATTCTTATAAACATCAACTTGTACTATTATGGATTAATACTTATTTATACGTATAAAATAAAATTTTGATTATGGTTACTAAGTTCTACCTTACCCGAACCTGTAACTTTCTCTCTAGCTCTGTCCTTGATCAGTTCGAGTTAATTACTTTCAATTTGTTTTTTTTTTAAATCTAATTATGTTATGTGCAGGAATGTGGTGCACACGTCAGTGTATGACAAGAATATAGAGGAATATGTGTCATCGTGGGTACCTGATGAAATAATCGAGGTAGAATCGGACAAATACAAGTACTGGACTCCTCATCCCCAAACAGGGGTGTTTGGGCCAGCTACTGATCACATTATAAAATATGGTTCTCAATTCTCCACGGTAGATTCTGTGTTGGAACAAAAGACATTTTTTCGTGATTTCGAGGATCTGGAGAAGCCTAGTTATCCTTAAGTTTCAGAAAACATCACAACAGAAAATACTACTAGCAGGGAAGGTGAAAGAGGTGTTTCGTTTGTTGTGTTCTATGAATATGTGATATGTTTAGTTAATTAATGGAAGTATAATATGGAGTATGTATAGA</genome_strand>
        <mrna_strand>TATTATTACTGTTTAATAGCCATTTTTAAACATCTTCTTTTTCAGAATTGCATTTGCATGGCCACTAATTTACAGAAACGTGGACTGGTAAGCTTGGGGAAACGATTTGTGAACCAGATAACTTATTCAACTTCTCGAAATTCTGCCAACTCATCATCTACTGCGCTCTCTGGCAG.................................................................................................................................................................................................................................................................................................................................................................................................GAATGTGGTGCACACGTCAGTGTATGACAAGAATATAGAGGAATATGTGTCATCGTGGGTACCTGATGAAATAATCGAGGTAGAATCGGACAAATACAAGTACTGGACTCCTCATCCCCAAACAGGGGTGTTTGGGCCAGCTACTGATCACATTATAAAATATGGTTCTCAATTCTCCACGGTAGATTCTGTGTTGGAACAAAAGACATTTTTTCGTGATTTCGAGGATCTGGAGAAGCCTAGTTATCCTTAAGTTTCAGAAAACATCACAACAGAAAATACTACTAGCAGGGAAAGTGAAAGAGGTGTTTCGTTTGGTGTGTTCTATGAATATGTGATATGGTTAGTTAATTAATGGAAGGATAATATGGAGTATGTATAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E254315" ref_strand="+" ref_description="SGN-E254315 [cLEG-27-F14]">
      <seq>tattattactgtttaatagccatttttaaacatcttctttttcagaattgcatttgcatggccactaatttacagaaacgtggactggtaagcttggggaaacgatttgtgaaccagataacttattcaacttctcgaaattctgccaactcatcatctactgcgctctctggcaggaatgtggtgcacacgtcagtgtatgacaagaatatagaggaatatgtgtcatcgtgggtacctgatgaaataatcgaggtagaatcggacaaatacaagtactggactcctcatccccaaacaggggtgtttgggccagctactgatcacattataaaatatggttctcaattctccacggtagattctgtgttggaacaaaagacattttttcgtgatttcgaggatctggagaagcctagttatccttaagtttcagaaaacatcacaacagaaaatactactagcagggaaggtgaaagaggtgtttcgtttgttgtgttctatgaatatgtgatatgtttagttaattaatggaagtataatatggagtatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0113N10.1" temp_strand="-" temp_description="C06SLm0113N10.1  AC219227.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0113N10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11846" stop="10309"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11546" g_stop="11371" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="176" r_length="176" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11370" i_stop="10986" i_length="385">
            <donor d_prob="0.848" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10985" g_stop="10609" g_length="377"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="553" r_length="377" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0113N10.1" gen_strand="-" ref_id="SGN-E254315" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0113N10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E254315" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11546" e_stop="11371"/>
          <exon e_start="10985" e_stop="10609"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTATTACTGTTTAATAGCCATTTTTAAACATCTTCTTTTTCAGAATTGCATTTGCATGGCCACTAATTTACAGAAACGTGGACTGGTAAGCTTGGGGAAACGATTTGTGAACCAGATAACTTATTCAACTTCTCGAAATTCTGCCAACTCATCATCTACTGCGCTCTCTGGCAGGTATACTCTGAACCAGCAGTGGCTCAAGCATATTAGTGGCCTAAAACAAAAATAAAACAAGCTTTAAATTTGAATTGTTAATAACTTTAATATAGTTGATTTCTTTTAGTTTTTAATTAATAATATAACCATTCTTATTTTTCATGAGATATAATACTCCAAATATGTCATATTTCTTCTAATCTGAATTCTGAATTCTTATAAACATCAACTTGTACTATTATGGATTAATACTTATTTATACGTATAAAATAAAATTTTGATTATGGTTACTAAGTTCTACCTTACCCGAACCTGTAACTTTCTCTCTAGCTCTGTCCTTGATCAGTTCGAGTTAATTACTTTCAATTTGTTTTTTTTTTAAATCTAATTATGTTATGTGCAGGAATGTGGTGCACACGTCAGTGTATGACAAGAATATAGAGGAATATGTGTCATCGTGGGTACCTGATGAAATAATCGAGGTAGAATCGGACAAATACAAGTACTGGACTCCTCATCCCCAAACAGGGGTGTTTGGGCCAGCTACTGATCACATTATAAAATATGGTTCTCAATTCTCCACGGTAGATTCTGTGTTGGAACAAAAGACATTTTTTCGTGATTTCGAGGATCTGGAGAAGCCTAGTTATCCTTAAGTTTCAGAAAACATCACAACAGAAAATACTACTAGCAGGGAAGGTGAAAGAGGTGTTTCGTTTGTTGTGTTCTATGAATATGTGATATGTTTAGTTAATTAATGGAAGTATAATATGGAGTATG</genome_strand>
        <mrna_strand>TATTATTACTGTTTAATAGCCATTTTTAAACATCTTCTTTTTCAGAATTGCATTTGCATGGCCACTAATTTACAGAAACGTGGACTGGTAAGCTTGGGGAAACGATTTGTGAACCAGATAACTTATTCAACTTCTCGAAATTCTGCCAACTCATCATCTACTGCGCTCTCTGGCAG.................................................................................................................................................................................................................................................................................................................................................................................................GAATGTGGTGCACACGTCAGTGTATGACAAGAATATAGAGGAATATGTGTCATCGTGGGTACCTGATGAAATAATCGAGGTAGAATCGGACAAATACAAGTACTGGACTCCTCATCCCCAAACAGGGGTGTTTGGGCCAGCTACTGATCACATTATAAAATATGGTTCTCAATTCTCCACGGTAGATTCTGTGTTGGAACAAAAGACATTTTTTCGTGATTTCGAGGATCTGGAGAAGCCTAGTTATCCTTAAGTTTCAGAAAACATCACAACAGAAAATACTACTAGCAGGGAAGGTGAAAGAGGTGTTTCGTTTGTTGTGTTCTATGAATATGTGATATGTTTAGTTAATTAATGGAAGTATAATATGGAGTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E395081" ref_strand="+" ref_description="SGN-E395081 [TUS-35-J21]">
      <seq>attagctcataatttacttattattactgtttaatagccatttttaaacatcttctttttcagaattgcatttgcatggccactaatttacagaaacgtggactggtaagcttggggaaacgatttgtgaaccagataacttattcaacttctcgaaattctgccaactcatcatctactgcgctctctggcaggaatgtggtgcacacgtcagtgtatgacaagaatatagaggaatatgtgtcatcgtgggtacctgatgaaataatcgaggtagaatcggacaaatacaagtactggactcctcatccccaaacaggggtgtttgggccagctactgatcacattataaaatatggttctcaattctccacggtagattctgtgttggaacaaaagacattttttcgtgatttcgaggatctggagaagcctagttatccttaagtttcagaaaacatcacaacagaaaatactactagcagggaaggtgaaagaggtgtttcgtttgttgtgttctatgaatatgtgatatgtttagttaattaatggaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0113N10.1" temp_strand="-" temp_description="C06SLm0113N10.1  AC219227.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0113N10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11864" stop="10325"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11564" g_stop="11371" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="194" r_length="194" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11370" i_stop="10986" i_length="385">
            <donor d_prob="0.848" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10985" g_stop="10625" g_length="361"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="555" r_length="361" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0113N10.1" gen_strand="-" ref_id="SGN-E395081" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0113N10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E395081" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11564" e_stop="11371"/>
          <exon e_start="10985" e_stop="10625"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTAGCTCATAATTTACTTATTATTACTGTTTAATAGCCATTTTTAAACATCTTCTTTTTCAGAATTGCATTTGCATGGCCACTAATTTACAGAAACGTGGACTGGTAAGCTTGGGGAAACGATTTGTGAACCAGATAACTTATTCAACTTCTCGAAATTCTGCCAACTCATCATCTACTGCGCTCTCTGGCAGGTATACTCTGAACCAGCAGTGGCTCAAGCATATTAGTGGCCTAAAACAAAAATAAAACAAGCTTTAAATTTGAATTGTTAATAACTTTAATATAGTTGATTTCTTTTAGTTTTTAATTAATAATATAACCATTCTTATTTTTCATGAGATATAATACTCCAAATATGTCATATTTCTTCTAATCTGAATTCTGAATTCTTATAAACATCAACTTGTACTATTATGGATTAATACTTATTTATACGTATAAAATAAAATTTTGATTATGGTTACTAAGTTCTACCTTACCCGAACCTGTAACTTTCTCTCTAGCTCTGTCCTTGATCAGTTCGAGTTAATTACTTTCAATTTGTTTTTTTTTTAAATCTAATTATGTTATGTGCAGGAATGTGGTGCACACGTCAGTGTATGACAAGAATATAGAGGAATATGTGTCATCGTGGGTACCTGATGAAATAATCGAGGTAGAATCGGACAAATACAAGTACTGGACTCCTCATCCCCAAACAGGGGTGTTTGGGCCAGCTACTGATCACATTATAAAATATGGTTCTCAATTCTCCACGGTAGATTCTGTGTTGGAACAAAAGACATTTTTTCGTGATTTCGAGGATCTGGAGAAGCCTAGTTATCCTTAAGTTTCAGAAAACATCACAACAGAAAATACTACTAGCAGGGAAGGTGAAAGAGGTGTTTCGTTTGTTGTGTTCTATGAATATGTGATATGTTTAGTTAATTAATGGAAG</genome_strand>
        <mrna_strand>ATTAGCTCATAATTTACTTATTATTACTGTTTAATAGCCATTTTTAAACATCTTCTTTTTCAGAATTGCATTTGCATGGCCACTAATTTACAGAAACGTGGACTGGTAAGCTTGGGGAAACGATTTGTGAACCAGATAACTTATTCAACTTCTCGAAATTCTGCCAACTCATCATCTACTGCGCTCTCTGGCAG.................................................................................................................................................................................................................................................................................................................................................................................................GAATGTGGTGCACACGTCAGTGTATGACAAGAATATAGAGGAATATGTGTCATCGTGGGTACCTGATGAAATAATCGAGGTAGAATCGGACAAATACAAGTACTGGACTCCTCATCCCCAAACAGGGGTGTTTGGGCCAGCTACTGATCACATTATAAAATATGGTTCTCAATTCTCCACGGTAGATTCTGTGTTGGAACAAAAGACATTTTTTCGTGATTTCGAGGATCTGGAGAAGCCTAGTTATCCTTAAGTTTCAGAAAACATCACAACAGAAAATACTACTAGCAGGGAAGGTGAAAGAGGTGTTTCGTTTGTTGTGTTCTATGAATATGTGATATGTTTAGTTAATTAATGGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E253957" ref_strand="+" ref_description="SGN-E253957 [cLEG-28-D16]">
      <seq>atttacttattattacctgtttaatagccatttttaaacatcttctttttcagaattgcatttgcatggccactaatttaccagaaaccgtggactggtaagcttggggaaaccgatttgtgaacccagataaccttattcaaccttctcgaaattctgccaacctcatcatctactgcgcctctctggcaggaatgtggtgccaccaccgtcagtgtatgacaagaatatagaggaatatgtgtcatcgtgggtccctgatgaaataatcgaggtagaatcggaccaataccagtacctggacctcctcatcccccaaaccaggggtgtttgggcccagctacctgatcaccattataaaatatggttctcaattctccacggtagattctgtgttggaaccaaaagacattttttcgtgatttcgaggatctggagaagcctagttatccttaagtttcagaaaacatcacaacagaaaatactactagcagggaaggtgaaagaggtgtttcgtttgttgtgttctatgaatatgtgatatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0113N10.1" temp_strand="-" temp_description="C06SLm0113N10.1  AC219227.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0113N10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11853" stop="10344"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11553" g_stop="11371" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="192" r_length="192" r_score="0.902"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11370" i_stop="10986" i_length="385">
            <donor d_prob="0.848" d_score="0.87"/>
            <acceptor a_prob="1.000" a_score="0.87"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10985" g_stop="10644" g_length="342"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="545" r_length="353" r_score="0.927"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0113N10.1" gen_strand="-" ref_id="SGN-E253957" ref_strand="+">
        <total_alignment_score>0.918</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0113N10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E253957" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11553" e_stop="11371"/>
          <exon e_start="10985" e_stop="10644"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTACTTATTATTA-CTGTTTAATAGCCATTTTTAAACATCTTCTTTTTCAGAATTGCATTTGCATGGCCACTAATTTA-CAGAAA-CGTGGACTGGTAAGCTTGGGGAAA-CGATTTGTGAA-CCAGATAA-CTTATTCAA-CTTCTCGAAATTCTGCCAA-CTCATCATCTACTGCG-CTCTCTGGCAGGTATACTCTGAACCAGCAGTGGCTCAAGCATATTAGTGGCCTAAAACAAAAATAAAACAAGCTTTAAATTTGAATTGTTAATAACTTTAATATAGTTGATTTCTTTTAGTTTTTAATTAATAATATAACCATTCTTATTTTTCATGAGATATAATACTCCAAATATGTCATATTTCTTCTAATCTGAATTCTGAATTCTTATAAACATCAACTTGTACTATTATGGATTAATACTTATTTATACGTATAAAATAAAATTTTGATTATGGTTACTAAGTTCTACCTTACCCGAACCTGTAACTTTCTCTCTAGCTCTGTCCTTGATCAGTTCGAGTTAATTACTTTCAATTTGTTTTTTTTTTAAATCTAATTATGTTATGTGCAGGAATGTGGTG-CA-CA-CGTCAGTGTATGACAAGAATATAGAGGAATATGTGTCATCGTGGGTACCTGATGAAATAATCGAGGTAGAATCGGACAAATACAAGTA-CTGGA-CTCCTCAT-CCCCAAA-CAGGGGTGTTTGGG-CCAGCTA-CTGATCA-CATTATAAAATATGGTTCTCAATTCTCCACGGTAGATTCTGTGTTGGAAC-AAAAGACATTTTTTCGTGATTTCGAGGATCTGGAGAAGCCTAGTTATCCTTAAGTTTCAGAAAACATCACAACAGAAAATACTACTAGCAGGGAAGGTGAAAGAGGTGTTTCGTTTGTTGTGTTCTATGAATATGTGATATG</genome_strand>
        <mrna_strand>ATTTACTTATTATTACCTGTTTAATAGCCATTTTTAAACATCTTCTTTTTCAGAATTGCATTTGCATGGCCACTAATTTACCAGAAACCGTGGACTGGTAAGCTTGGGGAAACCGATTTGTGAACCCAGATAACCTTATTCAACCTTCTCGAAATTCTGCCAACCTCATCATCTACTGCGCCTCTCTGGCAG.................................................................................................................................................................................................................................................................................................................................................................................................GAATGTGGTGCCACCACCGTCAGTGTATGACAAGAATATAGAGGAATATGTGTCATCGTGGGTCCCTGATGAAATAATCGAGGTAGAATCGGACCAATACCAGTACCTGGACCTCCTCATCCCCCAAACCAGGGGTGTTTGGGCCCAGCTACCTGATCACCATTATAAAATATGGTTCTCAATTCTCCACGGTAGATTCTGTGTTGGAACCAAAAGACATTTTTTCGTGATTTCGAGGATCTGGAGAAGCCTAGTTATCCTTAAGTTTCAGAAAACATCACAACAGAAAATACTACTAGCAGGGAAGGTGAAAGAGGTGTTTCGTTTGTTGTGTTCTATGAATATGTGATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E698453" ref_strand="+" ref_description="SGN-E698453 [FA06BE02]">
      <seq>cgcttattattactgctttaatagccatttttaaacatctctctttttcagaattgcatttgcatggccactaatttacagaaacgtggactggtaagcttggggaaacgatttgtgaaccagataacttattcaacttctcgaaattctgccaactcatcatctactgcgctctctggcaggaatgtggtgcacacgtcactgtatgacaagaatatacaggaatatgtgtcatcgtgggtacctgatgaaataatcgaggtagaatcggacaaatacaagtactggactcctcatccccaaacaggggtgtttgggccacctactgatcacattataaaatatggttctcaattctccacggcagattctgcgctggaacaacagacattttttcctgatttcgaggcatctggagaacccctactcatccttaagtttcagaaaacatccacaacagaaaatatctacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0113N10.1" temp_strand="-" temp_description="C06SLm0113N10.1  AC219227.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0113N10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11848" stop="10399"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11550" g_stop="11371" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="182" r_length="182" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11370" i_stop="10986" i_length="385">
            <donor d_prob="0.848" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10985" g_stop="10699" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="473" r_length="291" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0113N10.1" gen_strand="-" ref_id="SGN-E698453" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>467</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0113N10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E698453" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11550" e_stop="11371"/>
          <exon e_start="10985" e_stop="10699"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACTTATTATTACTG-TTTAATAGCCATTTTTAAACATCT-TCTTTTTCAGAATTGCATTTGCATGGCCACTAATTTACAGAAACGTGGACTGGTAAGCTTGGGGAAACGATTTGTGAACCAGATAACTTATTCAACTTCTCGAAATTCTGCCAACTCATCATCTACTGCGCTCTCTGGCAGGTATACTCTGAACCAGCAGTGGCTCAAGCATATTAGTGGCCTAAAACAAAAATAAAACAAGCTTTAAATTTGAATTGTTAATAACTTTAATATAGTTGATTTCTTTTAGTTTTTAATTAATAATATAACCATTCTTATTTTTCATGAGATATAATACTCCAAATATGTCATATTTCTTCTAATCTGAATTCTGAATTCTTATAAACATCAACTTGTACTATTATGGATTAATACTTATTTATACGTATAAAATAAAATTTTGATTATGGTTACTAAGTTCTACCTTACCCGAACCTGTAACTTTCTCTCTAGCTCTGTCCTTGATCAGTTCGAGTTAATTACTTTCAATTTGTTTTTTTTTTAAATCTAATTATGTTATGTGCAGGAATGTGGTGCACACGTCAGTGTATGACAAGAATATAGAGGAATATGTGTCATCGTGGGTACCTGATGAAATAATCGAGGTAGAATCGGACAAATACAAGTACTGGACTCCTCATCCCCAAACAGGGGTGTTTGGGCCAGCTACTGATCACATTATAAAATATGGTTCTCAATTCTCCACGGTAGATTCTGTGTTGGAACAAAAGACATTTTTTCGTGATTTCGAGG-ATCTGGAGAA-GCCTAGTTATCCTTAAGTTTCAGAAAACAT-CACAACAGAAAATA-CTACTA</genome_strand>
        <mrna_strand>CGCTTATTATTACTGCTTTAATAGCCATTTTTAAACATCTCTCTTTTTCAGAATTGCATTTGCATGGCCACTAATTTACAGAAACGTGGACTGGTAAGCTTGGGGAAACGATTTGTGAACCAGATAACTTATTCAACTTCTCGAAATTCTGCCAACTCATCATCTACTGCGCTCTCTGGCAG.................................................................................................................................................................................................................................................................................................................................................................................................GAATGTGGTGCACACGTCACTGTATGACAAGAATATACAGGAATATGTGTCATCGTGGGTACCTGATGAAATAATCGAGGTAGAATCGGACAAATACAAGTACTGGACTCCTCATCCCCAAACAGGGGTGTTTGGGCCACCTACTGATCACATTATAAAATATGGTTCTCAATTCTCCACGGCAGATTCTGCGCTGGAACAACAGACATTTTTTCCTGATTTCGAGGCATCTGGAGAACCCCTACTCATCCTTAAGTTTCAGAAAACATCCACAACAGAAAATATCTACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E392316" ref_strand="+" ref_description="SGN-E392316 [TUS-35-K4]">
      <seq>attagctcataatttacttattattactgtttaatagccatttttaaacatcttctttttcagaattgcatttgcatggccactaatttacagaaacgtggactggtaagcttggggaaacgatttgtgaaccagataacttattcaacttctcgaaattctgccaactcatcatctactgcgctctctggcaggaatgtggtgcacacgtcagtgtatgacaagaatatagaggaatatgtgtcatcgtgggtacctgatgaaataatcgaggtagaatcggacaaatacaagtactggactcctcatccccaaacaggggtgtttgggccagctactgatcacattataaaatatggttctcaattctccacggtagattctgtgttggaacaaaagacattttggcgggggggcgaggatctggataagcctagttatccttaagtttcagaaaacatccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0113N10.1" temp_strand="-" temp_description="C06SLm0113N10.1  AC219227.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0113N10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11864" stop="10416"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11564" g_stop="11371" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="194" r_length="194" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11370" i_stop="10986" i_length="385">
            <donor d_prob="0.848" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10985" g_stop="10716" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="464" r_length="270" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0113N10.1" gen_strand="-" ref_id="SGN-E392316" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>464</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0113N10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E392316" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11564" e_stop="11371"/>
          <exon e_start="10985" e_stop="10716"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTAGCTCATAATTTACTTATTATTACTGTTTAATAGCCATTTTTAAACATCTTCTTTTTCAGAATTGCATTTGCATGGCCACTAATTTACAGAAACGTGGACTGGTAAGCTTGGGGAAACGATTTGTGAACCAGATAACTTATTCAACTTCTCGAAATTCTGCCAACTCATCATCTACTGCGCTCTCTGGCAGGTATACTCTGAACCAGCAGTGGCTCAAGCATATTAGTGGCCTAAAACAAAAATAAAACAAGCTTTAAATTTGAATTGTTAATAACTTTAATATAGTTGATTTCTTTTAGTTTTTAATTAATAATATAACCATTCTTATTTTTCATGAGATATAATACTCCAAATATGTCATATTTCTTCTAATCTGAATTCTGAATTCTTATAAACATCAACTTGTACTATTATGGATTAATACTTATTTATACGTATAAAATAAAATTTTGATTATGGTTACTAAGTTCTACCTTACCCGAACCTGTAACTTTCTCTCTAGCTCTGTCCTTGATCAGTTCGAGTTAATTACTTTCAATTTGTTTTTTTTTTAAATCTAATTATGTTATGTGCAGGAATGTGGTGCACACGTCAGTGTATGACAAGAATATAGAGGAATATGTGTCATCGTGGGTACCTGATGAAATAATCGAGGTAGAATCGGACAAATACAAGTACTGGACTCCTCATCCCCAAACAGGGGTGTTTGGGCCAGCTACTGATCACATTATAAAATATGGTTCTCAATTCTCCACGGTAGATTCTGTGTTGGAACAAAAGACATTTTTTCGTGATTTCGAGGATCTGGAGAAGCCTAGTTATCCTTAAGTTTCAGAAAACATCAC</genome_strand>
        <mrna_strand>ATTAGCTCATAATTTACTTATTATTACTGTTTAATAGCCATTTTTAAACATCTTCTTTTTCAGAATTGCATTTGCATGGCCACTAATTTACAGAAACGTGGACTGGTAAGCTTGGGGAAACGATTTGTGAACCAGATAACTTATTCAACTTCTCGAAATTCTGCCAACTCATCATCTACTGCGCTCTCTGGCAG.................................................................................................................................................................................................................................................................................................................................................................................................GAATGTGGTGCACACGTCAGTGTATGACAAGAATATAGAGGAATATGTGTCATCGTGGGTACCTGATGAAATAATCGAGGTAGAATCGGACAAATACAAGTACTGGACTCCTCATCCCCAAACAGGGGTGTTTGGGCCAGCTACTGATCACATTATAAAATATGGTTCTCAATTCTCCACGGTAGATTCTGTGTTGGAACAAAAGACATTTTGGCGGGGGGGCGAGGATCTGGATAAGCCTAGTTATCCTTAAGTTTCAGAAAACATCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E396393" ref_strand="+" ref_description="SGN-E396393 [TUS-35-L3]">
      <seq>attagctcataatttacttattattactgtttaatagccatttttaaacatcttctttttcagaattgcatttgcatggccactaatttacagaaacgtggactggtaagcttggggaaacgatttgtgaaccagataacttattcaacttctcgaaattctgccaactcatcatctactgcgctctctggcaggaatgtggtgcacacgtcagtgtatgacaagaatatagaggaatatgtgtcatcgtgggtacctgatgaaataatcgaggtagaatcggacaaatacaagtactggactcctcatccccaaacaggggtgtttgggccagctactgatcacattataaaatatggttctcaattctccacggtagattctgtgttggaacaaaagacattttttcgtgatttcgaggatctggagaagcctagttatccttaagtttcaaaaaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0113N10.1" temp_strand="-" temp_description="C06SLm0113N10.1  AC219227.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0113N10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11864" stop="10420"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11564" g_stop="11371" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="194" r_length="194" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11370" i_stop="10986" i_length="385">
            <donor d_prob="0.848" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10985" g_stop="10720" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="460" r_length="266" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0113N10.1" gen_strand="-" ref_id="SGN-E396393" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>460</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0113N10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E396393" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11564" e_stop="11371"/>
          <exon e_start="10985" e_stop="10720"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTAGCTCATAATTTACTTATTATTACTGTTTAATAGCCATTTTTAAACATCTTCTTTTTCAGAATTGCATTTGCATGGCCACTAATTTACAGAAACGTGGACTGGTAAGCTTGGGGAAACGATTTGTGAACCAGATAACTTATTCAACTTCTCGAAATTCTGCCAACTCATCATCTACTGCGCTCTCTGGCAGGTATACTCTGAACCAGCAGTGGCTCAAGCATATTAGTGGCCTAAAACAAAAATAAAACAAGCTTTAAATTTGAATTGTTAATAACTTTAATATAGTTGATTTCTTTTAGTTTTTAATTAATAATATAACCATTCTTATTTTTCATGAGATATAATACTCCAAATATGTCATATTTCTTCTAATCTGAATTCTGAATTCTTATAAACATCAACTTGTACTATTATGGATTAATACTTATTTATACGTATAAAATAAAATTTTGATTATGGTTACTAAGTTCTACCTTACCCGAACCTGTAACTTTCTCTCTAGCTCTGTCCTTGATCAGTTCGAGTTAATTACTTTCAATTTGTTTTTTTTTTAAATCTAATTATGTTATGTGCAGGAATGTGGTGCACACGTCAGTGTATGACAAGAATATAGAGGAATATGTGTCATCGTGGGTACCTGATGAAATAATCGAGGTAGAATCGGACAAATACAAGTACTGGACTCCTCATCCCCAAACAGGGGTGTTTGGGCCAGCTACTGATCACATTATAAAATATGGTTCTCAATTCTCCACGGTAGATTCTGTGTTGGAACAAAAGACATTTTTTCGTGATTTCGAGGATCTGGAGAAGCCTAGTTATCCTTAAGTTTCAGAAAACA</genome_strand>
        <mrna_strand>ATTAGCTCATAATTTACTTATTATTACTGTTTAATAGCCATTTTTAAACATCTTCTTTTTCAGAATTGCATTTGCATGGCCACTAATTTACAGAAACGTGGACTGGTAAGCTTGGGGAAACGATTTGTGAACCAGATAACTTATTCAACTTCTCGAAATTCTGCCAACTCATCATCTACTGCGCTCTCTGGCAG.................................................................................................................................................................................................................................................................................................................................................................................................GAATGTGGTGCACACGTCAGTGTATGACAAGAATATAGAGGAATATGTGTCATCGTGGGTACCTGATGAAATAATCGAGGTAGAATCGGACAAATACAAGTACTGGACTCCTCATCCCCAAACAGGGGTGTTTGGGCCAGCTACTGATCACATTATAAAATATGGTTCTCAATTCTCCACGGTAGATTCTGTGTTGGAACAAAAGACATTTTTTCGTGATTTCGAGGATCTGGAGAAGCCTAGTTATCCTTAAGTTTCAAAAAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E392554" ref_strand="+" ref_description="SGN-E392554 [TUS-35-I20]">
      <seq>attatttcataatttacttattattactgtttaatagccatttttaaacatcttctttttcagaattgcattttcttggccactaatttacagaaacgtggactggtaagcttggggaaacgatttgtgaaccagataacttattcaacttctcgaaattctgccaactcatcatctactgcgctctctggcaggaatgtggtgcacacgtcagtgtatgacaagaatatagaggaatatgtgtcatcgtgggtacctgatgaaataatcgaggtagaatcggacaaatacaagtactggactcctcatccccaaacaggggtgtttgggccagctactgatcacattataaaatatggttctcaattctccacggtagattctgtgttggaacaaaagacattttttcgtgatttcgaggatctggagaagcctagttatcccttaagttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0113N10.1" temp_strand="-" temp_description="C06SLm0113N10.1  AC219227.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0113N10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11864" stop="10429"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11564" g_stop="11371" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="194" r_length="194" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11370" i_stop="10986" i_length="385">
            <donor d_prob="0.848" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10985" g_stop="10729" g_length="257"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="452" r_length="258" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0113N10.1" gen_strand="-" ref_id="SGN-E392554" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>451</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0113N10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E392554" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11564" e_stop="11371"/>
          <exon e_start="10985" e_stop="10729"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTAGCTCATAATTTACTTATTATTACTGTTTAATAGCCATTTTTAAACATCTTCTTTTTCAGAATTGCATTTGCATGGCCACTAATTTACAGAAACGTGGACTGGTAAGCTTGGGGAAACGATTTGTGAACCAGATAACTTATTCAACTTCTCGAAATTCTGCCAACTCATCATCTACTGCGCTCTCTGGCAGGTATACTCTGAACCAGCAGTGGCTCAAGCATATTAGTGGCCTAAAACAAAAATAAAACAAGCTTTAAATTTGAATTGTTAATAACTTTAATATAGTTGATTTCTTTTAGTTTTTAATTAATAATATAACCATTCTTATTTTTCATGAGATATAATACTCCAAATATGTCATATTTCTTCTAATCTGAATTCTGAATTCTTATAAACATCAACTTGTACTATTATGGATTAATACTTATTTATACGTATAAAATAAAATTTTGATTATGGTTACTAAGTTCTACCTTACCCGAACCTGTAACTTTCTCTCTAGCTCTGTCCTTGATCAGTTCGAGTTAATTACTTTCAATTTGTTTTTTTTTTAAATCTAATTATGTTATGTGCAGGAATGTGGTGCACACGTCAGTGTATGACAAGAATATAGAGGAATATGTGTCATCGTGGGTACCTGATGAAATAATCGAGGTAGAATCGGACAAATACAAGTACTGGACTCCTCATCCCCAAACAGGGGTGTTTGGGCCAGCTACTGATCACATTATAAAATATGGTTCTCAATTCTCCACGGTAGATTCTGTGTTGGAACAAAAGACATTTTTTCGTGATTTCGAGGATCTGGAGAAGCCTAGTTAT-CCTTAAGTTT</genome_strand>
        <mrna_strand>ATTATTTCATAATTTACTTATTATTACTGTTTAATAGCCATTTTTAAACATCTTCTTTTTCAGAATTGCATTTTCTTGGCCACTAATTTACAGAAACGTGGACTGGTAAGCTTGGGGAAACGATTTGTGAACCAGATAACTTATTCAACTTCTCGAAATTCTGCCAACTCATCATCTACTGCGCTCTCTGGCAG.................................................................................................................................................................................................................................................................................................................................................................................................GAATGTGGTGCACACGTCAGTGTATGACAAGAATATAGAGGAATATGTGTCATCGTGGGTACCTGATGAAATAATCGAGGTAGAATCGGACAAATACAAGTACTGGACTCCTCATCCCCAAACAGGGGTGTTTGGGCCAGCTACTGATCACATTATAAAATATGGTTCTCAATTCTCCACGGTAGATTCTGTGTTGGAACAAAAGACATTTTTTCGTGATTTCGAGGATCTGGAGAAGCCTAGTTATCCCTTAAGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E246754" ref_strand="+" ref_description="SGN-E246754 [cLEF-45-B16]">
      <seq>caactcatcatctactgcgctctctggcaggaatgtggtgcacacgtcagtgtatgacaagaatatagaggaatatgtgtcatcgtgggtacctgatgaaataatcgaggtagaatcggacaaatacaagtactggactcctcatccccaaacaggggtgtttgggccagctactgatcacattataaaatatggttctcaattctccacggtagattctgtgttggaacaaaagacattttttcgtgattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0113N10.1" temp_strand="-" temp_description="C06SLm0113N10.1  AC219227.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0113N10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11700" stop="10464"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11400" g_stop="11371" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11370" i_stop="10986" i_length="385">
            <donor d_prob="0.848" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10985" g_stop="10764" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="252" r_length="222" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0113N10.1" gen_strand="-" ref_id="SGN-E246754" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>252</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0113N10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E246754" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11400" e_stop="11371"/>
          <exon e_start="10985" e_stop="10764"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACTCATCATCTACTGCGCTCTCTGGCAGGTATACTCTGAACCAGCAGTGGCTCAAGCATATTAGTGGCCTAAAACAAAAATAAAACAAGCTTTAAATTTGAATTGTTAATAACTTTAATATAGTTGATTTCTTTTAGTTTTTAATTAATAATATAACCATTCTTATTTTTCATGAGATATAATACTCCAAATATGTCATATTTCTTCTAATCTGAATTCTGAATTCTTATAAACATCAACTTGTACTATTATGGATTAATACTTATTTATACGTATAAAATAAAATTTTGATTATGGTTACTAAGTTCTACCTTACCCGAACCTGTAACTTTCTCTCTAGCTCTGTCCTTGATCAGTTCGAGTTAATTACTTTCAATTTGTTTTTTTTTTAAATCTAATTATGTTATGTGCAGGAATGTGGTGCACACGTCAGTGTATGACAAGAATATAGAGGAATATGTGTCATCGTGGGTACCTGATGAAATAATCGAGGTAGAATCGGACAAATACAAGTACTGGACTCCTCATCCCCAAACAGGGGTGTTTGGGCCAGCTACTGATCACATTATAAAATATGGTTCTCAATTCTCCACGGTAGATTCTGTGTTGGAACAAAAGACATTTTTTCGTGATTT</genome_strand>
        <mrna_strand>CAACTCATCATCTACTGCGCTCTCTGGCAG.................................................................................................................................................................................................................................................................................................................................................................................................GAATGTGGTGCACACGTCAGTGTATGACAAGAATATAGAGGAATATGTGTCATCGTGGGTACCTGATGAAATAATCGAGGTAGAATCGGACAAATACAAGTACTGGACTCCTCATCCCCAAACAGGGGTGTTTGGGCCAGCTACTGATCACATTATAAAATATGGTTCTCAATTCTCCACGGTAGATTCTGTGTTGGAACAAAAGACATTTTTTCGTGATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E244271" ref_strand="+" ref_description="SGN-E244271 [cLEF-37-C9]">
      <seq>tgttttcactattatttataagagaaacagatcgctataacaattgcatttgcatggccactaatttacagaaacgtggactggtaagcttggggaaacgatttgtgaaccagataacttattcaacttctcgaaattctgccaactcatcatctactgcgctctctggcaggaatgtggtgcacacgtcagtgtatgacaagaatatagaggaatatgtgtcatcgtgggtacctgatgaaataatcgaggtagaatcggacaaatacaagtactggactcctcatccccaaacaggggtgtttgggccagctactgatcacattataaaatatggttctcaattctccacggtagattctgtgttggaacaaaagacattttttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0113N10.1" temp_strand="-" temp_description="C06SLm0113N10.1  AC219227.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0113N10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11929" stop="10471"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11629" g_stop="11589" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="0.951"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11588" i_stop="11502" i_length="87">
            <donor d_prob="0.900" d_score="0.95"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11501" g_stop="11371" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="172" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11370" i_stop="10986" i_length="385">
            <donor d_prob="0.848" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="10985" g_stop="10771" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="387" r_length="215" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0113N10.1" gen_strand="-" ref_id="SGN-E244271" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>387</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0113N10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E244271" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11629" e_stop="11589"/>
          <exon e_start="11501" e_stop="11371"/>
          <exon e_start="10985" e_stop="10771"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTTTCACTATTATAAATAAGAGAAACAGATCGCTATAACGTATACTTTTCTCTTCTTATAATTATTAGCTCATAATTTACTTATTATTACTGTTTAATAGCCATTTTTAAACATCTTCTTTTTCAGAATTGCATTTGCATGGCCACTAATTTACAGAAACGTGGACTGGTAAGCTTGGGGAAACGATTTGTGAACCAGATAACTTATTCAACTTCTCGAAATTCTGCCAACTCATCATCTACTGCGCTCTCTGGCAGGTATACTCTGAACCAGCAGTGGCTCAAGCATATTAGTGGCCTAAAACAAAAATAAAACAAGCTTTAAATTTGAATTGTTAATAACTTTAATATAGTTGATTTCTTTTAGTTTTTAATTAATAATATAACCATTCTTATTTTTCATGAGATATAATACTCCAAATATGTCATATTTCTTCTAATCTGAATTCTGAATTCTTATAAACATCAACTTGTACTATTATGGATTAATACTTATTTATACGTATAAAATAAAATTTTGATTATGGTTACTAAGTTCTACCTTACCCGAACCTGTAACTTTCTCTCTAGCTCTGTCCTTGATCAGTTCGAGTTAATTACTTTCAATTTGTTTTTTTTTTAAATCTAATTATGTTATGTGCAGGAATGTGGTGCACACGTCAGTGTATGACAAGAATATAGAGGAATATGTGTCATCGTGGGTACCTGATGAAATAATCGAGGTAGAATCGGACAAATACAAGTACTGGACTCCTCATCCCCAAACAGGGGTGTTTGGGCCAGCTACTGATCACATTATAAAATATGGTTCTCAATTCTCCACGGTAGATTCTGTGTTGGAACAAAAGACATTTTTTC</genome_strand>
        <mrna_strand>TGTTTTCACTATTATTTATAAGAGAAACAGATCGCTATAAC.......................................................................................AATTGCATTTGCATGGCCACTAATTTACAGAAACGTGGACTGGTAAGCTTGGGGAAACGATTTGTGAACCAGATAACTTATTCAACTTCTCGAAATTCTGCCAACTCATCATCTACTGCGCTCTCTGGCAG.................................................................................................................................................................................................................................................................................................................................................................................................GAATGTGGTGCACACGTCAGTGTATGACAAGAATATAGAGGAATATGTGTCATCGTGGGTACCTGATGAAATAATCGAGGTAGAATCGGACAAATACAAGTACTGGACTCCTCATCCCCAAACAGGGGTGTTTGGGCCAGCTACTGATCACATTATAAAATATGGTTCTCAATTCTCCACGGTAGATTCTGTGTTGGAACAAAAGACATTTTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E262187" ref_strand="+" ref_description="SGN-E262187 [cLEG-58-H24]">
      <seq>cactaatttacagaaacgtggactggtaagcttggggaaacgatttgtgaaccagataacttattcaacttctcgaaattctgccaactcatcatctactgcgctctctggcaggtatactctgaaccaacagtggctcaagcatattaatggcctaaaacaaaaataaaacaagctttaaatttgaattgttaataactttaatatagttgatttcttttagtttttaattaataatataaccattcttatttttcatgagatataatactccaaatatgtcatatttcttctaatctgaattctgaattcttataaacatcaacttgtactattatggattaatacttatttatacgtataaaataaaattttgattatggttactaagttctaccttacccgaacctgtaactttctctctagctctgtccttgatcagttcgagttaattactttcaatttgtatgttttttaaatctaattatgttatgtgcaagaatgtggtgcacacgtcagtgtatgacaagaatatagaggaatatgtgtcatcgtgggtacctgatgaaataatcgaggtagaatcggacaaatacaagtactggactcctcatccccatacaggggtgtttggggcagctactgatcacattataaaatatggttctcaattctcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0113N10.1" temp_strand="-" temp_description="C06SLm0113N10.1  AC219227.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0113N10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11784" stop="10507"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11484" g_stop="10807" g_length="678"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="678" r_length="678" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0113N10.1" gen_strand="-" ref_id="SGN-E262187" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>678</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0113N10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E262187" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11484" e_stop="10807"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTAATTTACAGAAACGTGGACTGGTAAGCTTGGGGAAACGATTTGTGAACCAGATAACTTATTCAACTTCTCGAAATTCTGCCAACTCATCATCTACTGCGCTCTCTGGCAGGTATACTCTGAACCAGCAGTGGCTCAAGCATATTAGTGGCCTAAAACAAAAATAAAACAAGCTTTAAATTTGAATTGTTAATAACTTTAATATAGTTGATTTCTTTTAGTTTTTAATTAATAATATAACCATTCTTATTTTTCATGAGATATAATACTCCAAATATGTCATATTTCTTCTAATCTGAATTCTGAATTCTTATAAACATCAACTTGTACTATTATGGATTAATACTTATTTATACGTATAAAATAAAATTTTGATTATGGTTACTAAGTTCTACCTTACCCGAACCTGTAACTTTCTCTCTAGCTCTGTCCTTGATCAGTTCGAGTTAATTACTTTCAATTTGTTTTTTTTTTAAATCTAATTATGTTATGTGCAGGAATGTGGTGCACACGTCAGTGTATGACAAGAATATAGAGGAATATGTGTCATCGTGGGTACCTGATGAAATAATCGAGGTAGAATCGGACAAATACAAGTACTGGACTCCTCATCCCCAAACAGGGGTGTTTGGGCCAGCTACTGATCACATTATAAAATATGGTTCTCAATTCTCCA</genome_strand>
        <mrna_strand>CACTAATTTACAGAAACGTGGACTGGTAAGCTTGGGGAAACGATTTGTGAACCAGATAACTTATTCAACTTCTCGAAATTCTGCCAACTCATCATCTACTGCGCTCTCTGGCAGGTATACTCTGAACCAACAGTGGCTCAAGCATATTAATGGCCTAAAACAAAAATAAAACAAGCTTTAAATTTGAATTGTTAATAACTTTAATATAGTTGATTTCTTTTAGTTTTTAATTAATAATATAACCATTCTTATTTTTCATGAGATATAATACTCCAAATATGTCATATTTCTTCTAATCTGAATTCTGAATTCTTATAAACATCAACTTGTACTATTATGGATTAATACTTATTTATACGTATAAAATAAAATTTTGATTATGGTTACTAAGTTCTACCTTACCCGAACCTGTAACTTTCTCTCTAGCTCTGTCCTTGATCAGTTCGAGTTAATTACTTTCAATTTGTATGTTTTTTAAATCTAATTATGTTATGTGCAAGAATGTGGTGCACACGTCAGTGTATGACAAGAATATAGAGGAATATGTGTCATCGTGGGTACCTGATGAAATAATCGAGGTAGAATCGGACAAATACAAGTACTGGACTCCTCATCCCCATACAGGGGTGTTTGGGGCAGCTACTGATCACATTATAAAATATGGTTCTCAATTCTCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E254110" ref_strand="+" ref_description="SGN-E254110 [cLEG-34-A3]">
      <seq>gccactaatttacagaaacgtggactggtaagcttggggaaacgatttgtgaacgagataactgattcaacttctcgaaattctgccaactcatcatctactgcgctctctggcaggtatactctgaaccagcagtggctcaagcatattagtggcctaaaacaaaaataaaacaagctttaaatttgaattgttaataactttaatatagttgatttcttttagtttttaattaataatataaccattcttatttttcatgagatataatactccaaatatgtcatatttcttctaatctgaattctgaattcttataaacatcaacttgtactattatggattaatacttatttatacgtataaaataaaattttgattatggttactaagttctaccttacccgaacctgtaactttctctctagctctgtccttgatcagttcgagttaattactttcaatttgttttttttttaaatctaattatgttatgtgcaggaatgtggtgcacacgtcagtgtatgacaagaatatagaggaatatgtgtcatcgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0113N10.1" temp_strand="-" temp_description="C06SLm0113N10.1  AC219227.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0113N10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11786" stop="10630"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11486" g_stop="10930" g_length="557"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="557" r_length="557" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0113N10.1" gen_strand="-" ref_id="SGN-E254110" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0113N10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E254110" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11486" e_stop="10930"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCACTAATTTACAGAAACGTGGACTGGTAAGCTTGGGGAAACGATTTGTGAACCAGATAACTTATTCAACTTCTCGAAATTCTGCCAACTCATCATCTACTGCGCTCTCTGGCAGGTATACTCTGAACCAGCAGTGGCTCAAGCATATTAGTGGCCTAAAACAAAAATAAAACAAGCTTTAAATTTGAATTGTTAATAACTTTAATATAGTTGATTTCTTTTAGTTTTTAATTAATAATATAACCATTCTTATTTTTCATGAGATATAATACTCCAAATATGTCATATTTCTTCTAATCTGAATTCTGAATTCTTATAAACATCAACTTGTACTATTATGGATTAATACTTATTTATACGTATAAAATAAAATTTTGATTATGGTTACTAAGTTCTACCTTACCCGAACCTGTAACTTTCTCTCTAGCTCTGTCCTTGATCAGTTCGAGTTAATTACTTTCAATTTGTTTTTTTTTTAAATCTAATTATGTTATGTGCAGGAATGTGGTGCACACGTCAGTGTATGACAAGAATATAGAGGAATATGTGTCATCGT</genome_strand>
        <mrna_strand>GCCACTAATTTACAGAAACGTGGACTGGTAAGCTTGGGGAAACGATTTGTGAACGAGATAACTGATTCAACTTCTCGAAATTCTGCCAACTCATCATCTACTGCGCTCTCTGGCAGGTATACTCTGAACCAGCAGTGGCTCAAGCATATTAGTGGCCTAAAACAAAAATAAAACAAGCTTTAAATTTGAATTGTTAATAACTTTAATATAGTTGATTTCTTTTAGTTTTTAATTAATAATATAACCATTCTTATTTTTCATGAGATATAATACTCCAAATATGTCATATTTCTTCTAATCTGAATTCTGAATTCTTATAAACATCAACTTGTACTATTATGGATTAATACTTATTTATACGTATAAAATAAAATTTTGATTATGGTTACTAAGTTCTACCTTACCCGAACCTGTAACTTTCTCTCTAGCTCTGTCCTTGATCAGTTCGAGTTAATTACTTTCAATTTGTTTTTTTTTTAAATCTAATTATGTTATGTGCAGGAATGTGGTGCACACGTCAGTGTATGACAAGAATATAGAGGAATATGTGTCATCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E262182" ref_strand="+" ref_description="SGN-E262182 [cLEG-58-H2]">
      <seq>actaatttacagaaacgtggactggtaagcttggggaaacgatttgtgaaccagataacttattcaacttctcgaaattctgccaactcatcatctactgcgctctctggcaggtatactctgaaccagcagtggctcaagcatattagtggcctaaaacaaaaataaaacaagctttaaatttgaattgttaataactttaatatagttgatttcttttagtttttaattaataatataaccattcttatttttcatgagatataatactccaaatatgtcatatttcttctaatctgaattctgaattcttataaacatcaacttgtactattatggattaatacttatttatacgtataaaataaaattttgattatggttactaagttctaccttacccgaacctgtaactttctctctagctctgtccttgatcagntcgagttaattactttcaatttgttttttttttaaatctaattatgttatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0113N10.1" temp_strand="-" temp_description="C06SLm0113N10.1  AC219227.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0113N10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11783" stop="10690"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11483" g_stop="10990" g_length="494"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="494" r_length="494" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0113N10.1" gen_strand="-" ref_id="SGN-E262182" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>494</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0113N10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E262182" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11483" e_stop="10990"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTAATTTACAGAAACGTGGACTGGTAAGCTTGGGGAAACGATTTGTGAACCAGATAACTTATTCAACTTCTCGAAATTCTGCCAACTCATCATCTACTGCGCTCTCTGGCAGGTATACTCTGAACCAGCAGTGGCTCAAGCATATTAGTGGCCTAAAACAAAAATAAAACAAGCTTTAAATTTGAATTGTTAATAACTTTAATATAGTTGATTTCTTTTAGTTTTTAATTAATAATATAACCATTCTTATTTTTCATGAGATATAATACTCCAAATATGTCATATTTCTTCTAATCTGAATTCTGAATTCTTATAAACATCAACTTGTACTATTATGGATTAATACTTATTTATACGTATAAAATAAAATTTTGATTATGGTTACTAAGTTCTACCTTACCCGAACCTGTAACTTTCTCTCTAGCTCTGTCCTTGATCAGTTCGAGTTAATTACTTTCAATTTGTTTTTTTTTTAAATCTAATTATGTTATGT</genome_strand>
        <mrna_strand>ACTAATTTACAGAAACGTGGACTGGTAAGCTTGGGGAAACGATTTGTGAACCAGATAACTTATTCAACTTCTCGAAATTCTGCCAACTCATCATCTACTGCGCTCTCTGGCAGGTATACTCTGAACCAGCAGTGGCTCAAGCATATTAGTGGCCTAAAACAAAAATAAAACAAGCTTTAAATTTGAATTGTTAATAACTTTAATATAGTTGATTTCTTTTAGTTTTTAATTAATAATATAACCATTCTTATTTTTCATGAGATATAATACTCCAAATATGTCATATTTCTTCTAATCTGAATTCTGAATTCTTATAAACATCAACTTGTACTATTATGGATTAATACTTATTTATACGTATAAAATAAAATTTTGATTATGGTTACTAAGTTCTACCTTACCCGAACCTGTAACTTTCTCTCTAGCTCTGTCCTTGATCAGNTCGAGTTAATTACTTTCAATTTGTTTTTTTTTTAAATCTAATTATGTTATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E718517" ref_strand="+" ref_description="SGN-E718517 [FC04DF04]">
      <seq>aatcggccgaattgatcattacattgagcatttcatctaattcttcttactcatttgctttattgtgttgaaaagtagtaattaagaactttaatcccttttttttcaaactagtaatccatatttgaatggccaccagtttacagaaccgtggattcgttagcttgaagaagggatttttgaactatattaatcaaagttttggctcggatcttgtgagggcagtgcatgcatcagtgtacgataagaatctggaggagtctgtgctggtgccagatgaagtgatcaaggcgaaatcggataagtactggactcctcatcctcatactggtgtgtttggaccagccactgatcatcatatcggtatcagggctgtgactgctagtgtagattctgtgttggaacagaaggccttcttccgcccactcgaggatcttgagaagccagcttatgtttaaatttctttcaatctgtagtgatttttttaaaaaatttgaatctgtagtaaagagtgcagaataagatgctatcaaatatttgtattataaataatatgaatcttttacttctatcaagttcgctctgtgttggggaagaaaagttgtaccatccaaatcctcccnnngaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0113N10.1" temp_strand="+" temp_description="C06SLm0113N10.1  AC219227.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0113N10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="20603" stop="21945"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20899" g_stop="21116" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="217" r_length="217" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21117" i_stop="21240" i_length="124">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21241" g_stop="21651" g_length="411"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="628" r_length="411" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="629" polyA_stop="674"/>
      <MATCH_line gen_id="C06SLm0113N10.1" gen_strand="+" ref_id="SGN-E718517" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>629</cumulative_length_of_scored_exons>
        <coverage percentage="0.933" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0113N10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E718517" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20899" e_stop="21116"/>
          <exon e_start="21241" e_stop="21651"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGAGACTCAAAATCATCATTACATTGAGCATTTCATCTAATTCTTCTTACTCATTTGCTTTATTGTGTTGAAAAGTAGTAATTAAGAACTTTAATCCCTTTTTTTTCAAACTAGTAATCCATATTTGAATGGCCACCAGTTTACAGAACCGTGGATTCGTTAGCTTGAAGAAGGGATTTTTGAACTATATTAATCAAAGTTTTGGCTCGGATCTTGTGTATGTATTAGAAAATCATTGAATAAGTAGTACTTCATTGATTTCGAACTCAGGAAATTGAATGGTTTGTGTCGTAAAGTTCAGATCCTTGATCCTTATTTATATGTGTGTGTTTTTTGTGCAGGAGGGCAGTGCATGCATCAGTGTACGATAAGAATCTGGAGGAGTCTGTGCTGGTGCCAGATGAAGTGATCAAGGCGAAATCGGATAAGTACTGGACTCCTCATCCTCATACTGGTGTGTTTGGACCAGCCACTGATCATCATATCGGTATCAGGGCTGTGACTGCTAGTGTAGATTCTGTGTTGGAACAGAAGGCCTTCTTCCGCCCACTCGAGGATCTTGAGAAGCCAGCTTATGTTTAAATTTCTTTCAATCTGTAGTGATTTTTTTAAAAAATTTGAATCTGTAGTAAAGAGTGCAGAATAAGATGCTATCAAATATTTGTATTATAAATAATATGAATCTTTTACTTCTATCAAGTTCGCTCTGTGTTGGGGAAGAAAAGTTGTACCATCCAAATCCTCCCAAAGAA</genome_strand>
        <mrna_strand>AATCGGC-CGAATTGATCATTACATTGAGCATTTCATCTAATTCTTCTTACTCATTTGCTTTATTGTGTTGAAAAGTAGTAATTAAGAACTTTAATCCCTTTTTTTTCAAACTAGTAATCCATATTTGAATGGCCACCAGTTTACAGAACCGTGGATTCGTTAGCTTGAAGAAGGGATTTTTGAACTATATTAATCAAAGTTTTGGCTCGGATCTTGT............................................................................................................................GAGGGCAGTGCATGCATCAGTGTACGATAAGAATCTGGAGGAGTCTGTGCTGGTGCCAGATGAAGTGATCAAGGCGAAATCGGATAAGTACTGGACTCCTCATCCTCATACTGGTGTGTTTGGACCAGCCACTGATCATCATATCGGTATCAGGGCTGTGACTGCTAGTGTAGATTCTGTGTTGGAACAGAAGGCCTTCTTCCGCCCACTCGAGGATCTTGAGAAGCCAGCTTATGTTTAAATTTCTTTCAATCTGTAGTGATTTTTTTAAAAAATTTGAATCTGTAGTAAAGAGTGCAGAATAAGATGCTATCAAATATTTGTATTATAAATAATATGAATCTTTTACTTCTATCAAGTTCGCTCTGTGTTGGGGAAGAAAAGTTGTACCATCCAAATCCTCCCNNNGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E722015" ref_strand="+" ref_description="SGN-E722015 [FC15DG11]">
      <seq>gggcgattggcggccaatcggccgaattgatcatcattacattgcccatttcatctaattcttcttactcatttgctttattgtgttgaaaagtagtaattaagaactttaatcccttttttttcaaactagtaatccatatttgaatggccaccagtttacagaaccgtggattcgttagcttgaagaagggatttttgaactatattaatcaaagttttggctcggatcttgtgtatgtattagaaaatcattgaataagtagtacttcattgatttcgaactcaggaaattgaatggtttgtgtcgtaaagttcaaatccttgatccttatttatatgtgtgtgttttttgtgcaggagggcagtgcatgcatcagtgtacgataagaatctggaggagtctgtgctggtgccagatgaagtgatcaaggcgaaatcggataagtactggactcctcatcctcatactggtgtgtttggaccagccactgatcatcatatcggtatcagggctgtgactgctagtgtagattctgtgttggaacagaaggccttcttccgcccactcgaggatcttgagaagccagcttatgtttaaatttctttcaatctgtagtgatttttttaaaaaatttgaatctgtagtaaagagtgcagaataagatgctatcaaatatttgtattataaataatatgaatcttttacttctatcaagttcgctctgtgttggggaagaaaagttgtaccatccaaatcctcccaaagaaattactctttcaatgaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0113N10.1" temp_strand="+" temp_description="C06SLm0113N10.1  AC219227.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0113N10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="20611" stop="21966"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20911" g_stop="21665" g_length="755"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="784" r_length="755" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="786" polyA_stop="800"/>
      <MATCH_line gen_id="C06SLm0113N10.1" gen_strand="+" ref_id="SGN-E722015" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>755</cumulative_length_of_scored_exons>
        <coverage percentage="0.944" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0113N10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E722015" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20911" e_stop="21665"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCATCATTACATTGAGCATTTCATCTAATTCTTCTTACTCATTTGCTTTATTGTGTTGAAAAGTAGTAATTAAGAACTTTAATCCCTTTTTTTTCAAACTAGTAATCCATATTTGAATGGCCACCAGTTTACAGAACCGTGGATTCGTTAGCTTGAAGAAGGGATTTTTGAACTATATTAATCAAAGTTTTGGCTCGGATCTTGTGTATGTATTAGAAAATCATTGAATAAGTAGTACTTCATTGATTTCGAACTCAGGAAATTGAATGGTTTGTGTCGTAAAGTTCAGATCCTTGATCCTTATTTATATGTGTGTGTTTTTTGTGCAGGAGGGCAGTGCATGCATCAGTGTACGATAAGAATCTGGAGGAGTCTGTGCTGGTGCCAGATGAAGTGATCAAGGCGAAATCGGATAAGTACTGGACTCCTCATCCTCATACTGGTGTGTTTGGACCAGCCACTGATCATCATATCGGTATCAGGGCTGTGACTGCTAGTGTAGATTCTGTGTTGGAACAGAAGGCCTTCTTCCGCCCACTCGAGGATCTTGAGAAGCCAGCTTATGTTTAAATTTCTTTCAATCTGTAGTGATTTTTTTAAAAAATTTGAATCTGTAGTAAAGAGTGCAGAATAAGATGCTATCAAATATTTGTATTATAAATAATATGAATCTTTTACTTCTATCAAGTTCGCTCTGTGTTGGGGAAGAAAAGTTGTACCATCCAAATCCTCCCAAAGAAATTACTCTTTCAAT</genome_strand>
        <mrna_strand>ATCATCATTACATTGCCCATTTCATCTAATTCTTCTTACTCATTTGCTTTATTGTGTTGAAAAGTAGTAATTAAGAACTTTAATCCCTTTTTTTTCAAACTAGTAATCCATATTTGAATGGCCACCAGTTTACAGAACCGTGGATTCGTTAGCTTGAAGAAGGGATTTTTGAACTATATTAATCAAAGTTTTGGCTCGGATCTTGTGTATGTATTAGAAAATCATTGAATAAGTAGTACTTCATTGATTTCGAACTCAGGAAATTGAATGGTTTGTGTCGTAAAGTTCAAATCCTTGATCCTTATTTATATGTGTGTGTTTTTTGTGCAGGAGGGCAGTGCATGCATCAGTGTACGATAAGAATCTGGAGGAGTCTGTGCTGGTGCCAGATGAAGTGATCAAGGCGAAATCGGATAAGTACTGGACTCCTCATCCTCATACTGGTGTGTTTGGACCAGCCACTGATCATCATATCGGTATCAGGGCTGTGACTGCTAGTGTAGATTCTGTGTTGGAACAGAAGGCCTTCTTCCGCCCACTCGAGGATCTTGAGAAGCCAGCTTATGTTTAAATTTCTTTCAATCTGTAGTGATTTTTTTAAAAAATTTGAATCTGTAGTAAAGAGTGCAGAATAAGATGCTATCAAATATTTGTATTATAAATAATATGAATCTTTTACTTCTATCAAGTTCGCTCTGTGTTGGGGAAGAAAAGTTGTACCATCCAAATCCTCCCAAAGAAATTACTCTTTCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E721927" ref_strand="+" ref_description="SGN-E721927 [FC15CG11]">
      <seq>aatcggccgaattgatcatcattacattgcgctttacatctaattcttcttactcatttgctttattgtgttgaaaagtagtaattaagaactttaatcccttttttttcaaactagtaatccatatttgaatggccaccagtttacagaaccgtggattcgttagcttgaagaagggatttttgaactatattaatcaaagttttggctcggatcttgtgtatgtattagaaaatcattgaataagtagtacttcattgatttcgaactcaggaaattgaatggtttgtgtcgtaaagttcaaatccttgatccttatttatatgtgtgtgttttttgtgcaggagggcagtgcatgcatcagtgtacgataagaatctggaggagtctgtgctggtgccagatgaagtgatcaaggcgaaatcggataagtactggactcctcatcctcatactggtgtgtttggaccagccactgatcatcatatcggtatcagggctgtgactgctagtgtagattctgtgttggaacagaaggccttcttccgcccactcgaggatcttgagaagccagcttatgtttaaatttctttcaatctgtagtgatttttttaaaaaatttgaatctgtagtaaagagtgcagaataagatgctatcaaatatttgtattataaataatatgaatcttttacttctatcaagttcgctctgtgttggggaagaaaagttgtaccatccaaatcctccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0113N10.1" temp_strand="+" temp_description="C06SLm0113N10.1  AC219227.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0113N10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="20611" stop="21945"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20911" g_stop="21645" g_length="735"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="749" r_length="735" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0113N10.1" gen_strand="+" ref_id="SGN-E721927" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>735</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0113N10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E721927" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20911" e_stop="21645"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCATCATTACATTGAGCATTTCATCTAATTCTTCTTACTCATTTGCTTTATTGTGTTGAAAAGTAGTAATTAAGAACTTTAATCCCTTTTTTTTCAAACTAGTAATCCATATTTGAATGGCCACCAGTTTACAGAACCGTGGATTCGTTAGCTTGAAGAAGGGATTTTTGAACTATATTAATCAAAGTTTTGGCTCGGATCTTGTGTATGTATTAGAAAATCATTGAATAAGTAGTACTTCATTGATTTCGAACTCAGGAAATTGAATGGTTTGTGTCGTAAAGTTCAGATCCTTGATCCTTATTTATATGTGTGTGTTTTTTGTGCAGGAGGGCAGTGCATGCATCAGTGTACGATAAGAATCTGGAGGAGTCTGTGCTGGTGCCAGATGAAGTGATCAAGGCGAAATCGGATAAGTACTGGACTCCTCATCCTCATACTGGTGTGTTTGGACCAGCCACTGATCATCATATCGGTATCAGGGCTGTGACTGCTAGTGTAGATTCTGTGTTGGAACAGAAGGCCTTCTTCCGCCCACTCGAGGATCTTGAGAAGCCAGCTTATGTTTAAATTTCTTTCAATCTGTAGTGATTTTTTTAAAAAATTTGAATCTGTAGTAAAGAGTGCAGAATAAGATGCTATCAAATATTTGTATTATAAATAATATGAATCTTTTACTTCTATCAAGTTCGCTCTGTGTTGGGGAAGAAAAGTTGTACCATCCAAATCCTCCC</genome_strand>
        <mrna_strand>ATCATCATTACATTGCGCTTTACATCTAATTCTTCTTACTCATTTGCTTTATTGTGTTGAAAAGTAGTAATTAAGAACTTTAATCCCTTTTTTTTCAAACTAGTAATCCATATTTGAATGGCCACCAGTTTACAGAACCGTGGATTCGTTAGCTTGAAGAAGGGATTTTTGAACTATATTAATCAAAGTTTTGGCTCGGATCTTGTGTATGTATTAGAAAATCATTGAATAAGTAGTACTTCATTGATTTCGAACTCAGGAAATTGAATGGTTTGTGTCGTAAAGTTCAAATCCTTGATCCTTATTTATATGTGTGTGTTTTTTGTGCAGGAGGGCAGTGCATGCATCAGTGTACGATAAGAATCTGGAGGAGTCTGTGCTGGTGCCAGATGAAGTGATCAAGGCGAAATCGGATAAGTACTGGACTCCTCATCCTCATACTGGTGTGTTTGGACCAGCCACTGATCATCATATCGGTATCAGGGCTGTGACTGCTAGTGTAGATTCTGTGTTGGAACAGAAGGCCTTCTTCCGCCCACTCGAGGATCTTGAGAAGCCAGCTTATGTTTAAATTTCTTTCAATCTGTAGTGATTTTTTTAAAAAATTTGAATCTGTAGTAAAGAGTGCAGAATAAGATGCTATCAAATATTTGTATTATAAATAATATGAATCTTTTACTTCTATCAAGTTCGCTCTGTGTTGGGGAAGAAAAGTTGTACCATCCAAATCCTCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E723482" ref_strand="+" ref_description="SGN-E723482 [FC20CE10]">
      <seq>gatcattacattgagcatttcatctaattcttcttactcatttgctttattgtgttgaaaagtagtaattaagaactttaatcccttttttttcaaactagtaatccatatttgaatggccaccagtttacagaaccgtggattcgttagcttgaagaagggatttttgaactatattaatcaaagttttggctcggatcttgtgagggcagtgcatgcatcagtgtacgataagaatctggaggagtctgtgctggtgccagatgaagtgatcaaggcgaaatcggataagtactggactcctcatcctcatactggtgtgtttggaccagccactgatcatcatatcggtatcagggctgtgactgctagtgtagattctgtgttggaacagaaggccttcttccgcccactcgaggatcttgagaagccagcttatgtttaaatttctttcaatctgtagtgatttttttaaaaaatttgaatctgtagtaaagagtgcagaataagatgctatcaaatatttgtattataaataatatgaatcttttacttctaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0113N10.1" temp_strand="+" temp_description="C06SLm0113N10.1  AC219227.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0113N10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="20614" stop="48389"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20913" g_stop="21116" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="204" r_length="204" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21117" i_stop="21240" i_length="124">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21241" g_stop="21598" g_length="358"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="562" r_length="358" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21599" i_stop="24537" i_length="2939">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.71"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24538" g_stop="24586" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="563" r_stop="611" r_length="49" r_score="0.714"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0113N10.1" gen_strand="+" ref_id="SGN-E723482" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>611</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0113N10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E723482" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20913" e_stop="21116"/>
          <exon e_start="21241" e_stop="21598"/>
          <exon e_start="24538" e_stop="24586"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCATTACATTGAGCATTTCATCTAATTCTTCTTACTCATTTGCTTTATTGTGTTGAAAAGTAGTAATTAAGAACTTTAATCCCTTTTTTTTCAAACTAGTAATCCATATTTGAATGGCCACCAGTTTACAGAACCGTGGATTCGTTAGCTTGAAGAAGGGATTTTTGAACTATATTAATCAAAGTTTTGGCTCGGATCTTGTGTATGTATTAGAAAATCATTGAATAAGTAGTACTTCATTGATTTCGAACTCAGGAAATTGAATGGTTTGTGTCGTAAAGTTCAGATCCTTGATCCTTATTTATATGTGTGTGTTTTTTGTGCAGGAGGGCAGTGCATGCATCAGTGTACGATAAGAATCTGGAGGAGTCTGTGCTGGTGCCAGATGAAGTGATCAAGGCGAAATCGGATAAGTACTGGACTCCTCATCCTCATACTGGTGTGTTTGGACCAGCCACTGATCATCATATCGGTATCAGGGCTGTGACTGCTAGTGTAGATTCTGTGTTGGAACAGAAGGCCTTCTTCCGCCCACTCGAGGATCTTGAGAAGCCAGCTTATGTTTAAATTTCTTTCAATCTGTAGTGATTTTTTTAAAAAATTTGAATCTGTAGTAAAGAGTGCAGAATAAGATGCTATCAAATATTTGTATTATAAATAATATGAATCTTTTACTTCTATCAAGTTCGCTCTGTGTTGGGGAAGAAAAGTTGTACCATCCAAATCCTCCCAAAGAAATTACTCTTTCAATGTTGCTGAAAATTTGATAAACAGAAAGAAACTCAATAGATTTAAGAACTTCAGAGAGATGTAATAATGGAAGAGGTGTCAAATGGGCGGATTGGGCTGAATTTGGGTGGATCAAATTGTTCCTGTAAAGTGCAGGTTGATAGAGTTGAAAAAGGAAAACACAATGGAACTGATGGAGGGACACATTTTTAATAATCTAGGCCAATTGTTTGGGAGTAAGAAATGTATATGCATCTTTATTCAGGGAGTAGAACCCCTCCAAAGGTTTCACAATGATACAATATTCTTATGATGAAGAACCTTTGCTTTTTATCTTTTTACACATGCTTTTTGTCACTATATGTGACCAAGAAAGATTATCGCAAACAAATAGCTCCTCCATTTACACGAACTTCACCAACGAACATATACAGAAAATGAACCAAAGTATCTCATTTTACACAATAAATACAGCAGTTGTCTGGTTCATGAGCATTTTGAGCTATATAGACTTTACAGAAATTCAATCACTCTCGCAATAAATATATGGTGTCCCTCACAATTCACCGAATACGGTTAAGGTGAGCAAATGGCTCAGTGTTTGCCTTTGGTGCAGGCTTTGCAACTTCAGGAGTACCAAATACATTCCAAAATCTAAGAGTTTCATCCCCAGCTGCAGATGCCACCGTGCAACCATCTGGACTCTGCAACAAATTTAACCAGAAAATTAGTTCCTTTCTTTCTTGTGTACTGCAAAAAATGCAACAAAATTACTTAAGAATCATGTACCTGTGCCATAAAAAGAACTCTGGATGTGTGACCAGTGAGCTCGGCTGTCTTTACCATGGAAGGGTATTTCCAAAGAGTGAGCTGATTCTTTGTGAAACCATGTGAACTTAGGAGCTCACGTTCGTTCTTGTTCCATAGCAGGGCACAAACCTGAGAGCCTGTATCGATAGAGTTCAAGCAAGCACCAGTATGGGTGTTCCAGAACTTAATGGACCTGTCACCTCCACCACCACCAGAGGCTAGTAAGTTACCCTGGAAAGGACACCAAGCAAGGGCCTTAACGGCAGCTGTATGATCTTCAAGCCTGTGAAGCCACTCTGTTGATGTGTTGGAAGAAGCCATTGACCTGTCCCATATATGGAGGAGATTATCATTTCCACCACTAGCTAATTGTTGACCAGAGGCTGACCATTTTAAACCACAAACTTCTTGGTTATGTCCTTGGTAGGTATCAACAATTGGCGATCTCACTCTCACATCATTGTTTCTGATCTGACCATCCATGCCCCCAGTTGTTAATAAGTGATTGTTCCAATCTAGAGCGCCAACTCGGGATCTGTGACCACCTCTCATAGTTCTCAGCTGCACCAATGTATAAAATCATATATTAGCATAAGAATCGCTCAAAATAAACAACATGAACAGAAAATTTCAAGAAACAAACCAGCCGATTTGCCGTTGTATCCCAGAGCTGAACATCGGAATTGTTCAAACCAAGAGCAATATGTCTACCATCAGGAGCCCATTTAACACTTGTAACAGGACCATGCTCTTCGTCAACAGTGACCAATTCTGAAGTGGCACCATCAGATGCATCCCACAGATATACAGTGCTGCCTAGAGCAATAGAAAGAACATTGCTGCTGCCCCAATCTAACAAATTCAAATAGTAGTCATCCACTAGATCTGGAGCATCTAATGTCCTTTCAGAGGTCTGCAAAAATATACCGATGAAACTGATAAGGATGGGATTCAGTAACAGTTACTATTTACAGCAATATGCCTAAATCTTGGACTTAAAAGTTAAGCACAATTGGCACAATAACTCATGAAATGTAATACTCACTTTAGACAACCTAAGTAAACTCACCTGAGGAATGTATCGACGCGGTTTAGCAGTCTTCGCCTGTTGGTGAACAGATGATGAGAAGTCGTTTGGAATACCCTCAACAGAAGTGGGTGGCTTGTTCTTGAACGCCAATATGCGGGACCTGTTCATGTTGAATGTTTCCGCAAGCTGCTTCCTGTATGCCTCTCTGGAGGGAGAATCAACAGCTGGATTTTCCTTACCTTTCCTTCCCTCTGTCAACATGTAATGTGCATAGTCCATATCCATTGCCGAACGATTAGGAATGAACCTATCCAACTGTAGTAACACAAATCAACAATCAATGTCTATGTCAAAGCCCTCCTCTTCTAAGAACTCACATAAAACAAGTCTAAGTAACCTCAATTAATTCTACAAAATCATAGCCAACCCCAGATGGCAAAGTGATGAAAAATCATCTCCCTTTTGACCTCTTAGTTCAAAATTCAATATAATACAAATTGTGGCAAAAAAAGGAAACAAGTGGTACATTTTAGAGAAAATAACCTGTGGTTAGTAGAACTGCAATGAAACTAACCAACTGTAATAACCCAAATCAGCAATCAATGTCTATGTTAATGCCCTCCTCTTTAGAACTCACATAAAACGACAACATACCCAGAGGTTAGAGTGCATGTCAACCTGACCCTACCTTCCGGAGGTAGAGAGATTGTTTCCGAAAGACACTCGGCTAAAGTACCACATATCAGAAACTCACATAAAACCTCAAATTTGTTCTATAAAAATTAAACCCAACCCCAGATGACACGTAGTATATGAAAACCCATCTCCCTTTTAGCCTATTTCTTAATTTCAAAATCCAAGTGTAACACAGATTATACCAATAAATTGAAACAATTAGTACTTTCTAGAGTCCATAATCGGAAGCAAGTAGAGAACCAACTTACATTATCCCGAGAATTTCTCTTTTGTAGATATTGTTCCTGAAGAGGGCAACGAGATTTGTTCTTACTTGCTGAGACAGAACTCAATGATCCTGCATCCATGGTGTTAGCACAAAAAAAAAAGATACAAAACCAGAGATCACAATAAAAAAAACGAAACAA</genome_strand>
        <mrna_strand>GATCATTACATTGAGCATTTCATCTAATTCTTCTTACTCATTTGCTTTATTGTGTTGAAAAGTAGTAATTAAGAACTTTAATCCCTTTTTTTTCAAACTAGTAATCCATATTTGAATGGCCACCAGTTTACAGAACCGTGGATTCGTTAGCTTGAAGAAGGGATTTTTGAACTATATTAATCAAAGTTTTGGCTCGGATCTTGT............................................................................................................................GAGGGCAGTGCATGCATCAGTGTACGATAAGAATCTGGAGGAGTCTGTGCTGGTGCCAGATGAAGTGATCAAGGCGAAATCGGATAAGTACTGGACTCCTCATCCTCATACTGGTGTGTTTGGACCAGCCACTGATCATCATATCGGTATCAGGGCTGTGACTGCTAGTGTAGATTCTGTGTTGGAACAGAAGGCCTTCTTCCGCCCACTCGAGGATCTTGAGAAGCCAGCTTATGTTTAAATTTCTTTCAATCTGTAGTGATTTTTTTAAAAAATTTGAATCTGTAGTAAAGAGTGCAGAATAAGATGCTATCAAATATTTGTATTATAAATAATATGAATCTTTTACTTCTAAAAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E722210" ref_strand="+" ref_description="SGN-E722210 [FC16CC11]">
      <seq>gcgattggcggccaatcggccgaattgatcattacattgagcatttcatctaattcttcttactcatttgctttattgtgttgaaaagtagtaattaagaactttaatcccttttttttcaaactagtaatccatatttgaatggccaccagtttacagaaccgtggattcgttagcttgaagaagggatttttgaactatattaatcaaagttttggctcggatcttgtgagggcagtgcatgcatcagtgtacgataagaatctggaggagtctgtgctggtgccagatgaagtgatcaaggcgaaatcggataagtactggactcctcatcctcatactggtgtgtttggaccagccactgatcatcatatcggtatcagggctgtgactgctagtgtagattctgtgttggaacagaaggccttcttccgcccactcgaggatcttgagaagccagcttatgtttaaatttctttcaatctgtagtgatttttttaaaaaatttgaatctgtagtaaagagtgcagaataagatgctatcaaatatttgtattataaataatatgaatcttttacttctntcnaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0113N10.1" temp_strand="+" temp_description="C06SLm0113N10.1  AC219227.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0113N10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="20603" stop="48389"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20914" g_stop="21116" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="230" r_length="203" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21117" i_stop="21240" i_length="124">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21241" g_stop="21598" g_length="358"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="588" r_length="358" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21599" i_stop="24537" i_length="2939">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.71"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24538" g_stop="24582" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="589" r_stop="633" r_length="45" r_score="0.711"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0113N10.1" gen_strand="+" ref_id="SGN-E722210" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>606</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0113N10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E722210" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20914" e_stop="21116"/>
          <exon e_start="21241" e_stop="21598"/>
          <exon e_start="24538" e_stop="24582"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCATTACATTGAGCATTTCATCTAATTCTTCTTACTCATTTGCTTTATTGTGTTGAAAAGTAGTAATTAAGAACTTTAATCCCTTTTTTTTCAAACTAGTAATCCATATTTGAATGGCCACCAGTTTACAGAACCGTGGATTCGTTAGCTTGAAGAAGGGATTTTTGAACTATATTAATCAAAGTTTTGGCTCGGATCTTGTGTATGTATTAGAAAATCATTGAATAAGTAGTACTTCATTGATTTCGAACTCAGGAAATTGAATGGTTTGTGTCGTAAAGTTCAGATCCTTGATCCTTATTTATATGTGTGTGTTTTTTGTGCAGGAGGGCAGTGCATGCATCAGTGTACGATAAGAATCTGGAGGAGTCTGTGCTGGTGCCAGATGAAGTGATCAAGGCGAAATCGGATAAGTACTGGACTCCTCATCCTCATACTGGTGTGTTTGGACCAGCCACTGATCATCATATCGGTATCAGGGCTGTGACTGCTAGTGTAGATTCTGTGTTGGAACAGAAGGCCTTCTTCCGCCCACTCGAGGATCTTGAGAAGCCAGCTTATGTTTAAATTTCTTTCAATCTGTAGTGATTTTTTTAAAAAATTTGAATCTGTAGTAAAGAGTGCAGAATAAGATGCTATCAAATATTTGTATTATAAATAATATGAATCTTTTACTTCTATCAAGTTCGCTCTGTGTTGGGGAAGAAAAGTTGTACCATCCAAATCCTCCCAAAGAAATTACTCTTTCAATGTTGCTGAAAATTTGATAAACAGAAAGAAACTCAATAGATTTAAGAACTTCAGAGAGATGTAATAATGGAAGAGGTGTCAAATGGGCGGATTGGGCTGAATTTGGGTGGATCAAATTGTTCCTGTAAAGTGCAGGTTGATAGAGTTGAAAAAGGAAAACACAATGGAACTGATGGAGGGACACATTTTTAATAATCTAGGCCAATTGTTTGGGAGTAAGAAATGTATATGCATCTTTATTCAGGGAGTAGAACCCCTCCAAAGGTTTCACAATGATACAATATTCTTATGATGAAGAACCTTTGCTTTTTATCTTTTTACACATGCTTTTTGTCACTATATGTGACCAAGAAAGATTATCGCAAACAAATAGCTCCTCCATTTACACGAACTTCACCAACGAACATATACAGAAAATGAACCAAAGTATCTCATTTTACACAATAAATACAGCAGTTGTCTGGTTCATGAGCATTTTGAGCTATATAGACTTTACAGAAATTCAATCACTCTCGCAATAAATATATGGTGTCCCTCACAATTCACCGAATACGGTTAAGGTGAGCAAATGGCTCAGTGTTTGCCTTTGGTGCAGGCTTTGCAACTTCAGGAGTACCAAATACATTCCAAAATCTAAGAGTTTCATCCCCAGCTGCAGATGCCACCGTGCAACCATCTGGACTCTGCAACAAATTTAACCAGAAAATTAGTTCCTTTCTTTCTTGTGTACTGCAAAAAATGCAACAAAATTACTTAAGAATCATGTACCTGTGCCATAAAAAGAACTCTGGATGTGTGACCAGTGAGCTCGGCTGTCTTTACCATGGAAGGGTATTTCCAAAGAGTGAGCTGATTCTTTGTGAAACCATGTGAACTTAGGAGCTCACGTTCGTTCTTGTTCCATAGCAGGGCACAAACCTGAGAGCCTGTATCGATAGAGTTCAAGCAAGCACCAGTATGGGTGTTCCAGAACTTAATGGACCTGTCACCTCCACCACCACCAGAGGCTAGTAAGTTACCCTGGAAAGGACACCAAGCAAGGGCCTTAACGGCAGCTGTATGATCTTCAAGCCTGTGAAGCCACTCTGTTGATGTGTTGGAAGAAGCCATTGACCTGTCCCATATATGGAGGAGATTATCATTTCCACCACTAGCTAATTGTTGACCAGAGGCTGACCATTTTAAACCACAAACTTCTTGGTTATGTCCTTGGTAGGTATCAACAATTGGCGATCTCACTCTCACATCATTGTTTCTGATCTGACCATCCATGCCCCCAGTTGTTAATAAGTGATTGTTCCAATCTAGAGCGCCAACTCGGGATCTGTGACCACCTCTCATAGTTCTCAGCTGCACCAATGTATAAAATCATATATTAGCATAAGAATCGCTCAAAATAAACAACATGAACAGAAAATTTCAAGAAACAAACCAGCCGATTTGCCGTTGTATCCCAGAGCTGAACATCGGAATTGTTCAAACCAAGAGCAATATGTCTACCATCAGGAGCCCATTTAACACTTGTAACAGGACCATGCTCTTCGTCAACAGTGACCAATTCTGAAGTGGCACCATCAGATGCATCCCACAGATATACAGTGCTGCCTAGAGCAATAGAAAGAACATTGCTGCTGCCCCAATCTAACAAATTCAAATAGTAGTCATCCACTAGATCTGGAGCATCTAATGTCCTTTCAGAGGTCTGCAAAAATATACCGATGAAACTGATAAGGATGGGATTCAGTAACAGTTACTATTTACAGCAATATGCCTAAATCTTGGACTTAAAAGTTAAGCACAATTGGCACAATAACTCATGAAATGTAATACTCACTTTAGACAACCTAAGTAAACTCACCTGAGGAATGTATCGACGCGGTTTAGCAGTCTTCGCCTGTTGGTGAACAGATGATGAGAAGTCGTTTGGAATACCCTCAACAGAAGTGGGTGGCTTGTTCTTGAACGCCAATATGCGGGACCTGTTCATGTTGAATGTTTCCGCAAGCTGCTTCCTGTATGCCTCTCTGGAGGGAGAATCAACAGCTGGATTTTCCTTACCTTTCCTTCCCTCTGTCAACATGTAATGTGCATAGTCCATATCCATTGCCGAACGATTAGGAATGAACCTATCCAACTGTAGTAACACAAATCAACAATCAATGTCTATGTCAAAGCCCTCCTCTTCTAAGAACTCACATAAAACAAGTCTAAGTAACCTCAATTAATTCTACAAAATCATAGCCAACCCCAGATGGCAAAGTGATGAAAAATCATCTCCCTTTTGACCTCTTAGTTCAAAATTCAATATAATACAAATTGTGGCAAAAAAAGGAAACAAGTGGTACATTTTAGAGAAAATAACCTGTGGTTAGTAGAACTGCAATGAAACTAACCAACTGTAATAACCCAAATCAGCAATCAATGTCTATGTTAATGCCCTCCTCTTTAGAACTCACATAAAACGACAACATACCCAGAGGTTAGAGTGCATGTCAACCTGACCCTACCTTCCGGAGGTAGAGAGATTGTTTCCGAAAGACACTCGGCTAAAGTACCACATATCAGAAACTCACATAAAACCTCAAATTTGTTCTATAAAAATTAAACCCAACCCCAGATGACACGTAGTATATGAAAACCCATCTCCCTTTTAGCCTATTTCTTAATTTCAAAATCCAAGTGTAACACAGATTATACCAATAAATTGAAACAATTAGTACTTTCTAGAGTCCATAATCGGAAGCAAGTAGAGAACCAACTTACATTATCCCGAGAATTTCTCTTTTGTAGATATTGTTCCTGAAGAGGGCAACGAGATTTGTTCTTACTTGCTGAGACAGAACTCAATGATCCTGCATCCATGGTGTTAGCACAAAAAAAAAAGATACAAAACCAGAGATCACAATAAAAAAAACGAA</genome_strand>
        <mrna_strand>ATCATTACATTGAGCATTTCATCTAATTCTTCTTACTCATTTGCTTTATTGTGTTGAAAAGTAGTAATTAAGAACTTTAATCCCTTTTTTTTCAAACTAGTAATCCATATTTGAATGGCCACCAGTTTACAGAACCGTGGATTCGTTAGCTTGAAGAAGGGATTTTTGAACTATATTAATCAAAGTTTTGGCTCGGATCTTGT............................................................................................................................GAGGGCAGTGCATGCATCAGTGTACGATAAGAATCTGGAGGAGTCTGTGCTGGTGCCAGATGAAGTGATCAAGGCGAAATCGGATAAGTACTGGACTCCTCATCCTCATACTGGTGTGTTTGGACCAGCCACTGATCATCATATCGGTATCAGGGCTGTGACTGCTAGTGTAGATTCTGTGTTGGAACAGAAGGCCTTCTTCCGCCCACTCGAGGATCTTGAGAAGCCAGCTTATGTTTAAATTTCTTTCAATCTGTAGTGATTTTTTTAAAAAATTTGAATCTGTAGTAAAGAGTGCAGAATAAGATGCTATCAAATATTTGTATTATAAATAATATGAATCTTTTACTTCTNTCNA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E717431" ref_strand="+" ref_description="SGN-E717431 [FC01AG12]">
      <seq>atcattacattgagcctttcatctaattcttcttactcatttgctttattgtgttgaaaagtagtaattaagaactttaatcccttttttttcaaactagtaatccatatttgaatggccaccagtttacagaaccgtggattcgttagcttgaagaagggatttttgaactatattaatcaaagttttggctcggatcttgtgagggcagtgcatgcatcagtgtacgataagaatctggaggagtctgtgctggtgccagatgaagtgatcaaggcgaaatcggataagtactggactcctcatcctcatactggtgtgtttggaccagccactgatcatcatatcggtatcagggctgtgactgctagtgtagattctgtgttggaacagaaggccttcttccgcccactcgaggatcttgagaagccagcttatgtttaaatttctttcaatctgtagtgatttttttaaaaaatttgaatctgtagtaaagagtgcagaataagatgctatcaaatatttgtattataaataatatgaatcttttacttcnnaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0113N10.1" temp_strand="+" temp_description="C06SLm0113N10.1  AC219227.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0113N10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="20614" stop="21892"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20914" g_stop="21116" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="203" r_length="203" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21117" i_stop="21240" i_length="124">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21241" g_stop="21593" g_length="353"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="556" r_length="353" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="558" polyA_stop="604"/>
      <MATCH_line gen_id="C06SLm0113N10.1" gen_strand="+" ref_id="SGN-E717431" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="0.921" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0113N10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E717431" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20914" e_stop="21116"/>
          <exon e_start="21241" e_stop="21593"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCATTACATTGAGCATTTCATCTAATTCTTCTTACTCATTTGCTTTATTGTGTTGAAAAGTAGTAATTAAGAACTTTAATCCCTTTTTTTTCAAACTAGTAATCCATATTTGAATGGCCACCAGTTTACAGAACCGTGGATTCGTTAGCTTGAAGAAGGGATTTTTGAACTATATTAATCAAAGTTTTGGCTCGGATCTTGTGTATGTATTAGAAAATCATTGAATAAGTAGTACTTCATTGATTTCGAACTCAGGAAATTGAATGGTTTGTGTCGTAAAGTTCAGATCCTTGATCCTTATTTATATGTGTGTGTTTTTTGTGCAGGAGGGCAGTGCATGCATCAGTGTACGATAAGAATCTGGAGGAGTCTGTGCTGGTGCCAGATGAAGTGATCAAGGCGAAATCGGATAAGTACTGGACTCCTCATCCTCATACTGGTGTGTTTGGACCAGCCACTGATCATCATATCGGTATCAGGGCTGTGACTGCTAGTGTAGATTCTGTGTTGGAACAGAAGGCCTTCTTCCGCCCACTCGAGGATCTTGAGAAGCCAGCTTATGTTTAAATTTCTTTCAATCTGTAGTGATTTTTTTAAAAAATTTGAATCTGTAGTAAAGAGTGCAGAATAAGATGCTATCAAATATTTGTATTATAAATAATATGAATCTTTTACTTCT</genome_strand>
        <mrna_strand>ATCATTACATTGAGCCTTTCATCTAATTCTTCTTACTCATTTGCTTTATTGTGTTGAAAAGTAGTAATTAAGAACTTTAATCCCTTTTTTTTCAAACTAGTAATCCATATTTGAATGGCCACCAGTTTACAGAACCGTGGATTCGTTAGCTTGAAGAAGGGATTTTTGAACTATATTAATCAAAGTTTTGGCTCGGATCTTGT............................................................................................................................GAGGGCAGTGCATGCATCAGTGTACGATAAGAATCTGGAGGAGTCTGTGCTGGTGCCAGATGAAGTGATCAAGGCGAAATCGGATAAGTACTGGACTCCTCATCCTCATACTGGTGTGTTTGGACCAGCCACTGATCATCATATCGGTATCAGGGCTGTGACTGCTAGTGTAGATTCTGTGTTGGAACAGAAGGCCTTCTTCCGCCCACTCGAGGATCTTGAGAAGCCAGCTTATGTTTAAATTTCTTTCAATCTGTAGTGATTTTTTTAAAAAATTTGAATCTGTAGTAAAGAGTGCAGAATAAGATGCTATCAAATATTTGTATTATAAATAATATGAATCTTTTACTTCN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E718561" ref_strand="+" ref_description="SGN-E718561 [FC05AB04]">
      <seq>gggcgattggcggccaatcggccgaattggagcatttcatctaattcttcttactcatttgctttattgtgttgaaaagtagtaattaagaactttaatcccttttttttcaaactagtaatccatatttgaatggccaccagtttacagaaccgtggattcgttagcttgaagaagggatttttgaactatattaatcaaagttttggctcggatcttgtgagggcagtgcatgcatcagtgtacgataagaatctggaggagtctgtgctggtgccagatgaagtgatcaaggcgaaatcggataagtactggactcctcatcctcatactggtgtgtttggaccagccactgatcatcatatcggtatcagggctgtgactgctagtgtagattctgtgttggaacagaaggccttcttccgcccactcgaggatcttgagaagccagcttatgtttaaatttctttcaatctgtagtgatttttttaaaaaatttgaatctgtagtaaagagtgcagaataagatgctatcaaatatttgtattataaataatatgaatcttttacttctaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0113N10.1" temp_strand="+" temp_description="C06SLm0113N10.1  AC219227.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0113N10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="20622" stop="48389"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20928" g_stop="21116" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="221" r_length="189" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21117" i_stop="21240" i_length="124">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21241" g_stop="21598" g_length="358"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="579" r_length="358" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21599" i_stop="24537" i_length="2939">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.73"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24538" g_stop="24578" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="580" r_stop="620" r_length="41" r_score="0.732"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0113N10.1" gen_strand="+" ref_id="SGN-E718561" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>588</cumulative_length_of_scored_exons>
        <coverage percentage="0.948" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0113N10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E718561" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20928" e_stop="21116"/>
          <exon e_start="21241" e_stop="21598"/>
          <exon e_start="24538" e_stop="24578"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTTCATCTAATTCTTCTTACTCATTTGCTTTATTGTGTTGAAAAGTAGTAATTAAGAACTTTAATCCCTTTTTTTTCAAACTAGTAATCCATATTTGAATGGCCACCAGTTTACAGAACCGTGGATTCGTTAGCTTGAAGAAGGGATTTTTGAACTATATTAATCAAAGTTTTGGCTCGGATCTTGTGTATGTATTAGAAAATCATTGAATAAGTAGTACTTCATTGATTTCGAACTCAGGAAATTGAATGGTTTGTGTCGTAAAGTTCAGATCCTTGATCCTTATTTATATGTGTGTGTTTTTTGTGCAGGAGGGCAGTGCATGCATCAGTGTACGATAAGAATCTGGAGGAGTCTGTGCTGGTGCCAGATGAAGTGATCAAGGCGAAATCGGATAAGTACTGGACTCCTCATCCTCATACTGGTGTGTTTGGACCAGCCACTGATCATCATATCGGTATCAGGGCTGTGACTGCTAGTGTAGATTCTGTGTTGGAACAGAAGGCCTTCTTCCGCCCACTCGAGGATCTTGAGAAGCCAGCTTATGTTTAAATTTCTTTCAATCTGTAGTGATTTTTTTAAAAAATTTGAATCTGTAGTAAAGAGTGCAGAATAAGATGCTATCAAATATTTGTATTATAAATAATATGAATCTTTTACTTCTATCAAGTTCGCTCTGTGTTGGGGAAGAAAAGTTGTACCATCCAAATCCTCCCAAAGAAATTACTCTTTCAATGTTGCTGAAAATTTGATAAACAGAAAGAAACTCAATAGATTTAAGAACTTCAGAGAGATGTAATAATGGAAGAGGTGTCAAATGGGCGGATTGGGCTGAATTTGGGTGGATCAAATTGTTCCTGTAAAGTGCAGGTTGATAGAGTTGAAAAAGGAAAACACAATGGAACTGATGGAGGGACACATTTTTAATAATCTAGGCCAATTGTTTGGGAGTAAGAAATGTATATGCATCTTTATTCAGGGAGTAGAACCCCTCCAAAGGTTTCACAATGATACAATATTCTTATGATGAAGAACCTTTGCTTTTTATCTTTTTACACATGCTTTTTGTCACTATATGTGACCAAGAAAGATTATCGCAAACAAATAGCTCCTCCATTTACACGAACTTCACCAACGAACATATACAGAAAATGAACCAAAGTATCTCATTTTACACAATAAATACAGCAGTTGTCTGGTTCATGAGCATTTTGAGCTATATAGACTTTACAGAAATTCAATCACTCTCGCAATAAATATATGGTGTCCCTCACAATTCACCGAATACGGTTAAGGTGAGCAAATGGCTCAGTGTTTGCCTTTGGTGCAGGCTTTGCAACTTCAGGAGTACCAAATACATTCCAAAATCTAAGAGTTTCATCCCCAGCTGCAGATGCCACCGTGCAACCATCTGGACTCTGCAACAAATTTAACCAGAAAATTAGTTCCTTTCTTTCTTGTGTACTGCAAAAAATGCAACAAAATTACTTAAGAATCATGTACCTGTGCCATAAAAAGAACTCTGGATGTGTGACCAGTGAGCTCGGCTGTCTTTACCATGGAAGGGTATTTCCAAAGAGTGAGCTGATTCTTTGTGAAACCATGTGAACTTAGGAGCTCACGTTCGTTCTTGTTCCATAGCAGGGCACAAACCTGAGAGCCTGTATCGATAGAGTTCAAGCAAGCACCAGTATGGGTGTTCCAGAACTTAATGGACCTGTCACCTCCACCACCACCAGAGGCTAGTAAGTTACCCTGGAAAGGACACCAAGCAAGGGCCTTAACGGCAGCTGTATGATCTTCAAGCCTGTGAAGCCACTCTGTTGATGTGTTGGAAGAAGCCATTGACCTGTCCCATATATGGAGGAGATTATCATTTCCACCACTAGCTAATTGTTGACCAGAGGCTGACCATTTTAAACCACAAACTTCTTGGTTATGTCCTTGGTAGGTATCAACAATTGGCGATCTCACTCTCACATCATTGTTTCTGATCTGACCATCCATGCCCCCAGTTGTTAATAAGTGATTGTTCCAATCTAGAGCGCCAACTCGGGATCTGTGACCACCTCTCATAGTTCTCAGCTGCACCAATGTATAAAATCATATATTAGCATAAGAATCGCTCAAAATAAACAACATGAACAGAAAATTTCAAGAAACAAACCAGCCGATTTGCCGTTGTATCCCAGAGCTGAACATCGGAATTGTTCAAACCAAGAGCAATATGTCTACCATCAGGAGCCCATTTAACACTTGTAACAGGACCATGCTCTTCGTCAACAGTGACCAATTCTGAAGTGGCACCATCAGATGCATCCCACAGATATACAGTGCTGCCTAGAGCAATAGAAAGAACATTGCTGCTGCCCCAATCTAACAAATTCAAATAGTAGTCATCCACTAGATCTGGAGCATCTAATGTCCTTTCAGAGGTCTGCAAAAATATACCGATGAAACTGATAAGGATGGGATTCAGTAACAGTTACTATTTACAGCAATATGCCTAAATCTTGGACTTAAAAGTTAAGCACAATTGGCACAATAACTCATGAAATGTAATACTCACTTTAGACAACCTAAGTAAACTCACCTGAGGAATGTATCGACGCGGTTTAGCAGTCTTCGCCTGTTGGTGAACAGATGATGAGAAGTCGTTTGGAATACCCTCAACAGAAGTGGGTGGCTTGTTCTTGAACGCCAATATGCGGGACCTGTTCATGTTGAATGTTTCCGCAAGCTGCTTCCTGTATGCCTCTCTGGAGGGAGAATCAACAGCTGGATTTTCCTTACCTTTCCTTCCCTCTGTCAACATGTAATGTGCATAGTCCATATCCATTGCCGAACGATTAGGAATGAACCTATCCAACTGTAGTAACACAAATCAACAATCAATGTCTATGTCAAAGCCCTCCTCTTCTAAGAACTCACATAAAACAAGTCTAAGTAACCTCAATTAATTCTACAAAATCATAGCCAACCCCAGATGGCAAAGTGATGAAAAATCATCTCCCTTTTGACCTCTTAGTTCAAAATTCAATATAATACAAATTGTGGCAAAAAAAGGAAACAAGTGGTACATTTTAGAGAAAATAACCTGTGGTTAGTAGAACTGCAATGAAACTAACCAACTGTAATAACCCAAATCAGCAATCAATGTCTATGTTAATGCCCTCCTCTTTAGAACTCACATAAAACGACAACATACCCAGAGGTTAGAGTGCATGTCAACCTGACCCTACCTTCCGGAGGTAGAGAGATTGTTTCCGAAAGACACTCGGCTAAAGTACCACATATCAGAAACTCACATAAAACCTCAAATTTGTTCTATAAAAATTAAACCCAACCCCAGATGACACGTAGTATATGAAAACCCATCTCCCTTTTAGCCTATTTCTTAATTTCAAAATCCAAGTGTAACACAGATTATACCAATAAATTGAAACAATTAGTACTTTCTAGAGTCCATAATCGGAAGCAAGTAGAGAACCAACTTACATTATCCCGAGAATTTCTCTTTTGTAGATATTGTTCCTGAAGAGGGCAACGAGATTTGTTCTTACTTGCTGAGACAGAACTCAATGATCCTGCATCCATGGTGTTAGCACAAAAAAAAAAGATACAAAACCAGAGATCACAATAAAAAAAA</genome_strand>
        <mrna_strand>CATTTCATCTAATTCTTCTTACTCATTTGCTTTATTGTGTTGAAAAGTAGTAATTAAGAACTTTAATCCCTTTTTTTTCAAACTAGTAATCCATATTTGAATGGCCACCAGTTTACAGAACCGTGGATTCGTTAGCTTGAAGAAGGGATTTTTGAACTATATTAATCAAAGTTTTGGCTCGGATCTTGT............................................................................................................................GAGGGCAGTGCATGCATCAGTGTACGATAAGAATCTGGAGGAGTCTGTGCTGGTGCCAGATGAAGTGATCAAGGCGAAATCGGATAAGTACTGGACTCCTCATCCTCATACTGGTGTGTTTGGACCAGCCACTGATCATCATATCGGTATCAGGGCTGTGACTGCTAGTGTAGATTCTGTGTTGGAACAGAAGGCCTTCTTCCGCCCACTCGAGGATCTTGAGAAGCCAGCTTATGTTTAAATTTCTTTCAATCTGTAGTGATTTTTTTAAAAAATTTGAATCTGTAGTAAAGAGTGCAGAATAAGATGCTATCAAATATTTGTATTATAAATAATATGAATCTTTTACTTCTAAAAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E715980" ref_strand="+" ref_description="SGN-E715980 [FB15DB12]">
      <seq>atttcatctaattcttcttactcatttgctttattgtgttgaaaagtagtaattaagaactttaatcccttttttttcaaactagtaatccatatttgaatggccaccagtttacagaaccgtggattcgttagcttgaagaagggatttttgaactatattaatcaaagttttggctcggatcttgtgagggcagtgcatgcatcagtgtacgataagaatctggaggagtctgtgctggtgccagatgaagtgatcaaggcgaaatcggataagtactggactcctcatcctcatactggtgtgtttggaccagccactgatcatcatatcggtatcagggctgtgactgctagtgtagattctgtgttggaacagaaggccttcttccgcccactcgaggatcttgagaagccagcttatgtttaaatttctttcaatctgtagtgatttttttaaaaaatttgaatctgtagtaaagagtgcagaataagatgctatcaaatatttgtattataaataatatgaatcttttacttctaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0113N10.1" temp_strand="+" temp_description="C06SLm0113N10.1  AC219227.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0113N10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="20629" stop="48389"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20929" g_stop="21116" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="188" r_length="188" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21117" i_stop="21240" i_length="124">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21241" g_stop="21598" g_length="358"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="546" r_length="358" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21599" i_stop="21688" i_length="90">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.559" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21689" g_stop="21702" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="547" r_stop="560" r_length="14" r_score="0.643"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0113N10.1" gen_strand="+" ref_id="SGN-E715980" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0113N10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E715980" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20929" e_stop="21116"/>
          <exon e_start="21241" e_stop="21598"/>
          <exon e_start="21689" e_stop="21702"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCATCTAATTCTTCTTACTCATTTGCTTTATTGTGTTGAAAAGTAGTAATTAAGAACTTTAATCCCTTTTTTTTCAAACTAGTAATCCATATTTGAATGGCCACCAGTTTACAGAACCGTGGATTCGTTAGCTTGAAGAAGGGATTTTTGAACTATATTAATCAAAGTTTTGGCTCGGATCTTGTGTATGTATTAGAAAATCATTGAATAAGTAGTACTTCATTGATTTCGAACTCAGGAAATTGAATGGTTTGTGTCGTAAAGTTCAGATCCTTGATCCTTATTTATATGTGTGTGTTTTTTGTGCAGGAGGGCAGTGCATGCATCAGTGTACGATAAGAATCTGGAGGAGTCTGTGCTGGTGCCAGATGAAGTGATCAAGGCGAAATCGGATAAGTACTGGACTCCTCATCCTCATACTGGTGTGTTTGGACCAGCCACTGATCATCATATCGGTATCAGGGCTGTGACTGCTAGTGTAGATTCTGTGTTGGAACAGAAGGCCTTCTTCCGCCCACTCGAGGATCTTGAGAAGCCAGCTTATGTTTAAATTTCTTTCAATCTGTAGTGATTTTTTTAAAAAATTTGAATCTGTAGTAAAGAGTGCAGAATAAGATGCTATCAAATATTTGTATTATAAATAATATGAATCTTTTACTTCTATCAAGTTCGCTCTGTGTTGGGGAAGAAAAGTTGTACCATCCAAATCCTCCCAAAGAAATTACTCTTTCAATGTTGCTGAAAATTTGATAAACAGAAAGAAACTCAATA</genome_strand>
        <mrna_strand>ATTTCATCTAATTCTTCTTACTCATTTGCTTTATTGTGTTGAAAAGTAGTAATTAAGAACTTTAATCCCTTTTTTTTCAAACTAGTAATCCATATTTGAATGGCCACCAGTTTACAGAACCGTGGATTCGTTAGCTTGAAGAAGGGATTTTTGAACTATATTAATCAAAGTTTTGGCTCGGATCTTGT............................................................................................................................GAGGGCAGTGCATGCATCAGTGTACGATAAGAATCTGGAGGAGTCTGTGCTGGTGCCAGATGAAGTGATCAAGGCGAAATCGGATAAGTACTGGACTCCTCATCCTCATACTGGTGTGTTTGGACCAGCCACTGATCATCATATCGGTATCAGGGCTGTGACTGCTAGTGTAGATTCTGTGTTGGAACAGAAGGCCTTCTTCCGCCCACTCGAGGATCTTGAGAAGCCAGCTTATGTTTAAATTTCTTTCAATCTGTAGTGATTTTTTTAAAAAATTTGAATCTGTAGTAAAGAGTGCAGAATAAGATGCTATCAAATATTTGTATTATAAATAATATGAATCTTTTACTTCTAAAAA..........................................................................................AAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E712130" ref_strand="+" ref_description="SGN-E712130 [FB03DH12]">
      <seq>atttcatctaattcttcttactcatttgctttattgtgttgaaaagtagtaattaagaactttaatcccttttttttcaaactagtaatccatatttgaatggccaccagtttacagaaccgtggattcgttagcttgaagaagggatttttgaactatattaatcaaagttttggctcggatcttgtgagggcagtgcatgcatcagtgtacgataagaatctggaggagtctgtgctggtgccagatgaagtgatcaaggcgaaatcggataagtactggactcctcatcctcatactggtgtgtttggaccagccactgatcatcatatcggtatcagggctgtgactgctagtgtagattctgtgttggaacagaaggccttcttccgcccactcgaggatcttgagaagccagcttatgtttaaatttctttcaatctgtagtgatttttttaaaaaatttgaatctgtagtaaagagtgcagaataagatgctatcaaatatttgtattataaataatatgaatcttttacttctatcaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0113N10.1" temp_strand="+" temp_description="C06SLm0113N10.1  AC219227.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0113N10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="20629" stop="21898"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20929" g_stop="21116" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="188" r_length="188" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21117" i_stop="21240" i_length="124">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21241" g_stop="21598" g_length="358"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="546" r_length="358" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21599" i_stop="21688" i_length="90">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.559" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21689" g_stop="21700" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="547" r_stop="558" r_length="12" r_score="0.667"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0113N10.1" gen_strand="+" ref_id="SGN-E712130" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0113N10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E712130" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20929" e_stop="21116"/>
          <exon e_start="21241" e_stop="21598"/>
          <exon e_start="21689" e_stop="21700"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCATCTAATTCTTCTTACTCATTTGCTTTATTGTGTTGAAAAGTAGTAATTAAGAACTTTAATCCCTTTTTTTTCAAACTAGTAATCCATATTTGAATGGCCACCAGTTTACAGAACCGTGGATTCGTTAGCTTGAAGAAGGGATTTTTGAACTATATTAATCAAAGTTTTGGCTCGGATCTTGTGTATGTATTAGAAAATCATTGAATAAGTAGTACTTCATTGATTTCGAACTCAGGAAATTGAATGGTTTGTGTCGTAAAGTTCAGATCCTTGATCCTTATTTATATGTGTGTGTTTTTTGTGCAGGAGGGCAGTGCATGCATCAGTGTACGATAAGAATCTGGAGGAGTCTGTGCTGGTGCCAGATGAAGTGATCAAGGCGAAATCGGATAAGTACTGGACTCCTCATCCTCATACTGGTGTGTTTGGACCAGCCACTGATCATCATATCGGTATCAGGGCTGTGACTGCTAGTGTAGATTCTGTGTTGGAACAGAAGGCCTTCTTCCGCCCACTCGAGGATCTTGAGAAGCCAGCTTATGTTTAAATTTCTTTCAATCTGTAGTGATTTTTTTAAAAAATTTGAATCTGTAGTAAAGAGTGCAGAATAAGATGCTATCAAATATTTGTATTATAAATAATATGAATCTTTTACTTCTATCAAGTTCGCTCTGTGTTGGGGAAGAAAAGTTGTACCATCCAAATCCTCCCAAAGAAATTACTCTTTCAATGTTGCTGAAAATTTGATAAACAGAAAGAAACTCAA</genome_strand>
        <mrna_strand>ATTTCATCTAATTCTTCTTACTCATTTGCTTTATTGTGTTGAAAAGTAGTAATTAAGAACTTTAATCCCTTTTTTTTCAAACTAGTAATCCATATTTGAATGGCCACCAGTTTACAGAACCGTGGATTCGTTAGCTTGAAGAAGGGATTTTTGAACTATATTAATCAAAGTTTTGGCTCGGATCTTGT............................................................................................................................GAGGGCAGTGCATGCATCAGTGTACGATAAGAATCTGGAGGAGTCTGTGCTGGTGCCAGATGAAGTGATCAAGGCGAAATCGGATAAGTACTGGACTCCTCATCCTCATACTGGTGTGTTTGGACCAGCCACTGATCATCATATCGGTATCAGGGCTGTGACTGCTAGTGTAGATTCTGTGTTGGAACAGAAGGCCTTCTTCCGCCCACTCGAGGATCTTGAGAAGCCAGCTTATGTTTAAATTTCTTTCAATCTGTAGTGATTTTTTTAAAAAATTTGAATCTGTAGTAAAGAGTGCAGAATAAGATGCTATCAAATATTTGTATTATAAATAATATGAATCTTTTACTTCTATCAA..........................................................................................AAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E714482" ref_strand="+" ref_description="SGN-E714482 [FB11CC08]">
      <seq>ctaattcttcttactcatttgctttattgtgttgaaaagtagtaattaagaactttaatcccttttttttcaaactagtaatccatatttgaatggccaccagtttacagaaccgtggattcgttagcttgaagaagggatttttgaactatattaatcaaagttttggctcggatcttgtgagggcagtgcatgcatcagtgtacgataagaatctggaggagtctgtgctggtgccagatgaagtgatcaaggcgaaatcggataagtactggactcctcatcctcatactggtgtgtttggaccagccactgatcatcatatcggtatcagggctgtgactgctagtgtagattctgtgttggaacagaaggccttcttccgcccactcgaggatcttgagaagccagcttatgtttaaatttctttcaatctgtagtgatttttttaaaaaatttgaatctgtagtaaagagtgcagaataagatgctatcaaatatttgtattataaataatatgaatcttttacttcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0113N10.1" temp_strand="+" temp_description="C06SLm0113N10.1  AC219227.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0113N10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="20636" stop="21898"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20936" g_stop="21116" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="181" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21117" i_stop="21240" i_length="124">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21241" g_stop="21603" g_length="363"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="544" r_length="363" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0113N10.1" gen_strand="+" ref_id="SGN-E714482" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>544</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0113N10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E714482" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20936" e_stop="21116"/>
          <exon e_start="21241" e_stop="21603"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAATTCTTCTTACTCATTTGCTTTATTGTGTTGAAAAGTAGTAATTAAGAACTTTAATCCCTTTTTTTTCAAACTAGTAATCCATATTTGAATGGCCACCAGTTTACAGAACCGTGGATTCGTTAGCTTGAAGAAGGGATTTTTGAACTATATTAATCAAAGTTTTGGCTCGGATCTTGTGTATGTATTAGAAAATCATTGAATAAGTAGTACTTCATTGATTTCGAACTCAGGAAATTGAATGGTTTGTGTCGTAAAGTTCAGATCCTTGATCCTTATTTATATGTGTGTGTTTTTTGTGCAGGAGGGCAGTGCATGCATCAGTGTACGATAAGAATCTGGAGGAGTCTGTGCTGGTGCCAGATGAAGTGATCAAGGCGAAATCGGATAAGTACTGGACTCCTCATCCTCATACTGGTGTGTTTGGACCAGCCACTGATCATCATATCGGTATCAGGGCTGTGACTGCTAGTGTAGATTCTGTGTTGGAACAGAAGGCCTTCTTCCGCCCACTCGAGGATCTTGAGAAGCCAGCTTATGTTTAAATTTCTTTCAATCTGTAGTGATTTTTTTAAAAAATTTGAATCTGTAGTAAAGAGTGCAGAATAAGATGCTATCAAATATTTGTATTATAAATAATATGAATCTTTTACTTCTATCAAGTTCG</genome_strand>
        <mrna_strand>CTAATTCTTCTTACTCATTTGCTTTATTGTGTTGAAAAGTAGTAATTAAGAACTTTAATCCCTTTTTTTTCAAACTAGTAATCCATATTTGAATGGCCACCAGTTTACAGAACCGTGGATTCGTTAGCTTGAAGAAGGGATTTTTGAACTATATTAATCAAAGTTTTGGCTCGGATCTTGT............................................................................................................................GAGGGCAGTGCATGCATCAGTGTACGATAAGAATCTGGAGGAGTCTGTGCTGGTGCCAGATGAAGTGATCAAGGCGAAATCGGATAAGTACTGGACTCCTCATCCTCATACTGGTGTGTTTGGACCAGCCACTGATCATCATATCGGTATCAGGGCTGTGACTGCTAGTGTAGATTCTGTGTTGGAACAGAAGGCCTTCTTCCGCCCACTCGAGGATCTTGAGAAGCCAGCTTATGTTTAAATTTCTTTCAATCTGTAGTGATTTTTTTAAAAAATTTGAATCTGTAGTAAAGAGTGCAGAATAAGATGCTATCAAATATTTGTATTATAAATAATATGAATCTTTTACTTCAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E346928" ref_strand="+" ref_description="SGN-E346928 [cTOF-32-L21]">
      <seq>ttcttactcatttgctttattgtgttgaaaagtagtaattaagaactttaatcccttttttttcaaactagtaatccatatttgaatggccaccagtttacagaaccgtggattcgttagcttgaagaagggatttttgaactatattaatcaaagttttggctcggatcttgtgagggcagtgcatgcatcagtgtacgataagaatctggaggagtctgtgctggtgccagatgaagtgatcaaggcgaaatcggataagtactggactcctcatcctcatactggtgtgtttggaccagccactgatcatcatatcggtatcagggctgngactgctagtgtagattctgtgttggaacagaaggccttcttccgcccactcgaggatcttgagaagccagcttatgtttaaatttctttcaatctgtagtgatttttttaaaaaatttgaatctgtagtaaagagtgcagaataagatgctatcaaatatttgtattataaataatatgaatcttttacttctaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0113N10.1" temp_strand="+" temp_description="C06SLm0113N10.1  AC219227.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0113N10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="20643" stop="21898"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20943" g_stop="21116" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="174" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21117" i_stop="21240" i_length="124">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21241" g_stop="21603" g_length="363"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="537" r_length="363" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0113N10.1" gen_strand="+" ref_id="SGN-E346928" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>537</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0113N10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E346928" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20943" e_stop="21116"/>
          <exon e_start="21241" e_stop="21603"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTACTCATTTGCTTTATTGTGTTGAAAAGTAGTAATTAAGAACTTTAATCCCTTTTTTTTCAAACTAGTAATCCATATTTGAATGGCCACCAGTTTACAGAACCGTGGATTCGTTAGCTTGAAGAAGGGATTTTTGAACTATATTAATCAAAGTTTTGGCTCGGATCTTGTGTATGTATTAGAAAATCATTGAATAAGTAGTACTTCATTGATTTCGAACTCAGGAAATTGAATGGTTTGTGTCGTAAAGTTCAGATCCTTGATCCTTATTTATATGTGTGTGTTTTTTGTGCAGGAGGGCAGTGCATGCATCAGTGTACGATAAGAATCTGGAGGAGTCTGTGCTGGTGCCAGATGAAGTGATCAAGGCGAAATCGGATAAGTACTGGACTCCTCATCCTCATACTGGTGTGTTTGGACCAGCCACTGATCATCATATCGGTATCAGGGCTGTGACTGCTAGTGTAGATTCTGTGTTGGAACAGAAGGCCTTCTTCCGCCCACTCGAGGATCTTGAGAAGCCAGCTTATGTTTAAATTTCTTTCAATCTGTAGTGATTTTTTTAAAAAATTTGAATCTGTAGTAAAGAGTGCAGAATAAGATGCTATCAAATATTTGTATTATAAATAATATGAATCTTTTACTTCTATCAAGTTCG</genome_strand>
        <mrna_strand>TTCTTACTCATTTGCTTTATTGTGTTGAAAAGTAGTAATTAAGAACTTTAATCCCTTTTTTTTCAAACTAGTAATCCATATTTGAATGGCCACCAGTTTACAGAACCGTGGATTCGTTAGCTTGAAGAAGGGATTTTTGAACTATATTAATCAAAGTTTTGGCTCGGATCTTGT............................................................................................................................GAGGGCAGTGCATGCATCAGTGTACGATAAGAATCTGGAGGAGTCTGTGCTGGTGCCAGATGAAGTGATCAAGGCGAAATCGGATAAGTACTGGACTCCTCATCCTCATACTGGTGTGTTTGGACCAGCCACTGATCATCATATCGGTATCAGGGCTGNGACTGCTAGTGTAGATTCTGTGTTGGAACAGAAGGCCTTCTTCCGCCCACTCGAGGATCTTGAGAAGCCAGCTTATGTTTAAATTTCTTTCAATCTGTAGTGATTTTTTTAAAAAATTTGAATCTGTAGTAAAGAGTGCAGAATAAGATGCTATCAAATATTTGTATTATAAATAATATGAATCTTTTACTTCTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E712179" ref_strand="+" ref_description="SGN-E712179 [FB04AE06]">
      <seq>cttactcatttgctttattgtgttgaaaagtagtaattaagaactttaatcccttttttttcaaactagtaatccatatttgaatggccaccagtttacagaaccgtggattcgttagcttgaagaagggatttttgaactatattaatcaaagttttggctcggatcttgtgagggcagtgcatgcatcagtgtacgataagaatctggaggagtctgtgctggtgccagatgaagtgatcaaggcgaaatcggataagtactggactcctcatcctcatactggtgtgtttggaccagccactgatcatcatatcggtatcagggctgtgactgctagtgtagattctgtgttggaacagaaggccttcttccgcccactcgaggatcttgagaagccagcttatgtttaaatttctttcaatctgtagtgatttttttaaaaaatttgaatctgtagtaaagagtgcagaataagatgctatcaaatatttgtattataaataatatgaatcttttacttctaaaaaaaaaaaaaaaaaaaaaaaaaaaaaacccccgggggggggccgggaccccattccccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0113N10.1" temp_strand="+" temp_description="C06SLm0113N10.1  AC219227.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0113N10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="20645" stop="48389"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20945" g_stop="21116" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="172" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21117" i_stop="21240" i_length="124">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21241" g_stop="21598" g_length="358"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="529" r_length="357" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21599" i_stop="21799" i_length="201">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.872" a_score="0.46"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21800" g_stop="21857" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="530" r_stop="587" r_length="58" r_score="0.431"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0113N10.1" gen_strand="+" ref_id="SGN-E712179" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>588</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0113N10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E712179" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20945" e_stop="21116"/>
          <exon e_start="21241" e_stop="21598"/>
          <exon e_start="21800" e_stop="21857"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTACTCATTTGCTTTATTGTGTTGAAAAGTAGTAATTAAGAACTTTAATCCCTTTTTTTTCAAACTAGTAATCCATATTTGAATGGCCACCAGTTTACAGAACCGTGGATTCGTTAGCTTGAAGAAGGGATTTTTGAACTATATTAATCAAAGTTTTGGCTCGGATCTTGTGTATGTATTAGAAAATCATTGAATAAGTAGTACTTCATTGATTTCGAACTCAGGAAATTGAATGGTTTGTGTCGTAAAGTTCAGATCCTTGATCCTTATTTATATGTGTGTGTTTTTTGTGCAGGAGGGCAGTGCATGCATCAGTGTACGATAAGAATCTGGAGGAGTCTGTGCTGGTGCCAGATGAAGTGATCAAGGCGAAATCGGATAAGTACTGGACTCCTCATCCTCATACTGGTGTGTTTGGACCAGCCACTGATCATCATATCGGTATCAGGGCTGTGACTGCTAGTGTAGATTCTGTGTTGGAACAGAAGGCCTTCTTCCGCCCACTCGAGGATCTTGAGAAGCCAGCTTATGTTTAAATTTCTTTCAATCTGTAGTGATTTTTTTAAAAAATTTGAATCTGTAGTAAAGAGTGCAGAATAAGATGCTATCAAATATTTGTATTATAAATAATATGAATCTTTTACTTCTATCAAGTTCGCTCTGTGTTGGGGAAGAAAAGTTGTACCATCCAAATCCTCCCAAAGAAATTACTCTTTCAATGTTGCTGAAAATTTGATAAACAGAAAGAAACTCAATAGATTTAAGAACTTCAGAGAGATGTAATAATGGAAGAGGTGTCAAATGGGCGGATTGGGCTGAATTTGGGTGGATCAAATTGTTCCTGTAAAGTGCAGGTTGATAGAGTTGAAAAAGGAAAACACAATGGAACTGATGGAGGGACACATTTTTAAT</genome_strand>
        <mrna_strand>CTTACTCATTTGCTTTATTGTGTTGAAAAGTAGTAATTAAGAACTTTAATCCCTTTTTTTTCAAACTAGTAATCCATATTTGAATGGCCACCAGTTTACAGAACCGTGGATTCGTTAGCTTGAAGAAGGGATTTTTGAACTATATTAATCAAAGTTTTGGCTCGGATCTTGT............................................................................................................................GAGGGCAGTGCATGCATCAGTGTACGATAAGAATCTGGAGGAGTCTGTGCTGGTGCCAGATGAAGTGATCAAGGCGAAATCGGATAAGTACTGGACTCCTCATCCTCATACTGGTGTGTTTGGACCAGCCACTGATCATCATATCGGTATCAGGGCTGTGACTGCTAGTGTAGATTCTGTGTTGGAACAGAAGGCCTTCTTCCGCCCACTCGAGGATCTTGAGAAGCCAGCTTATGTTTAAATTTCTTTCAATCTGTAGTGATTTTTTTAAAAAATTTGAATCTGTAGTAAAGAGTGCAGAATAAGATGCTATCAAATATTTGTATTATAAATAATATGAATCTTTTACTTCTA-AAA.........................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAACCCCCGGGGGGGGGCCGGGACCCCATTCCCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E721562" ref_strand="+" ref_description="SGN-E721562 [FC14BC03]">
      <seq>ttactcatttgctttattgtgttgaaaagtagtaattaagaactttaatcccttttttttcaaactagtaatccatatttgaatggccaccagtttacagaaccgtggattcgttagcttgaaaaagggatttttgaactatattaatcaaagttttggctcggatcttgtgagggcagtgcatgcatcagtgtacgataagaatctggaggagtctgtgctggtgccagatgaagtgatcaaggcgaaatcggataagtactggactcctcatcctcatactggtgtgtttggaccagccactgatcatcatatcggtatcagggctgtgactgctagtgtaaattctgtgttggaacagaaggccttcttccgcccactcgaggatcttgagaagccagcttatgtttaaatttctttcaatctgtagtgatttttttaaaaaatttgaatctgtagtaaagagtgcaaaataagatgctatcaaatatttgtattataaataatatgaatcttttacttctaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0113N10.1" temp_strand="+" temp_description="C06SLm0113N10.1  AC219227.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0113N10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="20646" stop="48389"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20946" g_stop="21116" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="171" r_length="171" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21117" i_stop="21240" i_length="124">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21241" g_stop="21598" g_length="358"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="529" r_length="358" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21599" i_stop="21688" i_length="90">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.559" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21689" g_stop="21719" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="530" r_stop="560" r_length="31" r_score="0.516"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0113N10.1" gen_strand="+" ref_id="SGN-E721562" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0113N10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E721562" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20946" e_stop="21116"/>
          <exon e_start="21241" e_stop="21598"/>
          <exon e_start="21689" e_stop="21719"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACTCATTTGCTTTATTGTGTTGAAAAGTAGTAATTAAGAACTTTAATCCCTTTTTTTTCAAACTAGTAATCCATATTTGAATGGCCACCAGTTTACAGAACCGTGGATTCGTTAGCTTGAAGAAGGGATTTTTGAACTATATTAATCAAAGTTTTGGCTCGGATCTTGTGTATGTATTAGAAAATCATTGAATAAGTAGTACTTCATTGATTTCGAACTCAGGAAATTGAATGGTTTGTGTCGTAAAGTTCAGATCCTTGATCCTTATTTATATGTGTGTGTTTTTTGTGCAGGAGGGCAGTGCATGCATCAGTGTACGATAAGAATCTGGAGGAGTCTGTGCTGGTGCCAGATGAAGTGATCAAGGCGAAATCGGATAAGTACTGGACTCCTCATCCTCATACTGGTGTGTTTGGACCAGCCACTGATCATCATATCGGTATCAGGGCTGTGACTGCTAGTGTAGATTCTGTGTTGGAACAGAAGGCCTTCTTCCGCCCACTCGAGGATCTTGAGAAGCCAGCTTATGTTTAAATTTCTTTCAATCTGTAGTGATTTTTTTAAAAAATTTGAATCTGTAGTAAAGAGTGCAGAATAAGATGCTATCAAATATTTGTATTATAAATAATATGAATCTTTTACTTCTATCAAGTTCGCTCTGTGTTGGGGAAGAAAAGTTGTACCATCCAAATCCTCCCAAAGAAATTACTCTTTCAATGTTGCTGAAAATTTGATAAACAGAAAGAAACTCAATAGATTTAAGAACTTCAGA</genome_strand>
        <mrna_strand>TTACTCATTTGCTTTATTGTGTTGAAAAGTAGTAATTAAGAACTTTAATCCCTTTTTTTTCAAACTAGTAATCCATATTTGAATGGCCACCAGTTTACAGAACCGTGGATTCGTTAGCTTGAAAAAGGGATTTTTGAACTATATTAATCAAAGTTTTGGCTCGGATCTTGT............................................................................................................................GAGGGCAGTGCATGCATCAGTGTACGATAAGAATCTGGAGGAGTCTGTGCTGGTGCCAGATGAAGTGATCAAGGCGAAATCGGATAAGTACTGGACTCCTCATCCTCATACTGGTGTGTTTGGACCAGCCACTGATCATCATATCGGTATCAGGGCTGTGACTGCTAGTGTAAATTCTGTGTTGGAACAGAAGGCCTTCTTCCGCCCACTCGAGGATCTTGAGAAGCCAGCTTATGTTTAAATTTCTTTCAATCTGTAGTGATTTTTTTAAAAAATTTGAATCTGTAGTAAAGAGTGCAAAATAAGATGCTATCAAATATTTGTATTATAAATAATATGAATCTTTTACTTCTAAAAA..........................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E714447" ref_strand="+" ref_description="SGN-E714447 [FB11BH07]">
      <seq>ctcatttgctttattgtgttgaaaagtagtaattaagaactttaatcccttttttttcaaactagtaatccatatttgaatggccaccagtttacagaaccgtggattcgttagcttgaagaagggatttttgaactatattaatcaaagttttggctcggatcttgtgagggcagtgcatgcatcagtgtacgataagaatctggaggagtctgtgctggtgccagatgaagtgatcaaggcgaaatcggataagtactggactcctcatcctcatactggtgtgtttggaccagccactgatcatcatatcggtatcagggctgtgactgctagtgtagattctgtgttggaacagaaggccttcttccgcccactcgaggatcttgagaagccagcttatgtttaaatttctttcaatctgtagtgatttttttaaaaaatttgaatctgtagtaaagagtgcagaataagatgctatcaaatatttgtattataaataatatgaatcttttacttctatcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0113N10.1" temp_strand="+" temp_description="C06SLm0113N10.1  AC219227.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0113N10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="20649" stop="21898"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20949" g_stop="21116" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="168" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21117" i_stop="21240" i_length="124">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21241" g_stop="21598" g_length="358"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="526" r_length="358" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21599" i_stop="21688" i_length="90">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.559" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21689" g_stop="21696" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="527" r_stop="534" r_length="8" r_score="0.750"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0113N10.1" gen_strand="+" ref_id="SGN-E714447" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0113N10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E714447" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20949" e_stop="21116"/>
          <exon e_start="21241" e_stop="21598"/>
          <exon e_start="21689" e_stop="21696"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCATTTGCTTTATTGTGTTGAAAAGTAGTAATTAAGAACTTTAATCCCTTTTTTTTCAAACTAGTAATCCATATTTGAATGGCCACCAGTTTACAGAACCGTGGATTCGTTAGCTTGAAGAAGGGATTTTTGAACTATATTAATCAAAGTTTTGGCTCGGATCTTGTGTATGTATTAGAAAATCATTGAATAAGTAGTACTTCATTGATTTCGAACTCAGGAAATTGAATGGTTTGTGTCGTAAAGTTCAGATCCTTGATCCTTATTTATATGTGTGTGTTTTTTGTGCAGGAGGGCAGTGCATGCATCAGTGTACGATAAGAATCTGGAGGAGTCTGTGCTGGTGCCAGATGAAGTGATCAAGGCGAAATCGGATAAGTACTGGACTCCTCATCCTCATACTGGTGTGTTTGGACCAGCCACTGATCATCATATCGGTATCAGGGCTGTGACTGCTAGTGTAGATTCTGTGTTGGAACAGAAGGCCTTCTTCCGCCCACTCGAGGATCTTGAGAAGCCAGCTTATGTTTAAATTTCTTTCAATCTGTAGTGATTTTTTTAAAAAATTTGAATCTGTAGTAAAGAGTGCAGAATAAGATGCTATCAAATATTTGTATTATAAATAATATGAATCTTTTACTTCTATCAAGTTCGCTCTGTGTTGGGGAAGAAAAGTTGTACCATCCAAATCCTCCCAAAGAAATTACTCTTTCAATGTTGCTGAAAATTTGATAAACAGAAAGAAAC</genome_strand>
        <mrna_strand>CTCATTTGCTTTATTGTGTTGAAAAGTAGTAATTAAGAACTTTAATCCCTTTTTTTTCAAACTAGTAATCCATATTTGAATGGCCACCAGTTTACAGAACCGTGGATTCGTTAGCTTGAAGAAGGGATTTTTGAACTATATTAATCAAAGTTTTGGCTCGGATCTTGT............................................................................................................................GAGGGCAGTGCATGCATCAGTGTACGATAAGAATCTGGAGGAGTCTGTGCTGGTGCCAGATGAAGTGATCAAGGCGAAATCGGATAAGTACTGGACTCCTCATCCTCATACTGGTGTGTTTGGACCAGCCACTGATCATCATATCGGTATCAGGGCTGTGACTGCTAGTGTAGATTCTGTGTTGGAACAGAAGGCCTTCTTCCGCCCACTCGAGGATCTTGAGAAGCCAGCTTATGTTTAAATTTCTTTCAATCTGTAGTGATTTTTTTAAAAAATTTGAATCTGTAGTAAAGAGTGCAGAATAAGATGCTATCAAATATTTGTATTATAAATAATATGAATCTTTTACTTCTATCAA..........................................................................................AAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E714309" ref_strand="+" ref_description="SGN-E714309 [FB11AD06]">
      <seq>catttgctttattgtgttgaaaagtagtaattaagaactttaatcccttttttttcaactagtaatccatatttgaatggccaccagtttacagaaccgtggattcgttagcttgaagaagggatttttgaactatattaatcaaagttttggctcggatcttgtgagggcagtgcatgcatcagtgtacgataagaatctggaggagtctgtgctggtgccagatgaagtgatcaaggcgaaatcggataagtactggactcctcatcctcatactggtgtgtttggaccagccactgatcatcatatcggtatcagggctgtgactgctagtgtagattctgtgttggaacagaaggccttcttccgcccactcgaggatcttgagaagccagcttatgtttaaatttctttcaatctgtagtgatttttttaaaaaatttgaatctgtagtaaagagtgcagaataagatgctatcaaatatttgtattataaataatatgaatcttttacttctatcaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0113N10.1" temp_strand="+" temp_description="C06SLm0113N10.1  AC219227.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0113N10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="20651" stop="21898"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20951" g_stop="21116" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="165" r_length="165" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21117" i_stop="21240" i_length="124">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21241" g_stop="21598" g_length="358"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="523" r_length="358" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="524" polyA_stop="533"/>
      <MATCH_line gen_id="C06SLm0113N10.1" gen_strand="+" ref_id="SGN-E714309" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>524</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0113N10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E714309" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20951" e_stop="21116"/>
          <exon e_start="21241" e_stop="21598"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTTGCTTTATTGTGTTGAAAAGTAGTAATTAAGAACTTTAATCCCTTTTTTTTCAAACTAGTAATCCATATTTGAATGGCCACCAGTTTACAGAACCGTGGATTCGTTAGCTTGAAGAAGGGATTTTTGAACTATATTAATCAAAGTTTTGGCTCGGATCTTGTGTATGTATTAGAAAATCATTGAATAAGTAGTACTTCATTGATTTCGAACTCAGGAAATTGAATGGTTTGTGTCGTAAAGTTCAGATCCTTGATCCTTATTTATATGTGTGTGTTTTTTGTGCAGGAGGGCAGTGCATGCATCAGTGTACGATAAGAATCTGGAGGAGTCTGTGCTGGTGCCAGATGAAGTGATCAAGGCGAAATCGGATAAGTACTGGACTCCTCATCCTCATACTGGTGTGTTTGGACCAGCCACTGATCATCATATCGGTATCAGGGCTGTGACTGCTAGTGTAGATTCTGTGTTGGAACAGAAGGCCTTCTTCCGCCCACTCGAGGATCTTGAGAAGCCAGCTTATGTTTAAATTTCTTTCAATCTGTAGTGATTTTTTTAAAAAATTTGAATCTGTAGTAAAGAGTGCAGAATAAGATGCTATCAAATATTTGTATTATAAATAATATGAATCTTTTACTTCTATCAA</genome_strand>
        <mrna_strand>CATTTGCTTTATTGTGTTGAAAAGTAGTAATTAAGAACTTTAATCCCTTTTTTTTC-AACTAGTAATCCATATTTGAATGGCCACCAGTTTACAGAACCGTGGATTCGTTAGCTTGAAGAAGGGATTTTTGAACTATATTAATCAAAGTTTTGGCTCGGATCTTGT............................................................................................................................GAGGGCAGTGCATGCATCAGTGTACGATAAGAATCTGGAGGAGTCTGTGCTGGTGCCAGATGAAGTGATCAAGGCGAAATCGGATAAGTACTGGACTCCTCATCCTCATACTGGTGTGTTTGGACCAGCCACTGATCATCATATCGGTATCAGGGCTGTGACTGCTAGTGTAGATTCTGTGTTGGAACAGAAGGCCTTCTTCCGCCCACTCGAGGATCTTGAGAAGCCAGCTTATGTTTAAATTTCTTTCAATCTGTAGTGATTTTTTTAAAAAATTTGAATCTGTAGTAAAGAGTGCAGAATAAGATGCTATCAAATATTTGTATTATAAATAATATGAATCTTTTACTTCTATCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E225607" ref_strand="+" ref_description="SGN-E225607 [cLEL-17-I2](-)">
      <seq>tcaaagttttggctcggatcttgtgagggcagtgcatgcatcagtgtacgatgagaatctggaggagtctgtgctggtgccagatgaagtgatcaaggcgaaatcggataagtactggactcctcatcctcatactggtgtgtttggaccagccactgatcatcatatcggtatcagggctgtgactgctagtgtagattctgtgttggaacagaaggccttcttccgcccactcgaggatcttgagaagccagcttatgtttaaatttctttcaatctgtagtgatttttttaaaaaatttgaatctgtagtaaagagtgcagaataagatgctatcaaatatttgtattataaataatatgaatcttttacttctccaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0113N10.1" temp_strand="+" temp_description="C06SLm0113N10.1  AC219227.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0113N10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="20793" stop="48389"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21093" g_stop="21116" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="24" r_length="24" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21117" i_stop="21240" i_length="124">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21241" g_stop="21598" g_length="358"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="382" r_length="358" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21599" i_stop="21688" i_length="90">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.559" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21689" g_stop="21704" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="398" r_length="16" r_score="0.625"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0113N10.1" gen_strand="+" ref_id="SGN-E225607" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>398</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0113N10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E225607" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21093" e_stop="21116"/>
          <exon e_start="21241" e_stop="21598"/>
          <exon e_start="21689" e_stop="21704"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAAGTTTTGGCTCGGATCTTGTGTATGTATTAGAAAATCATTGAATAAGTAGTACTTCATTGATTTCGAACTCAGGAAATTGAATGGTTTGTGTCGTAAAGTTCAGATCCTTGATCCTTATTTATATGTGTGTGTTTTTTGTGCAGGAGGGCAGTGCATGCATCAGTGTACGATAAGAATCTGGAGGAGTCTGTGCTGGTGCCAGATGAAGTGATCAAGGCGAAATCGGATAAGTACTGGACTCCTCATCCTCATACTGGTGTGTTTGGACCAGCCACTGATCATCATATCGGTATCAGGGCTGTGACTGCTAGTGTAGATTCTGTGTTGGAACAGAAGGCCTTCTTCCGCCCACTCGAGGATCTTGAGAAGCCAGCTTATGTTTAAATTTCTTTCAATCTGTAGTGATTTTTTTAAAAAATTTGAATCTGTAGTAAAGAGTGCAGAATAAGATGCTATCAAATATTTGTATTATAAATAATATGAATCTTTTACTTCTATCAAGTTCGCTCTGTGTTGGGGAAGAAAAGTTGTACCATCCAAATCCTCCCAAAGAAATTACTCTTTCAATGTTGCTGAAAATTTGATAAACAGAAAGAAACTCAATAGA</genome_strand>
        <mrna_strand>TCAAAGTTTTGGCTCGGATCTTGT............................................................................................................................GAGGGCAGTGCATGCATCAGTGTACGATGAGAATCTGGAGGAGTCTGTGCTGGTGCCAGATGAAGTGATCAAGGCGAAATCGGATAAGTACTGGACTCCTCATCCTCATACTGGTGTGTTTGGACCAGCCACTGATCATCATATCGGTATCAGGGCTGTGACTGCTAGTGTAGATTCTGTGTTGGAACAGAAGGCCTTCTTCCGCCCACTCGAGGATCTTGAGAAGCCAGCTTATGTTTAAATTTCTTTCAATCTGTAGTGATTTTTTTAAAAAATTTGAATCTGTAGTAAAGAGTGCAGAATAAGATGCTATCAAATATTTGTATTATAAATAATATGAATCTTTTACTTCTCCAAA..........................................................................................AAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E216397" ref_strand="-" ref_description="SGN-E216397 [cLEL-13-M22](-)">
      <seq>tttttttttttttttttttggggatagaagtaaaagattcatattatttataatacaaatatttgatagcatcttattctgcactctttactacagattcaaattttttaaaaaaatcactacagattgaaagaaatttaaacataagctggcttctcaagatcctcgagtgggcggaagaaggccttctgttccaacacagaatctacactagcagtcacagccctgataccgatatgatgatcagtggctggtccaaacacaccagtatgaggatgaggagtccagtacttatccgatttcgccttgatcacttcatctggcaccagcacagactcctccagattcttatcgtacactgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0113N10.1" temp_strand="-" temp_description="C06SLm0113N10.1  AC219227.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0113N10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="48389" stop="20955"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21735" g_stop="21714" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="22" r_length="22" r_score="0.455"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21713" i_stop="21597" i_length="117">
            <donor d_prob="0.745" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21596" g_stop="21255" g_length="342"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="364" r_length="342" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0113N10.1" gen_strand="-" ref_id="SGN-E216397" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>364</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0113N10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E216397" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="21735" e_stop="21714"/>
          <exon e_start="21596" e_stop="21255"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCATTATTACATCTCTCTGAAGTTCTTAAATCTATTGAGTTTCTTTCTGTTTATCAAATTTTCAGCAACATTGAAAGAGTAATTTCTTTGGGAGGATTTGGATGGTACAACTTTTCTTCCCCAACACAGAGCGAACTTGATAGAAGTAAAAGATTCATATTATTTATAATACAAATATTTGATAGCATCTTATTCTGCACTCTTTACTACAGATTCAAATTTTTTAAAAAAATCACTACAGATTGAAAGAAATTTAAACATAAGCTGGCTTCTCAAGATCCTCGAGTGGGCGGAAGAAGGCCTTCTGTTCCAACACAGAATCTACACTAGCAGTCACAGCCCTGATACCGATATGATGATCAGTGGCTGGTCCAAACACACCAGTATGAGGATGAGGAGTCCAGTACTTATCCGATTTCGCCTTGATCACTTCATCTGGCACCAGCACAGACTCCTCCAGATTCTTATCGTACACTGATG</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTTTTTGGG.....................................................................................................................GATAGAAGTAAAAGATTCATATTATTTATAATACAAATATTTGATAGCATCTTATTCTGCACTCTTTACTACAGATTCAAATTTTTTAAAAAAATCACTACAGATTGAAAGAAATTTAAACATAAGCTGGCTTCTCAAGATCCTCGAGTGGGCGGAAGAAGGCCTTCTGTTCCAACACAGAATCTACACTAGCAGTCACAGCCCTGATACCGATATGATGATCAGTGGCTGGTCCAAACACACCAGTATGAGGATGAGGAGTCCAGTACTTATCCGATTTCGCCTTGATCACTTCATCTGGCACCAGCACAGACTCCTCCAGATTCTTATCGTACACTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E418376" ref_strand="+" ref_description="SGN-E418376 [STM-27-I24]">
      <seq>aagaggaattctcgggaaaatttggataggttcattcctaatcgatcggcaatggatatggactatgcacattacatgttgacagagggaaggaaaggtaaggaaaatccagctgttgattctccctccagagaggcatacaggaagcagcttgcggaaacattcaacatgaacaggacccgaatattggcgttcaagaacaagccacccacttctgttgaggctattccaaacaacttctcatcatctgttcaccaacaggcgaagactgctaaaccccgtcgatacattcctcagacctctgaaaggacattagatgctccagatctagtggatgactactatttgaatttgttagattggggcagcagcaatgttctttctattgctctaggcagcactgtatatctgtgggatgcatctgatggtgccacttcagaattggtcactgttgatgaagagcatggtcctgttacaagtgttaaatgggctcctgatggtagacatattgctcttggtctgaacaattctgatgttcagctctgggatacaacggcaaatcggctgctgagaactatgaaaggtggtcacagatcccgagttggcgctctagattggaacaatcacgtattgacaactgggggcatggatggtcagatcataaacaatgatgtgagggtgcgatcgccaattgtggatacataccaaagacatcaccaagaagtttgtggtttaaaatggtcagcctctggccaacaactagcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0113N10.1" temp_strand="-" temp_description="C06SLm0113N10.1  AC219227.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0113N10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="24102" stop="22516"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23798" g_stop="23523" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="297" r_length="276" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23522" i_stop="23367" i_length="156">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23366" g_stop="23097" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="567" r_length="270" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23096" i_stop="23015" i_length="82">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23014" g_stop="22816" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="568" r_stop="766" r_length="199" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0113N10.1" gen_strand="-" ref_id="SGN-E418376" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>745</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0113N10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E418376" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23798" e_stop="23523"/>
          <exon e_start="23366" e_stop="23097"/>
          <exon e_start="23014" e_stop="22816"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGATAGGTTCATTCCTAATCGTTCGGCAATGGATATGGACTATGCACATTACATGTTGACAGAGGGAAGGAAAGGTAAGGAAAATCCAGCTGTTGATTCTCCCTCCAGAGAGGCATACAGGAAGCAGCTTGCGGAAACATTCAACATGAACAGGTCCCGCATATTGGCGTTCAAGAACAAGCCACCCACTTCTGTTGAGGGTATTCCAAACGACTTCTCATCATCTGTTCACCAACAGGCGAAGACTGCTAAACCGCGTCGATACATTCCTCAGGTGAGTTTACTTAGGTTGTCTAAAGTGAGTATTACATTTCATGAGTTATTGTGCCAATTGTGCTTAACTTTTAAGTCCAAGATTTAGGCATATTGCTGTAAATAGTAACTGTTACTGAATCCCATCCTTATCAGTTTCATCGGTATATTTTTGCAGACCTCTGAAAGGACATTAGATGCTCCAGATCTAGTGGATGACTACTATTTGAATTTGTTAGATTGGGGCAGCAGCAATGTTCTTTCTATTGCTCTAGGCAGCACTGTATATCTGTGGGATGCATCTGATGGTGCCACTTCAGAATTGGTCACTGTTGACGAAGAGCATGGTCCTGTTACAAGTGTTAAATGGGCTCCTGATGGTAGACATATTGCTCTTGGTTTGAACAATTCCGATGTTCAGCTCTGGGATACAACGGCAAATCGGCTGGTTTGTTTCTTGAAATTTTCTGTTCATGTTGTTTATTTTGAGCGATTCTTATGCTAATATATGATTTTATACATTGGTGCAGCTGAGAACTATGAGAGGTGGTCACAGATCCCGAGTTGGCGCTCTAGATTGGAACAATCACTTATTAACAACTGGGGGCATGGATGGTCAGATCAGAAACAATGATGTGAGAGTGAGATCGCCAATTGTTGATACCTACCAAGGACATAACCAAGAAGTTTGTGGTTTAAAATGGTCAGCCTCTGGTCAACAATTAGCTA</genome_strand>
        <mrna_strand>TTGGATAGGTTCATTCCTAATCGATCGGCAATGGATATGGACTATGCACATTACATGTTGACAGAGGGAAGGAAAGGTAAGGAAAATCCAGCTGTTGATTCTCCCTCCAGAGAGGCATACAGGAAGCAGCTTGCGGAAACATTCAACATGAACAGGACCCGAATATTGGCGTTCAAGAACAAGCCACCCACTTCTGTTGAGGCTATTCCAAACAACTTCTCATCATCTGTTCACCAACAGGCGAAGACTGCTAAACCCCGTCGATACATTCCTCAG............................................................................................................................................................ACCTCTGAAAGGACATTAGATGCTCCAGATCTAGTGGATGACTACTATTTGAATTTGTTAGATTGGGGCAGCAGCAATGTTCTTTCTATTGCTCTAGGCAGCACTGTATATCTGTGGGATGCATCTGATGGTGCCACTTCAGAATTGGTCACTGTTGATGAAGAGCATGGTCCTGTTACAAGTGTTAAATGGGCTCCTGATGGTAGACATATTGCTCTTGGTCTGAACAATTCTGATGTTCAGCTCTGGGATACAACGGCAAATCGGCTG..................................................................................CTGAGAACTATGAAAGGTGGTCACAGATCCCGAGTTGGCGCTCTAGATTGGAACAATCACGTATTGACAACTGGGGGCATGGATGGTCAGATCATAAACAATGATGTGAGGGTGCGATCGCCAATTGTGGATACATACCAAAGACATCACCAAGAAGTTTGTGGTTTAAAATGGTCAGCCTCTGGCCAACAACTAGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E441434" ref_strand="+" ref_description="SGN-E441434 [cSTA-30-I24]">
      <seq>aagaggaattctcgggaaaatttggataggttcattcctaatcgatcggcaatggatatggactatgcacattacatgttgacagagggaaggaaaggtaaggaaaatccagctgttgattctccctccagagaggcatacaggaagcagcttgcggaaacattcaacatgaacaggacccgaatattggcgttcaagaacaagccacccacttctgttgaggctattccaaacaacttctcatcatctgttcaccaacaggcgaagactgctaaaccccgtcgatacattcctcagacctctgaaaggacattagatgctccagatctagtggatgactactatttgaatttgttagattggggcagcagcaatgttctttctattgctctaggcagcactgtatatctgtgggatgcatctgatggtgccacttcagaattggtcactgttgatgaagagcatggtcctgttacaagtgttaaatgggctcctgatggtagacatattgctcttggtctgaacaattctgatgttcagctctgggatacaacggcaaatcggctgctgagaactatgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0113N10.1" temp_strand="-" temp_description="C06SLm0113N10.1  AC219227.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0113N10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="24102" stop="22795"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23798" g_stop="23523" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="297" r_length="276" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23522" i_stop="23367" i_length="156">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23366" g_stop="23097" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="567" r_length="270" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23096" i_stop="23015" i_length="82">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23014" g_stop="23001" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="568" r_stop="581" r_length="14" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0113N10.1" gen_strand="-" ref_id="SGN-E441434" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0113N10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E441434" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23798" e_stop="23523"/>
          <exon e_start="23366" e_stop="23097"/>
          <exon e_start="23014" e_stop="23001"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGATAGGTTCATTCCTAATCGTTCGGCAATGGATATGGACTATGCACATTACATGTTGACAGAGGGAAGGAAAGGTAAGGAAAATCCAGCTGTTGATTCTCCCTCCAGAGAGGCATACAGGAAGCAGCTTGCGGAAACATTCAACATGAACAGGTCCCGCATATTGGCGTTCAAGAACAAGCCACCCACTTCTGTTGAGGGTATTCCAAACGACTTCTCATCATCTGTTCACCAACAGGCGAAGACTGCTAAACCGCGTCGATACATTCCTCAGGTGAGTTTACTTAGGTTGTCTAAAGTGAGTATTACATTTCATGAGTTATTGTGCCAATTGTGCTTAACTTTTAAGTCCAAGATTTAGGCATATTGCTGTAAATAGTAACTGTTACTGAATCCCATCCTTATCAGTTTCATCGGTATATTTTTGCAGACCTCTGAAAGGACATTAGATGCTCCAGATCTAGTGGATGACTACTATTTGAATTTGTTAGATTGGGGCAGCAGCAATGTTCTTTCTATTGCTCTAGGCAGCACTGTATATCTGTGGGATGCATCTGATGGTGCCACTTCAGAATTGGTCACTGTTGACGAAGAGCATGGTCCTGTTACAAGTGTTAAATGGGCTCCTGATGGTAGACATATTGCTCTTGGTTTGAACAATTCCGATGTTCAGCTCTGGGATACAACGGCAAATCGGCTGGTTTGTTTCTTGAAATTTTCTGTTCATGTTGTTTATTTTGAGCGATTCTTATGCTAATATATGATTTTATACATTGGTGCAGCTGAGAACTATGAG</genome_strand>
        <mrna_strand>TTGGATAGGTTCATTCCTAATCGATCGGCAATGGATATGGACTATGCACATTACATGTTGACAGAGGGAAGGAAAGGTAAGGAAAATCCAGCTGTTGATTCTCCCTCCAGAGAGGCATACAGGAAGCAGCTTGCGGAAACATTCAACATGAACAGGACCCGAATATTGGCGTTCAAGAACAAGCCACCCACTTCTGTTGAGGCTATTCCAAACAACTTCTCATCATCTGTTCACCAACAGGCGAAGACTGCTAAACCCCGTCGATACATTCCTCAG............................................................................................................................................................ACCTCTGAAAGGACATTAGATGCTCCAGATCTAGTGGATGACTACTATTTGAATTTGTTAGATTGGGGCAGCAGCAATGTTCTTTCTATTGCTCTAGGCAGCACTGTATATCTGTGGGATGCATCTGATGGTGCCACTTCAGAATTGGTCACTGTTGATGAAGAGCATGGTCCTGTTACAAGTGTTAAATGGGCTCCTGATGGTAGACATATTGCTCTTGGTCTGAACAATTCTGATGTTCAGCTCTGGGATACAACGGCAAATCGGCTG..................................................................................CTGAGAACTATGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E203020" ref_strand="+" ref_description="SGN-E203020 [cLEB-1-L2]">
      <seq>gcacgaggaaattctcgggataatttggataggttcattcctaatcgttcggcaatggatatggactatgcacattacatgttgacagagggaaggaaaggtaaggaaaatccagctgttgattctccctccagagaggcatacaggaagcagcttgcggaaacattcaacatgaacaggtcccgcatattggcgttcaagaacaagccacccacttctgttgagggtattccaaacgacttctcatcatctgttcaccaacaggcgaagactgctaaaccgcgtcgatacattcctcagacctctgaaaggacattagatgctccagatctagtggatgactactatttgaatttgttagattggggcagcagcaatgttctttctattgctctaggcagcactgtatatctgtgggatgcatctgatggtgccacttcagaattggtcactgttgacgaagagcatggtcctgttacaagtgttaaatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0113N10.1" temp_strand="-" temp_description="C06SLm0113N10.1  AC219227.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0113N10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="24751" stop="22875"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24452" g_stop="24428" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="24" r_length="24" r_score="0.840"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24427" i_stop="23799" i_length="629">
            <donor d_prob="0.983" d_score="0.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23798" g_stop="23523" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="300" r_length="276" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23522" i_stop="23367" i_length="156">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23366" g_stop="23175" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="492" r_length="192" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0113N10.1" gen_strand="-" ref_id="SGN-E203020" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>493</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0113N10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E203020" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24452" e_stop="24428"/>
          <exon e_start="23798" e_stop="23523"/>
          <exon e_start="23366" e_stop="23175"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAAAGAGAAATTCTCGGGATAATGTAAGTTGGTTCTCTACTTGCTTCCGATTATGGACTCTAGAAAGTACTAATTGTTTCAATTTATTGGTATAATCTGTGTTACACTTGGATTTTGAAATTAAGAAATAGGCTAAAAGGGAGATGGGTTTTCATATACTACGTGTCATCTGGGGTTGGGTTTAATTTTTATAGAACAAATTTGAGGTTTTATGTGAGTTTCTGATATGTGGTACTTTAGCCGAGTGTCTTTCGGAAACAATCTCTCTACCTCCGGAAGGTAGGGTCAGGTTGACATGCACTCTAACCTCTGGGTATGTTGTCGTTTTATGTGAGTTCTAAAGAGGAGGGCATTAACATAGACATTGATTGCTGATTTGGGTTATTACAGTTGGTTAGTTTCATTGCAGTTCTACTAACCACAGGTTATTTTCTCTAAAATGTACCACTTGTTTCCTTTTTTTGCCACAATTTGTATTATATTGAATTTTGAACTAAGAGGTCAAAAGGGAGATGATTTTTCATCACTTTGCCATCTGGGGTTGGCTATGATTTTGTAGAATTAATTGAGGTTACTTAGACTTGTTTTATGTGAGTTCTTAGAAGAGGAGGGCTTTGACATAGACATTGATTGTTGATTTGTGTTACTACAGTTGGATAGGTTCATTCCTAATCGTTCGGCAATGGATATGGACTATGCACATTACATGTTGACAGAGGGAAGGAAAGGTAAGGAAAATCCAGCTGTTGATTCTCCCTCCAGAGAGGCATACAGGAAGCAGCTTGCGGAAACATTCAACATGAACAGGTCCCGCATATTGGCGTTCAAGAACAAGCCACCCACTTCTGTTGAGGGTATTCCAAACGACTTCTCATCATCTGTTCACCAACAGGCGAAGACTGCTAAACCGCGTCGATACATTCCTCAGGTGAGTTTACTTAGGTTGTCTAAAGTGAGTATTACATTTCATGAGTTATTGTGCCAATTGTGCTTAACTTTTAAGTCCAAGATTTAGGCATATTGCTGTAAATAGTAACTGTTACTGAATCCCATCCTTATCAGTTTCATCGGTATATTTTTGCAGACCTCTGAAAGGACATTAGATGCTCCAGATCTAGTGGATGACTACTATTTGAATTTGTTAGATTGGGGCAGCAGCAATGTTCTTTCTATTGCTCTAGGCAGCACTGTATATCTGTGGGATGCATCTGATGGTGCCACTTCAGAATTGGTCACTGTTGACGAAGAGCATGGTCCTGTTACAAGTGTTAAATGG</genome_strand>
        <mrna_strand>GCACGAG-GAAATTCTCGGGATAAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGATAGGTTCATTCCTAATCGTTCGGCAATGGATATGGACTATGCACATTACATGTTGACAGAGGGAAGGAAAGGTAAGGAAAATCCAGCTGTTGATTCTCCCTCCAGAGAGGCATACAGGAAGCAGCTTGCGGAAACATTCAACATGAACAGGTCCCGCATATTGGCGTTCAAGAACAAGCCACCCACTTCTGTTGAGGGTATTCCAAACGACTTCTCATCATCTGTTCACCAACAGGCGAAGACTGCTAAACCGCGTCGATACATTCCTCAG............................................................................................................................................................ACCTCTGAAAGGACATTAGATGCTCCAGATCTAGTGGATGACTACTATTTGAATTTGTTAGATTGGGGCAGCAGCAATGTTCTTTCTATTGCTCTAGGCAGCACTGTATATCTGTGGGATGCATCTGATGGTGCCACTTCAGAATTGGTCACTGTTGACGAAGAGCATGGTCCTGTTACAAGTGTTAAATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E560959" ref_strand="+" ref_description="SGN-E560959 [20695]">
      <seq>ttcttctctctcttcttagcgaacccgaagcgcacccgcaagcgcacttccatcttacttgctttaatttgtgctgcaatattattattattataaccctgatttttgttttgcaggctttaataatcttgtttctttgtttattgaaatctctgtttttgtatctcttttttttttgtgctaacaccatggatgcaggatcattgagttctgtctcagcaagtaagaccaaatctcgttgccctctccaggaacaatatctacaaaagaggaattctcgggaaaatttggataggttcattcctaatcgatcggcaatggatatggactatgcacattacatgttgacagagggaaggaaaggtaaggaaaatccagctgttgattctccctccagagaggcatacaggaagcagcttgcggaaacattcaacatgaacaggacccgaatattggcgttcaagaacaagccacccacttctgttgaggctattccaaacgacttttcatcatctgttcaccaacaggcgaagactgctaaaccccgtccatacattcctcagacctctgaaaggacattagatgctccagatctagttggatgacttactatttgaatttcgttaagattggggcaccagcaaatgttctttctattgctctagggcagcactgataatctgtgggatgcatctgatgggtgccact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0113N10.1" temp_strand="-" temp_description="C06SLm0113N10.1  AC219227.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0113N10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="24994" stop="22929"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24676" g_stop="24428" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="287" r_length="246" r_score="0.892"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24427" i_stop="23799" i_length="629">
            <donor d_prob="0.983" d_score="0.94"/>
            <acceptor a_prob="0.949" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23798" g_stop="23523" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="563" r_length="276" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23522" i_stop="23367" i_length="156">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.988" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23366" g_stop="23229" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="564" r_stop="708" r_length="145" r_score="0.870"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0113N10.1" gen_strand="-" ref_id="SGN-E560959" ref_strand="+">
        <total_alignment_score>0.922</total_alignment_score>
        <cumulative_length_of_scored_exons>663</cumulative_length_of_scored_exons>
        <coverage percentage="0.936" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0113N10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E560959" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24676" e_stop="24428"/>
          <exon e_start="23798" e_stop="23523"/>
          <exon e_start="23366" e_stop="23229"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGCACTTCCATTTTACTTGCTTTAATTTGTTCTTCAGTATTGTTATTGTTATTATAACTCTGATCTTCGTTTTGCAGGCTGTAATATTCTTGTTTCGTTTTTTTTATTGTGATCTCTGGTTTTGTA--TCTTTTTTTTTTGTGCTAACACCATGGATGCAGGATCATTGAGTTCTGTCTCAGCAAGTAAGAACAAATCTCGTTGCCCTCTTCAGGAACAATATCTACAAAAGAGAAATTCTCGGGATAATGTAAGTTGGTTCTCTACTTGCTTCCGATTATGGACTCTAGAAAGTACTAATTGTTTCAATTTATTGGTATAATCTGTGTTACACTTGGATTTTGAAATTAAGAAATAGGCTAAAAGGGAGATGGGTTTTCATATACTACGTGTCATCTGGGGTTGGGTTTAATTTTTATAGAACAAATTTGAGGTTTTATGTGAGTTTCTGATATGTGGTACTTTAGCCGAGTGTCTTTCGGAAACAATCTCTCTACCTCCGGAAGGTAGGGTCAGGTTGACATGCACTCTAACCTCTGGGTATGTTGTCGTTTTATGTGAGTTCTAAAGAGGAGGGCATTAACATAGACATTGATTGCTGATTTGGGTTATTACAGTTGGTTAGTTTCATTGCAGTTCTACTAACCACAGGTTATTTTCTCTAAAATGTACCACTTGTTTCCTTTTTTTGCCACAATTTGTATTATATTGAATTTTGAACTAAGAGGTCAAAAGGGAGATGATTTTTCATCACTTTGCCATCTGGGGTTGGCTATGATTTTGTAGAATTAATTGAGGTTACTTAGACTTGTTTTATGTGAGTTCTTAGAAGAGGAGGGCTTTGACATAGACATTGATTGTTGATTTGTGTTACTACAGTTGGATAGGTTCATTCCTAATCGTTCGGCAATGGATATGGACTATGCACATTACATGTTGACAGAGGGAAGGAAAGGTAAGGAAAATCCAGCTGTTGATTCTCCCTCCAGAGAGGCATACAGGAAGCAGCTTGCGGAAACATTCAACATGAACAGGTCCCGCATATTGGCGTTCAAGAACAAGCCACCCACTTCTGTTGAGGGTATTCCAAACGACTTCTCATCATCTGTTCACCAACAGGCGAAGACTGCTAAACCGCGTCGATACATTCCTCAGGTGAGTTTACTTAGGTTGTCTAAAGTGAGTATTACATTTCATGAGTTATTGTGCCAATTGTGCTTAACTTTTAAGTCCAAGATTTAGGCATATTGCTGTAAATAGTAACTGTTACTGAATCCCATCCTTATCAGTTTCATCGGTATATTTTTGCAGACCTCTGAAAGGACATTAGATGCTCCAGATCTAG-TGGATGAC-TACTATTTGAATTT-GTT-AGATTGGGGCAGCAGC-AATGTTCTTTCTATTGCTCTA-GGCAGCACTGTATATCTGTGGGATGCATCTGAT-GGTGCCACT</genome_strand>
        <mrna_strand>GCGCACTTCCATCTTACTTGCTTTAATTTGTGCTGCAATA---TTATTATTATTATAACCCTGATTTTTGTTTTGCAGGCTTTAATAATCTTGTTTC--TTTGTTTATTGAAATCTCTGTTTTTGTATCTCTTTTTTTTTTGTGCTAACACCATGGATGCAGGATCATTGAGTTCTGTCTCAGCAAGTAAGACCAAATCTCGTTGCCCTCTCCAGGAACAATATCTACAAAAGAGGAATTCTCGGGAAAAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGATAGGTTCATTCCTAATCGATCGGCAATGGATATGGACTATGCACATTACATGTTGACAGAGGGAAGGAAAGGTAAGGAAAATCCAGCTGTTGATTCTCCCTCCAGAGAGGCATACAGGAAGCAGCTTGCGGAAACATTCAACATGAACAGGACCCGAATATTGGCGTTCAAGAACAAGCCACCCACTTCTGTTGAGGCTATTCCAAACGACTTTTCATCATCTGTTCACCAACAGGCGAAGACTGCTAAACCCCGTCCATACATTCCTCAG............................................................................................................................................................ACCTCTGAAAGGACATTAGATGCTCCAGATCTAGTTGGATGACTTACTATTTGAATTTCGTTAAGATTGGGGCACCAGCAAATGTTCTTTCTATTGCTCTAGGGCAGCACTGATAATCTGTGGGATGCATCTGATGGGTGCCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E473486" ref_strand="+" ref_description="SGN-E473486 [cSTB-32-F11]">
      <seq>gataggttcattcctaatcgatcggcaatggatatggactatgcacattacatgttgacagagggaaggaaaggtaaggaaaatccagctgttgattctccctccagagaagcatacaggaagcagcttgcggaaacattcaacatgaacaggacccgaatattggcgttcaagaacaagccacccacttctgttgaggctattccaaacgacttctcatcatctgttcaccagcaggcaaagactgctaaaccccgtcgatacattcctcagacctctgaaaggacattagatgctccagatctagtggatgactactatttgaatttgttagattggggcagcagcaatgttctttctattgctctaggcagcactgtatatctgtgggatgcatctgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0113N10.1" temp_strand="-" temp_description="C06SLm0113N10.1  AC219227.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0113N10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="24095" stop="22937"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23795" g_stop="23523" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="273" r_length="273" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23522" i_stop="23367" i_length="156">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23366" g_stop="23237" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="403" r_length="130" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0113N10.1" gen_strand="-" ref_id="SGN-E473486" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>403</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0113N10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E473486" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23795" e_stop="23523"/>
          <exon e_start="23366" e_stop="23237"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATAGGTTCATTCCTAATCGTTCGGCAATGGATATGGACTATGCACATTACATGTTGACAGAGGGAAGGAAAGGTAAGGAAAATCCAGCTGTTGATTCTCCCTCCAGAGAGGCATACAGGAAGCAGCTTGCGGAAACATTCAACATGAACAGGTCCCGCATATTGGCGTTCAAGAACAAGCCACCCACTTCTGTTGAGGGTATTCCAAACGACTTCTCATCATCTGTTCACCAACAGGCGAAGACTGCTAAACCGCGTCGATACATTCCTCAGGTGAGTTTACTTAGGTTGTCTAAAGTGAGTATTACATTTCATGAGTTATTGTGCCAATTGTGCTTAACTTTTAAGTCCAAGATTTAGGCATATTGCTGTAAATAGTAACTGTTACTGAATCCCATCCTTATCAGTTTCATCGGTATATTTTTGCAGACCTCTGAAAGGACATTAGATGCTCCAGATCTAGTGGATGACTACTATTTGAATTTGTTAGATTGGGGCAGCAGCAATGTTCTTTCTATTGCTCTAGGCAGCACTGTATATCTGTGGGATGCATCTGATG</genome_strand>
        <mrna_strand>GATAGGTTCATTCCTAATCGATCGGCAATGGATATGGACTATGCACATTACATGTTGACAGAGGGAAGGAAAGGTAAGGAAAATCCAGCTGTTGATTCTCCCTCCAGAGAAGCATACAGGAAGCAGCTTGCGGAAACATTCAACATGAACAGGACCCGAATATTGGCGTTCAAGAACAAGCCACCCACTTCTGTTGAGGCTATTCCAAACGACTTCTCATCATCTGTTCACCAGCAGGCAAAGACTGCTAAACCCCGTCGATACATTCCTCAG............................................................................................................................................................ACCTCTGAAAGGACATTAGATGCTCCAGATCTAGTGGATGACTACTATTTGAATTTGTTAGATTGGGGCAGCAGCAATGTTCTTTCTATTGCTCTAGGCAGCACTGTATATCTGTGGGATGCATCTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E459985" ref_strand="+" ref_description="SGN-E459985 [cPRO-29-J1]">
      <seq>gtccctccatcttcttcttctctctcttcttaagcgaacccgcaagcgcacttccatcttacttgctttaatttgtgctgcaatattattattattataaccctgatttttgttttgcaggctttaataatcttgtttctttgtttattgaaatctctgtttttgtatctctttttttttgtgctaacaccatggatgcaggatcattgagttctgtctcagcaagtaagaccaaatctcgttgccctctccaggaacaatatctacaaaagaggaattctcgggaaaatttggataggttcattcctaatcgatcggcaatggatatggactatgcacattacatgttgacagagggaaggaaaggtaaggaaaatccagctgttgattctccctccagagaagcatacaggaagcagcttgcggaaacattcaacatgaacaggacccgaatattggcgttcaagaacaagccacccacttctgttgaggctattccaaacgacttctcatcatctgttcaccagcaggcaaagactgctaaaccccgtcgatacattcctcagacctctgaaaggacattagatgctccagatctagtggatgactactatttgaatttgttagattggggcagcagcaatgttctttctattgctctangcagcactgtatatctgtgggatgcatctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0113N10.1" temp_strand="-" temp_description="C06SLm0113N10.1  AC219227.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0113N10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="25021" stop="22939"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24722" g_stop="24428" g_length="295"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="290" r_length="290" r_score="0.892"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24427" i_stop="23799" i_length="629">
            <donor d_prob="0.983" d_score="0.94"/>
            <acceptor a_prob="0.949" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23798" g_stop="23523" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="566" r_length="276" r_score="0.971"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23522" i_stop="23367" i_length="156">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23366" g_stop="23239" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="567" r_stop="694" r_length="128" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0113N10.1" gen_strand="-" ref_id="SGN-E459985" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>699</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0113N10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E459985" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24722" e_stop="24428"/>
          <exon e_start="23798" e_stop="23523"/>
          <exon e_start="23366" e_stop="23239"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTCCTCTATCTTCTTCTTCTCTCTCTTCTCAAGCAAATCCGCAACGCGCACTTCCATTTTACTTGCTTTAATTTGTTCTTCAGTATTGTTATTGTTATTATAACTCTGATCTTCGTTTTGCAGGCTGTAATATTCTTGTTTCGTTTTTTTTATTGTGATCTCTGGTTTTGTATCT-TTTTTTTTTGTGCTAACACCATGGATGCAGGATCATTGAGTTCTGTCTCAGCAAGTAAGAACAAATCTCGTTGCCCTCTTCAGGAACAATATCTACAAAAGAGAAATTCTCGGGATAATGTAAGTTGGTTCTCTACTTGCTTCCGATTATGGACTCTAGAAAGTACTAATTGTTTCAATTTATTGGTATAATCTGTGTTACACTTGGATTTTGAAATTAAGAAATAGGCTAAAAGGGAGATGGGTTTTCATATACTACGTGTCATCTGGGGTTGGGTTTAATTTTTATAGAACAAATTTGAGGTTTTATGTGAGTTTCTGATATGTGGTACTTTAGCCGAGTGTCTTTCGGAAACAATCTCTCTACCTCCGGAAGGTAGGGTCAGGTTGACATGCACTCTAACCTCTGGGTATGTTGTCGTTTTATGTGAGTTCTAAAGAGGAGGGCATTAACATAGACATTGATTGCTGATTTGGGTTATTACAGTTGGTTAGTTTCATTGCAGTTCTACTAACCACAGGTTATTTTCTCTAAAATGTACCACTTGTTTCCTTTTTTTGCCACAATTTGTATTATATTGAATTTTGAACTAAGAGGTCAAAAGGGAGATGATTTTTCATCACTTTGCCATCTGGGGTTGGCTATGATTTTGTAGAATTAATTGAGGTTACTTAGACTTGTTTTATGTGAGTTCTTAGAAGAGGAGGGCTTTGACATAGACATTGATTGTTGATTTGTGTTACTACAGTTGGATAGGTTCATTCCTAATCGTTCGGCAATGGATATGGACTATGCACATTACATGTTGACAGAGGGAAGGAAAGGTAAGGAAAATCCAGCTGTTGATTCTCCCTCCAGAGAGGCATACAGGAAGCAGCTTGCGGAAACATTCAACATGAACAGGTCCCGCATATTGGCGTTCAAGAACAAGCCACCCACTTCTGTTGAGGGTATTCCAAACGACTTCTCATCATCTGTTCACCAACAGGCGAAGACTGCTAAACCGCGTCGATACATTCCTCAGGTGAGTTTACTTAGGTTGTCTAAAGTGAGTATTACATTTCATGAGTTATTGTGCCAATTGTGCTTAACTTTTAAGTCCAAGATTTAGGCATATTGCTGTAAATAGTAACTGTTACTGAATCCCATCCTTATCAGTTTCATCGGTATATTTTTGCAGACCTCTGAAAGGACATTAGATGCTCCAGATCTAGTGGATGACTACTATTTGAATTTGTTAGATTGGGGCAGCAGCAATGTTCTTTCTATTGCTCTAGGCAGCACTGTATATCTGTGGGATGCATCTGA</genome_strand>
        <mrna_strand>GTCCCTCCATCTTCTTCTTCTCTCTCTTCTTAAGCGAACCCGCAA-GCGCACTTCCATCTTACTTGCTTTAATTTGTGCTGCA--A-TATTATTATTATTATAACCCTGATTTTTGTTTTGCAGGCTTTAATAATCTTGTTTC--TTTGTTTATTGAAATCTCTGTTTTTGTATCTCTTTTTTTTTGTGCTAACACCATGGATGCAGGATCATTGAGTTCTGTCTCAGCAAGTAAGACCAAATCTCGTTGCCCTCTCCAGGAACAATATCTACAAAAGAGGAATTCTCGGGAAAAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGATAGGTTCATTCCTAATCGATCGGCAATGGATATGGACTATGCACATTACATGTTGACAGAGGGAAGGAAAGGTAAGGAAAATCCAGCTGTTGATTCTCCCTCCAGAGAAGCATACAGGAAGCAGCTTGCGGAAACATTCAACATGAACAGGACCCGAATATTGGCGTTCAAGAACAAGCCACCCACTTCTGTTGAGGCTATTCCAAACGACTTCTCATCATCTGTTCACCAGCAGGCAAAGACTGCTAAACCCCGTCGATACATTCCTCAG............................................................................................................................................................ACCTCTGAAAGGACATTAGATGCTCCAGATCTAGTGGATGACTACTATTTGAATTTGTTAGATTGGGGCAGCAGCAATGTTCTTTCTATTGCTCTANGCAGCACTGTATATCTGTGGGATGCATCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E468901" ref_strand="+" ref_description="SGN-E468901 [cSTB-6-L9]">
      <seq>atcttcttcttctctctcttcttaagcgaacccgcaagcgcacttccaacttacttgctttaatttgtgctgccatattattattattataaccctgatttttgttttgcaggctttaataatcttgtttctttgtgtattgaaatctctgtttttgtatctcttttttttttgtgctaacaccatggatgcaggatcattgagttctgtctcagcaagtaagaccaaatctcgttgccctctccaggaacaatatctacaaaagaggaattctcgggaaaatttggataggttcattcctaatcgatcggcaatggatatggactatgcacattacatgttgacagagggaaggaaaggtaaggaaaatccagctgttgattctccctccagagaggcatacaggaagcagcttgcggaaacattcaacatgaacaggacccgaatattggcgttcaagaacaagccaccaacttctgttgaggctattccaaatgacttctcatcatctgttcaccaacaggcgaagactgctaaaccccgtcgatacattcctcagacctctgaaaggacattagatgctccagatctagtggatgactactatttgaatttgttagattggggcagcagcaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0113N10.1" temp_strand="-" temp_description="C06SLm0113N10.1  AC219227.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0113N10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="25014" stop="22989"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24714" g_stop="24428" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="283" r_length="283" r_score="0.882"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24427" i_stop="23799" i_length="629">
            <donor d_prob="0.983" d_score="0.94"/>
            <acceptor a_prob="0.949" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23798" g_stop="23523" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="559" r_length="276" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23522" i_stop="23367" i_length="156">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23366" g_stop="23289" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="560" r_stop="637" r_length="78" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0113N10.1" gen_strand="-" ref_id="SGN-E468901" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>641</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0113N10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E468901" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24714" e_stop="24428"/>
          <exon e_start="23798" e_stop="23523"/>
          <exon e_start="23366" e_stop="23289"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTTCTTCTTCTCTCTCTTCTCAAGCAAATCCGCAACGCGCACTTCCATTTTACTTGCTTTAATTTGTTCTTCAGTATTGTTATTGTTATTATAACTCTGATCTTCGTTTTGCAGGCTGTAATATTCTTGTTTCGTTTTTTTTATTGTGATCTCTGGTTTTGTA--TCTTTTTTTTTTGTGCTAACACCATGGATGCAGGATCATTGAGTTCTGTCTCAGCAAGTAAGAACAAATCTCGTTGCCCTCTTCAGGAACAATATCTACAAAAGAGAAATTCTCGGGATAATGTAAGTTGGTTCTCTACTTGCTTCCGATTATGGACTCTAGAAAGTACTAATTGTTTCAATTTATTGGTATAATCTGTGTTACACTTGGATTTTGAAATTAAGAAATAGGCTAAAAGGGAGATGGGTTTTCATATACTACGTGTCATCTGGGGTTGGGTTTAATTTTTATAGAACAAATTTGAGGTTTTATGTGAGTTTCTGATATGTGGTACTTTAGCCGAGTGTCTTTCGGAAACAATCTCTCTACCTCCGGAAGGTAGGGTCAGGTTGACATGCACTCTAACCTCTGGGTATGTTGTCGTTTTATGTGAGTTCTAAAGAGGAGGGCATTAACATAGACATTGATTGCTGATTTGGGTTATTACAGTTGGTTAGTTTCATTGCAGTTCTACTAACCACAGGTTATTTTCTCTAAAATGTACCACTTGTTTCCTTTTTTTGCCACAATTTGTATTATATTGAATTTTGAACTAAGAGGTCAAAAGGGAGATGATTTTTCATCACTTTGCCATCTGGGGTTGGCTATGATTTTGTAGAATTAATTGAGGTTACTTAGACTTGTTTTATGTGAGTTCTTAGAAGAGGAGGGCTTTGACATAGACATTGATTGTTGATTTGTGTTACTACAGTTGGATAGGTTCATTCCTAATCGTTCGGCAATGGATATGGACTATGCACATTACATGTTGACAGAGGGAAGGAAAGGTAAGGAAAATCCAGCTGTTGATTCTCCCTCCAGAGAGGCATACAGGAAGCAGCTTGCGGAAACATTCAACATGAACAGGTCCCGCATATTGGCGTTCAAGAACAAGCCACCCACTTCTGTTGAGGGTATTCCAAACGACTTCTCATCATCTGTTCACCAACAGGCGAAGACTGCTAAACCGCGTCGATACATTCCTCAGGTGAGTTTACTTAGGTTGTCTAAAGTGAGTATTACATTTCATGAGTTATTGTGCCAATTGTGCTTAACTTTTAAGTCCAAGATTTAGGCATATTGCTGTAAATAGTAACTGTTACTGAATCCCATCCTTATCAGTTTCATCGGTATATTTTTGCAGACCTCTGAAAGGACATTAGATGCTCCAGATCTAGTGGATGACTACTATTTGAATTTGTTAGATTGGGGCAGCAGCAAT</genome_strand>
        <mrna_strand>ATCTTCTTCTTCTCTCTCTTCTTAAGCGAACCCGCAA-GCGCACTTCCAACTTACTTGCTTTAATTTGTGCTGC--CA-TATTATTATTATTATAACCCTGATTTTTGTTTTGCAGGCTTTAATAATCTTGTTTC--TTTGTGTATTGAAATCTCTGTTTTTGTATCTCTTTTTTTTTTGTGCTAACACCATGGATGCAGGATCATTGAGTTCTGTCTCAGCAAGTAAGACCAAATCTCGTTGCCCTCTCCAGGAACAATATCTACAAAAGAGGAATTCTCGGGAAAAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGATAGGTTCATTCCTAATCGATCGGCAATGGATATGGACTATGCACATTACATGTTGACAGAGGGAAGGAAAGGTAAGGAAAATCCAGCTGTTGATTCTCCCTCCAGAGAGGCATACAGGAAGCAGCTTGCGGAAACATTCAACATGAACAGGACCCGAATATTGGCGTTCAAGAACAAGCCACCAACTTCTGTTGAGGCTATTCCAAATGACTTCTCATCATCTGTTCACCAACAGGCGAAGACTGCTAAACCCCGTCGATACATTCCTCAG............................................................................................................................................................ACCTCTGAAAGGACATTAGATGCTCCAGATCTAGTGGATGACTACTATTTGAATTTGTTAGATTGGGGCAGCAGCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E469032" ref_strand="+" ref_description="SGN-E469032 [cSTB-10-O13]">
      <seq>cgggtccctccatcttcttcttctctctcttcttaagcgaacccgcaagcgcacttccatcttacttgctttaatttgtgctgcaatattattattattataaccctgatttttgttttgcaggctttaataatcttgtttctttgtttattgaaatctctgtttttgtatctcttttttttttgtgctaacaccatggatgcaggatcattgagttctgtctcagcaagtaagaccaaatctcgttgccctctccaggaacaatatctacaaaagaggaattctcgggaaaatttggataggttcattcctaatcgatcggcaatggatatggactatgcacattacatgttgacagagggaaggaaaggtaaggaaaatccagctgttgattctccctccagagaagcatacaggaagcagcttgcggaaacattcaacatgaacaggacccgaatattggcgttcaagaacaagccacccacttctgttgaggctattccaaacgacttctcatcatctgttcaccagcaggcaaagactgctaaaccccgtcgatacattcctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0113N10.1" temp_strand="-" temp_description="C06SLm0113N10.1  AC219227.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0113N10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="25024" stop="23225"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24724" g_stop="24428" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="294" r_length="294" r_score="0.886"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24427" i_stop="23799" i_length="629">
            <donor d_prob="0.983" d_score="0.94"/>
            <acceptor a_prob="0.949" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23798" g_stop="23525" g_length="274"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="568" r_length="274" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0113N10.1" gen_strand="-" ref_id="SGN-E469032" ref_strand="+">
        <total_alignment_score>0.926</total_alignment_score>
        <cumulative_length_of_scored_exons>571</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0113N10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E469032" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24724" e_stop="24428"/>
          <exon e_start="23798" e_stop="23525"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGGT-CCTCTATCTTCTTCTTCTCTCTCTTCTCAAGCAAATCCGCAACGCGCACTTCCATTTTACTTGCTTTAATTTGTTCTTCAGTATTGTTATTGTTATTATAACTCTGATCTTCGTTTTGCAGGCTGTAATATTCTTGTTTCGTTTTTTTTATTGTGATCTCTGGTTTTGTA--TCTTTTTTTTTTGTGCTAACACCATGGATGCAGGATCATTGAGTTCTGTCTCAGCAAGTAAGAACAAATCTCGTTGCCCTCTTCAGGAACAATATCTACAAAAGAGAAATTCTCGGGATAATGTAAGTTGGTTCTCTACTTGCTTCCGATTATGGACTCTAGAAAGTACTAATTGTTTCAATTTATTGGTATAATCTGTGTTACACTTGGATTTTGAAATTAAGAAATAGGCTAAAAGGGAGATGGGTTTTCATATACTACGTGTCATCTGGGGTTGGGTTTAATTTTTATAGAACAAATTTGAGGTTTTATGTGAGTTTCTGATATGTGGTACTTTAGCCGAGTGTCTTTCGGAAACAATCTCTCTACCTCCGGAAGGTAGGGTCAGGTTGACATGCACTCTAACCTCTGGGTATGTTGTCGTTTTATGTGAGTTCTAAAGAGGAGGGCATTAACATAGACATTGATTGCTGATTTGGGTTATTACAGTTGGTTAGTTTCATTGCAGTTCTACTAACCACAGGTTATTTTCTCTAAAATGTACCACTTGTTTCCTTTTTTTGCCACAATTTGTATTATATTGAATTTTGAACTAAGAGGTCAAAAGGGAGATGATTTTTCATCACTTTGCCATCTGGGGTTGGCTATGATTTTGTAGAATTAATTGAGGTTACTTAGACTTGTTTTATGTGAGTTCTTAGAAGAGGAGGGCTTTGACATAGACATTGATTGTTGATTTGTGTTACTACAGTTGGATAGGTTCATTCCTAATCGTTCGGCAATGGATATGGACTATGCACATTACATGTTGACAGAGGGAAGGAAAGGTAAGGAAAATCCAGCTGTTGATTCTCCCTCCAGAGAGGCATACAGGAAGCAGCTTGCGGAAACATTCAACATGAACAGGTCCCGCATATTGGCGTTCAAGAACAAGCCACCCACTTCTGTTGAGGGTATTCCAAACGACTTCTCATCATCTGTTCACCAACAGGCGAAGACTGCTAAACCGCGTCGATACATTCCTC</genome_strand>
        <mrna_strand>CGGGTCCCTCCATCTTCTTCTTCTCTCTCTTCTTAAGCGAACCCGCAA-GCGCACTTCCATCTTACTTGCTTTAATTTGTGCTGCA--A-TATTATTATTATTATAACCCTGATTTTTGTTTTGCAGGCTTTAATAATCTTGTTTC--TTTGTTTATTGAAATCTCTGTTTTTGTATCTCTTTTTTTTTTGTGCTAACACCATGGATGCAGGATCATTGAGTTCTGTCTCAGCAAGTAAGACCAAATCTCGTTGCCCTCTCCAGGAACAATATCTACAAAAGAGGAATTCTCGGGAAAAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGATAGGTTCATTCCTAATCGATCGGCAATGGATATGGACTATGCACATTACATGTTGACAGAGGGAAGGAAAGGTAAGGAAAATCCAGCTGTTGATTCTCCCTCCAGAGAAGCATACAGGAAGCAGCTTGCGGAAACATTCAACATGAACAGGACCCGAATATTGGCGTTCAAGAACAAGCCACCCACTTCTGTTGAGGCTATTCCAAACGACTTCTCATCATCTGTTCACCAGCAGGCAAAGACTGCTAAACCCCGTCGATACATTCCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E437937" ref_strand="+" ref_description="SGN-E437937 [cSTA-5-H9]">
      <seq>cttaagcgaacccgcaagcgcacttccaacttacttgctttaatttgtgctgccatattattattattataaccctgatttttgttttgcagactttaataatcttgtttctttgtttattgaaatctctgtttttgtatctctttttttttgtgctaacaccatggatgcaggatcattgagttctgtctcagcaagtaagaccaaatctcgttgccctctccaggaacaatatctacaaaagaggaattctcgggaaaatttggataggttcattcctaatcgatcggcaatggatatggactatgcacattacatgttgacagagggaaggaaaggtaaggaaaatccagctgttgattctccctccagagaggcatacaggaagcagcttgcggaaacattcaacatgaacaggacccgaatattggcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0113N10.1" temp_strand="-" temp_description="C06SLm0113N10.1  AC219227.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0113N10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="24994" stop="23328"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24694" g_stop="24428" g_length="267"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="262" r_length="262" r_score="0.880"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24427" i_stop="23799" i_length="629">
            <donor d_prob="0.983" d_score="0.94"/>
            <acceptor a_prob="0.949" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23798" g_stop="23628" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="433" r_length="171" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0113N10.1" gen_strand="-" ref_id="SGN-E437937" ref_strand="+">
        <total_alignment_score>0.920</total_alignment_score>
        <cumulative_length_of_scored_exons>438</cumulative_length_of_scored_exons>
        <coverage percentage="1.012" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0113N10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E437937" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24694" e_stop="24428"/>
          <exon e_start="23798" e_stop="23628"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAAGCAAATCCGCAACGCGCACTTCCATTTTACTTGCTTTAATTTGTTCTTCAGTATTGTTATTGTTATTATAACTCTGATCTTCGTTTTGCAGGCTGTAATATTCTTGTTTCGTTTTTTTTATTGTGATCTCTGGTTTTGTATCT-TTTTTTTTTGTGCTAACACCATGGATGCAGGATCATTGAGTTCTGTCTCAGCAAGTAAGAACAAATCTCGTTGCCCTCTTCAGGAACAATATCTACAAAAGAGAAATTCTCGGGATAATGTAAGTTGGTTCTCTACTTGCTTCCGATTATGGACTCTAGAAAGTACTAATTGTTTCAATTTATTGGTATAATCTGTGTTACACTTGGATTTTGAAATTAAGAAATAGGCTAAAAGGGAGATGGGTTTTCATATACTACGTGTCATCTGGGGTTGGGTTTAATTTTTATAGAACAAATTTGAGGTTTTATGTGAGTTTCTGATATGTGGTACTTTAGCCGAGTGTCTTTCGGAAACAATCTCTCTACCTCCGGAAGGTAGGGTCAGGTTGACATGCACTCTAACCTCTGGGTATGTTGTCGTTTTATGTGAGTTCTAAAGAGGAGGGCATTAACATAGACATTGATTGCTGATTTGGGTTATTACAGTTGGTTAGTTTCATTGCAGTTCTACTAACCACAGGTTATTTTCTCTAAAATGTACCACTTGTTTCCTTTTTTTGCCACAATTTGTATTATATTGAATTTTGAACTAAGAGGTCAAAAGGGAGATGATTTTTCATCACTTTGCCATCTGGGGTTGGCTATGATTTTGTAGAATTAATTGAGGTTACTTAGACTTGTTTTATGTGAGTTCTTAGAAGAGGAGGGCTTTGACATAGACATTGATTGTTGATTTGTGTTACTACAGTTGGATAGGTTCATTCCTAATCGTTCGGCAATGGATATGGACTATGCACATTACATGTTGACAGAGGGAAGGAAAGGTAAGGAAAATCCAGCTGTTGATTCTCCCTCCAGAGAGGCATACAGGAAGCAGCTTGCGGAAACATTCAACATGAACAGGTCCCGCATATTGGCG</genome_strand>
        <mrna_strand>CTTAAGCGAACCCGCAA-GCGCACTTCCAACTTACTTGCTTTAATTTGTGCTGCCATA---TTATTATTATTATAACCCTGATTTTTGTTTTGCAGACTTTAATAATCTTGTTTC-TTTGTTT-ATTGAAATCTCTGTTTTTGTATCTCTTTTTTTTTGTGCTAACACCATGGATGCAGGATCATTGAGTTCTGTCTCAGCAAGTAAGACCAAATCTCGTTGCCCTCTCCAGGAACAATATCTACAAAAGAGGAATTCTCGGGAAAAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGATAGGTTCATTCCTAATCGATCGGCAATGGATATGGACTATGCACATTACATGTTGACAGAGGGAAGGAAAGGTAAGGAAAATCCAGCTGTTGATTCTCCCTCCAGAGAGGCATACAGGAAGCAGCTTGCGGAAACATTCAACATGAACAGGACCCGAATATTGGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E337213" ref_strand="+" ref_description="SGN-E337213 [cTOE-7-K7]">
      <seq>tttgcaggacacaactcgggtcctctatcttcttcttctctctcttctcaagcaaatccgcaacgcgcacttccattttacttgctttaatttgttcttcagtattgttattgttattataactctgatcttcgttttgcaggctgtaatattcttgtttcgttttttttattgtgatctctggttttgtatcttttttttttgtgctaacaccatggatgcaggatcattgagttctgtctcagcaagtaagaacaaatctcgttgccctcttcaggaacaatatctacaaaagagaaattctcgggataatttggataggttcattcctaatcgttcggcaatggatatggactatgcacattacatgttgacagagggaaggaaaggtaaggaaaatccagctgttgattctccctccagagaggcatacaagaagcagcttgcggaaacattcaacatgaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0113N10.1" temp_strand="-" temp_description="C06SLm0113N10.1  AC219227.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0113N10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="25040" stop="23345"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24740" g_stop="24428" g_length="313"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="313" r_length="313" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24427" i_stop="23799" i_length="629">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23798" g_stop="23645" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="467" r_length="154" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0113N10.1" gen_strand="-" ref_id="SGN-E337213" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>467</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0113N10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E337213" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24740" e_stop="24428"/>
          <exon e_start="23798" e_stop="23645"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGCAGGACACAACTCGGGTCCTCTATCTTCTTCTTCTCTCTCTTCTCAAGCAAATCCGCAACGCGCACTTCCATTTTACTTGCTTTAATTTGTTCTTCAGTATTGTTATTGTTATTATAACTCTGATCTTCGTTTTGCAGGCTGTAATATTCTTGTTTCGTTTTTTTTATTGTGATCTCTGGTTTTGTATCTTTTTTTTTTGTGCTAACACCATGGATGCAGGATCATTGAGTTCTGTCTCAGCAAGTAAGAACAAATCTCGTTGCCCTCTTCAGGAACAATATCTACAAAAGAGAAATTCTCGGGATAATGTAAGTTGGTTCTCTACTTGCTTCCGATTATGGACTCTAGAAAGTACTAATTGTTTCAATTTATTGGTATAATCTGTGTTACACTTGGATTTTGAAATTAAGAAATAGGCTAAAAGGGAGATGGGTTTTCATATACTACGTGTCATCTGGGGTTGGGTTTAATTTTTATAGAACAAATTTGAGGTTTTATGTGAGTTTCTGATATGTGGTACTTTAGCCGAGTGTCTTTCGGAAACAATCTCTCTACCTCCGGAAGGTAGGGTCAGGTTGACATGCACTCTAACCTCTGGGTATGTTGTCGTTTTATGTGAGTTCTAAAGAGGAGGGCATTAACATAGACATTGATTGCTGATTTGGGTTATTACAGTTGGTTAGTTTCATTGCAGTTCTACTAACCACAGGTTATTTTCTCTAAAATGTACCACTTGTTTCCTTTTTTTGCCACAATTTGTATTATATTGAATTTTGAACTAAGAGGTCAAAAGGGAGATGATTTTTCATCACTTTGCCATCTGGGGTTGGCTATGATTTTGTAGAATTAATTGAGGTTACTTAGACTTGTTTTATGTGAGTTCTTAGAAGAGGAGGGCTTTGACATAGACATTGATTGTTGATTTGTGTTACTACAGTTGGATAGGTTCATTCCTAATCGTTCGGCAATGGATATGGACTATGCACATTACATGTTGACAGAGGGAAGGAAAGGTAAGGAAAATCCAGCTGTTGATTCTCCCTCCAGAGAGGCATACAGGAAGCAGCTTGCGGAAACATTCAACATGAACA</genome_strand>
        <mrna_strand>TTTGCAGGACACAACTCGGGTCCTCTATCTTCTTCTTCTCTCTCTTCTCAAGCAAATCCGCAACGCGCACTTCCATTTTACTTGCTTTAATTTGTTCTTCAGTATTGTTATTGTTATTATAACTCTGATCTTCGTTTTGCAGGCTGTAATATTCTTGTTTCGTTTTTTTTATTGTGATCTCTGGTTTTGTATCTTTTTTTTTTGTGCTAACACCATGGATGCAGGATCATTGAGTTCTGTCTCAGCAAGTAAGAACAAATCTCGTTGCCCTCTTCAGGAACAATATCTACAAAAGAGAAATTCTCGGGATAAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGATAGGTTCATTCCTAATCGTTCGGCAATGGATATGGACTATGCACATTACATGTTGACAGAGGGAAGGAAAGGTAAGGAAAATCCAGCTGTTGATTCTCCCTCCAGAGAGGCATACAAGAAGCAGCTTGCGGAAACATTCAACATGAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E438887" ref_strand="+" ref_description="SGN-E438887 [cSTA-10-I3]">
      <seq>cttctctctcttcttaagcgaacccgcaagcgcacccgcaagcgcacttccatcttacttgctttaatttgtgctgcaatattattattattataaccctgatttttgttttgcaggctttaataatcttgtttctttgtttattgaaatctctgtttttgtatctcttttttttgtgctaacaccatggatgcaggatcattgagttctgtctcagcaagtaagaccaaatctcgttgccctctccaggaacaatatctacaaaagaggaattctcgggaaaatttggataggttcattcctaatcgatcggcaatggatatggactatgcacattacatgttgacagagggaaggaaaggtaaggaaaatccagctgttgattctccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0113N10.1" temp_strand="-" temp_description="C06SLm0113N10.1  AC219227.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0113N10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="24994" stop="23394"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24676" g_stop="24428" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="285" r_length="244" r_score="0.904"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24427" i_stop="23799" i_length="629">
            <donor d_prob="0.983" d_score="0.94"/>
            <acceptor a_prob="0.949" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23798" g_stop="23694" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="390" r_length="105" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0113N10.1" gen_strand="-" ref_id="SGN-E438887" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>354</cumulative_length_of_scored_exons>
        <coverage percentage="0.908" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0113N10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E438887" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24676" e_stop="24428"/>
          <exon e_start="23798" e_stop="23694"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGCACTTCCATTTTACTTGCTTTAATTTGTTCTTCAGTATTGTTATTGTTATTATAACTCTGATCTTCGTTTTGCAGGCTGTAATATTCTTGTTTCGTTTTTTTTATTGTGATCTCTGGTTTTGTATCTTTTTTTTTTGTGCTAACACCATGGATGCAGGATCATTGAGTTCTGTCTCAGCAAGTAAGAACAAATCTCGTTGCCCTCTTCAGGAACAATATCTACAAAAGAGAAATTCTCGGGATAATGTAAGTTGGTTCTCTACTTGCTTCCGATTATGGACTCTAGAAAGTACTAATTGTTTCAATTTATTGGTATAATCTGTGTTACACTTGGATTTTGAAATTAAGAAATAGGCTAAAAGGGAGATGGGTTTTCATATACTACGTGTCATCTGGGGTTGGGTTTAATTTTTATAGAACAAATTTGAGGTTTTATGTGAGTTTCTGATATGTGGTACTTTAGCCGAGTGTCTTTCGGAAACAATCTCTCTACCTCCGGAAGGTAGGGTCAGGTTGACATGCACTCTAACCTCTGGGTATGTTGTCGTTTTATGTGAGTTCTAAAGAGGAGGGCATTAACATAGACATTGATTGCTGATTTGGGTTATTACAGTTGGTTAGTTTCATTGCAGTTCTACTAACCACAGGTTATTTTCTCTAAAATGTACCACTTGTTTCCTTTTTTTGCCACAATTTGTATTATATTGAATTTTGAACTAAGAGGTCAAAAGGGAGATGATTTTTCATCACTTTGCCATCTGGGGTTGGCTATGATTTTGTAGAATTAATTGAGGTTACTTAGACTTGTTTTATGTGAGTTCTTAGAAGAGGAGGGCTTTGACATAGACATTGATTGTTGATTTGTGTTACTACAGTTGGATAGGTTCATTCCTAATCGTTCGGCAATGGATATGGACTATGCACATTACATGTTGACAGAGGGAAGGAAAGGTAAGGAAAATCCAGCTGTTGATTCTCCC</genome_strand>
        <mrna_strand>GCGCACTTCCATCTTACTTGCTTTAATTTGTGCTGCAATA---TTATTATTATTATAACCCTGATTTTTGTTTTGCAGGCTTTAATAATCTTGTTTC--TTTGTTTATTGAAATCTCTGTTTTTGTATCTCTTTTTTTTGTGCTAACACCATGGATGCAGGATCATTGAGTTCTGTCTCAGCAAGTAAGACCAAATCTCGTTGCCCTCTCCAGGAACAATATCTACAAAAGAGGAATTCTCGGGAAAAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGATAGGTTCATTCCTAATCGATCGGCAATGGATATGGACTATGCACATTACATGTTGACAGAGGGAAGGAAAGGTAAGGAAAATCCAGCTGTTGATTCTCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E324919" ref_strand="+" ref_description="SGN-E324919 [cTOC-11-P24]">
      <seq>ccgcaacgcgcacttccattttacttgctttaatttgttcttcagtattgttattgttattataactctgatcttcgttttgcaggctgtaatattcttgtttcgttttttttattgtgatctctggttttgtatcttttttttttgtgctaacaccatggatgcaggatcattgagttctgtctcagcacgtaagaacaaatctcgttgccctcttcaggaacaatatctacaaaagagaaattctcgggataatttggataggttcattcctaatcgttcggcaatggatatggactatgcacattacatgttgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0113N10.1" temp_strand="-" temp_description="C06SLm0113N10.1  AC219227.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0113N10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="24983" stop="23437"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24683" g_stop="24428" g_length="256"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="256" r_length="256" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24427" i_stop="23799" i_length="629">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23798" g_stop="23737" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="318" r_length="62" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0113N10.1" gen_strand="-" ref_id="SGN-E324919" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>318</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0113N10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E324919" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24683" e_stop="24428"/>
          <exon e_start="23798" e_stop="23737"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGCAACGCGCACTTCCATTTTACTTGCTTTAATTTGTTCTTCAGTATTGTTATTGTTATTATAACTCTGATCTTCGTTTTGCAGGCTGTAATATTCTTGTTTCGTTTTTTTTATTGTGATCTCTGGTTTTGTATCTTTTTTTTTTGTGCTAACACCATGGATGCAGGATCATTGAGTTCTGTCTCAGCAAGTAAGAACAAATCTCGTTGCCCTCTTCAGGAACAATATCTACAAAAGAGAAATTCTCGGGATAATGTAAGTTGGTTCTCTACTTGCTTCCGATTATGGACTCTAGAAAGTACTAATTGTTTCAATTTATTGGTATAATCTGTGTTACACTTGGATTTTGAAATTAAGAAATAGGCTAAAAGGGAGATGGGTTTTCATATACTACGTGTCATCTGGGGTTGGGTTTAATTTTTATAGAACAAATTTGAGGTTTTATGTGAGTTTCTGATATGTGGTACTTTAGCCGAGTGTCTTTCGGAAACAATCTCTCTACCTCCGGAAGGTAGGGTCAGGTTGACATGCACTCTAACCTCTGGGTATGTTGTCGTTTTATGTGAGTTCTAAAGAGGAGGGCATTAACATAGACATTGATTGCTGATTTGGGTTATTACAGTTGGTTAGTTTCATTGCAGTTCTACTAACCACAGGTTATTTTCTCTAAAATGTACCACTTGTTTCCTTTTTTTGCCACAATTTGTATTATATTGAATTTTGAACTAAGAGGTCAAAAGGGAGATGATTTTTCATCACTTTGCCATCTGGGGTTGGCTATGATTTTGTAGAATTAATTGAGGTTACTTAGACTTGTTTTATGTGAGTTCTTAGAAGAGGAGGGCTTTGACATAGACATTGATTGTTGATTTGTGTTACTACAGTTGGATAGGTTCATTCCTAATCGTTCGGCAATGGATATGGACTATGCACATTACATGTTGAC</genome_strand>
        <mrna_strand>CCGCAACGCGCACTTCCATTTTACTTGCTTTAATTTGTTCTTCAGTATTGTTATTGTTATTATAACTCTGATCTTCGTTTTGCAGGCTGTAATATTCTTGTTTCGTTTTTTTTATTGTGATCTCTGGTTTTGTATCTTTTTTTTTTGTGCTAACACCATGGATGCAGGATCATTGAGTTCTGTCTCAGCACGTAAGAACAAATCTCGTTGCCCTCTTCAGGAACAATATCTACAAAAGAGAAATTCTCGGGATAAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGATAGGTTCATTCCTAATCGTTCGGCAATGGATATGGACTATGCACATTACATGTTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E704883" ref_strand="+" ref_description="SGN-E704883 [FA25CB10]">
      <seq>aattttgaccggaaaccctatccctagccccaaattttcgacctagcttttcccatttgccaatctgcaattccaattcttcgtttattttctggaaactcagcaatcaaaacccccaatcattttcacctggcgtcgagaatgtagaaccaattattttagcatttgatagatatatttgtgtgttaatatacaaaattatagttatagagagatggggagctctgaaacagaattaggaacgggggattgtggagttgggagtattgtttgggtccgaaggcgaaatggatcgtggtggccaggtaaaatactatgtcctgatgagttttcagcttcccatttgatgtctccacgatctgggactccagtgaagcttcttgggagagaagatgccactgtatggtgcggcatctatagaactagaaccaaaatatataggaagatctgaagcacaacctgaacgtgggagtatcagcagtgaagaactggatgaagtgacacttactgatgacacttcttctcatgcttatcaccagaaatctatttctgctggctttggggtgtccaaatggcaactaaaagggaaaaggactaatccaagtcttaacaggaggcctctggatccttttgatggaaaccttgcgagtttcaagggaaagaggggttatgtatgtcttcaagatgacccccttacgagatcttgggcgcaaaatgctagatatggatcaagagctccacgtcctgctagtcaaaacatgttcaattgtgtggattgggcttgggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0113N10.1" temp_strand="-" temp_description="C06SLm0113N10.1  AC219227.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0113N10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="33026" stop="26425"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32726" g_stop="32325" g_length="402"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="402" r_length="402" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32324" i_stop="27111" i_length="5214">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.821" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27110" g_stop="26725" g_length="386"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="788" r_length="386" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0113N10.1" gen_strand="-" ref_id="SGN-E704883" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>788</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0113N10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E704883" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32726" e_stop="32325"/>
          <exon e_start="27110" e_stop="26725"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTTGACCGGAAACCCTATCCCTAGCCCCAAATTTTCGACCTAGCTTTTCCCATTTGCCAATCTGCAATTCCAATTCTTCGTTTATTTTCTGGAAACTCAGCAATCAAAACCCCCAATCATTTTCACCTGGCGTCGAGAATGTAGAACCAATTATTTTAGCATTTGATAGATATATTTGTGTGTTAATATACAAAATTATAGTTATAGAGAGATGGGGAGCTCTGAAACAGAATTAGGAACGGGGGATTGTGGAGTTGGGAGTATTGTTTGGGTCCGAAGGCGAAATGGATCGTGGTGGCCAGGTAAAATACTATGTCCTGATGAGTTTTCAGCTTCCCATTTGATGTCTCCACGATCTGGGACTCCAGTGAAGCTTCTTGGGAGAGAAGATGCCACTGTGTAAGTCCCTTTTTTACACTTGAATTTATCTTAAAATGGATGATGATTTTGACACAAGATAAATGTTGCATGTTGAAATTCAGCTGTAATAATGGTAAAACTCGATTATTATTGTCTTGCATGTTATTGATGCATTCTTAGTTGCAGGAAACTTGGAGTATTTTTTATAACATTGATAACACTATAATTAAATGAATTTCCAGTGAGTTTGCATTGTGATATTTCAGTTGAAATGGGGGTTGGAAGTGGGGTGCAATTAGATAAACTATTGCAAAAGTATTTCTGGACTTAATATGTCACTATAATTTGACAGTGAATAGTTTAGGATTCATAGTTAGAAGCAGAGGCGGATCCAGGATTTGAATGTTGTGGGTGTCACAAACTCATCACTAGTGATTGACATTGAATTAGGGACATATTCAATTAGTTCAATCCATTTTGGGCTAATTCAAATCGTTTAACTAGATTTTTGGTTCATAAGTAATACACGGTCATCTAACCAAAATAAATTTTGTACAATTCGATCTAATTCTTGGTCAAATACTATTGAACAAAAATGAGAAACTTAAACAAGAAAATCAAAATCTTGAACACACAATTAGACCCCTTCAATTCAAACATAATGTACGTAAAACATGATATCTACTAATTGTAACTCATGATGAGTTATATAAAAAAACAAAAGCCAAAGCAGCTATGAAAATTAACAAATTATCTATACAAATATAATAAAAAAATTAATTTTCAAAACAAAAATAAAAACTCTTGACGAAGTGCATAAAACAATCAATGATCTATCACATATCGGCCCTTGCATCCTCTGTCTTTGTTCAAAATAGTAAGAAAGGAAAAATAAAATTTAACGAATAAAATGTACTTTGGAGTAATAAAGAGGAAAAAGATTAAAATCACATTCAAGAGTAATAAAGAGGAAAAAGATTAAAATCACATTCAATTAAATATTTGGAGATCTTCAAAAAGAAAATTACGAGATAATTTTAGATAAATAAACTATCAGATGAGGATTTTTTGGACGGAGTTGAAATACAAATTGAAGAATATATGGAAATTAGGAAAAGAAGAGAAGTAAAGAAAAAGGAAAAAGGGAAATAGACAAAATGGATGGCTAGAGGCAGTGATTTGAGAAAGGAAAAAATTTAAATAAACAGATGTGTTAAAGGGGATTCGAACCTACACCTAGCGCCCGGCACCCTTGCCATTGACCAATGGATCAGAGATGATAATGCTACTACGGATTCCAACCTTTTGTATATACCATAACTCACTAAATTCCTGTGTATATGAAAATTTTAGCGGAGTGTTCGGGTGTCGTGGCACCTCACGCTACCACATAGATCCGCCCCTCGTTTGAAGTATGGACTCTTTACCATCAGTCATTATGAAGGAAGAAAATGGAAATGAGAGTCTCTTAATTGTGTGCTGATTAGCTCATGTTTCTTGTTAGATCAACATCTACAGGCTTATCGTAAAAGCTTATCTTGCGCTAAGTTGGAGAATAGTAATCGAGAATTCCCTGGTCTTGTAGGTGAAGATTATTGAGTTTAGAAGGTAAGTGCTGCTATCGGCTTAGTTGCGCGGACTCTTCACTTTTGATACCGCACCCGTGTCGGATTCGCCAAAAGTACACTACTTTTGGTGAATCTGACGTGCACCCCTTGACATTTTTGAAGAGTCCGAAAAACATAGGCTATGGGTCAAGGTAATGCAGCCTGGCTTAGGAGATTAGGACTCTTTTCATATTGGTTGAAATTCCTTTTTCTCCTTTAACTGTAAAAAGAGGAAAATACATAATGATAATAGAGATGCACCGCACCTTGAAAGCTATTTGTGGAATAGCATTGTATTGTGTCATTCCACCTCTTTCCTTAGAGGGTAAGATTGAGTTTAACCTAACCACTGGAGACTTGAGAGGAATATTATATTATATGCATTATAGTAAGTCTAGTTCATGACATTACACTATTAAAGAACAAAAAATACACAGGAGAGGAAAAAAAGAAAGAGGAAAATGTTCATTAGTTGATTCTATGGAATTGGCAGAGGGAGCTTTGGCTAAAACCTGTTGGAAACAAGGTTTCATAATGTCATCGAAAAGTTAACGAAGTTGAGGCAAGATTTTGATTCATCCTCTTGAGAGTTTTACTAGGGGATAGTCAAGCCGATGCTTGTGGATTCAGTGCCTGGATCAATCAGAAAAATGTTGCAGAATTGCAAGTGTTTAACACATACCGAAAAGGTACTAACTACTAACTAAGCCAACCATTAATTTTAGTTAATGCACCATGAATGGTCTGATGCCGCTAGCAAAGTTCTTACGTCGAGTGCTCACTCATGAGAAGACTCGAGATAGAAGTCTGGGAATGACACTTAATGAAGCAAGAACTCTGTGAACTCCAGCAGAGTTCTAACTCTTTACCTTTGTCCAATGCTGGACAACTTGTGATGAAGAGTATCTCTGTACGAGGATTTCCCTTCTCCATGTATCAATCCACATAGGGAGTACAAAATTTGGGGCTTCAAACCCTCTTTTGTTTGTTTCTTCTATTTGAGTAGGAGTCTTCTTTTAGTGTGGATCAGTGTTAAAAAATCTGTTTGGAACTAGTGGAATGGCATTATTTTGTTGGAATAAACTACTGGTTAGTTATCTAAGGCAGTAGGGCCAGTATGGTCTCTTTGAATGGGAACCTTTTCAAATCGTCACCTGCATGTGGTGAGCATCTAAGTTAAATGAAAAGCAAAATGAGGAAGCAAAGATGCTTGATTCTATTTCTTGCTAAGTGCTGCTCCCGTCTCTCTCATTCTTGATAAATAGAAATGCTACTTATAGCTGGTGGAATGCTGTATCTTCATAAGTCTATTCCACCTGTCTTAATTAAACTTTGTTTACTAGGTTCAGACACTTCATAGTCTTAGTATGGTATGTTATGGTGTTTCTCTGTGTGTATCTTACCAGGGATTGGTATAATTTGGAGAAGTCAAAGCGAGTGAAAGCATTCAGGTGTGGCGAATTTGATGATTTTATTCAACGGGCAGAAGCATCCCTAGGTCTGCCTCCGAAGAAAAGAGAGAAGTATGCACGACGTGAAGATGCAATACTTCATGCTCTTGAACTTGAGAGGCAGTTAGGTAAAACATGTGGGAGTTTAGGTTGTTCATCCACTGAGAGAACCAATAAATCTACTTATGCTTTTTCCGGAAGAGAGTCACGAACATCATCAAAATACTTGGGAAATGGGAATGAGAGACGTTTAAGATCTAAATCTCATAAACTTTCTCATAAATCTGGTTTCTTCCTTGAGGGAAAGAATACACGCAACTTATCTTCTATGCAGGAATCCAAAGATCAGAATAAGTTTAGTGGGGACGATGAGAATTCCGATGTACCTCTGAGGATGAGAGGTTTACAGGATTTGGGCCTCAGTACTGTTCCTTCAGACCATGCTGTTTCTAATGGTATTTATAATTCAGAATGCCTAGTTAATACTAAGAGAAAAAATTTGTCAGTCAAAAGGAAATTATCAGATGAAGGCTTAGCCGAAAAAATTATTGTCAAGAGGCGTGATAGGAGCTGCCTTCTTGCTCAAGGTTTGAAGAGTTCTGAAAATTTACCTGACTCAGGTTCTGTTTGCATCTCTGAGACGGGAGATGAGCAGCCAGGAGTTGCAAAGAAAAGCAGGTGTAATTTGGCCGAAGAACCTACAGTATTTTTGACTGTTGAAGAGAATAATCATGCACAGATGGAACTTTCAACATTGAAGCGTGAAGATAATGGTTCTCATCCTGCTGAATTATGTGAACAGAATGCTTCTGGGTCTGCAGAATATACTGAAAGTGGTTCTTCTGATACAGATTCTGCGGAAGATACTGATGATGAGTTGGCCACAATCTCAGGTTTCTCCCTTTTCACTCTTGTACAAGCCACCTTAATGTACATTCTTTTTCTAGACAAAACGAAGCAGCATCAAAAGTACAAAATCTTTTGTGGTTGCGCTATAATGCCTCTAAACTTTGGAACTTTGAGATCTTTGGAGCTGATTGAATAAACTTAATTATTCTAATCCCTCACTCTCTATGCTTGTGTGTTCTACTATCCCCATGTGAACCAATTCATTCCGTGGTTCTCCTTCTTGCGGTTCACATGGTATGCCTTGGTACGTTGTTCAGTCCTCTAAGTTTGTATTGGGACTTTTAGGAGTGAAGCTATCAGAAAGTGGCTGCATCTGGTTACTTCACCAACATTCTGTATCATTCTGTATCACCTTGAGCAAGTTCAAAGTAGTCTAGGCTCCTAGCATGTCGAAGTTCAGTTAAGAACTTCCATGGTTATTGTAGAAACTTGCTGCGGTGGGATTTTTTTCTTATTATGTCAAAAGAAAGAGTTTGGTATTTGGTCTTAAATACCCTCTCATGTTTGGAGTTTCGATGTGCTAGATTACTAGTAGTTTCAGTTAAAAGGAAACTGGAAGCATCCAAAACCAATGCTTAGGTCCCCCTTTTCTCAAAAACGTCTCAAGAGGTTGTAAAATATCTCCTAATCTCCCCCCCACCCCCCACCCCGCGGCGTTCCCCCCCTTCTGATACTGTAGGTGTACGAGTCAGCTTACTTGTACCTCACCTATACCACCTTTTATGTCTCAATTTAATATTTGTTTCTCCTGACTGAGGAGCGAGGTGTTGTAATTTTAGTGAGGAAAACTATAACTTGCTTTGTTCTGAGTTGGATTTTGTTGCTAATTTGGTGACTTGTAGAGTTTCTTTCAGAGATGTAATCAGGTTCTAAATCAAAGAACTTAAGCAATTCCAAAGGAAAATCACATTTGAGTGACAACTGACTAGTAGGCATGATCATAAGTTAATTTTATTTCTTGATATCTCTTTTATAATACCAAGTCGGTATTCTTTCTAATTATCAAAGAAAAAGAAACTCTAGGGAATTGGTTCTCTGGAACTGTAATTTTTTTTTAGCATCTTAACTGCAGAATTATGTCTAATTCTGATTGTGCATGCAGATTCAAAAAAAATAATAGAATAGAGTCAAAAAGTTCTGGTTGTGAGTGCATAGTTCCTTATCACTCTTTTATTATTCATTTCTCTTGACATCATGAATCAGTTCTTCCATAAGGATTGCTCCTTTAAACAGAGAAGGTAAGACAATGATCTGCTTAAGGCTAACTTAGCTTGTTGCTAATGCAGATGGTGCGGCATCTATAGAACTAGAACCAAAATATATAGGAAGATCTGAAGCACAACCTGAACGTGGGAGTATCAGCAGTGAAGAACTGGATGAAGTGACACTTACTGATGACACTTCTTCTCATGCTTATCACCAGAAATCTATTTCTGCTGGCTTTGGGGTGTCCAAATGGCAACTAAAAGGGAAAAGGAATAATCGAAGTCTTAACAGGAGGCCTCTGGATCCTTTTGATGGAAACCTTGCGAGTTTCAAGGGAAAGAGGGGTTATGTATGTCTTCAAGATGACCCCCTTACGAGATCTTGGGCGCAAAATGCTAGATATGGATCAAGAGCTCCACGTCCTGCTAGTCAAAACATGTTCAATTGTGTGGATTGGGCTTGGGAT</genome_strand>
        <mrna_strand>AATTTTGACCGGAAACCCTATCCCTAGCCCCAAATTTTCGACCTAGCTTTTCCCATTTGCCAATCTGCAATTCCAATTCTTCGTTTATTTTCTGGAAACTCAGCAATCAAAACCCCCAATCATTTTCACCTGGCGTCGAGAATGTAGAACCAATTATTTTAGCATTTGATAGATATATTTGTGTGTTAATATACAAAATTATAGTTATAGAGAGATGGGGAGCTCTGAAACAGAATTAGGAACGGGGGATTGTGGAGTTGGGAGTATTGTTTGGGTCCGAAGGCGAAATGGATCGTGGTGGCCAGGTAAAATACTATGTCCTGATGAGTTTTCAGCTTCCCATTTGATGTCTCCACGATCTGGGACTCCAGTGAAGCTTCTTGGGAGAGAAGATGCCACTGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGTGCGGCATCTATAGAACTAGAACCAAAATATATAGGAAGATCTGAAGCACAACCTGAACGTGGGAGTATCAGCAGTGAAGAACTGGATGAAGTGACACTTACTGATGACACTTCTTCTCATGCTTATCACCAGAAATCTATTTCTGCTGGCTTTGGGGTGTCCAAATGGCAACTAAAAGGGAAAAGGACTAATCCAAGTCTTAACAGGAGGCCTCTGGATCCTTTTGATGGAAACCTTGCGAGTTTCAAGGGAAAGAGGGGTTATGTATGTCTTCAAGATGACCCCCTTACGAGATCTTGGGCGCAAAATGCTAGATATGGATCAAGAGCTCCACGTCCTGCTAGTCAAAACATGTTCAATTGTGTGGATTGGGCTTGGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E322780" ref_strand="+" ref_description="SGN-E322780 [cTOB-30-I7]">
      <seq>agaaatccctttcccccctcccccaaacaatcgtaaatcgatttcctgtttcattttagcagctgagatggatttccacagcctcgctaggagagaattgcaagctctttgcaagaagaacaagatcccagctaacataaccaatgttgccatggctgatgctcttcaatctcttgaatttgttgacggtattgaagaggtcttgaaaacatgtgaatctgatgttgccaactcatccatggaatcccctggaaagtcagaagcattagcaagtgtacctcggactggtcgccgaactacacaacgaaagactatcaaacatgactcagaaactatgcagaccacgacaaggagtcactgcagaacaagaggaacggtggtaagagacattgatgaagccaaaaaggatatgctggagactcctgcattggcaactaccagaaagagggctgcaacaacttcagttcgtgttaagctggaatctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0113N10.1" temp_strand="+" temp_description="C06SLm0113N10.1  AC219227.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0113N10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="34604" stop="36480"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34904" g_stop="35084" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="181" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35085" i_stop="35876" i_length="792">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.907" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35877" g_stop="36180" g_length="304"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="485" r_length="304" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0113N10.1" gen_strand="+" ref_id="SGN-E322780" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>485</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0113N10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E322780" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34904" e_stop="35084"/>
          <exon e_start="35877" e_stop="36180"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAATCCCTTTCCCCCCTCCCCCAAACAATCGTAAATCGATTTCCTGTTTCATTTTAGCAGCTGAGATGGATTTCCACAGCCTCGCTAGGAGAGAATTGCAAGCTCTTTGCAAGAAGAACAAGATCCCAGCTAACATAACCAATGTTGCCATGGCTGATGCTCTTCAATCTCTTGAATTTGTAAGTTTTCTTAAATCTAAATATGATAATTTTGTTCCTGTGTTGTAGAATTGATGAGTTTTATTTGAAATGAAAAATGAAATCTGTAGCATTTCTAATGGTTACAGTAGGAAGATGAGTTACCAGTATCTGCCAATATTTTTGTTGTTGGATCGATTTGGTTTACCTAATTTCACTTGCAGTTACCTCTCTTGAGTTTCTGAAATCAAAATGACTACTGAGTCTGTTTAAAATGGGAATAAACTATGCAGCATTTCAATTGGTTACACTAGGAAGAAGAATATCTGTATTTGATTCGATGTGCGAGTGTTTTGATTATTGGATCGATTTGTGAATCGGTTAAATCTTATTTCATTTGGAGTCAACTCTCTCGGGTTTGTCAGTTTTTTTCATTCAAAGCCATTGCTGAGTTTGCTTAAAATGACAAACAATAAGCAGCATCTCAAATGGTTACATAGAACGATGAATATCAATTACTGCTTCGATCTGCAATTTTAATTTTGGTTGGATCGGTATTTAAATCGTTTATTCATTTCACGTTCAGTCACCTTTATGGTACCAAGTCTTTTCCAGCTTATCAATCATCTTCAGACAATTTGAGAATGTGAGGAAGCTGTGGACTGTAATTTCTATACTAAAAAGTCATTCCTGCTTGTTGGATTGTGTGAACCACCTAATAATTCCCCAGCTGGATTTCTATAGCTGCTAATAACATATTTACTTAATGTTTAACCGATTAATACATTGACATTGCACATCAGAAACGAAATTCAGAAATGTTTCGATATGCAGGTTGACGGTATTGAAGAGGTCTTGAAAACATGTGAATCTGATGTTGCCAACTCATCCATGGAATCCCCTGGAAAGTCAGAAGCATTAGCAAGTGTACCTCGGACTGGTCGCCGAACTACACAACGAAAGACTATCAAACATGACTCAGAAACTATGCAGACCACGACAAGGAGTCACTGCAGAACAAGAGGAACGGTGGTAAGAGACATTGATGAAGCCAAAAAGGATATGCTGGAGACTCCTGCATTGCCAACTACCAGAAGGAGGGCTGCAACAACTTCAGTTCGTGTTAAGCTGGAATCTG</genome_strand>
        <mrna_strand>AGAAATCCCTTTCCCCCCTCCCCCAAACAATCGTAAATCGATTTCCTGTTTCATTTTAGCAGCTGAGATGGATTTCCACAGCCTCGCTAGGAGAGAATTGCAAGCTCTTTGCAAGAAGAACAAGATCCCAGCTAACATAACCAATGTTGCCATGGCTGATGCTCTTCAATCTCTTGAATTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGACGGTATTGAAGAGGTCTTGAAAACATGTGAATCTGATGTTGCCAACTCATCCATGGAATCCCCTGGAAAGTCAGAAGCATTAGCAAGTGTACCTCGGACTGGTCGCCGAACTACACAACGAAAGACTATCAAACATGACTCAGAAACTATGCAGACCACGACAAGGAGTCACTGCAGAACAAGAGGAACGGTGGTAAGAGACATTGATGAAGCCAAAAAGGATATGCTGGAGACTCCTGCATTGGCAACTACCAGAAAGAGGGCTGCAACAACTTCAGTTCGTGTTAAGCTGGAATCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E483222" ref_strand="+" ref_description="SGN-E483222 [cSTE-8-O20]">
      <seq>ctcccccaagcaatcgtagatcgatttcctgtttcagttcagcagcagagatggatttccacagcctcgcaaggagagaattgcaagctctttgcaagaagaacaagatcccagctaacttgaccaatgttgccatggctgatgctcttcaatctcttgaatttgttgatggtattgaagaggtcttgaaaacatgtgaatctgatgttgccaacccatccatggaatcccctggaaagtcagaagcattagcaagtgtacctcggactggtcgccgaactacacaacgaaagacaatcaaacatgactcagaaactttgcagaccacgacaaggagtcactgcagaacaagaggaacagtggtaagagacgttgatgaagcaaaaaatgatatgctggagactcctgcattgccaactaccagaaggagggctgcaacaacttcagttcgtgctaagctggaatctgcaatgaaggaatgtgaaccaaaagaggaaattgtggatcaggttgaggaagaaaggaaagacgttccaaagacaccagcagctgctctcactagccaaagaaaggaagtgaaggcaaagagttcagttaggcaagtgtacagcactcgtcgatcagtgaggttagctgggaaacctatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0113N10.1" temp_strand="+" temp_description="C06SLm0113N10.1  AC219227.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0113N10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="34621" stop="36659"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34921" g_stop="35084" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="164" r_length="164" r_score="0.951"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35085" i_stop="35876" i_length="792">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.907" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35877" g_stop="36359" g_length="483"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="647" r_length="483" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0113N10.1" gen_strand="+" ref_id="SGN-E483222" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>647</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0113N10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E483222" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34921" e_stop="35084"/>
          <exon e_start="35877" e_stop="36359"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCCCCAAACAATCGTAAATCGATTTCCTGTTTCATTTTAGCAGCTGAGATGGATTTCCACAGCCTCGCTAGGAGAGAATTGCAAGCTCTTTGCAAGAAGAACAAGATCCCAGCTAACATAACCAATGTTGCCATGGCTGATGCTCTTCAATCTCTTGAATTTGTAAGTTTTCTTAAATCTAAATATGATAATTTTGTTCCTGTGTTGTAGAATTGATGAGTTTTATTTGAAATGAAAAATGAAATCTGTAGCATTTCTAATGGTTACAGTAGGAAGATGAGTTACCAGTATCTGCCAATATTTTTGTTGTTGGATCGATTTGGTTTACCTAATTTCACTTGCAGTTACCTCTCTTGAGTTTCTGAAATCAAAATGACTACTGAGTCTGTTTAAAATGGGAATAAACTATGCAGCATTTCAATTGGTTACACTAGGAAGAAGAATATCTGTATTTGATTCGATGTGCGAGTGTTTTGATTATTGGATCGATTTGTGAATCGGTTAAATCTTATTTCATTTGGAGTCAACTCTCTCGGGTTTGTCAGTTTTTTTCATTCAAAGCCATTGCTGAGTTTGCTTAAAATGACAAACAATAAGCAGCATCTCAAATGGTTACATAGAACGATGAATATCAATTACTGCTTCGATCTGCAATTTTAATTTTGGTTGGATCGGTATTTAAATCGTTTATTCATTTCACGTTCAGTCACCTTTATGGTACCAAGTCTTTTCCAGCTTATCAATCATCTTCAGACAATTTGAGAATGTGAGGAAGCTGTGGACTGTAATTTCTATACTAAAAAGTCATTCCTGCTTGTTGGATTGTGTGAACCACCTAATAATTCCCCAGCTGGATTTCTATAGCTGCTAATAACATATTTACTTAATGTTTAACCGATTAATACATTGACATTGCACATCAGAAACGAAATTCAGAAATGTTTCGATATGCAGGTTGACGGTATTGAAGAGGTCTTGAAAACATGTGAATCTGATGTTGCCAACTCATCCATGGAATCCCCTGGAAAGTCAGAAGCATTAGCAAGTGTACCTCGGACTGGTCGCCGAACTACACAACGAAAGACTATCAAACATGACTCAGAAACTATGCAGACCACGACAAGGAGTCACTGCAGAACAAGAGGAACGGTGGTAAGAGACATTGATGAAGCCAAAAAGGATATGCTGGAGACTCCTGCATTGCCAACTACCAGAAGGAGGGCTGCAACAACTTCAGTTCGTGTTAAGCTGGAATCTGCAATGAAGGAATGTGAACCAAAAGAGGAAATTGTGGATCAGGTTGAGGAAGAAAAGAAAGATGTTCCAAAGACACCAGCAGCTGCTCTCACTAGCCAAAGAAAGGAAGTGAAGGCAAAGAGTTCAGTTAGGCAAGTGTACAGCACTCGTCGATCAGTGAGGTTAGCTGGGAAACCTACG</genome_strand>
        <mrna_strand>CTCCCCCAAGCAATCGTAGATCGATTTCCTGTTTCAGTTCAGCAGCAGAGATGGATTTCCACAGCCTCGCAAGGAGAGAATTGCAAGCTCTTTGCAAGAAGAACAAGATCCCAGCTAACTTGACCAATGTTGCCATGGCTGATGCTCTTCAATCTCTTGAATTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGGTATTGAAGAGGTCTTGAAAACATGTGAATCTGATGTTGCCAACCCATCCATGGAATCCCCTGGAAAGTCAGAAGCATTAGCAAGTGTACCTCGGACTGGTCGCCGAACTACACAACGAAAGACAATCAAACATGACTCAGAAACTTTGCAGACCACGACAAGGAGTCACTGCAGAACAAGAGGAACAGTGGTAAGAGACGTTGATGAAGCAAAAAATGATATGCTGGAGACTCCTGCATTGCCAACTACCAGAAGGAGGGCTGCAACAACTTCAGTTCGTGCTAAGCTGGAATCTGCAATGAAGGAATGTGAACCAAAAGAGGAAATTGTGGATCAGGTTGAGGAAGAAAGGAAAGACGTTCCAAAGACACCAGCAGCTGCTCTCACTAGCCAAAGAAAGGAAGTGAAGGCAAAGAGTTCAGTTAGGCAAGTGTACAGCACTCGTCGATCAGTGAGGTTAGCTGGGAAACCTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E486729" ref_strand="+" ref_description="SGN-E486729 [cSTE-23-G11]">
      <seq>cacagcctcgctaggagagaattgcaagctctttgcaagaagaacaagatcccagctaacatgaccaatgtcgctatggctgatgctcttcaatctcttgaatttgttgatggtattgaagaggtcttgaaaacatgtgagtctgatggtgccaactcatccatggaatcccctggaaagtcagaagcattagcaagtgtacctaggactggtcgccgaactacacaacgaaagacaatcaaacttgactcagaaactttgcagaccacgacaaggagtcactgcagaacaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0113N10.1" temp_strand="+" temp_description="C06SLm0113N10.1  AC219227.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0113N10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="34680" stop="36364"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34980" g_stop="35084" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="105" r_length="105" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35085" i_stop="35876" i_length="792">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.907" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35877" g_stop="36064" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="293" r_length="188" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0113N10.1" gen_strand="+" ref_id="SGN-E486729" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>293</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0113N10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E486729" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34980" e_stop="35084"/>
          <exon e_start="35877" e_stop="36064"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAGCCTCGCTAGGAGAGAATTGCAAGCTCTTTGCAAGAAGAACAAGATCCCAGCTAACATAACCAATGTTGCCATGGCTGATGCTCTTCAATCTCTTGAATTTGTAAGTTTTCTTAAATCTAAATATGATAATTTTGTTCCTGTGTTGTAGAATTGATGAGTTTTATTTGAAATGAAAAATGAAATCTGTAGCATTTCTAATGGTTACAGTAGGAAGATGAGTTACCAGTATCTGCCAATATTTTTGTTGTTGGATCGATTTGGTTTACCTAATTTCACTTGCAGTTACCTCTCTTGAGTTTCTGAAATCAAAATGACTACTGAGTCTGTTTAAAATGGGAATAAACTATGCAGCATTTCAATTGGTTACACTAGGAAGAAGAATATCTGTATTTGATTCGATGTGCGAGTGTTTTGATTATTGGATCGATTTGTGAATCGGTTAAATCTTATTTCATTTGGAGTCAACTCTCTCGGGTTTGTCAGTTTTTTTCATTCAAAGCCATTGCTGAGTTTGCTTAAAATGACAAACAATAAGCAGCATCTCAAATGGTTACATAGAACGATGAATATCAATTACTGCTTCGATCTGCAATTTTAATTTTGGTTGGATCGGTATTTAAATCGTTTATTCATTTCACGTTCAGTCACCTTTATGGTACCAAGTCTTTTCCAGCTTATCAATCATCTTCAGACAATTTGAGAATGTGAGGAAGCTGTGGACTGTAATTTCTATACTAAAAAGTCATTCCTGCTTGTTGGATTGTGTGAACCACCTAATAATTCCCCAGCTGGATTTCTATAGCTGCTAATAACATATTTACTTAATGTTTAACCGATTAATACATTGACATTGCACATCAGAAACGAAATTCAGAAATGTTTCGATATGCAGGTTGACGGTATTGAAGAGGTCTTGAAAACATGTGAATCTGATGTTGCCAACTCATCCATGGAATCCCCTGGAAAGTCAGAAGCATTAGCAAGTGTACCTCGGACTGGTCGCCGAACTACACAACGAAAGACTATCAAACATGACTCAGAAACTATGCAGACCACGACAAGGAGTCACTGCAGAACAAG</genome_strand>
        <mrna_strand>CACAGCCTCGCTAGGAGAGAATTGCAAGCTCTTTGCAAGAAGAACAAGATCCCAGCTAACATGACCAATGTCGCTATGGCTGATGCTCTTCAATCTCTTGAATTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATGGTATTGAAGAGGTCTTGAAAACATGTGAGTCTGATGGTGCCAACTCATCCATGGAATCCCCTGGAAAGTCAGAAGCATTAGCAAGTGTACCTAGGACTGGTCGCCGAACTACACAACGAAAGACAATCAAACTTGACTCAGAAACTTTGCAGACCACGACAAGGAGTCACTGCAGAACAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E344545" ref_strand="+" ref_description="SGN-E344545 [cTOF-14-P18]">
      <seq>ttgctggagaagaagaacaacccatggaagaatttgatgttgatggtactgaggctagcgtggttgcaccagctgatgctcaggaagttgctggagatgaatccatggatgactcagaaattgattatgttgaggctactgtggagagtgcagctcacagtcttccccccttgcctgccccagaaccagtcctcactctggcgctggatacgatgcaaaatccttctgccttgacaagcacaaattcagaactcatcactcagacaccagttgagaattcatcagcagtgacaagcataggacagatgcttgttacagataacaaggaaaacttggtttgtacgaaagaaaataaaggcactgctggtgataacttgcaaaatttaagcttgaggaagcttacaaaaatgttgaaagatttgaacatatcaaaaaatcctagtggaaaggaggcagtaacaagatcagccttgcaaaaagttccagaaaaccgtttgatcagtgaaaacgaaaactgaagctcgtaataggggcagaccactccgcctgccattaagatggaagattgaagctctgcaaaccttcttgatttgctacttttgagacatcaaaatttattatccctgttgttttgtgtttcttcagttatttttcaatacttgtatgattaaaacaaaattactcatatgatgatgatgaatgaaatccgtcaaacttctcttcaattcacctgaattattctctttgtcaatctatatctttgaaactcaaattgaataaaaaacttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0113N10.1" temp_strand="+" temp_description="C06SLm0113N10.1  AC219227.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0113N10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="37286" stop="38784"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37586" g_stop="38037" g_length="452"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="452" r_length="452" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38038" i_stop="38147" i_length="110">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38148" g_stop="38484" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="453" r_stop="789" r_length="337" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0113N10.1" gen_strand="+" ref_id="SGN-E344545" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>789</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0113N10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E344545" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37586" e_stop="38037"/>
          <exon e_start="38148" e_stop="38484"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCTGGAGAAGAAGAACAACCCATGGAAGAATTTGATGTTGATGGTACTGAGGCTAGCGTGGTTGCACCAGCTGATGCTCAGGAAGTTGCTGGAGATGAATCCATGGATGACTCAGAAATTGATTATGTTGAGGCTACTGTGGAGAGTGCAGCTCACAGTCTTCCCCCCTTGCCTGCCCCAGAACCAGTCCTCACTCTGGCGCTGGATACGATGCAAAATCCTTCTGCCTTGACAAGCACAAATTCAGAACTCATCACTCAGACACCAGTTGAGAATTCATCAGCAGTGACAAGCATAGGACAGATGCTTGTTACAGATAACAAGGAAAACTTGGTTTGTACGAAAGAAAATAAAGGCACTGCTGGTGATAACTTGCAAAATTTAAGCTTGAGGAAGCTTACAAAAATGTTGAAAGATTTGAACATATCAAAAAATCCTAGTGGAAAGGAGGTAAGAACAACATCAGCTAATCTCCTTTTTCATTCATGTGCTCTTTTTTTACTTGTGGTTGGTAGATGTTTAAATGTGCAATATAATTAAAGTGTTTTTCCTATTCACAGGCAGTAACAAGATCAGCCTTGCAAAAAGTTCCAGAAAACCGTTTGATCAGTGAAAACGAAAACTGAAGCTCGTAATAGGGGCAGACCACTCCGCCTGCCATTAAGATGGAAGATTGAAGCTCTGCAAACCTTCTTGATTTGCTACTTTTGAGACATCAAAATTTATTATCCCTGTTGTTTTGTGTTTCTTCAGTTATTTTTCAATACTTGTATGATTAAAACAAAATTACTCATATGATGATGATGAATGAAATCCGTCAAACTTCTCTTCAATTCACCTGAATTATTCTCTTTGTCAATCTATATCTTTGAAACTCAAATTGAATAAAAAACTTGG</genome_strand>
        <mrna_strand>TTGCTGGAGAAGAAGAACAACCCATGGAAGAATTTGATGTTGATGGTACTGAGGCTAGCGTGGTTGCACCAGCTGATGCTCAGGAAGTTGCTGGAGATGAATCCATGGATGACTCAGAAATTGATTATGTTGAGGCTACTGTGGAGAGTGCAGCTCACAGTCTTCCCCCCTTGCCTGCCCCAGAACCAGTCCTCACTCTGGCGCTGGATACGATGCAAAATCCTTCTGCCTTGACAAGCACAAATTCAGAACTCATCACTCAGACACCAGTTGAGAATTCATCAGCAGTGACAAGCATAGGACAGATGCTTGTTACAGATAACAAGGAAAACTTGGTTTGTACGAAAGAAAATAAAGGCACTGCTGGTGATAACTTGCAAAATTTAAGCTTGAGGAAGCTTACAAAAATGTTGAAAGATTTGAACATATCAAAAAATCCTAGTGGAAAGGAG..............................................................................................................GCAGTAACAAGATCAGCCTTGCAAAAAGTTCCAGAAAACCGTTTGATCAGTGAAAACGAAAACTGAAGCTCGTAATAGGGGCAGACCACTCCGCCTGCCATTAAGATGGAAGATTGAAGCTCTGCAAACCTTCTTGATTTGCTACTTTTGAGACATCAAAATTTATTATCCCTGTTGTTTTGTGTTTCTTCAGTTATTTTTCAATACTTGTATGATTAAAACAAAATTACTCATATGATGATGATGAATGAAATCCGTCAAACTTCTCTTCAATTCACCTGAATTATTCTCTTTGTCAATCTATATCTTTGAAACTCAAATTGAATAAAAAACTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E370913" ref_strand="+" ref_description="SGN-E370913 [TUS-27-H1]">
      <seq>gagaatcggaaaggcaaagcaagagtttcaggcaatcattagagatccatttatgcttaatgctgttatcttggttttcgctaacaagcaggacatgaaaggagcaatgactccaatggaagtgtgtgaaggcctcggtctttatgatcttaaaaaccggaaatggcatatacaaggtgcatgtgctcttaaaggggatggtctatatgagggactagactggttatcaagcactttgaaagatctcaaggccgctgggtactcttcagtggggacttctgccttctgattgatcaggcttactaagaacctatttcgagggacaaagctgattaccctgccgtctgtaaattaaaacgcctgaactcacattgaacattgttacttgttctttcgggtctgtgcttttaaatagtggaatcctgatctagggtgaagcttgacttttgattctgctgtatcctgaaaatgtgggccttgcaattggtcttccgcgtatacaagaattgtgtatgttgatacctactgtagtattttaagtatgtataacttccacatgaaataggtgatcattgatctccctaacaagcatgccaaatcgatccccttaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0113N10.1" temp_strand="-" temp_description="C06SLm0113N10.1  AC219227.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0113N10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="41405" stop="38608"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41105" g_stop="41075" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41074" i_stop="40993" i_length="82">
            <donor d_prob="0.890" d_score="0.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40992" g_stop="40927" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="97" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40926" i_stop="39502" i_length="1425">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39501" g_stop="39302" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="297" r_length="200" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="39301" i_stop="39221" i_length="81">
            <donor d_prob="0.892" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="39220" g_stop="38909" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="609" r_length="312" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="610" polyA_stop="636"/>
      <MATCH_line gen_id="C06SLm0113N10.1" gen_strand="-" ref_id="SGN-E370913" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>609</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0113N10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E370913" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41105" e_stop="41075"/>
          <exon e_start="40992" e_stop="40927"/>
          <exon e_start="39501" e_stop="39302"/>
          <exon e_start="39220" e_stop="38909"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAATCGGAAAGGCAAAGCAAGAGTTTCAGGTTCTGTTTTTGAACTTCTATTTCTTTGCCCCAGGTACAATGGTCACTTACCCACCTAAATCTCATTCTTAATGTGTTTCAGGCAATCATTAGAGATCCATTTATGCTTAATGCTGTTATCTTGGTTTTCGCTAACAAGCAGGACATGGTAAGTTTGTGATATCAGTGGATTTGTGCATCGATAAAATGCAATAGTTGCTTGTTATCTATTGTTCTCTCTTTATGTACTGCTTTCTTAGTGCTGTTTTTTAAAATGTTAACTTTTTATCAAAAAAATAAAAGATACTCAAAGATTTTGCTGACCTTATTGTGCTTATTATCAGATCCTATGTCCTGACCTTTGTAAGCTTTGACATGCTGTTGTTTATTAAGCTTCCCTCTGTGTGATCCACAACTGATGCTTGATGTATTCTGGTACTTGATTAGTGAAAACAAAATGGTGTTGTGGAATCAATATCTCATGAGGTAGATGCTCATGTTGTTTACCTCACCGTCACCGAAGCATACTGATTCAAGAACTAATGAACAGACATACCTCCTTCCTGTTCACCTAGGAATAACTCCTTTTTCCTTTCCACCAAAACCTTACCAAAGTAGACCGCATTAATAATTTAACTATTTGAGATACTTAAATGCAGACAAGTCAGATATTCAGATTCCGTATTTTAGGAAATGGTTTGTTAGATAAAATGAAACGCGTGGAATTAGAATAAGATGACTGAAATGGATTGAGTACTATAACAGTATTATACAATCAGTGGATCCCACATAAAGTGAAATATCAGTTCTATGAAGTGGTTGCGAGACCAAGAGCTTTTTATGAAAGTGAAATTTCTGCCATGAAGGTCTAACATATTCATAAATTAAGTCTAATGAAGGTTTACTTGTTGTTGGGAGTGTTTCTAATATGGTTTGGGACTTGTGTAGAAATAAGTGTGGGATTAAAGAATCTCAAGCATTAGAAAACCTGCCATCTTTATTTTCAATAAAAGCCGTTATTGTTGCCGGAAGTCTTTTTTGTTTGATTAAAGTTGTGTAGGCCAGTATAAAGATAAGTGTGGATTTAGAGAACCTCTAATTGTTAGAACAATATGTATTCAATTTTGTCTTGTTTTCTAATTAAAAGTAAAGAATGAAATGGATTTGATTAAAGTGTAGTGGATGCAGACAAGTGTGAATTACATAATATATCCCAATTAAGTTTCTAATTACATTAATCCCTTAAAAATTTAAAAAAAATGTATACAATAATTGAAGCTCGGATACATAATATGTAGCTCAGATACATTAAATATTGGCTCGGATACGTTAATATGTAGCTCGAATACATTAAAAAATAGCTCAGATACATTAAATACTGGCTCGGATATATTAAAGAAATAAGGGATTTTGGAGATTTTTAAAAGGGGTGTACTTATGCAATATGTCCTATACATGGAGCTTAAGATAATGTAAAAGAAGCAAATCAATTGTCCCCTCAGTCCCCTTTCCATTTTCTCATCTCATGTTTGGTGGATAAATTTTTTATCATATTGATCCTCTTTGTTTATTTTTTCCCCTAATTATGGTCCAGAAAGGAGCAATGACTCCAATGGAAGTGTGTGAAGGCCTCGGTCTTTATGATCTTAAAAACCGGAAATGGCATATACAAGGTGCATGTGCTCTTAAAGGGGATGGTCTATATGAGGGACTAGACTGGTTATCAAGCACTTTGAAAGATCTCAAGGCCGCTGGGTACTCTTCAGTGGGGACTTCTGCCTTCTGATTGATCAGGTCTACAACTTGGCTTCTATGTCTTCAAGATTGTCACAGTCATCCCTAACCTGTTGATCTAACTTTAATTTGCTTTTGCAGGCTTACTAAGAACCTATTTCGAGGGACAAAGCTGATTACCCTGCCGTCTGTAAATTAAAACGCCTGAACTCACATTGAACATTGTTACTTGTTCTTTCGGGTCTGTGCTTTTAAATAGTGGAATCCTGATCTAGGGTGAAGCTTGACTTTTGATTCTGCTGTATCCTGAAAATGTGGGCCTTGCAATTGGTCTTCCGCGTATACAAGAATTGTGTATGTTGATACCTACTGTAGTATTTTAAGTATGTATAACTTCCACATGAAATAGGTGATCATTGATCTCCCTAACAAGCATGCCAAATCGATCCCCTT</genome_strand>
        <mrna_strand>GAGAATCGGAAAGGCAAAGCAAGAGTTTCAG..................................................................................GCAATCATTAGAGATCCATTTATGCTTAATGCTGTTATCTTGGTTTTCGCTAACAAGCAGGACATG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGGAGCAATGACTCCAATGGAAGTGTGTGAAGGCCTCGGTCTTTATGATCTTAAAAACCGGAAATGGCATATACAAGGTGCATGTGCTCTTAAAGGGGATGGTCTATATGAGGGACTAGACTGGTTATCAAGCACTTTGAAAGATCTCAAGGCCGCTGGGTACTCTTCAGTGGGGACTTCTGCCTTCTGATTGATCAG.................................................................................GCTTACTAAGAACCTATTTCGAGGGACAAAGCTGATTACCCTGCCGTCTGTAAATTAAAACGCCTGAACTCACATTGAACATTGTTACTTGTTCTTTCGGGTCTGTGCTTTTAAATAGTGGAATCCTGATCTAGGGTGAAGCTTGACTTTTGATTCTGCTGTATCCTGAAAATGTGGGCCTTGCAATTGGTCTTCCGCGTATACAAGAATTGTGTATGTTGATACCTACTGTAGTATTTTAAGTATGTATAACTTCCACATGAAATAGGTGATCATTGATCTCCCTAACAAGCATGCCAAATCGATCCCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E370912" ref_strand="+" ref_description="SGN-E370912 [TUS-27-H1](-)">
      <seq>atcggaaaggcaaagcaagagtttcaggcaatcattagagatccatttatgcttaatgctgttatcttggttttcgctaacaagcaggacatgaaaggagcaatgactccaatggaagtgtgtgaaggcctcggtctttatgatcttaaaaaccggaaatggcatatacaaggtgcatgtgctcttaaaggggatggtctatatgagggactagactggttatcaagcactttgaaagatctcaaggccgctgggtactcttcagtggggacttttgccttttgattgatcaggcttactaagaacctatttcgagggacaaagctgattaccctgccgtctgtaaattaaaacgcctgaactcacattgaacattgttacttgttctttcgggtttgtgcttttaaatagtggaatcctgatttagggtgaagcttgacttttgattttgctgtatcctgaaaatgtgggccttgcaattggttttccgcgtatacaagaattgtgtatgttgatacctactgtagtattttaagtatgtataacttccacatgaaataggtgatcattgatctccctaacaagcatgccaaatcgatccccttaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0113N10.1" temp_strand="-" temp_description="C06SLm0113N10.1  AC219227.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0113N10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="41401" stop="38608"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41101" g_stop="41075" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="27" r_length="27" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41074" i_stop="40993" i_length="82">
            <donor d_prob="0.890" d_score="0.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40992" g_stop="40927" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="93" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40926" i_stop="39502" i_length="1425">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39501" g_stop="39302" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="293" r_length="200" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="39301" i_stop="39221" i_length="81">
            <donor d_prob="0.892" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="39220" g_stop="38909" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="605" r_length="312" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="606" polyA_stop="632"/>
      <MATCH_line gen_id="C06SLm0113N10.1" gen_strand="-" ref_id="SGN-E370912" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>605</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0113N10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E370912" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41101" e_stop="41075"/>
          <exon e_start="40992" e_stop="40927"/>
          <exon e_start="39501" e_stop="39302"/>
          <exon e_start="39220" e_stop="38909"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCGGAAAGGCAAAGCAAGAGTTTCAGGTTCTGTTTTTGAACTTCTATTTCTTTGCCCCAGGTACAATGGTCACTTACCCACCTAAATCTCATTCTTAATGTGTTTCAGGCAATCATTAGAGATCCATTTATGCTTAATGCTGTTATCTTGGTTTTCGCTAACAAGCAGGACATGGTAAGTTTGTGATATCAGTGGATTTGTGCATCGATAAAATGCAATAGTTGCTTGTTATCTATTGTTCTCTCTTTATGTACTGCTTTCTTAGTGCTGTTTTTTAAAATGTTAACTTTTTATCAAAAAAATAAAAGATACTCAAAGATTTTGCTGACCTTATTGTGCTTATTATCAGATCCTATGTCCTGACCTTTGTAAGCTTTGACATGCTGTTGTTTATTAAGCTTCCCTCTGTGTGATCCACAACTGATGCTTGATGTATTCTGGTACTTGATTAGTGAAAACAAAATGGTGTTGTGGAATCAATATCTCATGAGGTAGATGCTCATGTTGTTTACCTCACCGTCACCGAAGCATACTGATTCAAGAACTAATGAACAGACATACCTCCTTCCTGTTCACCTAGGAATAACTCCTTTTTCCTTTCCACCAAAACCTTACCAAAGTAGACCGCATTAATAATTTAACTATTTGAGATACTTAAATGCAGACAAGTCAGATATTCAGATTCCGTATTTTAGGAAATGGTTTGTTAGATAAAATGAAACGCGTGGAATTAGAATAAGATGACTGAAATGGATTGAGTACTATAACAGTATTATACAATCAGTGGATCCCACATAAAGTGAAATATCAGTTCTATGAAGTGGTTGCGAGACCAAGAGCTTTTTATGAAAGTGAAATTTCTGCCATGAAGGTCTAACATATTCATAAATTAAGTCTAATGAAGGTTTACTTGTTGTTGGGAGTGTTTCTAATATGGTTTGGGACTTGTGTAGAAATAAGTGTGGGATTAAAGAATCTCAAGCATTAGAAAACCTGCCATCTTTATTTTCAATAAAAGCCGTTATTGTTGCCGGAAGTCTTTTTTGTTTGATTAAAGTTGTGTAGGCCAGTATAAAGATAAGTGTGGATTTAGAGAACCTCTAATTGTTAGAACAATATGTATTCAATTTTGTCTTGTTTTCTAATTAAAAGTAAAGAATGAAATGGATTTGATTAAAGTGTAGTGGATGCAGACAAGTGTGAATTACATAATATATCCCAATTAAGTTTCTAATTACATTAATCCCTTAAAAATTTAAAAAAAATGTATACAATAATTGAAGCTCGGATACATAATATGTAGCTCAGATACATTAAATATTGGCTCGGATACGTTAATATGTAGCTCGAATACATTAAAAAATAGCTCAGATACATTAAATACTGGCTCGGATATATTAAAGAAATAAGGGATTTTGGAGATTTTTAAAAGGGGTGTACTTATGCAATATGTCCTATACATGGAGCTTAAGATAATGTAAAAGAAGCAAATCAATTGTCCCCTCAGTCCCCTTTCCATTTTCTCATCTCATGTTTGGTGGATAAATTTTTTATCATATTGATCCTCTTTGTTTATTTTTTCCCCTAATTATGGTCCAGAAAGGAGCAATGACTCCAATGGAAGTGTGTGAAGGCCTCGGTCTTTATGATCTTAAAAACCGGAAATGGCATATACAAGGTGCATGTGCTCTTAAAGGGGATGGTCTATATGAGGGACTAGACTGGTTATCAAGCACTTTGAAAGATCTCAAGGCCGCTGGGTACTCTTCAGTGGGGACTTCTGCCTTCTGATTGATCAGGTCTACAACTTGGCTTCTATGTCTTCAAGATTGTCACAGTCATCCCTAACCTGTTGATCTAACTTTAATTTGCTTTTGCAGGCTTACTAAGAACCTATTTCGAGGGACAAAGCTGATTACCCTGCCGTCTGTAAATTAAAACGCCTGAACTCACATTGAACATTGTTACTTGTTCTTTCGGGTCTGTGCTTTTAAATAGTGGAATCCTGATCTAGGGTGAAGCTTGACTTTTGATTCTGCTGTATCCTGAAAATGTGGGCCTTGCAATTGGTCTTCCGCGTATACAAGAATTGTGTATGTTGATACCTACTGTAGTATTTTAAGTATGTATAACTTCCACATGAAATAGGTGATCATTGATCTCCCTAACAAGCATGCCAAATCGATCCCCTT</genome_strand>
        <mrna_strand>ATCGGAAAGGCAAAGCAAGAGTTTCAG..................................................................................GCAATCATTAGAGATCCATTTATGCTTAATGCTGTTATCTTGGTTTTCGCTAACAAGCAGGACATG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGGAGCAATGACTCCAATGGAAGTGTGTGAAGGCCTCGGTCTTTATGATCTTAAAAACCGGAAATGGCATATACAAGGTGCATGTGCTCTTAAAGGGGATGGTCTATATGAGGGACTAGACTGGTTATCAAGCACTTTGAAAGATCTCAAGGCCGCTGGGTACTCTTCAGTGGGGACTTTTGCCTTTTGATTGATCAG.................................................................................GCTTACTAAGAACCTATTTCGAGGGACAAAGCTGATTACCCTGCCGTCTGTAAATTAAAACGCCTGAACTCACATTGAACATTGTTACTTGTTCTTTCGGGTTTGTGCTTTTAAATAGTGGAATCCTGATTTAGGGTGAAGCTTGACTTTTGATTTTGCTGTATCCTGAAAATGTGGGCCTTGCAATTGGTTTTCCGCGTATACAAGAATTGTGTATGTTGATACCTACTGTAGTATTTTAAGTATGTATAACTTCCACATGAAATAGGTGATCATTGATCTCCCTAACAAGCATGCCAAATCGATCCCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E349473" ref_strand="+" ref_description="SGN-E349473 [cTOS-1-C1]">
      <seq>ttatcaagcactttgaaagatctcaaggccgctgggtactcttcagtggggacttctgccttctgattgatcaggcttactaagaacctatttcgagggacaaagctgattaccctgccgtctgtaaattaaaacgcctgaactcacattgaacattgttacttgttctttcgggtctgtgcttttaaatagtggaatcctgatctagggtgaagcttgacttttgattctgctgtatcctgaaaatgtgggccttgcaattggtcttccgcgtatacaagaattgtgtatgttgatacctactgtagtattttaagtatgtataacttccacatgaaataggtgatcattgatctccctaacaagcatgccaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0113N10.1" temp_strand="-" temp_description="C06SLm0113N10.1  AC219227.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0113N10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="39675" stop="38620"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39375" g_stop="39302" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39301" i_stop="39221" i_length="81">
            <donor d_prob="0.892" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39220" g_stop="38921" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="374" r_length="300" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="375" polyA_stop="388"/>
      <MATCH_line gen_id="C06SLm0113N10.1" gen_strand="-" ref_id="SGN-E349473" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>374</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0113N10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E349473" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39375" e_stop="39302"/>
          <exon e_start="39220" e_stop="38921"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATCAAGCACTTTGAAAGATCTCAAGGCCGCTGGGTACTCTTCAGTGGGGACTTCTGCCTTCTGATTGATCAGGTCTACAACTTGGCTTCTATGTCTTCAAGATTGTCACAGTCATCCCTAACCTGTTGATCTAACTTTAATTTGCTTTTGCAGGCTTACTAAGAACCTATTTCGAGGGACAAAGCTGATTACCCTGCCGTCTGTAAATTAAAACGCCTGAACTCACATTGAACATTGTTACTTGTTCTTTCGGGTCTGTGCTTTTAAATAGTGGAATCCTGATCTAGGGTGAAGCTTGACTTTTGATTCTGCTGTATCCTGAAAATGTGGGCCTTGCAATTGGTCTTCCGCGTATACAAGAATTGTGTATGTTGATACCTACTGTAGTATTTTAAGTATGTATAACTTCCACATGAAATAGGTGATCATTGATCTCCCTAACAAGCATGCCAA</genome_strand>
        <mrna_strand>TTATCAAGCACTTTGAAAGATCTCAAGGCCGCTGGGTACTCTTCAGTGGGGACTTCTGCCTTCTGATTGATCAG.................................................................................GCTTACTAAGAACCTATTTCGAGGGACAAAGCTGATTACCCTGCCGTCTGTAAATTAAAACGCCTGAACTCACATTGAACATTGTTACTTGTTCTTTCGGGTCTGTGCTTTTAAATAGTGGAATCCTGATCTAGGGTGAAGCTTGACTTTTGATTCTGCTGTATCCTGAAAATGTGGGCCTTGCAATTGGTCTTCCGCGTATACAAGAATTGTGTATGTTGATACCTACTGTAGTATTTTAAGTATGTATAACTTCCACATGAAATAGGTGATCATTGATCTCCCTAACAAGCATGCCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E354959" ref_strand="+" ref_description="SGN-E354959 [cTOS-19-M2]">
      <seq>ttatcaagcactttgaaagatctcaaggccgctgggtactcttcagtggggacttctgccttctgattgatcaggcttactaagaacctatttcgagggacaaagctgattaccctgccgtctgtaaattaaaacgcctgaactcacattgaacattgttacttgttctttcgggtctgtgcttttaaatagtggaatcctgatctagggtgaagcttgacttttgattctgctgtatcctgaaaatgtgggccttgcaattggtcttccgcgtatacaagaattgtgtatgttgatacctactgtagtattttaagtatgtataacttccacatgaaataggtgatcattgatctccctaacaagcatgccaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0113N10.1" temp_strand="-" temp_description="C06SLm0113N10.1  AC219227.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0113N10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="39675" stop="38620"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39375" g_stop="39302" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39301" i_stop="39221" i_length="81">
            <donor d_prob="0.892" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39220" g_stop="38921" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="374" r_length="300" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="375" polyA_stop="387"/>
      <MATCH_line gen_id="C06SLm0113N10.1" gen_strand="-" ref_id="SGN-E354959" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>374</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0113N10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E354959" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39375" e_stop="39302"/>
          <exon e_start="39220" e_stop="38921"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATCAAGCACTTTGAAAGATCTCAAGGCCGCTGGGTACTCTTCAGTGGGGACTTCTGCCTTCTGATTGATCAGGTCTACAACTTGGCTTCTATGTCTTCAAGATTGTCACAGTCATCCCTAACCTGTTGATCTAACTTTAATTTGCTTTTGCAGGCTTACTAAGAACCTATTTCGAGGGACAAAGCTGATTACCCTGCCGTCTGTAAATTAAAACGCCTGAACTCACATTGAACATTGTTACTTGTTCTTTCGGGTCTGTGCTTTTAAATAGTGGAATCCTGATCTAGGGTGAAGCTTGACTTTTGATTCTGCTGTATCCTGAAAATGTGGGCCTTGCAATTGGTCTTCCGCGTATACAAGAATTGTGTATGTTGATACCTACTGTAGTATTTTAAGTATGTATAACTTCCACATGAAATAGGTGATCATTGATCTCCCTAACAAGCATGCCAA</genome_strand>
        <mrna_strand>TTATCAAGCACTTTGAAAGATCTCAAGGCCGCTGGGTACTCTTCAGTGGGGACTTCTGCCTTCTGATTGATCAG.................................................................................GCTTACTAAGAACCTATTTCGAGGGACAAAGCTGATTACCCTGCCGTCTGTAAATTAAAACGCCTGAACTCACATTGAACATTGTTACTTGTTCTTTCGGGTCTGTGCTTTTAAATAGTGGAATCCTGATCTAGGGTGAAGCTTGACTTTTGATTCTGCTGTATCCTGAAAATGTGGGCCTTGCAATTGGTCTTCCGCGTATACAAGAATTGTGTATGTTGATACCTACTGTAGTATTTTAAGTATGTATAACTTCCACATGAAATAGGTGATCATTGATCTCCCTAACAAGCATGCCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E619947" ref_strand="-" ref_description="SGN-E619947 [70642]">
      <seq>tacaagctgcatataggagaagttctgtccacagttcctactattggtttcaatgtagaaaaagtgcagtacaagaatgtggtttttactgtgtgggacgttggaggacaagagaaattaaggccactttggaggcattacttcaataacacagatggactgatttacgtcgttgactctttggatcgagagagaatcggaaaggcaaagcaagagtttcaggcgatcattagagatccatttatgcttaatgctgtcatcttggtttttgctaacaagcaggacatgaaaggagcaatgactccaatggaagtgtgtgaaggcctcggtctttatgatcttaaaaaccggaaatggcatatacaaggtgcatgtgctcttaaaggggatggtctatatgagggactagactggttatcaagcactttgaaagatctcaaggctgctgggtactcttcagtggggacttcagccttctgattgatcaggcttactaagaacctatttgagggacaaagctgattaccctgccgtctgtatattaaacgcctgaactcacattgaacattgttacttgttctttcgggtctgtgcttttatgtagtggaatcctgatctagggtgaagcttgatttttgattctgctgtatgctgaaaatgtgggcgttgcaattggtcttccccgtacacgagaattgtgtctgttgatacctactgtagtattttaagtatgtatacttccacatgaaattaggtgattaatgatctccctaacaagcatgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0113N10.1" temp_strand="-" temp_description="C06SLm0113N10.1  AC219227.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0113N10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="42503" stop="38623"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42203" g_stop="42158" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42157" i_stop="41579" i_length="579">
            <donor d_prob="0.661" d_score="0.98"/>
            <acceptor a_prob="0.930" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41578" g_stop="41463" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="162" r_length="116" r_score="0.974"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41462" i_stop="41135" i_length="328">
            <donor d_prob="0.679" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41134" g_stop="41075" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="222" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41074" i_stop="40993" i_length="82">
            <donor d_prob="0.890" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="40992" g_stop="40927" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="288" r_length="66" r_score="0.955"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="40926" i_stop="39502" i_length="1425">
            <donor d_prob="0.983" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="39501" g_stop="39302" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="488" r_length="200" r_score="0.990"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="39301" i_stop="39221" i_length="81">
            <donor d_prob="0.892" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="39220" g_stop="38923" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="489" r_stop="784" r_length="296" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0113N10.1" gen_strand="-" ref_id="SGN-E619947" ref_strand="-">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>786</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0113N10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E619947" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="42203" e_stop="42158"/>
          <exon e_start="41578" e_stop="41463"/>
          <exon e_start="41134" e_stop="41075"/>
          <exon e_start="40992" e_stop="40927"/>
          <exon e_start="39501" e_stop="39302"/>
          <exon e_start="39220" e_stop="38923"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACAAGCTGCATATAGGAGAAGTTCTGTCTACAGTTCCTACTATTGGTATGCTATTGCTAAATTCTCGCTTGCAGTGTTGTGGCACTTAAATGTTTTGTTGGTTCAGTTATGAATCTGCTTGCATTGATATTGTTCTCGACTTGACAACTTTGAGTTCTTTTAATTACTTGTTGCTTGATGAATTTGAAGTTTCAACTAATTGCAATATGACCTATCAATATATTTACCAAAGAATGACCTATCAATGTCATACACAAAACTTTTTATTAAAAGAAGAATCACCGACATCTAAAAGATGTGGTAGCTTTGTTACAAAGAAGGAACTTTGAGAGGCCATGCTAGAGTTAGGTAAAAACATCATCAACCAAATCATTCTTTTTTTTTCTTCTAATTCTCTGACTGGATATAAGTCGTTTTATTCTCTTCCTAATTATGAGGCGCCATCTTATAAGGTCACATTATAGTGGTTGCAGAAGGCGAGTAAATTGGAATCTCAAATCTTGCAATGGAAATTGCTTCCGATTTGAAATATCGCATAGTTTTGCATATATATGTATTGAACACCTATGAGACCTAGTGAATACCTGTATATGTAATAGCTGATTGTATATGCATGGCATGCAGGTTTCAATGTAGAAAAAGTGCAGTACAAGAATGTGGTTTTTACTGTGTGGGACGTTGGAGGACAAGAGAAACTAAGACCACTTTGGAGGCATTATTTCAATAACACAGATGGACTGGTAAAACTATATATATTAGATTGTATCCGTGTCGACGAATATTCATCTACTGTTGATTTAAATTTTAGTGTCATTAGATTCCATAGGAAAAGATGAATCTTCCCTCTTTTTTTCTCATAGATGCTATTACCTAAAAGTCGCATAGGAAACTTAATTCGGGAAGGGTAATAAGAAATTTTAAATGGGAAAATGTGTTAATGTGATATACCATTTGAACCATCATTACTGAGTGCCTTAAAAATCAAACCTACATTTTCCGTTTTATGTGAACAGCCCCTGCCTTTGTAAAATGGTTATTTCTGTTTACTAAGTGCTTTGTTGTATACAGATTTACGTCGTTGACTCTTTGGATCGAGAGAGAATCGGAAAGGCAAAGCAAGAGTTTCAGGTTCTGTTTTTGAACTTCTATTTCTTTGCCCCAGGTACAATGGTCACTTACCCACCTAAATCTCATTCTTAATGTGTTTCAGGCAATCATTAGAGATCCATTTATGCTTAATGCTGTTATCTTGGTTTTCGCTAACAAGCAGGACATGGTAAGTTTGTGATATCAGTGGATTTGTGCATCGATAAAATGCAATAGTTGCTTGTTATCTATTGTTCTCTCTTTATGTACTGCTTTCTTAGTGCTGTTTTTTAAAATGTTAACTTTTTATCAAAAAAATAAAAGATACTCAAAGATTTTGCTGACCTTATTGTGCTTATTATCAGATCCTATGTCCTGACCTTTGTAAGCTTTGACATGCTGTTGTTTATTAAGCTTCCCTCTGTGTGATCCACAACTGATGCTTGATGTATTCTGGTACTTGATTAGTGAAAACAAAATGGTGTTGTGGAATCAATATCTCATGAGGTAGATGCTCATGTTGTTTACCTCACCGTCACCGAAGCATACTGATTCAAGAACTAATGAACAGACATACCTCCTTCCTGTTCACCTAGGAATAACTCCTTTTTCCTTTCCACCAAAACCTTACCAAAGTAGACCGCATTAATAATTTAACTATTTGAGATACTTAAATGCAGACAAGTCAGATATTCAGATTCCGTATTTTAGGAAATGGTTTGTTAGATAAAATGAAACGCGTGGAATTAGAATAAGATGACTGAAATGGATTGAGTACTATAACAGTATTATACAATCAGTGGATCCCACATAAAGTGAAATATCAGTTCTATGAAGTGGTTGCGAGACCAAGAGCTTTTTATGAAAGTGAAATTTCTGCCATGAAGGTCTAACATATTCATAAATTAAGTCTAATGAAGGTTTACTTGTTGTTGGGAGTGTTTCTAATATGGTTTGGGACTTGTGTAGAAATAAGTGTGGGATTAAAGAATCTCAAGCATTAGAAAACCTGCCATCTTTATTTTCAATAAAAGCCGTTATTGTTGCCGGAAGTCTTTTTTGTTTGATTAAAGTTGTGTAGGCCAGTATAAAGATAAGTGTGGATTTAGAGAACCTCTAATTGTTAGAACAATATGTATTCAATTTTGTCTTGTTTTCTAATTAAAAGTAAAGAATGAAATGGATTTGATTAAAGTGTAGTGGATGCAGACAAGTGTGAATTACATAATATATCCCAATTAAGTTTCTAATTACATTAATCCCTTAAAAATTTAAAAAAAATGTATACAATAATTGAAGCTCGGATACATAATATGTAGCTCAGATACATTAAATATTGGCTCGGATACGTTAATATGTAGCTCGAATACATTAAAAAATAGCTCAGATACATTAAATACTGGCTCGGATATATTAAAGAAATAAGGGATTTTGGAGATTTTTAAAAGGGGTGTACTTATGCAATATGTCCTATACATGGAGCTTAAGATAATGTAAAAGAAGCAAATCAATTGTCCCCTCAGTCCCCTTTCCATTTTCTCATCTCATGTTTGGTGGATAAATTTTTTATCATATTGATCCTCTTTGTTTATTTTTTCCCCTAATTATGGTCCAGAAAGGAGCAATGACTCCAATGGAAGTGTGTGAAGGCCTCGGTCTTTATGATCTTAAAAACCGGAAATGGCATATACAAGGTGCATGTGCTCTTAAAGGGGATGGTCTATATGAGGGACTAGACTGGTTATCAAGCACTTTGAAAGATCTCAAGGCCGCTGGGTACTCTTCAGTGGGGACTTCTGCCTTCTGATTGATCAGGTCTACAACTTGGCTTCTATGTCTTCAAGATTGTCACAGTCATCCCTAACCTGTTGATCTAACTTTAATTTGCTTTTGCAGGCTTACTAAGAACCTATTTCGAGGGACAAAGCTGATTACCCTGCCGTCTGTAAATTAAAACGCCTGAACTCACATTGAACATTGTTACTTGTTCTTTCGGGTCTGTGCTTTTAAATAGTGGAATCCTGATCTAGGGTGAAGCTTGACTTTTGATTCTGCTGTATCCTGAAAATGTGGGCCTTGCAATTGGTCTTCCGCGTATACAAGAATTGTGTATGTTGATACCTACTGTAGTATTTTAAGTATGTATAACTTCCACATGAAA-TAGGTGATCATTGATCTCCCTAACAAGCATGCC</genome_strand>
        <mrna_strand>TACAAGCTGCATATAGGAGAAGTTCTGTCCACAGTTCCTACTATTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCAATGTAGAAAAAGTGCAGTACAAGAATGTGGTTTTTACTGTGTGGGACGTTGGAGGACAAGAGAAATTAAGGCCACTTTGGAGGCATTACTTCAATAACACAGATGGACTG........................................................................................................................................................................................................................................................................................................................................ATTTACGTCGTTGACTCTTTGGATCGAGAGAGAATCGGAAAGGCAAAGCAAGAGTTTCAG..................................................................................GCGATCATTAGAGATCCATTTATGCTTAATGCTGTCATCTTGGTTTTTGCTAACAAGCAGGACATG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGGAGCAATGACTCCAATGGAAGTGTGTGAAGGCCTCGGTCTTTATGATCTTAAAAACCGGAAATGGCATATACAAGGTGCATGTGCTCTTAAAGGGGATGGTCTATATGAGGGACTAGACTGGTTATCAAGCACTTTGAAAGATCTCAAGGCTGCTGGGTACTCTTCAGTGGGGACTTCAGCCTTCTGATTGATCAG.................................................................................GCTTACTAAGAACCTATTT-GAGGGACAAAGCTGATTACCCTGCCGTCTGTATATT-AAACGCCTGAACTCACATTGAACATTGTTACTTGTTCTTTCGGGTCTGTGCTTTTATGTAGTGGAATCCTGATCTAGGGTGAAGCTTGATTTTTGATTCTGCTGTATGCTGAAAATGTGGGCGTTGCAATTGGTCTTCCCCGTACACGAGAATTGTGTCTGTTGATACCTACTGTAGTATTTTAAGTATGTAT-ACTTCCACATGAAATTAGGTGATTAATGATCTCCCTAACAAGCATGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E270341" ref_strand="+" ref_description="SGN-E270341 [cLEM-1-K17]">
      <seq>ggagagaatcggaaaggcaaagcaagagtttcaggcaatcattagagatccatttatgcttaatgctgttatcttggttttcgctaacaagcaggacatgaaaggagcaatgactccaatggaagtgtgtgaaggcctcggtctttatgatcttaaaaaccggaaatggcatatacaaggtgcatgtgctcttaaaggggatggtctatatgagggactagactggttatcaagcactttgaaagatctcaaggccgctgggtactcttcagtggggacttctgccttctgattgatcaggcttactaagaacctatttcgagggacaaagctgattaccctgccgtctgtaaattaaaacgcctgaactcacattgaacattgttacttgttctttcgggtctgtgcttttaaatagtggaatcctgatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0113N10.1" temp_strand="-" temp_description="C06SLm0113N10.1  AC219227.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0113N10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="41407" stop="38789"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41108" g_stop="41075" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41074" i_stop="40993" i_length="82">
            <donor d_prob="0.890" d_score="0.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40992" g_stop="40927" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="100" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40926" i_stop="39502" i_length="1425">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39501" g_stop="39302" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="300" r_length="200" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="39301" i_stop="39221" i_length="81">
            <donor d_prob="0.892" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="39220" g_stop="39089" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="432" r_length="132" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0113N10.1" gen_strand="-" ref_id="SGN-E270341" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>432</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0113N10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E270341" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41108" e_stop="41075"/>
          <exon e_start="40992" e_stop="40927"/>
          <exon e_start="39501" e_stop="39302"/>
          <exon e_start="39220" e_stop="39089"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGAGAATCGGAAAGGCAAAGCAAGAGTTTCAGGTTCTGTTTTTGAACTTCTATTTCTTTGCCCCAGGTACAATGGTCACTTACCCACCTAAATCTCATTCTTAATGTGTTTCAGGCAATCATTAGAGATCCATTTATGCTTAATGCTGTTATCTTGGTTTTCGCTAACAAGCAGGACATGGTAAGTTTGTGATATCAGTGGATTTGTGCATCGATAAAATGCAATAGTTGCTTGTTATCTATTGTTCTCTCTTTATGTACTGCTTTCTTAGTGCTGTTTTTTAAAATGTTAACTTTTTATCAAAAAAATAAAAGATACTCAAAGATTTTGCTGACCTTATTGTGCTTATTATCAGATCCTATGTCCTGACCTTTGTAAGCTTTGACATGCTGTTGTTTATTAAGCTTCCCTCTGTGTGATCCACAACTGATGCTTGATGTATTCTGGTACTTGATTAGTGAAAACAAAATGGTGTTGTGGAATCAATATCTCATGAGGTAGATGCTCATGTTGTTTACCTCACCGTCACCGAAGCATACTGATTCAAGAACTAATGAACAGACATACCTCCTTCCTGTTCACCTAGGAATAACTCCTTTTTCCTTTCCACCAAAACCTTACCAAAGTAGACCGCATTAATAATTTAACTATTTGAGATACTTAAATGCAGACAAGTCAGATATTCAGATTCCGTATTTTAGGAAATGGTTTGTTAGATAAAATGAAACGCGTGGAATTAGAATAAGATGACTGAAATGGATTGAGTACTATAACAGTATTATACAATCAGTGGATCCCACATAAAGTGAAATATCAGTTCTATGAAGTGGTTGCGAGACCAAGAGCTTTTTATGAAAGTGAAATTTCTGCCATGAAGGTCTAACATATTCATAAATTAAGTCTAATGAAGGTTTACTTGTTGTTGGGAGTGTTTCTAATATGGTTTGGGACTTGTGTAGAAATAAGTGTGGGATTAAAGAATCTCAAGCATTAGAAAACCTGCCATCTTTATTTTCAATAAAAGCCGTTATTGTTGCCGGAAGTCTTTTTTGTTTGATTAAAGTTGTGTAGGCCAGTATAAAGATAAGTGTGGATTTAGAGAACCTCTAATTGTTAGAACAATATGTATTCAATTTTGTCTTGTTTTCTAATTAAAAGTAAAGAATGAAATGGATTTGATTAAAGTGTAGTGGATGCAGACAAGTGTGAATTACATAATATATCCCAATTAAGTTTCTAATTACATTAATCCCTTAAAAATTTAAAAAAAATGTATACAATAATTGAAGCTCGGATACATAATATGTAGCTCAGATACATTAAATATTGGCTCGGATACGTTAATATGTAGCTCGAATACATTAAAAAATAGCTCAGATACATTAAATACTGGCTCGGATATATTAAAGAAATAAGGGATTTTGGAGATTTTTAAAAGGGGTGTACTTATGCAATATGTCCTATACATGGAGCTTAAGATAATGTAAAAGAAGCAAATCAATTGTCCCCTCAGTCCCCTTTCCATTTTCTCATCTCATGTTTGGTGGATAAATTTTTTATCATATTGATCCTCTTTGTTTATTTTTTCCCCTAATTATGGTCCAGAAAGGAGCAATGACTCCAATGGAAGTGTGTGAAGGCCTCGGTCTTTATGATCTTAAAAACCGGAAATGGCATATACAAGGTGCATGTGCTCTTAAAGGGGATGGTCTATATGAGGGACTAGACTGGTTATCAAGCACTTTGAAAGATCTCAAGGCCGCTGGGTACTCTTCAGTGGGGACTTCTGCCTTCTGATTGATCAGGTCTACAACTTGGCTTCTATGTCTTCAAGATTGTCACAGTCATCCCTAACCTGTTGATCTAACTTTAATTTGCTTTTGCAGGCTTACTAAGAACCTATTTCGAGGGACAAAGCTGATTACCCTGCCGTCTGTAAATTAAAACGCCTGAACTCACATTGAACATTGTTACTTGTTCTTTCGGGTCTGTGCTTTTAAATAGTGGAATCCTGATCT</genome_strand>
        <mrna_strand>GGAGAGAATCGGAAAGGCAAAGCAAGAGTTTCAG..................................................................................GCAATCATTAGAGATCCATTTATGCTTAATGCTGTTATCTTGGTTTTCGCTAACAAGCAGGACATG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGGAGCAATGACTCCAATGGAAGTGTGTGAAGGCCTCGGTCTTTATGATCTTAAAAACCGGAAATGGCATATACAAGGTGCATGTGCTCTTAAAGGGGATGGTCTATATGAGGGACTAGACTGGTTATCAAGCACTTTGAAAGATCTCAAGGCCGCTGGGTACTCTTCAGTGGGGACTTCTGCCTTCTGATTGATCAG.................................................................................GCTTACTAAGAACCTATTTCGAGGGACAAAGCTGATTACCCTGCCGTCTGTAAATTAAAACGCCTGAACTCACATTGAACATTGTTACTTGTTCTTTCGGGTCTGTGCTTTTAAATAGTGGAATCCTGATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E619561" ref_strand="+" ref_description="SGN-E619561 [70253]">
      <seq>aaaaacaacgctaccttctccatatttatcaaatcgatcatcatcaaataaagtatgaagttttaaagtttctcagatcaccaaattgtagtaacagattagcttctctaacttggatccttcacgtttcactctccaatttcatctgattcgcttttggagaaacgaaaaaaggagtgaagaagaagaagagacaaggcaaaaggcgtaatgggacaagcttttcgcaagctatttgatactttcttcggcaactctgagatgagggttgtgatgctagggctggatgcggctgggaaaacaactatattgtacaagctgcatataggagaagttctgtccacagttcctactattggtttcaatgtagaaaaagtgcagtacaagaatgtggtttttactgtgtgggacgttggaggacaagagaaattaaggccactttggaggcattacttcaataacacagatggactgatttacgtcgttgactctttggatcgagagagaatcggaaaggcaaagcaagagtttcaggcgatcattagagatccatttatgcttaatgctgtcatcttggtttttgctaacaagcaggacatgaacaggagcaatgactccaatggaagtgtgtgaaggcctcggtctttatgatcttaaaaaccggaaatgggcatatacaaggtgcatgtgctcttaaaggggatggtcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0113N10.1" temp_strand="-" temp_description="C06SLm0113N10.1  AC219227.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0113N10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="44773" stop="39094"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44473" g_stop="44201" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="267" r_length="267" r_score="0.908"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44200" i_stop="42249" i_length="1952">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42248" g_stop="42158" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="358" r_length="91" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42157" i_stop="41579" i_length="579">
            <donor d_prob="0.661" d_score="0.98"/>
            <acceptor a_prob="0.930" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41578" g_stop="41463" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="359" r_stop="474" r_length="116" r_score="0.974"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41462" i_stop="41135" i_length="328">
            <donor d_prob="0.679" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41134" g_stop="41075" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="475" r_stop="534" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41074" i_stop="40993" i_length="82">
            <donor d_prob="0.890" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="40992" g_stop="40927" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="535" r_stop="600" r_length="66" r_score="0.955"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="40926" i_stop="39502" i_length="1425">
            <donor d_prob="0.983" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="39501" g_stop="39394" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="601" r_stop="710" r_length="110" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0113N10.1" gen_strand="-" ref_id="SGN-E619561" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>714</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0113N10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E619561" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44473" e_stop="44201"/>
          <exon e_start="42248" e_stop="42158"/>
          <exon e_start="41578" e_stop="41463"/>
          <exon e_start="41134" e_stop="41075"/>
          <exon e_start="40992" e_stop="40927"/>
          <exon e_start="39501" e_stop="39394"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACAACGCTACCTTCTCCATATTTCTTCGGTTTATCAAATCGATAATCATCAAAATAAAGTATGAAGTTTTAAAGTTTGTCAGATCACCAAATTATAGT-ACAGATTAG---CTCTAATTTGGATCCTTCACGTTTCACTCACCAATTTCATCTGATTCGCTTTTGGAGAAACGAAAAAAGGAGTGAAGAAGAAGAAGAGAAAAGGCAAAAGGCATAATGGGACAAGCTTTTCGCAAGCTATTTGATACTTTCTTCGGCAACTCTGAGATGAGGGTATGCCATTACTCCAACACCCTTTTCCTCTCCACCCCTTTTTTTTCTTTCTATTTTTGTATGCTCATATGTTATTGGAAATGATCACTTATGATTTTGCCAATTAGACTTTGTGGGGCTTCTTCTTAGCTCAGTGAAGATAATGGGTTTCACATACTTTCCTAATTATACTTCTCTGGGAATATCTACTTAATTTACATTATTACTCTATTATTTTTTTAAAAAAGTGTGAACTTTAAGTGACCTTGACTTTTGATTGGGTTTGAGTTAAGAGACTATAAGTTAAGCTATTTTGGGTTTTCCTGTTTTAGCTATTGGACTGTTGCCGTAATTAAGAATCTTGTCTACCTTTAGTAGTCTTAGCTTAATTAAGATTCTTGTCTGGATAAGGAATTTAGGGGTAGGAGTTATAAATAGTTGTGAATGTTTCTTATTTTTTAATTTTCTGTGTACATTGTAAAGGTTACTTATGATTATTGATATGAATATCATCCATTATTTGAAGATCTTCTGTTCCGAAGGTCTGAAGACGAGTTCCTCCATCCTGGACTATTTAATAGCTTCCACTCCGTCATTTAGGCTAGTGCTTGAAGTATTACATCTTGAGCATATAACACCATGGCTATATACTTTTTGAGGAAATTGAGTGATAAGCATGTTTAAGGCTGTTGAGGACGACTGTGATCTGCGGAGTTCAAGTTGGCTTTAAAGCTTCTTCATGCAGCTTACTGCAGTAGTCCTGGGTTTTTAAAAGTTAATTGTATATTGTGATTTTGCTCAACAGAGCAGCATTAGTTTTCACTGTCTTGTATATGATTCTTTGAACTGACTATCATATTTAGAGTACACCAACCTATGAAATGATATGTCCGTTGTATGTGAGTCGGAGAACTTGGAGTTGATTTCCTTGTGCATCCTTGATCCAACTATTGACTGTTAAAATTGTCATTGAGGGAGCACGTTGAGTAAGATGTATATGGAGAATAAAATTAAATAAAGGTGCCTTAAAAGAAACTTGTCTGTTGTAAAAAGATGCGCGATGCTCTCATAACAAATGGCAATTTTGTTCCTTTTTGGTCAATTTCCTTATATCAAGATTACTGGTCACTCTTTTCTTCATTTGCATATCACTGTTTTCTTCCTTTTTGGGGGCGTTGCGGGATTGCAGTTGGTATATTGATATCAAAATAGAAAAGAATATATACTGGAGCTATTTGGGGAAGAACCGGCGAAAATAAGCTACAAGTATCCATTCATGTCCTATGTAGGTGGTATAAAAAAAGTAAAGCCCCATTTCCTTCAATCTGATTCCTTCTCCTCTAGGGTTCCATTTCCGCATAGTGCAGAATTCGAGCTACCTAGTGGCTTGATATTGCTCAGTGACCTCCCAGTTCAATGAAAGGCCTCTAAAATGGCCATTGTTACATCAGTAGAGATAGAGATCAATAGAGACCTTCAATGTGTCAAAGATCTCATCTTTTCCATCATCCTTATTTTATCTTTTCAAATAGGTAATCATCATGAATTTGTATGAAGTACTATCTCACATATATCATGTCTGCCGTCTACTAATGTGGTGCCCACATTAGTCATTACTGACAGCATAGGGAGGGACTTGGGGAAGGGAACAGAGATTTTCTTGGAGGAAAAACCAATTTTCTTTCTGCAATGACTTTTTGCCTGCTCTGTAATGAAAATGATTACTACGAATGGTTGGGTTGTTGCGGCAGGTTTACGATGAAGTAATGCTTATTTCTCATCATCCATCCATCAGCTTTCATAGACCACTGCCTAATGTTCACTACACACCTTTTGTCTCTGATTATTTACTTAGTTGATTATTCTTCTTGTATGTGTAACTAATTATCTTACGCCTTTCACAATTACCATTTTCATTATTTTTTTAAATCTTATCCCTTTCTGCTGTGTTTACTATGATTTGCTTGGTATAGGTTGTGATGCTAGGGCTGGATGCGGCTGGGAAAACAACTATATTGTACAAGCTGCATATAGGAGAAGTTCTGTCTACAGTTCCTACTATTGGTATGCTATTGCTAAATTCTCGCTTGCAGTGTTGTGGCACTTAAATGTTTTGTTGGTTCAGTTATGAATCTGCTTGCATTGATATTGTTCTCGACTTGACAACTTTGAGTTCTTTTAATTACTTGTTGCTTGATGAATTTGAAGTTTCAACTAATTGCAATATGACCTATCAATATATTTACCAAAGAATGACCTATCAATGTCATACACAAAACTTTTTATTAAAAGAAGAATCACCGACATCTAAAAGATGTGGTAGCTTTGTTACAAAGAAGGAACTTTGAGAGGCCATGCTAGAGTTAGGTAAAAACATCATCAACCAAATCATTCTTTTTTTTTCTTCTAATTCTCTGACTGGATATAAGTCGTTTTATTCTCTTCCTAATTATGAGGCGCCATCTTATAAGGTCACATTATAGTGGTTGCAGAAGGCGAGTAAATTGGAATCTCAAATCTTGCAATGGAAATTGCTTCCGATTTGAAATATCGCATAGTTTTGCATATATATGTATTGAACACCTATGAGACCTAGTGAATACCTGTATATGTAATAGCTGATTGTATATGCATGGCATGCAGGTTTCAATGTAGAAAAAGTGCAGTACAAGAATGTGGTTTTTACTGTGTGGGACGTTGGAGGACAAGAGAAACTAAGACCACTTTGGAGGCATTATTTCAATAACACAGATGGACTGGTAAAACTATATATATTAGATTGTATCCGTGTCGACGAATATTCATCTACTGTTGATTTAAATTTTAGTGTCATTAGATTCCATAGGAAAAGATGAATCTTCCCTCTTTTTTTCTCATAGATGCTATTACCTAAAAGTCGCATAGGAAACTTAATTCGGGAAGGGTAATAAGAAATTTTAAATGGGAAAATGTGTTAATGTGATATACCATTTGAACCATCATTACTGAGTGCCTTAAAAATCAAACCTACATTTTCCGTTTTATGTGAACAGCCCCTGCCTTTGTAAAATGGTTATTTCTGTTTACTAAGTGCTTTGTTGTATACAGATTTACGTCGTTGACTCTTTGGATCGAGAGAGAATCGGAAAGGCAAAGCAAGAGTTTCAGGTTCTGTTTTTGAACTTCTATTTCTTTGCCCCAGGTACAATGGTCACTTACCCACCTAAATCTCATTCTTAATGTGTTTCAGGCAATCATTAGAGATCCATTTATGCTTAATGCTGTTATCTTGGTTTTCGCTAACAAGCAGGACATGGTAAGTTTGTGATATCAGTGGATTTGTGCATCGATAAAATGCAATAGTTGCTTGTTATCTATTGTTCTCTCTTTATGTACTGCTTTCTTAGTGCTGTTTTTTAAAATGTTAACTTTTTATCAAAAAAATAAAAGATACTCAAAGATTTTGCTGACCTTATTGTGCTTATTATCAGATCCTATGTCCTGACCTTTGTAAGCTTTGACATGCTGTTGTTTATTAAGCTTCCCTCTGTGTGATCCACAACTGATGCTTGATGTATTCTGGTACTTGATTAGTGAAAACAAAATGGTGTTGTGGAATCAATATCTCATGAGGTAGATGCTCATGTTGTTTACCTCACCGTCACCGAAGCATACTGATTCAAGAACTAATGAACAGACATACCTCCTTCCTGTTCACCTAGGAATAACTCCTTTTTCCTTTCCACCAAAACCTTACCAAAGTAGACCGCATTAATAATTTAACTATTTGAGATACTTAAATGCAGACAAGTCAGATATTCAGATTCCGTATTTTAGGAAATGGTTTGTTAGATAAAATGAAACGCGTGGAATTAGAATAAGATGACTGAAATGGATTGAGTACTATAACAGTATTATACAATCAGTGGATCCCACATAAAGTGAAATATCAGTTCTATGAAGTGGTTGCGAGACCAAGAGCTTTTTATGAAAGTGAAATTTCTGCCATGAAGGTCTAACATATTCATAAATTAAGTCTAATGAAGGTTTACTTGTTGTTGGGAGTGTTTCTAATATGGTTTGGGACTTGTGTAGAAATAAGTGTGGGATTAAAGAATCTCAAGCATTAGAAAACCTGCCATCTTTATTTTCAATAAAAGCCGTTATTGTTGCCGGAAGTCTTTTTTGTTTGATTAAAGTTGTGTAGGCCAGTATAAAGATAAGTGTGGATTTAGAGAACCTCTAATTGTTAGAACAATATGTATTCAATTTTGTCTTGTTTTCTAATTAAAAGTAAAGAATGAAATGGATTTGATTAAAGTGTAGTGGATGCAGACAAGTGTGAATTACATAATATATCCCAATTAAGTTTCTAATTACATTAATCCCTTAAAAATTTAAAAAAAATGTATACAATAATTGAAGCTCGGATACATAATATGTAGCTCAGATACATTAAATATTGGCTCGGATACGTTAATATGTAGCTCGAATACATTAAAAAATAGCTCAGATACATTAAATACTGGCTCGGATATATTAAAGAAATAAGGGATTTTGGAGATTTTTAAAAGGGGTGTACTTATGCAATATGTCCTATACATGGAGCTTAAGATAATGTAAAAGAAGCAAATCAATTGTCCCCTCAGTCCCCTTTCCATTTTCTCATCTCATGTTTGGTGGATAAATTTTTTATCATATTGATCCTCTTTGTTTATTTTTTCCCCTAATTATGGTCCAGAA-AGGAGCAATGACTCCAATGGAAGTGTGTGAAGGCCTCGGTCTTTATGATCTTAAAAACCGGAAAT-GGCATATACAAGGTGCATGTGCTCTTAAAGGGGATGGTCTA</genome_strand>
        <mrna_strand>AAAAACAACGCTACCTTCTCCATA---------TTTATCAAATCGATCATCATCAAA-TAAAGTATGAAGTTTTAAAGTTTCTCAGATCACCAAATTGTAGTAACAGATTAGCTTCTCTAACTTGGATCCTTCACGTTTCACTCTCCAATTTCATCTGATTCGCTTTTGGAGAAACGAAAAAAGGAGTGAAGAAGAAGAAGAGACAAGGCAAAAGGCGTAATGGGACAAGCTTTTCGCAAGCTATTTGATACTTTCTTCGGCAACTCTGAGATGAGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGATGCTAGGGCTGGATGCGGCTGGGAAAACAACTATATTGTACAAGCTGCATATAGGAGAAGTTCTGTCCACAGTTCCTACTATTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCAATGTAGAAAAAGTGCAGTACAAGAATGTGGTTTTTACTGTGTGGGACGTTGGAGGACAAGAGAAATTAAGGCCACTTTGGAGGCATTACTTCAATAACACAGATGGACTG........................................................................................................................................................................................................................................................................................................................................ATTTACGTCGTTGACTCTTTGGATCGAGAGAGAATCGGAAAGGCAAAGCAAGAGTTTCAG..................................................................................GCGATCATTAGAGATCCATTTATGCTTAATGCTGTCATCTTGGTTTTTGCTAACAAGCAGGACATG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGGAGCAATGACTCCAATGGAAGTGTGTGAAGGCCTCGGTCTTTATGATCTTAAAAACCGGAAATGGGCATATACAAGGTGCATGTGCTCTTAAAGGGGATGGTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E573665" ref_strand="+" ref_description="SGN-E573665 [33012]">
      <seq>cagaaaagttgcagaaacgaaggaaaaacaacgctaccttctccatatttcttcagtttatcaaatcgatcatcatcaataaagtatgaagttttaaagtttctcagatcaccaaattatagtagcagattagcctctcttacttggatccttcacgtttcactctccaatttcatctgattcgcttttggagaaacgaaaaaaggagtgaataagaagaagagacaaggcaaaaggtgtaatgggacaagcttttcgcaagctatttgatactttcttcggcaactctgagatgagggttgtgatgctagggctggatgcggctgggaaaacaactatattgtacaagctgcatataggagaagttctgtccacagttcctactattggtttcaatgtagaaaaagtgcagtacaagaatgtggtttttactgtgtgggacgttggaggacaagagaaattaaggccactttggaggcattatttcaatgacacagatggactgatttacgtcgttgactctttggatcgtgagagaatcggaaaggcaaagcaagagtttcaggcgatcattagagatccatttatgcttaatgctgtcatcttggttttcgctaacaagcaggacatgaaaggagcaatgactccaatggaagtgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0113N10.1" temp_strand="-" temp_description="C06SLm0113N10.1  AC219227.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0113N10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="44796" stop="39173"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44496" g_stop="44201" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="298" r_length="298" r_score="0.929"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44200" i_stop="42249" i_length="1952">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42248" g_stop="42158" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="389" r_length="91" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42157" i_stop="41579" i_length="579">
            <donor d_prob="0.661" d_score="0.98"/>
            <acceptor a_prob="0.930" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41578" g_stop="41463" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="505" r_length="116" r_score="0.974"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41462" i_stop="41135" i_length="328">
            <donor d_prob="0.679" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41134" g_stop="41075" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="506" r_stop="565" r_length="60" r_score="0.983"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41074" i_stop="40993" i_length="82">
            <donor d_prob="0.890" d_score="0.98"/>
            <acceptor a_prob="0.960" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="40992" g_stop="40927" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="566" r_stop="631" r_length="66" r_score="0.970"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="40926" i_stop="39502" i_length="1425">
            <donor d_prob="0.983" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="39501" g_stop="39473" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="632" r_stop="660" r_length="29" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0113N10.1" gen_strand="-" ref_id="SGN-E573665" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>658</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0113N10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E573665" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44496" e_stop="44201"/>
          <exon e_start="42248" e_stop="42158"/>
          <exon e_start="41578" e_stop="41463"/>
          <exon e_start="41134" e_stop="41075"/>
          <exon e_start="40992" e_stop="40927"/>
          <exon e_start="39501" e_stop="39473"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAAAAGTTGCAGAAACTAAGGAAAAACAACGCTACCTTCTCCATATTTCTTCGGTTTATCAAATCGATAATCATCAAAATAAAGTATGAAGTTTTAAAGTTTGTCAGATCACCAAATTATAGTA-CAGATTAG---CTCTAATTTGGATCCTTCACGTTTCACTCACCAATTTCATCTGATTCGCTTTTGGAGAAACGAAAAAAGGAGTGAAGAAGAAGAAGAGAAAAGGCAAAAGGCATAATGGGACAAGCTTTTCGCAAGCTATTTGATACTTTCTTCGGCAACTCTGAGATGAGGGTATGCCATTACTCCAACACCCTTTTCCTCTCCACCCCTTTTTTTTCTTTCTATTTTTGTATGCTCATATGTTATTGGAAATGATCACTTATGATTTTGCCAATTAGACTTTGTGGGGCTTCTTCTTAGCTCAGTGAAGATAATGGGTTTCACATACTTTCCTAATTATACTTCTCTGGGAATATCTACTTAATTTACATTATTACTCTATTATTTTTTTAAAAAAGTGTGAACTTTAAGTGACCTTGACTTTTGATTGGGTTTGAGTTAAGAGACTATAAGTTAAGCTATTTTGGGTTTTCCTGTTTTAGCTATTGGACTGTTGCCGTAATTAAGAATCTTGTCTACCTTTAGTAGTCTTAGCTTAATTAAGATTCTTGTCTGGATAAGGAATTTAGGGGTAGGAGTTATAAATAGTTGTGAATGTTTCTTATTTTTTAATTTTCTGTGTACATTGTAAAGGTTACTTATGATTATTGATATGAATATCATCCATTATTTGAAGATCTTCTGTTCCGAAGGTCTGAAGACGAGTTCCTCCATCCTGGACTATTTAATAGCTTCCACTCCGTCATTTAGGCTAGTGCTTGAAGTATTACATCTTGAGCATATAACACCATGGCTATATACTTTTTGAGGAAATTGAGTGATAAGCATGTTTAAGGCTGTTGAGGACGACTGTGATCTGCGGAGTTCAAGTTGGCTTTAAAGCTTCTTCATGCAGCTTACTGCAGTAGTCCTGGGTTTTTAAAAGTTAATTGTATATTGTGATTTTGCTCAACAGAGCAGCATTAGTTTTCACTGTCTTGTATATGATTCTTTGAACTGACTATCATATTTAGAGTACACCAACCTATGAAATGATATGTCCGTTGTATGTGAGTCGGAGAACTTGGAGTTGATTTCCTTGTGCATCCTTGATCCAACTATTGACTGTTAAAATTGTCATTGAGGGAGCACGTTGAGTAAGATGTATATGGAGAATAAAATTAAATAAAGGTGCCTTAAAAGAAACTTGTCTGTTGTAAAAAGATGCGCGATGCTCTCATAACAAATGGCAATTTTGTTCCTTTTTGGTCAATTTCCTTATATCAAGATTACTGGTCACTCTTTTCTTCATTTGCATATCACTGTTTTCTTCCTTTTTGGGGGCGTTGCGGGATTGCAGTTGGTATATTGATATCAAAATAGAAAAGAATATATACTGGAGCTATTTGGGGAAGAACCGGCGAAAATAAGCTACAAGTATCCATTCATGTCCTATGTAGGTGGTATAAAAAAAGTAAAGCCCCATTTCCTTCAATCTGATTCCTTCTCCTCTAGGGTTCCATTTCCGCATAGTGCAGAATTCGAGCTACCTAGTGGCTTGATATTGCTCAGTGACCTCCCAGTTCAATGAAAGGCCTCTAAAATGGCCATTGTTACATCAGTAGAGATAGAGATCAATAGAGACCTTCAATGTGTCAAAGATCTCATCTTTTCCATCATCCTTATTTTATCTTTTCAAATAGGTAATCATCATGAATTTGTATGAAGTACTATCTCACATATATCATGTCTGCCGTCTACTAATGTGGTGCCCACATTAGTCATTACTGACAGCATAGGGAGGGACTTGGGGAAGGGAACAGAGATTTTCTTGGAGGAAAAACCAATTTTCTTTCTGCAATGACTTTTTGCCTGCTCTGTAATGAAAATGATTACTACGAATGGTTGGGTTGTTGCGGCAGGTTTACGATGAAGTAATGCTTATTTCTCATCATCCATCCATCAGCTTTCATAGACCACTGCCTAATGTTCACTACACACCTTTTGTCTCTGATTATTTACTTAGTTGATTATTCTTCTTGTATGTGTAACTAATTATCTTACGCCTTTCACAATTACCATTTTCATTATTTTTTTAAATCTTATCCCTTTCTGCTGTGTTTACTATGATTTGCTTGGTATAGGTTGTGATGCTAGGGCTGGATGCGGCTGGGAAAACAACTATATTGTACAAGCTGCATATAGGAGAAGTTCTGTCTACAGTTCCTACTATTGGTATGCTATTGCTAAATTCTCGCTTGCAGTGTTGTGGCACTTAAATGTTTTGTTGGTTCAGTTATGAATCTGCTTGCATTGATATTGTTCTCGACTTGACAACTTTGAGTTCTTTTAATTACTTGTTGCTTGATGAATTTGAAGTTTCAACTAATTGCAATATGACCTATCAATATATTTACCAAAGAATGACCTATCAATGTCATACACAAAACTTTTTATTAAAAGAAGAATCACCGACATCTAAAAGATGTGGTAGCTTTGTTACAAAGAAGGAACTTTGAGAGGCCATGCTAGAGTTAGGTAAAAACATCATCAACCAAATCATTCTTTTTTTTTCTTCTAATTCTCTGACTGGATATAAGTCGTTTTATTCTCTTCCTAATTATGAGGCGCCATCTTATAAGGTCACATTATAGTGGTTGCAGAAGGCGAGTAAATTGGAATCTCAAATCTTGCAATGGAAATTGCTTCCGATTTGAAATATCGCATAGTTTTGCATATATATGTATTGAACACCTATGAGACCTAGTGAATACCTGTATATGTAATAGCTGATTGTATATGCATGGCATGCAGGTTTCAATGTAGAAAAAGTGCAGTACAAGAATGTGGTTTTTACTGTGTGGGACGTTGGAGGACAAGAGAAACTAAGACCACTTTGGAGGCATTATTTCAATAACACAGATGGACTGGTAAAACTATATATATTAGATTGTATCCGTGTCGACGAATATTCATCTACTGTTGATTTAAATTTTAGTGTCATTAGATTCCATAGGAAAAGATGAATCTTCCCTCTTTTTTTCTCATAGATGCTATTACCTAAAAGTCGCATAGGAAACTTAATTCGGGAAGGGTAATAAGAAATTTTAAATGGGAAAATGTGTTAATGTGATATACCATTTGAACCATCATTACTGAGTGCCTTAAAAATCAAACCTACATTTTCCGTTTTATGTGAACAGCCCCTGCCTTTGTAAAATGGTTATTTCTGTTTACTAAGTGCTTTGTTGTATACAGATTTACGTCGTTGACTCTTTGGATCGAGAGAGAATCGGAAAGGCAAAGCAAGAGTTTCAGGTTCTGTTTTTGAACTTCTATTTCTTTGCCCCAGGTACAATGGTCACTTACCCACCTAAATCTCATTCTTAATGTGTTTCAGGCAATCATTAGAGATCCATTTATGCTTAATGCTGTTATCTTGGTTTTCGCTAACAAGCAGGACATGGTAAGTTTGTGATATCAGTGGATTTGTGCATCGATAAAATGCAATAGTTGCTTGTTATCTATTGTTCTCTCTTTATGTACTGCTTTCTTAGTGCTGTTTTTTAAAATGTTAACTTTTTATCAAAAAAATAAAAGATACTCAAAGATTTTGCTGACCTTATTGTGCTTATTATCAGATCCTATGTCCTGACCTTTGTAAGCTTTGACATGCTGTTGTTTATTAAGCTTCCCTCTGTGTGATCCACAACTGATGCTTGATGTATTCTGGTACTTGATTAGTGAAAACAAAATGGTGTTGTGGAATCAATATCTCATGAGGTAGATGCTCATGTTGTTTACCTCACCGTCACCGAAGCATACTGATTCAAGAACTAATGAACAGACATACCTCCTTCCTGTTCACCTAGGAATAACTCCTTTTTCCTTTCCACCAAAACCTTACCAAAGTAGACCGCATTAATAATTTAACTATTTGAGATACTTAAATGCAGACAAGTCAGATATTCAGATTCCGTATTTTAGGAAATGGTTTGTTAGATAAAATGAAACGCGTGGAATTAGAATAAGATGACTGAAATGGATTGAGTACTATAACAGTATTATACAATCAGTGGATCCCACATAAAGTGAAATATCAGTTCTATGAAGTGGTTGCGAGACCAAGAGCTTTTTATGAAAGTGAAATTTCTGCCATGAAGGTCTAACATATTCATAAATTAAGTCTAATGAAGGTTTACTTGTTGTTGGGAGTGTTTCTAATATGGTTTGGGACTTGTGTAGAAATAAGTGTGGGATTAAAGAATCTCAAGCATTAGAAAACCTGCCATCTTTATTTTCAATAAAAGCCGTTATTGTTGCCGGAAGTCTTTTTTGTTTGATTAAAGTTGTGTAGGCCAGTATAAAGATAAGTGTGGATTTAGAGAACCTCTAATTGTTAGAACAATATGTATTCAATTTTGTCTTGTTTTCTAATTAAAAGTAAAGAATGAAATGGATTTGATTAAAGTGTAGTGGATGCAGACAAGTGTGAATTACATAATATATCCCAATTAAGTTTCTAATTACATTAATCCCTTAAAAATTTAAAAAAAATGTATACAATAATTGAAGCTCGGATACATAATATGTAGCTCAGATACATTAAATATTGGCTCGGATACGTTAATATGTAGCTCGAATACATTAAAAAATAGCTCAGATACATTAAATACTGGCTCGGATATATTAAAGAAATAAGGGATTTTGGAGATTTTTAAAAGGGGTGTACTTATGCAATATGTCCTATACATGGAGCTTAAGATAATGTAAAAGAAGCAAATCAATTGTCCCCTCAGTCCCCTTTCCATTTTCTCATCTCATGTTTGGTGGATAAATTTTTTATCATATTGATCCTCTTTGTTTATTTTTTCCCCTAATTATGGTCCAGAAAGGAGCAATGACTCCAATGGAAGTGTG</genome_strand>
        <mrna_strand>CAGAAAAGTTGCAGAAACGAAGGAAAAACAACGCTACCTTCTCCATATTTCTTCAGTTTATCAAATCGATCATCATC--AATAAAGTATGAAGTTTTAAAGTTTCTCAGATCACCAAATTATAGTAGCAGATTAGCCTCTCTTACTTGGATCCTTCACGTTTCACTCTCCAATTTCATCTGATTCGCTTTTGGAGAAACGAAAAAAGGAGTGAATAAGAAGAAGAGACAAGGCAAAAGGTGTAATGGGACAAGCTTTTCGCAAGCTATTTGATACTTTCTTCGGCAACTCTGAGATGAGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGATGCTAGGGCTGGATGCGGCTGGGAAAACAACTATATTGTACAAGCTGCATATAGGAGAAGTTCTGTCCACAGTTCCTACTATTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCAATGTAGAAAAAGTGCAGTACAAGAATGTGGTTTTTACTGTGTGGGACGTTGGAGGACAAGAGAAATTAAGGCCACTTTGGAGGCATTATTTCAATGACACAGATGGACTG........................................................................................................................................................................................................................................................................................................................................ATTTACGTCGTTGACTCTTTGGATCGTGAGAGAATCGGAAAGGCAAAGCAAGAGTTTCAG..................................................................................GCGATCATTAGAGATCCATTTATGCTTAATGCTGTCATCTTGGTTTTCGCTAACAAGCAGGACATG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGGAGCAATGACTCCAATGGAAGTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E688257" ref_strand="+" ref_description="SGN-E688257 [t3_tus_11_i06]">
      <seq>ctcataaaagttgcagaaactaaggaaaaacaacgctaccttctccatatttcttcggtttatcaaatcgataatcatcaaaataaagtatgaagttttaaagtttgtcagatcaccaaattatagtacagattagctctaatttggatccttcacgtttcactcaccaatttcatctgattcgcttttggagaaacgaaaaaaggagtgaagaataagaagagaaaaggcaaaaggcataatgggacaagcttttcgcaagctatttgatactttcttcggcaactctgacatgagggttgtgatgctagggctggatgcggctgggaaaacaactatattgtacaagctgcatataggagaagttctgtctacagttcctactattggtttcaatgtagaaaaagtgcagtacaagaatgtggtttttactgtgtgggacgttggaggacaagagaaactaagaccactttggaggcattatttcaataacacagatggactgatttacgtcgttgactctttggatcgagagagaatcggaaaggcaaagcaagagtttcaggcaatcattagagatccatttatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0113N10.1" temp_strand="-" temp_description="C06SLm0113N10.1  AC219227.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0113N10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="44798" stop="40667"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44498" g_stop="44201" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="298" r_length="298" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44200" i_stop="42249" i_length="1952">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42248" g_stop="42158" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="389" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42157" i_stop="41579" i_length="579">
            <donor d_prob="0.661" d_score="1.00"/>
            <acceptor a_prob="0.930" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41578" g_stop="41463" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="505" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41462" i_stop="41135" i_length="328">
            <donor d_prob="0.679" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41134" g_stop="41075" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="506" r_stop="565" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41074" i_stop="40993" i_length="82">
            <donor d_prob="0.890" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="40992" g_stop="40967" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="566" r_stop="591" r_length="26" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0113N10.1" gen_strand="-" ref_id="SGN-E688257" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>591</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0113N10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E688257" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44498" e_stop="44201"/>
          <exon e_start="42248" e_stop="42158"/>
          <exon e_start="41578" e_stop="41463"/>
          <exon e_start="41134" e_stop="41075"/>
          <exon e_start="40992" e_stop="40967"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAGAAAAGTTGCAGAAACTAAGGAAAAACAACGCTACCTTCTCCATATTTCTTCGGTTTATCAAATCGATAATCATCAAAATAAAGTATGAAGTTTTAAAGTTTGTCAGATCACCAAATTATAGTACAGATTAGCTCTAATTTGGATCCTTCACGTTTCACTCACCAATTTCATCTGATTCGCTTTTGGAGAAACGAAAAAAGGAGTGAAGAAGAAGAAGAGAAAAGGCAAAAGGCATAATGGGACAAGCTTTTCGCAAGCTATTTGATACTTTCTTCGGCAACTCTGAGATGAGGGTATGCCATTACTCCAACACCCTTTTCCTCTCCACCCCTTTTTTTTCTTTCTATTTTTGTATGCTCATATGTTATTGGAAATGATCACTTATGATTTTGCCAATTAGACTTTGTGGGGCTTCTTCTTAGCTCAGTGAAGATAATGGGTTTCACATACTTTCCTAATTATACTTCTCTGGGAATATCTACTTAATTTACATTATTACTCTATTATTTTTTTAAAAAAGTGTGAACTTTAAGTGACCTTGACTTTTGATTGGGTTTGAGTTAAGAGACTATAAGTTAAGCTATTTTGGGTTTTCCTGTTTTAGCTATTGGACTGTTGCCGTAATTAAGAATCTTGTCTACCTTTAGTAGTCTTAGCTTAATTAAGATTCTTGTCTGGATAAGGAATTTAGGGGTAGGAGTTATAAATAGTTGTGAATGTTTCTTATTTTTTAATTTTCTGTGTACATTGTAAAGGTTACTTATGATTATTGATATGAATATCATCCATTATTTGAAGATCTTCTGTTCCGAAGGTCTGAAGACGAGTTCCTCCATCCTGGACTATTTAATAGCTTCCACTCCGTCATTTAGGCTAGTGCTTGAAGTATTACATCTTGAGCATATAACACCATGGCTATATACTTTTTGAGGAAATTGAGTGATAAGCATGTTTAAGGCTGTTGAGGACGACTGTGATCTGCGGAGTTCAAGTTGGCTTTAAAGCTTCTTCATGCAGCTTACTGCAGTAGTCCTGGGTTTTTAAAAGTTAATTGTATATTGTGATTTTGCTCAACAGAGCAGCATTAGTTTTCACTGTCTTGTATATGATTCTTTGAACTGACTATCATATTTAGAGTACACCAACCTATGAAATGATATGTCCGTTGTATGTGAGTCGGAGAACTTGGAGTTGATTTCCTTGTGCATCCTTGATCCAACTATTGACTGTTAAAATTGTCATTGAGGGAGCACGTTGAGTAAGATGTATATGGAGAATAAAATTAAATAAAGGTGCCTTAAAAGAAACTTGTCTGTTGTAAAAAGATGCGCGATGCTCTCATAACAAATGGCAATTTTGTTCCTTTTTGGTCAATTTCCTTATATCAAGATTACTGGTCACTCTTTTCTTCATTTGCATATCACTGTTTTCTTCCTTTTTGGGGGCGTTGCGGGATTGCAGTTGGTATATTGATATCAAAATAGAAAAGAATATATACTGGAGCTATTTGGGGAAGAACCGGCGAAAATAAGCTACAAGTATCCATTCATGTCCTATGTAGGTGGTATAAAAAAAGTAAAGCCCCATTTCCTTCAATCTGATTCCTTCTCCTCTAGGGTTCCATTTCCGCATAGTGCAGAATTCGAGCTACCTAGTGGCTTGATATTGCTCAGTGACCTCCCAGTTCAATGAAAGGCCTCTAAAATGGCCATTGTTACATCAGTAGAGATAGAGATCAATAGAGACCTTCAATGTGTCAAAGATCTCATCTTTTCCATCATCCTTATTTTATCTTTTCAAATAGGTAATCATCATGAATTTGTATGAAGTACTATCTCACATATATCATGTCTGCCGTCTACTAATGTGGTGCCCACATTAGTCATTACTGACAGCATAGGGAGGGACTTGGGGAAGGGAACAGAGATTTTCTTGGAGGAAAAACCAATTTTCTTTCTGCAATGACTTTTTGCCTGCTCTGTAATGAAAATGATTACTACGAATGGTTGGGTTGTTGCGGCAGGTTTACGATGAAGTAATGCTTATTTCTCATCATCCATCCATCAGCTTTCATAGACCACTGCCTAATGTTCACTACACACCTTTTGTCTCTGATTATTTACTTAGTTGATTATTCTTCTTGTATGTGTAACTAATTATCTTACGCCTTTCACAATTACCATTTTCATTATTTTTTTAAATCTTATCCCTTTCTGCTGTGTTTACTATGATTTGCTTGGTATAGGTTGTGATGCTAGGGCTGGATGCGGCTGGGAAAACAACTATATTGTACAAGCTGCATATAGGAGAAGTTCTGTCTACAGTTCCTACTATTGGTATGCTATTGCTAAATTCTCGCTTGCAGTGTTGTGGCACTTAAATGTTTTGTTGGTTCAGTTATGAATCTGCTTGCATTGATATTGTTCTCGACTTGACAACTTTGAGTTCTTTTAATTACTTGTTGCTTGATGAATTTGAAGTTTCAACTAATTGCAATATGACCTATCAATATATTTACCAAAGAATGACCTATCAATGTCATACACAAAACTTTTTATTAAAAGAAGAATCACCGACATCTAAAAGATGTGGTAGCTTTGTTACAAAGAAGGAACTTTGAGAGGCCATGCTAGAGTTAGGTAAAAACATCATCAACCAAATCATTCTTTTTTTTTCTTCTAATTCTCTGACTGGATATAAGTCGTTTTATTCTCTTCCTAATTATGAGGCGCCATCTTATAAGGTCACATTATAGTGGTTGCAGAAGGCGAGTAAATTGGAATCTCAAATCTTGCAATGGAAATTGCTTCCGATTTGAAATATCGCATAGTTTTGCATATATATGTATTGAACACCTATGAGACCTAGTGAATACCTGTATATGTAATAGCTGATTGTATATGCATGGCATGCAGGTTTCAATGTAGAAAAAGTGCAGTACAAGAATGTGGTTTTTACTGTGTGGGACGTTGGAGGACAAGAGAAACTAAGACCACTTTGGAGGCATTATTTCAATAACACAGATGGACTGGTAAAACTATATATATTAGATTGTATCCGTGTCGACGAATATTCATCTACTGTTGATTTAAATTTTAGTGTCATTAGATTCCATAGGAAAAGATGAATCTTCCCTCTTTTTTTCTCATAGATGCTATTACCTAAAAGTCGCATAGGAAACTTAATTCGGGAAGGGTAATAAGAAATTTTAAATGGGAAAATGTGTTAATGTGATATACCATTTGAACCATCATTACTGAGTGCCTTAAAAATCAAACCTACATTTTCCGTTTTATGTGAACAGCCCCTGCCTTTGTAAAATGGTTATTTCTGTTTACTAAGTGCTTTGTTGTATACAGATTTACGTCGTTGACTCTTTGGATCGAGAGAGAATCGGAAAGGCAAAGCAAGAGTTTCAGGTTCTGTTTTTGAACTTCTATTTCTTTGCCCCAGGTACAATGGTCACTTACCCACCTAAATCTCATTCTTAATGTGTTTCAGGCAATCATTAGAGATCCATTTATGCT</genome_strand>
        <mrna_strand>CTCATAAAAGTTGCAGAAACTAAGGAAAAACAACGCTACCTTCTCCATATTTCTTCGGTTTATCAAATCGATAATCATCAAAATAAAGTATGAAGTTTTAAAGTTTGTCAGATCACCAAATTATAGTACAGATTAGCTCTAATTTGGATCCTTCACGTTTCACTCACCAATTTCATCTGATTCGCTTTTGGAGAAACGAAAAAAGGAGTGAAGAATAAGAAGAGAAAAGGCAAAAGGCATAATGGGACAAGCTTTTCGCAAGCTATTTGATACTTTCTTCGGCAACTCTGACATGAGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGATGCTAGGGCTGGATGCGGCTGGGAAAACAACTATATTGTACAAGCTGCATATAGGAGAAGTTCTGTCTACAGTTCCTACTATTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCAATGTAGAAAAAGTGCAGTACAAGAATGTGGTTTTTACTGTGTGGGACGTTGGAGGACAAGAGAAACTAAGACCACTTTGGAGGCATTATTTCAATAACACAGATGGACTG........................................................................................................................................................................................................................................................................................................................................ATTTACGTCGTTGACTCTTTGGATCGAGAGAGAATCGGAAAGGCAAAGCAAGAGTTTCAG..................................................................................GCAATCATTAGAGATCCATTTATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E550622" ref_strand="+" ref_description="SGN-E550622 [TUS-11-I6]">
      <seq>ctcataaaagttgcagaaactaaggaaaaacaacgctaccttctccatatttcttcggtttatcaaatcgataatcatcaaaataaagtatgaagttttaaagtttgtcagatcaccaaattatagtacagattagctctaatttggatccttcacgtttcactcaccaatttcatctgattcgcttttggagaaacgaaaaaaggagtgaagaataagaagagaaaaggcaaaaggcataatgggacaagcttttcgcaagctatttgatactttcttcggcaactctgagatgagggttgtgatgctagggctggatgcggctgggaaaacaactatattgtacaagctgcatataggagaagttctgtctacagttcctactattggtttcaatgtagaaaaagtgcagtacaagaatgtggtttttactgtgtgggacgttggaggacaagagaaactaagaccactttggaggcattatttcaataacacagatggactgatttacgtcgttgactctttggatcgagagagaatcggaaaggcaaagcaagagtttcaggcaatcattagagatccatttatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0113N10.1" temp_strand="-" temp_description="C06SLm0113N10.1  AC219227.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0113N10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="44798" stop="40667"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44498" g_stop="44201" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="298" r_length="298" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44200" i_stop="42249" i_length="1952">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42248" g_stop="42158" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="389" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42157" i_stop="41579" i_length="579">
            <donor d_prob="0.661" d_score="1.00"/>
            <acceptor a_prob="0.930" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41578" g_stop="41463" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="505" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41462" i_stop="41135" i_length="328">
            <donor d_prob="0.679" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41134" g_stop="41075" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="506" r_stop="565" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41074" i_stop="40993" i_length="82">
            <donor d_prob="0.890" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="40992" g_stop="40967" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="566" r_stop="591" r_length="26" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0113N10.1" gen_strand="-" ref_id="SGN-E550622" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>591</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0113N10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E550622" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44498" e_stop="44201"/>
          <exon e_start="42248" e_stop="42158"/>
          <exon e_start="41578" e_stop="41463"/>
          <exon e_start="41134" e_stop="41075"/>
          <exon e_start="40992" e_stop="40967"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAGAAAAGTTGCAGAAACTAAGGAAAAACAACGCTACCTTCTCCATATTTCTTCGGTTTATCAAATCGATAATCATCAAAATAAAGTATGAAGTTTTAAAGTTTGTCAGATCACCAAATTATAGTACAGATTAGCTCTAATTTGGATCCTTCACGTTTCACTCACCAATTTCATCTGATTCGCTTTTGGAGAAACGAAAAAAGGAGTGAAGAAGAAGAAGAGAAAAGGCAAAAGGCATAATGGGACAAGCTTTTCGCAAGCTATTTGATACTTTCTTCGGCAACTCTGAGATGAGGGTATGCCATTACTCCAACACCCTTTTCCTCTCCACCCCTTTTTTTTCTTTCTATTTTTGTATGCTCATATGTTATTGGAAATGATCACTTATGATTTTGCCAATTAGACTTTGTGGGGCTTCTTCTTAGCTCAGTGAAGATAATGGGTTTCACATACTTTCCTAATTATACTTCTCTGGGAATATCTACTTAATTTACATTATTACTCTATTATTTTTTTAAAAAAGTGTGAACTTTAAGTGACCTTGACTTTTGATTGGGTTTGAGTTAAGAGACTATAAGTTAAGCTATTTTGGGTTTTCCTGTTTTAGCTATTGGACTGTTGCCGTAATTAAGAATCTTGTCTACCTTTAGTAGTCTTAGCTTAATTAAGATTCTTGTCTGGATAAGGAATTTAGGGGTAGGAGTTATAAATAGTTGTGAATGTTTCTTATTTTTTAATTTTCTGTGTACATTGTAAAGGTTACTTATGATTATTGATATGAATATCATCCATTATTTGAAGATCTTCTGTTCCGAAGGTCTGAAGACGAGTTCCTCCATCCTGGACTATTTAATAGCTTCCACTCCGTCATTTAGGCTAGTGCTTGAAGTATTACATCTTGAGCATATAACACCATGGCTATATACTTTTTGAGGAAATTGAGTGATAAGCATGTTTAAGGCTGTTGAGGACGACTGTGATCTGCGGAGTTCAAGTTGGCTTTAAAGCTTCTTCATGCAGCTTACTGCAGTAGTCCTGGGTTTTTAAAAGTTAATTGTATATTGTGATTTTGCTCAACAGAGCAGCATTAGTTTTCACTGTCTTGTATATGATTCTTTGAACTGACTATCATATTTAGAGTACACCAACCTATGAAATGATATGTCCGTTGTATGTGAGTCGGAGAACTTGGAGTTGATTTCCTTGTGCATCCTTGATCCAACTATTGACTGTTAAAATTGTCATTGAGGGAGCACGTTGAGTAAGATGTATATGGAGAATAAAATTAAATAAAGGTGCCTTAAAAGAAACTTGTCTGTTGTAAAAAGATGCGCGATGCTCTCATAACAAATGGCAATTTTGTTCCTTTTTGGTCAATTTCCTTATATCAAGATTACTGGTCACTCTTTTCTTCATTTGCATATCACTGTTTTCTTCCTTTTTGGGGGCGTTGCGGGATTGCAGTTGGTATATTGATATCAAAATAGAAAAGAATATATACTGGAGCTATTTGGGGAAGAACCGGCGAAAATAAGCTACAAGTATCCATTCATGTCCTATGTAGGTGGTATAAAAAAAGTAAAGCCCCATTTCCTTCAATCTGATTCCTTCTCCTCTAGGGTTCCATTTCCGCATAGTGCAGAATTCGAGCTACCTAGTGGCTTGATATTGCTCAGTGACCTCCCAGTTCAATGAAAGGCCTCTAAAATGGCCATTGTTACATCAGTAGAGATAGAGATCAATAGAGACCTTCAATGTGTCAAAGATCTCATCTTTTCCATCATCCTTATTTTATCTTTTCAAATAGGTAATCATCATGAATTTGTATGAAGTACTATCTCACATATATCATGTCTGCCGTCTACTAATGTGGTGCCCACATTAGTCATTACTGACAGCATAGGGAGGGACTTGGGGAAGGGAACAGAGATTTTCTTGGAGGAAAAACCAATTTTCTTTCTGCAATGACTTTTTGCCTGCTCTGTAATGAAAATGATTACTACGAATGGTTGGGTTGTTGCGGCAGGTTTACGATGAAGTAATGCTTATTTCTCATCATCCATCCATCAGCTTTCATAGACCACTGCCTAATGTTCACTACACACCTTTTGTCTCTGATTATTTACTTAGTTGATTATTCTTCTTGTATGTGTAACTAATTATCTTACGCCTTTCACAATTACCATTTTCATTATTTTTTTAAATCTTATCCCTTTCTGCTGTGTTTACTATGATTTGCTTGGTATAGGTTGTGATGCTAGGGCTGGATGCGGCTGGGAAAACAACTATATTGTACAAGCTGCATATAGGAGAAGTTCTGTCTACAGTTCCTACTATTGGTATGCTATTGCTAAATTCTCGCTTGCAGTGTTGTGGCACTTAAATGTTTTGTTGGTTCAGTTATGAATCTGCTTGCATTGATATTGTTCTCGACTTGACAACTTTGAGTTCTTTTAATTACTTGTTGCTTGATGAATTTGAAGTTTCAACTAATTGCAATATGACCTATCAATATATTTACCAAAGAATGACCTATCAATGTCATACACAAAACTTTTTATTAAAAGAAGAATCACCGACATCTAAAAGATGTGGTAGCTTTGTTACAAAGAAGGAACTTTGAGAGGCCATGCTAGAGTTAGGTAAAAACATCATCAACCAAATCATTCTTTTTTTTTCTTCTAATTCTCTGACTGGATATAAGTCGTTTTATTCTCTTCCTAATTATGAGGCGCCATCTTATAAGGTCACATTATAGTGGTTGCAGAAGGCGAGTAAATTGGAATCTCAAATCTTGCAATGGAAATTGCTTCCGATTTGAAATATCGCATAGTTTTGCATATATATGTATTGAACACCTATGAGACCTAGTGAATACCTGTATATGTAATAGCTGATTGTATATGCATGGCATGCAGGTTTCAATGTAGAAAAAGTGCAGTACAAGAATGTGGTTTTTACTGTGTGGGACGTTGGAGGACAAGAGAAACTAAGACCACTTTGGAGGCATTATTTCAATAACACAGATGGACTGGTAAAACTATATATATTAGATTGTATCCGTGTCGACGAATATTCATCTACTGTTGATTTAAATTTTAGTGTCATTAGATTCCATAGGAAAAGATGAATCTTCCCTCTTTTTTTCTCATAGATGCTATTACCTAAAAGTCGCATAGGAAACTTAATTCGGGAAGGGTAATAAGAAATTTTAAATGGGAAAATGTGTTAATGTGATATACCATTTGAACCATCATTACTGAGTGCCTTAAAAATCAAACCTACATTTTCCGTTTTATGTGAACAGCCCCTGCCTTTGTAAAATGGTTATTTCTGTTTACTAAGTGCTTTGTTGTATACAGATTTACGTCGTTGACTCTTTGGATCGAGAGAGAATCGGAAAGGCAAAGCAAGAGTTTCAGGTTCTGTTTTTGAACTTCTATTTCTTTGCCCCAGGTACAATGGTCACTTACCCACCTAAATCTCATTCTTAATGTGTTTCAGGCAATCATTAGAGATCCATTTATGCT</genome_strand>
        <mrna_strand>CTCATAAAAGTTGCAGAAACTAAGGAAAAACAACGCTACCTTCTCCATATTTCTTCGGTTTATCAAATCGATAATCATCAAAATAAAGTATGAAGTTTTAAAGTTTGTCAGATCACCAAATTATAGTACAGATTAGCTCTAATTTGGATCCTTCACGTTTCACTCACCAATTTCATCTGATTCGCTTTTGGAGAAACGAAAAAAGGAGTGAAGAATAAGAAGAGAAAAGGCAAAAGGCATAATGGGACAAGCTTTTCGCAAGCTATTTGATACTTTCTTCGGCAACTCTGAGATGAGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGATGCTAGGGCTGGATGCGGCTGGGAAAACAACTATATTGTACAAGCTGCATATAGGAGAAGTTCTGTCTACAGTTCCTACTATTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCAATGTAGAAAAAGTGCAGTACAAGAATGTGGTTTTTACTGTGTGGGACGTTGGAGGACAAGAGAAACTAAGACCACTTTGGAGGCATTATTTCAATAACACAGATGGACTG........................................................................................................................................................................................................................................................................................................................................ATTTACGTCGTTGACTCTTTGGATCGAGAGAGAATCGGAAAGGCAAAGCAAGAGTTTCAG..................................................................................GCAATCATTAGAGATCCATTTATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E272248" ref_strand="+" ref_description="SGN-E272248 [cLEM-19-I16]">
      <seq>tcagaaaagttgcagaaactaaggaaaaacaacgctaccttctccatatttcttcggtttatcaaatcgataatcatcaaaataaagtatgaagttttaaagtttgtcagatcaccaaattatagtacagattagctctaatttggatccttcacgtttcactcaccaatttcatctgattcgcttttggagaaacgaaaaaaggagtgaagaagaagaagagaaaaggcgaaaggcataatgggacaagcttttcgcaagctatttgatactttcttcggcaactctgagatgagggttgtgatgctagggctggatgcggctgggaaaacaactatattgtacaagctgcatataggagaagttctgtctacagttcctactattggtttcaatgtagaaaaagtgcagtacaagaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0113N10.1" temp_strand="-" temp_description="C06SLm0113N10.1  AC219227.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0113N10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="44797" stop="41246"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44497" g_stop="44201" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="297" r_length="297" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44200" i_stop="42249" i_length="1952">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42248" g_stop="42158" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="388" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42157" i_stop="41579" i_length="579">
            <donor d_prob="0.661" d_score="1.00"/>
            <acceptor a_prob="0.930" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41578" g_stop="41546" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="421" r_length="33" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0113N10.1" gen_strand="-" ref_id="SGN-E272248" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>421</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0113N10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E272248" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44497" e_stop="44201"/>
          <exon e_start="42248" e_stop="42158"/>
          <exon e_start="41578" e_stop="41546"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGAAAAGTTGCAGAAACTAAGGAAAAACAACGCTACCTTCTCCATATTTCTTCGGTTTATCAAATCGATAATCATCAAAATAAAGTATGAAGTTTTAAAGTTTGTCAGATCACCAAATTATAGTACAGATTAGCTCTAATTTGGATCCTTCACGTTTCACTCACCAATTTCATCTGATTCGCTTTTGGAGAAACGAAAAAAGGAGTGAAGAAGAAGAAGAGAAAAGGCAAAAGGCATAATGGGACAAGCTTTTCGCAAGCTATTTGATACTTTCTTCGGCAACTCTGAGATGAGGGTATGCCATTACTCCAACACCCTTTTCCTCTCCACCCCTTTTTTTTCTTTCTATTTTTGTATGCTCATATGTTATTGGAAATGATCACTTATGATTTTGCCAATTAGACTTTGTGGGGCTTCTTCTTAGCTCAGTGAAGATAATGGGTTTCACATACTTTCCTAATTATACTTCTCTGGGAATATCTACTTAATTTACATTATTACTCTATTATTTTTTTAAAAAAGTGTGAACTTTAAGTGACCTTGACTTTTGATTGGGTTTGAGTTAAGAGACTATAAGTTAAGCTATTTTGGGTTTTCCTGTTTTAGCTATTGGACTGTTGCCGTAATTAAGAATCTTGTCTACCTTTAGTAGTCTTAGCTTAATTAAGATTCTTGTCTGGATAAGGAATTTAGGGGTAGGAGTTATAAATAGTTGTGAATGTTTCTTATTTTTTAATTTTCTGTGTACATTGTAAAGGTTACTTATGATTATTGATATGAATATCATCCATTATTTGAAGATCTTCTGTTCCGAAGGTCTGAAGACGAGTTCCTCCATCCTGGACTATTTAATAGCTTCCACTCCGTCATTTAGGCTAGTGCTTGAAGTATTACATCTTGAGCATATAACACCATGGCTATATACTTTTTGAGGAAATTGAGTGATAAGCATGTTTAAGGCTGTTGAGGACGACTGTGATCTGCGGAGTTCAAGTTGGCTTTAAAGCTTCTTCATGCAGCTTACTGCAGTAGTCCTGGGTTTTTAAAAGTTAATTGTATATTGTGATTTTGCTCAACAGAGCAGCATTAGTTTTCACTGTCTTGTATATGATTCTTTGAACTGACTATCATATTTAGAGTACACCAACCTATGAAATGATATGTCCGTTGTATGTGAGTCGGAGAACTTGGAGTTGATTTCCTTGTGCATCCTTGATCCAACTATTGACTGTTAAAATTGTCATTGAGGGAGCACGTTGAGTAAGATGTATATGGAGAATAAAATTAAATAAAGGTGCCTTAAAAGAAACTTGTCTGTTGTAAAAAGATGCGCGATGCTCTCATAACAAATGGCAATTTTGTTCCTTTTTGGTCAATTTCCTTATATCAAGATTACTGGTCACTCTTTTCTTCATTTGCATATCACTGTTTTCTTCCTTTTTGGGGGCGTTGCGGGATTGCAGTTGGTATATTGATATCAAAATAGAAAAGAATATATACTGGAGCTATTTGGGGAAGAACCGGCGAAAATAAGCTACAAGTATCCATTCATGTCCTATGTAGGTGGTATAAAAAAAGTAAAGCCCCATTTCCTTCAATCTGATTCCTTCTCCTCTAGGGTTCCATTTCCGCATAGTGCAGAATTCGAGCTACCTAGTGGCTTGATATTGCTCAGTGACCTCCCAGTTCAATGAAAGGCCTCTAAAATGGCCATTGTTACATCAGTAGAGATAGAGATCAATAGAGACCTTCAATGTGTCAAAGATCTCATCTTTTCCATCATCCTTATTTTATCTTTTCAAATAGGTAATCATCATGAATTTGTATGAAGTACTATCTCACATATATCATGTCTGCCGTCTACTAATGTGGTGCCCACATTAGTCATTACTGACAGCATAGGGAGGGACTTGGGGAAGGGAACAGAGATTTTCTTGGAGGAAAAACCAATTTTCTTTCTGCAATGACTTTTTGCCTGCTCTGTAATGAAAATGATTACTACGAATGGTTGGGTTGTTGCGGCAGGTTTACGATGAAGTAATGCTTATTTCTCATCATCCATCCATCAGCTTTCATAGACCACTGCCTAATGTTCACTACACACCTTTTGTCTCTGATTATTTACTTAGTTGATTATTCTTCTTGTATGTGTAACTAATTATCTTACGCCTTTCACAATTACCATTTTCATTATTTTTTTAAATCTTATCCCTTTCTGCTGTGTTTACTATGATTTGCTTGGTATAGGTTGTGATGCTAGGGCTGGATGCGGCTGGGAAAACAACTATATTGTACAAGCTGCATATAGGAGAAGTTCTGTCTACAGTTCCTACTATTGGTATGCTATTGCTAAATTCTCGCTTGCAGTGTTGTGGCACTTAAATGTTTTGTTGGTTCAGTTATGAATCTGCTTGCATTGATATTGTTCTCGACTTGACAACTTTGAGTTCTTTTAATTACTTGTTGCTTGATGAATTTGAAGTTTCAACTAATTGCAATATGACCTATCAATATATTTACCAAAGAATGACCTATCAATGTCATACACAAAACTTTTTATTAAAAGAAGAATCACCGACATCTAAAAGATGTGGTAGCTTTGTTACAAAGAAGGAACTTTGAGAGGCCATGCTAGAGTTAGGTAAAAACATCATCAACCAAATCATTCTTTTTTTTTCTTCTAATTCTCTGACTGGATATAAGTCGTTTTATTCTCTTCCTAATTATGAGGCGCCATCTTATAAGGTCACATTATAGTGGTTGCAGAAGGCGAGTAAATTGGAATCTCAAATCTTGCAATGGAAATTGCTTCCGATTTGAAATATCGCATAGTTTTGCATATATATGTATTGAACACCTATGAGACCTAGTGAATACCTGTATATGTAATAGCTGATTGTATATGCATGGCATGCAGGTTTCAATGTAGAAAAAGTGCAGTACAAGAATG</genome_strand>
        <mrna_strand>TCAGAAAAGTTGCAGAAACTAAGGAAAAACAACGCTACCTTCTCCATATTTCTTCGGTTTATCAAATCGATAATCATCAAAATAAAGTATGAAGTTTTAAAGTTTGTCAGATCACCAAATTATAGTACAGATTAGCTCTAATTTGGATCCTTCACGTTTCACTCACCAATTTCATCTGATTCGCTTTTGGAGAAACGAAAAAAGGAGTGAAGAAGAAGAAGAGAAAAGGCGAAAGGCATAATGGGACAAGCTTTTCGCAAGCTATTTGATACTTTCTTCGGCAACTCTGAGATGAGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGATGCTAGGGCTGGATGCGGCTGGGAAAACAACTATATTGTACAAGCTGCATATAGGAGAAGTTCTGTCTACAGTTCCTACTATTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCAATGTAGAAAAAGTGCAGTACAAGAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E335740" ref_strand="+" ref_description="SGN-E335740 [cTOE-8-J1]">
      <seq>aaagttgcagaaactaaggaaaaacaacgctaccttctccatatttcttcggtttatcaaatcgataatcatcaaaataaagtatgaagttttaaagtttgtcagatcaccaaattatagtacagattagctctaatttggatccttcacgtttcactcaccaatttcatctgattcgcttttggagaaacgaaaaaaggagtgaagaagaagaagagaaaaggcaaaaggcataatgggacaagcttttcgcaagctatttgatactttcttcggcaactctgagatgagggttgtgatgctagggctggatgcggctgggaaaacaactatattgtacaagctgcatataggagaagttctgtctacagttcctacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0113N10.1" temp_strand="-" temp_description="C06SLm0113N10.1  AC219227.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0113N10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="44792" stop="41861"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44492" g_stop="44201" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="292" r_length="292" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44200" i_stop="42249" i_length="1952">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42248" g_stop="42161" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="380" r_length="88" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0113N10.1" gen_strand="-" ref_id="SGN-E335740" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>380</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0113N10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E335740" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44492" e_stop="44201"/>
          <exon e_start="42248" e_stop="42161"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGTTGCAGAAACTAAGGAAAAACAACGCTACCTTCTCCATATTTCTTCGGTTTATCAAATCGATAATCATCAAAATAAAGTATGAAGTTTTAAAGTTTGTCAGATCACCAAATTATAGTACAGATTAGCTCTAATTTGGATCCTTCACGTTTCACTCACCAATTTCATCTGATTCGCTTTTGGAGAAACGAAAAAAGGAGTGAAGAAGAAGAAGAGAAAAGGCAAAAGGCATAATGGGACAAGCTTTTCGCAAGCTATTTGATACTTTCTTCGGCAACTCTGAGATGAGGGTATGCCATTACTCCAACACCCTTTTCCTCTCCACCCCTTTTTTTTCTTTCTATTTTTGTATGCTCATATGTTATTGGAAATGATCACTTATGATTTTGCCAATTAGACTTTGTGGGGCTTCTTCTTAGCTCAGTGAAGATAATGGGTTTCACATACTTTCCTAATTATACTTCTCTGGGAATATCTACTTAATTTACATTATTACTCTATTATTTTTTTAAAAAAGTGTGAACTTTAAGTGACCTTGACTTTTGATTGGGTTTGAGTTAAGAGACTATAAGTTAAGCTATTTTGGGTTTTCCTGTTTTAGCTATTGGACTGTTGCCGTAATTAAGAATCTTGTCTACCTTTAGTAGTCTTAGCTTAATTAAGATTCTTGTCTGGATAAGGAATTTAGGGGTAGGAGTTATAAATAGTTGTGAATGTTTCTTATTTTTTAATTTTCTGTGTACATTGTAAAGGTTACTTATGATTATTGATATGAATATCATCCATTATTTGAAGATCTTCTGTTCCGAAGGTCTGAAGACGAGTTCCTCCATCCTGGACTATTTAATAGCTTCCACTCCGTCATTTAGGCTAGTGCTTGAAGTATTACATCTTGAGCATATAACACCATGGCTATATACTTTTTGAGGAAATTGAGTGATAAGCATGTTTAAGGCTGTTGAGGACGACTGTGATCTGCGGAGTTCAAGTTGGCTTTAAAGCTTCTTCATGCAGCTTACTGCAGTAGTCCTGGGTTTTTAAAAGTTAATTGTATATTGTGATTTTGCTCAACAGAGCAGCATTAGTTTTCACTGTCTTGTATATGATTCTTTGAACTGACTATCATATTTAGAGTACACCAACCTATGAAATGATATGTCCGTTGTATGTGAGTCGGAGAACTTGGAGTTGATTTCCTTGTGCATCCTTGATCCAACTATTGACTGTTAAAATTGTCATTGAGGGAGCACGTTGAGTAAGATGTATATGGAGAATAAAATTAAATAAAGGTGCCTTAAAAGAAACTTGTCTGTTGTAAAAAGATGCGCGATGCTCTCATAACAAATGGCAATTTTGTTCCTTTTTGGTCAATTTCCTTATATCAAGATTACTGGTCACTCTTTTCTTCATTTGCATATCACTGTTTTCTTCCTTTTTGGGGGCGTTGCGGGATTGCAGTTGGTATATTGATATCAAAATAGAAAAGAATATATACTGGAGCTATTTGGGGAAGAACCGGCGAAAATAAGCTACAAGTATCCATTCATGTCCTATGTAGGTGGTATAAAAAAAGTAAAGCCCCATTTCCTTCAATCTGATTCCTTCTCCTCTAGGGTTCCATTTCCGCATAGTGCAGAATTCGAGCTACCTAGTGGCTTGATATTGCTCAGTGACCTCCCAGTTCAATGAAAGGCCTCTAAAATGGCCATTGTTACATCAGTAGAGATAGAGATCAATAGAGACCTTCAATGTGTCAAAGATCTCATCTTTTCCATCATCCTTATTTTATCTTTTCAAATAGGTAATCATCATGAATTTGTATGAAGTACTATCTCACATATATCATGTCTGCCGTCTACTAATGTGGTGCCCACATTAGTCATTACTGACAGCATAGGGAGGGACTTGGGGAAGGGAACAGAGATTTTCTTGGAGGAAAAACCAATTTTCTTTCTGCAATGACTTTTTGCCTGCTCTGTAATGAAAATGATTACTACGAATGGTTGGGTTGTTGCGGCAGGTTTACGATGAAGTAATGCTTATTTCTCATCATCCATCCATCAGCTTTCATAGACCACTGCCTAATGTTCACTACACACCTTTTGTCTCTGATTATTTACTTAGTTGATTATTCTTCTTGTATGTGTAACTAATTATCTTACGCCTTTCACAATTACCATTTTCATTATTTTTTTAAATCTTATCCCTTTCTGCTGTGTTTACTATGATTTGCTTGGTATAGGTTGTGATGCTAGGGCTGGATGCGGCTGGGAAAACAACTATATTGTACAAGCTGCATATAGGAGAAGTTCTGTCTACAGTTCCTACTA</genome_strand>
        <mrna_strand>AAAGTTGCAGAAACTAAGGAAAAACAACGCTACCTTCTCCATATTTCTTCGGTTTATCAAATCGATAATCATCAAAATAAAGTATGAAGTTTTAAAGTTTGTCAGATCACCAAATTATAGTACAGATTAGCTCTAATTTGGATCCTTCACGTTTCACTCACCAATTTCATCTGATTCGCTTTTGGAGAAACGAAAAAAGGAGTGAAGAAGAAGAAGAGAAAAGGCAAAAGGCATAATGGGACAAGCTTTTCGCAAGCTATTTGATACTTTCTTCGGCAACTCTGAGATGAGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGATGCTAGGGCTGGATGCGGCTGGGAAAACAACTATATTGTACAAGCTGCATATAGGAGAAGTTCTGTCTACAGTTCCTACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E271827" ref_strand="+" ref_description="SGN-E271827 [cLEM-8-K18]">
      <seq>agaattcgagctacctagtggcttgatattgctcagtgacctcccagttcaatgaaaggcctctaaaatggccattgttacatcagtagagatagagatcaatagagaccttcaatgtgtcaaagatctcatcttttccatcatccttattttatcttttcaaataggtaatcatcatgaatttgtatgaagtactatctcacatatatcatgtctgccgtctactaatgtggtgcccacattagtcattactgacagcatagggagggacttggggaagggaacagagattttcttggaggaaaaaccaattttctttctgcaatgactttttgcctgctctgtaatgaaaatgattactacgaatggttgggttgttgcggcaggtttacgatgaagtaatgcttatttctcatcatccatccatcagctttcatagaccactgcctaatgttcactacacaccttttgtctctgattatttacttagttgattattcttcttgtatgtgtaactaattatcttacgcctttcacaattaccattttcattatttttttaaatcttatccctttctgctgtgtttactatgatttgcttggtataagttgtgatgctaaggctggatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0113N10.1" temp_strand="-" temp_description="C06SLm0113N10.1  AC219227.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0113N10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="43156" stop="41927"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42856" g_stop="42227" g_length="630"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="630" r_length="630" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0113N10.1" gen_strand="-" ref_id="SGN-E271827" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>630</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0113N10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E271827" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42856" e_stop="42227"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATTCGAGCTACCTAGTGGCTTGATATTGCTCAGTGACCTCCCAGTTCAATGAAAGGCCTCTAAAATGGCCATTGTTACATCAGTAGAGATAGAGATCAATAGAGACCTTCAATGTGTCAAAGATCTCATCTTTTCCATCATCCTTATTTTATCTTTTCAAATAGGTAATCATCATGAATTTGTATGAAGTACTATCTCACATATATCATGTCTGCCGTCTACTAATGTGGTGCCCACATTAGTCATTACTGACAGCATAGGGAGGGACTTGGGGAAGGGAACAGAGATTTTCTTGGAGGAAAAACCAATTTTCTTTCTGCAATGACTTTTTGCCTGCTCTGTAATGAAAATGATTACTACGAATGGTTGGGTTGTTGCGGCAGGTTTACGATGAAGTAATGCTTATTTCTCATCATCCATCCATCAGCTTTCATAGACCACTGCCTAATGTTCACTACACACCTTTTGTCTCTGATTATTTACTTAGTTGATTATTCTTCTTGTATGTGTAACTAATTATCTTACGCCTTTCACAATTACCATTTTCATTATTTTTTTAAATCTTATCCCTTTCTGCTGTGTTTACTATGATTTGCTTGGTATAGGTTGTGATGCTAGGGCTGGATG</genome_strand>
        <mrna_strand>AGAATTCGAGCTACCTAGTGGCTTGATATTGCTCAGTGACCTCCCAGTTCAATGAAAGGCCTCTAAAATGGCCATTGTTACATCAGTAGAGATAGAGATCAATAGAGACCTTCAATGTGTCAAAGATCTCATCTTTTCCATCATCCTTATTTTATCTTTTCAAATAGGTAATCATCATGAATTTGTATGAAGTACTATCTCACATATATCATGTCTGCCGTCTACTAATGTGGTGCCCACATTAGTCATTACTGACAGCATAGGGAGGGACTTGGGGAAGGGAACAGAGATTTTCTTGGAGGAAAAACCAATTTTCTTTCTGCAATGACTTTTTGCCTGCTCTGTAATGAAAATGATTACTACGAATGGTTGGGTTGTTGCGGCAGGTTTACGATGAAGTAATGCTTATTTCTCATCATCCATCCATCAGCTTTCATAGACCACTGCCTAATGTTCACTACACACCTTTTGTCTCTGATTATTTACTTAGTTGATTATTCTTCTTGTATGTGTAACTAATTATCTTACGCCTTTCACAATTACCATTTTCATTATTTTTTTAAATCTTATCCCTTTCTGCTGTGTTTACTATGATTTGCTTGGTATAAGTTGTGATGCTAAGGCTGGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E543074" ref_strand="+" ref_description="SGN-E543074 [TUS-64-L7](-)">
      <seq>tcaagtaggaaagtgagagatgacgcctgattcatgcattcaagaagactctggatcttcagccttgctttctccattccagggttggtgcaaataccgagtgggagtaagtttcttccattttcaggatagcatttcagtatgaagtatatgctgacccatccggagttgacacatgggattagaaaattaagctgtttgatcttgtgaccatttcatctctagccttgcatgcataataatagtagtgttcattccttgaccagttgaactattaacatacaacacacttgtattagtgctatctgtatcataaatcagtgccaatttcaaaccaaaaattctgtcggacatcagacaggctgttgaattggcctccttagttcagcattgagagttgctgtaatgtgtacactgtacaggcattggaccagtactccagaaatcgttttcgtttggttagggatatgcaagggaacttgccgcaaactgatcctttgagaaagtcaatattagtccctcatttattctgcaggttcagatattttatttgttggagcaatgtataactggatgattcatccagtttgcccccaaaaaaaaaaaaaaaaaaaaaaaaaaaagaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0113N10.1" temp_strand="-" temp_description="C06SLm0113N10.1  AC219227.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0113N10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="46674" stop="45478"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46374" g_stop="45779" g_length="596"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="596" r_length="596" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="597" polyA_stop="629"/>
      <MATCH_line gen_id="C06SLm0113N10.1" gen_strand="-" ref_id="SGN-E543074" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="0.948" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0113N10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E543074" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46374" e_stop="45779"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAGTAGGAAAGTGAGAGATGACGCCTGATTCATGCATTCAAGAAGACTCTGGATCTTCAGCCTTGCTTTCTCCATTCCAGGGTTGGTGCAAATACCGAGTGGGAGTAAGTTTCTTCCATTTTCAGGATAGCATTTCAGTATGAAGTATATGCTGAACCATCCGGAGTTGACACATGGGATTAGAAAATTAAGCTGTTTGATCTTGTGACCATTTCATCTCTAGCCTTGCATGCATAATAATAGTAGTGTTCATTCCTTGAACAGTTGAACTATTAACATACAACACACTTGTATTAGTGCTATCTGTATCATAAATCAGTGCCAATTTCAAACCAAAAACTCTGTCGGACATCAGACAGGCTGTTGAATTGGCCTCCTTAGTTCAGCATTGAGAGTTGCTGTAATGTGTACACTGTACAGGCATTGGACCAGTACTCCAGAAATCGTTTTCGTTTGGTTAGGGATATGCAAGGGAACTTGCCGCAAACTGATCCTTTGAGAAAGTCAATATTAGTACCTCATTTATTCTGCAGGTTCAGATATTTTATTTGTTGGAGCAATGTATAACTGGATGATTCATCCAGTTTGCACCCA</genome_strand>
        <mrna_strand>TCAAGTAGGAAAGTGAGAGATGACGCCTGATTCATGCATTCAAGAAGACTCTGGATCTTCAGCCTTGCTTTCTCCATTCCAGGGTTGGTGCAAATACCGAGTGGGAGTAAGTTTCTTCCATTTTCAGGATAGCATTTCAGTATGAAGTATATGCTGACCCATCCGGAGTTGACACATGGGATTAGAAAATTAAGCTGTTTGATCTTGTGACCATTTCATCTCTAGCCTTGCATGCATAATAATAGTAGTGTTCATTCCTTGACCAGTTGAACTATTAACATACAACACACTTGTATTAGTGCTATCTGTATCATAAATCAGTGCCAATTTCAAACCAAAAATTCTGTCGGACATCAGACAGGCTGTTGAATTGGCCTCCTTAGTTCAGCATTGAGAGTTGCTGTAATGTGTACACTGTACAGGCATTGGACCAGTACTCCAGAAATCGTTTTCGTTTGGTTAGGGATATGCAAGGGAACTTGCCGCAAACTGATCCTTTGAGAAAGTCAATATTAGTCCCTCATTTATTCTGCAGGTTCAGATATTTTATTTGTTGGAGCAATGTATAACTGGATGATTCATCCAGTTTGCCCCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E543075" ref_strand="+" ref_description="SGN-E543075 [TUS-64-L7]">
      <seq>gacaaacggttatgttagtcagcaccaggctagactccaagctgcagttgctgctgctgcaatttatgagaagtcctttgtttatccttctgcaccaacactaagccggtctcatggacatgctctatttcctccttcctatggaccagtcagttttatcagcgtggactcacaaagagagagtgctgcaaatgaatggtcacagcaacatcaatatgcaaatatgccttttgcttactatccacagagcagttttggtcctttaggatatcctggtgctaacatgcctgttggagatggttcccggagtaaccttagtacttcagatactcagctcgaggcccataggatattcttacagcagcagtgtgaggctctgcaaaaccagctcaagcttctacagagttcaaagacacagaaagtagcagatggtgcaaaagtttctgaaagcaagggaaaagcaatttcattagagaatgctcaaaatggacaggctgaaggtgcagatttttaaggagtgatcatctgtatataaagtgcagttgtaatcatccagttagaatggctgctgaacaatggaattcaccggaagatctgttggttgtattttctctagtgatctggatatcgttgtattgcagagtttcaatttcacatcttcatttagcggtccattagcaaaccacatcaacaggtacaacaattttagcagaagaattatatgttcaagtaggaaagtgagagatgacgcctgattcatgcattca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0113N10.1" temp_strand="-" temp_description="C06SLm0113N10.1  AC219227.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0113N10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="49088" stop="46033"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48788" g_stop="48681" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="108" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48680" i_stop="47972" i_length="709">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47971" g_stop="47707" g_length="265"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="373" r_length="265" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47706" i_stop="46799" i_length="908">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46798" g_stop="46531" g_length="268"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="641" r_length="268" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46530" i_stop="46460" i_length="71">
            <donor d_prob="0.910" d_score="1.00"/>
            <acceptor a_prob="0.879" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="46459" g_stop="46333" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="642" r_stop="767" r_length="126" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0113N10.1" gen_strand="-" ref_id="SGN-E543075" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>768</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0113N10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E543075" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48788" e_stop="48681"/>
          <exon e_start="47971" e_stop="47707"/>
          <exon e_start="46798" e_stop="46531"/>
          <exon e_start="46459" e_stop="46333"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACAAACGGTTATGTTAGTCAGCACCAGGCTAGACTCCAAGCTGCAGTTGCTGCTGCTGCAATTTATGAGAAGTCCTTTGTTTATCCTTCTGCACCAACACTAAGCCGGTATGATTCTCTTATATGTCAACATTGTATTGCTTATCTTCTTTGTATATTTATGAGACCTTCCCCCCAGAAGTGCTTGTAAAGGCATAAACCTCCCTGACTATCTTCCTTGATAAGCATAGTTACGTTGATTCTTTCCATGTCCCATTATGTTTCATGCTCTCTTTTTTATTTCTAAGAACAAGTAACTGTTTGCAGTTTTACTTTCAAAAAGAACAAGTAGTTGTTGGTCTCAATTTTTTATAAGCAGTAATAACTGTTAGCCCCACTTGTTTTCTGGATTTACATTAAAGAATACCAATCTCTTCAAAATCAAAAGTACAGATAAATTAGAAATGAAGGAGCATCCAATGTATGCCATTGACATCCTCTGAAGATTTCACATAAGCACTTGGCATGTTGTGGGATCACAGTCGTATTCAATGAGTTGCCTTGGAGATTTGGCTTGTCATGTAACCCTTGACTTTAGCAGATGATTGCTAATTAACTTGTCCATATCTTCATGGGAAATGACTTTCAATATATATTTCCTTGGTCATGTGGTGTGAACTAGTGGTAGAGGCAGAGTGAGGTTGATGGTGGTGACTTCCCTGTTTTTTTTTTTTTTTTGGCAGTTGACAAGGGGATGCTTGTCGTCTTTATGTCCACAAATTTGTAGTTCTTTTAAGCACAATGAAAGAACTTTAGTTAATTATTCTCATGCTTGCAGGTCTCATGGACATGCTCTATTTCCTCCTTCCTATGGACCAGTCAGTTTTATCAGCGTGGACTCACAAAGAGAGAGTGCTGCAAATGAATGGTCACAGCAACATCAATATGCAAATATGCCTTTTGCTTACTATCCACAGAGCAGTTTTGGTCCTTTAGGATATCCTGGTGCTAACATGCCTGTTGGAGATGGTTCCCGGAGTAACCTTAGTACTTCAGATACTCAGCTCGAGGCCCATAGGATATTCTTACAGCAGCAGTGTGAGGTATGAACATTTGTCTGGTGAATTTGTACTCTCTTTTATGTTTGTTGATATTGCTAATTTCAATATGCATTAATCATCATTGAGATAATTTCTAGTTCTGTTGAAAACATAATTAAGTAAATGTAAGTGTGATCTCTCTAATATCTTAAGCTTTACGATGAAGTTTTTCACACATCCAACATGGTATTAGAGCAGGTGAAGGTCCTGGGTTCAAATCTCACTACCACCCATTATCAATCAACAAAAAGAATTTCCTCGTGCTTGGCCTATCGAAAAAGATCAAGCCCGCACATGAGGAGATACGTCAATTATATAATTAAGTAAATAAAAGTGTTATCTCTCTAATAGCTTAAGCTTTTAAATGAGATGGTCACACACTTCAATAAATTTTCATTATTCTATTTGTCTTAAAATGTTTTGAAGTTCTTAAAGTTTGTTCTCTTTTTGGAATGGGACTTCAGCTTTGTTGGTAGAACATATCACCTCAGATGAAATTCTGTGGAAAATTGCAAAACTCCCCTTTAAATGGTTACTTTACAACTTTGGTGGCGAAACTCAGTGCTTTGATTGTTATATTCTCTTTTTGGACATTTTTCTATGAAGGGGGGATGGAATGTATTTAATATGCTGTTACGGTTGAGATAGTTATGGACCATACAGCTCTGAAAATTGATGTTTAGCCCTTCACCCTGTATAAGATCACACTGTAGTGGATTGGATTCTCATTTTCAAGATTGCTTCTTAGTGTTTCTTTTTTTAGGTTACCTTTTTGCTTATTCGATCTCTCTCTCTCTCTTTCTCTCTCTATCTATCTATCTATCTATATATATATATATATATGCATGTATGTATGTTTGTATATGTGATGTGTATATATTTACCTATGGAATCTACATTTATTTATCTAGGCTCTGCAAAACCAGCTCAAGCTTCTACAGAGTTCAAAGACACAGAAAGTAGCAGATGGTGCAAAAGTTTCTGAAAGCAAGGGAAAAGCAATTTCATTAGAGAATGCTCAAAATGGACAGGCTGAAGGTGCAGATTTTTAAGGAGTGATCATCTGTATATAAAGTGCAGTTGTAATCATCCAGTTAGAATGGCTGCTGAACAATGGAATTCACCGGAAGATCTGTTGGTTGTATTTTCTCTAGTGATCTGGATATCGTTGTATTGCAGGTGAGAGATCAACCATTTCTTTCTTCTGCAAGTTCCTTTCTTGAGGATCTCCAACTCTTGTATCTCTGCAGAGTTTCAATTTCACATCTTCATTTAGCGGTCCATTAGCAAACCACATCAACAGGTACAACAATTTTAGCAGAAGATATTATATGTTCAAGTAGGAAAGTGAGAGATGACGCCTGATTCATGCATTCA</genome_strand>
        <mrna_strand>GACAAACGGTTATGTTAGTCAGCACCAGGCTAGACTCCAAGCTGCAGTTGCTGCTGCTGCAATTTATGAGAAGTCCTTTGTTTATCCTTCTGCACCAACACTAAGCCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTCATGGACATGCTCTATTTCCTCCTTCCTATGGACCAGTCAGTTTTATCAGCGTGGACTCACAAAGAGAGAGTGCTGCAAATGAATGGTCACAGCAACATCAATATGCAAATATGCCTTTTGCTTACTATCCACAGAGCAGTTTTGGTCCTTTAGGATATCCTGGTGCTAACATGCCTGTTGGAGATGGTTCCCGGAGTAACCTTAGTACTTCAGATACTCAGCTCGAGGCCCATAGGATATTCTTACAGCAGCAGTGTGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCTGCAAAACCAGCTCAAGCTTCTACAGAGTTCAAAGACACAGAAAGTAGCAGATGGTGCAAAAGTTTCTGAAAGCAAGGGAAAAGCAATTTCATTAGAGAATGCTCAAAATGGACAGGCTGAAGGTGCAGATTTTTAAGGAGTGATCATCTGTATATAAAGTGCAGTTGTAATCATCCAGTTAGAATGGCTGCTGAACAATGGAATTCACCGGAAGATCTGTTGGTTGTATTTTCTCTAGTGATCTGGATATCGTTGTATTGCAG.......................................................................AGTTTCAATTTCACATCTTCATTTAGCGGTCCATTAGCAAACCACATCAACAGGTACAACAATTTTAGCAGAAGA-ATTATATGTTCAAGTAGGAAAGTGAGAGATGACGCCTGATTCATGCATTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E303371" ref_strand="+" ref_description="SGN-E303371 [cLEX-2-D23]">
      <seq>acaaacggttatgttagtcagcaccaggctagactccaagctgcagttgctgctgctgcaatttatgagaagtcctttgtttatccttctgcaccaacactaagccggtctcatggacatgctctatttcctccttcctatggaccagtcagttttatcagcgtggactcacaaagagagagtgctgcaaatgaatggtcacagcaacatcaatatgcaaatatgccttttgcttactatccacagagcagttttggtcctttaggatatcctggtgctaacatgcctgttggagatggttcccggagtaaccttagtacttcagatactcagctcgaggcccataggatattcttacagcagcagtgtgaggctctgcaaaacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0113N10.1" temp_strand="-" temp_description="C06SLm0113N10.1  AC219227.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0113N10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="49087" stop="47398"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48787" g_stop="48681" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="107" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48680" i_stop="47972" i_length="709">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47971" g_stop="47707" g_length="265"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="372" r_length="265" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0113N10.1" gen_strand="-" ref_id="SGN-E303371" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>372</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0113N10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E303371" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48787" e_stop="48681"/>
          <exon e_start="47971" e_stop="47707"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAACGGTTATGTTAGTCAGCACCAGGCTAGACTCCAAGCTGCAGTTGCTGCTGCTGCAATTTATGAGAAGTCCTTTGTTTATCCTTCTGCACCAACACTAAGCCGGTATGATTCTCTTATATGTCAACATTGTATTGCTTATCTTCTTTGTATATTTATGAGACCTTCCCCCCAGAAGTGCTTGTAAAGGCATAAACCTCCCTGACTATCTTCCTTGATAAGCATAGTTACGTTGATTCTTTCCATGTCCCATTATGTTTCATGCTCTCTTTTTTATTTCTAAGAACAAGTAACTGTTTGCAGTTTTACTTTCAAAAAGAACAAGTAGTTGTTGGTCTCAATTTTTTATAAGCAGTAATAACTGTTAGCCCCACTTGTTTTCTGGATTTACATTAAAGAATACCAATCTCTTCAAAATCAAAAGTACAGATAAATTAGAAATGAAGGAGCATCCAATGTATGCCATTGACATCCTCTGAAGATTTCACATAAGCACTTGGCATGTTGTGGGATCACAGTCGTATTCAATGAGTTGCCTTGGAGATTTGGCTTGTCATGTAACCCTTGACTTTAGCAGATGATTGCTAATTAACTTGTCCATATCTTCATGGGAAATGACTTTCAATATATATTTCCTTGGTCATGTGGTGTGAACTAGTGGTAGAGGCAGAGTGAGGTTGATGGTGGTGACTTCCCTGTTTTTTTTTTTTTTTTGGCAGTTGACAAGGGGATGCTTGTCGTCTTTATGTCCACAAATTTGTAGTTCTTTTAAGCACAATGAAAGAACTTTAGTTAATTATTCTCATGCTTGCAGGTCTCATGGACATGCTCTATTTCCTCCTTCCTATGGACCAGTCAGTTTTATCAGCGTGGACTCACAAAGAGAGAGTGCTGCAAATGAATGGTCACAGCAACATCAATATGCAAATATGCCTTTTGCTTACTATCCACAGAGCAGTTTTGGTCCTTTAGGATATCCTGGTGCTAACATGCCTGTTGGAGATGGTTCCCGGAGTAACCTTAGTACTTCAGATACTCAGCTCGAGGCCCATAGGATATTCTTACAGCAGCAGTGTGAG</genome_strand>
        <mrna_strand>ACAAACGGTTATGTTAGTCAGCACCAGGCTAGACTCCAAGCTGCAGTTGCTGCTGCTGCAATTTATGAGAAGTCCTTTGTTTATCCTTCTGCACCAACACTAAGCCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTCATGGACATGCTCTATTTCCTCCTTCCTATGGACCAGTCAGTTTTATCAGCGTGGACTCACAAAGAGAGAGTGCTGCAAATGAATGGTCACAGCAACATCAATATGCAAATATGCCTTTTGCTTACTATCCACAGAGCAGTTTTGGTCCTTTAGGATATCCTGGTGCTAACATGCCTGTTGGAGATGGTTCCCGGAGTAACCTTAGTACTTCAGATACTCAGCTCGAGGCCCATAGGATATTCTTACAGCAGCAGTGTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E620481" ref_strand="+" ref_description="SGN-E620481 [71183]">
      <seq>tggaaagatgcatttctttctcaacaatgccagagtcgttagtcaaaatatctgcactaaaagtgcttccatcagatgccatggcattgatcaagtcctggaaggtgcccctttggcatctgatcatattaatgctagtcttcctgtgcctccaccttgtgatcataacattacaagtccgccttttgggctggttgcatcacctcctgtaatgtcaccaccatctgcagcacagccaataagtagcaacattagtccgatcccatcatcagctccaccactgaaatctgcagtatctttaagtaaaaccggaatagctggacttatttggttgctgatggctgtgaagttatctctttgatcgaaacttaggcttcaagttgaatcaaagcaagatagcaagcttgtatatggaggcaaaacggggatatactaatatattacagaatttgtattgcatatggtacttctagtctatttaaactttgttgtttgttttgccactttctatagatagtccaaaggtatcttatgtttgaaccagataaaagtccacaaacaactttttgtactaaaagggtttgaagta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0113N10.1" temp_strand="-" temp_description="C06SLm0113N10.1  AC219227.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0113N10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="62001" stop="60810"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61701" g_stop="61110" g_length="592"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="589" r_length="589" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0113N10.1" gen_strand="-" ref_id="SGN-E620481" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>592</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0113N10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E620481" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61701" e_stop="61110"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGATACATGCATTTGTTTCTCAACAATGCTCGAGTCGTTAGTCCAAATATCTGCACTAAAAGTGCTTCCATCAGATGCCATGGCATTGATCAAGTCCTGGAAGGTGCCACTTTGCCATCTGAACATAATAATACCAGTCTTCCTGTGCCTCCACCTTGTGATCATAACATTACGATCCCGCCTTTTGGGCTGGTTGCACCACCTCCTGTAATGTCACCACCATCTGCAGCACAGCCAGTAAGTAGCAACATTAGTCCGATTCCATCATCAACTCCACCTCTGAAATCTGCAGTATCTTTAAGTAAAACCGGAATAACTGGGCTTATTTGGTTGCTGATGGCCGTGAAGTTATCTCTTTGATCGAAACTTAGGCTTCTAGCTGAATCAAAGCAAGAGAGCAAGCTTGTATATGGAGGCCAAACGGGGATATACTGATATATTACTGAATTTGTATTATTGCATATGGTACTTCTACTCTATTTAAACTTTGTTGTTTGTTTTGCCACTTTCTATAGATGCTCTAAATGTATCTTATGTTTTGAACTAGAT-AAAGTCCACAAACAACTTTTTGTACTAAAAGGGTTTGAAGTA</genome_strand>
        <mrna_strand>TGGAAAGATGCATTTCTTTCTCAACAATGCCAGAGTCGTTAGTCAAAATATCTGCACTAAAAGTGCTTCCATCAGATGCCATGGCATTGATCAAGTCCTGGAAGGTGCCCCTTTGGCATCTGATCATATTAATGCTAGTCTTCCTGTGCCTCCACCTTGTGATCATAACATTACAAGTCCGCCTTTTGGGCTGGTTGCATCACCTCCTGTAATGTCACCACCATCTGCAGCACAGCCAATAAGTAGCAACATTAGTCCGATCCCATCATCAGCTCCACCACTGAAATCTGCAGTATCTTTAAGTAAAACCGGAATAGCTGGACTTATTTGGTTGCTGATGGCTGTGAAGTTATCTCTTTGATCGAAACTTAGGCTTCAAGTTGAATCAAAGCAAGATAGCAAGCTTGTATATGGAGGCAAAACGGGGATATACTAATATATTACAGAATTTG---TATTGCATATGGTACTTCTAGTCTATTTAAACTTTGTTGTTTGTTTTGCCACTTTCTATAGATAGTCCAAAGGTATCTTATG-TTTGAACCAGATAAAAGTCCACAAACAACTTTTTGTACTAAAAGGGTTTGAAGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E549480" ref_strand="+" ref_description="SGN-E549480 [TUS-70-M23](-)">
      <seq>aaagtgaaagaaatggaccagaagttccaagtctcagaaaagtcaaaatctgcttttgcagctgctgaacagacagttagcaatgctggatctgccatcatgaagaacagatatgctttgaccggtgtaacttgggctgcaggtgcattaagtcgagtcactaaggctgccggggaagtgggacagaagacaaaggaaaaactggctgaagaagaaagaagaacttttactaaaggtcatgcacaagaaaatactgcaacttcaacaaaaggtaatgtgcaacaacaagctgcagataccgctaaaggtgatgtccaagaactcactccagcttctgctaaaggtgatgtgcaagaacttgctgcagcttctgctaaaggtgatgtgcaagaacttgctacagcttctgctaaaggtgatgtacaagaacttgctgcagcttctgccaaaagtaatgtgcaagaacatgctgcaacttctgctaaaaatgatgtgcaagaagttgcagcaactactgcaaaacaagaacataccgagactcaaatcggagttgaggaatccaccaatccctctcttccaccaaaagcttaatccaacattatcttgaaagtaaatgcgcgatttacgctagtttgttattcgaatttgcacaggtcattatgtatcaactatggtatttatacatggaatcttatttcttaggtaaaaaagaaaaaaaaaaactcgaggggggcccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0113N10.1" temp_strand="-" temp_description="C06SLm0113N10.1  AC219227.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0113N10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="64359" stop="63055"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64059" g_stop="63356" g_length="704"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="704" r_length="704" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="705" polyA_stop="722"/>
      <MATCH_line gen_id="C06SLm0113N10.1" gen_strand="-" ref_id="SGN-E549480" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>704</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0113N10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E549480" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64059" e_stop="63356"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGTGAAAGAAATGGACCAGAAGTTCCAAGTCTCAGAAAAGTCAAAATCTGCTTTTGCAGCTGCTGAACAGACAGTTAGCAATGCTGGATCTGCCATCATGAAGAACAGATATGCTTTGACCGGTGTAACTTGGGCTGCAGGTGCATTAAGTCGAGTCACTAAGGCTGCCGGGGAAGTGGGACAGAAGACAAAGGAAAAACTGGCTGAAGAAGAAAGAAGAACTTTTACTAAAGGTCATGCACAAGAAAATACTGCAACTTCAACAAAAGGTAGTGTGCAACAACAAGCTGCAGATTCCGCTAAAGGTGATGTCCAAGAACTCACTCCAGCTTCTGCTAAAGGTGATGTGCAAGAACTTGCTGCAGCTTCTGCTAAAGGTGATGTGCAAGAACTTGCTACAGCTTCTGCTAAAGGTGATGTACACGAACTTGCTGCAGCTTCTGCCAAAAGTGATGTGCAAGAGCATGCTGCAACTTCTGCTAAAAGTGATGTGCAAGAAGTTGCAGCAACTTCTGCAAAACAAGAACATACCGAGACTCAAACCGGAGTTGAGGAATCCACCAATCCCTCTCTTCCACCAAAAGCTTAATCCAACATTATCTTGAAAGTAAATGCGTGATTTACGCTAGTTTGTTATTCGAATTTGCACAGGTCATTATGTATCAACTATGGTATTTATACATGGAATTTTATTTCTTAGGT</genome_strand>
        <mrna_strand>AAAGTGAAAGAAATGGACCAGAAGTTCCAAGTCTCAGAAAAGTCAAAATCTGCTTTTGCAGCTGCTGAACAGACAGTTAGCAATGCTGGATCTGCCATCATGAAGAACAGATATGCTTTGACCGGTGTAACTTGGGCTGCAGGTGCATTAAGTCGAGTCACTAAGGCTGCCGGGGAAGTGGGACAGAAGACAAAGGAAAAACTGGCTGAAGAAGAAAGAAGAACTTTTACTAAAGGTCATGCACAAGAAAATACTGCAACTTCAACAAAAGGTAATGTGCAACAACAAGCTGCAGATACCGCTAAAGGTGATGTCCAAGAACTCACTCCAGCTTCTGCTAAAGGTGATGTGCAAGAACTTGCTGCAGCTTCTGCTAAAGGTGATGTGCAAGAACTTGCTACAGCTTCTGCTAAAGGTGATGTACAAGAACTTGCTGCAGCTTCTGCCAAAAGTAATGTGCAAGAACATGCTGCAACTTCTGCTAAAAATGATGTGCAAGAAGTTGCAGCAACTACTGCAAAACAAGAACATACCGAGACTCAAATCGGAGTTGAGGAATCCACCAATCCCTCTCTTCCACCAAAAGCTTAATCCAACATTATCTTGAAAGTAAATGCGCGATTTACGCTAGTTTGTTATTCGAATTTGCACAGGTCATTATGTATCAACTATGGTATTTATACATGGAATCTTATTTCTTAGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E547101" ref_strand="+" ref_description="SGN-E547101 [TUS-70-M23]">
      <seq>ctcagattgatctgctatcttttttctatctcgatccatgtcggttaaaacagtgcaagtgaacaatgtttctttgggtgctaaagagcaagatatcaaggagttcttctccttctctggggatattgaatatttagagatgaaaggtgagagtgagcgatcacaagttgcttatgtaacattcaaggatcctcagagtgcagagaccgcagttcttctttcaggagctacaattgttgatcagtccatctcaatagtcctagcacctgagtacaagctcccacctacagcttcagtatcaccagttccaaatgaaagcaccactgcacccgctgctggatctgctattcaaaaggcagaggatgtagtcagcagcatgttggcaaagggctttatcttgggcaaggacgcagttggcaaagccaaggcactagacgagagacacaagatcacatccactacctcagccacagttgcttctatagaccaaaaatatggccttagtgagaaaatcactacaggagcgaccattgtgaaccacaaagtgaaagaaatggaccagaagttccaagtctcagaaaagtcaaaatctgcttttgcagctgctgaacagacagttagcaatgctggatctgccatcatgaagaacagatatgctttgaccggtgtaacttgggctgcangtgcattaagtcgagtcactaaggctgccgggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0113N10.1" temp_strand="-" temp_description="C06SLm0113N10.1  AC219227.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0113N10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="67429" stop="63584"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67129" g_stop="67087" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="0.953"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67086" i_stop="66619" i_length="468">
            <donor d_prob="0.979" d_score="0.95"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66618" g_stop="66515" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="147" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66514" i_stop="66360" i_length="155">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66359" g_stop="66284" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="223" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="66283" i_stop="64465" i_length="1819">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64464" g_stop="64381" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="307" r_length="84" r_score="0.988"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="64380" i_stop="64294" i_length="87">
            <donor d_prob="0.925" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="64293" g_stop="63884" g_length="410"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="717" r_length="410" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0113N10.1" gen_strand="-" ref_id="SGN-E547101" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>717</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0113N10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E547101" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67129" e_stop="67087"/>
          <exon e_start="66618" e_stop="66515"/>
          <exon e_start="66359" e_stop="66284"/>
          <exon e_start="64464" e_stop="64381"/>
          <exon e_start="64293" e_stop="63884"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAGATTGATCTGCTATCTTTTTTTAATCTCGATCCATGTCGGTAAGTGCATAGCTCAACATCTCTATTTCTTTTAATTTGTTGGTACAAACAAATGCAAATTAGCTGATGATAATCTGTATTCTCCCCTGTTTGATCATGGAATAGACGAAATAAATCATTTTTGAATTATTGTTCTGTGAGATTCAATTTCATTTGTATATATATATCAAATACATAAACAAATGGAGTCTAAACTAATATAGAATAATTCTTATTTATATCCTTTTTGTAACTAGTATATAGGAAAGGTACAACTTTTAATCTTATGGCATTATATCCATCAGGTGATAATAATATTTCGTTTATTTAGAATGAGAAAGATTGTTTTTTTTTTTAAATAGTGGAAAAATTTAATAGATAAAGTCATTGTTACTATCATTACGTAACCGTAAATGAGATTTTCACCTATTAAGCCTTTTGTTGTAAAGTCTTGCTGATATTTTTTTGGTTGTTTTATTATAATGATAGGTTAAAACAGTGCAAGTGAACAATGTTTCTTTGGGTGCTAAAGAGCAAGATATCAAGGAGTTCTTCTCCTTCTCTGGGGATATTGAATATTTAGAGATGAAAGGGTTAGTTTATAATTAGTATTTTTGGATTTTTCAGCATCTAACTTATCTTTACACAACATTTTATATGGTCATAAAACAGGGTGTATGTGCCTATTGAGGATGATTGATGGTTACTTTTATTACCTTACATGTTTTTTTTTGTTTTTTTTTTATAGTGAGAGTGAGCGATCACAAGTTGCTTATGTAACATTCAAGGATCCTCAGAGTGCAGAGACCGCAGTTCTTCTTTCAGTATGTAAACTTCCCCTTGATCTTGATAGTTAATAAGTTTCTACAATTGCCAGTTTGATTTTTTTAATGATGAAAAAACTGTTATCTTTGTTGATGAAGTATTACTTTTGGAGGCATTAAATGTCTTTTAGAATAATTTATGATAGTTATGTCTCGGAGTGTACACCAGAAATTCTATGAAAGGTGCAAGACCTTTGTGCTAGTTAAGTTAGCAAGCATCCTTTATCAAAAATGATACGAGCTAGCGCCCTATAGCAAAATTCTGAGAATAGCATTAAGTAGGTTAGCTCACAGTTTGTGGCTTTGTGCTTTTGTGGTTGTCCCGAATAATTCCATCTATGTGAGATAGATTCAGAGTCTCTTTTACATTTATGAGATTGCTAAGTTTTCTAGGTTATGAAAAAAAGGATACTGTTTATGTTAAGGAACATCAAAGGATCAGCTGCGCTAAGGGGCAACAATTTGCTTCATGTTTGTACTGTTTCTCTTGGTTAAACTGTCACTTGTAAGCTTGTGAGACCGTTAACTGAGGAGATTTAAGAGCTAATCCATCCATTACTTGGATAAATACTTCACATAGCTCTGCTGGTTGGTATCTCCTTTTCAATTAGGTTTATTCACTCGGAGCCTTTTCTTTTCTGTAGGAACAACAGAAGTTCCAAAGTGGTCCCATATAAGCTAGATTCAGTTGAGAGTCATCACATAACTTTGGTTGTTCATGTTAGCATTTTTGCCAACAGGGGGGTGAGGGAGATAAAGTTTCATTCCTGATTTCATATTAATACAAGGAGCTTACGGTAAAGAATGAACCGTGGGCCTAACTCAATCCCAATAAATTAGTTCATGAGGTGGGCAAATAAGTAGACAAACAACTCATCCCTCAACCCAATGTGGGATTGAGGTGAGGATTGCTCAGGGCCAAATAAGTAGACAAACAACTCATCCCTCAACCTATTGTGGGTAACTTCTGTATGAGCTTCCAGTTTTCACCTCCTTTAAGTATTTATTGGTTCGGGTAGCACTTATAGTTGTCTGTATCTTGACTTGGTGAGTTATGGATTTTCTCTGTCATTATTAATGTCTTTTTGTTATTATTTTTTCTTTTGTCCATGACTAGCTATCAGTTTGTCTTTCTTATTTTTTTCCTTGGTGAGTAGGGGAGGGTGGAGAGGGATATATTAGGCAGATGATAGAAGTGCTTAAAGTCTTGAAGCTCCCCATTGCTTCCAGAGAATAGTTCAAAGTAGCTAACGAAATCATAAAAGCCTAGGTCCATGTTACTTGCGTGTGGCCTTCTTACTTCAGCATGATGGCTTTAATAGAAGGATCAAAATAACTCTAGGGAAAATTGCAGTTTGAAAAATTTAAGGTATTATATTGCATTTAGTATAGTGTAGAAGTCAACCAGTCCTTTTAAAAGGAAGCACACAATTAAGGAGCTTGCACACTTTTCTAATGAACATCTTATTGACAATTTTCTCTGTGGATACTCTCAGTATTTTAGTATTTAAAGTCAGAATTGCTCAGATGTTACAGAGAGTAAGGGAATTTTTCTATACTTGAGAAGTCAGTACTATCATTTTTTCTCTTCTTCAATCCAGTTGAAGTGTTTTAATAGAGTCTAGAGATACAGATAAAGTGCATTCTAGCATAAGTATTGTTGGTTGTTCACATAGCTTATGTGCTGCTTGATTACAAGATGAGCTGTTTCCAGTTTTTGATGGTGTGCTTTAGCTGCTTCGTCTGTATCTTCACATTATTCAAATGATCCCTTTACTGCTCCACTTTTGCAATTGATAAGCTCACTTTGTGTTTTTAGGGAGCTACAATTGTTGATCAGTCCATCTCAATAGTCCTAGCACCCGAGTACAAGCTCCCACCTACAGCTTCAGTATCACCAGTTGTACGTATAATTTTATGTTTTAAACAGACTTTCCGGCTTCATCGATCACATGATTGTCCATAAATGGTGTACCATTTATATGTGCAGCCAAATGAAACCACCACTGCACCCGCTGCTGGATCTGCTATTCAAAAGGCAGAGGATGTAGTCAGCAGCATGTTGGCAAAGGGCTTTATCTTGGGCAAGGACGCAGTTGGCAAAGCCAAGGCACTAGACGAGAGACACAAGATCACATCCACTACCTCAGCCACAGTTGCTTCTATAGACCAAAAATATGGCCTTAGTGAGAAAATCACTACAGGAGCGACGATTGTGAACCACAAAGTGAAAGAAATGGACCAGAAGTTCCAAGTCTCAGAAAAGTCAAAATCTGCTTTTGCAGCTGCTGAACAGACAGTTAGCAATGCTGGATCTGCCATCATGAAGAACAGATATGCTTTGACCGGTGTAACTTGGGCTGCAGGTGCATTAAGTCGAGTCACTAAGGCTGCCGGGGA</genome_strand>
        <mrna_strand>CTCAGATTGATCTGCTATCTTTTTTCTATCTCGATCCATGTCG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAAAACAGTGCAAGTGAACAATGTTTCTTTGGGTGCTAAAGAGCAAGATATCAAGGAGTTCTTCTCCTTCTCTGGGGATATTGAATATTTAGAGATGAAAGG...........................................................................................................................................................TGAGAGTGAGCGATCACAAGTTGCTTATGTAACATTCAAGGATCCTCAGAGTGCAGAGACCGCAGTTCTTCTTTCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGCTACAATTGTTGATCAGTCCATCTCAATAGTCCTAGCACCTGAGTACAAGCTCCCACCTACAGCTTCAGTATCACCAGTT.......................................................................................CCAAATGAAAGCACCACTGCACCCGCTGCTGGATCTGCTATTCAAAAGGCAGAGGATGTAGTCAGCAGCATGTTGGCAAAGGGCTTTATCTTGGGCAAGGACGCAGTTGGCAAAGCCAAGGCACTAGACGAGAGACACAAGATCACATCCACTACCTCAGCCACAGTTGCTTCTATAGACCAAAAATATGGCCTTAGTGAGAAAATCACTACAGGAGCGACCATTGTGAACCACAAAGTGAAAGAAATGGACCAGAAGTTCCAAGTCTCAGAAAAGTCAAAATCTGCTTTTGCAGCTGCTGAACAGACAGTTAGCAATGCTGGATCTGCCATCATGAAGAACAGATATGCTTTGACCGGTGTAACTTGGGCTGCANGTGCATTAAGTCGAGTCACTAAGGCTGCCGGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E360742" ref_strand="+" ref_description="SGN-E360742 [cLPP-7-G23]">
      <seq>tcagattgatctgctatcttttttctatctcgatccatgtcggttaaaacagtgcaagtgaacaatgtttctttgggtgctaaagagcaagatatcaaggagttcttctccttctctggggatattgaatatttagagatgaaaggtgagagtgagcgatcacaagctgcttatgtaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0113N10.1" temp_strand="-" temp_description="C06SLm0113N10.1  AC219227.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0113N10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="67428" stop="66026"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67128" g_stop="67087" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67086" i_stop="66619" i_length="468">
            <donor d_prob="0.979" d_score="0.95"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66618" g_stop="66515" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="146" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66514" i_stop="66360" i_length="155">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66359" g_stop="66326" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="180" r_length="34" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0113N10.1" gen_strand="-" ref_id="SGN-E360742" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>180</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0113N10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E360742" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67128" e_stop="67087"/>
          <exon e_start="66618" e_stop="66515"/>
          <exon e_start="66359" e_stop="66326"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGATTGATCTGCTATCTTTTTTTAATCTCGATCCATGTCGGTAAGTGCATAGCTCAACATCTCTATTTCTTTTAATTTGTTGGTACAAACAAATGCAAATTAGCTGATGATAATCTGTATTCTCCCCTGTTTGATCATGGAATAGACGAAATAAATCATTTTTGAATTATTGTTCTGTGAGATTCAATTTCATTTGTATATATATATCAAATACATAAACAAATGGAGTCTAAACTAATATAGAATAATTCTTATTTATATCCTTTTTGTAACTAGTATATAGGAAAGGTACAACTTTTAATCTTATGGCATTATATCCATCAGGTGATAATAATATTTCGTTTATTTAGAATGAGAAAGATTGTTTTTTTTTTTAAATAGTGGAAAAATTTAATAGATAAAGTCATTGTTACTATCATTACGTAACCGTAAATGAGATTTTCACCTATTAAGCCTTTTGTTGTAAAGTCTTGCTGATATTTTTTTGGTTGTTTTATTATAATGATAGGTTAAAACAGTGCAAGTGAACAATGTTTCTTTGGGTGCTAAAGAGCAAGATATCAAGGAGTTCTTCTCCTTCTCTGGGGATATTGAATATTTAGAGATGAAAGGGTTAGTTTATAATTAGTATTTTTGGATTTTTCAGCATCTAACTTATCTTTACACAACATTTTATATGGTCATAAAACAGGGTGTATGTGCCTATTGAGGATGATTGATGGTTACTTTTATTACCTTACATGTTTTTTTTTGTTTTTTTTTTATAGTGAGAGTGAGCGATCACAAGTTGCTTATGTAACA</genome_strand>
        <mrna_strand>TCAGATTGATCTGCTATCTTTTTTCTATCTCGATCCATGTCG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAAAACAGTGCAAGTGAACAATGTTTCTTTGGGTGCTAAAGAGCAAGATATCAAGGAGTTCTTCTCCTTCTCTGGGGATATTGAATATTTAGAGATGAAAGG...........................................................................................................................................................TGAGAGTGAGCGATCACAAGCTGCTTATGTAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E312169" ref_strand="+" ref_description="SGN-E312169 [cTOA-11-O6]">
      <seq>tgttttgcaaagttgggttaagggcttgtaatgttttctcatgggataacagtattccaacaggaaaaaaaggtctggtttaccccaccacaaaaaaaaataaaagaagagaaaaataagtaatatcaatattttcgttttacaatgtgttagttgcatgtgctgaaatatatactaaattgtaaccaagcgaagacatttttgtaggaaaaagttgatatatacatatcacaatacgagttttacaatcttacatgactccattcccaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0113N10.1" temp_strand="-" temp_description="C06SLm0113N10.1  AC219227.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0113N10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="74034" stop="73163"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73734" g_stop="73463" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="272" r_length="272" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0113N10.1" gen_strand="-" ref_id="SGN-E312169" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>272</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0113N10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E312169" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73734" e_stop="73463"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTTTGCAAAGTTGGGTTAAGGGCTTGTAATGTTTTCTCATGGGATAACAGTATTCCAACAGGAAAAAAAGGTCTGGTTTACCCCACCACAAAAAAAAAAAAAAGAAGAGAAAAATAAGTAATATCAATATTTTCGTTTTACAATGTGTTAGTTGCATGTGCTGAAATATTTACTAAATTGTAACCAAGCGAAGACATTTTTGTTGGAAAAAGTTGATATATACAAATCACAATACGAGTATTACAATCTCACATGACTCCATTCCCAACT</genome_strand>
        <mrna_strand>TGTTTTGCAAAGTTGGGTTAAGGGCTTGTAATGTTTTCTCATGGGATAACAGTATTCCAACAGGAAAAAAAGGTCTGGTTTACCCCACCACAAAAAAAAATAAAAGAAGAGAAAAATAAGTAATATCAATATTTTCGTTTTACAATGTGTTAGTTGCATGTGCTGAAATATATACTAAATTGTAACCAAGCGAAGACATTTTTGTAGGAAAAAGTTGATATATACATATCACAATACGAGTTTTACAATCTTACATGACTCCATTCCCAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E390051" ref_strand="+" ref_description="SGN-E390051 [TUS-4-L9](-)">
      <seq>aggaatttgtgaatcatggaggcgttattttcaaggtttatgtagctggggaacatgttaaatgtgtgaaaaggaggtcattgcctgacattccggaggagaaattgggaatgttagagaatctgatatcgttttcgcagatatctaatttaactgctcaagatcagaatgatgatacttttgctgaactgattgagaaggcggtgatgcctccgtcaagatttgtgacagatgtagccaatcagttgagggatgctttgaagttgcatctttttaactttgatatgattagagatgaaaaagttgggaatcgatatcttgttattgatatcaattatttccctggctatgctaaaatcccaaactatgagactatgatgactgcatttttcctagatattgcacgcgagaagctaaacaacgagtcccgttaggcctcttatgagatcattttagccctgtatactggttatacagttaagctcttttactgttttacctcagctggcagatgatgctgaagtaaatgtgaatcaaaagaggctaactgctcttatttcgtaaaactgtaaggtaaaagtctactgagttgtggagcaattgatgcgtttctctttcattctccttttttctttagtttagttaatgagatgtggaataatttggaaccggatgataatcatcaaagtttttactctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0113N10.1" temp_strand="-" temp_description="C06SLm0113N10.1  AC219227.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0113N10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="77973" stop="76674"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77673" g_stop="76974" g_length="700"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="699" r_length="699" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0113N10.1" gen_strand="-" ref_id="SGN-E390051" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>700</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0113N10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E390051" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77673" e_stop="76974"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAATTTGTGAATCATGGAGGCGTTATTTTCAAGGTTTATGTAGCTGGGGAACATGTTAAATGTGTGAAAAGGAGGTCATTGCCTGACATTCCGGAGGAGAAATTGGGAATGTTAGAGAATCTGATATCGTTTTCGCAGATATCTAATTTAACTGCTCAAGATCAGAATGATGATACTTTTGCTGAACTGATTGAGAAGGCGGTGATGCCTCCGTCAAGATTTGTGACAGATGTAGCCAATCAGTTGAGGGATGCTTTGAAGTTGCATCTTTTTAACTTTGATATGATTAGAGATGAAAAAGTTGGGAATCGATATCTTGTTATTGATATCAATTATTTCCCTGGCTATGCTAAAATCCCAAACTATGAGACTATGATGACTGCATTTTTCCTAGATATTGCACGCGAGAAGCTAAACAACGAGTCCCGTTAGGCCTCTTATGAGATCATTTTAGCCCTGTATACTGGTTATACAGTTAAGCTCTTTTACTGTTTTACCTCAGCTGGCAGATGATGCTGAAGTAAATGTGAATCAAAAGAGGCTAACTGCTCTTATTTCGTAAAACTGTAAGGTAAAAGTCTACTGAGTTTTGGAGCAATTGATGCGTTTCTCTTTCATTCTCCTTTTTTCTTTAGTTTAGTTAATGAGATGTGGAATAATTTGGAACCGGATGATAATACTTCAAAGTTTTTACTCTT</genome_strand>
        <mrna_strand>AGGAATTTGTGAATCATGGAGGCGTTATTTTCAAGGTTTATGTAGCTGGGGAACATGTTAAATGTGTGAAAAGGAGGTCATTGCCTGACATTCCGGAGGAGAAATTGGGAATGTTAGAGAATCTGATATCGTTTTCGCAGATATCTAATTTAACTGCTCAAGATCAGAATGATGATACTTTTGCTGAACTGATTGAGAAGGCGGTGATGCCTCCGTCAAGATTTGTGACAGATGTAGCCAATCAGTTGAGGGATGCTTTGAAGTTGCATCTTTTTAACTTTGATATGATTAGAGATGAAAAAGTTGGGAATCGATATCTTGTTATTGATATCAATTATTTCCCTGGCTATGCTAAAATCCCAAACTATGAGACTATGATGACTGCATTTTTCCTAGATATTGCACGCGAGAAGCTAAACAACGAGTCCCGTTAGGCCTCTTATGAGATCATTTTAGCCCTGTATACTGGTTATACAGTTAAGCTCTTTTACTGTTTTACCTCAGCTGGCAGATGATGCTGAAGTAAATGTGAATCAAAAGAGGCTAACTGCTCTTATTTCGTAAAACTGTAAGGTAAAAGTCTACTGAGTTGTGGAGCAATTGATGCGTTTCTCTTTCATTCTCCTTTTTTCTTTAGTTTAGTTAATGAGATGTGGAATAATTTGGAACCGGATGATAAT-CATCAAAGTTTTTACTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E550467" ref_strand="+" ref_description="SGN-E550467 [TUS-5-L9](-)">
      <seq>gaatttgtgaatcatggaggcgttattttcaaggtctatgtagctggggaacatgttaaatgtgtgaaaaggaggtcattgcctgacattccggaggagaaattgggaatgttagagaatctgatatcgttttcgcagatatctaatttaactgctcaagatcagaatgatgatacttttgctgaactgattgagaaggcggtgatgcctccgtcaagatttgtgacagatgtagccaatcagttgagggatgctttgaagttgcatctttttaactttgatatgattagagatgaaaaagttgggaatcgatatcttgttattgatatcaattatttccctggctatgctaaaatcccaaactatgagactatgatgactgcatttttcctagatattgcacgcgagaagctaaacaacgagtcccgttaggcctcttatgagatcattttagccctgtatactggttatacagttaagctcttttactgttttacctcagctggcagatgatgctgaagtaaatgtgaatcaaaagaggctaactgctcttatttcgtaaaactgtaaggtaaaagtctactgagttttggagcaattgatgcgtttctctttcattctccttttttctttagtttagttaatgagatgtggaataatttggaaccggatgata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0113N10.1" temp_strand="-" temp_description="C06SLm0113N10.1  AC219227.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0113N10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="77971" stop="76696"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77671" g_stop="76996" g_length="676"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="676" r_length="676" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0113N10.1" gen_strand="-" ref_id="SGN-E550467" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>676</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0113N10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E550467" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77671" e_stop="76996"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATTTGTGAATCATGGAGGCGTTATTTTCAAGGTTTATGTAGCTGGGGAACATGTTAAATGTGTGAAAAGGAGGTCATTGCCTGACATTCCGGAGGAGAAATTGGGAATGTTAGAGAATCTGATATCGTTTTCGCAGATATCTAATTTAACTGCTCAAGATCAGAATGATGATACTTTTGCTGAACTGATTGAGAAGGCGGTGATGCCTCCGTCAAGATTTGTGACAGATGTAGCCAATCAGTTGAGGGATGCTTTGAAGTTGCATCTTTTTAACTTTGATATGATTAGAGATGAAAAAGTTGGGAATCGATATCTTGTTATTGATATCAATTATTTCCCTGGCTATGCTAAAATCCCAAACTATGAGACTATGATGACTGCATTTTTCCTAGATATTGCACGCGAGAAGCTAAACAACGAGTCCCGTTAGGCCTCTTATGAGATCATTTTAGCCCTGTATACTGGTTATACAGTTAAGCTCTTTTACTGTTTTACCTCAGCTGGCAGATGATGCTGAAGTAAATGTGAATCAAAAGAGGCTAACTGCTCTTATTTCGTAAAACTGTAAGGTAAAAGTCTACTGAGTTTTGGAGCAATTGATGCGTTTCTCTTTCATTCTCCTTTTTTCTTTAGTTTAGTTAATGAGATGTGGAATAATTTGGAACCGGATGATA</genome_strand>
        <mrna_strand>GAATTTGTGAATCATGGAGGCGTTATTTTCAAGGTCTATGTAGCTGGGGAACATGTTAAATGTGTGAAAAGGAGGTCATTGCCTGACATTCCGGAGGAGAAATTGGGAATGTTAGAGAATCTGATATCGTTTTCGCAGATATCTAATTTAACTGCTCAAGATCAGAATGATGATACTTTTGCTGAACTGATTGAGAAGGCGGTGATGCCTCCGTCAAGATTTGTGACAGATGTAGCCAATCAGTTGAGGGATGCTTTGAAGTTGCATCTTTTTAACTTTGATATGATTAGAGATGAAAAAGTTGGGAATCGATATCTTGTTATTGATATCAATTATTTCCCTGGCTATGCTAAAATCCCAAACTATGAGACTATGATGACTGCATTTTTCCTAGATATTGCACGCGAGAAGCTAAACAACGAGTCCCGTTAGGCCTCTTATGAGATCATTTTAGCCCTGTATACTGGTTATACAGTTAAGCTCTTTTACTGTTTTACCTCAGCTGGCAGATGATGCTGAAGTAAATGTGAATCAAAAGAGGCTAACTGCTCTTATTTCGTAAAACTGTAAGGTAAAAGTCTACTGAGTTTTGGAGCAATTGATGCGTTTCTCTTTCATTCTCCTTTTTTCTTTAGTTTAGTTAATGAGATGTGGAATAATTTGGAACCGGATGATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E389906" ref_strand="+" ref_description="SGN-E389906 [TUS-4-L9]">
      <seq>ttcgttctggttacgtacttgcatcgaagaaagtttcaagctttattcaagattcactcatcaatcatgcccaagaaaatggtattgatttagtgccaatcgatcttgacaaaccattaatcgaacaaggtccttttgattgtatattccacaagctatatggtccagaatggaggaagcagttagaagaattcgcgcttcagaacccaaccgccattatagtagatccaatcgacgccattgaaaagcttcataatcggctcacaatgcttgacgtcgttaacgaattgaaaatcgccggagacagcgaaactatcggaatccctattcagattttcgttggagaaaattcagaatcccttttagacgctattactagtcaagggttacatttccctgtcattgctaagccgttgattgcgaatggctctgcggattctcatcaaatgtctttggttttgaagccggaagggttacaagggctgaaacccccaattgttttacaggaatttgtgaatcatggaggcgttattttcaaggtttatgtagctggggaacatgttaaatgtgtgaaaaggaggtcattgcctgacattccggaggagaaattgggaatgttagagaatctgatatcgttttcgcagatatctaatttaactgctncagatcagaatgatgatacttttgctgaactgattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0113N10.1" temp_strand="-" temp_description="C06SLm0113N10.1  AC219227.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0113N10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="78477" stop="77179"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78177" g_stop="77479" g_length="699"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="699" r_length="699" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0113N10.1" gen_strand="-" ref_id="SGN-E389906" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>699</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0113N10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E389906" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78177" e_stop="77479"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGTTTTGGTTACGTACTTGCATCGAAGAAAGTTTCAAGCTTTATTCAAGATTCACTCATCAATCATGCCCAAGAAAATGGTATTGATTTAGTGCCAATCGATCTTGACAAACCATTAATCGAACAAGGTCCTTTTGATTGTATATTCCACAAGCTATATGGTCCAGAATGGAGGAAGCAGTTAGAAGAATTCGCGCTTCAGAACCCAACCGCCATTATAGTAGATCCAATCGACGCCATTGAAAAGCTTCATAATCGGCTCACAATGCTTGACGTCGTTAACGAATTGAAAATCGCCGGAGACAGCGAAACTATCGGAATCCCTATTCAGATTTTCGTTGGAGAAAATTCAGAATCCCTTTTAGACGCTATTACTAGTCAAGGGTTACATTTCCCTGTCATTGCTAAGCCGTTGATTGCGAATGGCTCTGCGGATTCTCATCAAATGTCTTTGGTTTTGAAGCCGGAAGGGTTACAAGGGCTGAAACCCCCAATTGTTTTACAGGAATTTGTGAATCATGGAGGCGTTATTTTCAAGGTTTATGTAGCTGGGGAACATGTTAAATGTGTGAAAAGGAGGTCATTGCCTGACATTCCGGAGGAGAAATTGGGAATGTTAGAGAATCTGATATCGTTTTCGCAGATATCTAATTTAACTGCTCAAGATCAGAATGATGATACTTTTGCTGAACTGATTG</genome_strand>
        <mrna_strand>TTCGTTCTGGTTACGTACTTGCATCGAAGAAAGTTTCAAGCTTTATTCAAGATTCACTCATCAATCATGCCCAAGAAAATGGTATTGATTTAGTGCCAATCGATCTTGACAAACCATTAATCGAACAAGGTCCTTTTGATTGTATATTCCACAAGCTATATGGTCCAGAATGGAGGAAGCAGTTAGAAGAATTCGCGCTTCAGAACCCAACCGCCATTATAGTAGATCCAATCGACGCCATTGAAAAGCTTCATAATCGGCTCACAATGCTTGACGTCGTTAACGAATTGAAAATCGCCGGAGACAGCGAAACTATCGGAATCCCTATTCAGATTTTCGTTGGAGAAAATTCAGAATCCCTTTTAGACGCTATTACTAGTCAAGGGTTACATTTCCCTGTCATTGCTAAGCCGTTGATTGCGAATGGCTCTGCGGATTCTCATCAAATGTCTTTGGTTTTGAAGCCGGAAGGGTTACAAGGGCTGAAACCCCCAATTGTTTTACAGGAATTTGTGAATCATGGAGGCGTTATTTTCAAGGTTTATGTAGCTGGGGAACATGTTAAATGTGTGAAAAGGAGGTCATTGCCTGACATTCCGGAGGAGAAATTGGGAATGTTAGAGAATCTGATATCGTTTTCGCAGATATCTAATTTAACTGCTNCAGATCAGAATGATGATACTTTTGCTGAACTGATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E233363" ref_strand="+" ref_description="SGN-E233363 [cLED-9-C14]">
      <seq>tcgttttggttacgtacttgcatcgaagaaagtttcaagctttattcaagattcactcatcaatcatgcccaagaaaatggtattgatttagtgccaatcgatcttgacaaaccattaatcgaacaaggtccttttgattgtatattccacaagctatatggtccagaatggaggaagcagttagaagaattcgcgcttcagaacccaaccgccattatagtagatccaatcgacgccattgaaaagcttcataatcggctcacaatgcttgacgtcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0113N10.1" temp_strand="-" temp_description="C06SLm0113N10.1  AC219227.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0113N10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="78476" stop="77599"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78176" g_stop="77899" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="278" r_length="278" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0113N10.1" gen_strand="-" ref_id="SGN-E233363" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>278</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0113N10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E233363" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78176" e_stop="77899"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGTTTTGGTTACGTACTTGCATCGAAGAAAGTTTCAAGCTTTATTCAAGATTCACTCATCAATCATGCCCAAGAAAATGGTATTGATTTAGTGCCAATCGATCTTGACAAACCATTAATCGAACAAGGTCCTTTTGATTGTATATTCCACAAGCTATATGGTCCAGAATGGAGGAAGCAGTTAGAAGAATTCGCGCTTCAGAACCCAACCGCCATTATAGTAGATCCAATCGACGCCATTGAAAAGCTTCATAATCGGCTCACAATGCTTGACGTCG</genome_strand>
        <mrna_strand>TCGTTTTGGTTACGTACTTGCATCGAAGAAAGTTTCAAGCTTTATTCAAGATTCACTCATCAATCATGCCCAAGAAAATGGTATTGATTTAGTGCCAATCGATCTTGACAAACCATTAATCGAACAAGGTCCTTTTGATTGTATATTCCACAAGCTATATGGTCCAGAATGGAGGAAGCAGTTAGAAGAATTCGCGCTTCAGAACCCAACCGCCATTATAGTAGATCCAATCGACGCCATTGAAAAGCTTCATAATCGGCTCACAATGCTTGACGTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E393076" ref_strand="+" ref_description="SGN-E393076 [TUS-37-J4]">
      <seq>taaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaataaaaacagaatttatttttttttgtgtatatagcgagatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0113N10.1" temp_strand="+" temp_description="C06SLm0113N10.1  AC219227.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0113N10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="86504" stop="87400"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86804" g_stop="87126" g_length="323"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="325" r_length="325" r_score="0.916"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0113N10.1" gen_strand="+" ref_id="SGN-E393076" ref_strand="+">
        <total_alignment_score>0.916</total_alignment_score>
        <cumulative_length_of_scored_exons>323</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0113N10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E393076" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86804" e_stop="87126"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATAGCAAGAAGATATATG-TTTT-TCTCGCTTTATACAAAAACAGAAACACAATATATACACTTTTGTTGTATAAAGCTAGAAAAAATTGTATTTCACTGCAATTGTATAATTCACAATTGTATAATTCTTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAAATTATATAATTAAGTGTATAACACGAAGATATACATTTTTGCATGTGTATATACAATTTTCTCTCACTTTATACAAAACAGAAACAGAAATTATACACTTCTGTGTATAAAGCGAGAGAG</genome_strand>
        <mrna_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAAAAACAGAATTTATTTTTTTTTGTGTATATAGCGAGATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E393075" ref_strand="+" ref_description="SGN-E393075 [TUS-37-J2]">
      <seq>taaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaatagaaacagaggttttttttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0113N10.1" temp_strand="+" temp_description="C06SLm0113N10.1  AC219227.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0113N10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="86504" stop="87400"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86804" g_stop="87109" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="308" r_length="308" r_score="0.912"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0113N10.1" gen_strand="+" ref_id="SGN-E393075" ref_strand="+">
        <total_alignment_score>0.912</total_alignment_score>
        <cumulative_length_of_scored_exons>306</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0113N10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E393075" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86804" e_stop="87109"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATAGCAAGAAGATATATG-TTTT-TCTCGCTTTATACAAAAACAGAAACACAATATATACACTTTTGTTGTATAAAGCTAGAAAAAATTGTATTTCACTGCAATTGTATAATTCACAATTGTATAATTCTTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAAATTATATAATTAAGTGTATAACACGAAGATATACATTTTTGCATGTGTATATACAATTTTCTCTCACTTTATACAAAACAGAAACAGAAATTATACACTTCTG</genome_strand>
        <mrna_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAGAAACAGAGGTTTTTTTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E313766" ref_strand="+" ref_description="SGN-E313766 [cTOA-17-P17]">
      <seq>atttacagtggcatttgctatttttaaggagataaggtccgatgaattgacgacacaccactccgctcctcccgttttcttccattttcgtaaatcaagtatcgtaacaccataatctgatctctgttatctccaattttgggtcttgagattttgtttcctttatgtgagttaactttaatcaactgtttcttcacttactaatcttgaattccctaatttctgtactctttccttttctgtagttgttgtttttccatctgggtttgttgggtttactttcttttcttctgtttgtaattaatgagacctagggtttctgaagtgcattgtgtttgagcaagagttggtcaatcttgtgtggttacttgttgtactatactttttgaattagggaatggatgattgttgaaagtttaaattgtacccactataggaaaaaagttgttttttctgtaacaatcaagtgaaaaaggtaggatttttagcttcgaattcctta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0113N10.1" temp_strand="+" temp_description="C06SLm0113N10.1  AC219227.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0113N10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="87059" stop="88160"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87359" g_stop="87860" g_length="502"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="502" r_length="502" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0113N10.1" gen_strand="+" ref_id="SGN-E313766" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>502</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0113N10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E313766" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87359" e_stop="87860"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTACAGTGGCATTTGCTATTTTTAAGGAGATAAGGTCCGATGAATTGACGACACACCACTCCGCTCCTCCCGTTTTCTTCCATTTTCGTAAATCAAGTATCGTAACACCATAATCTGATCTCTGTTATCTCCAATTTTGGGTCTTGAGATTTTGTTTCCTTTATGTGAGTTAACTTTAATCAACTGTTTCTTCACTTACTAATCTTGAATTCCCTAATTTCTGTACTCTTTCCTTTTCTGTAGTTGTTGTTTTTCCATCTGGGTTTGTTGGGTTTACTTTCTTTTCTTCTGTTTGTAATTAATGAGACCTAGGGTTTCTGAAGTGCATTGTGTTTGAGCAAGAGTTGGTCAATCTTGTGTGGTTACTTGTTGTACTATACTTTTTGAATTAGGGAATGGATGATTGTTGAAAGTTTAAATTGTACCCACTATAGGAAAAAAGTTGTTTTTTCTGTAACAATCAAGTGAAAAAGGTAGGATTTTTAGCTTCGAATTCCTTA</genome_strand>
        <mrna_strand>ATTTACAGTGGCATTTGCTATTTTTAAGGAGATAAGGTCCGATGAATTGACGACACACCACTCCGCTCCTCCCGTTTTCTTCCATTTTCGTAAATCAAGTATCGTAACACCATAATCTGATCTCTGTTATCTCCAATTTTGGGTCTTGAGATTTTGTTTCCTTTATGTGAGTTAACTTTAATCAACTGTTTCTTCACTTACTAATCTTGAATTCCCTAATTTCTGTACTCTTTCCTTTTCTGTAGTTGTTGTTTTTCCATCTGGGTTTGTTGGGTTTACTTTCTTTTCTTCTGTTTGTAATTAATGAGACCTAGGGTTTCTGAAGTGCATTGTGTTTGAGCAAGAGTTGGTCAATCTTGTGTGGTTACTTGTTGTACTATACTTTTTGAATTAGGGAATGGATGATTGTTGAAAGTTTAAATTGTACCCACTATAGGAAAAAAGTTGTTTTTTCTGTAACAATCAAGTGAAAAAGGTAGGATTTTTAGCTTCGAATTCCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E331259" ref_strand="+" ref_description="SGN-E331259 [cTOD-6-F13]">
      <seq>tggcatttgctatttttaaggagataaggtccgatgaattgacgacgcaccactccgctcctcccgttttcttccattttcgtaaatcaagtatcgtaacaccataatctgatctctgttatctccaattttgggtcttgagattttgtttcctttatgtgagttaactttaatcaactgtttcttcacttactaatcttgaattccctaatttctgtactctttccttttctgtagttgttgtttttccatctgggtttgttgggtttactttcttttcttctgtttgtaattaatgagacctaaggtttctgaagtgcattgtgtttgagcaagagttggtcaatcttgtgtggttacttgttgtactatactttttgaattagggaatggatgattgttgaaagtttaaattgtacccactataggaaaaaagttgttttttctgtaacaatcaagtgaaaaaggtaggattttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0113N10.1" temp_strand="+" temp_description="C06SLm0113N10.1  AC219227.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0113N10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="87067" stop="88145"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87367" g_stop="87845" g_length="479"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="479" r_length="479" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0113N10.1" gen_strand="+" ref_id="SGN-E331259" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>479</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0113N10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E331259" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87367" e_stop="87845"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGCATTTGCTATTTTTAAGGAGATAAGGTCCGATGAATTGACGACACACCACTCCGCTCCTCCCGTTTTCTTCCATTTTCGTAAATCAAGTATCGTAACACCATAATCTGATCTCTGTTATCTCCAATTTTGGGTCTTGAGATTTTGTTTCCTTTATGTGAGTTAACTTTAATCAACTGTTTCTTCACTTACTAATCTTGAATTCCCTAATTTCTGTACTCTTTCCTTTTCTGTAGTTGTTGTTTTTCCATCTGGGTTTGTTGGGTTTACTTTCTTTTCTTCTGTTTGTAATTAATGAGACCTAGGGTTTCTGAAGTGCATTGTGTTTGAGCAAGAGTTGGTCAATCTTGTGTGGTTACTTGTTGTACTATACTTTTTGAATTAGGGAATGGATGATTGTTGAAAGTTTAAATTGTACCCACTATAGGAAAAAAGTTGTTTTTTCTGTAACAATCAAGTGAAAAAGGTAGGATTTTTA</genome_strand>
        <mrna_strand>TGGCATTTGCTATTTTTAAGGAGATAAGGTCCGATGAATTGACGACGCACCACTCCGCTCCTCCCGTTTTCTTCCATTTTCGTAAATCAAGTATCGTAACACCATAATCTGATCTCTGTTATCTCCAATTTTGGGTCTTGAGATTTTGTTTCCTTTATGTGAGTTAACTTTAATCAACTGTTTCTTCACTTACTAATCTTGAATTCCCTAATTTCTGTACTCTTTCCTTTTCTGTAGTTGTTGTTTTTCCATCTGGGTTTGTTGGGTTTACTTTCTTTTCTTCTGTTTGTAATTAATGAGACCTAAGGTTTCTGAAGTGCATTGTGTTTGAGCAAGAGTTGGTCAATCTTGTGTGGTTACTTGTTGTACTATACTTTTTGAATTAGGGAATGGATGATTGTTGAAAGTTTAAATTGTACCCACTATAGGAAAAAAGTTGTTTTTTCTGTAACAATCAAGTGAAAAAGGTAGGATTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E539957" ref_strand="+" ref_description="SGN-E539957 [TUS-59-P18]">
      <seq>ctatttttaaggagataaggtccgatgaattgacgacacaccactccgctcctcccgttttcttccattttcgtaaatcaagtatcgtaacaccataatctgatctctgttatctccaattttgggtcttgagattttgtttcctttatgtgagttaactttaatcaactgtttcttcacttactaatcttgaattccctaatttctgtactctttccttttctgtagttgttgtttttccatctgggtttgttgggtttactttcttttcttctgtttgtaattaatgagacctagggtttctgaagtgcattgtgtttgagcaagagttggtcaatcttgtgtggttacttgttgtactatactttttgaattagggaatggatgattgttgaaagtttaaattgtacccactataggaaaaaagttgttttttctgtaacaatcaagtgaaaaaggtaggatttttagcttcgaattccttattttcaagagggaggtttctaatttctttttcctttctggacaataagtgtgtgtggatttttgtgttggtttgaggttcctgctttctcattcttttgaggtatagccgtcagtgtgtaatctttttgctcatggtttgagctttatgtttttgtatgcatattactctatttttatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0113N10.1" temp_strand="+" temp_description="C06SLm0113N10.1  AC219227.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0113N10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="87076" stop="88339"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87376" g_stop="88039" g_length="664"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="664" r_length="664" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0113N10.1" gen_strand="+" ref_id="SGN-E539957" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>664</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0113N10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E539957" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87376" e_stop="88039"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTATTTTTAAGGAGATAAGGTCCGATGAATTGACGACACACCACTCCGCTCCTCCCGTTTTCTTCCATTTTCGTAAATCAAGTATCGTAACACCATAATCTGATCTCTGTTATCTCCAATTTTGGGTCTTGAGATTTTGTTTCCTTTATGTGAGTTAACTTTAATCAACTGTTTCTTCACTTACTAATCTTGAATTCCCTAATTTCTGTACTCTTTCCTTTTCTGTAGTTGTTGTTTTTCCATCTGGGTTTGTTGGGTTTACTTTCTTTTCTTCTGTTTGTAATTAATGAGACCTAGGGTTTCTGAAGTGCATTGTGTTTGAGCAAGAGTTGGTCAATCTTGTGTGGTTACTTGTTGTACTATACTTTTTGAATTAGGGAATGGATGATTGTTGAAAGTTTAAATTGTACCCACTATAGGAAAAAAGTTGTTTTTTCTGTAACAATCAAGTGAAAAAGGTAGGATTTTTAGCTTCGAATTCCTTATTTTCAAGAGGGAGGTTTCTAATTTCTTTTTCCTTTCTGGACAATAAGTGTGTGTGGATTTTTGTGTTGGTTTGAGGTTCCTGCTTTCTCATTCTTTTGAGGTATAGCCGTCAGTGTGTAATCTTTTTGCTCATGGTTTGAGCTTTATGTTTTTGTATGCATATTACTCTATTTTTATC</genome_strand>
        <mrna_strand>CTATTTTTAAGGAGATAAGGTCCGATGAATTGACGACACACCACTCCGCTCCTCCCGTTTTCTTCCATTTTCGTAAATCAAGTATCGTAACACCATAATCTGATCTCTGTTATCTCCAATTTTGGGTCTTGAGATTTTGTTTCCTTTATGTGAGTTAACTTTAATCAACTGTTTCTTCACTTACTAATCTTGAATTCCCTAATTTCTGTACTCTTTCCTTTTCTGTAGTTGTTGTTTTTCCATCTGGGTTTGTTGGGTTTACTTTCTTTTCTTCTGTTTGTAATTAATGAGACCTAGGGTTTCTGAAGTGCATTGTGTTTGAGCAAGAGTTGGTCAATCTTGTGTGGTTACTTGTTGTACTATACTTTTTGAATTAGGGAATGGATGATTGTTGAAAGTTTAAATTGTACCCACTATAGGAAAAAAGTTGTTTTTTCTGTAACAATCAAGTGAAAAAGGTAGGATTTTTAGCTTCGAATTCCTTATTTTCAAGAGGGAGGTTTCTAATTTCTTTTTCCTTTCTGGACAATAAGTGTGTGTGGATTTTTGTGTTGGTTTGAGGTTCCTGCTTTCTCATTCTTTTGAGGTATAGCCGTCAGTGTGTAATCTTTTTGCTCATGGTTTGAGCTTTATGTTTTTGTATGCATATTACTCTATTTTTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E288518" ref_strand="+" ref_description="SGN-E288518 [cLES-8-D8]">
      <seq>tatttttaaggagataaggtccgatgaattgacgacacaccactccgctcctcccgttttcttccattttcgtaaatcaagtatcgtaacaccataatctgatctctgttatctccaattttgggtcttgagattttgtttcctttatgtgagttaactttaatcaactgtttcttcacttactaatcttgaattccctaatttctgtactctttccttttctgtaagtggtgtttttccatctgggtttgttgggtttactttcttttcttctgtttgtaattaatgagacctagggtttctgaagtgcattgtgtttgagcaagagttggtcaatcttgtgtggttacttgttgtactatactttttgaattanggaatggatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0113N10.1" temp_strand="+" temp_description="C06SLm0113N10.1  AC219227.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0113N10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="87077" stop="88064"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87377" g_stop="87764" g_length="388"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="388" r_length="388" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0113N10.1" gen_strand="+" ref_id="SGN-E288518" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>388</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0113N10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E288518" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87377" e_stop="87764"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTTTTAAGGAGATAAGGTCCGATGAATTGACGACACACCACTCCGCTCCTCCCGTTTTCTTCCATTTTCGTAAATCAAGTATCGTAACACCATAATCTGATCTCTGTTATCTCCAATTTTGGGTCTTGAGATTTTGTTTCCTTTATGTGAGTTAACTTTAATCAACTGTTTCTTCACTTACTAATCTTGAATTCCCTAATTTCTGTACTCTTTCCTTTTCTGTAGTTGTTGTTTTTCCATCTGGGTTTGTTGGGTTTACTTTCTTTTCTTCTGTTTGTAATTAATGAGACCTAGGGTTTCTGAAGTGCATTGTGTTTGAGCAAGAGTTGGTCAATCTTGTGTGGTTACTTGTTGTACTATACTTTTTGAATTAGGGAATGGATGAT</genome_strand>
        <mrna_strand>TATTTTTAAGGAGATAAGGTCCGATGAATTGACGACACACCACTCCGCTCCTCCCGTTTTCTTCCATTTTCGTAAATCAAGTATCGTAACACCATAATCTGATCTCTGTTATCTCCAATTTTGGGTCTTGAGATTTTGTTTCCTTTATGTGAGTTAACTTTAATCAACTGTTTCTTCACTTACTAATCTTGAATTCCCTAATTTCTGTACTCTTTCCTTTTCTGTAAGTGGTGTTTTTCCATCTGGGTTTGTTGGGTTTACTTTCTTTTCTTCTGTTTGTAATTAATGAGACCTAGGGTTTCTGAAGTGCATTGTGTTTGAGCAAGAGTTGGTCAATCTTGTGTGGTTACTTGTTGTACTATACTTTTTGAATTANGGAATGGATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E573453" ref_strand="+" ref_description="SGN-E573453 [32766]">
      <seq>atttttgcggagataaggtccgatgaattgacgacacaccaccaccgctcctcccgttttcttccattttcgtcaatcaagcatcgtaaccccataatctgatctctgttaactccaatttttagtcgtgagattctgtttcctttatgtgagttaactttaatcaactgtttctacacttactaatcttgaactccctaatttctgtactctttccttttctgtagctgttgtttttccatctgggtttgttgggttttctttcttttcttctgttagtaattaatgagacctagggtttttgaagtgcattgtgttcgagcaagagttggtcaatcttgtttgattacttgttgtactatactttttgaattagggaacggttgtacccgctaaaggaaaatttttggtttttctgtaacaatcaagtgaaaaaggtaggatttttagcttccaattccttattttcaagaggaaggtttcttatttctttttcctttatggacaataagtgtgttgggatttttgtgttggtttgaggttcctgccttctcattcttttgaggtatagctgtcagtgtgtaatctttttgctcatggtttgagctttcttgttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0113N10.1" temp_strand="+" temp_description="C06SLm0113N10.1  AC219227.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0113N10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="87078" stop="88312"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87378" g_stop="88013" g_length="636"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="617" r_length="617" r_score="0.906"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0113N10.1" gen_strand="+" ref_id="SGN-E573453" ref_strand="+">
        <total_alignment_score>0.906</total_alignment_score>
        <cumulative_length_of_scored_exons>636</cumulative_length_of_scored_exons>
        <coverage percentage="1.031" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0113N10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E573453" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87378" e_stop="88013"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTTAAGGAGATAAGGTCCGATGAATTGACGACACACCA-CTCCGCTCCTCCCGTTTTCTTCCATTTTCGTAAATCAAGTATCGTAACACCATAATCTGATCTCTGTTATCTCCAATTTTGGGTCTTGAGATTTTGTTTCCTTTATGTGAGTTAACTTTAATCAACTGTTTCTTCACTTACTAATCTTGAATTCCCTAATTTCTGTACTCTTTCCTTTTCTGTAGTTGTTGTTTTTCCATCTGGGTTTGTTGGGTTTACTTTCTTTTCTTCTGTTTGTAATTAATGAGACCTAGGGTTTCTGAAGTGCATTGTGTTTGAGCAAGAGTTGGTCAATCTTGTGTGGTTACTTGTTGTACTATACTTTTTGAATTAGGGAATGGATGATTGTTGAAAGTTTAAATTGTACCCACTATAGGAAAAAAGTTGTTTTTTCTGTAACAATCAAGTGAAAAAGGTAGGATTTTTAGCTTCGAATTCCTTATTTTCAAGAGGGAGGTTTCTAATTTCTTTTTCCTTTCTGGACAATAAGTGTGTGTGGATTTTTGTGTTGGTTTGAGGTTCCTGCTTTCTCATTCTTTTGAGGTATAGCCGTCAGTGTGTAATCTTTTTGCTCATGGTTTGAGCTTTATGTTTT</genome_strand>
        <mrna_strand>ATTTTTGCGGAGATAAGGTCCGATGAATTGACGACACACCACCACCGCTCCTCCCGTTTTCTTCCATTTTCGTCAATCAAGCATCGTAACCCCATAATCTGATCTCTGTTAACTCCAATTTTTAGTCGTGAGATTCTGTTTCCTTTATGTGAGTTAACTTTAATCAACTGTTTCTACACTTACTAATCTTGAACTCCCTAATTTCTGTACTCTTTCCTTTTCTGTAGCTGTTGTTTTTCCATCTGGGTTTGTTGGGTTTTCTTTCTTTTCTTCTGTTAGTAATTAATGAGACCTAGGGTTTTTGAAGTGCATTGTGTTCGAGCAAGAGTTGGTCAATCTTGTTTGATTACTTGTTGTACTATACTTTTTGAATTAGGG-A---ACG---GTT----G---------TACCCGCTAAAGGAAAATTTTTGGTTTTTCTGTAACAATCAAGTGAAAAAGGTAGGATTTTTAGCTTCCAATTCCTTATTTTCAAGAGGAAGGTTTCTTATTTCTTTTTCCTTTATGGACAATAAGTGTGTTGGGATTTTTGTGTTGGTTTGAGGTTCCTGCCTTCTCATTCTTTTGAGGTATAGCTGTCAGTGTGTAATCTTTTTGCTCATGGTTTGAGCTTTCTTGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E745914" ref_strand="+" ref_description="SGN-E745914 [GI|47105488]">
      <seq>gagctttatgtttttgtatgcatattactctatttttatcagttttgggaattgaacattttggggtagtcagatctgctgtttaaatggattttacgggtgaagctggttttgctggagggaatgtgatccccgattccacagccggggttggtggttatgacagttggggtcctaatttttctgaccaggcagtttgggctactgaggatgattataaagcctggaacagtggtccctattgtgaaaccccttccaattccagtcaggatggtaggcattcacaaaaccggtcaggcagtgagcctcccaacaagaagtcaaggaatgtgcaggattcagatgctcgcattatagtcaccagtagctctaaagcaatcggaaagatgttctttaaaacgaagttgtgttgtaagttccgtgccggtgtctgcccctatgttactaattgtaactttgctcatggaatagaggagcttcgcaaaccaccacctaattggcaagagatagtagctgcacatgaaaatgagcggggagtaatggtggaactgagagaagaacaccagataccaatattgagctctcctgatttacgtggagagtctcaaaggtccgctaaagggaggcactgcaagaagttctacactgaagagggatgtccttatggagatagttgcactttccttcatgatgaacaatcaaggtctagagagagtgttgcaataagtgtgactcctactgttggtggatttggaaataatgctactggagcaacccaaaaaccttcaaactggaagacaagaatttgtaataagtgggagactactggctattgcccgtttggcagcaagtgtcattttgctcatggtgtggcagaactgaacaagtttggtggaggacctgcggaaacagatggcaaagattatgtctctgttcctccagaattaaagcagggcggggttccatcaagagcaacagaaagtacagtgccctcaaccattccagcactccacacagatgtttatcatctggggcagggtgttcaggtacaaaggccaactggcatagctgatagacctggccagaggttctttcaaaaatggaaaggcccggataagattagtaaaatatatggcgactggattgatgacatcgagtgaaggagttgtcataattagctactgatctgtttagctagacacaaatagccgaggttagctttcagccttgcattcaaaggaattttaccctagtgttttttcgcccctccgaaacttgttgtattagagctacaaactagatagctgctcgggcagtcgatgtttaatcacttttctgtattactcacaacttgtttgtaagaatgatgattggctataatctctatacttgagccttttgtcttgcgtggagatattcaaacataatttgtatttcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0113N10.1" temp_strand="+" temp_description="C06SLm0113N10.1  AC219227.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0113N10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="87700" stop="91530"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88000" g_stop="88875" g_length="876"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="876" r_length="876" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88876" i_stop="90667" i_length="1792">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90668" g_stop="91227" g_length="560"/>
          <reference_exon_boundary r_type="cDNA" r_start="877" r_stop="1436" r_length="560" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1438" polyA_stop="1454"/>
      <MATCH_line gen_id="C06SLm0113N10.1" gen_strand="+" ref_id="SGN-E745914" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1436</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0113N10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E745914" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88000" e_stop="88875"/>
          <exon e_start="90668" e_stop="91227"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCTTTATGTTTTTGTATGCATATTACTCTATTTTTATCAGTTTTGGGAATTGAACATTTTGGGGTAGTCAGATCTGCTGTTTAAATGGATTTTACGGGTGAAGCTGGTTTTGCTGGAGGGAATGTGATCCCCGATTCCACAGCCGGGGTTGGTGGTTATGACAGTTGGGGTCCTAATTTTTCTGACCAGGCAGTTTGGGCTACTGAGGATGATTATAAAGCCTGGAACAGTGGTCCCTATTGTGAAACCCCTTCCAATTCCAGTCAGGATGGTAGGCATTCACAAAACCGGTCAGGCAGTGAGCCTCCCAACAAGAAGTCAAGGAATGTGCAGGATTCAGATGCTCGCATTATAGTCACCAGTAGCTCTAAAGCAATCGGAAAGATGTTCTTTAAAACGAAGTTGTGTTGTAAGTTCCGTGCCGGTGTCTGCCCCTATGTTACTAATTGTAACTTTGCTCATGGAATAGAGGAGCTTCGCAAACCACCACCTAATTGGCAAGAGATAGTAGCTGCACATGAAAATGAGCGGGGAGTAATGGTGGAACTGAGAGAAGAACACCAGATACCAATATTGAGCTCTCCTGATTTACGTGGAGAGTCTCAAAGGTCCGCTAAAGGGAGGCACTGCAAGAAGTTCTACACTGAAGAGGGATGTCCTTATGGAGATAGTTGCACTTTCCTTCATGATGAACAATCAAGGTCTAGAGAGAGTGTTGCAATAAGTGTGACTCCTACTGTTGGTGGATTTGGAAATAATGCTACTGGAGCAACCCAAAAACCTTCAAACTGGAAGACAAGAATTTGTAATAAGTGGGAGACTACTGGCTATTGCCCGTTTGGCAGCAAGTGTCATTTTGCTCATGGTGTGGCAGGTATGGATATAACTTTATGCTTATTTCTGGTGTACGGAGATATGATATCAATGTATACATTAAAATTCTGAAGATTGATAATTTATAATTGATTTGGCTTGCTGCAATTGTTGATCTGCTTGGTTAATTTTGTTTAGGTGAAGATCCAAGTGGATAAGTGCATTAAGTTATTTAAGGTTCCCTTTATTTTTTATGGTGGACAGCAGCTTACCTTTTTTTTCAGTGGATCACTTTTGGCTTACTGAATGCCATGTGAATGCATGTTGATGAGTCTTTTAAGGTGCCTTTTATCTTTTATGGTGGACAGAGACTTGCCTTATCATCATAAAAGTGTAAACTTGAAATTAGACAAGCTGAAAATACCAGTTAAGAGACTTAAGTTTCTTTCAGTATAGGATGACTGTAGTTCTCTTTGTTATGCTCATTAATACTTCCGCACCACTTCTATCTCCTCTTCTGTTGAAGCCATGCTAGCAAAACCTCTTTTAAACTCTGGTCGCAACAAGATAAAATTTACATCTATTGTAAATTCTTTGCCAAACCTATGTAAATCTCTCAACCTATGAGGTTGTTGAAAATTTTGGTGGGAATGGAAATTACAGGATGTGCTTTTCTACAACCCCTTTGTTGGATAGATGGAAGATTAGTTTTGTAATGGGTATGATTGATGGGAATGCTATTCTTGGTTCACTGGGAAATGTCATTGACACTATAATTTTAGTGTTGATCTTAGTTATCTATCTTACTTGTGTTTGCCATATCAATTAACCTAATATTTCTTGTTCTCAACTATCTGCTTAATAACTATACTCACTCTTGTCATCGTCCTTCTCTTTATTGATACCTCTATATATGAGATTATCTGTTGAATGACATCAGATACCGAATTCATTACATTTTTTATGTGTGGTTATAATATTGGGTAAATATGTATGACTTTACATAGATTAGGCTTTAAATACTCGTGCCAAAGGATAAATACGACTTTGTAACTATTAGGGTATGCCCTTTATTTTGATTAACTTTTGGTGTACTCGTGTATACAGATAATCCATATCTTTTTTCAAGTCTCTTTACTTTTTTGTATACAGCATACTTCTTTTCCACAAATATCAATAAAATATTGCCCCATCCTTCCATCGTTGCAATTTATGCGTCTTACACTCTTACCTTCCTTTTTAATCTCTTTAAAAATGAATGATACTTTCTATATCTGGTAACTCTTTAATTTTAAGTTTCTAACATCTCACATATCATGTTTAAGATGACAAGATTCTAAGAACATTTTAGTACATTATACACATCTTTAGTTTAAGACCGCAAGGTTCAAACTATGTAATTATTTTTGGAAGGAAGAAGAAGACAGAAACTTACTGAATCTTGGTGGTATACGTTTTATGTCAATATTTTCATGTGCAATAGTTTAGGTATCAACTTCATAAATTTCACGAAAATGCTGACATAATCATGACAATAGTTTTGCTACTAAAATAACCTTAAGTGTCAGGGAAGCAGTTGAATGTTGACTAAAAGTTGGTACTCTTGGAGCTGTCTGGTTTTGTGGAAAAGAGTGTCTGCATGATTGTTAAGGGTAAAGATAATCTGCATGATTGTATGACCTATATGCTAAGACTCTTAAATGTGCAATTGTTTGGTCTTGTTTCAGTTAATGGTTCCGAGATTTTCTGTGTTAGCTATTGCTGTCCTGTTTCATTTGACCAGACTACAAAATTTTGCTGGATGCTTCCGTTTGATCCTGTGCAAACTACTAACTTGTGTTATTTTGTGGCAGAACTGAACAAGTTTGGTGGAGGACCTGCGGAAACAGATGGCAAAGATTATGTCTCTGTTCCTCCAGAATTAAAGCAGGGCGGGGTTCCATCAAGAGCAACAGAAAGTACAGTGCCCTCAACCATTCCAGCACTCCACACAGATGTTTATCATCTGGGGCAGGGTGTTCAGGTACAAAGGCCAACTGGCATAGCTGATAGACCTGGCCAGAGGTTCTTTCAAAAATGGAAAGGCCCGGATAAGATTAGTAAAATATATGGCGACTGGATTGATGACATCGAGTGAAGGAGTTGTCATAATTAGCTACTGATCTGTTTAGCTAGACACAAATAGCCGAGGTTAGCTTTCAGCCTTGCATTCAAAGGAATTTTACCCTAGTGTTTTTTCGCCCCTCCGAAACTTGTTGTATTAGAGCTACAAACTAGATAGCTGCTCGGGCAGTCGATGTTTAATCACTTTTCTGTATTACTCACAACTTGTTTGTAAGAATGATGATTGGCTATAATCTCTATACTTGAGCCTTTTGTCTTGCGTGGAGATATTCAAACATAATTTGTATTT</genome_strand>
        <mrna_strand>GAGCTTTATGTTTTTGTATGCATATTACTCTATTTTTATCAGTTTTGGGAATTGAACATTTTGGGGTAGTCAGATCTGCTGTTTAAATGGATTTTACGGGTGAAGCTGGTTTTGCTGGAGGGAATGTGATCCCCGATTCCACAGCCGGGGTTGGTGGTTATGACAGTTGGGGTCCTAATTTTTCTGACCAGGCAGTTTGGGCTACTGAGGATGATTATAAAGCCTGGAACAGTGGTCCCTATTGTGAAACCCCTTCCAATTCCAGTCAGGATGGTAGGCATTCACAAAACCGGTCAGGCAGTGAGCCTCCCAACAAGAAGTCAAGGAATGTGCAGGATTCAGATGCTCGCATTATAGTCACCAGTAGCTCTAAAGCAATCGGAAAGATGTTCTTTAAAACGAAGTTGTGTTGTAAGTTCCGTGCCGGTGTCTGCCCCTATGTTACTAATTGTAACTTTGCTCATGGAATAGAGGAGCTTCGCAAACCACCACCTAATTGGCAAGAGATAGTAGCTGCACATGAAAATGAGCGGGGAGTAATGGTGGAACTGAGAGAAGAACACCAGATACCAATATTGAGCTCTCCTGATTTACGTGGAGAGTCTCAAAGGTCCGCTAAAGGGAGGCACTGCAAGAAGTTCTACACTGAAGAGGGATGTCCTTATGGAGATAGTTGCACTTTCCTTCATGATGAACAATCAAGGTCTAGAGAGAGTGTTGCAATAAGTGTGACTCCTACTGTTGGTGGATTTGGAAATAATGCTACTGGAGCAACCCAAAAACCTTCAAACTGGAAGACAAGAATTTGTAATAAGTGGGAGACTACTGGCTATTGCCCGTTTGGCAGCAAGTGTCATTTTGCTCATGGTGTGGCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTGAACAAGTTTGGTGGAGGACCTGCGGAAACAGATGGCAAAGATTATGTCTCTGTTCCTCCAGAATTAAAGCAGGGCGGGGTTCCATCAAGAGCAACAGAAAGTACAGTGCCCTCAACCATTCCAGCACTCCACACAGATGTTTATCATCTGGGGCAGGGTGTTCAGGTACAAAGGCCAACTGGCATAGCTGATAGACCTGGCCAGAGGTTCTTTCAAAAATGGAAAGGCCCGGATAAGATTAGTAAAATATATGGCGACTGGATTGATGACATCGAGTGAAGGAGTTGTCATAATTAGCTACTGATCTGTTTAGCTAGACACAAATAGCCGAGGTTAGCTTTCAGCCTTGCATTCAAAGGAATTTTACCCTAGTGTTTTTTCGCCCCTCCGAAACTTGTTGTATTAGAGCTACAAACTAGATAGCTGCTCGGGCAGTCGATGTTTAATCACTTTTCTGTATTACTCACAACTTGTTTGTAAGAATGATGATTGGCTATAATCTCTATACTTGAGCCTTTTGTCTTGCGTGGAGATATTCAAACATAATTTGTATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E247604" ref_strand="+" ref_description="SGN-E247604 [cLEF-42-P1]">
      <seq>cagttggggtcctaatttttctgaccaggcagtttgggctactgaggatgattataaagcctggaacagtggtccctattgtgaaaccccttccaattccagtcaggatggtaggcattcacaaaaccggtcaggcagtgagcctcccaacaagaagtcaaggaatgtgcaggattcagatgctcgcattatagtcaccagtagctctaaagcaatcggaaagatgttctttaaaacgaagttgtgttgtaagttccgtgccggtgtctgcccctatgttactaattgtaactttgctcatggaatagaggagcttcgcaaaccaccacctaattggcaagagatagtagctgcacatgaaaatgagcggggagtaatggtggaactgagagaagaacaccagataccaatattgagctctcctgatttacgtggagagtctcaaaggtccgctaaagggaggcactgcaagaagttctacactgaagagggatgtccttatggagatagttgcactttccttcatgatgaacaatcaaggtctagagagagtgttgcaataagtgtgactcctactgttggtggatttgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0113N10.1" temp_strand="+" temp_description="C06SLm0113N10.1  AC219227.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0113N10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="87863" stop="89054"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88163" g_stop="88754" g_length="592"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="592" r_length="592" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0113N10.1" gen_strand="+" ref_id="SGN-E247604" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>592</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0113N10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E247604" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88163" e_stop="88754"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGTTGGGGTCCTAATTTTTCTGACCAGGCAGTTTGGGCTACTGAGGATGATTATAAAGCCTGGAACAGTGGTCCCTATTGTGAAACCCCTTCCAATTCCAGTCAGGATGGTAGGCATTCACAAAACCGGTCAGGCAGTGAGCCTCCCAACAAGAAGTCAAGGAATGTGCAGGATTCAGATGCTCGCATTATAGTCACCAGTAGCTCTAAAGCAATCGGAAAGATGTTCTTTAAAACGAAGTTGTGTTGTAAGTTCCGTGCCGGTGTCTGCCCCTATGTTACTAATTGTAACTTTGCTCATGGAATAGAGGAGCTTCGCAAACCACCACCTAATTGGCAAGAGATAGTAGCTGCACATGAAAATGAGCGGGGAGTAATGGTGGAACTGAGAGAAGAACACCAGATACCAATATTGAGCTCTCCTGATTTACGTGGAGAGTCTCAAAGGTCCGCTAAAGGGAGGCACTGCAAGAAGTTCTACACTGAAGAGGGATGTCCTTATGGAGATAGTTGCACTTTCCTTCATGATGAACAATCAAGGTCTAGAGAGAGTGTTGCAATAAGTGTGACTCCTACTGTTGGTGGATTTGGA</genome_strand>
        <mrna_strand>CAGTTGGGGTCCTAATTTTTCTGACCAGGCAGTTTGGGCTACTGAGGATGATTATAAAGCCTGGAACAGTGGTCCCTATTGTGAAACCCCTTCCAATTCCAGTCAGGATGGTAGGCATTCACAAAACCGGTCAGGCAGTGAGCCTCCCAACAAGAAGTCAAGGAATGTGCAGGATTCAGATGCTCGCATTATAGTCACCAGTAGCTCTAAAGCAATCGGAAAGATGTTCTTTAAAACGAAGTTGTGTTGTAAGTTCCGTGCCGGTGTCTGCCCCTATGTTACTAATTGTAACTTTGCTCATGGAATAGAGGAGCTTCGCAAACCACCACCTAATTGGCAAGAGATAGTAGCTGCACATGAAAATGAGCGGGGAGTAATGGTGGAACTGAGAGAAGAACACCAGATACCAATATTGAGCTCTCCTGATTTACGTGGAGAGTCTCAAAGGTCCGCTAAAGGGAGGCACTGCAAGAAGTTCTACACTGAAGAGGGATGTCCTTATGGAGATAGTTGCACTTTCCTTCATGATGAACAATCAAGGTCTAGAGAGAGTGTTGCAATAAGTGTGACTCCTACTGTTGGTGGATTTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E539954" ref_strand="+" ref_description="SGN-E539954 [TUS-59-P18](-)">
      <seq>tttccttcatgatgaacaatcaaggtctagagagagtgttgcaataagtgtgactcctactgttggtggatttggaaataatgctactggagcaacccaaaaaccttcaaactggaagacaagaatttgtaataagtgggagactactggctattgcccgtttggcagcaagtgtcattttgctcatggtgtggcagaactgaacaagtttggtggaggacctgcggaaacagatggcaaagattatgtctctgttcctccagaattaaagcagggcggggttccatcaagagcaacagaaagtacagtgccctcaaccattccagcactccacacagatgtttatcatctggggcagggtgttcaggtacaaaggccaactggcatagctgatagacctggccagaggttctttcaaaaatggaaaggcccggataagattagtaaaatatatggcgactggattgatgacatcgagtgaaggagttgtcataattagctactgatctgtttagctagacacaaatagccgaggttagctttcagccttgcattcaaaggaattttaccctagtgttttttcgcccctccgaaacttgttgtattagagctacaaactagatagctgctcgggcagtcgatgtttaatcacttttctgtattactcacaacttgtttgtaagaatgatgattggctataatctctatacttgagccttttgtcttgcgtggagatattcaaacataatttgtatttgaacttgtgacttgttatatacccgatttcacttccaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0113N10.1" temp_strand="+" temp_description="C06SLm0113N10.1  AC219227.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0113N10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="88379" stop="91570"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88679" g_stop="88875" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="197" r_length="197" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88876" i_stop="90667" i_length="1792">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90668" g_stop="91275" g_length="608"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="804" r_length="607" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0113N10.1" gen_strand="+" ref_id="SGN-E539954" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>805</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0113N10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E539954" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88679" e_stop="88875"/>
          <exon e_start="90668" e_stop="91275"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCCTTCATGATGAACAATCAAGGTCTAGAGAGAGTGTTGCAATAAGTGTGACTCCTACTGTTGGTGGATTTGGAAATAATGCTACTGGAGCAACCCAAAAACCTTCAAACTGGAAGACAAGAATTTGTAATAAGTGGGAGACTACTGGCTATTGCCCGTTTGGCAGCAAGTGTCATTTTGCTCATGGTGTGGCAGGTATGGATATAACTTTATGCTTATTTCTGGTGTACGGAGATATGATATCAATGTATACATTAAAATTCTGAAGATTGATAATTTATAATTGATTTGGCTTGCTGCAATTGTTGATCTGCTTGGTTAATTTTGTTTAGGTGAAGATCCAAGTGGATAAGTGCATTAAGTTATTTAAGGTTCCCTTTATTTTTTATGGTGGACAGCAGCTTACCTTTTTTTTCAGTGGATCACTTTTGGCTTACTGAATGCCATGTGAATGCATGTTGATGAGTCTTTTAAGGTGCCTTTTATCTTTTATGGTGGACAGAGACTTGCCTTATCATCATAAAAGTGTAAACTTGAAATTAGACAAGCTGAAAATACCAGTTAAGAGACTTAAGTTTCTTTCAGTATAGGATGACTGTAGTTCTCTTTGTTATGCTCATTAATACTTCCGCACCACTTCTATCTCCTCTTCTGTTGAAGCCATGCTAGCAAAACCTCTTTTAAACTCTGGTCGCAACAAGATAAAATTTACATCTATTGTAAATTCTTTGCCAAACCTATGTAAATCTCTCAACCTATGAGGTTGTTGAAAATTTTGGTGGGAATGGAAATTACAGGATGTGCTTTTCTACAACCCCTTTGTTGGATAGATGGAAGATTAGTTTTGTAATGGGTATGATTGATGGGAATGCTATTCTTGGTTCACTGGGAAATGTCATTGACACTATAATTTTAGTGTTGATCTTAGTTATCTATCTTACTTGTGTTTGCCATATCAATTAACCTAATATTTCTTGTTCTCAACTATCTGCTTAATAACTATACTCACTCTTGTCATCGTCCTTCTCTTTATTGATACCTCTATATATGAGATTATCTGTTGAATGACATCAGATACCGAATTCATTACATTTTTTATGTGTGGTTATAATATTGGGTAAATATGTATGACTTTACATAGATTAGGCTTTAAATACTCGTGCCAAAGGATAAATACGACTTTGTAACTATTAGGGTATGCCCTTTATTTTGATTAACTTTTGGTGTACTCGTGTATACAGATAATCCATATCTTTTTTCAAGTCTCTTTACTTTTTTGTATACAGCATACTTCTTTTCCACAAATATCAATAAAATATTGCCCCATCCTTCCATCGTTGCAATTTATGCGTCTTACACTCTTACCTTCCTTTTTAATCTCTTTAAAAATGAATGATACTTTCTATATCTGGTAACTCTTTAATTTTAAGTTTCTAACATCTCACATATCATGTTTAAGATGACAAGATTCTAAGAACATTTTAGTACATTATACACATCTTTAGTTTAAGACCGCAAGGTTCAAACTATGTAATTATTTTTGGAAGGAAGAAGAAGACAGAAACTTACTGAATCTTGGTGGTATACGTTTTATGTCAATATTTTCATGTGCAATAGTTTAGGTATCAACTTCATAAATTTCACGAAAATGCTGACATAATCATGACAATAGTTTTGCTACTAAAATAACCTTAAGTGTCAGGGAAGCAGTTGAATGTTGACTAAAAGTTGGTACTCTTGGAGCTGTCTGGTTTTGTGGAAAAGAGTGTCTGCATGATTGTTAAGGGTAAAGATAATCTGCATGATTGTATGACCTATATGCTAAGACTCTTAAATGTGCAATTGTTTGGTCTTGTTTCAGTTAATGGTTCCGAGATTTTCTGTGTTAGCTATTGCTGTCCTGTTTCATTTGACCAGACTACAAAATTTTGCTGGATGCTTCCGTTTGATCCTGTGCAAACTACTAACTTGTGTTATTTTGTGGCAGAACTGAACAAGTTTGGTGGAGGACCTGCGGAAACAGATGGCAAAGATTATGTCTCTGTTCCTCCAGAATTAAAGCAGGGCGGGGTTCCATCAAGAGCAACAGAAAGTACAGTGCCCTCAACCATTCCAGCACTCCACACAGATGTTTATCATCTGGGGCAGGGTGTTCAGGTACAAAGGCCAACTGGCATAGCTGATAGACCTGGCCAGAGGTTCTTTCAAAAATGGAAAGGCCCGGATAAGATTAGTAAAATATATGGCGACTGGATTGATGACATCGAGTGAAGGAGTTGTCATAATTAGCTACTGATCTGTTTAGCTAGACACAAATAGCCGAGGTTAGCTTTCAGCCTTGCATTCAAAGGAATTTTACCCTAGTGTTTTTTCGCCCCTCCGAAACTTGTTGTATTAGAGCTACAAACTAGATAGCTGCTCGGGCAGTCGATGTTTAATCACTTTTCTGTATTACTCACAACTTGTTTGTAAGAATGATGATTGGCTATAATCTCTATACTTGAGCCTTTTGTCTTGCGTGGAGATATTCAAACATAATTTGTATTTGAACTTGTGACTTGTTGTTATACCCGATTTCACTTCCTATACAGCTTT</genome_strand>
        <mrna_strand>TTTCCTTCATGATGAACAATCAAGGTCTAGAGAGAGTGTTGCAATAAGTGTGACTCCTACTGTTGGTGGATTTGGAAATAATGCTACTGGAGCAACCCAAAAACCTTCAAACTGGAAGACAAGAATTTGTAATAAGTGGGAGACTACTGGCTATTGCCCGTTTGGCAGCAAGTGTCATTTTGCTCATGGTGTGGCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTGAACAAGTTTGGTGGAGGACCTGCGGAAACAGATGGCAAAGATTATGTCTCTGTTCCTCCAGAATTAAAGCAGGGCGGGGTTCCATCAAGAGCAACAGAAAGTACAGTGCCCTCAACCATTCCAGCACTCCACACAGATGTTTATCATCTGGGGCAGGGTGTTCAGGTACAAAGGCCAACTGGCATAGCTGATAGACCTGGCCAGAGGTTCTTTCAAAAATGGAAAGGCCCGGATAAGATTAGTAAAATATATGGCGACTGGATTGATGACATCGAGTGAAGGAGTTGTCATAATTAGCTACTGATCTGTTTAGCTAGACACAAATAGCCGAGGTTAGCTTTCAGCCTTGCATTCAAAGGAATTTTACCCTAGTGTTTTTTCGCCCCTCCGAAACTTGTTGTATTAGAGCTACAAACTAGATAGCTGCTCGGGCAGTCGATGTTTAATCACTTTTCTGTATTACTCACAACTTGTTTGTAAGAATGATGATTGGCTATAATCTCTATACTTGAGCCTTTTGTCTTGCGTGGAGATATTCAAACATAATTTGTATTTGAACTTGTGACTTGTT-ATATACCCGATTTCACTTCCAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E343771" ref_strand="+" ref_description="SGN-E343771 [cTOF-12-C1]">
      <seq>tttctttcagtataggatgactgtagttctctttgttatgctcattaatacttccgcaccacttctatctcctcttctgttgaagccatgctagcaaaacctcttttaaactctggtcgcaacaagataaaatttacatctattgtaaattctttgccaaacctatgtaaatctctcaacctatgaggttgttgaaaattttggtgggaatggaaattacaggatgtgcttttctacaacccctttgttggatagatggaagattagttttgtaatgggtatgattgatgggaatgctattcttggttcactgggaaatgtcattgacactataattttagtgttgatcttagttatctatcttacttgtgtttgccatatcaattaacctaatatttcttgttctcaactatctgcttaataactatactcactcttgtcatcgtccttctctttattgatacctctatatatgagattatctgttgaatgacatcagataccgaattcattacattttttatgtgtggttataatattgggtaaatatgtatgactntacatagattangctttaaatactcgtgccaaaggataaatacgactttgtaactattagggtatgccctttattttgattaactttttgtgtactcgtgtatacagataatccatatcttttttcaagtctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0113N10.1" temp_strand="+" temp_description="C06SLm0113N10.1  AC219227.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0113N10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="88956" stop="90247"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89256" g_stop="89947" g_length="692"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="692" r_length="692" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0113N10.1" gen_strand="+" ref_id="SGN-E343771" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>692</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0113N10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E343771" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89256" e_stop="89947"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTTTCAGTATAGGATGACTGTAGTTCTCTTTGTTATGCTCATTAATACTTCCGCACCACTTCTATCTCCTCTTCTGTTGAAGCCATGCTAGCAAAACCTCTTTTAAACTCTGGTCGCAACAAGATAAAATTTACATCTATTGTAAATTCTTTGCCAAACCTATGTAAATCTCTCAACCTATGAGGTTGTTGAAAATTTTGGTGGGAATGGAAATTACAGGATGTGCTTTTCTACAACCCCTTTGTTGGATAGATGGAAGATTAGTTTTGTAATGGGTATGATTGATGGGAATGCTATTCTTGGTTCACTGGGAAATGTCATTGACACTATAATTTTAGTGTTGATCTTAGTTATCTATCTTACTTGTGTTTGCCATATCAATTAACCTAATATTTCTTGTTCTCAACTATCTGCTTAATAACTATACTCACTCTTGTCATCGTCCTTCTCTTTATTGATACCTCTATATATGAGATTATCTGTTGAATGACATCAGATACCGAATTCATTACATTTTTTATGTGTGGTTATAATATTGGGTAAATATGTATGACTTTACATAGATTAGGCTTTAAATACTCGTGCCAAAGGATAAATACGACTTTGTAACTATTAGGGTATGCCCTTTATTTTGATTAACTTTTGGTGTACTCGTGTATACAGATAATCCATATCTTTTTTCAAGTCTC</genome_strand>
        <mrna_strand>TTTCTTTCAGTATAGGATGACTGTAGTTCTCTTTGTTATGCTCATTAATACTTCCGCACCACTTCTATCTCCTCTTCTGTTGAAGCCATGCTAGCAAAACCTCTTTTAAACTCTGGTCGCAACAAGATAAAATTTACATCTATTGTAAATTCTTTGCCAAACCTATGTAAATCTCTCAACCTATGAGGTTGTTGAAAATTTTGGTGGGAATGGAAATTACAGGATGTGCTTTTCTACAACCCCTTTGTTGGATAGATGGAAGATTAGTTTTGTAATGGGTATGATTGATGGGAATGCTATTCTTGGTTCACTGGGAAATGTCATTGACACTATAATTTTAGTGTTGATCTTAGTTATCTATCTTACTTGTGTTTGCCATATCAATTAACCTAATATTTCTTGTTCTCAACTATCTGCTTAATAACTATACTCACTCTTGTCATCGTCCTTCTCTTTATTGATACCTCTATATATGAGATTATCTGTTGAATGACATCAGATACCGAATTCATTACATTTTTTATGTGTGGTTATAATATTGGGTAAATATGTATGACTNTACATAGATTANGCTTTAAATACTCGTGCCAAAGGATAAATACGACTTTGTAACTATTAGGGTATGCCCTTTATTTTGATTAACTTTTTGTGTACTCGTGTATACAGATAATCCATATCTTTTTTCAAGTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E411117" ref_strand="-" ref_description="SGN-E411117 [STM-14-K11]">
      <seq>agagagatattgtccgactgtactatggtctggacaatgagtgccttccctgggaggatattagtagaaggataggtttgtccagagaaagagtgaggcaggttggattagttgcacttgagaaattaaaacatgctgccaggaaaaagcaattagatgcaatgttggttaaacattgagtatgatcgttgagaccaaactacaaatgaactgtacatagagtgtaagggaacctgcatctcttattttattttcttgatgaggagaacagatgaagatcaaagggacattcttcaccatccacccgtcccaagcctccaaattcgtccgagaagagtcagaaagatgtagtgaagatttttgtgcatcatatattttaggatgtatctgtgtttattgagatagtaggtaggtaaatgcaaatactgtatatatgttctttgtgttgacttatttcatacacttcatgtgataatgtccattttatatgatgtatcttgatgaaaaacacagttcctaaaatgttaatctgactttgtcccaaaaaaaaaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0113N10.1" temp_strand="-" temp_description="C06SLm0113N10.1  AC219227.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0113N10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="92395" stop="91083"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92095" g_stop="92026" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92025" i_stop="91861" i_length="165">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91860" g_stop="91384" g_length="477"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="544" r_length="474" r_score="0.922"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91383" i_stop="91281" i_length="103">
            <donor d_prob="0.000" d_score="0.88"/>
            <acceptor a_prob="0.722" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91280" g_stop="91271" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="545" r_stop="554" r_length="10" r_score="0.800"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0113N10.1" gen_strand="-" ref_id="SGN-E411117" ref_strand="-">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0113N10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E411117" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="92095" e_stop="92026"/>
          <exon e_start="91860" e_stop="91384"/>
          <exon e_start="91280" e_stop="91271"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGAGATATTATCCGACTGTACTATGGTCTGGACAATGAGTGCCTTACCTGGGAGGATATTAGTAGAAGGTAAGAATCCTAGTAAAATTGACTTTTAATGTAGTTAGCTAAAGATAAAGAAACTATACATGTTTAAATTCACAACAATTTGAACTAGGTTTGAAAAATTTATTGCAAGAAGTTCCTTATTTTGTTGAACCGCTGCTCTAAATTTATTTATTTTTTTCTTTACAGGATAGGTTTATCCAGAGAAAGAGTGAGGCAAGTTGGATTAGTTGCACTTGAGAAATTAAAACATGCTGCCAGAAAAAAGCAATTAGATGCAATGTTGGTTAAACATTGAGTATGATCGTTGAGACCAAACTACAAATGAACTGTACATAGAATGTAAGGAAACCTGCATCTCCTATTTTATTTTCTTGATGAGGAGAACAGATGAAGATCAAAGGGACATTCTTCACCATCTACTTCCCTGCTCCTGTCCCAAGCCTCCAAAAGAAGAGTCAGAAAGATGTGGTGAAGATTTTTGTGCATCATATATTTTAGGATGTATCTGTGTTTATTGAGATAGGAGGTAGGTAAATGCAAATACTGTATATATGTTCTCTGTGTTGACTTATTTCATACACTTGAATGTGATAATGTCCATTTTATATGATGTATCTTGATGAAAAACACAGTTTCCAGAATGTTAATCTGACTTTGTACACAATTTTAGTGGTAGTAGAAGAAAATATTTAAAATAATGTTGTCAAATTTATTTCCCGTAGTAAAGAATGTAGCACAACAAAGTTGAAATTTGAACTTTTTATAGATAAAAAAGC</genome_strand>
        <mrna_strand>AGAGAGATATTGTCCGACTGTACTATGGTCTGGACAATGAGTGCCTTCCCTGGGAGGATATTAGTAGAAG.....................................................................................................................................................................GATAGGTTTGTCCAGAGAAAGAGTGAGGCAGGTTGGATTAGTTGCACTTGAGAAATTAAAACATGCTGCCAGGAAAAAGCAATTAGATGCAATGTTGGTTAAACATTGAGTATGATCGTTGAGACCAAACTACAAATGAACTGTACATAGAGTGTAAGGGAACCTGCATCTCTTATTTTATTTTCTTGATGAGGAGAACAGATGAAGATCAAAGGGACATTCTTCACCATCCAC-CCGTCCCAAGCCTCCAAATTCGTC-CGAGAAGAGTCAGAAAGATGTAGTGAAGATTTTTGTGCATCATATATTTTAGGATGTATCTGTGTTTATTGAGATAGTAGGTAGGTAAATGCAAATACTGTATATATGTTCTTTGTGTTGACTTATTTCATACACTT-CATGTGATAATGTCCATTTTATATGATGTATCTTGATGAAAAACACAGTTCCTAAAATGTTAATCTGACTTTGTCCCAA.......................................................................................................AAAAAAAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E415142" ref_strand="-" ref_description="SGN-E415142 [STM-20-H8]">
      <seq>atggagttgatggatgggcgctcaaggatgaagtaaacaacctcatttcttcaactcttagggaacgcgagagagatattgtccgactgtactatggtctggacaatgagtgccttacctgggaggatattagtagaaggataggtttgtccagagaaagagtgaggcaggttggattagttgcacttgagaaattaaaacatgctgccaggaaaaagcaattagatgcaatgttggttaaacattgagtatgatcgttgagaccaaactacaaatgaactgtacatagaatgtaaggaaacctgcatctcctattttattttcttgatgaggagaacagatgaggatcaaagggacattcttcaccatccacctgtcccaagcctccaaattcgtccgagaagagtcagaaagatgtagtgaagatttttgtgcatcatatattttaggatgtatctgtgtttattgagatagtaggtaggtaaatgcaaatactgtatatatatatctgttctttgtgctgacttatttcatacacttcatgtgataatgtccattttatatgatgtatcttgatgaaaaacacagttcctaaaatgttaatctgactttgtacacaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0113N10.1" temp_strand="-" temp_description="C06SLm0113N10.1  AC219227.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0113N10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="93319" stop="91083"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93019" g_stop="92994" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="26" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92993" i_stop="92139" i_length="855">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.963" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92138" g_stop="92026" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="139" r_length="113" r_score="0.965"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="92025" i_stop="91861" i_length="165">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91860" g_stop="91383" g_length="478"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="620" r_length="481" r_score="0.908"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="91382" i_stop="91281" i_length="102">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.722" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="91280" g_stop="91273" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="621" r_stop="628" r_length="8" r_score="0.875"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0113N10.1" gen_strand="-" ref_id="SGN-E415142" ref_strand="-">
        <total_alignment_score>0.919</total_alignment_score>
        <cumulative_length_of_scored_exons>625</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0113N10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E415142" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="93019" e_stop="92994"/>
          <exon e_start="92138" e_stop="92026"/>
          <exon e_start="91860" e_stop="91383"/>
          <exon e_start="91280" e_stop="91273"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGAGTTGATGGATGGGCGCTCAAGGTAAGTTATTGAAGAGAAATCCTCACAATTTATTATGAACAGTATTTAATATGTGACTTGTGTTCATAAGTTGATGAATTTTAACAAAATCAAACTTTTGAGGTATCCTGATTTCTCCCTCCCTTGAATTACAGAGGAATTTAGTATTAACCCTGGTCCCTGGTAGATGCATGCTTGAAAGATCCCTAGTGGCAGTTACTACTATTCTAGCACTAGCTCCATCAATGAGTCTTTCCTCCTTGACTCAAAGTTAGGTTCGATCTTGATAAGTCAACTCATAATGATGTTAAGTTTCCCAATTATAATTTTGTGCAGGAAATATGATCTTGGTATACATTCTTTATACCTTTCTATCACTATATTTGATAGCTGTGCCTACCATAAAATCTTGTTCCCTTAAATTCCCTTCTTTTTGCGTTGCTGTGCTTTTTCTCTTCTATAACTAACCAAACTTGAGCCTCAATCTCAAACTAGTTGGGGTCAGCTTTATGATACGTCCGTAACCATATCACACCAGCAATCCAATATTTGAAAATTTAGGCTCTCTCGCACTAGAAGTTCTATAGATTCTATACTGTCATTCAAATCCCTAACAAGACTAGCAAACTAAGCCTGAATCACAATTGAATGTTAGTAATGATAACACCCCAAATTTGGGTCTGAGGATAAAATGGTACCTGTGAATGTGATATCAATGATGCTTCTCCCTACCTATGTTTCTCAGGAAGGGATGTTGTCTGGTGGTGCTTCCTTATAAGTTACATTTTGCTTTTCTTCTCATCTTATTTATCAAGACGTAAACTTGAAATATCTCAGAGACTGAAGAAATCATGACTGACTTCATCTGTTTTGCAGGATGAAGTAAACAATCTCATTTCTTCAATTCTCAGGGAACGCGAGAGAGATATTATCCGACTGTACTATGGTCTGGACAATGAGTGCCTTACCTGGGAGGATATTAGTAGAAGGTAAGAATCCTAGTAAAATTGACTTTTAATGTAGTTAGCTAAAGATAAAGAAACTATACATGTTTAAATTCACAACAATTTGAACTAGGTTTGAAAAATTTATTGCAAGAAGTTCCTTATTTTGTTGAACCGCTGCTCTAAATTTATTTATTTTTTTCTTTACAGGATAGGTTTATCCAGAGAAAGAGTGAGGCAAGTTGGATTAGTTGCACTTGAGAAATTAAAACATGCTGCCAGAAAAAAGCAATTAGATGCAATGTTGGTTAAACATTGAGTATGATCGTTGAGACCAAACTACAAATGAACTGTACATAGAATGTAAGGAAACCTGCATCTCCTATTTTATTTTCTTGATGAGGAGAACAGATGAAGATCAAAGGGACATTCTTCACCATCTACTTCCCTGCTCCTGTCCCAAGCCTCCAAAAGAAGAGTCAGAAAGATGTGGTGAAGATTTTTGTGCATCATATATTTTAGGATGTATCTGTGTTTATTGAGATAGGAGGTAGGTAAATGCAAATACTG----TATATA--TGTTCTCTGTGTTGACTTATTTCATACACTTGAATGTGATAATGTCCATTTTATATGATGTATCTTGATGAAAAACACAGTTTCCAGAATGTTAATCTGACTTTGTACACAATTTTAGTGGTAGTAGAAGAAAATATTTAAAATAATGTTGTCAAATTTATTTCCCGTAGTAAAGAATGTAGCACAACAAAGTTGAAATTTGAACTTTTTATAGATAAAAAA</genome_strand>
        <mrna_strand>ATGGAGTTGATGGATGGGCGCTCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAAGTAAACAACCTCATTTCTTCAACTCTTAGGGAACGCGAGAGAGATATTGTCCGACTGTACTATGGTCTGGACAATGAGTGCCTTACCTGGGAGGATATTAGTAGAAG.....................................................................................................................................................................GATAGGTTTGTCCAGAGAAAGAGTGAGGCAGGTTGGATTAGTTGCACTTGAGAAATTAAAACATGCTGCCAGGAAAAAGCAATTAGATGCAATGTTGGTTAAACATTGAGTATGATCGTTGAGACCAAACTACAAATGAACTGTACATAGAATGTAAGGAAACCTGCATCTCCTATTTTATTTTCTTGATGAGGAGAACAGATGAGGATCAAAGGGACATTCTTCACCATCCACCTGTC-CCAAGCCTCCAAATTCGTC-CGAGAAGAGTCAGAAAGATGTAGTGAAGATTTTTGTGCATCATATATTTTAGGATGTATCTGTGTTTATTGAGATAGTAGGTAGGTAAATGCAAATACTGTATATATATATCTGTTCTTTGTGCTGACTTATTTCATACACTT-CATGTGATAATGTCCATTTTATATGATGTATCTTGATGAAAAACACAGTTCCTAAAATGTTAATCTGACTTTGTACACAA......................................................................................................AAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E467791" ref_strand="-" ref_description="SGN-E467791 [cSTB-1-P9]">
      <seq>ttagttgcacttgagaaattaaaacatgctgccaggaaaaagcaattagatgcaatgttggttaaacattgagtatgatcgttgagaccaaactacaaatgaactgtacatagagtgtaagggaacctgcatctcttattttattttcttgatgaggagaacagatgaagatcaaagggacattcttcaccatccacccgtcccaagcctccaaattcgtccgagaagagtcagaaagatgtagtgaagatttttgtgcatcatatattttaggatgtatctgtgtttattgagatagtaggtaggtaaatgcaaatactgtatatatgttctttgtgttgacttatttcatacacttcatgtgataatgtccattttatatgatgtatcttgatgaaaaacacagttcctaaaatgttaatctgactttgtacccaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0113N10.1" temp_strand="-" temp_description="C06SLm0113N10.1  AC219227.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0113N10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="92123" stop="91083"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91823" g_stop="91384" g_length="440"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="437" r_length="437" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="438" polyA_stop="454"/>
      <MATCH_line gen_id="C06SLm0113N10.1" gen_strand="-" ref_id="SGN-E467791" ref_strand="-">
        <total_alignment_score>0.925</total_alignment_score>
        <cumulative_length_of_scored_exons>440</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0113N10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E467791" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="91823" e_stop="91384"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGTTGCACTTGAGAAATTAAAACATGCTGCCAGAAAAAAGCAATTAGATGCAATGTTGGTTAAACATTGAGTATGATCGTTGAGACCAAACTACAAATGAACTGTACATAGAATGTAAGGAAACCTGCATCTCCTATTTTATTTTCTTGATGAGGAGAACAGATGAAGATCAAAGGGACATTCTTCACCATCTACTTCCCTGCTCCTGTCCCAAGCCTCCAAAAGAAGAGTCAGAAAGATGTGGTGAAGATTTTTGTGCATCATATATTTTAGGATGTATCTGTGTTTATTGAGATAGGAGGTAGGTAAATGCAAATACTGTATATATGTTCTCTGTGTTGACTTATTTCATACACTTGAATGTGATAATGTCCATTTTATATGATGTATCTTGATGAAAAACACAGTTTCCAGAATGTTAATCTGACTTTGTACACA</genome_strand>
        <mrna_strand>TTAGTTGCACTTGAGAAATTAAAACATGCTGCCAGGAAAAAGCAATTAGATGCAATGTTGGTTAAACATTGAGTATGATCGTTGAGACCAAACTACAAATGAACTGTACATAGAGTGTAAGGGAACCTGCATCTCTTATTTTATTTTCTTGATGAGGAGAACAGATGAAGATCAAAGGGACATTCTTCACCATCCAC-CCGTCCCAAGCCTCCAAATTCGTC-CGAGAAGAGTCAGAAAGATGTAGTGAAGATTTTTGTGCATCATATATTTTAGGATGTATCTGTGTTTATTGAGATAGTAGGTAGGTAAATGCAAATACTGTATATATGTTCTTTGTGTTGACTTATTTCATACACTT-CATGTGATAATGTCCATTTTATATGATGTATCTTGATGAAAAACACAGTTCCTAAAATGTTAATCTGACTTTGTACCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E733632" ref_strand="+" ref_description="SGN-E733632 [LB10CB06]">
      <seq>cccagaagaaagtcagaaatgcaactgaggcaagcagcaaggtgttttcacttgatagggaagcatatccctctttaaatggccttcctggagcaacacttcatagctacattgctgacaatcgcctggagaacaacccatggcatggagttgatggatgggcgctcaaggatgaagtaaacaatctcatttcttcaactctcagggaacgcgagagagatattatccgactgtactatggtctggacaatgagtgccttacctgggaggatattagtagaaggataggtttatccagagaaagagtgaggcaagttggattagttgcacttgagaaattaaaacatgctgccagaaaaaagcaattagatgcaatgttggttaaacattgagtatgatcgttgagaccaaactacaaatgaactgtacatagaatgtaaggaaacctgcatctcctattttattttcttgatgaggagaacagatgaagatcaaagggacattcttcaccatctacttccctgctcctgtcccaagcctccaaaagaagagtcagaaagatgtggtgaagatttttgtgcatcatatattttaggatgtatctgtgtttattgagataggaggtaggtaaatgcaaatactgtatatatgttctctgtgttgacttatttcatacacttgaatgtgataatgtccattttatatgatgtatcttgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0113N10.1" temp_strand="-" temp_description="C06SLm0113N10.1  AC219227.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0113N10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="93737" stop="91125"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93437" g_stop="93409" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="29" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93408" i_stop="93334" i_length="75">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93333" g_stop="93256" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="107" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="93255" i_stop="93057" i_length="199">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93056" g_stop="92994" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="170" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="92993" i_stop="92139" i_length="855">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="92138" g_stop="92026" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="283" r_length="113" r_score="0.991"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="92025" i_stop="91861" i_length="165">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="91860" g_stop="91425" g_length="436"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="719" r_length="436" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0113N10.1" gen_strand="-" ref_id="SGN-E733632" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>719</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0113N10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E733632" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93437" e_stop="93409"/>
          <exon e_start="93333" e_stop="93256"/>
          <exon e_start="93056" e_stop="92994"/>
          <exon e_start="92138" e_stop="92026"/>
          <exon e_start="91860" e_stop="91425"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCAGAAGAAAGTCAGAAATGCAACTGAGGTATGATCATCTTATAGCTTTAACATTTCCAGTTCATTTAGTACAAAATTGCTTCTAAAATATTTGTTTTTCTAGGCAAGCAGCAAGGTGTTTTCACTTGATAGGGAAGCATATCCCTCTTTAAATGGCCTTCCTGGAGCAACACTTCATAGCGTAAGTCCAAACCATAATCTTTGCAAAAATATATTCTAGATTTGCATTTGACAGCATTCTGGATTTACCAAGTAATCCAAGACTGCCACTTCACAATATGTACATATTGACTATCAATCCAAGATCTTGAGGTCTTAGGCCCTTCTTTGTATCAACCATATTTCATCACTTATGTTTCATGGCCTACTTTCTTCTTCAGTACATTGCTGACAATCGCCTGGAGAACAACCCATGGCATGGAGTTGATGGATGGGCGCTCAAGGTAAGTTATTGAAGAGAAATCCTCACAATTTATTATGAACAGTATTTAATATGTGACTTGTGTTCATAAGTTGATGAATTTTAACAAAATCAAACTTTTGAGGTATCCTGATTTCTCCCTCCCTTGAATTACAGAGGAATTTAGTATTAACCCTGGTCCCTGGTAGATGCATGCTTGAAAGATCCCTAGTGGCAGTTACTACTATTCTAGCACTAGCTCCATCAATGAGTCTTTCCTCCTTGACTCAAAGTTAGGTTCGATCTTGATAAGTCAACTCATAATGATGTTAAGTTTCCCAATTATAATTTTGTGCAGGAAATATGATCTTGGTATACATTCTTTATACCTTTCTATCACTATATTTGATAGCTGTGCCTACCATAAAATCTTGTTCCCTTAAATTCCCTTCTTTTTGCGTTGCTGTGCTTTTTCTCTTCTATAACTAACCAAACTTGAGCCTCAATCTCAAACTAGTTGGGGTCAGCTTTATGATACGTCCGTAACCATATCACACCAGCAATCCAATATTTGAAAATTTAGGCTCTCTCGCACTAGAAGTTCTATAGATTCTATACTGTCATTCAAATCCCTAACAAGACTAGCAAACTAAGCCTGAATCACAATTGAATGTTAGTAATGATAACACCCCAAATTTGGGTCTGAGGATAAAATGGTACCTGTGAATGTGATATCAATGATGCTTCTCCCTACCTATGTTTCTCAGGAAGGGATGTTGTCTGGTGGTGCTTCCTTATAAGTTACATTTTGCTTTTCTTCTCATCTTATTTATCAAGACGTAAACTTGAAATATCTCAGAGACTGAAGAAATCATGACTGACTTCATCTGTTTTGCAGGATGAAGTAAACAATCTCATTTCTTCAATTCTCAGGGAACGCGAGAGAGATATTATCCGACTGTACTATGGTCTGGACAATGAGTGCCTTACCTGGGAGGATATTAGTAGAAGGTAAGAATCCTAGTAAAATTGACTTTTAATGTAGTTAGCTAAAGATAAAGAAACTATACATGTTTAAATTCACAACAATTTGAACTAGGTTTGAAAAATTTATTGCAAGAAGTTCCTTATTTTGTTGAACCGCTGCTCTAAATTTATTTATTTTTTTCTTTACAGGATAGGTTTATCCAGAGAAAGAGTGAGGCAAGTTGGATTAGTTGCACTTGAGAAATTAAAACATGCTGCCAGAAAAAAGCAATTAGATGCAATGTTGGTTAAACATTGAGTATGATCGTTGAGACCAAACTACAAATGAACTGTACATAGAATGTAAGGAAACCTGCATCTCCTATTTTATTTTCTTGATGAGGAGAACAGATGAAGATCAAAGGGACATTCTTCACCATCTACTTCCCTGCTCCTGTCCCAAGCCTCCAAAAGAAGAGTCAGAAAGATGTGGTGAAGATTTTTGTGCATCATATATTTTAGGATGTATCTGTGTTTATTGAGATAGGAGGTAGGTAAATGCAAATACTGTATATATGTTCTCTGTGTTGACTTATTTCATACACTTGAATGTGATAATGTCCATTTTATATGATGTATCTTGATG</genome_strand>
        <mrna_strand>CCCAGAAGAAAGTCAGAAATGCAACTGAG...........................................................................GCAAGCAGCAAGGTGTTTTCACTTGATAGGGAAGCATATCCCTCTTTAAATGGCCTTCCTGGAGCAACACTTCATAGC.......................................................................................................................................................................................................TACATTGCTGACAATCGCCTGGAGAACAACCCATGGCATGGAGTTGATGGATGGGCGCTCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAAGTAAACAATCTCATTTCTTCAACTCTCAGGGAACGCGAGAGAGATATTATCCGACTGTACTATGGTCTGGACAATGAGTGCCTTACCTGGGAGGATATTAGTAGAAG.....................................................................................................................................................................GATAGGTTTATCCAGAGAAAGAGTGAGGCAAGTTGGATTAGTTGCACTTGAGAAATTAAAACATGCTGCCAGAAAAAAGCAATTAGATGCAATGTTGGTTAAACATTGAGTATGATCGTTGAGACCAAACTACAAATGAACTGTACATAGAATGTAAGGAAACCTGCATCTCCTATTTTATTTTCTTGATGAGGAGAACAGATGAAGATCAAAGGGACATTCTTCACCATCTACTTCCCTGCTCCTGTCCCAAGCCTCCAAAAGAAGAGTCAGAAAGATGTGGTGAAGATTTTTGTGCATCATATATTTTAGGATGTATCTGTGTTTATTGAGATAGGAGGTAGGTAAATGCAAATACTGTATATATGTTCTCTGTGTTGACTTATTTCATACACTTGAATGTGATAATGTCCATTTTATATGATGTATCTTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E622311" ref_strand="+" ref_description="SGN-E622311 [72677]">
      <seq>gatattgtccgactgtactatggtctggacaatgagtgccttacctgggaggatattagtagaaggataggtttgtccagagaaagagtgaggcaggttggattagttgcacttgagaaattaaaacatgctgccaggaaaaagcaattagatgcaatgttggttaaacattgagtatgatcgttgagaccaaactacaaatgaactgtacatagaatgtaaggaaacctgcatctcctattttattttcttgatgaggagaacagatgaggatcaaagggacattcttcaccatccacctgtcccaagcctccaaattcgtccgagaagagtcagaaagatgtagtgaagatttttgtgcatcatatattttaggatgtatctgtgtttattgagatagtaggtaggtaaatgcaaatactgtatatatatatctgttctttgtgctgacttatttcatacacttcatgtgataatgtccattttatatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0113N10.1" temp_strand="-" temp_description="C06SLm0113N10.1  AC219227.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0113N10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="92390" stop="91136"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92090" g_stop="92026" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92025" i_stop="91861" i_length="165">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91860" g_stop="91436" g_length="425"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="493" r_length="428" r_score="0.904"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0113N10.1" gen_strand="-" ref_id="SGN-E622311" ref_strand="+">
        <total_alignment_score>0.914</total_alignment_score>
        <cumulative_length_of_scored_exons>490</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0113N10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E622311" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92090" e_stop="92026"/>
          <exon e_start="91860" e_stop="91436"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATATTATCCGACTGTACTATGGTCTGGACAATGAGTGCCTTACCTGGGAGGATATTAGTAGAAGGTAAGAATCCTAGTAAAATTGACTTTTAATGTAGTTAGCTAAAGATAAAGAAACTATACATGTTTAAATTCACAACAATTTGAACTAGGTTTGAAAAATTTATTGCAAGAAGTTCCTTATTTTGTTGAACCGCTGCTCTAAATTTATTTATTTTTTTCTTTACAGGATAGGTTTATCCAGAGAAAGAGTGAGGCAAGTTGGATTAGTTGCACTTGAGAAATTAAAACATGCTGCCAGAAAAAAGCAATTAGATGCAATGTTGGTTAAACATTGAGTATGATCGTTGAGACCAAACTACAAATGAACTGTACATAGAATGTAAGGAAACCTGCATCTCCTATTTTATTTTCTTGATGAGGAGAACAGATGAAGATCAAAGGGACATTCTTCACCATCTACTTCCCTGCTCCTGTCCCAAGCCTCCAAAAGAAGAGTCAGAAAGATGTGGTGAAGATTTTTGTGCATCATATATTTTAGGATGTATCTGTGTTTATTGAGATAGGAGGTAGGTAAATGCAAATACTG----TATATA--TGTTCTCTGTGTTGACTTATTTCATACACTTGAATGTGATAATGTCCATTTTATATGAT</genome_strand>
        <mrna_strand>GATATTGTCCGACTGTACTATGGTCTGGACAATGAGTGCCTTACCTGGGAGGATATTAGTAGAAG.....................................................................................................................................................................GATAGGTTTGTCCAGAGAAAGAGTGAGGCAGGTTGGATTAGTTGCACTTGAGAAATTAAAACATGCTGCCAGGAAAAAGCAATTAGATGCAATGTTGGTTAAACATTGAGTATGATCGTTGAGACCAAACTACAAATGAACTGTACATAGAATGTAAGGAAACCTGCATCTCCTATTTTATTTTCTTGATGAGGAGAACAGATGAGGATCAAAGGGACATTCTTCACCATCCACCTGTC-CCAAGCCTCCAAATTCGTC-CGAGAAGAGTCAGAAAGATGTAGTGAAGATTTTTGTGCATCATATATTTTAGGATGTATCTGTGTTTATTGAGATAGTAGGTAGGTAAATGCAAATACTGTATATATATATCTGTTCTTTGTGCTGACTTATTTCATACACTT-CATGTGATAATGTCCATTTTATATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E610948" ref_strand="+" ref_description="SGN-E610948 [60692]">
      <seq>attagttgataactcaagaaccttaagattgcccatacatctacatgaaagactgagtttgatccgtaatgcaaaagtcaagcttaaagataatggaataactccatcaatcgaaaaaatagctgaatgccttaacatgtcccagaagaaagtcaggaatgcaactgaggcaagcaacaaggtgttttcacttgatagggaagcatatccctctttaaatggccttcctggagcaacacttcatagctacattgccgataatcgcctagagaacaacccgtggcatggagttgatggatgggcgctcaaggatgaagtaaacaacctcatttcttcaactcttagggaacgcgagagagatattgtccgactgtactatggtctggacaatgagtgccttacctgggaggatattagtagaaggataggtttgtccagagaaagagtgaggcaggttggattagttgcacttgagaaattaaaacatgctgccaggaaaaagcaattagatgcaatgtaggttaaacattgagtatgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0113N10.1" temp_strand="-" temp_description="C06SLm0113N10.1  AC219227.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0113N10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="93997" stop="91444"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93697" g_stop="93583" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="115" r_length="115" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93582" i_stop="93463" i_length="120">
            <donor d_prob="0.988" d_score="0.98"/>
            <acceptor a_prob="0.982" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93462" g_stop="93409" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="169" r_length="54" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="93408" i_stop="93334" i_length="75">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.970" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93333" g_stop="93256" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="247" r_length="78" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="93255" i_stop="93057" i_length="199">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="93056" g_stop="92994" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="310" r_length="63" r_score="0.937"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="92993" i_stop="92139" i_length="855">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.963" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="92138" g_stop="92026" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="423" r_length="113" r_score="0.965"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="92025" i_stop="91861" i_length="165">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="91860" g_stop="91744" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="540" r_length="117" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0113N10.1" gen_strand="-" ref_id="SGN-E610948" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>540</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0113N10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E610948" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93697" e_stop="93583"/>
          <exon e_start="93462" e_stop="93409"/>
          <exon e_start="93333" e_stop="93256"/>
          <exon e_start="93056" e_stop="92994"/>
          <exon e_start="92138" e_stop="92026"/>
          <exon e_start="91860" e_stop="91744"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTAGTTGATAACTCAAGAACATTGAGATTGCCCATACATCTACATGAAAGACTGAGTTTGATCCGTAATGCAAAAGTCAAGCTTAAAGATAGTGGAATAACTCCATCAATCGAAGTAAGTTCTGTCAAAATGAATTGATCGATATCATACTCGGAATGTTTCTAATAAATTTAATTGTGAAGTATTACACTGTTCTTTTTGCTAATTTGCTTTTGCTTTTTCCTGATCCATCAGAAAATAGCTGAATGCCTTAACATGTCCCAGAAGAAAGTCAGAAATGCAACTGAGGTATGATCATCTTATAGCTTTAACATTTCCAGTTCATTTAGTACAAAATTGCTTCTAAAATATTTGTTTTTCTAGGCAAGCAGCAAGGTGTTTTCACTTGATAGGGAAGCATATCCCTCTTTAAATGGCCTTCCTGGAGCAACACTTCATAGCGTAAGTCCAAACCATAATCTTTGCAAAAATATATTCTAGATTTGCATTTGACAGCATTCTGGATTTACCAAGTAATCCAAGACTGCCACTTCACAATATGTACATATTGACTATCAATCCAAGATCTTGAGGTCTTAGGCCCTTCTTTGTATCAACCATATTTCATCACTTATGTTTCATGGCCTACTTTCTTCTTCAGTACATTGCTGACAATCGCCTGGAGAACAACCCATGGCATGGAGTTGATGGATGGGCGCTCAAGGTAAGTTATTGAAGAGAAATCCTCACAATTTATTATGAACAGTATTTAATATGTGACTTGTGTTCATAAGTTGATGAATTTTAACAAAATCAAACTTTTGAGGTATCCTGATTTCTCCCTCCCTTGAATTACAGAGGAATTTAGTATTAACCCTGGTCCCTGGTAGATGCATGCTTGAAAGATCCCTAGTGGCAGTTACTACTATTCTAGCACTAGCTCCATCAATGAGTCTTTCCTCCTTGACTCAAAGTTAGGTTCGATCTTGATAAGTCAACTCATAATGATGTTAAGTTTCCCAATTATAATTTTGTGCAGGAAATATGATCTTGGTATACATTCTTTATACCTTTCTATCACTATATTTGATAGCTGTGCCTACCATAAAATCTTGTTCCCTTAAATTCCCTTCTTTTTGCGTTGCTGTGCTTTTTCTCTTCTATAACTAACCAAACTTGAGCCTCAATCTCAAACTAGTTGGGGTCAGCTTTATGATACGTCCGTAACCATATCACACCAGCAATCCAATATTTGAAAATTTAGGCTCTCTCGCACTAGAAGTTCTATAGATTCTATACTGTCATTCAAATCCCTAACAAGACTAGCAAACTAAGCCTGAATCACAATTGAATGTTAGTAATGATAACACCCCAAATTTGGGTCTGAGGATAAAATGGTACCTGTGAATGTGATATCAATGATGCTTCTCCCTACCTATGTTTCTCAGGAAGGGATGTTGTCTGGTGGTGCTTCCTTATAAGTTACATTTTGCTTTTCTTCTCATCTTATTTATCAAGACGTAAACTTGAAATATCTCAGAGACTGAAGAAATCATGACTGACTTCATCTGTTTTGCAGGATGAAGTAAACAATCTCATTTCTTCAATTCTCAGGGAACGCGAGAGAGATATTATCCGACTGTACTATGGTCTGGACAATGAGTGCCTTACCTGGGAGGATATTAGTAGAAGGTAAGAATCCTAGTAAAATTGACTTTTAATGTAGTTAGCTAAAGATAAAGAAACTATACATGTTTAAATTCACAACAATTTGAACTAGGTTTGAAAAATTTATTGCAAGAAGTTCCTTATTTTGTTGAACCGCTGCTCTAAATTTATTTATTTTTTTCTTTACAGGATAGGTTTATCCAGAGAAAGAGTGAGGCAAGTTGGATTAGTTGCACTTGAGAAATTAAAACATGCTGCCAGAAAAAAGCAATTAGATGCAATGTTGGTTAAACATTGAGTATGATC</genome_strand>
        <mrna_strand>ATTAGTTGATAACTCAAGAACCTTAAGATTGCCCATACATCTACATGAAAGACTGAGTTTGATCCGTAATGCAAAAGTCAAGCTTAAAGATAATGGAATAACTCCATCAATCGAA........................................................................................................................AAAATAGCTGAATGCCTTAACATGTCCCAGAAGAAAGTCAGGAATGCAACTGAG...........................................................................GCAAGCAACAAGGTGTTTTCACTTGATAGGGAAGCATATCCCTCTTTAAATGGCCTTCCTGGAGCAACACTTCATAGC.......................................................................................................................................................................................................TACATTGCCGATAATCGCCTAGAGAACAACCCGTGGCATGGAGTTGATGGATGGGCGCTCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAAGTAAACAACCTCATTTCTTCAACTCTTAGGGAACGCGAGAGAGATATTGTCCGACTGTACTATGGTCTGGACAATGAGTGCCTTACCTGGGAGGATATTAGTAGAAG.....................................................................................................................................................................GATAGGTTTGTCCAGAGAAAGAGTGAGGCAGGTTGGATTAGTTGCACTTGAGAAATTAAAACATGCTGCCAGGAAAAAGCAATTAGATGCAATGTAGGTTAAACATTGAGTATGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E279833" ref_strand="+" ref_description="SGN-E279833 [cLER-8-H1]">
      <seq>gaataactccatcaatcgaaaaaatagctgaatgccttaacatgtcccagaagaaagtcagaaatgcaactgaggcaagcagcaaggtgttttcacttgatagggaagcatatccctctttaaatggccttcctggagcaacacttcatagctacattgctgacaatcgcctggagaacaacccatggcatggagttgatggatgggcgctcaaggatgaagtaaacaatctcatttcttcaattctcagggaacgcgagagagatattatccgactgtactatggtctggacaatgagtgccttacctgggaggatattagtagaaggataggtttatccagagaaagagtgaggcaagttggattagttgcacttgagaaattaaaacatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0113N10.1" temp_strand="-" temp_description="C06SLm0113N10.1  AC219227.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0113N10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="93902" stop="91495"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93602" g_stop="93583" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93582" i_stop="93463" i_length="120">
            <donor d_prob="0.988" d_score="0.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93462" g_stop="93409" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="74" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="93408" i_stop="93334" i_length="75">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93333" g_stop="93256" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="152" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="93255" i_stop="93057" i_length="199">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="93056" g_stop="92994" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="215" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="92993" i_stop="92139" i_length="855">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="92138" g_stop="92026" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="328" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="92025" i_stop="91861" i_length="165">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="91860" g_stop="91795" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="394" r_length="66" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0113N10.1" gen_strand="-" ref_id="SGN-E279833" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>394</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0113N10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E279833" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93602" e_stop="93583"/>
          <exon e_start="93462" e_stop="93409"/>
          <exon e_start="93333" e_stop="93256"/>
          <exon e_start="93056" e_stop="92994"/>
          <exon e_start="92138" e_stop="92026"/>
          <exon e_start="91860" e_stop="91795"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATAACTCCATCAATCGAAGTAAGTTCTGTCAAAATGAATTGATCGATATCATACTCGGAATGTTTCTAATAAATTTAATTGTGAAGTATTACACTGTTCTTTTTGCTAATTTGCTTTTGCTTTTTCCTGATCCATCAGAAAATAGCTGAATGCCTTAACATGTCCCAGAAGAAAGTCAGAAATGCAACTGAGGTATGATCATCTTATAGCTTTAACATTTCCAGTTCATTTAGTACAAAATTGCTTCTAAAATATTTGTTTTTCTAGGCAAGCAGCAAGGTGTTTTCACTTGATAGGGAAGCATATCCCTCTTTAAATGGCCTTCCTGGAGCAACACTTCATAGCGTAAGTCCAAACCATAATCTTTGCAAAAATATATTCTAGATTTGCATTTGACAGCATTCTGGATTTACCAAGTAATCCAAGACTGCCACTTCACAATATGTACATATTGACTATCAATCCAAGATCTTGAGGTCTTAGGCCCTTCTTTGTATCAACCATATTTCATCACTTATGTTTCATGGCCTACTTTCTTCTTCAGTACATTGCTGACAATCGCCTGGAGAACAACCCATGGCATGGAGTTGATGGATGGGCGCTCAAGGTAAGTTATTGAAGAGAAATCCTCACAATTTATTATGAACAGTATTTAATATGTGACTTGTGTTCATAAGTTGATGAATTTTAACAAAATCAAACTTTTGAGGTATCCTGATTTCTCCCTCCCTTGAATTACAGAGGAATTTAGTATTAACCCTGGTCCCTGGTAGATGCATGCTTGAAAGATCCCTAGTGGCAGTTACTACTATTCTAGCACTAGCTCCATCAATGAGTCTTTCCTCCTTGACTCAAAGTTAGGTTCGATCTTGATAAGTCAACTCATAATGATGTTAAGTTTCCCAATTATAATTTTGTGCAGGAAATATGATCTTGGTATACATTCTTTATACCTTTCTATCACTATATTTGATAGCTGTGCCTACCATAAAATCTTGTTCCCTTAAATTCCCTTCTTTTTGCGTTGCTGTGCTTTTTCTCTTCTATAACTAACCAAACTTGAGCCTCAATCTCAAACTAGTTGGGGTCAGCTTTATGATACGTCCGTAACCATATCACACCAGCAATCCAATATTTGAAAATTTAGGCTCTCTCGCACTAGAAGTTCTATAGATTCTATACTGTCATTCAAATCCCTAACAAGACTAGCAAACTAAGCCTGAATCACAATTGAATGTTAGTAATGATAACACCCCAAATTTGGGTCTGAGGATAAAATGGTACCTGTGAATGTGATATCAATGATGCTTCTCCCTACCTATGTTTCTCAGGAAGGGATGTTGTCTGGTGGTGCTTCCTTATAAGTTACATTTTGCTTTTCTTCTCATCTTATTTATCAAGACGTAAACTTGAAATATCTCAGAGACTGAAGAAATCATGACTGACTTCATCTGTTTTGCAGGATGAAGTAAACAATCTCATTTCTTCAATTCTCAGGGAACGCGAGAGAGATATTATCCGACTGTACTATGGTCTGGACAATGAGTGCCTTACCTGGGAGGATATTAGTAGAAGGTAAGAATCCTAGTAAAATTGACTTTTAATGTAGTTAGCTAAAGATAAAGAAACTATACATGTTTAAATTCACAACAATTTGAACTAGGTTTGAAAAATTTATTGCAAGAAGTTCCTTATTTTGTTGAACCGCTGCTCTAAATTTATTTATTTTTTTCTTTACAGGATAGGTTTATCCAGAGAAAGAGTGAGGCAAGTTGGATTAGTTGCACTTGAGAAATTAAAACATGC</genome_strand>
        <mrna_strand>GAATAACTCCATCAATCGAA........................................................................................................................AAAATAGCTGAATGCCTTAACATGTCCCAGAAGAAAGTCAGAAATGCAACTGAG...........................................................................GCAAGCAGCAAGGTGTTTTCACTTGATAGGGAAGCATATCCCTCTTTAAATGGCCTTCCTGGAGCAACACTTCATAGC.......................................................................................................................................................................................................TACATTGCTGACAATCGCCTGGAGAACAACCCATGGCATGGAGTTGATGGATGGGCGCTCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAAGTAAACAATCTCATTTCTTCAATTCTCAGGGAACGCGAGAGAGATATTATCCGACTGTACTATGGTCTGGACAATGAGTGCCTTACCTGGGAGGATATTAGTAGAAG.....................................................................................................................................................................GATAGGTTTATCCAGAGAAAGAGTGAGGCAAGTTGGATTAGTTGCACTTGAGAAATTAAAACATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E479234" ref_strand="+" ref_description="SGN-E479234 [cSTD-9-O9]">
      <seq>tcaaaatctcaacttatgtttattggtggattcgtcagggcgtctcccgagccattagttgataacctcaagaacccttaagattgcccatacatctacatgaaagacctgagtttgatccgtaatgcaaaagtcaagcttaaagataatggaataacctccatcaatcgaaaaaatagctgaatgccttaacatgtcccagaaaaaagtcaggaatgcaactgaggcaagcaacaaggtgttttcacttgatagggaagcatatccctctttaaatggccttcctggagcaacacttcatagctacattgccgataatcgcctagagaacaacccgtggcatggagttgatggatgggcgctcaaggatgaagtaacaacctcatttcttcaactcttagggaacgcgagagagatattgtccgactgtactatggtctggacaatgagtgcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0113N10.1" temp_strand="-" temp_description="C06SLm0113N10.1  AC219227.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0113N10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="94158" stop="91750"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93858" g_stop="93821" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93820" i_stop="93712" i_length="109">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.888" a_score="0.81"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93711" g_stop="93583" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="172" r_length="134" r_score="0.891"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="93582" i_stop="93463" i_length="120">
            <donor d_prob="0.988" d_score="0.94"/>
            <acceptor a_prob="0.982" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93462" g_stop="93409" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="226" r_length="54" r_score="0.963"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="93408" i_stop="93334" i_length="75">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.970" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="93333" g_stop="93256" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="304" r_length="78" r_score="0.987"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="93255" i_stop="93057" i_length="199">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="93056" g_stop="92994" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="367" r_length="63" r_score="0.937"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="92993" i_stop="92139" i_length="855">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.963" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="92138" g_stop="92050" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="455" r_length="88" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0113N10.1" gen_strand="-" ref_id="SGN-E479234" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>451</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0113N10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E479234" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93858" e_stop="93821"/>
          <exon e_start="93711" e_stop="93583"/>
          <exon e_start="93462" e_stop="93409"/>
          <exon e_start="93333" e_stop="93256"/>
          <exon e_start="93056" e_stop="92994"/>
          <exon e_start="92138" e_stop="92050"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAAATCTCAACTTATGTTTATTGGTGGATTCGTCAGGTGAGATTACTATTTAGTTTTGTTTTTCCGTTTCTTGAAGACAACACTAGTTTGTGTTGTAAAATGACGAGGACCTTCATTACCTATTGGCTATTTCCCCATTTCTCAGGGCGTTTCCCGAG-CATTAGTTGATAA-CTCAAGAA-CATTGAGATTGCCCATACATCTACATGAAAGA-CTGAGTTTGATCCGTAATGCAAAAGTCAAGCTTAAAGATAGTGGAATAA-CTCCATCAATCGAAGTAAGTTCTGTCAAAATGAATTGATCGATATCATACTCGGAATGTTTCTAATAAATTTAATTGTGAAGTATTACACTGTTCTTTTTGCTAATTTGCTTTTGCTTTTTCCTGATCCATCAGAAAATAGCTGAATGCCTTAACATGTCCCAGAAGAAAGTCAGAAATGCAACTGAGGTATGATCATCTTATAGCTTTAACATTTCCAGTTCATTTAGTACAAAATTGCTTCTAAAATATTTGTTTTTCTAGGCAAGCAGCAAGGTGTTTTCACTTGATAGGGAAGCATATCCCTCTTTAAATGGCCTTCCTGGAGCAACACTTCATAGCGTAAGTCCAAACCATAATCTTTGCAAAAATATATTCTAGATTTGCATTTGACAGCATTCTGGATTTACCAAGTAATCCAAGACTGCCACTTCACAATATGTACATATTGACTATCAATCCAAGATCTTGAGGTCTTAGGCCCTTCTTTGTATCAACCATATTTCATCACTTATGTTTCATGGCCTACTTTCTTCTTCAGTACATTGCTGACAATCGCCTGGAGAACAACCCATGGCATGGAGTTGATGGATGGGCGCTCAAGGTAAGTTATTGAAGAGAAATCCTCACAATTTATTATGAACAGTATTTAATATGTGACTTGTGTTCATAAGTTGATGAATTTTAACAAAATCAAACTTTTGAGGTATCCTGATTTCTCCCTCCCTTGAATTACAGAGGAATTTAGTATTAACCCTGGTCCCTGGTAGATGCATGCTTGAAAGATCCCTAGTGGCAGTTACTACTATTCTAGCACTAGCTCCATCAATGAGTCTTTCCTCCTTGACTCAAAGTTAGGTTCGATCTTGATAAGTCAACTCATAATGATGTTAAGTTTCCCAATTATAATTTTGTGCAGGAAATATGATCTTGGTATACATTCTTTATACCTTTCTATCACTATATTTGATAGCTGTGCCTACCATAAAATCTTGTTCCCTTAAATTCCCTTCTTTTTGCGTTGCTGTGCTTTTTCTCTTCTATAACTAACCAAACTTGAGCCTCAATCTCAAACTAGTTGGGGTCAGCTTTATGATACGTCCGTAACCATATCACACCAGCAATCCAATATTTGAAAATTTAGGCTCTCTCGCACTAGAAGTTCTATAGATTCTATACTGTCATTCAAATCCCTAACAAGACTAGCAAACTAAGCCTGAATCACAATTGAATGTTAGTAATGATAACACCCCAAATTTGGGTCTGAGGATAAAATGGTACCTGTGAATGTGATATCAATGATGCTTCTCCCTACCTATGTTTCTCAGGAAGGGATGTTGTCTGGTGGTGCTTCCTTATAAGTTACATTTTGCTTTTCTTCTCATCTTATTTATCAAGACGTAAACTTGAAATATCTCAGAGACTGAAGAAATCATGACTGACTTCATCTGTTTTGCAGGATGAAGTAAACAATCTCATTTCTTCAATTCTCAGGGAACGCGAGAGAGATATTATCCGACTGTACTATGGTCTGGACAATGAGTGCCT</genome_strand>
        <mrna_strand>TCAAAATCTCAACTTATGTTTATTGGTGGATTCGTCAG.............................................................................................................GGCGTCTCCCGAGCCATTAGTTGATAACCTCAAGAACCCTTAAGATTGCCCATACATCTACATGAAAGACCTGAGTTTGATCCGTAATGCAAAAGTCAAGCTTAAAGATAATGGAATAACCTCCATCAATCGAA........................................................................................................................AAAATAGCTGAATGCCTTAACATGTCCCAGAAAAAAGTCAGGAATGCAACTGAG...........................................................................GCAAGCAACAAGGTGTTTTCACTTGATAGGGAAGCATATCCCTCTTTAAATGGCCTTCCTGGAGCAACACTTCATAGC.......................................................................................................................................................................................................TACATTGCCGATAATCGCCTAGAGAACAACCCGTGGCATGGAGTTGATGGATGGGCGCTCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAAGT-AACAACCTCATTTCTTCAACTCTTAGGGAACGCGAGAGAGATATTGTCCGACTGTACTATGGTCTGGACAATGAGTGCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E371475" ref_strand="+" ref_description="SGN-E371475 [TUS-29-P18]">
      <seq>tgagatctgttgtcggtccagagctacaacaaaaccgtttgagaggttacatgaatggtgtcgtaaaccaagaacttcttacacataaggaagtggtgcaactatccaagaaaatcaaatttggtctttatttagaagaacagaaggccagtctgaaggaaagattgggatgtgaaccttctgacgatcaactcgcggtttccttgaagatgtctcttgctgatttacgatctacattaatggagtgttccttggctagagaaaaacttgcaatgagcaatgttcgtcttgtcatgtcaattgcgcaaagatacgatagcatgggtactgaaatggctgacctcattcaggggggacttattggactacttcgcgggatagagaaatttgatcactcaagaggattcaaaatctcaacttatgtttattggtggattcgtcagggcgtttcccgagcattagttgataactcaagaacattgagattgcccatacatctacatgaaagactgagtttgatccgtaatgcaaaagtcaagcttaaagatagtggaataactccatcaatcgaaaaaatagctgaatgccttaacatgtcccagaagagagtcagaaatgcaactgatgcaagcagcaaggtgttttcacttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0113N10.1" temp_strand="-" temp_description="C06SLm0113N10.1  AC219227.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0113N10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="95392" stop="93007"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95092" g_stop="94942" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94941" i_stop="94233" i_length="709">
            <donor d_prob="0.877" d_score="1.00"/>
            <acceptor a_prob="0.628" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94232" g_stop="94034" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="350" r_length="199" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94033" i_stop="93914" i_length="120">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.871" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93913" g_stop="93821" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="443" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="93820" i_stop="93712" i_length="109">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.888" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="93711" g_stop="93583" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="444" r_stop="572" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="93582" i_stop="93463" i_length="120">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="93462" g_stop="93409" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="573" r_stop="626" r_length="54" r_score="0.963"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="93408" i_stop="93334" i_length="75">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.970" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="93333" g_stop="93307" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="627" r_stop="653" r_length="27" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0113N10.1" gen_strand="-" ref_id="SGN-E371475" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>653</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0113N10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E371475" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95092" e_stop="94942"/>
          <exon e_start="94232" e_stop="94034"/>
          <exon e_start="93913" e_stop="93821"/>
          <exon e_start="93711" e_stop="93583"/>
          <exon e_start="93462" e_stop="93409"/>
          <exon e_start="93333" e_stop="93307"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGATCTGTTGTCGGTCCAGAGCTACAACAAAACCGTTTGAGAGGTTACATGAATGGTGTCGTAAACCAAGAACTTCTTACACATAAGGAAGTGGTGCAACTATCCAAGAAAATCAAATTTGGTCTTTATTTAGAAGAACAGAAGGCCAGGTACTAAACTCACAACTTCCTCCAACCGTGCCACCCTACTTTCTCAAACATCAGAACAGACTTTAGTAGCTGATCGTCTCTTCGGTGAAAATTACTATAAAGAACTTAAGAAATATTGTAGAAAGAGTGAGATAAACTGCATGAATTATATTTTTTACCCATGAGAAGCAGAGTCATGAGGTTAATCTTTCTCAAATACCCCATCCAAACGTTCTGTTCCGATATTGTCCAACTGCTTTTGATGTTTTCCTAAATACATTGCTTTCATAATATTGGAGGTCATGTTGCTGCCAATGTTTTAGTAGTGCTTGAAACTCATTATAAGAAAGAGTTAATAGCCTTTATGATTGCTGTGAGACTGAACCAGATTTAAGCCAGTCTTAATGTTGCTAATGGTAGCTAGCTTCCTTATCTAATAATAAATGAGGTATAATAAACAGGATGGAGACAGAATGCAGGAGAAGTGTTCAGATAATCTAGAGAGTTACTACTTCTTAGCATGTTTCTCTTTATAATTGTCAAAATGTAGTTGTGCCTTCTTGAAGGTTATGATTTCTATGTTAATGACAGCTTGACTTCTTTACGCTATCACATTGAAGGGATTTTTTTTTAAGTTGAATTGATAGTGATATTTTGGACTAGGTATTTTCTTTCAAAATGTGTTTTAGAGATTGTTTACTCAGCTTGATTAATCCATGGAAAATTTTAGTCTGAAGGAAAGATTGGGATGTGAACCTTCTGACGATCAACTCGCGGTTTCCTTGAAGATGTCTCTTGCTGATTTACGATCTACATTAATGGAGTGTTCCTTGGCTAGAGAAAAACTTGCAATGAGCAATGTTCGTCTTGTCATGTCAATTGCGCAAAGATACGATAGCATGGGTACTGAAATGGCTGACCTCATTCAGGTAACTTTTACTGTGCAAACAAAGCTACAGATGCAGAACTTCTTGCATTTGTGCATTGGTTATTATACTGTAAGCTCAAACGTGGCAATTCTTGAGGAAAGTTCCCTCATATGCATGTAGGGGGGACTTATTGGACTACTTCGCGGGATAGAGAAATTTGATCACTCAAGAGGATTCAAAATCTCAACTTATGTTTATTGGTGGATTCGTCAGGTGAGATTACTATTTAGTTTTGTTTTTCCGTTTCTTGAAGACAACACTAGTTTGTGTTGTAAAATGACGAGGACCTTCATTACCTATTGGCTATTTCCCCATTTCTCAGGGCGTTTCCCGAGCATTAGTTGATAACTCAAGAACATTGAGATTGCCCATACATCTACATGAAAGACTGAGTTTGATCCGTAATGCAAAAGTCAAGCTTAAAGATAGTGGAATAACTCCATCAATCGAAGTAAGTTCTGTCAAAATGAATTGATCGATATCATACTCGGAATGTTTCTAATAAATTTAATTGTGAAGTATTACACTGTTCTTTTTGCTAATTTGCTTTTGCTTTTTCCTGATCCATCAGAAAATAGCTGAATGCCTTAACATGTCCCAGAAGAAAGTCAGAAATGCAACTGAGGTATGATCATCTTATAGCTTTAACATTTCCAGTTCATTTAGTACAAAATTGCTTCTAAAATATTTGTTTTTCTAGGCAAGCAGCAAGGTGTTTTCACTTGAT</genome_strand>
        <mrna_strand>TGAGATCTGTTGTCGGTCCAGAGCTACAACAAAACCGTTTGAGAGGTTACATGAATGGTGTCGTAAACCAAGAACTTCTTACACATAAGGAAGTGGTGCAACTATCCAAGAAAATCAAATTTGGTCTTTATTTAGAAGAACAGAAGGCCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGAAGGAAAGATTGGGATGTGAACCTTCTGACGATCAACTCGCGGTTTCCTTGAAGATGTCTCTTGCTGATTTACGATCTACATTAATGGAGTGTTCCTTGGCTAGAGAAAAACTTGCAATGAGCAATGTTCGTCTTGTCATGTCAATTGCGCAAAGATACGATAGCATGGGTACTGAAATGGCTGACCTCATTCAG........................................................................................................................GGGGGACTTATTGGACTACTTCGCGGGATAGAGAAATTTGATCACTCAAGAGGATTCAAAATCTCAACTTATGTTTATTGGTGGATTCGTCAG.............................................................................................................GGCGTTTCCCGAGCATTAGTTGATAACTCAAGAACATTGAGATTGCCCATACATCTACATGAAAGACTGAGTTTGATCCGTAATGCAAAAGTCAAGCTTAAAGATAGTGGAATAACTCCATCAATCGAA........................................................................................................................AAAATAGCTGAATGCCTTAACATGTCCCAGAAGAGAGTCAGAAATGCAACTGAT...........................................................................GCAAGCAGCAAGGTGTTTTCACTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E444329" ref_strand="+" ref_description="SGN-E444329 [cSTA-42-F5]">
      <seq>ctgatttacgatctacattaatggagtgttccttggctagagaaaaacttgcaatgagcaatgttcgtctcgtcatgtcaattgcacaaagatatgatagcatgggtactgaaatggctgacctcattcaggggggccttattggactacttcgtgggatagagaaatttgatcactcaagaggattcaaaatctcaacttatgtttattggtggattcgtcagggcgtctcccgagcattagttgataactcaagaaccttaagattgcccatacatctacatgaaagactgagtttgatccgtaatgcaaaagtcaagcttaaagataatggaataactccatcaatcgaaaaaatagctgaatgccttaacatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0113N10.1" temp_strand="-" temp_description="C06SLm0113N10.1  AC219227.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0113N10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="94464" stop="93139"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94164" g_stop="94034" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="131" r_length="131" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94033" i_stop="93914" i_length="120">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="0.871" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93913" g_stop="93821" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="224" r_length="93" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="93820" i_stop="93712" i_length="109">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.888" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93711" g_stop="93583" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="353" r_length="129" r_score="0.969"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="93582" i_stop="93463" i_length="120">
            <donor d_prob="0.988" d_score="0.98"/>
            <acceptor a_prob="0.982" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="93462" g_stop="93439" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="377" r_length="24" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0113N10.1" gen_strand="-" ref_id="SGN-E444329" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>377</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0113N10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E444329" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94164" e_stop="94034"/>
          <exon e_start="93913" e_stop="93821"/>
          <exon e_start="93711" e_stop="93583"/>
          <exon e_start="93462" e_stop="93439"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGATTTACGATCTACATTAATGGAGTGTTCCTTGGCTAGAGAAAAACTTGCAATGAGCAATGTTCGTCTTGTCATGTCAATTGCGCAAAGATACGATAGCATGGGTACTGAAATGGCTGACCTCATTCAGGTAACTTTTACTGTGCAAACAAAGCTACAGATGCAGAACTTCTTGCATTTGTGCATTGGTTATTATACTGTAAGCTCAAACGTGGCAATTCTTGAGGAAAGTTCCCTCATATGCATGTAGGGGGGACTTATTGGACTACTTCGCGGGATAGAGAAATTTGATCACTCAAGAGGATTCAAAATCTCAACTTATGTTTATTGGTGGATTCGTCAGGTGAGATTACTATTTAGTTTTGTTTTTCCGTTTCTTGAAGACAACACTAGTTTGTGTTGTAAAATGACGAGGACCTTCATTACCTATTGGCTATTTCCCCATTTCTCAGGGCGTTTCCCGAGCATTAGTTGATAACTCAAGAACATTGAGATTGCCCATACATCTACATGAAAGACTGAGTTTGATCCGTAATGCAAAAGTCAAGCTTAAAGATAGTGGAATAACTCCATCAATCGAAGTAAGTTCTGTCAAAATGAATTGATCGATATCATACTCGGAATGTTTCTAATAAATTTAATTGTGAAGTATTACACTGTTCTTTTTGCTAATTTGCTTTTGCTTTTTCCTGATCCATCAGAAAATAGCTGAATGCCTTAACATG</genome_strand>
        <mrna_strand>CTGATTTACGATCTACATTAATGGAGTGTTCCTTGGCTAGAGAAAAACTTGCAATGAGCAATGTTCGTCTCGTCATGTCAATTGCACAAAGATATGATAGCATGGGTACTGAAATGGCTGACCTCATTCAG........................................................................................................................GGGGGCCTTATTGGACTACTTCGTGGGATAGAGAAATTTGATCACTCAAGAGGATTCAAAATCTCAACTTATGTTTATTGGTGGATTCGTCAG.............................................................................................................GGCGTCTCCCGAGCATTAGTTGATAACTCAAGAACCTTAAGATTGCCCATACATCTACATGAAAGACTGAGTTTGATCCGTAATGCAAAAGTCAAGCTTAAAGATAATGGAATAACTCCATCAATCGAA........................................................................................................................AAAATAGCTGAATGCCTTAACATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E321075" ref_strand="+" ref_description="SGN-E321075 [cTOB-13-E21]">
      <seq>ccagagctacaactaaaccgtttgagaggttacatgaatggtgtggtaaaccaagaacttcttacacataaggaagtggtgcaactatccaagaaaatcaaatttggtctttatttagaagaacagaaggccagtctgaaggaaagattgggatgtgaaccttctgacgatcaactcgcggtttccttgaagatgtctcttgctgatttacgatctacattaatggagtgttccttggctagagaaaaacttgcaatgagcaatgttcgtcttgtcatgtcaattgcgcaaagatacgatagcatgggtactgaaatggctgacctcattcagttccctcatatgcatgtaggggggacttattggactacttcgcgggatagagaaatttgatcactcaagaggattcaaaatctcaacttatgtttattggtggattcgtcagggcgtttcccgagcattagttgataactcaagaacattgagattgcccatacatctacatgaaagactgagtttgatccgtaatgcaaaagtcaagcttaaagatagtggaataactccatcaatcgaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0113N10.1" temp_strand="-" temp_description="C06SLm0113N10.1  AC219227.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0113N10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="95375" stop="93283"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95075" g_stop="94942" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="134" r_length="134" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94941" i_stop="94233" i_length="709">
            <donor d_prob="0.877" d_score="1.00"/>
            <acceptor a_prob="0.628" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94232" g_stop="94034" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="333" r_length="199" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94033" i_stop="93933" i_length="101">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93932" g_stop="93821" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="445" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="93820" i_stop="93712" i_length="109">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.888" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="93711" g_stop="93583" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="446" r_stop="574" r_length="129" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0113N10.1" gen_strand="-" ref_id="SGN-E321075" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>574</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0113N10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E321075" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95075" e_stop="94942"/>
          <exon e_start="94232" e_stop="94034"/>
          <exon e_start="93932" e_stop="93821"/>
          <exon e_start="93711" e_stop="93583"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAGAGCTACAACAAAACCGTTTGAGAGGTTACATGAATGGTGTCGTAAACCAAGAACTTCTTACACATAAGGAAGTGGTGCAACTATCCAAGAAAATCAAATTTGGTCTTTATTTAGAAGAACAGAAGGCCAGGTACTAAACTCACAACTTCCTCCAACCGTGCCACCCTACTTTCTCAAACATCAGAACAGACTTTAGTAGCTGATCGTCTCTTCGGTGAAAATTACTATAAAGAACTTAAGAAATATTGTAGAAAGAGTGAGATAAACTGCATGAATTATATTTTTTACCCATGAGAAGCAGAGTCATGAGGTTAATCTTTCTCAAATACCCCATCCAAACGTTCTGTTCCGATATTGTCCAACTGCTTTTGATGTTTTCCTAAATACATTGCTTTCATAATATTGGAGGTCATGTTGCTGCCAATGTTTTAGTAGTGCTTGAAACTCATTATAAGAAAGAGTTAATAGCCTTTATGATTGCTGTGAGACTGAACCAGATTTAAGCCAGTCTTAATGTTGCTAATGGTAGCTAGCTTCCTTATCTAATAATAAATGAGGTATAATAAACAGGATGGAGACAGAATGCAGGAGAAGTGTTCAGATAATCTAGAGAGTTACTACTTCTTAGCATGTTTCTCTTTATAATTGTCAAAATGTAGTTGTGCCTTCTTGAAGGTTATGATTTCTATGTTAATGACAGCTTGACTTCTTTACGCTATCACATTGAAGGGATTTTTTTTTAAGTTGAATTGATAGTGATATTTTGGACTAGGTATTTTCTTTCAAAATGTGTTTTAGAGATTGTTTACTCAGCTTGATTAATCCATGGAAAATTTTAGTCTGAAGGAAAGATTGGGATGTGAACCTTCTGACGATCAACTCGCGGTTTCCTTGAAGATGTCTCTTGCTGATTTACGATCTACATTAATGGAGTGTTCCTTGGCTAGAGAAAAACTTGCAATGAGCAATGTTCGTCTTGTCATGTCAATTGCGCAAAGATACGATAGCATGGGTACTGAAATGGCTGACCTCATTCAGGTAACTTTTACTGTGCAAACAAAGCTACAGATGCAGAACTTCTTGCATTTGTGCATTGGTTATTATACTGTAAGCTCAAACGTGGCAATTCTTGAGGAAAGTTCCCTCATATGCATGTAGGGGGGACTTATTGGACTACTTCGCGGGATAGAGAAATTTGATCACTCAAGAGGATTCAAAATCTCAACTTATGTTTATTGGTGGATTCGTCAGGTGAGATTACTATTTAGTTTTGTTTTTCCGTTTCTTGAAGACAACACTAGTTTGTGTTGTAAAATGACGAGGACCTTCATTACCTATTGGCTATTTCCCCATTTCTCAGGGCGTTTCCCGAGCATTAGTTGATAACTCAAGAACATTGAGATTGCCCATACATCTACATGAAAGACTGAGTTTGATCCGTAATGCAAAAGTCAAGCTTAAAGATAGTGGAATAACTCCATCAATCGAA</genome_strand>
        <mrna_strand>CCAGAGCTACAACTAAACCGTTTGAGAGGTTACATGAATGGTGTGGTAAACCAAGAACTTCTTACACATAAGGAAGTGGTGCAACTATCCAAGAAAATCAAATTTGGTCTTTATTTAGAAGAACAGAAGGCCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGAAGGAAAGATTGGGATGTGAACCTTCTGACGATCAACTCGCGGTTTCCTTGAAGATGTCTCTTGCTGATTTACGATCTACATTAATGGAGTGTTCCTTGGCTAGAGAAAAACTTGCAATGAGCAATGTTCGTCTTGTCATGTCAATTGCGCAAAGATACGATAGCATGGGTACTGAAATGGCTGACCTCATTCAG.....................................................................................................TTCCCTCATATGCATGTAGGGGGGACTTATTGGACTACTTCGCGGGATAGAGAAATTTGATCACTCAAGAGGATTCAAAATCTCAACTTATGTTTATTGGTGGATTCGTCAG.............................................................................................................GGCGTTTCCCGAGCATTAGTTGATAACTCAAGAACATTGAGATTGCCCATACATCTACATGAAAGACTGAGTTTGATCCGTAATGCAAAAGTCAAGCTTAAAGATAGTGGAATAACTCCATCAATCGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E282813" ref_strand="+" ref_description="SGN-E282813 [cLER-15-G2]">
      <seq>tgagatctgttgtcggtccagagctacaacaaaaccgtttgagaggttacatgaatggtgtcgtaaaccaagaacttcttacacataaggaagtggtgcaactatccaagaaaatcaaatttggtctttatttagaagaacagaaggccagtctgaaggaaagattgggatgtgaaccttctgacgatcaactcgcggtttccttgaagatgtctcttgctgatttacgatctacattaatggagtgttccttggctagagaaaaacttgcaatgagcaatgttcgtcttgtcatgtcaattgcgcaaagatacgatagcatgggtactgaaatggctgacctcattcaggggggacttattggactacttcgcgggatagagagatttgatcacttcagaggattcaaaatcttaacttatgtttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0113N10.1" temp_strand="-" temp_description="C06SLm0113N10.1  AC219227.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0113N10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="95392" stop="93536"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95092" g_stop="94942" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94941" i_stop="94233" i_length="709">
            <donor d_prob="0.877" d_score="1.00"/>
            <acceptor a_prob="0.628" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94232" g_stop="94034" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="350" r_length="199" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94033" i_stop="93914" i_length="120">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.871" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="93913" g_stop="93836" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="428" r_length="78" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0113N10.1" gen_strand="-" ref_id="SGN-E282813" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>428</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0113N10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E282813" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95092" e_stop="94942"/>
          <exon e_start="94232" e_stop="94034"/>
          <exon e_start="93913" e_stop="93836"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGATCTGTTGTCGGTCCAGAGCTACAACAAAACCGTTTGAGAGGTTACATGAATGGTGTCGTAAACCAAGAACTTCTTACACATAAGGAAGTGGTGCAACTATCCAAGAAAATCAAATTTGGTCTTTATTTAGAAGAACAGAAGGCCAGGTACTAAACTCACAACTTCCTCCAACCGTGCCACCCTACTTTCTCAAACATCAGAACAGACTTTAGTAGCTGATCGTCTCTTCGGTGAAAATTACTATAAAGAACTTAAGAAATATTGTAGAAAGAGTGAGATAAACTGCATGAATTATATTTTTTACCCATGAGAAGCAGAGTCATGAGGTTAATCTTTCTCAAATACCCCATCCAAACGTTCTGTTCCGATATTGTCCAACTGCTTTTGATGTTTTCCTAAATACATTGCTTTCATAATATTGGAGGTCATGTTGCTGCCAATGTTTTAGTAGTGCTTGAAACTCATTATAAGAAAGAGTTAATAGCCTTTATGATTGCTGTGAGACTGAACCAGATTTAAGCCAGTCTTAATGTTGCTAATGGTAGCTAGCTTCCTTATCTAATAATAAATGAGGTATAATAAACAGGATGGAGACAGAATGCAGGAGAAGTGTTCAGATAATCTAGAGAGTTACTACTTCTTAGCATGTTTCTCTTTATAATTGTCAAAATGTAGTTGTGCCTTCTTGAAGGTTATGATTTCTATGTTAATGACAGCTTGACTTCTTTACGCTATCACATTGAAGGGATTTTTTTTTAAGTTGAATTGATAGTGATATTTTGGACTAGGTATTTTCTTTCAAAATGTGTTTTAGAGATTGTTTACTCAGCTTGATTAATCCATGGAAAATTTTAGTCTGAAGGAAAGATTGGGATGTGAACCTTCTGACGATCAACTCGCGGTTTCCTTGAAGATGTCTCTTGCTGATTTACGATCTACATTAATGGAGTGTTCCTTGGCTAGAGAAAAACTTGCAATGAGCAATGTTCGTCTTGTCATGTCAATTGCGCAAAGATACGATAGCATGGGTACTGAAATGGCTGACCTCATTCAGGTAACTTTTACTGTGCAAACAAAGCTACAGATGCAGAACTTCTTGCATTTGTGCATTGGTTATTATACTGTAAGCTCAAACGTGGCAATTCTTGAGGAAAGTTCCCTCATATGCATGTAGGGGGGACTTATTGGACTACTTCGCGGGATAGAGAAATTTGATCACTCAAGAGGATTCAAAATCTCAACTTATGTTTAT</genome_strand>
        <mrna_strand>TGAGATCTGTTGTCGGTCCAGAGCTACAACAAAACCGTTTGAGAGGTTACATGAATGGTGTCGTAAACCAAGAACTTCTTACACATAAGGAAGTGGTGCAACTATCCAAGAAAATCAAATTTGGTCTTTATTTAGAAGAACAGAAGGCCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGAAGGAAAGATTGGGATGTGAACCTTCTGACGATCAACTCGCGGTTTCCTTGAAGATGTCTCTTGCTGATTTACGATCTACATTAATGGAGTGTTCCTTGGCTAGAGAAAAACTTGCAATGAGCAATGTTCGTCTTGTCATGTCAATTGCGCAAAGATACGATAGCATGGGTACTGAAATGGCTGACCTCATTCAG........................................................................................................................GGGGGACTTATTGGACTACTTCGCGGGATAGAGAGATTTGATCACTTCAGAGGATTCAAAATCTTAACTTATGTTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E736481" ref_strand="+" ref_description="SGN-E736481 [LC05DG06]">
      <seq>agaaaacattggaagctttcccaccaaatgaaaagaactgtaaaaagaagatgcagatcacttgttcaggaacttctgctaggcggaggagaatggatactcgtaaaagagttcaaattccaaaagcttcagctgaagcaaatagtgcaagcaagcgactgagatctgttgtcggtccagagctacaacaaaaccgtttgagaggttacatgaatggtgtcgtaaaccaagaacttcttacacataaggaagtggtgcaactatccaagaaaatcaaatttggtctttatttagaagaacagaaggccaggtactaaactcacaacttcctccaaccgtgccaccctactttctcaaacatcagaacagactttagtagctgatcgtctcttcggtgaaaattactataaagaacttaagaaatattgtagaaagagtgagataaactgcatgaattatattttttacccatgagaagcagagtcatgaggttaatctttctcaaataccccatccaaacgttctgttccgatattgtccaactgcttttgatgttttcctaaatacattgctttcataatattggaggtcatgttgctgccaatgttttagtagtgcttgaaactcattataagaaagagttaatagcctttatgattgctgtgagactgaaccagatttaagccagtcttaatgttgctaatggtagctagcttccttatctaataataaatgaggtataat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0113N10.1" temp_strand="-" temp_description="C06SLm0113N10.1  AC219227.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0113N10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="95551" stop="94208"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95251" g_stop="94508" g_length="744"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="744" r_length="744" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0113N10.1" gen_strand="-" ref_id="SGN-E736481" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>744</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0113N10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E736481" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95251" e_stop="94508"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAACATTGGAAGCTTTCCCACCAAATGAAAAGAACTGTAAAAAGAAGATGCAGATCACTTGTTCAGGAACTTCTGCTAGGCGGAGGAGAATGGATACTCGTAAAAGAGTTCAAATTCCAAAAGCTTCAGCTGAAGCAAATAGTGCAAGCAAGCGACTGAGATCTGTTGTCGGTCCAGAGCTACAACAAAACCGTTTGAGAGGTTACATGAATGGTGTCGTAAACCAAGAACTTCTTACACATAAGGAAGTGGTGCAACTATCCAAGAAAATCAAATTTGGTCTTTATTTAGAAGAACAGAAGGCCAGGTACTAAACTCACAACTTCCTCCAACCGTGCCACCCTACTTTCTCAAACATCAGAACAGACTTTAGTAGCTGATCGTCTCTTCGGTGAAAATTACTATAAAGAACTTAAGAAATATTGTAGAAAGAGTGAGATAAACTGCATGAATTATATTTTTTACCCATGAGAAGCAGAGTCATGAGGTTAATCTTTCTCAAATACCCCATCCAAACGTTCTGTTCCGATATTGTCCAACTGCTTTTGATGTTTTCCTAAATACATTGCTTTCATAATATTGGAGGTCATGTTGCTGCCAATGTTTTAGTAGTGCTTGAAACTCATTATAAGAAAGAGTTAATAGCCTTTATGATTGCTGTGAGACTGAACCAGATTTAAGCCAGTCTTAATGTTGCTAATGGTAGCTAGCTTCCTTATCTAATAATAAATGAGGTATAAT</genome_strand>
        <mrna_strand>AGAAAACATTGGAAGCTTTCCCACCAAATGAAAAGAACTGTAAAAAGAAGATGCAGATCACTTGTTCAGGAACTTCTGCTAGGCGGAGGAGAATGGATACTCGTAAAAGAGTTCAAATTCCAAAAGCTTCAGCTGAAGCAAATAGTGCAAGCAAGCGACTGAGATCTGTTGTCGGTCCAGAGCTACAACAAAACCGTTTGAGAGGTTACATGAATGGTGTCGTAAACCAAGAACTTCTTACACATAAGGAAGTGGTGCAACTATCCAAGAAAATCAAATTTGGTCTTTATTTAGAAGAACAGAAGGCCAGGTACTAAACTCACAACTTCCTCCAACCGTGCCACCCTACTTTCTCAAACATCAGAACAGACTTTAGTAGCTGATCGTCTCTTCGGTGAAAATTACTATAAAGAACTTAAGAAATATTGTAGAAAGAGTGAGATAAACTGCATGAATTATATTTTTTACCCATGAGAAGCAGAGTCATGAGGTTAATCTTTCTCAAATACCCCATCCAAACGTTCTGTTCCGATATTGTCCAACTGCTTTTGATGTTTTCCTAAATACATTGCTTTCATAATATTGGAGGTCATGTTGCTGCCAATGTTTTAGTAGTGCTTGAAACTCATTATAAGAAAGAGTTAATAGCCTTTATGATTGCTGTGAGACTGAACCAGATTTAAGCCAGTCTTAATGTTGCTAATGGTAGCTAGCTTCCTTATCTAATAATAAATGAGGTATAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E320344" ref_strand="+" ref_description="SGN-E320344 [cTOB-22-I11]">
      <seq>tcttcatcaatcgtcattgctaaattcagaagcttgagaagggaggttaaattccagaatcaatatagctcttagtcatcactcatcagctggtatggttgtgattcagaaaccttgttaaacacggtgtgtggttttggatttttcatagttgtagcgcttgtgatggccattgctgcagttatcggaccctatgcaggaaatagaatcttaagctcgtctttctattattctgatctgactgaaaagttagcttgtagtggtgatcatgctttgatctgcaatcctacgagaaatgtgatcaatgctaagaagtcatccaattatagcgctggttatgtttccaatcgaaaaaaacaatccgttaaggctgttaaagagcatgtcaacattgcctctaatcattctgatgtggagccaatggttgaaatgttaaaaaaactgcagaatgaaagctgcagcaaagaagatccggtggaggttcttcttcttctgcagaaatctatgcttgaaaaacagtggaatctttcagctgagaaaacattggaagctttcccaccaaatgaaaagaactgtaaaaagaagatgcagatcacttgttcaggaacttctgctangcggaggagaatggatactcgtaaaagagttcaaattccaaaagcttcagctgaagcaaatagtgcaagcaagcgactggagaatctgtgtcggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0113N10.1" temp_strand="-" temp_description="C06SLm0113N10.1  AC219227.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0113N10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="96562" stop="94776"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96262" g_stop="96234" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="29" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96233" i_stop="95758" i_length="476">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95757" g_stop="95076" g_length="682"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="712" r_length="683" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0113N10.1" gen_strand="-" ref_id="SGN-E320344" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>711</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0113N10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E320344" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96262" e_stop="96234"/>
          <exon e_start="95757" e_stop="95076"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCATCAATCGTCATTGCTAAATTCAGGTAAATAAGCTGAACAGATCACCTGAGATCTTCATATATTACTCTTGTTTGATTTGATTGTTCTTACTTACTGTAAATCTGCAGTACATTCCCTCGTATTGATCGCCTTTTATGCTTTCTGGTTATGATTGCGTAACTGTGTTATATTCTGCATCTATTGCACAAACTTCATACATTACTAGGCTATTAGATATGTAAATACTGGCATGTTTCTCGAATTTATTCATGTTCGGTGAAATTTTCTGTTATGAAGATCCATTTTGTGAACTAGATGACTAGTACAACTCGGTTTCACTCCAACGGCTAATTATAGATTAAAGTAGCATAAATTTGCTGTTTTCATAGCTTATAGATAAGTTGATTGGTCAAAAAACTCGTGGTAGCTTGTTTGTATGGATTTTTCGTTTACAATCCTTACTTTAGAAATTATAATTAATTATTTTTTGTGTTGTTTCTTATTGTGTACTTCCTGCCAGAAGCTTGAGAAGGGAGGTTAAATTCCAGAATCAATATAGCTCTTAGTCATCACTCATCAGCTGGTATGGTTGTGATTCAGAAACCTTGTTAAACACGGTGTGTGGTTTTGGATTTTTCATAGTTGTAGCGCTTGTGATGGCCATTGCTGCAGTTATCGGACCCTATGCAGGAAATAGAATCTTAAGCTCGTCTTTCTATTATTCTGATCTGACTGAAAAGTTAGCTTGTAGTGGTGATCATGCTTTGATCTGCAATCCTACGAGAAATGTGATCAATGCTAAGAAGTCATCCAATTATAGCGCTGGTTATGTTTCCAATCGAAAAAAACAATCCGTTAAGGCTGTTAAAGAGCATGTCAACATTGCCTCTAATCATTCTGATGTGGAGCCAATGGTTGAAATGTTAAAAAAACTGCAGAATGAAAGCTGCAGCAAAGAAGATCCGGTGGAGGTTCTTCTTCTTCTGCAGAAATCTATGCTTGAAAAACAGTGGAATCTTTCAGCTGAGAAAACATTGGAAGCTTTCCCACCAAATGAAAAGAACTGTAAAAAGAAGATGCAGATCACTTGTTCAGGAACTTCTGCTAGGCGGAGGAGAATGGATACTCGTAAAAGAGTTCAAATTCCAAAAGCTTCAGCTGAAGCAAATAGTGCAAGCAAGCGACT-GAG-ATCTGTTGTCGGT</genome_strand>
        <mrna_strand>TCTTCATCAATCGTCATTGCTAAATTCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCTTGAGAAGGGAGGTTAAATTCCAGAATCAATATAGCTCTTAGTCATCACTCATCAGCTGGTATGGTTGTGATTCAGAAACCTTGTTAAACACGGTGTGTGGTTTTGGATTTTTCATAGTTGTAGCGCTTGTGATGGCCATTGCTGCAGTTATCGGACCCTATGCAGGAAATAGAATCTTAAGCTCGTCTTTCTATTATTCTGATCTGACTGAAAAGTTAGCTTGTAGTGGTGATCATGCTTTGATCTGCAATCCTACGAGAAATGTGATCAATGCTAAGAAGTCATCCAATTATAGCGCTGGTTATGTTTCCAATCGAAAAAAACAATCCGTTAAGGCTGTTAAAGAGCATGTCAACATTGCCTCTAATCATTCTGATGTGGAGCCAATGGTTGAAATGTTAAAAAAACTGCAGAATGAAAGCTGCAGCAAAGAAGATCCGGTGGAGGTTCTTCTTCTTCTGCAGAAATCTATGCTTGAAAAACAGTGGAATCTTTCAGCTGAGAAAACATTGGAAGCTTTCCCACCAAATGAAAAGAACTGTAAAAAGAAGATGCAGATCACTTGTTCAGGAACTTCTGCTANGCGGAGGAGAATGGATACTCGTAAAAGAGTTCAAATTCCAAAAGCTTCAGCTGAAGCAAATAGTGCAAGCAAGCGACTGGAGAATCTG-TGTCGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E358137" ref_strand="+" ref_description="SGN-E358137 [cLHT-23-N16]">
      <seq>gttgatctgctttcctacgagaaatgtgatcaatgctaagaagtcatccaattatagcgctggttatgtttccaatcgaaaaaaacaatccgttaaggctgttaaagagcatgtaaacattgcctctaatcattctgatgtggagccaatggttgaaatgttaaaaaaactgcagaatgaaagctgcagcgaagaagatccggtggaggttcttcttctgctgcaaaaatctatgcttgaaaaacaatggaatctttcagctgagaaaacattggaagctttcccaccaaatgaaaagaactgtaaaaagaagatgcagatcacttgttcaggaacttctgctaggcggagaagaatggatactcgtaaaagagttcaaattccaaaaacttcagctgcagcaaatagtgcaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0113N10.1" temp_strand="-" temp_description="C06SLm0113N10.1  AC219227.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0113N10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="95813" stop="94801"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95514" g_stop="95101" g_length="414"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="414" r_length="414" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0113N10.1" gen_strand="-" ref_id="SGN-E358137" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>414</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0113N10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E358137" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95514" e_stop="95101"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGATCTGCAATCCTACGAGAAATGTGATCAATGCTAAGAAGTCATCCAATTATAGCGCTGGTTATGTTTCCAATCGAAAAAAACAATCCGTTAAGGCTGTTAAAGAGCATGTCAACATTGCCTCTAATCATTCTGATGTGGAGCCAATGGTTGAAATGTTAAAAAAACTGCAGAATGAAAGCTGCAGCAAAGAAGATCCGGTGGAGGTTCTTCTTCTTCTGCAGAAATCTATGCTTGAAAAACAGTGGAATCTTTCAGCTGAGAAAACATTGGAAGCTTTCCCACCAAATGAAAAGAACTGTAAAAAGAAGATGCAGATCACTTGTTCAGGAACTTCTGCTAGGCGGAGGAGAATGGATACTCGTAAAAGAGTTCAAATTCCAAAAGCTTCAGCTGAAGCAAATAGTGCAAG</genome_strand>
        <mrna_strand>GTTGATCTGCTTTCCTACGAGAAATGTGATCAATGCTAAGAAGTCATCCAATTATAGCGCTGGTTATGTTTCCAATCGAAAAAAACAATCCGTTAAGGCTGTTAAAGAGCATGTAAACATTGCCTCTAATCATTCTGATGTGGAGCCAATGGTTGAAATGTTAAAAAAACTGCAGAATGAAAGCTGCAGCGAAGAAGATCCGGTGGAGGTTCTTCTTCTGCTGCAAAAATCTATGCTTGAAAAACAATGGAATCTTTCAGCTGAGAAAACATTGGAAGCTTTCCCACCAAATGAAAAGAACTGTAAAAAGAAGATGCAGATCACTTGTTCAGGAACTTCTGCTAGGCGGAGAAGAATGGATACTCGTAAAAGAGTTCAAATTCCAAAAACTTCAGCTGCAGCAAATAGTGCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E415141" ref_strand="+" ref_description="SGN-E415141 [STM-20-H8]">
      <seq>gttattttccaccagtacttttcatccttcgaattaaaaaaattagaaagaaacaacacattttcatttcagttagcaacagaacacacactatctttcttcgtcattgctaaattcagaagattgagaagggggattaaattcgagaatcaacatagctcttagtctatcagctggtatggttgtaattcagaaaccttgttaaacgcggtgtatggtcttggattttagatagttgtagcgctcgtgatggccattgctgcagttattggactctatgcaggaaatagaatcctaagctcgtccttttattattctgatcttactgaaaagttagcttgtagtggtgatcatgctttgatctgcaatcctactaggaatgtgatcaatgctaagaagtcatccaattatagcgccggttatgtttccaatcgaaaaaaacaatctgttaaggctgttaaagagcatgtaaacattgcatctaatcattctgatgtggagccaatggttgaaatgttcaaaaagctgcagaatgaaagctgcagtgaagaagattcagtagaggttcttcttctgctgcagaaatctatgcttgaaaaacaatggaatctttcagctgagaaaacattggcagcttttccaccaaatgaaaagaactgtaaaaagaagatgcagatcacttgttcagggacttctgctaggcggaggagaatggatactcgtaaaagagttcaaattccaaaacttcagctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0113N10.1" temp_strand="-" temp_description="C06SLm0113N10.1  AC219227.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0113N10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="96631" stop="94817"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96292" g_stop="96234" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="119" r_length="47" r_score="0.780"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96233" i_stop="95758" i_length="476">
            <donor d_prob="0.999" d_score="0.76"/>
            <acceptor a_prob="0.980" a_score="0.84"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95757" g_stop="95116" g_length="642"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="754" r_length="635" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0113N10.1" gen_strand="-" ref_id="SGN-E415141" ref_strand="+">
        <total_alignment_score>0.919</total_alignment_score>
        <cumulative_length_of_scored_exons>701</cumulative_length_of_scored_exons>
        <coverage percentage="0.930" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0113N10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E415141" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96292" e_stop="96234"/>
          <exon e_start="95757" e_stop="95116"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGCAACTGAACACACTCACGCTTATCTTTCTTCATCAATCGTCATTGCTAAATTCAGGTAAATAAGCTGAACAGATCACCTGAGATCTTCATATATTACTCTTGTTTGATTTGATTGTTCTTACTTACTGTAAATCTGCAGTACATTCCCTCGTATTGATCGCCTTTTATGCTTTCTGGTTATGATTGCGTAACTGTGTTATATTCTGCATCTATTGCACAAACTTCATACATTACTAGGCTATTAGATATGTAAATACTGGCATGTTTCTCGAATTTATTCATGTTCGGTGAAATTTTCTGTTATGAAGATCCATTTTGTGAACTAGATGACTAGTACAACTCGGTTTCACTCCAACGGCTAATTATAGATTAAAGTAGCATAAATTTGCTGTTTTCATAGCTTATAGATAAGTTGATTGGTCAAAAAACTCGTGGTAGCTTGTTTGTATGGATTTTTCGTTTACAATCCTTACTTTAGAAATTATAATTAATTATTTTTTGTGTTGTTTCTTATTGTGTACTTCCTGCCAGAAGCTTGAGAAGGGAGGTTAAATTCCAGAATCAATATAGCTCTTAGTCATCACTCATCAGCTGGTATGGTTGTGATTCAGAAACCTTGTTAAACACGGTGTGTGGTTTTGGATTTTTCATAGTTGTAGCGCTTGTGATGGCCATTGCTGCAGTTATCGGACCCTATGCAGGAAATAGAATCTTAAGCTCGTCTTTCTATTATTCTGATCTGACTGAAAAGTTAGCTTGTAGTGGTGATCATGCTTTGATCTGCAATCCTACGAGAAATGTGATCAATGCTAAGAAGTCATCCAATTATAGCGCTGGTTATGTTTCCAATCGAAAAAAACAATCCGTTAAGGCTGTTAAAGAGCATGTCAACATTGCCTCTAATCATTCTGATGTGGAGCCAATGGTTGAAATGTTAAAAAAACTGCAGAATGAAAGCTGCAGCAAAGAAGATCCGGTGGAGGTTCTTCTTCTTCTGCAGAAATCTATGCTTGAAAAACAGTGGAATCTTTCAGCTGAGAAAACATTGGAAGCTTTCCCACCAAATGAAAAGAACTGTAAAAAGAAGATGCAGATCACTTGTTCAGGAACTTCTGCTAGGCGGAGGAGAATGGATACTCGTAAAAGAGTTCAAATTCCAAAAGCTTCAGCTGA</genome_strand>
        <mrna_strand>TTAGCAACAGAACACA--CA--C-TATC--T-TTC-T---TCGTCATTGCTAAATTCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGATTGAGAAGGGGGATTAAATTCGAGAATCAACATAGCTCTTAG---T--CT-ATCAGCTGGTATGGTTGTAATTCAGAAACCTTGTTAAACGCGGTGTATGGTCTTGGATTTTAGATAGTTGTAGCGCTCGTGATGGCCATTGCTGCAGTTATTGGACTCTATGCAGGAAATAGAATCCTAAGCTCGTCCTTTTATTATTCTGATCTTACTGAAAAGTTAGCTTGTAGTGGTGATCATGCTTTGATCTGCAATCCTACTAGGAATGTGATCAATGCTAAGAAGTCATCCAATTATAGCGCCGGTTATGTTTCCAATCGAAAAAAACAATCTGTTAAGGCTGTTAAAGAGCATGTAAACATTGCATCTAATCATTCTGATGTGGAGCCAATGGTTGAAATGTTCAAAAAGCTGCAGAATGAAAGCTGCAGTGAAGAAGATTCAGTAGAGGTTCTTCTTCTGCTGCAGAAATCTATGCTTGAAAAACAATGGAATCTTTCAGCTGAGAAAACATTGGCAGCTTTTCCACCAAATGAAAAGAACTGTAAAAAGAAGATGCAGATCACTTGTTCAGGGACTTCTGCTAGGCGGAGGAGAATGGATACTCGTAAAAGAGTTCAAATTCCAAAA-CTTCAGCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E460501" ref_strand="+" ref_description="SGN-E460501 [cPRO-31-B7]">
      <seq>ctcattgctaaattcagaagattgagaagggagattaaatttgagaatcaacatagctcttaatcatcagctggtatggttgtaattcagaaaccttgttaaacgcggtgtatggtcttggattttaggaaggtgtagtgcttgtgatggccattgctgcagttatcggactctatgcaggaaatagaatcctaagctcgtccttttattattctgatcttactgaaaagttagcttgtagtggtgatcatgctttgatctgcaatcctacgaggaatgtgatcaatgctaagaagtcatccaattatagcaccggttatgtttccaatcgaaaaaaacaatctgttaaggctgttaaagagcatgtgaacattgcatctaatcattctgatgtggagccaatggttgaaatgttcaaaaagctgcagaatgaaagcttcagtgaagaagattcagtggaggttcttcttctgctgcagaaatctatgcttgaaaaacaatggaatctttcagctgagaaacattggcagcttttccaccaaatgtaaagaactgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0113N10.1" temp_strand="-" temp_description="C06SLm0113N10.1  AC219227.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0113N10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="96016" stop="94911"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95757" g_stop="95211" g_length="547"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="556" r_length="539" r_score="0.916"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0113N10.1" gen_strand="-" ref_id="SGN-E460501" ref_strand="+">
        <total_alignment_score>0.916</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0113N10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E460501" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95757" e_stop="95211"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCTTGAGAAGGGAGGTTAAATTCCAGAATCAATATAGCTCTTAGTCATCACTCATCAGCTGGTATGGTTGTGATTCAGAAACCTTGTTAAACACGGTGTGTGGTTTTGGATTTTTCATAGTTGTAGCGCTTGTGATGGCCATTGCTGCAGTTATCGGACCCTATGCAGGAAATAGAATCTTAAGCTCGTCTTTCTATTATTCTGATCTGACTGAAAAGTTAGCTTGTAGTGGTGATCATGCTTTGATCTGCAATCCTACGAGAAATGTGATCAATGCTAAGAAGTCATCCAATTATAGCGCTGGTTATGTTTCCAATCGAAAAAAACAATCCGTTAAGGCTGTTAAAGAGCATGTCAACATTGCCTCTAATCATTCTGATGTGGAGCCAATGGTTGAAATGTTAAAAAAACTGCAGAATGAAAGCTGCAGCAAAGAAGATCCGGTGGAGGTTCTTCTTCTTCTGCAGAAATCTATGCTTGAAAAACAGTGGAATCTTTCAGCTGAGAAAACATTGGAAGCTTTCCCACCAAATGAAAAGAACTGT</genome_strand>
        <mrna_strand>AAGATTGAGAAGGGAGATTAAATTTGAGAATCAACATAGCTC-T--T-A--A-TCATCAGCTGGTATGGTTGTAATTCAGAAACCTTGTTAAACGCGGTGTATGGTCTTGGATTTTAGGAAGGTGTAGTGCTTGTGATGGCCATTGCTGCAGTTATCGGACTCTATGCAGGAAATAGAATCCTAAGCTCGTCCTTTTATTATTCTGATCTTACTGAAAAGTTAGCTTGTAGTGGTGATCATGCTTTGATCTGCAATCCTACGAGGAATGTGATCAATGCTAAGAAGTCATCCAATTATAGCACCGGTTATGTTTCCAATCGAAAAAAACAATCTGTTAAGGCTGTTAAAGAGCATGTGAACATTGCATCTAATCATTCTGATGTGGAGCCAATGGTTGAAATGTTCAAAAAGCTGCAGAATGAAAGCTTCAGTGAAGAAGATTCAGTGGAGGTTCTTCTTCTGCTGCAGAAATCTATGCTTGAAAAACAATGGAATCTTTCAGCTGAG-AAACATTGGCAGCTTTTCCACCAAATGTAAAGAACTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E467522" ref_strand="+" ref_description="SGN-E467522 [cSTB-49-A10]">
      <seq>ttttcatttcagttagcaacagaacacacactatctttcttcgtcattgctaaattcagattgagaagggggattaaattcgagaatcaacatagctcttagtctatcagctggtatggttgtaattcagaaaccttgttaaacgcggtgtatggtcttggattttagatagttgtagcgctcgtgatggccattgctgcagttattggactctatgcaggaaatagaatcctaagctcgtccttttattattctgatcttactgaaaagttagcttgtagtggtgatcatgctttgatctgcaatcctactaggaatgtgatcaatgctaagaagtcatccaattatagcgccggttatgtttccaatcgaaaaaaacaatctgttaaggctgttaaagagcatgtaaacattgcatctaatcattctgatgtggagccaatggttgaaatgttcaaaaagctgcagaatgaaagctgcagtgaagaagattcagtagaggttcttcttctgctgcagaaatctatgcttgaaaaacaatggaatctttcagctgagaaaacattggcagcttttccaccaaatgaaaagaactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0113N10.1" temp_strand="-" temp_description="C06SLm0113N10.1  AC219227.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0113N10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="96604" stop="94912"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96304" g_stop="96234" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="0.817"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96233" i_stop="95755" i_length="479">
            <donor d_prob="0.999" d_score="0.76"/>
            <acceptor a_prob="0.496" a_score="0.80"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95754" g_stop="95212" g_length="543"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="596" r_length="537" r_score="0.924"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0113N10.1" gen_strand="-" ref_id="SGN-E467522" ref_strand="+">
        <total_alignment_score>0.912</total_alignment_score>
        <cumulative_length_of_scored_exons>614</cumulative_length_of_scored_exons>
        <coverage percentage="1.030" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0113N10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E467522" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96304" e_stop="96234"/>
          <exon e_start="95754" e_stop="95212"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCATTTCAGTTAGCAACTGAACACACTCACGCTTATCTTTCTTCATCAATCGTCATTGCTAAATTCAGGTAAATAAGCTGAACAGATCACCTGAGATCTTCATATATTACTCTTGTTTGATTTGATTGTTCTTACTTACTGTAAATCTGCAGTACATTCCCTCGTATTGATCGCCTTTTATGCTTTCTGGTTATGATTGCGTAACTGTGTTATATTCTGCATCTATTGCACAAACTTCATACATTACTAGGCTATTAGATATGTAAATACTGGCATGTTTCTCGAATTTATTCATGTTCGGTGAAATTTTCTGTTATGAAGATCCATTTTGTGAACTAGATGACTAGTACAACTCGGTTTCACTCCAACGGCTAATTATAGATTAAAGTAGCATAAATTTGCTGTTTTCATAGCTTATAGATAAGTTGATTGGTCAAAAAACTCGTGGTAGCTTGTTTGTATGGATTTTTCGTTTACAATCCTTACTTTAGAAATTATAATTAATTATTTTTTGTGTTGTTTCTTATTGTGTACTTCCTGCCAGAAGCTTGAGAAGGGAGGTTAAATTCCAGAATCAATATAGCTCTTAGTCATCACTCATCAGCTGGTATGGTTGTGATTCAGAAACCTTGTTAAACACGGTGTGTGGTTTTGGATTTTTCATAGTTGTAGCGCTTGTGATGGCCATTGCTGCAGTTATCGGACCCTATGCAGGAAATAGAATCTTAAGCTCGTCTTTCTATTATTCTGATCTGACTGAAAAGTTAGCTTGTAGTGGTGATCATGCTTTGATCTGCAATCCTACGAGAAATGTGATCAATGCTAAGAAGTCATCCAATTATAGCGCTGGTTATGTTTCCAATCGAAAAAAACAATCCGTTAAGGCTGTTAAAGAGCATGTCAACATTGCCTCTAATCATTCTGATGTGGAGCCAATGGTTGAAATGTTAAAAAAACTGCAGAATGAAAGCTGCAGCAAAGAAGATCCGGTGGAGGTTCTTCTTCTTCTGCAGAAATCTATGCTTGAAAAACAGTGGAATCTTTCAGCTGAGAAAACATTGGAAGCTTTCCCACCAAATGAAAAGAACTG</genome_strand>
        <mrna_strand>TTTTCATTTCAGTTAGCAACAGAACACA--CA--C-TATC--T-TTC-T---TCGTCATTGCTAAATTCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGAGAAGGGGGATTAAATTCGAGAATCAACATAGCTCTTAG---T--CT-ATCAGCTGGTATGGTTGTAATTCAGAAACCTTGTTAAACGCGGTGTATGGTCTTGGATTTTAGATAGTTGTAGCGCTCGTGATGGCCATTGCTGCAGTTATTGGACTCTATGCAGGAAATAGAATCCTAAGCTCGTCCTTTTATTATTCTGATCTTACTGAAAAGTTAGCTTGTAGTGGTGATCATGCTTTGATCTGCAATCCTACTAGGAATGTGATCAATGCTAAGAAGTCATCCAATTATAGCGCCGGTTATGTTTCCAATCGAAAAAAACAATCTGTTAAGGCTGTTAAAGAGCATGTAAACATTGCATCTAATCATTCTGATGTGGAGCCAATGGTTGAAATGTTCAAAAAGCTGCAGAATGAAAGCTGCAGTGAAGAAGATTCAGTAGAGGTTCTTCTTCTGCTGCAGAAATCTATGCTTGAAAAACAATGGAATCTTTCAGCTGAGAAAACATTGGCAGCTTTTCCACCAAATGAAAAGAACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E470774" ref_strand="+" ref_description="SGN-E470774 [cSTB-20-B7]">
      <seq>gtcattgctaaattcagaagattgagaagggggattaaattcgagaatcaacatagctcttagtctatcagctggtatggttgtaattcagaaaccttgttaaacgcggtgtatggtcttggattttagatagttgtagcgctcgtgatggccattgctgcagttattggactctatgcaggaaatagaatcctaagctcgtccttttattattctgatcttactgaaaagttagcttgtagtggtgatcatgctttgatctgcaatcctactaggaatgtgatcaatgctaagaagtcatccaattatagcgccggttatgtttccaatcgaaaaaaacaatctgttaaggctgttaaagagcatgtaaacattgcatctaatcattctgatgtggagccaatggttgaaatgttcaaaaagctgcagaatgaaagctgcagtgaagaagattcagtagaggttcttcttctgctgcagaaatctatgcttgaaaaacaatggaatctttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0113N10.1" temp_strand="-" temp_description="C06SLm0113N10.1  AC219227.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0113N10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="96016" stop="94957"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95757" g_stop="95257" g_length="501"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="512" r_length="495" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0113N10.1" gen_strand="-" ref_id="SGN-E470774" ref_strand="+">
        <total_alignment_score>0.922</total_alignment_score>
        <cumulative_length_of_scored_exons>501</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0113N10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E470774" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95757" e_stop="95257"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCTTGAGAAGGGAGGTTAAATTCCAGAATCAATATAGCTCTTAGTCATCACTCATCAGCTGGTATGGTTGTGATTCAGAAACCTTGTTAAACACGGTGTGTGGTTTTGGATTTTTCATAGTTGTAGCGCTTGTGATGGCCATTGCTGCAGTTATCGGACCCTATGCAGGAAATAGAATCTTAAGCTCGTCTTTCTATTATTCTGATCTGACTGAAAAGTTAGCTTGTAGTGGTGATCATGCTTTGATCTGCAATCCTACGAGAAATGTGATCAATGCTAAGAAGTCATCCAATTATAGCGCTGGTTATGTTTCCAATCGAAAAAAACAATCCGTTAAGGCTGTTAAAGAGCATGTCAACATTGCCTCTAATCATTCTGATGTGGAGCCAATGGTTGAAATGTTAAAAAAACTGCAGAATGAAAGCTGCAGCAAAGAAGATCCGGTGGAGGTTCTTCTTCTTCTGCAGAAATCTATGCTTGAAAAACAGTGGAATCTTTC</genome_strand>
        <mrna_strand>AAGATTGAGAAGGGGGATTAAATTCGAGAATCAACATAGCTCTTAG---T--CT-ATCAGCTGGTATGGTTGTAATTCAGAAACCTTGTTAAACGCGGTGTATGGTCTTGGATTTTAGATAGTTGTAGCGCTCGTGATGGCCATTGCTGCAGTTATTGGACTCTATGCAGGAAATAGAATCCTAAGCTCGTCCTTTTATTATTCTGATCTTACTGAAAAGTTAGCTTGTAGTGGTGATCATGCTTTGATCTGCAATCCTACTAGGAATGTGATCAATGCTAAGAAGTCATCCAATTATAGCGCCGGTTATGTTTCCAATCGAAAAAAACAATCTGTTAAGGCTGTTAAAGAGCATGTAAACATTGCATCTAATCATTCTGATGTGGAGCCAATGGTTGAAATGTTCAAAAAGCTGCAGAATGAAAGCTGCAGTGAAGAAGATTCAGTAGAGGTTCTTCTTCTGCTGCAGAAATCTATGCTTGAAAAACAATGGAATCTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E460785" ref_strand="+" ref_description="SGN-E460785 [cPRO-32-K4]">
      <seq>ctcattgctaaattcagaagattgagaagggagattaaatttgagaatcaacatagctcttaatcatcagctggtatggttgtaattcagaaaccttgttaaacgcggtgtatggtcttggattttaggaaggtgtagtgcttgtgatggccattgctgcagttatcggactctatgcaggaaatagaatcctaagctcgtccttttattattctgatcttactgaaaagttagcttgtagtggtgatcatgctttgatctgcaatcctacgaggaatgtgatcaatgctaagaagtcatccaattatagcaccggttatgtttccaatcgaaaaaaacaatctgttaaggctgttaaagagcatgtgaacattgcatctaatcattctgatgtggagccaatggttgaaatgttcaaaaagctgcagaatgaaagcttcagtgaagaagattcagtggaagttcttcttctgctgcagaaatctatgcttgaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0113N10.1" temp_strand="-" temp_description="C06SLm0113N10.1  AC219227.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0113N10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="96016" stop="94972"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95757" g_stop="95272" g_length="486"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="496" r_length="479" r_score="0.914"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0113N10.1" gen_strand="-" ref_id="SGN-E460785" ref_strand="+">
        <total_alignment_score>0.914</total_alignment_score>
        <cumulative_length_of_scored_exons>486</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0113N10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E460785" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95757" e_stop="95272"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCTTGAGAAGGGAGGTTAAATTCCAGAATCAATATAGCTCTTAGTCATCACTCATCAGCTGGTATGGTTGTGATTCAGAAACCTTGTTAAACACGGTGTGTGGTTTTGGATTTTTCATAGTTGTAGCGCTTGTGATGGCCATTGCTGCAGTTATCGGACCCTATGCAGGAAATAGAATCTTAAGCTCGTCTTTCTATTATTCTGATCTGACTGAAAAGTTAGCTTGTAGTGGTGATCATGCTTTGATCTGCAATCCTACGAGAAATGTGATCAATGCTAAGAAGTCATCCAATTATAGCGCTGGTTATGTTTCCAATCGAAAAAAACAATCCGTTAAGGCTGTTAAAGAGCATGTCAACATTGCCTCTAATCATTCTGATGTGGAGCCAATGGTTGAAATGTTAAAAAAACTGCAGAATGAAAGCTGCAGCAAAGAAGATCCGGTGGAGGTTCTTCTTCTTCTGCAGAAATCTATGCTTGAAAA</genome_strand>
        <mrna_strand>AAGATTGAGAAGGGAGATTAAATTTGAGAATCAACATAGCTC-T--T-A--A-TCATCAGCTGGTATGGTTGTAATTCAGAAACCTTGTTAAACGCGGTGTATGGTCTTGGATTTTAGGAAGGTGTAGTGCTTGTGATGGCCATTGCTGCAGTTATCGGACTCTATGCAGGAAATAGAATCCTAAGCTCGTCCTTTTATTATTCTGATCTTACTGAAAAGTTAGCTTGTAGTGGTGATCATGCTTTGATCTGCAATCCTACGAGGAATGTGATCAATGCTAAGAAGTCATCCAATTATAGCACCGGTTATGTTTCCAATCGAAAAAAACAATCTGTTAAGGCTGTTAAAGAGCATGTGAACATTGCATCTAATCATTCTGATGTGGAGCCAATGGTTGAAATGTTCAAAAAGCTGCAGAATGAAAGCTTCAGTGAAGAAGATTCAGTGGAAGTTCTTCTTCTGCTGCAGAAATCTATGCTTGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E314071" ref_strand="+" ref_description="SGN-E314071 [cTOA-19-G2]">
      <seq>acacttggttattttccaccagtacttttcatcattctaaattaaaaacacatttttcatttcagttagcaactgaacacactcacgcttatctttcttcatcaatcgtcattgctaaattcagaagcttgagaagggaggttaaattccagaatcaatatagctcttagtcatcactcatcagctggtatggttgtgattcagaaaccttgttaaacacggtgtgtggttttggatttttcatagttgtagcgcttgtgatggccattgctgcagttatcggaccctatgcaggaaatagaatcttaagctcgtctttctattattctgatctgactgaaaagttagcttgtagtggtgatcatgctttgatctgcaatcctacgagaaatgtgatcaatgctaagaagtcatccaattatagcgctggttatgtttccaatcgaaaaaaacaatccgttaaggctgttaaagagcatgtcaacattgcctctaatcattctgatgtggagccaatggttgaaatgttaaaaaaactgcagaatgaaagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0113N10.1" temp_strand="-" temp_description="C06SLm0113N10.1  AC219227.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0113N10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="96657" stop="95030"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96357" g_stop="96234" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="124" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96233" i_stop="95758" i_length="476">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95757" g_stop="95330" g_length="428"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="552" r_length="428" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0113N10.1" gen_strand="-" ref_id="SGN-E314071" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>552</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0113N10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E314071" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96357" e_stop="96234"/>
          <exon e_start="95757" e_stop="95330"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACTTGGTTATTTTCCACCAGTACTTTTCATCATTCTAAATTAAAAACACATTTTTCATTTCAGTTAGCAACTGAACACACTCACGCTTATCTTTCTTCATCAATCGTCATTGCTAAATTCAGGTAAATAAGCTGAACAGATCACCTGAGATCTTCATATATTACTCTTGTTTGATTTGATTGTTCTTACTTACTGTAAATCTGCAGTACATTCCCTCGTATTGATCGCCTTTTATGCTTTCTGGTTATGATTGCGTAACTGTGTTATATTCTGCATCTATTGCACAAACTTCATACATTACTAGGCTATTAGATATGTAAATACTGGCATGTTTCTCGAATTTATTCATGTTCGGTGAAATTTTCTGTTATGAAGATCCATTTTGTGAACTAGATGACTAGTACAACTCGGTTTCACTCCAACGGCTAATTATAGATTAAAGTAGCATAAATTTGCTGTTTTCATAGCTTATAGATAAGTTGATTGGTCAAAAAACTCGTGGTAGCTTGTTTGTATGGATTTTTCGTTTACAATCCTTACTTTAGAAATTATAATTAATTATTTTTTGTGTTGTTTCTTATTGTGTACTTCCTGCCAGAAGCTTGAGAAGGGAGGTTAAATTCCAGAATCAATATAGCTCTTAGTCATCACTCATCAGCTGGTATGGTTGTGATTCAGAAACCTTGTTAAACACGGTGTGTGGTTTTGGATTTTTCATAGTTGTAGCGCTTGTGATGGCCATTGCTGCAGTTATCGGACCCTATGCAGGAAATAGAATCTTAAGCTCGTCTTTCTATTATTCTGATCTGACTGAAAAGTTAGCTTGTAGTGGTGATCATGCTTTGATCTGCAATCCTACGAGAAATGTGATCAATGCTAAGAAGTCATCCAATTATAGCGCTGGTTATGTTTCCAATCGAAAAAAACAATCCGTTAAGGCTGTTAAAGAGCATGTCAACATTGCCTCTAATCATTCTGATGTGGAGCCAATGGTTGAAATGTTAAAAAAACTGCAGAATGAAAGCT</genome_strand>
        <mrna_strand>ACACTTGGTTATTTTCCACCAGTACTTTTCATCATTCTAAATTAAAAACACATTTTTCATTTCAGTTAGCAACTGAACACACTCACGCTTATCTTTCTTCATCAATCGTCATTGCTAAATTCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCTTGAGAAGGGAGGTTAAATTCCAGAATCAATATAGCTCTTAGTCATCACTCATCAGCTGGTATGGTTGTGATTCAGAAACCTTGTTAAACACGGTGTGTGGTTTTGGATTTTTCATAGTTGTAGCGCTTGTGATGGCCATTGCTGCAGTTATCGGACCCTATGCAGGAAATAGAATCTTAAGCTCGTCTTTCTATTATTCTGATCTGACTGAAAAGTTAGCTTGTAGTGGTGATCATGCTTTGATCTGCAATCCTACGAGAAATGTGATCAATGCTAAGAAGTCATCCAATTATAGCGCTGGTTATGTTTCCAATCGAAAAAAACAATCCGTTAAGGCTGTTAAAGAGCATGTCAACATTGCCTCTAATCATTCTGATGTGGAGCCAATGGTTGAAATGTTAAAAAAACTGCAGAATGAAAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E475203" ref_strand="+" ref_description="SGN-E475203 [cSTB-39-F15]">
      <seq>gttattttccaccagtacttttcatccttcgaattaaaaaaattagaaagaaacaacacattttcatttcagttagcaacagaacacacactatctttcttcgtcattgctaaattcagaagattgagaagggggattaaattcgagaatcaacatagctcttagtctatcagctggtatggttgtaattcagaaaccttgttaaacgcggtgtatggtcttggattttagatagttgtagcgctcgtgatggccattgctgcagttattggactctatgcaggaaatagaatcctaagctcgtccttttattattctgatcttactgaaaagttagcttgtagtggtgatcatgctttgatctgcaatcctactaggaatgtgatcaatgctaagaagtcatccaattatagcgccggttatgtttccaatcgaaaaaaacaatctgttaaggctgttaaagagcatgtaaacattgcatctaatcattctgatgtggagccaatggttgaaatgttcaaaaagctgcagaatgaaagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0113N10.1" temp_strand="-" temp_description="C06SLm0113N10.1  AC219227.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0113N10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="96631" stop="95030"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96292" g_stop="96234" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="119" r_length="47" r_score="0.780"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96233" i_stop="95758" i_length="476">
            <donor d_prob="0.999" d_score="0.76"/>
            <acceptor a_prob="0.980" a_score="0.84"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95757" g_stop="95330" g_length="428"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="541" r_length="422" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0113N10.1" gen_strand="-" ref_id="SGN-E475203" ref_strand="+">
        <total_alignment_score>0.908</total_alignment_score>
        <cumulative_length_of_scored_exons>487</cumulative_length_of_scored_exons>
        <coverage percentage="0.900" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0113N10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E475203" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96292" e_stop="96234"/>
          <exon e_start="95757" e_stop="95330"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGCAACTGAACACACTCACGCTTATCTTTCTTCATCAATCGTCATTGCTAAATTCAGGTAAATAAGCTGAACAGATCACCTGAGATCTTCATATATTACTCTTGTTTGATTTGATTGTTCTTACTTACTGTAAATCTGCAGTACATTCCCTCGTATTGATCGCCTTTTATGCTTTCTGGTTATGATTGCGTAACTGTGTTATATTCTGCATCTATTGCACAAACTTCATACATTACTAGGCTATTAGATATGTAAATACTGGCATGTTTCTCGAATTTATTCATGTTCGGTGAAATTTTCTGTTATGAAGATCCATTTTGTGAACTAGATGACTAGTACAACTCGGTTTCACTCCAACGGCTAATTATAGATTAAAGTAGCATAAATTTGCTGTTTTCATAGCTTATAGATAAGTTGATTGGTCAAAAAACTCGTGGTAGCTTGTTTGTATGGATTTTTCGTTTACAATCCTTACTTTAGAAATTATAATTAATTATTTTTTGTGTTGTTTCTTATTGTGTACTTCCTGCCAGAAGCTTGAGAAGGGAGGTTAAATTCCAGAATCAATATAGCTCTTAGTCATCACTCATCAGCTGGTATGGTTGTGATTCAGAAACCTTGTTAAACACGGTGTGTGGTTTTGGATTTTTCATAGTTGTAGCGCTTGTGATGGCCATTGCTGCAGTTATCGGACCCTATGCAGGAAATAGAATCTTAAGCTCGTCTTTCTATTATTCTGATCTGACTGAAAAGTTAGCTTGTAGTGGTGATCATGCTTTGATCTGCAATCCTACGAGAAATGTGATCAATGCTAAGAAGTCATCCAATTATAGCGCTGGTTATGTTTCCAATCGAAAAAAACAATCCGTTAAGGCTGTTAAAGAGCATGTCAACATTGCCTCTAATCATTCTGATGTGGAGCCAATGGTTGAAATGTTAAAAAAACTGCAGAATGAAAGCT</genome_strand>
        <mrna_strand>TTAGCAACAGAACACA--CA--C-TATC--T-TTC-T---TCGTCATTGCTAAATTCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGATTGAGAAGGGGGATTAAATTCGAGAATCAACATAGCTCTTAG---T--CT-ATCAGCTGGTATGGTTGTAATTCAGAAACCTTGTTAAACGCGGTGTATGGTCTTGGATTTTAGATAGTTGTAGCGCTCGTGATGGCCATTGCTGCAGTTATTGGACTCTATGCAGGAAATAGAATCCTAAGCTCGTCCTTTTATTATTCTGATCTTACTGAAAAGTTAGCTTGTAGTGGTGATCATGCTTTGATCTGCAATCCTACTAGGAATGTGATCAATGCTAAGAAGTCATCCAATTATAGCGCCGGTTATGTTTCCAATCGAAAAAAACAATCTGTTAAGGCTGTTAAAGAGCATGTAAACATTGCATCTAATCATTCTGATGTGGAGCCAATGGTTGAAATGTTCAAAAAGCTGCAGAATGAAAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E470543" ref_strand="+" ref_description="SGN-E470543 [cSTB-18-L5]">
      <seq>agaacacacactatctttcttcgtcattgctaaattcagaagattgagaagggggattaaattcgagaatcaacatagctcttagtctatcagctggtatggttgtaattcagaaaccttgttaaacgcggtgtatggtcttggattttagatagttgtagcgctcgtgatggccattgctgcagttattggactctatgcaggaaatagaatcctaagctcgtccttttattattctgatcttactgaaaagttagcttgtagtggtgatcatgctttgatctgcaatcctactaggaatgtgatcaatgctaagaagtcatccaattatagcgccggttatgtttccaatcgaaaaaaacaatctgttaaggctgttaaagagcatgtaaacattgcatctaatcattctgatgtggagccaatggttgaaatgttcaaaaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0113N10.1" temp_strand="-" temp_description="C06SLm0113N10.1  AC219227.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0113N10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="96016" stop="95045"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95757" g_stop="95345" g_length="413"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="446" r_length="407" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0113N10.1" gen_strand="-" ref_id="SGN-E470543" ref_strand="+">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>413</cumulative_length_of_scored_exons>
        <coverage percentage="0.926" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0113N10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E470543" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95757" e_stop="95345"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCTTGAGAAGGGAGGTTAAATTCCAGAATCAATATAGCTCTTAGTCATCACTCATCAGCTGGTATGGTTGTGATTCAGAAACCTTGTTAAACACGGTGTGTGGTTTTGGATTTTTCATAGTTGTAGCGCTTGTGATGGCCATTGCTGCAGTTATCGGACCCTATGCAGGAAATAGAATCTTAAGCTCGTCTTTCTATTATTCTGATCTGACTGAAAAGTTAGCTTGTAGTGGTGATCATGCTTTGATCTGCAATCCTACGAGAAATGTGATCAATGCTAAGAAGTCATCCAATTATAGCGCTGGTTATGTTTCCAATCGAAAAAAACAATCCGTTAAGGCTGTTAAAGAGCATGTCAACATTGCCTCTAATCATTCTGATGTGGAGCCAATGGTTGAAATGTTAAAAAAAC</genome_strand>
        <mrna_strand>AAGATTGAGAAGGGGGATTAAATTCGAGAATCAACATAGCTCTTAG---T--CT-ATCAGCTGGTATGGTTGTAATTCAGAAACCTTGTTAAACGCGGTGTATGGTCTTGGATTTTAGATAGTTGTAGCGCTCGTGATGGCCATTGCTGCAGTTATTGGACTCTATGCAGGAAATAGAATCCTAAGCTCGTCCTTTTATTATTCTGATCTTACTGAAAAGTTAGCTTGTAGTGGTGATCATGCTTTGATCTGCAATCCTACTAGGAATGTGATCAATGCTAAGAAGTCATCCAATTATAGCGCCGGTTATGTTTCCAATCGAAAAAAACAATCTGTTAAGGCTGTTAAAGAGCATGTAAACATTGCATCTAATCATTCTGATGTGGAGCCAATGGTTGAAATGTTCAAAAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E460776" ref_strand="+" ref_description="SGN-E460776 [cPRO-32-I4]">
      <seq>ctcattgctaaattcagaagattgagaagggagattaaatttgagaatcaacatagctcttaatcatcagctggtatggttgtaattcagaaaccttgttaaacgcggtgtatggtcttggattttangaaggtgtagtgcttgtgatggccattgctgcagttatcggactctatgcaggaaatagaatcctaagctcgtccttttattattctgatcttactgaaaagttagcttgtagtggtgatcatgctttgatctgcaatcctacgaggaatgtgatcaatgctaagaagtcatccaattatagcaccggttatgtttccaatcgaaaaaaacaatctgttaaggctgttaaagagcatgtgaacattgcatctaatcattctgatgtggagccaatgggtgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0113N10.1" temp_strand="-" temp_description="C06SLm0113N10.1  AC219227.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0113N10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="96016" stop="95058"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95757" g_stop="95358" g_length="400"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="410" r_length="393" r_score="0.915"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0113N10.1" gen_strand="-" ref_id="SGN-E460776" ref_strand="+">
        <total_alignment_score>0.915</total_alignment_score>
        <cumulative_length_of_scored_exons>400</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0113N10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E460776" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95757" e_stop="95358"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCTTGAGAAGGGAGGTTAAATTCCAGAATCAATATAGCTCTTAGTCATCACTCATCAGCTGGTATGGTTGTGATTCAGAAACCTTGTTAAACACGGTGTGTGGTTTTGGATTTTTCATAGTTGTAGCGCTTGTGATGGCCATTGCTGCAGTTATCGGACCCTATGCAGGAAATAGAATCTTAAGCTCGTCTTTCTATTATTCTGATCTGACTGAAAAGTTAGCTTGTAGTGGTGATCATGCTTTGATCTGCAATCCTACGAGAAATGTGATCAATGCTAAGAAGTCATCCAATTATAGCGCTGGTTATGTTTCCAATCGAAAAAAACAATCCGTTAAGGCTGTTAAAGAGCATGTCAACATTGCCTCTAATCATTCTGATGTGGAGCCAATGGTTGAA</genome_strand>
        <mrna_strand>AAGATTGAGAAGGGAGATTAAATTTGAGAATCAACATAGCTC-T--T-A--A-TCATCAGCTGGTATGGTTGTAATTCAGAAACCTTGTTAAACGCGGTGTATGGTCTTGGATTTTANGAAGGTGTAGTGCTTGTGATGGCCATTGCTGCAGTTATCGGACTCTATGCAGGAAATAGAATCCTAAGCTCGTCCTTTTATTATTCTGATCTTACTGAAAAGTTAGCTTGTAGTGGTGATCATGCTTTGATCTGCAATCCTACGAGGAATGTGATCAATGCTAAGAAGTCATCCAATTATAGCACCGGTTATGTTTCCAATCGAAAAAAACAATCTGTTAAGGCTGTTAAAGAGCATGTGAACATTGCATCTAATCATTCTGATGTGGAGCCAATGGGTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E345450" ref_strand="+" ref_description="SGN-E345450 [cTOF-13-P3]">
      <seq>tgagtgagtgagtgctctttctcccttagatctgatgctccatcactagaccacttccccccttttccttttctccataaaaagagaagagagagaaaaacgaaacctgtaacagatacatttccatttctgtttaacaatgggagaggaagagaagaaggtagaagaagtgaagaaagaggaggcaccgaaagatgaaaagccaagtgacggcggcggcggtgaagagaagaaagaggaaaaaaaggcggaggaagaatcgaaagaggcgaaaccagaacctccaccaccaccaccacctgaaattgttttgagagttttcatgcattgtgaaggttgtgctcgtaaagtccgcaaatcgctcaaaggatttcaaggagttgaagatgtgttgacggactgcaaaactcataaggttgtggtgaaaggggaaaaagcagatccgttgaaggtattggagagaatacagaaaaagagtcatcgtcaagttgagcttctctcaccaatcccaaaaccaccggagccggcggctgaagaacctaagaaaaccgnnagaaaagaagccgttaaacccgatgagaaaaaagaagagcctcangtcattacagtagttctgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0113N10.1" temp_strand="+" temp_description="C06SLm0113N10.1  AC219227.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0113N10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="105178" stop="106661"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105478" g_stop="105625" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="148" r_length="148" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105626" i_stop="105725" i_length="100">
            <donor d_prob="0.776" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105726" g_stop="105954" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="377" r_length="229" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105955" i_stop="106027" i_length="73">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106028" g_stop="106242" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="592" r_length="215" r_score="0.967"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106243" i_stop="106335" i_length="93">
            <donor d_prob="1.000" d_score="0.86"/>
            <acceptor a_prob="0.994" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106336" g_stop="106361" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="593" r_stop="618" r_length="26" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0113N10.1" gen_strand="+" ref_id="SGN-E345450" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>618</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0113N10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E345450" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105478" e_stop="105625"/>
          <exon e_start="105726" e_stop="105954"/>
          <exon e_start="106028" e_stop="106242"/>
          <exon e_start="106336" e_stop="106361"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGTGAGTGAGTGCTCTTTCTCCCTTAGATCTGATGCTCCATCACTAGACCACTTCCCCCCTTTTCCTTTTCTCCATAAAAAGAGAAGAGAGAGAAAAACGAAACCTGTAACAGATACATTTCCATTTCTGTTTAACAATGGGAGAGGTCGATTTGCTTTCTGCTCGTTACTTTTTTCTTTTCTTTTTGGTTGTTGAGATTTTTGATTGATTTGGTTGTGTTGCTTATTAGTAATTTTTTTATTCAGGAAGAGAAGAAGGTAGAAGAAGTGAAGAAAGAGGAGGCACCGAAAGATGAAAAGCCAAGTGACGGCGGCGGCGGTGAAGAGAAGAAAGAGGAAAAAAAGGCGGAGGAAGAATCGAAAGAGGCGAAACCAGAACCTCCACCACCACCACCACCTGAAATTGTTTTGAGAGTTTTCATGCATTGTGAAGGTTGTGCTCGTAAAGTCCGCAAATCGCTCAAAGGATTTCAAGGTACTAATAAGGATTTTTTTTTTTTAAATTTGGATGATTGATATAAAAATAAATTGAATGATTTTGTTTATAGGAGTTGAAGATGTGTTGACGGACTGCAAAACTCATAAGGTTGTGGTGAAAGGGGAAAAAGCAGATCCGTTGAAGGTATTGGAGAGAATACAGAAAAAGAGTCATCGTCAAGTTGAGCTTCTCTCACCAATCCCAAAACCACCGGAGCCGGCGGCTGAAGAACCTAAGAAACCGGAGGAAAAAGAAGCCGTTAAACCCGATGAGAAAAAAGAGGAGGTATATTTATTTATTTTATTTATTTCTCTCACTTTATTTGTTTTTAATGTAAAAGTCATATATGCAAATGGTTTTCTATGTTTGTTTGTGCAGCCTCAGGTCATTACAGTAGTTCTGAA</genome_strand>
        <mrna_strand>TGAGTGAGTGAGTGCTCTTTCTCCCTTAGATCTGATGCTCCATCACTAGACCACTTCCCCCCTTTTCCTTTTCTCCATAAAAAGAGAAGAGAGAGAAAAACGAAACCTGTAACAGATACATTTCCATTTCTGTTTAACAATGGGAGAG....................................................................................................GAAGAGAAGAAGGTAGAAGAAGTGAAGAAAGAGGAGGCACCGAAAGATGAAAAGCCAAGTGACGGCGGCGGCGGTGAAGAGAAGAAAGAGGAAAAAAAGGCGGAGGAAGAATCGAAAGAGGCGAAACCAGAACCTCCACCACCACCACCACCTGAAATTGTTTTGAGAGTTTTCATGCATTGTGAAGGTTGTGCTCGTAAAGTCCGCAAATCGCTCAAAGGATTTCAAG.........................................................................GAGTTGAAGATGTGTTGACGGACTGCAAAACTCATAAGGTTGTGGTGAAAGGGGAAAAAGCAGATCCGTTGAAGGTATTGGAGAGAATACAGAAAAAGAGTCATCGTCAAGTTGAGCTTCTCTCACCAATCCCAAAACCACCGGAGCCGGCGGCTGAAGAACCTAAGAAAACCGNNAGAAAAGAAGCCGTTAAACCCGATGAGAAAAAAGAAGAG.............................................................................................CCTCANGTCATTACAGTAGTTCTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E315927" ref_strand="+" ref_description="SGN-E315927 [cTOA-26-H9]">
      <seq>agtgagtgagtgctctttctcccttagatctgatgctccatcactagaccacttccccccttttccttttctccataaaaagagaagagagagaaaaacgaaacctgtaacagatacatttccatttctgtttaacaatgggagaggaagagaagaaggtagaagaagtgaagaaagaggaggcaccgaaagatgaaaagccaagtgacggcggcggcggtgaagagaagaaagaggaaaaaaaggcggaggaagaatcgaaagaggcgaaaccagaacctccaccaccaccaccacctgaaattgttttgagagttttcatgcattgtgaaggttgtgctcgtaaagtccgcaaatcgctcaaaggatttcaaggagttgaagatgtgttgacggactgcaaaactcataaggttgtggtgaaaggggaaaaagcagatccgttgaaggtattggagagaatacagaaaaagagtcatcgtcaagttgagcttctctcaccaatcccaaaaccaccggagccggcggctgaagaacctaagaaaccggaggaaaaagaagccgttaaacccgatgagaaaaaagaggagcctcaggtcattacagtagttctgaaagttcacatgcattgtgaggcttgtgcacaagaaatcaaaagacgtatacagaaaatgaaaggtgtggagaatgcagaaccggacttgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0113N10.1" temp_strand="+" temp_description="C06SLm0113N10.1  AC219227.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0113N10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="105180" stop="107404"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105480" g_stop="105625" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="146" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105626" i_stop="105725" i_length="100">
            <donor d_prob="0.776" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105726" g_stop="105954" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="375" r_length="229" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105955" i_stop="106027" i_length="73">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106028" g_stop="106242" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="590" r_length="215" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106243" i_stop="106335" i_length="93">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106336" g_stop="106423" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="591" r_stop="678" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="106424" i_stop="107075" i_length="652">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="107076" g_stop="107104" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="679" r_stop="707" r_length="29" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0113N10.1" gen_strand="+" ref_id="SGN-E315927" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>707</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0113N10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E315927" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105480" e_stop="105625"/>
          <exon e_start="105726" e_stop="105954"/>
          <exon e_start="106028" e_stop="106242"/>
          <exon e_start="106336" e_stop="106423"/>
          <exon e_start="107076" e_stop="107104"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTGAGTGAGTGCTCTTTCTCCCTTAGATCTGATGCTCCATCACTAGACCACTTCCCCCCTTTTCCTTTTCTCCATAAAAAGAGAAGAGAGAGAAAAACGAAACCTGTAACAGATACATTTCCATTTCTGTTTAACAATGGGAGAGGTCGATTTGCTTTCTGCTCGTTACTTTTTTCTTTTCTTTTTGGTTGTTGAGATTTTTGATTGATTTGGTTGTGTTGCTTATTAGTAATTTTTTTATTCAGGAAGAGAAGAAGGTAGAAGAAGTGAAGAAAGAGGAGGCACCGAAAGATGAAAAGCCAAGTGACGGCGGCGGCGGTGAAGAGAAGAAAGAGGAAAAAAAGGCGGAGGAAGAATCGAAAGAGGCGAAACCAGAACCTCCACCACCACCACCACCTGAAATTGTTTTGAGAGTTTTCATGCATTGTGAAGGTTGTGCTCGTAAAGTCCGCAAATCGCTCAAAGGATTTCAAGGTACTAATAAGGATTTTTTTTTTTTAAATTTGGATGATTGATATAAAAATAAATTGAATGATTTTGTTTATAGGAGTTGAAGATGTGTTGACGGACTGCAAAACTCATAAGGTTGTGGTGAAAGGGGAAAAAGCAGATCCGTTGAAGGTATTGGAGAGAATACAGAAAAAGAGTCATCGTCAAGTTGAGCTTCTCTCACCAATCCCAAAACCACCGGAGCCGGCGGCTGAAGAACCTAAGAAACCGGAGGAAAAAGAAGCCGTTAAACCCGATGAGAAAAAAGAGGAGGTATATTTATTTATTTTATTTATTTCTCTCACTTTATTTGTTTTTAATGTAAAAGTCATATATGCAAATGGTTTTCTATGTTTGTTTGTGCAGCCTCAGGTCATTACAGTAGTTCTGAAAGTTCACATGCATTGTGAGGCTTGTGCACAAGAAATCAAAAGACGTATACAGAAAATGAAAGGCAAGATTATTTAAAATTTTGGTTTTAATTTTAATTATTTTCATCTCTTTTTGCTTAATTAATTTACTACACCCTATTTTGCTTTCTGGTTTTGTGTTTGTTACACTTTTCAGCTGTATTTGTTGAAGAAAGTTTTTTTTTCTCCTTTTTGGATCTCTAAATTAGCATTGGATACTTGAGGATTCTATATTTTATATATCACCTTTCACTATCTAACATTTTTTATATTAGTCAGTAGGGAATAGAATATTCAATTCTTAATACGATTCTCTTAAAATTCTTCAATGTGTTAGTTTAATTCAAATCACATGTCTTCCAGTACTAAATATATTCACTTAATAAACTATTGATTTGAATCTTTGAAACCAATTTCTAGTATTGACTGTTAGGTTTCATCAAAAGTTGCAAGTAACTTAAGGAAATTAGTTGTGCATATGGAGTCTTCCACTACTAAATAGATTTTTTTTTTTGGATTTCGTTGTTTTTGTGTCTATTACTTCGAAAGTAGCTGCTTCAACTTCCCATCAAATTTTTGATATTCCTTTTTATTGATTGACATCTTCTTGAGGTATCCAATGCTAAAAACCTTAAAGTTTAGACTTATGGAGTTAAGATTCAAAATTCGTCTGACGTTAACTGTGCTTGAATTTAGGTGTGGAGAATGCAGAACCGGACTTGAAA</genome_strand>
        <mrna_strand>AGTGAGTGAGTGCTCTTTCTCCCTTAGATCTGATGCTCCATCACTAGACCACTTCCCCCCTTTTCCTTTTCTCCATAAAAAGAGAAGAGAGAGAAAAACGAAACCTGTAACAGATACATTTCCATTTCTGTTTAACAATGGGAGAG....................................................................................................GAAGAGAAGAAGGTAGAAGAAGTGAAGAAAGAGGAGGCACCGAAAGATGAAAAGCCAAGTGACGGCGGCGGCGGTGAAGAGAAGAAAGAGGAAAAAAAGGCGGAGGAAGAATCGAAAGAGGCGAAACCAGAACCTCCACCACCACCACCACCTGAAATTGTTTTGAGAGTTTTCATGCATTGTGAAGGTTGTGCTCGTAAAGTCCGCAAATCGCTCAAAGGATTTCAAG.........................................................................GAGTTGAAGATGTGTTGACGGACTGCAAAACTCATAAGGTTGTGGTGAAAGGGGAAAAAGCAGATCCGTTGAAGGTATTGGAGAGAATACAGAAAAAGAGTCATCGTCAAGTTGAGCTTCTCTCACCAATCCCAAAACCACCGGAGCCGGCGGCTGAAGAACCTAAGAAACCGGAGGAAAAAGAAGCCGTTAAACCCGATGAGAAAAAAGAGGAG.............................................................................................CCTCAGGTCATTACAGTAGTTCTGAAAGTTCACATGCATTGTGAGGCTTGTGCACAAGAAATCAAAAGACGTATACAGAAAATGAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGGAGAATGCAGAACCGGACTTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E454531" ref_strand="+" ref_description="SGN-E454531 [cSTS-23-J15]">
      <seq>agtgagtgctctttctcccttagatctgatgctccatcactagcctacttccccactttttcttttctccttaaaaagagaagagagagaaaaaaccaaacctgtaacaactacatttccatttctgtttaacaatgggcgaggaagagaagaaggtagaagaagtgaagaaagaggaggcaccgaaagatgaaaagccaagcgacggcggtggtggtgaagagaagaaagaggaaaaaaaggcggaggaagaaaaaaaagaggcaaaacctgaacctccaccaccaccaccggaaattgttttgagagttttcatgcattgtgaaggttgtgctcgtaaagtccgcaaatcgctcaaaggattccaaggagttgaagatgtgttgacggattgcaaaactcataaggttgtagtgaaaggggaaaaagcagatccgttgaaggtattggagagaatacagaaaaagagtcatcgtcaagttgagcttctctctccaatcccaaaaccaccggcggcggcggccgaagagcccaagaaaccggaggaaaaagaagccgttaaagccgaagagaaaaaagaggagcctcaggtgattacagtagttctgaaagttcacatgcattgtgaggctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0113N10.1" temp_strand="+" temp_description="C06SLm0113N10.1  AC219227.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0113N10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="105184" stop="106684"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105484" g_stop="105625" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="143" r_length="143" r_score="0.923"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105626" i_stop="105725" i_length="100">
            <donor d_prob="0.776" d_score="0.92"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105726" g_stop="105954" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="369" r_length="226" r_score="0.943"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105955" i_stop="106027" i_length="73">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106028" g_stop="106242" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="584" r_length="215" r_score="0.953"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106243" i_stop="106335" i_length="93">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106336" g_stop="106384" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="585" r_stop="633" r_length="49" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0113N10.1" gen_strand="+" ref_id="SGN-E454531" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>635</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0113N10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E454531" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105484" e_stop="105625"/>
          <exon e_start="105726" e_stop="105954"/>
          <exon e_start="106028" e_stop="106242"/>
          <exon e_start="106336" e_stop="106384"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTGAGTGCTCTTTCTCCCTTAGATCTGATGCTCCATCACTAGACCACTTCCCCCCTTTTCCTTTTCTCCATAAAAAGAGAAGAGAGAG-AAAAACGAAACCTGTAACAGATACATTTCCATTTCTGTTTAACAATGGGAGAGGTCGATTTGCTTTCTGCTCGTTACTTTTTTCTTTTCTTTTTGGTTGTTGAGATTTTTGATTGATTTGGTTGTGTTGCTTATTAGTAATTTTTTTATTCAGGAAGAGAAGAAGGTAGAAGAAGTGAAGAAAGAGGAGGCACCGAAAGATGAAAAGCCAAGTGACGGCGGCGGCGGTGAAGAGAAGAAAGAGGAAAAAAAGGCGGAGGAAGAATCGAAAGAGGCGAAACCAGAACCTCCACCACCACCACCACCTGAAATTGTTTTGAGAGTTTTCATGCATTGTGAAGGTTGTGCTCGTAAAGTCCGCAAATCGCTCAAAGGATTTCAAGGTACTAATAAGGATTTTTTTTTTTTAAATTTGGATGATTGATATAAAAATAAATTGAATGATTTTGTTTATAGGAGTTGAAGATGTGTTGACGGACTGCAAAACTCATAAGGTTGTGGTGAAAGGGGAAAAAGCAGATCCGTTGAAGGTATTGGAGAGAATACAGAAAAAGAGTCATCGTCAAGTTGAGCTTCTCTCACCAATCCCAAAACCACCGGAGCCGGCGGCTGAAGAACCTAAGAAACCGGAGGAAAAAGAAGCCGTTAAACCCGATGAGAAAAAAGAGGAGGTATATTTATTTATTTTATTTATTTCTCTCACTTTATTTGTTTTTAATGTAAAAGTCATATATGCAAATGGTTTTCTATGTTTGTTTGTGCAGCCTCAGGTCATTACAGTAGTTCTGAAAGTTCACATGCATTGTGAGGCTT</genome_strand>
        <mrna_strand>AGTGAGTGCTCTTTCTCCCTTAGATCTGATGCTCCATCACTAGCCTACTTCCCCACTTTTTCTTTTCTCCTTAAAAAGAGAAGAGAGAGAAAAAACCAAACCTGTAACAACTACATTTCCATTTCTGTTTAACAATGGGCGAG....................................................................................................GAAGAGAAGAAGGTAGAAGAAGTGAAGAAAGAGGAGGCACCGAAAGATGAAAAGCCAAGCGACGGCGGTGGTGGTGAAGAGAAGAAAGAGGAAAAAAAGGCGGAGGAAGAAAAAAAAGAGGCAAAACCTGAACCT---CCACCACCACCACCGGAAATTGTTTTGAGAGTTTTCATGCATTGTGAAGGTTGTGCTCGTAAAGTCCGCAAATCGCTCAAAGGATTCCAAG.........................................................................GAGTTGAAGATGTGTTGACGGATTGCAAAACTCATAAGGTTGTAGTGAAAGGGGAAAAAGCAGATCCGTTGAAGGTATTGGAGAGAATACAGAAAAAGAGTCATCGTCAAGTTGAGCTTCTCTCTCCAATCCCAAAACCACCGGCGGCGGCGGCCGAAGAGCCCAAGAAACCGGAGGAAAAAGAAGCCGTTAAAGCCGAAGAGAAAAAAGAGGAG.............................................................................................CCTCAGGTGATTACAGTAGTTCTGAAAGTTCACATGCATTGTGAGGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E451447" ref_strand="+" ref_description="SGN-E451447 [cSTS-12-F6]">
      <seq>gtgagtgctctttctcccttagatctgatgctccatcactagcctacttccccacactttttcttttctccataaaaagagaagagagagaaaaaaccaaacctgtaacagctacatttccatttctgtttaacaatgggagaggaagagaagaaggtagaagaaagtgaagaaagaggaggcaccgaaagatgaaaagccaagcgacggcggtggtggtgaagagaagaaagaggaaaaaaaggcggaggaagaatcaaaagaggcgaaaccagaacctccacctccaccaccggaaattgttttgagagttttcatgcattgtgaaggttgtgctcgtaaagtccgcaaatcgctcaaaggattccaaggagttgaagatgtgttgacggattgcaaaactcacaaggttgtagtgaaaggggaaaaagcagatccgttgaaggtattggagagaatacagaaaaagagtcatcgtcaagttgagcttctctctccaatcccaaaaccaccggcggcggcggcggccgaagagcccaagaaaccggaggaaaaagaagccgttaaagccgaagagaaaaaagaggagcctcaggtgattacagtagttctgaaagttcacatgcattgtgagggcttgtgcacaagaaatcanaagacgtatacagaaaatgaaaggtgtgggagaatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0113N10.1" temp_strand="+" temp_description="C06SLm0113N10.1  AC219227.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0113N10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="105185" stop="106724"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105485" g_stop="105625" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="144" r_length="144" r_score="0.922"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105626" i_stop="105725" i_length="100">
            <donor d_prob="0.776" d_score="0.96"/>
            <acceptor a_prob="0.989" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105726" g_stop="105954" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="371" r_length="227" r_score="0.948"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105955" i_stop="106027" i_length="73">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106028" g_stop="106242" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="589" r_length="218" r_score="0.926"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106243" i_stop="106335" i_length="93">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106336" g_stop="106423" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="590" r_stop="678" r_length="89" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0113N10.1" gen_strand="+" ref_id="SGN-E451447" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>673</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0113N10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E451447" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105485" e_stop="105625"/>
          <exon e_start="105726" e_stop="105954"/>
          <exon e_start="106028" e_stop="106242"/>
          <exon e_start="106336" e_stop="106423"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAGTGCTCTTTCTCCCTTAGATCTGATGCTCCATCACTAGACCACTTCCCC-C-CTTTTCCTTTTCTCCATAAAAAGAGAAGAGAGAG-AAAAACGAAACCTGTAACAGATACATTTCCATTTCTGTTTAACAATGGGAGAGGTCGATTTGCTTTCTGCTCGTTACTTTTTTCTTTTCTTTTTGGTTGTTGAGATTTTTGATTGATTTGGTTGTGTTGCTTATTAGTAATTTTTTTATTCAGGAAGAGAAGAAGGTAGAAG-AAGTGAAGAAAGAGGAGGCACCGAAAGATGAAAAGCCAAGTGACGGCGGCGGCGGTGAAGAGAAGAAAGAGGAAAAAAAGGCGGAGGAAGAATCGAAAGAGGCGAAACCAGAACCTCCACCACCACCACCACCTGAAATTGTTTTGAGAGTTTTCATGCATTGTGAAGGTTGTGCTCGTAAAGTCCGCAAATCGCTCAAAGGATTTCAAGGTACTAATAAGGATTTTTTTTTTTTAAATTTGGATGATTGATATAAAAATAAATTGAATGATTTTGTTTATAGGAGTTGAAGATGTGTTGACGGACTGCAAAACTCATAAGGTTGTGGTGAAAGGGGAAAAAGCAGATCCGTTGAAGGTATTGGAGAGAATACAGAAAAAGAGTCATCGTCAAGTTGAGCTTCTCTCACCAATCCCAAAACCACCGG-AGC--CGGCGGCTGAAGAACCTAAGAAACCGGAGGAAAAAGAAGCCGTTAAACCCGATGAGAAAAAAGAGGAGGTATATTTATTTATTTTATTTATTTCTCTCACTTTATTTGTTTTTAATGTAAAAGTCATATATGCAAATGGTTTTCTATGTTTGTTTGTGCAGCCTCAGGTCATTACAGTAGTTCTGAAAGTTCACATGCATTGTGA-GGCTTGTGCACAAGAAATCAAAAGACGTATACAGAAAATGAAAG</genome_strand>
        <mrna_strand>GTGAGTGCTCTTTCTCCCTTAGATCTGATGCTCCATCACTAGCCTACTTCCCCACACTTTTTCTTTTCTCCATAAAAAGAGAAGAGAGAGAAAAAACCAAACCTGTAACAGCTACATTTCCATTTCTGTTTAACAATGGGAGAG....................................................................................................GAAGAGAAGAAGGTAGAAGAAAGTGAAGAAAGAGGAGGCACCGAAAGATGAAAAGCCAAGCGACGGCGGTGGTGGTGAAGAGAAGAAAGAGGAAAAAAAGGCGGAGGAAGAATCAAAAGAGGCGAAACCAGAACCT---CCACCTCCACCACCGGAAATTGTTTTGAGAGTTTTCATGCATTGTGAAGGTTGTGCTCGTAAAGTCCGCAAATCGCTCAAAGGATTCCAAG.........................................................................GAGTTGAAGATGTGTTGACGGATTGCAAAACTCACAAGGTTGTAGTGAAAGGGGAAAAAGCAGATCCGTTGAAGGTATTGGAGAGAATACAGAAAAAGAGTCATCGTCAAGTTGAGCTTCTCTCTCCAATCCCAAAACCACCGGCGGCGGCGGCGGCCGAAGAGCCCAAGAAACCGGAGGAAAAAGAAGCCGTTAAAGCCGAAGAGAAAAAAGAGGAG.............................................................................................CCTCAGGTGATTACAGTAGTTCTGAAAGTTCACATGCATTGTGAGGGCTTGTGCACAAGAAATCANAAGACGTATACAGAAAATGAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E448218" ref_strand="+" ref_description="SGN-E448218 [cSTS-2-G6]">
      <seq>gtgagtgctctttctcccttagatctgatgctccatcactagcctacttccccacactttttcttttctccataaaaagagaagagagagaaaaaaccaaacctgtaacagctacatttccatttctgtttaacaatgggagaggaagagaagaaggtagaagaagtgaagaaagaggaggcaccgaaagatgaaaagccaagcgacggcggtggtggtgaagagaagaaagaggaaaaaaaggcggaggaagaatcaaaagaggcgaaaccagaacctccacctccaccaccggaaattgttttgagagttttcatgcattgtgaaggttgtgctcgtaaagtccgcaaatcgctcaaaggattccaaggagttgaagatgtgttgacggattgcaaaactcacaaggttgtagtgaaaggggaaaaagcagatccgttgaaggtattggagagaatacagaaaaagagtcatcgtcaagttgagcttctctctccaatcccaaaaccaccggcggcggcggcggccgaagagcccaagaaaccgggaggaaaaagagccgttaaagccgaagagaaaaagaggagcctcaggtgattacagtagttctgaaagttcacatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0113N10.1" temp_strand="+" temp_description="C06SLm0113N10.1  AC219227.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0113N10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="105185" stop="106671"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105485" g_stop="105625" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="144" r_length="144" r_score="0.922"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105626" i_stop="105725" i_length="100">
            <donor d_prob="0.776" d_score="0.96"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105726" g_stop="105954" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="370" r_length="226" r_score="0.956"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105955" i_stop="106027" i_length="73">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106028" g_stop="106242" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="587" r_length="217" r_score="0.907"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106243" i_stop="106335" i_length="93">
            <donor d_prob="1.000" d_score="0.88"/>
            <acceptor a_prob="0.994" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106336" g_stop="106371" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="588" r_stop="623" r_length="36" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0113N10.1" gen_strand="+" ref_id="SGN-E448218" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>621</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0113N10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E448218" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105485" e_stop="105625"/>
          <exon e_start="105726" e_stop="105954"/>
          <exon e_start="106028" e_stop="106242"/>
          <exon e_start="106336" e_stop="106371"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAGTGCTCTTTCTCCCTTAGATCTGATGCTCCATCACTAGACCACTTCCCC-C-CTTTTCCTTTTCTCCATAAAAAGAGAAGAGAGAG-AAAAACGAAACCTGTAACAGATACATTTCCATTTCTGTTTAACAATGGGAGAGGTCGATTTGCTTTCTGCTCGTTACTTTTTTCTTTTCTTTTTGGTTGTTGAGATTTTTGATTGATTTGGTTGTGTTGCTTATTAGTAATTTTTTTATTCAGGAAGAGAAGAAGGTAGAAGAAGTGAAGAAAGAGGAGGCACCGAAAGATGAAAAGCCAAGTGACGGCGGCGGCGGTGAAGAGAAGAAAGAGGAAAAAAAGGCGGAGGAAGAATCGAAAGAGGCGAAACCAGAACCTCCACCACCACCACCACCTGAAATTGTTTTGAGAGTTTTCATGCATTGTGAAGGTTGTGCTCGTAAAGTCCGCAAATCGCTCAAAGGATTTCAAGGTACTAATAAGGATTTTTTTTTTTTAAATTTGGATGATTGATATAAAAATAAATTGAATGATTTTGTTTATAGGAGTTGAAGATGTGTTGACGGACTGCAAAACTCATAAGGTTGTGGTGAAAGGGGAAAAAGCAGATCCGTTGAAGGTATTGGAGAGAATACAGAAAAAGAGTCATCGTCAAGTTGAGCTTCTCTCACCAATCCCAAAACCACCGG-AGC--CGGCGGCTGAAGAACCTAAGAAACC-GGAGGAAAAAGAAGCCGTTAAACCCGATGAGAAAAAAGAGGAGGTATATTTATTTATTTTATTTATTTCTCTCACTTTATTTGTTTTTAATGTAAAAGTCATATATGCAAATGGTTTTCTATGTTTGTTTGTGCAGCCTCAGGTCATTACAGTAGTTCTGAAAGTTCACATG</genome_strand>
        <mrna_strand>GTGAGTGCTCTTTCTCCCTTAGATCTGATGCTCCATCACTAGCCTACTTCCCCACACTTTTTCTTTTCTCCATAAAAAGAGAAGAGAGAGAAAAAACCAAACCTGTAACAGCTACATTTCCATTTCTGTTTAACAATGGGAGAG....................................................................................................GAAGAGAAGAAGGTAGAAGAAGTGAAGAAAGAGGAGGCACCGAAAGATGAAAAGCCAAGCGACGGCGGTGGTGGTGAAGAGAAGAAAGAGGAAAAAAAGGCGGAGGAAGAATCAAAAGAGGCGAAACCAGAACCT---CCACCTCCACCACCGGAAATTGTTTTGAGAGTTTTCATGCATTGTGAAGGTTGTGCTCGTAAAGTCCGCAAATCGCTCAAAGGATTCCAAG.........................................................................GAGTTGAAGATGTGTTGACGGATTGCAAAACTCACAAGGTTGTAGTGAAAGGGGAAAAAGCAGATCCGTTGAAGGTATTGGAGAGAATACAGAAAAAGAGTCATCGTCAAGTTGAGCTTCTCTCTCCAATCCCAAAACCACCGGCGGCGGCGGCGGCCGAAGAGCCCAAGAAACCGGGAGGAAAAAG-AGCCGTTAAAGCCGAAGAG-AAAAAGAGGAG.............................................................................................CCTCAGGTGATTACAGTAGTTCTGAAAGTTCACATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E705930" ref_strand="+" ref_description="SGN-E705930 [FA28CB08]">
      <seq>gctctttctcccttagatctgatgctccatcactagaccacttccccccttttccttttctccataaaaagagaagagagagaaaaacgaaacctgtaacagatacatttccatttctgtttaacaatgggagaggaagagaagaaggtagaagaagtgaagaaagaggaggcaccgaaagatgaaaagccaagtgacggcggcggcggtgaagagaagaaagaggaaaaaaaggcggaggaagaatcgaaagaggcgaaaccagaacctccaccaccaccaccacctgaaattgttttgagagttttcatgcattgtgaaggttgtgctcgtaaagtccgcaaatcgctcaaaggatttcaagatgtgttgacggactgcaaaactcataaggttgtggtgaaaggggaaaaagcagatccgttgaaggtattggagagaatacagaaaaagagtcatcgtcaagttgagcttctctcaccaatcccaaaaccaccggagccggcggctgaagaacctaagaaaccggaggaaaaagaagccgttaaacccgatgagaaaaaagaggagcctcaggtcattacagtagttctgaaagttcacatgcattgtgaggcttgtgcacaagaaatcaaaagacgtatacagaaaatgaaaggtgtggagaatgcagaaccggacttgaaaaactcacaggtgacagtgaaaggtgtgtttgaggcaacaaaactggtggaatatgttagcaaaaggactggaaaacgggcagttattgtgaaagtaaaaccctgaaagaaagcggaggaggaggcgaagcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0113N10.1" temp_strand="+" temp_description="C06SLm0113N10.1  AC219227.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0113N10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="105191" stop="107535"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105491" g_stop="105625" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="135" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105626" i_stop="105725" i_length="100">
            <donor d_prob="0.776" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105726" g_stop="105954" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="364" r_length="229" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105955" i_stop="106036" i_length="82">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106037" g_stop="106242" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="570" r_length="206" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106243" i_stop="106335" i_length="93">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106336" g_stop="106423" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="571" r_stop="658" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="106424" i_stop="107075" i_length="652">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="107076" g_stop="107235" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="659" r_stop="818" r_length="160" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0113N10.1" gen_strand="+" ref_id="SGN-E705930" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>818</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0113N10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E705930" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105491" e_stop="105625"/>
          <exon e_start="105726" e_stop="105954"/>
          <exon e_start="106037" e_stop="106242"/>
          <exon e_start="106336" e_stop="106423"/>
          <exon e_start="107076" e_stop="107235"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTCTTTCTCCCTTAGATCTGATGCTCCATCACTAGACCACTTCCCCCCTTTTCCTTTTCTCCATAAAAAGAGAAGAGAGAGAAAAACGAAACCTGTAACAGATACATTTCCATTTCTGTTTAACAATGGGAGAGGTCGATTTGCTTTCTGCTCGTTACTTTTTTCTTTTCTTTTTGGTTGTTGAGATTTTTGATTGATTTGGTTGTGTTGCTTATTAGTAATTTTTTTATTCAGGAAGAGAAGAAGGTAGAAGAAGTGAAGAAAGAGGAGGCACCGAAAGATGAAAAGCCAAGTGACGGCGGCGGCGGTGAAGAGAAGAAAGAGGAAAAAAAGGCGGAGGAAGAATCGAAAGAGGCGAAACCAGAACCTCCACCACCACCACCACCTGAAATTGTTTTGAGAGTTTTCATGCATTGTGAAGGTTGTGCTCGTAAAGTCCGCAAATCGCTCAAAGGATTTCAAGGTACTAATAAGGATTTTTTTTTTTTAAATTTGGATGATTGATATAAAAATAAATTGAATGATTTTGTTTATAGGAGTTGAAGATGTGTTGACGGACTGCAAAACTCATAAGGTTGTGGTGAAAGGGGAAAAAGCAGATCCGTTGAAGGTATTGGAGAGAATACAGAAAAAGAGTCATCGTCAAGTTGAGCTTCTCTCACCAATCCCAAAACCACCGGAGCCGGCGGCTGAAGAACCTAAGAAACCGGAGGAAAAAGAAGCCGTTAAACCCGATGAGAAAAAAGAGGAGGTATATTTATTTATTTTATTTATTTCTCTCACTTTATTTGTTTTTAATGTAAAAGTCATATATGCAAATGGTTTTCTATGTTTGTTTGTGCAGCCTCAGGTCATTACAGTAGTTCTGAAAGTTCACATGCATTGTGAGGCTTGTGCACAAGAAATCAAAAGACGTATACAGAAAATGAAAGGCAAGATTATTTAAAATTTTGGTTTTAATTTTAATTATTTTCATCTCTTTTTGCTTAATTAATTTACTACACCCTATTTTGCTTTCTGGTTTTGTGTTTGTTACACTTTTCAGCTGTATTTGTTGAAGAAAGTTTTTTTTTCTCCTTTTTGGATCTCTAAATTAGCATTGGATACTTGAGGATTCTATATTTTATATATCACCTTTCACTATCTAACATTTTTTATATTAGTCAGTAGGGAATAGAATATTCAATTCTTAATACGATTCTCTTAAAATTCTTCAATGTGTTAGTTTAATTCAAATCACATGTCTTCCAGTACTAAATATATTCACTTAATAAACTATTGATTTGAATCTTTGAAACCAATTTCTAGTATTGACTGTTAGGTTTCATCAAAAGTTGCAAGTAACTTAAGGAAATTAGTTGTGCATATGGAGTCTTCCACTACTAAATAGATTTTTTTTTTTGGATTTCGTTGTTTTTGTGTCTATTACTTCGAAAGTAGCTGCTTCAACTTCCCATCAAATTTTTGATATTCCTTTTTATTGATTGACATCTTCTTGAGGTATCCAATGCTAAAAACCTTAAAGTTTAGACTTATGGAGTTAAGATTCAAAATTCGTCTGACGTTAACTGTGCTTGAATTTAGGTGTGGAGAATGCAGAACCGGACTTGAAAAACTCACAGGTGACAGTGAAAGGTGTGTTTGAGGCAACAAAACTGGTGGAATATGTTAGCAAAAGGACTGGAAAACGGGCAGTTATTGTGAAAGTAGAACCTGAAAAGAAAGCGGAGGAGGAGGCGAAGCC</genome_strand>
        <mrna_strand>GCTCTTTCTCCCTTAGATCTGATGCTCCATCACTAGACCACTTCCCCCCTTTTCCTTTTCTCCATAAAAAGAGAAGAGAGAGAAAAACGAAACCTGTAACAGATACATTTCCATTTCTGTTTAACAATGGGAGAG....................................................................................................GAAGAGAAGAAGGTAGAAGAAGTGAAGAAAGAGGAGGCACCGAAAGATGAAAAGCCAAGTGACGGCGGCGGCGGTGAAGAGAAGAAAGAGGAAAAAAAGGCGGAGGAAGAATCGAAAGAGGCGAAACCAGAACCTCCACCACCACCACCACCTGAAATTGTTTTGAGAGTTTTCATGCATTGTGAAGGTTGTGCTCGTAAAGTCCGCAAATCGCTCAAAGGATTTCAAG..................................................................................ATGTGTTGACGGACTGCAAAACTCATAAGGTTGTGGTGAAAGGGGAAAAAGCAGATCCGTTGAAGGTATTGGAGAGAATACAGAAAAAGAGTCATCGTCAAGTTGAGCTTCTCTCACCAATCCCAAAACCACCGGAGCCGGCGGCTGAAGAACCTAAGAAACCGGAGGAAAAAGAAGCCGTTAAACCCGATGAGAAAAAAGAGGAG.............................................................................................CCTCAGGTCATTACAGTAGTTCTGAAAGTTCACATGCATTGTGAGGCTTGTGCACAAGAAATCAAAAGACGTATACAGAAAATGAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGGAGAATGCAGAACCGGACTTGAAAAACTCACAGGTGACAGTGAAAGGTGTGTTTGAGGCAACAAAACTGGTGGAATATGTTAGCAAAAGGACTGGAAAACGGGCAGTTATTGTGAAAGTAAAACCCTGAAAGAAAGCGGAGGAGGAGGCGAAGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E706020" ref_strand="+" ref_description="SGN-E706020 [FA28DB06]">
      <seq>gctctttctcccttagatctgatgctccatcactagaccacttccccccttttccttttctccataaaaagagaagagagagaaaaacgaaacctgtaacagatacatttccatttctgtttaacaatgggagaggaagagaagaaggtagaagaagtgaagaaagaggaggcaccgaaagatgaaaagccaagtgacggcggcggcggtgaagagaagaaagaggaaaaaaaggcggaggaagaatcgaaagaggcgaaaccagaacctccaccaccaccaccacctgaaattgttttgagagttttcatgcattgtgaaggttgtgctcgtaaagtccgcaaatcgctcaaaggatttcaagatgtgttgacggactgcaaaactcataaggttgtggtgaaaggggaaaaagcagatccgttgaaggtattggagagaatacagaaaaagagtcatcgtcaagttgagcttctctcaccaatcccaaaaccaccggagccggcggctgaagaacctaagaaaccggaggaaaaagaagccgttaaacccgatgagaaaaaagaggagcctcaggtcattacagtagttctgaaagttcacatgcattgtgaggcttgtgcacaagaaatcaaaagacgtatacagaaaatgaaaggtgtggagaatgcagaaccggacttgaaaaactcacaggtgacagtgaaaggtgtgtttgaggcaacaaaactggtggaatatgttagcaaaaggactggaaaacgggcagttattgtgaaagtagaacctgaaaagaaagcggaggagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0113N10.1" temp_strand="+" temp_description="C06SLm0113N10.1  AC219227.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0113N10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="105191" stop="107525"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105491" g_stop="105625" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="135" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105626" i_stop="105725" i_length="100">
            <donor d_prob="0.776" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105726" g_stop="105954" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="364" r_length="229" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105955" i_stop="106036" i_length="82">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106037" g_stop="106242" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="570" r_length="206" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106243" i_stop="106335" i_length="93">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106336" g_stop="106423" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="571" r_stop="658" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="106424" i_stop="107075" i_length="652">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="107076" g_stop="107225" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="659" r_stop="808" r_length="150" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0113N10.1" gen_strand="+" ref_id="SGN-E706020" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>808</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0113N10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E706020" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105491" e_stop="105625"/>
          <exon e_start="105726" e_stop="105954"/>
          <exon e_start="106037" e_stop="106242"/>
          <exon e_start="106336" e_stop="106423"/>
          <exon e_start="107076" e_stop="107225"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTCTTTCTCCCTTAGATCTGATGCTCCATCACTAGACCACTTCCCCCCTTTTCCTTTTCTCCATAAAAAGAGAAGAGAGAGAAAAACGAAACCTGTAACAGATACATTTCCATTTCTGTTTAACAATGGGAGAGGTCGATTTGCTTTCTGCTCGTTACTTTTTTCTTTTCTTTTTGGTTGTTGAGATTTTTGATTGATTTGGTTGTGTTGCTTATTAGTAATTTTTTTATTCAGGAAGAGAAGAAGGTAGAAGAAGTGAAGAAAGAGGAGGCACCGAAAGATGAAAAGCCAAGTGACGGCGGCGGCGGTGAAGAGAAGAAAGAGGAAAAAAAGGCGGAGGAAGAATCGAAAGAGGCGAAACCAGAACCTCCACCACCACCACCACCTGAAATTGTTTTGAGAGTTTTCATGCATTGTGAAGGTTGTGCTCGTAAAGTCCGCAAATCGCTCAAAGGATTTCAAGGTACTAATAAGGATTTTTTTTTTTTAAATTTGGATGATTGATATAAAAATAAATTGAATGATTTTGTTTATAGGAGTTGAAGATGTGTTGACGGACTGCAAAACTCATAAGGTTGTGGTGAAAGGGGAAAAAGCAGATCCGTTGAAGGTATTGGAGAGAATACAGAAAAAGAGTCATCGTCAAGTTGAGCTTCTCTCACCAATCCCAAAACCACCGGAGCCGGCGGCTGAAGAACCTAAGAAACCGGAGGAAAAAGAAGCCGTTAAACCCGATGAGAAAAAAGAGGAGGTATATTTATTTATTTTATTTATTTCTCTCACTTTATTTGTTTTTAATGTAAAAGTCATATATGCAAATGGTTTTCTATGTTTGTTTGTGCAGCCTCAGGTCATTACAGTAGTTCTGAAAGTTCACATGCATTGTGAGGCTTGTGCACAAGAAATCAAAAGACGTATACAGAAAATGAAAGGCAAGATTATTTAAAATTTTGGTTTTAATTTTAATTATTTTCATCTCTTTTTGCTTAATTAATTTACTACACCCTATTTTGCTTTCTGGTTTTGTGTTTGTTACACTTTTCAGCTGTATTTGTTGAAGAAAGTTTTTTTTTCTCCTTTTTGGATCTCTAAATTAGCATTGGATACTTGAGGATTCTATATTTTATATATCACCTTTCACTATCTAACATTTTTTATATTAGTCAGTAGGGAATAGAATATTCAATTCTTAATACGATTCTCTTAAAATTCTTCAATGTGTTAGTTTAATTCAAATCACATGTCTTCCAGTACTAAATATATTCACTTAATAAACTATTGATTTGAATCTTTGAAACCAATTTCTAGTATTGACTGTTAGGTTTCATCAAAAGTTGCAAGTAACTTAAGGAAATTAGTTGTGCATATGGAGTCTTCCACTACTAAATAGATTTTTTTTTTTGGATTTCGTTGTTTTTGTGTCTATTACTTCGAAAGTAGCTGCTTCAACTTCCCATCAAATTTTTGATATTCCTTTTTATTGATTGACATCTTCTTGAGGTATCCAATGCTAAAAACCTTAAAGTTTAGACTTATGGAGTTAAGATTCAAAATTCGTCTGACGTTAACTGTGCTTGAATTTAGGTGTGGAGAATGCAGAACCGGACTTGAAAAACTCACAGGTGACAGTGAAAGGTGTGTTTGAGGCAACAAAACTGGTGGAATATGTTAGCAAAAGGACTGGAAAACGGGCAGTTATTGTGAAAGTAGAACCTGAAAAGAAAGCGGAGGAGG</genome_strand>
        <mrna_strand>GCTCTTTCTCCCTTAGATCTGATGCTCCATCACTAGACCACTTCCCCCCTTTTCCTTTTCTCCATAAAAAGAGAAGAGAGAGAAAAACGAAACCTGTAACAGATACATTTCCATTTCTGTTTAACAATGGGAGAG....................................................................................................GAAGAGAAGAAGGTAGAAGAAGTGAAGAAAGAGGAGGCACCGAAAGATGAAAAGCCAAGTGACGGCGGCGGCGGTGAAGAGAAGAAAGAGGAAAAAAAGGCGGAGGAAGAATCGAAAGAGGCGAAACCAGAACCTCCACCACCACCACCACCTGAAATTGTTTTGAGAGTTTTCATGCATTGTGAAGGTTGTGCTCGTAAAGTCCGCAAATCGCTCAAAGGATTTCAAG..................................................................................ATGTGTTGACGGACTGCAAAACTCATAAGGTTGTGGTGAAAGGGGAAAAAGCAGATCCGTTGAAGGTATTGGAGAGAATACAGAAAAAGAGTCATCGTCAAGTTGAGCTTCTCTCACCAATCCCAAAACCACCGGAGCCGGCGGCTGAAGAACCTAAGAAACCGGAGGAAAAAGAAGCCGTTAAACCCGATGAGAAAAAAGAGGAG.............................................................................................CCTCAGGTCATTACAGTAGTTCTGAAAGTTCACATGCATTGTGAGGCTTGTGCACAAGAAATCAAAAGACGTATACAGAAAATGAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGGAGAATGCAGAACCGGACTTGAAAAACTCACAGGTGACAGTGAAAGGTGTGTTTGAGGCAACAAAACTGGTGGAATATGTTAGCAAAAGGACTGGAAAACGGGCAGTTATTGTGAAAGTAGAACCTGAAAAGAAAGCGGAGGAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E418177" ref_strand="+" ref_description="SGN-E418177 [STM-27-C9]">
      <seq>gctctttctcccttagatctgatgctccatcactagcctacttccccacactttttcttttctccataaaaagagaagagagagaaaaaaccaaacctgtaacagctacatttccatttctgtttaacaatgggagaggaagagaagaaggtagaagaagtgaagaaagaggaggcaccgaaagatgaaaagccaagcgacggcggtggtggtgaagagaagaaagaggaaaaaaaggcggaggaagaatcaaaagaggcgaaaccagaacctccacctccaccaccggaaattgttttgagagttttcatgcattgtgaaggttgtgctcgtaaagtccgcaaatcgctcaaaggattccaaggagttgaagatgtgttgacggattgcaaaactcacaaggttgtagtgaaaggggaaaaagcagatccgttgaaggtattggagagaatacagaaaaagagtcatcgtcaagttgagcttctctctccaatcccaaaaccaccggcggcggcggcggccgaagagcccaagaaaccggaggaaaaagaagccgttaaagccgaagagaaaaaagaggagcctcaggtgattacagtagttctgaaagttcacatgcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0113N10.1" temp_strand="+" temp_description="C06SLm0113N10.1  AC219227.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0113N10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="105191" stop="106675"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105491" g_stop="105625" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="138" r_length="138" r_score="0.919"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105626" i_stop="105725" i_length="100">
            <donor d_prob="0.776" d_score="0.92"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105726" g_stop="105954" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="364" r_length="226" r_score="0.956"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105955" i_stop="106027" i_length="73">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106028" g_stop="106242" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="582" r_length="218" r_score="0.926"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106243" i_stop="106335" i_length="93">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106336" g_stop="106375" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="583" r_stop="622" r_length="40" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0113N10.1" gen_strand="+" ref_id="SGN-E418177" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>619</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0113N10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E418177" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105491" e_stop="105625"/>
          <exon e_start="105726" e_stop="105954"/>
          <exon e_start="106028" e_stop="106242"/>
          <exon e_start="106336" e_stop="106375"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTCTTTCTCCCTTAGATCTGATGCTCCATCACTAGACCACTTCCCC-C-CTTTTCCTTTTCTCCATAAAAAGAGAAGAGAGAGAAAAA-CGAAACCTGTAACAGATACATTTCCATTTCTGTTTAACAATGGGAGAGGTCGATTTGCTTTCTGCTCGTTACTTTTTTCTTTTCTTTTTGGTTGTTGAGATTTTTGATTGATTTGGTTGTGTTGCTTATTAGTAATTTTTTTATTCAGGAAGAGAAGAAGGTAGAAGAAGTGAAGAAAGAGGAGGCACCGAAAGATGAAAAGCCAAGTGACGGCGGCGGCGGTGAAGAGAAGAAAGAGGAAAAAAAGGCGGAGGAAGAATCGAAAGAGGCGAAACCAGAACCTCCACCACCACCACCACCTGAAATTGTTTTGAGAGTTTTCATGCATTGTGAAGGTTGTGCTCGTAAAGTCCGCAAATCGCTCAAAGGATTTCAAGGTACTAATAAGGATTTTTTTTTTTTAAATTTGGATGATTGATATAAAAATAAATTGAATGATTTTGTTTATAGGAGTTGAAGATGTGTTGACGGACTGCAAAACTCATAAGGTTGTGGTGAAAGGGGAAAAAGCAGATCCGTTGAAGGTATTGGAGAGAATACAGAAAAAGAGTCATCGTCAAGTTGAGCTTCTCTCACCAATCCCAAAACCACCGG-AGC--CGGCGGCTGAAGAACCTAAGAAACCGGAGGAAAAAGAAGCCGTTAAACCCGATGAGAAAAAAGAGGAGGTATATTTATTTATTTTATTTATTTCTCTCACTTTATTTGTTTTTAATGTAAAAGTCATATATGCAAATGGTTTTCTATGTTTGTTTGTGCAGCCTCAGGTCATTACAGTAGTTCTGAAAGTTCACATGCATT</genome_strand>
        <mrna_strand>GCTCTTTCTCCCTTAGATCTGATGCTCCATCACTAGCCTACTTCCCCACACTTTTTCTTTTCTCCATAAAAAGAGAAGAGAGAGAAAAAACCAAACCTGTAACAGCTACATTTCCATTTCTGTTTAACAATGGGAGAG....................................................................................................GAAGAGAAGAAGGTAGAAGAAGTGAAGAAAGAGGAGGCACCGAAAGATGAAAAGCCAAGCGACGGCGGTGGTGGTGAAGAGAAGAAAGAGGAAAAAAAGGCGGAGGAAGAATCAAAAGAGGCGAAACCAGAACCT---CCACCTCCACCACCGGAAATTGTTTTGAGAGTTTTCATGCATTGTGAAGGTTGTGCTCGTAAAGTCCGCAAATCGCTCAAAGGATTCCAAG.........................................................................GAGTTGAAGATGTGTTGACGGATTGCAAAACTCACAAGGTTGTAGTGAAAGGGGAAAAAGCAGATCCGTTGAAGGTATTGGAGAGAATACAGAAAAAGAGTCATCGTCAAGTTGAGCTTCTCTCTCCAATCCCAAAACCACCGGCGGCGGCGGCGGCCGAAGAGCCCAAGAAACCGGAGGAAAAAGAAGCCGTTAAAGCCGAAGAGAAAAAAGAGGAG.............................................................................................CCTCAGGTGATTACAGTAGTTCTGAAAGTTCACATGCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E441117" ref_strand="+" ref_description="SGN-E441117 [cSTA-29-A4]">
      <seq>gctctttctcccttagatctgatgctccatcactagcctacttccccacactttttcttttctccataaaaagagaagagagagaaaaaaccaaacctgtaacagctacatttccatttctgtttaacaatgggagaggaagagaagaaggtagaagaagtgaagaaagaggaggcaccgaaagatgaaaagccaagcgacggcggtggtggtgaagagaagaaagaggaaaaaaaggcggaggaagaatcaaaagaggcgaaaccagaacctccaccttcaccaccggaaattgttttgagagttttcatgcattgtgaaggttgtgctcgtaaagtccgcaaatcgctcaaaggattccaaggagttgaagatgtgttgacggattgcaaaactcacaaggttgtagtgaaaggggaaaaagcagatccgctgaaggtattggagagaatacacaaaaagagtcatcgtctagttgagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0113N10.1" temp_strand="+" temp_description="C06SLm0113N10.1  AC219227.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0113N10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="105191" stop="106445"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105491" g_stop="105625" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="138" r_length="138" r_score="0.919"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105626" i_stop="105725" i_length="100">
            <donor d_prob="0.776" d_score="0.92"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105726" g_stop="105954" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="364" r_length="226" r_score="0.952"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105955" i_stop="106027" i_length="73">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106028" g_stop="106145" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="482" r_length="118" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0113N10.1" gen_strand="+" ref_id="SGN-E441117" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>482</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0113N10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E441117" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105491" e_stop="105625"/>
          <exon e_start="105726" e_stop="105954"/>
          <exon e_start="106028" e_stop="106145"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTCTTTCTCCCTTAGATCTGATGCTCCATCACTAGACCACTTCCCC-C-CTTTTCCTTTTCTCCATAAAAAGAGAAGAGAGAGAAAAA-CGAAACCTGTAACAGATACATTTCCATTTCTGTTTAACAATGGGAGAGGTCGATTTGCTTTCTGCTCGTTACTTTTTTCTTTTCTTTTTGGTTGTTGAGATTTTTGATTGATTTGGTTGTGTTGCTTATTAGTAATTTTTTTATTCAGGAAGAGAAGAAGGTAGAAGAAGTGAAGAAAGAGGAGGCACCGAAAGATGAAAAGCCAAGTGACGGCGGCGGCGGTGAAGAGAAGAAAGAGGAAAAAAAGGCGGAGGAAGAATCGAAAGAGGCGAAACCAGAACCTCCACCACCACCACCACCTGAAATTGTTTTGAGAGTTTTCATGCATTGTGAAGGTTGTGCTCGTAAAGTCCGCAAATCGCTCAAAGGATTTCAAGGTACTAATAAGGATTTTTTTTTTTTAAATTTGGATGATTGATATAAAAATAAATTGAATGATTTTGTTTATAGGAGTTGAAGATGTGTTGACGGACTGCAAAACTCATAAGGTTGTGGTGAAAGGGGAAAAAGCAGATCCGTTGAAGGTATTGGAGAGAATACAGAAAAAGAGTCATCGTCAAGTTGAGCT</genome_strand>
        <mrna_strand>GCTCTTTCTCCCTTAGATCTGATGCTCCATCACTAGCCTACTTCCCCACACTTTTTCTTTTCTCCATAAAAAGAGAAGAGAGAGAAAAAACCAAACCTGTAACAGCTACATTTCCATTTCTGTTTAACAATGGGAGAG....................................................................................................GAAGAGAAGAAGGTAGAAGAAGTGAAGAAAGAGGAGGCACCGAAAGATGAAAAGCCAAGCGACGGCGGTGGTGGTGAAGAGAAGAAAGAGGAAAAAAAGGCGGAGGAAGAATCAAAAGAGGCGAAACCAGAACCT---CCACCTTCACCACCGGAAATTGTTTTGAGAGTTTTCATGCATTGTGAAGGTTGTGCTCGTAAAGTCCGCAAATCGCTCAAAGGATTCCAAG.........................................................................GAGTTGAAGATGTGTTGACGGATTGCAAAACTCACAAGGTTGTAGTGAAAGGGGAAAAAGCAGATCCGCTGAAGGTATTGGAGAGAATACACAAAAAGAGTCATCGTCTAGTTGAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E441306" ref_strand="+" ref_description="SGN-E441306 [cSTA-29-P22]">
      <seq>gctctttctcccttagatctgatgctccatcactagcctacttccccacactttttcttttctccataaaaagagaagagagagaaaaaaccaaacctgtaacagctacatttccatttctgtttaacaatgggagaggaagagaagaaggtagaagaagtgaagaaagaggaggcaccgaaagatgaaaagccaagcgacggcggtggtggtgaagagaagaaagaggaaaaaaaggcggaggaagaatcaaaagaggcgaaaccagaacctccacctccaccaccggaaattgttttgagagttttcatgcattgtgaaggttgtgctcgtaaagtccgcaaatcgctcaaaggattccaaggagttgaagatgtgttgacggattgcaaaactcacaacgttgtagtgaaaggggaaaaagcaaatccgttgaaggtattggagagaatacagaaaaagagtcatcgtcaagttgagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0113N10.1" temp_strand="+" temp_description="C06SLm0113N10.1  AC219227.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0113N10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="105191" stop="106444"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105491" g_stop="105625" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="138" r_length="138" r_score="0.919"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105626" i_stop="105725" i_length="100">
            <donor d_prob="0.776" d_score="0.92"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105726" g_stop="105954" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="364" r_length="226" r_score="0.956"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105955" i_stop="106027" i_length="73">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106028" g_stop="106144" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="481" r_length="117" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0113N10.1" gen_strand="+" ref_id="SGN-E441306" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>481</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0113N10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E441306" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105491" e_stop="105625"/>
          <exon e_start="105726" e_stop="105954"/>
          <exon e_start="106028" e_stop="106144"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTCTTTCTCCCTTAGATCTGATGCTCCATCACTAGACCACTTCCCC-C-CTTTTCCTTTTCTCCATAAAAAGAGAAGAGAGAGAAAAA-CGAAACCTGTAACAGATACATTTCCATTTCTGTTTAACAATGGGAGAGGTCGATTTGCTTTCTGCTCGTTACTTTTTTCTTTTCTTTTTGGTTGTTGAGATTTTTGATTGATTTGGTTGTGTTGCTTATTAGTAATTTTTTTATTCAGGAAGAGAAGAAGGTAGAAGAAGTGAAGAAAGAGGAGGCACCGAAAGATGAAAAGCCAAGTGACGGCGGCGGCGGTGAAGAGAAGAAAGAGGAAAAAAAGGCGGAGGAAGAATCGAAAGAGGCGAAACCAGAACCTCCACCACCACCACCACCTGAAATTGTTTTGAGAGTTTTCATGCATTGTGAAGGTTGTGCTCGTAAAGTCCGCAAATCGCTCAAAGGATTTCAAGGTACTAATAAGGATTTTTTTTTTTTAAATTTGGATGATTGATATAAAAATAAATTGAATGATTTTGTTTATAGGAGTTGAAGATGTGTTGACGGACTGCAAAACTCATAAGGTTGTGGTGAAAGGGGAAAAAGCAGATCCGTTGAAGGTATTGGAGAGAATACAGAAAAAGAGTCATCGTCAAGTTGAGC</genome_strand>
        <mrna_strand>GCTCTTTCTCCCTTAGATCTGATGCTCCATCACTAGCCTACTTCCCCACACTTTTTCTTTTCTCCATAAAAAGAGAAGAGAGAGAAAAAACCAAACCTGTAACAGCTACATTTCCATTTCTGTTTAACAATGGGAGAG....................................................................................................GAAGAGAAGAAGGTAGAAGAAGTGAAGAAAGAGGAGGCACCGAAAGATGAAAAGCCAAGCGACGGCGGTGGTGGTGAAGAGAAGAAAGAGGAAAAAAAGGCGGAGGAAGAATCAAAAGAGGCGAAACCAGAACCT---CCACCTCCACCACCGGAAATTGTTTTGAGAGTTTTCATGCATTGTGAAGGTTGTGCTCGTAAAGTCCGCAAATCGCTCAAAGGATTCCAAG.........................................................................GAGTTGAAGATGTGTTGACGGATTGCAAAACTCACAACGTTGTAGTGAAAGGGGAAAAAGCAAATCCGTTGAAGGTATTGGAGAGAATACAGAAAAAGAGTCATCGTCAAGTTGAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E456457" ref_strand="+" ref_description="SGN-E456457 [cSTS-29-H17]">
      <seq>ctctttctcccttagatctgatgctccatcactagcctacttccccactttttcttttctccataaaaagagaagagagagaaaaaaccaaacctgtaacagctacatttccatttctgtttaacaatgggagaaggaagagaagaaggtagaagaagtgaagaaagaggaggcaccgaaagatgaaaagccaagcgacggcggtggtggtgaagagaagaaagagggaaaaaaggcggaggaagaatcaaaagaggcaaaacctgaacctccaccaccaccaccggaaattgttttgagagttttcatgcattgtgaaggttgtgctcgtaaagtccgcaaatcgctcaaaggattccaaggagttgaagatgtgttgacggattgcaaaactcataaggttgtagtgaaaggggaaaaagcagatccgttgaaggtattggagagaatacagaaaaagagtcatcgtcaagttgagcttctctctccaatcccaaaaccaccggcggcggcggcggccgaagagcccaagaaaccggaggaaaaagaagccgttaaagccgaagagaaaaaagaggagcctcaggtgattacagtagttctgaaagttcacatgcattgtgaggcttgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0113N10.1" temp_strand="+" temp_description="C06SLm0113N10.1  AC219227.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0113N10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="105192" stop="106687"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105492" g_stop="105625" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="136" r_length="136" r_score="0.925"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105626" i_stop="105725" i_length="100">
            <donor d_prob="0.776" d_score="0.92"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105726" g_stop="105954" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="362" r_length="226" r_score="0.948"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105955" i_stop="106027" i_length="73">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106028" g_stop="106242" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="580" r_length="218" r_score="0.930"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106243" i_stop="106335" i_length="93">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106336" g_stop="106387" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="581" r_stop="632" r_length="52" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0113N10.1" gen_strand="+" ref_id="SGN-E456457" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>630</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0113N10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E456457" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105492" e_stop="105625"/>
          <exon e_start="105726" e_stop="105954"/>
          <exon e_start="106028" e_stop="106242"/>
          <exon e_start="106336" e_stop="106387"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTTCTCCCTTAGATCTGATGCTCCATCACTAGACCACTTCCCCCCTTTTCCTTTTCTCCATAAAAAGAGAAGAGAGAGA-AAAACGAAACCTGTAACAGATACATTTCCATTTCTGTTTAACAATGGGAG-AGGTCGATTTGCTTTCTGCTCGTTACTTTTTTCTTTTCTTTTTGGTTGTTGAGATTTTTGATTGATTTGGTTGTGTTGCTTATTAGTAATTTTTTTATTCAGGAAGAGAAGAAGGTAGAAGAAGTGAAGAAAGAGGAGGCACCGAAAGATGAAAAGCCAAGTGACGGCGGCGGCGGTGAAGAGAAGAAAGAGGAAAAAAAGGCGGAGGAAGAATCGAAAGAGGCGAAACCAGAACCTCCACCACCACCACCACCTGAAATTGTTTTGAGAGTTTTCATGCATTGTGAAGGTTGTGCTCGTAAAGTCCGCAAATCGCTCAAAGGATTTCAAGGTACTAATAAGGATTTTTTTTTTTTAAATTTGGATGATTGATATAAAAATAAATTGAATGATTTTGTTTATAGGAGTTGAAGATGTGTTGACGGACTGCAAAACTCATAAGGTTGTGGTGAAAGGGGAAAAAGCAGATCCGTTGAAGGTATTGGAGAGAATACAGAAAAAGAGTCATCGTCAAGTTGAGCTTCTCTCACCAATCCCAAAACCACCGG-AGC--CGGCGGCTGAAGAACCTAAGAAACCGGAGGAAAAAGAAGCCGTTAAACCCGATGAGAAAAAAGAGGAGGTATATTTATTTATTTTATTTATTTCTCTCACTTTATTTGTTTTTAATGTAAAAGTCATATATGCAAATGGTTTTCTATGTTTGTTTGTGCAGCCTCAGGTCATTACAGTAGTTCTGAAAGTTCACATGCATTGTGAGGCTTGTG</genome_strand>
        <mrna_strand>CTCTTTCTCCCTTAGATCTGATGCTCCATCACTAGCCTACTTCCCCACTTTTTCTTTTCTCCATAAAAAGAGAAGAGAGAGAAAAAACCAAACCTGTAACAGCTACATTTCCATTTCTGTTTAACAATGGGAGAAG....................................................................................................GAAGAGAAGAAGGTAGAAGAAGTGAAGAAAGAGGAGGCACCGAAAGATGAAAAGCCAAGCGACGGCGGTGGTGGTGAAGAGAAGAAAGAGGGAAAAAAGGCGGAGGAAGAATCAAAAGAGGCAAAACCTGAACCT---CCACCACCACCACCGGAAATTGTTTTGAGAGTTTTCATGCATTGTGAAGGTTGTGCTCGTAAAGTCCGCAAATCGCTCAAAGGATTCCAAG.........................................................................GAGTTGAAGATGTGTTGACGGATTGCAAAACTCATAAGGTTGTAGTGAAAGGGGAAAAAGCAGATCCGTTGAAGGTATTGGAGAGAATACAGAAAAAGAGTCATCGTCAAGTTGAGCTTCTCTCTCCAATCCCAAAACCACCGGCGGCGGCGGCGGCCGAAGAGCCCAAGAAACCGGAGGAAAAAGAAGCCGTTAAAGCCGAAGAGAAAAAAGAGGAG.............................................................................................CCTCAGGTGATTACAGTAGTTCTGAAAGTTCACATGCATTGTGAGGCTTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E455295" ref_strand="+" ref_description="SGN-E455295 [cSTS-25-L10]">
      <seq>ctctttctcccttagatctgatgctccatcactagcctacttccccacactttttcttttctccataaaaagagaagagagagaaaaaaccaaacctgtaacagctacatttccatttctgtttaacaatgggagaggaagagaagaaggtagaagaagtgaagaaagaggaggcaccgaaagatgaaaagccaagcgacggcggtggtggtgaagagaagaaagaggaaaaaaaggcggaggaagaatcaaaagaggcgaaaccagaacctccacctccaccaccggaaattgttttgagagttttcatgcattgtgaaggttgtgctcgtaaagtccgcaaatcgctcaaaggattccaaggagttgaagatgtgttgacggattgcaaaactcacaaggttgtagtgaaaggggaaaaagcagatccgttgaaggtattggagagaatacagaaaaagagtcatcgtcaagttgagcttctctctccaatcccaaaaccaccggcggcggcggcggccgaagagcccaagaaaccggaggaaaaagaagccgttaaagccgaagagaaaaaagaggagcctcaggtgattacagtagttctgaaagttcacatgcattgtgaggctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0113N10.1" temp_strand="+" temp_description="C06SLm0113N10.1  AC219227.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0113N10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="105192" stop="106684"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105492" g_stop="105625" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="137" r_length="137" r_score="0.918"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105626" i_stop="105725" i_length="100">
            <donor d_prob="0.776" d_score="0.92"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105726" g_stop="105954" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="363" r_length="226" r_score="0.956"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105955" i_stop="106027" i_length="73">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106028" g_stop="106242" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="581" r_length="218" r_score="0.926"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106243" i_stop="106335" i_length="93">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106336" g_stop="106384" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="582" r_stop="630" r_length="49" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0113N10.1" gen_strand="+" ref_id="SGN-E455295" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>627</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0113N10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E455295" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105492" e_stop="105625"/>
          <exon e_start="105726" e_stop="105954"/>
          <exon e_start="106028" e_stop="106242"/>
          <exon e_start="106336" e_stop="106384"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTTCTCCCTTAGATCTGATGCTCCATCACTAGACCACTTCCCC-C-CTTTTCCTTTTCTCCATAAAAAGAGAAGAGAGAGAAAAA-CGAAACCTGTAACAGATACATTTCCATTTCTGTTTAACAATGGGAGAGGTCGATTTGCTTTCTGCTCGTTACTTTTTTCTTTTCTTTTTGGTTGTTGAGATTTTTGATTGATTTGGTTGTGTTGCTTATTAGTAATTTTTTTATTCAGGAAGAGAAGAAGGTAGAAGAAGTGAAGAAAGAGGAGGCACCGAAAGATGAAAAGCCAAGTGACGGCGGCGGCGGTGAAGAGAAGAAAGAGGAAAAAAAGGCGGAGGAAGAATCGAAAGAGGCGAAACCAGAACCTCCACCACCACCACCACCTGAAATTGTTTTGAGAGTTTTCATGCATTGTGAAGGTTGTGCTCGTAAAGTCCGCAAATCGCTCAAAGGATTTCAAGGTACTAATAAGGATTTTTTTTTTTTAAATTTGGATGATTGATATAAAAATAAATTGAATGATTTTGTTTATAGGAGTTGAAGATGTGTTGACGGACTGCAAAACTCATAAGGTTGTGGTGAAAGGGGAAAAAGCAGATCCGTTGAAGGTATTGGAGAGAATACAGAAAAAGAGTCATCGTCAAGTTGAGCTTCTCTCACCAATCCCAAAACCACCGG-AGC--CGGCGGCTGAAGAACCTAAGAAACCGGAGGAAAAAGAAGCCGTTAAACCCGATGAGAAAAAAGAGGAGGTATATTTATTTATTTTATTTATTTCTCTCACTTTATTTGTTTTTAATGTAAAAGTCATATATGCAAATGGTTTTCTATGTTTGTTTGTGCAGCCTCAGGTCATTACAGTAGTTCTGAAAGTTCACATGCATTGTGAGGCTT</genome_strand>
        <mrna_strand>CTCTTTCTCCCTTAGATCTGATGCTCCATCACTAGCCTACTTCCCCACACTTTTTCTTTTCTCCATAAAAAGAGAAGAGAGAGAAAAAACCAAACCTGTAACAGCTACATTTCCATTTCTGTTTAACAATGGGAGAG....................................................................................................GAAGAGAAGAAGGTAGAAGAAGTGAAGAAAGAGGAGGCACCGAAAGATGAAAAGCCAAGCGACGGCGGTGGTGGTGAAGAGAAGAAAGAGGAAAAAAAGGCGGAGGAAGAATCAAAAGAGGCGAAACCAGAACCT---CCACCTCCACCACCGGAAATTGTTTTGAGAGTTTTCATGCATTGTGAAGGTTGTGCTCGTAAAGTCCGCAAATCGCTCAAAGGATTCCAAG.........................................................................GAGTTGAAGATGTGTTGACGGATTGCAAAACTCACAAGGTTGTAGTGAAAGGGGAAAAAGCAGATCCGTTGAAGGTATTGGAGAGAATACAGAAAAAGAGTCATCGTCAAGTTGAGCTTCTCTCTCCAATCCCAAAACCACCGGCGGCGGCGGCGGCCGAAGAGCCCAAGAAACCGGAGGAAAAAGAAGCCGTTAAAGCCGAAGAGAAAAAAGAGGAG.............................................................................................CCTCAGGTGATTACAGTAGTTCTGAAAGTTCACATGCATTGTGAGGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E456294" ref_strand="+" ref_description="SGN-E456294 [cSTS-29-I7]">
      <seq>tttctcccttagatctgatgctccatcactagcctacttccccacactttttcttttctccataaaaagagaagagagagaaaaaaccaaacctgtaacagctacatttccatttctgtttaacaatgggagaggaagagaagaaggtagaagaagtgaagaaagaggaggcaccgaaagatgaaaagccaagcgacggcggtggtggtgaagagaagaaagaggaaaaaaaggcggaggaagaatcaaaagaggcgaaaccagaacctccacctccaccaccggaaattgttttgagagttttcatgcattgtgaaggttgtgctcgtaaagtccgcaaatcgctcaaaggattccaaggagttgaagatgtgttgacggattgcaaaactcacaaggttgtagtgaaaggggaaaaagcagatccgttgaaggtattggagagaatacagaaaaagagtcatcgtcaagttgagcttctctctccaatcccaaaaccaccggcggcggcggcggccgaagagcccaagaaaccggaggaaaaagaagccgttaaagccgaagagaaaaaagaggagcctcaggtgattacagtagttctgaaagttcacatgcattgtgaggcttgtgcacaagaaatcaaaagacgtatacagaaaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0113N10.1" temp_strand="+" temp_description="C06SLm0113N10.1  AC219227.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0113N10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="105195" stop="106719"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105495" g_stop="105625" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="134" r_length="134" r_score="0.916"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105626" i_stop="105725" i_length="100">
            <donor d_prob="0.776" d_score="0.96"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105726" g_stop="105954" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="360" r_length="226" r_score="0.956"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105955" i_stop="106027" i_length="73">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106028" g_stop="106242" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="578" r_length="218" r_score="0.926"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106243" i_stop="106335" i_length="93">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106336" g_stop="106419" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="579" r_stop="662" r_length="84" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0113N10.1" gen_strand="+" ref_id="SGN-E456294" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0113N10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E456294" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105495" e_stop="105625"/>
          <exon e_start="105726" e_stop="105954"/>
          <exon e_start="106028" e_stop="106242"/>
          <exon e_start="106336" e_stop="106419"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTCCCTTAGATCTGATGCTCCATCACTAGACCACTTCCCC-C-CTTTTCCTTTTCTCCATAAAAAGAGAAGAGAGAG-AAAAACGAAACCTGTAACAGATACATTTCCATTTCTGTTTAACAATGGGAGAGGTCGATTTGCTTTCTGCTCGTTACTTTTTTCTTTTCTTTTTGGTTGTTGAGATTTTTGATTGATTTGGTTGTGTTGCTTATTAGTAATTTTTTTATTCAGGAAGAGAAGAAGGTAGAAGAAGTGAAGAAAGAGGAGGCACCGAAAGATGAAAAGCCAAGTGACGGCGGCGGCGGTGAAGAGAAGAAAGAGGAAAAAAAGGCGGAGGAAGAATCGAAAGAGGCGAAACCAGAACCTCCACCACCACCACCACCTGAAATTGTTTTGAGAGTTTTCATGCATTGTGAAGGTTGTGCTCGTAAAGTCCGCAAATCGCTCAAAGGATTTCAAGGTACTAATAAGGATTTTTTTTTTTTAAATTTGGATGATTGATATAAAAATAAATTGAATGATTTTGTTTATAGGAGTTGAAGATGTGTTGACGGACTGCAAAACTCATAAGGTTGTGGTGAAAGGGGAAAAAGCAGATCCGTTGAAGGTATTGGAGAGAATACAGAAAAAGAGTCATCGTCAAGTTGAGCTTCTCTCACCAATCCCAAAACCACCGG-AGC--CGGCGGCTGAAGAACCTAAGAAACCGGAGGAAAAAGAAGCCGTTAAACCCGATGAGAAAAAAGAGGAGGTATATTTATTTATTTTATTTATTTCTCTCACTTTATTTGTTTTTAATGTAAAAGTCATATATGCAAATGGTTTTCTATGTTTGTTTGTGCAGCCTCAGGTCATTACAGTAGTTCTGAAAGTTCACATGCATTGTGAGGCTTGTGCACAAGAAATCAAAAGACGTATACAGAAAATG</genome_strand>
        <mrna_strand>TTTCTCCCTTAGATCTGATGCTCCATCACTAGCCTACTTCCCCACACTTTTTCTTTTCTCCATAAAAAGAGAAGAGAGAGAAAAAACCAAACCTGTAACAGCTACATTTCCATTTCTGTTTAACAATGGGAGAG....................................................................................................GAAGAGAAGAAGGTAGAAGAAGTGAAGAAAGAGGAGGCACCGAAAGATGAAAAGCCAAGCGACGGCGGTGGTGGTGAAGAGAAGAAAGAGGAAAAAAAGGCGGAGGAAGAATCAAAAGAGGCGAAACCAGAACCT---CCACCTCCACCACCGGAAATTGTTTTGAGAGTTTTCATGCATTGTGAAGGTTGTGCTCGTAAAGTCCGCAAATCGCTCAAAGGATTCCAAG.........................................................................GAGTTGAAGATGTGTTGACGGATTGCAAAACTCACAAGGTTGTAGTGAAAGGGGAAAAAGCAGATCCGTTGAAGGTATTGGAGAGAATACAGAAAAAGAGTCATCGTCAAGTTGAGCTTCTCTCTCCAATCCCAAAACCACCGGCGGCGGCGGCGGCCGAAGAGCCCAAGAAACCGGAGGAAAAAGAAGCCGTTAAAGCCGAAGAGAAAAAAGAGGAG.............................................................................................CCTCAGGTGATTACAGTAGTTCTGAAAGTTCACATGCATTGTGAGGCTTGTGCACAAGAAATCAAAAGACGTATACAGAAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E701459" ref_strand="+" ref_description="SGN-E701459 [FA16AB08]">
      <seq>ctccatcactagaccacttccccccttttccttttctccataaaaagagaagagagagaaaaacgaaacctgtaacagatacatttccatttctgtttaacaatgggagaggaagagaagaaggtagaagaagtgaagaaagaggaggcaccgaaagatgaaaagccaagtgacggcggcggcggtgaagagaagaaagaggaaaaaaaggcggaggaagaatcgaaagaggcgaaaccagaacctccaccaccaccaccacctgaaattgttttgagagttttcatgcattgtgaaggttgtgctcgtaaagtccgcaaatcgctcaaaggatttcaaggagttgaagatgtgttgacggactgcaaaactcataaggttgtggtgaaaggggaaaaagcagatccgttgaaggtattggagagaatacagaaaaagagtcatcgtcaagttgagcttctctcaccaatcccaaaaccaccggagccggcggctgaagaacctaagaaaccggaggaaaaagaagccgttaaacccgatgagaaaaaagaggagcctcaggtcattacagtagttctgaaagttcacatgcattgtgaggcttgtgcacaagaaatcaaaagacgtatacagaaaatgaaaggtgtggagaatgcagaaccggacttgaaaaactcacaggtgacagtgaaaggtgtgtttgaggcaacaaaactggtggaatatgttagcaaaaggactggaaaacgggcagttattgtgaaagtagaacctgaaaagaaagcggaggaggaggcgaagccccaggaagatcaaaaggaagagaagaaaaccgatgaaaaagaagcgaaaaaagttgaaggtgacga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0113N10.1" temp_strand="+" temp_description="C06SLm0113N10.1  AC219227.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0113N10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="105215" stop="107601"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105515" g_stop="105625" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="111" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105626" i_stop="105725" i_length="100">
            <donor d_prob="0.776" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105726" g_stop="105954" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="340" r_length="229" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105955" i_stop="106027" i_length="73">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106028" g_stop="106242" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="555" r_length="215" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106243" i_stop="106335" i_length="93">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106336" g_stop="106423" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="556" r_stop="643" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="106424" i_stop="107075" i_length="652">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="107076" g_stop="107301" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="644" r_stop="869" r_length="226" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0113N10.1" gen_strand="+" ref_id="SGN-E701459" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>869</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0113N10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E701459" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105515" e_stop="105625"/>
          <exon e_start="105726" e_stop="105954"/>
          <exon e_start="106028" e_stop="106242"/>
          <exon e_start="106336" e_stop="106423"/>
          <exon e_start="107076" e_stop="107301"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCATCACTAGACCACTTCCCCCCTTTTCCTTTTCTCCATAAAAAGAGAAGAGAGAGAAAAACGAAACCTGTAACAGATACATTTCCATTTCTGTTTAACAATGGGAGAGGTCGATTTGCTTTCTGCTCGTTACTTTTTTCTTTTCTTTTTGGTTGTTGAGATTTTTGATTGATTTGGTTGTGTTGCTTATTAGTAATTTTTTTATTCAGGAAGAGAAGAAGGTAGAAGAAGTGAAGAAAGAGGAGGCACCGAAAGATGAAAAGCCAAGTGACGGCGGCGGCGGTGAAGAGAAGAAAGAGGAAAAAAAGGCGGAGGAAGAATCGAAAGAGGCGAAACCAGAACCTCCACCACCACCACCACCTGAAATTGTTTTGAGAGTTTTCATGCATTGTGAAGGTTGTGCTCGTAAAGTCCGCAAATCGCTCAAAGGATTTCAAGGTACTAATAAGGATTTTTTTTTTTTAAATTTGGATGATTGATATAAAAATAAATTGAATGATTTTGTTTATAGGAGTTGAAGATGTGTTGACGGACTGCAAAACTCATAAGGTTGTGGTGAAAGGGGAAAAAGCAGATCCGTTGAAGGTATTGGAGAGAATACAGAAAAAGAGTCATCGTCAAGTTGAGCTTCTCTCACCAATCCCAAAACCACCGGAGCCGGCGGCTGAAGAACCTAAGAAACCGGAGGAAAAAGAAGCCGTTAAACCCGATGAGAAAAAAGAGGAGGTATATTTATTTATTTTATTTATTTCTCTCACTTTATTTGTTTTTAATGTAAAAGTCATATATGCAAATGGTTTTCTATGTTTGTTTGTGCAGCCTCAGGTCATTACAGTAGTTCTGAAAGTTCACATGCATTGTGAGGCTTGTGCACAAGAAATCAAAAGACGTATACAGAAAATGAAAGGCAAGATTATTTAAAATTTTGGTTTTAATTTTAATTATTTTCATCTCTTTTTGCTTAATTAATTTACTACACCCTATTTTGCTTTCTGGTTTTGTGTTTGTTACACTTTTCAGCTGTATTTGTTGAAGAAAGTTTTTTTTTCTCCTTTTTGGATCTCTAAATTAGCATTGGATACTTGAGGATTCTATATTTTATATATCACCTTTCACTATCTAACATTTTTTATATTAGTCAGTAGGGAATAGAATATTCAATTCTTAATACGATTCTCTTAAAATTCTTCAATGTGTTAGTTTAATTCAAATCACATGTCTTCCAGTACTAAATATATTCACTTAATAAACTATTGATTTGAATCTTTGAAACCAATTTCTAGTATTGACTGTTAGGTTTCATCAAAAGTTGCAAGTAACTTAAGGAAATTAGTTGTGCATATGGAGTCTTCCACTACTAAATAGATTTTTTTTTTTGGATTTCGTTGTTTTTGTGTCTATTACTTCGAAAGTAGCTGCTTCAACTTCCCATCAAATTTTTGATATTCCTTTTTATTGATTGACATCTTCTTGAGGTATCCAATGCTAAAAACCTTAAAGTTTAGACTTATGGAGTTAAGATTCAAAATTCGTCTGACGTTAACTGTGCTTGAATTTAGGTGTGGAGAATGCAGAACCGGACTTGAAAAACTCACAGGTGACAGTGAAAGGTGTGTTTGAGGCAACAAAACTGGTGGAATATGTTAGCAAAAGGACTGGAAAACGGGCAGTTATTGTGAAAGTAGAACCTGAAAAGAAAGCGGAGGAGGAGGCGAAGCCCAAGGAAGATCAAAAGGAAGAGAAGAAAACCGATGAAAAAGAAGCGAAGAAAGTTGAAGGTGACGA</genome_strand>
        <mrna_strand>CTCCATCACTAGACCACTTCCCCCCTTTTCCTTTTCTCCATAAAAAGAGAAGAGAGAGAAAAACGAAACCTGTAACAGATACATTTCCATTTCTGTTTAACAATGGGAGAG....................................................................................................GAAGAGAAGAAGGTAGAAGAAGTGAAGAAAGAGGAGGCACCGAAAGATGAAAAGCCAAGTGACGGCGGCGGCGGTGAAGAGAAGAAAGAGGAAAAAAAGGCGGAGGAAGAATCGAAAGAGGCGAAACCAGAACCTCCACCACCACCACCACCTGAAATTGTTTTGAGAGTTTTCATGCATTGTGAAGGTTGTGCTCGTAAAGTCCGCAAATCGCTCAAAGGATTTCAAG.........................................................................GAGTTGAAGATGTGTTGACGGACTGCAAAACTCATAAGGTTGTGGTGAAAGGGGAAAAAGCAGATCCGTTGAAGGTATTGGAGAGAATACAGAAAAAGAGTCATCGTCAAGTTGAGCTTCTCTCACCAATCCCAAAACCACCGGAGCCGGCGGCTGAAGAACCTAAGAAACCGGAGGAAAAAGAAGCCGTTAAACCCGATGAGAAAAAAGAGGAG.............................................................................................CCTCAGGTCATTACAGTAGTTCTGAAAGTTCACATGCATTGTGAGGCTTGTGCACAAGAAATCAAAAGACGTATACAGAAAATGAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGGAGAATGCAGAACCGGACTTGAAAAACTCACAGGTGACAGTGAAAGGTGTGTTTGAGGCAACAAAACTGGTGGAATATGTTAGCAAAAGGACTGGAAAACGGGCAGTTATTGTGAAAGTAGAACCTGAAAAGAAAGCGGAGGAGGAGGCGAAGCCCCAGGAAGATCAAAAGGAAGAGAAGAAAACCGATGAAAAAGAAGCGAAAAAAGTTGAAGGTGACGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E564037" ref_strand="+" ref_description="SGN-E564037 [3451]">
      <seq>cccactttttcttttctccctataaagagaagagagagaaaaaaccaaacctgtaacagctacatttccatttctgtttaacaatgggagaggaagagaagaaggtagaagaagtgaagaaagaggaggcaccgaaagatgaaaagccaagcgacggcggtggtggtgaagagaagaaagaggaaaaaaaggcggaggaagaatcaaaagaggcgaaaccagaacctccacctccaccaccggaaattgttttgagagttttcatgcattgtgaaggttgtgctcgtaaagtccgcaaatcgctcaaaggattccaaggagttgaagatgtgttgacggattgcaaaactcacaaggttgtagtgaaaggggaaaaagcagatccgttgaaggtattggagagaatacagaaaaagagtcatcgtcaagttgagcttctctctccaatcccaaaaccaccggcggcggcggcggacgaagagcccaagaaaacggaggaaaaagaagccgttaaagccgaagagaaaaaagaggagcctcaggtgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0113N10.1" temp_strand="+" temp_description="C06SLm0113N10.1  AC219227.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0113N10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="105236" stop="106542"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105535" g_stop="105625" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="92" r_length="92" r_score="0.912"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105626" i_stop="105725" i_length="100">
            <donor d_prob="0.776" d_score="0.96"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105726" g_stop="105954" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="318" r_length="226" r_score="0.956"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105955" i_stop="106027" i_length="73">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106028" g_stop="106242" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="536" r_length="218" r_score="0.916"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106243" i_stop="106335" i_length="93">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.994" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106336" g_stop="106346" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="537" r_stop="547" r_length="11" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0113N10.1" gen_strand="+" ref_id="SGN-E564037" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0113N10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E564037" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105535" e_stop="105625"/>
          <exon e_start="105726" e_stop="105954"/>
          <exon e_start="106028" e_stop="106242"/>
          <exon e_start="106336" e_stop="106346"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCCCTTTTCCTTTTCTCCATAAAAAGAGAAGAGAGAG-AAAAACGAAACCTGTAACAGATACATTTCCATTTCTGTTTAACAATGGGAGAGGTCGATTTGCTTTCTGCTCGTTACTTTTTTCTTTTCTTTTTGGTTGTTGAGATTTTTGATTGATTTGGTTGTGTTGCTTATTAGTAATTTTTTTATTCAGGAAGAGAAGAAGGTAGAAGAAGTGAAGAAAGAGGAGGCACCGAAAGATGAAAAGCCAAGTGACGGCGGCGGCGGTGAAGAGAAGAAAGAGGAAAAAAAGGCGGAGGAAGAATCGAAAGAGGCGAAACCAGAACCTCCACCACCACCACCACCTGAAATTGTTTTGAGAGTTTTCATGCATTGTGAAGGTTGTGCTCGTAAAGTCCGCAAATCGCTCAAAGGATTTCAAGGTACTAATAAGGATTTTTTTTTTTTAAATTTGGATGATTGATATAAAAATAAATTGAATGATTTTGTTTATAGGAGTTGAAGATGTGTTGACGGACTGCAAAACTCATAAGGTTGTGGTGAAAGGGGAAAAAGCAGATCCGTTGAAGGTATTGGAGAGAATACAGAAAAAGAGTCATCGTCAAGTTGAGCTTCTCTCACCAATCCCAAAACCACCGGAGCCGGCGGC---TGAAGAACCTAAGAAACCGGAGGAAAAAGAAGCCGTTAAACCCGATGAGAAAAAAGAGGAGGTATATTTATTTATTTTATTTATTTCTCTCACTTTATTTGTTTTTAATGTAAAAGTCATATATGCAAATGGTTTTCTATGTTTGTTTGTGCAGCCTCAGGTCAT</genome_strand>
        <mrna_strand>CCCACTTTTTCTTTTCTCCCTATAAAGAGAAGAGAGAGAAAAAACCAAACCTGTAACAGCTACATTTCCATTTCTGTTTAACAATGGGAGAG....................................................................................................GAAGAGAAGAAGGTAGAAGAAGTGAAGAAAGAGGAGGCACCGAAAGATGAAAAGCCAAGCGACGGCGGTGGTGGTGAAGAGAAGAAAGAGGAAAAAAAGGCGGAGGAAGAATCAAAAGAGGCGAAACCAGAACCT---CCACCTCCACCACCGGAAATTGTTTTGAGAGTTTTCATGCATTGTGAAGGTTGTGCTCGTAAAGTCCGCAAATCGCTCAAAGGATTCCAAG.........................................................................GAGTTGAAGATGTGTTGACGGATTGCAAAACTCACAAGGTTGTAGTGAAAGGGGAAAAAGCAGATCCGTTGAAGGTATTGGAGAGAATACAGAAAAAGAGTCATCGTCAAGTTGAGCTTCTCTCTCCAATCCCAAAACCACCGGCGGCGGCGGCGGACGAAGAGCCCAAGAAAACGGAGGAAAAAGAAGCCGTTAAAGCCGAAGAGAAAAAAGAGGAG.............................................................................................CCTCAGGTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E583415" ref_strand="+" ref_description="SGN-E583415 [9236]">
      <seq>gagagagaaaaaaccaaacctgtaacagctacatttccatttctgtttaacaatgggagaggaagagaagaaggtagaagaagtgaagaaagaggaggcaccgaaagatgaaaagccaagcgacggcggtggtggtgaagagaagaaagaggaaaaaaaggcggaggaagaatcaaaagaggcgaaaccagaacctccacctccaccaccggaaattgttttgagagttttcatgcattgtgaaggttgtgctcgtaaagtccgcaaatcgctcaaaggattccaaggagttgaagatgtgttgacggattgcaaaactcacaaggttgtagtgaaaggggaaaaagcagatccgttgaaggtattggagagaatacagaaaaagagtcatcgtcaagttgagcttctctctccaatcccaaaaccaccggcggcggcggcggccgaagagcccaagaaaccggaggaaaaagaagccgttaaagccgaagagaaaaaagaggagcctcaggtgattacagtagttctgaaagttcacatgcattgtgaggcttgtgcacaagaaatcaaaagacgtatacagacacatgaaaggtgtggagaatgcagaaccggactttaaaaaactca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0113N10.1" temp_strand="+" temp_description="C06SLm0113N10.1  AC219227.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0113N10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="105266" stop="107410"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105564" g_stop="105625" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="0.935"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105626" i_stop="105725" i_length="100">
            <donor d_prob="0.776" d_score="0.96"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105726" g_stop="105954" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="287" r_length="226" r_score="0.956"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105955" i_stop="106027" i_length="73">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106028" g_stop="106242" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="505" r_length="218" r_score="0.926"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106243" i_stop="106335" i_length="93">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106336" g_stop="106423" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="506" r_stop="594" r_length="89" r_score="0.955"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="106424" i_stop="107075" i_length="652">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.989" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="107076" g_stop="107110" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="595" r_stop="630" r_length="36" r_score="0.914"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0113N10.1" gen_strand="+" ref_id="SGN-E583415" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>629</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0113N10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E583415" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105564" e_stop="105625"/>
          <exon e_start="105726" e_stop="105954"/>
          <exon e_start="106028" e_stop="106242"/>
          <exon e_start="106336" e_stop="106423"/>
          <exon e_start="107076" e_stop="107110"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGAGAGAAAAACGAAACCTGTAACAGATACATTTCCATTTCTGTTTAACAATGGGAGAGGTCGATTTGCTTTCTGCTCGTTACTTTTTTCTTTTCTTTTTGGTTGTTGAGATTTTTGATTGATTTGGTTGTGTTGCTTATTAGTAATTTTTTTATTCAGGAAGAGAAGAAGGTAGAAGAAGTGAAGAAAGAGGAGGCACCGAAAGATGAAAAGCCAAGTGACGGCGGCGGCGGTGAAGAGAAGAAAGAGGAAAAAAAGGCGGAGGAAGAATCGAAAGAGGCGAAACCAGAACCTCCACCACCACCACCACCTGAAATTGTTTTGAGAGTTTTCATGCATTGTGAAGGTTGTGCTCGTAAAGTCCGCAAATCGCTCAAAGGATTTCAAGGTACTAATAAGGATTTTTTTTTTTTAAATTTGGATGATTGATATAAAAATAAATTGAATGATTTTGTTTATAGGAGTTGAAGATGTGTTGACGGACTGCAAAACTCATAAGGTTGTGGTGAAAGGGGAAAAAGCAGATCCGTTGAAGGTATTGGAGAGAATACAGAAAAAGAGTCATCGTCAAGTTGAGCTTCTCTCACCAATCCCAAAACCACCGG-AGC--CGGCGGCTGAAGAACCTAAGAAACCGGAGGAAAAAGAAGCCGTTAAACCCGATGAGAAAAAAGAGGAGGTATATTTATTTATTTTATTTATTTCTCTCACTTTATTTGTTTTTAATGTAAAAGTCATATATGCAAATGGTTTTCTATGTTTGTTTGTGCAGCCTCAGGTCATTACAGTAGTTCTGAAAGTTCACATGCATTGTGAGGCTTGTGCACAAGAAATCAAAAGACGTATACAGA-AAATGAAAGGCAAGATTATTTAAAATTTTGGTTTTAATTTTAATTATTTTCATCTCTTTTTGCTTAATTAATTTACTACACCCTATTTTGCTTTCTGGTTTTGTGTTTGTTACACTTTTCAGCTGTATTTGTTGAAGAAAGTTTTTTTTTCTCCTTTTTGGATCTCTAAATTAGCATTGGATACTTGAGGATTCTATATTTTATATATCACCTTTCACTATCTAACATTTTTTATATTAGTCAGTAGGGAATAGAATATTCAATTCTTAATACGATTCTCTTAAAATTCTTCAATGTGTTAGTTTAATTCAAATCACATGTCTTCCAGTACTAAATATATTCACTTAATAAACTATTGATTTGAATCTTTGAAACCAATTTCTAGTATTGACTGTTAGGTTTCATCAAAAGTTGCAAGTAACTTAAGGAAATTAGTTGTGCATATGGAGTCTTCCACTACTAAATAGATTTTTTTTTTTGGATTTCGTTGTTTTTGTGTCTATTACTTCGAAAGTAGCTGCTTCAACTTCCCATCAAATTTTTGATATTCCTTTTTATTGATTGACATCTTCTTGAGGTATCCAATGCTAAAAACCTTAAAGTTTAGACTTATGGAGTTAAGATTCAAAATTCGTCTGACGTTAACTGTGCTTGAATTTAGGTGTGGAGAATGCAGAACCGGAC-TTGAAAAACTCA</genome_strand>
        <mrna_strand>GAGAGAGA-AAAAACCAAACCTGTAACAGCTACATTTCCATTTCTGTTTAACAATGGGAGAG....................................................................................................GAAGAGAAGAAGGTAGAAGAAGTGAAGAAAGAGGAGGCACCGAAAGATGAAAAGCCAAGCGACGGCGGTGGTGGTGAAGAGAAGAAAGAGGAAAAAAAGGCGGAGGAAGAATCAAAAGAGGCGAAACCAGAACCT---CCACCTCCACCACCGGAAATTGTTTTGAGAGTTTTCATGCATTGTGAAGGTTGTGCTCGTAAAGTCCGCAAATCGCTCAAAGGATTCCAAG.........................................................................GAGTTGAAGATGTGTTGACGGATTGCAAAACTCACAAGGTTGTAGTGAAAGGGGAAAAAGCAGATCCGTTGAAGGTATTGGAGAGAATACAGAAAAAGAGTCATCGTCAAGTTGAGCTTCTCTCTCCAATCCCAAAACCACCGGCGGCGGCGGCGGCCGAAGAGCCCAAGAAACCGGAGGAAAAAGAAGCCGTTAAAGCCGAAGAGAAAAAAGAGGAG.............................................................................................CCTCAGGTGATTACAGTAGTTCTGAAAGTTCACATGCATTGTGAGGCTTGTGCACAAGAAATCAAAAGACGTATACAGACACATGAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGGAGAATGCAGAACCGGACTTTAAAAAACTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E581880" ref_strand="+" ref_description="SGN-E581880 [7511]">
      <seq>aacaatgggagaggaagagaagaaggtagaacaagtgaagaaagaggaggcaccgaaagatgcaaagtcgagcgacggcgggtggtggtgaagagaagaaagaggaaaaaaaggcggaggaagaatcaaaagaggcgaaaccagaacctccacctccaccaccgggaaattgttttgagagttttcatgcattgtgaaggttgtgctcgtaaagtccgcaattcgctcaaaggattccaaggcagttgaagatgtgttgacggattgcaaaactcataaggttgtagtgaaaggggaaaaagcagatccgttgaaggtattggagagaatacagaagaagagtcatcgtcaagttgagcttctctctccaatcccaaaaccaccggcggcggcggccgaaaagcccaagaaaccggaggaaaaagaagccgttaaagccgaagagaaaaaagaggagcctcaggtgattacagtagttctgaaagttcacatgcattgtgaggcttgtgcacaagaaatcaaaagacgtatacagaaaatgaaaggtgtggagaatgcagaaccgggacttgaaaaaatcaccggtgacagtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0113N10.1" temp_strand="+" temp_description="C06SLm0113N10.1  AC219227.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0113N10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="105424" stop="107422"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105613" g_stop="105625" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="13" r_length="13" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105626" i_stop="105725" i_length="100">
            <donor d_prob="0.776" d_score="0.00"/>
            <acceptor a_prob="0.989" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105726" g_stop="105954" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="241" r_length="228" r_score="0.926"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105955" i_stop="106027" i_length="73">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106028" g_stop="106242" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="457" r_length="216" r_score="0.935"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106243" i_stop="106335" i_length="93">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="106336" g_stop="106423" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="545" r_length="88" r_score="0.989"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="106424" i_stop="107075" i_length="652">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.91"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="107076" g_stop="107122" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="546" r_stop="593" r_length="48" r_score="0.915"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0113N10.1" gen_strand="+" ref_id="SGN-E581880" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>592</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0113N10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E581880" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105613" e_stop="105625"/>
          <exon e_start="105726" e_stop="105954"/>
          <exon e_start="106028" e_stop="106242"/>
          <exon e_start="106336" e_stop="106423"/>
          <exon e_start="107076" e_stop="107122"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAATGGGAGAGGTCGATTTGCTTTCTGCTCGTTACTTTTTTCTTTTCTTTTTGGTTGTTGAGATTTTTGATTGATTTGGTTGTGTTGCTTATTAGTAATTTTTTTATTCAGGAAGAGAAGAAGGTAGAAGAAGTGAAGAAAGAGGAGGCACCGAAAGATGAAAAGCCAAGTGACGGC-GGCGGCGGTGAAGAGAAGAAAGAGGAAAAAAAGGCGGAGGAAGAATCGAAAGAGGCGAAACCAGAACCTCCACCACCACCACCACCTGAAATTGTTTTGAGAGTTTTCATGCATTGTGAAGGTTGTGCTCGTAAAGTCCGCAAATCGCTCAAAGGATTTCAAGGTACTAATAAGGATTTTTTTTTTTTAAATTTGGATGATTGATATAAAAATAAATTGAATGATTTTGTTTATAGG-AGTTGAAGATGTGTTGACGGACTGCAAAACTCATAAGGTTGTGGTGAAAGGGGAAAAAGCAGATCCGTTGAAGGTATTGGAGAGAATACAGAAAAAGAGTCATCGTCAAGTTGAGCTTCTCTCACCAATCCCAAAACCACCGGAGCCGGCGGCTGAAGAACCTAAGAAACCGGAGGAAAAAGAAGCCGTTAAACCCGATGAGAAAAAAGAGGAGGTATATTTATTTATTTTATTTATTTCTCTCACTTTATTTGTTTTTAATGTAAAAGTCATATATGCAAATGGTTTTCTATGTTTGTTTGTGCAGCCTCAGGTCATTACAGTAGTTCTGAAAGTTCACATGCATTGTGAGGCTTGTGCACAAGAAATCAAAAGACGTATACAGAAAATGAAAGGCAAGATTATTTAAAATTTTGGTTTTAATTTTAATTATTTTCATCTCTTTTTGCTTAATTAATTTACTACACCCTATTTTGCTTTCTGGTTTTGTGTTTGTTACACTTTTCAGCTGTATTTGTTGAAGAAAGTTTTTTTTTCTCCTTTTTGGATCTCTAAATTAGCATTGGATACTTGAGGATTCTATATTTTATATATCACCTTTCACTATCTAACATTTTTTATATTAGTCAGTAGGGAATAGAATATTCAATTCTTAATACGATTCTCTTAAAATTCTTCAATGTGTTAGTTTAATTCAAATCACATGTCTTCCAGTACTAAATATATTCACTTAATAAACTATTGATTTGAATCTTTGAAACCAATTTCTAGTATTGACTGTTAGGTTTCATCAAAAGTTGCAAGTAACTTAAGGAAATTAGTTGTGCATATGGAGTCTTCCACTACTAAATAGATTTTTTTTTTTGGATTTCGTTGTTTTTGTGTCTATTACTTCGAAAGTAGCTGCTTCAACTTCCCATCAAATTTTTGATATTCCTTTTTATTGATTGACATCTTCTTGAGGTATCCAATGCTAAAAACCTTAAAGTTTAGACTTATGGAGTTAAGATTCAAAATTCGTCTGACGTTAACTGTGCTTGAATTTAGGTGTGGAGAATGCAGAACC-GGACTTGAAAAACTCACAGGTGACAGTG</genome_strand>
        <mrna_strand>AACAATGGGAGAG....................................................................................................GAAGAGAAGAAGGTAGAACAAGTGAAGAAAGAGGAGGCACCGAAAGATGCAAAGTCGAGCGACGGCGGGTGGTGGTGAAGAGAAGAAAGAGGAAAAAAAGGCGGAGGAAGAATCAAAAGAGGCGAAACCAGAACCTCCACCTCCACCA-C-CGGGAAATTGTTTTGAGAGTTTTCATGCATTGTGAAGGTTGTGCTCGTAAAGTCCGCAATTCGCTCAAAGGATTCCAAG.........................................................................GCAGTTGAAGATGTGTTGACGGATTGCAAAACTCATAAGGTTGTAGTGAAAGGGGAAAAAGCAGATCCGTTGAAGGTATTGGAGAGAATACAGAAGAAGAGTCATCGTCAAGTTGAGCTTCTCTCTCCAATCCCAAAACCACCGGCGGCGGCGGCCGAAAAGCCCAAGAAACCGGAGGAAAAAGAAGCCGTTAAAGCCGAAGAGAAAAAAGAGGAG.............................................................................................CCTCAGGTGATTACAGTAGTTCTGAAAGTTCACATGCATTGTGAGGCTTGTGCACAAGAAATCAAAAGACGTATACAGAAAATGAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGGAGAATGCAGAACCGGGACTTGAAAAAATCACCGGTGACAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E450512" ref_strand="+" ref_description="SGN-E450512 [cSTS-9-H1]">
      <seq>aggaagagaagaaggtagaagaagtgaagaaagaggaggcaccgaaagatgaaaagccaagcgacggcggtggtggtgaagagaagaaagagggaaaaaaggcggaggaagaatcaaaagaggcaaaacctgaacctccaccaccaccaccggaaattgttttgagaagttttcatgcattgtgaaggttgtgctcgtaaagtccgcaaatcgctcaaaggattccaaggagttgaagatgtgttgacggattgcaaaactcataaggttgtagtgaaaggggaaaaagcagatccgttgaaggtattggagagaatacagaaaaagagtcatcgtcaagttgagcttctctctccaatcccaaaaccaccggcggcggcggcggccgaagagcccaagaaaccggaggaaaaagaagccgttaaagccgaagagaaaaaagaggagcctcaggtgattacagtagttctgaaagttcacatgcattgtgaggcttgtgcacaagaaatcaaaagacgtatacagaaaatgaaaggtgtggagaatgcagaaccggacttgaaaaactcacaagtgacagtgaaaggtgtgtttgaggcaacaaaactggtggaatatgtaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0113N10.1" temp_strand="+" temp_description="C06SLm0113N10.1  AC219227.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0113N10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="105424" stop="107463"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105724" g_stop="105954" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="229" r_length="229" r_score="0.939"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105955" i_stop="106027" i_length="73">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106028" g_stop="106242" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="447" r_length="218" r_score="0.930"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106243" i_stop="106335" i_length="93">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106336" g_stop="106423" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="535" r_length="88" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106424" i_stop="107075" i_length="652">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="107076" g_stop="107163" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="536" r_stop="623" r_length="88" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0113N10.1" gen_strand="+" ref_id="SGN-E450512" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>622</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0113N10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E450512" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105724" e_stop="105954"/>
          <exon e_start="106028" e_stop="106242"/>
          <exon e_start="106336" e_stop="106423"/>
          <exon e_start="107076" e_stop="107163"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAAGAGAAGAAGGTAGAAGAAGTGAAGAAAGAGGAGGCACCGAAAGATGAAAAGCCAAGTGACGGCGGCGGCGGTGAAGAGAAGAAAGAGGAAAAAAAGGCGGAGGAAGAATCGAAAGAGGCGAAACCAGAACCTCCACCACCACCACCACCTGAAATTGTTTTGAG-AGTTTTCATGCATTGTGAAGGTTGTGCTCGTAAAGTCCGCAAATCGCTCAAAGGATTTCAAGGTACTAATAAGGATTTTTTTTTTTTAAATTTGGATGATTGATATAAAAATAAATTGAATGATTTTGTTTATAGGAGTTGAAGATGTGTTGACGGACTGCAAAACTCATAAGGTTGTGGTGAAAGGGGAAAAAGCAGATCCGTTGAAGGTATTGGAGAGAATACAGAAAAAGAGTCATCGTCAAGTTGAGCTTCTCTCACCAATCCCAAAACCACCGG-AGC--CGGCGGCTGAAGAACCTAAGAAACCGGAGGAAAAAGAAGCCGTTAAACCCGATGAGAAAAAAGAGGAGGTATATTTATTTATTTTATTTATTTCTCTCACTTTATTTGTTTTTAATGTAAAAGTCATATATGCAAATGGTTTTCTATGTTTGTTTGTGCAGCCTCAGGTCATTACAGTAGTTCTGAAAGTTCACATGCATTGTGAGGCTTGTGCACAAGAAATCAAAAGACGTATACAGAAAATGAAAGGCAAGATTATTTAAAATTTTGGTTTTAATTTTAATTATTTTCATCTCTTTTTGCTTAATTAATTTACTACACCCTATTTTGCTTTCTGGTTTTGTGTTTGTTACACTTTTCAGCTGTATTTGTTGAAGAAAGTTTTTTTTTCTCCTTTTTGGATCTCTAAATTAGCATTGGATACTTGAGGATTCTATATTTTATATATCACCTTTCACTATCTAACATTTTTTATATTAGTCAGTAGGGAATAGAATATTCAATTCTTAATACGATTCTCTTAAAATTCTTCAATGTGTTAGTTTAATTCAAATCACATGTCTTCCAGTACTAAATATATTCACTTAATAAACTATTGATTTGAATCTTTGAAACCAATTTCTAGTATTGACTGTTAGGTTTCATCAAAAGTTGCAAGTAACTTAAGGAAATTAGTTGTGCATATGGAGTCTTCCACTACTAAATAGATTTTTTTTTTTGGATTTCGTTGTTTTTGTGTCTATTACTTCGAAAGTAGCTGCTTCAACTTCCCATCAAATTTTTGATATTCCTTTTTATTGATTGACATCTTCTTGAGGTATCCAATGCTAAAAACCTTAAAGTTTAGACTTATGGAGTTAAGATTCAAAATTCGTCTGACGTTAACTGTGCTTGAATTTAGGTGTGGAGAATGCAGAACCGGACTTGAAAAACTCACAGGTGACAGTGAAAGGTGTGTTTGAGGCAACAAAACTGGTGGAATATGTTAG</genome_strand>
        <mrna_strand>AGGAAGAGAAGAAGGTAGAAGAAGTGAAGAAAGAGGAGGCACCGAAAGATGAAAAGCCAAGCGACGGCGGTGGTGGTGAAGAGAAGAAAGAGGGAAAAAAGGCGGAGGAAGAATCAAAAGAGGCAAAACCTGAACCT---CCACCACCACCACCGGAAATTGTTTTGAGAAGTTTTCATGCATTGTGAAGGTTGTGCTCGTAAAGTCCGCAAATCGCTCAAAGGATTCCAAG.........................................................................GAGTTGAAGATGTGTTGACGGATTGCAAAACTCATAAGGTTGTAGTGAAAGGGGAAAAAGCAGATCCGTTGAAGGTATTGGAGAGAATACAGAAAAAGAGTCATCGTCAAGTTGAGCTTCTCTCTCCAATCCCAAAACCACCGGCGGCGGCGGCGGCCGAAGAGCCCAAGAAACCGGAGGAAAAAGAAGCCGTTAAAGCCGAAGAGAAAAAAGAGGAG.............................................................................................CCTCAGGTGATTACAGTAGTTCTGAAAGTTCACATGCATTGTGAGGCTTGTGCACAAGAAATCAAAAGACGTATACAGAAAATGAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGGAGAATGCAGAACCGGACTTGAAAAACTCACAAGTGACAGTGAAAGGTGTGTTTGAGGCAACAAAACTGGTGGAATATGTAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E266146" ref_strand="-" ref_description="SGN-E266146 [cLEI-6-F12]">
      <seq>ccaccaccaccaccacntgaaattgttttgagagttttcatgcattgtgaaggttgtgctcgtaaagtccgcaaatcgctcaaaggatttcaaggagttgaagatgtgttgacggactgcaaaactcataaggttgtggtgaaaggggaaaaagcagatccgttgaaggtattggagagaatacagaaaaagagtcatcgtcaagttgagcttctctcaccaatcccaaaaccaccggagccggcggctgaagaacctaagaaaccggaggaaaaagaagccgttaaacccgatgagaaaaaagaggagcctcaggtcattacagtagttctgaaagttcacatgcattgtgaggcttgtgcacaagaaatcaaaagacgtatacagaaaatgaaaggtgtggagaatgcagaaccggacttgaaaaactcacaggtgacagtgaaaggtgtgtttgaggcaacaaaactggtggaatatgttagcaaaaggactggaaaacgggcagttattgtgaaagtagaacctgaaaagaaagcggaggaggaggcgaagcccaaggaagatcaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0113N10.1" temp_strand="+" temp_description="C06SLm0113N10.1  AC219227.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0113N10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="105561" stop="107563"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105861" g_stop="105954" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="94" r_length="94" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105955" i_stop="106027" i_length="73">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106028" g_stop="106242" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="309" r_length="215" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106243" i_stop="106335" i_length="93">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106336" g_stop="106423" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="397" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106424" i_stop="107075" i_length="652">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="107076" g_stop="107260" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="398" r_stop="582" r_length="185" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0113N10.1" gen_strand="+" ref_id="SGN-E266146" ref_strand="-">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>582</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0113N10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E266146" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="105861" e_stop="105954"/>
          <exon e_start="106028" e_stop="106242"/>
          <exon e_start="106336" e_stop="106423"/>
          <exon e_start="107076" e_stop="107260"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCACCACCACCACCACCTGAAATTGTTTTGAGAGTTTTCATGCATTGTGAAGGTTGTGCTCGTAAAGTCCGCAAATCGCTCAAAGGATTTCAAGGTACTAATAAGGATTTTTTTTTTTTAAATTTGGATGATTGATATAAAAATAAATTGAATGATTTTGTTTATAGGAGTTGAAGATGTGTTGACGGACTGCAAAACTCATAAGGTTGTGGTGAAAGGGGAAAAAGCAGATCCGTTGAAGGTATTGGAGAGAATACAGAAAAAGAGTCATCGTCAAGTTGAGCTTCTCTCACCAATCCCAAAACCACCGGAGCCGGCGGCTGAAGAACCTAAGAAACCGGAGGAAAAAGAAGCCGTTAAACCCGATGAGAAAAAAGAGGAGGTATATTTATTTATTTTATTTATTTCTCTCACTTTATTTGTTTTTAATGTAAAAGTCATATATGCAAATGGTTTTCTATGTTTGTTTGTGCAGCCTCAGGTCATTACAGTAGTTCTGAAAGTTCACATGCATTGTGAGGCTTGTGCACAAGAAATCAAAAGACGTATACAGAAAATGAAAGGCAAGATTATTTAAAATTTTGGTTTTAATTTTAATTATTTTCATCTCTTTTTGCTTAATTAATTTACTACACCCTATTTTGCTTTCTGGTTTTGTGTTTGTTACACTTTTCAGCTGTATTTGTTGAAGAAAGTTTTTTTTTCTCCTTTTTGGATCTCTAAATTAGCATTGGATACTTGAGGATTCTATATTTTATATATCACCTTTCACTATCTAACATTTTTTATATTAGTCAGTAGGGAATAGAATATTCAATTCTTAATACGATTCTCTTAAAATTCTTCAATGTGTTAGTTTAATTCAAATCACATGTCTTCCAGTACTAAATATATTCACTTAATAAACTATTGATTTGAATCTTTGAAACCAATTTCTAGTATTGACTGTTAGGTTTCATCAAAAGTTGCAAGTAACTTAAGGAAATTAGTTGTGCATATGGAGTCTTCCACTACTAAATAGATTTTTTTTTTTGGATTTCGTTGTTTTTGTGTCTATTACTTCGAAAGTAGCTGCTTCAACTTCCCATCAAATTTTTGATATTCCTTTTTATTGATTGACATCTTCTTGAGGTATCCAATGCTAAAAACCTTAAAGTTTAGACTTATGGAGTTAAGATTCAAAATTCGTCTGACGTTAACTGTGCTTGAATTTAGGTGTGGAGAATGCAGAACCGGACTTGAAAAACTCACAGGTGACAGTGAAAGGTGTGTTTGAGGCAACAAAACTGGTGGAATATGTTAGCAAAAGGACTGGAAAACGGGCAGTTATTGTGAAAGTAGAACCTGAAAAGAAAGCGGAGGAGGAGGCGAAGCCCAAGGAAGATCAAAAGGAAGAGAAG</genome_strand>
        <mrna_strand>CCACCACCACCACCACNTGAAATTGTTTTGAGAGTTTTCATGCATTGTGAAGGTTGTGCTCGTAAAGTCCGCAAATCGCTCAAAGGATTTCAAG.........................................................................GAGTTGAAGATGTGTTGACGGACTGCAAAACTCATAAGGTTGTGGTGAAAGGGGAAAAAGCAGATCCGTTGAAGGTATTGGAGAGAATACAGAAAAAGAGTCATCGTCAAGTTGAGCTTCTCTCACCAATCCCAAAACCACCGGAGCCGGCGGCTGAAGAACCTAAGAAACCGGAGGAAAAAGAAGCCGTTAAACCCGATGAGAAAAAAGAGGAG.............................................................................................CCTCAGGTCATTACAGTAGTTCTGAAAGTTCACATGCATTGTGAGGCTTGTGCACAAGAAATCAAAAGACGTATACAGAAAATGAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGGAGAATGCAGAACCGGACTTGAAAAACTCACAGGTGACAGTGAAAGGTGTGTTTGAGGCAACAAAACTGGTGGAATATGTTAGCAAAAGGACTGGAAAACGGGCAGTTATTGTGAAAGTAGAACCTGAAAAGAAAGCGGAGGAGGAGGCGAAGCCCAAGGAAGATCAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E537674" ref_strand="-" ref_description="SGN-E537674 [TUS-56-G9]">
      <seq>accaccacttgaaattgttttgagagttttcatgcattgtgaaggttgtgctcgtaaagtccgcaaatcgctcaaaggatttcaaggagttgaagatgtgttgacggactgcaaaactcataaggttgtggtgaaaggggaaaaagcagatccgttgaaggtattggagagaatacagaaaaagagtcatcgtcaagttgagcttctctcaccaatcccaaaaccaccggagccggcggctgaagaacctaagaaaccggaggaaaaagaagccgttaaacccgatgagaaaaaagaggagcctcaggtcattacagtagttctgaaagttcacatgcattgtgaggcttgtgcacaagaaatcaaaagacgtatacagaaaatgaaaggtgtggagaatgcagaaccggacttgaaaaactcacaggtgacagtgaaaggtgtgtttgaggcaacaaaactggtggaatatgttagcaaaaggactggaaaacgggcagttattgtgaaagtagaacctgaaaagaaagcggaggaggaggcgaagcccaaggaagatcaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0113N10.1" temp_strand="+" temp_description="C06SLm0113N10.1  AC219227.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0113N10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="105569" stop="107564"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105869" g_stop="105954" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="86" r_length="86" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105955" i_stop="106027" i_length="73">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106028" g_stop="106242" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="301" r_length="215" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106243" i_stop="106335" i_length="93">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106336" g_stop="106423" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="389" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106424" i_stop="107075" i_length="652">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="107076" g_stop="107261" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="575" r_length="186" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0113N10.1" gen_strand="+" ref_id="SGN-E537674" ref_strand="-">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>575</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0113N10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E537674" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="105869" e_stop="105954"/>
          <exon e_start="106028" e_stop="106242"/>
          <exon e_start="106336" e_stop="106423"/>
          <exon e_start="107076" e_stop="107261"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCACCACCTGAAATTGTTTTGAGAGTTTTCATGCATTGTGAAGGTTGTGCTCGTAAAGTCCGCAAATCGCTCAAAGGATTTCAAGGTACTAATAAGGATTTTTTTTTTTTAAATTTGGATGATTGATATAAAAATAAATTGAATGATTTTGTTTATAGGAGTTGAAGATGTGTTGACGGACTGCAAAACTCATAAGGTTGTGGTGAAAGGGGAAAAAGCAGATCCGTTGAAGGTATTGGAGAGAATACAGAAAAAGAGTCATCGTCAAGTTGAGCTTCTCTCACCAATCCCAAAACCACCGGAGCCGGCGGCTGAAGAACCTAAGAAACCGGAGGAAAAAGAAGCCGTTAAACCCGATGAGAAAAAAGAGGAGGTATATTTATTTATTTTATTTATTTCTCTCACTTTATTTGTTTTTAATGTAAAAGTCATATATGCAAATGGTTTTCTATGTTTGTTTGTGCAGCCTCAGGTCATTACAGTAGTTCTGAAAGTTCACATGCATTGTGAGGCTTGTGCACAAGAAATCAAAAGACGTATACAGAAAATGAAAGGCAAGATTATTTAAAATTTTGGTTTTAATTTTAATTATTTTCATCTCTTTTTGCTTAATTAATTTACTACACCCTATTTTGCTTTCTGGTTTTGTGTTTGTTACACTTTTCAGCTGTATTTGTTGAAGAAAGTTTTTTTTTCTCCTTTTTGGATCTCTAAATTAGCATTGGATACTTGAGGATTCTATATTTTATATATCACCTTTCACTATCTAACATTTTTTATATTAGTCAGTAGGGAATAGAATATTCAATTCTTAATACGATTCTCTTAAAATTCTTCAATGTGTTAGTTTAATTCAAATCACATGTCTTCCAGTACTAAATATATTCACTTAATAAACTATTGATTTGAATCTTTGAAACCAATTTCTAGTATTGACTGTTAGGTTTCATCAAAAGTTGCAAGTAACTTAAGGAAATTAGTTGTGCATATGGAGTCTTCCACTACTAAATAGATTTTTTTTTTTGGATTTCGTTGTTTTTGTGTCTATTACTTCGAAAGTAGCTGCTTCAACTTCCCATCAAATTTTTGATATTCCTTTTTATTGATTGACATCTTCTTGAGGTATCCAATGCTAAAAACCTTAAAGTTTAGACTTATGGAGTTAAGATTCAAAATTCGTCTGACGTTAACTGTGCTTGAATTTAGGTGTGGAGAATGCAGAACCGGACTTGAAAAACTCACAGGTGACAGTGAAAGGTGTGTTTGAGGCAACAAAACTGGTGGAATATGTTAGCAAAAGGACTGGAAAACGGGCAGTTATTGTGAAAGTAGAACCTGAAAAGAAAGCGGAGGAGGAGGCGAAGCCCAAGGAAGATCAAAAGGAAGAGAAGA</genome_strand>
        <mrna_strand>ACCACCACTTGAAATTGTTTTGAGAGTTTTCATGCATTGTGAAGGTTGTGCTCGTAAAGTCCGCAAATCGCTCAAAGGATTTCAAG.........................................................................GAGTTGAAGATGTGTTGACGGACTGCAAAACTCATAAGGTTGTGGTGAAAGGGGAAAAAGCAGATCCGTTGAAGGTATTGGAGAGAATACAGAAAAAGAGTCATCGTCAAGTTGAGCTTCTCTCACCAATCCCAAAACCACCGGAGCCGGCGGCTGAAGAACCTAAGAAACCGGAGGAAAAAGAAGCCGTTAAACCCGATGAGAAAAAAGAGGAG.............................................................................................CCTCAGGTCATTACAGTAGTTCTGAAAGTTCACATGCATTGTGAGGCTTGTGCACAAGAAATCAAAAGACGTATACAGAAAATGAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGGAGAATGCAGAACCGGACTTGAAAAACTCACAGGTGACAGTGAAAGGTGTGTTTGAGGCAACAAAACTGGTGGAATATGTTAGCAAAAGGACTGGAAAACGGGCAGTTATTGTGAAAGTAGAACCTGAAAAGAAAGCGGAGGAGGAGGCGAAGCCCAAGGAAGATCAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E217429" ref_strand="+" ref_description="SGN-E217429 [cLEL-21-M15](-)">
      <seq>gttttcatgcattgtgaaggttgtgctcgtaaagtccgcaaatcgctcaaaggatttcaaggagttgaagatgtgttgacggactgcaaaactcataaggttgtggtgaaaggggaaaaagcagatccgttgaaggtattggagagaatacagaaaaagagtcatcgtcaagttgagcttctctcaccaatcccaaaaccaccggagccggcggctgaagaacctaagaaaccggaggaaaaagaagccgttaaacccgatgagaaaaaagaggagcctcaggtcattacagtagttctgaaagttcacatgcattgtgaggcttgtgcacaagaaatcaaaagacgtatacagaaaatgaaaggtgtggagaatgcagaaccggacttgaaaaactcacaggtgacagtgaaaggtgtgtttgaggcaacaaaactggtggaatatgttagcaaaaggactggaaaacgggcagttattgtgaaagtagaacctgaaaagaaagcggaggaggaggcgaagcccaaggaagatcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0113N10.1" temp_strand="+" temp_description="C06SLm0113N10.1  AC219227.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0113N10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="105594" stop="107564"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105894" g_stop="105954" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105955" i_stop="106027" i_length="73">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106028" g_stop="106242" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="276" r_length="215" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106243" i_stop="106335" i_length="93">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106336" g_stop="106423" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="364" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106424" i_stop="107075" i_length="652">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="107076" g_stop="107263" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="552" r_length="188" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0113N10.1" gen_strand="+" ref_id="SGN-E217429" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>552</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0113N10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E217429" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105894" e_stop="105954"/>
          <exon e_start="106028" e_stop="106242"/>
          <exon e_start="106336" e_stop="106423"/>
          <exon e_start="107076" e_stop="107263"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTCATGCATTGTGAAGGTTGTGCTCGTAAAGTCCGCAAATCGCTCAAAGGATTTCAAGGTACTAATAAGGATTTTTTTTTTTTAAATTTGGATGATTGATATAAAAATAAATTGAATGATTTTGTTTATAGGAGTTGAAGATGTGTTGACGGACTGCAAAACTCATAAGGTTGTGGTGAAAGGGGAAAAAGCAGATCCGTTGAAGGTATTGGAGAGAATACAGAAAAAGAGTCATCGTCAAGTTGAGCTTCTCTCACCAATCCCAAAACCACCGGAGCCGGCGGCTGAAGAACCTAAGAAACCGGAGGAAAAAGAAGCCGTTAAACCCGATGAGAAAAAAGAGGAGGTATATTTATTTATTTTATTTATTTCTCTCACTTTATTTGTTTTTAATGTAAAAGTCATATATGCAAATGGTTTTCTATGTTTGTTTGTGCAGCCTCAGGTCATTACAGTAGTTCTGAAAGTTCACATGCATTGTGAGGCTTGTGCACAAGAAATCAAAAGACGTATACAGAAAATGAAAGGCAAGATTATTTAAAATTTTGGTTTTAATTTTAATTATTTTCATCTCTTTTTGCTTAATTAATTTACTACACCCTATTTTGCTTTCTGGTTTTGTGTTTGTTACACTTTTCAGCTGTATTTGTTGAAGAAAGTTTTTTTTTCTCCTTTTTGGATCTCTAAATTAGCATTGGATACTTGAGGATTCTATATTTTATATATCACCTTTCACTATCTAACATTTTTTATATTAGTCAGTAGGGAATAGAATATTCAATTCTTAATACGATTCTCTTAAAATTCTTCAATGTGTTAGTTTAATTCAAATCACATGTCTTCCAGTACTAAATATATTCACTTAATAAACTATTGATTTGAATCTTTGAAACCAATTTCTAGTATTGACTGTTAGGTTTCATCAAAAGTTGCAAGTAACTTAAGGAAATTAGTTGTGCATATGGAGTCTTCCACTACTAAATAGATTTTTTTTTTTGGATTTCGTTGTTTTTGTGTCTATTACTTCGAAAGTAGCTGCTTCAACTTCCCATCAAATTTTTGATATTCCTTTTTATTGATTGACATCTTCTTGAGGTATCCAATGCTAAAAACCTTAAAGTTTAGACTTATGGAGTTAAGATTCAAAATTCGTCTGACGTTAACTGTGCTTGAATTTAGGTGTGGAGAATGCAGAACCGGACTTGAAAAACTCACAGGTGACAGTGAAAGGTGTGTTTGAGGCAACAAAACTGGTGGAATATGTTAGCAAAAGGACTGGAAAACGGGCAGTTATTGTGAAAGTAGAACCTGAAAAGAAAGCGGAGGAGGAGGCGAAGCCCAAGGAAGATCAAAAGGAAGAGAAGAAA</genome_strand>
        <mrna_strand>GTTTTCATGCATTGTGAAGGTTGTGCTCGTAAAGTCCGCAAATCGCTCAAAGGATTTCAAG.........................................................................GAGTTGAAGATGTGTTGACGGACTGCAAAACTCATAAGGTTGTGGTGAAAGGGGAAAAAGCAGATCCGTTGAAGGTATTGGAGAGAATACAGAAAAAGAGTCATCGTCAAGTTGAGCTTCTCTCACCAATCCCAAAACCACCGGAGCCGGCGGCTGAAGAACCTAAGAAACCGGAGGAAAAAGAAGCCGTTAAACCCGATGAGAAAAAAGAGGAG.............................................................................................CCTCAGGTCATTACAGTAGTTCTGAAAGTTCACATGCATTGTGAGGCTTGTGCACAAGAAATCAAAAGACGTATACAGAAAATGAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGGAGAATGCAGAACCGGACTTGAAAAACTCACAGGTGACAGTGAAAGGTGTGTTTGAGGCAACAAAACTGGTGGAATATGTTAGCAAAAGGACTGGAAAACGGGCAGTTATTGTGAAAGTAGAACCTGAAAAGAAAGCGGAGGAGGAGGCGAAGCCCAAGGAAGATCAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E456766" ref_strand="-" ref_description="SGN-E456766 [cSTS-30-B5]">
      <seq>gtccgcaaatcgctcaaaggattccaaggagttgaagatgtgttgacggattgcaaaactcacaaggttgtagtgaaaggggaaaaagcagatccgttgaaggtattggagagaatacagaaaaagagtcatcgtcaagttgagcttctctctccaatcccaaaaccaccggcggcggcggcggccgaagagcccaagaaaccggaggaaaaagaagccgttaaagccgaagagaaaaaagaggagcctcaggtgattacagtagttctgaaagttcacatgcattgtgaggcttgtgcacaagaaatcaaaagacgtatacagaaaatgaaaggtgtggagaatgcagaaccggacttgaaaaactcacaagtgacagtgaaaggtgtgtttgaggcaacaaaactggtggaatatgtaagcaaaaggactggaaaacgggcagttattgtgaaagtagaacctgaacagaaagcgaaggaggaggctaagcccaaagaagatcaaaaaaaaaaaaaaaaaactcgagactagttctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0113N10.1" temp_strand="+" temp_description="C06SLm0113N10.1  AC219227.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0113N10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="105627" stop="107571"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105927" g_stop="105954" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="28" r_length="28" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105955" i_stop="106027" i_length="73">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106028" g_stop="106242" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="246" r_length="218" r_score="0.926"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106243" i_stop="106335" i_length="93">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106336" g_stop="106423" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="334" r_length="88" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106424" i_stop="107075" i_length="652">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="107076" g_stop="107250" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="509" r_length="175" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="510" polyA_stop="524"/>
      <MATCH_line gen_id="C06SLm0113N10.1" gen_strand="+" ref_id="SGN-E456766" ref_strand="-">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>506</cumulative_length_of_scored_exons>
        <coverage percentage="0.937" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0113N10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E456766" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="105927" e_stop="105954"/>
          <exon e_start="106028" e_stop="106242"/>
          <exon e_start="106336" e_stop="106423"/>
          <exon e_start="107076" e_stop="107250"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCCGCAAATCGCTCAAAGGATTTCAAGGTACTAATAAGGATTTTTTTTTTTTAAATTTGGATGATTGATATAAAAATAAATTGAATGATTTTGTTTATAGGAGTTGAAGATGTGTTGACGGACTGCAAAACTCATAAGGTTGTGGTGAAAGGGGAAAAAGCAGATCCGTTGAAGGTATTGGAGAGAATACAGAAAAAGAGTCATCGTCAAGTTGAGCTTCTCTCACCAATCCCAAAACCACCGG-AGC--CGGCGGCTGAAGAACCTAAGAAACCGGAGGAAAAAGAAGCCGTTAAACCCGATGAGAAAAAAGAGGAGGTATATTTATTTATTTTATTTATTTCTCTCACTTTATTTGTTTTTAATGTAAAAGTCATATATGCAAATGGTTTTCTATGTTTGTTTGTGCAGCCTCAGGTCATTACAGTAGTTCTGAAAGTTCACATGCATTGTGAGGCTTGTGCACAAGAAATCAAAAGACGTATACAGAAAATGAAAGGCAAGATTATTTAAAATTTTGGTTTTAATTTTAATTATTTTCATCTCTTTTTGCTTAATTAATTTACTACACCCTATTTTGCTTTCTGGTTTTGTGTTTGTTACACTTTTCAGCTGTATTTGTTGAAGAAAGTTTTTTTTTCTCCTTTTTGGATCTCTAAATTAGCATTGGATACTTGAGGATTCTATATTTTATATATCACCTTTCACTATCTAACATTTTTTATATTAGTCAGTAGGGAATAGAATATTCAATTCTTAATACGATTCTCTTAAAATTCTTCAATGTGTTAGTTTAATTCAAATCACATGTCTTCCAGTACTAAATATATTCACTTAATAAACTATTGATTTGAATCTTTGAAACCAATTTCTAGTATTGACTGTTAGGTTTCATCAAAAGTTGCAAGTAACTTAAGGAAATTAGTTGTGCATATGGAGTCTTCCACTACTAAATAGATTTTTTTTTTTGGATTTCGTTGTTTTTGTGTCTATTACTTCGAAAGTAGCTGCTTCAACTTCCCATCAAATTTTTGATATTCCTTTTTATTGATTGACATCTTCTTGAGGTATCCAATGCTAAAAACCTTAAAGTTTAGACTTATGGAGTTAAGATTCAAAATTCGTCTGACGTTAACTGTGCTTGAATTTAGGTGTGGAGAATGCAGAACCGGACTTGAAAAACTCACAGGTGACAGTGAAAGGTGTGTTTGAGGCAACAAAACTGGTGGAATATGTTAGCAAAAGGACTGGAAAACGGGCAGTTATTGTGAAAGTAGAACCTGAAAAGAAAGCGGAGGAGGAGGCGAAGCCCAAGGAAGATCAAAA</genome_strand>
        <mrna_strand>GTCCGCAAATCGCTCAAAGGATTCCAAG.........................................................................GAGTTGAAGATGTGTTGACGGATTGCAAAACTCACAAGGTTGTAGTGAAAGGGGAAAAAGCAGATCCGTTGAAGGTATTGGAGAGAATACAGAAAAAGAGTCATCGTCAAGTTGAGCTTCTCTCTCCAATCCCAAAACCACCGGCGGCGGCGGCGGCCGAAGAGCCCAAGAAACCGGAGGAAAAAGAAGCCGTTAAAGCCGAAGAGAAAAAAGAGGAG.............................................................................................CCTCAGGTGATTACAGTAGTTCTGAAAGTTCACATGCATTGTGAGGCTTGTGCACAAGAAATCAAAAGACGTATACAGAAAATGAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGGAGAATGCAGAACCGGACTTGAAAAACTCACAAGTGACAGTGAAAGGTGTGTTTGAGGCAACAAAACTGGTGGAATATGTAAGCAAAAGGACTGGAAAACGGGCAGTTATTGTGAAAGTAGAACCTGAACAGAAAGCGAAGGAGGAGGCTAAGCCCAAAGAAGATCAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E227575" ref_strand="+" ref_description="SGN-E227575 [cLEL-30-N5](-)">
      <seq>gaaaggggaaaaagcagatccgttgaaggtattggagagaatccagaaaaagagtcatcgtcaagttgagcttctctcaccaatcccaaaaccaccggagccggcggctgaagaacctaagaaaccggaggaaaaagaagccgttaaacccgatgagaaaaaagaggagcctcaggtcattacagtagttctgaaagttcacatgcattgtgaggcttgtgcacaagaaatcaaaagacgtatacagaaaatgaaaggtgtggagaatgcagaaccggacttgaaaaactcacaggtgacagtgaaaggtgtgtttgaggcaacaaaactggtggaatatgttagcaaaaggactggaaaacgggcagttattgtgaaagtagaacctgaaaagaaagcggaggaggaggcgaagcccaaggaagatcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0113N10.1" temp_strand="+" temp_description="C06SLm0113N10.1  AC219227.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0113N10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="105774" stop="107564"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106074" g_stop="106242" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="169" r_length="169" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106243" i_stop="106335" i_length="93">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106336" g_stop="106423" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="257" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106424" i_stop="107075" i_length="652">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="107076" g_stop="107263" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="445" r_length="188" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0113N10.1" gen_strand="+" ref_id="SGN-E227575" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>445</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0113N10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E227575" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106074" e_stop="106242"/>
          <exon e_start="106336" e_stop="106423"/>
          <exon e_start="107076" e_stop="107263"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGGGGAAAAAGCAGATCCGTTGAAGGTATTGGAGAGAATACAGAAAAAGAGTCATCGTCAAGTTGAGCTTCTCTCACCAATCCCAAAACCACCGGAGCCGGCGGCTGAAGAACCTAAGAAACCGGAGGAAAAAGAAGCCGTTAAACCCGATGAGAAAAAAGAGGAGGTATATTTATTTATTTTATTTATTTCTCTCACTTTATTTGTTTTTAATGTAAAAGTCATATATGCAAATGGTTTTCTATGTTTGTTTGTGCAGCCTCAGGTCATTACAGTAGTTCTGAAAGTTCACATGCATTGTGAGGCTTGTGCACAAGAAATCAAAAGACGTATACAGAAAATGAAAGGCAAGATTATTTAAAATTTTGGTTTTAATTTTAATTATTTTCATCTCTTTTTGCTTAATTAATTTACTACACCCTATTTTGCTTTCTGGTTTTGTGTTTGTTACACTTTTCAGCTGTATTTGTTGAAGAAAGTTTTTTTTTCTCCTTTTTGGATCTCTAAATTAGCATTGGATACTTGAGGATTCTATATTTTATATATCACCTTTCACTATCTAACATTTTTTATATTAGTCAGTAGGGAATAGAATATTCAATTCTTAATACGATTCTCTTAAAATTCTTCAATGTGTTAGTTTAATTCAAATCACATGTCTTCCAGTACTAAATATATTCACTTAATAAACTATTGATTTGAATCTTTGAAACCAATTTCTAGTATTGACTGTTAGGTTTCATCAAAAGTTGCAAGTAACTTAAGGAAATTAGTTGTGCATATGGAGTCTTCCACTACTAAATAGATTTTTTTTTTTGGATTTCGTTGTTTTTGTGTCTATTACTTCGAAAGTAGCTGCTTCAACTTCCCATCAAATTTTTGATATTCCTTTTTATTGATTGACATCTTCTTGAGGTATCCAATGCTAAAAACCTTAAAGTTTAGACTTATGGAGTTAAGATTCAAAATTCGTCTGACGTTAACTGTGCTTGAATTTAGGTGTGGAGAATGCAGAACCGGACTTGAAAAACTCACAGGTGACAGTGAAAGGTGTGTTTGAGGCAACAAAACTGGTGGAATATGTTAGCAAAAGGACTGGAAAACGGGCAGTTATTGTGAAAGTAGAACCTGAAAAGAAAGCGGAGGAGGAGGCGAAGCCCAAGGAAGATCAAAAGGAAGAGAAGAAA</genome_strand>
        <mrna_strand>GAAAGGGGAAAAAGCAGATCCGTTGAAGGTATTGGAGAGAATCCAGAAAAAGAGTCATCGTCAAGTTGAGCTTCTCTCACCAATCCCAAAACCACCGGAGCCGGCGGCTGAAGAACCTAAGAAACCGGAGGAAAAAGAAGCCGTTAAACCCGATGAGAAAAAAGAGGAG.............................................................................................CCTCAGGTCATTACAGTAGTTCTGAAAGTTCACATGCATTGTGAGGCTTGTGCACAAGAAATCAAAAGACGTATACAGAAAATGAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGGAGAATGCAGAACCGGACTTGAAAAACTCACAGGTGACAGTGAAAGGTGTGTTTGAGGCAACAAAACTGGTGGAATATGTTAGCAAAAGGACTGGAAAACGGGCAGTTATTGTGAAAGTAGAACCTGAAAAGAAAGCGGAGGAGGAGGCGAAGCCCAAGGAAGATCAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E227356" ref_strand="+" ref_description="SGN-E227356 [cLEL-30-N5](-)">
      <seq>aaggggaaaaagcagatccgttgaaggtattggagagaatacagaaaaagagtcatcgtcaagttgagcttctctcaccaatcccaaaaccaccggagccggcggctgaagaacctaagaaaccggaggaaaaagaagccgttaaacccgatgagaaaaaagaggagcctcaggtcattacagtagttctgaaagttcacatgcattgtgaggcttgtgcacaagaaatcaaaagacgtatacagaaaatgaaaggtgtggagaatgcagaaccggacttgaaaaactcacaggtgacagtgaaaggtgtgtttgaggcaacaaaactggtggaatatgttagcaaaaggactggaaaacgggcagttattgtgaaagtagaacctgaaaagaaagcggaggaggaggcgaagcccaaggaagatcaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0113N10.1" temp_strand="+" temp_description="C06SLm0113N10.1  AC219227.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0113N10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="105776" stop="107564"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106076" g_stop="106242" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="167" r_length="167" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106243" i_stop="106335" i_length="93">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106336" g_stop="106423" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="255" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106424" i_stop="107075" i_length="652">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="107076" g_stop="107264" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="444" r_length="189" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0113N10.1" gen_strand="+" ref_id="SGN-E227356" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>444</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0113N10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E227356" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106076" e_stop="106242"/>
          <exon e_start="106336" e_stop="106423"/>
          <exon e_start="107076" e_stop="107264"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGGGAAAAAGCAGATCCGTTGAAGGTATTGGAGAGAATACAGAAAAAGAGTCATCGTCAAGTTGAGCTTCTCTCACCAATCCCAAAACCACCGGAGCCGGCGGCTGAAGAACCTAAGAAACCGGAGGAAAAAGAAGCCGTTAAACCCGATGAGAAAAAAGAGGAGGTATATTTATTTATTTTATTTATTTCTCTCACTTTATTTGTTTTTAATGTAAAAGTCATATATGCAAATGGTTTTCTATGTTTGTTTGTGCAGCCTCAGGTCATTACAGTAGTTCTGAAAGTTCACATGCATTGTGAGGCTTGTGCACAAGAAATCAAAAGACGTATACAGAAAATGAAAGGCAAGATTATTTAAAATTTTGGTTTTAATTTTAATTATTTTCATCTCTTTTTGCTTAATTAATTTACTACACCCTATTTTGCTTTCTGGTTTTGTGTTTGTTACACTTTTCAGCTGTATTTGTTGAAGAAAGTTTTTTTTTCTCCTTTTTGGATCTCTAAATTAGCATTGGATACTTGAGGATTCTATATTTTATATATCACCTTTCACTATCTAACATTTTTTATATTAGTCAGTAGGGAATAGAATATTCAATTCTTAATACGATTCTCTTAAAATTCTTCAATGTGTTAGTTTAATTCAAATCACATGTCTTCCAGTACTAAATATATTCACTTAATAAACTATTGATTTGAATCTTTGAAACCAATTTCTAGTATTGACTGTTAGGTTTCATCAAAAGTTGCAAGTAACTTAAGGAAATTAGTTGTGCATATGGAGTCTTCCACTACTAAATAGATTTTTTTTTTTGGATTTCGTTGTTTTTGTGTCTATTACTTCGAAAGTAGCTGCTTCAACTTCCCATCAAATTTTTGATATTCCTTTTTATTGATTGACATCTTCTTGAGGTATCCAATGCTAAAAACCTTAAAGTTTAGACTTATGGAGTTAAGATTCAAAATTCGTCTGACGTTAACTGTGCTTGAATTTAGGTGTGGAGAATGCAGAACCGGACTTGAAAAACTCACAGGTGACAGTGAAAGGTGTGTTTGAGGCAACAAAACTGGTGGAATATGTTAGCAAAAGGACTGGAAAACGGGCAGTTATTGTGAAAGTAGAACCTGAAAAGAAAGCGGAGGAGGAGGCGAAGCCCAAGGAAGATCAAAAGGAAGAGAAGAAAA</genome_strand>
        <mrna_strand>AAGGGGAAAAAGCAGATCCGTTGAAGGTATTGGAGAGAATACAGAAAAAGAGTCATCGTCAAGTTGAGCTTCTCTCACCAATCCCAAAACCACCGGAGCCGGCGGCTGAAGAACCTAAGAAACCGGAGGAAAAAGAAGCCGTTAAACCCGATGAGAAAAAAGAGGAG.............................................................................................CCTCAGGTCATTACAGTAGTTCTGAAAGTTCACATGCATTGTGAGGCTTGTGCACAAGAAATCAAAAGACGTATACAGAAAATGAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGGAGAATGCAGAACCGGACTTGAAAAACTCACAGGTGACAGTGAAAGGTGTGTTTGAGGCAACAAAACTGGTGGAATATGTTAGCAAAAGGACTGGAAAACGGGCAGTTATTGTGAAAGTAGAACCTGAAAAGAAAGCGGAGGAGGAGGCGAAGCCCAAGGAAGATCAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E217336" ref_strand="+" ref_description="SGN-E217336 [cLEL-21-M13](-)">
      <seq>aggggaaaaagcagatccgttgaaggtattggagagaatccagaaaaagagtcatcgtcaagttgagcttctctcaccaatcccaaaaccaccggaccggcggctgaagaacctaagaaaccggaggaaaaagaagccgttaaacccgatgagaaaaaagaggagcctcaggtcattacagtagttctgaaagttcacatgcattgtgaggcttgtgcacaagaaatcaaaagacgtatacagaaaatgaaaggtgtggagaatgcagaaccggacttgaaaaactcacaggtgacagtgaaaggtgtgtttgaggcaacaaaactggtggaatatgttagcaaaaggactggaaaacgggcagttattgtgaaagtagaacctgaaaagaaagcggaggaggaggcgaagcccaaggaagatcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0113N10.1" temp_strand="+" temp_description="C06SLm0113N10.1  AC219227.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0113N10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="105777" stop="107564"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106077" g_stop="106242" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="165" r_length="165" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106243" i_stop="106335" i_length="93">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106336" g_stop="106423" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="253" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106424" i_stop="107075" i_length="652">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="107076" g_stop="107263" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="441" r_length="188" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0113N10.1" gen_strand="+" ref_id="SGN-E217336" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>442</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0113N10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E217336" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106077" e_stop="106242"/>
          <exon e_start="106336" e_stop="106423"/>
          <exon e_start="107076" e_stop="107263"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGGGAAAAAGCAGATCCGTTGAAGGTATTGGAGAGAATACAGAAAAAGAGTCATCGTCAAGTTGAGCTTCTCTCACCAATCCCAAAACCACCGGAGCCGGCGGCTGAAGAACCTAAGAAACCGGAGGAAAAAGAAGCCGTTAAACCCGATGAGAAAAAAGAGGAGGTATATTTATTTATTTTATTTATTTCTCTCACTTTATTTGTTTTTAATGTAAAAGTCATATATGCAAATGGTTTTCTATGTTTGTTTGTGCAGCCTCAGGTCATTACAGTAGTTCTGAAAGTTCACATGCATTGTGAGGCTTGTGCACAAGAAATCAAAAGACGTATACAGAAAATGAAAGGCAAGATTATTTAAAATTTTGGTTTTAATTTTAATTATTTTCATCTCTTTTTGCTTAATTAATTTACTACACCCTATTTTGCTTTCTGGTTTTGTGTTTGTTACACTTTTCAGCTGTATTTGTTGAAGAAAGTTTTTTTTTCTCCTTTTTGGATCTCTAAATTAGCATTGGATACTTGAGGATTCTATATTTTATATATCACCTTTCACTATCTAACATTTTTTATATTAGTCAGTAGGGAATAGAATATTCAATTCTTAATACGATTCTCTTAAAATTCTTCAATGTGTTAGTTTAATTCAAATCACATGTCTTCCAGTACTAAATATATTCACTTAATAAACTATTGATTTGAATCTTTGAAACCAATTTCTAGTATTGACTGTTAGGTTTCATCAAAAGTTGCAAGTAACTTAAGGAAATTAGTTGTGCATATGGAGTCTTCCACTACTAAATAGATTTTTTTTTTTGGATTTCGTTGTTTTTGTGTCTATTACTTCGAAAGTAGCTGCTTCAACTTCCCATCAAATTTTTGATATTCCTTTTTATTGATTGACATCTTCTTGAGGTATCCAATGCTAAAAACCTTAAAGTTTAGACTTATGGAGTTAAGATTCAAAATTCGTCTGACGTTAACTGTGCTTGAATTTAGGTGTGGAGAATGCAGAACCGGACTTGAAAAACTCACAGGTGACAGTGAAAGGTGTGTTTGAGGCAACAAAACTGGTGGAATATGTTAGCAAAAGGACTGGAAAACGGGCAGTTATTGTGAAAGTAGAACCTGAAAAGAAAGCGGAGGAGGAGGCGAAGCCCAAGGAAGATCAAAAGGAAGAGAAGAAA</genome_strand>
        <mrna_strand>AGGGGAAAAAGCAGATCCGTTGAAGGTATTGGAGAGAATCCAGAAAAAGAGTCATCGTCAAGTTGAGCTTCTCTCACCAATCCCAAAACCACCGGA-CCGGCGGCTGAAGAACCTAAGAAACCGGAGGAAAAAGAAGCCGTTAAACCCGATGAGAAAAAAGAGGAG.............................................................................................CCTCAGGTCATTACAGTAGTTCTGAAAGTTCACATGCATTGTGAGGCTTGTGCACAAGAAATCAAAAGACGTATACAGAAAATGAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGGAGAATGCAGAACCGGACTTGAAAAACTCACAGGTGACAGTGAAAGGTGTGTTTGAGGCAACAAAACTGGTGGAATATGTTAGCAAAAGGACTGGAAAACGGGCAGTTATTGTGAAAGTAGAACCTGAAAAGAAAGCGGAGGAGGAGGCGAAGCCCAAGGAAGATCAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E227458" ref_strand="+" ref_description="SGN-E227458 [cLEL-30-E5](-)">
      <seq>ggggaaaaagcagatccgttgaaggtattggagagaatacagaaaaagagtcatcgtcaagttgagcttctctcaccaatcccaaaaccaccggagccggcggctgaagaacctaagaaaccggaggaaaaagaagccgttaaacccgatgagaaaaaagaggagcctcaggtcattacagtagttctgaaagttcacatgcattgtgaggcttgtgcacaagaaatcaaaagacgtatacagaaaatgaaaggtgtggagaatgcagaaccggacttgaaaaactcacaggtgacagtgaaaggtgtgtttgaggcaacaaaactggtggaatatgttagcaaaaggactggaaaacgggcagttattgtgaaagtagaacctgaaaagaaagcggaggaggaggcgaagcccaaggaagatcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0113N10.1" temp_strand="+" temp_description="C06SLm0113N10.1  AC219227.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0113N10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="105778" stop="107564"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106078" g_stop="106242" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="165" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106243" i_stop="106335" i_length="93">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106336" g_stop="106423" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="253" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106424" i_stop="107075" i_length="652">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="107076" g_stop="107263" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="441" r_length="188" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0113N10.1" gen_strand="+" ref_id="SGN-E227458" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>441</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0113N10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E227458" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106078" e_stop="106242"/>
          <exon e_start="106336" e_stop="106423"/>
          <exon e_start="107076" e_stop="107263"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGGAAAAAGCAGATCCGTTGAAGGTATTGGAGAGAATACAGAAAAAGAGTCATCGTCAAGTTGAGCTTCTCTCACCAATCCCAAAACCACCGGAGCCGGCGGCTGAAGAACCTAAGAAACCGGAGGAAAAAGAAGCCGTTAAACCCGATGAGAAAAAAGAGGAGGTATATTTATTTATTTTATTTATTTCTCTCACTTTATTTGTTTTTAATGTAAAAGTCATATATGCAAATGGTTTTCTATGTTTGTTTGTGCAGCCTCAGGTCATTACAGTAGTTCTGAAAGTTCACATGCATTGTGAGGCTTGTGCACAAGAAATCAAAAGACGTATACAGAAAATGAAAGGCAAGATTATTTAAAATTTTGGTTTTAATTTTAATTATTTTCATCTCTTTTTGCTTAATTAATTTACTACACCCTATTTTGCTTTCTGGTTTTGTGTTTGTTACACTTTTCAGCTGTATTTGTTGAAGAAAGTTTTTTTTTCTCCTTTTTGGATCTCTAAATTAGCATTGGATACTTGAGGATTCTATATTTTATATATCACCTTTCACTATCTAACATTTTTTATATTAGTCAGTAGGGAATAGAATATTCAATTCTTAATACGATTCTCTTAAAATTCTTCAATGTGTTAGTTTAATTCAAATCACATGTCTTCCAGTACTAAATATATTCACTTAATAAACTATTGATTTGAATCTTTGAAACCAATTTCTAGTATTGACTGTTAGGTTTCATCAAAAGTTGCAAGTAACTTAAGGAAATTAGTTGTGCATATGGAGTCTTCCACTACTAAATAGATTTTTTTTTTTGGATTTCGTTGTTTTTGTGTCTATTACTTCGAAAGTAGCTGCTTCAACTTCCCATCAAATTTTTGATATTCCTTTTTATTGATTGACATCTTCTTGAGGTATCCAATGCTAAAAACCTTAAAGTTTAGACTTATGGAGTTAAGATTCAAAATTCGTCTGACGTTAACTGTGCTTGAATTTAGGTGTGGAGAATGCAGAACCGGACTTGAAAAACTCACAGGTGACAGTGAAAGGTGTGTTTGAGGCAACAAAACTGGTGGAATATGTTAGCAAAAGGACTGGAAAACGGGCAGTTATTGTGAAAGTAGAACCTGAAAAGAAAGCGGAGGAGGAGGCGAAGCCCAAGGAAGATCAAAAGGAAGAGAAGAAA</genome_strand>
        <mrna_strand>GGGGAAAAAGCAGATCCGTTGAAGGTATTGGAGAGAATACAGAAAAAGAGTCATCGTCAAGTTGAGCTTCTCTCACCAATCCCAAAACCACCGGAGCCGGCGGCTGAAGAACCTAAGAAACCGGAGGAAAAAGAAGCCGTTAAACCCGATGAGAAAAAAGAGGAG.............................................................................................CCTCAGGTCATTACAGTAGTTCTGAAAGTTCACATGCATTGTGAGGCTTGTGCACAAGAAATCAAAAGACGTATACAGAAAATGAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGGAGAATGCAGAACCGGACTTGAAAAACTCACAGGTGACAGTGAAAGGTGTGTTTGAGGCAACAAAACTGGTGGAATATGTTAGCAAAAGGACTGGAAAACGGGCAGTTATTGTGAAAGTAGAACCTGAAAAGAAAGCGGAGGAGGAGGCGAAGCCCAAGGAAGATCAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E228625" ref_strand="+" ref_description="SGN-E228625 [cLEL-29-O18](-)">
      <seq>ggtattggagagaatacagaaaaagagtcatcgtcaagttgagcttctctcanccaatccccaaaaccaccggagccggcggctgaagaacctaagaaaccggagganaaaagaagccgttaaacccgatgagaaaaaagaggagcctcaggtcattacagtagttctgaaagttcacatgcattgtgaggcttgtgcacaagaaatcaaaagacgtatacagaaaatgaaaggtgtggagaatgcagaaccggacttgaaaaactcacaggtgacagtgaaaggtgtgtttgaggcaacaaaactggtggaatatgttagcaaaaggactggaaaacgggcagttattgtgaaagtagaacctgaaaagaaagcggaggaggaggcgaagcccaaggaagatcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0113N10.1" temp_strand="+" temp_description="C06SLm0113N10.1  AC219227.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0113N10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="105801" stop="107564"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106101" g_stop="106242" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="145" r_length="145" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106243" i_stop="106335" i_length="93">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106336" g_stop="106423" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="233" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106424" i_stop="107075" i_length="652">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="107076" g_stop="107263" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="421" r_length="188" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0113N10.1" gen_strand="+" ref_id="SGN-E228625" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>418</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0113N10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E228625" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106101" e_stop="106242"/>
          <exon e_start="106336" e_stop="106423"/>
          <exon e_start="107076" e_stop="107263"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTATTGGAGAGAATACAGAAAAAGAGTCATCGTCAAGTTGAGCTTCTCTCA-CCAAT-CCCAAAACCACCGGAGCCGGCGGCTGAAGAACCTAAGAAACCGGAGGA-AAAAGAAGCCGTTAAACCCGATGAGAAAAAAGAGGAGGTATATTTATTTATTTTATTTATTTCTCTCACTTTATTTGTTTTTAATGTAAAAGTCATATATGCAAATGGTTTTCTATGTTTGTTTGTGCAGCCTCAGGTCATTACAGTAGTTCTGAAAGTTCACATGCATTGTGAGGCTTGTGCACAAGAAATCAAAAGACGTATACAGAAAATGAAAGGCAAGATTATTTAAAATTTTGGTTTTAATTTTAATTATTTTCATCTCTTTTTGCTTAATTAATTTACTACACCCTATTTTGCTTTCTGGTTTTGTGTTTGTTACACTTTTCAGCTGTATTTGTTGAAGAAAGTTTTTTTTTCTCCTTTTTGGATCTCTAAATTAGCATTGGATACTTGAGGATTCTATATTTTATATATCACCTTTCACTATCTAACATTTTTTATATTAGTCAGTAGGGAATAGAATATTCAATTCTTAATACGATTCTCTTAAAATTCTTCAATGTGTTAGTTTAATTCAAATCACATGTCTTCCAGTACTAAATATATTCACTTAATAAACTATTGATTTGAATCTTTGAAACCAATTTCTAGTATTGACTGTTAGGTTTCATCAAAAGTTGCAAGTAACTTAAGGAAATTAGTTGTGCATATGGAGTCTTCCACTACTAAATAGATTTTTTTTTTTGGATTTCGTTGTTTTTGTGTCTATTACTTCGAAAGTAGCTGCTTCAACTTCCCATCAAATTTTTGATATTCCTTTTTATTGATTGACATCTTCTTGAGGTATCCAATGCTAAAAACCTTAAAGTTTAGACTTATGGAGTTAAGATTCAAAATTCGTCTGACGTTAACTGTGCTTGAATTTAGGTGTGGAGAATGCAGAACCGGACTTGAAAAACTCACAGGTGACAGTGAAAGGTGTGTTTGAGGCAACAAAACTGGTGGAATATGTTAGCAAAAGGACTGGAAAACGGGCAGTTATTGTGAAAGTAGAACCTGAAAAGAAAGCGGAGGAGGAGGCGAAGCCCAAGGAAGATCAAAAGGAAGAGAAGAAA</genome_strand>
        <mrna_strand>GGTATTGGAGAGAATACAGAAAAAGAGTCATCGTCAAGTTGAGCTTCTCTCANCCAATCCCCAAAACCACCGGAGCCGGCGGCTGAAGAACCTAAGAAACCGGAGGANAAAAGAAGCCGTTAAACCCGATGAGAAAAAAGAGGAG.............................................................................................CCTCAGGTCATTACAGTAGTTCTGAAAGTTCACATGCATTGTGAGGCTTGTGCACAAGAAATCAAAAGACGTATACAGAAAATGAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGGAGAATGCAGAACCGGACTTGAAAAACTCACAGGTGACAGTGAAAGGTGTGTTTGAGGCAACAAAACTGGTGGAATATGTTAGCAAAAGGACTGGAAAACGGGCAGTTATTGTGAAAGTAGAACCTGAAAAGAAAGCGGAGGAGGAGGCGAAGCCCAAGGAAGATCAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E220244" ref_strand="+" ref_description="SGN-E220244 [cLEL-12-B18](-)">
      <seq>ccaaaaccaccggagccggcggctgaagaacctaagaaaccggaggaaaaagaagccgttaaacccgatgagaaaaaagaggagcctcaggtcattacagtagttctgaaagttcacatgcattgtgaggcttgtgcacaagaaatcaaaagacgtatacagaaaatgaaaggtgtggagaatgcagaaccggacttgaaaaactcacaggtgacagtgaaaggtgtgtttgaggcaacaaaactggtggaatatgttagcaaaaggactggaaaacgggcagttattgtgaaagtagaacctgaaaagaaagcgcagcaggaggcgaagcccaaggaagatcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0113N10.1" temp_strand="+" temp_description="C06SLm0113N10.1  AC219227.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0113N10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="105859" stop="107564"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106159" g_stop="106242" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="84" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106243" i_stop="106335" i_length="93">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106336" g_stop="106423" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="172" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106424" i_stop="107075" i_length="652">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="107076" g_stop="107263" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="360" r_length="188" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0113N10.1" gen_strand="+" ref_id="SGN-E220244" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>360</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0113N10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E220244" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106159" e_stop="106242"/>
          <exon e_start="106336" e_stop="106423"/>
          <exon e_start="107076" e_stop="107263"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAAACCACCGGAGCCGGCGGCTGAAGAACCTAAGAAACCGGAGGAAAAAGAAGCCGTTAAACCCGATGAGAAAAAAGAGGAGGTATATTTATTTATTTTATTTATTTCTCTCACTTTATTTGTTTTTAATGTAAAAGTCATATATGCAAATGGTTTTCTATGTTTGTTTGTGCAGCCTCAGGTCATTACAGTAGTTCTGAAAGTTCACATGCATTGTGAGGCTTGTGCACAAGAAATCAAAAGACGTATACAGAAAATGAAAGGCAAGATTATTTAAAATTTTGGTTTTAATTTTAATTATTTTCATCTCTTTTTGCTTAATTAATTTACTACACCCTATTTTGCTTTCTGGTTTTGTGTTTGTTACACTTTTCAGCTGTATTTGTTGAAGAAAGTTTTTTTTTCTCCTTTTTGGATCTCTAAATTAGCATTGGATACTTGAGGATTCTATATTTTATATATCACCTTTCACTATCTAACATTTTTTATATTAGTCAGTAGGGAATAGAATATTCAATTCTTAATACGATTCTCTTAAAATTCTTCAATGTGTTAGTTTAATTCAAATCACATGTCTTCCAGTACTAAATATATTCACTTAATAAACTATTGATTTGAATCTTTGAAACCAATTTCTAGTATTGACTGTTAGGTTTCATCAAAAGTTGCAAGTAACTTAAGGAAATTAGTTGTGCATATGGAGTCTTCCACTACTAAATAGATTTTTTTTTTTGGATTTCGTTGTTTTTGTGTCTATTACTTCGAAAGTAGCTGCTTCAACTTCCCATCAAATTTTTGATATTCCTTTTTATTGATTGACATCTTCTTGAGGTATCCAATGCTAAAAACCTTAAAGTTTAGACTTATGGAGTTAAGATTCAAAATTCGTCTGACGTTAACTGTGCTTGAATTTAGGTGTGGAGAATGCAGAACCGGACTTGAAAAACTCACAGGTGACAGTGAAAGGTGTGTTTGAGGCAACAAAACTGGTGGAATATGTTAGCAAAAGGACTGGAAAACGGGCAGTTATTGTGAAAGTAGAACCTGAAAAGAAAGCGGAGGAGGAGGCGAAGCCCAAGGAAGATCAAAAGGAAGAGAAGAAA</genome_strand>
        <mrna_strand>CCAAAACCACCGGAGCCGGCGGCTGAAGAACCTAAGAAACCGGAGGAAAAAGAAGCCGTTAAACCCGATGAGAAAAAAGAGGAG.............................................................................................CCTCAGGTCATTACAGTAGTTCTGAAAGTTCACATGCATTGTGAGGCTTGTGCACAAGAAATCAAAAGACGTATACAGAAAATGAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGGAGAATGCAGAACCGGACTTGAAAAACTCACAGGTGACAGTGAAAGGTGTGTTTGAGGCAACAAAACTGGTGGAATATGTTAGCAAAAGGACTGGAAAACGGGCAGTTATTGTGAAAGTAGAACCTGAAAAGAAAGCGCAGCAGGAGGCGAAGCCCAAGGAAGATCAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E220670" ref_strand="+" ref_description="SGN-E220670 [cLEL-12-B18](-)">
      <seq>gaagaacctaagaaaccggaggaaaaagaagccgttaaacccgatgagaaaaaagaggagcctcagggtcattacagtagttctgaaagttcacatgcattgtgaggcttgtgcacaagaaatcaaaagacgtatacagaaaatgaaaggtgtggagaatgcagaaccggacttgaaaaactcacaggtgacagtgaaaggtgtgtttgaggcaacaaaactggtggaatatgttagcaaaaggactggaaaacgggcagttattgtgaaagtagaacctgaaaagaaagcggaggaggaggcgaagcccaaggaagatcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0113N10.1" temp_strand="+" temp_description="C06SLm0113N10.1  AC219227.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0113N10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="105883" stop="107564"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106183" g_stop="106242" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106243" i_stop="106335" i_length="93">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106336" g_stop="106423" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="149" r_length="89" r_score="0.977"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106424" i_stop="107075" i_length="652">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="107076" g_stop="107263" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="337" r_length="188" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0113N10.1" gen_strand="+" ref_id="SGN-E220670" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>336</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0113N10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E220670" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106183" e_stop="106242"/>
          <exon e_start="106336" e_stop="106423"/>
          <exon e_start="107076" e_stop="107263"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGAACCTAAGAAACCGGAGGAAAAAGAAGCCGTTAAACCCGATGAGAAAAAAGAGGAGGTATATTTATTTATTTTATTTATTTCTCTCACTTTATTTGTTTTTAATGTAAAAGTCATATATGCAAATGGTTTTCTATGTTTGTTTGTGCAGCCTCAGG-TCATTACAGTAGTTCTGAAAGTTCACATGCATTGTGAGGCTTGTGCACAAGAAATCAAAAGACGTATACAGAAAATGAAAGGCAAGATTATTTAAAATTTTGGTTTTAATTTTAATTATTTTCATCTCTTTTTGCTTAATTAATTTACTACACCCTATTTTGCTTTCTGGTTTTGTGTTTGTTACACTTTTCAGCTGTATTTGTTGAAGAAAGTTTTTTTTTCTCCTTTTTGGATCTCTAAATTAGCATTGGATACTTGAGGATTCTATATTTTATATATCACCTTTCACTATCTAACATTTTTTATATTAGTCAGTAGGGAATAGAATATTCAATTCTTAATACGATTCTCTTAAAATTCTTCAATGTGTTAGTTTAATTCAAATCACATGTCTTCCAGTACTAAATATATTCACTTAATAAACTATTGATTTGAATCTTTGAAACCAATTTCTAGTATTGACTGTTAGGTTTCATCAAAAGTTGCAAGTAACTTAAGGAAATTAGTTGTGCATATGGAGTCTTCCACTACTAAATAGATTTTTTTTTTTGGATTTCGTTGTTTTTGTGTCTATTACTTCGAAAGTAGCTGCTTCAACTTCCCATCAAATTTTTGATATTCCTTTTTATTGATTGACATCTTCTTGAGGTATCCAATGCTAAAAACCTTAAAGTTTAGACTTATGGAGTTAAGATTCAAAATTCGTCTGACGTTAACTGTGCTTGAATTTAGGTGTGGAGAATGCAGAACCGGACTTGAAAAACTCACAGGTGACAGTGAAAGGTGTGTTTGAGGCAACAAAACTGGTGGAATATGTTAGCAAAAGGACTGGAAAACGGGCAGTTATTGTGAAAGTAGAACCTGAAAAGAAAGCGGAGGAGGAGGCGAAGCCCAAGGAAGATCAAAAGGAAGAGAAGAAA</genome_strand>
        <mrna_strand>GAAGAACCTAAGAAACCGGAGGAAAAAGAAGCCGTTAAACCCGATGAGAAAAAAGAGGAG.............................................................................................CCTCAGGGTCATTACAGTAGTTCTGAAAGTTCACATGCATTGTGAGGCTTGTGCACAAGAAATCAAAAGACGTATACAGAAAATGAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGGAGAATGCAGAACCGGACTTGAAAAACTCACAGGTGACAGTGAAAGGTGTGTTTGAGGCAACAAAACTGGTGGAATATGTTAGCAAAAGGACTGGAAAACGGGCAGTTATTGTGAAAGTAGAACCTGAAAAGAAAGCGGAGGAGGAGGCGAAGCCCAAGGAAGATCAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E582694" ref_strand="+" ref_description="SGN-E582694 [8327]">
      <seq>gattacagtagttctgaaagttcacatgcattgtgaggcttgtgcacaagaaatcaaaagacgtatacagaaaatgaaaggtgtggagaatgcagaaccggacttgaaaaactcacaagtgacagtgaaaggtgtgtttgaggcaacaaaactggtggaatatgtaagcaaaaggactggaaaacgggcagttattgtgaaagtagaacctgaacagaaagcgaaggaggaggctaagcccaaagaagatcaaaaggaagagaagaaaaccgatgacaaagaagcgaagaaagttgaagaaggtgacaacaaagaggagaagaaggaagaagcagccgcaccagctaaggaagaagccgtagtagcagctgcaccagctaaggaagaagctgtacaaaacgacgtcgatccaatagtagatgtgaagaagaatgagttttactactatcaccatcctcagaatcatcagctgtataataatccacagaggcttgcacatgaaatgtttgcgtacctccacctcctcagattttcagcgatgaaaatccgaatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0113N10.1" temp_strand="+" temp_description="C06SLm0113N10.1  AC219227.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0113N10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="106045" stop="107853"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106344" g_stop="106423" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106424" i_stop="107075" i_length="652">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107076" g_stop="107553" g_length="478"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="554" r_length="474" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0113N10.1" gen_strand="+" ref_id="SGN-E582694" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0113N10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E582694" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106344" e_stop="106423"/>
          <exon e_start="107076" e_stop="107553"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTACAGTAGTTCTGAAAGTTCACATGCATTGTGAGGCTTGTGCACAAGAAATCAAAAGACGTATACAGAAAATGAAAGGCAAGATTATTTAAAATTTTGGTTTTAATTTTAATTATTTTCATCTCTTTTTGCTTAATTAATTTACTACACCCTATTTTGCTTTCTGGTTTTGTGTTTGTTACACTTTTCAGCTGTATTTGTTGAAGAAAGTTTTTTTTTCTCCTTTTTGGATCTCTAAATTAGCATTGGATACTTGAGGATTCTATATTTTATATATCACCTTTCACTATCTAACATTTTTTATATTAGTCAGTAGGGAATAGAATATTCAATTCTTAATACGATTCTCTTAAAATTCTTCAATGTGTTAGTTTAATTCAAATCACATGTCTTCCAGTACTAAATATATTCACTTAATAAACTATTGATTTGAATCTTTGAAACCAATTTCTAGTATTGACTGTTAGGTTTCATCAAAAGTTGCAAGTAACTTAAGGAAATTAGTTGTGCATATGGAGTCTTCCACTACTAAATAGATTTTTTTTTTTGGATTTCGTTGTTTTTGTGTCTATTACTTCGAAAGTAGCTGCTTCAACTTCCCATCAAATTTTTGATATTCCTTTTTATTGATTGACATCTTCTTGAGGTATCCAATGCTAAAAACCTTAAAGTTTAGACTTATGGAGTTAAGATTCAAAATTCGTCTGACGTTAACTGTGCTTGAATTTAGGTGTGGAGAATGCAGAACCGGACTTGAAAAACTCACAGGTGACAGTGAAAGGTGTGTTTGAGGCAACAAAACTGGTGGAATATGTTAGCAAAAGGACTGGAAAACGGGCAGTTATTGTGAAAGTAGAACCTGAAAAGAAAGCGGAGGAGGAGGCGAAGCCCAAGGAAGATCAAAAGGAAGAGAAGAAAACCGATGAAAAAGAAGCGAAGAAAGTTGAAGGTGACGACAAAGAGGAGAAGAAGGAAGAAGCAGCAGCTGCTGCACCAGCTAAGGAAGAAGCCGTAGTAGCAGCAGCACCAGCTAAGGAAGAAGCTGTACAAAACGACGTCGATCCAATAGTAGATGTGAAGAAGAATGAGTTTTACTACTATCACCATCCTCAGAATCATCAGCTGTACAATAATCCACAGAGACTTGCACATGAAATGTTTGCGTACCCTCCACCTCCGCAGATTTTCAGCGATGAAAATCCGAATGC</genome_strand>
        <mrna_strand>GATTACAGTAGTTCTGAAAGTTCACATGCATTGTGAGGCTTGTGCACAAGAAATCAAAAGACGTATACAGAAAATGAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGGAGAATGCAGAACCGGACTTGAAAAACTCACAAGTGACAGTGAAAGGTGTGTTTGAGGCAACAAAACTGGTGGAATATGTAAGCAAAAGGACTGGAAAACGGGCAGTTATTGTGAAAGTAGAACCTGAACAGAAAGCGAAGGAGGAGGCTAAGCCCAAAGAAGATCAAAAGGAAGAGAAGAAAACCGATGACAAAGAAGCGAAGAAAGTTGAAGAAGGTGACAACAAAGAGGAGAAGAAGGAAGAAGCAGC--C-GCACCAGCTAAGGAAGAAGCCGTAGTAGCAGCTGCACCAGCTAAGGAAGAAGCTGTACAAAACGACGTCGATCCAATAGTAGATGTGAAGAAGAATGAGTTTTACTACTATCACCATCCTCAGAATCATCAGCTGTATAATAATCCACAGAGGCTTGCACATGAAATGTTTGCGTA-CCTCCACCTCCTCAGATTTTCAGCGATGAAAATCCGAATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E591643" ref_strand="+" ref_description="SGN-E591643 [45360]">
      <seq>tgtagttctgaaagttcacatgcattgtgaggcttgtgcacaagaaatcaaaagacgtatacagaaaatgaaaggtgtggagaatgcagaaccggacttgaaaaactcacaagtgacagtgaaaggtgtgtttgaggcaacaaaactggtggaatatgtaagcaaaaggactggaaaacgggcagttattgtgaaagtagaacctgaacagaaagcgaaggaggaggctaagcccaaagaagatcaaaaggaagagaagaaaaccgatgacaaagaagcgaagaaagttgaagaaggtgacaacaaagaggagaagaaggaagaagcagccgcaccagctaaggaagaagccgtagtagcagctgcaccagctaaggaagaagctgtacaaaacgacgtcgatccaatagtagatgtgaagaagaatgagtttcactactatcaccatcctcagaatcatcagctgtataataatccacagaggcttgcacatgaaatgtttgcgtacccctccactcctcagattttcagcgatgaaaatccgaatgcatgttccgtgatgtaaatttggagggacgtgaggggtaaaaagggaaaatgtacgtccaaccccgtcttgtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0113N10.1" temp_strand="+" temp_description="C06SLm0113N10.1  AC219227.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0113N10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="106051" stop="107923"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106350" g_stop="106423" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106424" i_stop="107075" i_length="652">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107076" g_stop="107624" g_length="549"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="622" r_length="548" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0113N10.1" gen_strand="+" ref_id="SGN-E591643" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>623</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0113N10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E591643" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106350" e_stop="106423"/>
          <exon e_start="107076" e_stop="107624"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTAGTTCTGAAAGTTCACATGCATTGTGAGGCTTGTGCACAAGAAATCAAAAGACGTATACAGAAAATGAAAGGCAAGATTATTTAAAATTTTGGTTTTAATTTTAATTATTTTCATCTCTTTTTGCTTAATTAATTTACTACACCCTATTTTGCTTTCTGGTTTTGTGTTTGTTACACTTTTCAGCTGTATTTGTTGAAGAAAGTTTTTTTTTCTCCTTTTTGGATCTCTAAATTAGCATTGGATACTTGAGGATTCTATATTTTATATATCACCTTTCACTATCTAACATTTTTTATATTAGTCAGTAGGGAATAGAATATTCAATTCTTAATACGATTCTCTTAAAATTCTTCAATGTGTTAGTTTAATTCAAATCACATGTCTTCCAGTACTAAATATATTCACTTAATAAACTATTGATTTGAATCTTTGAAACCAATTTCTAGTATTGACTGTTAGGTTTCATCAAAAGTTGCAAGTAACTTAAGGAAATTAGTTGTGCATATGGAGTCTTCCACTACTAAATAGATTTTTTTTTTTGGATTTCGTTGTTTTTGTGTCTATTACTTCGAAAGTAGCTGCTTCAACTTCCCATCAAATTTTTGATATTCCTTTTTATTGATTGACATCTTCTTGAGGTATCCAATGCTAAAAACCTTAAAGTTTAGACTTATGGAGTTAAGATTCAAAATTCGTCTGACGTTAACTGTGCTTGAATTTAGGTGTGGAGAATGCAGAACCGGACTTGAAAAACTCACAGGTGACAGTGAAAGGTGTGTTTGAGGCAACAAAACTGGTGGAATATGTTAGCAAAAGGACTGGAAAACGGGCAGTTATTGTGAAAGTAGAACCTGAAAAGAAAGCGGAGGAGGAGGCGAAGCCCAAGGAAGATCAAAAGGAAGAGAAGAAAACCGATGAAAAAGAAGCGAAGAAAGTTGAAGGTGACGACAAAGAGGAGAAGAAGGAAGAAGCAGCAGCTGCTGCACCAGCTAAGGAAGAAGCCGTAGTAGCAGCAGCACCAGCTAAGGAAGAAGCTGTACAAAACGACGTCGATCCAATAGTAGATGTGAAGAAGAATGAGTTTTACTACTATCACCATCCTCAGAATCATCAGCTGTACAATAATCCACAGAGACTTGCACATGAAATGTTTGCGTA-CCCTCCACCTCCGCAGATTTTCAGCGATGAAAATCCGAATGCATGTTCCGTGATGTAAATTTGGAGGGATATGAGGGGTAAAAAGGG-CAATGTACGTCCAACCCC-TCTTGTGG</genome_strand>
        <mrna_strand>TGTAGTTCTGAAAGTTCACATGCATTGTGAGGCTTGTGCACAAGAAATCAAAAGACGTATACAGAAAATGAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGGAGAATGCAGAACCGGACTTGAAAAACTCACAAGTGACAGTGAAAGGTGTGTTTGAGGCAACAAAACTGGTGGAATATGTAAGCAAAAGGACTGGAAAACGGGCAGTTATTGTGAAAGTAGAACCTGAACAGAAAGCGAAGGAGGAGGCTAAGCCCAAAGAAGATCAAAAGGAAGAGAAGAAAACCGATGACAAAGAAGCGAAGAAAGTTGAAGAAGGTGACAACAAAGAGGAGAAGAAGGAAGAAGCAGC--C-GCACCAGCTAAGGAAGAAGCCGTAGTAGCAGCTGCACCAGCTAAGGAAGAAGCTGTACAAAACGACGTCGATCCAATAGTAGATGTGAAGAAGAATGAGTTTCACTACTATCACCATCCTCAGAATCATCAGCTGTATAATAATCCACAGAGGCTTGCACATGAAATGTTTGCGTACCCCTCCA-CTCCTCAGATTTTCAGCGATGAAAATCCGAATGCATGTTCCGTGATGTAAATTTGGAGGGACGTGAGGGGTAAAAAGGGAAAATGTACGTCCAACCCCGTCTTGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E217535" ref_strand="+" ref_description="SGN-E217535 [cLEL-21-M1](-)">
      <seq>gcttgtgcacaagaaatcaaaagacgtatccagaaaatgaaaggtgtggagaatgcagacccggactttaaaaactcacaggtgacagtgaaaggtgtgtttgaggcaacaaaactggtggaatatgttagcaaaaggactggaaaacgggcagttattgtgaaagtagaacctgaaaagaaagcggaggaggcggcgaagcccaaggaagcccccaaaaaaaaaaaaaaaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0113N10.1" temp_strand="+" temp_description="C06SLm0113N10.1  AC219227.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0113N10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="106081" stop="107565"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106381" g_stop="106423" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106424" i_stop="107075" i_length="652">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.989" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107076" g_stop="107266" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="234" r_length="191" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0113N10.1" gen_strand="+" ref_id="SGN-E217535" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>234</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0113N10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E217535" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106381" e_stop="106423"/>
          <exon e_start="107076" e_stop="107266"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTGTGCACAAGAAATCAAAAGACGTATACAGAAAATGAAAGGCAAGATTATTTAAAATTTTGGTTTTAATTTTAATTATTTTCATCTCTTTTTGCTTAATTAATTTACTACACCCTATTTTGCTTTCTGGTTTTGTGTTTGTTACACTTTTCAGCTGTATTTGTTGAAGAAAGTTTTTTTTTCTCCTTTTTGGATCTCTAAATTAGCATTGGATACTTGAGGATTCTATATTTTATATATCACCTTTCACTATCTAACATTTTTTATATTAGTCAGTAGGGAATAGAATATTCAATTCTTAATACGATTCTCTTAAAATTCTTCAATGTGTTAGTTTAATTCAAATCACATGTCTTCCAGTACTAAATATATTCACTTAATAAACTATTGATTTGAATCTTTGAAACCAATTTCTAGTATTGACTGTTAGGTTTCATCAAAAGTTGCAAGTAACTTAAGGAAATTAGTTGTGCATATGGAGTCTTCCACTACTAAATAGATTTTTTTTTTTGGATTTCGTTGTTTTTGTGTCTATTACTTCGAAAGTAGCTGCTTCAACTTCCCATCAAATTTTTGATATTCCTTTTTATTGATTGACATCTTCTTGAGGTATCCAATGCTAAAAACCTTAAAGTTTAGACTTATGGAGTTAAGATTCAAAATTCGTCTGACGTTAACTGTGCTTGAATTTAGGTGTGGAGAATGCAGAACCGGACTTGAAAAACTCACAGGTGACAGTGAAAGGTGTGTTTGAGGCAACAAAACTGGTGGAATATGTTAGCAAAAGGACTGGAAAACGGGCAGTTATTGTGAAAGTAGAACCTGAAAAGAAAGCGGAGGAGGAGGCGAAGCCCAAGGAAGATCAAAAGGAAGAGAAGAAAACC</genome_strand>
        <mrna_strand>GCTTGTGCACAAGAAATCAAAAGACGTATCCAGAAAATGAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGGAGAATGCAGACCCGGACTTTAAAAACTCACAGGTGACAGTGAAAGGTGTGTTTGAGGCAACAAAACTGGTGGAATATGTTAGCAAAAGGACTGGAAAACGGGCAGTTATTGTGAAAGTAGAACCTGAAAAGAAAGCGGAGGAGGCGGCGAAGCCCAAGGAAGCCCCCAAAAAAAAAAAAAAAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E584982" ref_strand="-" ref_description="SGN-E584982 [66699]">
      <seq>aagacgtatacagaaaatgaaaggtctggagaatgcagaaccggactttgaaaaactcacaagtgacagtgaaaggtgtgtttgaggcaacaaaactggtggaatatgtaagcaaaaggactggaaaacgggcagttattgtgaaagtagaacctgaacagaaagcgaaggaggaggctaagcccaaagaagatcaaaaggaagagaagaaaaccgatgacaaagaagcgaagaaagttgaagaaggtgacaacaaagaggagaagaaggaagaagcagccgcaccagctaaggaagaagccgtagtagcagctgcaccagctaaggaagaagctgtacaaaacgacgtcgatccaatagtagatgtgaagaagaatgagttttactactatcaccatcctcagaatcatcagctgtataataatccacagaggcttgcacatgaaatgtttgcgtaccctccacctcctcagattttcagcgatgaaaatccgaatgcatgttccgtgatgtaaatttggagggacgtgaggggtaaaaagggaaatgtacgtccaacccctcttgtgctgcgtggttctcttcatgtgaggctttgtcttgggactcgctaagttacaagtgatctgctagacaaatactgtagaattttgtgagtcctttgtactttttttatttgttttggttttctttatgttgttatatactccctatatgtatgatacaataaacagtactatatgaaaattttaaatatcgtacttggaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0113N10.1" temp_strand="+" temp_description="C06SLm0113N10.1  AC219227.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0113N10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="106101" stop="108117"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106401" g_stop="106423" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="23" r_length="23" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106424" i_stop="107075" i_length="652">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.989" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107076" g_stop="107825" g_length="750"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="776" r_length="753" r_score="0.927"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0113N10.1" gen_strand="+" ref_id="SGN-E584982" ref_strand="-">
        <total_alignment_score>0.927</total_alignment_score>
        <cumulative_length_of_scored_exons>773</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0113N10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E584982" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="106401" e_stop="106423"/>
          <exon e_start="107076" e_stop="107825"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGACGTATACAGAAAATGAAAGGCAAGATTATTTAAAATTTTGGTTTTAATTTTAATTATTTTCATCTCTTTTTGCTTAATTAATTTACTACACCCTATTTTGCTTTCTGGTTTTGTGTTTGTTACACTTTTCAGCTGTATTTGTTGAAGAAAGTTTTTTTTTCTCCTTTTTGGATCTCTAAATTAGCATTGGATACTTGAGGATTCTATATTTTATATATCACCTTTCACTATCTAACATTTTTTATATTAGTCAGTAGGGAATAGAATATTCAATTCTTAATACGATTCTCTTAAAATTCTTCAATGTGTTAGTTTAATTCAAATCACATGTCTTCCAGTACTAAATATATTCACTTAATAAACTATTGATTTGAATCTTTGAAACCAATTTCTAGTATTGACTGTTAGGTTTCATCAAAAGTTGCAAGTAACTTAAGGAAATTAGTTGTGCATATGGAGTCTTCCACTACTAAATAGATTTTTTTTTTTGGATTTCGTTGTTTTTGTGTCTATTACTTCGAAAGTAGCTGCTTCAACTTCCCATCAAATTTTTGATATTCCTTTTTATTGATTGACATCTTCTTGAGGTATCCAATGCTAAAAACCTTAAAGTTTAGACTTATGGAGTTAAGATTCAAAATTCGTCTGACGTTAACTGTGCTTGAATTTAGGTGTGGAGAATGCAGAACCGGAC-TTGAAAAACTCACAGGTGACAGTGAAAGGTGTGTTTGAGGCAACAAAACTGGTGGAATATGTTAGCAAAAGGACTGGAAAACGGGCAGTTATTGTGAAAGTAGAACCTGAAAAGAAAGCGGAGGAGGAGGCGAAGCCCAAGGAAGATCAAAAGGAAGAGAAGAAAACCGATGAAAAAGAAGCGAAGAAAGTTGAAGGTGACGACAAAGAGGAGAAGAAGGAAGAAGCAGCAGCTGCTGCACCAGCTAAGGAAGAAGCCGTAGTAGCAGCAGCACCAGCTAAGGAAGAAGCTGTACAAAACGACGTCGATCCAATAGTAGATGTGAAGAAGAATGAGTTTTACTACTATCACCATCCTCAGAATCATCAGCTGTACAATAATCCACAGAGACTTGCACATGAAATGTTTGCGTACCCTCCACCTCCGCAGATTTTCAGCGATGAAAATCCGAATGCATGTTCCGTGATGTAAATTTGGAGGGATATGAGGGGTAAAAAGGGCAATGTACGTCCAACCCCTC-T-TG-TG-GTGGTGCTCTTCATGTGAGTCTTTGTCTTGGGACTCGCTAAGTTACAAGTGATCTACTAGACAAATACTGTAGAATTTTATGAGCCCTCTGTACTTTTTTT-TTTTTTTTGGTCTTCTTTATGTTGTTATATACTCCCTATATGTATGATACAATAAACAGTACTATATGAAAATTTTAAATATTGTACTTGGAACTTCAAAG</genome_strand>
        <mrna_strand>AAGACGTATACAGAAAATGAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTGGAGAATGCAGAACCGGACTTTGAAAAACTCACAAGTGACAGTGAAAGGTGTGTTTGAGGCAACAAAACTGGTGGAATATGTAAGCAAAAGGACTGGAAAACGGGCAGTTATTGTGAAAGTAGAACCTGAACAGAAAGCGAAGGAGGAGGCTAAGCCCAAAGAAGATCAAAAGGAAGAGAAGAAAACCGATGACAAAGAAGCGAAGAAAGTTGAAGAAGGTGACAACAAAGAGGAGAAGAAGGAAGAAGCAGC--C-GCACCAGCTAAGGAAGAAGCCGTAGTAGCAGCTGCACCAGCTAAGGAAGAAGCTGTACAAAACGACGTCGATCCAATAGTAGATGTGAAGAAGAATGAGTTTTACTACTATCACCATCCTCAGAATCATCAGCTGTATAATAATCCACAGAGGCTTGCACATGAAATGTTTGCGTACCCTCCACCTCCTCAGATTTTCAGCGATGAAAATCCGAATGCATGTTCCGTGATGTAAATTTGGAGGGACGTGAGGGGTAAAAAGGGAAATGTACGTCCAACCCCTCTTGTGCTGCGTGGTTCTCTTCATGTGAGGCTTTGTCTTGGGACTCGCTAAGTTACAAGTGATCTGCTAGACAAATACTGTAGAATTTTGTGAGTCCTTTGTACTTTTTTTATTTGTTTTGGTTTTCTTTATGTTGTTATATACTCCCTATATGTATGATACAATAAACAGTACTATATGAAAATTTTAAATATCGTACTTGGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E418178" ref_strand="+" ref_description="SGN-E418178 [STM-27-C9]">
      <seq>atagtactgtttattgtatcatacatatagggagtatataacaacataaaggaaacaaaaacaaataaaaaaagtacaaagggctcacaaaattctacagtatttgtctagcagatcacttgtaacttagcgagtcccaagacaaagcctcacatgaagagaaccacgcagcacaagaggggttggacgtacatttccctttttacccctcacgtccctccaaatttacatcacggaacatgcattcggattttcatcgctgaaaatctgcggaggtggagggtacgcaaacatttcatgtgcaagcctctgtggattattatacagctgatgattctgaggatggtgatagtagtaaaactcattcttcttcacatctactattggatcgacgtcgttttgtacagcttcttccttagctgctgctacggcttcttccttagctgctgcggctgcttcttccttcttctcctctttgttgtcaccttcttcaactttctttgcttctttgtcatcggttttcttctcttccttttgatcttctttgggcttagcctcctccttcgctttctgttcaggttctactttcacaataactgcccgttttccagtccttttgcttacatattccaccagttttgttgcctcaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0113N10.1" temp_strand="-" temp_description="C06SLm0113N10.1  AC219227.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0113N10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="108089" stop="106832"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107789" g_stop="107132" g_length="658"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="651" r_length="651" r_score="0.916"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0113N10.1" gen_strand="-" ref_id="SGN-E418178" ref_strand="+">
        <total_alignment_score>0.916</total_alignment_score>
        <cumulative_length_of_scored_exons>658</cumulative_length_of_scored_exons>
        <coverage percentage="1.011" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0113N10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E418178" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107789" e_stop="107132"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAGTACTGTTTATTGTATCATACATATAGGGAGTATATAACAACATAAAGAAGACCAAAA-AAAAAAAAAAAGTACAGAGGGCTCATAAAATTCTACAGTATTTGTCTAGTAGATCACTTGTAACTTAGCGAGTCCCAAGACAAAGACTCACATGAAGAG---CAC-CACCACAAGAGGGGTTGGACGTACATTGCCCTTTTTACCCCTCATATCCCTCCAAATTTACATCACGGAACATGCATTCGGATTTTCATCGCTGAAAATCTGCGGAGGTGGAGGGTACGCAAACATTTCATGTGCAAGTCTCTGTGGATTATTGTACAGCTGATGATTCTGAGGATGGTGATAGTAGTAAAACTCATTCTTCTTCACATCTACTATTGGATCGACGTCGTTTTGTACAGCTTCTTCCTTAGCTGGTGCTGCTGCTACTACGGCTTCTTCCTTAGCTGGTGCAGCAGCTGCTGCTTCTTCCTTCTTCTCCTCTTTGTCGTCACCTTCAACTTTCTTCGCTTCTTTTTCATCGGTTTTCTTCTCTTCCTTTTGATCTTCCTTGGGCTTCGCCTCCTCCTCCGCTTTCTTTTCAGGTTCTACTTTCACAATAACTGCCCGTTTTCCAGTCCTTTTGCTAACATATTCCACCAGTTTTGTTGCCTCAAA</genome_strand>
        <mrna_strand>ATAGTACTGTTTATTGTATCATACATATAGGGAGTATATAACAACATAAAGGAAACAAAAACAAATAAAAAAAGTACAAAGGGCTCACAAAATTCTACAGTATTTGTCTAGCAGATCACTTGTAACTTAGCGAGTCCCAAGACAAAGCCTCACATGAAGAGAACCACGCAGCACAAGAGGGGTTGGACGTACATTTCCCTTTTTACCCCTCACGTCCCTCCAAATTTACATCACGGAACATGCATTCGGATTTTCATCGCTGAAAATCTGCGGAGGTGGAGGGTACGCAAACATTTCATGTGCAAGCCTCTGTGGATTATTATACAGCTGATGATTCTGAGGATGGTGATAGTAGTAAAACTCATTCTTCTTCACATCTACTATTGGATCGACGTCGTTTTGTACAGCTTCTTCCTTA------GCTGCTG---CTACGGCTTCTTCCTTAGCTGCTGC-G--GCTGCTTCTTCCTTCTTCTCCTCTTTGTTGTCACCTTCTTCAACTTTCTTTGCTTCTTTGTCATCGGTTTTCTTCTCTTCCTTTTGATCTTCTTTGGGCTTAGCCTCCTCCTTCGCTTTCTGTTCAGGTTCTACTTTCACAATAACTGCCCGTTTTCCAGTCCTTTTGCTTACATATTCCACCAGTTTTGTTGCCTCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E452871" ref_strand="+" ref_description="SGN-E452871 [cSTS-18-O15]">
      <seq>ggaaaacgggcagttattgtgaaagtagaacctgaacagaaagcgaaggaggaggctaagcccaaagaagatcaaaaggaagagaagaaaaccgatgacaaagaagcaaagaaagttgaagaaggtgacaacaaagaggagaagaaggaagaagcagccgcagcagctaaggaagaagccgtagcagcagctaaggaagaagctgtacaaaacgacgtcgatccaatagtagatgtgaagaagaatgagttttactactatcaccatcctcagaatcatcagctgtataataatccacagaggcttgcacatgaaatgtttgcgtaccctccacctccgcagattttcagcgatgaaaatccgaatgcatgttccgtgatgtaaatttggagggacgtgaggggtaaaaagggaaatgtacgtccaacccctcttgtgctgcgtggttctcttcatgtgaggctttgtcttgggactcgctaagttacaagtgatctgctagacaaatactgtagaattttgtgagccctttgtactttttttatttgtttttgtttcctttatgttgttatatactccctatatgtatgatacaataaacagtactatatgaaaattttaaatatcgtacttggaacttcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0113N10.1" temp_strand="+" temp_description="C06SLm0113N10.1  AC219227.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0113N10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="106874" stop="108124"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107174" g_stop="107824" g_length="651"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="644" r_length="644" r_score="0.916"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0113N10.1" gen_strand="+" ref_id="SGN-E452871" ref_strand="+">
        <total_alignment_score>0.916</total_alignment_score>
        <cumulative_length_of_scored_exons>651</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0113N10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E452871" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107174" e_stop="107824"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAAACGGGCAGTTATTGTGAAAGTAGAACCTGAAAAGAAAGCGGAGGAGGAGGCGAAGCCCAAGGAAGATCAAAAGGAAGAGAAGAAAACCGATGAAAAAGAAGCGAAGAAAGTTGAAGGTGACGACAAAGAGGAGAAGAAGGAAGAAGCAGCAGCTGCTGCACCAGCTAAGGAAGAAGCCGTAGTAGCAGCAGCACCAGCTAAGGAAGAAGCTGTACAAAACGACGTCGATCCAATAGTAGATGTGAAGAAGAATGAGTTTTACTACTATCACCATCCTCAGAATCATCAGCTGTACAATAATCCACAGAGACTTGCACATGAAATGTTTGCGTACCCTCCACCTCCGCAGATTTTCAGCGATGAAAATCCGAATGCATGTTCCGTGATGTAAATTTGGAGGGATATGAGGGGTAAAAAGGGCAATGTACGTCCAACCCCTC-T-TG-TG-GTGGTGCTCTTCATGTGAGTCTTTGTCTTGGGACTCGCTAAGTTACAAGTGATCTACTAGACAAATACTGTAGAATTTTATGAGCCCTCTGTACTTTTTTT-TTTTTTTTGGTCTTCTTTATGTTGTTATATACTCCCTATATGTATGATACAATAAACAGTACTATATGAAAATTTTAAATATTGTACTTGGAACTTCAAA</genome_strand>
        <mrna_strand>GGAAAACGGGCAGTTATTGTGAAAGTAGAACCTGAACAGAAAGCGAAGGAGGAGGCTAAGCCCAAAGAAGATCAAAAGGAAGAGAAGAAAACCGATGACAAAGAAGCAAAGAAAGTTGAAGAAGGTGACAACAAAGAGGAGAAGAAGGAAGAAGCAGC--C-GCAGCAGCTAAGGAAGAAGCC---GT---AGCAG---CAGCTAAGGAAGAAGCTGTACAAAACGACGTCGATCCAATAGTAGATGTGAAGAAGAATGAGTTTTACTACTATCACCATCCTCAGAATCATCAGCTGTATAATAATCCACAGAGGCTTGCACATGAAATGTTTGCGTACCCTCCACCTCCGCAGATTTTCAGCGATGAAAATCCGAATGCATGTTCCGTGATGTAAATTTGGAGGGACGTGAGGGGTAAAAAGGGAAATGTACGTCCAACCCCTCTTGTGCTGCGTGGTTCTCTTCATGTGAGGCTTTGTCTTGGGACTCGCTAAGTTACAAGTGATCTGCTAGACAAATACTGTAGAATTTTGTGAGCCCTTTGTACTTTTTTTATTTGTTTTTGTTTCCTTTATGTTGTTATATACTCCCTATATGTATGATACAATAAACAGTACTATATGAAAATTTTAAATATCGTACTTGGAACTTCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E600177" ref_strand="+" ref_description="SGN-E600177 [53182]">
      <seq>aagaagccgtagcagcagctaaggaagaagctgtacaaaacgacgtcgatccaatagtagatgtgaagaagaatgagttttactactatcaccatcctcagaatcatcagctgtataataatccacagaggcttgcacatgaaatgtttgcgtaccctccacctccgcagattttcagcgatgaaaatccgaatgcatgttccgtgatgtaaatttggagggacgtgaggggtaaaaagggaaatgtacgtccaacccctcttgtgctgcgtggctctcttcatgtgaggctttgtcttgggactcgctaagttacaagtgatctgctagacaaatactgtagaattttgtgagccctttgtactttttttatttgtttttgtttcctttatgttgttatatactccctatatgtatgatacaataaacagtactatatgaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0113N10.1" temp_strand="+" temp_description="C06SLm0113N10.1  AC219227.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0113N10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="107059" stop="108096"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107358" g_stop="107796" g_length="439"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="444" r_length="444" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0113N10.1" gen_strand="+" ref_id="SGN-E600177" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>439</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0113N10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E600177" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107358" e_stop="107796"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGTAGCAGCAGCACCAGCTAAGGAAGAAGCTGTACAAAACGACGTCGATCCAATAGTAGATGTGAAGAAGAATGAGTTTTACTACTATCACCATCCTCAGAATCATCAGCTGTACAATAATCCACAGAGACTTGCACATGAAATGTTTGCGTACCCTCCACCTCCGCAGATTTTCAGCGATGAAAATCCGAATGCATGTTCCGTGATGTAAATTTGGAGGGATATGAGGGGTAAAAAGGGCAATGTACGTCCAACCCCTCTTGTGGTG-GT-G--CTCTTCATGTGAGTCTTTGTCTTGGGACTCGCTAAGTTACAAGTGATCTACTAGACAAATACTGTAGAATTTTATGAGCCCTCTGTACTTTTTTT-TTTTTTTTGGTCTTCTTTATGTTGTTATATACTCCCTATATGTATGATACAATAAACAGTACTATATGAAAA</genome_strand>
        <mrna_strand>AAGAAGCCGTAGCAGCAGCTAAGGAAGAAGCTGTACAAAACGACGTCGATCCAATAGTAGATGTGAAGAAGAATGAGTTTTACTACTATCACCATCCTCAGAATCATCAGCTGTATAATAATCCACAGAGGCTTGCACATGAAATGTTTGCGTACCCTCCACCTCCGCAGATTTTCAGCGATGAAAATCCGAATGCATGTTCCGTGATGTAAATTTGGAGGGACGTGAGGGGTAAAAAGGGAAATGTACGTCCAACCCCTCTTGTGCTGCGTGGCTCTCTTCATGTGAGGCTTTGTCTTGGGACTCGCTAAGTTACAAGTGATCTGCTAGACAAATACTGTAGAATTTTGTGAGCCCTTTGTACTTTTTTTATTTGTTTTTGTTTCCTTTATGTTGTTATATACTCCCTATATGTATGATACAATAAACAGTACTATATGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E586520" ref_strand="+" ref_description="SGN-E586520 [60577]">
      <seq>gctgtataataatccacagaggcttgcacatgaaatgtttgcgtaccctccacctccgcagattttcagcgatgaaaatccgaatgcatgttccgtgatgtaaatttggagggacgtgaggggtaaaaagggaaatgtacgtccaacccctcttgtgctgcgtggttctcttcatgtgaggctttgtcttgggactcgctaagttacaagtgatctgctagacaaatactgtagaattttgtgagccctttgtactttttttatttgtttttgtttcctttatgttgttatatactccctatatgtatgatacaataaacagtactatatgaaaattttaaatatcgtacttggaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0113N10.1" temp_strand="+" temp_description="C06SLm0113N10.1  AC219227.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0113N10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="107167" stop="108117"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107467" g_stop="107817" g_length="351"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="356" r_length="356" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="357" polyA_stop="380"/>
      <MATCH_line gen_id="C06SLm0113N10.1" gen_strand="+" ref_id="SGN-E586520" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>351</cumulative_length_of_scored_exons>
        <coverage percentage="0.924" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0113N10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E586520" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107467" e_stop="107817"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGTACAATAATCCACAGAGACTTGCACATGAAATGTTTGCGTACCCTCCACCTCCGCAGATTTTCAGCGATGAAAATCCGAATGCATGTTCCGTGATGTAAATTTGGAGGGATATGAGGGGTAAAAAGGGCAATGTACGTCCAACCCCTC-T-TG-TG-GTGGTGCTCTTCATGTGAGTCTTTGTCTTGGGACTCGCTAAGTTACAAGTGATCTACTAGACAAATACTGTAGAATTTTATGAGCCCTCTGTACTTTTTTT-TTTTTTTTGGTCTTCTTTATGTTGTTATATACTCCCTATATGTATGATACAATAAACAGTACTATATGAAAATTTTAAATATTGTACTTGGAA</genome_strand>
        <mrna_strand>GCTGTATAATAATCCACAGAGGCTTGCACATGAAATGTTTGCGTACCCTCCACCTCCGCAGATTTTCAGCGATGAAAATCCGAATGCATGTTCCGTGATGTAAATTTGGAGGGACGTGAGGGGTAAAAAGGGAAATGTACGTCCAACCCCTCTTGTGCTGCGTGGTTCTCTTCATGTGAGGCTTTGTCTTGGGACTCGCTAAGTTACAAGTGATCTGCTAGACAAATACTGTAGAATTTTGTGAGCCCTTTGTACTTTTTTTATTTGTTTTTGTTTCCTTTATGTTGTTATATACTCCCTATATGTATGATACAATAAACAGTACTATATGAAAATTTTAAATATCGTACTTGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E587152" ref_strand="+" ref_description="SGN-E587152 [78266]">
      <seq>atccacagaggcttgcacatgaaatgtttgcgtaccctccacctccgcagattttcagcgatgaaaatccgaatgcatgttccgtgatgtaaatttggagggacgtgaggggtaaaaagggaaatgtacgtccaacccctcttgtgctgcgtggttatcttcatgtgaggctttgtcttgggactcgctaagttacaagtgatctgctagacaaatactgtagaattttgtgagccctttgtactttttttatttgttttggttttctttatgttgttatatactccctatatgtatgatacaataaacagtactatatgaaaattttaaatatcgtaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0113N10.1" temp_strand="+" temp_description="C06SLm0113N10.1  AC219227.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0113N10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="107178" stop="108110"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107478" g_stop="107807" g_length="330"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="335" r_length="335" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="338" polyA_stop="350"/>
      <MATCH_line gen_id="C06SLm0113N10.1" gen_strand="+" ref_id="SGN-E587152" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>330</cumulative_length_of_scored_exons>
        <coverage percentage="0.943" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0113N10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E587152" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107478" e_stop="107807"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCCACAGAGACTTGCACATGAAATGTTTGCGTACCCTCCACCTCCGCAGATTTTCAGCGATGAAAATCCGAATGCATGTTCCGTGATGTAAATTTGGAGGGATATGAGGGGTAAAAAGGGCAATGTACGTCCAACCCCTC-T-TG-TG-GTGGTGCTCTTCATGTGAGTCTTTGTCTTGGGACTCGCTAAGTTACAAGTGATCTACTAGACAAATACTGTAGAATTTTATGAGCCCTCTGTACTTTTTTT-TTTTTTTTGGTCTTCTTTATGTTGTTATATACTCCCTATATGTATGATACAATAAACAGTACTATATGAAAATTTTAAATATT</genome_strand>
        <mrna_strand>ATCCACAGAGGCTTGCACATGAAATGTTTGCGTACCCTCCACCTCCGCAGATTTTCAGCGATGAAAATCCGAATGCATGTTCCGTGATGTAAATTTGGAGGGACGTGAGGGGTAAAAAGGGAAATGTACGTCCAACCCCTCTTGTGCTGCGTGGTTATCTTCATGTGAGGCTTTGTCTTGGGACTCGCTAAGTTACAAGTGATCTGCTAGACAAATACTGTAGAATTTTGTGAGCCCTTTGTACTTTTTTTATTTGTTTTGGTTTTCTTTATGTTGTTATATACTCCCTATATGTATGATACAATAAACAGTACTATATGAAAATTTTAAATATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E596189" ref_strand="+" ref_description="SGN-E596189 [39478]">
      <seq>gttccaagtacgatatttaaaattttcatatagtactgtttattgtatcatacatatagggagtatataacaacataaaggaaacaaaaacaaataaaaaaagtacaaagggctcacaaaattctacagtatttgtctagcagatcacttgtaacttagcgagtcccaagacaaagcctcacatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0113N10.1" temp_strand="-" temp_description="C06SLm0113N10.1  AC219227.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0113N10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="108118" stop="107334"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107818" g_stop="107634" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="186" r_length="186" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0113N10.1" gen_strand="-" ref_id="SGN-E596189" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>185</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0113N10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E596189" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107818" e_stop="107634"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCCAAGTACAATATTTAAAATTTTCATATAGTACTGTTTATTGTATCATACATATAGGGAGTATATAACAACATAAAGAAGACCAAAA-AAAAAAAAAAAGTACAGAGGGCTCATAAAATTCTACAGTATTTGTCTAGTAGATCACTTGTAACTTAGCGAGTCCCAAGACAAAGACTCACATGA</genome_strand>
        <mrna_strand>GTTCCAAGTACGATATTTAAAATTTTCATATAGTACTGTTTATTGTATCATACATATAGGGAGTATATAACAACATAAAGGAAACAAAAACAAATAAAAAAAGTACAAAGGGCTCACAAAATTCTACAGTATTTGTCTAGCAGATCACTTGTAACTTAGCGAGTCCCAAGACAAAGCCTCACATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E724106" ref_strand="+" ref_description="SGN-E724106 [FC23AD03]">
      <seq>tattgttctttagttgcagcaacaaatcttttgttttttttcaataatcatgggtaaattcttgactctcatgactcaccttcatacacttgccgggtaaatattttagttattatactttttcatttgtatttcctctttaatttctccttaaattataatctccttctgatatatacgcaggccatccgtgatgttgctttatcctctgtaagtatttgtattcctttacctcttttagtatacttgctttgtattattttatacaacatagtttcaatttcgagagttaaacagctctgttaccgtctttttttttctctctttatgataaagatatgcatcagtagtggctatagagagtacgtcaaagttggatgatgagcaatggcttgcttattggattctctattcttttctcactcttatggagatgctccttcaacccatgcttcaatggtgagtaacgttttgagttagtaattaccttgtaattgattgggttagttgtagattcgaaaaaaaatcgtgttaacatgctcaaaactcgtatgttcaatttttatgtaagtacttggtttaattgtaggatacctatttggtatgatttgaagctagcaatggtagcatggcttgttcttccccagttcaggggagctgcttttatttatgagaagtttgttagggaaaaactcatcaacaaatatggagctcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0113N10.1" temp_strand="+" temp_description="C06SLm0113N10.1  AC219227.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0113N10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="120346" stop="121661"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120646" g_stop="121361" g_length="716"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="715" r_length="715" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0113N10.1" gen_strand="+" ref_id="SGN-E724106" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>716</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0113N10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E724106" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120646" e_stop="121361"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTGTTCTTTAGTTGCAGCAACAAATCTTTTGTTTTTTTTCAATAATCATGGGTAAATTCTTGACTCTCATGACTCACCTTCATACACTTGCCGGGTAAATATTTTAGTTATTATACTTTTTCATTTGTATTTCCTCTTTAATTTCTCCTTAAATTATAATCTCCTTCTGATATATACGCAGGCCATCCGTGATGTTGCTTTATCCTCTGTAAGTATTTGTATTCCTTTACCTCTTTTAGTATACTTGCTTTGTTTTATTTTATACAACATAGTTTCAATTTCGAGAGTTAAACAGCTCTGTTACCGTCTTTTTTTTTTCTCTCTTTATGATAAAGATATGCATCAGTAGTGGCTATAGAGAGTACGTCAAAGTTGGATGATGAGCAATGGCTTGCTTATTGGATTCTCTATTCTTTTCTCACTCTTATGGAGATGCTCCTTCAACCCATGCTTCAATGGTGAGTAACGTTTTGAGTTAGTAATTACCTTGTAATTGATTGGGTTAGTTGTAGATTCGAAAAAAAATCGTGTTAACATGCTCAAAACTCGTATGTTCAATTTTTATGTAAGTACTTGGTTTAATTGTAGGATACCTATTTGGTATGATTTGAAGCTAGCAATGGTAGCATGGCTTGTTCTTCCCCAGTTCAGGGGAGCTGCTTTTATTTATGAGAAGTTTGTTAGGGAAAAACTCATCAACAAATATGGAGCTCG</genome_strand>
        <mrna_strand>TATTGTTCTTTAGTTGCAGCAACAAATCTTTTGTTTTTTTTCAATAATCATGGGTAAATTCTTGACTCTCATGACTCACCTTCATACACTTGCCGGGTAAATATTTTAGTTATTATACTTTTTCATTTGTATTTCCTCTTTAATTTCTCCTTAAATTATAATCTCCTTCTGATATATACGCAGGCCATCCGTGATGTTGCTTTATCCTCTGTAAGTATTTGTATTCCTTTACCTCTTTTAGTATACTTGCTTTGTATTATTTTATACAACATAGTTTCAATTTCGAGAGTTAAACAGCTCTGTTACCGTC-TTTTTTTTTCTCTCTTTATGATAAAGATATGCATCAGTAGTGGCTATAGAGAGTACGTCAAAGTTGGATGATGAGCAATGGCTTGCTTATTGGATTCTCTATTCTTTTCTCACTCTTATGGAGATGCTCCTTCAACCCATGCTTCAATGGTGAGTAACGTTTTGAGTTAGTAATTACCTTGTAATTGATTGGGTTAGTTGTAGATTCGAAAAAAAATCGTGTTAACATGCTCAAAACTCGTATGTTCAATTTTTATGTAAGTACTTGGTTTAATTGTAGGATACCTATTTGGTATGATTTGAAGCTAGCAATGGTAGCATGGCTTGTTCTTCCCCAGTTCAGGGGAGCTGCTTTTATTTATGAGAAGTTTGTTAGGGAAAAACTCATCAACAAATATGGAGCTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E718503" ref_strand="+" ref_description="SGN-E718503 [FC04DE01]">
      <seq>gggcgattggcggccaatcggccgaattcccatggggatccgatatctttatgttttgcttttatcaaggataagaatactactctttctgttttttgttttttcttttcttttcattatcttaaacgtttgcaggttttagagtccataaatataatttcacttgtttgagtctgagctagcccaaatcattagtatgttggttgaactaattcacaagtttctcaatttagtagctcctccagtttctttcttcagcttgcttcttttcttgccaccttttcaatttttcaagtgtgttctctcaattttgggcacactttttagtgaagatgttgctggaaaggtcgtcattatcactggggcttcatctggcattggcgagtatctggcatatgagtacgccaaaagaggagcatgtttaactcttgcagccagaagagatagaagtttgaatgaagtggccgaaggggcacgtgaactaggctcaccagatgttataacaattcaagctgatgtttcgaaagccgaagactgtagaaggattgttgatcaaaccatgagtcactttggccgactggaccatctggttaataatgctggagtgcacgcgattgctctgtttgaagatacagaggatgtcactgattttaaatctgtcatggacatcaacttctggggttctgtttacatgactcgctttgcgattccatatcttaggtatagtgggggaaggatcattgtgctttcctcatctgcttcttggctgcctgctccaagatcaagcttttataatgcaagcaaagcagcagtat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0113N10.1" temp_strand="+" temp_description="C06SLm0113N10.1  AC219227.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0113N10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="122043" stop="124377"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122343" g_stop="122683" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="385" r_length="341" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="122684" i_stop="122975" i_length="292">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="122976" g_stop="123168" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="578" r_length="193" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="123169" i_stop="123282" i_length="114">
            <donor d_prob="0.928" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="123283" g_stop="123368" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="579" r_stop="664" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="123369" i_stop="123838" i_length="470">
            <donor d_prob="0.946" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="123839" g_stop="123970" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="665" r_stop="796" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="123971" i_stop="124058" i_length="88">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="124059" g_stop="124077" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="797" r_stop="815" r_length="19" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0113N10.1" gen_strand="+" ref_id="SGN-E718503" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>771</cumulative_length_of_scored_exons>
        <coverage percentage="0.946" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0113N10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E718503" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122343" e_stop="122683"/>
          <exon e_start="122976" e_stop="123168"/>
          <exon e_start="123283" e_stop="123368"/>
          <exon e_start="123839" e_stop="123970"/>
          <exon e_start="124059" e_stop="124077"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTTTATGTTTTGCTTTTATCAAGGATAAGAATACTACTCTTTCTGTTTTTTGTTTTTTCTTTTCTTTTCATTATCTTAAACGTTTGCAGGTTTTAGAGTCCATAAATATAATTTCACTTGTTTGAGTCTGAGCTAGCCCAAATCATTAGTATGTTGGTTGAACTAATTCACAAGTTTCTCAATTTAGTAGCTCCTCCAGTTTCTTTCTTCAGCTTGCTTCTTTTCTTGCCACCTTTTCAATTTTTCAAGTGTGTTCTCTCAATTTTGGGCACACTTTTTAGTGAAGATGTTGCTGGAAAGGTCGTCATTATCACTGGGGCTTCATCTGGCATTGGCGAGGTTCGTTAATTTCAACTATTTTATTCGTTTTAATTTATGTGATATAGTTCGATTTGACACCGAGTAATAGTACATGGATTTTTAAGTTAGGATCACCTAATTTTAGGGAACTTTAGTTGAATTTTGTTGGGCTTGGGGAATTAGTACTATATAGTATGTATAACTCGTTGATTAATGAATTCCTTTTTTACATGAACGAAAAAATGTGGAGAAGGGGTTGAAAATTTCTACATTTGAAACCCCTTCTATAAACTCTGCAACTGATGAAGGAAAAATTTTCAACAATTTGCAGTATCTGGCATATGAGTACGCCAAAAGAGGAGCATGTTTAACTCTTGCAGCCAGAAGAGATAGAAGTTTGAATGAAGTGGCCGAAGGGGCACGTGAACTAGGCTCACCAGATGTTATAACAATTCAAGCTGATGTTTCGAAAGCCGAAGACTGTAGAAGGATTGTTGATCAAACCATGAGTCACTTTGGCCGACGTCAGTTTTAATTCTAATTCGTTTGATTCTCGTGTTTATAAGTTTTTTTTTTATAGGATGATTAATCATGTTTTATGAACTCTTTTGTGTTGCGTTGTTGTGTTATTAATGCAGTGGACCATCTGGTTAATAATGCTGGAGTGCACGCGATTGCTCTGTTTGAAGATACAGAGGATGTCACTGATTTTAAATCTGTCATGGTAAAGTGGAAATTGATTTTGATTGTTACCTATAAGCAGACAGTTTGAAGTTTTATCACAATTAACCATAAATGAAATTCATGATTACTTCCCCTTTGCAAATGTTGATATCGGTGACGAATAAGTTTACTAGTGCTATGTACTTTCATTGTGTTGAGCTAGAACAGAAACTTTAACTAGGGTCTGAACTACCCGTGGAATACCGAATTTAAACCTGAGAGAATGCTAACAAGAGATTGACCTGGTCATCTGTTGTAGTTTGTCGTTCTTAGTCATTTTCATAGTCGATGACTCAGATGTATATCAATCGGTTGTATTAGGTTATATGTTGAGTTTTTAGGTTGATAAATCAGGATTGACTCGCATCTACTTAGTGTTATATGTGATTTTAACTTGATGAGGAAAAATTGTGCACTACTCATGGACTAAAGTTATAGTAATTGCTATTTACATGTTTCTGTATTTCGCAGGACATCAACTTCTGGGGTTCTGTTTACATGACTCGCTTTGCGATTCCATATCTTAGGTATAGTGGGGGAAGGATCATTGTGCTTTCCTCATCTGCTTCTTGGCTGCCTGCTCCAAGATCAAGCTTTTATAATGTAAGTAGCTAAGTATAAACTTAACTGCTTCCATTGGAAACAGTAACATTTTATCTTGATGACCCTATTGAAAATTTTGTCATGGCAGGCAAGCAAAGCAGCAGTAT</genome_strand>
        <mrna_strand>ATCTTTATGTTTTGCTTTTATCAAGGATAAGAATACTACTCTTTCTGTTTTTTGTTTTTTCTTTTCTTTTCATTATCTTAAACGTTTGCAGGTTTTAGAGTCCATAAATATAATTTCACTTGTTTGAGTCTGAGCTAGCCCAAATCATTAGTATGTTGGTTGAACTAATTCACAAGTTTCTCAATTTAGTAGCTCCTCCAGTTTCTTTCTTCAGCTTGCTTCTTTTCTTGCCACCTTTTCAATTTTTCAAGTGTGTTCTCTCAATTTTGGGCACACTTTTTAGTGAAGATGTTGCTGGAAAGGTCGTCATTATCACTGGGGCTTCATCTGGCATTGGCGAG....................................................................................................................................................................................................................................................................................................TATCTGGCATATGAGTACGCCAAAAGAGGAGCATGTTTAACTCTTGCAGCCAGAAGAGATAGAAGTTTGAATGAAGTGGCCGAAGGGGCACGTGAACTAGGCTCACCAGATGTTATAACAATTCAAGCTGATGTTTCGAAAGCCGAAGACTGTAGAAGGATTGTTGATCAAACCATGAGTCACTTTGGCCGAC..................................................................................................................TGGACCATCTGGTTAATAATGCTGGAGTGCACGCGATTGCTCTGTTTGAAGATACAGAGGATGTCACTGATTTTAAATCTGTCATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACATCAACTTCTGGGGTTCTGTTTACATGACTCGCTTTGCGATTCCATATCTTAGGTATAGTGGGGGAAGGATCATTGTGCTTTCCTCATCTGCTTCTTGGCTGCCTGCTCCAAGATCAAGCTTTTATAAT........................................................................................GCAAGCAAAGCAGCAGTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E745265" ref_strand="+" ref_description="SGN-E745265 [GI|47105813]">
      <seq>gatgttttgcttttatcaaggataagaatactactctttctgttttttgttttttcttttcttttcattatcttaaacgtttgcaggttttagagtccataaatataatttcacttgtttgagtctgagctagcccaaatcattagtaacaatgttggttgaactaattcacaagtttctcaatttagtagctcctccagtttctttcttcagcttgcttcttttcttgccaccttttcaatttttcaagtgtgttctctcaattttgggcacactttttagtgaagatgttgctggaaaggtcgtcattatcactggggcttcatctggcattggcgagtatctggcatatgagtacgccaaaagaggagcatgtttaactcttgcagccagaagagatagaagtttgaatgaagtggccgaaggggcacgtgaactaggctcaccagatgttataacaattcaagctgatgtttcgaaagccgaagactgtagaaggattgttgatcaaaccatgagtcactttggccgactggaccatctggttaataatgctggagtgcacgcgattgctctgtttgaagatacagaggatgtcactgattttaaatctgtcatggacatcgacttctggggttctgtttacatggctcgctttgcgattccatatcttaggtatagtggggggaaggatcattgtgctttcctcatctgcttcttggctgcctgctccaagatcaagcttttataatgcaagcaaagcagcagtatctcaattctttgagacgttaaggattgagctggggcaggacatcaaaataactctggtgacgcctggctttgttgaatctgaactaacgcaaggcaaatacatcggtaagggtggcgatgtagaggttgatcaaggaatgagggatgtattcataggcgcgactccagtagccaaagttgaatcatgtgccaagacaattgtcaatagtgcttgccgaggtgaaaggtatgttacaataccatcttggtttcgggttagctacttgtggaaggtgtttgccccggaggtgttagaatggatgtacaggctgatgcatctcaccggaacttcaccagaggatgcacttagcaagaaagtagcggattataccggcgcgcaaaacgtgttgtatcccgagactatcaggactggagaaacaaagactgattaatgttgtgatgtaaaaagaggtagtaagtgtttgtatcgtctcctgtaatttcctaaatcacgagtttcaattagaaagacctttgtgtggttgtttgtattgtgactatgaataaaattgagcatgtttcacaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0113N10.1" temp_strand="+" temp_description="C06SLm0113N10.1  AC219227.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0113N10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="122049" stop="125107"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122348" g_stop="122683" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="340" r_length="340" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="122684" i_stop="122975" i_length="292">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="122976" g_stop="123168" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="533" r_length="193" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="123169" i_stop="123282" i_length="114">
            <donor d_prob="0.928" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="123283" g_stop="123368" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="534" r_stop="619" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="123369" i_stop="123838" i_length="470">
            <donor d_prob="0.946" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="123839" g_stop="123970" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="620" r_stop="752" r_length="133" r_score="0.970"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="123971" i_stop="124058" i_length="88">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="124059" g_stop="124223" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="753" r_stop="917" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="124224" i_stop="124391" i_length="168">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="124392" g_stop="124807" g_length="416"/>
          <reference_exon_boundary r_type="cDNA" r_start="918" r_stop="1333" r_length="416" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1335" polyA_stop="1356"/>
      <MATCH_line gen_id="C06SLm0113N10.1" gen_strand="+" ref_id="SGN-E745265" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>1328</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0113N10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E745265" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122348" e_stop="122683"/>
          <exon e_start="122976" e_stop="123168"/>
          <exon e_start="123283" e_stop="123368"/>
          <exon e_start="123839" e_stop="123970"/>
          <exon e_start="124059" e_stop="124223"/>
          <exon e_start="124392" e_stop="124807"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATGTTTTGCTTTTATCAAGGATAAGAATACTACTCTTTCTGTTTTTTGTTTTTTCTTTTCTTTTCATTATCTTAAACGTTTGCAGGTTTTAGAGTCCATAAATATAATTTCACTTGTTTGAGTCTGAGCTAGCCCAAATCATTAGT----ATGTTGGTTGAACTAATTCACAAGTTTCTCAATTTAGTAGCTCCTCCAGTTTCTTTCTTCAGCTTGCTTCTTTTCTTGCCACCTTTTCAATTTTTCAAGTGTGTTCTCTCAATTTTGGGCACACTTTTTAGTGAAGATGTTGCTGGAAAGGTCGTCATTATCACTGGGGCTTCATCTGGCATTGGCGAGGTTCGTTAATTTCAACTATTTTATTCGTTTTAATTTATGTGATATAGTTCGATTTGACACCGAGTAATAGTACATGGATTTTTAAGTTAGGATCACCTAATTTTAGGGAACTTTAGTTGAATTTTGTTGGGCTTGGGGAATTAGTACTATATAGTATGTATAACTCGTTGATTAATGAATTCCTTTTTTACATGAACGAAAAAATGTGGAGAAGGGGTTGAAAATTTCTACATTTGAAACCCCTTCTATAAACTCTGCAACTGATGAAGGAAAAATTTTCAACAATTTGCAGTATCTGGCATATGAGTACGCCAAAAGAGGAGCATGTTTAACTCTTGCAGCCAGAAGAGATAGAAGTTTGAATGAAGTGGCCGAAGGGGCACGTGAACTAGGCTCACCAGATGTTATAACAATTCAAGCTGATGTTTCGAAAGCCGAAGACTGTAGAAGGATTGTTGATCAAACCATGAGTCACTTTGGCCGACGTCAGTTTTAATTCTAATTCGTTTGATTCTCGTGTTTATAAGTTTTTTTTTTATAGGATGATTAATCATGTTTTATGAACTCTTTTGTGTTGCGTTGTTGTGTTATTAATGCAGTGGACCATCTGGTTAATAATGCTGGAGTGCACGCGATTGCTCTGTTTGAAGATACAGAGGATGTCACTGATTTTAAATCTGTCATGGTAAAGTGGAAATTGATTTTGATTGTTACCTATAAGCAGACAGTTTGAAGTTTTATCACAATTAACCATAAATGAAATTCATGATTACTTCCCCTTTGCAAATGTTGATATCGGTGACGAATAAGTTTACTAGTGCTATGTACTTTCATTGTGTTGAGCTAGAACAGAAACTTTAACTAGGGTCTGAACTACCCGTGGAATACCGAATTTAAACCTGAGAGAATGCTAACAAGAGATTGACCTGGTCATCTGTTGTAGTTTGTCGTTCTTAGTCATTTTCATAGTCGATGACTCAGATGTATATCAATCGGTTGTATTAGGTTATATGTTGAGTTTTTAGGTTGATAAATCAGGATTGACTCGCATCTACTTAGTGTTATATGTGATTTTAACTTGATGAGGAAAAATTGTGCACTACTCATGGACTAAAGTTATAGTAATTGCTATTTACATGTTTCTGTATTTCGCAGGACATCAACTTCTGGGGTTCTGTTTACATGACTCGCTTTGCGATTCCATATCTTAGGTATAGT-GGGGGAAGGATCATTGTGCTTTCCTCATCTGCTTCTTGGCTGCCTGCTCCAAGATCAAGCTTTTATAATGTAAGTAGCTAAGTATAAACTTAACTGCTTCCATTGGAAACAGTAACATTTTATCTTGATGACCCTATTGAAAATTTTGTCATGGCAGGCAAGCAAAGCAGCAGTATCTCAATTCTTTGAGACGTTAAGGATTGAGCTGGGGCAGGACATCAAAATAACTCTGGTGACGCCTGGCTTTGTTGAATCTGAACTAACGCAAGGCAAATACATCGGTAAGGGTGGCGATGTAGAGGTTGATCAAGGAATGAGGGATGTAAGTTTTCCTCTTTGCTACTAGTTCTTGCATTTTCATCCGAGCTAGGGACTATGTTTCTTACATAATCTATTCGGTTTAGGCTCATGTTTCCTCATTTGCTTCTACAAAGAGTTACATACATTACTCGTTTTGAGGAAGAAAGTGAACGTTTTTGTGTGAACTTAGGTATTCATAGGCGCGACTCCAGTAGCCAAAGTTGAATCATGTGCCAAGACAATTGTCAATAGTGCTTGCCGAGGTGAAAGGTATGTTACAATACCATCTTGGTTTCGGGTTAGCTACTTGTGGAAGGTGTTTGCCCCGGAGGTGTTAGAATGGATGTACAGGCTGATGCATCTCACCGGAACTTCACCAGAGGATGCACTTAGCAAGAAAGTAGCGGATTATACCGGCGCGCAAAACGTGTTGTATCCCGAGACTATCAGGACTGGAGAAACAAAGACTGATTAATGTTGTGATGTAAAAAGAGGTAGTAAGTGTTTGTATCGTCTCCTGTAATTTCCTAAATCACGAGTTTCAATTAGAAAGACCTTTGTGTGGTTGTTTGTATTGTGACTATGAATAAAATTGAGCATGTTTCA</genome_strand>
        <mrna_strand>GATGTTTTGCTTTTATCAAGGATAAGAATACTACTCTTTCTGTTTTTTGTTTTTTCTTTTCTTTTCATTATCTTAAACGTTTGCAGGTTTTAGAGTCCATAAATATAATTTCACTTGTTTGAGTCTGAGCTAGCCCAAATCATTAGTAACAATGTTGGTTGAACTAATTCACAAGTTTCTCAATTTAGTAGCTCCTCCAGTTTCTTTCTTCAGCTTGCTTCTTTTCTTGCCACCTTTTCAATTTTTCAAGTGTGTTCTCTCAATTTTGGGCACACTTTTTAGTGAAGATGTTGCTGGAAAGGTCGTCATTATCACTGGGGCTTCATCTGGCATTGGCGAG....................................................................................................................................................................................................................................................................................................TATCTGGCATATGAGTACGCCAAAAGAGGAGCATGTTTAACTCTTGCAGCCAGAAGAGATAGAAGTTTGAATGAAGTGGCCGAAGGGGCACGTGAACTAGGCTCACCAGATGTTATAACAATTCAAGCTGATGTTTCGAAAGCCGAAGACTGTAGAAGGATTGTTGATCAAACCATGAGTCACTTTGGCCGAC..................................................................................................................TGGACCATCTGGTTAATAATGCTGGAGTGCACGCGATTGCTCTGTTTGAAGATACAGAGGATGTCACTGATTTTAAATCTGTCATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACATCGACTTCTGGGGTTCTGTTTACATGGCTCGCTTTGCGATTCCATATCTTAGGTATAGTGGGGGGAAGGATCATTGTGCTTTCCTCATCTGCTTCTTGGCTGCCTGCTCCAAGATCAAGCTTTTATAAT........................................................................................GCAAGCAAAGCAGCAGTATCTCAATTCTTTGAGACGTTAAGGATTGAGCTGGGGCAGGACATCAAAATAACTCTGGTGACGCCTGGCTTTGTTGAATCTGAACTAACGCAAGGCAAATACATCGGTAAGGGTGGCGATGTAGAGGTTGATCAAGGAATGAGGGAT........................................................................................................................................................................GTATTCATAGGCGCGACTCCAGTAGCCAAAGTTGAATCATGTGCCAAGACAATTGTCAATAGTGCTTGCCGAGGTGAAAGGTATGTTACAATACCATCTTGGTTTCGGGTTAGCTACTTGTGGAAGGTGTTTGCCCCGGAGGTGTTAGAATGGATGTACAGGCTGATGCATCTCACCGGAACTTCACCAGAGGATGCACTTAGCAAGAAAGTAGCGGATTATACCGGCGCGCAAAACGTGTTGTATCCCGAGACTATCAGGACTGGAGAAACAAAGACTGATTAATGTTGTGATGTAAAAAGAGGTAGTAAGTGTTTGTATCGTCTCCTGTAATTTCCTAAATCACGAGTTTCAATTAGAAAGACCTTTGTGTGGTTGTTTGTATTGTGACTATGAATAAAATTGAGCATGTTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E720601" ref_strand="+" ref_description="SGN-E720601 [FC11BB05]">
      <seq>atcggccgaattgactactctttctgttttttgttttttcttttcttttcattatcttaaacgtttgcaggttttagagtccataaatataatttcacttgtttgagtctgagctagcccaaatcattagtatgttggttgaactaattcacaagtttctcaatttagtagctcctccagtttctttcttcagcttgcttcttttcttgccaccttttcaatttttcaagtgtgttctctcaattttgggcacactttttagtgaagatgttgctggaaaggtcgtcattatcactggggcttcatctggcattggcgagtatctggcatatgagtacgccaaaagaggagcatgtttaactcttgcagccagaagagatagaagtttgaatgaagtggccgaaggggcacgtgaactaggctcaccagatgttataacaattcaagctgatgtttcgaaagccgaagactgtagaaggattgttgatcaaaccatgagtcactttggccgactggaccatctggttaataatgctggagtgcacgcgattgctctgtttgaagatacagaggatgtcactgattttaaatctgtcatggacatcaacttctggggttctgtttacatgactcgcctttgcgattccatatcttaggtatagtgggggaaggatcattgtgctttcctcatctgcttcttggctgcctgctccaagatcaagcttttataatgcaagcaaagcagcagtatctcaattctttgagacgttaaggattgagctggggcaggacatcaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0113N10.1" temp_strand="+" temp_description="C06SLm0113N10.1  AC219227.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0113N10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="122073" stop="124424"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122379" g_stop="122683" g_length="305"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="320" r_length="305" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="122684" i_stop="122975" i_length="292">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="122976" g_stop="123168" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="513" r_length="193" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="123169" i_stop="123282" i_length="114">
            <donor d_prob="0.928" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="123283" g_stop="123368" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="514" r_stop="599" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="123369" i_stop="123838" i_length="470">
            <donor d_prob="0.946" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="123839" g_stop="123970" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="600" r_stop="732" r_length="133" r_score="0.985"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="123971" i_stop="124058" i_length="88">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="124059" g_stop="124124" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="733" r_stop="798" r_length="66" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0113N10.1" gen_strand="+" ref_id="SGN-E720601" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>782</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0113N10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E720601" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122379" e_stop="122683"/>
          <exon e_start="122976" e_stop="123168"/>
          <exon e_start="123283" e_stop="123368"/>
          <exon e_start="123839" e_stop="123970"/>
          <exon e_start="124059" e_stop="124124"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACTCTTTCTGTTTTTTGTTTTTTCTTTTCTTTTCATTATCTTAAACGTTTGCAGGTTTTAGAGTCCATAAATATAATTTCACTTGTTTGAGTCTGAGCTAGCCCAAATCATTAGTATGTTGGTTGAACTAATTCACAAGTTTCTCAATTTAGTAGCTCCTCCAGTTTCTTTCTTCAGCTTGCTTCTTTTCTTGCCACCTTTTCAATTTTTCAAGTGTGTTCTCTCAATTTTGGGCACACTTTTTAGTGAAGATGTTGCTGGAAAGGTCGTCATTATCACTGGGGCTTCATCTGGCATTGGCGAGGTTCGTTAATTTCAACTATTTTATTCGTTTTAATTTATGTGATATAGTTCGATTTGACACCGAGTAATAGTACATGGATTTTTAAGTTAGGATCACCTAATTTTAGGGAACTTTAGTTGAATTTTGTTGGGCTTGGGGAATTAGTACTATATAGTATGTATAACTCGTTGATTAATGAATTCCTTTTTTACATGAACGAAAAAATGTGGAGAAGGGGTTGAAAATTTCTACATTTGAAACCCCTTCTATAAACTCTGCAACTGATGAAGGAAAAATTTTCAACAATTTGCAGTATCTGGCATATGAGTACGCCAAAAGAGGAGCATGTTTAACTCTTGCAGCCAGAAGAGATAGAAGTTTGAATGAAGTGGCCGAAGGGGCACGTGAACTAGGCTCACCAGATGTTATAACAATTCAAGCTGATGTTTCGAAAGCCGAAGACTGTAGAAGGATTGTTGATCAAACCATGAGTCACTTTGGCCGACGTCAGTTTTAATTCTAATTCGTTTGATTCTCGTGTTTATAAGTTTTTTTTTTATAGGATGATTAATCATGTTTTATGAACTCTTTTGTGTTGCGTTGTTGTGTTATTAATGCAGTGGACCATCTGGTTAATAATGCTGGAGTGCACGCGATTGCTCTGTTTGAAGATACAGAGGATGTCACTGATTTTAAATCTGTCATGGTAAAGTGGAAATTGATTTTGATTGTTACCTATAAGCAGACAGTTTGAAGTTTTATCACAATTAACCATAAATGAAATTCATGATTACTTCCCCTTTGCAAATGTTGATATCGGTGACGAATAAGTTTACTAGTGCTATGTACTTTCATTGTGTTGAGCTAGAACAGAAACTTTAACTAGGGTCTGAACTACCCGTGGAATACCGAATTTAAACCTGAGAGAATGCTAACAAGAGATTGACCTGGTCATCTGTTGTAGTTTGTCGTTCTTAGTCATTTTCATAGTCGATGACTCAGATGTATATCAATCGGTTGTATTAGGTTATATGTTGAGTTTTTAGGTTGATAAATCAGGATTGACTCGCATCTACTTAGTGTTATATGTGATTTTAACTTGATGAGGAAAAATTGTGCACTACTCATGGACTAAAGTTATAGTAATTGCTATTTACATGTTTCTGTATTTCGCAGGACATCAACTTCTGGGGTTCTGTTTACATGACTCG-CTTTGCGATTCCATATCTTAGGTATAGTGGGGGAAGGATCATTGTGCTTTCCTCATCTGCTTCTTGGCTGCCTGCTCCAAGATCAAGCTTTTATAATGTAAGTAGCTAAGTATAAACTTAACTGCTTCCATTGGAAACAGTAACATTTTATCTTGATGACCCTATTGAAAATTTTGTCATGGCAGGCAAGCAAAGCAGCAGTATCTCAATTCTTTGAGACGTTAAGGATTGAGCTGGGGCAGGACATCAAA</genome_strand>
        <mrna_strand>TACTCTTTCTGTTTTTTGTTTTTTCTTTTCTTTTCATTATCTTAAACGTTTGCAGGTTTTAGAGTCCATAAATATAATTTCACTTGTTTGAGTCTGAGCTAGCCCAAATCATTAGTATGTTGGTTGAACTAATTCACAAGTTTCTCAATTTAGTAGCTCCTCCAGTTTCTTTCTTCAGCTTGCTTCTTTTCTTGCCACCTTTTCAATTTTTCAAGTGTGTTCTCTCAATTTTGGGCACACTTTTTAGTGAAGATGTTGCTGGAAAGGTCGTCATTATCACTGGGGCTTCATCTGGCATTGGCGAG....................................................................................................................................................................................................................................................................................................TATCTGGCATATGAGTACGCCAAAAGAGGAGCATGTTTAACTCTTGCAGCCAGAAGAGATAGAAGTTTGAATGAAGTGGCCGAAGGGGCACGTGAACTAGGCTCACCAGATGTTATAACAATTCAAGCTGATGTTTCGAAAGCCGAAGACTGTAGAAGGATTGTTGATCAAACCATGAGTCACTTTGGCCGAC..................................................................................................................TGGACCATCTGGTTAATAATGCTGGAGTGCACGCGATTGCTCTGTTTGAAGATACAGAGGATGTCACTGATTTTAAATCTGTCATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACATCAACTTCTGGGGTTCTGTTTACATGACTCGCCTTTGCGATTCCATATCTTAGGTATAGTGGGGGAAGGATCATTGTGCTTTCCTCATCTGCTTCTTGGCTGCCTGCTCCAAGATCAAGCTTTTATAAT........................................................................................GCAAGCAAAGCAGCAGTATCTCAATTCTTTGAGACGTTAAGGATTGAGCTGGGGCAGGACATCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E705897" ref_strand="+" ref_description="SGN-E705897 [FA28BG10]">
      <seq>cgtttgcaggttttagagtccataaatataatttcacttgtttgagtctgagctagcccaaatcattagtaacaatgttggttgaactaattcacaagtttctcaatttagtagctcctccagtttctttcttcagcttgcttcttttcttgccaccttttcaatttttcaagtgtgttctctcaattttgggcacactttttagtgaagatgttgctggaaaggtcgtcattatcactggggcttcatctggcattggcgagtatctggcatatgagtacgccaaaagaggagcatgtttaactcttgcagccagaagagatagaagtttgaatgaagtggccgaaggggcacgtgaactaggctcaccagatgttataacaattcaagctgatgtttcgaaagccgaagactgtagaaggattgttgatcaaaccatgagtcactttggccgactggaccatctggttaataatgctggagtgcacgcgattgctctgtttgaagatacagaggatgtcactgattttaaatctgtcatggacatcaacttctggggttctgtttacatgactcgctttgcgattccatatcttaggtatagtgggggaaggatcattgtgctttcctcatctgcttcttggctgcctgctccaagatcaagcttttataatgccagcaaagcagcaatatctcaattctttgagacgttaaggattgagctggggcaggacatcaaaataact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0113N10.1" temp_strand="+" temp_description="C06SLm0113N10.1  AC219227.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0113N10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="122125" stop="124430"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122425" g_stop="122683" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="263" r_length="263" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="122684" i_stop="122975" i_length="292">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="122976" g_stop="123168" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="456" r_length="193" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="123169" i_stop="123282" i_length="114">
            <donor d_prob="0.928" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="123283" g_stop="123368" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="457" r_stop="542" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="123369" i_stop="123838" i_length="470">
            <donor d_prob="0.946" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="123839" g_stop="123970" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="543" r_stop="674" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="123971" i_stop="124058" i_length="88">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="124059" g_stop="124130" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="675" r_stop="746" r_length="72" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0113N10.1" gen_strand="+" ref_id="SGN-E705897" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>742</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0113N10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E705897" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122425" e_stop="122683"/>
          <exon e_start="122976" e_stop="123168"/>
          <exon e_start="123283" e_stop="123368"/>
          <exon e_start="123839" e_stop="123970"/>
          <exon e_start="124059" e_stop="124130"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTTTGCAGGTTTTAGAGTCCATAAATATAATTTCACTTGTTTGAGTCTGAGCTAGCCCAAATCATTAGT----ATGTTGGTTGAACTAATTCACAAGTTTCTCAATTTAGTAGCTCCTCCAGTTTCTTTCTTCAGCTTGCTTCTTTTCTTGCCACCTTTTCAATTTTTCAAGTGTGTTCTCTCAATTTTGGGCACACTTTTTAGTGAAGATGTTGCTGGAAAGGTCGTCATTATCACTGGGGCTTCATCTGGCATTGGCGAGGTTCGTTAATTTCAACTATTTTATTCGTTTTAATTTATGTGATATAGTTCGATTTGACACCGAGTAATAGTACATGGATTTTTAAGTTAGGATCACCTAATTTTAGGGAACTTTAGTTGAATTTTGTTGGGCTTGGGGAATTAGTACTATATAGTATGTATAACTCGTTGATTAATGAATTCCTTTTTTACATGAACGAAAAAATGTGGAGAAGGGGTTGAAAATTTCTACATTTGAAACCCCTTCTATAAACTCTGCAACTGATGAAGGAAAAATTTTCAACAATTTGCAGTATCTGGCATATGAGTACGCCAAAAGAGGAGCATGTTTAACTCTTGCAGCCAGAAGAGATAGAAGTTTGAATGAAGTGGCCGAAGGGGCACGTGAACTAGGCTCACCAGATGTTATAACAATTCAAGCTGATGTTTCGAAAGCCGAAGACTGTAGAAGGATTGTTGATCAAACCATGAGTCACTTTGGCCGACGTCAGTTTTAATTCTAATTCGTTTGATTCTCGTGTTTATAAGTTTTTTTTTTATAGGATGATTAATCATGTTTTATGAACTCTTTTGTGTTGCGTTGTTGTGTTATTAATGCAGTGGACCATCTGGTTAATAATGCTGGAGTGCACGCGATTGCTCTGTTTGAAGATACAGAGGATGTCACTGATTTTAAATCTGTCATGGTAAAGTGGAAATTGATTTTGATTGTTACCTATAAGCAGACAGTTTGAAGTTTTATCACAATTAACCATAAATGAAATTCATGATTACTTCCCCTTTGCAAATGTTGATATCGGTGACGAATAAGTTTACTAGTGCTATGTACTTTCATTGTGTTGAGCTAGAACAGAAACTTTAACTAGGGTCTGAACTACCCGTGGAATACCGAATTTAAACCTGAGAGAATGCTAACAAGAGATTGACCTGGTCATCTGTTGTAGTTTGTCGTTCTTAGTCATTTTCATAGTCGATGACTCAGATGTATATCAATCGGTTGTATTAGGTTATATGTTGAGTTTTTAGGTTGATAAATCAGGATTGACTCGCATCTACTTAGTGTTATATGTGATTTTAACTTGATGAGGAAAAATTGTGCACTACTCATGGACTAAAGTTATAGTAATTGCTATTTACATGTTTCTGTATTTCGCAGGACATCAACTTCTGGGGTTCTGTTTACATGACTCGCTTTGCGATTCCATATCTTAGGTATAGTGGGGGAAGGATCATTGTGCTTTCCTCATCTGCTTCTTGGCTGCCTGCTCCAAGATCAAGCTTTTATAATGTAAGTAGCTAAGTATAAACTTAACTGCTTCCATTGGAAACAGTAACATTTTATCTTGATGACCCTATTGAAAATTTTGTCATGGCAGGCAAGCAAAGCAGCAGTATCTCAATTCTTTGAGACGTTAAGGATTGAGCTGGGGCAGGACATCAAAATAACT</genome_strand>
        <mrna_strand>CGTTTGCAGGTTTTAGAGTCCATAAATATAATTTCACTTGTTTGAGTCTGAGCTAGCCCAAATCATTAGTAACAATGTTGGTTGAACTAATTCACAAGTTTCTCAATTTAGTAGCTCCTCCAGTTTCTTTCTTCAGCTTGCTTCTTTTCTTGCCACCTTTTCAATTTTTCAAGTGTGTTCTCTCAATTTTGGGCACACTTTTTAGTGAAGATGTTGCTGGAAAGGTCGTCATTATCACTGGGGCTTCATCTGGCATTGGCGAG....................................................................................................................................................................................................................................................................................................TATCTGGCATATGAGTACGCCAAAAGAGGAGCATGTTTAACTCTTGCAGCCAGAAGAGATAGAAGTTTGAATGAAGTGGCCGAAGGGGCACGTGAACTAGGCTCACCAGATGTTATAACAATTCAAGCTGATGTTTCGAAAGCCGAAGACTGTAGAAGGATTGTTGATCAAACCATGAGTCACTTTGGCCGAC..................................................................................................................TGGACCATCTGGTTAATAATGCTGGAGTGCACGCGATTGCTCTGTTTGAAGATACAGAGGATGTCACTGATTTTAAATCTGTCATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACATCAACTTCTGGGGTTCTGTTTACATGACTCGCTTTGCGATTCCATATCTTAGGTATAGTGGGGGAAGGATCATTGTGCTTTCCTCATCTGCTTCTTGGCTGCCTGCTCCAAGATCAAGCTTTTATAAT........................................................................................GCCAGCAAAGCAGCAATATCTCAATTCTTTGAGACGTTAAGGATTGAGCTGGGGCAGGACATCAAAATAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E704075" ref_strand="+" ref_description="SGN-E704075 [FA23BB07]">
      <seq>gttttagagtccataaatataatttcacttgtttgagtctgagctagcccaaatcattagtaacaatgttggttgaactaattcacaagtttctcaatttagtagctcctccagtttctttcttcagcttgcttcttttcttgccaccttttcaatttttcaagtgtgttctctcaattttgggcacactttttagtgaagatgttgctggaaaggtcgtcattatcactggggcttcatctggcattggcgagtatctggcatatgagtacgccaaaagaggagcatgtttaactcttgcagccagaagagatagaagtttgaatgaagtggccgaaggggcacgtgaactaggctcaccagatgttataacaattcaagctgatgtttcgaaagccgaagactgtagaaggattgttgatcaaaccatgagtcactttggccgactggaccatctggttaataatgctggagtgcacgcgattgctctgtttgaagatacagaggatgtcactgattttaaatctgtcatggacatcaacttctggggttctgtttacatgactcgctttgcgattccatatcttaggtatagtgggggaaggatcattgtgctttcctcatctgcttcttggctgcctgctccaagatcaagcttttataatgcaagcaaagcagcagtatctcaattctttgagacgttaaggattgagctggggcaggacatcaaaataactctggtgacgcctggctttgttgaatctgaactaacgccaagcaaatacatcggtaaaggtggcgatgtagaggttgatcaagggatgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0113N10.1" temp_strand="+" temp_description="C06SLm0113N10.1  AC219227.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0113N10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="122134" stop="124519"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122434" g_stop="122683" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="254" r_length="254" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="122684" i_stop="122975" i_length="292">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="122976" g_stop="123168" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="447" r_length="193" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="123169" i_stop="123282" i_length="114">
            <donor d_prob="0.928" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="123283" g_stop="123368" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="533" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="123369" i_stop="123838" i_length="470">
            <donor d_prob="0.946" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="123839" g_stop="123970" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="534" r_stop="665" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="123971" i_stop="124058" i_length="88">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="124059" g_stop="124219" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="666" r_stop="826" r_length="161" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0113N10.1" gen_strand="+" ref_id="SGN-E704075" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>822</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0113N10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E704075" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122434" e_stop="122683"/>
          <exon e_start="122976" e_stop="123168"/>
          <exon e_start="123283" e_stop="123368"/>
          <exon e_start="123839" e_stop="123970"/>
          <exon e_start="124059" e_stop="124219"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTAGAGTCCATAAATATAATTTCACTTGTTTGAGTCTGAGCTAGCCCAAATCATTAGT----ATGTTGGTTGAACTAATTCACAAGTTTCTCAATTTAGTAGCTCCTCCAGTTTCTTTCTTCAGCTTGCTTCTTTTCTTGCCACCTTTTCAATTTTTCAAGTGTGTTCTCTCAATTTTGGGCACACTTTTTAGTGAAGATGTTGCTGGAAAGGTCGTCATTATCACTGGGGCTTCATCTGGCATTGGCGAGGTTCGTTAATTTCAACTATTTTATTCGTTTTAATTTATGTGATATAGTTCGATTTGACACCGAGTAATAGTACATGGATTTTTAAGTTAGGATCACCTAATTTTAGGGAACTTTAGTTGAATTTTGTTGGGCTTGGGGAATTAGTACTATATAGTATGTATAACTCGTTGATTAATGAATTCCTTTTTTACATGAACGAAAAAATGTGGAGAAGGGGTTGAAAATTTCTACATTTGAAACCCCTTCTATAAACTCTGCAACTGATGAAGGAAAAATTTTCAACAATTTGCAGTATCTGGCATATGAGTACGCCAAAAGAGGAGCATGTTTAACTCTTGCAGCCAGAAGAGATAGAAGTTTGAATGAAGTGGCCGAAGGGGCACGTGAACTAGGCTCACCAGATGTTATAACAATTCAAGCTGATGTTTCGAAAGCCGAAGACTGTAGAAGGATTGTTGATCAAACCATGAGTCACTTTGGCCGACGTCAGTTTTAATTCTAATTCGTTTGATTCTCGTGTTTATAAGTTTTTTTTTTATAGGATGATTAATCATGTTTTATGAACTCTTTTGTGTTGCGTTGTTGTGTTATTAATGCAGTGGACCATCTGGTTAATAATGCTGGAGTGCACGCGATTGCTCTGTTTGAAGATACAGAGGATGTCACTGATTTTAAATCTGTCATGGTAAAGTGGAAATTGATTTTGATTGTTACCTATAAGCAGACAGTTTGAAGTTTTATCACAATTAACCATAAATGAAATTCATGATTACTTCCCCTTTGCAAATGTTGATATCGGTGACGAATAAGTTTACTAGTGCTATGTACTTTCATTGTGTTGAGCTAGAACAGAAACTTTAACTAGGGTCTGAACTACCCGTGGAATACCGAATTTAAACCTGAGAGAATGCTAACAAGAGATTGACCTGGTCATCTGTTGTAGTTTGTCGTTCTTAGTCATTTTCATAGTCGATGACTCAGATGTATATCAATCGGTTGTATTAGGTTATATGTTGAGTTTTTAGGTTGATAAATCAGGATTGACTCGCATCTACTTAGTGTTATATGTGATTTTAACTTGATGAGGAAAAATTGTGCACTACTCATGGACTAAAGTTATAGTAATTGCTATTTACATGTTTCTGTATTTCGCAGGACATCAACTTCTGGGGTTCTGTTTACATGACTCGCTTTGCGATTCCATATCTTAGGTATAGTGGGGGAAGGATCATTGTGCTTTCCTCATCTGCTTCTTGGCTGCCTGCTCCAAGATCAAGCTTTTATAATGTAAGTAGCTAAGTATAAACTTAACTGCTTCCATTGGAAACAGTAACATTTTATCTTGATGACCCTATTGAAAATTTTGTCATGGCAGGCAAGCAAAGCAGCAGTATCTCAATTCTTTGAGACGTTAAGGATTGAGCTGGGGCAGGACATCAAAATAACTCTGGTGACGCCTGGCTTTGTTGAATCTGAACTAACGCAAGGCAAATACATCGGTAAGGGTGGCGATGTAGAGGTTGATCAAGGAATGAG</genome_strand>
        <mrna_strand>GTTTTAGAGTCCATAAATATAATTTCACTTGTTTGAGTCTGAGCTAGCCCAAATCATTAGTAACAATGTTGGTTGAACTAATTCACAAGTTTCTCAATTTAGTAGCTCCTCCAGTTTCTTTCTTCAGCTTGCTTCTTTTCTTGCCACCTTTTCAATTTTTCAAGTGTGTTCTCTCAATTTTGGGCACACTTTTTAGTGAAGATGTTGCTGGAAAGGTCGTCATTATCACTGGGGCTTCATCTGGCATTGGCGAG....................................................................................................................................................................................................................................................................................................TATCTGGCATATGAGTACGCCAAAAGAGGAGCATGTTTAACTCTTGCAGCCAGAAGAGATAGAAGTTTGAATGAAGTGGCCGAAGGGGCACGTGAACTAGGCTCACCAGATGTTATAACAATTCAAGCTGATGTTTCGAAAGCCGAAGACTGTAGAAGGATTGTTGATCAAACCATGAGTCACTTTGGCCGAC..................................................................................................................TGGACCATCTGGTTAATAATGCTGGAGTGCACGCGATTGCTCTGTTTGAAGATACAGAGGATGTCACTGATTTTAAATCTGTCATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACATCAACTTCTGGGGTTCTGTTTACATGACTCGCTTTGCGATTCCATATCTTAGGTATAGTGGGGGAAGGATCATTGTGCTTTCCTCATCTGCTTCTTGGCTGCCTGCTCCAAGATCAAGCTTTTATAAT........................................................................................GCAAGCAAAGCAGCAGTATCTCAATTCTTTGAGACGTTAAGGATTGAGCTGGGGCAGGACATCAAAATAACTCTGGTGACGCCTGGCTTTGTTGAATCTGAACTAACGCCAAGCAAATACATCGGTAAAGGTGGCGATGTAGAGGTTGATCAAGGGATGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E720827" ref_strand="+" ref_description="SGN-E720827 [FC11DH06]">
      <seq>ttggcggcaaatcggccgaattccatggggatccgatgagcccaaatcattagtatgttggttgaactaattcacaagtttctcaatttagtagctcctccagtttctttcttcagcttgcttcttttcttgccaccttttcaatttttcaagtgtgttctctcaattttgggcacactttttagtgaagatgttgctggaaaggtcgtcattatcactggggcttcatctggcattggcgagtatctggcatatgagtacgccaaaagaggagcatgtttaactcttgcagccagaaaagatagaagtttgaatgaagtggccgaaggggcacgtgaactaggctcaccagatgttataacaattcaagctgatgtttcgaaagccgaaaactgtaaaaggattgttgatcaaaccatgagtcactttggccgactggaccatctggttaataatgctggagtgcacgcgattgctctgtttgaagatacagaggatgtcactgattttaaatctgtcatggacatcaacttctggggttctgtttacatgactcgctttgcgattccatatcttaggtatagtgggggaaggatcattgtgctttcctcatctgcttcttggctgcctgctccaagatcaagcttttataatgcaagcaaagcagcagtatctcaattctttgagacgttaaggattgagctggggcaggacatcaaaataactctggtgacgcctggctttgttgaatctgaactaacgcaaggcaaatacatcggtaagggtggcgatgtaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0113N10.1" temp_strand="+" temp_description="C06SLm0113N10.1  AC219227.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0113N10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="122167" stop="124502"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122481" g_stop="122683" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="243" r_length="203" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="122684" i_stop="122975" i_length="292">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="122976" g_stop="123168" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="436" r_length="193" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="123169" i_stop="123282" i_length="114">
            <donor d_prob="0.928" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="123283" g_stop="123368" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="522" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="123369" i_stop="123838" i_length="470">
            <donor d_prob="0.946" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="123839" g_stop="123970" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="523" r_stop="654" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="123971" i_stop="124058" i_length="88">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="124059" g_stop="124202" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="655" r_stop="798" r_length="144" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0113N10.1" gen_strand="+" ref_id="SGN-E720827" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>758</cumulative_length_of_scored_exons>
        <coverage percentage="0.950" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0113N10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E720827" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122481" e_stop="122683"/>
          <exon e_start="122976" e_stop="123168"/>
          <exon e_start="123283" e_stop="123368"/>
          <exon e_start="123839" e_stop="123970"/>
          <exon e_start="124059" e_stop="124202"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCAAATCATTAGTATGTTGGTTGAACTAATTCACAAGTTTCTCAATTTAGTAGCTCCTCCAGTTTCTTTCTTCAGCTTGCTTCTTTTCTTGCCACCTTTTCAATTTTTCAAGTGTGTTCTCTCAATTTTGGGCACACTTTTTAGTGAAGATGTTGCTGGAAAGGTCGTCATTATCACTGGGGCTTCATCTGGCATTGGCGAGGTTCGTTAATTTCAACTATTTTATTCGTTTTAATTTATGTGATATAGTTCGATTTGACACCGAGTAATAGTACATGGATTTTTAAGTTAGGATCACCTAATTTTAGGGAACTTTAGTTGAATTTTGTTGGGCTTGGGGAATTAGTACTATATAGTATGTATAACTCGTTGATTAATGAATTCCTTTTTTACATGAACGAAAAAATGTGGAGAAGGGGTTGAAAATTTCTACATTTGAAACCCCTTCTATAAACTCTGCAACTGATGAAGGAAAAATTTTCAACAATTTGCAGTATCTGGCATATGAGTACGCCAAAAGAGGAGCATGTTTAACTCTTGCAGCCAGAAGAGATAGAAGTTTGAATGAAGTGGCCGAAGGGGCACGTGAACTAGGCTCACCAGATGTTATAACAATTCAAGCTGATGTTTCGAAAGCCGAAGACTGTAGAAGGATTGTTGATCAAACCATGAGTCACTTTGGCCGACGTCAGTTTTAATTCTAATTCGTTTGATTCTCGTGTTTATAAGTTTTTTTTTTATAGGATGATTAATCATGTTTTATGAACTCTTTTGTGTTGCGTTGTTGTGTTATTAATGCAGTGGACCATCTGGTTAATAATGCTGGAGTGCACGCGATTGCTCTGTTTGAAGATACAGAGGATGTCACTGATTTTAAATCTGTCATGGTAAAGTGGAAATTGATTTTGATTGTTACCTATAAGCAGACAGTTTGAAGTTTTATCACAATTAACCATAAATGAAATTCATGATTACTTCCCCTTTGCAAATGTTGATATCGGTGACGAATAAGTTTACTAGTGCTATGTACTTTCATTGTGTTGAGCTAGAACAGAAACTTTAACTAGGGTCTGAACTACCCGTGGAATACCGAATTTAAACCTGAGAGAATGCTAACAAGAGATTGACCTGGTCATCTGTTGTAGTTTGTCGTTCTTAGTCATTTTCATAGTCGATGACTCAGATGTATATCAATCGGTTGTATTAGGTTATATGTTGAGTTTTTAGGTTGATAAATCAGGATTGACTCGCATCTACTTAGTGTTATATGTGATTTTAACTTGATGAGGAAAAATTGTGCACTACTCATGGACTAAAGTTATAGTAATTGCTATTTACATGTTTCTGTATTTCGCAGGACATCAACTTCTGGGGTTCTGTTTACATGACTCGCTTTGCGATTCCATATCTTAGGTATAGTGGGGGAAGGATCATTGTGCTTTCCTCATCTGCTTCTTGGCTGCCTGCTCCAAGATCAAGCTTTTATAATGTAAGTAGCTAAGTATAAACTTAACTGCTTCCATTGGAAACAGTAACATTTTATCTTGATGACCCTATTGAAAATTTTGTCATGGCAGGCAAGCAAAGCAGCAGTATCTCAATTCTTTGAGACGTTAAGGATTGAGCTGGGGCAGGACATCAAAATAACTCTGGTGACGCCTGGCTTTGTTGAATCTGAACTAACGCAAGGCAAATACATCGGTAAGGGTGGCGATGTAGAG</genome_strand>
        <mrna_strand>CCCAAATCATTAGTATGTTGGTTGAACTAATTCACAAGTTTCTCAATTTAGTAGCTCCTCCAGTTTCTTTCTTCAGCTTGCTTCTTTTCTTGCCACCTTTTCAATTTTTCAAGTGTGTTCTCTCAATTTTGGGCACACTTTTTAGTGAAGATGTTGCTGGAAAGGTCGTCATTATCACTGGGGCTTCATCTGGCATTGGCGAG....................................................................................................................................................................................................................................................................................................TATCTGGCATATGAGTACGCCAAAAGAGGAGCATGTTTAACTCTTGCAGCCAGAAAAGATAGAAGTTTGAATGAAGTGGCCGAAGGGGCACGTGAACTAGGCTCACCAGATGTTATAACAATTCAAGCTGATGTTTCGAAAGCCGAAAACTGTAAAAGGATTGTTGATCAAACCATGAGTCACTTTGGCCGAC..................................................................................................................TGGACCATCTGGTTAATAATGCTGGAGTGCACGCGATTGCTCTGTTTGAAGATACAGAGGATGTCACTGATTTTAAATCTGTCATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACATCAACTTCTGGGGTTCTGTTTACATGACTCGCTTTGCGATTCCATATCTTAGGTATAGTGGGGGAAGGATCATTGTGCTTTCCTCATCTGCTTCTTGGCTGCCTGCTCCAAGATCAAGCTTTTATAAT........................................................................................GCAAGCAAAGCAGCAGTATCTCAATTCTTTGAGACGTTAAGGATTGAGCTGGGGCAGGACATCAAAATAACTCTGGTGACGCCTGGCTTTGTTGAATCTGAACTAACGCAAGGCAAATACATCGGTAAGGGTGGCGATGTAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E711944" ref_strand="+" ref_description="SGN-E711944 [FB03BG11]">
      <seq>ccgttacgaggggattgttgatcaaaccatgagtcactttggccgactggaccatctggttaataatgctggagtgcacgcgattgctctgtttgaagatacagaggatgtcactgattttaaatctgtcatggacatcaacttctggggttctgtttacatgactcgctttgcgattccatatcttaggtatagtgggggaaggatcattgtgctttcctcatctgcttcttggctgcctgctccaagatcaagcttttataatgcaagcaaagcagcagtatctcaattctttgagacgttaaggattgagctggggcaggacatcaaaataactctggtgacgcctggctttgttgaatctgaactaacgcaaggcaaatacatcggtaagggtggcgatgtagaggttgatcaaggaatgagggatgtattcataggcgcgactccagtagccaaagttgaatcatgtgccaagacaattgtcaatagtgcttgccgaggtgaaaggtatgttacaataccatcttggtttcgggttagctacttgtggaaggtgtttgccccggaggtgttagaatggatgtacaggctgatgcatctcaccggaacttcaccagaggatgcacttaacaagaaagtagcggattataccggcgcgcaaaacgtgttgtatcccgagactatcaggactggagaaaccaagactgattaatgttgtgatgtaaaaagaggtagtaagtgtttgtat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0113N10.1" temp_strand="+" temp_description="C06SLm0113N10.1  AC219227.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0113N10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="122833" stop="125012"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123134" g_stop="123168" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="47" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="123169" i_stop="123282" i_length="114">
            <donor d_prob="0.928" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="123283" g_stop="123368" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="133" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="123369" i_stop="123838" i_length="470">
            <donor d_prob="0.946" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="123839" g_stop="123970" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="265" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="123971" i_stop="124058" i_length="88">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="124059" g_stop="124223" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="430" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="124224" i_stop="124391" i_length="168">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="124392" g_stop="124712" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="431" r_stop="751" r_length="321" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0113N10.1" gen_strand="+" ref_id="SGN-E711944" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>739</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0113N10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E711944" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123134" e_stop="123168"/>
          <exon e_start="123283" e_stop="123368"/>
          <exon e_start="123839" e_stop="123970"/>
          <exon e_start="124059" e_stop="124223"/>
          <exon e_start="124392" e_stop="124712"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTGTTGATCAAACCATGAGTCACTTTGGCCGACGTCAGTTTTAATTCTAATTCGTTTGATTCTCGTGTTTATAAGTTTTTTTTTTATAGGATGATTAATCATGTTTTATGAACTCTTTTGTGTTGCGTTGTTGTGTTATTAATGCAGTGGACCATCTGGTTAATAATGCTGGAGTGCACGCGATTGCTCTGTTTGAAGATACAGAGGATGTCACTGATTTTAAATCTGTCATGGTAAAGTGGAAATTGATTTTGATTGTTACCTATAAGCAGACAGTTTGAAGTTTTATCACAATTAACCATAAATGAAATTCATGATTACTTCCCCTTTGCAAATGTTGATATCGGTGACGAATAAGTTTACTAGTGCTATGTACTTTCATTGTGTTGAGCTAGAACAGAAACTTTAACTAGGGTCTGAACTACCCGTGGAATACCGAATTTAAACCTGAGAGAATGCTAACAAGAGATTGACCTGGTCATCTGTTGTAGTTTGTCGTTCTTAGTCATTTTCATAGTCGATGACTCAGATGTATATCAATCGGTTGTATTAGGTTATATGTTGAGTTTTTAGGTTGATAAATCAGGATTGACTCGCATCTACTTAGTGTTATATGTGATTTTAACTTGATGAGGAAAAATTGTGCACTACTCATGGACTAAAGTTATAGTAATTGCTATTTACATGTTTCTGTATTTCGCAGGACATCAACTTCTGGGGTTCTGTTTACATGACTCGCTTTGCGATTCCATATCTTAGGTATAGTGGGGGAAGGATCATTGTGCTTTCCTCATCTGCTTCTTGGCTGCCTGCTCCAAGATCAAGCTTTTATAATGTAAGTAGCTAAGTATAAACTTAACTGCTTCCATTGGAAACAGTAACATTTTATCTTGATGACCCTATTGAAAATTTTGTCATGGCAGGCAAGCAAAGCAGCAGTATCTCAATTCTTTGAGACGTTAAGGATTGAGCTGGGGCAGGACATCAAAATAACTCTGGTGACGCCTGGCTTTGTTGAATCTGAACTAACGCAAGGCAAATACATCGGTAAGGGTGGCGATGTAGAGGTTGATCAAGGAATGAGGGATGTAAGTTTTCCTCTTTGCTACTAGTTCTTGCATTTTCATCCGAGCTAGGGACTATGTTTCTTACATAATCTATTCGGTTTAGGCTCATGTTTCCTCATTTGCTTCTACAAAGAGTTACATACATTACTCGTTTTGAGGAAGAAAGTGAACGTTTTTGTGTGAACTTAGGTATTCATAGGCGCGACTCCAGTAGCCAAAGTTGAATCATGTGCCAAGACAATTGTCAATAGTGCTTGCCGAGGTGAAAGGTATGTTACAATACCATCTTGGTTTCGGGTTAGCTACTTGTGGAAGGTGTTTGCCCCGGAGGTGTTAGAATGGATGTACAGGCTGATGCATCTCACCGGAACTTCACCAGAGGATGCACTTAGCAAGAAAGTAGCGGATTATACCGGCGCGCAAAACGTGTTGTATCCCGAGACTATCAGGACTGGAGAAACAAAGACTGATTAATGTTGTGATGTAAAAAGAGGTAGTAAGTGTTTGTAT</genome_strand>
        <mrna_strand>GATTGTTGATCAAACCATGAGTCACTTTGGCCGAC..................................................................................................................TGGACCATCTGGTTAATAATGCTGGAGTGCACGCGATTGCTCTGTTTGAAGATACAGAGGATGTCACTGATTTTAAATCTGTCATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACATCAACTTCTGGGGTTCTGTTTACATGACTCGCTTTGCGATTCCATATCTTAGGTATAGTGGGGGAAGGATCATTGTGCTTTCCTCATCTGCTTCTTGGCTGCCTGCTCCAAGATCAAGCTTTTATAAT........................................................................................GCAAGCAAAGCAGCAGTATCTCAATTCTTTGAGACGTTAAGGATTGAGCTGGGGCAGGACATCAAAATAACTCTGGTGACGCCTGGCTTTGTTGAATCTGAACTAACGCAAGGCAAATACATCGGTAAGGGTGGCGATGTAGAGGTTGATCAAGGAATGAGGGAT........................................................................................................................................................................GTATTCATAGGCGCGACTCCAGTAGCCAAAGTTGAATCATGTGCCAAGACAATTGTCAATAGTGCTTGCCGAGGTGAAAGGTATGTTACAATACCATCTTGGTTTCGGGTTAGCTACTTGTGGAAGGTGTTTGCCCCGGAGGTGTTAGAATGGATGTACAGGCTGATGCATCTCACCGGAACTTCACCAGAGGATGCACTTAACAAGAAAGTAGCGGATTATACCGGCGCGCAAAACGTGTTGTATCCCGAGACTATCAGGACTGGAGAAACCAAGACTGATTAATGTTGTGATGTAAAAAGAGGTAGTAAGTGTTTGTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E711723" ref_strand="+" ref_description="SGN-E711723 [FB02DB08]">
      <seq>ccattaaaggtatnntaattctttgagaagttaaggattgagcctttggcaggacatcaaaataactctggtgacgcctggntttgttgaatctgaactaacgcaaggcaaatacatccgtaagggtggcgatgtagaggttgatcaaggaatgagggatgtattcataggcgcgactccagtagccaaagttgaatcatgtgccaagacaattgtcaatagtgcttgccgaggtgaaaggtatgttacaataccatcttggtttcgggttagctacttgtggaaggtgtttgccccggaggtgttagaatggatgtacaggctgatgcatctcaccggaacttcaccagaggatgcacttagcaagaaagtagcggattataccggcgcgcaaaacgtgttgtatcccgagactatcaggactggagaaacaaagactgattaatgttgtgatgtaaaaagaggtagtaagtgtttgtatcgtctcctgtaatttcctaaatcacgagtttcaattagaaagacctttgtgtggttgtttgtattgtgactatgaataaaattgagcatgtttcngtanaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0113N10-0ouk2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0113N10.1" temp_strand="+" temp_description="C06SLm0113N10.1  AC219227.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0113N10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="123781" stop="125119"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="124065" g_stop="124223" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="160" r_length="160" r_score="0.893"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="124224" i_stop="124391" i_length="168">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="124392" g_stop="124807" g_length="416"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="576" r_length="416" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="579" polyA_stop="596"/>
      <MATCH_line gen_id="C06SLm0113N10.1" gen_strand="+" ref_id="SGN-E711723" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>575</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0113N10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E711723" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="124065" e_stop="124223"/>
          <exon e_start="124392" e_stop="124807"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGCAGCAGTATCTCAATTCTTTGAGACGTTAAGGATTGAG-CTGGGGCAGGACATCAAAATAACTCTGGTGACGCCTGGCTTTGTTGAATCTGAACTAACGCAAGGCAAATACATCGGTAAGGGTGGCGATGTAGAGGTTGATCAAGGAATGAGGGATGTAAGTTTTCCTCTTTGCTACTAGTTCTTGCATTTTCATCCGAGCTAGGGACTATGTTTCTTACATAATCTATTCGGTTTAGGCTCATGTTTCCTCATTTGCTTCTACAAAGAGTTACATACATTACTCGTTTTGAGGAAGAAAGTGAACGTTTTTGTGTGAACTTAGGTATTCATAGGCGCGACTCCAGTAGCCAAAGTTGAATCATGTGCCAAGACAATTGTCAATAGTGCTTGCCGAGGTGAAAGGTATGTTACAATACCATCTTGGTTTCGGGTTAGCTACTTGTGGAAGGTGTTTGCCCCGGAGGTGTTAGAATGGATGTACAGGCTGATGCATCTCACCGGAACTTCACCAGAGGATGCACTTAGCAAGAAAGTAGCGGATTATACCGGCGCGCAAAACGTGTTGTATCCCGAGACTATCAGGACTGGAGAAACAAAGACTGATTAATGTTGTGATGTAAAAAGAGGTAGTAAGTGTTTGTATCGTCTCCTGTAATTTCCTAAATCACGAGTTTCAATTAGAAAGACCTTTGTGTGGTTGTTTGTATTGTGACTATGAATAAAATTGAGCATGTTTCA</genome_strand>
        <mrna_strand>CCATTAAAGGTATNNTAATTCTTTGAGAAGTTAAGGATTGAGCCTTTGGCAGGACATCAAAATAACTCTGGTGACGCCTGGNTTTGTTGAATCTGAACTAACGCAAGGCAAATACATCCGTAAGGGTGGCGATGTAGAGGTTGATCAAGGAATGAGGGAT........................................................................................................................................................................GTATTCATAGGCGCGACTCCAGTAGCCAAAGTTGAATCATGTGCCAAGACAATTGTCAATAGTGCTTGCCGAGGTGAAAGGTATGTTACAATACCATCTTGGTTTCGGGTTAGCTACTTGTGGAAGGTGTTTGCCCCGGAGGTGTTAGAATGGATGTACAGGCTGATGCATCTCACCGGAACTTCACCAGAGGATGCACTTAGCAAGAAAGTAGCGGATTATACCGGCGCGCAAAACGTGTTGTATCCCGAGACTATCAGGACTGGAGAAACAAAGACTGATTAATGTTGTGATGTAAAAAGAGGTAGTAAGTGTTTGTATCGTCTCCTGTAATTTCCTAAATCACGAGTTTCAATTAGAAAGACCTTTGTGTGGTTGTTTGTATTGTGACTATGAATAAAATTGAGCATGTTTCN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>203</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="746" PGL_stop="1202"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="746" e_stop="1202"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.972"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.972">
            <gDNA_exon_boundary e_start="746" e_stop="1202" e_length="457"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="746" stop="1178"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349240" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="918" stop="1202"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E545312" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="918" stop="1199"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E545311" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="919" stop="1202"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311813" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAATATGAAGTCCAAGTGAGCAAAGAAGAAGTGACGAAAGCCATAAAAGAAGTGATGGACAAAGAGAAAAAAGCAAATAATAGGAGAATAAGAGCCAAAGAAGTTAGAGAAATGGCAAAAAAAGCTATAGAAGAAGGTGGATCTTCTCATCTCAGTTTGACACTACTAATCAAAGAAGTACAAGAATTCAACTAAACCAATTAGCTTAAAATGATTATGCACAAGCACGCAGTGTACTTTCTTTGATTTTTATGTTTTTGGTAGCGCAAGCGAAATCAGGGAAGGGATTAGAAAGTGAAGAATCAAACCCTCACAGGTGAAATTCAGACAACCAATCAACTGAACTACTAAGATTCCCCAATTATTTTTGTACACGAATACGACAAGACACAGTTATATATTAATTTTGCCAGTTTCAACTTTCAACAATGAGTTTTATATTAAGTATAATTAAGTG</gDNA_template>
            <first_frame> K  Y  E  V  Q  V  S  K  E  E  V  T  K  A  I  K  E  V  M  D  K  E  K  K  A  N  N  R  R  I  R  A  K  E  V  R  E  M  A  K  K  A  I  E  E  G  G  S  S  H  L  S  L  T  L  L  I  K  E  V  Q  E  F  N  *  T  N  *  L  K  M  I  M  H  K  H  A  V  Y  F  L  *  F  L  C  F  W  *  R  K  R  N  Q  G  R  D  *  K  V  K  N  Q  T  L  T  G  E  I  Q  T  T  N  Q  L  N  Y  *  D  S  P  I  I  F  V  H  E  Y  D  K  T  Q  L  Y  I  N  F  A  S  F  N  F  Q  Q  *  V  L  Y  *  V  *  L  S  </first_frame>
            <second_frame>  N  M  K  S  K  *  A  K  K  K  *  R  K  P  *  K  K  *  W  T  K  R  K  K  Q  I  I  G  E  *  E  P  K  K  L  E  K  W  Q  K  K  L  *  K  K  V  D  L  L  I  S  V  *  H  Y  *  S  K  K  Y  K  N  S  T  K  P  I  S  L  K  *  L  C  T  S  T  Q  C  T  F  F  D  F  Y  V  F  G  S  A  S  E  I  R  E  G  I  R  K  *  R  I  K  P  S  Q  V  K  F  R  Q  P  I  N  *  T  T  K  I  P  Q  L  F  L  Y  T  N  T  T  R  H  S  Y  I  L  I  L  P  V  S  T  F  N  N  E  F  Y  I  K  Y  N  *  V </second_frame>
            <third_frame>   I  *  S  P  S  E  Q  R  R  S  D  E  S  H  K  R  S  D  G  Q  R  E  K  S  K  *  *  E  N  K  S  Q  R  S  *  R  N  G  K  K  S  Y  R  R  R  W  I  F  S  S  Q  F  D  T  T  N  Q  R  S  T  R  I  Q  L  N  Q  L  A  *  N  D  Y  A  Q  A  R  S  V  L  S  L  I  F  M  F  L  V  A  Q  A  K  S  G  K  G  L  E  S  E  E  S  N  P  H  R  *  N  S  D  N  Q  S  T  E  L  L  R  F  P  N  Y  F  C  T  R  I  R  Q  D  T  V  I  Y  *  F  C  Q  F  Q  L  S  T  M  S  F  I  L  S  I  I  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0113N10.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="746" stop="940"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KYEVQVSKEEVTKAIKEVMDKEKKANNRRIRAKEVREMAKKAIEEGGSSHLSLTLLIKEVQEFN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="11629" PGL_stop="10346"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="11600" e_stop="11371"/>
            <exon e_start="10985" e_stop="10346"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.848" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="11600" e_stop="11371" e_length="230"/>
          </exon>
          <intron i_serial="1" don_prob="0.848" acc_prob="1.000">
            <gDNA_intron_boundary i_start="11370" i_stop="10986" i_length="385"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="10985" e_stop="10346" e_length="640"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11600" stop="11371"/>
              <exon start="10985" stop="10377"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722693" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11587" stop="11371"/>
              <exon start="10985" stop="10364"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722256" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11587" stop="11371"/>
              <exon start="10985" stop="10411"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719791" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11587" stop="11371"/>
              <exon start="10985" stop="10414"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723381" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11586" stop="11371"/>
              <exon start="10985" stop="10371"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719337" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11586" stop="11371"/>
              <exon start="10985" stop="10384"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717788" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11586" stop="11371"/>
              <exon start="10985" stop="10384"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724482" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11586" stop="11371"/>
              <exon start="10985" stop="10396"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718025" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11585" stop="11371"/>
              <exon start="10985" stop="10499"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721155" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11582" stop="11371"/>
              <exon start="10985" stop="10462"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718075" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11567" stop="11371"/>
              <exon start="10985" stop="10394"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716490" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11565" stop="11371"/>
              <exon start="10985" stop="10394"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715853" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11565" stop="11371"/>
              <exon start="10985" stop="10507"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710326" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11564" stop="11371"/>
              <exon start="10985" stop="10389"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712863" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11564" stop="11371"/>
              <exon start="10985" stop="10393"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715210" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11564" stop="11371"/>
              <exon start="10985" stop="10625"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395081" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11564" stop="11371"/>
              <exon start="10985" stop="10716"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392316" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11564" stop="11371"/>
              <exon start="10985" stop="10720"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396393" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11564" stop="11371"/>
              <exon start="10985" stop="10729"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392554" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11563" stop="11371"/>
              <exon start="10985" stop="10499"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274801" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11563" stop="11371"/>
              <exon start="10985" stop="10542"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273382" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11563" stop="11371"/>
              <exon start="10985" stop="10559"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276696" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11559" stop="11371"/>
              <exon start="10985" stop="10400"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720496" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11559" stop="11371"/>
              <exon start="10985" stop="10473"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723595" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11558" stop="11371"/>
              <exon start="10985" stop="10384"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721841" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11558" stop="11371"/>
              <exon start="10985" stop="10396"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703939" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11556" stop="11371"/>
              <exon start="10985" stop="10528"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E622522" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11554" stop="11371"/>
              <exon start="10985" stop="10380"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711908" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11553" stop="11371"/>
              <exon start="10985" stop="10644"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253957" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11550" stop="11371"/>
              <exon start="10985" stop="10699"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698453" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11548" stop="11371"/>
              <exon start="10985" stop="10396"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712427" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11546" stop="11371"/>
              <exon start="10985" stop="10382"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714971" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11546" stop="11371"/>
              <exon start="10985" stop="10409"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261051" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11546" stop="11371"/>
              <exon start="10985" stop="10521"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263643" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11546" stop="11371"/>
              <exon start="10985" stop="10546"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254444" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11546" stop="11371"/>
              <exon start="10985" stop="10603"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260009" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11546" stop="11371"/>
              <exon start="10985" stop="10609"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254315" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11535" stop="11371"/>
              <exon start="10985" stop="10407"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369447" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11534" stop="11371"/>
              <exon start="10985" stop="10469"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369448" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11534" stop="11371"/>
              <exon start="10985" stop="10546"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247047" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11526" stop="11371"/>
              <exon start="10985" stop="10381"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714170" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11509" stop="11371"/>
              <exon start="10985" stop="10558"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249440" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11489" stop="11371"/>
              <exon start="10985" stop="10587"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723674" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11400" stop="11371"/>
              <exon start="10985" stop="10764"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246754" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10718" stop="10346"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392315" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10639" stop="10357"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392631" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GATCGCTATAACGTATACTTTTCTCTTCTTATAATTATTAGCTCATAATTTACTTATTATTACTGTTTAATAGCCATTTTTAAACATCTTCTTTTTCAGAATTGCATTTGCATGGCCACTAATTTACAGAAACGTGGACTGGTAAGCTTGGGGAAACGATTTGTGAACCAGATAACTTATTCAACTTCTCGAAATTCTGCCAACTCATCATCTACTGCGCTCTCTGGCAG : GAATGTGGTGCACACGTCAGTGTATGACAAGAATATAGAGGAATATGTGTCATCGTGGGTACCTGATGAAATAATCGAGGTAGAATCGGACAAATACAAGTACTGGACTCCTCATCCCCAAACAGGGGTGTTTGGGCCAGCTACTGATCACATTATAAAATATGGTTCTCAATTCTCCACGGTAGATTCTGTGTTGGAACAAAAGACATTTTTTCGTGATTTCGAGGATCTGGAGAAGCCTAGTTATCCTTAAGTTTCAGAAAACATCACAACAGAAAATACTACTAGCAGGGAAGGTGAAAGAGGTGTTTCGTTTGTTGTGTTCTATGAATATGTGATATGTTTAGTTAATTAATGGAAGTATAATATGGAGTATGTATAGAATAAAACTAGCTACTCTGTGTGGGCTGCTTTTAAATGGTCATATGGTGCAATACATACGATCAAACTTCTCTGTAATATCGTTTGTTTGTCCAAATTAAAAAAAAAAGTTAGTATTGTATAGAGAATATGTAATAGAACATAAGATTAAAAGTTGGTTCCAAGAAGCTATATTGTTACAATGAAATCTATATATATAATAAATCTAAATCAAGAATTGCTGATGTGGCAATGCCTCTAAGGGCTGAATTTTTTATTT</gDNA_template>
            <first_frame> D  R  Y  N  V  Y  F  S  L  L  I  I  I  S  S  *  F  T  Y  Y  Y  C  L  I  A  I  F  K  H  L  L  F  Q  N  C  I  C  M  A  T  N  L  Q  K  R  G  L  V  S  L  G  K  R  F  V  N  Q  I  T  Y  S  T  S  R  N  S  A  N  S  S  S  T  A  L  S  G  R :   N  V  V  H  T  S  V  Y  D  K  N  I  E  E  Y  V  S  S  W  V  P  D  E  I  I  E  V  E  S  D  K  Y  K  Y  W  T  P  H  P  Q  T  G  V  F  G  P  A  T  D  H  I  I  K  Y  G  S  Q  F  S  T  V  D  S  V  L  E  Q  K  T  F  F  R  D  F  E  D  L  E  K  P  S  Y  P  *  V  S  E  N  I  T  T  E  N  T  T  S  R  E  G  E  R  G  V  S  F  V  V  F  Y  E  Y  V  I  C  L  V  N  *  W  K  Y  N  M  E  Y  V  *  N  K  T  S  Y  S  V  W  A  A  F  K  W  S  Y  G  A  I  H  T  I  K  L  L  C  N  I  V  C  L  S  K  L  K  K  K  V  S  I  V  *  R  I  C  N  R  T  *  D  *  K  L  V  P  R  S  Y  I  V  T  M  K  S  I  Y  I  I  N  L  N  Q  E  L  L  M  W  Q  C  L  *  G  L  N  F  L  F </first_frame>
            <second_frame>  I  A  I  T  Y  T  F  L  F  L  *  L  L  A  H  N  L  L  I  I  T  V  *  *  P  F  L  N  I  F  F  F  R  I  A  F  A  W  P  L  I  Y  R  N  V  D  W  *  A  W  G  N  D  L  *  T  R  *  L  I  Q  L  L  E  I  L  P  T  H  H  L  L  R  S  L  A   : G  M  W  C  T  R  Q  C  M  T  R  I  *  R  N  M  C  H  R  G  Y  L  M  K  *  S  R  *  N  R  T  N  T  S  T  G  L  L  I  P  K  Q  G  C  L  G  Q  L  L  I  T  L  *  N  M  V  L  N  S  P  R  *  I  L  C  W  N  K  R  H  F  F  V  I  S  R  I  W  R  S  L  V  I  L  K  F  Q  K  T  S  Q  Q  K  I  L  L  A  G  K  V  K  E  V  F  R  L  L  C  S  M  N  M  *  Y  V  *  L  I  N  G  S  I  I  W  S  M  Y  R  I  K  L  A  T  L  C  G  L  L  L  N  G  H  M  V  Q  Y  I  R  S  N  F  S  V  I  S  F  V  C  P  N  *  K  K  K  L  V  L  Y  R  E  Y  V  I  E  H  K  I  K  S  W  F  Q  E  A  I  L  L  Q  *  N  L  Y  I  *  *  I  *  I  K  N  C  *  C  G  N  A  S  K  G  *  I  F  Y   </second_frame>
            <third_frame>   S  L  *  R  I  L  F  S  S  Y  N  Y  *  L  I  I  Y  L  L  L  L  F  N  S  H  F  *  T  S  S  F  S  E  L  H  L  H  G  H  *  F  T  E  T  W  T  G  K  L  G  E  T  I  C  E  P  D  N  L  F  N  F  S  K  F  C  Q  L  I  I  Y  C  A  L  W  Q  :  E  C  G  A  H  V  S  V  *  Q  E  Y  R  G  I  C  V  I  V  G  T  *  *  N  N  R  G  R  I  G  Q  I  Q  V  L  D  S  S  S  P  N  R  G  V  W  A  S  Y  *  S  H  Y  K  I  W  F  S  I  L  H  G  R  F  C  V  G  T  K  D  I  F  S  *  F  R  G  S  G  E  A  *  L  S  L  S  F  R  K  H  H  N  R  K  Y  Y  *  Q  G  R  *  K  R  C  F  V  C  C  V  L  *  I  C  D  M  F  S  *  L  M  E  V  *  Y  G  V  C  I  E  *  N  *  L  L  C  V  G  C  F  *  M  V  I  W  C  N  T  Y  D  Q  T  S  L  *  Y  R  L  F  V  Q  I  K  K  K  S  *  Y  C  I  E  N  M  *  *  N  I  R  L  K  V  G  S  K  K  L  Y  C  Y  N  E  I  Y  I  Y  N  K  S  K  S  R  I  A  D  V  A  M  P  L  R  A  E  F  F  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0113N10.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="11552" stop="11371"/>
                    <exon start="10985" stop="10733"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>432</number_coding_nucleotides>
                  <number_encoded_amino_acids>144</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FTYYYCLIAIFKHLLFQNCICMATNLQKRGLVSLGKRFVNQITYSTSRNSANSSSTALSGRNVVHTSVYDKNIEEYVSSWVPDEIIEVESDKYKYWTPHPQTGVFGPATDHIIKYGSQFSTVDSVLEQKTFFRDFEDLEKPSYP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="11629" e_stop="11589"/>
            <exon e_start="11501" e_stop="11371"/>
            <exon e_start="10985" e_stop="10346"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.900" acc_prob="0.964" e_score="1.000"/>
          <exon-intron don_prob="0.848" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="11629" e_stop="11589" e_length="41"/>
          </exon>
          <intron i_serial="1" don_prob="0.900" acc_prob="0.964">
            <gDNA_intron_boundary i_start="11588" i_stop="11502" i_length="87"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="11501" e_stop="11371" e_length="131"/>
          </exon>
          <intron i_serial="2" don_prob="0.848" acc_prob="1.000">
            <gDNA_intron_boundary i_start="11370" i_stop="10986" i_length="385"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="10985" e_stop="10346" e_length="640"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11629" stop="11589"/>
              <exon start="11501" stop="11371"/>
              <exon start="10985" stop="10771"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244271" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11608" stop="11589"/>
              <exon start="11501" stop="11371"/>
              <exon start="10985" stop="10430"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716094" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11608" stop="11589"/>
              <exon start="11501" stop="11371"/>
              <exon start="10985" stop="10433"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713572" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11600" stop="11589"/>
              <exon start="11501" stop="11371"/>
              <exon start="10985" stop="10389"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716847" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11596" stop="11589"/>
              <exon start="11501" stop="11371"/>
              <exon start="10985" stop="10543"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276153" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11489" stop="11371"/>
              <exon start="10985" stop="10587"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723674" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11400" stop="11371"/>
              <exon start="10985" stop="10764"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246754" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10718" stop="10346"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392315" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10639" stop="10357"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392631" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGTTTTCACTATTATAAATAAGAGAAACAGATCGCTATAAC : AATTGCATTTGCATGGCCACTAATTTACAGAAACGTGGACTGGTAAGCTTGGGGAAACGATTTGTGAACCAGATAACTTATTCAACTTCTCGAAATTCTGCCAACTCATCATCTACTGCGCTCTCTGGCAG : GAATGTGGTGCACACGTCAGTGTATGACAAGAATATAGAGGAATATGTGTCATCGTGGGTACCTGATGAAATAATCGAGGTAGAATCGGACAAATACAAGTACTGGACTCCTCATCCCCAAACAGGGGTGTTTGGGCCAGCTACTGATCACATTATAAAATATGGTTCTCAATTCTCCACGGTAGATTCTGTGTTGGAACAAAAGACATTTTTTCGTGATTTCGAGGATCTGGAGAAGCCTAGTTATCCTTAAGTTTCAGAAAACATCACAACAGAAAATACTACTAGCAGGGAAGGTGAAAGAGGTGTTTCGTTTGTTGTGTTCTATGAATATGTGATATGTTTAGTTAATTAATGGAAGTATAATATGGAGTATGTATAGAATAAAACTAGCTACTCTGTGTGGGCTGCTTTTAAATGGTCATATGGTGCAATACATACGATCAAACTTCTCTGTAATATCGTTTGTTTGTCCAAATTAAAAAAAAAAGTTAGTATTGTATAGAGAATATGTAATAGAACATAAGATTAAAAGTTGGTTCCAAGAAGCTATATTGTTACAATGAAATCTATATATATAATAAATCTAAATCAAGAATTGCTGATGTGGCAATGCCTCTAAGGGCTGAATTTTTTATTT</gDNA_template>
            <first_frame> C  F  H  Y  Y  K  *  E  K  Q  I  A  I  T :   I  A  F  A  W  P  L  I  Y  R  N  V  D  W  *  A  W  G  N  D  L  *  T  R  *  L  I  Q  L  L  E  I  L  P  T  H  H  L  L  R  S  L  A   : G  M  W  C  T  R  Q  C  M  T  R  I  *  R  N  M  C  H  R  G  Y  L  M  K  *  S  R  *  N  R  T  N  T  S  T  G  L  L  I  P  K  Q  G  C  L  G  Q  L  L  I  T  L  *  N  M  V  L  N  S  P  R  *  I  L  C  W  N  K  R  H  F  F  V  I  S  R  I  W  R  S  L  V  I  L  K  F  Q  K  T  S  Q  Q  K  I  L  L  A  G  K  V  K  E  V  F  R  L  L  C  S  M  N  M  *  Y  V  *  L  I  N  G  S  I  I  W  S  M  Y  R  I  K  L  A  T  L  C  G  L  L  L  N  G  H  M  V  Q  Y  I  R  S  N  F  S  V  I  S  F  V  C  P  N  *  K  K  K  L  V  L  Y  R  E  Y  V  I  E  H  K  I  K  S  W  F  Q  E  A  I  L  L  Q  *  N  L  Y  I  *  *  I  *  I  K  N  C  *  C  G  N  A  S  K  G  *  I  F  Y   </first_frame>
            <second_frame>  V  F  T  I  I  N  K  R  N  R  S  L  *   : Q  L  H  L  H  G  H  *  F  T  E  T  W  T  G  K  L  G  E  T  I  C  E  P  D  N  L  F  N  F  S  K  F  C  Q  L  I  I  Y  C  A  L  W  Q  :  E  C  G  A  H  V  S  V  *  Q  E  Y  R  G  I  C  V  I  V  G  T  *  *  N  N  R  G  R  I  G  Q  I  Q  V  L  D  S  S  S  P  N  R  G  V  W  A  S  Y  *  S  H  Y  K  I  W  F  S  I  L  H  G  R  F  C  V  G  T  K  D  I  F  S  *  F  R  G  S  G  E  A  *  L  S  L  S  F  R  K  H  H  N  R  K  Y  Y  *  Q  G  R  *  K  R  C  F  V  C  C  V  L  *  I  C  D  M  F  S  *  L  M  E  V  *  Y  G  V  C  I  E  *  N  *  L  L  C  V  G  C  F  *  M  V  I  W  C  N  T  Y  D  Q  T  S  L  *  Y  R  L  F  V  Q  I  K  K  K  S  *  Y  C  I  E  N  M  *  *  N  I  R  L  K  V  G  S  K  K  L  Y  C  Y  N  E  I  Y  I  Y  N  K  S  K  S  R  I  A  D  V  A  M  P  L  R  A  E  F  F  I  </second_frame>
            <third_frame>   F  S  L  L  *  I  R  E  T  D  R  Y  N  :  N  C  I  C  M  A  T  N  L  Q  K  R  G  L  V  S  L  G  K  R  F  V  N  Q  I  T  Y  S  T  S  R  N  S  A  N  S  S  S  T  A  L  S  G  R :   N  V  V  H  T  S  V  Y  D  K  N  I  E  E  Y  V  S  S  W  V  P  D  E  I  I  E  V  E  S  D  K  Y  K  Y  W  T  P  H  P  Q  T  G  V  F  G  P  A  T  D  H  I  I  K  Y  G  S  Q  F  S  T  V  D  S  V  L  E  Q  K  T  F  F  R  D  F  E  D  L  E  K  P  S  Y  P  *  V  S  E  N  I  T  T  E  N  T  T  S  R  E  G  E  R  G  V  S  F  V  V  F  Y  E  Y  V  I  C  L  V  N  *  W  K  Y  N  M  E  Y  V  *  N  K  T  S  Y  S  V  W  A  A  F  K  W  S  Y  G  A  I  H  T  I  K  L  L  C  N  I  V  C  L  S  K  L  K  K  K  V  S  I  V  *  R  I  C  N  R  T  *  D  *  K  L  V  P  R  S  Y  I  V  T  M  K  S  I  Y  I  I  N  L  N  Q  E  L  L  M  W  Q  C  L  *  G  L  N  F  L  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0113N10.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="11612" stop="11589"/>
                    <exon start="11501" stop="11371"/>
                    <exon start="10985" stop="10733"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>405</number_coding_nucleotides>
                  <number_encoded_amino_acids>135</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IRETDRYNNCICMATNLQKRGLVSLGKRFVNQITYSTSRNSANSSSTALSGRNVVHTSVYDKNIEEYVSSWVPDEIIEVESDKYKYWTPHPQTGVFGPATDHIIKYGSQFSTVDSVLEQKTFFRDFEDLEKPSYP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="11486" e_stop="10346"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.990">
            <gDNA_exon_boundary e_start="11486" e_stop="10346" e_length="1141"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11486" stop="10930"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254110" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11484" stop="10807"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262187" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11483" stop="10990"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262182" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10992" stop="10346"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395080" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10718" stop="10346"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392315" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10639" stop="10357"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392631" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCCACTAATTTACAGAAACGTGGACTGGTAAGCTTGGGGAAACGATTTGTGAACCAGATAACTTATTCAACTTCTCGAAATTCTGCCAACTCATCATCTACTGCGCTCTCTGGCAGGTATACTCTGAACCAGCAGTGGCTCAAGCATATTAGTGGCCTAAAACAAAAATAAAACAAGCTTTAAATTTGAATTGTTAATAACTTTAATATAGTTGATTTCTTTTAGTTTTTAATTAATAATATAACCATTCTTATTTTTCATGAGATATAATACTCCAAATATGTCATATTTCTTCTAATCTGAATTCTGAATTCTTATAAACATCAACTTGTACTATTATGGATTAATACTTATTTATACGTATAAAATAAAATTTTGATTATGGTTACTAAGTTCTACCTTACCCGAACCTGTAACTTTCTCTCTAGCTCTGTCCTTGATCAGTTCGAGTTAATTACTTTCAATTTGTTTTTTTTTTAAATCTAATTATGTTATGTGCAGGAATGTGGTGCACACGTCAGTGTATGACAAGAATATAGAGGAATATGTGTCATCGTGGGTACCTGATGAAATAATCGAGGTAGAATCGGACAAATACAAGTACTGGACTCCTCATCCCCAAACAGGGGTGTTTGGGCCAGCTACTGATCACATTATAAAATATGGTTCTCAATTCTCCACGGTAGATTCTGTGTTGGAACAAAAGACATTTTTTCGTGATTTCGAGGATCTGGAGAAGCCTAGTTATCCTTAAGTTTCAGAAAACATCACAACAGAAAATACTACTAGCAGGGAAGGTGAAAGAGGTGTTTCGTTTGTTGTGTTCTATGAATATGTGATATGTTTAGTTAATTAATGGAAGTATAATATGGAGTATGTATAGAATAAAACTAGCTACTCTGTGTGGGCTGCTTTTAAATGGTCATATGGTGCAATACATACGATCAAACTTCTCTGTAATATCGTTTGTTTGTCCAAATTAAAAAAAAAAGTTAGTATTGTATAGAGAATATGTAATAGAACATAAGATTAAAAGTTGGTTCCAAGAAGCTATATTGTTACAATGAAATCTATATATATAATAAATCTAAATCAAGAATTGCTGATGTGGCAATGCCTCTAAGGGCTGAATTTTTTATTT</gDNA_template>
            <first_frame> A  T  N  L  Q  K  R  G  L  V  S  L  G  K  R  F  V  N  Q  I  T  Y  S  T  S  R  N  S  A  N  S  S  S  T  A  L  S  G  R  Y  T  L  N  Q  Q  W  L  K  H  I  S  G  L  K  Q  K  *  N  K  L  *  I  *  I  V  N  N  F  N  I  V  D  F  F  *  F  L  I  N  N  I  T  I  L  I  F  H  E  I  *  Y  S  K  Y  V  I  F  L  L  I  *  I  L  N  S  Y  K  H  Q  L  V  L  L  W  I  N  T  Y  L  Y  V  *  N  K  I  L  I  M  V  T  K  F  Y  L  T  R  T  C  N  F  L  S  S  S  V  L  D  Q  F  E  L  I  T  F  N  L  F  F  F  *  I  *  L  C  Y  V  Q  E  C  G  A  H  V  S  V  *  Q  E  Y  R  G  I  C  V  I  V  G  T  *  *  N  N  R  G  R  I  G  Q  I  Q  V  L  D  S  S  S  P  N  R  G  V  W  A  S  Y  *  S  H  Y  K  I  W  F  S  I  L  H  G  R  F  C  V  G  T  K  D  I  F  S  *  F  R  G  S  G  E  A  *  L  S  L  S  F  R  K  H  H  N  R  K  Y  Y  *  Q  G  R  *  K  R  C  F  V  C  C  V  L  *  I  C  D  M  F  S  *  L  M  E  V  *  Y  G  V  C  I  E  *  N  *  L  L  C  V  G  C  F  *  M  V  I  W  C  N  T  Y  D  Q  T  S  L  *  Y  R  L  F  V  Q  I  K  K  K  S  *  Y  C  I  E  N  M  *  *  N  I  R  L  K  V  G  S  K  K  L  Y  C  Y  N  E  I  Y  I  Y  N  K  S  K  S  R  I  A  D  V  A  M  P  L  R  A  E  F  F  I  </first_frame>
            <second_frame>  P  L  I  Y  R  N  V  D  W  *  A  W  G  N  D  L  *  T  R  *  L  I  Q  L  L  E  I  L  P  T  H  H  L  L  R  S  L  A  G  I  L  *  T  S  S  G  S  S  I  L  V  A  *  N  K  N  K  T  S  F  K  F  E  L  L  I  T  L  I  *  L  I  S  F  S  F  *  L  I  I  *  P  F  L  F  F  M  R  Y  N  T  P  N  M  S  Y  F  F  *  S  E  F  *  I  L  I  N  I  N  L  Y  Y  Y  G  L  I  L  I  Y  T  Y  K  I  K  F  *  L  W  L  L  S  S  T  L  P  E  P  V  T  F  S  L  A  L  S  L  I  S  S  S  *  L  L  S  I  C  F  F  F  K  S  N  Y  V  M  C  R  N  V  V  H  T  S  V  Y  D  K  N  I  E  E  Y  V  S  S  W  V  P  D  E  I  I  E  V  E  S  D  K  Y  K  Y  W  T  P  H  P  Q  T  G  V  F  G  P  A  T  D  H  I  I  K  Y  G  S  Q  F  S  T  V  D  S  V  L  E  Q  K  T  F  F  R  D  F  E  D  L  E  K  P  S  Y  P  *  V  S  E  N  I  T  T  E  N  T  T  S  R  E  G  E  R  G  V  S  F  V  V  F  Y  E  Y  V  I  C  L  V  N  *  W  K  Y  N  M  E  Y  V  *  N  K  T  S  Y  S  V  W  A  A  F  K  W  S  Y  G  A  I  H  T  I  K  L  L  C  N  I  V  C  L  S  K  L  K  K  K  V  S  I  V  *  R  I  C  N  R  T  *  D  *  K  L  V  P  R  S  Y  I  V  T  M  K  S  I  Y  I  I  N  L  N  Q  E  L  L  M  W  Q  C  L  *  G  L  N  F  L  F </second_frame>
            <third_frame>   H  *  F  T  E  T  W  T  G  K  L  G  E  T  I  C  E  P  D  N  L  F  N  F  S  K  F  C  Q  L  I  I  Y  C  A  L  W  Q  V  Y  S  E  P  A  V  A  Q  A  Y  *  W  P  K  T  K  I  K  Q  A  L  N  L  N  C  *  *  L  *  Y  S  *  F  L  L  V  F  N  *  *  Y  N  H  S  Y  F  S  *  D  I  I  L  Q  I  C  H  I  S  S  N  L  N  S  E  F  L  *  T  S  T  C  T  I  M  D  *  Y  L  F  I  R  I  K  *  N  F  D  Y  G  Y  *  V  L  P  Y  P  N  L  *  L  S  L  *  L  C  P  *  S  V  R  V  N  Y  F  Q  F  V  F  F  L  N  L  I  M  L  C  A  G  M  W  C  T  R  Q  C  M  T  R  I  *  R  N  M  C  H  R  G  Y  L  M  K  *  S  R  *  N  R  T  N  T  S  T  G  L  L  I  P  K  Q  G  C  L  G  Q  L  L  I  T  L  *  N  M  V  L  N  S  P  R  *  I  L  C  W  N  K  R  H  F  F  V  I  S  R  I  W  R  S  L  V  I  L  K  F  Q  K  T  S  Q  Q  K  I  L  L  A  G  K  V  K  E  V  F  R  L  L  C  S  M  N  M  *  Y  V  *  L  I  N  G  S  I  I  W  S  M  Y  R  I  K  L  A  T  L  C  G  L  L  L  N  G  H  M  V  Q  Y  I  R  S  N  F  S  V  I  S  F  V  C  P  N  *  K  K  K  L  V  L  Y  R  E  Y  V  I  E  H  K  I  K  S  W  F  Q  E  A  I  L  L  Q  *  N  L  Y  I  *  *  I  *  I  K  N  C  *  C  G  N  A  S  K  G  *  I  F  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0113N10.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="11032" stop="10733"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>297</number_coding_nucleotides>
                  <number_encoded_amino_acids>99</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLSICFFFKSNYVMCRNVVHTSVYDKNIEEYVSSWVPDEIIEVESDKYKYWTPHPQTGVFGPATDHIIKYGSQFSTVDSVLEQKTFFRDFEDLEKPSYP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="10426" PGL_stop="10918"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="10426" e_stop="10918"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="10426" e_stop="10918" e_length="493"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10426" stop="10918"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260006" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10493" stop="10918"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257063" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAACAATATAGCTTCTTGGAACCAACTTTTAATCTTATGTTCTATTACATATTCTCTATACAATACTAACTTTTTTTTTTAATTTGGACAAACAAACGATATTACAGAGAAGTTTGATCGTATGTATTGCACCATATGACCATTTAAAAGCAGCCCACACAGAGTAGCTAGTTTTATTCTATACATACTCCATATTATACTTCCATTAATTAACTAAACATATCACATATTCATAGAACACAACAAACGAAACACCTCTTTCACCTTCCCTGCTAGTAGTATTTTCTGTTGTGATGTTTTCTGAAACTTAAGGATAACTAGGCTTCTCCAGATCCTCGAAATCACGAAAAAATGTCTTTTGTTCCAACACAGAATCTACCGTGGAGAATTGAGAACCATATTTTATAATGTGATCAGTAGCTGGCCCAAACACCCCTGTTTGGGGATGAGGAGTCCAGTACTTGTATTTGTCCGATTCTACCTCGATTATTTC</gDNA_template>
            <first_frame> *  Q  Y  S  F  L  E  P  T  F  N  L  M  F  Y  Y  I  F  S  I  Q  Y  *  L  F  F  L  I  W  T  N  K  R  Y  Y  R  E  V  *  S  Y  V  L  H  H  M  T  I  *  K  Q  P  T  Q  S  S  *  F  Y  S  I  H  T  P  Y  Y  T  S  I  N  *  L  N  I  S  H  I  H  R  T  Q  Q  T  K  H  L  F  H  L  P  C  *  *  Y  F  L  L  *  C  F  L  K  L  K  D  N  *  A  S  P  D  P  R  N  H  E  K  M  S  F  V  P  T  Q  N  L  P  W  R  I  E  N  H  I  L  *  C  D  Q  *  L  A  Q  T  P  L  F  G  D  E  E  S  S  T  C  I  C  P  I  L  P  R  L  F  </first_frame>
            <second_frame>  N  N  I  A  S  W  N  Q  L  L  I  L  C  S  I  T  Y  S  L  Y  N  T  N  F  F  F  *  F  G  Q  T  N  D  I  T  E  K  F  D  R  M  Y  C  T  I  *  P  F  K  S  S  P  H  R  V  A  S  F  I  L  Y  I  L  H  I  I  L  P  L  I  N  *  T  Y  H  I  F  I  E  H  N  K  R  N  T  S  F  T  F  P  A  S  S  I  F  C  C  D  V  F  *  N  L  R  I  T  R  L  L  Q  I  L  E  I  T  K  K  C  L  L  F  Q  H  R  I  Y  R  G  E  L  R  T  I  F  Y  N  V  I  S  S  W  P  K  H  P  C  L  G  M  R  S  P  V  L  V  F  V  R  F  Y  L  D  Y  F </second_frame>
            <third_frame>   T  I  *  L  L  G  T  N  F  *  S  Y  V  L  L  H  I  L  Y  T  I  L  T  F  F  F  N  L  D  K  Q  T  I  L  Q  R  S  L  I  V  C  I  A  P  Y  D  H  L  K  A  A  H  T  E  *  L  V  L  F  Y  T  Y  S  I  L  Y  F  H  *  L  T  K  H  I  T  Y  S  *  N  T  T  N  E  T  P  L  S  P  S  L  L  V  V  F  S  V  V  M  F  S  E  T  *  G  *  L  G  F  S  R  S  S  K  S  R  K  N  V  F  C  S  N  T  E  S  T  V  E  N  *  E  P  Y  F  I  M  *  S  V  A  G  P  N  T  P  V  W  G  *  G  V  Q  Y  L  Y  L  S  D  S  T  S  I  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06SLm0113N10.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="20899" PGL_stop="24586"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="20914" e_stop="21116"/>
            <exon e_start="21241" e_stop="21598"/>
            <exon e_start="21689" e_stop="21719"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.559" e_score="1.000"/>
          <exon-only e_score="0.750"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="20914" e_stop="21116" e_length="203"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="21117" i_stop="21240" i_length="124"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="21241" e_stop="21598" e_length="358"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.559">
            <gDNA_intron_boundary i_start="21599" i_stop="21688" i_length="90"/>
          </intron>
          <exon e_serial="3" e_score="0.750">
            <gDNA_exon_boundary e_start="21689" e_stop="21719" e_length="31"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20914" stop="21116"/>
              <exon start="21241" stop="21593"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717431" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20929" stop="21116"/>
              <exon start="21241" stop="21598"/>
              <exon start="21689" stop="21702"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715980" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20929" stop="21116"/>
              <exon start="21241" stop="21598"/>
              <exon start="21689" stop="21700"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712130" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20946" stop="21116"/>
              <exon start="21241" stop="21598"/>
              <exon start="21689" stop="21719"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721562" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20949" stop="21116"/>
              <exon start="21241" stop="21598"/>
              <exon start="21689" stop="21696"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714447" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20951" stop="21116"/>
              <exon start="21241" stop="21598"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714309" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21093" stop="21116"/>
              <exon start="21241" stop="21598"/>
              <exon start="21689" stop="21704"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225607" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATCATTACATTGAGCATTTCATCTAATTCTTCTTACTCATTTGCTTTATTGTGTTGAAAAGTAGTAATTAAGAACTTTAATCCCTTTTTTTTCAAACTAGTAATCCATATTTGAATGGCCACCAGTTTACAGAACCGTGGATTCGTTAGCTTGAAGAAGGGATTTTTGAACTATATTAATCAAAGTTTTGGCTCGGATCTTGT : GAGGGCAGTGCATGCATCAGTGTACGATAAGAATCTGGAGGAGTCTGTGCTGGTGCCAGATGAAGTGATCAAGGCGAAATCGGATAAGTACTGGACTCCTCATCCTCATACTGGTGTGTTTGGACCAGCCACTGATCATCATATCGGTATCAGGGCTGTGACTGCTAGTGTAGATTCTGTGTTGGAACAGAAGGCCTTCTTCCGCCCACTCGAGGATCTTGAGAAGCCAGCTTATGTTTAAATTTCTTTCAATCTGTAGTGATTTTTTTAAAAAATTTGAATCTGTAGTAAAGAGTGCAGAATAAGATGCTATCAAATATTTGTATTATAAATAATATGAATCTTTTACTTCTATCAA : AAAGAAACTCAATAGATTTAAGAACTTCAGA</gDNA_template>
            <first_frame> I  I  T  L  S  I  S  S  N  S  S  Y  S  F  A  L  L  C  *  K  V  V  I  K  N  F  N  P  F  F  F  K  L  V  I  H  I  *  M  A  T  S  L  Q  N  R  G  F  V  S  L  K  K  G  F  L  N  Y  I  N  Q  S  F  G  S  D  L  V :   R  A  V  H  A  S  V  Y  D  K  N  L  E  E  S  V  L  V  P  D  E  V  I  K  A  K  S  D  K  Y  W  T  P  H  P  H  T  G  V  F  G  P  A  T  D  H  H  I  G  I  R  A  V  T  A  S  V  D  S  V  L  E  Q  K  A  F  F  R  P  L  E  D  L  E  K  P  A  Y  V  *  I  S  F  N  L  *  *  F  F  *  K  I  *  I  C  S  K  E  C  R  I  R  C  Y  Q  I  F  V  L  *  I  I  *  I  F  Y  F  Y  Q  :  K  E  T  Q  *  I  *  E  L  Q  </first_frame>
            <second_frame>  S  L  H  *  A  F  H  L  I  L  L  T  H  L  L  Y  C  V  E  K  *  *  L  R  T  L  I  P  F  F  S  N  *  *  S  I  F  E  W  P  P  V  Y  R  T  V  D  S  L  A  *  R  R  D  F  *  T  I  L  I  K  V  L  A  R  I  L   : *  G  Q  C  M  H  Q  C  T  I  R  I  W  R  S  L  C  W  C  Q  M  K  *  S  R  R  N  R  I  S  T  G  L  L  I  L  I  L  V  C  L  D  Q  P  L  I  I  I  S  V  S  G  L  *  L  L  V  *  I  L  C  W  N  R  R  P  S  S  A  H  S  R  I  L  R  S  Q  L  M  F  K  F  L  S  I  C  S  D  F  F  K  K  F  E  S  V  V  K  S  A  E  *  D  A  I  K  Y  L  Y  Y  K  *  Y  E  S  F  T  S  I  K :   K  K  L  N  R  F  K  N  F  R </second_frame>
            <third_frame>   H  Y  I  E  H  F  I  *  F  F  L  L  I  C  F  I  V  L  K  S  S  N  *  E  L  *  S  L  F  F  Q  T  S  N  P  Y  L  N  G  H  Q  F  T  E  P  W  I  R  *  L  E  E  G  I  F  E  L  Y  *  S  K  F  W  L  G  S  C  :  E  G  S  A  C  I  S  V  R  *  E  S  G  G  V  C  A  G  A  R  *  S  D  Q  G  E  I  G  *  V  L  D  S  S  S  S  Y  W  C  V  W  T  S  H  *  S  S  Y  R  Y  Q  G  C  D  C  *  C  R  F  C  V  G  T  E  G  L  L  P  P  T  R  G  S  *  E  A  S  L  C  L  N  F  F  Q  S  V  V  I  F  L  K  N  L  N  L  *  *  R  V  Q  N  K  M  L  S  N  I  C  I  I  N  N  M  N  L  L  L  L  S   : K  R  N  S  I  D  L  R  T  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0113N10.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="21028" stop="21116"/>
                    <exon start="21241" stop="21481"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>327</number_coding_nucleotides>
                  <number_encoded_amino_acids>109</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MATSLQNRGFVSLKKGFLNYINQSFGSDLVRAVHASVYDKNLEESVLVPDEVIKAKSDKYWTPHPHTGVFGPATDHHIGIRAVTASVDSVLEQKAFFRPLEDLEKPAYV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="20913" e_stop="21116"/>
            <exon e_start="21241" e_stop="21598"/>
            <exon e_start="24538" e_stop="24586"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.732"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="20913" e_stop="21116" e_length="204"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="21117" i_stop="21240" i_length="124"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="21241" e_stop="21598" e_length="358"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="21599" i_stop="24537" i_length="2939"/>
          </intron>
          <exon e_serial="3" e_score="0.732">
            <gDNA_exon_boundary e_start="24538" e_stop="24586" e_length="49"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20913" stop="21116"/>
              <exon start="21241" stop="21598"/>
              <exon start="24538" stop="24586"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723482" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20914" stop="21116"/>
              <exon start="21241" stop="21598"/>
              <exon start="24538" stop="24582"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722210" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20914" stop="21116"/>
              <exon start="21241" stop="21593"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717431" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20928" stop="21116"/>
              <exon start="21241" stop="21598"/>
              <exon start="24538" stop="24578"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718561" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20951" stop="21116"/>
              <exon start="21241" stop="21598"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714309" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CATCATTACATTGAGCATTTCATCTAATTCTTCTTACTCATTTGCTTTATTGTGTTGAAAAGTAGTAATTAAGAACTTTAATCCCTTTTTTTTCAAACTAGTAATCCATATTTGAATGGCCACCAGTTTACAGAACCGTGGATTCGTTAGCTTGAAGAAGGGATTTTTGAACTATATTAATCAAAGTTTTGGCTCGGATCTTGT : GAGGGCAGTGCATGCATCAGTGTACGATAAGAATCTGGAGGAGTCTGTGCTGGTGCCAGATGAAGTGATCAAGGCGAAATCGGATAAGTACTGGACTCCTCATCCTCATACTGGTGTGTTTGGACCAGCCACTGATCATCATATCGGTATCAGGGCTGTGACTGCTAGTGTAGATTCTGTGTTGGAACAGAAGGCCTTCTTCCGCCCACTCGAGGATCTTGAGAAGCCAGCTTATGTTTAAATTTCTTTCAATCTGTAGTGATTTTTTTAAAAAATTTGAATCTGTAGTAAAGAGTGCAGAATAAGATGCTATCAAATATTTGTATTATAAATAATATGAATCTTTTACTTCTATCAA : AAAAAAAAAAGATACAAAACCAGAGATCACAATAAAAAAAACGAAACAA</gDNA_template>
            <first_frame> H  H  Y  I  E  H  F  I  *  F  F  L  L  I  C  F  I  V  L  K  S  S  N  *  E  L  *  S  L  F  F  Q  T  S  N  P  Y  L  N  G  H  Q  F  T  E  P  W  I  R  *  L  E  E  G  I  F  E  L  Y  *  S  K  F  W  L  G  S  C  :  E  G  S  A  C  I  S  V  R  *  E  S  G  G  V  C  A  G  A  R  *  S  D  Q  G  E  I  G  *  V  L  D  S  S  S  S  Y  W  C  V  W  T  S  H  *  S  S  Y  R  Y  Q  G  C  D  C  *  C  R  F  C  V  G  T  E  G  L  L  P  P  T  R  G  S  *  E  A  S  L  C  L  N  F  F  Q  S  V  V  I  F  L  K  N  L  N  L  *  *  R  V  Q  N  K  M  L  S  N  I  C  I  I  N  N  M  N  L  L  L  L  S   : K  K  K  K  I  Q  N  Q  R  S  Q  *  K  K  R  N   </first_frame>
            <second_frame>  I  I  T  L  S  I  S  S  N  S  S  Y  S  F  A  L  L  C  *  K  V  V  I  K  N  F  N  P  F  F  F  K  L  V  I  H  I  *  M  A  T  S  L  Q  N  R  G  F  V  S  L  K  K  G  F  L  N  Y  I  N  Q  S  F  G  S  D  L  V :   R  A  V  H  A  S  V  Y  D  K  N  L  E  E  S  V  L  V  P  D  E  V  I  K  A  K  S  D  K  Y  W  T  P  H  P  H  T  G  V  F  G  P  A  T  D  H  H  I  G  I  R  A  V  T  A  S  V  D  S  V  L  E  Q  K  A  F  F  R  P  L  E  D  L  E  K  P  A  Y  V  *  I  S  F  N  L  *  *  F  F  *  K  I  *  I  C  S  K  E  C  R  I  R  C  Y  Q  I  F  V  L  *  I  I  *  I  F  Y  F  Y  Q  :  K  K  K  R  Y  K  T  R  D  H  N  K  K  N  E  T  </second_frame>
            <third_frame>   S  L  H  *  A  F  H  L  I  L  L  T  H  L  L  Y  C  V  E  K  *  *  L  R  T  L  I  P  F  F  S  N  *  *  S  I  F  E  W  P  P  V  Y  R  T  V  D  S  L  A  *  R  R  D  F  *  T  I  L  I  K  V  L  A  R  I  L   : *  G  Q  C  M  H  Q  C  T  I  R  I  W  R  S  L  C  W  C  Q  M  K  *  S  R  R  N  R  I  S  T  G  L  L  I  L  I  L  V  C  L  D  Q  P  L  I  I  I  S  V  S  G  L  *  L  L  V  *  I  L  C  W  N  R  R  P  S  S  A  H  S  R  I  L  R  S  Q  L  M  F  K  F  L  S  I  C  S  D  F  F  K  K  F  E  S  V  V  K  S  A  E  *  D  A  I  K  Y  L  Y  Y  K  *  Y  E  S  F  T  S  I  K :   K  K  K  D  T  K  P  E  I  T  I  K  K  T  K  Q </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0113N10.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="21028" stop="21116"/>
                    <exon start="21241" stop="21481"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>327</number_coding_nucleotides>
                  <number_encoded_amino_acids>109</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MATSLQNRGFVSLKKGFLNYINQSFGSDLVRAVHASVYDKNLEESVLVPDEVIKAKSDKYWTPHPHTGVFGPATDHHIGIRAVTASVDSVLEQKAFFRPLEDLEKPAYV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="20899" e_stop="21116"/>
            <exon e_start="21241" e_stop="21651"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="1.000" e_score="0.995"/>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="20899" e_stop="21116" e_length="218"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="21117" i_stop="21240" i_length="124"/>
          </intron>
          <exon e_serial="2" e_score="0.993">
            <gDNA_exon_boundary e_start="21241" e_stop="21651" e_length="411"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20899" stop="21116"/>
              <exon start="21241" stop="21651"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718517" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20914" stop="21116"/>
              <exon start="21241" stop="21593"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717431" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20936" stop="21116"/>
              <exon start="21241" stop="21603"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714482" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20943" stop="21116"/>
              <exon start="21241" stop="21603"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346928" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20951" stop="21116"/>
              <exon start="21241" stop="21598"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714309" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CGGAGACTCAAAATCATCATTACATTGAGCATTTCATCTAATTCTTCTTACTCATTTGCTTTATTGTGTTGAAAAGTAGTAATTAAGAACTTTAATCCCTTTTTTTTCAAACTAGTAATCCATATTTGAATGGCCACCAGTTTACAGAACCGTGGATTCGTTAGCTTGAAGAAGGGATTTTTGAACTATATTAATCAAAGTTTTGGCTCGGATCTTGT : GAGGGCAGTGCATGCATCAGTGTACGATAAGAATCTGGAGGAGTCTGTGCTGGTGCCAGATGAAGTGATCAAGGCGAAATCGGATAAGTACTGGACTCCTCATCCTCATACTGGTGTGTTTGGACCAGCCACTGATCATCATATCGGTATCAGGGCTGTGACTGCTAGTGTAGATTCTGTGTTGGAACAGAAGGCCTTCTTCCGCCCACTCGAGGATCTTGAGAAGCCAGCTTATGTTTAAATTTCTTTCAATCTGTAGTGATTTTTTTAAAAAATTTGAATCTGTAGTAAAGAGTGCAGAATAAGATGCTATCAAATATTTGTATTATAAATAATATGAATCTTTTACTTCTATCAAGTTCGCTCTGTGTTGGGGAAGAAAAGTTGTACCATCCAAATCCTCCCAAAGAA</gDNA_template>
            <first_frame> R  R  L  K  I  I  I  T  L  S  I  S  S  N  S  S  Y  S  F  A  L  L  C  *  K  V  V  I  K  N  F  N  P  F  F  F  K  L  V  I  H  I  *  M  A  T  S  L  Q  N  R  G  F  V  S  L  K  K  G  F  L  N  Y  I  N  Q  S  F  G  S  D  L  V :   R  A  V  H  A  S  V  Y  D  K  N  L  E  E  S  V  L  V  P  D  E  V  I  K  A  K  S  D  K  Y  W  T  P  H  P  H  T  G  V  F  G  P  A  T  D  H  H  I  G  I  R  A  V  T  A  S  V  D  S  V  L  E  Q  K  A  F  F  R  P  L  E  D  L  E  K  P  A  Y  V  *  I  S  F  N  L  *  *  F  F  *  K  I  *  I  C  S  K  E  C  R  I  R  C  Y  Q  I  F  V  L  *  I  I  *  I  F  Y  F  Y  Q  V  R  S  V  L  G  K  K  S  C  T  I  Q  I  L  P  K   </first_frame>
            <second_frame>  G  D  S  K  S  S  L  H  *  A  F  H  L  I  L  L  T  H  L  L  Y  C  V  E  K  *  *  L  R  T  L  I  P  F  F  S  N  *  *  S  I  F  E  W  P  P  V  Y  R  T  V  D  S  L  A  *  R  R  D  F  *  T  I  L  I  K  V  L  A  R  I  L   : *  G  Q  C  M  H  Q  C  T  I  R  I  W  R  S  L  C  W  C  Q  M  K  *  S  R  R  N  R  I  S  T  G  L  L  I  L  I  L  V  C  L  D  Q  P  L  I  I  I  S  V  S  G  L  *  L  L  V  *  I  L  C  W  N  R  R  P  S  S  A  H  S  R  I  L  R  S  Q  L  M  F  K  F  L  S  I  C  S  D  F  F  K  K  F  E  S  V  V  K  S  A  E  *  D  A  I  K  Y  L  Y  Y  K  *  Y  E  S  F  T  S  I  K  F  A  L  C  W  G  R  K  V  V  P  S  K  S  S  Q  R  </second_frame>
            <third_frame>   E  T  Q  N  H  H  Y  I  E  H  F  I  *  F  F  L  L  I  C  F  I  V  L  K  S  S  N  *  E  L  *  S  L  F  F  Q  T  S  N  P  Y  L  N  G  H  Q  F  T  E  P  W  I  R  *  L  E  E  G  I  F  E  L  Y  *  S  K  F  W  L  G  S  C  :  E  G  S  A  C  I  S  V  R  *  E  S  G  G  V  C  A  G  A  R  *  S  D  Q  G  E  I  G  *  V  L  D  S  S  S  S  Y  W  C  V  W  T  S  H  *  S  S  Y  R  Y  Q  G  C  D  C  *  C  R  F  C  V  G  T  E  G  L  L  P  P  T  R  G  S  *  E  A  S  L  C  L  N  F  F  Q  S  V  V  I  F  L  K  N  L  N  L  *  *  R  V  Q  N  K  M  L  S  N  I  C  I  I  N  N  M  N  L  L  L  L  S  S  S  L  C  V  G  E  E  K  L  Y  H  P  N  P  P  K  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0113N10.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="21028" stop="21116"/>
                    <exon start="21241" stop="21481"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>327</number_coding_nucleotides>
                  <number_encoded_amino_acids>109</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MATSLQNRGFVSLKKGFLNYINQSFGSDLVRAVHASVYDKNLEESVLVPDEVIKAKSDKYWTPHPHTGVFGPATDHHIGIRAVTASVDSVLEQKAFFRPLEDLEKPAYV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="20914" e_stop="21116"/>
            <exon e_start="21241" e_stop="21598"/>
            <exon e_start="21800" e_stop="21857"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="1.000" e_score="0.995"/>
          <exon-intron don_prob="0.000" acc_prob="0.872" e_score="1.000"/>
          <exon-only e_score="0.431"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="20914" e_stop="21116" e_length="203"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="21117" i_stop="21240" i_length="124"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="21241" e_stop="21598" e_length="358"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.872">
            <gDNA_intron_boundary i_start="21599" i_stop="21799" i_length="201"/>
          </intron>
          <exon e_serial="3" e_score="0.431">
            <gDNA_exon_boundary e_start="21800" e_stop="21857" e_length="58"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20914" stop="21116"/>
              <exon start="21241" stop="21593"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717431" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20945" stop="21116"/>
              <exon start="21241" stop="21598"/>
              <exon start="21800" stop="21857"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712179" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20951" stop="21116"/>
              <exon start="21241" stop="21598"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714309" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATCATTACATTGAGCATTTCATCTAATTCTTCTTACTCATTTGCTTTATTGTGTTGAAAAGTAGTAATTAAGAACTTTAATCCCTTTTTTTTCAAACTAGTAATCCATATTTGAATGGCCACCAGTTTACAGAACCGTGGATTCGTTAGCTTGAAGAAGGGATTTTTGAACTATATTAATCAAAGTTTTGGCTCGGATCTTGT : GAGGGCAGTGCATGCATCAGTGTACGATAAGAATCTGGAGGAGTCTGTGCTGGTGCCAGATGAAGTGATCAAGGCGAAATCGGATAAGTACTGGACTCCTCATCCTCATACTGGTGTGTTTGGACCAGCCACTGATCATCATATCGGTATCAGGGCTGTGACTGCTAGTGTAGATTCTGTGTTGGAACAGAAGGCCTTCTTCCGCCCACTCGAGGATCTTGAGAAGCCAGCTTATGTTTAAATTTCTTTCAATCTGTAGTGATTTTTTTAAAAAATTTGAATCTGTAGTAAAGAGTGCAGAATAAGATGCTATCAAATATTTGTATTATAAATAATATGAATCTTTTACTTCTATCAA : GTTGATAGAGTTGAAAAAGGAAAACACAATGGAACTGATGGAGGGACACATTTTTAAT</gDNA_template>
            <first_frame> I  I  T  L  S  I  S  S  N  S  S  Y  S  F  A  L  L  C  *  K  V  V  I  K  N  F  N  P  F  F  F  K  L  V  I  H  I  *  M  A  T  S  L  Q  N  R  G  F  V  S  L  K  K  G  F  L  N  Y  I  N  Q  S  F  G  S  D  L  V :   R  A  V  H  A  S  V  Y  D  K  N  L  E  E  S  V  L  V  P  D  E  V  I  K  A  K  S  D  K  Y  W  T  P  H  P  H  T  G  V  F  G  P  A  T  D  H  H  I  G  I  R  A  V  T  A  S  V  D  S  V  L  E  Q  K  A  F  F  R  P  L  E  D  L  E  K  P  A  Y  V  *  I  S  F  N  L  *  *  F  F  *  K  I  *  I  C  S  K  E  C  R  I  R  C  Y  Q  I  F  V  L  *  I  I  *  I  F  Y  F  Y  Q  :  V  D  R  V  E  K  G  K  H  N  G  T  D  G  G  T  H  F  *  </first_frame>
            <second_frame>  S  L  H  *  A  F  H  L  I  L  L  T  H  L  L  Y  C  V  E  K  *  *  L  R  T  L  I  P  F  F  S  N  *  *  S  I  F  E  W  P  P  V  Y  R  T  V  D  S  L  A  *  R  R  D  F  *  T  I  L  I  K  V  L  A  R  I  L   : *  G  Q  C  M  H  Q  C  T  I  R  I  W  R  S  L  C  W  C  Q  M  K  *  S  R  R  N  R  I  S  T  G  L  L  I  L  I  L  V  C  L  D  Q  P  L  I  I  I  S  V  S  G  L  *  L  L  V  *  I  L  C  W  N  R  R  P  S  S  A  H  S  R  I  L  R  S  Q  L  M  F  K  F  L  S  I  C  S  D  F  F  K  K  F  E  S  V  V  K  S  A  E  *  D  A  I  K  Y  L  Y  Y  K  *  Y  E  S  F  T  S  I  K :   L  I  E  L  K  K  E  N  T  M  E  L  M  E  G  H  I  F  N </second_frame>
            <third_frame>   H  Y  I  E  H  F  I  *  F  F  L  L  I  C  F  I  V  L  K  S  S  N  *  E  L  *  S  L  F  F  Q  T  S  N  P  Y  L  N  G  H  Q  F  T  E  P  W  I  R  *  L  E  E  G  I  F  E  L  Y  *  S  K  F  W  L  G  S  C  :  E  G  S  A  C  I  S  V  R  *  E  S  G  G  V  C  A  G  A  R  *  S  D  Q  G  E  I  G  *  V  L  D  S  S  S  S  Y  W  C  V  W  T  S  H  *  S  S  Y  R  Y  Q  G  C  D  C  *  C  R  F  C  V  G  T  E  G  L  L  P  P  T  R  G  S  *  E  A  S  L  C  L  N  F  F  Q  S  V  V  I  F  L  K  N  L  N  L  *  *  R  V  Q  N  K  M  L  S  N  I  C  I  I  N  N  M  N  L  L  L  L  S   : S  *  *  S  *  K  R  K  T  Q  W  N  *  W  R  D  T  F  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0113N10.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="21028" stop="21116"/>
                    <exon start="21241" stop="21481"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>327</number_coding_nucleotides>
                  <number_encoded_amino_acids>109</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MATSLQNRGFVSLKKGFLNYINQSFGSDLVRAVHASVYDKNLEESVLVPDEVIKAKSDKYWTPHPHTGVFGPATDHHIGIRAVTASVDSVLEQKAFFRPLEDLEKPAYV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="20911" e_stop="21665"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="20911" e_stop="21665" e_length="755"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20911" stop="21665"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722015" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20911" stop="21645"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721927" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="5" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATCATCATTACATTGAGCATTTCATCTAATTCTTCTTACTCATTTGCTTTATTGTGTTGAAAAGTAGTAATTAAGAACTTTAATCCCTTTTTTTTCAAACTAGTAATCCATATTTGAATGGCCACCAGTTTACAGAACCGTGGATTCGTTAGCTTGAAGAAGGGATTTTTGAACTATATTAATCAAAGTTTTGGCTCGGATCTTGTGTATGTATTAGAAAATCATTGAATAAGTAGTACTTCATTGATTTCGAACTCAGGAAATTGAATGGTTTGTGTCGTAAAGTTCAGATCCTTGATCCTTATTTATATGTGTGTGTTTTTTGTGCAGGAGGGCAGTGCATGCATCAGTGTACGATAAGAATCTGGAGGAGTCTGTGCTGGTGCCAGATGAAGTGATCAAGGCGAAATCGGATAAGTACTGGACTCCTCATCCTCATACTGGTGTGTTTGGACCAGCCACTGATCATCATATCGGTATCAGGGCTGTGACTGCTAGTGTAGATTCTGTGTTGGAACAGAAGGCCTTCTTCCGCCCACTCGAGGATCTTGAGAAGCCAGCTTATGTTTAAATTTCTTTCAATCTGTAGTGATTTTTTTAAAAAATTTGAATCTGTAGTAAAGAGTGCAGAATAAGATGCTATCAAATATTTGTATTATAAATAATATGAATCTTTTACTTCTATCAAGTTCGCTCTGTGTTGGGGAAGAAAAGTTGTACCATCCAAATCCTCCCAAAGAAATTACTCTTTCAAT</gDNA_template>
            <first_frame> I  I  I  T  L  S  I  S  S  N  S  S  Y  S  F  A  L  L  C  *  K  V  V  I  K  N  F  N  P  F  F  F  K  L  V  I  H  I  *  M  A  T  S  L  Q  N  R  G  F  V  S  L  K  K  G  F  L  N  Y  I  N  Q  S  F  G  S  D  L  V  Y  V  L  E  N  H  *  I  S  S  T  S  L  I  S  N  S  G  N  *  M  V  C  V  V  K  F  R  S  L  I  L  I  Y  M  C  V  F  F  V  Q  E  G  S  A  C  I  S  V  R  *  E  S  G  G  V  C  A  G  A  R  *  S  D  Q  G  E  I  G  *  V  L  D  S  S  S  S  Y  W  C  V  W  T  S  H  *  S  S  Y  R  Y  Q  G  C  D  C  *  C  R  F  C  V  G  T  E  G  L  L  P  P  T  R  G  S  *  E  A  S  L  C  L  N  F  F  Q  S  V  V  I  F  L  K  N  L  N  L  *  *  R  V  Q  N  K  M  L  S  N  I  C  I  I  N  N  M  N  L  L  L  L  S  S  S  L  C  V  G  E  E  K  L  Y  H  P  N  P  P  K  E  I  T  L  S   </first_frame>
            <second_frame>  S  S  L  H  *  A  F  H  L  I  L  L  T  H  L  L  Y  C  V  E  K  *  *  L  R  T  L  I  P  F  F  S  N  *  *  S  I  F  E  W  P  P  V  Y  R  T  V  D  S  L  A  *  R  R  D  F  *  T  I  L  I  K  V  L  A  R  I  L  C  M  Y  *  K  I  I  E  *  V  V  L  H  *  F  R  T  Q  E  I  E  W  F  V  S  *  S  S  D  P  *  S  L  F  I  C  V  C  F  L  C  R  R  A  V  H  A  S  V  Y  D  K  N  L  E  E  S  V  L  V  P  D  E  V  I  K  A  K  S  D  K  Y  W  T  P  H  P  H  T  G  V  F  G  P  A  T  D  H  H  I  G  I  R  A  V  T  A  S  V  D  S  V  L  E  Q  K  A  F  F  R  P  L  E  D  L  E  K  P  A  Y  V  *  I  S  F  N  L  *  *  F  F  *  K  I  *  I  C  S  K  E  C  R  I  R  C  Y  Q  I  F  V  L  *  I  I  *  I  F  Y  F  Y  Q  V  R  S  V  L  G  K  K  S  C  T  I  Q  I  L  P  K  K  L  L  F  Q  </second_frame>
            <third_frame>   H  H  Y  I  E  H  F  I  *  F  F  L  L  I  C  F  I  V  L  K  S  S  N  *  E  L  *  S  L  F  F  Q  T  S  N  P  Y  L  N  G  H  Q  F  T  E  P  W  I  R  *  L  E  E  G  I  F  E  L  Y  *  S  K  F  W  L  G  S  C  V  C  I  R  K  S  L  N  K  *  Y  F  I  D  F  E  L  R  K  L  N  G  L  C  R  K  V  Q  I  L  D  P  Y  L  Y  V  C  V  F  C  A  G  G  Q  C  M  H  Q  C  T  I  R  I  W  R  S  L  C  W  C  Q  M  K  *  S  R  R  N  R  I  S  T  G  L  L  I  L  I  L  V  C  L  D  Q  P  L  I  I  I  S  V  S  G  L  *  L  L  V  *  I  L  C  W  N  R  R  P  S  S  A  H  S  R  I  L  R  S  Q  L  M  F  K  F  L  S  I  C  S  D  F  F  K  K  F  E  S  V  V  K  S  A  E  *  D  A  I  K  Y  L  Y  Y  K  *  Y  E  S  F  T  S  I  K  F  A  L  C  W  G  R  K  V  V  P  S  K  S  S  Q  R  N  Y  S  F  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0113N10.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="21209" stop="21481"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>270</number_coding_nucleotides>
                  <number_encoded_amino_acids>90</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SLFICVCFLCRRAVHASVYDKNLEESVLVPDEVIKAKSDKYWTPHPHTGVFGPATDHHIGIRAVTASVDSVLEQKAFFRPLEDLEKPAYV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="21735" PGL_stop="21255"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="21735" e_stop="21714"/>
            <exon e_start="21596" e_stop="21255"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.745" acc_prob="0.000" e_score="0.455"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.455">
            <gDNA_exon_boundary e_start="21735" e_stop="21714" e_length="22"/>
          </exon>
          <intron i_serial="1" don_prob="0.745" acc_prob="0.000">
            <gDNA_intron_boundary i_start="21713" i_stop="21597" i_length="117"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="21596" e_stop="21255" e_length="342"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21735" stop="21714"/>
              <exon start="21596" stop="21255"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216397" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCCATTATTACATCTCTCTGAA : GATAGAAGTAAAAGATTCATATTATTTATAATACAAATATTTGATAGCATCTTATTCTGCACTCTTTACTACAGATTCAAATTTTTTAAAAAAATCACTACAGATTGAAAGAAATTTAAACATAAGCTGGCTTCTCAAGATCCTCGAGTGGGCGGAAGAAGGCCTTCTGTTCCAACACAGAATCTACACTAGCAGTCACAGCCCTGATACCGATATGATGATCAGTGGCTGGTCCAAACACACCAGTATGAGGATGAGGAGTCCAGTACTTATCCGATTTCGCCTTGATCACTTCATCTGGCACCAGCACAGACTCCTCCAGATTCTTATCGTACACTGATG</gDNA_template>
            <first_frame> S  I  I  T  S  L  *   : R  *  K  *  K  I  H  I  I  Y  N  T  N  I  *  *  H  L  I  L  H  S  L  L  Q  I  Q  I  F  *  K  N  H  Y  R  L  K  E  I  *  T  *  A  G  F  S  R  S  S  S  G  R  K  K  A  F  C  S  N  T  E  S  T  L  A  V  T  A  L  I  P  I  *  *  S  V  A  G  P  N  T  P  V  *  G  *  G  V  Q  Y  L  S  D  F  A  L  I  T  S  S  G  T  S  T  D  S  S  R  F  L  S  Y  T  D  </first_frame>
            <second_frame>  P  L  L  H  L  S  E  :  D  R  S  K  R  F  I  L  F  I  I  Q  I  F  D  S  I  L  F  C  T  L  Y  Y  R  F  K  F  F  K  K  I  T  T  D  *  K  K  F  K  H  K  L  A  S  Q  D  P  R  V  G  G  R  R  P  S  V  P  T  Q  N  L  H  *  Q  S  Q  P  *  Y  R  Y  D  D  Q  W  L  V  Q  T  H  Q  Y  E  D  E  E  S  S  T  Y  P  I  S  P  *  S  L  H  L  A  P  A  Q  T  P  P  D  S  Y  R  T  L  M </second_frame>
            <third_frame>   H  Y  Y  I  S  L  K :   I  E  V  K  D  S  Y  Y  L  *  Y  K  Y  L  I  A  S  Y  S  A  L  F  T  T  D  S  N  F  L  K  K  S  L  Q  I  E  R  N  L  N  I  S  W  L  L  K  I  L  E  W  A  E  E  G  L  L  F  Q  H  R  I  Y  T  S  S  H  S  P  D  T  D  M  M  I  S  G  W  S  K  H  T  S  M  R  M  R  S  P  V  L  I  R  F  R  L  D  H  F  I  W  H  Q  H  R  L  L  Q  I  L  I  V  H  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0113N10.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="21565" stop="21257"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>306</number_coding_nucleotides>
                  <number_encoded_amino_acids>102</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YKYLIASYSALFTTDSNFLKKSLQIERNLNISWLLKILEWAEEGLLFQHRIYTSSHSPDTDMMISGWSKHTSMRMRSPVLIRFRLDHFIWHQHRLLQILIVH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="24740" PGL_stop="22816"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="24740" e_stop="24428"/>
            <exon e_start="23798" e_stop="23523"/>
            <exon e_start="23366" e_stop="23097"/>
            <exon e_start="23014" e_stop="22816"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.983" acc_prob="0.949" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.998" e_score="0.989"/>
          <exon-only e_score="0.940"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="24740" e_stop="24428" e_length="313"/>
          </exon>
          <intron i_serial="1" don_prob="0.983" acc_prob="0.949">
            <gDNA_intron_boundary i_start="24427" i_stop="23799" i_length="629"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="23798" e_stop="23523" e_length="276"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.988">
            <gDNA_intron_boundary i_start="23522" i_stop="23367" i_length="156"/>
          </intron>
          <exon e_serial="3" e_score="0.989">
            <gDNA_exon_boundary e_start="23366" e_stop="23097" e_length="270"/>
          </exon>
          <intron i_serial="3" don_prob="0.994" acc_prob="0.998">
            <gDNA_intron_boundary i_start="23096" i_stop="23015" i_length="82"/>
          </intron>
          <exon e_serial="4" e_score="0.940">
            <gDNA_exon_boundary e_start="23014" e_stop="22816" e_length="199"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24740" stop="24428"/>
              <exon start="23798" stop="23645"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337213" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24724" stop="24428"/>
              <exon start="23798" stop="23525"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E469032" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24722" stop="24428"/>
              <exon start="23798" stop="23523"/>
              <exon start="23366" stop="23239"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E459985" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24714" stop="24428"/>
              <exon start="23798" stop="23523"/>
              <exon start="23366" stop="23289"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E468901" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24694" stop="24428"/>
              <exon start="23798" stop="23628"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E437937" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24683" stop="24428"/>
              <exon start="23798" stop="23737"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324919" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24676" stop="24428"/>
              <exon start="23798" stop="23523"/>
              <exon start="23366" stop="23229"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E560959" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24676" stop="24428"/>
              <exon start="23798" stop="23694"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E438887" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24452" stop="24428"/>
              <exon start="23798" stop="23523"/>
              <exon start="23366" stop="23175"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203020" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23798" stop="23523"/>
              <exon start="23366" stop="23097"/>
              <exon start="23014" stop="22816"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E418376" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23798" stop="23523"/>
              <exon start="23366" stop="23097"/>
              <exon start="23014" stop="23001"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E441434" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23795" stop="23523"/>
              <exon start="23366" stop="23237"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E473486" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTGCAGGACACAACTCGGGTCCTCTATCTTCTTCTTCTCTCTCTTCTCAAGCAAATCCGCAACGCGCACTTCCATTTTACTTGCTTTAATTTGTTCTTCAGTATTGTTATTGTTATTATAACTCTGATCTTCGTTTTGCAGGCTGTAATATTCTTGTTTCGTTTTTTTTATTGTGATCTCTGGTTTTGTATCTTTTTTTTTTGTGCTAACACCATGGATGCAGGATCATTGAGTTCTGTCTCAGCAAGTAAGAACAAATCTCGTTGCCCTCTTCAGGAACAATATCTACAAAAGAGAAATTCTCGGGATAAT : TTGGATAGGTTCATTCCTAATCGTTCGGCAATGGATATGGACTATGCACATTACATGTTGACAGAGGGAAGGAAAGGTAAGGAAAATCCAGCTGTTGATTCTCCCTCCAGAGAGGCATACAGGAAGCAGCTTGCGGAAACATTCAACATGAACAGGTCCCGCATATTGGCGTTCAAGAACAAGCCACCCACTTCTGTTGAGGGTATTCCAAACGACTTCTCATCATCTGTTCACCAACAGGCGAAGACTGCTAAACCGCGTCGATACATTCCTCAG : ACCTCTGAAAGGACATTAGATGCTCCAGATCTAGTGGATGACTACTATTTGAATTTGTTAGATTGGGGCAGCAGCAATGTTCTTTCTATTGCTCTAGGCAGCACTGTATATCTGTGGGATGCATCTGATGGTGCCACTTCAGAATTGGTCACTGTTGACGAAGAGCATGGTCCTGTTACAAGTGTTAAATGGGCTCCTGATGGTAGACATATTGCTCTTGGTTTGAACAATTCCGATGTTCAGCTCTGGGATACAACGGCAAATCGGCTG : CTGAGAACTATGAGAGGTGGTCACAGATCCCGAGTTGGCGCTCTAGATTGGAACAATCACTTATTAACAACTGGGGGCATGGATGGTCAGATCAGAAACAATGATGTGAGAGTGAGATCGCCAATTGTTGATACCTACCAAGGACATAACCAAGAAGTTTGTGGTTTAAAATGGTCAGCCTCTGGTCAACAATTAGCTA</gDNA_template>
            <first_frame> F  A  G  H  N  S  G  P  L  S  S  S  S  L  S  S  Q  A  N  P  Q  R  A  L  P  F  Y  L  L  *  F  V  L  Q  Y  C  Y  C  Y  Y  N  S  D  L  R  F  A  G  C  N  I  L  V  S  F  F  L  L  *  S  L  V  L  Y  L  F  F  L  C  *  H  H  G  C  R  I  I  E  F  C  L  S  K  *  E  Q  I  S  L  P  S  S  G  T  I  S  T  K  E  K  F  S  G  *   : F  G  *  V  H  S  *  S  F  G  N  G  Y  G  L  C  T  L  H  V  D  R  G  K  E  R  *  G  K  S  S  C  *  F  S  L  Q  R  G  I  Q  E  A  A  C  G  N  I  Q  H  E  Q  V  P  H  I  G  V  Q  E  Q  A  T  H  F  C  *  G  Y  S  K  R  L  L  I  I  C  S  P  T  G  E  D  C  *  T  A  S  I  H  S  S   : D  L  *  K  D  I  R  C  S  R  S  S  G  *  L  L  F  E  F  V  R  L  G  Q  Q  Q  C  S  F  Y  C  S  R  Q  H  C  I  S  V  G  C  I  *  W  C  H  F  R  I  G  H  C  *  R  R  A  W  S  C  Y  K  C  *  M  G  S  *  W  *  T  Y  C  S  W  F  E  Q  F  R  C  S  A  L  G  Y  N  G  K  S  A   : A  E  N  Y  E  R  W  S  Q  I  P  S  W  R  S  R  L  E  Q  S  L  I  N  N  W  G  H  G  W  S  D  Q  K  Q  *  C  E  S  E  I  A  N  C  *  Y  L  P  R  T  *  P  R  S  L  W  F  K  M  V  S  L  W  S  T  I  S   </first_frame>
            <second_frame>  L  Q  D  T  T  R  V  L  Y  L  L  L  L  S  L  L  K  Q  I  R  N  A  H  F  H  F  T  C  F  N  L  F  F  S  I  V  I  V  I  I  T  L  I  F  V  L  Q  A  V  I  F  L  F  R  F  F  Y  C  D  L  W  F  C  I  F  F  F  C  A  N  T  M  D  A  G  S  L  S  S  V  S  A  S  K  N  K  S  R  C  P  L  Q  E  Q  Y  L  Q  K  R  N  S  R  D  N  :  L  D  R  F  I  P  N  R  S  A  M  D  M  D  Y  A  H  Y  M  L  T  E  G  R  K  G  K  E  N  P  A  V  D  S  P  S  R  E  A  Y  R  K  Q  L  A  E  T  F  N  M  N  R  S  R  I  L  A  F  K  N  K  P  P  T  S  V  E  G  I  P  N  D  F  S  S  S  V  H  Q  Q  A  K  T  A  K  P  R  R  Y  I  P  Q  :  T  S  E  R  T  L  D  A  P  D  L  V  D  D  Y  Y  L  N  L  L  D  W  G  S  S  N  V  L  S  I  A  L  G  S  T  V  Y  L  W  D  A  S  D  G  A  T  S  E  L  V  T  V  D  E  E  H  G  P  V  T  S  V  K  W  A  P  D  G  R  H  I  A  L  G  L  N  N  S  D  V  Q  L  W  D  T  T  A  N  R  L  :  L  R  T  M  R  G  G  H  R  S  R  V  G  A  L  D  W  N  N  H  L  L  T  T  G  G  M  D  G  Q  I  R  N  N  D  V  R  V  R  S  P  I  V  D  T  Y  Q  G  H  N  Q  E  V  C  G  L  K  W  S  A  S  G  Q  Q  L  A  </second_frame>
            <third_frame>   C  R  T  Q  L  G  S  S  I  F  F  F  S  L  F  S  S  K  S  A  T  R  T  S  I  L  L  A  L  I  C  S  S  V  L  L  L  L  L  *  L  *  S  S  F  C  R  L  *  Y  S  C  F  V  F  F  I  V  I  S  G  F  V  S  F  F  F  V  L  T  P  W  M  Q  D  H  *  V  L  S  Q  Q  V  R  T  N  L  V  A  L  F  R  N  N  I  Y  K  R  E  I  L  G  I  I :   W  I  G  S  F  L  I  V  R  Q  W  I  W  T  M  H  I  T  C  *  Q  R  E  G  K  V  R  K  I  Q  L  L  I  L  P  P  E  R  H  T  G  S  S  L  R  K  H  S  T  *  T  G  P  A  Y  W  R  S  R  T  S  H  P  L  L  L  R  V  F  Q  T  T  S  H  H  L  F  T  N  R  R  R  L  L  N  R  V  D  T  F  L  R :   P  L  K  G  H  *  M  L  Q  I  *  W  M  T  T  I  *  I  C  *  I  G  A  A  A  M  F  F  L  L  L  *  A  A  L  Y  I  C  G  M  H  L  M  V  P  L  Q  N  W  S  L  L  T  K  S  M  V  L  L  Q  V  L  N  G  L  L  M  V  D  I  L  L  L  V  *  T  I  P  M  F  S  S  G  I  Q  R  Q  I  G  C :   *  E  L  *  E  V  V  T  D  P  E  L  A  L  *  I  G  T  I  T  Y  *  Q  L  G  A  W  M  V  R  S  E  T  M  M  *  E  *  D  R  Q  L  L  I  P  T  K  D  I  T  K  K  F  V  V  *  N  G  Q  P  L  V  N  N  *  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0113N10.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="24739" stop="24428"/>
                    <exon start="23798" stop="23523"/>
                    <exon start="23366" stop="23097"/>
                    <exon start="23014" stop="22817"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1056</number_coding_nucleotides>
                  <number_encoded_amino_acids>352</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LQDTTRVLYLLLLSLLKQIRNAHFHFTCFNLFFSIVIVIITLIFVLQAVIFLFRFFYCDLWFCIFFFCANTMDAGSLSSVSASKNKSRCPLQEQYLQKRNSRDNLDRFIPNRSAMDMDYAHYMLTEGRKGKENPAVDSPSREAYRKQLAETFNMNRSRILAFKNKPPTSVEGIPNDFSSSVHQQAKTAKPRRYIPQTSERTLDAPDLVDDYYLNLLDWGSSNVLSIALGSTVYLWDASDGATSELVTVDEEHGPVTSVKWAPDGRHIALGLNNSDVQLWDTTANRLLRTMRGGHRSRVGALDWNNHLLTTGGMDGQIRNNDVRVRSPIVDTYQGHNQEVCGLKWSASGQQLA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="32726" PGL_stop="26725"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="32726" e_stop="32325"/>
            <exon e_start="27110" e_stop="26725"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.821" e_score="1.000"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="32726" e_stop="32325" e_length="402"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.821">
            <gDNA_intron_boundary i_start="32324" i_stop="27111" i_length="5214"/>
          </intron>
          <exon e_serial="2" e_score="0.995">
            <gDNA_exon_boundary e_start="27110" e_stop="26725" e_length="386"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32726" stop="32325"/>
              <exon start="27110" stop="26725"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704883" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATTTTGACCGGAAACCCTATCCCTAGCCCCAAATTTTCGACCTAGCTTTTCCCATTTGCCAATCTGCAATTCCAATTCTTCGTTTATTTTCTGGAAACTCAGCAATCAAAACCCCCAATCATTTTCACCTGGCGTCGAGAATGTAGAACCAATTATTTTAGCATTTGATAGATATATTTGTGTGTTAATATACAAAATTATAGTTATAGAGAGATGGGGAGCTCTGAAACAGAATTAGGAACGGGGGATTGTGGAGTTGGGAGTATTGTTTGGGTCCGAAGGCGAAATGGATCGTGGTGGCCAGGTAAAATACTATGTCCTGATGAGTTTTCAGCTTCCCATTTGATGTCTCCACGATCTGGGACTCCAGTGAAGCTTCTTGGGAGAGAAGATGCCACTGT : ATGGTGCGGCATCTATAGAACTAGAACCAAAATATATAGGAAGATCTGAAGCACAACCTGAACGTGGGAGTATCAGCAGTGAAGAACTGGATGAAGTGACACTTACTGATGACACTTCTTCTCATGCTTATCACCAGAAATCTATTTCTGCTGGCTTTGGGGTGTCCAAATGGCAACTAAAAGGGAAAAGGAATAATCGAAGTCTTAACAGGAGGCCTCTGGATCCTTTTGATGGAAACCTTGCGAGTTTCAAGGGAAAGAGGGGTTATGTATGTCTTCAAGATGACCCCCTTACGAGATCTTGGGCGCAAAATGCTAGATATGGATCAAGAGCTCCACGTCCTGCTAGTCAAAACATGTTCAATTGTGTGGATTGGGCTTGGGAT</gDNA_template>
            <first_frame> N  F  D  R  K  P  Y  P  *  P  Q  I  F  D  L  A  F  P  I  C  Q  S  A  I  P  I  L  R  L  F  S  G  N  S  A  I  K  T  P  N  H  F  H  L  A  S  R  M  *  N  Q  L  F  *  H  L  I  D  I  F  V  C  *  Y  T  K  L  *  L  *  R  D  G  E  L  *  N  R  I  R  N  G  G  L  W  S  W  E  Y  C  L  G  P  K  A  K  W  I  V  V  A  R  *  N  T  M  S  *  *  V  F  S  F  P  F  D  V  S  T  I  W  D  S  S  E  A  S  W  E  R  R  C  H  C  :  M  V  R  H  L  *  N  *  N  Q  N  I  *  E  D  L  K  H  N  L  N  V  G  V  S  A  V  K  N  W  M  K  *  H  L  L  M  T  L  L  L  M  L  I  T  R  N  L  F  L  L  A  L  G  C  P  N  G  N  *  K  G  K  G  I  I  E  V  L  T  G  G  L  W  I  L  L  M  E  T  L  R  V  S  R  E  R  G  V  M  Y  V  F  K  M  T  P  L  R  D  L  G  R  K  M  L  D  M  D  Q  E  L  H  V  L  L  V  K  T  C  S  I  V  W  I  G  L  G   </first_frame>
            <second_frame>  I  L  T  G  N  P  I  P  S  P  K  F  S  T  *  L  F  P  F  A  N  L  Q  F  Q  F  F  V  Y  F  L  E  T  Q  Q  S  K  P  P  I  I  F  T  W  R  R  E  C  R  T  N  Y  F  S  I  *  *  I  Y  L  C  V  N  I  Q  N  Y  S  Y  R  E  M  G  S  S  E  T  E  L  G  T  G  D  C  G  V  G  S  I  V  W  V  R  R  R  N  G  S  W  W  P  G  K  I  L  C  P  D  E  F  S  A  S  H  L  M  S  P  R  S  G  T  P  V  K  L  L  G  R  E  D  A  T  V :   W  C  G  I  Y  R  T  R  T  K  I  Y  R  K  I  *  S  T  T  *  T  W  E  Y  Q  Q  *  R  T  G  *  S  D  T  Y  *  *  H  F  F  S  C  L  S  P  E  I  Y  F  C  W  L  W  G  V  Q  M  A  T  K  R  E  K  E  *  S  K  S  *  Q  E  A  S  G  S  F  *  W  K  P  C  E  F  Q  G  K  E  G  L  C  M  S  S  R  *  P  P  Y  E  I  L  G  A  K  C  *  I  W  I  K  S  S  T  S  C  *  S  K  H  V  Q  L  C  G  L  G  L  G  </second_frame>
            <third_frame>   F  *  P  E  T  L  S  L  A  P  N  F  R  P  S  F  S  H  L  P  I  C  N  S  N  S  S  F  I  F  W  K  L  S  N  Q  N  P  Q  S  F  S  P  G  V  E  N  V  E  P  I  I  L  A  F  D  R  Y  I  C  V  L  I  Y  K  I  I  V  I  E  R  W  G  A  L  K  Q  N  *  E  R  G  I  V  E  L  G  V  L  F  G  S  E  G  E  M  D  R  G  G  Q  V  K  Y  Y  V  L  M  S  F  Q  L  P  I  *  C  L  H  D  L  G  L  Q  *  S  F  L  G  E  K  M  P  L   : Y  G  A  A  S  I  E  L  E  P  K  Y  I  G  R  S  E  A  Q  P  E  R  G  S  I  S  S  E  E  L  D  E  V  T  L  T  D  D  T  S  S  H  A  Y  H  Q  K  S  I  S  A  G  F  G  V  S  K  W  Q  L  K  G  K  R  N  N  R  S  L  N  R  R  P  L  D  P  F  D  G  N  L  A  S  F  K  G  K  R  G  Y  V  C  L  Q  D  D  P  L  T  R  S  W  A  Q  N  A  R  Y  G  S  R  A  P  R  P  A  S  Q  N  M  F  N  C  V  D  W  A  W  D </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0113N10.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="32352" stop="32325"/>
                    <exon start="27110" stop="26725"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>414</number_coding_nucleotides>
                  <number_encoded_amino_acids>138</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SFLGEKMPLYGAASIELEPKYIGRSEAQPERGSISSEELDEVTLTDDTSSHAYHQKSISAGFGVSKWQLKGKRNNRSLNRRPLDPFDGNLASFKGKRGYVCLQDDPLTRSWAQNARYGSRAPRPASQNMFNCVDWAWD</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0113N10.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="32718" stop="32488"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>228</number_coding_nucleotides>
                  <number_encoded_amino_acids>76</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PETLSLAPNFRPSFSHLPICNSNSSFIFWKLSNQNPQSFSPGVENVEPIILAFDRYICVLIYKIIVIERWGALKQN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="34904" PGL_stop="36359"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="34904" e_stop="35084"/>
            <exon e_start="35877" e_stop="36359"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.907" e_score="1.000"/>
          <exon-only e_score="0.975"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="34904" e_stop="35084" e_length="181"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.907">
            <gDNA_intron_boundary i_start="35085" i_stop="35876" i_length="792"/>
          </intron>
          <exon e_serial="2" e_score="0.975">
            <gDNA_exon_boundary e_start="35877" e_stop="36359" e_length="483"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34904" stop="35084"/>
              <exon start="35877" stop="36180"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322780" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34921" stop="35084"/>
              <exon start="35877" stop="36359"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E483222" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34980" stop="35084"/>
              <exon start="35877" stop="36064"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E486729" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGAAATCCCTTTCCCCCCTCCCCCAAACAATCGTAAATCGATTTCCTGTTTCATTTTAGCAGCTGAGATGGATTTCCACAGCCTCGCTAGGAGAGAATTGCAAGCTCTTTGCAAGAAGAACAAGATCCCAGCTAACATAACCAATGTTGCCATGGCTGATGCTCTTCAATCTCTTGAATTT : GTTGACGGTATTGAAGAGGTCTTGAAAACATGTGAATCTGATGTTGCCAACTCATCCATGGAATCCCCTGGAAAGTCAGAAGCATTAGCAAGTGTACCTCGGACTGGTCGCCGAACTACACAACGAAAGACTATCAAACATGACTCAGAAACTATGCAGACCACGACAAGGAGTCACTGCAGAACAAGAGGAACGGTGGTAAGAGACATTGATGAAGCCAAAAAGGATATGCTGGAGACTCCTGCATTGCCAACTACCAGAAGGAGGGCTGCAACAACTTCAGTTCGTGTTAAGCTGGAATCTGCAATGAAGGAATGTGAACCAAAAGAGGAAATTGTGGATCAGGTTGAGGAAGAAAAGAAAGATGTTCCAAAGACACCAGCAGCTGCTCTCACTAGCCAAAGAAAGGAAGTGAAGGCAAAGAGTTCAGTTAGGCAAGTGTACAGCACTCGTCGATCAGTGAGGTTAGCTGGGAAACCTACG</gDNA_template>
            <first_frame> R  N  P  F  P  P  S  P  K  Q  S  *  I  D  F  L  F  H  F  S  S  *  D  G  F  P  Q  P  R  *  E  R  I  A  S  S  L  Q  E  E  Q  D  P  S  *  H  N  Q  C  C  H  G  *  C  S  S  I  S  *  I   : C  *  R  Y  *  R  G  L  E  N  M  *  I  *  C  C  Q  L  I  H  G  I  P  W  K  V  R  S  I  S  K  C  T  S  D  W  S  P  N  Y  T  T  K  D  Y  Q  T  *  L  R  N  Y  A  D  H  D  K  E  S  L  Q  N  K  R  N  G  G  K  R  H  *  *  S  Q  K  G  Y  A  G  D  S  C  I  A  N  Y  Q  K  E  G  C  N  N  F  S  S  C  *  A  G  I  C  N  E  G  M  *  T  K  R  G  N  C  G  S  G  *  G  R  K  E  R  C  S  K  D  T  S  S  C  S  H  *  P  K  K  G  S  E  G  K  E  F  S  *  A  S  V  Q  H  S  S  I  S  E  V  S  W  E  T  Y  </first_frame>
            <second_frame>  E  I  P  F  P  P  P  P  N  N  R  K  S  I  S  C  F  I  L  A  A  E  M  D  F  H  S  L  A  R  R  E  L  Q  A  L  C  K  K  N  K  I  P  A  N  I  T  N  V  A  M  A  D  A  L  Q  S  L  E  F  :  V  D  G  I  E  E  V  L  K  T  C  E  S  D  V  A  N  S  S  M  E  S  P  G  K  S  E  A  L  A  S  V  P  R  T  G  R  R  T  T  Q  R  K  T  I  K  H  D  S  E  T  M  Q  T  T  T  R  S  H  C  R  T  R  G  T  V  V  R  D  I  D  E  A  K  K  D  M  L  E  T  P  A  L  P  T  T  R  R  R  A  A  T  T  S  V  R  V  K  L  E  S  A  M  K  E  C  E  P  K  E  E  I  V  D  Q  V  E  E  E  K  K  D  V  P  K  T  P  A  A  A  L  T  S  Q  R  K  E  V  K  A  K  S  S  V  R  Q  V  Y  S  T  R  R  S  V  R  L  A  G  K  P  T </second_frame>
            <third_frame>   K  S  L  S  P  L  P  Q  T  I  V  N  R  F  P  V  S  F  *  Q  L  R  W  I  S  T  A  S  L  G  E  N  C  K  L  F  A  R  R  T  R  S  Q  L  T  *  P  M  L  P  W  L  M  L  F  N  L  L  N  L :   L  T  V  L  K  R  S  *  K  H  V  N  L  M  L  P  T  H  P  W  N  P  L  E  S  Q  K  H  *  Q  V  Y  L  G  L  V  A  E  L  H  N  E  R  L  S  N  M  T  Q  K  L  C  R  P  R  Q  G  V  T  A  E  Q  E  E  R  W  *  E  T  L  M  K  P  K  R  I  C  W  R  L  L  H  C  Q  L  P  E  G  G  L  Q  Q  L  Q  F  V  L  S  W  N  L  Q  *  R  N  V  N  Q  K  R  K  L  W  I  R  L  R  K  K  R  K  M  F  Q  R  H  Q  Q  L  L  S  L  A  K  E  R  K  *  R  Q  R  V  Q  L  G  K  C  T  A  L  V  D  Q  *  G  *  L  G  N  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0113N10.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="34905" stop="35084"/>
                    <exon start="35877" stop="36359"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>663</number_coding_nucleotides>
                  <number_encoded_amino_acids>221</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EIPFPPPPNNRKSISCFILAAEMDFHSLARRELQALCKKNKIPANITNVAMADALQSLEFVDGIEEVLKTCESDVANSSMESPGKSEALASVPRTGRRTTQRKTIKHDSETMQTTTRSHCRTRGTVVRDIDEAKKDMLETPALPTTRRRAATTSVRVKLESAMKECEPKEEIVDQVEEEKKDVPKTPAAALTSQRKEVKAKSSVRQVYSTRRSVRLAGKPT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="37586" PGL_stop="38484"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="37586" e_stop="38037"/>
            <exon e_start="38148" e_stop="38484"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="37586" e_stop="38037" e_length="452"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.998">
            <gDNA_intron_boundary i_start="38038" i_stop="38147" i_length="110"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="38148" e_stop="38484" e_length="337"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37586" stop="38037"/>
              <exon start="38148" stop="38484"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344545" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTGCTGGAGAAGAAGAACAACCCATGGAAGAATTTGATGTTGATGGTACTGAGGCTAGCGTGGTTGCACCAGCTGATGCTCAGGAAGTTGCTGGAGATGAATCCATGGATGACTCAGAAATTGATTATGTTGAGGCTACTGTGGAGAGTGCAGCTCACAGTCTTCCCCCCTTGCCTGCCCCAGAACCAGTCCTCACTCTGGCGCTGGATACGATGCAAAATCCTTCTGCCTTGACAAGCACAAATTCAGAACTCATCACTCAGACACCAGTTGAGAATTCATCAGCAGTGACAAGCATAGGACAGATGCTTGTTACAGATAACAAGGAAAACTTGGTTTGTACGAAAGAAAATAAAGGCACTGCTGGTGATAACTTGCAAAATTTAAGCTTGAGGAAGCTTACAAAAATGTTGAAAGATTTGAACATATCAAAAAATCCTAGTGGAAAGGAG : GCAGTAACAAGATCAGCCTTGCAAAAAGTTCCAGAAAACCGTTTGATCAGTGAAAACGAAAACTGAAGCTCGTAATAGGGGCAGACCACTCCGCCTGCCATTAAGATGGAAGATTGAAGCTCTGCAAACCTTCTTGATTTGCTACTTTTGAGACATCAAAATTTATTATCCCTGTTGTTTTGTGTTTCTTCAGTTATTTTTCAATACTTGTATGATTAAAACAAAATTACTCATATGATGATGATGAATGAAATCCGTCAAACTTCTCTTCAATTCACCTGAATTATTCTCTTTGTCAATCTATATCTTTGAAACTCAAATTGAATAAAAAACTTGG</gDNA_template>
            <first_frame> L  L  E  K  K  N  N  P  W  K  N  L  M  L  M  V  L  R  L  A  W  L  H  Q  L  M  L  R  K  L  L  E  M  N  P  W  M  T  Q  K  L  I  M  L  R  L  L  W  R  V  Q  L  T  V  F  P  P  C  L  P  Q  N  Q  S  S  L  W  R  W  I  R  C  K  I  L  L  P  *  Q  A  Q  I  Q  N  S  S  L  R  H  Q  L  R  I  H  Q  Q  *  Q  A  *  D  R  C  L  L  Q  I  T  R  K  T  W  F  V  R  K  K  I  K  A  L  L  V  I  T  C  K  I  *  A  *  G  S  L  Q  K  C  *  K  I  *  T  Y  Q  K  I  L  V  E  R  R :   Q  *  Q  D  Q  P  C  K  K  F  Q  K  T  V  *  S  V  K  T  K  T  E  A  R  N  R  G  R  P  L  R  L  P  L  R  W  K  I  E  A  L  Q  T  F  L  I  C  Y  F  *  D  I  K  I  Y  Y  P  C  C  F  V  F  L  Q  L  F  F  N  T  C  M  I  K  T  K  L  L  I  *  *  *  *  M  K  S  V  K  L  L  F  N  S  P  E  L  F  S  L  S  I  Y  I  F  E  T  Q  I  E  *  K  T  W </first_frame>
            <second_frame>  C  W  R  R  R  T  T  H  G  R  I  *  C  *  W  Y  *  G  *  R  G  C  T  S  *  C  S  G  S  C  W  R  *  I  H  G  *  L  R  N  *  L  C  *  G  Y  C  G  E  C  S  S  Q  S  S  P  L  A  C  P  R  T  S  P  H  S  G  A  G  Y  D  A  K  S  F  C  L  D  K  H  K  F  R  T  H  H  S  D  T  S  *  E  F  I  S  S  D  K  H  R  T  D  A  C  Y  R  *  Q  G  K  L  G  L  Y  E  R  K  *  R  H  C  W  *  *  L  A  K  F  K  L  E  E  A  Y  K  N  V  E  R  F  E  H  I  K  K  S  *  W  K  G   : G  S  N  K  I  S  L  A  K  S  S  R  K  P  F  D  Q  *  K  R  K  L  K  L  V  I  G  A  D  H  S  A  C  H  *  D  G  R  L  K  L  C  K  P  S  *  F  A  T  F  E  T  S  K  F  I  I  P  V  V  L  C  F  F  S  Y  F  S  I  L  V  *  L  K  Q  N  Y  S  Y  D  D  D  E  *  N  P  S  N  F  S  S  I  H  L  N  Y  S  L  C  Q  S  I  S  L  K  L  K  L  N  K  K  L   </second_frame>
            <third_frame>   A  G  E  E  E  Q  P  M  E  E  F  D  V  D  G  T  E  A  S  V  V  A  P  A  D  A  Q  E  V  A  G  D  E  S  M  D  D  S  E  I  D  Y  V  E  A  T  V  E  S  A  A  H  S  L  P  P  L  P  A  P  E  P  V  L  T  L  A  L  D  T  M  Q  N  P  S  A  L  T  S  T  N  S  E  L  I  T  Q  T  P  V  E  N  S  S  A  V  T  S  I  G  Q  M  L  V  T  D  N  K  E  N  L  V  C  T  K  E  N  K  G  T  A  G  D  N  L  Q  N  L  S  L  R  K  L  T  K  M  L  K  D  L  N  I  S  K  N  P  S  G  K  E  :  A  V  T  R  S  A  L  Q  K  V  P  E  N  R  L  I  S  E  N  E  N  *  S  S  *  *  G  Q  T  T  P  P  A  I  K  M  E  D  *  S  S  A  N  L  L  D  L  L  L  L  R  H  Q  N  L  L  S  L  L  F  C  V  S  S  V  I  F  Q  Y  L  Y  D  *  N  K  I  T  H  M  M  M  M  N  E  I  R  Q  T  S  L  Q  F  T  *  I  I  L  F  V  N  L  Y  L  *  N  S  N  *  I  K  N  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0113N10.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="37588" stop="38037"/>
                    <exon start="38148" stop="38213"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>513</number_coding_nucleotides>
                  <number_encoded_amino_acids>171</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AGEEEQPMEEFDVDGTEASVVAPADAQEVAGDESMDDSEIDYVEATVESAAHSLPPLPAPEPVLTLALDTMQNPSALTSTNSELITQTPVENSSAVTSIGQMLVTDNKENLVCTKENKGTAGDNLQNLSLRKLTKMLKDLNISKNPSGKEAVTRSALQKVPENRLISENEN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="44498" PGL_stop="38909"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="44498" e_stop="44201"/>
            <exon e_start="42248" e_stop="42158"/>
            <exon e_start="41578" e_stop="41463"/>
            <exon e_start="41134" e_stop="41075"/>
            <exon e_start="40992" e_stop="40927"/>
            <exon e_start="39501" e_stop="39302"/>
            <exon e_start="39220" e_stop="38909"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.661" acc_prob="0.930" e_score="1.000"/>
          <exon-intron don_prob="0.679" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.890" acc_prob="0.960" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.892" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="44498" e_stop="44201" e_length="298"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="44200" i_stop="42249" i_length="1952"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="42248" e_stop="42158" e_length="91"/>
          </exon>
          <intron i_serial="2" don_prob="0.661" acc_prob="0.930">
            <gDNA_intron_boundary i_start="42157" i_stop="41579" i_length="579"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="41578" e_stop="41463" e_length="116"/>
          </exon>
          <intron i_serial="3" don_prob="0.679" acc_prob="0.999">
            <gDNA_intron_boundary i_start="41462" i_stop="41135" i_length="328"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="41134" e_stop="41075" e_length="60"/>
          </exon>
          <intron i_serial="4" don_prob="0.890" acc_prob="0.960">
            <gDNA_intron_boundary i_start="41074" i_stop="40993" i_length="82"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="40992" e_stop="40927" e_length="66"/>
          </exon>
          <intron i_serial="5" don_prob="0.983" acc_prob="0.993">
            <gDNA_intron_boundary i_start="40926" i_stop="39502" i_length="1425"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="39501" e_stop="39302" e_length="200"/>
          </exon>
          <intron i_serial="6" don_prob="0.892" acc_prob="0.999">
            <gDNA_intron_boundary i_start="39301" i_stop="39221" i_length="81"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="39220" e_stop="38909" e_length="312"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44498" stop="44201"/>
              <exon start="42248" stop="42158"/>
              <exon start="41578" stop="41463"/>
              <exon start="41134" stop="41075"/>
              <exon start="40992" stop="40967"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688257" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44498" stop="44201"/>
              <exon start="42248" stop="42158"/>
              <exon start="41578" stop="41463"/>
              <exon start="41134" stop="41075"/>
              <exon start="40992" stop="40967"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550622" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44497" stop="44201"/>
              <exon start="42248" stop="42158"/>
              <exon start="41578" stop="41546"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272248" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44496" stop="44201"/>
              <exon start="42248" stop="42158"/>
              <exon start="41578" stop="41463"/>
              <exon start="41134" stop="41075"/>
              <exon start="40992" stop="40927"/>
              <exon start="39501" stop="39473"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E573665" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44492" stop="44201"/>
              <exon start="42248" stop="42161"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335740" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44473" stop="44201"/>
              <exon start="42248" stop="42158"/>
              <exon start="41578" stop="41463"/>
              <exon start="41134" stop="41075"/>
              <exon start="40992" stop="40927"/>
              <exon start="39501" stop="39394"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E619561" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42203" stop="42158"/>
              <exon start="41578" stop="41463"/>
              <exon start="41134" stop="41075"/>
              <exon start="40992" stop="40927"/>
              <exon start="39501" stop="39302"/>
              <exon start="39220" stop="38923"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E619947" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41108" stop="41075"/>
              <exon start="40992" stop="40927"/>
              <exon start="39501" stop="39302"/>
              <exon start="39220" stop="39089"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270341" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41105" stop="41075"/>
              <exon start="40992" stop="40927"/>
              <exon start="39501" stop="39302"/>
              <exon start="39220" stop="38909"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370913" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41101" stop="41075"/>
              <exon start="40992" stop="40927"/>
              <exon start="39501" stop="39302"/>
              <exon start="39220" stop="38909"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370912" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39375" stop="39302"/>
              <exon start="39220" stop="38921"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349473" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39375" stop="39302"/>
              <exon start="39220" stop="38921"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354959" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTCAGAAAAGTTGCAGAAACTAAGGAAAAACAACGCTACCTTCTCCATATTTCTTCGGTTTATCAAATCGATAATCATCAAAATAAAGTATGAAGTTTTAAAGTTTGTCAGATCACCAAATTATAGTACAGATTAGCTCTAATTTGGATCCTTCACGTTTCACTCACCAATTTCATCTGATTCGCTTTTGGAGAAACGAAAAAAGGAGTGAAGAAGAAGAAGAGAAAAGGCAAAAGGCATAATGGGACAAGCTTTTCGCAAGCTATTTGATACTTTCTTCGGCAACTCTGAGATGAGG : GTTGTGATGCTAGGGCTGGATGCGGCTGGGAAAACAACTATATTGTACAAGCTGCATATAGGAGAAGTTCTGTCTACAGTTCCTACTATTG : GTTTCAATGTAGAAAAAGTGCAGTACAAGAATGTGGTTTTTACTGTGTGGGACGTTGGAGGACAAGAGAAACTAAGACCACTTTGGAGGCATTATTTCAATAACACAGATGGACTG : ATTTACGTCGTTGACTCTTTGGATCGAGAGAGAATCGGAAAGGCAAAGCAAGAGTTTCAG : GCAATCATTAGAGATCCATTTATGCTTAATGCTGTTATCTTGGTTTTCGCTAACAAGCAGGACATG : AAAGGAGCAATGACTCCAATGGAAGTGTGTGAAGGCCTCGGTCTTTATGATCTTAAAAACCGGAAATGGCATATACAAGGTGCATGTGCTCTTAAAGGGGATGGTCTATATGAGGGACTAGACTGGTTATCAAGCACTTTGAAAGATCTCAAGGCCGCTGGGTACTCTTCAGTGGGGACTTCTGCCTTCTGATTGATCAG : GCTTACTAAGAACCTATTTCGAGGGACAAAGCTGATTACCCTGCCGTCTGTAAATTAAAACGCCTGAACTCACATTGAACATTGTTACTTGTTCTTTCGGGTCTGTGCTTTTAAATAGTGGAATCCTGATCTAGGGTGAAGCTTGACTTTTGATTCTGCTGTATCCTGAAAATGTGGGCCTTGCAATTGGTCTTCCGCGTATACAAGAATTGTGTATGTTGATACCTACTGTAGTATTTTAAGTATGTATAACTTCCACATGAAATAGGTGATCATTGATCTCCCTAACAAGCATGCCAAATCGATCCCCTT</gDNA_template>
            <first_frame> L  R  K  V  A  E  T  K  E  K  Q  R  Y  L  L  H  I  S  S  V  Y  Q  I  D  N  H  Q  N  K  V  *  S  F  K  V  C  Q  I  T  K  L  *  Y  R  L  A  L  I  W  I  L  H  V  S  L  T  N  F  I  *  F  A  F  G  E  T  K  K  G  V  K  K  K  K  R  K  G  K  R  H  N  G  T  S  F  S  Q  A  I  *  Y  F  L  R  Q  L  *  D  E   : G  C  D  A  R  A  G  C  G  W  E  N  N  Y  I  V  Q  A  A  Y  R  R  S  S  V  Y  S  S  Y  Y  W :   F  Q  C  R  K  S  A  V  Q  E  C  G  F  Y  C  V  G  R  W  R  T  R  E  T  K  T  T  L  E  A  L  F  Q  *  H  R  W  T   : D  L  R  R  *  L  F  G  S  R  E  N  R  K  G  K  A  R  V  S   : G  N  H  *  R  S  I  Y  A  *  C  C  Y  L  G  F  R  *  Q  A  G  H   : E  R  S  N  D  S  N  G  S  V  *  R  P  R  S  L  *  S  *  K  P  E  M  A  Y  T  R  C  M  C  S  *  R  G  W  S  I  *  G  T  R  L  V  I  K  H  F  E  R  S  Q  G  R  W  V  L  F  S  G  D  F  C  L  L  I  D  Q  :  A  Y  *  E  P  I  S  R  D  K  A  D  Y  P  A  V  C  K  L  K  R  L  N  S  H  *  T  L  L  L  V  L  S  G  L  C  F  *  I  V  E  S  *  S  R  V  K  L  D  F  *  F  C  C  I  L  K  M  W  A  L  Q  L  V  F  R  V  Y  K  N  C  V  C  *  Y  L  L  *  Y  F  K  Y  V  *  L  P  H  E  I  G  D  H  *  S  P  *  Q  A  C  Q  I  D  P  L </first_frame>
            <second_frame>  S  E  K  L  Q  K  L  R  K  N  N  A  T  F  S  I  F  L  R  F  I  K  S  I  I  I  K  I  K  Y  E  V  L  K  F  V  R  S  P  N  Y  S  T  D  *  L  *  F  G  S  F  T  F  H  S  P  I  S  S  D  S  L  L  E  K  R  K  K  E  *  R  R  R  R  E  K  A  K  G  I  M  G  Q  A  F  R  K  L  F  D  T  F  F  G  N  S  E  M  R  :  V  V  M  L  G  L  D  A  A  G  K  T  T  I  L  Y  K  L  H  I  G  E  V  L  S  T  V  P  T  I   : G  F  N  V  E  K  V  Q  Y  K  N  V  V  F  T  V  W  D  V  G  G  Q  E  K  L  R  P  L  W  R  H  Y  F  N  N  T  D  G  L  :  I  Y  V  V  D  S  L  D  R  E  R  I  G  K  A  K  Q  E  F  Q  :  A  I  I  R  D  P  F  M  L  N  A  V  I  L  V  F  A  N  K  Q  D  M  :  K  G  A  M  T  P  M  E  V  C  E  G  L  G  L  Y  D  L  K  N  R  K  W  H  I  Q  G  A  C  A  L  K  G  D  G  L  Y  E  G  L  D  W  L  S  S  T  L  K  D  L  K  A  A  G  Y  S  S  V  G  T  S  A  F  *  L  I  R :   L  T  K  N  L  F  R  G  T  K  L  I  T  L  P  S  V  N  *  N  A  *  T  H  I  E  H  C  Y  L  F  F  R  V  C  A  F  K  *  W  N  P  D  L  G  *  S  L  T  F  D  S  A  V  S  *  K  C  G  P  C  N  W  S  S  A  Y  T  R  I  V  Y  V  D  T  Y  C  S  I  L  S  M  Y  N  F  H  M  K  *  V  I  I  D  L  P  N  K  H  A  K  S  I  P   </second_frame>
            <third_frame>   Q  K  S  C  R  N  *  G  K  T  T  L  P  S  P  Y  F  F  G  L  S  N  R  *  S  S  K  *  S  M  K  F  *  S  L  S  D  H  Q  I  I  V  Q  I  S  S  N  L  D  P  S  R  F  T  H  Q  F  H  L  I  R  F  W  R  N  E  K  R  S  E  E  E  E  E  K  R  Q  K  A  *  W  D  K  L  F  A  S  Y  L  I  L  S  S  A  T  L  R  *  G :   L  *  C  *  G  W  M  R  L  G  K  Q  L  Y  C  T  S  C  I  *  E  K  F  C  L  Q  F  L  L  L  :  V  S  M  *  K  K  C  S  T  R  M  W  F  L  L  C  G  T  L  E  D  K  R  N  *  D  H  F  G  G  I  I  S  I  T  Q  M  D  * :   F  T  S  L  T  L  W  I  E  R  E  S  E  R  Q  S  K  S  F  R :   Q  S  L  E  I  H  L  C  L  M  L  L  S  W  F  S  L  T  S  R  T  * :   K  E  Q  *  L  Q  W  K  C  V  K  A  S  V  F  M  I  L  K  T  G  N  G  I  Y  K  V  H  V  L  L  K  G  M  V  Y  M  R  D  *  T  G  Y  Q  A  L  *  K  I  S  R  P  L  G  T  L  Q  W  G  L  L  P  S  D  *  S   : G  L  L  R  T  Y  F  E  G  Q  S  *  L  P  C  R  L  *  I  K  T  P  E  L  T  L  N  I  V  T  C  S  F  G  S  V  L  L  N  S  G  I  L  I  *  G  E  A  *  L  L  I  L  L  Y  P  E  N  V  G  L  A  I  G  L  P  R  I  Q  E  L  C  M  L  I  P  T  V  V  F  *  V  C  I  T  S  T  *  N  R  *  S  L  I  S  L  T  S  M  P  N  R  S  P  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0113N10.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="44287" stop="44201"/>
                    <exon start="42248" stop="42158"/>
                    <exon start="41578" stop="41463"/>
                    <exon start="41134" stop="41075"/>
                    <exon start="40992" stop="40927"/>
                    <exon start="39501" stop="39310"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>609</number_coding_nucleotides>
                  <number_encoded_amino_acids>203</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RRRREKAKGIMGQAFRKLFDTFFGNSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVVFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIRDPFMLNAVILVFANKQDMKGAMTPMEVCEGLGLYDLKNRKWHIQGACALKGDGLYEGLDWLSSTLKDLKAAGYSSVGTSAF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="42856" e_stop="42227"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="42856" e_stop="42227" e_length="630"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42856" stop="42227"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271827" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGAATTCGAGCTACCTAGTGGCTTGATATTGCTCAGTGACCTCCCAGTTCAATGAAAGGCCTCTAAAATGGCCATTGTTACATCAGTAGAGATAGAGATCAATAGAGACCTTCAATGTGTCAAAGATCTCATCTTTTCCATCATCCTTATTTTATCTTTTCAAATAGGTAATCATCATGAATTTGTATGAAGTACTATCTCACATATATCATGTCTGCCGTCTACTAATGTGGTGCCCACATTAGTCATTACTGACAGCATAGGGAGGGACTTGGGGAAGGGAACAGAGATTTTCTTGGAGGAAAAACCAATTTTCTTTCTGCAATGACTTTTTGCCTGCTCTGTAATGAAAATGATTACTACGAATGGTTGGGTTGTTGCGGCAGGTTTACGATGAAGTAATGCTTATTTCTCATCATCCATCCATCAGCTTTCATAGACCACTGCCTAATGTTCACTACACACCTTTTGTCTCTGATTATTTACTTAGTTGATTATTCTTCTTGTATGTGTAACTAATTATCTTACGCCTTTCACAATTACCATTTTCATTATTTTTTTAAATCTTATCCCTTTCTGCTGTGTTTACTATGATTTGCTTGGTATAGGTTGTGATGCTAGGGCTGGATG</gDNA_template>
            <first_frame> R  I  R  A  T  *  W  L  D  I  A  Q  *  P  P  S  S  M  K  G  L  *  N  G  H  C  Y  I  S  R  D  R  D  Q  *  R  P  S  M  C  Q  R  S  H  L  F  H  H  P  Y  F  I  F  S  N  R  *  S  S  *  I  C  M  K  Y  Y  L  T  Y  I  M  S  A  V  Y  *  C  G  A  H  I  S  H  Y  *  Q  H  R  E  G  L  G  E  G  N  R  D  F  L  G  G  K  T  N  F  L  S  A  M  T  F  C  L  L  C  N  E  N  D  Y  Y  E  W  L  G  C  C  G  R  F  T  M  K  *  C  L  F  L  I  I  H  P  S  A  F  I  D  H  C  L  M  F  T  T  H  L  L  S  L  I  I  Y  L  V  D  Y  S  S  C  M  C  N  *  L  S  Y  A  F  H  N  Y  H  F  H  Y  F  F  K  S  Y  P  F  L  L  C  L  L  *  F  A  W  Y  R  L  *  C  *  G  W  M </first_frame>
            <second_frame>  E  F  E  L  P  S  G  L  I  L  L  S  D  L  P  V  Q  *  K  A  S  K  M  A  I  V  T  S  V  E  I  E  I  N  R  D  L  Q  C  V  K  D  L  I  F  S  I  I  L  I  L  S  F  Q  I  G  N  H  H  E  F  V  *  S  T  I  S  H  I  S  C  L  P  S  T  N  V  V  P  T  L  V  I  T  D  S  I  G  R  D  L  G  K  G  T  E  I  F  L  E  E  K  P  I  F  F  L  Q  *  L  F  A  C  S  V  M  K  M  I  T  T  N  G  W  V  V  A  A  G  L  R  *  S  N  A  Y  F  S  S  S  I  H  Q  L  S  *  T  T  A  *  C  S  L  H  T  F  C  L  *  L  F  T  *  L  I  I  L  L  V  C  V  T  N  Y  L  T  P  F  T  I  T  I  F  I  I  F  L  N  L  I  P  F  C  C  V  Y  Y  D  L  L  G  I  G  C  D  A  R  A  G   </second_frame>
            <third_frame>   N  S  S  Y  L  V  A  *  Y  C  S  V  T  S  Q  F  N  E  R  P  L  K  W  P  L  L  H  Q  *  R  *  R  S  I  E  T  F  N  V  S  K  I  S  S  F  P  S  S  L  F  Y  L  F  K  *  V  I  I  M  N  L  Y  E  V  L  S  H  I  Y  H  V  C  R  L  L  M  W  C  P  H  *  S  L  L  T  A  *  G  G  T  W  G  R  E  Q  R  F  S  W  R  K  N  Q  F  S  F  C  N  D  F  L  P  A  L  *  *  K  *  L  L  R  M  V  G  L  L  R  Q  V  Y  D  E  V  M  L  I  S  H  H  P  S  I  S  F  H  R  P  L  P  N  V  H  Y  T  P  F  V  S  D  Y  L  L  S  *  L  F  F  L  Y  V  *  L  I  I  L  R  L  S  Q  L  P  F  S  L  F  F  *  I  L  S  L  S  A  V  F  T  M  I  C  L  V  *  V  V  M  L  G  L  D  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06SLm0113N10.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="48788" PGL_stop="45779"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="48788" e_stop="48681"/>
            <exon e_start="47971" e_stop="47707"/>
            <exon e_start="46798" e_stop="46531"/>
            <exon e_start="46459" e_stop="45779"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.945" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.910" acc_prob="0.879" e_score="1.000"/>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="48788" e_stop="48681" e_length="108"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.945">
            <gDNA_intron_boundary i_start="48680" i_stop="47972" i_length="709"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="47971" e_stop="47707" e_length="265"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.996">
            <gDNA_intron_boundary i_start="47706" i_stop="46799" i_length="908"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="46798" e_stop="46531" e_length="268"/>
          </exon>
          <intron i_serial="3" don_prob="0.910" acc_prob="0.879">
            <gDNA_intron_boundary i_start="46530" i_stop="46460" i_length="71"/>
          </intron>
          <exon e_serial="4" e_score="0.992">
            <gDNA_exon_boundary e_start="46459" e_stop="45779" e_length="681"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48788" stop="48681"/>
              <exon start="47971" stop="47707"/>
              <exon start="46798" stop="46531"/>
              <exon start="46459" stop="46333"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543075" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48787" stop="48681"/>
              <exon start="47971" stop="47707"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303371" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46374" stop="45779"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543074" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GACAAACGGTTATGTTAGTCAGCACCAGGCTAGACTCCAAGCTGCAGTTGCTGCTGCTGCAATTTATGAGAAGTCCTTTGTTTATCCTTCTGCACCAACACTAAGCCG : GTCTCATGGACATGCTCTATTTCCTCCTTCCTATGGACCAGTCAGTTTTATCAGCGTGGACTCACAAAGAGAGAGTGCTGCAAATGAATGGTCACAGCAACATCAATATGCAAATATGCCTTTTGCTTACTATCCACAGAGCAGTTTTGGTCCTTTAGGATATCCTGGTGCTAACATGCCTGTTGGAGATGGTTCCCGGAGTAACCTTAGTACTTCAGATACTCAGCTCGAGGCCCATAGGATATTCTTACAGCAGCAGTGTGAG : GCTCTGCAAAACCAGCTCAAGCTTCTACAGAGTTCAAAGACACAGAAAGTAGCAGATGGTGCAAAAGTTTCTGAAAGCAAGGGAAAAGCAATTTCATTAGAGAATGCTCAAAATGGACAGGCTGAAGGTGCAGATTTTTAAGGAGTGATCATCTGTATATAAAGTGCAGTTGTAATCATCCAGTTAGAATGGCTGCTGAACAATGGAATTCACCGGAAGATCTGTTGGTTGTATTTTCTCTAGTGATCTGGATATCGTTGTATTGCAG : AGTTTCAATTTCACATCTTCATTTAGCGGTCCATTAGCAAACCACATCAACAGGTACAACAATTTTAGCAGAAGATATTATATGTTCAAGTAGGAAAGTGAGAGATGACGCCTGATTCATGCATTCAAGAAGACTCTGGATCTTCAGCCTTGCTTTCTCCATTCCAGGGTTGGTGCAAATACCGAGTGGGAGTAAGTTTCTTCCATTTTCAGGATAGCATTTCAGTATGAAGTATATGCTGAACCATCCGGAGTTGACACATGGGATTAGAAAATTAAGCTGTTTGATCTTGTGACCATTTCATCTCTAGCCTTGCATGCATAATAATAGTAGTGTTCATTCCTTGAACAGTTGAACTATTAACATACAACACACTTGTATTAGTGCTATCTGTATCATAAATCAGTGCCAATTTCAAACCAAAAACTCTGTCGGACATCAGACAGGCTGTTGAATTGGCCTCCTTAGTTCAGCATTGAGAGTTGCTGTAATGTGTACACTGTACAGGCATTGGACCAGTACTCCAGAAATCGTTTTCGTTTGGTTAGGGATATGCAAGGGAACTTGCCGCAAACTGATCCTTTGAGAAAGTCAATATTAGTACCTCATTTATTCTGCAGGTTCAGATATTTTATTTGTTGGAGCAATGTATAACTGGATGATTCATCCAGTTTGCACCCA</gDNA_template>
            <first_frame> D  K  R  L  C  *  S  A  P  G  *  T  P  S  C  S  C  C  C  C  N  L  *  E  V  L  C  L  S  F  C  T  N  T  K  P  :  V  S  W  T  C  S  I  S  S  F  L  W  T  S  Q  F  Y  Q  R  G  L  T  K  R  E  C  C  K  *  M  V  T  A  T  S  I  C  K  Y  A  F  C  L  L  S  T  E  Q  F  W  S  F  R  I  S  W  C  *  H  A  C  W  R  W  F  P  E  *  P  *  Y  F  R  Y  S  A  R  G  P  *  D  I  L  T  A  A  V  *   : G  S  A  K  P  A  Q  A  S  T  E  F  K  D  T  E  S  S  R  W  C  K  S  F  *  K  Q  G  K  S  N  F  I  R  E  C  S  K  W  T  G  *  R  C  R  F  L  R  S  D  H  L  Y  I  K  C  S  C  N  H  P  V  R  M  A  A  E  Q  W  N  S  P  E  D  L  L  V  V  F  S  L  V  I  W  I  S  L  Y  C  R :   V  S  I  S  H  L  H  L  A  V  H  *  Q  T  T  S  T  G  T  T  I  L  A  E  D  I  I  C  S  S  R  K  V  R  D  D  A  *  F  M  H  S  R  R  L  W  I  F  S  L  A  F  S  I  P  G  L  V  Q  I  P  S  G  S  K  F  L  P  F  S  G  *  H  F  S  M  K  Y  M  L  N  H  P  E  L  T  H  G  I  R  K  L  S  C  L  I  L  *  P  F  H  L  *  P  C  M  H  N  N  S  S  V  H  S  L  N  S  *  T  I  N  I  Q  H  T  C  I  S  A  I  C  I  I  N  Q  C  Q  F  Q  T  K  N  S  V  G  H  Q  T  G  C  *  I  G  L  L  S  S  A  L  R  V  A  V  M  C  T  L  Y  R  H  W  T  S  T  P  E  I  V  F  V  W  L  G  I  C  K  G  T  C  R  K  L  I  L  *  E  S  Q  Y  *  Y  L  I  Y  S  A  G  S  D  I  L  F  V  G  A  M  Y  N  W  M  I  H  P  V  C  T   </first_frame>
            <second_frame>  T  N  G  Y  V  S  Q  H  Q  A  R  L  Q  A  A  V  A  A  A  A  I  Y  E  K  S  F  V  Y  P  S  A  P  T  L  S  R :   S  H  G  H  A  L  F  P  P  S  Y  G  P  V  S  F  I  S  V  D  S  Q  R  E  S  A  A  N  E  W  S  Q  Q  H  Q  Y  A  N  M  P  F  A  Y  Y  P  Q  S  S  F  G  P  L  G  Y  P  G  A  N  M  P  V  G  D  G  S  R  S  N  L  S  T  S  D  T  Q  L  E  A  H  R  I  F  L  Q  Q  Q  C  E  :  A  L  Q  N  Q  L  K  L  L  Q  S  S  K  T  Q  K  V  A  D  G  A  K  V  S  E  S  K  G  K  A  I  S  L  E  N  A  Q  N  G  Q  A  E  G  A  D  F  *  G  V  I  I  C  I  *  S  A  V  V  I  I  Q  L  E  W  L  L  N  N  G  I  H  R  K  I  C  W  L  Y  F  L  *  *  S  G  Y  R  C  I  A   : E  F  Q  F  H  I  F  I  *  R  S  I  S  K  P  H  Q  Q  V  Q  Q  F  *  Q  K  I  L  Y  V  Q  V  G  K  *  E  M  T  P  D  S  C  I  Q  E  D  S  G  S  S  A  L  L  S  P  F  Q  G  W  C  K  Y  R  V  G  V  S  F  F  H  F  Q  D  S  I  S  V  *  S  I  C  *  T  I  R  S  *  H  M  G  L  E  N  *  A  V  *  S  C  D  H  F  I  S  S  L  A  C  I  I  I  V  V  F  I  P  *  T  V  E  L  L  T  Y  N  T  L  V  L  V  L  S  V  S  *  I  S  A  N  F  K  P  K  T  L  S  D  I  R  Q  A  V  E  L  A  S  L  V  Q  H  *  E  L  L  *  C  V  H  C  T  G  I  G  P  V  L  Q  K  S  F  S  F  G  *  G  Y  A  R  E  L  A  A  N  *  S  F  E  K  V  N  I  S  T  S  F  I  L  Q  V  Q  I  F  Y  L  L  E  Q  C  I  T  G  *  F  I  Q  F  A  P  </second_frame>
            <third_frame>   Q  T  V  M  L  V  S  T  R  L  D  S  K  L  Q  L  L  L  L  Q  F  M  R  S  P  L  F  I  L  L  H  Q  H  *  A   : G  L  M  D  M  L  Y  F  L  L  P  M  D  Q  S  V  L  S  A  W  T  H  K  E  R  V  L  Q  M  N  G  H  S  N  I  N  M  Q  I  C  L  L  L  T  I  H  R  A  V  L  V  L  *  D  I  L  V  L  T  C  L  L  E  M  V  P  G  V  T  L  V  L  Q  I  L  S  S  R  P  I  G  Y  S  Y  S  S  S  V  R :   L  C  K  T  S  S  S  F  Y  R  V  Q  R  H  R  K  *  Q  M  V  Q  K  F  L  K  A  R  E  K  Q  F  H  *  R  M  L  K  M  D  R  L  K  V  Q  I  F  K  E  *  S  S  V  Y  K  V  Q  L  *  S  S  S  *  N  G  C  *  T  M  E  F  T  G  R  S  V  G  C  I  F  S  S  D  L  D  I  V  V  L  Q  :  S  F  N  F  T  S  S  F  S  G  P  L  A  N  H  I  N  R  Y  N  N  F  S  R  R  Y  Y  M  F  K  *  E  S  E  R  *  R  L  I  H  A  F  K  K  T  L  D  L  Q  P  C  F  L  H  S  R  V  G  A  N  T  E  W  E  *  V  S  S  I  F  R  I  A  F  Q  Y  E  V  Y  A  E  P  S  G  V  D  T  W  D  *  K  I  K  L  F  D  L  V  T  I  S  S  L  A  L  H  A  *  *  *  *  C  S  F  L  E  Q  L  N  Y  *  H  T  T  H  L  Y  *  C  Y  L  Y  H  K  S  V  P  I  S  N  Q  K  L  C  R  T  S  D  R  L  L  N  W  P  P  *  F  S  I  E  S  C  C  N  V  Y  T  V  Q  A  L  D  Q  Y  S  R  N  R  F  R  L  V  R  D  M  Q  G  N  L  P  Q  T  D  P  L  R  K  S  I  L  V  P  H  L  F  C  R  F  R  Y  F  I  C  W  S  N  V  *  L  D  D  S  S  S  L  H  P </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0113N10.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="48787" stop="48681"/>
                    <exon start="47971" stop="47707"/>
                    <exon start="46798" stop="46658"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>510</number_coding_nucleotides>
                  <number_encoded_amino_acids>170</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TNGYVSQHQARLQAAVAAAAIYEKSFVYPSAPTLSRSHGHALFPPSYGPVSFISVDSQRESAANEWSQQHQYANMPFAYYPQSSFGPLGYPGANMPVGDGSRSNLSTSDTQLEAHRIFLQQQCEALQNQLKLLQSSKTQKVADGAKVSESKGKAISLENAQNGQAEGADF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="61701" PGL_stop="61110"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="61701" e_stop="61110"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.931"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.931">
            <gDNA_exon_boundary e_start="61701" e_stop="61110" e_length="592"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61701" stop="61110"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E620481" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGGATACATGCATTTGTTTCTCAACAATGCTCGAGTCGTTAGTCCAAATATCTGCACTAAAAGTGCTTCCATCAGATGCCATGGCATTGATCAAGTCCTGGAAGGTGCCACTTTGCCATCTGAACATAATAATACCAGTCTTCCTGTGCCTCCACCTTGTGATCATAACATTACGATCCCGCCTTTTGGGCTGGTTGCACCACCTCCTGTAATGTCACCACCATCTGCAGCACAGCCAGTAAGTAGCAACATTAGTCCGATTCCATCATCAACTCCACCTCTGAAATCTGCAGTATCTTTAAGTAAAACCGGAATAACTGGGCTTATTTGGTTGCTGATGGCCGTGAAGTTATCTCTTTGATCGAAACTTAGGCTTCTAGCTGAATCAAAGCAAGAGAGCAAGCTTGTATATGGAGGCCAAACGGGGATATACTGATATATTACTGAATTTGTATTATTGCATATGGTACTTCTACTCTATTTAAACTTTGTTGTTTGTTTTGCCACTTTCTATAGATGCTCTAAATGTATCTTATGTTTTGAACTAGATAAAGTCCACAAACAACTTTTTGTACTAAAAGGGTTTGAAGTA</gDNA_template>
            <first_frame> W  I  H  A  F  V  S  Q  Q  C  S  S  R  *  S  K  Y  L  H  *  K  C  F  H  Q  M  P  W  H  *  S  S  P  G  R  C  H  F  A  I  *  T  *  *  Y  Q  S  S  C  A  S  T  L  *  S  *  H  Y  D  P  A  F  W  A  G  C  T  T  S  C  N  V  T  T  I  C  S  T  A  S  K  *  Q  H  *  S  D  S  I  I  N  S  T  S  E  I  C  S  I  F  K  *  N  R  N  N  W  A  Y  L  V  A  D  G  R  E  V  I  S  L  I  E  T  *  A  S  S  *  I  K  A  R  E  Q  A  C  I  W  R  P  N  G  D  I  L  I  Y  Y  *  I  C  I  I  A  Y  G  T  S  T  L  F  K  L  C  C  L  F  C  H  F  L  *  M  L  *  M  Y  L  M  F  *  T  R  *  S  P  Q  T  T  F  C  T  K  R  V  *  S  </first_frame>
            <second_frame>  G  Y  M  H  L  F  L  N  N  A  R  V  V  S  P  N  I  C  T  K  S  A  S  I  R  C  H  G  I  D  Q  V  L  E  G  A  T  L  P  S  E  H  N  N  T  S  L  P  V  P  P  P  C  D  H  N  I  T  I  P  P  F  G  L  V  A  P  P  P  V  M  S  P  P  S  A  A  Q  P  V  S  S  N  I  S  P  I  P  S  S  T  P  P  L  K  S  A  V  S  L  S  K  T  G  I  T  G  L  I  W  L  L  M  A  V  K  L  S  L  *  S  K  L  R  L  L  A  E  S  K  Q  E  S  K  L  V  Y  G  G  Q  T  G  I  Y  *  Y  I  T  E  F  V  L  L  H  M  V  L  L  L  Y  L  N  F  V  V  C  F  A  T  F  Y  R  C  S  K  C  I  L  C  F  E  L  D  K  V  H  K  Q  L  F  V  L  K  G  F  E  V </second_frame>
            <third_frame>   D  T  C  I  C  F  S  T  M  L  E  S  L  V  Q  I  S  A  L  K  V  L  P  S  D  A  M  A  L  I  K  S  W  K  V  P  L  C  H  L  N  I  I  I  P  V  F  L  C  L  H  L  V  I  I  T  L  R  S  R  L  L  G  W  L  H  H  L  L  *  C  H  H  H  L  Q  H  S  Q  *  V  A  T  L  V  R  F  H  H  Q  L  H  L  *  N  L  Q  Y  L  *  V  K  P  E  *  L  G  L  F  G  C  *  W  P  *  S  Y  L  F  D  R  N  L  G  F  *  L  N  Q  S  K  R  A  S  L  Y  M  E  A  K  R  G  Y  T  D  I  L  L  N  L  Y  Y  C  I  W  Y  F  Y  S  I  *  T  L  L  F  V  L  P  L  S  I  D  A  L  N  V  S  Y  V  L  N  *  I  K  S  T  N  N  F  L  Y  *  K  G  L  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0113N10.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="61700" stop="61341"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>357</number_coding_nucleotides>
                  <number_encoded_amino_acids>119</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GYMHLFLNNARVVSPNICTKSASIRCHGIDQVLEGATLPSEHNNTSLPVPPPCDHNITIPPFGLVAPPPVMSPPSAAQPVSSNISPIPSSTPPLKSAVSLSKTGITGLIWLLMAVKLSL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="67129" PGL_stop="63356"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="67129" e_stop="67087"/>
            <exon e_start="66618" e_stop="66515"/>
            <exon e_start="66359" e_stop="66284"/>
            <exon e_start="64464" e_stop="64381"/>
            <exon e_start="64293" e_stop="63356"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.979" acc_prob="0.998" e_score="0.953"/>
          <exon-intron don_prob="0.970" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.966" acc_prob="0.971" e_score="1.000"/>
          <exon-intron don_prob="0.925" acc_prob="0.999" e_score="0.988"/>
          <exon-only e_score="0.986"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.953">
            <gDNA_exon_boundary e_start="67129" e_stop="67087" e_length="43"/>
          </exon>
          <intron i_serial="1" don_prob="0.979" acc_prob="0.998">
            <gDNA_intron_boundary i_start="67086" i_stop="66619" i_length="468"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="66618" e_stop="66515" e_length="104"/>
          </exon>
          <intron i_serial="2" don_prob="0.970" acc_prob="0.997">
            <gDNA_intron_boundary i_start="66514" i_stop="66360" i_length="155"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="66359" e_stop="66284" e_length="76"/>
          </exon>
          <intron i_serial="3" don_prob="0.966" acc_prob="0.971">
            <gDNA_intron_boundary i_start="66283" i_stop="64465" i_length="1819"/>
          </intron>
          <exon e_serial="4" e_score="0.988">
            <gDNA_exon_boundary e_start="64464" e_stop="64381" e_length="84"/>
          </exon>
          <intron i_serial="4" don_prob="0.925" acc_prob="0.999">
            <gDNA_intron_boundary i_start="64380" i_stop="64294" i_length="87"/>
          </intron>
          <exon e_serial="5" e_score="0.986">
            <gDNA_exon_boundary e_start="64293" e_stop="63356" e_length="938"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67129" stop="67087"/>
              <exon start="66618" stop="66515"/>
              <exon start="66359" stop="66284"/>
              <exon start="64464" stop="64381"/>
              <exon start="64293" stop="63884"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547101" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67128" stop="67087"/>
              <exon start="66618" stop="66515"/>
              <exon start="66359" stop="66326"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360742" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64059" stop="63356"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549480" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTCAGATTGATCTGCTATCTTTTTTTAATCTCGATCCATGTCG : GTTAAAACAGTGCAAGTGAACAATGTTTCTTTGGGTGCTAAAGAGCAAGATATCAAGGAGTTCTTCTCCTTCTCTGGGGATATTGAATATTTAGAGATGAAAGG : TGAGAGTGAGCGATCACAAGTTGCTTATGTAACATTCAAGGATCCTCAGAGTGCAGAGACCGCAGTTCTTCTTTCA : GGAGCTACAATTGTTGATCAGTCCATCTCAATAGTCCTAGCACCCGAGTACAAGCTCCCACCTACAGCTTCAGTATCACCAGTT : CCAAATGAAACCACCACTGCACCCGCTGCTGGATCTGCTATTCAAAAGGCAGAGGATGTAGTCAGCAGCATGTTGGCAAAGGGCTTTATCTTGGGCAAGGACGCAGTTGGCAAAGCCAAGGCACTAGACGAGAGACACAAGATCACATCCACTACCTCAGCCACAGTTGCTTCTATAGACCAAAAATATGGCCTTAGTGAGAAAATCACTACAGGAGCGACGATTGTGAACCACAAAGTGAAAGAAATGGACCAGAAGTTCCAAGTCTCAGAAAAGTCAAAATCTGCTTTTGCAGCTGCTGAACAGACAGTTAGCAATGCTGGATCTGCCATCATGAAGAACAGATATGCTTTGACCGGTGTAACTTGGGCTGCAGGTGCATTAAGTCGAGTCACTAAGGCTGCCGGGGAAGTGGGACAGAAGACAAAGGAAAAACTGGCTGAAGAAGAAAGAAGAACTTTTACTAAAGGTCATGCACAAGAAAATACTGCAACTTCAACAAAAGGTAGTGTGCAACAACAAGCTGCAGATTCCGCTAAAGGTGATGTCCAAGAACTCACTCCAGCTTCTGCTAAAGGTGATGTGCAAGAACTTGCTGCAGCTTCTGCTAAAGGTGATGTGCAAGAACTTGCTACAGCTTCTGCTAAAGGTGATGTACACGAACTTGCTGCAGCTTCTGCCAAAAGTGATGTGCAAGAGCATGCTGCAACTTCTGCTAAAAGTGATGTGCAAGAAGTTGCAGCAACTTCTGCAAAACAAGAACATACCGAGACTCAAACCGGAGTTGAGGAATCCACCAATCCCTCTCTTCCACCAAAAGCTTAATCCAACATTATCTTGAAAGTAAATGCGTGATTTACGCTAGTTTGTTATTCGAATTTGCACAGGTCATTATGTATCAACTATGGTATTTATACATGGAATTTTATTTCTTAGGT</gDNA_template>
            <first_frame> L  R  L  I  C  Y  L  F  L  I  S  I  H  V   : G  *  N  S  A  S  E  Q  C  F  F  G  C  *  R  A  R  Y  Q  G  V  L  L  L  L  W  G  Y  *  I  F  R  D  E  R  :  *  E  *  A  I  T  S  C  L  C  N  I  Q  G  S  S  E  C  R  D  R  S  S  S  F   : R  S  Y  N  C  *  S  V  H  L  N  S  P  S  T  R  V  Q  A  P  T  Y  S  F  S  I  T  S   : S  K  *  N  H  H  C  T  R  C  W  I  C  Y  S  K  G  R  G  C  S  Q  Q  H  V  G  K  G  L  Y  L  G  Q  G  R  S  W  Q  S  Q  G  T  R  R  E  T  Q  D  H  I  H  Y  L  S  H  S  C  F  Y  R  P  K  I  W  P  *  *  E  N  H  Y  R  S  D  D  C  E  P  Q  S  E  R  N  G  P  E  V  P  S  L  R  K  V  K  I  C  F  C  S  C  *  T  D  S  *  Q  C  W  I  C  H  H  E  E  Q  I  C  F  D  R  C  N  L  G  C  R  C  I  K  S  S  H  *  G  C  R  G  S  G  T  E  D  K  G  K  T  G  *  R  R  K  K  N  F  Y  *  R  S  C  T  R  K  Y  C  N  F  N  K  R  *  C  A  T  T  S  C  R  F  R  *  R  *  C  P  R  T  H  S  S  F  C  *  R  *  C  A  R  T  C  C  S  F  C  *  R  *  C  A  R  T  C  Y  S  F  C  *  R  *  C  T  R  T  C  C  S  F  C  Q  K  *  C  A  R  A  C  C  N  F  C  *  K  *  C  A  R  S  C  S  N  F  C  K  T  R  T  Y  R  D  S  N  R  S  *  G  I  H  Q  S  L  S  S  T  K  S  L  I  Q  H  Y  L  E  S  K  C  V  I  Y  A  S  L  L  F  E  F  A  Q  V  I  M  Y  Q  L  W  Y  L  Y  M  E  F  Y  F  L  G </first_frame>
            <second_frame>  S  D  *  S  A  I  F  F  *  S  R  S  M  S  :  V  K  T  V  Q  V  N  N  V  S  L  G  A  K  E  Q  D  I  K  E  F  F  S  F  S  G  D  I  E  Y  L  E  M  K  G :   E  S  E  R  S  Q  V  A  Y  V  T  F  K  D  P  Q  S  A  E  T  A  V  L  L  S  :  G  A  T  I  V  D  Q  S  I  S  I  V  L  A  P  E  Y  K  L  P  P  T  A  S  V  S  P  V  :  P  N  E  T  T  T  A  P  A  A  G  S  A  I  Q  K  A  E  D  V  V  S  S  M  L  A  K  G  F  I  L  G  K  D  A  V  G  K  A  K  A  L  D  E  R  H  K  I  T  S  T  T  S  A  T  V  A  S  I  D  Q  K  Y  G  L  S  E  K  I  T  T  G  A  T  I  V  N  H  K  V  K  E  M  D  Q  K  F  Q  V  S  E  K  S  K  S  A  F  A  A  A  E  Q  T  V  S  N  A  G  S  A  I  M  K  N  R  Y  A  L  T  G  V  T  W  A  A  G  A  L  S  R  V  T  K  A  A  G  E  V  G  Q  K  T  K  E  K  L  A  E  E  E  R  R  T  F  T  K  G  H  A  Q  E  N  T  A  T  S  T  K  G  S  V  Q  Q  Q  A  A  D  S  A  K  G  D  V  Q  E  L  T  P  A  S  A  K  G  D  V  Q  E  L  A  A  A  S  A  K  G  D  V  Q  E  L  A  T  A  S  A  K  G  D  V  H  E  L  A  A  A  S  A  K  S  D  V  Q  E  H  A  A  T  S  A  K  S  D  V  Q  E  V  A  A  T  S  A  K  Q  E  H  T  E  T  Q  T  G  V  E  E  S  T  N  P  S  L  P  P  K  A  *  S  N  I  I  L  K  V  N  A  *  F  T  L  V  C  Y  S  N  L  H  R  S  L  C  I  N  Y  G  I  Y  T  W  N  F  I  S  *   </second_frame>
            <third_frame>   Q  I  D  L  L  S  F  F  N  L  D  P  C  R :   L  K  Q  C  K  *  T  M  F  L  W  V  L  K  S  K  I  S  R  S  S  S  P  S  L  G  I  L  N  I  *  R  *  K   : V  R  V  S  D  H  K  L  L  M  *  H  S  R  I  L  R  V  Q  R  P  Q  F  F  F  Q :   E  L  Q  L  L  I  S  P  S  Q  *  S  *  H  P  S  T  S  S  H  L  Q  L  Q  Y  H  Q  F :   Q  M  K  P  P  L  H  P  L  L  D  L  L  F  K  R  Q  R  M  *  S  A  A  C  W  Q  R  A  L  S  W  A  R  T  Q  L  A  K  P  R  H  *  T  R  D  T  R  S  H  P  L  P  Q  P  Q  L  L  L  *  T  K  N  M  A  L  V  R  K  S  L  Q  E  R  R  L  *  T  T  K  *  K  K  W  T  R  S  S  K  S  Q  K  S  Q  N  L  L  L  Q  L  L  N  R  Q  L  A  M  L  D  L  P  S  *  R  T  D  M  L  *  P  V  *  L  G  L  Q  V  H  *  V  E  S  L  R  L  P  G  K  W  D  R  R  Q  R  K  N  W  L  K  K  K  E  E  L  L  L  K  V  M  H  K  K  I  L  Q  L  Q  Q  K  V  V  C  N  N  K  L  Q  I  P  L  K  V  M  S  K  N  S  L  Q  L  L  L  K  V  M  C  K  N  L  L  Q  L  L  L  K  V  M  C  K  N  L  L  Q  L  L  L  K  V  M  Y  T  N  L  L  Q  L  L  P  K  V  M  C  K  S  M  L  Q  L  L  L  K  V  M  C  K  K  L  Q  Q  L  L  Q  N  K  N  I  P  R  L  K  P  E  L  R  N  P  P  I  P  L  F  H  Q  K  L  N  P  T  L  S  *  K  *  M  R  D  L  R  *  F  V  I  R  I  C  T  G  H  Y  V  S  T  M  V  F  I  H  G  I  L  F  L  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0113N10.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="67101" stop="67087"/>
                    <exon start="66618" stop="66515"/>
                    <exon start="66359" stop="66284"/>
                    <exon start="64464" stop="64381"/>
                    <exon start="64293" stop="63469"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1101</number_coding_nucleotides>
                  <number_encoded_amino_acids>367</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SRSMSVKTVQVNNVSLGAKEQDIKEFFSFSGDIEYLEMKGESERSQVAYVTFKDPQSAETAVLLSGATIVDQSISIVLAPEYKLPPTASVSPVPNETTTAPAAGSAIQKAEDVVSSMLAKGFILGKDAVGKAKALDERHKITSTTSATVASIDQKYGLSEKITTGATIVNHKVKEMDQKFQVSEKSKSAFAAAEQTVSNAGSAIMKNRYALTGVTWAAGALSRVTKAAGEVGQKTKEKLAEEERRTFTKGHAQENTATSTKGSVQQQAADSAKGDVQELTPASAKGDVQELAAASAKGDVQELATASAKGDVHELAAASAKSDVQEHAATSAKSDVQEVAATSAKQEHTETQTGVEESTNPSLPPKA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="73734" PGL_stop="73463"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="73734" e_stop="73463"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.978"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.978">
            <gDNA_exon_boundary e_start="73734" e_stop="73463" e_length="272"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73734" stop="73463"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312169" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGTTTTGCAAAGTTGGGTTAAGGGCTTGTAATGTTTTCTCATGGGATAACAGTATTCCAACAGGAAAAAAAGGTCTGGTTTACCCCACCACAAAAAAAAAAAAAAGAAGAGAAAAATAAGTAATATCAATATTTTCGTTTTACAATGTGTTAGTTGCATGTGCTGAAATATTTACTAAATTGTAACCAAGCGAAGACATTTTTGTTGGAAAAAGTTGATATATACAAATCACAATACGAGTATTACAATCTCACATGACTCCATTCCCAACT</gDNA_template>
            <first_frame> C  F  A  K  L  G  *  G  L  V  M  F  S  H  G  I  T  V  F  Q  Q  E  K  K  V  W  F  T  P  P  Q  K  K  K  K  E  E  K  N  K  *  Y  Q  Y  F  R  F  T  M  C  *  L  H  V  L  K  Y  L  L  N  C  N  Q  A  K  T  F  L  L  E  K  V  D  I  Y  K  S  Q  Y  E  Y  Y  N  L  T  *  L  H  S  Q   </first_frame>
            <second_frame>  V  L  Q  S  W  V  K  G  L  *  C  F  L  M  G  *  Q  Y  S  N  R  K  K  R  S  G  L  P  H  H  K  K  K  K  K  K  R  K  I  S  N  I  N  I  F  V  L  Q  C  V  S  C  M  C  *  N  I  Y  *  I  V  T  K  R  R  H  F  C  W  K  K  L  I  Y  T  N  H  N  T  S  I  T  I  S  H  D  S  I  P  N  </second_frame>
            <third_frame>   F  C  K  V  G  L  R  A  C  N  V  F  S  W  D  N  S  I  P  T  G  K  K  G  L  V  Y  P  T  T  K  K  K  K  R  R  E  K  *  V  I  S  I  F  S  F  Y  N  V  L  V  A  C  A  E  I  F  T  K  L  *  P  S  E  D  I  F  V  G  K  S  *  Y  I  Q  I  T  I  R  V  L  Q  S  H  M  T  P  F  P  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06SLm0113N10.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="-" PGL_start="78177" PGL_stop="76974"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="78177" e_stop="76974"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="78177" e_stop="76974" e_length="1204"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78177" stop="77479"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E389906" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78176" stop="77899"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233363" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77673" stop="76974"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390051" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77671" stop="76996"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550467" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCGTTTTGGTTACGTACTTGCATCGAAGAAAGTTTCAAGCTTTATTCAAGATTCACTCATCAATCATGCCCAAGAAAATGGTATTGATTTAGTGCCAATCGATCTTGACAAACCATTAATCGAACAAGGTCCTTTTGATTGTATATTCCACAAGCTATATGGTCCAGAATGGAGGAAGCAGTTAGAAGAATTCGCGCTTCAGAACCCAACCGCCATTATAGTAGATCCAATCGACGCCATTGAAAAGCTTCATAATCGGCTCACAATGCTTGACGTCGTTAACGAATTGAAAATCGCCGGAGACAGCGAAACTATCGGAATCCCTATTCAGATTTTCGTTGGAGAAAATTCAGAATCCCTTTTAGACGCTATTACTAGTCAAGGGTTACATTTCCCTGTCATTGCTAAGCCGTTGATTGCGAATGGCTCTGCGGATTCTCATCAAATGTCTTTGGTTTTGAAGCCGGAAGGGTTACAAGGGCTGAAACCCCCAATTGTTTTACAGGAATTTGTGAATCATGGAGGCGTTATTTTCAAGGTTTATGTAGCTGGGGAACATGTTAAATGTGTGAAAAGGAGGTCATTGCCTGACATTCCGGAGGAGAAATTGGGAATGTTAGAGAATCTGATATCGTTTTCGCAGATATCTAATTTAACTGCTCAAGATCAGAATGATGATACTTTTGCTGAACTGATTGAGAAGGCGGTGATGCCTCCGTCAAGATTTGTGACAGATGTAGCCAATCAGTTGAGGGATGCTTTGAAGTTGCATCTTTTTAACTTTGATATGATTAGAGATGAAAAAGTTGGGAATCGATATCTTGTTATTGATATCAATTATTTCCCTGGCTATGCTAAAATCCCAAACTATGAGACTATGATGACTGCATTTTTCCTAGATATTGCACGCGAGAAGCTAAACAACGAGTCCCGTTAGGCCTCTTATGAGATCATTTTAGCCCTGTATACTGGTTATACAGTTAAGCTCTTTTACTGTTTTACCTCAGCTGGCAGATGATGCTGAAGTAAATGTGAATCAAAAGAGGCTAACTGCTCTTATTTCGTAAAACTGTAAGGTAAAAGTCTACTGAGTTTTGGAGCAATTGATGCGTTTCTCTTTCATTCTCCTTTTTTCTTTAGTTTAGTTAATGAGATGTGGAATAATTTGGAACCGGATGATAATACTTCAAAGTTTTTACTCTT</gDNA_template>
            <first_frame> F  V  L  V  T  Y  L  H  R  R  K  F  Q  A  L  F  K  I  H  S  S  I  M  P  K  K  M  V  L  I  *  C  Q  S  I  L  T  N  H  *  S  N  K  V  L  L  I  V  Y  S  T  S  Y  M  V  Q  N  G  G  S  S  *  K  N  S  R  F  R  T  Q  P  P  L  *  *  I  Q  S  T  P  L  K  S  F  I  I  G  S  Q  C  L  T  S  L  T  N  *  K  S  P  E  T  A  K  L  S  E  S  L  F  R  F  S  L  E  K  I  Q  N  P  F  *  T  L  L  L  V  K  G  Y  I  S  L  S  L  L  S  R  *  L  R  M  A  L  R  I  L  I  K  C  L  W  F  *  S  R  K  G  Y  K  G  *  N  P  Q  L  F  Y  R  N  L  *  I  M  E  A  L  F  S  R  F  M  *  L  G  N  M  L  N  V  *  K  G  G  H  C  L  T  F  R  R  R  N  W  E  C  *  R  I  *  Y  R  F  R  R  Y  L  I  *  L  L  K  I  R  M  M  I  L  L  L  N  *  L  R  R  R  *  C  L  R  Q  D  L  *  Q  M  *  P  I  S  *  G  M  L  *  S  C  I  F  L  T  L  I  *  L  E  M  K  K  L  G  I  D  I  L  L  L  I  S  I  I  S  L  A  M  L  K  S  Q  T  M  R  L  *  *  L  H  F  S  *  I  L  H  A  R  S  *  T  T  S  P  V  R  P  L  M  R  S  F  *  P  C  I  L  V  I  Q  L  S  S  F  T  V  L  P  Q  L  A  D  D  A  E  V  N  V  N  Q  K  R  L  T  A  L  I  S  *  N  C  K  V  K  V  Y  *  V  L  E  Q  L  M  R  F  S  F  I  L  L  F  S  L  V  *  L  M  R  C  G  I  I  W  N  R  M  I  I  L  Q  S  F  Y  S  </first_frame>
            <second_frame>  S  F  W  L  R  T  C  I  E  E  S  F  K  L  Y  S  R  F  T  H  Q  S  C  P  R  K  W  Y  *  F  S  A  N  R  S  *  Q  T  I  N  R  T  R  S  F  *  L  Y  I  P  Q  A  I  W  S  R  M  E  E  A  V  R  R  I  R  A  S  E  P  N  R  H  Y  S  R  S  N  R  R  H  *  K  A  S  *  S  A  H  N  A  *  R  R  *  R  I  E  N  R  R  R  Q  R  N  Y  R  N  P  Y  S  D  F  R  W  R  K  F  R  I  P  F  R  R  Y  Y  *  S  R  V  T  F  P  C  H  C  *  A  V  D  C  E  W  L  C  G  F  S  S  N  V  F  G  F  E  A  G  R  V  T  R  A  E  T  P  N  C  F  T  G  I  C  E  S  W  R  R  Y  F  Q  G  L  C  S  W  G  T  C  *  M  C  E  K  E  V  I  A  *  H  S  G  G  E  I  G  N  V  R  E  S  D  I  V  F  A  D  I  *  F  N  C  S  R  S  E  *  *  Y  F  C  *  T  D  *  E  G  G  D  A  S  V  K  I  C  D  R  C  S  Q  S  V  E  G  C  F  E  V  A  S  F  *  L  *  Y  D  *  R  *  K  S  W  E  S  I  S  C  Y  *  Y  Q  L  F  P  W  L  C  *  N  P  K  L  *  D  Y  D  D  C  I  F  P  R  Y  C  T  R  E  A  K  Q  R  V  P  L  G  L  L  *  D  H  F  S  P  V  Y  W  L  Y  S  *  A  L  L  L  F  Y  L  S  W  Q  M  M  L  K  *  M  *  I  K  R  G  *  L  L  L  F  R  K  T  V  R  *  K  S  T  E  F  W  S  N  *  C  V  S  L  S  F  S  F  F  L  *  F  S  *  *  D  V  E  *  F  G  T  G  *  *  Y  F  K  V  F  T  L </second_frame>
            <third_frame>   R  F  G  Y  V  L  A  S  K  K  V  S  S  F  I  Q  D  S  L  I  N  H  A  Q  E  N  G  I  D  L  V  P  I  D  L  D  K  P  L  I  E  Q  G  P  F  D  C  I  F  H  K  L  Y  G  P  E  W  R  K  Q  L  E  E  F  A  L  Q  N  P  T  A  I  I  V  D  P  I  D  A  I  E  K  L  H  N  R  L  T  M  L  D  V  V  N  E  L  K  I  A  G  D  S  E  T  I  G  I  P  I  Q  I  F  V  G  E  N  S  E  S  L  L  D  A  I  T  S  Q  G  L  H  F  P  V  I  A  K  P  L  I  A  N  G  S  A  D  S  H  Q  M  S  L  V  L  K  P  E  G  L  Q  G  L  K  P  P  I  V  L  Q  E  F  V  N  H  G  G  V  I  F  K  V  Y  V  A  G  E  H  V  K  C  V  K  R  R  S  L  P  D  I  P  E  E  K  L  G  M  L  E  N  L  I  S  F  S  Q  I  S  N  L  T  A  Q  D  Q  N  D  D  T  F  A  E  L  I  E  K  A  V  M  P  P  S  R  F  V  T  D  V  A  N  Q  L  R  D  A  L  K  L  H  L  F  N  F  D  M  I  R  D  E  K  V  G  N  R  Y  L  V  I  D  I  N  Y  F  P  G  Y  A  K  I  P  N  Y  E  T  M  M  T  A  F  F  L  D  I  A  R  E  K  L  N  N  E  S  R  *  A  S  Y  E  I  I  L  A  L  Y  T  G  Y  T  V  K  L  F  Y  C  F  T  S  A  G  R  *  C  *  S  K  C  E  S  K  E  A  N  C  S  Y  F  V  K  L  *  G  K  S  L  L  S  F  G  A  I  D  A  F  L  F  H  S  P  F  F  F  S  L  V  N  E  M  W  N  N  L  E  P  D  D  N  T  S  K  F  L  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0113N10.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="78175" stop="77240"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>933</number_coding_nucleotides>
                  <number_encoded_amino_acids>311</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RFGYVLASKKVSSFIQDSLINHAQENGIDLVPIDLDKPLIEQGPFDCIFHKLYGPEWRKQLEEFALQNPTAIIVDPIDAIEKLHNRLTMLDVVNELKIAGDSETIGIPIQIFVGENSESLLDAITSQGLHFPVIAKPLIANGSADSHQMSLVLKPEGLQGLKPPIVLQEFVNHGGVIFKVYVAGEHVKCVKRRSLPDIPEEKLGMLENLISFSQISNLTAQDQNDDTFAELIEKAVMPPSRFVTDVANQLRDALKLHLFNFDMIRDEKVGNRYLVIDINYFPGYAKIPNYETMMTAFFLDIAREKLNNESR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="+" PGL_start="86804" PGL_stop="87126"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="86804" e_stop="87126"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.916"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.916">
            <gDNA_exon_boundary e_start="86804" e_stop="87126" e_length="323"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86804" stop="87126"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393076" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86804" stop="87109"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393075" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAAAATGTATGTATATTGCATAATTATAAGTGTATAGCAAGAAGATATATGTTTTTCTCGCTTTATACAAAAACAGAAACACAATATATACACTTTTGTTGTATAAAGCTAGAAAAAATTGTATTTCACTGCAATTGTATAATTCACAATTGTATAATTCTTTGGCCTTTTTCTCTGCAATATTTGAAGTAAAATGTTTGTAAATTATATAATTAAGTGTATAACACGAAGATATACATTTTTGCATGTGTATATACAATTTTCTCTCACTTTATACAAAACAGAAACAGAAATTATACACTTCTGTGTATAAAGCGAGAGAG</gDNA_template>
            <first_frame> *  N  V  C  I  L  H  N  Y  K  C  I  A  R  R  Y  M  F  F  S  L  Y  T  K  T  E  T  Q  Y  I  H  F  C  C  I  K  L  E  K  I  V  F  H  C  N  C  I  I  H  N  C  I  I  L  W  P  F  S  L  Q  Y  L  K  *  N  V  C  K  L  Y  N  *  V  Y  N  T  K  I  Y  I  F  A  C  V  Y  T  I  F  S  H  F  I  Q  N  R  N  R  N  Y  T  L  L  C  I  K  R  E   </first_frame>
            <second_frame>  K  M  Y  V  Y  C  I  I  I  S  V  *  Q  E  D  I  C  F  S  R  F  I  Q  K  Q  K  H  N  I  Y  T  F  V  V  *  S  *  K  K  L  Y  F  T  A  I  V  *  F  T  I  V  *  F  F  G  L  F  L  C  N  I  *  S  K  M  F  V  N  Y  I  I  K  C  I  T  R  R  Y  T  F  L  H  V  Y  I  Q  F  S  L  T  L  Y  K  T  E  T  E  I  I  H  F  C  V  *  S  E  R  </second_frame>
            <third_frame>   K  C  M  Y  I  A  *  L  *  V  Y  S  K  K  I  Y  V  F  L  A  L  Y  K  N  R  N  T  I  Y  T  L  L  L  Y  K  A  R  K  N  C  I  S  L  Q  L  Y  N  S  Q  L  Y  N  S  L  A  F  F  S  A  I  F  E  V  K  C  L  *  I  I  *  L  S  V  *  H  E  D  I  H  F  C  M  C  I  Y  N  F  L  S  L  Y  T  K  Q  K  Q  K  L  Y  T  S  V  Y  K  A  R  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06SLm0113N10.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="+" PGL_start="87359" PGL_stop="91275"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="87359" e_stop="88875"/>
            <exon e_start="90668" e_stop="91275"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.984"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="87359" e_stop="88875" e_length="1517"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.999">
            <gDNA_intron_boundary i_start="88876" i_stop="90667" i_length="1792"/>
          </intron>
          <exon e_serial="2" e_score="0.984">
            <gDNA_exon_boundary e_start="90668" e_stop="91275" e_length="608"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87359" stop="87860"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313766" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87367" stop="87845"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331259" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87376" stop="88039"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539957" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87377" stop="87764"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288518" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87378" stop="88013"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E573453" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88000" stop="88875"/>
              <exon start="90668" stop="91227"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745914" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88163" stop="88754"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247604" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88679" stop="88875"/>
              <exon start="90668" stop="91275"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539954" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTTACAGTGGCATTTGCTATTTTTAAGGAGATAAGGTCCGATGAATTGACGACACACCACTCCGCTCCTCCCGTTTTCTTCCATTTTCGTAAATCAAGTATCGTAACACCATAATCTGATCTCTGTTATCTCCAATTTTGGGTCTTGAGATTTTGTTTCCTTTATGTGAGTTAACTTTAATCAACTGTTTCTTCACTTACTAATCTTGAATTCCCTAATTTCTGTACTCTTTCCTTTTCTGTAGTTGTTGTTTTTCCATCTGGGTTTGTTGGGTTTACTTTCTTTTCTTCTGTTTGTAATTAATGAGACCTAGGGTTTCTGAAGTGCATTGTGTTTGAGCAAGAGTTGGTCAATCTTGTGTGGTTACTTGTTGTACTATACTTTTTGAATTAGGGAATGGATGATTGTTGAAAGTTTAAATTGTACCCACTATAGGAAAAAAGTTGTTTTTTCTGTAACAATCAAGTGAAAAAGGTAGGATTTTTAGCTTCGAATTCCTTATTTTCAAGAGGGAGGTTTCTAATTTCTTTTTCCTTTCTGGACAATAAGTGTGTGTGGATTTTTGTGTTGGTTTGAGGTTCCTGCTTTCTCATTCTTTTGAGGTATAGCCGTCAGTGTGTAATCTTTTTGCTCATGGTTTGAGCTTTATGTTTTTGTATGCATATTACTCTATTTTTATCAGTTTTGGGAATTGAACATTTTGGGGTAGTCAGATCTGCTGTTTAAATGGATTTTACGGGTGAAGCTGGTTTTGCTGGAGGGAATGTGATCCCCGATTCCACAGCCGGGGTTGGTGGTTATGACAGTTGGGGTCCTAATTTTTCTGACCAGGCAGTTTGGGCTACTGAGGATGATTATAAAGCCTGGAACAGTGGTCCCTATTGTGAAACCCCTTCCAATTCCAGTCAGGATGGTAGGCATTCACAAAACCGGTCAGGCAGTGAGCCTCCCAACAAGAAGTCAAGGAATGTGCAGGATTCAGATGCTCGCATTATAGTCACCAGTAGCTCTAAAGCAATCGGAAAGATGTTCTTTAAAACGAAGTTGTGTTGTAAGTTCCGTGCCGGTGTCTGCCCCTATGTTACTAATTGTAACTTTGCTCATGGAATAGAGGAGCTTCGCAAACCACCACCTAATTGGCAAGAGATAGTAGCTGCACATGAAAATGAGCGGGGAGTAATGGTGGAACTGAGAGAAGAACACCAGATACCAATATTGAGCTCTCCTGATTTACGTGGAGAGTCTCAAAGGTCCGCTAAAGGGAGGCACTGCAAGAAGTTCTACACTGAAGAGGGATGTCCTTATGGAGATAGTTGCACTTTCCTTCATGATGAACAATCAAGGTCTAGAGAGAGTGTTGCAATAAGTGTGACTCCTACTGTTGGTGGATTTGGAAATAATGCTACTGGAGCAACCCAAAAACCTTCAAACTGGAAGACAAGAATTTGTAATAAGTGGGAGACTACTGGCTATTGCCCGTTTGGCAGCAAGTGTCATTTTGCTCATGGTGTGGCAG : AACTGAACAAGTTTGGTGGAGGACCTGCGGAAACAGATGGCAAAGATTATGTCTCTGTTCCTCCAGAATTAAAGCAGGGCGGGGTTCCATCAAGAGCAACAGAAAGTACAGTGCCCTCAACCATTCCAGCACTCCACACAGATGTTTATCATCTGGGGCAGGGTGTTCAGGTACAAAGGCCAACTGGCATAGCTGATAGACCTGGCCAGAGGTTCTTTCAAAAATGGAAAGGCCCGGATAAGATTAGTAAAATATATGGCGACTGGATTGATGACATCGAGTGAAGGAGTTGTCATAATTAGCTACTGATCTGTTTAGCTAGACACAAATAGCCGAGGTTAGCTTTCAGCCTTGCATTCAAAGGAATTTTACCCTAGTGTTTTTTCGCCCCTCCGAAACTTGTTGTATTAGAGCTACAAACTAGATAGCTGCTCGGGCAGTCGATGTTTAATCACTTTTCTGTATTACTCACAACTTGTTTGTAAGAATGATGATTGGCTATAATCTCTATACTTGAGCCTTTTGTCTTGCGTGGAGATATTCAAACATAATTTGTATTTGAACTTGTGACTTGTTGTTATACCCGATTTCACTTCCTATACAGCTTT</gDNA_template>
            <first_frame> I  Y  S  G  I  C  Y  F  *  G  D  K  V  R  *  I  D  D  T  P  L  R  S  S  R  F  L  P  F  S  *  I  K  Y  R  N  T  I  I  *  S  L  L  S  P  I  L  G  L  E  I  L  F  P  L  C  E  L  T  L  I  N  C  F  F  T  Y  *  S  *  I  P  *  F  L  Y  S  F  L  F  C  S  C  C  F  S  I  W  V  C  W  V  Y  F  L  F  F  C  L  *  L  M  R  P  R  V  S  E  V  H  C  V  *  A  R  V  G  Q  S  C  V  V  T  C  C  T  I  L  F  E  L  G  N  G  *  L  L  K  V  *  I  V  P  T  I  G  K  K  L  F  F  L  *  Q  S  S  E  K  G  R  I  F  S  F  E  F  L  I  F  K  R  E  V  S  N  F  F  F  L  S  G  Q  *  V  C  V  D  F  C  V  G  L  R  F  L  L  S  H  S  F  E  V  *  P  S  V  C  N  L  F  A  H  G  L  S  F  M  F  L  Y  A  Y  Y  S  I  F  I  S  F  G  N  *  T  F  W  G  S  Q  I  C  C  L  N  G  F  Y  G  *  S  W  F  C  W  R  E  C  D  P  R  F  H  S  R  G  W  W  L  *  Q  L  G  S  *  F  F  *  P  G  S  L  G  Y  *  G  *  L  *  S  L  E  Q  W  S  L  L  *  N  P  F  Q  F  Q  S  G  W  *  A  F  T  K  P  V  R  Q  *  A  S  Q  Q  E  V  K  E  C  A  G  F  R  C  S  H  Y  S  H  Q  *  L  *  S  N  R  K  D  V  L  *  N  E  V  V  L  *  V  P  C  R  C  L  P  L  C  Y  *  L  *  L  C  S  W  N  R  G  A  S  Q  T  T  T  *  L  A  R  D  S  S  C  T  *  K  *  A  G  S  N  G  G  T  E  R  R  T  P  D  T  N  I  E  L  S  *  F  T  W  R  V  S  K  V  R  *  R  E  A  L  Q  E  V  L  H  *  R  G  M  S  L  W  R  *  L  H  F  P  S  *  *  T  I  K  V  *  R  E  C  C  N  K  C  D  S  Y  C  W  W  I  W  K  *  C  Y  W  S  N  P  K  T  F  K  L  E  D  K  N  L  *  *  V  G  D  Y  W  L  L  P  V  W  Q  Q  V  S  F  C  S  W  C  G  R :   T  E  Q  V  W  W  R  T  C  G  N  R  W  Q  R  L  C  L  C  S  S  R  I  K  A  G  R  G  S  I  K  S  N  R  K  Y  S  A  L  N  H  S  S  T  P  H  R  C  L  S  S  G  A  G  C  S  G  T  K  A  N  W  H  S  *  *  T  W  P  E  V  L  S  K  M  E  R  P  G  *  D  *  *  N  I  W  R  L  D  *  *  H  R  V  K  E  L  S  *  L  A  T  D  L  F  S  *  T  Q  I  A  E  V  S  F  Q  P  C  I  Q  R  N  F  T  L  V  F  F  R  P  S  E  T  C  C  I  R  A  T  N  *  I  A  A  R  A  V  D  V  *  S  L  F  C  I  T  H  N  L  F  V  R  M  M  I  G  Y  N  L  Y  T  *  A  F  C  L  A  W  R  Y  S  N  I  I  C  I  *  T  C  D  L  L  L  Y  P  I  S  L  P  I  Q  L  </first_frame>
            <second_frame>  F  T  V  A  F  A  I  F  K  E  I  R  S  D  E  L  T  T  H  H  S  A  P  P  V  F  F  H  F  R  K  S  S  I  V  T  P  *  S  D  L  C  Y  L  Q  F  W  V  L  R  F  C  F  L  Y  V  S  *  L  *  S  T  V  S  S  L  T  N  L  E  F  P  N  F  C  T  L  S  F  S  V  V  V  V  F  P  S  G  F  V  G  F  T  F  F  S  S  V  C  N  *  *  D  L  G  F  L  K  C  I  V  F  E  Q  E  L  V  N  L  V  W  L  L  V  V  L  Y  F  L  N  *  G  M  D  D  C  *  K  F  K  L  Y  P  L  *  E  K  S  C  F  F  C  N  N  Q  V  K  K  V  G  F  L  A  S  N  S  L  F  S  R  G  R  F  L  I  S  F  S  F  L  D  N  K  C  V  W  I  F  V  L  V  *  G  S  C  F  L  I  L  L  R  Y  S  R  Q  C  V  I  F  L  L  M  V  *  A  L  C  F  C  M  H  I  T  L  F  L  S  V  L  G  I  E  H  F  G  V  V  R  S  A  V  *  M  D  F  T  G  E  A  G  F  A  G  G  N  V  I  P  D  S  T  A  G  V  G  G  Y  D  S  W  G  P  N  F  S  D  Q  A  V  W  A  T  E  D  D  Y  K  A  W  N  S  G  P  Y  C  E  T  P  S  N  S  S  Q  D  G  R  H  S  Q  N  R  S  G  S  E  P  P  N  K  K  S  R  N  V  Q  D  S  D  A  R  I  I  V  T  S  S  S  K  A  I  G  K  M  F  F  K  T  K  L  C  C  K  F  R  A  G  V  C  P  Y  V  T  N  C  N  F  A  H  G  I  E  E  L  R  K  P  P  P  N  W  Q  E  I  V  A  A  H  E  N  E  R  G  V  M  V  E  L  R  E  E  H  Q  I  P  I  L  S  S  P  D  L  R  G  E  S  Q  R  S  A  K  G  R  H  C  K  K  F  Y  T  E  E  G  C  P  Y  G  D  S  C  T  F  L  H  D  E  Q  S  R  S  R  E  S  V  A  I  S  V  T  P  T  V  G  G  F  G  N  N  A  T  G  A  T  Q  K  P  S  N  W  K  T  R  I  C  N  K  W  E  T  T  G  Y  C  P  F  G  S  K  C  H  F  A  H  G  V  A   : E  L  N  K  F  G  G  G  P  A  E  T  D  G  K  D  Y  V  S  V  P  P  E  L  K  Q  G  G  V  P  S  R  A  T  E  S  T  V  P  S  T  I  P  A  L  H  T  D  V  Y  H  L  G  Q  G  V  Q  V  Q  R  P  T  G  I  A  D  R  P  G  Q  R  F  F  Q  K  W  K  G  P  D  K  I  S  K  I  Y  G  D  W  I  D  D  I  E  *  R  S  C  H  N  *  L  L  I  C  L  A  R  H  K  *  P  R  L  A  F  S  L  A  F  K  G  I  L  P  *  C  F  F  A  P  P  K  L  V  V  L  E  L  Q  T  R  *  L  L  G  Q  S  M  F  N  H  F  S  V  L  L  T  T  C  L  *  E  *  *  L  A  I  I  S  I  L  E  P  F  V  L  R  G  D  I  Q  T  *  F  V  F  E  L  V  T  C  C  Y  T  R  F  H  F  L  Y  S  F </second_frame>
            <third_frame>   L  Q  W  H  L  L  F  L  R  R  *  G  P  M  N  *  R  H  T  T  P  L  L  P  F  S  S  I  F  V  N  Q  V  S  *  H  H  N  L  I  S  V  I  S  N  F  G  S  *  D  F  V  S  F  M  *  V  N  F  N  Q  L  F  L  H  L  L  I  L  N  S  L  I  S  V  L  F  P  F  L  *  L  L  F  F  H  L  G  L  L  G  L  L  S  F  L  L  F  V  I  N  E  T  *  G  F  *  S  A  L  C  L  S  K  S  W  S  I  L  C  G  Y  L  L  Y  Y  T  F  *  I  R  E  W  M  I  V  E  S  L  N  C  T  H  Y  R  K  K  V  V  F  S  V  T  I  K  *  K  R  *  D  F  *  L  R  I  P  Y  F  Q  E  G  G  F  *  F  L  F  P  F  W  T  I  S  V  C  G  F  L  C  W  F  E  V  P  A  F  S  F  F  *  G  I  A  V  S  V  *  S  F  C  S  W  F  E  L  Y  V  F  V  C  I  L  L  Y  F  Y  Q  F  W  E  L  N  I  L  G  *  S  D  L  L  F  K  W  I  L  R  V  K  L  V  L  L  E  G  M  *  S  P  I  P  Q  P  G  L  V  V  M  T  V  G  V  L  I  F  L  T  R  Q  F  G  L  L  R  M  I  I  K  P  G  T  V  V  P  I  V  K  P  L  P  I  P  V  R  M  V  G  I  H  K  T  G  Q  A  V  S  L  P  T  R  S  Q  G  M  C  R  I  Q  M  L  A  L  *  S  P  V  A  L  K  Q  S  E  R  C  S  L  K  R  S  C  V  V  S  S  V  P  V  S  A  P  M  L  L  I  V  T  L  L  M  E  *  R  S  F  A  N  H  H  L  I  G  K  R  *  *  L  H  M  K  M  S  G  E  *  W  W  N  *  E  K  N  T  R  Y  Q  Y  *  A  L  L  I  Y  V  E  S  L  K  G  P  L  K  G  G  T  A  R  S  S  T  L  K  R  D  V  L  M  E  I  V  A  L  S  F  M  M  N  N  Q  G  L  E  R  V  L  Q  *  V  *  L  L  L  L  V  D  L  E  I  M  L  L  E  Q  P  K  N  L  Q  T  G  R  Q  E  F  V  I  S  G  R  L  L  A  I  A  R  L  A  A  S  V  I  L  L  M  V  W  Q  :  N  *  T  S  L  V  E  D  L  R  K  Q  M  A  K  I  M  S  L  F  L  Q  N  *  S  R  A  G  F  H  Q  E  Q  Q  K  V  Q  C  P  Q  P  F  Q  H  S  T  Q  M  F  I  I  W  G  R  V  F  R  Y  K  G  Q  L  A  *  L  I  D  L  A  R  G  S  F  K  N  G  K  A  R  I  R  L  V  K  Y  M  A  T  G  L  M  T  S  S  E  G  V  V  I  I  S  Y  *  S  V  *  L  D  T  N  S  R  G  *  L  S  A  L  H  S  K  E  F  Y  P  S  V  F  S  P  L  R  N  L  L  Y  *  S  Y  K  L  D  S  C  S  G  S  R  C  L  I  T  F  L  Y  Y  S  Q  L  V  C  K  N  D  D  W  L  *  S  L  Y  L  S  L  L  S  C  V  E  I  F  K  H  N  L  Y  L  N  L  *  L  V  V  I  P  D  F  T  S  Y  T  A   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0113N10.1" strand="+"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="88086" stop="88875"/>
                    <exon start="90668" stop="90951"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1071</number_coding_nucleotides>
                  <number_encoded_amino_acids>357</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MDFTGEAGFAGGNVIPDSTAGVGGYDSWGPNFSDQAVWATEDDYKAWNSGPYCETPSNSSQDGRHSQNRSGSEPPNKKSRNVQDSDARIIVTSSSKAIGKMFFKTKLCCKFRAGVCPYVTNCNFAHGIEELRKPPPNWQEIVAAHENERGVMVELREEHQIPILSSPDLRGESQRSAKGRHCKKFYTEEGCPYGDSCTFLHDEQSRSRESVAISVTPTVGGFGNNATGATQKPSNWKTRICNKWETTGYCPFGSKCHFAHGVAELNKFGGGPAETDGKDYVSVPPELKQGGVPSRATESTVPSTIPALHTDVYHLGQGVQVQRPTGIADRPGQRFFQKWKGPDKISKIYGDWIDDIE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="89256" e_stop="89947"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="89256" e_stop="89947" e_length="692"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89256" stop="89947"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343771" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTCTTTCAGTATAGGATGACTGTAGTTCTCTTTGTTATGCTCATTAATACTTCCGCACCACTTCTATCTCCTCTTCTGTTGAAGCCATGCTAGCAAAACCTCTTTTAAACTCTGGTCGCAACAAGATAAAATTTACATCTATTGTAAATTCTTTGCCAAACCTATGTAAATCTCTCAACCTATGAGGTTGTTGAAAATTTTGGTGGGAATGGAAATTACAGGATGTGCTTTTCTACAACCCCTTTGTTGGATAGATGGAAGATTAGTTTTGTAATGGGTATGATTGATGGGAATGCTATTCTTGGTTCACTGGGAAATGTCATTGACACTATAATTTTAGTGTTGATCTTAGTTATCTATCTTACTTGTGTTTGCCATATCAATTAACCTAATATTTCTTGTTCTCAACTATCTGCTTAATAACTATACTCACTCTTGTCATCGTCCTTCTCTTTATTGATACCTCTATATATGAGATTATCTGTTGAATGACATCAGATACCGAATTCATTACATTTTTTATGTGTGGTTATAATATTGGGTAAATATGTATGACTTTACATAGATTAGGCTTTAAATACTCGTGCCAAAGGATAAATACGACTTTGTAACTATTAGGGTATGCCCTTTATTTTGATTAACTTTTGGTGTACTCGTGTATACAGATAATCCATATCTTTTTTCAAGTCTC</gDNA_template>
            <first_frame> F  L  S  V  *  D  D  C  S  S  L  C  Y  A  H  *  Y  F  R  T  T  S  I  S  S  S  V  E  A  M  L  A  K  P  L  L  N  S  G  R  N  K  I  K  F  T  S  I  V  N  S  L  P  N  L  C  K  S  L  N  L  *  G  C  *  K  F  W  W  E  W  K  L  Q  D  V  L  F  Y  N  P  F  V  G  *  M  E  D  *  F  C  N  G  Y  D  *  W  E  C  Y  S  W  F  T  G  K  C  H  *  H  Y  N  F  S  V  D  L  S  Y  L  S  Y  L  C  L  P  Y  Q  L  T  *  Y  F  L  F  S  T  I  C  L  I  T  I  L  T  L  V  I  V  L  L  F  I  D  T  S  I  Y  E  I  I  C  *  M  T  S  D  T  E  F  I  T  F  F  M  C  G  Y  N  I  G  *  I  C  M  T  L  H  R  L  G  F  K  Y  S  C  Q  R  I  N  T  T  L  *  L  L  G  Y  A  L  Y  F  D  *  L  L  V  Y  S  C  I  Q  I  I  H  I  F  F  Q  V   </first_frame>
            <second_frame>  F  F  Q  Y  R  M  T  V  V  L  F  V  M  L  I  N  T  S  A  P  L  L  S  P  L  L  L  K  P  C  *  Q  N  L  F  *  T  L  V  A  T  R  *  N  L  H  L  L  *  I  L  C  Q  T  Y  V  N  L  S  T  Y  E  V  V  E  N  F  G  G  N  G  N  Y  R  M  C  F  S  T  T  P  L  L  D  R  W  K  I  S  F  V  M  G  M  I  D  G  N  A  I  L  G  S  L  G  N  V  I  D  T  I  I  L  V  L  I  L  V  I  Y  L  T  C  V  C  H  I  N  *  P  N  I  S  C  S  Q  L  S  A  *  *  L  Y  S  L  L  S  S  S  F  S  L  L  I  P  L  Y  M  R  L  S  V  E  *  H  Q  I  P  N  S  L  H  F  L  C  V  V  I  I  L  G  K  Y  V  *  L  Y  I  D  *  A  L  N  T  R  A  K  G  *  I  R  L  C  N  Y  *  G  M  P  F  I  L  I  N  F  W  C  T  R  V  Y  R  *  S  I  S  F  F  K  S  </second_frame>
            <third_frame>   S  F  S  I  G  *  L  *  F  S  L  L  C  S  L  I  L  P  H  H  F  Y  L  L  F  C  *  S  H  A  S  K  T  S  F  K  L  W  S  Q  Q  D  K  I  Y  I  Y  C  K  F  F  A  K  P  M  *  I  S  Q  P  M  R  L  L  K  I  L  V  G  M  E  I  T  G  C  A  F  L  Q  P  L  C  W  I  D  G  R  L  V  L  *  W  V  *  L  M  G  M  L  F  L  V  H  W  E  M  S  L  T  L  *  F  *  C  *  S  *  L  S  I  L  L  V  F  A  I  S  I  N  L  I  F  L  V  L  N  Y  L  L  N  N  Y  T  H  S  C  H  R  P  S  L  Y  *  Y  L  Y  I  *  D  Y  L  L  N  D  I  R  Y  R  I  H  Y  I  F  Y  V  W  L  *  Y  W  V  N  M  Y  D  F  T  *  I  R  L  *  I  L  V  P  K  D  K  Y  D  F  V  T  I  R  V  C  P  L  F  *  L  T  F  G  V  L  V  Y  T  D  N  P  Y  L  F  S  S  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0113N10.1" strand="+"/>
                <serials PGL_serial="17" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="89404" stop="89643"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ILCQTYVNLSTYEVVENFGGNGNYRMCFSTTPLLDRWKISFVMGMIDGNAILGSLGNVIDTIILVLILVIYLTCVCHIN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="-" PGL_start="96357" PGL_stop="91271"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="96357" e_stop="96234"/>
            <exon e_start="95757" e_stop="94942"/>
            <exon e_start="94232" e_stop="94034"/>
            <exon e_start="93913" e_stop="93821"/>
            <exon e_start="93711" e_stop="93583"/>
            <exon e_start="93462" e_stop="93409"/>
            <exon e_start="93333" e_stop="93256"/>
            <exon e_start="93056" e_stop="92994"/>
            <exon e_start="92138" e_stop="92026"/>
            <exon e_start="91860" e_stop="91383"/>
            <exon e_start="91280" e_stop="91273"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.877" acc_prob="0.628" e_score="0.991"/>
          <exon-intron don_prob="0.992" acc_prob="0.871" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.888" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.970" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.963" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.722" e_score="0.908"/>
          <exon-only e_score="0.875"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="96357" e_stop="96234" e_length="124"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.980">
            <gDNA_intron_boundary i_start="96233" i_stop="95758" i_length="476"/>
          </intron>
          <exon e_serial="2" e_score="0.991">
            <gDNA_exon_boundary e_start="95757" e_stop="94942" e_length="816"/>
          </exon>
          <intron i_serial="2" don_prob="0.877" acc_prob="0.628">
            <gDNA_intron_boundary i_start="94941" i_stop="94233" i_length="709"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="94232" e_stop="94034" e_length="199"/>
          </exon>
          <intron i_serial="3" don_prob="0.992" acc_prob="0.871">
            <gDNA_intron_boundary i_start="94033" i_stop="93914" i_length="120"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="93913" e_stop="93821" e_length="93"/>
          </exon>
          <intron i_serial="4" don_prob="0.996" acc_prob="0.888">
            <gDNA_intron_boundary i_start="93820" i_stop="93712" i_length="109"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="93711" e_stop="93583" e_length="129"/>
          </exon>
          <intron i_serial="5" don_prob="0.988" acc_prob="0.982">
            <gDNA_intron_boundary i_start="93582" i_stop="93463" i_length="120"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="93462" e_stop="93409" e_length="54"/>
          </exon>
          <intron i_serial="6" don_prob="0.999" acc_prob="0.970">
            <gDNA_intron_boundary i_start="93408" i_stop="93334" i_length="75"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="93333" e_stop="93256" e_length="78"/>
          </exon>
          <intron i_serial="7" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="93255" i_stop="93057" i_length="199"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="93056" e_stop="92994" e_length="63"/>
          </exon>
          <intron i_serial="8" don_prob="1.000" acc_prob="0.963">
            <gDNA_intron_boundary i_start="92993" i_stop="92139" i_length="855"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="92138" e_stop="92026" e_length="113"/>
          </exon>
          <intron i_serial="9" don_prob="0.993" acc_prob="0.999">
            <gDNA_intron_boundary i_start="92025" i_stop="91861" i_length="165"/>
          </intron>
          <exon e_serial="10" e_score="0.908">
            <gDNA_exon_boundary e_start="91860" e_stop="91383" e_length="478"/>
          </exon>
          <intron i_serial="10" don_prob="0.000" acc_prob="0.722">
            <gDNA_intron_boundary i_start="91382" i_stop="91281" i_length="102"/>
          </intron>
          <exon e_serial="11" e_score="0.875">
            <gDNA_exon_boundary e_start="91280" e_stop="91273" e_length="8"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96357" stop="96234"/>
              <exon start="95757" stop="95330"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314071" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96292" stop="96234"/>
              <exon start="95757" stop="95116"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E415141" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96292" stop="96234"/>
              <exon start="95757" stop="95330"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E475203" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96262" stop="96234"/>
              <exon start="95757" stop="95076"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320344" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95757" stop="95211"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E460501" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95757" stop="95257"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E470774" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95757" stop="95272"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E460785" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95757" stop="95345"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E470543" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95757" stop="95358"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E460776" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95514" stop="95101"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358137" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95092" stop="94942"/>
              <exon start="94232" stop="94034"/>
              <exon start="93913" stop="93821"/>
              <exon start="93711" stop="93583"/>
              <exon start="93462" stop="93409"/>
              <exon start="93333" stop="93307"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371475" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95092" stop="94942"/>
              <exon start="94232" stop="94034"/>
              <exon start="93913" stop="93836"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282813" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94164" stop="94034"/>
              <exon start="93913" stop="93821"/>
              <exon start="93711" stop="93583"/>
              <exon start="93462" stop="93439"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E444329" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93858" stop="93821"/>
              <exon start="93711" stop="93583"/>
              <exon start="93462" stop="93409"/>
              <exon start="93333" stop="93256"/>
              <exon start="93056" stop="92994"/>
              <exon start="92138" stop="92050"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E479234" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93697" stop="93583"/>
              <exon start="93462" stop="93409"/>
              <exon start="93333" stop="93256"/>
              <exon start="93056" stop="92994"/>
              <exon start="92138" stop="92026"/>
              <exon start="91860" stop="91744"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E610948" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93602" stop="93583"/>
              <exon start="93462" stop="93409"/>
              <exon start="93333" stop="93256"/>
              <exon start="93056" stop="92994"/>
              <exon start="92138" stop="92026"/>
              <exon start="91860" stop="91795"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279833" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93437" stop="93409"/>
              <exon start="93333" stop="93256"/>
              <exon start="93056" stop="92994"/>
              <exon start="92138" stop="92026"/>
              <exon start="91860" stop="91425"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733632" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93019" stop="92994"/>
              <exon start="92138" stop="92026"/>
              <exon start="91860" stop="91383"/>
              <exon start="91280" stop="91273"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E415142" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92090" stop="92026"/>
              <exon start="91860" stop="91436"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E622311" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91823" stop="91384"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E467791" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACACTTGGTTATTTTCCACCAGTACTTTTCATCATTCTAAATTAAAAACACATTTTTCATTTCAGTTAGCAACTGAACACACTCACGCTTATCTTTCTTCATCAATCGTCATTGCTAAATTCAG : AAGCTTGAGAAGGGAGGTTAAATTCCAGAATCAATATAGCTCTTAGTCATCACTCATCAGCTGGTATGGTTGTGATTCAGAAACCTTGTTAAACACGGTGTGTGGTTTTGGATTTTTCATAGTTGTAGCGCTTGTGATGGCCATTGCTGCAGTTATCGGACCCTATGCAGGAAATAGAATCTTAAGCTCGTCTTTCTATTATTCTGATCTGACTGAAAAGTTAGCTTGTAGTGGTGATCATGCTTTGATCTGCAATCCTACGAGAAATGTGATCAATGCTAAGAAGTCATCCAATTATAGCGCTGGTTATGTTTCCAATCGAAAAAAACAATCCGTTAAGGCTGTTAAAGAGCATGTCAACATTGCCTCTAATCATTCTGATGTGGAGCCAATGGTTGAAATGTTAAAAAAACTGCAGAATGAAAGCTGCAGCAAAGAAGATCCGGTGGAGGTTCTTCTTCTTCTGCAGAAATCTATGCTTGAAAAACAGTGGAATCTTTCAGCTGAGAAAACATTGGAAGCTTTCCCACCAAATGAAAAGAACTGTAAAAAGAAGATGCAGATCACTTGTTCAGGAACTTCTGCTAGGCGGAGGAGAATGGATACTCGTAAAAGAGTTCAAATTCCAAAAGCTTCAGCTGAAGCAAATAGTGCAAGCAAGCGACTGAGATCTGTTGTCGGTCCAGAGCTACAACAAAACCGTTTGAGAGGTTACATGAATGGTGTCGTAAACCAAGAACTTCTTACACATAAGGAAGTGGTGCAACTATCCAAGAAAATCAAATTTGGTCTTTATTTAGAAGAACAGAAGGCCAG : TCTGAAGGAAAGATTGGGATGTGAACCTTCTGACGATCAACTCGCGGTTTCCTTGAAGATGTCTCTTGCTGATTTACGATCTACATTAATGGAGTGTTCCTTGGCTAGAGAAAAACTTGCAATGAGCAATGTTCGTCTTGTCATGTCAATTGCGCAAAGATACGATAGCATGGGTACTGAAATGGCTGACCTCATTCAG : GGGGGACTTATTGGACTACTTCGCGGGATAGAGAAATTTGATCACTCAAGAGGATTCAAAATCTCAACTTATGTTTATTGGTGGATTCGTCAG : GGCGTTTCCCGAGCATTAGTTGATAACTCAAGAACATTGAGATTGCCCATACATCTACATGAAAGACTGAGTTTGATCCGTAATGCAAAAGTCAAGCTTAAAGATAGTGGAATAACTCCATCAATCGAA : AAAATAGCTGAATGCCTTAACATGTCCCAGAAGAAAGTCAGAAATGCAACTGAG : GCAAGCAGCAAGGTGTTTTCACTTGATAGGGAAGCATATCCCTCTTTAAATGGCCTTCCTGGAGCAACACTTCATAGC : TACATTGCTGACAATCGCCTGGAGAACAACCCATGGCATGGAGTTGATGGATGGGCGCTCAAG : GATGAAGTAAACAATCTCATTTCTTCAATTCTCAGGGAACGCGAGAGAGATATTATCCGACTGTACTATGGTCTGGACAATGAGTGCCTTACCTGGGAGGATATTAGTAGAAG : GATAGGTTTATCCAGAGAAAGAGTGAGGCAAGTTGGATTAGTTGCACTTGAGAAATTAAAACATGCTGCCAGAAAAAAGCAATTAGATGCAATGTTGGTTAAACATTGAGTATGATCGTTGAGACCAAACTACAAATGAACTGTACATAGAATGTAAGGAAACCTGCATCTCCTATTTTATTTTCTTGATGAGGAGAACAGATGAAGATCAAAGGGACATTCTTCACCATCTACTTCCCTGCTCCTGTCCCAAGCCTCCAAAAGAAGAGTCAGAAAGATGTGGTGAAGATTTTTGTGCATCATATATTTTAGGATGTATCTGTGTTTATTGAGATAGGAGGTAGGTAAATGCAAATACTGTATATATGTTCTCTGTGTTGACTTATTTCATACACTTGAATGTGATAATGTCCATTTTATATGATGTATCTTGATGAAAAACACAGTTTCCAGAATGTTAATCTGACTTTGTACACAA : ATAAAAAA</gDNA_template>
            <first_frame> T  L  G  Y  F  P  P  V  L  F  I  I  L  N  *  K  H  I  F  H  F  S  *  Q  L  N  T  L  T  L  I  F  L  H  Q  S  S  L  L  N  S   : E  A  *  E  G  R  L  N  S  R  I  N  I  A  L  S  H  H  S  S  A  G  M  V  V  I  Q  K  P  C  *  T  R  C  V  V  L  D  F  S  *  L  *  R  L  *  W  P  L  L  Q  L  S  D  P  M  Q  E  I  E  S  *  A  R  L  S  I  I  L  I  *  L  K  S  *  L  V  V  V  I  M  L  *  S  A  I  L  R  E  M  *  S  M  L  R  S  H  P  I  I  A  L  V  M  F  P  I  E  K  N  N  P  L  R  L  L  K  S  M  S  T  L  P  L  I  I  L  M  W  S  Q  W  L  K  C  *  K  N  C  R  M  K  A  A  A  K  K  I  R  W  R  F  F  F  F  C  R  N  L  C  L  K  N  S  G  I  F  Q  L  R  K  H  W  K  L  S  H  Q  M  K  R  T  V  K  R  R  C  R  S  L  V  Q  E  L  L  L  G  G  G  E  W  I  L  V  K  E  F  K  F  Q  K  L  Q  L  K  Q  I  V  Q  A  S  D  *  D  L  L  S  V  Q  S  Y  N  K  T  V  *  E  V  T  *  M  V  S  *  T  K  N  F  L  H  I  R  K  W  C  N  Y  P  R  K  S  N  L  V  F  I  *  K  N  R  R  P   : V  *  R  K  D  W  D  V  N  L  L  T  I  N  S  R  F  P  *  R  C  L  L  L  I  Y  D  L  H  *  W  S  V  P  W  L  E  K  N  L  Q  *  A  M  F  V  L  S  C  Q  L  R  K  D  T  I  A  W  V  L  K  W  L  T  S  F  R :   G  D  L  L  D  Y  F  A  G  *  R  N  L  I  T  Q  E  D  S  K  S  Q  L  M  F  I  G  G  F  V  R :   A  F  P  E  H  *  L  I  T  Q  E  H  *  D  C  P  Y  I  Y  M  K  D  *  V  *  S  V  M  Q  K  S  S  L  K  I  V  E  *  L  H  Q  S  K :   K  *  L  N  A  L  T  C  P  R  R  K  S  E  M  Q  L  R :   Q  A  A  R  C  F  H  L  I  G  K  H  I  P  L  *  M  A  F  L  E  Q  H  F  I  A :   T  L  L  T  I  A  W  R  T  T  H  G  M  E  L  M  D  G  R  S  R :   M  K  *  T  I  S  F  L  Q  F  S  G  N  A  R  E  I  L  S  D  C  T  M  V  W  T  M  S  A  L  P  G  R  I  L  V  E   : G  *  V  Y  P  E  K  E  *  G  K  L  D  *  L  H  L  R  N  *  N  M  L  P  E  K  S  N  *  M  Q  C  W  L  N  I  E  Y  D  R  *  D  Q  T  T  N  E  L  Y  I  E  C  K  E  T  C  I  S  Y  F  I  F  L  M  R  R  T  D  E  D  Q  R  D  I  L  H  H  L  L  P  C  S  C  P  K  P  P  K  E  E  S  E  R  C  G  E  D  F  C  A  S  Y  I  L  G  C  I  C  V  Y  *  D  R  R  *  V  N  A  N  T  V  Y  M  F  S  V  L  T  Y  F  I  H  L  N  V  I  M  S  I  L  Y  D  V  S  *  *  K  T  Q  F  P  E  C  *  S  D  F  V  H  K :   *  K  </first_frame>
            <second_frame>  H  L  V  I  F  H  Q  Y  F  S  S  F  *  I  K  N  T  F  F  I  S  V  S  N  *  T  H  S  R  L  S  F  F  I  N  R  H  C  *  I  Q  :  K  L  E  K  G  G  *  I  P  E  S  I  *  L  L  V  I  T  H  Q  L  V  W  L  *  F  R  N  L  V  K  H  G  V  W  F  W  I  F  H  S  C  S  A  C  D  G  H  C  C  S  Y  R  T  L  C  R  K  *  N  L  K  L  V  F  L  L  F  *  S  D  *  K  V  S  L  *  W  *  S  C  F  D  L  Q  S  Y  E  K  C  D  Q  C  *  E  V  I  Q  L  *  R  W  L  C  F  Q  S  K  K  T  I  R  *  G  C  *  R  A  C  Q  H  C  L  *  S  F  *  C  G  A  N  G  *  N  V  K  K  T  A  E  *  K  L  Q  Q  R  R  S  G  G  G  S  S  S  S  A  E  I  Y  A  *  K  T  V  E  S  F  S  *  E  N  I  G  S  F  P  T  K  *  K  E  L  *  K  E  D  A  D  H  L  F  R  N  F  C  *  A  E  E  N  G  Y  S  *  K  S  S  N  S  K  S  F  S  *  S  K  *  C  K  Q  A  T  E  I  C  C  R  S  R  A  T  T  K  P  F  E  R  L  H  E  W  C  R  K  P  R  T  S  Y  T  *  G  S  G  A  T  I  Q  E  N  Q  I  W  S  L  F  R  R  T  E  G  Q  :  S  E  G  K  I  G  M  *  T  F  *  R  S  T  R  G  F  L  E  D  V  S  C  *  F  T  I  Y  I  N  G  V  F  L  G  *  R  K  T  C  N  E  Q  C  S  S  C  H  V  N  C  A  K  I  R  *  H  G  Y  *  N  G  *  P  H  S   : G  G  T  Y  W  T  T  S  R  D  R  E  I  *  S  L  K  R  I  Q  N  L  N  L  C  L  L  V  D  S  S   : G  R  F  P  S  I  S  *  *  L  K  N  I  E  I  A  H  T  S  T  *  K  T  E  F  D  P  *  C  K  S  Q  A  *  R  *  W  N  N  S  I  N  R   : K  N  S  *  M  P  *  H  V  P  E  E  S  Q  K  C  N  *   : G  K  Q  Q  G  V  F  T  *  *  G  S  I  S  L  F  K  W  P  S  W  S  N  T  S  *   : L  H  C  *  Q  S  P  G  E  Q  P  M  A  W  S  *  W  M  G  A  Q   : G  *  S  K  Q  S  H  F  F  N  S  Q  G  T  R  E  R  Y  Y  P  T  V  L  W  S  G  Q  *  V  P  Y  L  G  G  Y  *  *  K  :  D  R  F  I  Q  R  K  S  E  A  S  W  I  S  C  T  *  E  I  K  T  C  C  Q  K  K  A  I  R  C  N  V  G  *  T  L  S  M  I  V  E  T  K  L  Q  M  N  C  T  *  N  V  R  K  P  A  S  P  I  L  F  S  *  *  G  E  Q  M  K  I  K  G  T  F  F  T  I  Y  F  P  A  P  V  P  S  L  Q  K  K  S  Q  K  D  V  V  K  I  F  V  H  H  I  F  *  D  V  S  V  F  I  E  I  G  G  R  *  M  Q  I  L  Y  I  C  S  L  C  *  L  I  S  Y  T  *  M  *  *  C  P  F  Y  M  M  Y  L  D  E  K  H  S  F  Q  N  V  N  L  T  L  Y  T   : N  K  K </second_frame>
            <third_frame>   T  W  L  F  S  T  S  T  F  H  H  S  K  L  K  T  H  F  S  F  Q  L  A  T  E  H  T  H  A  Y  L  S  S  S  I  V  I  A  K  F  R :   S  L  R  R  E  V  K  F  Q  N  Q  Y  S  S  *  S  S  L  I  S  W  Y  G  C  D  S  E  T  L  L  N  T  V  C  G  F  G  F  F  I  V  V  A  L  V  M  A  I  A  A  V  I  G  P  Y  A  G  N  R  I  L  S  S  S  F  Y  Y  S  D  L  T  E  K  L  A  C  S  G  D  H  A  L  I  C  N  P  T  R  N  V  I  N  A  K  K  S  S  N  Y  S  A  G  Y  V  S  N  R  K  K  Q  S  V  K  A  V  K  E  H  V  N  I  A  S  N  H  S  D  V  E  P  M  V  E  M  L  K  K  L  Q  N  E  S  C  S  K  E  D  P  V  E  V  L  L  L  L  Q  K  S  M  L  E  K  Q  W  N  L  S  A  E  K  T  L  E  A  F  P  P  N  E  K  N  C  K  K  K  M  Q  I  T  C  S  G  T  S  A  R  R  R  R  M  D  T  R  K  R  V  Q  I  P  K  A  S  A  E  A  N  S  A  S  K  R  L  R  S  V  V  G  P  E  L  Q  Q  N  R  L  R  G  Y  M  N  G  V  V  N  Q  E  L  L  T  H  K  E  V  V  Q  L  S  K  K  I  K  F  G  L  Y  L  E  E  Q  K  A  S :   L  K  E  R  L  G  C  E  P  S  D  D  Q  L  A  V  S  L  K  M  S  L  A  D  L  R  S  T  L  M  E  C  S  L  A  R  E  K  L  A  M  S  N  V  R  L  V  M  S  I  A  Q  R  Y  D  S  M  G  T  E  M  A  D  L  I  Q  :  G  G  L  I  G  L  L  R  G  I  E  K  F  D  H  S  R  G  F  K  I  S  T  Y  V  Y  W  W  I  R  Q  :  G  V  S  R  A  L  V  D  N  S  R  T  L  R  L  P  I  H  L  H  E  R  L  S  L  I  R  N  A  K  V  K  L  K  D  S  G  I  T  P  S  I  E  :  K  I  A  E  C  L  N  M  S  Q  K  K  V  R  N  A  T  E  :  A  S  S  K  V  F  S  L  D  R  E  A  Y  P  S  L  N  G  L  P  G  A  T  L  H  S  :  Y  I  A  D  N  R  L  E  N  N  P  W  H  G  V  D  G  W  A  L  K  :  D  E  V  N  N  L  I  S  S  I  L  R  E  R  E  R  D  I  I  R  L  Y  Y  G  L  D  N  E  C  L  T  W  E  D  I  S  R  R :   I  G  L  S  R  E  R  V  R  Q  V  G  L  V  A  L  E  K  L  K  H  A  A  R  K  K  Q  L  D  A  M  L  V  K  H  *  V  *  S  L  R  P  N  Y  K  *  T  V  H  R  M  *  G  N  L  H  L  L  F  Y  F  L  D  E  E  N  R  *  R  S  K  G  H  S  S  P  S  T  S  L  L  L  S  Q  A  S  K  R  R  V  R  K  M  W  *  R  F  L  C  I  I  Y  F  R  M  Y  L  C  L  L  R  *  E  V  G  K  C  K  Y  C  I  Y  V  L  C  V  D  L  F  H  T  L  E  C  D  N  V  H  F  I  *  C  I  L  M  K  N  T  V  S  R  M  L  I  *  L  C  T  Q  :  I  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0113N10.1" strand="-"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="95711" stop="94942"/>
                    <exon start="94232" stop="94034"/>
                    <exon start="93913" stop="93821"/>
                    <exon start="93711" stop="93583"/>
                    <exon start="93462" stop="93409"/>
                    <exon start="93333" stop="93256"/>
                    <exon start="93056" stop="92994"/>
                    <exon start="92138" stop="92026"/>
                    <exon start="91860" stop="91752"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1605</number_coding_nucleotides>
                  <number_encoded_amino_acids>535</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSLISWYGCDSETLLNTVCGFGFFIVVALVMAIAAVIGPYAGNRILSSSFYYSDLTEKLACSGDHALICNPTRNVINAKKSSNYSAGYVSNRKKQSVKAVKEHVNIASNHSDVEPMVEMLKKLQNESCSKEDPVEVLLLLQKSMLEKQWNLSAEKTLEAFPPNEKNCKKKMQITCSGTSARRRRMDTRKRVQIPKASAEANSASKRLRSVVGPELQQNRLRGYMNGVVNQELLTHKEVVQLSKKIKFGLYLEEQKASLKERLGCEPSDDQLAVSLKMSLADLRSTLMECSLAREKLAMSNVRLVMSIAQRYDSMGTEMADLIQGGLIGLLRGIEKFDHSRGFKISTYVYWWIRQGVSRALVDNSRTLRLPIHLHERLSLIRNAKVKLKDSGITPSIEKIAECLNMSQKKVRNATEASSKVFSLDREAYPSLNGLPGATLHSYIADNRLENNPWHGVDGWALKDEVNNLISSILRERERDIIRLYYGLDNECLTWEDISRRIGLSRERVRQVGLVALEKLKHAARKKQLDAMLVKH*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0113N10.1" strand="-"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="91738" stop="91529"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DQTTNELYIECKETCISYFIFLMRRTDEDQRDILHHLLPCSCPKPPKEESERCGEDFCASYILGCICVY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="96357" e_stop="96234"/>
            <exon e_start="95757" e_stop="94942"/>
            <exon e_start="94232" e_stop="94034"/>
            <exon e_start="93913" e_stop="93821"/>
            <exon e_start="93711" e_stop="93583"/>
            <exon e_start="93462" e_stop="93409"/>
            <exon e_start="93333" e_stop="93256"/>
            <exon e_start="93056" e_stop="92994"/>
            <exon e_start="92138" e_stop="92026"/>
            <exon e_start="91860" e_stop="91384"/>
            <exon e_start="91280" e_stop="91271"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.877" acc_prob="0.628" e_score="0.991"/>
          <exon-intron don_prob="0.992" acc_prob="0.871" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.888" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.970" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.963" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.722" e_score="0.922"/>
          <exon-only e_score="0.800"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="96357" e_stop="96234" e_length="124"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.980">
            <gDNA_intron_boundary i_start="96233" i_stop="95758" i_length="476"/>
          </intron>
          <exon e_serial="2" e_score="0.991">
            <gDNA_exon_boundary e_start="95757" e_stop="94942" e_length="816"/>
          </exon>
          <intron i_serial="2" don_prob="0.877" acc_prob="0.628">
            <gDNA_intron_boundary i_start="94941" i_stop="94233" i_length="709"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="94232" e_stop="94034" e_length="199"/>
          </exon>
          <intron i_serial="3" don_prob="0.992" acc_prob="0.871">
            <gDNA_intron_boundary i_start="94033" i_stop="93914" i_length="120"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="93913" e_stop="93821" e_length="93"/>
          </exon>
          <intron i_serial="4" don_prob="0.996" acc_prob="0.888">
            <gDNA_intron_boundary i_start="93820" i_stop="93712" i_length="109"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="93711" e_stop="93583" e_length="129"/>
          </exon>
          <intron i_serial="5" don_prob="0.988" acc_prob="0.982">
            <gDNA_intron_boundary i_start="93582" i_stop="93463" i_length="120"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="93462" e_stop="93409" e_length="54"/>
          </exon>
          <intron i_serial="6" don_prob="0.999" acc_prob="0.970">
            <gDNA_intron_boundary i_start="93408" i_stop="93334" i_length="75"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="93333" e_stop="93256" e_length="78"/>
          </exon>
          <intron i_serial="7" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="93255" i_stop="93057" i_length="199"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="93056" e_stop="92994" e_length="63"/>
          </exon>
          <intron i_serial="8" don_prob="1.000" acc_prob="0.963">
            <gDNA_intron_boundary i_start="92993" i_stop="92139" i_length="855"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="92138" e_stop="92026" e_length="113"/>
          </exon>
          <intron i_serial="9" don_prob="0.993" acc_prob="0.999">
            <gDNA_intron_boundary i_start="92025" i_stop="91861" i_length="165"/>
          </intron>
          <exon e_serial="10" e_score="0.922">
            <gDNA_exon_boundary e_start="91860" e_stop="91384" e_length="477"/>
          </exon>
          <intron i_serial="10" don_prob="0.000" acc_prob="0.722">
            <gDNA_intron_boundary i_start="91383" i_stop="91281" i_length="103"/>
          </intron>
          <exon e_serial="11" e_score="0.800">
            <gDNA_exon_boundary e_start="91280" e_stop="91271" e_length="10"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96357" stop="96234"/>
              <exon start="95757" stop="95330"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314071" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96292" stop="96234"/>
              <exon start="95757" stop="95116"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E415141" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96292" stop="96234"/>
              <exon start="95757" stop="95330"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E475203" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96262" stop="96234"/>
              <exon start="95757" stop="95076"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320344" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95757" stop="95211"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E460501" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95757" stop="95257"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E470774" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95757" stop="95272"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E460785" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95757" stop="95345"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E470543" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95757" stop="95358"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E460776" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95514" stop="95101"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358137" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95092" stop="94942"/>
              <exon start="94232" stop="94034"/>
              <exon start="93913" stop="93821"/>
              <exon start="93711" stop="93583"/>
              <exon start="93462" stop="93409"/>
              <exon start="93333" stop="93307"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371475" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95092" stop="94942"/>
              <exon start="94232" stop="94034"/>
              <exon start="93913" stop="93836"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282813" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94164" stop="94034"/>
              <exon start="93913" stop="93821"/>
              <exon start="93711" stop="93583"/>
              <exon start="93462" stop="93439"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E444329" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93858" stop="93821"/>
              <exon start="93711" stop="93583"/>
              <exon start="93462" stop="93409"/>
              <exon start="93333" stop="93256"/>
              <exon start="93056" stop="92994"/>
              <exon start="92138" stop="92050"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E479234" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93697" stop="93583"/>
              <exon start="93462" stop="93409"/>
              <exon start="93333" stop="93256"/>
              <exon start="93056" stop="92994"/>
              <exon start="92138" stop="92026"/>
              <exon start="91860" stop="91744"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E610948" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93602" stop="93583"/>
              <exon start="93462" stop="93409"/>
              <exon start="93333" stop="93256"/>
              <exon start="93056" stop="92994"/>
              <exon start="92138" stop="92026"/>
              <exon start="91860" stop="91795"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279833" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93437" stop="93409"/>
              <exon start="93333" stop="93256"/>
              <exon start="93056" stop="92994"/>
              <exon start="92138" stop="92026"/>
              <exon start="91860" stop="91425"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733632" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92095" stop="92026"/>
              <exon start="91860" stop="91384"/>
              <exon start="91280" stop="91271"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E411117" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92090" stop="92026"/>
              <exon start="91860" stop="91436"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E622311" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91823" stop="91384"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E467791" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACACTTGGTTATTTTCCACCAGTACTTTTCATCATTCTAAATTAAAAACACATTTTTCATTTCAGTTAGCAACTGAACACACTCACGCTTATCTTTCTTCATCAATCGTCATTGCTAAATTCAG : AAGCTTGAGAAGGGAGGTTAAATTCCAGAATCAATATAGCTCTTAGTCATCACTCATCAGCTGGTATGGTTGTGATTCAGAAACCTTGTTAAACACGGTGTGTGGTTTTGGATTTTTCATAGTTGTAGCGCTTGTGATGGCCATTGCTGCAGTTATCGGACCCTATGCAGGAAATAGAATCTTAAGCTCGTCTTTCTATTATTCTGATCTGACTGAAAAGTTAGCTTGTAGTGGTGATCATGCTTTGATCTGCAATCCTACGAGAAATGTGATCAATGCTAAGAAGTCATCCAATTATAGCGCTGGTTATGTTTCCAATCGAAAAAAACAATCCGTTAAGGCTGTTAAAGAGCATGTCAACATTGCCTCTAATCATTCTGATGTGGAGCCAATGGTTGAAATGTTAAAAAAACTGCAGAATGAAAGCTGCAGCAAAGAAGATCCGGTGGAGGTTCTTCTTCTTCTGCAGAAATCTATGCTTGAAAAACAGTGGAATCTTTCAGCTGAGAAAACATTGGAAGCTTTCCCACCAAATGAAAAGAACTGTAAAAAGAAGATGCAGATCACTTGTTCAGGAACTTCTGCTAGGCGGAGGAGAATGGATACTCGTAAAAGAGTTCAAATTCCAAAAGCTTCAGCTGAAGCAAATAGTGCAAGCAAGCGACTGAGATCTGTTGTCGGTCCAGAGCTACAACAAAACCGTTTGAGAGGTTACATGAATGGTGTCGTAAACCAAGAACTTCTTACACATAAGGAAGTGGTGCAACTATCCAAGAAAATCAAATTTGGTCTTTATTTAGAAGAACAGAAGGCCAG : TCTGAAGGAAAGATTGGGATGTGAACCTTCTGACGATCAACTCGCGGTTTCCTTGAAGATGTCTCTTGCTGATTTACGATCTACATTAATGGAGTGTTCCTTGGCTAGAGAAAAACTTGCAATGAGCAATGTTCGTCTTGTCATGTCAATTGCGCAAAGATACGATAGCATGGGTACTGAAATGGCTGACCTCATTCAG : GGGGGACTTATTGGACTACTTCGCGGGATAGAGAAATTTGATCACTCAAGAGGATTCAAAATCTCAACTTATGTTTATTGGTGGATTCGTCAG : GGCGTTTCCCGAGCATTAGTTGATAACTCAAGAACATTGAGATTGCCCATACATCTACATGAAAGACTGAGTTTGATCCGTAATGCAAAAGTCAAGCTTAAAGATAGTGGAATAACTCCATCAATCGAA : AAAATAGCTGAATGCCTTAACATGTCCCAGAAGAAAGTCAGAAATGCAACTGAG : GCAAGCAGCAAGGTGTTTTCACTTGATAGGGAAGCATATCCCTCTTTAAATGGCCTTCCTGGAGCAACACTTCATAGC : TACATTGCTGACAATCGCCTGGAGAACAACCCATGGCATGGAGTTGATGGATGGGCGCTCAAG : GATGAAGTAAACAATCTCATTTCTTCAATTCTCAGGGAACGCGAGAGAGATATTATCCGACTGTACTATGGTCTGGACAATGAGTGCCTTACCTGGGAGGATATTAGTAGAAG : GATAGGTTTATCCAGAGAAAGAGTGAGGCAAGTTGGATTAGTTGCACTTGAGAAATTAAAACATGCTGCCAGAAAAAAGCAATTAGATGCAATGTTGGTTAAACATTGAGTATGATCGTTGAGACCAAACTACAAATGAACTGTACATAGAATGTAAGGAAACCTGCATCTCCTATTTTATTTTCTTGATGAGGAGAACAGATGAAGATCAAAGGGACATTCTTCACCATCTACTTCCCTGCTCCTGTCCCAAGCCTCCAAAAGAAGAGTCAGAAAGATGTGGTGAAGATTTTTGTGCATCATATATTTTAGGATGTATCTGTGTTTATTGAGATAGGAGGTAGGTAAATGCAAATACTGTATATATGTTCTCTGTGTTGACTTATTTCATACACTTGAATGTGATAATGTCCATTTTATATGATGTATCTTGATGAAAAACACAGTTTCCAGAATGTTAATCTGACTTTGTACACA : ATAAAAAAGC</gDNA_template>
            <first_frame> T  L  G  Y  F  P  P  V  L  F  I  I  L  N  *  K  H  I  F  H  F  S  *  Q  L  N  T  L  T  L  I  F  L  H  Q  S  S  L  L  N  S   : E  A  *  E  G  R  L  N  S  R  I  N  I  A  L  S  H  H  S  S  A  G  M  V  V  I  Q  K  P  C  *  T  R  C  V  V  L  D  F  S  *  L  *  R  L  *  W  P  L  L  Q  L  S  D  P  M  Q  E  I  E  S  *  A  R  L  S  I  I  L  I  *  L  K  S  *  L  V  V  V  I  M  L  *  S  A  I  L  R  E  M  *  S  M  L  R  S  H  P  I  I  A  L  V  M  F  P  I  E  K  N  N  P  L  R  L  L  K  S  M  S  T  L  P  L  I  I  L  M  W  S  Q  W  L  K  C  *  K  N  C  R  M  K  A  A  A  K  K  I  R  W  R  F  F  F  F  C  R  N  L  C  L  K  N  S  G  I  F  Q  L  R  K  H  W  K  L  S  H  Q  M  K  R  T  V  K  R  R  C  R  S  L  V  Q  E  L  L  L  G  G  G  E  W  I  L  V  K  E  F  K  F  Q  K  L  Q  L  K  Q  I  V  Q  A  S  D  *  D  L  L  S  V  Q  S  Y  N  K  T  V  *  E  V  T  *  M  V  S  *  T  K  N  F  L  H  I  R  K  W  C  N  Y  P  R  K  S  N  L  V  F  I  *  K  N  R  R  P   : V  *  R  K  D  W  D  V  N  L  L  T  I  N  S  R  F  P  *  R  C  L  L  L  I  Y  D  L  H  *  W  S  V  P  W  L  E  K  N  L  Q  *  A  M  F  V  L  S  C  Q  L  R  K  D  T  I  A  W  V  L  K  W  L  T  S  F  R :   G  D  L  L  D  Y  F  A  G  *  R  N  L  I  T  Q  E  D  S  K  S  Q  L  M  F  I  G  G  F  V  R :   A  F  P  E  H  *  L  I  T  Q  E  H  *  D  C  P  Y  I  Y  M  K  D  *  V  *  S  V  M  Q  K  S  S  L  K  I  V  E  *  L  H  Q  S  K :   K  *  L  N  A  L  T  C  P  R  R  K  S  E  M  Q  L  R :   Q  A  A  R  C  F  H  L  I  G  K  H  I  P  L  *  M  A  F  L  E  Q  H  F  I  A :   T  L  L  T  I  A  W  R  T  T  H  G  M  E  L  M  D  G  R  S  R :   M  K  *  T  I  S  F  L  Q  F  S  G  N  A  R  E  I  L  S  D  C  T  M  V  W  T  M  S  A  L  P  G  R  I  L  V  E   : G  *  V  Y  P  E  K  E  *  G  K  L  D  *  L  H  L  R  N  *  N  M  L  P  E  K  S  N  *  M  Q  C  W  L  N  I  E  Y  D  R  *  D  Q  T  T  N  E  L  Y  I  E  C  K  E  T  C  I  S  Y  F  I  F  L  M  R  R  T  D  E  D  Q  R  D  I  L  H  H  L  L  P  C  S  C  P  K  P  P  K  E  E  S  E  R  C  G  E  D  F  C  A  S  Y  I  L  G  C  I  C  V  Y  *  D  R  R  *  V  N  A  N  T  V  Y  M  F  S  V  L  T  Y  F  I  H  L  N  V  I  M  S  I  L  Y  D  V  S  *  *  K  T  Q  F  P  E  C  *  S  D  F  V  H   : N  K  K   </first_frame>
            <second_frame>  H  L  V  I  F  H  Q  Y  F  S  S  F  *  I  K  N  T  F  F  I  S  V  S  N  *  T  H  S  R  L  S  F  F  I  N  R  H  C  *  I  Q  :  K  L  E  K  G  G  *  I  P  E  S  I  *  L  L  V  I  T  H  Q  L  V  W  L  *  F  R  N  L  V  K  H  G  V  W  F  W  I  F  H  S  C  S  A  C  D  G  H  C  C  S  Y  R  T  L  C  R  K  *  N  L  K  L  V  F  L  L  F  *  S  D  *  K  V  S  L  *  W  *  S  C  F  D  L  Q  S  Y  E  K  C  D  Q  C  *  E  V  I  Q  L  *  R  W  L  C  F  Q  S  K  K  T  I  R  *  G  C  *  R  A  C  Q  H  C  L  *  S  F  *  C  G  A  N  G  *  N  V  K  K  T  A  E  *  K  L  Q  Q  R  R  S  G  G  G  S  S  S  S  A  E  I  Y  A  *  K  T  V  E  S  F  S  *  E  N  I  G  S  F  P  T  K  *  K  E  L  *  K  E  D  A  D  H  L  F  R  N  F  C  *  A  E  E  N  G  Y  S  *  K  S  S  N  S  K  S  F  S  *  S  K  *  C  K  Q  A  T  E  I  C  C  R  S  R  A  T  T  K  P  F  E  R  L  H  E  W  C  R  K  P  R  T  S  Y  T  *  G  S  G  A  T  I  Q  E  N  Q  I  W  S  L  F  R  R  T  E  G  Q  :  S  E  G  K  I  G  M  *  T  F  *  R  S  T  R  G  F  L  E  D  V  S  C  *  F  T  I  Y  I  N  G  V  F  L  G  *  R  K  T  C  N  E  Q  C  S  S  C  H  V  N  C  A  K  I  R  *  H  G  Y  *  N  G  *  P  H  S   : G  G  T  Y  W  T  T  S  R  D  R  E  I  *  S  L  K  R  I  Q  N  L  N  L  C  L  L  V  D  S  S   : G  R  F  P  S  I  S  *  *  L  K  N  I  E  I  A  H  T  S  T  *  K  T  E  F  D  P  *  C  K  S  Q  A  *  R  *  W  N  N  S  I  N  R   : K  N  S  *  M  P  *  H  V  P  E  E  S  Q  K  C  N  *   : G  K  Q  Q  G  V  F  T  *  *  G  S  I  S  L  F  K  W  P  S  W  S  N  T  S  *   : L  H  C  *  Q  S  P  G  E  Q  P  M  A  W  S  *  W  M  G  A  Q   : G  *  S  K  Q  S  H  F  F  N  S  Q  G  T  R  E  R  Y  Y  P  T  V  L  W  S  G  Q  *  V  P  Y  L  G  G  Y  *  *  K  :  D  R  F  I  Q  R  K  S  E  A  S  W  I  S  C  T  *  E  I  K  T  C  C  Q  K  K  A  I  R  C  N  V  G  *  T  L  S  M  I  V  E  T  K  L  Q  M  N  C  T  *  N  V  R  K  P  A  S  P  I  L  F  S  *  *  G  E  Q  M  K  I  K  G  T  F  F  T  I  Y  F  P  A  P  V  P  S  L  Q  K  K  S  Q  K  D  V  V  K  I  F  V  H  H  I  F  *  D  V  S  V  F  I  E  I  G  G  R  *  M  Q  I  L  Y  I  C  S  L  C  *  L  I  S  Y  T  *  M  *  *  C  P  F  Y  M  M  Y  L  D  E  K  H  S  F  Q  N  V  N  L  T  L  Y  T  :  I  K  K  </second_frame>
            <third_frame>   T  W  L  F  S  T  S  T  F  H  H  S  K  L  K  T  H  F  S  F  Q  L  A  T  E  H  T  H  A  Y  L  S  S  S  I  V  I  A  K  F  R :   S  L  R  R  E  V  K  F  Q  N  Q  Y  S  S  *  S  S  L  I  S  W  Y  G  C  D  S  E  T  L  L  N  T  V  C  G  F  G  F  F  I  V  V  A  L  V  M  A  I  A  A  V  I  G  P  Y  A  G  N  R  I  L  S  S  S  F  Y  Y  S  D  L  T  E  K  L  A  C  S  G  D  H  A  L  I  C  N  P  T  R  N  V  I  N  A  K  K  S  S  N  Y  S  A  G  Y  V  S  N  R  K  K  Q  S  V  K  A  V  K  E  H  V  N  I  A  S  N  H  S  D  V  E  P  M  V  E  M  L  K  K  L  Q  N  E  S  C  S  K  E  D  P  V  E  V  L  L  L  L  Q  K  S  M  L  E  K  Q  W  N  L  S  A  E  K  T  L  E  A  F  P  P  N  E  K  N  C  K  K  K  M  Q  I  T  C  S  G  T  S  A  R  R  R  R  M  D  T  R  K  R  V  Q  I  P  K  A  S  A  E  A  N  S  A  S  K  R  L  R  S  V  V  G  P  E  L  Q  Q  N  R  L  R  G  Y  M  N  G  V  V  N  Q  E  L  L  T  H  K  E  V  V  Q  L  S  K  K  I  K  F  G  L  Y  L  E  E  Q  K  A  S :   L  K  E  R  L  G  C  E  P  S  D  D  Q  L  A  V  S  L  K  M  S  L  A  D  L  R  S  T  L  M  E  C  S  L  A  R  E  K  L  A  M  S  N  V  R  L  V  M  S  I  A  Q  R  Y  D  S  M  G  T  E  M  A  D  L  I  Q  :  G  G  L  I  G  L  L  R  G  I  E  K  F  D  H  S  R  G  F  K  I  S  T  Y  V  Y  W  W  I  R  Q  :  G  V  S  R  A  L  V  D  N  S  R  T  L  R  L  P  I  H  L  H  E  R  L  S  L  I  R  N  A  K  V  K  L  K  D  S  G  I  T  P  S  I  E  :  K  I  A  E  C  L  N  M  S  Q  K  K  V  R  N  A  T  E  :  A  S  S  K  V  F  S  L  D  R  E  A  Y  P  S  L  N  G  L  P  G  A  T  L  H  S  :  Y  I  A  D  N  R  L  E  N  N  P  W  H  G  V  D  G  W  A  L  K  :  D  E  V  N  N  L  I  S  S  I  L  R  E  R  E  R  D  I  I  R  L  Y  Y  G  L  D  N  E  C  L  T  W  E  D  I  S  R  R :   I  G  L  S  R  E  R  V  R  Q  V  G  L  V  A  L  E  K  L  K  H  A  A  R  K  K  Q  L  D  A  M  L  V  K  H  *  V  *  S  L  R  P  N  Y  K  *  T  V  H  R  M  *  G  N  L  H  L  L  F  Y  F  L  D  E  E  N  R  *  R  S  K  G  H  S  S  P  S  T  S  L  L  L  S  Q  A  S  K  R  R  V  R  K  M  W  *  R  F  L  C  I  I  Y  F  R  M  Y  L  C  L  L  R  *  E  V  G  K  C  K  Y  C  I  Y  V  L  C  V  D  L  F  H  T  L  E  C  D  N  V  H  F  I  *  C  I  L  M  K  N  T  V  S  R  M  L  I  *  L  C  T  Q :   *  K  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0113N10.1" strand="-"/>
                <serials PGL_serial="18" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="95711" stop="94942"/>
                    <exon start="94232" stop="94034"/>
                    <exon start="93913" stop="93821"/>
                    <exon start="93711" stop="93583"/>
                    <exon start="93462" stop="93409"/>
                    <exon start="93333" stop="93256"/>
                    <exon start="93056" stop="92994"/>
                    <exon start="92138" stop="92026"/>
                    <exon start="91860" stop="91752"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1605</number_coding_nucleotides>
                  <number_encoded_amino_acids>535</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSLISWYGCDSETLLNTVCGFGFFIVVALVMAIAAVIGPYAGNRILSSSFYYSDLTEKLACSGDHALICNPTRNVINAKKSSNYSAGYVSNRKKQSVKAVKEHVNIASNHSDVEPMVEMLKKLQNESCSKEDPVEVLLLLQKSMLEKQWNLSAEKTLEAFPPNEKNCKKKMQITCSGTSARRRRMDTRKRVQIPKASAEANSASKRLRSVVGPELQQNRLRGYMNGVVNQELLTHKEVVQLSKKIKFGLYLEEQKASLKERLGCEPSDDQLAVSLKMSLADLRSTLMECSLAREKLAMSNVRLVMSIAQRYDSMGTEMADLIQGGLIGLLRGIEKFDHSRGFKISTYVYWWIRQGVSRALVDNSRTLRLPIHLHERLSLIRNAKVKLKDSGITPSIEKIAECLNMSQKKVRNATEASSKVFSLDREAYPSLNGLPGATLHSYIADNRLENNPWHGVDGWALKDEVNNLISSILRERERDIIRLYYGLDNECLTWEDISRRIGLSRERVRQVGLVALEKLKHAARKKQLDAMLVKH*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0113N10.1" strand="-"/>
                <serials PGL_serial="18" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="91738" stop="91529"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DQTTNELYIECKETCISYFIFLMRRTDEDQRDILHHLLPCSCPKPPKEESERCGEDFCASYILGCICVY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="96357" e_stop="96234"/>
            <exon e_start="95757" e_stop="94508"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.980" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="96357" e_stop="96234" e_length="124"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.980">
            <gDNA_intron_boundary i_start="96233" i_stop="95758" i_length="476"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="95757" e_stop="94508" e_length="1250"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96357" stop="96234"/>
              <exon start="95757" stop="95330"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314071" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96292" stop="96234"/>
              <exon start="95757" stop="95116"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E415141" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96292" stop="96234"/>
              <exon start="95757" stop="95330"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E475203" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96262" stop="96234"/>
              <exon start="95757" stop="95076"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320344" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95757" stop="95211"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E460501" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95757" stop="95257"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E470774" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95757" stop="95272"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E460785" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95757" stop="95345"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E470543" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95757" stop="95358"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E460776" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95514" stop="95101"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358137" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95251" stop="94508"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736481" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACACTTGGTTATTTTCCACCAGTACTTTTCATCATTCTAAATTAAAAACACATTTTTCATTTCAGTTAGCAACTGAACACACTCACGCTTATCTTTCTTCATCAATCGTCATTGCTAAATTCAG : AAGCTTGAGAAGGGAGGTTAAATTCCAGAATCAATATAGCTCTTAGTCATCACTCATCAGCTGGTATGGTTGTGATTCAGAAACCTTGTTAAACACGGTGTGTGGTTTTGGATTTTTCATAGTTGTAGCGCTTGTGATGGCCATTGCTGCAGTTATCGGACCCTATGCAGGAAATAGAATCTTAAGCTCGTCTTTCTATTATTCTGATCTGACTGAAAAGTTAGCTTGTAGTGGTGATCATGCTTTGATCTGCAATCCTACGAGAAATGTGATCAATGCTAAGAAGTCATCCAATTATAGCGCTGGTTATGTTTCCAATCGAAAAAAACAATCCGTTAAGGCTGTTAAAGAGCATGTCAACATTGCCTCTAATCATTCTGATGTGGAGCCAATGGTTGAAATGTTAAAAAAACTGCAGAATGAAAGCTGCAGCAAAGAAGATCCGGTGGAGGTTCTTCTTCTTCTGCAGAAATCTATGCTTGAAAAACAGTGGAATCTTTCAGCTGAGAAAACATTGGAAGCTTTCCCACCAAATGAAAAGAACTGTAAAAAGAAGATGCAGATCACTTGTTCAGGAACTTCTGCTAGGCGGAGGAGAATGGATACTCGTAAAAGAGTTCAAATTCCAAAAGCTTCAGCTGAAGCAAATAGTGCAAGCAAGCGACTGAGATCTGTTGTCGGTCCAGAGCTACAACAAAACCGTTTGAGAGGTTACATGAATGGTGTCGTAAACCAAGAACTTCTTACACATAAGGAAGTGGTGCAACTATCCAAGAAAATCAAATTTGGTCTTTATTTAGAAGAACAGAAGGCCAGGTACTAAACTCACAACTTCCTCCAACCGTGCCACCCTACTTTCTCAAACATCAGAACAGACTTTAGTAGCTGATCGTCTCTTCGGTGAAAATTACTATAAAGAACTTAAGAAATATTGTAGAAAGAGTGAGATAAACTGCATGAATTATATTTTTTACCCATGAGAAGCAGAGTCATGAGGTTAATCTTTCTCAAATACCCCATCCAAACGTTCTGTTCCGATATTGTCCAACTGCTTTTGATGTTTTCCTAAATACATTGCTTTCATAATATTGGAGGTCATGTTGCTGCCAATGTTTTAGTAGTGCTTGAAACTCATTATAAGAAAGAGTTAATAGCCTTTATGATTGCTGTGAGACTGAACCAGATTTAAGCCAGTCTTAATGTTGCTAATGGTAGCTAGCTTCCTTATCTAATAATAAATGAGGTATAAT</gDNA_template>
            <first_frame> T  L  G  Y  F  P  P  V  L  F  I  I  L  N  *  K  H  I  F  H  F  S  *  Q  L  N  T  L  T  L  I  F  L  H  Q  S  S  L  L  N  S   : E  A  *  E  G  R  L  N  S  R  I  N  I  A  L  S  H  H  S  S  A  G  M  V  V  I  Q  K  P  C  *  T  R  C  V  V  L  D  F  S  *  L  *  R  L  *  W  P  L  L  Q  L  S  D  P  M  Q  E  I  E  S  *  A  R  L  S  I  I  L  I  *  L  K  S  *  L  V  V  V  I  M  L  *  S  A  I  L  R  E  M  *  S  M  L  R  S  H  P  I  I  A  L  V  M  F  P  I  E  K  N  N  P  L  R  L  L  K  S  M  S  T  L  P  L  I  I  L  M  W  S  Q  W  L  K  C  *  K  N  C  R  M  K  A  A  A  K  K  I  R  W  R  F  F  F  F  C  R  N  L  C  L  K  N  S  G  I  F  Q  L  R  K  H  W  K  L  S  H  Q  M  K  R  T  V  K  R  R  C  R  S  L  V  Q  E  L  L  L  G  G  G  E  W  I  L  V  K  E  F  K  F  Q  K  L  Q  L  K  Q  I  V  Q  A  S  D  *  D  L  L  S  V  Q  S  Y  N  K  T  V  *  E  V  T  *  M  V  S  *  T  K  N  F  L  H  I  R  K  W  C  N  Y  P  R  K  S  N  L  V  F  I  *  K  N  R  R  P  G  T  K  L  T  T  S  S  N  R  A  T  L  L  S  Q  T  S  E  Q  T  L  V  A  D  R  L  F  G  E  N  Y  Y  K  E  L  K  K  Y  C  R  K  S  E  I  N  C  M  N  Y  I  F  Y  P  *  E  A  E  S  *  G  *  S  F  S  N  T  P  S  K  R  S  V  P  I  L  S  N  C  F  *  C  F  P  K  Y  I  A  F  I  I  L  E  V  M  L  L  P  M  F  *  *  C  L  K  L  I  I  R  K  S  *  *  P  L  *  L  L  *  D  *  T  R  F  K  P  V  L  M  L  L  M  V  A  S  F  L  I  *  *  *  M  R  Y  N </first_frame>
            <second_frame>  H  L  V  I  F  H  Q  Y  F  S  S  F  *  I  K  N  T  F  F  I  S  V  S  N  *  T  H  S  R  L  S  F  F  I  N  R  H  C  *  I  Q  :  K  L  E  K  G  G  *  I  P  E  S  I  *  L  L  V  I  T  H  Q  L  V  W  L  *  F  R  N  L  V  K  H  G  V  W  F  W  I  F  H  S  C  S  A  C  D  G  H  C  C  S  Y  R  T  L  C  R  K  *  N  L  K  L  V  F  L  L  F  *  S  D  *  K  V  S  L  *  W  *  S  C  F  D  L  Q  S  Y  E  K  C  D  Q  C  *  E  V  I  Q  L  *  R  W  L  C  F  Q  S  K  K  T  I  R  *  G  C  *  R  A  C  Q  H  C  L  *  S  F  *  C  G  A  N  G  *  N  V  K  K  T  A  E  *  K  L  Q  Q  R  R  S  G  G  G  S  S  S  S  A  E  I  Y  A  *  K  T  V  E  S  F  S  *  E  N  I  G  S  F  P  T  K  *  K  E  L  *  K  E  D  A  D  H  L  F  R  N  F  C  *  A  E  E  N  G  Y  S  *  K  S  S  N  S  K  S  F  S  *  S  K  *  C  K  Q  A  T  E  I  C  C  R  S  R  A  T  T  K  P  F  E  R  L  H  E  W  C  R  K  P  R  T  S  Y  T  *  G  S  G  A  T  I  Q  E  N  Q  I  W  S  L  F  R  R  T  E  G  Q  V  L  N  S  Q  L  P  P  T  V  P  P  Y  F  L  K  H  Q  N  R  L  *  *  L  I  V  S  S  V  K  I  T  I  K  N  L  R  N  I  V  E  R  V  R  *  T  A  *  I  I  F  F  T  H  E  K  Q  S  H  E  V  N  L  S  Q  I  P  H  P  N  V  L  F  R  Y  C  P  T  A  F  D  V  F  L  N  T  L  L  S  *  Y  W  R  S  C  C  C  Q  C  F  S  S  A  *  N  S  L  *  E  R  V  N  S  L  Y  D  C  C  E  T  E  P  D  L  S  Q  S  *  C  C  *  W  *  L  A  S  L  S  N  N  K  *  G  I   </second_frame>
            <third_frame>   T  W  L  F  S  T  S  T  F  H  H  S  K  L  K  T  H  F  S  F  Q  L  A  T  E  H  T  H  A  Y  L  S  S  S  I  V  I  A  K  F  R :   S  L  R  R  E  V  K  F  Q  N  Q  Y  S  S  *  S  S  L  I  S  W  Y  G  C  D  S  E  T  L  L  N  T  V  C  G  F  G  F  F  I  V  V  A  L  V  M  A  I  A  A  V  I  G  P  Y  A  G  N  R  I  L  S  S  S  F  Y  Y  S  D  L  T  E  K  L  A  C  S  G  D  H  A  L  I  C  N  P  T  R  N  V  I  N  A  K  K  S  S  N  Y  S  A  G  Y  V  S  N  R  K  K  Q  S  V  K  A  V  K  E  H  V  N  I  A  S  N  H  S  D  V  E  P  M  V  E  M  L  K  K  L  Q  N  E  S  C  S  K  E  D  P  V  E  V  L  L  L  L  Q  K  S  M  L  E  K  Q  W  N  L  S  A  E  K  T  L  E  A  F  P  P  N  E  K  N  C  K  K  K  M  Q  I  T  C  S  G  T  S  A  R  R  R  R  M  D  T  R  K  R  V  Q  I  P  K  A  S  A  E  A  N  S  A  S  K  R  L  R  S  V  V  G  P  E  L  Q  Q  N  R  L  R  G  Y  M  N  G  V  V  N  Q  E  L  L  T  H  K  E  V  V  Q  L  S  K  K  I  K  F  G  L  Y  L  E  E  Q  K  A  R  Y  *  T  H  N  F  L  Q  P  C  H  P  T  F  S  N  I  R  T  D  F  S  S  *  S  S  L  R  *  K  L  L  *  R  T  *  E  I  L  *  K  E  *  D  K  L  H  E  L  Y  F  L  P  M  R  S  R  V  M  R  L  I  F  L  K  Y  P  I  Q  T  F  C  S  D  I  V  Q  L  L  L  M  F  S  *  I  H  C  F  H  N  I  G  G  H  V  A  A  N  V  L  V  V  L  E  T  H  Y  K  K  E  L  I  A  F  M  I  A  V  R  L  N  Q  I  *  A  S  L  N  V  A  N  G  S  *  L  P  Y  L  I  I  N  E  V  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0113N10.1" strand="-"/>
                <serials PGL_serial="18" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="95711" stop="94935"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>774</number_coding_nucleotides>
                  <number_encoded_amino_acids>258</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSLISWYGCDSETLLNTVCGFGFFIVVALVMAIAAVIGPYAGNRILSSSFYYSDLTEKLACSGDHALICNPTRNVINAKKSSNYSAGYVSNRKKQSVKAVKEHVNIASNHSDVEPMVEMLKKLQNESCSKEDPVEVLLLLQKSMLEKQWNLSAEKTLEAFPPNEKNCKKKMQITCSGTSARRRRMDTRKRVQIPKASAEANSASKRLRSVVGPELQQNRLRGYMNGVVNQELLTHKEVVQLSKKIKFGLYLEEQKARY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="95075" e_stop="94942"/>
            <exon e_start="94232" e_stop="94034"/>
            <exon e_start="93932" e_stop="93821"/>
            <exon e_start="93711" e_stop="93583"/>
            <exon e_start="93462" e_stop="93409"/>
            <exon e_start="93333" e_stop="93256"/>
            <exon e_start="93056" e_stop="92994"/>
            <exon e_start="92138" e_stop="92026"/>
            <exon e_start="91860" e_stop="91383"/>
            <exon e_start="91280" e_stop="91273"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.877" acc_prob="0.628" e_score="0.985"/>
          <exon-intron don_prob="0.992" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.888" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.970" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.963" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.722" e_score="0.908"/>
          <exon-only e_score="0.875"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.985">
            <gDNA_exon_boundary e_start="95075" e_stop="94942" e_length="134"/>
          </exon>
          <intron i_serial="1" don_prob="0.877" acc_prob="0.628">
            <gDNA_intron_boundary i_start="94941" i_stop="94233" i_length="709"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="94232" e_stop="94034" e_length="199"/>
          </exon>
          <intron i_serial="2" don_prob="0.992" acc_prob="0.000">
            <gDNA_intron_boundary i_start="94033" i_stop="93933" i_length="101"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="93932" e_stop="93821" e_length="112"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.888">
            <gDNA_intron_boundary i_start="93820" i_stop="93712" i_length="109"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="93711" e_stop="93583" e_length="129"/>
          </exon>
          <intron i_serial="4" don_prob="0.988" acc_prob="0.982">
            <gDNA_intron_boundary i_start="93582" i_stop="93463" i_length="120"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="93462" e_stop="93409" e_length="54"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.970">
            <gDNA_intron_boundary i_start="93408" i_stop="93334" i_length="75"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="93333" e_stop="93256" e_length="78"/>
          </exon>
          <intron i_serial="6" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="93255" i_stop="93057" i_length="199"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="93056" e_stop="92994" e_length="63"/>
          </exon>
          <intron i_serial="7" don_prob="1.000" acc_prob="0.963">
            <gDNA_intron_boundary i_start="92993" i_stop="92139" i_length="855"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="92138" e_stop="92026" e_length="113"/>
          </exon>
          <intron i_serial="8" don_prob="0.993" acc_prob="0.999">
            <gDNA_intron_boundary i_start="92025" i_stop="91861" i_length="165"/>
          </intron>
          <exon e_serial="9" e_score="0.908">
            <gDNA_exon_boundary e_start="91860" e_stop="91383" e_length="478"/>
          </exon>
          <intron i_serial="9" don_prob="0.000" acc_prob="0.722">
            <gDNA_intron_boundary i_start="91382" i_stop="91281" i_length="102"/>
          </intron>
          <exon e_serial="10" e_score="0.875">
            <gDNA_exon_boundary e_start="91280" e_stop="91273" e_length="8"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95075" stop="94942"/>
              <exon start="94232" stop="94034"/>
              <exon start="93932" stop="93821"/>
              <exon start="93711" stop="93583"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321075" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93858" stop="93821"/>
              <exon start="93711" stop="93583"/>
              <exon start="93462" stop="93409"/>
              <exon start="93333" stop="93256"/>
              <exon start="93056" stop="92994"/>
              <exon start="92138" stop="92050"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E479234" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93697" stop="93583"/>
              <exon start="93462" stop="93409"/>
              <exon start="93333" stop="93256"/>
              <exon start="93056" stop="92994"/>
              <exon start="92138" stop="92026"/>
              <exon start="91860" stop="91744"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E610948" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93602" stop="93583"/>
              <exon start="93462" stop="93409"/>
              <exon start="93333" stop="93256"/>
              <exon start="93056" stop="92994"/>
              <exon start="92138" stop="92026"/>
              <exon start="91860" stop="91795"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279833" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93437" stop="93409"/>
              <exon start="93333" stop="93256"/>
              <exon start="93056" stop="92994"/>
              <exon start="92138" stop="92026"/>
              <exon start="91860" stop="91425"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733632" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93019" stop="92994"/>
              <exon start="92138" stop="92026"/>
              <exon start="91860" stop="91383"/>
              <exon start="91280" stop="91273"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E415142" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92090" stop="92026"/>
              <exon start="91860" stop="91436"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E622311" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91823" stop="91384"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E467791" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCAGAGCTACAACAAAACCGTTTGAGAGGTTACATGAATGGTGTCGTAAACCAAGAACTTCTTACACATAAGGAAGTGGTGCAACTATCCAAGAAAATCAAATTTGGTCTTTATTTAGAAGAACAGAAGGCCAG : TCTGAAGGAAAGATTGGGATGTGAACCTTCTGACGATCAACTCGCGGTTTCCTTGAAGATGTCTCTTGCTGATTTACGATCTACATTAATGGAGTGTTCCTTGGCTAGAGAAAAACTTGCAATGAGCAATGTTCGTCTTGTCATGTCAATTGCGCAAAGATACGATAGCATGGGTACTGAAATGGCTGACCTCATTCAG : TTCCCTCATATGCATGTAGGGGGGACTTATTGGACTACTTCGCGGGATAGAGAAATTTGATCACTCAAGAGGATTCAAAATCTCAACTTATGTTTATTGGTGGATTCGTCAG : GGCGTTTCCCGAGCATTAGTTGATAACTCAAGAACATTGAGATTGCCCATACATCTACATGAAAGACTGAGTTTGATCCGTAATGCAAAAGTCAAGCTTAAAGATAGTGGAATAACTCCATCAATCGAA : AAAATAGCTGAATGCCTTAACATGTCCCAGAAGAAAGTCAGAAATGCAACTGAG : GCAAGCAGCAAGGTGTTTTCACTTGATAGGGAAGCATATCCCTCTTTAAATGGCCTTCCTGGAGCAACACTTCATAGC : TACATTGCTGACAATCGCCTGGAGAACAACCCATGGCATGGAGTTGATGGATGGGCGCTCAAG : GATGAAGTAAACAATCTCATTTCTTCAATTCTCAGGGAACGCGAGAGAGATATTATCCGACTGTACTATGGTCTGGACAATGAGTGCCTTACCTGGGAGGATATTAGTAGAAG : GATAGGTTTATCCAGAGAAAGAGTGAGGCAAGTTGGATTAGTTGCACTTGAGAAATTAAAACATGCTGCCAGAAAAAAGCAATTAGATGCAATGTTGGTTAAACATTGAGTATGATCGTTGAGACCAAACTACAAATGAACTGTACATAGAATGTAAGGAAACCTGCATCTCCTATTTTATTTTCTTGATGAGGAGAACAGATGAAGATCAAAGGGACATTCTTCACCATCTACTTCCCTGCTCCTGTCCCAAGCCTCCAAAAGAAGAGTCAGAAAGATGTGGTGAAGATTTTTGTGCATCATATATTTTAGGATGTATCTGTGTTTATTGAGATAGGAGGTAGGTAAATGCAAATACTGTATATATGTTCTCTGTGTTGACTTATTTCATACACTTGAATGTGATAATGTCCATTTTATATGATGTATCTTGATGAAAAACACAGTTTCCAGAATGTTAATCTGACTTTGTACACAA : ATAAAAAA</gDNA_template>
            <first_frame> P  E  L  Q  Q  N  R  L  R  G  Y  M  N  G  V  V  N  Q  E  L  L  T  H  K  E  V  V  Q  L  S  K  K  I  K  F  G  L  Y  L  E  E  Q  K  A  S :   L  K  E  R  L  G  C  E  P  S  D  D  Q  L  A  V  S  L  K  M  S  L  A  D  L  R  S  T  L  M  E  C  S  L  A  R  E  K  L  A  M  S  N  V  R  L  V  M  S  I  A  Q  R  Y  D  S  M  G  T  E  M  A  D  L  I  Q  :  F  P  H  M  H  V  G  G  T  Y  W  T  T  S  R  D  R  E  I  *  S  L  K  R  I  Q  N  L  N  L  C  L  L  V  D  S  S   : G  R  F  P  S  I  S  *  *  L  K  N  I  E  I  A  H  T  S  T  *  K  T  E  F  D  P  *  C  K  S  Q  A  *  R  *  W  N  N  S  I  N  R   : K  N  S  *  M  P  *  H  V  P  E  E  S  Q  K  C  N  *   : G  K  Q  Q  G  V  F  T  *  *  G  S  I  S  L  F  K  W  P  S  W  S  N  T  S  *   : L  H  C  *  Q  S  P  G  E  Q  P  M  A  W  S  *  W  M  G  A  Q   : G  *  S  K  Q  S  H  F  F  N  S  Q  G  T  R  E  R  Y  Y  P  T  V  L  W  S  G  Q  *  V  P  Y  L  G  G  Y  *  *  K  :  D  R  F  I  Q  R  K  S  E  A  S  W  I  S  C  T  *  E  I  K  T  C  C  Q  K  K  A  I  R  C  N  V  G  *  T  L  S  M  I  V  E  T  K  L  Q  M  N  C  T  *  N  V  R  K  P  A  S  P  I  L  F  S  *  *  G  E  Q  M  K  I  K  G  T  F  F  T  I  Y  F  P  A  P  V  P  S  L  Q  K  K  S  Q  K  D  V  V  K  I  F  V  H  H  I  F  *  D  V  S  V  F  I  E  I  G  G  R  *  M  Q  I  L  Y  I  C  S  L  C  *  L  I  S  Y  T  *  M  *  *  C  P  F  Y  M  M  Y  L  D  E  K  H  S  F  Q  N  V  N  L  T  L  Y  T   : N  K  K </first_frame>
            <second_frame>  Q  S  Y  N  K  T  V  *  E  V  T  *  M  V  S  *  T  K  N  F  L  H  I  R  K  W  C  N  Y  P  R  K  S  N  L  V  F  I  *  K  N  R  R  P   : V  *  R  K  D  W  D  V  N  L  L  T  I  N  S  R  F  P  *  R  C  L  L  L  I  Y  D  L  H  *  W  S  V  P  W  L  E  K  N  L  Q  *  A  M  F  V  L  S  C  Q  L  R  K  D  T  I  A  W  V  L  K  W  L  T  S  F  S :   S  L  I  C  M  *  G  G  L  I  G  L  L  R  G  I  E  K  F  D  H  S  R  G  F  K  I  S  T  Y  V  Y  W  W  I  R  Q  :  G  V  S  R  A  L  V  D  N  S  R  T  L  R  L  P  I  H  L  H  E  R  L  S  L  I  R  N  A  K  V  K  L  K  D  S  G  I  T  P  S  I  E  :  K  I  A  E  C  L  N  M  S  Q  K  K  V  R  N  A  T  E  :  A  S  S  K  V  F  S  L  D  R  E  A  Y  P  S  L  N  G  L  P  G  A  T  L  H  S  :  Y  I  A  D  N  R  L  E  N  N  P  W  H  G  V  D  G  W  A  L  K  :  D  E  V  N  N  L  I  S  S  I  L  R  E  R  E  R  D  I  I  R  L  Y  Y  G  L  D  N  E  C  L  T  W  E  D  I  S  R  R :   I  G  L  S  R  E  R  V  R  Q  V  G  L  V  A  L  E  K  L  K  H  A  A  R  K  K  Q  L  D  A  M  L  V  K  H  *  V  *  S  L  R  P  N  Y  K  *  T  V  H  R  M  *  G  N  L  H  L  L  F  Y  F  L  D  E  E  N  R  *  R  S  K  G  H  S  S  P  S  T  S  L  L  L  S  Q  A  S  K  R  R  V  R  K  M  W  *  R  F  L  C  I  I  Y  F  R  M  Y  L  C  L  L  R  *  E  V  G  K  C  K  Y  C  I  Y  V  L  C  V  D  L  F  H  T  L  E  C  D  N  V  H  F  I  *  C  I  L  M  K  N  T  V  S  R  M  L  I  *  L  C  T  Q  :  I  K   </second_frame>
            <third_frame>   R  A  T  T  K  P  F  E  R  L  H  E  W  C  R  K  P  R  T  S  Y  T  *  G  S  G  A  T  I  Q  E  N  Q  I  W  S  L  F  R  R  T  E  G  Q  :  S  E  G  K  I  G  M  *  T  F  *  R  S  T  R  G  F  L  E  D  V  S  C  *  F  T  I  Y  I  N  G  V  F  L  G  *  R  K  T  C  N  E  Q  C  S  S  C  H  V  N  C  A  K  I  R  *  H  G  Y  *  N  G  *  P  H  S   : V  P  S  Y  A  C  R  G  D  L  L  D  Y  F  A  G  *  R  N  L  I  T  Q  E  D  S  K  S  Q  L  M  F  I  G  G  F  V  R :   A  F  P  E  H  *  L  I  T  Q  E  H  *  D  C  P  Y  I  Y  M  K  D  *  V  *  S  V  M  Q  K  S  S  L  K  I  V  E  *  L  H  Q  S  K :   K  *  L  N  A  L  T  C  P  R  R  K  S  E  M  Q  L  R :   Q  A  A  R  C  F  H  L  I  G  K  H  I  P  L  *  M  A  F  L  E  Q  H  F  I  A :   T  L  L  T  I  A  W  R  T  T  H  G  M  E  L  M  D  G  R  S  R :   M  K  *  T  I  S  F  L  Q  F  S  G  N  A  R  E  I  L  S  D  C  T  M  V  W  T  M  S  A  L  P  G  R  I  L  V  E   : G  *  V  Y  P  E  K  E  *  G  K  L  D  *  L  H  L  R  N  *  N  M  L  P  E  K  S  N  *  M  Q  C  W  L  N  I  E  Y  D  R  *  D  Q  T  T  N  E  L  Y  I  E  C  K  E  T  C  I  S  Y  F  I  F  L  M  R  R  T  D  E  D  Q  R  D  I  L  H  H  L  L  P  C  S  C  P  K  P  P  K  E  E  S  E  R  C  G  E  D  F  C  A  S  Y  I  L  G  C  I  C  V  Y  *  D  R  R  *  V  N  A  N  T  V  Y  M  F  S  V  L  T  Y  F  I  H  L  N  V  I  M  S  I  L  Y  D  V  S  *  *  K  T  Q  F  P  E  C  *  S  D  F  V  H  K :   *  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0113N10.1" strand="-"/>
                <serials PGL_serial="18" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="93913" stop="93821"/>
                    <exon start="93711" stop="93583"/>
                    <exon start="93462" stop="93409"/>
                    <exon start="93333" stop="93256"/>
                    <exon start="93056" stop="92994"/>
                    <exon start="92138" stop="92026"/>
                    <exon start="91860" stop="91752"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>636</number_coding_nucleotides>
                  <number_encoded_amino_acids>212</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GGLIGLLRGIEKFDHSRGFKISTYVYWWIRQGVSRALVDNSRTLRLPIHLHERLSLIRNAKVKLKDSGITPSIEKIAECLNMSQKKVRNATEASSKVFSLDREAYPSLNGLPGATLHSYIADNRLENNPWHGVDGWALKDEVNNLISSILRERERDIIRLYYGLDNECLTWEDISRRIGLSRERVRQVGLVALEKLKHAARKKQLDAMLVKH*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0113N10.1" strand="-"/>
                <serials PGL_serial="18" AGS_serial="4" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="91738" stop="91529"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DQTTNELYIECKETCISYFIFLMRRTDEDQRDILHHLLPCSCPKPPKEESERCGEDFCASYILGCICVY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="96304" e_stop="96234"/>
            <exon e_start="95754" e_stop="94508"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.496" e_score="0.817"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.817">
            <gDNA_exon_boundary e_start="96304" e_stop="96234" e_length="71"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.496">
            <gDNA_intron_boundary i_start="96233" i_stop="95755" i_length="479"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="95754" e_stop="94508" e_length="1247"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96304" stop="96234"/>
              <exon start="95754" stop="95212"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E467522" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95514" stop="95101"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358137" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95251" stop="94508"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736481" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="5" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTTCATTTCAGTTAGCAACTGAACACACTCACGCTTATCTTTCTTCATCAATCGTCATTGCTAAATTCAG : CTTGAGAAGGGAGGTTAAATTCCAGAATCAATATAGCTCTTAGTCATCACTCATCAGCTGGTATGGTTGTGATTCAGAAACCTTGTTAAACACGGTGTGTGGTTTTGGATTTTTCATAGTTGTAGCGCTTGTGATGGCCATTGCTGCAGTTATCGGACCCTATGCAGGAAATAGAATCTTAAGCTCGTCTTTCTATTATTCTGATCTGACTGAAAAGTTAGCTTGTAGTGGTGATCATGCTTTGATCTGCAATCCTACGAGAAATGTGATCAATGCTAAGAAGTCATCCAATTATAGCGCTGGTTATGTTTCCAATCGAAAAAAACAATCCGTTAAGGCTGTTAAAGAGCATGTCAACATTGCCTCTAATCATTCTGATGTGGAGCCAATGGTTGAAATGTTAAAAAAACTGCAGAATGAAAGCTGCAGCAAAGAAGATCCGGTGGAGGTTCTTCTTCTTCTGCAGAAATCTATGCTTGAAAAACAGTGGAATCTTTCAGCTGAGAAAACATTGGAAGCTTTCCCACCAAATGAAAAGAACTGTAAAAAGAAGATGCAGATCACTTGTTCAGGAACTTCTGCTAGGCGGAGGAGAATGGATACTCGTAAAAGAGTTCAAATTCCAAAAGCTTCAGCTGAAGCAAATAGTGCAAGCAAGCGACTGAGATCTGTTGTCGGTCCAGAGCTACAACAAAACCGTTTGAGAGGTTACATGAATGGTGTCGTAAACCAAGAACTTCTTACACATAAGGAAGTGGTGCAACTATCCAAGAAAATCAAATTTGGTCTTTATTTAGAAGAACAGAAGGCCAGGTACTAAACTCACAACTTCCTCCAACCGTGCCACCCTACTTTCTCAAACATCAGAACAGACTTTAGTAGCTGATCGTCTCTTCGGTGAAAATTACTATAAAGAACTTAAGAAATATTGTAGAAAGAGTGAGATAAACTGCATGAATTATATTTTTTACCCATGAGAAGCAGAGTCATGAGGTTAATCTTTCTCAAATACCCCATCCAAACGTTCTGTTCCGATATTGTCCAACTGCTTTTGATGTTTTCCTAAATACATTGCTTTCATAATATTGGAGGTCATGTTGCTGCCAATGTTTTAGTAGTGCTTGAAACTCATTATAAGAAAGAGTTAATAGCCTTTATGATTGCTGTGAGACTGAACCAGATTTAAGCCAGTCTTAATGTTGCTAATGGTAGCTAGCTTCCTTATCTAATAATAAATGAGGTATAAT</gDNA_template>
            <first_frame> F  S  F  Q  L  A  T  E  H  T  H  A  Y  L  S  S  S  I  V  I  A  K  F  S :   L  R  R  E  V  K  F  Q  N  Q  Y  S  S  *  S  S  L  I  S  W  Y  G  C  D  S  E  T  L  L  N  T  V  C  G  F  G  F  F  I  V  V  A  L  V  M  A  I  A  A  V  I  G  P  Y  A  G  N  R  I  L  S  S  S  F  Y  Y  S  D  L  T  E  K  L  A  C  S  G  D  H  A  L  I  C  N  P  T  R  N  V  I  N  A  K  K  S  S  N  Y  S  A  G  Y  V  S  N  R  K  K  Q  S  V  K  A  V  K  E  H  V  N  I  A  S  N  H  S  D  V  E  P  M  V  E  M  L  K  K  L  Q  N  E  S  C  S  K  E  D  P  V  E  V  L  L  L  L  Q  K  S  M  L  E  K  Q  W  N  L  S  A  E  K  T  L  E  A  F  P  P  N  E  K  N  C  K  K  K  M  Q  I  T  C  S  G  T  S  A  R  R  R  R  M  D  T  R  K  R  V  Q  I  P  K  A  S  A  E  A  N  S  A  S  K  R  L  R  S  V  V  G  P  E  L  Q  Q  N  R  L  R  G  Y  M  N  G  V  V  N  Q  E  L  L  T  H  K  E  V  V  Q  L  S  K  K  I  K  F  G  L  Y  L  E  E  Q  K  A  R  Y  *  T  H  N  F  L  Q  P  C  H  P  T  F  S  N  I  R  T  D  F  S  S  *  S  S  L  R  *  K  L  L  *  R  T  *  E  I  L  *  K  E  *  D  K  L  H  E  L  Y  F  L  P  M  R  S  R  V  M  R  L  I  F  L  K  Y  P  I  Q  T  F  C  S  D  I  V  Q  L  L  L  M  F  S  *  I  H  C  F  H  N  I  G  G  H  V  A  A  N  V  L  V  V  L  E  T  H  Y  K  K  E  L  I  A  F  M  I  A  V  R  L  N  Q  I  *  A  S  L  N  V  A  N  G  S  *  L  P  Y  L  I  I  N  E  V  *  </first_frame>
            <second_frame>  F  H  F  S  *  Q  L  N  T  L  T  L  I  F  L  H  Q  S  S  L  L  N  S   : A  *  E  G  R  L  N  S  R  I  N  I  A  L  S  H  H  S  S  A  G  M  V  V  I  Q  K  P  C  *  T  R  C  V  V  L  D  F  S  *  L  *  R  L  *  W  P  L  L  Q  L  S  D  P  M  Q  E  I  E  S  *  A  R  L  S  I  I  L  I  *  L  K  S  *  L  V  V  V  I  M  L  *  S  A  I  L  R  E  M  *  S  M  L  R  S  H  P  I  I  A  L  V  M  F  P  I  E  K  N  N  P  L  R  L  L  K  S  M  S  T  L  P  L  I  I  L  M  W  S  Q  W  L  K  C  *  K  N  C  R  M  K  A  A  A  K  K  I  R  W  R  F  F  F  F  C  R  N  L  C  L  K  N  S  G  I  F  Q  L  R  K  H  W  K  L  S  H  Q  M  K  R  T  V  K  R  R  C  R  S  L  V  Q  E  L  L  L  G  G  G  E  W  I  L  V  K  E  F  K  F  Q  K  L  Q  L  K  Q  I  V  Q  A  S  D  *  D  L  L  S  V  Q  S  Y  N  K  T  V  *  E  V  T  *  M  V  S  *  T  K  N  F  L  H  I  R  K  W  C  N  Y  P  R  K  S  N  L  V  F  I  *  K  N  R  R  P  G  T  K  L  T  T  S  S  N  R  A  T  L  L  S  Q  T  S  E  Q  T  L  V  A  D  R  L  F  G  E  N  Y  Y  K  E  L  K  K  Y  C  R  K  S  E  I  N  C  M  N  Y  I  F  Y  P  *  E  A  E  S  *  G  *  S  F  S  N  T  P  S  K  R  S  V  P  I  L  S  N  C  F  *  C  F  P  K  Y  I  A  F  I  I  L  E  V  M  L  L  P  M  F  *  *  C  L  K  L  I  I  R  K  S  *  *  P  L  *  L  L  *  D  *  T  R  F  K  P  V  L  M  L  L  M  V  A  S  F  L  I  *  *  *  M  R  Y  N </second_frame>
            <third_frame>   F  I  S  V  S  N  *  T  H  S  R  L  S  F  F  I  N  R  H  C  *  I  Q  :  L  E  K  G  G  *  I  P  E  S  I  *  L  L  V  I  T  H  Q  L  V  W  L  *  F  R  N  L  V  K  H  G  V  W  F  W  I  F  H  S  C  S  A  C  D  G  H  C  C  S  Y  R  T  L  C  R  K  *  N  L  K  L  V  F  L  L  F  *  S  D  *  K  V  S  L  *  W  *  S  C  F  D  L  Q  S  Y  E  K  C  D  Q  C  *  E  V  I  Q  L  *  R  W  L  C  F  Q  S  K  K  T  I  R  *  G  C  *  R  A  C  Q  H  C  L  *  S  F  *  C  G  A  N  G  *  N  V  K  K  T  A  E  *  K  L  Q  Q  R  R  S  G  G  G  S  S  S  S  A  E  I  Y  A  *  K  T  V  E  S  F  S  *  E  N  I  G  S  F  P  T  K  *  K  E  L  *  K  E  D  A  D  H  L  F  R  N  F  C  *  A  E  E  N  G  Y  S  *  K  S  S  N  S  K  S  F  S  *  S  K  *  C  K  Q  A  T  E  I  C  C  R  S  R  A  T  T  K  P  F  E  R  L  H  E  W  C  R  K  P  R  T  S  Y  T  *  G  S  G  A  T  I  Q  E  N  Q  I  W  S  L  F  R  R  T  E  G  Q  V  L  N  S  Q  L  P  P  T  V  P  P  Y  F  L  K  H  Q  N  R  L  *  *  L  I  V  S  S  V  K  I  T  I  K  N  L  R  N  I  V  E  R  V  R  *  T  A  *  I  I  F  F  T  H  E  K  Q  S  H  E  V  N  L  S  Q  I  P  H  P  N  V  L  F  R  Y  C  P  T  A  F  D  V  F  L  N  T  L  L  S  *  Y  W  R  S  C  C  C  Q  C  F  S  S  A  *  N  S  L  *  E  R  V  N  S  L  Y  D  C  C  E  T  E  P  D  L  S  Q  S  *  C  C  *  W  *  L  A  S  L  S  N  N  K  *  G  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0113N10.1" strand="-"/>
                <serials PGL_serial="18" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="95711" stop="94935"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>774</number_coding_nucleotides>
                  <number_encoded_amino_acids>258</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSLISWYGCDSETLLNTVCGFGFFIVVALVMAIAAVIGPYAGNRILSSSFYYSDLTEKLACSGDHALICNPTRNVINAKKSSNYSAGYVSNRKKQSVKAVKEHVNIASNHSDVEPMVEMLKKLQNESCSKEDPVEVLLLLQKSMLEKQWNLSAEKTLEAFPPNEKNCKKKMQITCSGTSARRRRMDTRKRVQIPKASAEANSASKRLRSVVGPELQQNRLRGYMNGVVNQELLTHKEVVQLSKKIKFGLYLEEQKARY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="+" PGL_start="105478" PGL_stop="107825"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="105478" e_stop="105625"/>
            <exon e_start="105726" e_stop="105954"/>
            <exon e_start="106028" e_stop="106242"/>
            <exon e_start="106336" e_stop="106423"/>
            <exon e_start="107076" e_stop="107825"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.776" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.989" e_score="1.000"/>
          <exon-only e_score="0.927"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="105478" e_stop="105625" e_length="148"/>
          </exon>
          <intron i_serial="1" don_prob="0.776" acc_prob="0.989">
            <gDNA_intron_boundary i_start="105626" i_stop="105725" i_length="100"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="105726" e_stop="105954" e_length="229"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="105955" i_stop="106027" i_length="73"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="106028" e_stop="106242" e_length="215"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.994">
            <gDNA_intron_boundary i_start="106243" i_stop="106335" i_length="93"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="106336" e_stop="106423" e_length="88"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.989">
            <gDNA_intron_boundary i_start="106424" i_stop="107075" i_length="652"/>
          </intron>
          <exon e_serial="5" e_score="0.927">
            <gDNA_exon_boundary e_start="107076" e_stop="107825" e_length="750"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105478" stop="105625"/>
              <exon start="105726" stop="105954"/>
              <exon start="106028" stop="106242"/>
              <exon start="106336" stop="106361"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345450" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105480" stop="105625"/>
              <exon start="105726" stop="105954"/>
              <exon start="106028" stop="106242"/>
              <exon start="106336" stop="106423"/>
              <exon start="107076" stop="107104"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315927" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105484" stop="105625"/>
              <exon start="105726" stop="105954"/>
              <exon start="106028" stop="106242"/>
              <exon start="106336" stop="106384"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E454531" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105485" stop="105625"/>
              <exon start="105726" stop="105954"/>
              <exon start="106028" stop="106242"/>
              <exon start="106336" stop="106423"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E451447" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105485" stop="105625"/>
              <exon start="105726" stop="105954"/>
              <exon start="106028" stop="106242"/>
              <exon start="106336" stop="106371"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E448218" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105491" stop="105625"/>
              <exon start="105726" stop="105954"/>
              <exon start="106028" stop="106242"/>
              <exon start="106336" stop="106375"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E418177" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105491" stop="105625"/>
              <exon start="105726" stop="105954"/>
              <exon start="106028" stop="106145"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E441117" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105491" stop="105625"/>
              <exon start="105726" stop="105954"/>
              <exon start="106028" stop="106144"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E441306" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105492" stop="105625"/>
              <exon start="105726" stop="105954"/>
              <exon start="106028" stop="106242"/>
              <exon start="106336" stop="106387"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E456457" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105492" stop="105625"/>
              <exon start="105726" stop="105954"/>
              <exon start="106028" stop="106242"/>
              <exon start="106336" stop="106384"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E455295" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105495" stop="105625"/>
              <exon start="105726" stop="105954"/>
              <exon start="106028" stop="106242"/>
              <exon start="106336" stop="106419"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E456294" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105515" stop="105625"/>
              <exon start="105726" stop="105954"/>
              <exon start="106028" stop="106242"/>
              <exon start="106336" stop="106423"/>
              <exon start="107076" stop="107301"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701459" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105535" stop="105625"/>
              <exon start="105726" stop="105954"/>
              <exon start="106028" stop="106242"/>
              <exon start="106336" stop="106346"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E564037" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105564" stop="105625"/>
              <exon start="105726" stop="105954"/>
              <exon start="106028" stop="106242"/>
              <exon start="106336" stop="106423"/>
              <exon start="107076" stop="107110"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E583415" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105613" stop="105625"/>
              <exon start="105726" stop="105954"/>
              <exon start="106028" stop="106242"/>
              <exon start="106336" stop="106423"/>
              <exon start="107076" stop="107122"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E581880" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105861" stop="105954"/>
              <exon start="106028" stop="106242"/>
              <exon start="106336" stop="106423"/>
              <exon start="107076" stop="107260"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266146" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105869" stop="105954"/>
              <exon start="106028" stop="106242"/>
              <exon start="106336" stop="106423"/>
              <exon start="107076" stop="107261"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E537674" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105894" stop="105954"/>
              <exon start="106028" stop="106242"/>
              <exon start="106336" stop="106423"/>
              <exon start="107076" stop="107263"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217429" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105927" stop="105954"/>
              <exon start="106028" stop="106242"/>
              <exon start="106336" stop="106423"/>
              <exon start="107076" stop="107250"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E456766" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106074" stop="106242"/>
              <exon start="106336" stop="106423"/>
              <exon start="107076" stop="107263"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227575" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106076" stop="106242"/>
              <exon start="106336" stop="106423"/>
              <exon start="107076" stop="107264"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227356" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106077" stop="106242"/>
              <exon start="106336" stop="106423"/>
              <exon start="107076" stop="107263"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217336" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106078" stop="106242"/>
              <exon start="106336" stop="106423"/>
              <exon start="107076" stop="107263"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227458" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106101" stop="106242"/>
              <exon start="106336" stop="106423"/>
              <exon start="107076" stop="107263"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228625" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106159" stop="106242"/>
              <exon start="106336" stop="106423"/>
              <exon start="107076" stop="107263"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220244" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106183" stop="106242"/>
              <exon start="106336" stop="106423"/>
              <exon start="107076" stop="107263"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220670" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106344" stop="106423"/>
              <exon start="107076" stop="107553"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E582694" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106350" stop="106423"/>
              <exon start="107076" stop="107624"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E591643" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106381" stop="106423"/>
              <exon start="107076" stop="107266"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217535" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106401" stop="106423"/>
              <exon start="107076" stop="107825"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E584982" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107174" stop="107824"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E452871" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107358" stop="107796"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E600177" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107467" stop="107817"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E586520" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107478" stop="107807"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E587152" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGAGTGAGTGAGTGCTCTTTCTCCCTTAGATCTGATGCTCCATCACTAGACCACTTCCCCCCTTTTCCTTTTCTCCATAAAAAGAGAAGAGAGAGAAAAACGAAACCTGTAACAGATACATTTCCATTTCTGTTTAACAATGGGAGAG : GAAGAGAAGAAGGTAGAAGAAGTGAAGAAAGAGGAGGCACCGAAAGATGAAAAGCCAAGTGACGGCGGCGGCGGTGAAGAGAAGAAAGAGGAAAAAAAGGCGGAGGAAGAATCGAAAGAGGCGAAACCAGAACCTCCACCACCACCACCACCTGAAATTGTTTTGAGAGTTTTCATGCATTGTGAAGGTTGTGCTCGTAAAGTCCGCAAATCGCTCAAAGGATTTCAAG : GAGTTGAAGATGTGTTGACGGACTGCAAAACTCATAAGGTTGTGGTGAAAGGGGAAAAAGCAGATCCGTTGAAGGTATTGGAGAGAATACAGAAAAAGAGTCATCGTCAAGTTGAGCTTCTCTCACCAATCCCAAAACCACCGGAGCCGGCGGCTGAAGAACCTAAGAAACCGGAGGAAAAAGAAGCCGTTAAACCCGATGAGAAAAAAGAGGAG : CCTCAGGTCATTACAGTAGTTCTGAAAGTTCACATGCATTGTGAGGCTTGTGCACAAGAAATCAAAAGACGTATACAGAAAATGAAAG : GTGTGGAGAATGCAGAACCGGACTTGAAAAACTCACAGGTGACAGTGAAAGGTGTGTTTGAGGCAACAAAACTGGTGGAATATGTTAGCAAAAGGACTGGAAAACGGGCAGTTATTGTGAAAGTAGAACCTGAAAAGAAAGCGGAGGAGGAGGCGAAGCCCAAGGAAGATCAAAAGGAAGAGAAGAAAACCGATGAAAAAGAAGCGAAGAAAGTTGAAGGTGACGACAAAGAGGAGAAGAAGGAAGAAGCAGCAGCTGCTGCACCAGCTAAGGAAGAAGCCGTAGTAGCAGCAGCACCAGCTAAGGAAGAAGCTGTACAAAACGACGTCGATCCAATAGTAGATGTGAAGAAGAATGAGTTTTACTACTATCACCATCCTCAGAATCATCAGCTGTACAATAATCCACAGAGACTTGCACATGAAATGTTTGCGTACCCTCCACCTCCGCAGATTTTCAGCGATGAAAATCCGAATGCATGTTCCGTGATGTAAATTTGGAGGGATATGAGGGGTAAAAAGGGCAATGTACGTCCAACCCCTCTTGTGGTGGTGCTCTTCATGTGAGTCTTTGTCTTGGGACTCGCTAAGTTACAAGTGATCTACTAGACAAATACTGTAGAATTTTATGAGCCCTCTGTACTTTTTTTTTTTTTTTGGTCTTCTTTATGTTGTTATATACTCCCTATATGTATGATACAATAAACAGTACTATATGAAAATTTTAAATATTGTACTTGGAACTTCAAAG</gDNA_template>
            <first_frame> *  V  S  E  C  S  F  S  L  R  S  D  A  P  S  L  D  H  F  P  P  F  P  F  L  H  K  K  R  R  E  R  K  T  K  P  V  T  D  T  F  P  F  L  F  N  N  G  R   : G  R  E  E  G  R  R  S  E  E  R  G  G  T  E  R  *  K  A  K  *  R  R  R  R  *  R  E  E  R  G  K  K  G  G  G  R  I  E  R  G  E  T  R  T  S  T  T  T  T  T  *  N  C  F  E  S  F  H  A  L  *  R  L  C  S  *  S  P  Q  I  A  Q  R  I  S  R :   S  *  R  C  V  D  G  L  Q  N  S  *  G  C  G  E  R  G  K  S  R  S  V  E  G  I  G  E  N  T  E  K  E  S  S  S  S  *  A  S  L  T  N  P  K  T  T  G  A  G  G  *  R  T  *  E  T  G  G  K  R  S  R  *  T  R  *  E  K  R  G   : A  S  G  H  Y  S  S  S  E  S  S  H  A  L  *  G  L  C  T  R  N  Q  K  T  Y  T  E  N  E  R :   C  G  E  C  R  T  G  L  E  K  L  T  G  D  S  E  R  C  V  *  G  N  K  T  G  G  I  C  *  Q  K  D  W  K  T  G  S  Y  C  E  S  R  T  *  K  E  S  G  G  G  G  E  A  Q  G  R  S  K  G  R  E  E  N  R  *  K  R  S  E  E  S  *  R  *  R  Q  R  G  E  E  G  R  S  S  S  C  C  T  S  *  G  R  S  R  S  S  S  S  T  S  *  G  R  S  C  T  K  R  R  R  S  N  S  R  C  E  E  E  *  V  L  L  L  S  P  S  S  E  S  S  A  V  Q  *  S  T  E  T  C  T  *  N  V  C  V  P  S  T  S  A  D  F  Q  R  *  K  S  E  C  M  F  R  D  V  N  L  E  G  Y  E  G  *  K  G  Q  C  T  S  N  P  S  C  G  G  A  L  H  V  S  L  C  L  G  T  R  *  V  T  S  D  L  L  D  K  Y  C  R  I  L  *  A  L  C  T  F  F  F  F  L  V  F  F  M  L  L  Y  T  P  Y  M  Y  D  T  I  N  S  T  I  *  K  F  *  I  L  Y  L  E  L  Q   </first_frame>
            <second_frame>  E  *  V  S  A  L  S  P  L  D  L  M  L  H  H  *  T  T  S  P  L  F  L  F  S  I  K  R  E  E  R  E  K  R  N  L  *  Q  I  H  F  H  F  C  L  T  M  G  E  :  E  E  K  K  V  E  E  V  K  K  E  E  A  P  K  D  E  K  P  S  D  G  G  G  G  E  E  K  K  E  E  K  K  A  E  E  E  S  K  E  A  K  P  E  P  P  P  P  P  P  P  E  I  V  L  R  V  F  M  H  C  E  G  C  A  R  K  V  R  K  S  L  K  G  F  Q   : G  V  E  D  V  L  T  D  C  K  T  H  K  V  V  V  K  G  E  K  A  D  P  L  K  V  L  E  R  I  Q  K  K  S  H  R  Q  V  E  L  L  S  P  I  P  K  P  P  E  P  A  A  E  E  P  K  K  P  E  E  K  E  A  V  K  P  D  E  K  K  E  E  :  P  Q  V  I  T  V  V  L  K  V  H  M  H  C  E  A  C  A  Q  E  I  K  R  R  I  Q  K  M  K   : G  V  E  N  A  E  P  D  L  K  N  S  Q  V  T  V  K  G  V  F  E  A  T  K  L  V  E  Y  V  S  K  R  T  G  K  R  A  V  I  V  K  V  E  P  E  K  K  A  E  E  E  A  K  P  K  E  D  Q  K  E  E  K  K  T  D  E  K  E  A  K  K  V  E  G  D  D  K  E  E  K  K  E  E  A  A  A  A  A  P  A  K  E  E  A  V  V  A  A  A  P  A  K  E  E  A  V  Q  N  D  V  D  P  I  V  D  V  K  K  N  E  F  Y  Y  Y  H  H  P  Q  N  H  Q  L  Y  N  N  P  Q  R  L  A  H  E  M  F  A  Y  P  P  P  P  Q  I  F  S  D  E  N  P  N  A  C  S  V  M  *  I  W  R  D  M  R  G  K  K  G  N  V  R  P  T  P  L  V  V  V  L  F  M  *  V  F  V  L  G  L  A  K  L  Q  V  I  Y  *  T  N  T  V  E  F  Y  E  P  S  V  L  F  F  F  F  W  S  S  L  C  C  Y  I  L  P  I  C  M  I  Q  *  T  V  L  Y  E  N  F  K  Y  C  T  W  N  F  K  </second_frame>
            <third_frame>   S  E  *  V  L  F  L  P  *  I  *  C  S  I  T  R  P  L  P  P  F  S  F  S  P  *  K  E  K  R  E  K  N  E  T  C  N  R  Y  I  S  I  S  V  *  Q  W  E  R :   K  R  R  R  *  K  K  *  R  K  R  R  H  R  K  M  K  S  Q  V  T  A  A  A  V  K  R  R  K  R  K  K  R  R  R  K  N  R  K  R  R  N  Q  N  L  H  H  H  H  H  L  K  L  F  *  E  F  S  C  I  V  K  V  V  L  V  K  S  A  N  R  S  K  D  F  K  :  E  L  K  M  C  *  R  T  A  K  L  I  R  L  W  *  K  G  K  K  Q  I  R  *  R  Y  W  R  E  Y  R  K  R  V  I  V  K  L  S  F  S  H  Q  S  Q  N  H  R  S  R  R  L  K  N  L  R  N  R  R  K  K  K  P  L  N  P  M  R  K  K  R  S :   L  R  S  L  Q  *  F  *  K  F  T  C  I  V  R  L  V  H  K  K  S  K  D  V  Y  R  K  *  K  :  V  W  R  M  Q  N  R  T  *  K  T  H  R  *  Q  *  K  V  C  L  R  Q  Q  N  W  W  N  M  L  A  K  G  L  E  N  G  Q  L  L  *  K  *  N  L  K  R  K  R  R  R  R  R  S  P  R  K  I  K  R  K  R  R  K  P  M  K  K  K  R  R  K  L  K  V  T  T  K  R  R  R  R  K  K  Q  Q  L  L  H  Q  L  R  K  K  P  *  *  Q  Q  H  Q  L  R  K  K  L  Y  K  T  T  S  I  Q  *  *  M  *  R  R  M  S  F  T  T  I  T  I  L  R  I  I  S  C  T  I  I  H  R  D  L  H  M  K  C  L  R  T  L  H  L  R  R  F  S  A  M  K  I  R  M  H  V  P  *  C  K  F  G  G  I  *  G  V  K  R  A  M  Y  V  Q  P  L  L  W  W  C  S  S  C  E  S  L  S  W  D  S  L  S  Y  K  *  S  T  R  Q  I  L  *  N  F  M  S  P  L  Y  F  F  F  F  F  G  L  L  Y  V  V  I  Y  S  L  Y  V  *  Y  N  K  Q  Y  Y  M  K  I  L  N  I  V  L  G  T  S  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0113N10.1" strand="+"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="105590" stop="105625"/>
                    <exon start="105726" stop="105954"/>
                    <exon start="106028" stop="106242"/>
                    <exon start="106336" stop="106423"/>
                    <exon start="107076" stop="107569"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1059</number_coding_nucleotides>
                  <number_encoded_amino_acids>353</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QIHFHFCLTMGEEEKKVEEVKKEEAPKDEKPSDGGGGEEKKEEKKAEEESKEAKPEPPPPPPPEIVLRVFMHCEGCARKVRKSLKGFQGVEDVLTDCKTHKVVVKGEKADPLKVLERIQKKSHRQVELLSPIPKPPEPAAEEPKKPEEKEAVKPDEKKEEPQVITVVLKVHMHCEACAQEIKRRIQKMKGVENAEPDLKNSQVTVKGVFEATKLVEYVSKRTGKRAVIVKVEPEKKAEEEAKPKEDQKEEKKTDEKEAKKVEGDDKEEKKEEAAAAAPAKEEAVVAAAPAKEEAVQNDVDPIVDVKKNEFYYYHHPQNHQLYNNPQRLAHEMFAYPPPPQIFSDENPNACSVM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="105724" e_stop="105954"/>
            <exon e_start="106028" e_stop="106242"/>
            <exon e_start="106336" e_stop="106423"/>
            <exon e_start="107076" e_stop="107825"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="0.939"/>
          <exon-intron don_prob="1.000" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.989" e_score="1.000"/>
          <exon-only e_score="0.927"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.939">
            <gDNA_exon_boundary e_start="105724" e_stop="105954" e_length="231"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="105955" i_stop="106027" i_length="73"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="106028" e_stop="106242" e_length="215"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.994">
            <gDNA_intron_boundary i_start="106243" i_stop="106335" i_length="93"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="106336" e_stop="106423" e_length="88"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.989">
            <gDNA_intron_boundary i_start="106424" i_stop="107075" i_length="652"/>
          </intron>
          <exon e_serial="4" e_score="0.927">
            <gDNA_exon_boundary e_start="107076" e_stop="107825" e_length="750"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105724" stop="105954"/>
              <exon start="106028" stop="106242"/>
              <exon start="106336" stop="106423"/>
              <exon start="107076" stop="107163"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E450512" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105861" stop="105954"/>
              <exon start="106028" stop="106242"/>
              <exon start="106336" stop="106423"/>
              <exon start="107076" stop="107260"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266146" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105869" stop="105954"/>
              <exon start="106028" stop="106242"/>
              <exon start="106336" stop="106423"/>
              <exon start="107076" stop="107261"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E537674" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105894" stop="105954"/>
              <exon start="106028" stop="106242"/>
              <exon start="106336" stop="106423"/>
              <exon start="107076" stop="107263"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217429" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105927" stop="105954"/>
              <exon start="106028" stop="106242"/>
              <exon start="106336" stop="106423"/>
              <exon start="107076" stop="107250"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E456766" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106074" stop="106242"/>
              <exon start="106336" stop="106423"/>
              <exon start="107076" stop="107263"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227575" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106076" stop="106242"/>
              <exon start="106336" stop="106423"/>
              <exon start="107076" stop="107264"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227356" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106077" stop="106242"/>
              <exon start="106336" stop="106423"/>
              <exon start="107076" stop="107263"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217336" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106078" stop="106242"/>
              <exon start="106336" stop="106423"/>
              <exon start="107076" stop="107263"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227458" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106101" stop="106242"/>
              <exon start="106336" stop="106423"/>
              <exon start="107076" stop="107263"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228625" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106159" stop="106242"/>
              <exon start="106336" stop="106423"/>
              <exon start="107076" stop="107263"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220244" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106183" stop="106242"/>
              <exon start="106336" stop="106423"/>
              <exon start="107076" stop="107263"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220670" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106344" stop="106423"/>
              <exon start="107076" stop="107553"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E582694" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106350" stop="106423"/>
              <exon start="107076" stop="107624"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E591643" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106381" stop="106423"/>
              <exon start="107076" stop="107266"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217535" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106401" stop="106423"/>
              <exon start="107076" stop="107825"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E584982" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107174" stop="107824"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E452871" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107358" stop="107796"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E600177" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107467" stop="107817"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E586520" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107478" stop="107807"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E587152" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGGAAGAGAAGAAGGTAGAAGAAGTGAAGAAAGAGGAGGCACCGAAAGATGAAAAGCCAAGTGACGGCGGCGGCGGTGAAGAGAAGAAAGAGGAAAAAAAGGCGGAGGAAGAATCGAAAGAGGCGAAACCAGAACCTCCACCACCACCACCACCTGAAATTGTTTTGAGAGTTTTCATGCATTGTGAAGGTTGTGCTCGTAAAGTCCGCAAATCGCTCAAAGGATTTCAAG : GAGTTGAAGATGTGTTGACGGACTGCAAAACTCATAAGGTTGTGGTGAAAGGGGAAAAAGCAGATCCGTTGAAGGTATTGGAGAGAATACAGAAAAAGAGTCATCGTCAAGTTGAGCTTCTCTCACCAATCCCAAAACCACCGGAGCCGGCGGCTGAAGAACCTAAGAAACCGGAGGAAAAAGAAGCCGTTAAACCCGATGAGAAAAAAGAGGAG : CCTCAGGTCATTACAGTAGTTCTGAAAGTTCACATGCATTGTGAGGCTTGTGCACAAGAAATCAAAAGACGTATACAGAAAATGAAAG : GTGTGGAGAATGCAGAACCGGACTTGAAAAACTCACAGGTGACAGTGAAAGGTGTGTTTGAGGCAACAAAACTGGTGGAATATGTTAGCAAAAGGACTGGAAAACGGGCAGTTATTGTGAAAGTAGAACCTGAAAAGAAAGCGGAGGAGGAGGCGAAGCCCAAGGAAGATCAAAAGGAAGAGAAGAAAACCGATGAAAAAGAAGCGAAGAAAGTTGAAGGTGACGACAAAGAGGAGAAGAAGGAAGAAGCAGCAGCTGCTGCACCAGCTAAGGAAGAAGCCGTAGTAGCAGCAGCACCAGCTAAGGAAGAAGCTGTACAAAACGACGTCGATCCAATAGTAGATGTGAAGAAGAATGAGTTTTACTACTATCACCATCCTCAGAATCATCAGCTGTACAATAATCCACAGAGACTTGCACATGAAATGTTTGCGTACCCTCCACCTCCGCAGATTTTCAGCGATGAAAATCCGAATGCATGTTCCGTGATGTAAATTTGGAGGGATATGAGGGGTAAAAAGGGCAATGTACGTCCAACCCCTCTTGTGGTGGTGCTCTTCATGTGAGTCTTTGTCTTGGGACTCGCTAAGTTACAAGTGATCTACTAGACAAATACTGTAGAATTTTATGAGCCCTCTGTACTTTTTTTTTTTTTTTGGTCTTCTTTATGTTGTTATATACTCCCTATATGTATGATACAATAAACAGTACTATATGAAAATTTTAAATATTGTACTTGGAACTTCAAAG</gDNA_template>
            <first_frame> R  K  R  R  R  *  K  K  *  R  K  R  R  H  R  K  M  K  S  Q  V  T  A  A  A  V  K  R  R  K  R  K  K  R  R  R  K  N  R  K  R  R  N  Q  N  L  H  H  H  H  H  L  K  L  F  *  E  F  S  C  I  V  K  V  V  L  V  K  S  A  N  R  S  K  D  F  K  :  E  L  K  M  C  *  R  T  A  K  L  I  R  L  W  *  K  G  K  K  Q  I  R  *  R  Y  W  R  E  Y  R  K  R  V  I  V  K  L  S  F  S  H  Q  S  Q  N  H  R  S  R  R  L  K  N  L  R  N  R  R  K  K  K  P  L  N  P  M  R  K  K  R  S :   L  R  S  L  Q  *  F  *  K  F  T  C  I  V  R  L  V  H  K  K  S  K  D  V  Y  R  K  *  K  :  V  W  R  M  Q  N  R  T  *  K  T  H  R  *  Q  *  K  V  C  L  R  Q  Q  N  W  W  N  M  L  A  K  G  L  E  N  G  Q  L  L  *  K  *  N  L  K  R  K  R  R  R  R  R  S  P  R  K  I  K  R  K  R  R  K  P  M  K  K  K  R  R  K  L  K  V  T  T  K  R  R  R  R  K  K  Q  Q  L  L  H  Q  L  R  K  K  P  *  *  Q  Q  H  Q  L  R  K  K  L  Y  K  T  T  S  I  Q  *  *  M  *  R  R  M  S  F  T  T  I  T  I  L  R  I  I  S  C  T  I  I  H  R  D  L  H  M  K  C  L  R  T  L  H  L  R  R  F  S  A  M  K  I  R  M  H  V  P  *  C  K  F  G  G  I  *  G  V  K  R  A  M  Y  V  Q  P  L  L  W  W  C  S  S  C  E  S  L  S  W  D  S  L  S  Y  K  *  S  T  R  Q  I  L  *  N  F  M  S  P  L  Y  F  F  F  F  F  G  L  L  Y  V  V  I  Y  S  L  Y  V  *  Y  N  K  Q  Y  Y  M  K  I  L  N  I  V  L  G  T  S  K </first_frame>
            <second_frame>  G  R  E  E  G  R  R  S  E  E  R  G  G  T  E  R  *  K  A  K  *  R  R  R  R  *  R  E  E  R  G  K  K  G  G  G  R  I  E  R  G  E  T  R  T  S  T  T  T  T  T  *  N  C  F  E  S  F  H  A  L  *  R  L  C  S  *  S  P  Q  I  A  Q  R  I  S  R :   S  *  R  C  V  D  G  L  Q  N  S  *  G  C  G  E  R  G  K  S  R  S  V  E  G  I  G  E  N  T  E  K  E  S  S  S  S  *  A  S  L  T  N  P  K  T  T  G  A  G  G  *  R  T  *  E  T  G  G  K  R  S  R  *  T  R  *  E  K  R  G   : A  S  G  H  Y  S  S  S  E  S  S  H  A  L  *  G  L  C  T  R  N  Q  K  T  Y  T  E  N  E  R :   C  G  E  C  R  T  G  L  E  K  L  T  G  D  S  E  R  C  V  *  G  N  K  T  G  G  I  C  *  Q  K  D  W  K  T  G  S  Y  C  E  S  R  T  *  K  E  S  G  G  G  G  E  A  Q  G  R  S  K  G  R  E  E  N  R  *  K  R  S  E  E  S  *  R  *  R  Q  R  G  E  E  G  R  S  S  S  C  C  T  S  *  G  R  S  R  S  S  S  S  T  S  *  G  R  S  C  T  K  R  R  R  S  N  S  R  C  E  E  E  *  V  L  L  L  S  P  S  S  E  S  S  A  V  Q  *  S  T  E  T  C  T  *  N  V  C  V  P  S  T  S  A  D  F  Q  R  *  K  S  E  C  M  F  R  D  V  N  L  E  G  Y  E  G  *  K  G  Q  C  T  S  N  P  S  C  G  G  A  L  H  V  S  L  C  L  G  T  R  *  V  T  S  D  L  L  D  K  Y  C  R  I  L  *  A  L  C  T  F  F  F  F  L  V  F  F  M  L  L  Y  T  P  Y  M  Y  D  T  I  N  S  T  I  *  K  F  *  I  L  Y  L  E  L  Q   </second_frame>
            <third_frame>   E  E  K  K  V  E  E  V  K  K  E  E  A  P  K  D  E  K  P  S  D  G  G  G  G  E  E  K  K  E  E  K  K  A  E  E  E  S  K  E  A  K  P  E  P  P  P  P  P  P  P  E  I  V  L  R  V  F  M  H  C  E  G  C  A  R  K  V  R  K  S  L  K  G  F  Q   : G  V  E  D  V  L  T  D  C  K  T  H  K  V  V  V  K  G  E  K  A  D  P  L  K  V  L  E  R  I  Q  K  K  S  H  R  Q  V  E  L  L  S  P  I  P  K  P  P  E  P  A  A  E  E  P  K  K  P  E  E  K  E  A  V  K  P  D  E  K  K  E  E  :  P  Q  V  I  T  V  V  L  K  V  H  M  H  C  E  A  C  A  Q  E  I  K  R  R  I  Q  K  M  K   : G  V  E  N  A  E  P  D  L  K  N  S  Q  V  T  V  K  G  V  F  E  A  T  K  L  V  E  Y  V  S  K  R  T  G  K  R  A  V  I  V  K  V  E  P  E  K  K  A  E  E  E  A  K  P  K  E  D  Q  K  E  E  K  K  T  D  E  K  E  A  K  K  V  E  G  D  D  K  E  E  K  K  E  E  A  A  A  A  A  P  A  K  E  E  A  V  V  A  A  A  P  A  K  E  E  A  V  Q  N  D  V  D  P  I  V  D  V  K  K  N  E  F  Y  Y  Y  H  H  P  Q  N  H  Q  L  Y  N  N  P  Q  R  L  A  H  E  M  F  A  Y  P  P  P  P  Q  I  F  S  D  E  N  P  N  A  C  S  V  M  *  I  W  R  D  M  R  G  K  K  G  N  V  R  P  T  P  L  V  V  V  L  F  M  *  V  F  V  L  G  L  A  K  L  Q  V  I  Y  *  T  N  T  V  E  F  Y  E  P  S  V  L  F  F  F  F  W  S  S  L  C  C  Y  I  L  P  I  C  M  I  Q  *  T  V  L  Y  E  N  F  K  Y  C  T  W  N  F  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0113N10.1" strand="+"/>
                <serials PGL_serial="19" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="105726" stop="105954"/>
                    <exon start="106028" stop="106242"/>
                    <exon start="106336" stop="106423"/>
                    <exon start="107076" stop="107569"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1023</number_coding_nucleotides>
                  <number_encoded_amino_acids>341</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EEKKVEEVKKEEAPKDEKPSDGGGGEEKKEEKKAEEESKEAKPEPPPPPPPEIVLRVFMHCEGCARKVRKSLKGFQGVEDVLTDCKTHKVVVKGEKADPLKVLERIQKKSHRQVELLSPIPKPPEPAAEEPKKPEEKEAVKPDEKKEEPQVITVVLKVHMHCEACAQEIKRRIQKMKGVENAEPDLKNSQVTVKGVFEATKLVEYVSKRTGKRAVIVKVEPEKKAEEEAKPKEDQKEEKKTDEKEAKKVEGDDKEEKKEEAAAAAPAKEEAVVAAAPAKEEAVQNDVDPIVDVKKNEFYYYHHPQNHQLYNNPQRLAHEMFAYPPPPQIFSDENPNACSVM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="105491" e_stop="105625"/>
            <exon e_start="105726" e_stop="105954"/>
            <exon e_start="106037" e_stop="106242"/>
            <exon e_start="106336" e_stop="106423"/>
            <exon e_start="107076" e_stop="107825"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.776" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.989" e_score="1.000"/>
          <exon-only e_score="0.927"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="105491" e_stop="105625" e_length="135"/>
          </exon>
          <intron i_serial="1" don_prob="0.776" acc_prob="0.989">
            <gDNA_intron_boundary i_start="105626" i_stop="105725" i_length="100"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="105726" e_stop="105954" e_length="229"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.000">
            <gDNA_intron_boundary i_start="105955" i_stop="106036" i_length="82"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="106037" e_stop="106242" e_length="206"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.994">
            <gDNA_intron_boundary i_start="106243" i_stop="106335" i_length="93"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="106336" e_stop="106423" e_length="88"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.989">
            <gDNA_intron_boundary i_start="106424" i_stop="107075" i_length="652"/>
          </intron>
          <exon e_serial="5" e_score="0.927">
            <gDNA_exon_boundary e_start="107076" e_stop="107825" e_length="750"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105491" stop="105625"/>
              <exon start="105726" stop="105954"/>
              <exon start="106037" stop="106242"/>
              <exon start="106336" stop="106423"/>
              <exon start="107076" stop="107235"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705930" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105491" stop="105625"/>
              <exon start="105726" stop="105954"/>
              <exon start="106037" stop="106242"/>
              <exon start="106336" stop="106423"/>
              <exon start="107076" stop="107225"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706020" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106074" stop="106242"/>
              <exon start="106336" stop="106423"/>
              <exon start="107076" stop="107263"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227575" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106076" stop="106242"/>
              <exon start="106336" stop="106423"/>
              <exon start="107076" stop="107264"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227356" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106077" stop="106242"/>
              <exon start="106336" stop="106423"/>
              <exon start="107076" stop="107263"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217336" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106078" stop="106242"/>
              <exon start="106336" stop="106423"/>
              <exon start="107076" stop="107263"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227458" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106101" stop="106242"/>
              <exon start="106336" stop="106423"/>
              <exon start="107076" stop="107263"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228625" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106159" stop="106242"/>
              <exon start="106336" stop="106423"/>
              <exon start="107076" stop="107263"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220244" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106183" stop="106242"/>
              <exon start="106336" stop="106423"/>
              <exon start="107076" stop="107263"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220670" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106344" stop="106423"/>
              <exon start="107076" stop="107553"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E582694" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106350" stop="106423"/>
              <exon start="107076" stop="107624"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E591643" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106381" stop="106423"/>
              <exon start="107076" stop="107266"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217535" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106401" stop="106423"/>
              <exon start="107076" stop="107825"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E584982" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107174" stop="107824"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E452871" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107358" stop="107796"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E600177" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107467" stop="107817"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E586520" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107478" stop="107807"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E587152" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCTCTTTCTCCCTTAGATCTGATGCTCCATCACTAGACCACTTCCCCCCTTTTCCTTTTCTCCATAAAAAGAGAAGAGAGAGAAAAACGAAACCTGTAACAGATACATTTCCATTTCTGTTTAACAATGGGAGAG : GAAGAGAAGAAGGTAGAAGAAGTGAAGAAAGAGGAGGCACCGAAAGATGAAAAGCCAAGTGACGGCGGCGGCGGTGAAGAGAAGAAAGAGGAAAAAAAGGCGGAGGAAGAATCGAAAGAGGCGAAACCAGAACCTCCACCACCACCACCACCTGAAATTGTTTTGAGAGTTTTCATGCATTGTGAAGGTTGTGCTCGTAAAGTCCGCAAATCGCTCAAAGGATTTCAAG : ATGTGTTGACGGACTGCAAAACTCATAAGGTTGTGGTGAAAGGGGAAAAAGCAGATCCGTTGAAGGTATTGGAGAGAATACAGAAAAAGAGTCATCGTCAAGTTGAGCTTCTCTCACCAATCCCAAAACCACCGGAGCCGGCGGCTGAAGAACCTAAGAAACCGGAGGAAAAAGAAGCCGTTAAACCCGATGAGAAAAAAGAGGAG : CCTCAGGTCATTACAGTAGTTCTGAAAGTTCACATGCATTGTGAGGCTTGTGCACAAGAAATCAAAAGACGTATACAGAAAATGAAAG : GTGTGGAGAATGCAGAACCGGACTTGAAAAACTCACAGGTGACAGTGAAAGGTGTGTTTGAGGCAACAAAACTGGTGGAATATGTTAGCAAAAGGACTGGAAAACGGGCAGTTATTGTGAAAGTAGAACCTGAAAAGAAAGCGGAGGAGGAGGCGAAGCCCAAGGAAGATCAAAAGGAAGAGAAGAAAACCGATGAAAAAGAAGCGAAGAAAGTTGAAGGTGACGACAAAGAGGAGAAGAAGGAAGAAGCAGCAGCTGCTGCACCAGCTAAGGAAGAAGCCGTAGTAGCAGCAGCACCAGCTAAGGAAGAAGCTGTACAAAACGACGTCGATCCAATAGTAGATGTGAAGAAGAATGAGTTTTACTACTATCACCATCCTCAGAATCATCAGCTGTACAATAATCCACAGAGACTTGCACATGAAATGTTTGCGTACCCTCCACCTCCGCAGATTTTCAGCGATGAAAATCCGAATGCATGTTCCGTGATGTAAATTTGGAGGGATATGAGGGGTAAAAAGGGCAATGTACGTCCAACCCCTCTTGTGGTGGTGCTCTTCATGTGAGTCTTTGTCTTGGGACTCGCTAAGTTACAAGTGATCTACTAGACAAATACTGTAGAATTTTATGAGCCCTCTGTACTTTTTTTTTTTTTTTGGTCTTCTTTATGTTGTTATATACTCCCTATATGTATGATACAATAAACAGTACTATATGAAAATTTTAAATATTGTACTTGGAACTTCAAAG</gDNA_template>
            <first_frame> A  L  S  P  L  D  L  M  L  H  H  *  T  T  S  P  L  F  L  F  S  I  K  R  E  E  R  E  K  R  N  L  *  Q  I  H  F  H  F  C  L  T  M  G  E  :  E  E  K  K  V  E  E  V  K  K  E  E  A  P  K  D  E  K  P  S  D  G  G  G  G  E  E  K  K  E  E  K  K  A  E  E  E  S  K  E  A  K  P  E  P  P  P  P  P  P  P  E  I  V  L  R  V  F  M  H  C  E  G  C  A  R  K  V  R  K  S  L  K  G  F  Q   : D  V  L  T  D  C  K  T  H  K  V  V  V  K  G  E  K  A  D  P  L  K  V  L  E  R  I  Q  K  K  S  H  R  Q  V  E  L  L  S  P  I  P  K  P  P  E  P  A  A  E  E  P  K  K  P  E  E  K  E  A  V  K  P  D  E  K  K  E  E  :  P  Q  V  I  T  V  V  L  K  V  H  M  H  C  E  A  C  A  Q  E  I  K  R  R  I  Q  K  M  K   : G  V  E  N  A  E  P  D  L  K  N  S  Q  V  T  V  K  G  V  F  E  A  T  K  L  V  E  Y  V  S  K  R  T  G  K  R  A  V  I  V  K  V  E  P  E  K  K  A  E  E  E  A  K  P  K  E  D  Q  K  E  E  K  K  T  D  E  K  E  A  K  K  V  E  G  D  D  K  E  E  K  K  E  E  A  A  A  A  A  P  A  K  E  E  A  V  V  A  A  A  P  A  K  E  E  A  V  Q  N  D  V  D  P  I  V  D  V  K  K  N  E  F  Y  Y  Y  H  H  P  Q  N  H  Q  L  Y  N  N  P  Q  R  L  A  H  E  M  F  A  Y  P  P  P  P  Q  I  F  S  D  E  N  P  N  A  C  S  V  M  *  I  W  R  D  M  R  G  K  K  G  N  V  R  P  T  P  L  V  V  V  L  F  M  *  V  F  V  L  G  L  A  K  L  Q  V  I  Y  *  T  N  T  V  E  F  Y  E  P  S  V  L  F  F  F  F  W  S  S  L  C  C  Y  I  L  P  I  C  M  I  Q  *  T  V  L  Y  E  N  F  K  Y  C  T  W  N  F  K  </first_frame>
            <second_frame>  L  F  L  P  *  I  *  C  S  I  T  R  P  L  P  P  F  S  F  S  P  *  K  E  K  R  E  K  N  E  T  C  N  R  Y  I  S  I  S  V  *  Q  W  E  R :   K  R  R  R  *  K  K  *  R  K  R  R  H  R  K  M  K  S  Q  V  T  A  A  A  V  K  R  R  K  R  K  K  R  R  R  K  N  R  K  R  R  N  Q  N  L  H  H  H  H  H  L  K  L  F  *  E  F  S  C  I  V  K  V  V  L  V  K  S  A  N  R  S  K  D  F  K  :  M  C  *  R  T  A  K  L  I  R  L  W  *  K  G  K  K  Q  I  R  *  R  Y  W  R  E  Y  R  K  R  V  I  V  K  L  S  F  S  H  Q  S  Q  N  H  R  S  R  R  L  K  N  L  R  N  R  R  K  K  K  P  L  N  P  M  R  K  K  R  S :   L  R  S  L  Q  *  F  *  K  F  T  C  I  V  R  L  V  H  K  K  S  K  D  V  Y  R  K  *  K  :  V  W  R  M  Q  N  R  T  *  K  T  H  R  *  Q  *  K  V  C  L  R  Q  Q  N  W  W  N  M  L  A  K  G  L  E  N  G  Q  L  L  *  K  *  N  L  K  R  K  R  R  R  R  R  S  P  R  K  I  K  R  K  R  R  K  P  M  K  K  K  R  R  K  L  K  V  T  T  K  R  R  R  R  K  K  Q  Q  L  L  H  Q  L  R  K  K  P  *  *  Q  Q  H  Q  L  R  K  K  L  Y  K  T  T  S  I  Q  *  *  M  *  R  R  M  S  F  T  T  I  T  I  L  R  I  I  S  C  T  I  I  H  R  D  L  H  M  K  C  L  R  T  L  H  L  R  R  F  S  A  M  K  I  R  M  H  V  P  *  C  K  F  G  G  I  *  G  V  K  R  A  M  Y  V  Q  P  L  L  W  W  C  S  S  C  E  S  L  S  W  D  S  L  S  Y  K  *  S  T  R  Q  I  L  *  N  F  M  S  P  L  Y  F  F  F  F  F  G  L  L  Y  V  V  I  Y  S  L  Y  V  *  Y  N  K  Q  Y  Y  M  K  I  L  N  I  V  L  G  T  S  K </second_frame>
            <third_frame>   S  F  S  L  R  S  D  A  P  S  L  D  H  F  P  P  F  P  F  L  H  K  K  R  R  E  R  K  T  K  P  V  T  D  T  F  P  F  L  F  N  N  G  R   : G  R  E  E  G  R  R  S  E  E  R  G  G  T  E  R  *  K  A  K  *  R  R  R  R  *  R  E  E  R  G  K  K  G  G  G  R  I  E  R  G  E  T  R  T  S  T  T  T  T  T  *  N  C  F  E  S  F  H  A  L  *  R  L  C  S  *  S  P  Q  I  A  Q  R  I  S  R :   C  V  D  G  L  Q  N  S  *  G  C  G  E  R  G  K  S  R  S  V  E  G  I  G  E  N  T  E  K  E  S  S  S  S  *  A  S  L  T  N  P  K  T  T  G  A  G  G  *  R  T  *  E  T  G  G  K  R  S  R  *  T  R  *  E  K  R  G   : A  S  G  H  Y  S  S  S  E  S  S  H  A  L  *  G  L  C  T  R  N  Q  K  T  Y  T  E  N  E  R :   C  G  E  C  R  T  G  L  E  K  L  T  G  D  S  E  R  C  V  *  G  N  K  T  G  G  I  C  *  Q  K  D  W  K  T  G  S  Y  C  E  S  R  T  *  K  E  S  G  G  G  G  E  A  Q  G  R  S  K  G  R  E  E  N  R  *  K  R  S  E  E  S  *  R  *  R  Q  R  G  E  E  G  R  S  S  S  C  C  T  S  *  G  R  S  R  S  S  S  S  T  S  *  G  R  S  C  T  K  R  R  R  S  N  S  R  C  E  E  E  *  V  L  L  L  S  P  S  S  E  S  S  A  V  Q  *  S  T  E  T  C  T  *  N  V  C  V  P  S  T  S  A  D  F  Q  R  *  K  S  E  C  M  F  R  D  V  N  L  E  G  Y  E  G  *  K  G  Q  C  T  S  N  P  S  C  G  G  A  L  H  V  S  L  C  L  G  T  R  *  V  T  S  D  L  L  D  K  Y  C  R  I  L  *  A  L  C  T  F  F  F  F  L  V  F  F  M  L  L  Y  T  P  Y  M  Y  D  T  I  N  S  T  I  *  K  F  *  I  L  Y  L  E  L  Q   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0113N10.1" strand="+"/>
                <serials PGL_serial="19" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="105590" stop="105625"/>
                    <exon start="105726" stop="105954"/>
                    <exon start="106037" stop="106242"/>
                    <exon start="106336" stop="106423"/>
                    <exon start="107076" stop="107569"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1050</number_coding_nucleotides>
                  <number_encoded_amino_acids>350</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QIHFHFCLTMGEEEKKVEEVKKEEAPKDEKPSDGGGGEEKKEEKKAEEESKEAKPEPPPPPPPEIVLRVFMHCEGCARKVRKSLKGFQDVLTDCKTHKVVVKGEKADPLKVLERIQKKSHRQVELLSPIPKPPEPAAEEPKKPEEKEAVKPDEKKEEPQVITVVLKVHMHCEACAQEIKRRIQKMKGVENAEPDLKNSQVTVKGVFEATKLVEYVSKRTGKRAVIVKVEPEKKAEEEAKPKEDQKEEKKTDEKEAKKVEGDDKEEKKEEAAAAAPAKEEAVVAAAPAKEEAVQNDVDPIVDVKKNEFYYYHHPQNHQLYNNPQRLAHEMFAYPPPPQIFSDENPNACSVM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="20" PGL_strand="-" PGL_start="107818" PGL_stop="107132"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="107818" e_stop="107132"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.916"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.916">
            <gDNA_exon_boundary e_start="107818" e_stop="107132" e_length="687"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107818" stop="107634"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E596189" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107789" stop="107132"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E418178" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTTCCAAGTACAATATTTAAAATTTTCATATAGTACTGTTTATTGTATCATACATATAGGGAGTATATAACAACATAAAGAAGACCAAAAAAAAAAAAAAAGTACAGAGGGCTCATAAAATTCTACAGTATTTGTCTAGTAGATCACTTGTAACTTAGCGAGTCCCAAGACAAAGACTCACATGAAGAGCACCACCACAAGAGGGGTTGGACGTACATTGCCCTTTTTACCCCTCATATCCCTCCAAATTTACATCACGGAACATGCATTCGGATTTTCATCGCTGAAAATCTGCGGAGGTGGAGGGTACGCAAACATTTCATGTGCAAGTCTCTGTGGATTATTGTACAGCTGATGATTCTGAGGATGGTGATAGTAGTAAAACTCATTCTTCTTCACATCTACTATTGGATCGACGTCGTTTTGTACAGCTTCTTCCTTAGCTGGTGCTGCTGCTACTACGGCTTCTTCCTTAGCTGGTGCAGCAGCTGCTGCTTCTTCCTTCTTCTCCTCTTTGTCGTCACCTTCAACTTTCTTCGCTTCTTTTTCATCGGTTTTCTTCTCTTCCTTTTGATCTTCCTTGGGCTTCGCCTCCTCCTCCGCTTTCTTTTCAGGTTCTACTTTCACAATAACTGCCCGTTTTCCAGTCCTTTTGCTAACATATTCCACCAGTTTTGTTGCCTCAAA</gDNA_template>
            <first_frame> V  P  S  T  I  F  K  I  F  I  *  Y  C  L  L  Y  H  T  Y  R  E  Y  I  T  T  *  R  R  P  K  K  K  K  K  Y  R  G  L  I  K  F  Y  S  I  C  L  V  D  H  L  *  L  S  E  S  Q  D  K  D  S  H  E  E  H  H  H  K  R  G  W  T  Y  I  A  L  F  T  P  H  I  P  P  N  L  H  H  G  T  C  I  R  I  F  I  A  E  N  L  R  R  W  R  V  R  K  H  F  M  C  K  S  L  W  I  I  V  Q  L  M  I  L  R  M  V  I  V  V  K  L  I  L  L  H  I  Y  Y  W  I  D  V  V  L  Y  S  F  F  L  S  W  C  C  C  Y  Y  G  F  F  L  S  W  C  S  S  C  C  F  F  L  L  L  L  F  V  V  T  F  N  F  L  R  F  F  F  I  G  F  L  L  F  L  L  I  F  L  G  L  R  L  L  L  R  F  L  F  R  F  Y  F  H  N  N  C  P  F  S  S  P  F  A  N  I  F  H  Q  F  C  C  L  K </first_frame>
            <second_frame>  F  Q  V  Q  Y  L  K  F  S  Y  S  T  V  Y  C  I  I  H  I  G  S  I  *  Q  H  K  E  D  Q  K  K  K  K  S  T  E  G  S  *  N  S  T  V  F  V  *  *  I  T  C  N  L  A  S  P  K  T  K  T  H  M  K  S  T  T  T  R  G  V  G  R  T  L  P  F  L  P  L  I  S  L  Q  I  Y  I  T  E  H  A  F  G  F  S  S  L  K  I  C  G  G  G  G  Y  A  N  I  S  C  A  S  L  C  G  L  L  Y  S  *  *  F  *  G  W  *  *  *  *  N  S  F  F  F  T  S  T  I  G  S  T  S  F  C  T  A  S  S  L  A  G  A  A  A  T  T  A  S  S  L  A  G  A  A  A  A  A  S  S  F  F  S  S  L  S  S  P  S  T  F  F  A  S  F  S  S  V  F  F  S  S  F  *  S  S  L  G  F  A  S  S  S  A  F  F  S  G  S  T  F  T  I  T  A  R  F  P  V  L  L  L  T  Y  S  T  S  F  V  A  S   </second_frame>
            <third_frame>   S  K  Y  N  I  *  N  F  H  I  V  L  F  I  V  S  Y  I  *  G  V  Y  N  N  I  K  K  T  K  K  K  K  K  V  Q  R  A  H  K  I  L  Q  Y  L  S  S  R  S  L  V  T  *  R  V  P  R  Q  R  L  T  *  R  A  P  P  Q  E  G  L  D  V  H  C  P  F  Y  P  S  Y  P  S  K  F  T  S  R  N  M  H  S  D  F  H  R  *  K  S  A  E  V  E  G  T  Q  T  F  H  V  Q  V  S  V  D  Y  C  T  A  D  D  S  E  D  G  D  S  S  K  T  H  S  S  S  H  L  L  L  D  R  R  R  F  V  Q  L  L  P  *  L  V  L  L  L  L  R  L  L  P  *  L  V  Q  Q  L  L  L  L  P  S  S  P  L  C  R  H  L  Q  L  S  S  L  L  F  H  R  F  S  S  L  P  F  D  L  P  W  A  S  P  P  P  P  L  S  F  Q  V  L  L  S  Q  *  L  P  V  F  Q  S  F  C  *  H  I  P  P  V  L  L  P  Q  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0113N10.1" strand="-"/>
                <serials PGL_serial="20" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="107665" stop="107132"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>534</number_coding_nucleotides>
                  <number_encoded_amino_acids>178</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LSESQDKDSHEEHHHKRGWTYIALFTPHIPPNLHHGTCIRIFIAENLRRWRVRKHFMCKSLWIIVQLMILRMVIVVKLILLHIYYWIDVVLYSFFLSWCCCYYGFFLSWCSSCCFFLLLLFVVTFNFLRFFFIGFLLFLLIFLGLRLLLRFLFRFYFHNNCPFSSPFANIFHQFCCLK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="21" PGL_strand="+" PGL_start="120646" PGL_stop="121361"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="120646" e_stop="121361"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="120646" e_stop="121361" e_length="716"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120646" stop="121361"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724106" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="21" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TATTGTTCTTTAGTTGCAGCAACAAATCTTTTGTTTTTTTTCAATAATCATGGGTAAATTCTTGACTCTCATGACTCACCTTCATACACTTGCCGGGTAAATATTTTAGTTATTATACTTTTTCATTTGTATTTCCTCTTTAATTTCTCCTTAAATTATAATCTCCTTCTGATATATACGCAGGCCATCCGTGATGTTGCTTTATCCTCTGTAAGTATTTGTATTCCTTTACCTCTTTTAGTATACTTGCTTTGTTTTATTTTATACAACATAGTTTCAATTTCGAGAGTTAAACAGCTCTGTTACCGTCTTTTTTTTTTCTCTCTTTATGATAAAGATATGCATCAGTAGTGGCTATAGAGAGTACGTCAAAGTTGGATGATGAGCAATGGCTTGCTTATTGGATTCTCTATTCTTTTCTCACTCTTATGGAGATGCTCCTTCAACCCATGCTTCAATGGTGAGTAACGTTTTGAGTTAGTAATTACCTTGTAATTGATTGGGTTAGTTGTAGATTCGAAAAAAAATCGTGTTAACATGCTCAAAACTCGTATGTTCAATTTTTATGTAAGTACTTGGTTTAATTGTAGGATACCTATTTGGTATGATTTGAAGCTAGCAATGGTAGCATGGCTTGTTCTTCCCCAGTTCAGGGGAGCTGCTTTTATTTATGAGAAGTTTGTTAGGGAAAAACTCATCAACAAATATGGAGCTCG</gDNA_template>
            <first_frame> Y  C  S  L  V  A  A  T  N  L  L  F  F  F  N  N  H  G  *  I  L  D  S  H  D  S  P  S  Y  T  C  R  V  N  I  L  V  I  I  L  F  H  L  Y  F  L  F  N  F  S  L  N  Y  N  L  L  L  I  Y  T  Q  A  I  R  D  V  A  L  S  S  V  S  I  C  I  P  L  P  L  L  V  Y  L  L  C  F  I  L  Y  N  I  V  S  I  S  R  V  K  Q  L  C  Y  R  L  F  F  F  S  L  Y  D  K  D  M  H  Q  *  W  L  *  R  V  R  Q  S  W  M  M  S  N  G  L  L  I  G  F  S  I  L  F  S  L  L  W  R  C  S  F  N  P  C  F  N  G  E  *  R  F  E  L  V  I  T  L  *  L  I  G  L  V  V  D  S  K  K  N  R  V  N  M  L  K  T  R  M  F  N  F  Y  V  S  T  W  F  N  C  R  I  P  I  W  Y  D  L  K  L  A  M  V  A  W  L  V  L  P  Q  F  R  G  A  A  F  I  Y  E  K  F  V  R  E  K  L  I  N  K  Y  G  A   </first_frame>
            <second_frame>  I  V  L  *  L  Q  Q  Q  I  F  C  F  F  S  I  I  M  G  K  F  L  T  L  M  T  H  L  H  T  L  A  G  *  I  F  *  L  L  Y  F  F  I  C  I  S  S  L  I  S  P  *  I  I  I  S  F  *  Y  I  R  R  P  S  V  M  L  L  Y  P  L  *  V  F  V  F  L  Y  L  F  *  Y  T  C  F  V  L  F  Y  T  T  *  F  Q  F  R  E  L  N  S  S  V  T  V  F  F  F  S  L  F  M  I  K  I  C  I  S  S  G  Y  R  E  Y  V  K  V  G  *  *  A  M  A  C  L  L  D  S  L  F  F  S  H  S  Y  G  D  A  P  S  T  H  A  S  M  V  S  N  V  L  S  *  *  L  P  C  N  *  L  G  *  L  *  I  R  K  K  I  V  L  T  C  S  K  L  V  C  S  I  F  M  *  V  L  G  L  I  V  G  Y  L  F  G  M  I  *  S  *  Q  W  *  H  G  L  F  F  P  S  S  G  E  L  L  L  F  M  R  S  L  L  G  K  N  S  S  T  N  M  E  L  </second_frame>
            <third_frame>   L  F  F  S  C  S  N  K  S  F  V  F  F  Q  *  S  W  V  N  S  *  L  S  *  L  T  F  I  H  L  P  G  K  Y  F  S  Y  Y  T  F  S  F  V  F  P  L  *  F  L  L  K  L  *  S  P  S  D  I  Y  A  G  H  P  *  C  C  F  I  L  C  K  Y  L  Y  S  F  T  S  F  S  I  L  A  L  F  Y  F  I  Q  H  S  F  N  F  E  S  *  T  A  L  L  P  S  F  F  F  L  S  L  *  *  R  Y  A  S  V  V  A  I  E  S  T  S  K  L  D  D  E  Q  W  L  A  Y  W  I  L  Y  S  F  L  T  L  M  E  M  L  L  Q  P  M  L  Q  W  *  V  T  F  *  V  S  N  Y  L  V  I  D  W  V  S  C  R  F  E  K  K  S  C  *  H  A  Q  N  S  Y  V  Q  F  L  C  K  Y  L  V  *  L  *  D  T  Y  L  V  *  F  E  A  S  N  G  S  M  A  C  S  S  P  V  Q  G  S  C  F  Y  L  *  E  V  C  *  G  K  T  H  Q  Q  I  W  S  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0113N10.1" strand="+"/>
                <serials PGL_serial="21" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="120703" stop="120996"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>291</number_coding_nucleotides>
                  <number_encoded_amino_acids>97</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ILDSHDSPSYTCRVNILVIILFHLYFLFNFSLNYNLLLIYTQAIRDVALSSVSICIPLPLLVYLLCFILYNIVSISRVKQLCYRLFFFSLYDKDMHQ*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0113N10.1" strand="+"/>
                <serials PGL_serial="21" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="121141" stop="121359"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>219</number_coding_nucleotides>
                  <number_encoded_amino_acids>73</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LIGLVVDSKKNRVNMLKTRMFNFYVSTWFNCRIPIWYDLKLAMVAWLVLPQFRGAAFIYEKFVREKLINKYGA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="22" PGL_strand="+" PGL_start="122343" PGL_stop="124807"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="122343" e_stop="122683"/>
            <exon e_start="122976" e_stop="123168"/>
            <exon e_start="123283" e_stop="123368"/>
            <exon e_start="123839" e_stop="123970"/>
            <exon e_start="124059" e_stop="124223"/>
            <exon e_start="124392" e_stop="124807"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.944" e_score="1.000"/>
          <exon-intron don_prob="0.928" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.946" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.992" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="122343" e_stop="122683" e_length="341"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.944">
            <gDNA_intron_boundary i_start="122684" i_stop="122975" i_length="292"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="122976" e_stop="123168" e_length="193"/>
          </exon>
          <intron i_serial="2" don_prob="0.928" acc_prob="1.000">
            <gDNA_intron_boundary i_start="123169" i_stop="123282" i_length="114"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="123283" e_stop="123368" e_length="86"/>
          </exon>
          <intron i_serial="3" don_prob="0.946" acc_prob="0.992">
            <gDNA_intron_boundary i_start="123369" i_stop="123838" i_length="470"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="123839" e_stop="123970" e_length="132"/>
          </exon>
          <intron i_serial="4" don_prob="0.991" acc_prob="0.990">
            <gDNA_intron_boundary i_start="123971" i_stop="124058" i_length="88"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="124059" e_stop="124223" e_length="165"/>
          </exon>
          <intron i_serial="5" don_prob="0.995" acc_prob="0.992">
            <gDNA_intron_boundary i_start="124224" i_stop="124391" i_length="168"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="124392" e_stop="124807" e_length="416"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122343" stop="122683"/>
              <exon start="122976" stop="123168"/>
              <exon start="123283" stop="123368"/>
              <exon start="123839" stop="123970"/>
              <exon start="124059" stop="124077"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718503" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122348" stop="122683"/>
              <exon start="122976" stop="123168"/>
              <exon start="123283" stop="123368"/>
              <exon start="123839" stop="123970"/>
              <exon start="124059" stop="124223"/>
              <exon start="124392" stop="124807"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745265" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122379" stop="122683"/>
              <exon start="122976" stop="123168"/>
              <exon start="123283" stop="123368"/>
              <exon start="123839" stop="123970"/>
              <exon start="124059" stop="124124"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720601" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122425" stop="122683"/>
              <exon start="122976" stop="123168"/>
              <exon start="123283" stop="123368"/>
              <exon start="123839" stop="123970"/>
              <exon start="124059" stop="124130"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705897" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122434" stop="122683"/>
              <exon start="122976" stop="123168"/>
              <exon start="123283" stop="123368"/>
              <exon start="123839" stop="123970"/>
              <exon start="124059" stop="124219"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704075" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122481" stop="122683"/>
              <exon start="122976" stop="123168"/>
              <exon start="123283" stop="123368"/>
              <exon start="123839" stop="123970"/>
              <exon start="124059" stop="124202"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720827" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123134" stop="123168"/>
              <exon start="123283" stop="123368"/>
              <exon start="123839" stop="123970"/>
              <exon start="124059" stop="124223"/>
              <exon start="124392" stop="124712"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711944" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124065" stop="124223"/>
              <exon start="124392" stop="124807"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711723" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="22" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATCTTTATGTTTTGCTTTTATCAAGGATAAGAATACTACTCTTTCTGTTTTTTGTTTTTTCTTTTCTTTTCATTATCTTAAACGTTTGCAGGTTTTAGAGTCCATAAATATAATTTCACTTGTTTGAGTCTGAGCTAGCCCAAATCATTAGTATGTTGGTTGAACTAATTCACAAGTTTCTCAATTTAGTAGCTCCTCCAGTTTCTTTCTTCAGCTTGCTTCTTTTCTTGCCACCTTTTCAATTTTTCAAGTGTGTTCTCTCAATTTTGGGCACACTTTTTAGTGAAGATGTTGCTGGAAAGGTCGTCATTATCACTGGGGCTTCATCTGGCATTGGCGAG : TATCTGGCATATGAGTACGCCAAAAGAGGAGCATGTTTAACTCTTGCAGCCAGAAGAGATAGAAGTTTGAATGAAGTGGCCGAAGGGGCACGTGAACTAGGCTCACCAGATGTTATAACAATTCAAGCTGATGTTTCGAAAGCCGAAGACTGTAGAAGGATTGTTGATCAAACCATGAGTCACTTTGGCCGAC : TGGACCATCTGGTTAATAATGCTGGAGTGCACGCGATTGCTCTGTTTGAAGATACAGAGGATGTCACTGATTTTAAATCTGTCATG : GACATCAACTTCTGGGGTTCTGTTTACATGACTCGCTTTGCGATTCCATATCTTAGGTATAGTGGGGGAAGGATCATTGTGCTTTCCTCATCTGCTTCTTGGCTGCCTGCTCCAAGATCAAGCTTTTATAAT : GCAAGCAAAGCAGCAGTATCTCAATTCTTTGAGACGTTAAGGATTGAGCTGGGGCAGGACATCAAAATAACTCTGGTGACGCCTGGCTTTGTTGAATCTGAACTAACGCAAGGCAAATACATCGGTAAGGGTGGCGATGTAGAGGTTGATCAAGGAATGAGGGAT : GTATTCATAGGCGCGACTCCAGTAGCCAAAGTTGAATCATGTGCCAAGACAATTGTCAATAGTGCTTGCCGAGGTGAAAGGTATGTTACAATACCATCTTGGTTTCGGGTTAGCTACTTGTGGAAGGTGTTTGCCCCGGAGGTGTTAGAATGGATGTACAGGCTGATGCATCTCACCGGAACTTCACCAGAGGATGCACTTAGCAAGAAAGTAGCGGATTATACCGGCGCGCAAAACGTGTTGTATCCCGAGACTATCAGGACTGGAGAAACAAAGACTGATTAATGTTGTGATGTAAAAAGAGGTAGTAAGTGTTTGTATCGTCTCCTGTAATTTCCTAAATCACGAGTTTCAATTAGAAAGACCTTTGTGTGGTTGTTTGTATTGTGACTATGAATAAAATTGAGCATGTTTCA</gDNA_template>
            <first_frame> I  F  M  F  C  F  Y  Q  G  *  E  Y  Y  S  F  C  F  L  F  F  L  F  F  S  L  S  *  T  F  A  G  F  R  V  H  K  Y  N  F  T  C  L  S  L  S  *  P  K  S  L  V  C  W  L  N  *  F  T  S  F  S  I  *  *  L  L  Q  F  L  S  S  A  C  F  F  S  C  H  L  F  N  F  S  S  V  F  S  Q  F  W  A  H  F  L  V  K  M  L  L  E  R  S  S  L  S  L  G  L  H  L  A  L  A  S :   I  W  H  M  S  T  P  K  E  E  H  V  *  L  L  Q  P  E  E  I  E  V  *  M  K  W  P  K  G  H  V  N  *  A  H  Q  M  L  *  Q  F  K  L  M  F  R  K  P  K  T  V  E  G  L  L  I  K  P  *  V  T  L  A  D  :  W  T  I  W  L  I  M  L  E  C  T  R  L  L  C  L  K  I  Q  R  M  S  L  I  L  N  L  S  W :   T  S  T  S  G  V  L  F  T  *  L  A  L  R  F  H  I  L  G  I  V  G  E  G  S  L  C  F  P  H  L  L  L  G  C  L  L  Q  D  Q  A  F  I  M :   Q  A  K  Q  Q  Y  L  N  S  L  R  R  *  G  L  S  W  G  R  T  S  K  *  L  W  *  R  L  A  L  L  N  L  N  *  R  K  A  N  T  S  V  R  V  A  M  *  R  L  I  K  E  *  G  M :   Y  S  *  A  R  L  Q  *  P  K  L  N  H  V  P  R  Q  L  S  I  V  L  A  E  V  K  G  M  L  Q  Y  H  L  G  F  G  L  A  T  C  G  R  C  L  P  R  R  C  *  N  G  C  T  G  *  C  I  S  P  E  L  H  Q  R  M  H  L  A  R  K  *  R  I  I  P  A  R  K  T  C  C  I  P  R  L  S  G  L  E  K  Q  R  L  I  N  V  V  M  *  K  E  V  V  S  V  C  I  V  S  C  N  F  L  N  H  E  F  Q  L  E  R  P  L  C  G  C  L  Y  C  D  Y  E  *  N  *  A  C  F  </first_frame>
            <second_frame>  S  L  C  F  A  F  I  K  D  K  N  T  T  L  S  V  F  C  F  F  F  S  F  H  Y  L  K  R  L  Q  V  L  E  S  I  N  I  I  S  L  V  *  V  *  A  S  P  N  H  *  Y  V  G  *  T  N  S  Q  V  S  Q  F  S  S  S  S  S  F  F  L  Q  L  A  S  F  L  A  T  F  S  I  F  Q  V  C  S  L  N  F  G  H  T  F  *  *  R  C  C  W  K  G  R  H  Y  H  W  G  F  I  W  H  W  R   : V  S  G  I  *  V  R  Q  K  R  S  M  F  N  S  C  S  Q  K  R  *  K  F  E  *  S  G  R  R  G  T  *  T  R  L  T  R  C  Y  N  N  S  S  *  C  F  E  S  R  R  L  *  K  D  C  *  S  N  H  E  S  L  W  P  T :   G  P  S  G  *  *  C  W  S  A  R  D  C  S  V  *  R  Y  R  G  C  H  *  F  *  I  C  H   : G  H  Q  L  L  G  F  C  L  H  D  S  L  C  D  S  I  S  *  V  *  W  G  K  D  H  C  A  F  L  I  C  F  L  A  A  C  S  K  I  K  L  L  *   : C  K  Q  S  S  S  I  S  I  L  *  D  V  K  D  *  A  G  A  G  H  Q  N  N  S  G  D  A  W  L  C  *  I  *  T  N  A  R  Q  I  H  R  *  G  W  R  C  R  G  *  S  R  N  E  G   : C  I  H  R  R  D  S  S  S  Q  S  *  I  M  C  Q  D  N  C  Q  *  C  L  P  R  *  K  V  C  Y  N  T  I  L  V  S  G  *  L  L  V  E  G  V  C  P  G  G  V  R  M  D  V  Q  A  D  A  S  H  R  N  F  T  R  G  C  T  *  Q  E  S  S  G  L  Y  R  R  A  K  R  V  V  S  R  D  Y  Q  D  W  R  N  K  D  *  L  M  L  *  C  K  K  R  *  *  V  F  V  S  S  P  V  I  S  *  I  T  S  F  N  *  K  D  L  C  V  V  V  C  I  V  T  M  N  K  I  E  H  V  S </second_frame>
            <third_frame>   L  Y  V  L  L  L  S  R  I  R  I  L  L  F  L  F  F  V  F  S  F  L  F  I  I  L  N  V  C  R  F  *  S  P  *  I  *  F  H  L  F  E  S  E  L  A  Q  I  I  S  M  L  V  E  L  I  H  K  F  L  N  L  V  A  P  P  V  S  F  F  S  L  L  L  F  L  P  P  F  Q  F  F  K  C  V  L  S  I  L  G  T  L  F  S  E  D  V  A  G  K  V  V  I  I  T  G  A  S  S  G  I  G  E  :  Y  L  A  Y  E  Y  A  K  R  G  A  C  L  T  L  A  A  R  R  D  R  S  L  N  E  V  A  E  G  A  R  E  L  G  S  P  D  V  I  T  I  Q  A  D  V  S  K  A  E  D  C  R  R  I  V  D  Q  T  M  S  H  F  G  R   : L  D  H  L  V  N  N  A  G  V  H  A  I  A  L  F  E  D  T  E  D  V  T  D  F  K  S  V  M  :  D  I  N  F  W  G  S  V  Y  M  T  R  F  A  I  P  Y  L  R  Y  S  G  G  R  I  I  V  L  S  S  S  A  S  W  L  P  A  P  R  S  S  F  Y  N  :  A  S  K  A  A  V  S  Q  F  F  E  T  L  R  I  E  L  G  Q  D  I  K  I  T  L  V  T  P  G  F  V  E  S  E  L  T  Q  G  K  Y  I  G  K  G  G  D  V  E  V  D  Q  G  M  R  D  :  V  F  I  G  A  T  P  V  A  K  V  E  S  C  A  K  T  I  V  N  S  A  C  R  G  E  R  Y  V  T  I  P  S  W  F  R  V  S  Y  L  W  K  V  F  A  P  E  V  L  E  W  M  Y  R  L  M  H  L  T  G  T  S  P  E  D  A  L  S  K  K  V  A  D  Y  T  G  A  Q  N  V  L  Y  P  E  T  I  R  T  G  E  T  K  T  D  *  C  C  D  V  K  R  G  S  K  C  L  Y  R  L  L  *  F  P  K  S  R  V  S  I  R  K  T  F  V  W  L  F  V  L  *  L  *  I  K  L  S  M  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0113N10.1" strand="+"/>
                <serials PGL_serial="22" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="122456" stop="122683"/>
                    <exon start="122976" stop="123168"/>
                    <exon start="123283" stop="123368"/>
                    <exon start="123839" stop="123970"/>
                    <exon start="124059" stop="124223"/>
                    <exon start="124392" stop="124676"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1086</number_coding_nucleotides>
                  <number_encoded_amino_acids>362</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FHLFESELAQIISMLVELIHKFLNLVAPPVSFFSLLLFLPPFQFFKCVLSILGTLFSEDVAGKVVIITGASSGIGEYLAYEYAKRGACLTLAARRDRSLNEVAEGARELGSPDVITIQADVSKAEDCRRIVDQTMSHFGRLDHLVNNAGVHAIALFEDTEDVTDFKSVMDINFWGSVYMTRFAIPYLRYSGGRIIVLSSSASWLPAPRSSFYNASKAAVSQFFETLRIELGQDIKITLVTPGFVESELTQGKYIGKGGDVEVDQGMRDVFIGATPVAKVESCAKTIVNSACRGERYVTIPSWFRVSYLWKVFAPEVLEWMYRLMHLTGTSPEDALSKKVADYTGAQNVLYPETIRTGETKTD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 311 chains have been computed
$ 
$ memory statistics:
$ 834024 bytes spliced alignments in total
$ 203 spliced alignments have been stored
$ 4108 bytes was the average size of a spliced alignment
$ 35808 bytes predicted gene locations in total
$ 22 predicted gene locations have been stored
$ 1627 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 354 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-16 11:41:56
-->
