<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-17 08:39:57"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C06SLm0127C05-mUEoa/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C06SLm0127C05-mUEoa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0127C05-mUEoa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U314773" ref_strand="+" ref_description="SGN-U314773        Tomato 200607 #1 [12 ESTs aligned] arabidopsis/peptide: | Symbol: None | nucleotide diphosphate kinase II, chloroplast (NDPK2), identical to SP:O64903 Nucleoside diphosphate kinase II, chloroplast precursor (NDK II) (NDP kinase II) (NDPK II) (NDPK Ia) (Arabidopsis thaliana); contains Pfam PF00334 : Nucleoside diphosphate kinase domain; contains Pfam profile PF00334: Nucleoside diphosphate kinase | chr5:25389130-25391081 REVERSE | Aliases: MDC12.28, MDC12_28(evalue: 3e-84, score=308) genbank/nr: gi|27807824|dbj|BAC55280.1| nucleoside diphosphate kinase [Nicotiana tabacum](evalue: 1e-95, score=352)">
      <seq>atatggaaggtcttacaatagttggagcaactccttgtgtttcttcttcacttcgtagaatctcttccaaaacaacctgtttggcctccagacttaccccaaaatccgtcaagaagcacagcctagctgcattgcaaccagcattttatcttttctcaacaaatgtccccaaaaggcaaattagagctcgtatattcttaccccatttggttgcttctatggaagaagtggagcagacttatatcatgattaagcctgatggtgttcagagaggccttgttggagaaattatatccagatttgagagaaaagggtttaagctaactggattaaagctttttcagtgccccaaagaattagcggaggagcattacaaggatctacagtccaagccattcttccccaagctgattgactacattacatctggtccagttgtctgtatggcttgggagggtgttggtgttgttgcttcagcacgaaagctaataggagcaactaatcctcttaatgctgagccaggcacaattagaggagaccttgctgttcaaactggaagaaatgtggtgcatggaagtgatagccccgacaatggcaagcgtgaaataggtctttggtttaatgaaggtgaattatgtgcatgggcagcagctctagaaccttggttggtggaataatatatgattcttcattttaagttttggaggtttgagcttaatcacttgttcggcatatgtaatacaaaaatacaagcactgtcattgtatcatttccagcatggttggcctgtttgtagtaagagtctaagagcggctcactacgtgatattttttcaagttttccaacttgatgtcaaactacagaattaaatttgtagttcttctgtaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0127C05-mUEoa/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06SLm0127C05.1" temp_strand="+" temp_description="C06SLm0127C05.1  AC226020.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0127C05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="8181" stop="11817"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8481" g_stop="8701" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="221" r_length="221" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8702" i_stop="8944" i_length="243">
            <donor d_prob="0.783" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8945" g_stop="9001" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="278" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9002" i_stop="9127" i_length="126">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9128" g_stop="9214" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="365" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="9215" i_stop="10047" i_length="833">
            <donor d_prob="0.929" d_score="1.00"/>
            <acceptor a_prob="0.921" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="10048" g_stop="10128" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="446" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="10129" i_stop="10277" i_length="149">
            <donor d_prob="0.903" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="10278" g_stop="10390" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="447" r_stop="559" r_length="113" r_score="0.991"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="10391" i_stop="10511" i_length="121">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="10512" g_stop="10561" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="560" r_stop="609" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="10562" i_stop="11227" i_length="666">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="11228" g_stop="11514" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="610" r_stop="884" r_length="275" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="887" polyA_stop="900"/>
      <MATCH_line gen_id="C06SLm0127C05.1" gen_strand="+" ref_id="SGN-U314773" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>896</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0127C05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U314773" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8481" e_stop="8701"/>
          <exon e_start="8945" e_stop="9001"/>
          <exon e_start="9128" e_stop="9214"/>
          <exon e_start="10048" e_stop="10128"/>
          <exon e_start="10278" e_stop="10390"/>
          <exon e_start="10512" e_stop="10561"/>
          <exon e_start="11228" e_stop="11514"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATGGAAGGTCTTACAATAGTTGGAGCAACTCCTTGTGTTTCTTCTTCACTTCGTAGAATCTCTTCCAAAACAACCTGTTTGGCCTCCAGACTTACCCCAAAATCCGTCAAGAAGCACAGCCTAGCTGCATTGCAACCAGCATTTTATCTTTTCTCAACAAATGTCCCCAAAAGGCAAATTAGAGCTCGTATATTCTTACCCCATTTGGTTGCTTCTATGGTAAGAAGTTCGATTACAACAATTTCTTGACTACCCATTGAAGATTTTGCCCAACCCCACTTTCTCTTTTCTTCATATAAATTCTGTCCCTACAACTTGGGTTGAAAAAGTGTAATTTTTGTTAAATTTTCAAATGGGTACAGAGGATTCTGTATTGCAGGCCCTCAACTGATTTAGGATTGAGGTTTGCTGATTGATTGATTGATTTTATTTTTGGCTGTTTTTGGGGATTTTGTGTTTCAGGAAGAAGTGGAGCAGACTTATATCATGATTAAGCCTGATGGTGTTCAGAGAGGCCTTGTATGCTTCAGTATATTCTTCTTTCTTTGAGTTTGGATTATTAGAAAGACTTTAACTTTATGGTTTTGGCCAGGTTTTTTGATCTTCTGTTTGAATTTTGAAGATGTGTTTCCTTAATTGTTATAGGTTGGAGAAATTATATCCAGATTTGAGAGAAAAGGGTTTAAGCTAACTGGATTAAAGCTTTTTCAGTGCCCCAAAGAATTAGCGGAGGTTTGCTTTCATGAGCTCGATAATTTTTTTTTCAACAATTGACATTTCTATGCACTACTTTGTGTTCTTGTTCTTCTCTTGTAGGATTTGCACTGCTCCCCTAGTTAGTTGCTATGTTTTCTGATTCTAAGTGCACTTGCTACACTTGAGCCAAGGCCCGAGGGTCTTTCAGAAACCTCTCTACCTCCATGAGGTAGTGGTAAGGTCTGCTTCCACTCCCCAGACCCCACTTTTGGGATTCCATGGGGTATGTTGTTGTTGACATTTCCATGCAAGCATACTCCCCCTGGGTTCCCACAACCTCCCACTGAAAAAAGAAAAAAGGAAGAAAACATGTATTTCTTAATGTCTAAGAGATTCATGAACTGCTTTTTTTTTCAGATGTCCAAAAGTTTTTCCTCTATCTAACGAGGTTCATTTAATTCACTGGTTACCCTAATGCTATGAACCAATATGATTGTCTTGGTTCCAGTTGACTTACATAAAGATTGGAATTTGTAAAGTTGGACAGAATTCAATTTCAAAATTTGTATTTTGTTTGGACTACAAGACACGAAACTAATAGAAAAACAAATAATTTATGGAATAGTTAAGGATTGGAAGGTTTATGTACCAGAAGAAATCTTTAAGGGTGGGTGGAGTTGGGTGCCAAGGGAGCTTCTTACTAGCAGTTGCTTCTATTTATATCGTTGAGAATTCTTTTGTATTTCTTTTAACAGCACTACGATTATCTTTGCTTTATCAACCAAAAGAGAATTAAGATTTCCGAGTCAATTCATTCCTATTAACTGTGCCGTGTGGTTTAGTTGCTTAGAAGTTTTCAATTGTTACAGGAGCATTACAAGGATCTACAGTCCAAGCCATTCTTCCCCAAGCTGATTGACTACATTACATCTGGTCCAGTTGTCTGTATGGTAGAAATTCTTCCCATTTAACTCTCATTTCTGTCATTCACTTGGTCAAACCAATCAAATATATCAGCATAACATGAGTTTTAAACTGTATAATGTCTCCTACAGTCTGTATATTTGCTAATCTTGTAAATTGTATCTATTTTGGCAAGGCTTGGGAGGGTGTTGGTGTTGTTGCTTCAGCACGAAAGCTAATAGGAGCAACTAATCCTCTTAATGCTGAACCAGGCACAATTAGAGGAGACCTTGCTGTTCAAACTGGAAGGTAGGGCCATATATATTTGTTATTTTATTTGTTTGTACATGTTCAGCAAGTATTGAGTCATGGTGCTATAAGCTTTTGATGTTGATAAATTTACAAGATTTTGATGGCAATCTATGTGCAGAAATGTGGTGCATGGAAGTGATAGCCCCGACAATGGCAAGCGTGAAATAGGTAAGGGTTTTCCTAATTTAGCAAAACTAGTTGAGTAGCATGTAGAATTAACTTAATGTGACTTCCCCCACATGTTACTAAGTTTGGTCACCCGCCTTTGAGCTGTTAGCTGGACATACAGTAGAATCTTTACAGAAGTTCAGTTGTAGTACCTATAAGAGAAATCAAAAGGAAACAGCAAGAGTTCTTTTTATTTTTCTTGTTTTAGATATCCCCCCTCCCGGAAAAAATAAGTTTAAGTATTATTAAAGCTAGCTCCAAAGACACTGATAGTTGTAGGTCTTGCTTTGAGTGCCTTTTGCTAGATAGTTTTTCTCCAATGTGAATACACTTGTGTTCATTTTTAGCACCATAGTGATAATTAAGCATTTTGTCTATTCTCTTGTGCCTAATCACTAATTTGTGATTGAGGAATTGGTGATTTATTGGTCTCCTGCCTATCCATTCTGCAAGGTGTATATGGAGGAAAATAGCCTAGTTGTTTTTTGCCCTCTACTATAAGATTTGTATGCTGATAGTGAGTGGTAGTTCTTGGAAATTCTCTCACACACAATTGAAGCTGAAATCTACCTTTAGCAGAACACTTTAGTTTGTTCTTCTAGAAAAAATTAAGTTGGCCTTGATTCTCATTTAATTAGTGTTTTTCCTTATGTTTCCTTGCTGCAGGTCTTTGGTTTAATGAAGGTGAATTATGTGCATGGGCAGCAGCTCTAGAACCTTGGTTGGTAGAATAATACCTTAGCGTAGTTATATGATTCTTCATTTAAGTTTTGGAGGTTTGAGCTTAATCACTTGTTCGGCATATGTAATGCAAAAATACAAGCACTGTCATTGTATCATTTCCAGCATGGTTGGCCGGTTTATAGTAAGAGTCTAAGAGCGGCTCACTACGTGATATTTTTTCAAGTTTTCC-ACTTGATGTCAAACTGCAGAATTAAATTTGTAGTTCTTCT</genome_strand>
        <mrna_strand>ATATGGAAGGTCTTACAATAGTTGGAGCAACTCCTTGTGTTTCTTCTTCACTTCGTAGAATCTCTTCCAAAACAACCTGTTTGGCCTCCAGACTTACCCCAAAATCCGTCAAGAAGCACAGCCTAGCTGCATTGCAACCAGCATTTTATCTTTTCTCAACAAATGTCCCCAAAAGGCAAATTAGAGCTCGTATATTCTTACCCCATTTGGTTGCTTCTATG...................................................................................................................................................................................................................................................GAAGAAGTGGAGCAGACTTATATCATGATTAAGCCTGATGGTGTTCAGAGAGGCCTT..............................................................................................................................GTTGGAGAAATTATATCCAGATTTGAGAGAAAAGGGTTTAAGCTAACTGGATTAAAGCTTTTTCAGTGCCCCAAAGAATTAGCGGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCATTACAAGGATCTACAGTCCAAGCCATTCTTCCCCAAGCTGATTGACTACATTACATCTGGTCCAGTTGTCTGTATG.....................................................................................................................................................GCTTGGGAGGGTGTTGGTGTTGTTGCTTCAGCACGAAAGCTAATAGGAGCAACTAATCCTCTTAATGCTGAGCCAGGCACAATTAGAGGAGACCTTGCTGTTCAAACTGGAAG.........................................................................................................................AAATGTGGTGCATGGAAGTGATAGCCCCGACAATGGCAAGCGTGAAATAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTTTGGTTTAATGAAGGTGAATTATGTGCATGGGCAGCAGCTCTAGAACCTTGGTTGGTGGAATAATA---TA---T-G--AT-T-CTTCAT--TTTAAGTTTTGGAGGTTTGAGCTTAATCACTTGTTCGGCATATGTAATACAAAAATACAAGCACTGTCATTGTATCATTTCCAGCATGGTTGGCCTGTTTGTAGTAAGAGTCTAAGAGCGGCTCACTACGTGATATTTTTTCAAGTTTTCCAACTTGATGTCAAACTACAGAATTAAATTTGTAGTTCTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0127C05-mUEoa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U314771" ref_strand="+" ref_description="SGN-U314771        Tomato 200607 #1 [6 ESTs aligned] arabidopsis/peptide: | Symbol: None | nucleotide diphosphate kinase II, chloroplast (NDPK2), identical to SP:O64903 Nucleoside diphosphate kinase II, chloroplast precursor (NDK II) (NDP kinase II) (NDPK II) (NDPK Ia) (Arabidopsis thaliana); contains Pfam PF00334 : Nucleoside diphosphate kinase domain; contains Pfam profile PF00334: Nucleoside diphosphate kinase | chr5:25389130-25391081 REVERSE | Aliases: MDC12.28, MDC12_28(evalue: 2e-79, score=292) genbank/nr: gi|27807824|dbj|BAC55280.1| nucleoside diphosphate kinase [Nicotiana tabacum](evalue: 7e-86, score=319)">
      <seq>caacaaatgtccccaaaaggcaaattagagctcgtatattcttaccccatttggttgcttctatggaagaagtggagcagacttatatcatgattaagcctgatggtgttcagagaggccttgttggagaaattatatccagatttgagagaaaagggtttaagctaactggattaaagctttttcagtgccccaaagaattagcggaggagcattacaaggatctacagtccaagccattcttccccaagctgattgactacattacatctggtccagttgtctgtatggcttgggagggtgttggtgttgttgcttcagcacgaaagctaataggagcaactaatcctcttaatgctgaaccaggcacaattagaggagaccttgctgttcaaactggaagaaatgtggtgcatggaagtgatagccccgacaatggcaagcgtgaaataggtctttggtttaatgaaggtgaattatgtgcatgggcagcagctctagaaccttggttggtagaataataccttagcgtagttatatgattcttcatttaagttttggaggtttgagcttaatcacttgttcggcatatgtaatgcaaaaatacaagcactgtcattgtatcatttccagcatggttggccggtttatagtaagagtctaagagcggctcactacgtgatattttttcaagttttccacttgatgtcaaactgcagaattaaatttgtagttcttctgaaaaaaaaaaaaaaaaaactcgaggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0127C05-mUEoa/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06SLm0127C05.1" temp_strand="+" temp_description="C06SLm0127C05.1  AC226020.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0127C05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="8337" stop="11817"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8637" g_stop="8701" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8702" i_stop="8944" i_length="243">
            <donor d_prob="0.783" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8945" g_stop="9001" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="122" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9002" i_stop="9127" i_length="126">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9128" g_stop="9214" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="209" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="9215" i_stop="10047" i_length="833">
            <donor d_prob="0.929" d_score="1.00"/>
            <acceptor a_prob="0.921" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="10048" g_stop="10128" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="290" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="10129" i_stop="10277" i_length="149">
            <donor d_prob="0.903" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="10278" g_stop="10390" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="403" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="10391" i_stop="10511" i_length="121">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="10512" g_stop="10561" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="453" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="10562" i_stop="11227" i_length="666">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="11228" g_stop="11514" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="454" r_stop="740" r_length="287" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="742" polyA_stop="760"/>
      <MATCH_line gen_id="C06SLm0127C05.1" gen_strand="+" ref_id="SGN-U314771" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>740</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0127C05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U314771" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8637" e_stop="8701"/>
          <exon e_start="8945" e_stop="9001"/>
          <exon e_start="9128" e_stop="9214"/>
          <exon e_start="10048" e_stop="10128"/>
          <exon e_start="10278" e_stop="10390"/>
          <exon e_start="10512" e_stop="10561"/>
          <exon e_start="11228" e_stop="11514"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACAAATGTCCCCAAAAGGCAAATTAGAGCTCGTATATTCTTACCCCATTTGGTTGCTTCTATGGTAAGAAGTTCGATTACAACAATTTCTTGACTACCCATTGAAGATTTTGCCCAACCCCACTTTCTCTTTTCTTCATATAAATTCTGTCCCTACAACTTGGGTTGAAAAAGTGTAATTTTTGTTAAATTTTCAAATGGGTACAGAGGATTCTGTATTGCAGGCCCTCAACTGATTTAGGATTGAGGTTTGCTGATTGATTGATTGATTTTATTTTTGGCTGTTTTTGGGGATTTTGTGTTTCAGGAAGAAGTGGAGCAGACTTATATCATGATTAAGCCTGATGGTGTTCAGAGAGGCCTTGTATGCTTCAGTATATTCTTCTTTCTTTGAGTTTGGATTATTAGAAAGACTTTAACTTTATGGTTTTGGCCAGGTTTTTTGATCTTCTGTTTGAATTTTGAAGATGTGTTTCCTTAATTGTTATAGGTTGGAGAAATTATATCCAGATTTGAGAGAAAAGGGTTTAAGCTAACTGGATTAAAGCTTTTTCAGTGCCCCAAAGAATTAGCGGAGGTTTGCTTTCATGAGCTCGATAATTTTTTTTTCAACAATTGACATTTCTATGCACTACTTTGTGTTCTTGTTCTTCTCTTGTAGGATTTGCACTGCTCCCCTAGTTAGTTGCTATGTTTTCTGATTCTAAGTGCACTTGCTACACTTGAGCCAAGGCCCGAGGGTCTTTCAGAAACCTCTCTACCTCCATGAGGTAGTGGTAAGGTCTGCTTCCACTCCCCAGACCCCACTTTTGGGATTCCATGGGGTATGTTGTTGTTGACATTTCCATGCAAGCATACTCCCCCTGGGTTCCCACAACCTCCCACTGAAAAAAGAAAAAAGGAAGAAAACATGTATTTCTTAATGTCTAAGAGATTCATGAACTGCTTTTTTTTTCAGATGTCCAAAAGTTTTTCCTCTATCTAACGAGGTTCATTTAATTCACTGGTTACCCTAATGCTATGAACCAATATGATTGTCTTGGTTCCAGTTGACTTACATAAAGATTGGAATTTGTAAAGTTGGACAGAATTCAATTTCAAAATTTGTATTTTGTTTGGACTACAAGACACGAAACTAATAGAAAAACAAATAATTTATGGAATAGTTAAGGATTGGAAGGTTTATGTACCAGAAGAAATCTTTAAGGGTGGGTGGAGTTGGGTGCCAAGGGAGCTTCTTACTAGCAGTTGCTTCTATTTATATCGTTGAGAATTCTTTTGTATTTCTTTTAACAGCACTACGATTATCTTTGCTTTATCAACCAAAAGAGAATTAAGATTTCCGAGTCAATTCATTCCTATTAACTGTGCCGTGTGGTTTAGTTGCTTAGAAGTTTTCAATTGTTACAGGAGCATTACAAGGATCTACAGTCCAAGCCATTCTTCCCCAAGCTGATTGACTACATTACATCTGGTCCAGTTGTCTGTATGGTAGAAATTCTTCCCATTTAACTCTCATTTCTGTCATTCACTTGGTCAAACCAATCAAATATATCAGCATAACATGAGTTTTAAACTGTATAATGTCTCCTACAGTCTGTATATTTGCTAATCTTGTAAATTGTATCTATTTTGGCAAGGCTTGGGAGGGTGTTGGTGTTGTTGCTTCAGCACGAAAGCTAATAGGAGCAACTAATCCTCTTAATGCTGAACCAGGCACAATTAGAGGAGACCTTGCTGTTCAAACTGGAAGGTAGGGCCATATATATTTGTTATTTTATTTGTTTGTACATGTTCAGCAAGTATTGAGTCATGGTGCTATAAGCTTTTGATGTTGATAAATTTACAAGATTTTGATGGCAATCTATGTGCAGAAATGTGGTGCATGGAAGTGATAGCCCCGACAATGGCAAGCGTGAAATAGGTAAGGGTTTTCCTAATTTAGCAAAACTAGTTGAGTAGCATGTAGAATTAACTTAATGTGACTTCCCCCACATGTTACTAAGTTTGGTCACCCGCCTTTGAGCTGTTAGCTGGACATACAGTAGAATCTTTACAGAAGTTCAGTTGTAGTACCTATAAGAGAAATCAAAAGGAAACAGCAAGAGTTCTTTTTATTTTTCTTGTTTTAGATATCCCCCCTCCCGGAAAAAATAAGTTTAAGTATTATTAAAGCTAGCTCCAAAGACACTGATAGTTGTAGGTCTTGCTTTGAGTGCCTTTTGCTAGATAGTTTTTCTCCAATGTGAATACACTTGTGTTCATTTTTAGCACCATAGTGATAATTAAGCATTTTGTCTATTCTCTTGTGCCTAATCACTAATTTGTGATTGAGGAATTGGTGATTTATTGGTCTCCTGCCTATCCATTCTGCAAGGTGTATATGGAGGAAAATAGCCTAGTTGTTTTTTGCCCTCTACTATAAGATTTGTATGCTGATAGTGAGTGGTAGTTCTTGGAAATTCTCTCACACACAATTGAAGCTGAAATCTACCTTTAGCAGAACACTTTAGTTTGTTCTTCTAGAAAAAATTAAGTTGGCCTTGATTCTCATTTAATTAGTGTTTTTCCTTATGTTTCCTTGCTGCAGGTCTTTGGTTTAATGAAGGTGAATTATGTGCATGGGCAGCAGCTCTAGAACCTTGGTTGGTAGAATAATACCTTAGCGTAGTTATATGATTCTTCATTTAAGTTTTGGAGGTTTGAGCTTAATCACTTGTTCGGCATATGTAATGCAAAAATACAAGCACTGTCATTGTATCATTTCCAGCATGGTTGGCCGGTTTATAGTAAGAGTCTAAGAGCGGCTCACTACGTGATATTTTTTCAAGTTTTCCACTTGATGTCAAACTGCAGAATTAAATTTGTAGTTCTTCT</genome_strand>
        <mrna_strand>CAACAAATGTCCCCAAAAGGCAAATTAGAGCTCGTATATTCTTACCCCATTTGGTTGCTTCTATG...................................................................................................................................................................................................................................................GAAGAAGTGGAGCAGACTTATATCATGATTAAGCCTGATGGTGTTCAGAGAGGCCTT..............................................................................................................................GTTGGAGAAATTATATCCAGATTTGAGAGAAAAGGGTTTAAGCTAACTGGATTAAAGCTTTTTCAGTGCCCCAAAGAATTAGCGGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCATTACAAGGATCTACAGTCCAAGCCATTCTTCCCCAAGCTGATTGACTACATTACATCTGGTCCAGTTGTCTGTATG.....................................................................................................................................................GCTTGGGAGGGTGTTGGTGTTGTTGCTTCAGCACGAAAGCTAATAGGAGCAACTAATCCTCTTAATGCTGAACCAGGCACAATTAGAGGAGACCTTGCTGTTCAAACTGGAAG.........................................................................................................................AAATGTGGTGCATGGAAGTGATAGCCCCGACAATGGCAAGCGTGAAATAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTTTGGTTTAATGAAGGTGAATTATGTGCATGGGCAGCAGCTCTAGAACCTTGGTTGGTAGAATAATACCTTAGCGTAGTTATATGATTCTTCATTTAAGTTTTGGAGGTTTGAGCTTAATCACTTGTTCGGCATATGTAATGCAAAAATACAAGCACTGTCATTGTATCATTTCCAGCATGGTTGGCCGGTTTATAGTAAGAGTCTAAGAGCGGCTCACTACGTGATATTTTTTCAAGTTTTCCACTTGATGTCAAACTGCAGAATTAAATTTGTAGTTCTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0127C05-mUEoa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U342420" ref_strand="+" ref_description="SGN-U342420        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: hypothetical(evalue: 1e-05, score=53.1)">
      <seq>tcaaattcaaaaaaataaagaaataacagcaagtttctttgaaaacaaaataaagaaaatggtgtcaagagtggaagaagcaatgaaaataaggcagcaacaggaggtgaaaaattaccaagtacagaagcaattgatgcaatgcaacaaaggaaaaacaaataagttcaagaggagtagttctaatgttgaagaagatggtgcttcttctgctattcttttgcttgcttgtattgcttgtgccacttcccatcacctatagaataattaatcatagattatcatcaccttgttaaccaaaatattaactacatgcagtcgctaataattatccgtctctgtttcattttatataacactctttttgtttttttatctgtcaagagttcaatgtatgttccttctagtcatataatatatagaagattagtagtagctctttttggctagagatagattcatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0127C05-mUEoa/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06SLm0127C05.1" temp_strand="-" temp_description="C06SLm0127C05.1  AC226020.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0127C05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="18405" stop="17341"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18105" g_stop="17641" g_length="465"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="465" r_length="465" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0127C05.1" gen_strand="-" ref_id="SGN-U342420" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>465</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0127C05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U342420" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18105" e_stop="17641"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAATTCAAAAAAATAAAGAAATAACAGCAAGTTTCTTTGAAAACAAAATAAAGAAAATGGTGTCAAGAGTGGAAGAAGCAATGAAAATAAGGCAGCAACAGGAGGTGAAAAATTACCAAGTACAGAAGCAATTGATGCAATGCAACAAAGGAAAAACAAATAAGTTCAAGAGGAGTAGTTCTAATGTTGAAGAAGATGGTGCTTCTTCTGCTATTCTTTTGCTTGCTTGTATTGCTTGTGCCACTTCCCATCACCTATAGAATAATTAATCATAGATTATCATCACCTTGTTAACCAAAATATTAACTACATGCAGTCGCTAATAATTATCCGTCTCTGTTTCATTTTATATAACACTCTTTTTGTTTTTTTATCTGTCAAGAGTTCAATGTATGTTCCTTCTAGTCATATAATATATAGAAGATTAGTAGTAGCTCTTTTTGGCTAGAGATAGATTCATGAT</genome_strand>
        <mrna_strand>TCAAATTCAAAAAAATAAAGAAATAACAGCAAGTTTCTTTGAAAACAAAATAAAGAAAATGGTGTCAAGAGTGGAAGAAGCAATGAAAATAAGGCAGCAACAGGAGGTGAAAAATTACCAAGTACAGAAGCAATTGATGCAATGCAACAAAGGAAAAACAAATAAGTTCAAGAGGAGTAGTTCTAATGTTGAAGAAGATGGTGCTTCTTCTGCTATTCTTTTGCTTGCTTGTATTGCTTGTGCCACTTCCCATCACCTATAGAATAATTAATCATAGATTATCATCACCTTGTTAACCAAAATATTAACTACATGCAGTCGCTAATAATTATCCGTCTCTGTTTCATTTTATATAACACTCTTTTTGTTTTTTTATCTGTCAAGAGTTCAATGTATGTTCCTTCTAGTCATATAATATATAGAAGATTAGTAGTAGCTCTTTTTGGCTAGAGATAGATTCATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0127C05-mUEoa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U316115" ref_strand="+" ref_description="SGN-U316115        Tomato 200607 #1 [30 ESTs aligned] arabidopsis/peptide: | Symbol: None | glyceraldehyde-3-phosphate dehydrogenase, cytosolic (GAPC) / NAD-dependent glyceraldehyde-3-phosphate dehydrogenase, identical to SP:P25858 Glyceraldehyde 3-phosphate dehydrogenase, cytosolic (EC 1.2.1.12) {Arabidopsis thaliana} | chr3:1080960-1083537 FORWARD | Aliases: T6K12.26, T6K12_26(evalue: 2e-159, score=559) genbank/nr: gi|4539543|emb|CAB39974.1| glyceraldehyde-3-phosphate dehydrogenase [Nicotiana tabacum](evalue: 1e-162, score=576)">
      <seq>tcggccgaattttaaaacgaactccattttccttctcagttcacaaaaaaaaatcatgggcaagattaagatcggaatcaatggttttggaagaattggccgattggtggccagggtggctctacaaagagatgatgttgagctcgttgctgttaacgatcccttcatcaccgtggaatacatgacatacatgtttaagtatgacagtgttcacggtcaatggaagaacaatgagctcaaggttaaggatgagaagactcttctctttggtgagaagcctgttactgtatttggcataagaaacccagaggaaatcccatgggctgaggctggagcagagtacatcgtggagtcaactggagtcttcactgataaagacaaggctgctgcccacttgaagggtggtgctaagaaagtagttatttctgctcctagcaaggatgcacctatgtttgttgttggtgtcaatgaaaaggaatacaagccagacctcaacatcgtttctaatgctagctgtactactaactgccttgcacctctggcaaaggttattcatgacaggtttggaatcgttgagggtcttatgactacagttcactccataactgccacccagaaaactgttgatggaccatcagctaaggactggaggggaggaagagctgcatcattcaacattatccccagcagcactggagctgcaaaggctgttggaaaggtgctaccatcattgaatggaaagttaacaggaatgtctttccgagttccaacagtcgatgtctctgtggttgatctcactgtgaggttggagaaagaagccacctatgatgaaatcaaggctgctatcaaggaggagtctgaaggaaaattaaagggaattcttggatacactgaagatgacgtggtatctacagactttcttggggacaacagatcaagtatctttgacgccaaggctggaattgctttgagcaagaactttgtgaagcttgtttcttggtatgacaacgaaatgggctacagcacacgagtggtcgacttgattaagcacatggcatcagtccagtaaagtggcagttccgagtatgatggtgcgttactgagcatatttagaagaggaaaaaagctttagaataaagtaaaatgagaagctgtttgacgagtttggaggtggctgtctgtttactattgtattttcatttggggtctcttgttggattgttgttttccccaattttcaaatgtgtctgcaaaactgtctggatatgttgttttgtcttgctatcaatgtataataacgttggacccgcaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0127C05-mUEoa/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06SLm0127C05.1" temp_strand="+" temp_description="C06SLm0127C05.1  AC226020.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0127C05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="24654" stop="29086"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24954" g_stop="25001" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="59" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25002" i_stop="25130" i_length="129">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25131" g_stop="25154" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="83" r_length="24" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25155" i_stop="25273" i_length="119">
            <donor d_prob="0.976" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25274" g_stop="25374" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="184" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25375" i_stop="26281" i_length="907">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26282" g_stop="26397" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="300" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="26398" i_stop="26484" i_length="87">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26485" g_stop="26584" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="400" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="26585" i_stop="27124" i_length="540">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="27125" g_stop="27271" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="547" r_length="147" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="27272" i_stop="27358" i_length="87">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="27359" g_stop="27419" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="548" r_stop="608" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="27420" i_stop="27493" i_length="74">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="27494" g_stop="27734" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="609" r_stop="849" r_length="241" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="27735" i_stop="28003" i_length="269">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="28004" g_stop="28087" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="850" r_stop="933" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="28088" i_stop="28265" i_length="178">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="28266" g_stop="28355" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="934" r_stop="1023" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="28356" i_stop="28498" i_length="143">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="28499" g_stop="28783" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="1024" r_stop="1308" r_length="285" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1311" polyA_stop="1331"/>
      <MATCH_line gen_id="C06SLm0127C05.1" gen_strand="+" ref_id="SGN-U316115" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1297</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0127C05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U316115" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24954" e_stop="25001"/>
          <exon e_start="25131" e_stop="25154"/>
          <exon e_start="25274" e_stop="25374"/>
          <exon e_start="26282" e_stop="26397"/>
          <exon e_start="26485" e_stop="26584"/>
          <exon e_start="27125" e_stop="27271"/>
          <exon e_start="27359" e_stop="27419"/>
          <exon e_start="27494" e_stop="27734"/>
          <exon e_start="28004" e_stop="28087"/>
          <exon e_start="28266" e_stop="28355"/>
          <exon e_start="28499" e_stop="28783"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAAACGAACTCCATTTTCCTTCTCAGTTCACAAAAAAAAATCATGGGTATATCATCAGTTATCCTTTCTTTACTTGTTCTTCAATTTCTTTTTCTGCATGTATCATCATACGTTATACTTCACGGGCTTTAACTAATTCCATTTTTTCCATATCTTCTTTTGTAATTTTTTGCAGGCAAGATTAAGATCGGAATCAATGGTATATAATCTGTTGTTTTTGTCTCGTGAATTTGTTAATTTAGTGTGTTTTTCTGAATTTTCATGAAATTACTTTTTGGTTTTGGCTAAGATCGGTTTCGAATGTTGTTTTGTTTGTAGGTTTTGGAAGAATTGGCCGATTGGTGGCCAGGGTGGCTCTACAAAGAGATGATGTTGAGCTCGTTGCTGTTAACGATCCCTTCATCACCGTGGAATACATGGTAACATGGCAATTAATGATAGTTTATGAACTATGAATTAAGCTTTAATGTCAGTTTAGTTTGGGTTGATTATATGTTTTAGTTCATTTAGTTCATAAAATTGTAGTATTTAGACAATTTTATCATAATTAGACTATTTTCACATGTTATAGTTAATTACCATGATTTTTTATGAGTTAACGGTACAAAATACACTTAAATGTGTCCAAGTTTTTTGAGTTTTCTATCGGAACTATCATGTGTGTGTTTCACAAACTGTTATCAAAACACACATGAACTATCATTGTTGAGTTAAATACCTGAAATTTCAGGTAGGAAAAGTGAACTCATAGTTCAGGTGTGTTTCGATAAACATTTGGTGAAAGTTCAAGTAGGAAATTCACAGCGTGTCGGAAGCTATTACAAAATGTTATCAAAACACATGAACTATCATTGTTTGAGTTTCATACCTGAAATTTCAGGTGGGAAAAGTGAACTACTCATAGTTCTGGTGTGTTTCGATAAATGTTTGGTGATAGTTCGAGTAGGAAAATCACACATGATAGTTCAGGTAGGAATCTCAAAAAATTGGGATACTTTTAAGTCTGTTTTTGATGATCAGTGCACCTCAGTCATTAAAAAAGGGTTGTTTTTGACCCTGTAATTCTTTTTTCTTTGGCTGTTTCTTAGTTCTTCACTTTCCAGAAGTGTTGGGTCAAAGACAGCACTTTTCCTTTATTTATGCTTTGCGAAATTCACATAGTGATATTCAGTAGTAACAATATCAGTAGATCTGTTGTTTTCTGGGGCTTTAAGTCGATGGGGATTGTATATGATGATTGTTGCAGACATACATGGTCATGTGTAAGTTTACTGTTATTATTTGAGGGGTTAAGTTGATGGGTATTGTATATGATGCTTGTTGCAGACATACATGTTTAAGTATGACAGTGTTCACGGTCAATGGAAGAACAATGAGCTCAAGGTTAAGGATGAGAAGACTCTTCTCTTTGGTGAGAAGCCTGTTACTGTATTTGGCATAAGGTAAATTATGTCTCCAACTTTTCTTTATTATATGAAAAACTGCATTAGAATTTCTCTTGATTGGACTTATTGTATGGATGTCTGAAGAAACCCAGAGGAAATCCCATGGGCTGAGGCTGGAGCAGAGTACATCGTGGAGTCAACTGGAGTCTTCACTGATAAAGACAAGGCTGCTGCCCACTTGAAGGTTTGTGATCCTAAATAACTAGAGCGTTCTTATTTTGGCTTACTGTTTGTAGCTAATATTGATTTTTCAAAGTACATAGTTTGACACTCCAACATATAATCCCCCATGGCCTGAACACTTGGTGCCTGAAACCATGTAGCGAACTTTGTTTGCATTTTTTCTTTTGTACATGTTTATGTATGCATTTGTTAGTGAAGGTGCTATTCTGAGGCTTTACTCATGTACTTTTGTTTTCTTCTCCTGTCTAATCAAACTTCTGTGGAAACTTAAGGACAGAGTATGCTGTCATCTTGAAAGCAATTTAAAACTTCTCTATGTATTTTCTCGACAGGAGTCTAGGTGTTGCAGTACGCTGTTTGTATTGTCTCTATATTAGTTTTTTTTAAAATGTAAATTGATGCTAATGCGATGATGTTTGGGTGTTGACTACTTGGATTGATATGGTTATCACGTATTTCCTTGCACATTAGCTTGATTACCTGCATTGAATAGTTGGTGTTGAGTACCTGCTTAAATTTTTTTGGTTGTTGTTATTACCAGGGTGGTGCTAAGAAAGTAGTTATTTCTGCTCCTAGCAAGGATGCACCTATGTTTGTTGTTGGTGTCAATGAAAAGGAATACAAGCCAGACCTCAACATCGTTTCTAATGCTAGCTGTACTACTAACTGCCTTGCACCTCTGGCAAAGGTTCCCTTTTTTTTCTTTTGCCCTGTTCTTCATTTTAGTATTTGAGCCTATATGTGAATTTAAATGATTTCTTTTATGACTTTGCAGGTTATTCATGACAGGTTTGGAATCGTTGAGGGTCTTATGACTACAGTTCACTCCATAACTGGTAAGTATTGCTTTATGCATTAGAAGTTAATACAGCTTCTGTAGCTTGAGTACTAAGTAATTATTTTATAACAGCCACCCAGAAAACTGTTGATGGACCATCAGCTAAGGACTGGAGGGGAGGAAGAGCTGCATCATTCAACATTATCCCCAGCAGCACTGGAGCTGCAAAGGCTGTTGGAAAGGTGCTACCATCATTGAATGGAAAGTTAACAGGAATGTCTTTCCGAGTTCCAACAGTCGATGTCTCTGTGGTTGATCTCACTGTGAGGTTGGAGAAAGAAGCCACCTATGATGAAATCAAGGCTGCTATCAAGTAAGACTGTGCACTTTATTCCTTTACCCATTCCCATTCCCCTTCCCCTTCCCCTTCCCCCCTTCCCTGTAAGAAATACAAAAGTTCTGTGCTTCATTCAGTTCTGGCTAGTATTAGACTACAGGTTTCCATGGATGCAAAATACATGCAAAAAAAGGAGTCATAGTGCTGGGTGAAATAGTAGAAAAGGCCCTAGGGCTACTCAACTTGTTTTAATAGCTGCTCATTTACATTAATATGCTTTTTTTTTTGCTTTGGCATTTCATTAGGGAGGAGTCTGAAGGAAAATTAAAGGGAATTCTTGGATACACTGAAGATGACGTGGTATCTACAGACTTTCTTGGGGACAACAGGTGAGGATGTATTTCGAAGTTATGTTCCATATTATGTCTGACTCACAACAACAAATGTCTATTGCTTCTGCCAATGCATTTTCCCTGTAAATTCCTATTCCTTTGTTAACCGACCCTGCGTGAACCAGACTAGACAGCCTAAGTGTTAATTTGTAATTCAAATGAAAATAATTTGCAGATCAAGTATCTTTGACGCCAAGGCTGGAATTGCTTTGAGCAAGAACTTTGTGAAGCTTGTTTCTTGGTATGACAACGAAATGGGCTACAGGTAAATCTTAAAAATTTACTTCTCTTTGTATTTAGAGCTGCTGTCGACCCATCTTTTAGCATTCTCCTTTACAAGAACTTTGTTATTCAGCTCTTAAATGGTTTGTGATCTGCTGCTAATGTTTTTCCTTGCTGTGGTTGCAGCACACGAGTGGTCGACTTGATTAAGCACATGGCATCAGTCCAGTAAAGTGGCAGTTCCGAGTATGATGGTGCGTTACTGAGCATATTTAGAAGAGGAAAAAAGCTTTAGAATAAAGTAAAATGAGAAGCTGTTTGACGAGTTTGGAGGTGGCTGTCTGTTTACTATTGTATTTTCATTTGGGGTCTCTTGTTGGATTGTTGTTTTCCCCAATTTTCAAATGTGTCTGCAAAACTGTCTGGATATGTTGTTTTGTCTTGCTATCAATGTATAATAACGTTGGACCC</genome_strand>
        <mrna_strand>TTAAAACGAACTCCATTTTCCTTCTCAGTTCACAAAAAAAAATCATGG.................................................................................................................................GCAAGATTAAGATCGGAATCAATG.......................................................................................................................GTTTTGGAAGAATTGGCCGATTGGTGGCCAGGGTGGCTCTACAAAGAGATGATGTTGAGCTCGTTGCTGTTAACGATCCCTTCATCACCGTGGAATACATG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATACATGTTTAAGTATGACAGTGTTCACGGTCAATGGAAGAACAATGAGCTCAAGGTTAAGGATGAGAAGACTCTTCTCTTTGGTGAGAAGCCTGTTACTGTATTTGGCATAAG.......................................................................................AAACCCAGAGGAAATCCCATGGGCTGAGGCTGGAGCAGAGTACATCGTGGAGTCAACTGGAGTCTTCACTGATAAAGACAAGGCTGCTGCCCACTTGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGGTGCTAAGAAAGTAGTTATTTCTGCTCCTAGCAAGGATGCACCTATGTTTGTTGTTGGTGTCAATGAAAAGGAATACAAGCCAGACCTCAACATCGTTTCTAATGCTAGCTGTACTACTAACTGCCTTGCACCTCTGGCAAAG.......................................................................................GTTATTCATGACAGGTTTGGAATCGTTGAGGGTCTTATGACTACAGTTCACTCCATAACTG..........................................................................CCACCCAGAAAACTGTTGATGGACCATCAGCTAAGGACTGGAGGGGAGGAAGAGCTGCATCATTCAACATTATCCCCAGCAGCACTGGAGCTGCAAAGGCTGTTGGAAAGGTGCTACCATCATTGAATGGAAAGTTAACAGGAATGTCTTTCCGAGTTCCAACAGTCGATGTCTCTGTGGTTGATCTCACTGTGAGGTTGGAGAAAGAAGCCACCTATGATGAAATCAAGGCTGCTATCAA.............................................................................................................................................................................................................................................................................GGAGGAGTCTGAAGGAAAATTAAAGGGAATTCTTGGATACACTGAAGATGACGTGGTATCTACAGACTTTCTTGGGGACAACAG..................................................................................................................................................................................ATCAAGTATCTTTGACGCCAAGGCTGGAATTGCTTTGAGCAAGAACTTTGTGAAGCTTGTTTCTTGGTATGACAACGAAATGGGCTACAG...............................................................................................................................................CACACGAGTGGTCGACTTGATTAAGCACATGGCATCAGTCCAGTAAAGTGGCAGTTCCGAGTATGATGGTGCGTTACTGAGCATATTTAGAAGAGGAAAAAAGCTTTAGAATAAAGTAAAATGAGAAGCTGTTTGACGAGTTTGGAGGTGGCTGTCTGTTTACTATTGTATTTTCATTTGGGGTCTCTTGTTGGATTGTTGTTTTCCCCAATTTTCAAATGTGTCTGCAAAACTGTCTGGATATGTTGTTTTGTCTTGCTATCAATGTATAATAACGTTGGACCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0127C05-mUEoa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335494" ref_strand="+" ref_description="SGN-U335494        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | glyceraldehyde-3-phosphate dehydrogenase, cytosolic (GAPC) / NAD-dependent glyceraldehyde-3-phosphate dehydrogenase, identical to SP:P25858 Glyceraldehyde 3-phosphate dehydrogenase, cytosolic (EC 1.2.1.12) {Arabidopsis thaliana} | chr3:1080960-1083537 FORWARD | Aliases: T6K12.26, T6K12_26(evalue: 3e-103, score=371) genbank/nr: gi|18072801|emb|CAC80375.1| glyceraldehyde-3-phosphate dehydrogenase [Capsicum annuum](evalue: 1e-104, score=382)">
      <seq>attttccttctcagttcacaaaaaaaaatcctgggcaagattaagatcggaatcaatggttttggaagaattggccgattggtggccagggtggctctacaaagagatgatgttgagctcgttgctgttaacgatcccttcatcaccgtggaatacatgacatacatgtttaagtatgacagtgttcacggtcaatggaagaacaatgagctcaaggttaaggatgagaagactcttctctttggtgagaagcctgttactgtatttggcatcgtggagtcaactggagtcttcactgataaagacaaggctgctgcccacttgaagggtggtgctaagaaagtagttatttctgctcctagcaaggatgcacctatgtttgttgttggtgtcaatgaaaaggaatacaagccagacctcaacatcgtttctaatgctagctgtactactaactgccttgcacctctggcaaaggttattcatgacaggtttggaatcgttgagggtcttatgactacagttcactccataactgccacccacaaaactgttgatggaccatcacctaaggactggagggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0127C05-mUEoa/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06SLm0127C05.1" temp_strand="+" temp_description="C06SLm0127C05.1  AC226020.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0127C05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="24668" stop="27839"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24968" g_stop="25001" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25002" i_stop="25130" i_length="129">
            <donor d_prob="0.989" d_score="0.00"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25131" g_stop="25154" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="58" r_length="24" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25155" i_stop="25273" i_length="119">
            <donor d_prob="0.976" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25274" g_stop="25374" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="159" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25375" i_stop="26281" i_length="907">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26282" g_stop="26392" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="270" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="26393" i_stop="26527" i_length="135">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26528" g_stop="26584" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="327" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="26585" i_stop="27124" i_length="540">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="27125" g_stop="27271" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="474" r_length="147" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="27272" i_stop="27358" i_length="87">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="27359" g_stop="27419" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="475" r_stop="535" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="27420" i_stop="27493" i_length="74">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="27494" g_stop="27539" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="536" r_stop="581" r_length="46" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0127C05.1" gen_strand="+" ref_id="SGN-U335494" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>581</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0127C05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U335494" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24968" e_stop="25001"/>
          <exon e_start="25131" e_stop="25154"/>
          <exon e_start="25274" e_stop="25374"/>
          <exon e_start="26282" e_stop="26392"/>
          <exon e_start="26528" e_stop="26584"/>
          <exon e_start="27125" e_stop="27271"/>
          <exon e_start="27359" e_stop="27419"/>
          <exon e_start="27494" e_stop="27539"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTCCTTCTCAGTTCACAAAAAAAAATCATGGGTATATCATCAGTTATCCTTTCTTTACTTGTTCTTCAATTTCTTTTTCTGCATGTATCATCATACGTTATACTTCACGGGCTTTAACTAATTCCATTTTTTCCATATCTTCTTTTGTAATTTTTTGCAGGCAAGATTAAGATCGGAATCAATGGTATATAATCTGTTGTTTTTGTCTCGTGAATTTGTTAATTTAGTGTGTTTTTCTGAATTTTCATGAAATTACTTTTTGGTTTTGGCTAAGATCGGTTTCGAATGTTGTTTTGTTTGTAGGTTTTGGAAGAATTGGCCGATTGGTGGCCAGGGTGGCTCTACAAAGAGATGATGTTGAGCTCGTTGCTGTTAACGATCCCTTCATCACCGTGGAATACATGGTAACATGGCAATTAATGATAGTTTATGAACTATGAATTAAGCTTTAATGTCAGTTTAGTTTGGGTTGATTATATGTTTTAGTTCATTTAGTTCATAAAATTGTAGTATTTAGACAATTTTATCATAATTAGACTATTTTCACATGTTATAGTTAATTACCATGATTTTTTATGAGTTAACGGTACAAAATACACTTAAATGTGTCCAAGTTTTTTGAGTTTTCTATCGGAACTATCATGTGTGTGTTTCACAAACTGTTATCAAAACACACATGAACTATCATTGTTGAGTTAAATACCTGAAATTTCAGGTAGGAAAAGTGAACTCATAGTTCAGGTGTGTTTCGATAAACATTTGGTGAAAGTTCAAGTAGGAAATTCACAGCGTGTCGGAAGCTATTACAAAATGTTATCAAAACACATGAACTATCATTGTTTGAGTTTCATACCTGAAATTTCAGGTGGGAAAAGTGAACTACTCATAGTTCTGGTGTGTTTCGATAAATGTTTGGTGATAGTTCGAGTAGGAAAATCACACATGATAGTTCAGGTAGGAATCTCAAAAAATTGGGATACTTTTAAGTCTGTTTTTGATGATCAGTGCACCTCAGTCATTAAAAAAGGGTTGTTTTTGACCCTGTAATTCTTTTTTCTTTGGCTGTTTCTTAGTTCTTCACTTTCCAGAAGTGTTGGGTCAAAGACAGCACTTTTCCTTTATTTATGCTTTGCGAAATTCACATAGTGATATTCAGTAGTAACAATATCAGTAGATCTGTTGTTTTCTGGGGCTTTAAGTCGATGGGGATTGTATATGATGATTGTTGCAGACATACATGGTCATGTGTAAGTTTACTGTTATTATTTGAGGGGTTAAGTTGATGGGTATTGTATATGATGCTTGTTGCAGACATACATGTTTAAGTATGACAGTGTTCACGGTCAATGGAAGAACAATGAGCTCAAGGTTAAGGATGAGAAGACTCTTCTCTTTGGTGAGAAGCCTGTTACTGTATTTGGCATAAGGTAAATTATGTCTCCAACTTTTCTTTATTATATGAAAAACTGCATTAGAATTTCTCTTGATTGGACTTATTGTATGGATGTCTGAAGAAACCCAGAGGAAATCCCATGGGCTGAGGCTGGAGCAGAGTACATCGTGGAGTCAACTGGAGTCTTCACTGATAAAGACAAGGCTGCTGCCCACTTGAAGGTTTGTGATCCTAAATAACTAGAGCGTTCTTATTTTGGCTTACTGTTTGTAGCTAATATTGATTTTTCAAAGTACATAGTTTGACACTCCAACATATAATCCCCCATGGCCTGAACACTTGGTGCCTGAAACCATGTAGCGAACTTTGTTTGCATTTTTTCTTTTGTACATGTTTATGTATGCATTTGTTAGTGAAGGTGCTATTCTGAGGCTTTACTCATGTACTTTTGTTTTCTTCTCCTGTCTAATCAAACTTCTGTGGAAACTTAAGGACAGAGTATGCTGTCATCTTGAAAGCAATTTAAAACTTCTCTATGTATTTTCTCGACAGGAGTCTAGGTGTTGCAGTACGCTGTTTGTATTGTCTCTATATTAGTTTTTTTTAAAATGTAAATTGATGCTAATGCGATGATGTTTGGGTGTTGACTACTTGGATTGATATGGTTATCACGTATTTCCTTGCACATTAGCTTGATTACCTGCATTGAATAGTTGGTGTTGAGTACCTGCTTAAATTTTTTTGGTTGTTGTTATTACCAGGGTGGTGCTAAGAAAGTAGTTATTTCTGCTCCTAGCAAGGATGCACCTATGTTTGTTGTTGGTGTCAATGAAAAGGAATACAAGCCAGACCTCAACATCGTTTCTAATGCTAGCTGTACTACTAACTGCCTTGCACCTCTGGCAAAGGTTCCCTTTTTTTTCTTTTGCCCTGTTCTTCATTTTAGTATTTGAGCCTATATGTGAATTTAAATGATTTCTTTTATGACTTTGCAGGTTATTCATGACAGGTTTGGAATCGTTGAGGGTCTTATGACTACAGTTCACTCCATAACTGGTAAGTATTGCTTTATGCATTAGAAGTTAATACAGCTTCTGTAGCTTGAGTACTAAGTAATTATTTTATAACAGCCACCCAGAAAACTGTTGATGGACCATCAGCTAAGGACTGGAGGGG</genome_strand>
        <mrna_strand>ATTTTCCTTCTCAGTTCACAAAAAAAAATCCTGG.................................................................................................................................GCAAGATTAAGATCGGAATCAATG.......................................................................................................................GTTTTGGAAGAATTGGCCGATTGGTGGCCAGGGTGGCTCTACAAAGAGATGATGTTGAGCTCGTTGCTGTTAACGATCCCTTCATCACCGTGGAATACATG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATACATGTTTAAGTATGACAGTGTTCACGGTCAATGGAAGAACAATGAGCTCAAGGTTAAGGATGAGAAGACTCTTCTCTTTGGTGAGAAGCCTGTTACTGTATTTGGC.......................................................................................................................................ATCGTGGAGTCAACTGGAGTCTTCACTGATAAAGACAAGGCTGCTGCCCACTTGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGGTGCTAAGAAAGTAGTTATTTCTGCTCCTAGCAAGGATGCACCTATGTTTGTTGTTGGTGTCAATGAAAAGGAATACAAGCCAGACCTCAACATCGTTTCTAATGCTAGCTGTACTACTAACTGCCTTGCACCTCTGGCAAAG.......................................................................................GTTATTCATGACAGGTTTGGAATCGTTGAGGGTCTTATGACTACAGTTCACTCCATAACTG..........................................................................CCACCCACAAAACTGTTGATGGACCATCACCTAAGGACTGGAGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0127C05-mUEoa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U315110" ref_strand="+" ref_description="SGN-U315110        Tomato 200607 #1 [47 ESTs aligned] arabidopsis/peptide: AT1G24360.1 | Symbol: None | 3-oxoacyl-(acyl-carrier protein) reductase, chloroplast / 3-ketoacyl-acyl carrier protein reductase, identical to 3-oxoacyl-(acyl-carrier protein) reductase SP:P33207 from (Arabidopsis thaliana) | chr1:8640725-8643467 FORWARD | Aliases: F21J9.2, F21J9.34, F21J9_34 (evalue: 8e-91, score=331) genbank/nr: gi|50923671|ref|XP_472196.1| OSJNBb0006N15.11 [Oryza sativa (japonica cultivar-group)] >gi|38346116|emb|CAE04594.2| OSJNBb0006N15.11 [Oryza sativa (japonica cultivar-group)] (evalue: 2e-101, score=372)">
      <seq>gaggctggcacattgttttcatcggaacttttacaataaatacgctctactctaactctgcaccctctactgatccatttacacacctggcaactttactccgttcaatggctactctcaccttcaattccgtcgccgccacctccaaaatccgatcctccgtcgccgccgcaaactcctccgtccgtcgccagctgtcacatgtccgccttccgtcttctcctattcagccatcatctgtcttgcagtgccgctggtcttcttccgcctcttcaggtgtgagagctcaggtgacaaccactgaacaagttggagttaaggctgctgcaaaagttgaagctccggttgttattgtcactggagcttctagaggaatagggaaggcaattgcgttggctttgggaaaggctggttgtaaggtccttgtgaactatgccagatcttcaaaggaggcagaagaagtttccaaagagattgaagcatgtggtggcgaagccttggcttttggaggcgacgtttcaaaagaagaagatgtagagtccatgatgaaaactgtggttgatcgatggggaacagttgatatcttgatcaataatgcaggtatcacgcgtgataccttgttgatgagaatgaagaagtctcagtggcaggaggttattgatttgaatcttacaggagtttttctctccacacaggctgcagctaaaatcatgatgaaaaagaaaaagggaagaatcatcaacatatcttctgttgttggtttagttggcaatgccgggcaagccaactatagtgctgctaaagcaggagtcattggcttaaccaagagtgttgcaaaagaatatgccagcaggaatattactgttaatgctattgcccctggatttattgcatcagatatgactgcccagctaagtgaagacattgaaaagaaacttttacaaagtattccgttaggacgctatggtcaacctgaagatgttgctggactagtggaattcctagcactcagtcccgcagccagctatattactggacaggttttgactatcgatggtgggatggtaatgtagaagtttaccccatagtttgctcatgaagaaagattggaagtgtgatcacttatattataccttgactgtagccttgcttcgtccaatatctgcgtaaaaggaacttgataatttggtggtagaagatgaccttactcatcatttttctgcattttcccctcttctttttccgttttcttagaagcatttttgaaccagggtttgatcattttgttgtggtttctatgttaaagctgagtaaacactatttgacgcacttcctttggtcaaagcatcctcatgtactgccatgaaagcttgctgctcttggcttaacctctgagaacgggagattgattaatcaatggcataatttagctcatgcttatttacagttgaagtaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0127C05-mUEoa/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06SLm0127C05.1" temp_strand="+" temp_description="C06SLm0127C05.1  AC226020.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0127C05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="33552" stop="39698"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33852" g_stop="34127" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="276" r_length="276" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34128" i_stop="34591" i_length="464">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34592" g_stop="34734" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="419" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34735" i_stop="35373" i_length="639">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35374" g_stop="35427" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="473" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="35428" i_stop="36213" i_length="786">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="36214" g_stop="36294" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="474" r_stop="554" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="36295" i_stop="36389" i_length="95">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="36390" g_stop="36435" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="555" r_stop="600" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="36436" i_stop="36708" i_length="273">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="36709" g_stop="36803" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="601" r_stop="695" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="36804" i_stop="36924" i_length="121">
            <donor d_prob="0.440" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="36925" g_stop="36957" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="696" r_stop="728" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="36958" i_stop="37925" i_length="968">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="37926" g_stop="38060" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="729" r_stop="863" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="38061" i_stop="38266" i_length="206">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="38267" g_stop="38360" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="864" r_stop="957" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="38361" i_stop="38795" i_length="435">
            <donor d_prob="0.753" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="38796" g_stop="38878" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="958" r_stop="1040" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="38879" i_stop="38982" i_length="104">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="38983" g_stop="39397" g_length="415"/>
          <reference_exon_boundary r_type="cDNA" r_start="1041" r_stop="1455" r_length="415" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1456" polyA_stop="1466"/>
      <MATCH_line gen_id="C06SLm0127C05.1" gen_strand="+" ref_id="SGN-U315110" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1455</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0127C05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U315110" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33852" e_stop="34127"/>
          <exon e_start="34592" e_stop="34734"/>
          <exon e_start="35374" e_stop="35427"/>
          <exon e_start="36214" e_stop="36294"/>
          <exon e_start="36390" e_stop="36435"/>
          <exon e_start="36709" e_stop="36803"/>
          <exon e_start="36925" e_stop="36957"/>
          <exon e_start="37926" e_stop="38060"/>
          <exon e_start="38267" e_stop="38360"/>
          <exon e_start="38796" e_stop="38878"/>
          <exon e_start="38983" e_stop="39397"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGCTGGCACATTGTTTTCATCGGAACTTTTACAATAAATACGCTCTACTCTAACTCTGCACCCTCTACTGATCCATTTACACACCTGGCAACTTTACTCCGTTCAATGGCTACTCTCACCTTCAATTCCGTCGCCGCCACCTCCAAAATCCGATCCTCCGTCGCCGCCGCAAACTCCTCCGTCCGTCGCCAGCTGTCACATGTCCGCCTTCCGTCTTCTCCTATTCAGCCATCATCTGTCTTGCAGTGCCGCTGGTCTTCTTCCGCCTCTTCAGGTATCTTTCAATTCGTAGTAGAGACGGATCTAATCCTTCTCTGCTTACTGCTTTCCAATTCTAAAAATGTTGTATGTATTATAGATACTTAGTGTTCATTGACTTTAAATCTTGAGTGCGATTCCTTTTTAGAAAAATGTATATTGACATTTTGCCTGATGAGAAATAAATACAATAGGACACTCGATTCTGGCCTCTGTTTATAGGAAAGGAATTCAAGAATATTTGAAAGCAAAAAGGAATCTGTAATTAGTTTAAAGGACAGATGCATTTCTCATCTGTTTTTTTTTTTTGGTAATAGCTAAAATGATACATAAGCCATGGTTGACTTTTTGAGTTCATAACACAACTTGTGATGAGCAGTTTTGCTGCTTTTAATACAATACCCTTTATCAATCAGAAAAAGATGTTCCTTTGTTTATAATTAGTTGTATAGATGTATAATGGGATTGTGATATGATCAGGTGTGAGAGCTCAGGTGACAACCACTGAACAAGTTGGAGTTAAGGCTGCTGCAAAAGTTGAAGCTCCGGTTGTTATTGTCACTGGAGCTTCTAGAGGAATAGGGAAGGCAATTGCGTTGGCTTTGGGAAAGGCTGGTTGTAAGGTCAGCATTGTGTTCCATTTTTTAAATACTAGAACTTATCTAATTTCACTCTTGCATTTGTATACTATGGTGTTGGCGACCTATGTGGCTTTACTGTAAAACATTATCAGCTCTAAGGTGCTATGGTAGTTGCTCAAGTTGTGTTTCCGTTGGCCATAGTTTAAAAGTGAAACAATGGGAAGTACTCTCTCTGTCCTTTGACTGCTCTGTTTATCATCTTAAGGTAAAATGTTTAATGGATAATTTTAATTGAGAATAAAAGGCTTTAATAGGATAGTTTCAAATGTGCGAAAAATAAATTAGTTACCTGAAAGGTGTCAGATGAAGTGTAAAACAATACTAGTTTGTGTTATTCTATATTGTTTTTGGGTGAAATTGCCGTTAACAAGCAGAAGCTTATACGGGCCAGAGTAGAAAGCGAAGCGGGTCCTCCTCCTCCTCCACATCTTCTTCTTATTTAGCTTAGTCTTTACTACGTGAAGTCAGGCATTTGAAAAATGTGAATTCCGTTGATTTAAGTTCTTCCGAAAGCTTCCAATAATGTTCTTGAGCTGACATAGGTTGATACACGGGCATTACTGTTCATCAATTTGTAATTTTCCCATACCTGCTTGATATAAAGTTCAATATCGGTGGCAGGTCCTTGTGAACTATGCCAGATCTTCAAAGGAGGCAGAAGAAGTTTCCAAAGAGGTATGTGTACCTTTTTTTAGTAATAATTTAGTTTAGTTTTTGGTATATATTAGTATCCCTGATACTTCCATTCCCAACTGAAAATATCATTTTAATTACTTGAAACATGAACTGTGTCTCGAACTTCAGTCTGGTAGCCTTTTTATTTTATTCTATTTTTATAGATAGAGCTAGGTCTTCCTCTCTGATTCAAAGAATTGGTCAAACATGGAAAACTGATTCTGCTCTCTCATCTTTGTTAGAATTTTTCTGATAAGATAGAAGCTAGTTAATGACCTGATTGCTTGTACTGAAACCGTAAAAGCAAAAGGAATTTATCTTTGCTGGTAATACTCTTCCATGGAAGATTGATGAAGTTGTCGATATATATATGATAATGGCTCGGTGAAGTTATACTGCATATATTTTATACTTGCGCATTTCAAACAATTATGTTTTCTCTTGGCTAATCCTCATCTATCAAGAAGTGTAAGTTTAGGTTCAAACTTTGTGTTTGGTTTCACTTATCTTCATGCAAGTTCCATCTCAAAACGTTGGCAAACATAGATTATTTTAGTTTTATCTCAGTCTTGTAAAGGAGCGAAACCTGCTTTTATCTCAGTCTTCCATCCATTGTTTGATTGCTGTTAGATTTGAAACTTCCGTTATTACTTCAACGAGCAGCTATCTATTCTTGGGTGTGGGAACTGGGAACAAGTCATACGGTCATGCTTAAGGCTGTCTCTCATGCTCCTTGAAAAAAGAAAAGATCTTTTCTGAGTGATTCAAGAATGTCATATTTTGTAGATTGAAGCATGTGGTGGCGAAGCCTTGGCTTTTGGAGGCGACGTTTCAAAAGAAGAAGATGTAGAGTCCATGATGAAAACTGTAAGCTCTCTCTTTTGTTAGTAATATTAATTAATGGTGGATCTTATCACAGTTGTTGCCAGCTGAATTGCACCTCATAAGTATAACATCTGCAGGTGGTTGATCGATGGGGAACAGTTGATATCTTGATCAATAATGCAGGTTAGCTACCACCTTTATTTTGTTGCGACAAGTCAAAAAGATCATTTAATCAATTTTGCACCAAGATAATACCAACAAGTTAACACATTTGTGCTGTGACATTAAGCATCCAACAAAAATCTGTGCAACTTTCTAGTTAGAGAGGAACATGTTTTTACCCCATATATACAAGTGAAACAATATTTTTTTTATGCAGGCTAGCAAAAGTCATCCCGTTTTGCATCAAGTTTTATTAGAATTCCCTATCAGTAGTTCTCTTTTTCTTCTTTTCAGGTATCACGCGTGATACCTTGTTGATGAGAATGAAGAAGTCTCAGTGGCAGGAGGTTATTGATTTGAATCTTACAGGAGTTTTTCTCTCCACACAGGTCTATACGCTAGCTGTGTTTCAATTGGTAGTTTGGTTGTCTCCCCCAATCCCTCCTCCCAAAACCTGTATGTATTTTTCTTAAATAAGGTTCTTATAAGGGATCTTTCTTCTTGTTGCAGGCTGCAGCTAAAATCATGATGAAAAAGAAAAAGGTAAATTTGTCCATCTACCTCTTGATCTTCAGAAATAATATTATTTGTCTGGTAAGGTTCAAGTGTTCCGAAACTGTTGCATAGAGAGAAGTGCATTTGTCTCTATGGACTCTACAGCAGTTATAAACAATGACTACACCACATGGTGGGTCATTGAGGTCGTCCACACTAGCCCTTTCCAAAATTTTATGTATGGAAGAAATATCACTAGAACAACCATGTGGGGCAGGGGTCATCCCTAGCTTTGGGTAGAATAACCAAATTGTATTTTCCATTCCTGGTTTCTTGGACTCGCATGCTAGTCAAAGTAAAACAAAAAAGGAATTGAAAACACAATGACCGGTTGGCTATGTGTGACACTTGCACTACATTGATTAAACAGGGCATGGGCAAAATACTTCTCTTATCTGGATTGAAAGAAAATGGACAGAAATACATTAGTTGAAGGGAGATAGCTTATAACTTTATTCCCACCTAGTGTTAAAAGATAACATAATGCTACAATAAGATTGTCAGGTCAATTAGTTTTCTCTCTTGTTTGAAGCATCAAAAGTTGAGTTGATTTCAGCTTCAGAATTTGGATTTGTCGTGTTTGAAATCGGTTATGATGGAAGGGTTTTGATGTGACGCAGAAGCTGTTTCCAGCTATTCCGTTCCATGGATTTCAGTTGATGGTGTCATTTACTCAGATTCTGTCACCTGCTATATTGCTGACAGTTACCTTTTCAATGAATATGAACTAGTTATTCTTACAAAACAAGAAACAAATTTACTGATCCTTGAGTATGTTAAAATAGCCAGGTTGTGCCAGATGCCAACTAATAAGACTGTTCCCATCATGTTTATCTAGCGATATATTCTGATCCTTGAAAAAAAATTGATCACTAAGATGAAAGCAATGCAATGGAGTTTTATACTGTTCCTTATATACTTCAGAATTTTATTTAGGCATGGTCTACACTTTTCAGGGAAGAATCATCAACATATCTTCTGTTGTTGGTTTAGTTGGCAATGCCGGGCAAGCCAACTATAGTGCTGCTAAAGCAGGAGTCATTGGCTTAACCAAGAGTGTTGCAAAAGAATATGCCAGCAGGAATATTACTGTAAGTGCTCCTAGTCATTCCGTTGTATCACTTGGCTTGTTTACGTTAATGCTAGCTACGAAGGATTTGGTAAAGCATATTATCAAGGAACTTTTTCTGATGAGGACAAACTAATGAGTTGTCTCTCTTATTTTTCCCATTGGTGATATAATGACTTCTTATGGCTCATAATTAGGTTATTTATGCTGAATTTTACTTTTCTGCAGGTTAATGCTATTGCCCCTGGATTTATTGCATCAGATATGACTGCCCAGCTAAGTGAAGACATTGAAAAGAAACTTTTACAAAGTATTCCGTTAGGTAAGAGCAGATGTCTTTTAAAGTTTTTGTGGCGTTTATATCTCAACATAGTGACGAGTTCCCTGCACCTCTAAGACGAGGAAAAGGTACTCCAAGTAGCATAAGACAACATCAGATGCAATTGTCAAATTTCATTTGTATCAATAGAAAACTCTGACTCTATAAAACGAATAAAACTAAGTTGGAACTGAAAAACATCAACTGAGCTTGAAACTTGATAGTAGGTAGTTTCCCCTTCTTCAATGCATCCAACATTTCAAAGACTTTGTACTTGCTATGTATAAAAGATTTCATTTATTAAACTAGTAAAAGTAAGTACTATTCAATTTAATTTTTTAGGAAATATGGTTCATATCTATATTTTTCAGATTAAAGCACAAAAGAGTTCTGGTAAAGAATAACTATATTGACTCACTTTGGTTTCACATAACACAGGACGCTATGGTCAACCTGAAGATGTTGCTGGACTAGTGGAATTCCTAGCACTCAGTCCCGCAGCCAGCTATATTACTGGACAGGTAACTTCCATCTTATGCGGCCTCATCTGTCATTTATCCAAAGCTTCTCTCTTGCTACGTCATGTTAAAACATCTTTTATTAAGAATATCTATTTCCTTTACAGGTTTTGACTATCGATGGTGGGATGGTAATGTAGAAGTTTACCCCATAGTTTGCTCATGAAGAAAGATTGGAAGTGTGATCACTTATATTATACCTTGACTGTAGCCTTGCTTCGTCCAATATCTGCGTAAAAGGAACTTGATAATTTGGTGGTAGAAGATGACCTTACTCATCATTTTTCTGCATTTTCCCCTCTTCTTTTTCCGTTTTCTTAGAAGCATTTTTGAACCAGGGTTTGATCATTTTGTTGTGGTTTCTATGTTAAAGCTGAGTAAACACTATTTGACGCACTTCCTTTGGTCAAAGCATCCTCATGTACTGCCATGAAAGCTTGCTGCTCTTGGCTTAACCTCTGAGAACGGGAGATTGATTAATCAATGGCATAATTTAGCTCATGCTTATTTACAGTTGAAGTA</genome_strand>
        <mrna_strand>GAGGCTGGCACATTGTTTTCATCGGAACTTTTACAATAAATACGCTCTACTCTAACTCTGCACCCTCTACTGATCCATTTACACACCTGGCAACTTTACTCCGTTCAATGGCTACTCTCACCTTCAATTCCGTCGCCGCCACCTCCAAAATCCGATCCTCCGTCGCCGCCGCAAACTCCTCCGTCCGTCGCCAGCTGTCACATGTCCGCCTTCCGTCTTCTCCTATTCAGCCATCATCTGTCTTGCAGTGCCGCTGGTCTTCTTCCGCCTCTTCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGAGAGCTCAGGTGACAACCACTGAACAAGTTGGAGTTAAGGCTGCTGCAAAAGTTGAAGCTCCGGTTGTTATTGTCACTGGAGCTTCTAGAGGAATAGGGAAGGCAATTGCGTTGGCTTTGGGAAAGGCTGGTTGTAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCTTGTGAACTATGCCAGATCTTCAAAGGAGGCAGAAGAAGTTTCCAAAGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGAAGCATGTGGTGGCGAAGCCTTGGCTTTTGGAGGCGACGTTTCAAAAGAAGAAGATGTAGAGTCCATGATGAAAACT...............................................................................................GTGGTTGATCGATGGGGAACAGTTGATATCTTGATCAATAATGCAG.................................................................................................................................................................................................................................................................................GTATCACGCGTGATACCTTGTTGATGAGAATGAAGAAGTCTCAGTGGCAGGAGGTTATTGATTTGAATCTTACAGGAGTTTTTCTCTCCACACAG.........................................................................................................................GCTGCAGCTAAAATCATGATGAAAAAGAAAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAGAATCATCAACATATCTTCTGTTGTTGGTTTAGTTGGCAATGCCGGGCAAGCCAACTATAGTGCTGCTAAAGCAGGAGTCATTGGCTTAACCAAGAGTGTTGCAAAAGAATATGCCAGCAGGAATATTACT..............................................................................................................................................................................................................GTTAATGCTATTGCCCCTGGATTTATTGCATCAGATATGACTGCCCAGCTAAGTGAAGACATTGAAAAGAAACTTTTACAAAGTATTCCGTTAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGCTATGGTCAACCTGAAGATGTTGCTGGACTAGTGGAATTCCTAGCACTCAGTCCCGCAGCCAGCTATATTACTGGACAG........................................................................................................GTTTTGACTATCGATGGTGGGATGGTAATGTAGAAGTTTACCCCATAGTTTGCTCATGAAGAAAGATTGGAAGTGTGATCACTTATATTATACCTTGACTGTAGCCTTGCTTCGTCCAATATCTGCGTAAAAGGAACTTGATAATTTGGTGGTAGAAGATGACCTTACTCATCATTTTTCTGCATTTTCCCCTCTTCTTTTTCCGTTTTCTTAGAAGCATTTTTGAACCAGGGTTTGATCATTTTGTTGTGGTTTCTATGTTAAAGCTGAGTAAACACTATTTGACGCACTTCCTTTGGTCAAAGCATCCTCATGTACTGCCATGAAAGCTTGCTGCTCTTGGCTTAACCTCTGAGAACGGGAGATTGATTAATCAATGGCATAATTTAGCTCATGCTTATTTACAGTTGAAGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0127C05-mUEoa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U325386" ref_strand="+" ref_description="SGN-U325386        Tomato 200607 #1 [5 ESTs aligned] arabidopsis/peptide: | Symbol: None | pentatricopeptide (PPR) repeat-containing protein, low similarity to DNA-binding protein (Triticum aestivum) GI:6958202; contains Pfam profile PF01535: PPR repeat | chr1:2336520-2339388 REVERSE | Aliases: F22G5.3, F22G5_3(evalue: 3e-08, score=56.2) genbank/nr: gi|15222438|ref|NP_172238.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] gi|15809864|gb|AAL06860.1| At1g07590/F22G5_2 [Arabidopsis thaliana](evalue: 2e-06, score=56.2)">
      <seq>cctccacttctgtagaccttctccatatctttcctctgtgatttcagcggccaactttcctgctacgaccatcactgtcagctattgcccctgggaaccatcaagaaagaagctatttttagcagggggttctcactttatggttaaaatcaaatgccaatgtgattgaaacgtaatgtttgaagtgggatgggatctagcaacttcacctccttgaaatttaataatccttttttttgttcgttaatcaagctgtggcaggttaactcttatggtttccgtggactagtgatgctgaatatataatttcagggcaattctttccttaagcagtcctgatgagtaaagttggttttgtttctgatatcaacaatgaacttcatatccattctgtggaaacagaggatcactagtgcaattcatcaaacaattgttatatctttgtccaaacaaactattcattcatgtcaagtttattgtttgaaaacatcggatgcaaattttacttcagagaagtcagaatcagaaaaggaagaaaggttggtagatcagggaatggtgacaacaaggaacagcttaagtcaaagaattgaaagtgtacccataggagagtccattggatccactttccaaagctggatgggtgatggtttacctattcatagaggtgacattttccacactatgaatcgtttgcgcaaactcaaattgaacaagcgtgctcttgaggttcttttactctgtcctttcttgccaaatttgaaaatgggcatttacctattatgaagtacatgaagtattcaacctactgtgaacaccactagggtgcactttacatgtttacataagatatctaagggtagtagtagtgaatgtagtactactactagtgttatgtttcaggtaaagctggtacagagtgttatgttccatattagttattcaggcattttcaatatacgaatttcctctattccttctcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0127C05-mUEoa/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06SLm0127C05.1" temp_strand="+" temp_description="C06SLm0127C05.1  AC226020.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0127C05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="40147" stop="42415"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40447" g_stop="40502" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40503" i_stop="41179" i_length="677">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41180" g_stop="42115" g_length="936"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="992" r_length="936" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0127C05.1" gen_strand="+" ref_id="SGN-U325386" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>992</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0127C05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U325386" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40447" e_stop="40502"/>
          <exon e_start="41180" e_stop="42115"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCCACTTCTGTAGACCTTCTCCATATCTTTCCTCTGTGATTTCAGCGGCCAACTGTAAGTTTTTCTTGTGATTTTAGTGGCATAACTTCTCAGCTGCTCTACGTTTCTAAATACTTTTTCAATTTTCTGTGCAATTTCATAAAAAAAGACGAGATTTTAGTTAGCTACTGGATTTATACTTCATTGGTGTTGTGAAAATTTCCTGTTGCTGCAACTTTTTTTTTTCTTTTTCAAATTTGAATTATGAGATTTTAAATGGTTCCTTTTTGTACTTTAATTCATGAGAAGAAGAAAAATGTGCAGTTGATTGTGTCAGTGATGTACATATTAGGATAAAATGATCCAATATGTGTTAGTATGCTATGTCACTTTGATGAGAAAGCATGAAGGAGAACTGAAATACAATTGAGAGTCAAAGTTTTTTTTGTGTTTTTTTAATACATAGACATAGCAGTAGTTAGAAAAGAACTTATATTAGGCAGAACGAATCCTGCAACTGGCTTTTAACTTTCATTAGCTCAGTAGAGTGTGTTTGTGTTTCTATCTCCTAGGAACTCCAAATCTTGATAGGTGAATGTGATCGATATTGATGAAGCTCAGTTCTTTGATAACCTTAATGTTTTTTTCTGCAATGCTGCTGATCTTGATGGAAAGAATGTAATTATTACAGGGTTAGATGGTGATTACTTGAGGTATTCCTCGAATAACTCATTTTCCTTTCAATGTTTCAGTTCCTGCTACGACCATCACTGTCAGCTATTGCCCCTGGGAACCATCAAGAAAGAAGCTATTTTTAGCAGGGGGTTCTCACTTTATGGTTAAAATCAAATGCCAATGTGATTGAAACGTAATGTTTGAAGTGGGATGGGATCTAGCAACTTCACCTCCTTGAAATTTAATAATCCTTTTTTTTGTTCGTTAATCAAGCTGTGGCAGGTTAACTCTTATGGTTTCCGTGGACTAGTGATGCTGAATATATAATTTCAGGGCAATTCTTTCCTTAAGCAGTCCTGATGAGTAAAGTTGGTTTTGTTTCTGATATCAACAATGAACTTCATATCCATTCTGTGGAAACAGAGGATCACTAGTGCAATTCATCAAACAATTGTTATATCTTTGTCCAAACAAACTATTCATTCATGTCAAGTTTATTGTTTGAAAACATCGGATGCAAATTTTACTTCAGAGAAGTCAGAATCAGAAAAGGAAGAAAGGTTGGTAGATCAGGGAATGGTGACAACAAGGAACAGCTTAAGTCAAAGAATTGAAAGTGTACCCATAGGAGAGTCCATTGGATCCACTTTCCAAAGCTGGATGGGTGATGGTTTACCTATTCATAGAGGTGACATTTTCCACACTATGAATCGTTTGCGCAAACTCAAATTGAACAAGCGTGCTCTTGAGGTTCTTTTACTCTGTCCTTTCTTGCCAAATTTGAAAATGGGCATTTACCTATTATGAAGTACATGAAGTATTCAACCTACTGTGAACACCACTAGGGTGCACTTTACATGTTTACATAAGATATCTAAGGGTAGTAGTAGTGAATGTAGTACTACTACTAGTGTTATGTTTCAGGTAAAGCTGGTACAGAGTGTTATGTTCCATATTAGTTATTCAGGCATTTTCAATATACGAATTTCCTCTATTCCTTCTCAAAAAATATA</genome_strand>
        <mrna_strand>CCTCCACTTCTGTAGACCTTCTCCATATCTTTCCTCTGTGATTTCAGCGGCCAACT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCTGCTACGACCATCACTGTCAGCTATTGCCCCTGGGAACCATCAAGAAAGAAGCTATTTTTAGCAGGGGGTTCTCACTTTATGGTTAAAATCAAATGCCAATGTGATTGAAACGTAATGTTTGAAGTGGGATGGGATCTAGCAACTTCACCTCCTTGAAATTTAATAATCCTTTTTTTTGTTCGTTAATCAAGCTGTGGCAGGTTAACTCTTATGGTTTCCGTGGACTAGTGATGCTGAATATATAATTTCAGGGCAATTCTTTCCTTAAGCAGTCCTGATGAGTAAAGTTGGTTTTGTTTCTGATATCAACAATGAACTTCATATCCATTCTGTGGAAACAGAGGATCACTAGTGCAATTCATCAAACAATTGTTATATCTTTGTCCAAACAAACTATTCATTCATGTCAAGTTTATTGTTTGAAAACATCGGATGCAAATTTTACTTCAGAGAAGTCAGAATCAGAAAAGGAAGAAAGGTTGGTAGATCAGGGAATGGTGACAACAAGGAACAGCTTAAGTCAAAGAATTGAAAGTGTACCCATAGGAGAGTCCATTGGATCCACTTTCCAAAGCTGGATGGGTGATGGTTTACCTATTCATAGAGGTGACATTTTCCACACTATGAATCGTTTGCGCAAACTCAAATTGAACAAGCGTGCTCTTGAGGTTCTTTTACTCTGTCCTTTCTTGCCAAATTTGAAAATGGGCATTTACCTATTATGAAGTACATGAAGTATTCAACCTACTGTGAACACCACTAGGGTGCACTTTACATGTTTACATAAGATATCTAAGGGTAGTAGTAGTGAATGTAGTACTACTACTAGTGTTATGTTTCAGGTAAAGCTGGTACAGAGTGTTATGTTCCATATTAGTTATTCAGGCATTTTCAATATACGAATTTCCTCTATTCCTTCTCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0127C05-mUEoa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U330029" ref_strand="-" ref_description="SGN-U330029        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein, contains Pfam domain, PF03650: Uncharacterized protein family (UPF0041) | chr5:6787004-6788656 REVERSE | Aliases: F28I16.240, F28I16_240(evalue: 3e-18, score=88.6) genbank/nr: gi|15241266|ref|NP_197509.1| expressed protein [Arabidopsis thaliana] gi|15293009|gb|AAK93615.1| unknown protein [Arabidopsis thaliana] gi|19310837|gb|AAL85149.1| unknown protein [Arabidopsis thaliana] gi|21553883|gb|AAM62976.1| unknown [Arabidopsis thaliana](evalue: 2e-16, score=88.6)">
      <seq>ataaattttccattcgttcacgtaactaaaccactttcataatgagccctagctgctgctactattaatggcacaattccttttctggaaaaacaacaaagtatccacatttatttcaacacttctcataaaagagaaattgaaattttaattttgcatttccccaatttcatcaacaatcgcagaagcttttttctgcgcagtattcgagaggcaattgaattacaaaatcatgagttacttccgggcattcttgaacagtcctgttggccctaaaacaactcacttttggggtcctatggccaactggggctttgtcatttctggagtgatggattcacagaagccccctgatgcaatatctggcaatatgacttcaggtgaaatagtagtagtctttacatttttagtccaagctactcgaacaatagtcaatgtatccttcttttgaatgcaaaagaatctcgcagaaacaatggtggatccagtataagctgttagtctggccaaaaactctgctttggactcgaacctcatgtatatacgtggaaaaaaagaaggaagaatgtctcttgtacaaacaatgggtggatccaatataagctatgggtttggccaaacctatggctttagactagagccttatgtaaatatgtggaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0127C05-mUEoa/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06SLm0127C05.1" temp_strand="+" temp_description="C06SLm0127C05.1  AC226020.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0127C05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="45892" stop="48067"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46192" g_stop="46402" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="211" r_length="211" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46403" i_stop="47215" i_length="813">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47216" g_stop="47329" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="325" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47330" i_stop="47430" i_length="101">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47431" g_stop="47767" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="664" r_length="339" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0127C05.1" gen_strand="+" ref_id="SGN-U330029" ref_strand="-">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>662</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0127C05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U330029" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="46192" e_stop="46402"/>
          <exon e_start="47216" e_stop="47329"/>
          <exon e_start="47431" e_stop="47767"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAAATTTTCCATTCGTTCACGTAACTAAACCACTTTCATAATGAGCCCTAGCTGCTGCTACTATTAATGGCACAATTCCTTTTCTGGAAAAACAACAAAGTATCCACATTTATTTCAACACTTCTCATAAAAGAGAAATTGAAATTTTAATTTTGCATTTCCCCAATTTCATCAACAATCGCAGAAGCTTTTTTCTGCGCAGTATTCGAGGTAAGGTCCTGTTGTAACATTAGTAGCTATAGACTGGTTTTTGTTCCTTTCTGATGATATCATTGATGTTCGGGTATCCATTAATTTCTCGAGATACTTATCGGTTGCTAAACATCAGATAGCTTTGTTAATCAAAACTAGAATAGATGTATTGTTTTTACCAGAATTTGAACTTGAAATATTAAAACATCAGGTAGGTAGCTTTGTTAATCAAAACTAGAACAGATGTATTGTTATGACAGATGAAAAGATTTTTTTTTCCGCTAGAATTTGAACCTGAAACGTTAGGACAGATGAAAAGAAATCACCTATTACTTTTGTTTATATGGGAATTTGAACTGTGAAAAGTTAGGATAGATGATAAGAAATCACCTATTATTTTTGTTTATGCAGGAATTTGAACCTGAAACGTTAGGGTTCTCAACCCACTTTACTAACCACTAGGTCACGTCCTTTGATTGGGGTGTGAGCATTGGAGTTGATAGAGGAAGATGTAGGTAAAAAGGAATAAAGATCGTGATAATTTGATTCTTTATTGTTGTAATGAATGGAAGAGAAAATGGAAATTTGATTTGTTGTTTTTACTTTGAGGTATCTCAAGAGAACTATAGGAAAAAGGTTTGTTTATTAAGTGAAAAGATTCAATTTTTTCACATGGAAGGAAATAAATCTTATTTTATTGGAAATGAGCAAGTTCCCTGTTTGTTTATCAGTAAATTGGAAAATGATTAGGAATTTAGGATTGATTTTAAATGTGATTTATAAATTAATATAGTTTGTGTTAGTGTTTGAAGTTTGCTTCAATTTATGCAGAGGCAATTGAATTACAAAATCATGAGTTACTTCCGGGCATTCTTGAACAGTCCTGTTGGCCCTAAAACAACTCACTTTTGGGGTCCTATGGCCAACTGGGGCTTTGTCATTTCTGTATGTTCCTAACCTTTGATGTTCGTTTTCGGTAAATTATTTCTGTTTTTTTATCTAATACTGAAGTCTCTGAAATTTACTTGAATTGATTAATTTGCAAGGGAGTGATGGATTCACAGAAGCCCCCTGATGCAATATCTGGCAATATGACTTCAGGTGAAATAGTAGTAGTCTTTACATTTTTAGTCCAAGCTACTCGAACAATAGTCAATGTATCCTTCTTTTGAATGCAAAAGAATCTCGCAGAAACAATGGTGGATCCAGTATAAGCTGTTAGTCTGGCCAAAAACTCTGCTTTGGACTCGAACCTCATGTATATACGTGGAAAAAAAGAAGGAAGAATGTCTCTTGTACAAACAAT-GGTGGATCCAATATAAGCTAT-GGTTTGGCCAAACCTATGGCTTTAGACTAGAGCCTTATGTAAATATGTGGAAAAAA</genome_strand>
        <mrna_strand>ATAAATTTTCCATTCGTTCACGTAACTAAACCACTTTCATAATGAGCCCTAGCTGCTGCTACTATTAATGGCACAATTCCTTTTCTGGAAAAACAACAAAGTATCCACATTTATTTCAACACTTCTCATAAAAGAGAAATTGAAATTTTAATTTTGCATTTCCCCAATTTCATCAACAATCGCAGAAGCTTTTTTCTGCGCAGTATTCGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCAATTGAATTACAAAATCATGAGTTACTTCCGGGCATTCTTGAACAGTCCTGTTGGCCCTAAAACAACTCACTTTTGGGGTCCTATGGCCAACTGGGGCTTTGTCATTTCT.....................................................................................................GGAGTGATGGATTCACAGAAGCCCCCTGATGCAATATCTGGCAATATGACTTCAGGTGAAATAGTAGTAGTCTTTACATTTTTAGTCCAAGCTACTCGAACAATAGTCAATGTATCCTTCTTTTGAATGCAAAAGAATCTCGCAGAAACAATGGTGGATCCAGTATAAGCTGTTAGTCTGGCCAAAAACTCTGCTTTGGACTCGAACCTCATGTATATACGTGGAAAAAAAGAAGGAAGAATGTCTCTTGTACAAACAATGGGTGGATCCAATATAAGCTATGGGTTTGGCCAAACCTATGGCTTTAGACTAGAGCCTTATGTAAATATGTGGAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0127C05-mUEoa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U339430" ref_strand="+" ref_description="SGN-U339430        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein, contains Pfam domain, PF03650: Uncharacterized protein family (UPF0041) | chr5:6787004-6788656 REVERSE | Aliases: F28I16.240, F28I16_240(evalue: 3e-41, score=165) genbank/nr: gi|15241266|ref|NP_197509.1| expressed protein [Arabidopsis thaliana] gi|15293009|gb|AAK93615.1| unknown protein [Arabidopsis thaliana] gi|19310837|gb|AAL85149.1| unknown protein [Arabidopsis thaliana] gi|21553883|gb|AAM62976.1| unknown [Arabidopsis thaliana](evalue: 2e-39, score=165)">
      <seq>tttcaacacttctcataaaagagaaattgaaattttaattttgcatttccccaatttcatcaacaatcgcagaagcttttttctgcgcagtattcgaggaatttgaacctgaaacgttagggttctcaacccactttactaaccactaggtcacgtcctttgattggggtgtgagcattggagttgatagaggaagataggcaattgaattacaaaatcatgagttacttccgggcattcttgaacagtcctgttggccctaaaacaactcacttttggggtcctatgggcaactggagctttgtcatttctggagtgatggattcacagaagccccctgatgcaatatctggcaatatgacttcagtgctatgtgtatattcactattatgtatgagatttgcatggatggtacgccctcgcaattatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0127C05-mUEoa/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06SLm0127C05.1" temp_strand="+" temp_description="C06SLm0127C05.1  AC226020.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0127C05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="46005" stop="48344"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46305" g_stop="46402" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="98" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46403" i_stop="46795" i_length="393">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46796" g_stop="46895" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="198" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46896" i_stop="47215" i_length="320">
            <donor d_prob="0.792" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47216" g_stop="47329" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="312" r_length="114" r_score="0.982"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47330" i_stop="47430" i_length="101">
            <donor d_prob="0.966" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="47431" g_stop="47485" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="367" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="47486" i_stop="47981" i_length="496">
            <donor d_prob="0.895" d_score="1.00"/>
            <acceptor a_prob="0.910" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="47982" g_stop="48044" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="430" r_length="63" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0127C05.1" gen_strand="+" ref_id="SGN-U339430" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>430</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0127C05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U339430" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46305" e_stop="46402"/>
          <exon e_start="46796" e_stop="46895"/>
          <exon e_start="47216" e_stop="47329"/>
          <exon e_start="47431" e_stop="47485"/>
          <exon e_start="47982" e_stop="48044"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCAACACTTCTCATAAAAGAGAAATTGAAATTTTAATTTTGCATTTCCCCAATTTCATCAACAATCGCAGAAGCTTTTTTCTGCGCAGTATTCGAGGTAAGGTCCTGTTGTAACATTAGTAGCTATAGACTGGTTTTTGTTCCTTTCTGATGATATCATTGATGTTCGGGTATCCATTAATTTCTCGAGATACTTATCGGTTGCTAAACATCAGATAGCTTTGTTAATCAAAACTAGAATAGATGTATTGTTTTTACCAGAATTTGAACTTGAAATATTAAAACATCAGGTAGGTAGCTTTGTTAATCAAAACTAGAACAGATGTATTGTTATGACAGATGAAAAGATTTTTTTTTCCGCTAGAATTTGAACCTGAAACGTTAGGACAGATGAAAAGAAATCACCTATTACTTTTGTTTATATGGGAATTTGAACTGTGAAAAGTTAGGATAGATGATAAGAAATCACCTATTATTTTTGTTTATGCAGGAATTTGAACCTGAAACGTTAGGGTTCTCAACCCACTTTACTAACCACTAGGTCACGTCCTTTGATTGGGGTGTGAGCATTGGAGTTGATAGAGGAAGATGTAGGTAAAAAGGAATAAAGATCGTGATAATTTGATTCTTTATTGTTGTAATGAATGGAAGAGAAAATGGAAATTTGATTTGTTGTTTTTACTTTGAGGTATCTCAAGAGAACTATAGGAAAAAGGTTTGTTTATTAAGTGAAAAGATTCAATTTTTTCACATGGAAGGAAATAAATCTTATTTTATTGGAAATGAGCAAGTTCCCTGTTTGTTTATCAGTAAATTGGAAAATGATTAGGAATTTAGGATTGATTTTAAATGTGATTTATAAATTAATATAGTTTGTGTTAGTGTTTGAAGTTTGCTTCAATTTATGCAGAGGCAATTGAATTACAAAATCATGAGTTACTTCCGGGCATTCTTGAACAGTCCTGTTGGCCCTAAAACAACTCACTTTTGGGGTCCTATGGCCAACTGGGGCTTTGTCATTTCTGTATGTTCCTAACCTTTGATGTTCGTTTTCGGTAAATTATTTCTGTTTTTTTATCTAATACTGAAGTCTCTGAAATTTACTTGAATTGATTAATTTGCAAGGGAGTGATGGATTCACAGAAGCCCCCTGATGCAATATCTGGCAATATGACTTCAGGTGAAATAGTAGTAGTCTTTACATTTTTAGTCCAAGCTACTCGAACAATAGTCAATGTATCCTTCTTTTGAATGCAAAAGAATCTCGCAGAAACAATGGTGGATCCAGTATAAGCTGTTAGTCTGGCCAAAAACTCTGCTTTGGACTCGAACCTCATGTATATACGTGGAAAAAAAGAAGGAAGAATGTCTCTTGTACAAACAATGGTGGATCCAATATAAGCTATGGTTTGGCCAAACCTATGGCTTTAGACTAGAGCCTTATGTAAATATGTGGAAAAAAAGTATACATAGGATTGAATTTATATTTCAGAACCTGCATTTTTAACTTCGCTAGAACTTTCAGAGTTTAAATTTTGGATCTGTCACTGCTCAAAACATAAGTTTTTGGTACATCAACGCGTTCTGGTGTGCTTTACTTTTGATCCTGCATAAAATGATTGTCTCAGTTTTAGACCATTTATTGAATTTTCTTGCTTTTGTTTCTTTGGCTGCAGTGCTATGTGTATATTCACTATTATGTATGAGATTTGCATGGATGGTACGTCCTCGCAATTATC</genome_strand>
        <mrna_strand>TTTCAACACTTCTCATAAAAGAGAAATTGAAATTTTAATTTTGCATTTCCCCAATTTCATCAACAATCGCAGAAGCTTTTTTCTGCGCAGTATTCGAG.........................................................................................................................................................................................................................................................................................................................................................................................................GAATTTGAACCTGAAACGTTAGGGTTCTCAACCCACTTTACTAACCACTAGGTCACGTCCTTTGATTGGGGTGTGAGCATTGGAGTTGATAGAGGAAGAT................................................................................................................................................................................................................................................................................................................................AGGCAATTGAATTACAAAATCATGAGTTACTTCCGGGCATTCTTGAACAGTCCTGTTGGCCCTAAAACAACTCACTTTTGGGGTCCTATGGGCAACTGGAGCTTTGTCATTTCT.....................................................................................................GGAGTGATGGATTCACAGAAGCCCCCTGATGCAATATCTGGCAATATGACTTCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTATGTGTATATTCACTATTATGTATGAGATTTGCATGGATGGTACGCCCTCGCAATTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0127C05-mUEoa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U314102" ref_strand="+" ref_description="SGN-U314102        Tomato 200607 #1 [30 ESTs aligned] arabidopsis/peptide: | Symbol: None | 60S ribosomal protein L17 (RPL17A), similar to GB:P51413 from (Arabidopsis thaliana); similar to ESTs gb:L33542 and gb:AA660016 | chr1:9515122-9516912 FORWARD | Aliases: F17L21.19, F17L21_19(evalue: 4e-77, score=284) genbank/nr: gi|15824574|gb|AAL09401.1| ribosomal protein [Petunia x hybrida](evalue: 2e-82, score=308)">
      <seq>ggccaaatcggccgaattccatggggatccgataagcagacaccttctatcagcagctgcaggggaacagcagcatcaccggcagccatggtgaagtattcgaatgaaccagagaacccaaccaaatcttgcaaagctaggggttcgtatctcagagctcattttaagaatactagagaaacagcgcatgcccttaggaagatgcctttgaacaaggcaaagagctatttggaggatgttcttgcccacaaacaagccatccccttcacccgcttttgtcgtggggttggtcgcactgctcaggcgaagaatcgccactcaaatggacaaggacgttggcctgtcaaatctgcaaagtttatcctcgatttgctaaaaaatgctgagagtaatgctgaagttaaaggcttggatgtggattcactttacattactcacatccaagtaaaccaagcacagaaacagaggcgccgtacataccgtgctcatggaagaatcaatccttatatgtcacatccttgccatatcgagctggtattgtctgagaaggaagaatctgttaagaaagagcctgaaactcagttagcccccaggaagacaaaggcatcttcctgagcagagaaaggaatcccgaaattttggaagtataatttcaatattcctttagcctttgtatcggaagaatttagtgctatttcaaacatttcttcatagaatttagtgttttttgtgtaattttactatttcggagcttaaattggcttgtgctttttgagcatgtgtatgagggaattttggatttctatggtcttgctttttctaagaatgaattgggatgttagtagtaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0127C05-mUEoa/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06SLm0127C05.1" temp_strand="+" temp_description="C06SLm0127C05.1  AC226020.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0127C05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="51706" stop="54363"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52012" g_stop="52062" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="90" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52063" i_stop="52132" i_length="70">
            <donor d_prob="0.182" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52133" g_stop="52169" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="127" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52170" i_stop="52270" i_length="101">
            <donor d_prob="0.940" d_score="0.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52271" g_stop="52311" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="168" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52312" i_stop="53012" i_length="701">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53013" g_stop="53243" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="399" r_length="231" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="53244" i_stop="53339" i_length="96">
            <donor d_prob="0.948" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="53340" g_stop="53442" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="502" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="53443" i_stop="53529" i_length="87">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="53530" g_stop="53597" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="503" r_stop="570" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="53598" i_stop="53786" i_length="189">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="53787" g_stop="54062" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="571" r_stop="846" r_length="276" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="847" polyA_stop="863"/>
      <MATCH_line gen_id="C06SLm0127C05.1" gen_strand="+" ref_id="SGN-U314102" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>807</cumulative_length_of_scored_exons>
        <coverage percentage="0.935" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0127C05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U314102" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52012" e_stop="52062"/>
          <exon e_start="52133" e_stop="52169"/>
          <exon e_start="52271" e_stop="52311"/>
          <exon e_start="53013" e_stop="53243"/>
          <exon e_start="53340" e_stop="53442"/>
          <exon e_start="53530" e_stop="53597"/>
          <exon e_start="53787" e_stop="54062"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACCTTCTATCAGCAGCTGCAGGGGAACAGCAGCATCACCGGCAGCCATGGTTAGTTAGAGTGTTAAACCGTCGGATTCTCCGATTGAGTTCTGTGTTAATCCTTTTTGTTTTTATGTAGGTGAAGTATTCGAATGAACCAGAGAACCCAACCAAATGTGAGTACTCAATACGATACATACATTTTCTGTTACAAGCATTATTTAAGAGTGTTTATATTCGTTGGTTTTTATTTAACTGTTTAATGCTCTTGTATCAGCTTGCAAAGCTAGGGGTTCGTATCTCAGAGCTCATTTTAAGGTGTGTGATATGTGTTTTTATGTTAAATTTTGATTTTAATGTGATTTTTGCTTTGCAATAGATAAATCGAACTTCATTTATGTTTTCAGCAAGTTCAACTTTTGGTGATTATATTCCAGTAAAATGACTTGCCTTGTTCAAGTAAATGTATCCATCAATTAAGTAATAGATGAACATTTTTTGACAGTTGATATGAGTTAAGTTGTTGATTTCAGCTGAAAATACTTGTGATAAGCATATGTCGGCTCTGTTTGTTGGCAAATAACAGTGGGTCGTTTCTGTTTCGGATTAGTGTATGAAAGAAATTTGAATGATGTCAATTAGATGTGTTGGAAGATGTACCCAAGTTTGTTCACAAAAATAGGGTAGATGCATTTTTTTTGTTTTCTGTTATTGTGTTTGACGCTGTTCAGTGGCTCTGATTATTTATCACTACCATTGTATAATATTCTTGCAAAAATAAAATAGAATGCTAGGAGTTTCACTATTTCAATCAATCACTGATAGCACAAAACTCTGCCTCGATTTATTTTATTTAGAACTTCGATTCTTCTGGTGACAATACACTTCTTCATCAGTTGGAATGATACATAGTAGTTCTGTATCAGTGAGTGATATCTAACAGTTCTGTAATTTCTGATGGTCATTCCAATCTTTGCATGTCTTACTTACTGAAACGTGTACTTATTATCTATCTCTAGAATACTAGAGAAACAGCGCATGCCCTTAGGAAGATGCCTTTGAACAAGGCAAAGAGCTATTTGGAGGATGTTCTTGCCCACAAACAAGCCATCCCCTTCACCCGCTTTTGTCGTGGGGTTGGTCGCACTGCTCAGGCGAAGAATCGCCACTCAAATGGACAAGGACGTTGGCCTGTCAAATCTGCAAAGTTTATCCTCGATTTGCTAAAAAATGCTGAGAGTAATGCTGAAGTATGTTCAAATTTGTTGGATTATATTATTTCCCTTGGTCCTTTGCTTTCGCTTTTCTCTAAAGATGAGTTTGTTGTTGTTTTCACCTCATTTTAGGTTAAAGGCTTGGATGTGGATTCACTTTACATTACTCACATCCAAGTAAACCAAGCACAGAAACAGAGGCGCCGTACATACCGTGCTCATGGAAGAATCAATCGTGAGTGCTCCTCTTATCTCCTCGATGGTGTTCTTATTGTAGTTAAGTATATGCATAACAAATTTAAACTTATTGACCTTTCTGCAGCTTATATGTCACATCCTTGCCATATCGAGCTGGTATTGTCTGAGAAGGAAGAATCTGTTAAGAAAGAGGTATAGTTTCTATCTGTCTCTTGTTCTTCCTCATAGTTGACTCTCATAACTTGAGTACATGGTGCCTACTTTATAACGGTTGCCTTTGCTGCTCATCAGTCATCTTTAGATCTTTTTGTTTCATGCCATTATGTTGTCTTCAGGTATATATTCTTTTGTAATTATCCTTTTTTTTTTTTATTCATGCAGCCTGAAACTCAGTTAGCCCCCAGGAAGACAAAGGCATCTTCCTGAGCAGAGAAAGGAATCCCGAAATTTTGGAAGTATAATTTCAATATTCCTTTAGCCTTTGTATCGGAAGAATTTAGTGCTATTTCAAACATTTCTTCATAGAATTTAGTGTTTTTTGTGTAATTTTACTATTTCGGAGCTTAAATTGGCTTGTGCTTTTTGAGCATGTGTATGAGGGAATTTTGGATTTCTATGGTCTTGCTTTTTCTAAGAATGAATTGGGATGTTAGTAGT</genome_strand>
        <mrna_strand>ACACCTTCTATCAGCAGCTGCAGGGGAACAGCAGCATCACCGGCAGCCATG......................................................................GTGAAGTATTCGAATGAACCAGAGAACCCAACCAAAT.....................................................................................................CTTGCAAAGCTAGGGGTTCGTATCTCAGAGCTCATTTTAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATACTAGAGAAACAGCGCATGCCCTTAGGAAGATGCCTTTGAACAAGGCAAAGAGCTATTTGGAGGATGTTCTTGCCCACAAACAAGCCATCCCCTTCACCCGCTTTTGTCGTGGGGTTGGTCGCACTGCTCAGGCGAAGAATCGCCACTCAAATGGACAAGGACGTTGGCCTGTCAAATCTGCAAAGTTTATCCTCGATTTGCTAAAAAATGCTGAGAGTAATGCTGAA................................................................................................GTTAAAGGCTTGGATGTGGATTCACTTTACATTACTCACATCCAAGTAAACCAAGCACAGAAACAGAGGCGCCGTACATACCGTGCTCATGGAAGAATCAATC.......................................................................................CTTATATGTCACATCCTTGCCATATCGAGCTGGTATTGTCTGAGAAGGAAGAATCTGTTAAGAAAGAG.............................................................................................................................................................................................CCTGAAACTCAGTTAGCCCCCAGGAAGACAAAGGCATCTTCCTGAGCAGAGAAAGGAATCCCGAAATTTTGGAAGTATAATTTCAATATTCCTTTAGCCTTTGTATCGGAAGAATTTAGTGCTATTTCAAACATTTCTTCATAGAATTTAGTGTTTTTTGTGTAATTTTACTATTTCGGAGCTTAAATTGGCTTGTGCTTTTTGAGCATGTGTATGAGGGAATTTTGGATTTCTATGGTCTTGCTTTTTCTAAGAATGAATTGGGATGTTAGTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0127C05-mUEoa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U334783" ref_strand="+" ref_description="SGN-U334783        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | 60S ribosomal protein L17 (RPL17A), similar to GB:P51413 from (Arabidopsis thaliana); similar to ESTs gb:L33542 and gb:AA660016 | chr1:9515122-9516912 FORWARD | Aliases: F17L21.19, F17L21_19(evalue: 1e-62, score=236) genbank/nr: gi|15824574|gb|AAL09401.1| ribosomal protein [Petunia x hybrida](evalue: 5e-66, score=254)">
      <seq>tatctcagagctcattttaagaatactagagaaacagcgcatgcccttaggaagatgcctttgaacaaggcaaagagctatttggaggatgttcttgcccacaaacaagccatccccttcacccgcttttgtcgtggggttggtcgcactgctcaggcgaagaatcgccactcaaatggacaaggacgttggcctgtcaaatctgcaaagtttatcctcgatttgctaaaaaatgctgagagtaatgctgaagtatgttcaaatttgttggattatattatttcccttggtcctttgctttcgcttttctctaaagatgagtttgttgttgttttcacctcattttaggttaaaggcttggatgtggattcactttacattactcacatccaagtaaaccaagcacagaaacagaggcgccgtacataccgtgctcatggaagaatcaatccttatatgtcacatccttgccatatcgagctggtattgtctgagaaggaagaatctgttaagaaagagcctgaaactcagttagccccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0127C05-mUEoa/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06SLm0127C05.1" temp_strand="+" temp_description="C06SLm0127C05.1  AC226020.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0127C05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="51991" stop="54107"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52291" g_stop="52311" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52312" i_stop="53012" i_length="701">
            <donor d_prob="0.947" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53013" g_stop="53442" g_length="430"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="451" r_length="430" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53443" i_stop="53529" i_length="87">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53530" g_stop="53597" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="452" r_stop="519" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53598" i_stop="53786" i_length="189">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53787" g_stop="53807" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="520" r_stop="540" r_length="21" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0127C05.1" gen_strand="+" ref_id="SGN-U334783" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>540</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0127C05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U334783" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52291" e_stop="52311"/>
          <exon e_start="53013" e_stop="53442"/>
          <exon e_start="53530" e_stop="53597"/>
          <exon e_start="53787" e_stop="53807"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCTCAGAGCTCATTTTAAGGTGTGTGATATGTGTTTTTATGTTAAATTTTGATTTTAATGTGATTTTTGCTTTGCAATAGATAAATCGAACTTCATTTATGTTTTCAGCAAGTTCAACTTTTGGTGATTATATTCCAGTAAAATGACTTGCCTTGTTCAAGTAAATGTATCCATCAATTAAGTAATAGATGAACATTTTTTGACAGTTGATATGAGTTAAGTTGTTGATTTCAGCTGAAAATACTTGTGATAAGCATATGTCGGCTCTGTTTGTTGGCAAATAACAGTGGGTCGTTTCTGTTTCGGATTAGTGTATGAAAGAAATTTGAATGATGTCAATTAGATGTGTTGGAAGATGTACCCAAGTTTGTTCACAAAAATAGGGTAGATGCATTTTTTTTGTTTTCTGTTATTGTGTTTGACGCTGTTCAGTGGCTCTGATTATTTATCACTACCATTGTATAATATTCTTGCAAAAATAAAATAGAATGCTAGGAGTTTCACTATTTCAATCAATCACTGATAGCACAAAACTCTGCCTCGATTTATTTTATTTAGAACTTCGATTCTTCTGGTGACAATACACTTCTTCATCAGTTGGAATGATACATAGTAGTTCTGTATCAGTGAGTGATATCTAACAGTTCTGTAATTTCTGATGGTCATTCCAATCTTTGCATGTCTTACTTACTGAAACGTGTACTTATTATCTATCTCTAGAATACTAGAGAAACAGCGCATGCCCTTAGGAAGATGCCTTTGAACAAGGCAAAGAGCTATTTGGAGGATGTTCTTGCCCACAAACAAGCCATCCCCTTCACCCGCTTTTGTCGTGGGGTTGGTCGCACTGCTCAGGCGAAGAATCGCCACTCAAATGGACAAGGACGTTGGCCTGTCAAATCTGCAAAGTTTATCCTCGATTTGCTAAAAAATGCTGAGAGTAATGCTGAAGTATGTTCAAATTTGTTGGATTATATTATTTCCCTTGGTCCTTTGCTTTCGCTTTTCTCTAAAGATGAGTTTGTTGTTGTTTTCACCTCATTTTAGGTTAAAGGCTTGGATGTGGATTCACTTTACATTACTCACATCCAAGTAAACCAAGCACAGAAACAGAGGCGCCGTACATACCGTGCTCATGGAAGAATCAATCGTGAGTGCTCCTCTTATCTCCTCGATGGTGTTCTTATTGTAGTTAAGTATATGCATAACAAATTTAAACTTATTGACCTTTCTGCAGCTTATATGTCACATCCTTGCCATATCGAGCTGGTATTGTCTGAGAAGGAAGAATCTGTTAAGAAAGAGGTATAGTTTCTATCTGTCTCTTGTTCTTCCTCATAGTTGACTCTCATAACTTGAGTACATGGTGCCTACTTTATAACGGTTGCCTTTGCTGCTCATCAGTCATCTTTAGATCTTTTTGTTTCATGCCATTATGTTGTCTTCAGGTATATATTCTTTTGTAATTATCCTTTTTTTTTTTTATTCATGCAGCCTGAAACTCAGTTAGCCCCC</genome_strand>
        <mrna_strand>TATCTCAGAGCTCATTTTAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATACTAGAGAAACAGCGCATGCCCTTAGGAAGATGCCTTTGAACAAGGCAAAGAGCTATTTGGAGGATGTTCTTGCCCACAAACAAGCCATCCCCTTCACCCGCTTTTGTCGTGGGGTTGGTCGCACTGCTCAGGCGAAGAATCGCCACTCAAATGGACAAGGACGTTGGCCTGTCAAATCTGCAAAGTTTATCCTCGATTTGCTAAAAAATGCTGAGAGTAATGCTGAAGTATGTTCAAATTTGTTGGATTATATTATTTCCCTTGGTCCTTTGCTTTCGCTTTTCTCTAAAGATGAGTTTGTTGTTGTTTTCACCTCATTTTAGGTTAAAGGCTTGGATGTGGATTCACTTTACATTACTCACATCCAAGTAAACCAAGCACAGAAACAGAGGCGCCGTACATACCGTGCTCATGGAAGAATCAATC.......................................................................................CTTATATGTCACATCCTTGCCATATCGAGCTGGTATTGTCTGAGAAGGAAGAATCTGTTAAGAAAGAG.............................................................................................................................................................................................CCTGAAACTCAGTTAGCCCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0127C05-mUEoa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U314103" ref_strand="+" ref_description="SGN-U314103        Tomato 200607 #1 [22 ESTs aligned] arabidopsis/peptide: | Symbol: None | 60S ribosomal protein L17 (RPL17A), similar to GB:P51413 from (Arabidopsis thaliana); similar to ESTs gb:L33542 and gb:AA660016 | chr1:9515122-9516912 FORWARD | Aliases: F17L21.19, F17L21_19(evalue: 4e-78, score=288) genbank/nr: gi|15824574|gb|AAL09401.1| ribosomal protein [Petunia x hybrida](evalue: 2e-83, score=311)">
      <seq>gaagcagacatcttctatcagcagctgcaggggaacagcagcatcaccggcggccatggtgaagtattcgaatgaaccggagaacccaaccaaatcttgcaaagctaggggttcggatctcagagctcatttcaagaatactagagaaacagcgcatgcccttaggaagatgcctttgaacaaggcaaagagctacttggaggatgttcttgcccataaacaagccatccccttcacccgcttttgtcgcggggttggtcgtactgctcaggcaaagaatcgccactcaaatggacaaggacgttggcctgtcaaatctgcaaagtttattctggatttgctcaaaaatgctgagagtaatgctgaagttaaaggcttggatgtggattcactttacatcactcacatccaagtaaaccaagcacagaaacagaggcgccgtacataccgtgctcatggaagaatcaatccttatatgtctcatccgtgccatatcgagttggtattgtctgaaaaggaagaatctgttaagaaagagcctgagactcaattggctcccaggaagacgaaggcatcttcttgatggaaggaatgaattcctaaattttgaaagtataatttcaatacctatagccttggtatcagaagaatttagtgctatttcaaacatttctttataggaatttgtgttattgtgtaatttttactacttcagagcttaaattgggttgtgctttttgaagcatgtttatgaggaaatttttggatttctataaaaaaaaaaaaaaaaagagtatgtttatagtattctgattctgaanaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0127C05-mUEoa/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06SLm0127C05.1" temp_strand="+" temp_description="C06SLm0127C05.1  AC226020.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0127C05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="55956" stop="58997"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56256" g_stop="56313" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56314" i_stop="56382" i_length="69">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56383" g_stop="56419" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="95" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56420" i_stop="56519" i_length="100">
            <donor d_prob="0.967" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56520" g_stop="56560" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="136" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="56561" i_stop="57600" i_length="1040">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="57601" g_stop="57831" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="367" r_length="231" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="57832" i_stop="57926" i_length="95">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.946" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="57927" g_stop="58029" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="470" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="58030" i_stop="58116" i_length="87">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="58117" g_stop="58184" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="471" r_stop="538" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="58185" i_stop="58415" i_length="231">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="58416" g_stop="58698" g_length="283"/>
          <reference_exon_boundary r_type="cDNA" r_start="539" r_stop="821" r_length="283" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="822" polyA_stop="857"/>
      <MATCH_line gen_id="C06SLm0127C05.1" gen_strand="+" ref_id="SGN-U314103" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>821</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0127C05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U314103" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56256" e_stop="56313"/>
          <exon e_start="56383" e_stop="56419"/>
          <exon e_start="56520" e_stop="56560"/>
          <exon e_start="57601" e_stop="57831"/>
          <exon e_start="57927" e_stop="58029"/>
          <exon e_start="58117" e_stop="58184"/>
          <exon e_start="58416" e_stop="58698"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGCAGACATCTTCTATCAGCAGCTGCAGGGGAACAGCAGCATCACCGGCGGCCATGGTTAGTTATTCTGTTAAACCTTCTAATTCTCCGATTGATTTCTGTGTTAATTCGTTTGTTTTTATGTAGGTGAAGTATTCGAATGAACCGGAGAACCCAACCAAATGTGAGTACTCAATACGATACACATTTTATCTTTTTAGCATTATTTGAGAGTGTTTATATATGTTGGTTTTGTTTTAATTTTTTTAATGTTCTTGTATCAGCTTGCAAAGCTAGGGGTTCGGATCTCAGAGCTCATTTCAAGGTGTGTGATATATATTTTTATGTTAAATTTTGATCTTATGTGATTTGCTGCTTTGCAAGCTATTCGTGTCTGTTATTTTTGTTGTTTCGTTGCGAGGTTCAATATTTTCATTTTTTTTTCTCGCATTTGCATATTGTTCGTAGTTGTTACTGTGTTATAATCAAGATAAATTGAAATTCATTTGTTTGTATTAGCCATTTAGTGGTTTCCCTTATTCTGGATTTAGCAAGCTTGTTTTTTGTGTTGCCCATAAAAAATGACTTGCCTTGTTTCATTAAATGTATGCATCTATTGAGTAGTGGTTAAACAATTTTTGACAGTTCCATATGCTTTTATAATTCTGTGGTTTAAGCTGGCTCTTCAGCTAAAGTACTTGTGATAAGCATGGTGGCCGTTTTCAATTCTGTTTCAATTAGTGTATGACAGAAGAGGGTGGTACTGTGCAAATTGAATGTTGATGTCAATAGCTGTATTTGAGGCATCTACTTACCAAGTGAAAGTGTAAATGCACTATTTTTTCTTCTGTTCTTGGTTGTTCTCTGGACTGTTGAGATTGCGTGCACTTTAGACATCTAAGCTCTGAGATTTTTTCTTGCCTATTAAGTTAGAGGCTCTTTTAATTAAAGAAGTTGGAGTTCCACAGACCACTCTGAGTTAATAATTTCATCAGGGCACTGCATTAATTTGTAGACTTTGACTCTGAGAACACTGTGTGTCAGTATTCTTTTGTGCTCTTTGTTGCTCTGACTAGTTATCACTATCATTTATAATATTTAGCAAAAATAGAATAAACTACAAGGAGTTCACTATCTCAATCAAGCACTGATAGCACAAAACTCTTCCTTGACTTCTTTTATTCTCTTCTGGTGACAATTGGTTTTCTAGGACCATTATTCTTCTTCTGTACACTTCTGCACTCGTTGTTATGATATATAAAGGTTCTATATCAGTTGTGTGATATTTAACAGTTCTGTAATTTCTGATGGTCATAATCTTTTTGTGCCTTCCTTGCTCAAATGTGTGTTATTATCTATCTCTAGAATACTAGAGAAACAGCGCATGCCCTTAGGAAGATGCCTTTGAACAAGGCAAAGAGCTACTTGGAGGATGTTCTTGCCCATAAACAAGCCATCCCCTTCACCCGCTTTTGTCGCGGGGTTGGTCGTACTGCTCAGGCAAAGAATCGCCACTCAAATGGACAAGGACGTTGGCCTGTCAAATCTGCAAAGTTTATTCTGGATTTGCTCAAAAATGCTGAGAGTAATGCTGAAGTATGTTCAAATTTGTTGGATTATATTATTTCCCTTGGTCCTTTGCTTTCGCTTTTCTCTAAAGATGAGTTTGTTGTTGCTTCACCTCATTTTAGGTTAAAGGCTTGGATGTGGATTCACTTTACATCACTCACATCCAAGTAAACCAAGCACAGAAACAGAGGCGCCGTACATACCGTGCTCATGGAAGAATCAATCGTGAGTGCTCCTCTTATTTCCTCGATGGTGTTCTTATTGTAGTTAAGTATATGGATAACAAATTTAAACTTATTGACCTTTCTGCAGCTTATATGTCTCATCCGTGCCATATCGAGTTGGTATTGTCTGAAAAGGAAGAATCTGTTAAGAAAGAGGTATAGTTTCTATCTGTCTCCTCGCTCTTCCTTAGTTAATTCTTATTATAACTTCAATACATGGTGTCTGCTCTATGTCAGTAGCCTTTGCTTTTTCATTACTCATCTTTTGATCTTCTTTTTTATTCTTCCATTATGTCAGTCATCTTTAGATCTTTTTGTTTCTGCCATTATGTTGTGTCAAGTATCATATCTTCTGCAAGTATCCTAAACATTTTTTTATTCATGCAGCCTGAGACTCAATTGGCTCCCAGGAAGACGAAGGCATCTTCTTGATGGAAGGAATGAATTCCTAAATTTTGAAAGTATAATTTCAATACCTATAGCCTTGGTATCAGAAGAATTTAGTGCTATTTCAAACATTTCTTTATAGGAATTTGTGTTATTGTGTAATTTTTACTACTTCAGAGCTTAAATTGGGTTGTGCTTTTTGAAGCATGTTTATGAGGAAATTTTTGGATTTCTATATTCTGGCTTTTTCGAAGAGTATGTTTATAGTATTCTGATTCTGAAA</genome_strand>
        <mrna_strand>GAAGCAGACATCTTCTATCAGCAGCTGCAGGGGAACAGCAGCATCACCGGCGGCCATG.....................................................................GTGAAGTATTCGAATGAACCGGAGAACCCAACCAAAT....................................................................................................CTTGCAAAGCTAGGGGTTCGGATCTCAGAGCTCATTTCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATACTAGAGAAACAGCGCATGCCCTTAGGAAGATGCCTTTGAACAAGGCAAAGAGCTACTTGGAGGATGTTCTTGCCCATAAACAAGCCATCCCCTTCACCCGCTTTTGTCGCGGGGTTGGTCGTACTGCTCAGGCAAAGAATCGCCACTCAAATGGACAAGGACGTTGGCCTGTCAAATCTGCAAAGTTTATTCTGGATTTGCTCAAAAATGCTGAGAGTAATGCTGAA...............................................................................................GTTAAAGGCTTGGATGTGGATTCACTTTACATCACTCACATCCAAGTAAACCAAGCACAGAAACAGAGGCGCCGTACATACCGTGCTCATGGAAGAATCAATC.......................................................................................CTTATATGTCTCATCCGTGCCATATCGAGTTGGTATTGTCTGAAAAGGAAGAATCTGTTAAGAAAGAG.......................................................................................................................................................................................................................................CCTGAGACTCAATTGGCTCCCAGGAAGACGAAGGCATCTTCTTGATGGAAGGAATGAATTCCTAAATTTTGAAAGTATAATTTCAATACCTATAGCCTTGGTATCAGAAGAATTTAGTGCTATTTCAAACATTTCTTTATAGGAATTTGTGTTATTGTGTAATTTTTACTACTTCAGAGCTTAAATTGGGTTGTGCTTTTTGAAGCATGTTTATGAGGAAATTTTTGGATTTCTATAAAAAAAAAAAAAAAAAGAGTATGTTTATAGTATTCTGATTCTGAAN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0127C05-mUEoa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U334784" ref_strand="+" ref_description="SGN-U334784        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: beta-galactosidase(evalue: 5e-29, score=131)">
      <seq>cgtttaaggtacataccgtgctcatggaagaatcaatccttatttttaatatangtggaatatagagttggtattgtatgaaaaggaagaatntgttaagaaagagattgagagtctattggctcccaggaagacgaaggcatcttcttgatggaaggaatgaattcctaaattttgaaagtataatttcaatacctatagccttggtatcagaagaatttagtgctatttcaaacatttctttataggaatttgtgttattgtgtaatttttactacttcagagcttaaattgggttgtgctttttgaagcatgtttatgaggaaatttttggatttctggaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0127C05-mUEoa/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06SLm0127C05.1" temp_strand="+" temp_description="C06SLm0127C05.1  AC226020.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0127C05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="53113" stop="58949"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57926" g_stop="57933" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="8" r_length="8" r_score="0.750"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57934" i_stop="57999" i_length="66">
            <donor d_prob="0.993" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58000" g_stop="58029" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="38" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58030" i_stop="58116" i_length="87">
            <donor d_prob="0.975" d_score="0.00"/>
            <acceptor a_prob="0.960" a_score="0.78"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58117" g_stop="58184" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="106" r_length="68" r_score="0.824"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58185" i_stop="58415" i_length="231">
            <donor d_prob="1.000" d_score="0.90"/>
            <acceptor a_prob="0.975" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58416" g_stop="58649" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="340" r_length="234" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="343" polyA_stop="358"/>
      <MATCH_line gen_id="C06SLm0127C05.1" gen_strand="+" ref_id="SGN-U334784" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>340</cumulative_length_of_scored_exons>
        <coverage percentage="0.950" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0127C05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U334784" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57926" e_stop="57933"/>
          <exon e_start="58000" e_stop="58029"/>
          <exon e_start="58117" e_stop="58184"/>
          <exon e_start="58416" e_stop="58649"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTAAAGGCTTGGATGTGGATTCACTTTACATCACTCACATCCAAGTAAACCAAGCACAGAAACAGAGGCGCCGTACATACCGTGCTCATGGAAGAATCAATCGTGAGTGCTCCTCTTATTTCCTCGATGGTGTTCTTATTGTAGTTAAGTATATGGATAACAAATTTAAACTTATTGACCTTTCTGCAGCTTATATGTCTCATCCGTGCCATATCGAGTTGGTATTGTCTGAAAAGGAAGAATCTGTTAAGAAAGAGGTATAGTTTCTATCTGTCTCCTCGCTCTTCCTTAGTTAATTCTTATTATAACTTCAATACATGGTGTCTGCTCTATGTCAGTAGCCTTTGCTTTTTCATTACTCATCTTTTGATCTTCTTTTTTATTCTTCCATTATGTCAGTCATCTTTAGATCTTTTTGTTTCTGCCATTATGTTGTGTCAAGTATCATATCTTCTGCAAGTATCCTAAACATTTTTTTATTCATGCAGCCTGAGACTCAATTGGCTCCCAGGAAGACGAAGGCATCTTCTTGATGGAAGGAATGAATTCCTAAATTTTGAAAGTATAATTTCAATACCTATAGCCTTGGTATCAGAAGAATTTAGTGCTATTTCAAACATTTCTTTATAGGAATTTGTGTTATTGTGTAATTTTTACTACTTCAGAGCTTAAATTGGGTTGTGCTTTTTGAAGCATGTTTATGAGGAAATTTTTGGATTTCT</genome_strand>
        <mrna_strand>CGTTTAAG..................................................................GTACATACCGTGCTCATGGAAGAATCAATC.......................................................................................CTTATTTTTAATATANGTGGAATATAGAGTTGGTATTGTATGAAAAGGAAGAATNTGTTAAGAAAGAG.......................................................................................................................................................................................................................................ATTGAGAGTCTATTGGCTCCCAGGAAGACGAAGGCATCTTCTTGATGGAAGGAATGAATTCCTAAATTTTGAAAGTATAATTTCAATACCTATAGCCTTGGTATCAGAAGAATTTAGTGCTATTTCAAACATTTCTTTATAGGAATTTGTGTTATTGTGTAATTTTTACTACTTCAGAGCTTAAATTGGGTTGTGCTTTTTGAAGCATGTTTATGAGGAAATTTTTGGATTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0127C05-mUEoa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U341900" ref_strand="+" ref_description="SGN-U341900        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | zinc finger (CCCH-type) family protein, contains Pfam domain, PF00642: Zinc finger C-x8-C-x5-C-x3-H type (and similar) | chr3:17952387-17954561 FORWARD | Aliases: T29H11.40(evalue: 8e-48, score=187) genbank/nr: gi|15228379|ref|NP_190414.1| hypothetical protein [Arabidopsis thaliana] gi|7487535|pir||T06698 hypothetical protein T29H11.40 - Arabidopsis thaliana gi|4678344|emb|CAB41154.1| putative protein [Arabidopsis thaliana](evalue: 6e-46, score=187)">
      <seq>tgcaggtttcatcatcctgatcctagtacagtgactggaaacaatccttcccttggatacaacaatggtggatctgctccagtacaaagtgcctcctattcaccagtgtcttcttggtcttcaccacgagcatcgaatgagacatctccttttgtaccagtggtatattcagcaaaccaaggcattcttcctctgagtccagaatggaacaggtttcaggctccggtctatccaacctcagagaagagcctacctactcctccagcttttactgtgaaggatccagcaactaagacaaacatctattcccgacctcaaccaccgtggcttgttgaagaataccctgaacgtccaggtcagcctgattgcagttacttcattaaaacaggagattgtaaatataagtcttactgcaaatttcatcatccgaagactcaaaaatcattgacaaaccctccgagtgttctcaatgacaaaggcctgccactaagaccaggccaagctgtctgttcattctatagccgttacgggatttgcaagtatggacctgcctgtaagtttgatcatcccgaacatattgacaacgcaccagcgtcttctcctcggcctgctttttatcagcctccatttggcatttcttctgcatcagatggcttgaggatggcgaggaaaggaaatggaagtggctctctagtacatcagtctgtctaagaaatctttgcatccatttcacccagaatttagaatagaaatcacatggtttacagacagactggaaactctttatagtctttttagcgttttgtgttgtgaaaagctcaagcaaataggattttgtata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0127C05-mUEoa/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06SLm0127C05.1" temp_strand="-" temp_description="C06SLm0127C05.1  AC226020.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0127C05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="61699" stop="59424"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61399" g_stop="61181" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="219" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61180" i_stop="60689" i_length="492">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60688" g_stop="60413" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="495" r_length="276" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="60412" i_stop="60070" i_length="343">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60069" g_stop="59724" g_length="346"/>
          <reference_exon_boundary r_type="cDNA" r_start="496" r_stop="841" r_length="346" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0127C05.1" gen_strand="-" ref_id="SGN-U341900" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>841</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0127C05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U341900" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61399" e_stop="61181"/>
          <exon e_start="60688" e_stop="60413"/>
          <exon e_start="60069" e_stop="59724"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAGGTTTCATCATCCTGATCCTAGTACAGTGACTGGAAACAATCCTTCCCTTGGATACAACAATGGTGGATCTGCTCCAGTACAAAGTGCCTCCTATTCACCAGTGTCTTCTTGGTCTTCACCACGAGCATCGAATGAGACATCTCCTTTTGTACCAGTGGTATATTCAGCAAACCAAGGCATTCTTCCTCTGAGTCCAGAATGGAACAGGTTTCAGGTAATTTATGCATTAATTTAACTTCTCTGTTTCTGAAATGATTGTTGTTTATGGTTTGTCCTGAAAGATGGGTCATTGTGTCTAATGCTTCAGCAAATCTCTGTCTTTCATTCACGGTATATTGTGTCTGGTACTTCTATTCCAATGCAATGCAAGAATTATCAGTTTTGATATGTAAATTTAACGAAGAGAGATTCAACTAGTATATTTGCAGCTCAACACACAGAATAGCAGTTTGTCAAGCTCCATGTACCATGCCATTCTATTTTGGTTCAATTAACTACATGTTTTTTGGACACATTTTATAAAATACATTAGTCACTGCAAAGAAAAGATTTTCTATGATGTCATACGCAATGTGAATTAAGTGAAGTTTATAATCATTTTACTATTTTTCTTTGTTTGTAAATCATAAAACTTATATGACAGAGTGTTTGCCTATTGTTCAATGAGTTTCCTCTGACTGTACTTTGTTTGTTTCTGCTGGTTCAGGCTCCGGTCTATCCAACCTCAGAGAAGAGCCTACCTACTCCTCCAGCTTTTACTGTGAAGGATCCAGCAACTAAGACAAACATCTATTCCCGACCTCAACCACCGTGGCTTGTTGAAGAATACCCTGAACGTCCAGGTCAGCCTGATTGCAGTTACTTCATTAAAACAGGAGATTGTAAATATAAGTCTTACTGCAAATTTCATCATCCGAAGACTCAAAAATCATTGACAAACCCTCCGAGTGTTCTCAATGACAAAGGCCTGCCACTAAGACCAGTAAGTTTTGTCTCTCCAGATTTAAAAGCTTTTTGATTTTTCTTAGGAATTCTCTTTTTGAGGCATATGTTGGTGGATATTTAGCCGGTGTTCGAGGACACCTGCTCCTCTTGATGTCCTTAATTTCTAGCTAATGTTTGAGGACACTTGTTAGTTAAGGACATGGAAGCAACTTCTTCAAGGAATACTTAATTCCTTTCAAGATGTTTGTTTGTTCTTATATAGTAGCAGTTGGCCAAGATTTATTTCAGACTTTCTCACAATAGATCTCAATTATGGACAAAATAATTGTGAACTTGTGCTTTCCATACAAAGTTTATTTCATTTTGTTTTGTAAATGTAGGGCCAAGCTGTCTGTTCATTCTATAGCCGTTACGGGATTTGCAAGTATGGACCTGCCTGTAAGTTTGATCATCCCGAACATATTGACAACGCACCAGCGTCTTCTCCTCGGCCTGCTTTTTATCAGCCTCCATTTGGCATTTCTTCTGCATCAGATGGCTTGAGGATGGCGAGGAAAGGAAATGGAAGTGGCTCTCTAGTACATCAGTCTGTCTAAGAAATCTTTGCATCCATTTCACCCAGAATTTAGAATAGAAATCACATGGTTTACAGACAGACTGGAAACTCTTTATAGTCTTTTTAGCGTTTTGTGTTGTGAAAAGCTCAAGCAAATAGGATTTTGTATA</genome_strand>
        <mrna_strand>TGCAGGTTTCATCATCCTGATCCTAGTACAGTGACTGGAAACAATCCTTCCCTTGGATACAACAATGGTGGATCTGCTCCAGTACAAAGTGCCTCCTATTCACCAGTGTCTTCTTGGTCTTCACCACGAGCATCGAATGAGACATCTCCTTTTGTACCAGTGGTATATTCAGCAAACCAAGGCATTCTTCCTCTGAGTCCAGAATGGAACAGGTTTCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCCGGTCTATCCAACCTCAGAGAAGAGCCTACCTACTCCTCCAGCTTTTACTGTGAAGGATCCAGCAACTAAGACAAACATCTATTCCCGACCTCAACCACCGTGGCTTGTTGAAGAATACCCTGAACGTCCAGGTCAGCCTGATTGCAGTTACTTCATTAAAACAGGAGATTGTAAATATAAGTCTTACTGCAAATTTCATCATCCGAAGACTCAAAAATCATTGACAAACCCTCCGAGTGTTCTCAATGACAAAGGCCTGCCACTAAGACCA.......................................................................................................................................................................................................................................................................................................................................................GGCCAAGCTGTCTGTTCATTCTATAGCCGTTACGGGATTTGCAAGTATGGACCTGCCTGTAAGTTTGATCATCCCGAACATATTGACAACGCACCAGCGTCTTCTCCTCGGCCTGCTTTTTATCAGCCTCCATTTGGCATTTCTTCTGCATCAGATGGCTTGAGGATGGCGAGGAAAGGAAATGGAAGTGGCTCTCTAGTACATCAGTCTGTCTAAGAAATCTTTGCATCCATTTCACCCAGAATTTAGAATAGAAATCACATGGTTTACAGACAGACTGGAAACTCTTTATAGTCTTTTTAGCGTTTTGTGTTGTGAAAAGCTCAAGCAAATAGGATTTTGTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0127C05-mUEoa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U326954" ref_strand="+" ref_description="SGN-U326954        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: AT5G63200.1 | Symbol: None | tetratricopeptide repeat (TPR)-containing protein, low similarity to SP:P28290 Sperm-specific antigen 2 (Cleavage signal-1 protein) (CS-1) Homo sapiens; contains Pfam profile PF00515: TPR Domain | chr5:25366237-25370228 FORWARD | Aliases: MDC12.17, MDC12_17, AT5G63210 (evalue: 4e-116, score=414) genbank/nr: gi|51969340|dbj|BAD43362.1| unknown protein [Arabidopsis thaliana] (evalue: 3e-114, score=414)">
      <seq>ttctgcagatcaagtcactgcagccaatgttgccaaagagtgtttactagcagctttaaaagcagactcgaaagcggctcacatttggacaaatctagctaatgcttattacttgatgggtgatcataggagctctgcaaaatgcttggaaaaggcaggaaaaattgatcctaattgtttagcgacaagatatgcggttggagttcaccgcatcagggatgcagagaggtcccagaatcccaatgagcagctctcatgggctggtattgagatggcctcaatactaagagaaggagattctacttcgatagagcctccagtagcatgggctggtctcgccatggtccacagggcccaacatgaaattgtggcaggatttgaagttgagcataatgaattggtggaagtcaaggagcatgctatctatagtctaaagcaggcaatagccgaagatcctgctgatgctgttcaatggcatcagcttggccttcatagtctgtgtacccaacaatttaagacgtctcaaacgtacctcaaagctgcagttgcacgccgtaaggactgcacctatgcctggtcaaatcttggtatttcactgcaactatccgaggagtcttctcaagctgaatcggtgtataaacaagcattgtcactagctacaccaaaacaagcgcacacaatattttcaaaccttggaaatctctatcggcagctaaaacagtatgaatgtgcaaaggcaatgttcaataaatcacttgaactgcaacctggatatgcacctgctttaaacaatttaggtcttgtatatgttgctgaaggaaagtggaacgaagcaaaggactcattcgacaaggcaatccaggcagatccattgcttgatgctgccaaatccaacatgattaaagcttctaacatgctcaacatgtataccagcatgtcatgatgtctgcgattcgttctattaaaaatttgtccccctgtaattatttaggtggcgggagaaaaaaagaagggtagatcttaagatttggtaatatcagcttttttggattttagtttgttaaacttagctccttctggagttttagcaaagtagagattctttccaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0127C05-mUEoa/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06SLm0127C05.1" temp_strand="-" temp_description="C06SLm0127C05.1  AC226020.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0127C05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="69127" stop="66747"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68827" g_stop="68674" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="154" r_length="154" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68673" i_stop="68532" i_length="142">
            <donor d_prob="0.923" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68531" g_stop="68247" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="439" r_length="285" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68246" i_stop="67840" i_length="407">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67839" g_stop="67692" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="587" r_length="148" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67691" i_stop="67573" i_length="119">
            <donor d_prob="0.928" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67572" g_stop="67039" g_length="534"/>
          <reference_exon_boundary r_type="cDNA" r_start="588" r_stop="1121" r_length="534" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0127C05.1" gen_strand="-" ref_id="SGN-U326954" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>1121</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0127C05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U326954" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68827" e_stop="68674"/>
          <exon e_start="68531" e_stop="68247"/>
          <exon e_start="67839" e_stop="67692"/>
          <exon e_start="67572" e_stop="67039"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTGCAGATCAAGTCACTGCAGCCAATGTTGCCAAAGAGTGTTTACTAGCAGCTTTAAAAGCAGACTCGAAAGCGGCTCACATTTGGACAAATCTAGCTAATGCTTATTACTTGATGGGTGATCATAGGAGCTCTGCAAAATGCTTGGAAAAGGTACTTCTTCTTCAAGGCGACAATCAGCTTTAAACCTCACTTTTATCTGTTCTTACAAGATATTGATTCCTAGGCTTCTTGAATAGATGCATTAATGTTGATCTTGTATAAGTAATTTACATTCTTTTTCTTTAATGAGTAGGCAGGAAAAATTGATCCTAATTGTTTAGCGACAAGATATGCGGTTGGAGTTCACCGCATCAGGGATGCAGAGAGGTCCCAGAATCCCAATGAGCAGCTCTCATGGGCTGGTATTGAGATGGCCTCAATACTAAGAGAAGGAGATTCTACTTCGATAGAGCCTCCAGTAGCATGGGCTGGTCTCGCCATGGTCCACAGGGCCCAACATGAAATTGTGGCAGGATTTGAAGTTGAGCATAATGAATTGGTGGAAGTCAAGGAGCATGCTATCTATAGTCTAAAGCAGGTAGGCTTTAAAGTTTTTATATTTTTATCTAAGACTTATTACTTAGTTTGATAAGCTTTAAAGTGCCCATCTCATATGGGATGGGGGGAGTAGTTGAACATGTGATGAGGTGATCTATATGTACTTCCTCTATGGTGCAAGTGGTTACTTACGAAATTGTTTTTGAGTTGGAATTGCTTGAACTTATCTTTTACTGTGAAAGGAAATCAGTTGTCAAACTCTTTCTTGCATGTGTTTACTGCATTTAAGCTTCTTTAATACCTTGCATGTGTTTACTGCATGTAAGCTTCTTTGATTCCTTGCATCGGCTTCCTGACCTTTGATTTTCATTATGTTCTGCGACAGTCTTGCGAAATGAAGTTTGGACTGAATGCTTGGATTTCTTATTCTGATTTTGCAAATGACAGGCAATAGCCGAAGATCCTGCTGATGCTGTTCAATGGCATCAGCTTGGCCTTCATAGTCTGTGTACCCAACAATTTAAGACGTCTCAAACGTACCTCAAAGCTGCAGTTGCACGCCGTAAGGACTGCACCTATGCCTGGTCAAATCTTGGTAAATGCATCTCTCTTACACAATGTCATGCACATCTTTTTTCCTCCTCTTTTCTTCTCCATATTTGATCATCGTGAAAATAGCCTTCATGTCTTGCTGAATTTTTTTTTGCACTATAGGTATTTCACTGCAACTATCCGAGGAGTCTTCTCAAGCTGAATCGGTGTATAAACAAGCATTGTCACTAGCTACACCAAAACAAGCGCACACAATATTTTCAAACCTTGGAAATCTCTATCGGCAGCTAAAACAGTATGAATGTGCAAAGGCAATGTTCAATAAATCACTTGAACTGCAACCTGGATATGCACCTGCTTTAAACAATTTAGGTCTTGTATATGTTGCTGAAGGAAAGTGGAACGAAGCAAAGGACTCATTCGACAAGGCAATCCAGGCAGATCCATTGCTTGATGCTGCCAAATCCAACATGATTAAAGCTTCTAACATGCTCAACATGTATACCAGCATGTCATGATGTCTGCGATTCGTTCTATTAAAAATTTGTCCCCCTGTAATTATTTAGGTGGCGGGAGAAAAAAAGAAGGGTAGATCTTAAGATTTGGTAATATCAGCTTTTTTGGATTTTAGTTTGTTAAACTTAGCTCCTTCTGGAGTTTTAGCAAAGTAGAGATTCTTTCCAAAATACTGATGTC</genome_strand>
        <mrna_strand>TTCTGCAGATCAAGTCACTGCAGCCAATGTTGCCAAAGAGTGTTTACTAGCAGCTTTAAAAGCAGACTCGAAAGCGGCTCACATTTGGACAAATCTAGCTAATGCTTATTACTTGATGGGTGATCATAGGAGCTCTGCAAAATGCTTGGAAAAG..............................................................................................................................................GCAGGAAAAATTGATCCTAATTGTTTAGCGACAAGATATGCGGTTGGAGTTCACCGCATCAGGGATGCAGAGAGGTCCCAGAATCCCAATGAGCAGCTCTCATGGGCTGGTATTGAGATGGCCTCAATACTAAGAGAAGGAGATTCTACTTCGATAGAGCCTCCAGTAGCATGGGCTGGTCTCGCCATGGTCCACAGGGCCCAACATGAAATTGTGGCAGGATTTGAAGTTGAGCATAATGAATTGGTGGAAGTCAAGGAGCATGCTATCTATAGTCTAAAGCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................GCAATAGCCGAAGATCCTGCTGATGCTGTTCAATGGCATCAGCTTGGCCTTCATAGTCTGTGTACCCAACAATTTAAGACGTCTCAAACGTACCTCAAAGCTGCAGTTGCACGCCGTAAGGACTGCACCTATGCCTGGTCAAATCTTG.......................................................................................................................GTATTTCACTGCAACTATCCGAGGAGTCTTCTCAAGCTGAATCGGTGTATAAACAAGCATTGTCACTAGCTACACCAAAACAAGCGCACACAATATTTTCAAACCTTGGAAATCTCTATCGGCAGCTAAAACAGTATGAATGTGCAAAGGCAATGTTCAATAAATCACTTGAACTGCAACCTGGATATGCACCTGCTTTAAACAATTTAGGTCTTGTATATGTTGCTGAAGGAAAGTGGAACGAAGCAAAGGACTCATTCGACAAGGCAATCCAGGCAGATCCATTGCTTGATGCTGCCAAATCCAACATGATTAAAGCTTCTAACATGCTCAACATGTATACCAGCATGTCATGATGTCTGCGATTCGTTCTATTAAAAATTTGTCCCCCTGTAATTATTTAGGTGGCGGGAGAAAAAAAGAAGGGTAGATCTTAAGATTTGGTAATATCAGCTTTTTTGGATTTTAGTTTGTTAAACTTAGCTCCTTCTGGAGTTTTAGCAAAGTAGAGATTCTTTCCAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0127C05-mUEoa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U338127" ref_strand="+" ref_description="SGN-U338127        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: AT5G63200.1 | Symbol: None | tetratricopeptide repeat (TPR)-containing protein, low similarity to SP:P28290 Sperm-specific antigen 2 (Cleavage signal-1 protein) (CS-1) Homo sapiens; contains Pfam profile PF00515: TPR Domain | chr5:25366237-25370228 FORWARD | Aliases: MDC12.17, MDC12_17, AT5G63210 (evalue: 2e-54, score=185) genbank/nr: gi|51969340|dbj|BAD43362.1| unknown protein [Arabidopsis thaliana] (evalue: 2e-53, score=185)">
      <seq>ccaactccgttaaaattccttcaatgaagtcagaatctctcgtcgttgacaggaactccggctccgtgaggttacagccaccacttcagtatcagccgtcgaaaatcgttttggctgacctcaacgttgaccctcctgattccgacggcaatgattcagtacccgtagctgctgtgtctcctatatgtttatccagggtaatagctgatgaaatttgtcaggataagctgaagaaagacatagagattgcagaaacagaaggtaaacaattgaaaaaattgggaaaatgccgttcaagaatgggtaagttagaatgtcctcctgattgtaatggagctgatgcagaggctgatcataatgttcatggggtcccttcatctcgggaagaaaaagttagcagtcttaaaactggcttgatacatgttgcgcgaaaaatgccaaagaatgcacatgcacattttgtacttggcttgatgtatcaaaggatgggtcagcctcaaaaggcgattctggcatatgagaaatcggaagaaattttagttcgctctgaggaagcaatagacaggcctgagttgctttctttagtccaggttcatcatgcacagtgtattctgcttggaaccttggaagatgtagttcagatgaggaattagaccctgaagagcttgaaaatattcttgctaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0127C05-mUEoa/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06SLm0127C05.1" temp_strand="-" temp_description="C06SLm0127C05.1  AC226020.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0127C05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="74748" stop="71545"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74448" g_stop="74253" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="196" r_length="196" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74252" i_stop="73409" i_length="844">
            <donor d_prob="0.484" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73408" g_stop="73195" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="410" r_length="214" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73194" i_stop="72320" i_length="875">
            <donor d_prob="0.903" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72319" g_stop="72227" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="503" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="72226" i_stop="72152" i_length="75">
            <donor d_prob="0.820" d_score="1.00"/>
            <acceptor a_prob="0.434" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="72151" g_stop="72050" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="504" r_stop="605" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="72049" i_stop="71927" i_length="123">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="71926" g_stop="71845" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="606" r_stop="686" r_length="81" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0127C05.1" gen_strand="-" ref_id="SGN-U338127" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>687</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0127C05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U338127" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74448" e_stop="74253"/>
          <exon e_start="73408" e_stop="73195"/>
          <exon e_start="72319" e_stop="72227"/>
          <exon e_start="72151" e_stop="72050"/>
          <exon e_start="71926" e_stop="71845"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAACTCCGTTAAAATTCCTTCAATGAAGTCAGAATCTCTCGTCGTTGACAGGAACTCCGGCTCCGTGAGGTTACAGCCACCACTTCAGTATCAGCCGTCGAAAATCGTTTTGGCTGACCTCAACGTTGACCCTCCTGATTCCGACGGCAATGATTCAGTACCCGTAGCTGCTGTGTCTCCTATATGTTTATCCAGGTTCTACTTGATACTTTTATGAAATAAAAAAGAACAAATGAAAGAAGAAACTTGAATTGTTTAGAGTTTTCGGATTTTTTTTTTCATTTGAATGAGGCTAGGCTTGATTCCACACTCTTTGATTCACCAACTAATAAGAGTGGCATTCCTTTTGGGAAGGAATTAGTTGTAAGTGAAGATGAATCTATATCGTATTGTTAGAGCTGTTATTAAAAATTCAGTTGGCTGCCATGAAACATGTGAGAAATACCAACAACAACAACATAGCTAATGTAATCCCACCAATGGGGTCTGTGGGGGTTAGAATGTATGCACCTTACCCCTAACTATGTGGGAGTAGAGAGACTGTATTTGGTAGACACTCGGCTAAAAAAATAAATAATCTAAGCATGATTGCGAGAAAAATATGAGAACAAAATAGCAAGATACAAAACAAATGAAGCAACAAATAGTAATACAAATTGAAGAATAAGAGACTACGTCATTACTAGATAATACCGCTAATAAAGAGAAGAGGAAAGGAGGAGGCTAGCCCCCCCACATCTCCCACGTTAAATGTGATAACACTCGGCTACTTACTAACCTTCTACTCTAATCCTCGACCTCCAAACCTTCCTACATGTCCTCAATAAGTTCAAGTTGTGCATGTCCTATCTAATCACCTTTCCAAGTTCTTTCTCGGCCCACCTCTGCCTATAGAAAATAAATCTCGGAAAAGGAGTTCATATAACGGCAGAGGTAATTCACCTCGATCTGATGCTTTGTTGTTTAGCTTTATTATGTTGATATTATTGCTGGGACAAGAATAATTTATTACTTTAACCTGGGTCTGATATATTTGCAGGGTAATAGCTGATGAAATTTGTCAGGATAAGCTGAAGAAAGACATAGAGATTGCAGAAACAGAAGGTAAACAATTGAAAAAATTGGGAAAATGCCGTTCAAGAATGGGTAAGTTAGAATGTCCTCCTGATTGTAATGGAGCTGATGCAGAGGCTGATCATAATGTTCATGGGGTCCCTTCATCTCGGGAAGAAAAAGTTAGCAGTCTTAAAACTGTGAGTTGTATTTTGATCCATTTATATTTGCTATATTGATAGTTGGACAAGGTTGACAGGAAATTTTGCATGAACTCGAGTTCATTTATATGCACAACTTGTACATATTTCTTGAGACCAACTTGGTGTTTCATGATGAATATTTTGACTTATGTTTGTCTTTTGTTACCTAGATTTGTGTCTGTATCTATGTTTATATGAGAGCTAATCCTTTTAACTGTTTTCCATATCATATTTTTTCATCACTTGAATTGAATGCAGTGTTTTCAAATGCAAAAAGTGGGAAAGCAACAAAATCCACGGGACTTGAAACGACCAATGAGGACTGAAGCATATAATTAATTGAAATGTTAAAATACCAAAATATGAATTTAGTATTACAATAATTAACTTGTAATTAAAATAACTATTTTCAGTATTAATATATTATACTGTCTATATTCAACACAAGGGGTAATTCGCTGATTGTGATTTCCCTCAGATGATTTGTAACTATTTGCTGGAAGTTGAATAATATACTTCCTATGCTTTTAACCTAAAAAAAACACAAAGGTGGAATTTCTTTCTTCGAAGGAATGTAAATGGTTGGGAAGTAGAACGAGTACGTCTTTTGCTTCAGCTGCTGAGGAACATAGCTTTGGACGGCAACAGAACTGATTCTACTAGATGCAAGGGGCATCCCAAAGTTCTAAGAGAGTTCTTCTTGATTGTGCTTCACCTTGTGCCAGTTTAATCTTCTGCTTTTCTTTTCTCTTAAAATAAGGGTAATTGTGCTAGTAAAATCATCTGTTTTGATTGTCAGAGGAAAGAGTAGTTAAACACCTTCTTGGTGCAGTTGTTTAAACTTTTGCTGGATTCATCTACTTTGCTTGTAGGGCTTGATACATGTTGCGCGAAAAATGCCAAAGAATGCACATGCACATTTTGTACTTGGCTTGATGTATCAAAGGATGGGTCAGCCTCAAAAGGTAGCTTATGGATTCCAGTGTTCTTTTCCTGGGTCTGTTTTCATTCTCTCTCTCGCACTGAACAGCTCATTCTAGGCGATTCTGGCATATGAGAAATCGGAAGAAATTTTAGTTCGCTCTGAGGAAGCAATAGACAGGCCTGAGTTGCTTTCTTTAGTCCAGGTTCATCATGCACAGGTATGAATGAACTTACACTCAGAGAAATTGCAAATTTTGTAGTCAATGTTTCTCTATTAGTTTTTCAAACTTAAATATGTAATTACTGCTAACCACATACTTACACATCTCTTCCTGGTGCAGTGTATTCTGCTTGGAACCTTGGAAGATTGTAGTTCAGATGAGGAATTAGACCCTGAAGAGCTTGAAAATATTCTTGCTAAAC</genome_strand>
        <mrna_strand>CCAACTCCGTTAAAATTCCTTCAATGAAGTCAGAATCTCTCGTCGTTGACAGGAACTCCGGCTCCGTGAGGTTACAGCCACCACTTCAGTATCAGCCGTCGAAAATCGTTTTGGCTGACCTCAACGTTGACCCTCCTGATTCCGACGGCAATGATTCAGTACCCGTAGCTGCTGTGTCTCCTATATGTTTATCCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTAATAGCTGATGAAATTTGTCAGGATAAGCTGAAGAAAGACATAGAGATTGCAGAAACAGAAGGTAAACAATTGAAAAAATTGGGAAAATGCCGTTCAAGAATGGGTAAGTTAGAATGTCCTCCTGATTGTAATGGAGCTGATGCAGAGGCTGATCATAATGTTCATGGGGTCCCTTCATCTCGGGAAGAAAAAGTTAGCAGTCTTAAAACT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTGATACATGTTGCGCGAAAAATGCCAAAGAATGCACATGCACATTTTGTACTTGGCTTGATGTATCAAAGGATGGGTCAGCCTCAAAAG...........................................................................GCGATTCTGGCATATGAGAAATCGGAAGAAATTTTAGTTCGCTCTGAGGAAGCAATAGACAGGCCTGAGTTGCTTTCTTTAGTCCAGGTTCATCATGCACAG...........................................................................................................................TGTATTCTGCTTGGAACCTTGGAAGA-TGTAGTTCAGATGAGGAATTAGACCCTGAAGAGCTTGAAAATATTCTTGCTAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0127C05-mUEoa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U325000" ref_strand="+" ref_description="SGN-U325000        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: AT5G63200.1 | Symbol: None | tetratricopeptide repeat (TPR)-containing protein, low similarity to SP:P28290 Sperm-specific antigen 2 (Cleavage signal-1 protein) (CS-1) Homo sapiens; contains Pfam profile PF00515: TPR Domain | chr5:25366237-25370228 FORWARD | Aliases: MDC12.17, MDC12_17, AT5G63210 (evalue: 7e-16, score=80.9) genbank/nr: gi|51969340|dbj|BAD43362.1| unknown protein [Arabidopsis thaliana] (evalue: 5e-14, score=80.9)">
      <seq>ccaactccgttaaaattccttcaatgaagtcagaatctctcgtcgttgacaggaactccggctccgtgaggttacagccaccacttcagtatcagccgtcgaaaatcgttttggctgacctcaacgttgaccctcctgattccgacggcaatgattcagtacccgtagctgctgtgtctcctatatgtttatccagggtaatagctgatgaaatttgtcaggataagctgaagaaagacatagagattgcagaaacagaaggtaaacaattgaaaaaattgggaaaatgccgttcaagaatgggtaagttagaatgtcctcctgattgtaatggagctgatgcagaggctgatcataatgttcatggggtcccttcatctcgggaagaaaaagttagcagtcttaaaactgtgagttgtattttgatccatttatatttgctatattgatagttggacaaggttgacaggaaattttgcatgaactcgagttcatttatatgcacaacttgtacatatttcttgagaccaacttggtgtttcatgatgaatattttgacttatgtttgtcttttgttacctagatttgtgtctgtatctatgtttatatgagagctaatccttttaactgttttccatatcatattttttcatcacttgaattgaatgcagtgtttttcaatgcaaaaagtgggaaagcaacaaaatccacgggacttgaaacgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0127C05-mUEoa/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06SLm0127C05.1" temp_strand="-" temp_description="C06SLm0127C05.1  AC226020.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0127C05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="74748" stop="72579"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74448" g_stop="74253" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="196" r_length="196" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74252" i_stop="73409" i_length="844">
            <donor d_prob="0.484" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73408" g_stop="72879" g_length="530"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="726" r_length="530" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0127C05.1" gen_strand="-" ref_id="SGN-U325000" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>726</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0127C05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U325000" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74448" e_stop="74253"/>
          <exon e_start="73408" e_stop="72879"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAACTCCGTTAAAATTCCTTCAATGAAGTCAGAATCTCTCGTCGTTGACAGGAACTCCGGCTCCGTGAGGTTACAGCCACCACTTCAGTATCAGCCGTCGAAAATCGTTTTGGCTGACCTCAACGTTGACCCTCCTGATTCCGACGGCAATGATTCAGTACCCGTAGCTGCTGTGTCTCCTATATGTTTATCCAGGTTCTACTTGATACTTTTATGAAATAAAAAAGAACAAATGAAAGAAGAAACTTGAATTGTTTAGAGTTTTCGGATTTTTTTTTTCATTTGAATGAGGCTAGGCTTGATTCCACACTCTTTGATTCACCAACTAATAAGAGTGGCATTCCTTTTGGGAAGGAATTAGTTGTAAGTGAAGATGAATCTATATCGTATTGTTAGAGCTGTTATTAAAAATTCAGTTGGCTGCCATGAAACATGTGAGAAATACCAACAACAACAACATAGCTAATGTAATCCCACCAATGGGGTCTGTGGGGGTTAGAATGTATGCACCTTACCCCTAACTATGTGGGAGTAGAGAGACTGTATTTGGTAGACACTCGGCTAAAAAAATAAATAATCTAAGCATGATTGCGAGAAAAATATGAGAACAAAATAGCAAGATACAAAACAAATGAAGCAACAAATAGTAATACAAATTGAAGAATAAGAGACTACGTCATTACTAGATAATACCGCTAATAAAGAGAAGAGGAAAGGAGGAGGCTAGCCCCCCCACATCTCCCACGTTAAATGTGATAACACTCGGCTACTTACTAACCTTCTACTCTAATCCTCGACCTCCAAACCTTCCTACATGTCCTCAATAAGTTCAAGTTGTGCATGTCCTATCTAATCACCTTTCCAAGTTCTTTCTCGGCCCACCTCTGCCTATAGAAAATAAATCTCGGAAAAGGAGTTCATATAACGGCAGAGGTAATTCACCTCGATCTGATGCTTTGTTGTTTAGCTTTATTATGTTGATATTATTGCTGGGACAAGAATAATTTATTACTTTAACCTGGGTCTGATATATTTGCAGGGTAATAGCTGATGAAATTTGTCAGGATAAGCTGAAGAAAGACATAGAGATTGCAGAAACAGAAGGTAAACAATTGAAAAAATTGGGAAAATGCCGTTCAAGAATGGGTAAGTTAGAATGTCCTCCTGATTGTAATGGAGCTGATGCAGAGGCTGATCATAATGTTCATGGGGTCCCTTCATCTCGGGAAGAAAAAGTTAGCAGTCTTAAAACTGTGAGTTGTATTTTGATCCATTTATATTTGCTATATTGATAGTTGGACAAGGTTGACAGGAAATTTTGCATGAACTCGAGTTCATTTATATGCACAACTTGTACATATTTCTTGAGACCAACTTGGTGTTTCATGATGAATATTTTGACTTATGTTTGTCTTTTGTTACCTAGATTTGTGTCTGTATCTATGTTTATATGAGAGCTAATCCTTTTAACTGTTTTCCATATCATATTTTTTCATCACTTGAATTGAATGCAGTGTTTTCAAATGCAAAAAGTGGGAAAGCAACAAAATCCACGGGACTTGAAACGAC</genome_strand>
        <mrna_strand>CCAACTCCGTTAAAATTCCTTCAATGAAGTCAGAATCTCTCGTCGTTGACAGGAACTCCGGCTCCGTGAGGTTACAGCCACCACTTCAGTATCAGCCGTCGAAAATCGTTTTGGCTGACCTCAACGTTGACCCTCCTGATTCCGACGGCAATGATTCAGTACCCGTAGCTGCTGTGTCTCCTATATGTTTATCCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTAATAGCTGATGAAATTTGTCAGGATAAGCTGAAGAAAGACATAGAGATTGCAGAAACAGAAGGTAAACAATTGAAAAAATTGGGAAAATGCCGTTCAAGAATGGGTAAGTTAGAATGTCCTCCTGATTGTAATGGAGCTGATGCAGAGGCTGATCATAATGTTCATGGGGTCCCTTCATCTCGGGAAGAAAAAGTTAGCAGTCTTAAAACTGTGAGTTGTATTTTGATCCATTTATATTTGCTATATTGATAGTTGGACAAGGTTGACAGGAAATTTTGCATGAACTCGAGTTCATTTATATGCACAACTTGTACATATTTCTTGAGACCAACTTGGTGTTTCATGATGAATATTTTGACTTATGTTTGTCTTTTGTTACCTAGATTTGTGTCTGTATCTATGTTTATATGAGAGCTAATCCTTTTAACTGTTTTCCATATCATATTTTTTCATCACTTGAATTGAATGCAGTGTTTTTCAATGCAAAAAGTGGGAAAGCAACAAAATCCACGGGACTTGAAACGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0127C05-mUEoa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U344993" ref_strand="+" ref_description="SGN-U344993        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | speckle-type POZ protein-related, contains Pfam PF00651 : BTB/POZ domain; contains Pfam PF02135 : TAZ zinc finger; similar to Speckle-type POZ protein (SP:O43791) (Homo sapiens) | chr5:25350491-25352709 REVERSE | Aliases: MDC12.13, MDC12_13(evalue: 2e-79, score=292) genbank/nr: hypothetical(evalue: 2e-78, score=295)">
      <seq>tttgctagtgatgttgacatcatcaccttcgccggccgtcgcattccggcacattctaacgttctggctgctgcttcgacggttctggagagcgtattagtttgtcaacagcggagttttgagaaaaagatacagattctgggcgtcccctgcggctcagtttacgtgttcgtacaatttctctattccttcaagtgtactaaagatcagatggagaaacatggtattcatctactagcactttctcatgtgtacttagtaccatgcctaaaacacagatgcaccaaagcattggctgagcaattgacaattgaaaacgtcatagacatgattcaactcgcgaggctatgtgatgcacctcatctctatctcaaatgtatgaaatttttgcggagtaatttcagcaaagttaaaaaaactgaaggctggaagttccttcaacgtcatgatcccctgcttgaacttgaaattttacagttcactgatgaagccgagttgcggaagaagaggaggaggagacacacgcgggagcagaacttgtatttacag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0127C05-mUEoa/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06SLm0127C05.1" temp_strand="+" temp_description="C06SLm0127C05.1  AC226020.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0127C05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="87574" stop="91117"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87874" g_stop="87939" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87940" i_stop="88160" i_length="221">
            <donor d_prob="0.973" d_score="0.98"/>
            <acceptor a_prob="0.790" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88161" g_stop="88288" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="194" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88289" i_stop="90135" i_length="1847">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="90136" g_stop="90439" g_length="304"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="498" r_length="304" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="90440" i_stop="90766" i_length="327">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="90767" g_stop="90817" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="499" r_stop="549" r_length="51" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0127C05.1" gen_strand="+" ref_id="SGN-U344993" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>549</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0127C05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U344993" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87874" e_stop="87939"/>
          <exon e_start="88161" e_stop="88288"/>
          <exon e_start="90136" e_stop="90439"/>
          <exon e_start="90767" e_stop="90817"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGCTAGTGATGTTGACATCATCACCTCCGCCGGCCGTCGCATTCCGGCACATTCTAACGTTCTGGTATGCATGCATACTATCGCTTATTCCCTCGGGTTCATTTTACGTGAAAATGTTACTGTTCAGTCAAATAATTTTTTGAATCGTTAATTATTTTAATTTTAAACATGGTAAAGATCAGATCTTTCAAATGTGAATTAATCGAATTGTTTTCGAAAATTTATTTGTTTTGCAATTTGGAAATTACTGATGGATCTCCACTACGAAAAATAAAACTATGTTAGGCTGCTGCTTCGACGGTTCTGGAGAGCGTATTAGTTTGTCAACAGCGGAGTTTTGAGAAAAAGATACAGATTCTGGGCGTCCCCTGCGGCTCAGTTTACGTGTTCGTACAATTTCTCTATTCCTTCAAGTGAGTTTCATAATACATATTCTTTTTTCTTAATCTATATTTACTATAATCATTGCTACATATTTTCTTCTTTTTAGAGAAAATTATGCGGGTAAACAAATTTATAGTATTGTTTAATTATTCATGATAGTTATAGTTTGCTATAATTATCAATTGCCAGTAGCATTATATATTAATTACGTGAGCTGACTTTGAGTTTGTATGATTAATCACTTAATATACGTATAATTCGCCAGAATATCCAAATACATAGGTATAATATACAATTATTTAACATGTGTACATATACAATTCACCTCTCTATCCTCTCTCACTCGCCTCTCTCCTCCCTCTCTCAATCTCGCTCGCCTCTCTCATCCCTCTCCCAATCTTGCTCGCCTATCTCCCCCTCTCCTAATCTCCTTTGCATATATATAAATACATACGTATAATATAAAATTATCTAATCGATATACATATACAATTCACTTTTTTCCCATTCTTTTCTCCCTCTCTCTAGCCTTTCTCCTTTCTCTCACAGTCTCACTCGCCTCTCTTCTCCATAAAACATGTAAAATGTAGTTACGAATTGTAATTATCAAACTATAAAGAATAATTAAACTATTTTTAAGTGGCTATATGTGAAAATTTCGCTCTCTTTTTATTATGTACTAGTATCATAGTGTTATATGGATGTATTATTGTTTCAATGAATGCATTATTTGGATTAATAACTCTTTTACTGTGATTAAATAATATTACACGTCAACAATTTAAGAATAAATCTAGTACATAAACAACAAATAAAGATTATTAGCTAGTAAGTACGAGAAAATGAGAAATGATGAAAAAGTAACAATATAATTAAACCAAATTGATTTTAGAATTAGAGCTTTCCTCATTATCTAAGAATGAATTTTATAATACGATACAACAGCTTACCAACATAACATGTTAGGCGTGTACTTAGTGTTCTAATTGGAATTTAATATGCTGAATATAACGGCAAGGAGTTGGTGATTTATCCTCAAAGCTTAAATTTTGCCGCCCATTTCTTAAAATTATATTACACATGGCTCATTCATTGCCTATAAGAATCTTTAATAATATATTTACTTTCCCTCAATATTCTATGCACCGACAAGACCAAGTATTCCTATGTTATTGGAGTGTGTTACAAGTTATTATTTTTTATAAAAAAACGTTTTTATCAGCTAAATAGAATGGATTAACGGTTAATTCATTAGAGCGTCAGTGAGGATGCCCGGTAGCTTCTCTTTCAGCTTCTTAACTGCGTGGCTATGGACGGCTGTCCAAAGTGCAAGGGGTAAACTCGGATTCGGATAGAATAGGATTGTATGCCCGCATCTGACATTCGTTGGGCTTCTCTCTTCGGGAGCCTGCGCCCCGGCCTTTTTTTTCAAATAAACCCCTCCGGCCGGAAACTGAAACGACGTTCAGGTTTTCTGTATATTGCTTTGTATTTAAAACAATGTACAGTTTTCCTTCAGCGTTATTACGCTAGGTGTTATTCTAAGAATGACACCATGTCTCTGTTCCGGTTTCATTGACTGATTGAATGCCATAATTCTTATTTGTATTTTACTATTTATTGGTGCTGTTGGGAAATCTGCATGATTCCCTAAGTAACCAAACCAATCCCTGTCATTTGACACGGTAAATGGTCTGTTTTGAGCGTTTGAAGTGGACGAACAATCAGTCTACGTAACCGAGTTTCGATTTGTTATGAATGTCAATAAGTATAGTAAGTAAACTGCTTTCGATTGTTCAAATAATTTGATAACCAAGAGCTTTAGAAGAATATGGATCATGTCTAAAATGGTTATGTTATTGTTGTGCTAAATTAGGTGTACTAAAGATCAGATGGAGAAACATGGTATTCATCTACTAGCACTTTCTCATGTGTACTTAGTACCATGCCTAAAACACAGATGCACCAAAGCATTGGCTGAGCAATTGACAATTGAAAACGTCATAGACATGATTCAACTCGCGAGGCTATGTGATGCACCTCATCTCTATCTCAAATGTATGAAATTTTTGCGGAGTAATTTCAGCAAAGTTAAAAAAACTGAAGGCTGGAAGTTCCTTCAACGTCATGATCCCCTGCTTGAACTTGAAATTTTACAGTTCACTGATGAAGCCGAGTTGGTACGTAATATAACCCCCTTTATGATCTGACTCATTGTTTCAAGTTCAATCCAAAATTTTGATCATGGATCTCACAATAGAATGTTGAGGGTCCTCAATTGATTGTGGTATATATGATAGGACTAATGTAAAGTGTGCATAATGTTGCACGGAATTTTACACTATCACATCATCTAAGATTAAGATTTAGTCTATAGAGGTATATAAGTTCAATCCTAACAGAAAAACTAAGATATGATGTATTAGGTAGAAATGCCAATATATCATTGTGTTTTTTTGTGTCATTTATCATTCAGTGATGTTTTCATTGGAAATTTGTTGTTTTAGCGGAAGAAGAGGAGGAGGAGACACACGCGGGAGCAGAACTTGTATTTACAG</genome_strand>
        <mrna_strand>TTTGCTAGTGATGTTGACATCATCACCTTCGCCGGCCGTCGCATTCCGGCACATTCTAACGTTCTG.............................................................................................................................................................................................................................GCTGCTGCTTCGACGGTTCTGGAGAGCGTATTAGTTTGTCAACAGCGGAGTTTTGAGAAAAAGATACAGATTCTGGGCGTCCCCTGCGGCTCAGTTTACGTGTTCGTACAATTTCTCTATTCCTTCAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTACTAAAGATCAGATGGAGAAACATGGTATTCATCTACTAGCACTTTCTCATGTGTACTTAGTACCATGCCTAAAACACAGATGCACCAAAGCATTGGCTGAGCAATTGACAATTGAAAACGTCATAGACATGATTCAACTCGCGAGGCTATGTGATGCACCTCATCTCTATCTCAAATGTATGAAATTTTTGCGGAGTAATTTCAGCAAAGTTAAAAAAACTGAAGGCTGGAAGTTCCTTCAACGTCATGATCCCCTGCTTGAACTTGAAATTTTACAGTTCACTGATGAAGCCGAGTTG.......................................................................................................................................................................................................................................................................................................................................CGGAAGAAGAGGAGGAGGAGACACACGCGGGAGCAGAACTTGTATTTACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0127C05-mUEoa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U341418" ref_strand="+" ref_description="SGN-U341418        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | speckle-type POZ protein-related, contains Pfam PF00651 : BTB/POZ domain; contains Pfam PF02135 : TAZ zinc finger; similar to Speckle-type POZ protein (SP:O43791) (Homo sapiens) | chr5:25350491-25352709 REVERSE | Aliases: MDC12.13, MDC12_13(evalue: 1e-37, score=153) genbank/nr: hypothetical(evalue: 2e-36, score=155)">
      <seq>gaggaggagacacacgcgggagcagaacttgtatttacagttaagtgaagggatggattgtttggagcatatatgcagggaagggtgtacgagcgtagggccatatgacgaagagtactcttgccaaaagaagttgccatgtagcaagtttgatacatgccaaggtctccagcttttgattacacatttctctacttgtaagaaaagagtaaagggaagttgttcacaatgcaagcgaatgtggcagctcctaaggttacacgcatcgatttgtgaccaacctgatgattgtcgagttcctctttgcaggtatggccaccactatatttacttgtacctatatgtcattttccgccattgcagttgtgatttagtcagtacgtaggaaggttatatacaatgcacatacatttgtgatgtggctgaaacattatcacgaggaattaagatctcttgcccacttacagtcaagatagttcttgatgtgagcgcgacccaatcatgatctaagtagtgatagttgacttgacacacggttggttctatatcgactagatcgtagaaaatagtgtaacctttttctgaaatattcatttggatcatttatttctagttgaaaaatctctgtttttcccctgttcctagtgaaaatatcttcaaactgtcctaataatcttttaacacgttggattgaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0127C05-mUEoa/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06SLm0127C05.1" temp_strand="+" temp_description="C06SLm0127C05.1  AC226020.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0127C05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="90478" stop="91774"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90778" g_stop="91474" g_length="697"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="697" r_length="697" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0127C05.1" gen_strand="+" ref_id="SGN-U341418" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>697</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0127C05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U341418" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90778" e_stop="91474"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGAGGAGACACACGCGGGAGCAGAACTTGTATTTACAGTTAAGTGAAGGGATGGATTGTTTGGAGCATATATGCAGGGAAGGGTGTACGAGCGTAGGGCCATATGACGAAGAGTACTCTTGCCAAAAGAAGTTGCCATGTAGCAAGTTTGATACATGCCAAGGTCTCCAGCTTTTGATTACACATTTCTCTACTTGTAAGAAAAGAGTAAAGGGAAGTTGTTCACAATGCAAGCGAATGTGGCAGCTCCTAAGGTTACACGCATCGATTTGTGACCAACCTGATGATTGTCGAGTTCCTCTTTGCAGGTATGGCCACCACTATATTTACTTGTACCTATATGTCATTTTCCGCCATTGCAGTTGTGATTTAGTCAGTACGTAGGAAGGTTATATACAATGCACATACATTTGTGATGTGGCTGAAACATTATCACGAGGAATTAAGATCTCTTGCCCACTTACAGTCAAGATAGTTCTTGATGTGAGCGCGACCCAATCATGATCTAAGTAGTGATAGTTGACTTGACACACGGTTGGTTCTATATCGACTAGATCGTAGAAAATAGTGTAACCTTTTTCTGAAATATTCATTTGGATCATTTATTTCTAGTTGAAAAATCTCTGTTTTCCCCCTGTTCCTAGTGAAAATATCTTCAAACTGTCCTAATAATCTTTTAACACGTTGGATTGAATA</genome_strand>
        <mrna_strand>GAGGAGGAGACACACGCGGGAGCAGAACTTGTATTTACAGTTAAGTGAAGGGATGGATTGTTTGGAGCATATATGCAGGGAAGGGTGTACGAGCGTAGGGCCATATGACGAAGAGTACTCTTGCCAAAAGAAGTTGCCATGTAGCAAGTTTGATACATGCCAAGGTCTCCAGCTTTTGATTACACATTTCTCTACTTGTAAGAAAAGAGTAAAGGGAAGTTGTTCACAATGCAAGCGAATGTGGCAGCTCCTAAGGTTACACGCATCGATTTGTGACCAACCTGATGATTGTCGAGTTCCTCTTTGCAGGTATGGCCACCACTATATTTACTTGTACCTATATGTCATTTTCCGCCATTGCAGTTGTGATTTAGTCAGTACGTAGGAAGGTTATATACAATGCACATACATTTGTGATGTGGCTGAAACATTATCACGAGGAATTAAGATCTCTTGCCCACTTACAGTCAAGATAGTTCTTGATGTGAGCGCGACCCAATCATGATCTAAGTAGTGATAGTTGACTTGACACACGGTTGGTTCTATATCGACTAGATCGTAGAAAATAGTGTAACCTTTTTCTGAAATATTCATTTGGATCATTTATTTCTAGTTGAAAAATCTCTGTTTTTCCCCTGTTCCTAGTGAAAATATCTTCAAACTGTCCTAATAATCTTTTAACACGTTGGATTGAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0127C05-mUEoa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U315867" ref_strand="+" ref_description="SGN-U315867        Tomato 200607 #1 [31 ESTs aligned] arabidopsis/peptide: | Symbol: None | speckle-type POZ protein-related, contains Pfam PF00651 : BTB/POZ domain; contains Pfam PF02135 : TAZ zinc finger; similar to Speckle-type POZ protein (SP:O43791) (Homo sapiens) | chr5:25350491-25352709 REVERSE | Aliases: MDC12.13, MDC12_13(evalue: 1e-116, score=416) genbank/nr: gi|36955895|gb|AAQ87004.1| BTB and TAZ domain protein 1 [Arabidopsis thaliana] >gi|38603810|gb|AAR24650.1| At5g63160 [Arabidopsis thaliana] >gi|10177297|dbj|BAB10558.1| unnamed protein product [Arabidopsis thaliana] >gi|15242656|ref|NP_201121.1| speckle-type POZ  protein-related [Arabidopsis thaliana] (evalue: 1e-114, score=416)">
      <seq>gcaaatggcaactctgcgctgcttataaatagagagggttgggttaatgccttcttcaaaaactaaactctctgaaaattcccaaaagcaactgtaatcactatgtcatcccttaacttttcagacggtatcgataaattttccggcgaaatgtctgaggttgatatccaaatcgtcacctccggcggcctccgcattccggcacattccgccgttctggctgctgcttcgacggttctggagaacatactagctcggccgggaaagcggcggagctccgagagaacgattcggattcttggcgtgccgtgcgacgccgtttccgtgtttatccggtttctctattctttcaagtgcactgaagagcagatgaagagacatgggatccatctgctagcactttctcatgtgtacttggtaccgcagctgaaacagagatgcacaaaggggttggccgagcgattgacgattgagaatgctgtggatttgcttcaacttgcgagactatgtgatgcaccagatctatatcttaagagtatgaaatttttgtctagtaatttcaagaaagttgaggagactgagggctggaaattccttcaacatcatgatccctggcttgaacttgaaattctacagttcatggatgaggctgagttgcggaagaagaggacaaggagacacaaactagagcggagcttgtatttacagctaagcgaagcgatggattgtttggagcacatttgcactgaaggatgtactagtgtggggccattagataaagaaccttccatcaagaggcagccatgtagcaagtttgatacctgccaagggcttcagtttctgattcgacattttgctacttgtaagagaaggaccaatggaggttgtttgcgatgcaagcgcatgtggcagatcctaagattacacgcatccatttgtgaccaaccaaacgattgccaggttcccctttgcagacaattcaaattgaaggtgcaacaaaagggtgatgacgagctgtggaaatcacttgttagaaaggtagtgtcagccagggcaatgtcttctttatctctgcccaaaagaaagagagaagaggaaccgaaaatggactttaaccatcatcaagtgatgaacttcagattggcagcttagtgtcaaaagtgtgtttcatatcgtaaggcgaactcgatctttgtaaatagaccatcaatagaatgtaatttagtttttaccatttcatatttcctactgtagagacctattctatatgtttatttattatttctgagtcagtcttttagtagatgaagagtgttgtatcagcaaaagagttgtatacaaaaagagtaattctacaactactgtgtggtagtctctgtatatatatcttcattttgtgtaataaaattagccaactatatgcttcatataaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0127C05-mUEoa/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06SLm0127C05.1" temp_strand="+" temp_description="C06SLm0127C05.1  AC226020.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0127C05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="94150" stop="98220"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94450" g_stop="94668" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="219" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94669" i_stop="94873" i_length="205">
            <donor d_prob="0.895" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94874" g_stop="95007" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="353" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95008" i_stop="95705" i_length="698">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.926" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95706" g_stop="96009" g_length="304"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="657" r_length="304" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96010" i_stop="96223" i_length="214">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="96224" g_stop="96540" g_length="317"/>
          <reference_exon_boundary r_type="cDNA" r_start="658" r_stop="974" r_length="317" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="96541" i_stop="97461" i_length="921">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.679" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="97462" g_stop="97915" g_length="454"/>
          <reference_exon_boundary r_type="cDNA" r_start="975" r_stop="1426" r_length="452" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1431" polyA_stop="1481"/>
      <MATCH_line gen_id="C06SLm0127C05.1" gen_strand="+" ref_id="SGN-U315867" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1428</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0127C05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U315867" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94450" e_stop="94668"/>
          <exon e_start="94874" e_stop="95007"/>
          <exon e_start="95706" e_stop="96009"/>
          <exon e_start="96224" e_stop="96540"/>
          <exon e_start="97462" e_stop="97915"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAATGGCAACTCTGCGCTGCTTATAAATAGAGAGGGTTGGGTTAATGCCTTCTTCAAAAACTAAACTCTCTGAAAATTCCCAAAAGCAACTGTAATCACTATGTCATCCCTTAACTTTTCAGACGGTATCGATAAATTTTCCGGCGAAATGTCTGAGGTTGATATCCAAATCGTCACCTCCGGCGGCCTCCGCATTCCGGCACATTCCGCCGTTCTGGTACGAAGACCTAAAACTAACCACATGAAGTCTTAAATACTCGTTAAATCTATTAATTGCATGTTAATCTAATGTTAGTCTAGTGTATTAATGATTTATAATCAATTCACGCTGTGAAAACTCCGTGTTGGCTGTTCGAAAAATTGATATTAGTTGCGAATGATTTTGAGAAAAAAGTACTGATTTATGAGAAACGTATTTGTAGGCTGCTGCTTCGACGGTTCTGGAGAACATACTAGCTCGGCCGGGAAAGCGGCGGAGCTCCGAGAGAACGATTCGGATTCTTGGCGTGCCGTGCGACGCCGTTTCCGTGTTTATCCGGTTTCTCTATTCTTTCAAGTGAGTACACGAGATACACGCAAATCCGTTTAGTTTTTTTTAATTATTATTATTTTTTAATTAATTTGGTAACCGTGTTCAAACTTCGAATCTAATTGGCTCCATCAAGCTGGAATTTGACCGCGAGAAGTAATTATTTTAAAGTAGATTATTTTAGGATTAAGTCTCGGTTGCTTCGTTGATTAGAAAATAGGTAGTTGGTATTCAAAGACTCATTATTTGATTTTTCTTAATTTGTAAATTGTTTTGAAACTCGAATCTAATTGGTTCCATCCAAGCTGGAATTTGACCACAATAAGTAGATTATTTTAGGGTGAAGTCTCGGTTCCTTCGTTGATCAGAGAATAGGTGGTTGATATTCAAAAACTAATCTGCATGCCTATTACTTAATTGCTTACGTGTGGTTCATTCATTGACTTGTAAATTCTTTAATCATATACTATTTGATGTTTTGATTGCTTCATATTGTGTTGGCCGCCTGCTAGATGCCTCGACCGACATCTTCGTTGTCATTGAAATGAATTACAAAAGGATTTAGGTTATTTATGATCGTTAAACAACCAATATTGTTGACTCATTTGTAGCATGTTACTTACTCTCATATGGTCTAAAAGCTAATTAAAATATAAGAAACTTTTAATCAGTTAAATCCTTGCTAGAAAGAATGCTTAGAGTGACCAAATTGTCATTGTATTTAGGTGCACTGAAGAGCAGATGAAGAGACATGGGATCCATCTGCTAGCACTTTCTCATGTGTACTTGGTACCGCAGCTGAAACAGAGATGCACAAAGGGGTTGGCCGAGCGATTGACGATTGAGAATGCTGTGGATTTGCTTCAACTTGCGAGACTATGTGATGCACCAGATCTATATCTTAAGAGTATGAAATTTTTGTCTAGTAATTTCAAGAAAGTTGAGGAGACTGAGGGCTGGAAATTCCTTCAACATCATGATCCCTGGCTTGAACTTGAAATTCTACAGTTCATGGATGAGGCTGAGTTGGTACGTAATTATAACGTAATTGACATATATCATACATCCCTTATTTAATAAAAGAATTTCTCTTGGAATTCATGTTATAATTTTTATTGTTGTCAAATTGATCATGACAGATAATAAGCTTGCCATGAAATCATTACATGGCATTTGTTTGCATCTCCTTTATCAGTCAAATGGCTGTGGTTAGTGATTTTACATTGTAAATTTCTCATTATAGCGGAAGAAGAGGACAAGGAGACACAAACTAGAGCGGAGCTTGTATTTACAGCTAAGCGAAGCGATGGATTGTTTGGAGCACATTTGCACTGAAGGATGTACTAGTGTGGGGCCATTAGATAAAGAACCTTCCATCAAGAGGCAGCCATGTAGCAAGTTTGATACCTGCCAAGGGCTTCAGTTTCTGATTCGACATTTTGCTACTTGTAAGAGAAGGACCAATGGAGGTTGTTTGCGATGCAAGCGCATGTGGCAGATCCTAAGATTACACGCATCCATTTGTGACCAACCAAACGATTGCCAGGTTCCCCTTTGCAGGTAACCACCAACTGACTACTGAGTAACTAATTTTTTAATCAATTCATGTATTGTTGATCGCGCAAGAGTGAATCACATTGATCGCACTAATTAGAATATGTACATCATCTTAGAGGTGTCATTGGTTGAGGCATGTCTATCTTGCTTAATTTGAATGATGGGTCCTGATCCATATACCCATTATGGTCTGTCATGTTCAATCTTGAAAACTTCTTAGGTGGCATGTCAGAGCTCAGATGTTATTATAGGTGATTTGTCTCGATAGAAGAAGCCAACAAATCAGCTGTCTTATTGATTTGTCATGTTTTTCTCCGATTCATGATTGAGCCATTTACTATCACTTTGTTGGATGTTTCTCTTTAAATTTGTGATGTAGACAGTTACAAGGAGGCTATCAATCCTGAACTGTCTTATAAGCTAGTGAAGATAAATCAACACTTAGTTACGGCTTACACAAAATTATTGTCAGCTGGGATGTGATTTTGTTCAATTTTGTGTGATGATTAGTCTAATCATGAAGATATTTTCTCCAAATTTCACTGTATGCCGGCATGGTTGAGATTGTTGTTGATGTGAAACACAACCATCCAAGTAGTAATAATTGATCCGTGGTCCCATTTCGACTAATACCCAGATGCACCTGTCGTAGACGGTATCAAAATGTAGACAGCGACAGGATTTTCTCCATTTGTCCAGTTCCTCAAGAAAATATCTCCCATGATTTCGAATAACTTTTTAACACGTTGGGTTGGTTAAGGTCAAAATCGCTTCATAACTATCAAGCTTAAAAAGAACATGTTTGCCTTCTTTATCAGTAGGGGTCAATTTGAAACAGTAACTAATCGTCCTCTTTTTCTTTTTTTCTGTTCTTGGTCAATATCGACTCTCGAGTATCTTACAGCCCCATATTTTACATTTCAGACAATTCAAATTGAAGGTGCAACAAAAGGGTGATGACGAGCTGTGGAAATCACTTGTTAGAAAGGTAGTGTCAGCCAGGGCAATGTCTTCTTTATCTCTGCCCAAAAGAAAGAGAGAAGAGGAACCGAAAATGGACTTTAACCATCATCAAGTGATGAACTTCAGATTGGCAGCTTAGTGTCAAAAGTGTGTGTTTCATATCGTAAGGCGAACTCGATCTTTGTAAATAGACCATCAATAGAATGTAATTTAGTTTTTACCATTTCATATTTCCTACTGTAGAGACCTATTCTATATGTTTATTTATTATTTCTGAGTCAGTCTTTTAGTAGATGAAGAGTGTTGTATCAGCAAAAGAGTTGTATACAAAAAGAGTAATTCTACAACTACTGTGTGGTAGTCTCTGTATATATATCTTCATTTTGTGTAATAAAATTAGCCAACTATATGCTTC</genome_strand>
        <mrna_strand>GCAAATGGCAACTCTGCGCTGCTTATAAATAGAGAGGGTTGGGTTAATGCCTTCTTCAAAAACTAAACTCTCTGAAAATTCCCAAAAGCAACTGTAATCACTATGTCATCCCTTAACTTTTCAGACGGTATCGATAAATTTTCCGGCGAAATGTCTGAGGTTGATATCCAAATCGTCACCTCCGGCGGCCTCCGCATTCCGGCACATTCCGCCGTTCTG.............................................................................................................................................................................................................GCTGCTGCTTCGACGGTTCTGGAGAACATACTAGCTCGGCCGGGAAAGCGGCGGAGCTCCGAGAGAACGATTCGGATTCTTGGCGTGCCGTGCGACGCCGTTTCCGTGTTTATCCGGTTTCTCTATTCTTTCAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCACTGAAGAGCAGATGAAGAGACATGGGATCCATCTGCTAGCACTTTCTCATGTGTACTTGGTACCGCAGCTGAAACAGAGATGCACAAAGGGGTTGGCCGAGCGATTGACGATTGAGAATGCTGTGGATTTGCTTCAACTTGCGAGACTATGTGATGCACCAGATCTATATCTTAAGAGTATGAAATTTTTGTCTAGTAATTTCAAGAAAGTTGAGGAGACTGAGGGCTGGAAATTCCTTCAACATCATGATCCCTGGCTTGAACTTGAAATTCTACAGTTCATGGATGAGGCTGAGTTG......................................................................................................................................................................................................................CGGAAGAAGAGGACAAGGAGACACAAACTAGAGCGGAGCTTGTATTTACAGCTAAGCGAAGCGATGGATTGTTTGGAGCACATTTGCACTGAAGGATGTACTAGTGTGGGGCCATTAGATAAAGAACCTTCCATCAAGAGGCAGCCATGTAGCAAGTTTGATACCTGCCAAGGGCTTCAGTTTCTGATTCGACATTTTGCTACTTGTAAGAGAAGGACCAATGGAGGTTGTTTGCGATGCAAGCGCATGTGGCAGATCCTAAGATTACACGCATCCATTTGTGACCAACCAAACGATTGCCAGGTTCCCCTTTGCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAATTCAAATTGAAGGTGCAACAAAAGGGTGATGACGAGCTGTGGAAATCACTTGTTAGAAAGGTAGTGTCAGCCAGGGCAATGTCTTCTTTATCTCTGCCCAAAAGAAAGAGAGAAGAGGAACCGAAAATGGACTTTAACCATCATCAAGTGATGAACTTCAGATTGGCAGCTTAGTGTCAAAA--GTGTGTTTCATATCGTAAGGCGAACTCGATCTTTGTAAATAGACCATCAATAGAATGTAATTTAGTTTTTACCATTTCATATTTCCTACTGTAGAGACCTATTCTATATGTTTATTTATTATTTCTGAGTCAGTCTTTTAGTAGATGAAGAGTGTTGTATCAGCAAAAGAGTTGTATACAAAAAGAGTAATTCTACAACTACTGTGTGGTAGTCTCTGTATATATATCTTCATTTTGTGTAATAAAATTAGCCAACTATATGCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0127C05-mUEoa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U315866" ref_strand="+" ref_description="SGN-U315866        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | speckle-type POZ protein-related, contains Pfam PF00651 : BTB/POZ domain; similar to Speckle-type POZ protein (SP:O43791) (Homo sapiens) | chr3:17919177-17921509 REVERSE | Aliases: T29H11.120(evalue: 3e-90, score=310) genbank/nr: gi|36955903|gb|AAQ87005.1| BTB and TAZ domain protein 2 [Arabidopsis thaliana] >gi|23397078|gb|AAN31824.1| unknown protein [Arabidopsis thaliana] >gi|19310817|gb|AAL85139.1| unknown protein [Arabidopsis thaliana] >gi|14532782|gb|AAK64172.1| unknown protein [Arabidopsis thaliana] >gi|18408618|ref|NP_566902.1| speckle-type POZ  protein-related [Arabidopsis thaliana] (evalue: 3e-88, score=310)">
      <seq>gaaaattcccaaaagcaactgtaatcactatgtcatcccttaacttttcagacggtatcgataaattttccggcgaaatgtctgaggttgatatccaaatcgtcacctccggcggcctccgcattccggcacattccgccgttctggctgctgcttcgacggttctggagaacgattcggattcttggcgtgccgtgcgacgccgtttccgtgtttatccggtttctctattctttcaagtgcactgaagagcagatgaagaaacagagatgcacaaaggggttggccgagcgattgacgattgagaatgctgtggatttgcttcaacttgcgagactatgtgatgcaccagatctatatcttaagagtatgaaatttttgtctagtaatttcaagaaagttgaggagactgagggctggaaattccttcaacatcatgatccctggcttgaacttgaaattctacagttcatggatgaggctgagttgcggaagaagaggacaaggagacacaaactagagcggagcttgtatttacagctaagcgaagcgatggattgtttggagcacatttgcactgaaggatgtactagtgtggggccattagataaagaaccttccatcaagaggcagccatgtagcaagtttgatacctgccaagggcttcagtttctgattcgacattttgctacttgtaagagaaggaccaatggaggttgtttgcgatgcaagcgcatgtggcagatcctaagattacacgcatccatttgtgaccaaccaaacgattgccaggttcccctttgcagacaattcaaattgaaggtgcaacaaaagggtgatgacgagctgtggaaatcacttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0127C05-mUEoa/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06SLm0127C05.1" temp_strand="+" temp_description="C06SLm0127C05.1  AC226020.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0127C05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="94223" stop="97817"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94523" g_stop="94668" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="146" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94669" i_stop="94914" i_length="246">
            <donor d_prob="0.895" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.74"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94915" g_stop="95007" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="239" r_length="93" r_score="0.860"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95008" i_stop="95705" i_length="698">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.926" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95706" g_stop="95724" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="258" r_length="19" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="95725" i_stop="95778" i_length="54">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.079" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95779" g_stop="96009" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="489" r_length="231" r_score="0.991"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="96010" i_stop="96223" i_length="214">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="96224" g_stop="96540" g_length="317"/>
          <reference_exon_boundary r_type="cDNA" r_start="490" r_stop="806" r_length="317" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="96541" i_stop="97461" i_length="921">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.679" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="97462" g_stop="97517" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="807" r_stop="862" r_length="56" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0127C05.1" gen_strand="+" ref_id="SGN-U315866" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>862</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0127C05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U315866" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94523" e_stop="94668"/>
          <exon e_start="94915" e_stop="95007"/>
          <exon e_start="95706" e_stop="95724"/>
          <exon e_start="95779" e_stop="96009"/>
          <exon e_start="96224" e_stop="96540"/>
          <exon e_start="97462" e_stop="97517"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAATTCCCAAAAGCAACTGTAATCACTATGTCATCCCTTAACTTTTCAGACGGTATCGATAAATTTTCCGGCGAAATGTCTGAGGTTGATATCCAAATCGTCACCTCCGGCGGCCTCCGCATTCCGGCACATTCCGCCGTTCTGGTACGAAGACCTAAAACTAACCACATGAAGTCTTAAATACTCGTTAAATCTATTAATTGCATGTTAATCTAATGTTAGTCTAGTGTATTAATGATTTATAATCAATTCACGCTGTGAAAACTCCGTGTTGGCTGTTCGAAAAATTGATATTAGTTGCGAATGATTTTGAGAAAAAAGTACTGATTTATGAGAAACGTATTTGTAGGCTGCTGCTTCGACGGTTCTGGAGAACATACTAGCTCGGCCGGGAAAGCGGCGGAGCTCCGAGAGAACGATTCGGATTCTTGGCGTGCCGTGCGACGCCGTTTCCGTGTTTATCCGGTTTCTCTATTCTTTCAAGTGAGTACACGAGATACACGCAAATCCGTTTAGTTTTTTTTAATTATTATTATTTTTTAATTAATTTGGTAACCGTGTTCAAACTTCGAATCTAATTGGCTCCATCAAGCTGGAATTTGACCGCGAGAAGTAATTATTTTAAAGTAGATTATTTTAGGATTAAGTCTCGGTTGCTTCGTTGATTAGAAAATAGGTAGTTGGTATTCAAAGACTCATTATTTGATTTTTCTTAATTTGTAAATTGTTTTGAAACTCGAATCTAATTGGTTCCATCCAAGCTGGAATTTGACCACAATAAGTAGATTATTTTAGGGTGAAGTCTCGGTTCCTTCGTTGATCAGAGAATAGGTGGTTGATATTCAAAAACTAATCTGCATGCCTATTACTTAATTGCTTACGTGTGGTTCATTCATTGACTTGTAAATTCTTTAATCATATACTATTTGATGTTTTGATTGCTTCATATTGTGTTGGCCGCCTGCTAGATGCCTCGACCGACATCTTCGTTGTCATTGAAATGAATTACAAAAGGATTTAGGTTATTTATGATCGTTAAACAACCAATATTGTTGACTCATTTGTAGCATGTTACTTACTCTCATATGGTCTAAAAGCTAATTAAAATATAAGAAACTTTTAATCAGTTAAATCCTTGCTAGAAAGAATGCTTAGAGTGACCAAATTGTCATTGTATTTAGGTGCACTGAAGAGCAGATGAAGAGACATGGGATCCATCTGCTAGCACTTTCTCATGTGTACTTGGTACCGCAGCTGAAACAGAGATGCACAAAGGGGTTGGCCGAGCGATTGACGATTGAGAATGCTGTGGATTTGCTTCAACTTGCGAGACTATGTGATGCACCAGATCTATATCTTAAGAGTATGAAATTTTTGTCTAGTAATTTCAAGAAAGTTGAGGAGACTGAGGGCTGGAAATTCCTTCAACATCATGATCCCTGGCTTGAACTTGAAATTCTACAGTTCATGGATGAGGCTGAGTTGGTACGTAATTATAACGTAATTGACATATATCATACATCCCTTATTTAATAAAAGAATTTCTCTTGGAATTCATGTTATAATTTTTATTGTTGTCAAATTGATCATGACAGATAATAAGCTTGCCATGAAATCATTACATGGCATTTGTTTGCATCTCCTTTATCAGTCAAATGGCTGTGGTTAGTGATTTTACATTGTAAATTTCTCATTATAGCGGAAGAAGAGGACAAGGAGACACAAACTAGAGCGGAGCTTGTATTTACAGCTAAGCGAAGCGATGGATTGTTTGGAGCACATTTGCACTGAAGGATGTACTAGTGTGGGGCCATTAGATAAAGAACCTTCCATCAAGAGGCAGCCATGTAGCAAGTTTGATACCTGCCAAGGGCTTCAGTTTCTGATTCGACATTTTGCTACTTGTAAGAGAAGGACCAATGGAGGTTGTTTGCGATGCAAGCGCATGTGGCAGATCCTAAGATTACACGCATCCATTTGTGACCAACCAAACGATTGCCAGGTTCCCCTTTGCAGGTAACCACCAACTGACTACTGAGTAACTAATTTTTTAATCAATTCATGTATTGTTGATCGCGCAAGAGTGAATCACATTGATCGCACTAATTAGAATATGTACATCATCTTAGAGGTGTCATTGGTTGAGGCATGTCTATCTTGCTTAATTTGAATGATGGGTCCTGATCCATATACCCATTATGGTCTGTCATGTTCAATCTTGAAAACTTCTTAGGTGGCATGTCAGAGCTCAGATGTTATTATAGGTGATTTGTCTCGATAGAAGAAGCCAACAAATCAGCTGTCTTATTGATTTGTCATGTTTTTCTCCGATTCATGATTGAGCCATTTACTATCACTTTGTTGGATGTTTCTCTTTAAATTTGTGATGTAGACAGTTACAAGGAGGCTATCAATCCTGAACTGTCTTATAAGCTAGTGAAGATAAATCAACACTTAGTTACGGCTTACACAAAATTATTGTCAGCTGGGATGTGATTTTGTTCAATTTTGTGTGATGATTAGTCTAATCATGAAGATATTTTCTCCAAATTTCACTGTATGCCGGCATGGTTGAGATTGTTGTTGATGTGAAACACAACCATCCAAGTAGTAATAATTGATCCGTGGTCCCATTTCGACTAATACCCAGATGCACCTGTCGTAGACGGTATCAAAATGTAGACAGCGACAGGATTTTCTCCATTTGTCCAGTTCCTCAAGAAAATATCTCCCATGATTTCGAATAACTTTTTAACACGTTGGGTTGGTTAAGGTCAAAATCGCTTCATAACTATCAAGCTTAAAAAGAACATGTTTGCCTTCTTTATCAGTAGGGGTCAATTTGAAACAGTAACTAATCGTCCTCTTTTTCTTTTTTTCTGTTCTTGGTCAATATCGACTCTCGAGTATCTTACAGCCCCATATTTTACATTTCAGACAATTCAAATTGAAGGTGCAACAAAAGGGTGATGACGAGCTGTGGAAATCACTTG</genome_strand>
        <mrna_strand>GAAAATTCCCAAAAGCAACTGTAATCACTATGTCATCCCTTAACTTTTCAGACGGTATCGATAAATTTTCCGGCGAAATGTCTGAGGTTGATATCCAAATCGTCACCTCCGGCGGCCTCCGCATTCCGGCACATTCCGCCGTTCTG......................................................................................................................................................................................................................................................GCTGCTGCTTCGACGGTTCTGGAGAACGATTCGGATTCTTGGCGTGCCGTGCGACGCCGTTTCCGTGTTTATCCGGTTTCTCTATTCTTTCAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCACTGAAGAGCAGATG......................................................AAGAAACAGAGATGCACAAAGGGGTTGGCCGAGCGATTGACGATTGAGAATGCTGTGGATTTGCTTCAACTTGCGAGACTATGTGATGCACCAGATCTATATCTTAAGAGTATGAAATTTTTGTCTAGTAATTTCAAGAAAGTTGAGGAGACTGAGGGCTGGAAATTCCTTCAACATCATGATCCCTGGCTTGAACTTGAAATTCTACAGTTCATGGATGAGGCTGAGTTG......................................................................................................................................................................................................................CGGAAGAAGAGGACAAGGAGACACAAACTAGAGCGGAGCTTGTATTTACAGCTAAGCGAAGCGATGGATTGTTTGGAGCACATTTGCACTGAAGGATGTACTAGTGTGGGGCCATTAGATAAAGAACCTTCCATCAAGAGGCAGCCATGTAGCAAGTTTGATACCTGCCAAGGGCTTCAGTTTCTGATTCGACATTTTGCTACTTGTAAGAGAAGGACCAATGGAGGTTGTTTGCGATGCAAGCGCATGTGGCAGATCCTAAGATTACACGCATCCATTTGTGACCAACCAAACGATTGCCAGGTTCCCCTTTGCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAATTCAAATTGAAGGTGCAACAAAAGGGTGATGACGAGCTGTGGAAATCACTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0127C05-mUEoa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335369" ref_strand="+" ref_description="SGN-U335369        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | speckle-type POZ protein-related, contains Pfam PF00651 : BTB/POZ domain; contains Pfam PF02135 : TAZ zinc finger; similar to Speckle-type POZ protein (SP:O43791) (Homo sapiens) | chr5:25350491-25352709 REVERSE | Aliases: MDC12.13, MDC12_13(evalue: 5e-100, score=361) genbank/nr: hypothetical(evalue: 2e-99, score=365)">
      <seq>gtaatcactatgtcatcccttaacttttcagacggtatcgataaattttccggcgaaatgtctgaggttgatatccaaatcgtcacctccggcggcctccgcattccggcacattccgccgttctggctgctgcttcgacggttctggagaacatactagctcggccgggaaagcggcggagctccgagagaacgattcggattcttggcgtgtttatccggtttctctattctttcaagtgcactgaagagcagatgaagagacatgggatccatctgctagcactttctcatgtgtacttggtaccgcagctgaaacagagatgcacaaaggggttggccgagcgattgacgattgagaatgctgtggatttgcttcaacttgcgagactatgtgatgcaccagatctatatcttaagagtatgaaatttttgtctagtaatttcaagaaagttgaggagactgagggctggaaattccttcaacatcatgatccctggcttgaacttgaaattctacagttcatggatgaggctgagttgcggaagaagaggacaaggagacacaaactagagcggagcttgtatttacagctaagcgaagcgatggattgtttggagcacatttgcactgaaggatgtactagtgtggggccattagataaagaaccttccatcaagaggcagccatgtagcaagtttgatacctgccaagggcttcagtttctgattcgacattttgctacttgtaagagaaggaccaatggaggttgtttgcgatgcaagcgcatgtggcagatcctaagattacacgcatccatttgtgaccaaccaaacgattgccagggtccccctttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0127C05-mUEoa/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06SLm0127C05.1" temp_strand="+" temp_description="C06SLm0127C05.1  AC226020.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0127C05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="94243" stop="96838"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94543" g_stop="94668" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="126" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94669" i_stop="94873" i_length="205">
            <donor d_prob="0.895" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94874" g_stop="94962" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="215" r_length="89" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94963" i_stop="95681" i_length="719">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.76"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95682" g_stop="96009" g_length="328"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="543" r_length="328" r_score="0.963"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96010" i_stop="96223" i_length="214">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="96224" g_stop="96536" g_length="313"/>
          <reference_exon_boundary r_type="cDNA" r_start="544" r_stop="856" r_length="313" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0127C05.1" gen_strand="+" ref_id="SGN-U335369" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>856</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0127C05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U335369" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94543" e_stop="94668"/>
          <exon e_start="94874" e_stop="94962"/>
          <exon e_start="95682" e_stop="96009"/>
          <exon e_start="96224" e_stop="96536"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAATCACTATGTCATCCCTTAACTTTTCAGACGGTATCGATAAATTTTCCGGCGAAATGTCTGAGGTTGATATCCAAATCGTCACCTCCGGCGGCCTCCGCATTCCGGCACATTCCGCCGTTCTGGTACGAAGACCTAAAACTAACCACATGAAGTCTTAAATACTCGTTAAATCTATTAATTGCATGTTAATCTAATGTTAGTCTAGTGTATTAATGATTTATAATCAATTCACGCTGTGAAAACTCCGTGTTGGCTGTTCGAAAAATTGATATTAGTTGCGAATGATTTTGAGAAAAAAGTACTGATTTATGAGAAACGTATTTGTAGGCTGCTGCTTCGACGGTTCTGGAGAACATACTAGCTCGGCCGGGAAAGCGGCGGAGCTCCGAGAGAACGATTCGGATTCTTGGCGTGCCGTGCGACGCCGTTTCCGTGTTTATCCGGTTTCTCTATTCTTTCAAGTGAGTACACGAGATACACGCAAATCCGTTTAGTTTTTTTTAATTATTATTATTTTTTAATTAATTTGGTAACCGTGTTCAAACTTCGAATCTAATTGGCTCCATCAAGCTGGAATTTGACCGCGAGAAGTAATTATTTTAAAGTAGATTATTTTAGGATTAAGTCTCGGTTGCTTCGTTGATTAGAAAATAGGTAGTTGGTATTCAAAGACTCATTATTTGATTTTTCTTAATTTGTAAATTGTTTTGAAACTCGAATCTAATTGGTTCCATCCAAGCTGGAATTTGACCACAATAAGTAGATTATTTTAGGGTGAAGTCTCGGTTCCTTCGTTGATCAGAGAATAGGTGGTTGATATTCAAAAACTAATCTGCATGCCTATTACTTAATTGCTTACGTGTGGTTCATTCATTGACTTGTAAATTCTTTAATCATATACTATTTGATGTTTTGATTGCTTCATATTGTGTTGGCCGCCTGCTAGATGCCTCGACCGACATCTTCGTTGTCATTGAAATGAATTACAAAAGGATTTAGGTTATTTATGATCGTTAAACAACCAATATTGTTGACTCATTTGTAGCATGTTACTTACTCTCATATGGTCTAAAAGCTAATTAAAATATAAGAAACTTTTAATCAGTTAAATCCTTGCTAGAAAGAATGCTTAGAGTGACCAAATTGTC-ATTGTATTTAGGTGCACTGAAGAGCAGATGAAGAGACATGGGATCCATCTGCTAGCACTTTCTCATGTGTACTTGGTACCGCAGCTGAAACAGAGATGCACAAAGGGGTTGGCCGAGCGATTGACGATTGAGAATGCTGTGGATTTGCTTCAACTTGCGAGACTATGTGATGCACCAGATCTATATCTTAAGAGTATGAAATTTTTGTCTAGTAATTTCAAGAAAGTTGAGGAGACTGAGGGCTGGAAATTCCTTCAACATCATGATCCCTGGCTTGAACTTGAAATTCTACAGTTCATGGATGAGGCTGAGTTGGTACGTAATTATAACGTAATTGACATATATCATACATCCCTTATTTAATAAAAGAATTTCTCTTGGAATTCATGTTATAATTTTTATTGTTGTCAAATTGATCATGACAGATAATAAGCTTGCCATGAAATCATTACATGGCATTTGTTTGCATCTCCTTTATCAGTCAAATGGCTGTGGTTAGTGATTTTACATTGTAAATTTCTCATTATAGCGGAAGAAGAGGACAAGGAGACACAAACTAGAGCGGAGCTTGTATTTACAGCTAAGCGAAGCGATGGATTGTTTGGAGCACATTTGCACTGAAGGATGTACTAGTGTGGGGCCATTAGATAAAGAACCTTCCATCAAGAGGCAGCCATGTAGCAAGTTTGATACCTGCCAAGGGCTTCAGTTTCTGATTCGACATTTTGCTACTTGTAAGAGAAGGACCAATGGAGGTTGTTTGCGATGCAAGCGCATGTGGCAGATCCTAAGATTACACGCATCCATTTGTGACCAACCAAACGATTGCCAGGTTCCCCTTT</genome_strand>
        <mrna_strand>GTAATCACTATGTCATCCCTTAACTTTTCAGACGGTATCGATAAATTTTCCGGCGAAATGTCTGAGGTTGATATCCAAATCGTCACCTCCGGCGGCCTCCGCATTCCGGCACATTCCGCCGTTCTG.............................................................................................................................................................................................................GCTGCTGCTTCGACGGTTCTGGAGAACATACTAGCTCGGCCGGGAAAGCGGCGGAGCTCCGAGAGAACGATTCGGATTCTTGGCGTGTT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCCGGTTTCTCTATTCT-TTCAAGTGCACTGAAGAGCAGATGAAGAGACATGGGATCCATCTGCTAGCACTTTCTCATGTGTACTTGGTACCGCAGCTGAAACAGAGATGCACAAAGGGGTTGGCCGAGCGATTGACGATTGAGAATGCTGTGGATTTGCTTCAACTTGCGAGACTATGTGATGCACCAGATCTATATCTTAAGAGTATGAAATTTTTGTCTAGTAATTTCAAGAAAGTTGAGGAGACTGAGGGCTGGAAATTCCTTCAACATCATGATCCCTGGCTTGAACTTGAAATTCTACAGTTCATGGATGAGGCTGAGTTG......................................................................................................................................................................................................................CGGAAGAAGAGGACAAGGAGACACAAACTAGAGCGGAGCTTGTATTTACAGCTAAGCGAAGCGATGGATTGTTTGGAGCACATTTGCACTGAAGGATGTACTAGTGTGGGGCCATTAGATAAAGAACCTTCCATCAAGAGGCAGCCATGTAGCAAGTTTGATACCTGCCAAGGGCTTCAGTTTCTGATTCGACATTTTGCTACTTGTAAGAGAAGGACCAATGGAGGTTGTTTGCGATGCAAGCGCATGTGGCAGATCCTAAGATTACACGCATCCATTTGTGACCAACCAAACGATTGCCAGGGTCCCCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0127C05-mUEoa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U322115" ref_strand="+" ref_description="SGN-U322115        Tomato 200607 #1 [8 ESTs aligned] arabidopsis/peptide: AT2G31880.1 | Symbol: None | leucine-rich repeat transmembrane protein kinase, putative | chr2:13561973-13564054 FORWARD | Aliases: F20M17.8, F20M17_8 (evalue: 0, score=717) genbank/nr: gi|24421095|dbj|BAC07504.2| receptor-like protein kinase [Nicotiana tabacum](evalue: 0, score=967)">
      <seq>ttagaaaaaaaaaaaaatccatcaaccaccacagtttccctcgttcacctctctcctccctctctgtccggtttaccggaaaaacaagaatctcaaatgacttcgaatatccacttttttcttttatacgttgtgagccttttcctttttgttcaagcaagattgaatctttatccaccagatcatgctgcactcttgcttgtacaaaaggacttaggcatcatttctgttaacaacccgtgtacgctcgcaggaatatcgtgcgagcgtagaccgggtaacacaacacaagttgtgagagttacccgtattgtattcagatccaacggattaaagggaactttgtcttctgctattggcaaactcactgagctcaaagagctttctctttccgacaatcaactatctgaacaaatccccgttcagattattgattgtcggaagttagagattcttcaacttcaaaggaacagattttctgggaagattccatccgaattgtcagctttaaaccgtttaaggatagttgacttttcatcgaatgagttttcggggaatcttgatttcttgaagtactttcctaatctggaaaaactgtctctggctgataatatgttcactggaaaaataccattttcattgaaatctttccgaaatcttcgttttctcaacatttcagggaatagtttccttgaaggtccagtacctgtcatgagccaaattgagcatttatcagcagatttgaatcgaaaaaatggcgttcctaaacgttacattctagctgagaattcaacaaggatatctgcaatgggacctgcttcggttccagctccagctccagcacctgtcaatcgtgttgtaccggcgatgcataaacgtaagaacaagaaaaggaagttacgatcttggtttcttggtttcctagctggaacttttgctgggggtatatctgctgtgctctgttccttgctattcaagatggtaatgttcttcgtaagaagagggaataacgattcaagtttaacgatatacagtccactgatcaagaaagccgaggacttggctttcttagagaaggaagatggagtggcatcgcttgaaatgattggaaaaggtggctgtggagaagtttatagagcagagctaccggggagtaatgggaagattatagctataaagaagattatccaatccccaatggatgctgcagagatcacggaggaagatactaaggcgttgaacaagaaaatgcgtcaagttaaatcagaaattcaaattgtaggtcaaatcagacaccggaatctgcttccattactcgcgcatatgccaaggccagactgtcattacttggtctacgaatacatgaaaaatgggagtttacaggatatcctgcagcaagtcacagaaggcacaagggaattagattggttgggacgacacagaattgcagcgggggtagctgctggtctcgagtatctccatataaaccatactcaacgcataattcacagagatttaaagccagcaaatatcctacttgatgatgacatggaagctcgagttgctgattttggccttgcaaaggcagttccagatgctcatacacatatcaccacttcaaatgttgcaggaactgttggatttattgcaccagaatattatcagacactgaagtttacagataagtgtgatatatacagctttggtgtggtgctagctgtgttggttatcggtaagggtccatcggatgattttttccaacatacttctgagatgagtttagttaagtggctgaggaatgtaatgacttctgacgatcctaaaatagcaattgatcctaagcttataggaaatggatacgacgaacaaatgcttttggttctcaagatagcttgcttttgtactctcgacaatccaaaggagaggcctaacagtaaggatgttaggtgcatgttaactcagatcaagcattagataaccaatacactggttatgtaactaagaatctgttctgtattttcagtttcgcaagttgatattttgttgtaattgtgttatacatgtcaaatcaatattcattccaccttaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0127C05-mUEoa/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06SLm0127C05.1" temp_strand="-" temp_description="C06SLm0127C05.1  AC226020.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0127C05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="103659" stop="100974"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103359" g_stop="101274" g_length="2086"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="2087" r_length="2087" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="2088" polyA_stop="2111"/>
      <MATCH_line gen_id="C06SLm0127C05.1" gen_strand="-" ref_id="SGN-U322115" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>2086</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0127C05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U322115" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103359" e_stop="101274"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAG-AAAAAAAAAAAATCCATCAACCACCACAGTTTCCCTCGTTCACCTCTCTCCTCCCTCTCTGTCCGGTTTACCGGAAAAACAAGAATCTCAAATGACTTCGAATATCCACTTTTTTCTTTTATACGTTGTGAGCCTTTTCCTTTTTGTTCAAGCAAGATTGAATCTTTATCCACCAGATCATGCTGCACTCTTGCTTGTACAAAAGGACTTAGGCATCATTTCTGTTAACAACCCGTGTACGCTCGCAGGAATATCGTGCGAGCGTAGACCGGGTAACACAACACAAGTTGTGAGAGTTACCCGTATTGTATTCAGATCCAACGGATTAAAGGGAACTTTGTCTTCTGCTATTGGCAAACTCACTGAGCTCAAAGAGCTTTCTCTTTCCGACAATCAACTATCTGAACAAATCCCCGTTCAGATTATTGATTGTCGGAAGTTAGAGATTCTTCAACTTCAAAGGAACAGATTTTCTGGGAAGATTCCATCCGAATTGTCAGCTTTAAACCGTTTAAGGATAGTTGACTTTTCATCGAATGAGTTTTCGGGGAATCTTGATTTCTTGAAGTACTTTCCTAATCTGGAAAAACTGTCTCTGGCTGATAATATGTTCACTGGAAAAATACCATTTTCATTGAAATCTTTCCGAAATCTTCGTTTTCTCAACATTTCAGGGAATAGTTTCCTTGAAGGTCCAGTACCTGTCATGAGCCAAATTGAGCATTTATCAGCAGATTTGAATCGAAAAAATGGCGTTCCTAAACGTTACATTCTAGCTGAGAATTCAACAAGGATATCTGCAATGGGACCTGCTTCGGTTCCAGCTCCAGCTCCAGCACCTGTCAATCGTGTTGTACCGGCGATGCATAAACGTAAGAACAAGAAAAGGAAGTTACGATCTTGGTTTCTTGGTTTCCTAGCTGGAACTTTTGCTGGGGGTATATCTGCTGTGCTCTGTTCCTTGCTATTCAAGATGGTAATGTTCTTCGTAAGAAGAGGGAATAACGATTCAAGTTTAACGATATACAGTCCACTGATCAAGAAAGCCGAGGACTTGGCTTTCTTAGAGAAGGAAGATGGAGTGGCATCGCTTGAAATGATTGGAAAAGGTGGCTGTGGAGAAGTTTATAGAGCAGAGCTACCGGGGAGTAATGGGAAGATTATAGCTATAAAGAAGATTATCCAATCCCCAATGGATGCTGCAGAGATCACGGAGGAAGATACTAAGGCGTTGAACAAGAAAATGCGTCAAGTTAAATCAGAAATTCAAATTGTAGGTCAAATCAGACACCGGAATCTGCTTCCATTACTCGCGCATATGCCAAGGCCAGACTGTCATTACTTGGTCTACGAATACATGAAAAATGGGAGTTTACAGGATATCCTGCAGCAAGTCACAGAAGGCACAAGGGAATTAGATTGGTTGGGACGACACAGAATTGCAGCGGGGGTAGCTGCTGGTCTCGAGTATCTCCATATAAACCATACTCAACGCATAATTCACAGAGATTTAAAGCCAGCAAATATCCTACTTGATGATGACATGGAAGCTCGAGTTGCTGATTTTGGCCTTGCAAAGGCAGTTCCAGATGCTCATACACATATCACCACTTCAAATGTTGCAGGAACTGTTGGATTTATTGCACCAGAATATTATCAGACACTGAAGTTTACAGATAAGTGTGATATATACAGCTTTGGTGTGGTGCTAGCTGTGTTGGTTATCGGTAAGGGTCCATCGGATGATTTTTTCCAACATACTTCTGAGATGAGTTTAGTTAAGTGGCTGAGGAATGTAATGACTTCTGACGATCCTAAAATAGCAATTGATCCTAAGCTTATAGGAAATGGATACGACGAACAAATGCTTTTGGTTCTCAAGATAGCTTGCTTTTGTACTCTCGACAATCCAAAGGAGAGGCCTAACAGTAAGGATGTTAGGTGCATGTTAACTCAGATCAAGCATTAGATAACCAATACACTGGTTATGTAACTAAGAATCTGTTCTGTATTTTCAGTTTCGCAAGTTGATATTTTGTTGTAATTGTGTTATACATGTCAAATCAATATTCATTCCACCTT</genome_strand>
        <mrna_strand>TTAGAAAAAAAAAAAAATCCATCAACCACCACAGTTTCCCTCGTTCACCTCTCTCCTCCCTCTCTGTCCGGTTTACCGGAAAAACAAGAATCTCAAATGACTTCGAATATCCACTTTTTTCTTTTATACGTTGTGAGCCTTTTCCTTTTTGTTCAAGCAAGATTGAATCTTTATCCACCAGATCATGCTGCACTCTTGCTTGTACAAAAGGACTTAGGCATCATTTCTGTTAACAACCCGTGTACGCTCGCAGGAATATCGTGCGAGCGTAGACCGGGTAACACAACACAAGTTGTGAGAGTTACCCGTATTGTATTCAGATCCAACGGATTAAAGGGAACTTTGTCTTCTGCTATTGGCAAACTCACTGAGCTCAAAGAGCTTTCTCTTTCCGACAATCAACTATCTGAACAAATCCCCGTTCAGATTATTGATTGTCGGAAGTTAGAGATTCTTCAACTTCAAAGGAACAGATTTTCTGGGAAGATTCCATCCGAATTGTCAGCTTTAAACCGTTTAAGGATAGTTGACTTTTCATCGAATGAGTTTTCGGGGAATCTTGATTTCTTGAAGTACTTTCCTAATCTGGAAAAACTGTCTCTGGCTGATAATATGTTCACTGGAAAAATACCATTTTCATTGAAATCTTTCCGAAATCTTCGTTTTCTCAACATTTCAGGGAATAGTTTCCTTGAAGGTCCAGTACCTGTCATGAGCCAAATTGAGCATTTATCAGCAGATTTGAATCGAAAAAATGGCGTTCCTAAACGTTACATTCTAGCTGAGAATTCAACAAGGATATCTGCAATGGGACCTGCTTCGGTTCCAGCTCCAGCTCCAGCACCTGTCAATCGTGTTGTACCGGCGATGCATAAACGTAAGAACAAGAAAAGGAAGTTACGATCTTGGTTTCTTGGTTTCCTAGCTGGAACTTTTGCTGGGGGTATATCTGCTGTGCTCTGTTCCTTGCTATTCAAGATGGTAATGTTCTTCGTAAGAAGAGGGAATAACGATTCAAGTTTAACGATATACAGTCCACTGATCAAGAAAGCCGAGGACTTGGCTTTCTTAGAGAAGGAAGATGGAGTGGCATCGCTTGAAATGATTGGAAAAGGTGGCTGTGGAGAAGTTTATAGAGCAGAGCTACCGGGGAGTAATGGGAAGATTATAGCTATAAAGAAGATTATCCAATCCCCAATGGATGCTGCAGAGATCACGGAGGAAGATACTAAGGCGTTGAACAAGAAAATGCGTCAAGTTAAATCAGAAATTCAAATTGTAGGTCAAATCAGACACCGGAATCTGCTTCCATTACTCGCGCATATGCCAAGGCCAGACTGTCATTACTTGGTCTACGAATACATGAAAAATGGGAGTTTACAGGATATCCTGCAGCAAGTCACAGAAGGCACAAGGGAATTAGATTGGTTGGGACGACACAGAATTGCAGCGGGGGTAGCTGCTGGTCTCGAGTATCTCCATATAAACCATACTCAACGCATAATTCACAGAGATTTAAAGCCAGCAAATATCCTACTTGATGATGACATGGAAGCTCGAGTTGCTGATTTTGGCCTTGCAAAGGCAGTTCCAGATGCTCATACACATATCACCACTTCAAATGTTGCAGGAACTGTTGGATTTATTGCACCAGAATATTATCAGACACTGAAGTTTACAGATAAGTGTGATATATACAGCTTTGGTGTGGTGCTAGCTGTGTTGGTTATCGGTAAGGGTCCATCGGATGATTTTTTCCAACATACTTCTGAGATGAGTTTAGTTAAGTGGCTGAGGAATGTAATGACTTCTGACGATCCTAAAATAGCAATTGATCCTAAGCTTATAGGAAATGGATACGACGAACAAATGCTTTTGGTTCTCAAGATAGCTTGCTTTTGTACTCTCGACAATCCAAAGGAGAGGCCTAACAGTAAGGATGTTAGGTGCATGTTAACTCAGATCAAGCATTAGATAACCAATACACTGGTTATGTAACTAAGAATCTGTTCTGTATTTTCAGTTTCGCAAGTTGATATTTTGTTGTAATTGTGTTATACATGTCAAATCAATATTCATTCCACCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0127C05-mUEoa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U324611" ref_strand="+" ref_description="SGN-U324611        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: AT3G48260.1 | Symbol: None | protein kinase family protein, contains protein kinase domain, Pfam:PF00069 | chr3:17883997-17886205 REVERSE | Aliases: None (evalue: 2e-82, score=273) genbank/nr: gi|28874836|emb|CAC84087.1| ZIK1 protein [Medicago sativa](evalue: 1e-85, score=294)">
      <seq>ttctttcactgatccttaatacgcttacatacttgttcgtttggtgtaactgagtcttctttccaattacaatctccgcagacgaattgtatgattgttattttggcaaaatacttaattacgctgtttcatattgatctgaattgagtttattgttttgtcaaaaagctaggttttggatttttttttctttttctactcgatactcaattcattggaacaaagagaatgcagcaggaatctacgtctgaacaggaaccggacgattctgaatcggaaccggagttcgttgagctcgatccttctggtcgatacggccggtacaaagaggttctgggaaaaggagctttcaagaaagtttaccgagcatttgatgaattggaggggattgaagtagcttggaaccaggttaaattggctgatctcttgaggaatgctgtggacttggagcgtctttattccgaagttcatttgcttaaaaccctcaagcacaagaatataatcaaattctataactcgtgggttgactcaaagaatgagaatatcaacatcattactgaaattttcacttctgggactttaagacagtaccgcaaaaaacataagagggttgatatcagagcacttaagaattggtctaggcagatattagagggtctctcatatctacatggtcatgaccctccaattattcatcgggacctcaagtgtgataacatttttatcaatggtaaccaaggggaggttaagattggtgacttgggactcgctgcaattctttgcaagggctcgtgctgctcatagtgtcattggtacaccagaattcatggcaccagaactttatgaagaggaatacgatgagctagtagatatctatgcctttggcatgtgcctgctgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0127C05-mUEoa/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06SLm0127C05.1" temp_strand="+" temp_description="C06SLm0127C05.1  AC226020.1 htgs_phase:3 submitted_to_sgn_as:C06SLm0127C05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="113259" stop="116461"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113559" g_stop="113879" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="321" r_length="321" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113880" i_stop="114788" i_length="909">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114789" g_stop="114826" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="359" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="114827" i_stop="115385" i_length="559">
            <donor d_prob="0.900" d_score="0.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="115386" g_stop="115613" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="587" r_length="228" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="115614" i_stop="115738" i_length="125">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="115739" g_stop="115962" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="588" r_stop="812" r_length="225" r_score="0.991"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="115963" i_stop="116074" i_length="112">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="116075" g_stop="116161" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="813" r_stop="899" r_length="87" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0127C05.1" gen_strand="+" ref_id="SGN-U324611" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>898</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0127C05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U324611" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113559" e_stop="113879"/>
          <exon e_start="114789" e_stop="114826"/>
          <exon e_start="115386" e_stop="115613"/>
          <exon e_start="115739" e_stop="115962"/>
          <exon e_start="116075" e_stop="116161"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTTCACTGATCCTTAATACGCTTACATACTTGTTCGTTTGGTGTAACTGAGTCTTCTTTCCAATTACAATCTCCGCAGACGAATTGTATGATTGTTATTTTGGCAAAATACTTAATTACGCTGTTTCATATTGATCTGAATTGAGTTTATTGTTTTGTCAAAAAGCTAGGTTTTGGATTTTTTTTTCTTTTTCTACTCGATACTCAATTCATTGGAACAAAGAGAATGCAGCAGGAATCTACGTCTGAACAGGAACCGGACGATTCTGAATCGGAACCGGAGTTCGTTGAGCTCGATCCTTCTGGTCGATACGGCCGGGTTAGTTTCTCGCTCACTCGCTTCTGCATTTGAAAACTTATTTTTTGGCTTGTTGTACCGCTTAAGTAGTGTTTTGAAGTACATTTTTGAAACTGCCTACTGACTTTATTCTGCTTATTTTTATATGGTCGGACTGAAATGCATAAGGTGAAATTTGTTGAAGTAACATTTGAAAAGTTAGTTTGAGTAGGGAAAAGTTCATCATATCAAATTAAAAATTTAATGAAGGAGAAAGCTTGAACTGGTTGGATGGTTGTTAGGTATTGTTTCTGTATTGTATTGTAATGTACAGTAGTCTTTAATGAATACAACGTCTAGATAGCTTGTGTCGTTTTTCATCGTAACATAATGTTACACATCAATAATTTAAAGGATAAATTTATAAAAGAAGGATGAGCTTGTAAAAGAAGTAGGGTACGGGATAGAGTTGCTATAAAAAGGTTGGGTAAAAGATAAAATAAGTATATTTAATTTTAAGTAAATAAAAAATGAGGGAAAAAAGTTAACGACTTGATCACACCAAATGTTGTTACACAAAATGGGAATTTTCGTCATTACCTCTAACAATAAGTTTAAGGATACGCTCAATAAAATGAGTAACAATTATAACAAACACAGTATTTAAACTAACAACACAATACAATCGATTGCAACCACCCAAACAAGTTGAATAGTGTAAAGATTTCGGGAATCTCAAAATGGAAAGAGAATCATTTAAATTGGGACTATGGGGGTAATATTTCTTTTTGTATTTTACTTTTCCTGGGATTCTATTCTTTCTGACTGCTTTTCTATTACTGTTGTTACATTTCTGGCTAATATTTTTCAGGTTGGTGTATATTAAATTAGTCATTACATATATTTGATTCTTCATTGTAATTAAGGAATTGATTGTCTTGTTATATGCAGTACAAAGAGGTTCTGGGAAAAGGAGCTTTCAAGAAAGTGTATCCTATTTTGAATGTCTTCACGTGCATAATGCCCGTTTATTTCATTGATGTGTTTGACAGGATAAGGAATATAAGATGTTAATTTGAATGGTACTCTCTTTGTTCCAATTTATGTGCTGGTCGTGCATGGGTTTTGAGGAAAAAATGACTTTTGAACTTATGGTCTTAACCATGTCGTTAGTTTAATTTGGGCTATAAAAGAGAGGAATGAGAAGTTCACGTTAAATTGTTTCCAAGTGTGAGAATATGTGCCATTTTTTCTGGAACACACTGTTAAGGAATTAGTGTCACATAAATGAAACAGAGGGGATATATTATATTTGTAGTAAGGGAAGAAAATATTATAGTGATAGTTAAAAAGTTTAGATTGATTAAGAGGACATTACATAAAGGTATTAAATTTGAATATTTATATGTTTTAATTCTTAATATTTGTGAAAGTTGTATGATTGACATATAACCCGAGATGAACTATTGCGTTACTGCCTTTCCCCTCATTAATGAATGTTGCCAAGTGAAACTATTGTCCATTCTTGACTTACCATCGGTAATATAGTTACCGAGCATTTGATGAATTGGAGGGGATTGAAGTAGCTTGGAACCAGGTTAAATTGGCTGATCTCTTGAGGAATGCTGTGGACTTGGAGCGTCTTTATTCCGAAGTTCATTTGCTTAAAACCCTCAAGCACAAGAATATAATCAAATTCTATAACTCGTGGGTTGACTCAAAGAATGAGAATATCAACATCATTACTGAAATTTTCACTTCTGGGACTTTAAGACAGTATGGCTATTCGTTTTTTTTTCTTCTGTTTTTTTTTTTGCTTTTCTTTGCTCAATTCTTTAACCCCACTACCCATATTTTTCAAATATTGGATTATGGACTACTTTTTCTGTATGCTCGTGAAGGTACCGCAAAAAACATAAGAGGGTTGATATCAGAGCACTTAAGAATTGGTCTAGGCAGATATTAGAGGGTCTCTCATATCTACATGGTCATGACCCTCCAATTATTCATCGGGACCTCAAGTGTGATAACATTTTTATCAATGGTAACCAAGGGGAGGTTAAGATTGGTGACTTGGGACTCGCTGCAATTCTTTGCAA-GGCTCGTGCTGCTCATAGTGTCATTGGTAAGGTCCTACTCAGATTTTCTCAGTTTTGCAACTGTACTAAAGGTTGTAATTGGCTGTTCATTGGCAGTTTAGATGGTTCTGAAAAGTGCACTTCTATATTTGATCTCAGGTACACCAGAATTCATGGCACCAGAACTTTATGAAGAGGAATACGATGAGCTAGTAGATATCTATGCCTTTGGCATGTGCCTGCTGG</genome_strand>
        <mrna_strand>TTCTTTCACTGATCCTTAATACGCTTACATACTTGTTCGTTTGGTGTAACTGAGTCTTCTTTCCAATTACAATCTCCGCAGACGAATTGTATGATTGTTATTTTGGCAAAATACTTAATTACGCTGTTTCATATTGATCTGAATTGAGTTTATTGTTTTGTCAAAAAGCTAGGTTTTGGATTTTTTTTTCTTTTTCTACTCGATACTCAATTCATTGGAACAAAGAGAATGCAGCAGGAATCTACGTCTGAACAGGAACCGGACGATTCTGAATCGGAACCGGAGTTCGTTGAGCTCGATCCTTCTGGTCGATACGGCCGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACAAAGAGGTTCTGGGAAAAGGAGCTTTCAAGAAAGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTACCGAGCATTTGATGAATTGGAGGGGATTGAAGTAGCTTGGAACCAGGTTAAATTGGCTGATCTCTTGAGGAATGCTGTGGACTTGGAGCGTCTTTATTCCGAAGTTCATTTGCTTAAAACCCTCAAGCACAAGAATATAATCAAATTCTATAACTCGTGGGTTGACTCAAAGAATGAGAATATCAACATCATTACTGAAATTTTCACTTCTGGGACTTTAAGACA.............................................................................................................................GTACCGCAAAAAACATAAGAGGGTTGATATCAGAGCACTTAAGAATTGGTCTAGGCAGATATTAGAGGGTCTCTCATATCTACATGGTCATGACCCTCCAATTATTCATCGGGACCTCAAGTGTGATAACATTTTTATCAATGGTAACCAAGGGGAGGTTAAGATTGGTGACTTGGGACTCGCTGCAATTCTTTGCAAGGGCTCGTGCTGCTCATAGTGTCATTG................................................................................................................GTACACCAGAATTCATGGCACCAGAACTTTATGAAGAGGAATACGATGAGCTAGTAGATATCTATGCCTTTGGCATGTGCCTGCTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>24</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="8481" PGL_stop="11514"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="8481" e_stop="8701"/>
            <exon e_start="8945" e_stop="9001"/>
            <exon e_start="9128" e_stop="9214"/>
            <exon e_start="10048" e_stop="10128"/>
            <exon e_start="10278" e_stop="10390"/>
            <exon e_start="10512" e_stop="10561"/>
            <exon e_start="11228" e_stop="11514"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.783" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.980" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.929" acc_prob="0.921" e_score="1.000"/>
          <exon-intron don_prob="0.903" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.924" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="8481" e_stop="8701" e_length="221"/>
          </exon>
          <intron i_serial="1" don_prob="0.783" acc_prob="0.996">
            <gDNA_intron_boundary i_start="8702" i_stop="8944" i_length="243"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="8945" e_stop="9001" e_length="57"/>
          </exon>
          <intron i_serial="2" don_prob="0.980" acc_prob="0.999">
            <gDNA_intron_boundary i_start="9002" i_stop="9127" i_length="126"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="9128" e_stop="9214" e_length="87"/>
          </exon>
          <intron i_serial="3" don_prob="0.929" acc_prob="0.921">
            <gDNA_intron_boundary i_start="9215" i_stop="10047" i_length="833"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="10048" e_stop="10128" e_length="81"/>
          </exon>
          <intron i_serial="4" don_prob="0.903" acc_prob="0.991">
            <gDNA_intron_boundary i_start="10129" i_stop="10277" i_length="149"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="10278" e_stop="10390" e_length="113"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="10391" i_stop="10511" i_length="121"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="10512" e_stop="10561" e_length="50"/>
          </exon>
          <intron i_serial="6" don_prob="0.924" acc_prob="0.999">
            <gDNA_intron_boundary i_start="10562" i_stop="11227" i_length="666"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="11228" e_stop="11514" e_length="287"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8481" stop="8701"/>
              <exon start="8945" stop="9001"/>
              <exon start="9128" stop="9214"/>
              <exon start="10048" stop="10128"/>
              <exon start="10278" stop="10390"/>
              <exon start="10512" stop="10561"/>
              <exon start="11228" stop="11514"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U314773" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8637" stop="8701"/>
              <exon start="8945" stop="9001"/>
              <exon start="9128" stop="9214"/>
              <exon start="10048" stop="10128"/>
              <exon start="10278" stop="10390"/>
              <exon start="10512" stop="10561"/>
              <exon start="11228" stop="11514"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U314771" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATATGGAAGGTCTTACAATAGTTGGAGCAACTCCTTGTGTTTCTTCTTCACTTCGTAGAATCTCTTCCAAAACAACCTGTTTGGCCTCCAGACTTACCCCAAAATCCGTCAAGAAGCACAGCCTAGCTGCATTGCAACCAGCATTTTATCTTTTCTCAACAAATGTCCCCAAAAGGCAAATTAGAGCTCGTATATTCTTACCCCATTTGGTTGCTTCTATG : GAAGAAGTGGAGCAGACTTATATCATGATTAAGCCTGATGGTGTTCAGAGAGGCCTT : GTTGGAGAAATTATATCCAGATTTGAGAGAAAAGGGTTTAAGCTAACTGGATTAAAGCTTTTTCAGTGCCCCAAAGAATTAGCGGAG : GAGCATTACAAGGATCTACAGTCCAAGCCATTCTTCCCCAAGCTGATTGACTACATTACATCTGGTCCAGTTGTCTGTATG : GCTTGGGAGGGTGTTGGTGTTGTTGCTTCAGCACGAAAGCTAATAGGAGCAACTAATCCTCTTAATGCTGAACCAGGCACAATTAGAGGAGACCTTGCTGTTCAAACTGGAAG : AAATGTGGTGCATGGAAGTGATAGCCCCGACAATGGCAAGCGTGAAATAG : GTCTTTGGTTTAATGAAGGTGAATTATGTGCATGGGCAGCAGCTCTAGAACCTTGGTTGGTAGAATAATACCTTAGCGTAGTTATATGATTCTTCATTTAAGTTTTGGAGGTTTGAGCTTAATCACTTGTTCGGCATATGTAATGCAAAAATACAAGCACTGTCATTGTATCATTTCCAGCATGGTTGGCCGGTTTATAGTAAGAGTCTAAGAGCGGCTCACTACGTGATATTTTTTCAAGTTTTCCACTTGATGTCAAACTGCAGAATTAAATTTGTAGTTCTTCT</gDNA_template>
            <first_frame> I  W  K  V  L  Q  *  L  E  Q  L  L  V  F  L  L  H  F  V  E  S  L  P  K  Q  P  V  W  P  P  D  L  P  Q  N  P  S  R  S  T  A  *  L  H  C  N  Q  H  F  I  F  S  Q  Q  M  S  P  K  G  K  L  E  L  V  Y  S  Y  P  I  W  L  L  L  W :   K  K  W  S  R  L  I  S  *  L  S  L  M  V  F  R  E  A  L :   L  E  K  L  Y  P  D  L  R  E  K  G  L  S  *  L  D  *  S  F  F  S  A  P  K  N  *  R  R :   S  I  T  R  I  Y  S  P  S  H  S  S  P  S  *  L  T  T  L  H  L  V  Q  L  S  V  W :   L  G  R  V  L  V  L  L  L  Q  H  E  S  *  *  E  Q  L  I  L  L  M  L  N  Q  A  Q  L  E  E  T  L  L  F  K  L  E   : E  M  W  C  M  E  V  I  A  P  T  M  A  S  V  K  *  :  V  F  G  L  M  K  V  N  Y  V  H  G  Q  Q  L  *  N  L  G  W  *  N  N  T  L  A  *  L  Y  D  S  S  F  K  F  W  R  F  E  L  N  H  L  F  G  I  C  N  A  K  I  Q  A  L  S  L  Y  H  F  Q  H  G  W  P  V  Y  S  K  S  L  R  A  A  H  Y  V  I  F  F  Q  V  F  H  L  M  S  N  C  R  I  K  F  V  V  L   </first_frame>
            <second_frame>  Y  G  R  S  Y  N  S  W  S  N  S  L  C  F  F  F  T  S  *  N  L  F  Q  N  N  L  F  G  L  Q  T  Y  P  K  I  R  Q  E  A  Q  P  S  C  I  A  T  S  I  L  S  F  L  N  K  C  P  Q  K  A  N  *  S  S  Y  I  L  T  P  F  G  C  F  Y   : G  R  S  G  A  D  L  Y  H  D  *  A  *  W  C  S  E  R  P   : C  W  R  N  Y  I  Q  I  *  E  K  R  V  *  A  N  W  I  K  A  F  S  V  P  Q  R  I  S  G   : G  A  L  Q  G  S  T  V  Q  A  I  L  P  Q  A  D  *  L  H  Y  I  W  S  S  C  L  Y   : G  L  G  G  C  W  C  C  C  F  S  T  K  A  N  R  S  N  *  S  S  *  C  *  T  R  H  N  *  R  R  P  C  C  S  N  W  K  :  K  C  G  A  W  K  *  *  P  R  Q  W  Q  A  *  N  R :   S  L  V  *  *  R  *  I  M  C  M  G  S  S  S  R  T  L  V  G  R  I  I  P  *  R  S  Y  M  I  L  H  L  S  F  G  G  L  S  L  I  T  C  S  A  Y  V  M  Q  K  Y  K  H  C  H  C  I  I  S  S  M  V  G  R  F  I  V  R  V  *  E  R  L  T  T  *  Y  F  F  K  F  S  T  *  C  Q  T  A  E  L  N  L  *  F  F  </second_frame>
            <third_frame>   M  E  G  L  T  I  V  G  A  T  P  C  V  S  S  S  L  R  R  I  S  S  K  T  T  C  L  A  S  R  L  T  P  K  S  V  K  K  H  S  L  A  A  L  Q  P  A  F  Y  L  F  S  T  N  V  P  K  R  Q  I  R  A  R  I  F  L  P  H  L  V  A  S  M  :  E  E  V  E  Q  T  Y  I  M  I  K  P  D  G  V  Q  R  G  L  :  V  G  E  I  I  S  R  F  E  R  K  G  F  K  L  T  G  L  K  L  F  Q  C  P  K  E  L  A  E  :  E  H  Y  K  D  L  Q  S  K  P  F  F  P  K  L  I  D  Y  I  T  S  G  P  V  V  C  M  :  A  W  E  G  V  G  V  V  A  S  A  R  K  L  I  G  A  T  N  P  L  N  A  E  P  G  T  I  R  G  D  L  A  V  Q  T  G  R :   N  V  V  H  G  S  D  S  P  D  N  G  K  R  E  I   : G  L  W  F  N  E  G  E  L  C  A  W  A  A  A  L  E  P  W  L  V  E  *  Y  L  S  V  V  I  *  F  F  I  *  V  L  E  V  *  A  *  S  L  V  R  H  M  *  C  K  N  T  S  T  V  I  V  S  F  P  A  W  L  A  G  L  *  *  E  S  K  S  G  S  L  R  D  I  F  S  S  F  P  L  D  V  K  L  Q  N  *  I  C  S  S  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0127C05.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="8483" stop="8701"/>
                    <exon start="8945" stop="9001"/>
                    <exon start="9128" stop="9214"/>
                    <exon start="10048" stop="10128"/>
                    <exon start="10278" stop="10390"/>
                    <exon start="10512" stop="10561"/>
                    <exon start="11228" stop="11295"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>672</number_coding_nucleotides>
                  <number_encoded_amino_acids>224</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MEGLTIVGATPCVSSSLRRISSKTTCLASRLTPKSVKKHSLAALQPAFYLFSTNVPKRQIRARIFLPHLVASMEEVEQTYIMIKPDGVQRGLVGEIISRFERKGFKLTGLKLFQCPKELAEEHYKDLQSKPFFPKLIDYITSGPVVCMAWEGVGVVASARKLIGATNPLNAEPGTIRGDLAVQTGRNVVHGSDSPDNGKREIGLWFNEGELCAWAAALEPWLVE*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0127C05.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="11309" stop="11512"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LYDSSFKFWRFELNHLFGICNAKIQALSLYHFQHGWPVYSKSLRAAHYVIFFQVFHLMSNCRIKFVVL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="18105" PGL_stop="17641"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="18105" e_stop="17641"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="18105" e_stop="17641" e_length="465"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18105" stop="17641"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U342420" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCAAATTCAAAAAAATAAAGAAATAACAGCAAGTTTCTTTGAAAACAAAATAAAGAAAATGGTGTCAAGAGTGGAAGAAGCAATGAAAATAAGGCAGCAACAGGAGGTGAAAAATTACCAAGTACAGAAGCAATTGATGCAATGCAACAAAGGAAAAACAAATAAGTTCAAGAGGAGTAGTTCTAATGTTGAAGAAGATGGTGCTTCTTCTGCTATTCTTTTGCTTGCTTGTATTGCTTGTGCCACTTCCCATCACCTATAGAATAATTAATCATAGATTATCATCACCTTGTTAACCAAAATATTAACTACATGCAGTCGCTAATAATTATCCGTCTCTGTTTCATTTTATATAACACTCTTTTTGTTTTTTTATCTGTCAAGAGTTCAATGTATGTTCCTTCTAGTCATATAATATATAGAAGATTAGTAGTAGCTCTTTTTGGCTAGAGATAGATTCATGAT</gDNA_template>
            <first_frame> S  N  S  K  K  *  R  N  N  S  K  F  L  *  K  Q  N  K  E  N  G  V  K  S  G  R  S  N  E  N  K  A  A  T  G  G  E  K  L  P  S  T  E  A  I  D  A  M  Q  Q  R  K  N  K  *  V  Q  E  E  *  F  *  C  *  R  R  W  C  F  F  C  Y  S  F  A  C  L  Y  C  L  C  H  F  P  S  P  I  E  *  L  I  I  D  Y  H  H  L  V  N  Q  N  I  N  Y  M  Q  S  L  I  I  I  R  L  C  F  I  L  Y  N  T  L  F  V  F  L  S  V  K  S  S  M  Y  V  P  S  S  H  I  I  Y  R  R  L  V  V  A  L  F  G  *  R  *  I  H  D </first_frame>
            <second_frame>  Q  I  Q  K  N  K  E  I  T  A  S  F  F  E  N  K  I  K  K  M  V  S  R  V  E  E  A  M  K  I  R  Q  Q  Q  E  V  K  N  Y  Q  V  Q  K  Q  L  M  Q  C  N  K  G  K  T  N  K  F  K  R  S  S  S  N  V  E  E  D  G  A  S  S  A  I  L  L  L  A  C  I  A  C  A  T  S  H  H  L  *  N  N  *  S  *  I  I  I  T  L  L  T  K  I  L  T  T  C  S  R  *  *  L  S  V  S  V  S  F  Y  I  T  L  F  L  F  F  Y  L  S  R  V  Q  C  M  F  L  L  V  I  *  Y  I  E  D  *  *  *  L  F  L  A  R  D  R  F  M   </second_frame>
            <third_frame>   K  F  K  K  I  K  K  *  Q  Q  V  S  L  K  T  K  *  R  K  W  C  Q  E  W  K  K  Q  *  K  *  G  S  N  R  R  *  K  I  T  K  Y  R  S  N  *  C  N  A  T  K  E  K  Q  I  S  S  R  G  V  V  L  M  L  K  K  M  V  L  L  L  L  F  F  C  L  L  V  L  L  V  P  L  P  I  T  Y  R  I  I  N  H  R  L  S  S  P  C  *  P  K  Y  *  L  H  A  V  A  N  N  Y  P  S  L  F  H  F  I  *  H  S  F  C  F  F  I  C  Q  E  F  N  V  C  S  F  *  S  Y  N  I  *  K  I  S  S  S  S  F  W  L  E  I  D  S  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0127C05.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="18104" stop="17844"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>258</number_coding_nucleotides>
                  <number_encoded_amino_acids>86</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QIQKNKEITASFFENKIKKMVSRVEEAMKIRQQQEVKNYQVQKQLMQCNKGKTNKFKRSSSNVEEDGASSAILLLACIACATSHHL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="24954" PGL_stop="28783"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="24954" e_stop="25001"/>
            <exon e_start="25131" e_stop="25154"/>
            <exon e_start="25274" e_stop="25374"/>
            <exon e_start="26282" e_stop="26397"/>
            <exon e_start="26485" e_stop="26584"/>
            <exon e_start="27125" e_stop="27271"/>
            <exon e_start="27359" e_stop="27419"/>
            <exon e_start="27494" e_stop="27734"/>
            <exon e_start="28004" e_stop="28087"/>
            <exon e_start="28266" e_stop="28355"/>
            <exon e_start="28499" e_stop="28783"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.989" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="24954" e_stop="25001" e_length="48"/>
          </exon>
          <intron i_serial="1" don_prob="0.989" acc_prob="0.993">
            <gDNA_intron_boundary i_start="25002" i_stop="25130" i_length="129"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="25131" e_stop="25154" e_length="24"/>
          </exon>
          <intron i_serial="2" don_prob="0.976" acc_prob="1.000">
            <gDNA_intron_boundary i_start="25155" i_stop="25273" i_length="119"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="25274" e_stop="25374" e_length="101"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.991">
            <gDNA_intron_boundary i_start="25375" i_stop="26281" i_length="907"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="26282" e_stop="26397" e_length="116"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="26398" i_stop="26484" i_length="87"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="26485" e_stop="26584" e_length="100"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="26585" i_stop="27124" i_length="540"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="27125" e_stop="27271" e_length="147"/>
          </exon>
          <intron i_serial="6" don_prob="0.997" acc_prob="1.000">
            <gDNA_intron_boundary i_start="27272" i_stop="27358" i_length="87"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="27359" e_stop="27419" e_length="61"/>
          </exon>
          <intron i_serial="7" don_prob="0.992" acc_prob="0.987">
            <gDNA_intron_boundary i_start="27420" i_stop="27493" i_length="74"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="27494" e_stop="27734" e_length="241"/>
          </exon>
          <intron i_serial="8" don_prob="0.981" acc_prob="0.997">
            <gDNA_intron_boundary i_start="27735" i_stop="28003" i_length="269"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="28004" e_stop="28087" e_length="84"/>
          </exon>
          <intron i_serial="9" don_prob="0.999" acc_prob="0.986">
            <gDNA_intron_boundary i_start="28088" i_stop="28265" i_length="178"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="28266" e_stop="28355" e_length="90"/>
          </exon>
          <intron i_serial="10" don_prob="0.995" acc_prob="0.999">
            <gDNA_intron_boundary i_start="28356" i_stop="28498" i_length="143"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="28499" e_stop="28783" e_length="285"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24954" stop="25001"/>
              <exon start="25131" stop="25154"/>
              <exon start="25274" stop="25374"/>
              <exon start="26282" stop="26397"/>
              <exon start="26485" stop="26584"/>
              <exon start="27125" stop="27271"/>
              <exon start="27359" stop="27419"/>
              <exon start="27494" stop="27734"/>
              <exon start="28004" stop="28087"/>
              <exon start="28266" stop="28355"/>
              <exon start="28499" stop="28783"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U316115" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTAAAACGAACTCCATTTTCCTTCTCAGTTCACAAAAAAAAATCATGG : GCAAGATTAAGATCGGAATCAATG : GTTTTGGAAGAATTGGCCGATTGGTGGCCAGGGTGGCTCTACAAAGAGATGATGTTGAGCTCGTTGCTGTTAACGATCCCTTCATCACCGTGGAATACATG : ACATACATGTTTAAGTATGACAGTGTTCACGGTCAATGGAAGAACAATGAGCTCAAGGTTAAGGATGAGAAGACTCTTCTCTTTGGTGAGAAGCCTGTTACTGTATTTGGCATAAG : AAACCCAGAGGAAATCCCATGGGCTGAGGCTGGAGCAGAGTACATCGTGGAGTCAACTGGAGTCTTCACTGATAAAGACAAGGCTGCTGCCCACTTGAAG : GGTGGTGCTAAGAAAGTAGTTATTTCTGCTCCTAGCAAGGATGCACCTATGTTTGTTGTTGGTGTCAATGAAAAGGAATACAAGCCAGACCTCAACATCGTTTCTAATGCTAGCTGTACTACTAACTGCCTTGCACCTCTGGCAAAG : GTTATTCATGACAGGTTTGGAATCGTTGAGGGTCTTATGACTACAGTTCACTCCATAACTG : CCACCCAGAAAACTGTTGATGGACCATCAGCTAAGGACTGGAGGGGAGGAAGAGCTGCATCATTCAACATTATCCCCAGCAGCACTGGAGCTGCAAAGGCTGTTGGAAAGGTGCTACCATCATTGAATGGAAAGTTAACAGGAATGTCTTTCCGAGTTCCAACAGTCGATGTCTCTGTGGTTGATCTCACTGTGAGGTTGGAGAAAGAAGCCACCTATGATGAAATCAAGGCTGCTATCAA : GGAGGAGTCTGAAGGAAAATTAAAGGGAATTCTTGGATACACTGAAGATGACGTGGTATCTACAGACTTTCTTGGGGACAACAG : ATCAAGTATCTTTGACGCCAAGGCTGGAATTGCTTTGAGCAAGAACTTTGTGAAGCTTGTTTCTTGGTATGACAACGAAATGGGCTACAG : CACACGAGTGGTCGACTTGATTAAGCACATGGCATCAGTCCAGTAAAGTGGCAGTTCCGAGTATGATGGTGCGTTACTGAGCATATTTAGAAGAGGAAAAAAGCTTTAGAATAAAGTAAAATGAGAAGCTGTTTGACGAGTTTGGAGGTGGCTGTCTGTTTACTATTGTATTTTCATTTGGGGTCTCTTGTTGGATTGTTGTTTTCCCCAATTTTCAAATGTGTCTGCAAAACTGTCTGGATATGTTGTTTTGTCTTGCTATCAATGTATAATAACGTTGGACCC</gDNA_template>
            <first_frame> L  K  R  T  P  F  S  F  S  V  H  K  K  K  S  W  :  A  R  L  R  S  E  S  M  :  V  L  E  E  L  A  D  W  W  P  G  W  L  Y  K  E  M  M  L  S  S  L  L  L  T  I  P  S  S  P  W  N  T  * :   H  T  C  L  S  M  T  V  F  T  V  N  G  R  T  M  S  S  R  L  R  M  R  R  L  F  S  L  V  R  S  L  L  L  Y  L  A  *   : E  T  Q  R  K  S  H  G  L  R  L  E  Q  S  T  S  W  S  Q  L  E  S  S  L  I  K  T  R  L  L  P  T  *  R :   V  V  L  R  K  *  L  F  L  L  L  A  R  M  H  L  C  L  L  L  V  S  M  K  R  N  T  S  Q  T  S  T  S  F  L  M  L  A  V  L  L  T  A  L  H  L  W  Q  R :   L  F  M  T  G  L  E  S  L  R  V  L  *  L  Q  F  T  P  *  L  :  P  P  R  K  L  L  M  D  H  Q  L  R  T  G  G  E  E  E  L  H  H  S  T  L  S  P  A  A  L  E  L  Q  R  L  L  E  R  C  Y  H  H  *  M  E  S  *  Q  E  C  L  S  E  F  Q  Q  S  M  S  L  W  L  I  S  L  *  G  W  R  K  K  P  P  M  M  K  S  R  L  L  S   : R  R  S  L  K  E  N  *  R  E  F  L  D  T  L  K  M  T  W  Y  L  Q  T  F  L  G  T  T   : D  Q  V  S  L  T  P  R  L  E  L  L  *  A  R  T  L  *  S  L  F  L  G  M  T  T  K  W  A  T   : A  H  E  W  S  T  *  L  S  T  W  H  Q  S  S  K  V  A  V  P  S  M  M  V  R  Y  *  A  Y  L  E  E  E  K  S  F  R  I  K  *  N  E  K  L  F  D  E  F  G  G  G  C  L  F  T  I  V  F  S  F  G  V  S  C  W  I  V  V  F  P  N  F  Q  M  C  L  Q  N  C  L  D  M  L  F  C  L  A  I  N  V  *  *  R  W  T  </first_frame>
            <second_frame>  *  N  E  L  H  F  P  S  Q  F  T  K  K  N  H  G :   Q  D  *  D  R  N  Q  W :   F  W  K  N  W  P  I  G  G  Q  G  G  S  T  K  R  *  C  *  A  R  C  C  *  R  S  L  H  H  R  G  I  H   : D  I  H  V  *  V  *  Q  C  S  R  S  M  E  E  Q  *  A  Q  G  *  G  *  E  D  S  S  L  W  *  E  A  C  Y  C  I  W  H  K  :  K  P  R  G  N  P  M  G  *  G  W  S  R  V  H  R  G  V  N  W  S  L  H  *  *  R  Q  G  C  C  P  L  E   : G  W  C  *  E  S  S  Y  F  C  S  *  Q  G  C  T  Y  V  C  C  W  C  Q  *  K  G  I  Q  A  R  P  Q  H  R  F  *  C  *  L  Y  Y  *  L  P  C  T  S  G  K   : G  Y  S  *  Q  V  W  N  R  *  G  S  Y  D  Y  S  S  L  H  N  C :   H  P  E  N  C  *  W  T  I  S  *  G  L  E  G  R  K  S  C  I  I  Q  H  Y  P  Q  Q  H  W  S  C  K  G  C  W  K  G  A  T  I  I  E  W  K  V  N  R  N  V  F  P  S  S  N  S  R  C  L  C  G  *  S  H  C  E  V  G  E  R  S  H  L  *  *  N  Q  G  C  Y  Q  :  G  G  V  *  R  K  I  K  G  N  S  W  I  H  *  R  *  R  G  I  Y  R  L  S  W  G  Q  Q  :  I  K  Y  L  *  R  Q  G  W  N  C  F  E  Q  E  L  C  E  A  C  F  L  V  *  Q  R  N  G  L  Q  :  H  T  S  G  R  L  D  *  A  H  G  I  S  P  V  K  W  Q  F  R  V  *  W  C  V  T  E  H  I  *  K  R  K  K  A  L  E  *  S  K  M  R  S  C  L  T  S  L  E  V  A  V  C  L  L  L  Y  F  H  L  G  S  L  V  G  L  L  F  S  P  I  F  K  C  V  C  K  T  V  W  I  C  C  F  V  L  L  S  M  Y  N  N  V  G  P </second_frame>
            <third_frame>   K  T  N  S  I  F  L  L  S  S  Q  K  K  I  M   : G  K  I  K  I  G  I  N   : G  F  G  R  I  G  R  L  V  A  R  V  A  L  Q  R  D  D  V  E  L  V  A  V  N  D  P  F  I  T  V  E  Y  M  :  T  Y  M  F  K  Y  D  S  V  H  G  Q  W  K  N  N  E  L  K  V  K  D  E  K  T  L  L  F  G  E  K  P  V  T  V  F  G  I  R :   N  P  E  E  I  P  W  A  E  A  G  A  E  Y  I  V  E  S  T  G  V  F  T  D  K  D  K  A  A  A  H  L  K  :  G  G  A  K  K  V  V  I  S  A  P  S  K  D  A  P  M  F  V  V  G  V  N  E  K  E  Y  K  P  D  L  N  I  V  S  N  A  S  C  T  T  N  C  L  A  P  L  A  K  :  V  I  H  D  R  F  G  I  V  E  G  L  M  T  T  V  H  S  I  T   : A  T  Q  K  T  V  D  G  P  S  A  K  D  W  R  G  G  R  A  A  S  F  N  I  I  P  S  S  T  G  A  A  K  A  V  G  K  V  L  P  S  L  N  G  K  L  T  G  M  S  F  R  V  P  T  V  D  V  S  V  V  D  L  T  V  R  L  E  K  E  A  T  Y  D  E  I  K  A  A  I  K :   E  E  S  E  G  K  L  K  G  I  L  G  Y  T  E  D  D  V  V  S  T  D  F  L  G  D  N  R :   S  S  I  F  D  A  K  A  G  I  A  L  S  K  N  F  V  K  L  V  S  W  Y  D  N  E  M  G  Y  S :   T  R  V  V  D  L  I  K  H  M  A  S  V  Q  *  S  G  S  S  E  Y  D  G  A  L  L  S  I  F  R  R  G  K  K  L  *  N  K  V  K  *  E  A  V  *  R  V  W  R  W  L  S  V  Y  Y  C  I  F  I  W  G  L  L  L  D  C  C  F  P  Q  F  S  N  V  S  A  K  L  S  G  Y  V  V  L  S  C  Y  Q  C  I  I  T  L  D   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0127C05.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="24956" stop="25001"/>
                    <exon start="25131" stop="25154"/>
                    <exon start="25274" stop="25374"/>
                    <exon start="26282" stop="26397"/>
                    <exon start="26485" stop="26584"/>
                    <exon start="27125" stop="27271"/>
                    <exon start="27359" stop="27419"/>
                    <exon start="27494" stop="27734"/>
                    <exon start="28004" stop="28087"/>
                    <exon start="28266" stop="28355"/>
                    <exon start="28499" stop="28544"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1053</number_coding_nucleotides>
                  <number_encoded_amino_acids>351</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KTNSIFLLSSQKKIMGKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFITVEYMTYMFKYDSVHGQWKNNELKVKDEKTLLFGEKPVTVFGIRNPEEIPWAEAGAEYIVESTGVFTDKDKAAAHLKGGAKKVVISAPSKDAPMFVVGVNEKEYKPDLNIVSNASCTTNCLAPLAKVIHDRFGIVEGLMTTVHSITATQKTVDGPSAKDWRGGRAASFNIIPSSTGAAKAVGKVLPSLNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYDEIKAAIKEESEGKLKGILGYTEDDVVSTDFLGDNRSSIFDAKAGIALSKNFVKLVSWYDNEMGYSTRVVDLIKHMASVQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="24968" e_stop="25001"/>
            <exon e_start="25131" e_stop="25154"/>
            <exon e_start="25274" e_stop="25374"/>
            <exon e_start="26282" e_stop="26392"/>
            <exon e_start="26528" e_stop="26584"/>
            <exon e_start="27125" e_stop="27271"/>
            <exon e_start="27359" e_stop="27419"/>
            <exon e_start="27494" e_stop="27539"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.989" acc_prob="0.993" e_score="0.971"/>
          <exon-intron don_prob="0.976" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.987" e_score="1.000"/>
          <exon-only e_score="0.957"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.971">
            <gDNA_exon_boundary e_start="24968" e_stop="25001" e_length="34"/>
          </exon>
          <intron i_serial="1" don_prob="0.989" acc_prob="0.993">
            <gDNA_intron_boundary i_start="25002" i_stop="25130" i_length="129"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="25131" e_stop="25154" e_length="24"/>
          </exon>
          <intron i_serial="2" don_prob="0.976" acc_prob="1.000">
            <gDNA_intron_boundary i_start="25155" i_stop="25273" i_length="119"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="25274" e_stop="25374" e_length="101"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.991">
            <gDNA_intron_boundary i_start="25375" i_stop="26281" i_length="907"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="26282" e_stop="26392" e_length="111"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="26393" i_stop="26527" i_length="135"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="26528" e_stop="26584" e_length="57"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="26585" i_stop="27124" i_length="540"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="27125" e_stop="27271" e_length="147"/>
          </exon>
          <intron i_serial="6" don_prob="0.997" acc_prob="1.000">
            <gDNA_intron_boundary i_start="27272" i_stop="27358" i_length="87"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="27359" e_stop="27419" e_length="61"/>
          </exon>
          <intron i_serial="7" don_prob="0.992" acc_prob="0.987">
            <gDNA_intron_boundary i_start="27420" i_stop="27493" i_length="74"/>
          </intron>
          <exon e_serial="8" e_score="0.957">
            <gDNA_exon_boundary e_start="27494" e_stop="27539" e_length="46"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24968" stop="25001"/>
              <exon start="25131" stop="25154"/>
              <exon start="25274" stop="25374"/>
              <exon start="26282" stop="26392"/>
              <exon start="26528" stop="26584"/>
              <exon start="27125" stop="27271"/>
              <exon start="27359" stop="27419"/>
              <exon start="27494" stop="27539"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335494" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTTTCCTTCTCAGTTCACAAAAAAAAATCATGG : GCAAGATTAAGATCGGAATCAATG : GTTTTGGAAGAATTGGCCGATTGGTGGCCAGGGTGGCTCTACAAAGAGATGATGTTGAGCTCGTTGCTGTTAACGATCCCTTCATCACCGTGGAATACATG : ACATACATGTTTAAGTATGACAGTGTTCACGGTCAATGGAAGAACAATGAGCTCAAGGTTAAGGATGAGAAGACTCTTCTCTTTGGTGAGAAGCCTGTTACTGTATTTGGC : ATCGTGGAGTCAACTGGAGTCTTCACTGATAAAGACAAGGCTGCTGCCCACTTGAAG : GGTGGTGCTAAGAAAGTAGTTATTTCTGCTCCTAGCAAGGATGCACCTATGTTTGTTGTTGGTGTCAATGAAAAGGAATACAAGCCAGACCTCAACATCGTTTCTAATGCTAGCTGTACTACTAACTGCCTTGCACCTCTGGCAAAG : GTTATTCATGACAGGTTTGGAATCGTTGAGGGTCTTATGACTACAGTTCACTCCATAACTG : CCACCCAGAAAACTGTTGATGGACCATCAGCTAAGGACTGGAGGGG</gDNA_template>
            <first_frame> I  F  L  L  S  S  Q  K  K  I  M   : G  K  I  K  I  G  I  N   : G  F  G  R  I  G  R  L  V  A  R  V  A  L  Q  R  D  D  V  E  L  V  A  V  N  D  P  F  I  T  V  E  Y  M  :  T  Y  M  F  K  Y  D  S  V  H  G  Q  W  K  N  N  E  L  K  V  K  D  E  K  T  L  L  F  G  E  K  P  V  T  V  F  G  :  I  V  E  S  T  G  V  F  T  D  K  D  K  A  A  A  H  L  K  :  G  G  A  K  K  V  V  I  S  A  P  S  K  D  A  P  M  F  V  V  G  V  N  E  K  E  Y  K  P  D  L  N  I  V  S  N  A  S  C  T  T  N  C  L  A  P  L  A  K  :  V  I  H  D  R  F  G  I  V  E  G  L  M  T  T  V  H  S  I  T   : A  T  Q  K  T  V  D  G  P  S  A  K  D  W  R   </first_frame>
            <second_frame>  F  S  F  S  V  H  K  K  K  S  W  :  A  R  L  R  S  E  S  M  :  V  L  E  E  L  A  D  W  W  P  G  W  L  Y  K  E  M  M  L  S  S  L  L  L  T  I  P  S  S  P  W  N  T  * :   H  T  C  L  S  M  T  V  F  T  V  N  G  R  T  M  S  S  R  L  R  M  R  R  L  F  S  L  V  R  S  L  L  L  Y  L  A :   S  W  S  Q  L  E  S  S  L  I  K  T  R  L  L  P  T  *  R :   V  V  L  R  K  *  L  F  L  L  L  A  R  M  H  L  C  L  L  L  V  S  M  K  R  N  T  S  Q  T  S  T  S  F  L  M  L  A  V  L  L  T  A  L  H  L  W  Q  R :   L  F  M  T  G  L  E  S  L  R  V  L  *  L  Q  F  T  P  *  L  :  P  P  R  K  L  L  M  D  H  Q  L  R  T  G  G  </second_frame>
            <third_frame>   F  P  S  Q  F  T  K  K  N  H  G :   Q  D  *  D  R  N  Q  W :   F  W  K  N  W  P  I  G  G  Q  G  G  S  T  K  R  *  C  *  A  R  C  C  *  R  S  L  H  H  R  G  I  H   : D  I  H  V  *  V  *  Q  C  S  R  S  M  E  E  Q  *  A  Q  G  *  G  *  E  D  S  S  L  W  *  E  A  C  Y  C  I  W   : H  R  G  V  N  W  S  L  H  *  *  R  Q  G  C  C  P  L  E   : G  W  C  *  E  S  S  Y  F  C  S  *  Q  G  C  T  Y  V  C  C  W  C  Q  *  K  G  I  Q  A  R  P  Q  H  R  F  *  C  *  L  Y  Y  *  L  P  C  T  S  G  K   : G  Y  S  *  Q  V  W  N  R  *  G  S  Y  D  Y  S  S  L  H  N  C :   H  P  E  N  C  *  W  T  I  S  *  G  L  E  G </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0127C05.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="24968" stop="25001"/>
                    <exon start="25131" stop="25154"/>
                    <exon start="25274" stop="25374"/>
                    <exon start="26282" stop="26392"/>
                    <exon start="26528" stop="26584"/>
                    <exon start="27125" stop="27271"/>
                    <exon start="27359" stop="27419"/>
                    <exon start="27494" stop="27537"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>579</number_coding_nucleotides>
                  <number_encoded_amino_acids>193</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IFLLSSQKKIMGKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFITVEYMTYMFKYDSVHGQWKNNELKVKDEKTLLFGEKPVTVFGIVESTGVFTDKDKAAAHLKGGAKKVVISAPSKDAPMFVVGVNEKEYKPDLNIVSNASCTTNCLAPLAKVIHDRFGIVEGLMTTVHSITATQKTVDGPSAKDWR</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="33852" PGL_stop="39397"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="33852" e_stop="34127"/>
            <exon e_start="34592" e_stop="34734"/>
            <exon e_start="35374" e_stop="35427"/>
            <exon e_start="36214" e_stop="36294"/>
            <exon e_start="36390" e_stop="36435"/>
            <exon e_start="36709" e_stop="36803"/>
            <exon e_start="36925" e_stop="36957"/>
            <exon e_start="37926" e_stop="38060"/>
            <exon e_start="38267" e_stop="38360"/>
            <exon e_start="38796" e_stop="38878"/>
            <exon e_start="38983" e_stop="39397"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.900" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.440" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.958" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.753" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.991" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="33852" e_stop="34127" e_length="276"/>
          </exon>
          <intron i_serial="1" don_prob="0.900" acc_prob="1.000">
            <gDNA_intron_boundary i_start="34128" i_stop="34591" i_length="464"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="34592" e_stop="34734" e_length="143"/>
          </exon>
          <intron i_serial="2" don_prob="0.991" acc_prob="0.995">
            <gDNA_intron_boundary i_start="34735" i_stop="35373" i_length="639"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="35374" e_stop="35427" e_length="54"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.983">
            <gDNA_intron_boundary i_start="35428" i_stop="36213" i_length="786"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="36214" e_stop="36294" e_length="81"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.992">
            <gDNA_intron_boundary i_start="36295" i_stop="36389" i_length="95"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="36390" e_stop="36435" e_length="46"/>
          </exon>
          <intron i_serial="5" don_prob="0.995" acc_prob="0.999">
            <gDNA_intron_boundary i_start="36436" i_stop="36708" i_length="273"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="36709" e_stop="36803" e_length="95"/>
          </exon>
          <intron i_serial="6" don_prob="0.440" acc_prob="1.000">
            <gDNA_intron_boundary i_start="36804" i_stop="36924" i_length="121"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="36925" e_stop="36957" e_length="33"/>
          </exon>
          <intron i_serial="7" don_prob="0.999" acc_prob="0.958">
            <gDNA_intron_boundary i_start="36958" i_stop="37925" i_length="968"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="37926" e_stop="38060" e_length="135"/>
          </exon>
          <intron i_serial="8" don_prob="0.981" acc_prob="1.000">
            <gDNA_intron_boundary i_start="38061" i_stop="38266" i_length="206"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="38267" e_stop="38360" e_length="94"/>
          </exon>
          <intron i_serial="9" don_prob="0.753" acc_prob="0.997">
            <gDNA_intron_boundary i_start="38361" i_stop="38795" i_length="435"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="38796" e_stop="38878" e_length="83"/>
          </exon>
          <intron i_serial="10" don_prob="0.999" acc_prob="0.991">
            <gDNA_intron_boundary i_start="38879" i_stop="38982" i_length="104"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="38983" e_stop="39397" e_length="415"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33852" stop="34127"/>
              <exon start="34592" stop="34734"/>
              <exon start="35374" stop="35427"/>
              <exon start="36214" stop="36294"/>
              <exon start="36390" stop="36435"/>
              <exon start="36709" stop="36803"/>
              <exon start="36925" stop="36957"/>
              <exon start="37926" stop="38060"/>
              <exon start="38267" stop="38360"/>
              <exon start="38796" stop="38878"/>
              <exon start="38983" stop="39397"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U315110" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAGGCTGGCACATTGTTTTCATCGGAACTTTTACAATAAATACGCTCTACTCTAACTCTGCACCCTCTACTGATCCATTTACACACCTGGCAACTTTACTCCGTTCAATGGCTACTCTCACCTTCAATTCCGTCGCCGCCACCTCCAAAATCCGATCCTCCGTCGCCGCCGCAAACTCCTCCGTCCGTCGCCAGCTGTCACATGTCCGCCTTCCGTCTTCTCCTATTCAGCCATCATCTGTCTTGCAGTGCCGCTGGTCTTCTTCCGCCTCTTCAG : GTGTGAGAGCTCAGGTGACAACCACTGAACAAGTTGGAGTTAAGGCTGCTGCAAAAGTTGAAGCTCCGGTTGTTATTGTCACTGGAGCTTCTAGAGGAATAGGGAAGGCAATTGCGTTGGCTTTGGGAAAGGCTGGTTGTAAG : GTCCTTGTGAACTATGCCAGATCTTCAAAGGAGGCAGAAGAAGTTTCCAAAGAG : ATTGAAGCATGTGGTGGCGAAGCCTTGGCTTTTGGAGGCGACGTTTCAAAAGAAGAAGATGTAGAGTCCATGATGAAAACT : GTGGTTGATCGATGGGGAACAGTTGATATCTTGATCAATAATGCAG : GTATCACGCGTGATACCTTGTTGATGAGAATGAAGAAGTCTCAGTGGCAGGAGGTTATTGATTTGAATCTTACAGGAGTTTTTCTCTCCACACAG : GCTGCAGCTAAAATCATGATGAAAAAGAAAAAG : GGAAGAATCATCAACATATCTTCTGTTGTTGGTTTAGTTGGCAATGCCGGGCAAGCCAACTATAGTGCTGCTAAAGCAGGAGTCATTGGCTTAACCAAGAGTGTTGCAAAAGAATATGCCAGCAGGAATATTACT : GTTAATGCTATTGCCCCTGGATTTATTGCATCAGATATGACTGCCCAGCTAAGTGAAGACATTGAAAAGAAACTTTTACAAAGTATTCCGTTAG : GACGCTATGGTCAACCTGAAGATGTTGCTGGACTAGTGGAATTCCTAGCACTCAGTCCCGCAGCCAGCTATATTACTGGACAG : GTTTTGACTATCGATGGTGGGATGGTAATGTAGAAGTTTACCCCATAGTTTGCTCATGAAGAAAGATTGGAAGTGTGATCACTTATATTATACCTTGACTGTAGCCTTGCTTCGTCCAATATCTGCGTAAAAGGAACTTGATAATTTGGTGGTAGAAGATGACCTTACTCATCATTTTTCTGCATTTTCCCCTCTTCTTTTTCCGTTTTCTTAGAAGCATTTTTGAACCAGGGTTTGATCATTTTGTTGTGGTTTCTATGTTAAAGCTGAGTAAACACTATTTGACGCACTTCCTTTGGTCAAAGCATCCTCATGTACTGCCATGAAAGCTTGCTGCTCTTGGCTTAACCTCTGAGAACGGGAGATTGATTAATCAATGGCATAATTTAGCTCATGCTTATTTACAGTTGAAGTA</gDNA_template>
            <first_frame> E  A  G  T  L  F  S  S  E  L  L  Q  *  I  R  S  T  L  T  L  H  P  L  L  I  H  L  H  T  W  Q  L  Y  S  V  Q  W  L  L  S  P  S  I  P  S  P  P  P  P  K  S  D  P  P  S  P  P  Q  T  P  P  S  V  A  S  C  H  M  S  A  F  R  L  L  L  F  S  H  H  L  S  C  S  A  A  G  L  L  P  P  L  Q  :  V  *  E  L  R  *  Q  P  L  N  K  L  E  L  R  L  L  Q  K  L  K  L  R  L  L  L  S  L  E  L  L  E  E  *  G  R  Q  L  R  W  L  W  E  R  L  V  V  R :   S  L  *  T  M  P  D  L  Q  R  R  Q  K  K  F  P  K  R :   L  K  H  V  V  A  K  P  W  L  L  E  A  T  F  Q  K  K  K  M  *  S  P  *  *  K  L :   W  L  I  D  G  E  Q  L  I  S  *  S  I  M  Q  :  V  S  R  V  I  P  C  *  *  E  *  R  S  L  S  G  R  R  L  L  I  *  I  L  Q  E  F  F  S  P  H  R :   L  Q  L  K  S  *  *  K  R  K  R :   E  E  S  S  T  Y  L  L  L  L  V  *  L  A  M  P  G  K  P  T  I  V  L  L  K  Q  E  S  L  A  *  P  R  V  L  Q  K  N  M  P  A  G  I  L  L :   L  M  L  L  P  L  D  L  L  H  Q  I  *  L  P  S  *  V  K  T  L  K  R  N  F  Y  K  V  F  R  *  :  D  A  M  V  N  L  K  M  L  L  D  *  W  N  S  *  H  S  V  P  Q  P  A  I  L  L  D  R :   F  *  L  S  M  V  G  W  *  C  R  S  L  P  H  S  L  L  M  K  K  D  W  K  C  D  H  L  Y  Y  T  L  T  V  A  L  L  R  P  I  S  A  *  K  E  L  D  N  L  V  V  E  D  D  L  T  H  H  F  S  A  F  S  P  L  L  F  P  F  S  *  K  H  F  *  T  R  V  *  S  F  C  C  G  F  Y  V  K  A  E  *  T  L  F  D  A  L  P  L  V  K  A  S  S  C  T  A  M  K  A  C  C  S  W  L  N  L  *  E  R  E  I  D  *  S  M  A  *  F  S  S  C  L  F  T  V  E  V </first_frame>
            <second_frame>  R  L  A  H  C  F  H  R  N  F  Y  N  K  Y  A  L  L  *  L  C  T  L  Y  *  S  I  Y  T  P  G  N  F  T  P  F  N  G  Y  S  H  L  Q  F  R  R  R  H  L  Q  N  P  I  L  R  R  R  R  K  L  L  R  P  S  P  A  V  T  C  P  P  S  V  F  S  Y  S  A  I  I  C  L  A  V  P  L  V  F  F  R  L  F  R :   C  E  S  S  G  D  N  H  *  T  S  W  S  *  G  C  C  K  S  *  S  S  G  C  Y  C  H  W  S  F  *  R  N  R  E  G  N  C  V  G  F  G  K  G  W  L  *   : G  P  C  E  L  C  Q  I  F  K  G  G  R  R  S  F  Q  R   : D  *  S  M  W  W  R  S  L  G  F  W  R  R  R  F  K  R  R  R  C  R  V  H  D  E  N   : C  G  *  S  M  G  N  S  *  Y  L  D  Q  *  C  R :   Y  H  A  *  Y  L  V  D  E  N  E  E  V  S  V  A  G  G  Y  *  F  E  S  Y  R  S  F  S  L  H  T   : G  C  S  *  N  H  D  E  K  E  K   : G  K  N  H  Q  H  I  F  C  C  W  F  S  W  Q  C  R  A  S  Q  L  *  C  C  *  S  R  S  H  W  L  N  Q  E  C  C  K  R  I  C  Q  Q  E  Y  Y   : C  *  C  Y  C  P  W  I  Y  C  I  R  Y  D  C  P  A  K  *  R  H  *  K  E  T  F  T  K  Y  S  V  R :   T  L  W  S  T  *  R  C  C  W  T  S  G  I  P  S  T  Q  S  R  S  Q  L  Y  Y  W  T   : G  F  D  Y  R  W  W  D  G  N  V  E  V  Y  P  I  V  C  S  *  R  K  I  G  S  V  I  T  Y  I  I  P  *  L  *  P  C  F  V  Q  Y  L  R  K  R  N  L  I  I  W  W  *  K  M  T  L  L  I  I  F  L  H  F  P  L  F  F  F  R  F  L  R  S  I  F  E  P  G  F  D  H  F  V  V  V  S  M  L  K  L  S  K  H  Y  L  T  H  F  L  W  S  K  H  P  H  V  L  P  *  K  L  A  A  L  G  L  T  S  E  N  G  R  L  I  N  Q  W  H  N  L  A  H  A  Y  L  Q  L  K   </second_frame>
            <third_frame>   G  W  H  I  V  F  I  G  T  F  T  I  N  T  L  Y  S  N  S  A  P  S  T  D  P  F  T  H  L  A  T  L  L  R  S  M  A  T  L  T  F  N  S  V  A  A  T  S  K  I  R  S  S  V  A  A  A  N  S  S  V  R  R  Q  L  S  H  V  R  L  P  S  S  P  I  Q  P  S  S  V  L  Q  C  R  W  S  S  S  A  S  S   : G  V  R  A  Q  V  T  T  T  E  Q  V  G  V  K  A  A  A  K  V  E  A  P  V  V  I  V  T  G  A  S  R  G  I  G  K  A  I  A  L  A  L  G  K  A  G  C  K  :  V  L  V  N  Y  A  R  S  S  K  E  A  E  E  V  S  K  E  :  I  E  A  C  G  G  E  A  L  A  F  G  G  D  V  S  K  E  E  D  V  E  S  M  M  K  T  :  V  V  D  R  W  G  T  V  D  I  L  I  N  N  A   : G  I  T  R  D  T  L  L  M  R  M  K  K  S  Q  W  Q  E  V  I  D  L  N  L  T  G  V  F  L  S  T  Q  :  A  A  A  K  I  M  M  K  K  K  K  :  G  R  I  I  N  I  S  S  V  V  G  L  V  G  N  A  G  Q  A  N  Y  S  A  A  K  A  G  V  I  G  L  T  K  S  V  A  K  E  Y  A  S  R  N  I  T  :  V  N  A  I  A  P  G  F  I  A  S  D  M  T  A  Q  L  S  E  D  I  E  K  K  L  L  Q  S  I  P  L   : G  R  Y  G  Q  P  E  D  V  A  G  L  V  E  F  L  A  L  S  P  A  A  S  Y  I  T  G  Q  :  V  L  T  I  D  G  G  M  V  M  *  K  F  T  P  *  F  A  H  E  E  R  L  E  V  *  S  L  I  L  Y  L  D  C  S  L  A  S  S  N  I  C  V  K  G  T  *  *  F  G  G  R  R  *  P  Y  S  S  F  F  C  I  F  P  S  S  F  S  V  F  L  E  A  F  L  N  Q  G  L  I  I  L  L  W  F  L  C  *  S  *  V  N  T  I  *  R  T  S  F  G  Q  S  I  L  M  Y  C  H  E  S  L  L  L  L  A  *  P  L  R  T  G  D  *  L  I  N  G  I  I  *  L  M  L  I  Y  S  *  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0127C05.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="33854" stop="34127"/>
                    <exon start="34592" stop="34734"/>
                    <exon start="35374" stop="35427"/>
                    <exon start="36214" stop="36294"/>
                    <exon start="36390" stop="36435"/>
                    <exon start="36709" stop="36803"/>
                    <exon start="36925" stop="36957"/>
                    <exon start="37926" stop="38060"/>
                    <exon start="38267" stop="38360"/>
                    <exon start="38796" stop="38878"/>
                    <exon start="38983" stop="39015"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1068</number_coding_nucleotides>
                  <number_encoded_amino_acids>356</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GWHIVFIGTFTINTLYSNSAPSTDPFTHLATLLRSMATLTFNSVAATSKIRSSVAAANSSVRRQLSHVRLPSSPIQPSSVLQCRWSSSASSGVRAQVTTTEQVGVKAAAKVEAPVVIVTGASRGIGKAIALALGKAGCKVLVNYARSSKEAEEVSKEIEACGGEALAFGGDVSKEEDVESMMKTVVDRWGTVDILINNAGITRDTLLMRMKKSQWQEVIDLNLTGVFLSTQAAAKIMMKKKKGRIINISSVVGLVGNAGQANYSAAKAGVIGLTKSVAKEYASRNITVNAIAPGFIASDMTAQLSEDIEKKLLQSIPLGRYGQPEDVAGLVEFLALSPAASYITGQVLTIDGGMVM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="40447" PGL_stop="42115"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="40447" e_stop="40502"/>
            <exon e_start="41180" e_stop="42115"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.970" acc_prob="0.982" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="40447" e_stop="40502" e_length="56"/>
          </exon>
          <intron i_serial="1" don_prob="0.970" acc_prob="0.982">
            <gDNA_intron_boundary i_start="40503" i_stop="41179" i_length="677"/>
          </intron>
          <exon e_serial="2" e_score="0.998">
            <gDNA_exon_boundary e_start="41180" e_stop="42115" e_length="936"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40447" stop="40502"/>
              <exon start="41180" stop="42115"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U325386" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCTCCACTTCTGTAGACCTTCTCCATATCTTTCCTCTGTGATTTCAGCGGCCAACT : TTCCTGCTACGACCATCACTGTCAGCTATTGCCCCTGGGAACCATCAAGAAAGAAGCTATTTTTAGCAGGGGGTTCTCACTTTATGGTTAAAATCAAATGCCAATGTGATTGAAACGTAATGTTTGAAGTGGGATGGGATCTAGCAACTTCACCTCCTTGAAATTTAATAATCCTTTTTTTTGTTCGTTAATCAAGCTGTGGCAGGTTAACTCTTATGGTTTCCGTGGACTAGTGATGCTGAATATATAATTTCAGGGCAATTCTTTCCTTAAGCAGTCCTGATGAGTAAAGTTGGTTTTGTTTCTGATATCAACAATGAACTTCATATCCATTCTGTGGAAACAGAGGATCACTAGTGCAATTCATCAAACAATTGTTATATCTTTGTCCAAACAAACTATTCATTCATGTCAAGTTTATTGTTTGAAAACATCGGATGCAAATTTTACTTCAGAGAAGTCAGAATCAGAAAAGGAAGAAAGGTTGGTAGATCAGGGAATGGTGACAACAAGGAACAGCTTAAGTCAAAGAATTGAAAGTGTACCCATAGGAGAGTCCATTGGATCCACTTTCCAAAGCTGGATGGGTGATGGTTTACCTATTCATAGAGGTGACATTTTCCACACTATGAATCGTTTGCGCAAACTCAAATTGAACAAGCGTGCTCTTGAGGTTCTTTTACTCTGTCCTTTCTTGCCAAATTTGAAAATGGGCATTTACCTATTATGAAGTACATGAAGTATTCAACCTACTGTGAACACCACTAGGGTGCACTTTACATGTTTACATAAGATATCTAAGGGTAGTAGTAGTGAATGTAGTACTACTACTAGTGTTATGTTTCAGGTAAAGCTGGTACAGAGTGTTATGTTCCATATTAGTTATTCAGGCATTTTCAATATACGAATTTCCTCTATTCCTTCTCAAAAAATATA</gDNA_template>
            <first_frame> P  P  L  L  *  T  F  S  I  S  F  L  C  D  F  S  G  Q  L :   S  C  Y  D  H  H  C  Q  L  L  P  L  G  T  I  K  K  E  A  I  F  S  R  G  F  S  L  Y  G  *  N  Q  M  P  M  *  L  K  R  N  V  *  S  G  M  G  S  S  N  F  T  S  L  K  F  N  N  P  F  F  C  S  L  I  K  L  W  Q  V  N  S  Y  G  F  R  G  L  V  M  L  N  I  *  F  Q  G  N  S  F  L  K  Q  S  *  *  V  K  L  V  L  F  L  I  S  T  M  N  F  I  S  I  L  W  K  Q  R  I  T  S  A  I  H  Q  T  I  V  I  S  L  S  K  Q  T  I  H  S  C  Q  V  Y  C  L  K  T  S  D  A  N  F  T  S  E  K  S  E  S  E  K  E  E  R  L  V  D  Q  G  M  V  T  T  R  N  S  L  S  Q  R  I  E  S  V  P  I  G  E  S  I  G  S  T  F  Q  S  W  M  G  D  G  L  P  I  H  R  G  D  I  F  H  T  M  N  R  L  R  K  L  K  L  N  K  R  A  L  E  V  L  L  L  C  P  F  L  P  N  L  K  M  G  I  Y  L  L  *  S  T  *  S  I  Q  P  T  V  N  T  T  R  V  H  F  T  C  L  H  K  I  S  K  G  S  S  S  E  C  S  T  T  T  S  V  M  F  Q  V  K  L  V  Q  S  V  M  F  H  I  S  Y  S  G  I  F  N  I  R  I  S  S  I  P  S  Q  K  I   </first_frame>
            <second_frame>  L  H  F  C  R  P  S  P  Y  L  S  S  V  I  S  A  A  N   : F  P  A  T  T  I  T  V  S  Y  C  P  W  E  P  S  R  K  K  L  F  L  A  G  G  S  H  F  M  V  K  I  K  C  Q  C  D  *  N  V  M  F  E  V  G  W  D  L  A  T  S  P  P  *  N  L  I  I  L  F  F  V  R  *  S  S  C  G  R  L  T  L  M  V  S  V  D  *  *  C  *  I  Y  N  F  R  A  I  L  S  L  S  S  P  D  E  *  S  W  F  C  F  *  Y  Q  Q  *  T  S  Y  P  F  C  G  N  R  G  S  L  V  Q  F  I  K  Q  L  L  Y  L  C  P  N  K  L  F  I  H  V  K  F  I  V  *  K  H  R  M  Q  I  L  L  Q  R  S  Q  N  Q  K  R  K  K  G  W  *  I  R  E  W  *  Q  Q  G  T  A  *  V  K  E  L  K  V  Y  P  *  E  S  P  L  D  P  L  S  K  A  G  W  V  M  V  Y  L  F  I  E  V  T  F  S  T  L  *  I  V  C  A  N  S  N  *  T  S  V  L  L  R  F  F  Y  S  V  L  S  C  Q  I  *  K  W  A  F  T  Y  Y  E  V  H  E  V  F  N  L  L  *  T  P  L  G  C  T  L  H  V  Y  I  R  Y  L  R  V  V  V  V  N  V  V  L  L  L  V  L  C  F  R  *  S  W  Y  R  V  L  C  S  I  L  V  I  Q  A  F  S  I  Y  E  F  P  L  F  L  L  K  K  Y  </second_frame>
            <third_frame>   S  T  S  V  D  L  L  H  I  F  P  L  *  F  Q  R  P  T  :  F  L  L  R  P  S  L  S  A  I  A  P  G  N  H  Q  E  R  S  Y  F  *  Q  G  V  L  T  L  W  L  K  S  N  A  N  V  I  E  T  *  C  L  K  W  D  G  I  *  Q  L  H  L  L  E  I  *  *  S  F  F  L  F  V  N  Q  A  V  A  G  *  L  L  W  F  P  W  T  S  D  A  E  Y  I  I  S  G  Q  F  F  P  *  A  V  L  M  S  K  V  G  F  V  S  D  I  N  N  E  L  H  I  H  S  V  E  T  E  D  H  *  C  N  S  S  N  N  C  Y  I  F  V  Q  T  N  Y  S  F  M  S  S  L  L  F  E  N  I  G  C  K  F  Y  F  R  E  V  R  I  R  K  G  R  K  V  G  R  S  G  N  G  D  N  K  E  Q  L  K  S  K  N  *  K  C  T  H  R  R  V  H  W  I  H  F  P  K  L  D  G  *  W  F  T  Y  S  *  R  *  H  F  P  H  Y  E  S  F  A  Q  T  Q  I  E  Q  A  C  S  *  G  S  F  T  L  S  F  L  A  K  F  E  N  G  H  L  P  I  M  K  Y  M  K  Y  S  T  Y  C  E  H  H  *  G  A  L  Y  M  F  T  *  D  I  *  G  *  *  *  *  M  *  Y  Y  Y  *  C  Y  V  S  G  K  A  G  T  E  C  Y  V  P  Y  *  L  F  R  H  F  Q  Y  T  N  F  L  Y  S  F  S  K  N  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0127C05.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41466" stop="41909"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>441</number_coding_nucleotides>
                  <number_encoded_amino_acids>147</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VKLVLFLISTMNFISILWKQRITSAIHQTIVISLSKQTIHSCQVYCLKTSDANFTSEKSESEKEERLVDQGMVTTRNSLSQRIESVPIGESIGSTFQSWMGDGLPIHRGDIFHTMNRLRKLKLNKRALEVLLLCPFLPNLKMGIYLL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0127C05.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41919" stop="42113"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SIQPTVNTTRVHFTCLHKISKGSSSECSTTTSVMFQVKLVQSVMFHISYSGIFNIRISSIPSQKI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="46192" PGL_stop="48044"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="46192" e_stop="46402"/>
            <exon e_start="47216" e_stop="47329"/>
            <exon e_start="47431" e_stop="47767"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.966" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="46192" e_stop="46402" e_length="211"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.998">
            <gDNA_intron_boundary i_start="46403" i_stop="47215" i_length="813"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="47216" e_stop="47329" e_length="114"/>
          </exon>
          <intron i_serial="2" don_prob="0.966" acc_prob="0.996">
            <gDNA_intron_boundary i_start="47330" i_stop="47430" i_length="101"/>
          </intron>
          <exon e_serial="3" e_score="0.988">
            <gDNA_exon_boundary e_start="47431" e_stop="47767" e_length="337"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46192" stop="46402"/>
              <exon start="47216" stop="47329"/>
              <exon start="47431" stop="47767"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U330029" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATAAATTTTCCATTCGTTCACGTAACTAAACCACTTTCATAATGAGCCCTAGCTGCTGCTACTATTAATGGCACAATTCCTTTTCTGGAAAAACAACAAAGTATCCACATTTATTTCAACACTTCTCATAAAAGAGAAATTGAAATTTTAATTTTGCATTTCCCCAATTTCATCAACAATCGCAGAAGCTTTTTTCTGCGCAGTATTCGAG : AGGCAATTGAATTACAAAATCATGAGTTACTTCCGGGCATTCTTGAACAGTCCTGTTGGCCCTAAAACAACTCACTTTTGGGGTCCTATGGCCAACTGGGGCTTTGTCATTTCT : GGAGTGATGGATTCACAGAAGCCCCCTGATGCAATATCTGGCAATATGACTTCAGGTGAAATAGTAGTAGTCTTTACATTTTTAGTCCAAGCTACTCGAACAATAGTCAATGTATCCTTCTTTTGAATGCAAAAGAATCTCGCAGAAACAATGGTGGATCCAGTATAAGCTGTTAGTCTGGCCAAAAACTCTGCTTTGGACTCGAACCTCATGTATATACGTGGAAAAAAAGAAGGAAGAATGTCTCTTGTACAAACAATGGTGGATCCAATATAAGCTATGGTTTGGCCAAACCTATGGCTTTAGACTAGAGCCTTATGTAAATATGTGGAAAAAA</gDNA_template>
            <first_frame> I  N  F  P  F  V  H  V  T  K  P  L  S  *  *  A  L  A  A  A  T  I  N  G  T  I  P  F  L  E  K  Q  Q  S  I  H  I  Y  F  N  T  S  H  K  R  E  I  E  I  L  I  L  H  F  P  N  F  I  N  N  R  R  S  F  F  L  R  S  I  R   : E  A  I  E  L  Q  N  H  E  L  L  P  G  I  L  E  Q  S  C  W  P  *  N  N  S  L  L  G  S  Y  G  Q  L  G  L  C  H  F   : W  S  D  G  F  T  E  A  P  *  C  N  I  W  Q  Y  D  F  R  *  N  S  S  S  L  Y  I  F  S  P  S  Y  S  N  N  S  Q  C  I  L  L  L  N  A  K  E  S  R  R  N  N  G  G  S  S  I  S  C  *  S  G  Q  K  L  C  F  G  L  E  P  H  V  Y  T  W  K  K  R  R  K  N  V  S  C  T  N  N  G  G  S  N  I  S  Y  G  L  A  K  P  M  A  L  D  *  S  L  M  *  I  C  G  K   </first_frame>
            <second_frame>  *  I  F  H  S  F  T  *  L  N  H  F  H  N  E  P  *  L  L  L  L  L  M  A  Q  F  L  F  W  K  N  N  K  V  S  T  F  I  S  T  L  L  I  K  E  K  L  K  F  *  F  C  I  S  P  I  S  S  T  I  A  E  A  F  F  C  A  V  F  E  :  R  Q  L  N  Y  K  I  M  S  Y  F  R  A  F  L  N  S  P  V  G  P  K  T  T  H  F  W  G  P  M  A  N  W  G  F  V  I  S  :  G  V  M  D  S  Q  K  P  P  D  A  I  S  G  N  M  T  S  G  E  I  V  V  V  F  T  F  L  V  Q  A  T  R  T  I  V  N  V  S  F  F  *  M  Q  K  N  L  A  E  T  M  V  D  P  V  *  A  V  S  L  A  K  N  S  A  L  D  S  N  L  M  Y  I  R  G  K  K  E  G  R  M  S  L  V  Q  T  M  V  D  P  I  *  A  M  V  W  P  N  L  W  L  *  T  R  A  L  C  K  Y  V  E  K  </second_frame>
            <third_frame>   K  F  S  I  R  S  R  N  *  T  T  F  I  M  S  P  S  C  C  Y  Y  *  W  H  N  S  F  S  G  K  T  T  K  Y  P  H  L  F  Q  H  F  S  *  K  R  N  *  N  F  N  F  A  F  P  Q  F  H  Q  Q  S  Q  K  L  F  S  A  Q  Y  S  R :   G  N  *  I  T  K  S  *  V  T  S  G  H  S  *  T  V  L  L  A  L  K  Q  L  T  F  G  V  L  W  P  T  G  A  L  S  F  L :   E  *  W  I  H  R  S  P  L  M  Q  Y  L  A  I  *  L  Q  V  K  *  *  *  S  L  H  F  *  S  K  L  L  E  Q  *  S  M  Y  P  S  F  E  C  K  R  I  S  Q  K  Q  W  W  I  Q  Y  K  L  L  V  W  P  K  T  L  L  W  T  R  T  S  C  I  Y  V  E  K  K  K  E  E  C  L  L  Y  K  Q  W  W  I  Q  Y  K  L  W  F  G  Q  T  Y  G  F  R  L  E  P  Y  V  N  M  W  K  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0127C05.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="46343" stop="46402"/>
                    <exon start="47216" stop="47329"/>
                    <exon start="47431" stop="47556"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>297</number_coding_nucleotides>
                  <number_encoded_amino_acids>99</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FCISPISSTIAEAFFCAVFERQLNYKIMSYFRAFLNSPVGPKTTHFWGPMANWGFVISGVMDSQKPPDAISGNMTSGEIVVVFTFLVQATRTIVNVSFF*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0127C05.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="47537" stop="47767"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>231</number_coding_nucleotides>
                  <number_encoded_amino_acids>77</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SMYPSFECKRISQKQWWIQYKLLVWPKTLLWTRTSCIYVEKKKEECLLYKQWWIQYKLWFGQTYGFRLEPYVNMWKK</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0127C05.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="46237" stop="46402"/>
                    <exon start="47216" stop="47280"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>228</number_coding_nucleotides>
                  <number_encoded_amino_acids>76</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ALAAATINGTIPFLEKQQSIHIYFNTSHKREIEILILHFPNFINNRRSFFLRSIREAIELQNHELLPGILEQSCWP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="46305" e_stop="46402"/>
            <exon e_start="46796" e_stop="46895"/>
            <exon e_start="47216" e_stop="47329"/>
            <exon e_start="47431" e_stop="47485"/>
            <exon e_start="47982" e_stop="48044"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.792" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.966" acc_prob="0.996" e_score="0.982"/>
          <exon-intron don_prob="0.895" acc_prob="0.910" e_score="1.000"/>
          <exon-only e_score="0.984"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="46305" e_stop="46402" e_length="98"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.998">
            <gDNA_intron_boundary i_start="46403" i_stop="46795" i_length="393"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="46796" e_stop="46895" e_length="100"/>
          </exon>
          <intron i_serial="2" don_prob="0.792" acc_prob="0.998">
            <gDNA_intron_boundary i_start="46896" i_stop="47215" i_length="320"/>
          </intron>
          <exon e_serial="3" e_score="0.982">
            <gDNA_exon_boundary e_start="47216" e_stop="47329" e_length="114"/>
          </exon>
          <intron i_serial="3" don_prob="0.966" acc_prob="0.996">
            <gDNA_intron_boundary i_start="47330" i_stop="47430" i_length="101"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="47431" e_stop="47485" e_length="55"/>
          </exon>
          <intron i_serial="4" don_prob="0.895" acc_prob="0.910">
            <gDNA_intron_boundary i_start="47486" i_stop="47981" i_length="496"/>
          </intron>
          <exon e_serial="5" e_score="0.984">
            <gDNA_exon_boundary e_start="47982" e_stop="48044" e_length="63"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46305" stop="46402"/>
              <exon start="46796" stop="46895"/>
              <exon start="47216" stop="47329"/>
              <exon start="47431" stop="47485"/>
              <exon start="47982" stop="48044"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U339430" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTCAACACTTCTCATAAAAGAGAAATTGAAATTTTAATTTTGCATTTCCCCAATTTCATCAACAATCGCAGAAGCTTTTTTCTGCGCAGTATTCGAG : GAATTTGAACCTGAAACGTTAGGGTTCTCAACCCACTTTACTAACCACTAGGTCACGTCCTTTGATTGGGGTGTGAGCATTGGAGTTGATAGAGGAAGAT : AGGCAATTGAATTACAAAATCATGAGTTACTTCCGGGCATTCTTGAACAGTCCTGTTGGCCCTAAAACAACTCACTTTTGGGGTCCTATGGCCAACTGGGGCTTTGTCATTTCT : GGAGTGATGGATTCACAGAAGCCCCCTGATGCAATATCTGGCAATATGACTTCAG : TGCTATGTGTATATTCACTATTATGTATGAGATTTGCATGGATGGTACGTCCTCGCAATTATC</gDNA_template>
            <first_frame> F  Q  H  F  S  *  K  R  N  *  N  F  N  F  A  F  P  Q  F  H  Q  Q  S  Q  K  L  F  S  A  Q  Y  S  R :   N  L  N  L  K  R  *  G  S  Q  P  T  L  L  T  T  R  S  R  P  L  I  G  V  *  A  L  E  L  I  E  E  D  :  R  Q  L  N  Y  K  I  M  S  Y  F  R  A  F  L  N  S  P  V  G  P  K  T  T  H  F  W  G  P  M  A  N  W  G  F  V  I  S  :  G  V  M  D  S  Q  K  P  P  D  A  I  S  G  N  M  T  S   : V  L  C  V  Y  S  L  L  C  M  R  F  A  W  M  V  R  P  R  N  Y  </first_frame>
            <second_frame>  F  N  T  S  H  K  R  E  I  E  I  L  I  L  H  F  P  N  F  I  N  N  R  R  S  F  F  L  R  S  I  R   : G  I  *  T  *  N  V  R  V  L  N  P  L  Y  *  P  L  G  H  V  L  *  L  G  C  E  H  W  S  *  *  R  K  I :   G  N  *  I  T  K  S  *  V  T  S  G  H  S  *  T  V  L  L  A  L  K  Q  L  T  F  G  V  L  W  P  T  G  A  L  S  F  L :   E  *  W  I  H  R  S  P  L  M  Q  Y  L  A  I  *  L  Q  :  C  Y  V  Y  I  H  Y  Y  V  *  D  L  H  G  W  Y  V  L  A  I  I </second_frame>
            <third_frame>   S  T  L  L  I  K  E  K  L  K  F  *  F  C  I  S  P  I  S  S  T  I  A  E  A  F  F  C  A  V  F  E  :  E  F  E  P  E  T  L  G  F  S  T  H  F  T  N  H  *  V  T  S  F  D  W  G  V  S  I  G  V  D  R  G  R   : *  A  I  E  L  Q  N  H  E  L  L  P  G  I  L  E  Q  S  C  W  P  *  N  N  S  L  L  G  S  Y  G  Q  L  G  L  C  H  F   : W  S  D  G  F  T  E  A  P  *  C  N  I  W  Q  Y  D  F  S :   A  M  C  I  F  T  I  M  Y  E  I  C  M  D  G  T  S  S  Q  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0127C05.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="46872" stop="46895"/>
                    <exon start="47216" stop="47329"/>
                    <exon start="47431" stop="47485"/>
                    <exon start="47982" stop="48043"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>255</number_coding_nucleotides>
                  <number_encoded_amino_acids>85</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ALELIEEDRQLNYKIMSYFRAFLNSPVGPKTTHFWGPMANWGFVISGVMDSQKPPDAISGNMTSVLCVYSLLCMRFAWMVRPRNY</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="52012" PGL_stop="54062"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="52012" e_stop="52062"/>
            <exon e_start="52133" e_stop="52169"/>
            <exon e_start="52271" e_stop="52311"/>
            <exon e_start="53013" e_stop="53243"/>
            <exon e_start="53340" e_stop="53442"/>
            <exon e_start="53530" e_stop="53597"/>
            <exon e_start="53787" e_stop="54062"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.182" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.940" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.947" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.948" acc_prob="0.965" e_score="1.000"/>
          <exon-intron don_prob="0.965" acc_prob="0.969" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="52012" e_stop="52062" e_length="51"/>
          </exon>
          <intron i_serial="1" don_prob="0.182" acc_prob="0.998">
            <gDNA_intron_boundary i_start="52063" i_stop="52132" i_length="70"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="52133" e_stop="52169" e_length="37"/>
          </exon>
          <intron i_serial="2" don_prob="0.940" acc_prob="0.982">
            <gDNA_intron_boundary i_start="52170" i_stop="52270" i_length="101"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="52271" e_stop="52311" e_length="41"/>
          </exon>
          <intron i_serial="3" don_prob="0.947" acc_prob="0.996">
            <gDNA_intron_boundary i_start="52312" i_stop="53012" i_length="701"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="53013" e_stop="53243" e_length="231"/>
          </exon>
          <intron i_serial="4" don_prob="0.948" acc_prob="0.965">
            <gDNA_intron_boundary i_start="53244" i_stop="53339" i_length="96"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="53340" e_stop="53442" e_length="103"/>
          </exon>
          <intron i_serial="5" don_prob="0.965" acc_prob="0.969">
            <gDNA_intron_boundary i_start="53443" i_stop="53529" i_length="87"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="53530" e_stop="53597" e_length="68"/>
          </exon>
          <intron i_serial="6" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="53598" i_stop="53786" i_length="189"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="53787" e_stop="54062" e_length="276"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52012" stop="52062"/>
              <exon start="52133" stop="52169"/>
              <exon start="52271" stop="52311"/>
              <exon start="53013" stop="53243"/>
              <exon start="53340" stop="53442"/>
              <exon start="53530" stop="53597"/>
              <exon start="53787" stop="54062"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U314102" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACACCTTCTATCAGCAGCTGCAGGGGAACAGCAGCATCACCGGCAGCCATG : GTGAAGTATTCGAATGAACCAGAGAACCCAACCAAAT : CTTGCAAAGCTAGGGGTTCGTATCTCAGAGCTCATTTTAAG : AATACTAGAGAAACAGCGCATGCCCTTAGGAAGATGCCTTTGAACAAGGCAAAGAGCTATTTGGAGGATGTTCTTGCCCACAAACAAGCCATCCCCTTCACCCGCTTTTGTCGTGGGGTTGGTCGCACTGCTCAGGCGAAGAATCGCCACTCAAATGGACAAGGACGTTGGCCTGTCAAATCTGCAAAGTTTATCCTCGATTTGCTAAAAAATGCTGAGAGTAATGCTGAA : GTTAAAGGCTTGGATGTGGATTCACTTTACATTACTCACATCCAAGTAAACCAAGCACAGAAACAGAGGCGCCGTACATACCGTGCTCATGGAAGAATCAATC : CTTATATGTCACATCCTTGCCATATCGAGCTGGTATTGTCTGAGAAGGAAGAATCTGTTAAGAAAGAG : CCTGAAACTCAGTTAGCCCCCAGGAAGACAAAGGCATCTTCCTGAGCAGAGAAAGGAATCCCGAAATTTTGGAAGTATAATTTCAATATTCCTTTAGCCTTTGTATCGGAAGAATTTAGTGCTATTTCAAACATTTCTTCATAGAATTTAGTGTTTTTTGTGTAATTTTACTATTTCGGAGCTTAAATTGGCTTGTGCTTTTTGAGCATGTGTATGAGGGAATTTTGGATTTCTATGGTCTTGCTTTTTCTAAGAATGAATTGGGATGTTAGTAGT</gDNA_template>
            <first_frame> T  P  S  I  S  S  C  R  G  T  A  A  S  P  A  A  M  :  V  K  Y  S  N  E  P  E  N  P  T  K   : S  C  K  A  R  G  S  Y  L  R  A  H  F  K  :  N  T  R  E  T  A  H  A  L  R  K  M  P  L  N  K  A  K  S  Y  L  E  D  V  L  A  H  K  Q  A  I  P  F  T  R  F  C  R  G  V  G  R  T  A  Q  A  K  N  R  H  S  N  G  Q  G  R  W  P  V  K  S  A  K  F  I  L  D  L  L  K  N  A  E  S  N  A  E  :  V  K  G  L  D  V  D  S  L  Y  I  T  H  I  Q  V  N  Q  A  Q  K  Q  R  R  R  T  Y  R  A  H  G  R  I  N   : P  Y  M  S  H  P  C  H  I  E  L  V  L  S  E  K  E  E  S  V  K  K  E  :  P  E  T  Q  L  A  P  R  K  T  K  A  S  S  *  A  E  K  G  I  P  K  F  W  K  Y  N  F  N  I  P  L  A  F  V  S  E  E  F  S  A  I  S  N  I  S  S  *  N  L  V  F  F  V  *  F  Y  Y  F  G  A  *  I  G  L  C  F  L  S  M  C  M  R  E  F  W  I  S  M  V  L  L  F  L  R  M  N  W  D  V  S  S </first_frame>
            <second_frame>  H  L  L  S  A  A  A  G  E  Q  Q  H  H  R  Q  P  W :   *  S  I  R  M  N  Q  R  T  Q  P  N  :  L  A  K  L  G  V  R  I  S  E  L  I  L  R :   I  L  E  K  Q  R  M  P  L  G  R  C  L  *  T  R  Q  R  A  I  W  R  M  F  L  P  T  N  K  P  S  P  S  P  A  F  V  V  G  L  V  A  L  L  R  R  R  I  A  T  Q  M  D  K  D  V  G  L  S  N  L  Q  S  L  S  S  I  C  *  K  M  L  R  V  M  L  K :   L  K  A  W  M  W  I  H  F  T  L  L  T  S  K  *  T  K  H  R  N  R  G  A  V  H  T  V  L  M  E  E  S  I  :  L  I  C  H  I  L  A  I  S  S  W  Y  C  L  R  R  K  N  L  L  R  K  S :   L  K  L  S  *  P  P  G  R  Q  R  H  L  P  E  Q  R  K  E  S  R  N  F  G  S  I  I  S  I  F  L  *  P  L  Y  R  K  N  L  V  L  F  Q  T  F  L  H  R  I  *  C  F  L  C  N  F  T  I  S  E  L  K  L  A  C  A  F  *  A  C  V  *  G  N  F  G  F  L  W  S  C  F  F  *  E  *  I  G  M  L  V   </second_frame>
            <third_frame>   T  F  Y  Q  Q  L  Q  G  N  S  S  I  T  G  S  H   : G  E  V  F  E  *  T  R  E  P  N  Q  I :   L  Q  S  *  G  F  V  S  Q  S  S  F  *   : E  Y  *  R  N  S  A  C  P  *  E  D  A  F  E  Q  G  K  E  L  F  G  G  C  S  C  P  Q  T  S  H  P  L  H  P  L  L  S  W  G  W  S  H  C  S  G  E  E  S  P  L  K  W  T  R  T  L  A  C  Q  I  C  K  V  Y  P  R  F  A  K  K  C  *  E  *  C  *   : S  *  R  L  G  C  G  F  T  L  H  Y  S  H  P  S  K  P  S  T  E  T  E  A  P  Y  I  P  C  S  W  K  N  Q  S :   L  Y  V  T  S  L  P  Y  R  A  G  I  V  *  E  G  R  I  C  *  E  R   : A  *  N  S  V  S  P  Q  E  D  K  G  I  F  L  S  R  E  R  N  P  E  I  L  E  V  *  F  Q  Y  S  F  S  L  C  I  G  R  I  *  C  Y  F  K  H  F  F  I  E  F  S  V  F  C  V  I  L  L  F  R  S  L  N  W  L  V  L  F  E  H  V  Y  E  G  I  L  D  F  Y  G  L  A  F  S  K  N  E  L  G  C  *  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0127C05.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="52012" stop="52062"/>
                    <exon start="52133" stop="52169"/>
                    <exon start="52271" stop="52311"/>
                    <exon start="53013" stop="53243"/>
                    <exon start="53340" stop="53442"/>
                    <exon start="53530" stop="53597"/>
                    <exon start="53787" stop="53831"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>573</number_coding_nucleotides>
                  <number_encoded_amino_acids>191</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TPSISSCRGTAASPAAMVKYSNEPENPTKSCKARGSYLRAHFKNTRETAHALRKMPLNKAKSYLEDVLAHKQAIPFTRFCRGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDSLYITHIQVNQAQKQRRRTYRAHGRINPYMSHPCHIELVLSEKEESVKKEPETQLAPRKTKASS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="52291" e_stop="52311"/>
            <exon e_start="53013" e_stop="53442"/>
            <exon e_start="53530" e_stop="53597"/>
            <exon e_start="53787" e_stop="53807"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.947" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.965" acc_prob="0.969" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="52291" e_stop="52311" e_length="21"/>
          </exon>
          <intron i_serial="1" don_prob="0.947" acc_prob="0.996">
            <gDNA_intron_boundary i_start="52312" i_stop="53012" i_length="701"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="53013" e_stop="53442" e_length="430"/>
          </exon>
          <intron i_serial="2" don_prob="0.965" acc_prob="0.969">
            <gDNA_intron_boundary i_start="53443" i_stop="53529" i_length="87"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="53530" e_stop="53597" e_length="68"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="53598" i_stop="53786" i_length="189"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="53787" e_stop="53807" e_length="21"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52291" stop="52311"/>
              <exon start="53013" stop="53442"/>
              <exon start="53530" stop="53597"/>
              <exon start="53787" stop="53807"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U334783" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TATCTCAGAGCTCATTTTAAG : AATACTAGAGAAACAGCGCATGCCCTTAGGAAGATGCCTTTGAACAAGGCAAAGAGCTATTTGGAGGATGTTCTTGCCCACAAACAAGCCATCCCCTTCACCCGCTTTTGTCGTGGGGTTGGTCGCACTGCTCAGGCGAAGAATCGCCACTCAAATGGACAAGGACGTTGGCCTGTCAAATCTGCAAAGTTTATCCTCGATTTGCTAAAAAATGCTGAGAGTAATGCTGAAGTATGTTCAAATTTGTTGGATTATATTATTTCCCTTGGTCCTTTGCTTTCGCTTTTCTCTAAAGATGAGTTTGTTGTTGTTTTCACCTCATTTTAGGTTAAAGGCTTGGATGTGGATTCACTTTACATTACTCACATCCAAGTAAACCAAGCACAGAAACAGAGGCGCCGTACATACCGTGCTCATGGAAGAATCAATC : CTTATATGTCACATCCTTGCCATATCGAGCTGGTATTGTCTGAGAAGGAAGAATCTGTTAAGAAAGAG : CCTGAAACTCAGTTAGCCCCC</gDNA_template>
            <first_frame> Y  L  R  A  H  F  K  :  N  T  R  E  T  A  H  A  L  R  K  M  P  L  N  K  A  K  S  Y  L  E  D  V  L  A  H  K  Q  A  I  P  F  T  R  F  C  R  G  V  G  R  T  A  Q  A  K  N  R  H  S  N  G  Q  G  R  W  P  V  K  S  A  K  F  I  L  D  L  L  K  N  A  E  S  N  A  E  V  C  S  N  L  L  D  Y  I  I  S  L  G  P  L  L  S  L  F  S  K  D  E  F  V  V  V  F  T  S  F  *  V  K  G  L  D  V  D  S  L  Y  I  T  H  I  Q  V  N  Q  A  Q  K  Q  R  R  R  T  Y  R  A  H  G  R  I  N   : P  Y  M  S  H  P  C  H  I  E  L  V  L  S  E  K  E  E  S  V  K  K  E  :  P  E  T  Q  L  A  P </first_frame>
            <second_frame>  I  S  E  L  I  L  R :   I  L  E  K  Q  R  M  P  L  G  R  C  L  *  T  R  Q  R  A  I  W  R  M  F  L  P  T  N  K  P  S  P  S  P  A  F  V  V  G  L  V  A  L  L  R  R  R  I  A  T  Q  M  D  K  D  V  G  L  S  N  L  Q  S  L  S  S  I  C  *  K  M  L  R  V  M  L  K  Y  V  Q  I  C  W  I  I  L  F  P  L  V  L  C  F  R  F  S  L  K  M  S  L  L  L  F  S  P  H  F  R  L  K  A  W  M  W  I  H  F  T  L  L  T  S  K  *  T  K  H  R  N  R  G  A  V  H  T  V  L  M  E  E  S  I  :  L  I  C  H  I  L  A  I  S  S  W  Y  C  L  R  R  K  N  L  L  R  K  S :   L  K  L  S  *  P   </second_frame>
            <third_frame>   S  Q  S  S  F  *   : E  Y  *  R  N  S  A  C  P  *  E  D  A  F  E  Q  G  K  E  L  F  G  G  C  S  C  P  Q  T  S  H  P  L  H  P  L  L  S  W  G  W  S  H  C  S  G  E  E  S  P  L  K  W  T  R  T  L  A  C  Q  I  C  K  V  Y  P  R  F  A  K  K  C  *  E  *  C  *  S  M  F  K  F  V  G  L  Y  Y  F  P  W  S  F  A  F  A  F  L  *  R  *  V  C  C  C  F  H  L  I  L  G  *  R  L  G  C  G  F  T  L  H  Y  S  H  P  S  K  P  S  T  E  T  E  A  P  Y  I  P  C  S  W  K  N  Q  S :   L  Y  V  T  S  L  P  Y  R  A  G  I  V  *  E  G  R  I  C  *  E  R   : A  *  N  S  V  S  P  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0127C05.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="52291" stop="52311"/>
                    <exon start="53013" stop="53339"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>345</number_coding_nucleotides>
                  <number_encoded_amino_acids>115</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YLRAHFKNTRETAHALRKMPLNKAKSYLEDVLAHKQAIPFTRFCRGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVCSNLLDYIISLGPLLSLFSKDEFVVVFTSF*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0127C05.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="53340" stop="53442"/>
                    <exon start="53530" stop="53597"/>
                    <exon start="53787" stop="53807"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VKGLDVDSLYITHIQVNQAQKQRRRTYRAHGRINPYMSHPCHIELVLSEKEESVKKEPETQLAP</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="56256" PGL_stop="58698"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="56256" e_stop="56313"/>
            <exon e_start="56383" e_stop="56419"/>
            <exon e_start="56520" e_stop="56560"/>
            <exon e_start="57601" e_stop="57831"/>
            <exon e_start="57927" e_stop="58029"/>
            <exon e_start="58117" e_stop="58184"/>
            <exon e_start="58416" e_stop="58698"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.967" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.956" acc_prob="0.946" e_score="1.000"/>
          <exon-intron don_prob="0.975" acc_prob="0.960" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.975" e_score="1.000"/>
          <exon-only e_score="0.947"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="56256" e_stop="56313" e_length="58"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="56314" i_stop="56382" i_length="69"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="56383" e_stop="56419" e_length="37"/>
          </exon>
          <intron i_serial="2" don_prob="0.967" acc_prob="0.999">
            <gDNA_intron_boundary i_start="56420" i_stop="56519" i_length="100"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="56520" e_stop="56560" e_length="41"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="0.996">
            <gDNA_intron_boundary i_start="56561" i_stop="57600" i_length="1040"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="57601" e_stop="57831" e_length="231"/>
          </exon>
          <intron i_serial="4" don_prob="0.956" acc_prob="0.946">
            <gDNA_intron_boundary i_start="57832" i_stop="57926" i_length="95"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="57927" e_stop="58029" e_length="103"/>
          </exon>
          <intron i_serial="5" don_prob="0.975" acc_prob="0.960">
            <gDNA_intron_boundary i_start="58030" i_stop="58116" i_length="87"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="58117" e_stop="58184" e_length="68"/>
          </exon>
          <intron i_serial="6" don_prob="1.000" acc_prob="0.975">
            <gDNA_intron_boundary i_start="58185" i_stop="58415" i_length="231"/>
          </intron>
          <exon e_serial="7" e_score="0.947">
            <gDNA_exon_boundary e_start="58416" e_stop="58698" e_length="283"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56256" stop="56313"/>
              <exon start="56383" stop="56419"/>
              <exon start="56520" stop="56560"/>
              <exon start="57601" stop="57831"/>
              <exon start="57927" stop="58029"/>
              <exon start="58117" stop="58184"/>
              <exon start="58416" stop="58698"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U314103" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAAGCAGACATCTTCTATCAGCAGCTGCAGGGGAACAGCAGCATCACCGGCGGCCATG : GTGAAGTATTCGAATGAACCGGAGAACCCAACCAAAT : CTTGCAAAGCTAGGGGTTCGGATCTCAGAGCTCATTTCAAG : AATACTAGAGAAACAGCGCATGCCCTTAGGAAGATGCCTTTGAACAAGGCAAAGAGCTACTTGGAGGATGTTCTTGCCCATAAACAAGCCATCCCCTTCACCCGCTTTTGTCGCGGGGTTGGTCGTACTGCTCAGGCAAAGAATCGCCACTCAAATGGACAAGGACGTTGGCCTGTCAAATCTGCAAAGTTTATTCTGGATTTGCTCAAAAATGCTGAGAGTAATGCTGAA : GTTAAAGGCTTGGATGTGGATTCACTTTACATCACTCACATCCAAGTAAACCAAGCACAGAAACAGAGGCGCCGTACATACCGTGCTCATGGAAGAATCAATC : CTTATATGTCTCATCCGTGCCATATCGAGTTGGTATTGTCTGAAAAGGAAGAATCTGTTAAGAAAGAG : CCTGAGACTCAATTGGCTCCCAGGAAGACGAAGGCATCTTCTTGATGGAAGGAATGAATTCCTAAATTTTGAAAGTATAATTTCAATACCTATAGCCTTGGTATCAGAAGAATTTAGTGCTATTTCAAACATTTCTTTATAGGAATTTGTGTTATTGTGTAATTTTTACTACTTCAGAGCTTAAATTGGGTTGTGCTTTTTGAAGCATGTTTATGAGGAAATTTTTGGATTTCTATATTCTGGCTTTTTCGAAGAGTATGTTTATAGTATTCTGATTCTGAAA</gDNA_template>
            <first_frame> E  A  D  I  F  Y  Q  Q  L  Q  G  N  S  S  I  T  G  G  H   : G  E  V  F  E  *  T  G  E  P  N  Q  I :   L  Q  S  *  G  F  G  S  Q  S  S  F  Q   : E  Y  *  R  N  S  A  C  P  *  E  D  A  F  E  Q  G  K  E  L  L  G  G  C  S  C  P  *  T  S  H  P  L  H  P  L  L  S  R  G  W  S  Y  C  S  G  K  E  S  P  L  K  W  T  R  T  L  A  C  Q  I  C  K  V  Y  S  G  F  A  Q  K  C  *  E  *  C  *   : S  *  R  L  G  C  G  F  T  L  H  H  S  H  P  S  K  P  S  T  E  T  E  A  P  Y  I  P  C  S  W  K  N  Q  S :   L  Y  V  S  S  V  P  Y  R  V  G  I  V  *  K  G  R  I  C  *  E  R   : A  *  D  S  I  G  S  Q  E  D  E  G  I  F  L  M  E  G  M  N  S  *  I  L  K  V  *  F  Q  Y  L  *  P  W  Y  Q  K  N  L  V  L  F  Q  T  F  L  Y  R  N  L  C  Y  C  V  I  F  T  T  S  E  L  K  L  G  C  A  F  *  S  M  F  M  R  K  F  L  D  F  Y  I  L  A  F  S  K  S  M  F  I  V  F  *  F  *   </first_frame>
            <second_frame>  K  Q  T  S  S  I  S  S  C  R  G  T  A  A  S  P  A  A  M  :  V  K  Y  S  N  E  P  E  N  P  T  K   : S  C  K  A  R  G  S  D  L  R  A  H  F  K  :  N  T  R  E  T  A  H  A  L  R  K  M  P  L  N  K  A  K  S  Y  L  E  D  V  L  A  H  K  Q  A  I  P  F  T  R  F  C  R  G  V  G  R  T  A  Q  A  K  N  R  H  S  N  G  Q  G  R  W  P  V  K  S  A  K  F  I  L  D  L  L  K  N  A  E  S  N  A  E  :  V  K  G  L  D  V  D  S  L  Y  I  T  H  I  Q  V  N  Q  A  Q  K  Q  R  R  R  T  Y  R  A  H  G  R  I  N   : P  Y  M  S  H  P  C  H  I  E  L  V  L  S  E  K  E  E  S  V  K  K  E  :  P  E  T  Q  L  A  P  R  K  T  K  A  S  S  *  W  K  E  *  I  P  K  F  *  K  Y  N  F  N  T  Y  S  L  G  I  R  R  I  *  C  Y  F  K  H  F  F  I  G  I  C  V  I  V  *  F  L  L  L  Q  S  L  N  W  V  V  L  F  E  A  C  L  *  G  N  F  W  I  S  I  F  W  L  F  R  R  V  C  L  *  Y  S  D  S  E  </second_frame>
            <third_frame>   S  R  H  L  L  S  A  A  A  G  E  Q  Q  H  H  R  R  P  W :   *  S  I  R  M  N  R  R  T  Q  P  N  :  L  A  K  L  G  V  R  I  S  E  L  I  S  R :   I  L  E  K  Q  R  M  P  L  G  R  C  L  *  T  R  Q  R  A  T  W  R  M  F  L  P  I  N  K  P  S  P  S  P  A  F  V  A  G  L  V  V  L  L  R  Q  R  I  A  T  Q  M  D  K  D  V  G  L  S  N  L  Q  S  L  F  W  I  C  S  K  M  L  R  V  M  L  K :   L  K  A  W  M  W  I  H  F  T  S  L  T  S  K  *  T  K  H  R  N  R  G  A  V  H  T  V  L  M  E  E  S  I  :  L  I  C  L  I  R  A  I  S  S  W  Y  C  L  K  R  K  N  L  L  R  K  S :   L  R  L  N  W  L  P  G  R  R  R  H  L  L  D  G  R  N  E  F  L  N  F  E  S  I  I  S  I  P  I  A  L  V  S  E  E  F  S  A  I  S  N  I  S  L  *  E  F  V  L  L  C  N  F  Y  Y  F  R  A  *  I  G  L  C  F  L  K  H  V  Y  E  E  I  F  G  F  L  Y  S  G  F  F  E  E  Y  V  Y  S  I  L  I  L  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0127C05.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="56257" stop="56313"/>
                    <exon start="56383" stop="56419"/>
                    <exon start="56520" stop="56560"/>
                    <exon start="57601" stop="57831"/>
                    <exon start="57927" stop="58029"/>
                    <exon start="58117" stop="58184"/>
                    <exon start="58416" stop="58460"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>579</number_coding_nucleotides>
                  <number_encoded_amino_acids>193</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KQTSSISSCRGTAASPAAMVKYSNEPENPTKSCKARGSDLRAHFKNTRETAHALRKMPLNKAKSYLEDVLAHKQAIPFTRFCRGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDSLYITHIQVNQAQKQRRRTYRAHGRINPYMSHPCHIELVLSEKEESVKKEPETQLAPRKTKASS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="57926" e_stop="57933"/>
            <exon e_start="58000" e_stop="58029"/>
            <exon e_start="58117" e_stop="58184"/>
            <exon e_start="58416" e_stop="58649"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.000" e_score="0.750"/>
          <exon-intron don_prob="0.975" acc_prob="0.960" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.975" e_score="0.824"/>
          <exon-only e_score="0.983"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.750">
            <gDNA_exon_boundary e_start="57926" e_stop="57933" e_length="8"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.000">
            <gDNA_intron_boundary i_start="57934" i_stop="57999" i_length="66"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="58000" e_stop="58029" e_length="30"/>
          </exon>
          <intron i_serial="2" don_prob="0.975" acc_prob="0.960">
            <gDNA_intron_boundary i_start="58030" i_stop="58116" i_length="87"/>
          </intron>
          <exon e_serial="3" e_score="0.824">
            <gDNA_exon_boundary e_start="58117" e_stop="58184" e_length="68"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.975">
            <gDNA_intron_boundary i_start="58185" i_stop="58415" i_length="231"/>
          </intron>
          <exon e_serial="4" e_score="0.983">
            <gDNA_exon_boundary e_start="58416" e_stop="58649" e_length="234"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57926" stop="57933"/>
              <exon start="58000" stop="58029"/>
              <exon start="58117" stop="58184"/>
              <exon start="58416" stop="58649"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U334784" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGTTAAAG : GTACATACCGTGCTCATGGAAGAATCAATC : CTTATATGTCTCATCCGTGCCATATCGAGTTGGTATTGTCTGAAAAGGAAGAATCTGTTAAGAAAGAG : CCTGAGACTCAATTGGCTCCCAGGAAGACGAAGGCATCTTCTTGATGGAAGGAATGAATTCCTAAATTTTGAAAGTATAATTTCAATACCTATAGCCTTGGTATCAGAAGAATTTAGTGCTATTTCAAACATTTCTTTATAGGAATTTGTGTTATTGTGTAATTTTTACTACTTCAGAGCTTAAATTGGGTTGTGCTTTTTGAAGCATGTTTATGAGGAAATTTTTGGATTTCT</gDNA_template>
            <first_frame> G  *  R :   Y  I  P  C  S  W  K  N  Q  S :   L  Y  V  S  S  V  P  Y  R  V  G  I  V  *  K  G  R  I  C  *  E  R   : A  *  D  S  I  G  S  Q  E  D  E  G  I  F  L  M  E  G  M  N  S  *  I  L  K  V  *  F  Q  Y  L  *  P  W  Y  Q  K  N  L  V  L  F  Q  T  F  L  Y  R  N  L  C  Y  C  V  I  F  T  T  S  E  L  K  L  G  C  A  F  *  S  M  F  M  R  K  F  L  D  F  </first_frame>
            <second_frame>  V  K   : G  T  Y  R  A  H  G  R  I  N   : P  Y  M  S  H  P  C  H  I  E  L  V  L  S  E  K  E  E  S  V  K  K  E  :  P  E  T  Q  L  A  P  R  K  T  K  A  S  S  *  W  K  E  *  I  P  K  F  *  K  Y  N  F  N  T  Y  S  L  G  I  R  R  I  *  C  Y  F  K  H  F  F  I  G  I  C  V  I  V  *  F  L  L  L  Q  S  L  N  W  V  V  L  F  E  A  C  L  *  G  N  F  W  I  S </second_frame>
            <third_frame>   L  K  :  V  H  T  V  L  M  E  E  S  I  :  L  I  C  L  I  R  A  I  S  S  W  Y  C  L  K  R  K  N  L  L  R  K  S :   L  R  L  N  W  L  P  G  R  R  R  H  L  L  D  G  R  N  E  F  L  N  F  E  S  I  I  S  I  P  I  A  L  V  S  E  E  F  S  A  I  S  N  I  S  L  *  E  F  V  L  L  C  N  F  Y  Y  F  R  A  *  I  G  L  C  F  L  K  H  V  Y  E  E  I  F  G  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0127C05.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="57928" stop="57933"/>
                    <exon start="58000" stop="58029"/>
                    <exon start="58117" stop="58184"/>
                    <exon start="58416" stop="58557"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>243</number_coding_nucleotides>
                  <number_encoded_amino_acids>81</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LKVHTVLMEESILICLIRAISSWYCLKRKNLLRKSLRLNWLPGRRRHLLDGRNEFLNFESIISIPIALVSEEFSAISNISL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="61399" PGL_stop="59724"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="61399" e_stop="61181"/>
            <exon e_start="60688" e_stop="60413"/>
            <exon e_start="60069" e_stop="59724"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.992" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="61399" e_stop="61181" e_length="219"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="61180" i_stop="60689" i_length="492"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="60688" e_stop="60413" e_length="276"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.992">
            <gDNA_intron_boundary i_start="60412" i_stop="60070" i_length="343"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="60069" e_stop="59724" e_length="346"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61399" stop="61181"/>
              <exon start="60688" stop="60413"/>
              <exon start="60069" stop="59724"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U341900" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGCAGGTTTCATCATCCTGATCCTAGTACAGTGACTGGAAACAATCCTTCCCTTGGATACAACAATGGTGGATCTGCTCCAGTACAAAGTGCCTCCTATTCACCAGTGTCTTCTTGGTCTTCACCACGAGCATCGAATGAGACATCTCCTTTTGTACCAGTGGTATATTCAGCAAACCAAGGCATTCTTCCTCTGAGTCCAGAATGGAACAGGTTTCAG : GCTCCGGTCTATCCAACCTCAGAGAAGAGCCTACCTACTCCTCCAGCTTTTACTGTGAAGGATCCAGCAACTAAGACAAACATCTATTCCCGACCTCAACCACCGTGGCTTGTTGAAGAATACCCTGAACGTCCAGGTCAGCCTGATTGCAGTTACTTCATTAAAACAGGAGATTGTAAATATAAGTCTTACTGCAAATTTCATCATCCGAAGACTCAAAAATCATTGACAAACCCTCCGAGTGTTCTCAATGACAAAGGCCTGCCACTAAGACCA : GGCCAAGCTGTCTGTTCATTCTATAGCCGTTACGGGATTTGCAAGTATGGACCTGCCTGTAAGTTTGATCATCCCGAACATATTGACAACGCACCAGCGTCTTCTCCTCGGCCTGCTTTTTATCAGCCTCCATTTGGCATTTCTTCTGCATCAGATGGCTTGAGGATGGCGAGGAAAGGAAATGGAAGTGGCTCTCTAGTACATCAGTCTGTCTAAGAAATCTTTGCATCCATTTCACCCAGAATTTAGAATAGAAATCACATGGTTTACAGACAGACTGGAAACTCTTTATAGTCTTTTTAGCGTTTTGTGTTGTGAAAAGCTCAAGCAAATAGGATTTTGTATA</gDNA_template>
            <first_frame> C  R  F  H  H  P  D  P  S  T  V  T  G  N  N  P  S  L  G  Y  N  N  G  G  S  A  P  V  Q  S  A  S  Y  S  P  V  S  S  W  S  S  P  R  A  S  N  E  T  S  P  F  V  P  V  V  Y  S  A  N  Q  G  I  L  P  L  S  P  E  W  N  R  F  Q  :  A  P  V  Y  P  T  S  E  K  S  L  P  T  P  P  A  F  T  V  K  D  P  A  T  K  T  N  I  Y  S  R  P  Q  P  P  W  L  V  E  E  Y  P  E  R  P  G  Q  P  D  C  S  Y  F  I  K  T  G  D  C  K  Y  K  S  Y  C  K  F  H  H  P  K  T  Q  K  S  L  T  N  P  P  S  V  L  N  D  K  G  L  P  L  R  P  :  G  Q  A  V  C  S  F  Y  S  R  Y  G  I  C  K  Y  G  P  A  C  K  F  D  H  P  E  H  I  D  N  A  P  A  S  S  P  R  P  A  F  Y  Q  P  P  F  G  I  S  S  A  S  D  G  L  R  M  A  R  K  G  N  G  S  G  S  L  V  H  Q  S  V  *  E  I  F  A  S  I  S  P  R  I  *  N  R  N  H  M  V  Y  R  Q  T  G  N  S  L  *  S  F  *  R  F  V  L  *  K  A  Q  A  N  R  I  L  Y  </first_frame>
            <second_frame>  A  G  F  I  I  L  I  L  V  Q  *  L  E  T  I  L  P  L  D  T  T  M  V  D  L  L  Q  Y  K  V  P  P  I  H  Q  C  L  L  G  L  H  H  E  H  R  M  R  H  L  L  L  Y  Q  W  Y  I  Q  Q  T  K  A  F  F  L  *  V  Q  N  G  T  G  F  R :   L  R  S  I  Q  P  Q  R  R  A  Y  L  L  L  Q  L  L  L  *  R  I  Q  Q  L  R  Q  T  S  I  P  D  L  N  H  R  G  L  L  K  N  T  L  N  V  Q  V  S  L  I  A  V  T  S  L  K  Q  E  I  V  N  I  S  L  T  A  N  F  I  I  R  R  L  K  N  H  *  Q  T  L  R  V  F  S  M  T  K  A  C  H  *  D  Q :   A  K  L  S  V  H  S  I  A  V  T  G  F  A  S  M  D  L  P  V  S  L  I  I  P  N  I  L  T  T  H  Q  R  L  L  L  G  L  L  F  I  S  L  H  L  A  F  L  L  H  Q  M  A  *  G  W  R  G  K  E  M  E  V  A  L  *  Y  I  S  L  S  K  K  S  L  H  P  F  H  P  E  F  R  I  E  I  T  W  F  T  D  R  L  E  T  L  Y  S  L  F  S  V  L  C  C  E  K  L  K  Q  I  G  F  C  I </second_frame>
            <third_frame>   Q  V  S  S  S  *  S  *  Y  S  D  W  K  Q  S  F  P  W  I  Q  Q  W  W  I  C  S  S  T  K  C  L  L  F  T  S  V  F  L  V  F  T  T  S  I  E  *  D  I  S  F  C  T  S  G  I  F  S  K  P  R  H  S  S  S  E  S  R  M  E  Q  V  S   : G  S  G  L  S  N  L  R  E  E  P  T  Y  S  S  S  F  Y  C  E  G  S  S  N  *  D  K  H  L  F  P  T  S  T  T  V  A  C  *  R  I  P  *  T  S  R  S  A  *  L  Q  L  L  H  *  N  R  R  L  *  I  *  V  L  L  Q  I  S  S  S  E  D  S  K  I  I  D  K  P  S  E  C  S  Q  *  Q  R  P  A  T  K  T   : R  P  S  C  L  F  I  L  *  P  L  R  D  L  Q  V  W  T  C  L  *  V  *  S  S  R  T  Y  *  Q  R  T  S  V  F  S  S  A  C  F  L  S  A  S  I  W  H  F  F  C  I  R  W  L  E  D  G  E  E  R  K  W  K  W  L  S  S  T  S  V  C  L  R  N  L  C  I  H  F  T  Q  N  L  E  *  K  S  H  G  L  Q  T  D  W  K  L  F  I  V  F  L  A  F  C  V  V  K  S  S  S  K  *  D  F  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0127C05.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="61399" stop="61181"/>
                    <exon start="60688" stop="60413"/>
                    <exon start="60069" stop="59854"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>708</number_coding_nucleotides>
                  <number_encoded_amino_acids>236</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CRFHHPDPSTVTGNNPSLGYNNGGSAPVQSASYSPVSSWSSPRASNETSPFVPVVYSANQGILPLSPEWNRFQAPVYPTSEKSLPTPPAFTVKDPATKTNIYSRPQPPWLVEEYPERPGQPDCSYFIKTGDCKYKSYCKFHHPKTQKSLTNPPSVLNDKGLPLRPGQAVCSFYSRYGICKYGPACKFDHPEHIDNAPASSPRPAFYQPPFGISSASDGLRMARKGNGSGSLVHQSV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="68827" PGL_stop="67039"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="68827" e_stop="68674"/>
            <exon e_start="68531" e_stop="68247"/>
            <exon e_start="67839" e_stop="67692"/>
            <exon e_start="67572" e_stop="67039"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.923" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.928" acc_prob="0.980" e_score="1.000"/>
          <exon-only e_score="0.985"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="68827" e_stop="68674" e_length="154"/>
          </exon>
          <intron i_serial="1" don_prob="0.923" acc_prob="0.981">
            <gDNA_intron_boundary i_start="68673" i_stop="68532" i_length="142"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="68531" e_stop="68247" e_length="285"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.994">
            <gDNA_intron_boundary i_start="68246" i_stop="67840" i_length="407"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="67839" e_stop="67692" e_length="148"/>
          </exon>
          <intron i_serial="3" don_prob="0.928" acc_prob="0.980">
            <gDNA_intron_boundary i_start="67691" i_stop="67573" i_length="119"/>
          </intron>
          <exon e_serial="4" e_score="0.985">
            <gDNA_exon_boundary e_start="67572" e_stop="67039" e_length="534"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68827" stop="68674"/>
              <exon start="68531" stop="68247"/>
              <exon start="67839" stop="67692"/>
              <exon start="67572" stop="67039"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U326954" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCTGCAGATCAAGTCACTGCAGCCAATGTTGCCAAAGAGTGTTTACTAGCAGCTTTAAAAGCAGACTCGAAAGCGGCTCACATTTGGACAAATCTAGCTAATGCTTATTACTTGATGGGTGATCATAGGAGCTCTGCAAAATGCTTGGAAAAG : GCAGGAAAAATTGATCCTAATTGTTTAGCGACAAGATATGCGGTTGGAGTTCACCGCATCAGGGATGCAGAGAGGTCCCAGAATCCCAATGAGCAGCTCTCATGGGCTGGTATTGAGATGGCCTCAATACTAAGAGAAGGAGATTCTACTTCGATAGAGCCTCCAGTAGCATGGGCTGGTCTCGCCATGGTCCACAGGGCCCAACATGAAATTGTGGCAGGATTTGAAGTTGAGCATAATGAATTGGTGGAAGTCAAGGAGCATGCTATCTATAGTCTAAAGCAG : GCAATAGCCGAAGATCCTGCTGATGCTGTTCAATGGCATCAGCTTGGCCTTCATAGTCTGTGTACCCAACAATTTAAGACGTCTCAAACGTACCTCAAAGCTGCAGTTGCACGCCGTAAGGACTGCACCTATGCCTGGTCAAATCTTG : GTATTTCACTGCAACTATCCGAGGAGTCTTCTCAAGCTGAATCGGTGTATAAACAAGCATTGTCACTAGCTACACCAAAACAAGCGCACACAATATTTTCAAACCTTGGAAATCTCTATCGGCAGCTAAAACAGTATGAATGTGCAAAGGCAATGTTCAATAAATCACTTGAACTGCAACCTGGATATGCACCTGCTTTAAACAATTTAGGTCTTGTATATGTTGCTGAAGGAAAGTGGAACGAAGCAAAGGACTCATTCGACAAGGCAATCCAGGCAGATCCATTGCTTGATGCTGCCAAATCCAACATGATTAAAGCTTCTAACATGCTCAACATGTATACCAGCATGTCATGATGTCTGCGATTCGTTCTATTAAAAATTTGTCCCCCTGTAATTATTTAGGTGGCGGGAGAAAAAAAGAAGGGTAGATCTTAAGATTTGGTAATATCAGCTTTTTTGGATTTTAGTTTGTTAAACTTAGCTCCTTCTGGAGTTTTAGCAAAGTAGAGATTCTTTCCAAAATACTGATGTC</gDNA_template>
            <first_frame> F  C  R  S  S  H  C  S  Q  C  C  Q  R  V  F  T  S  S  F  K  S  R  L  E  S  G  S  H  L  D  K  S  S  *  C  L  L  L  D  G  *  S  *  E  L  C  K  M  L  G  K   : G  R  K  N  *  S  *  L  F  S  D  K  I  C  G  W  S  S  P  H  Q  G  C  R  E  V  P  E  S  Q  *  A  A  L  M  G  W  Y  *  D  G  L  N  T  K  R  R  R  F  Y  F  D  R  A  S  S  S  M  G  W  S  R  H  G  P  Q  G  P  T  *  N  C  G  R  I  *  S  *  A  *  *  I  G  G  S  Q  G  A  C  Y  L  *  S  K  A   : G  N  S  R  R  S  C  *  C  C  S  M  A  S  A  W  P  S  *  S  V  Y  P  T  I  *  D  V  S  N  V  P  Q  S  C  S  C  T  P  *  G  L  H  L  C  L  V  K  S  W :   Y  F  T  A  T  I  R  G  V  F  S  S  *  I  G  V  *  T  S  I  V  T  S  Y  T  K  T  S  A  H  N  I  F  K  P  W  K  S  L  S  A  A  K  T  V  *  M  C  K  G  N  V  Q  *  I  T  *  T  A  T  W  I  C  T  C  F  K  Q  F  R  S  C  I  C  C  *  R  K  V  E  R  S  K  G  L  I  R  Q  G  N  P  G  R  S  I  A  *  C  C  Q  I  Q  H  D  *  S  F  *  H  A  Q  H  V  Y  Q  H  V  M  M  S  A  I  R  S  I  K  N  L  S  P  C  N  Y  L  G  G  G  R  K  K  E  G  *  I  L  R  F  G  N  I  S  F  F  G  F  *  F  V  K  L  S  S  F  W  S  F  S  K  V  E  I  L  S  K  I  L  M   </first_frame>
            <second_frame>  S  A  D  Q  V  T  A  A  N  V  A  K  E  C  L  L  A  A  L  K  A  D  S  K  A  A  H  I  W  T  N  L  A  N  A  Y  Y  L  M  G  D  H  R  S  S  A  K  C  L  E  K  :  A  G  K  I  D  P  N  C  L  A  T  R  Y  A  V  G  V  H  R  I  R  D  A  E  R  S  Q  N  P  N  E  Q  L  S  W  A  G  I  E  M  A  S  I  L  R  E  G  D  S  T  S  I  E  P  P  V  A  W  A  G  L  A  M  V  H  R  A  Q  H  E  I  V  A  G  F  E  V  E  H  N  E  L  V  E  V  K  E  H  A  I  Y  S  L  K  Q  :  A  I  A  E  D  P  A  D  A  V  Q  W  H  Q  L  G  L  H  S  L  C  T  Q  Q  F  K  T  S  Q  T  Y  L  K  A  A  V  A  R  R  K  D  C  T  Y  A  W  S  N  L   : G  I  S  L  Q  L  S  E  E  S  S  Q  A  E  S  V  Y  K  Q  A  L  S  L  A  T  P  K  Q  A  H  T  I  F  S  N  L  G  N  L  Y  R  Q  L  K  Q  Y  E  C  A  K  A  M  F  N  K  S  L  E  L  Q  P  G  Y  A  P  A  L  N  N  L  G  L  V  Y  V  A  E  G  K  W  N  E  A  K  D  S  F  D  K  A  I  Q  A  D  P  L  L  D  A  A  K  S  N  M  I  K  A  S  N  M  L  N  M  Y  T  S  M  S  *  C  L  R  F  V  L  L  K  I  C  P  P  V  I  I  *  V  A  G  E  K  K  K  G  R  S  *  D  L  V  I  S  A  F  L  D  F  S  L  L  N  L  A  P  S  G  V  L  A  K  *  R  F  F  P  K  Y  *  C  </second_frame>
            <third_frame>   L  Q  I  K  S  L  Q  P  M  L  P  K  S  V  Y  *  Q  L  *  K  Q  T  R  K  R  L  T  F  G  Q  I  *  L  M  L  I  T  *  W  V  I  I  G  A  L  Q  N  A  W  K  R :   Q  E  K  L  I  L  I  V  *  R  Q  D  M  R  L  E  F  T  A  S  G  M  Q  R  G  P  R  I  P  M  S  S  S  H  G  L  V  L  R  W  P  Q  Y  *  E  K  E  I  L  L  R  *  S  L  Q  *  H  G  L  V  S  P  W  S  T  G  P  N  M  K  L  W  Q  D  L  K  L  S  I  M  N  W  W  K  S  R  S  M  L  S  I  V  *  S  R :   Q  *  P  K  I  L  L  M  L  F  N  G  I  S  L  A  F  I  V  C  V  P  N  N  L  R  R  L  K  R  T  S  K  L  Q  L  H  A  V  R  T  A  P  M  P  G  Q  I  L  :  V  F  H  C  N  Y  P  R  S  L  L  K  L  N  R  C  I  N  K  H  C  H  *  L  H  Q  N  K  R  T  Q  Y  F  Q  T  L  E  I  S  I  G  S  *  N  S  M  N  V  Q  R  Q  C  S  I  N  H  L  N  C  N  L  D  M  H  L  L  *  T  I  *  V  L  Y  M  L  L  K  E  S  G  T  K  Q  R  T  H  S  T  R  Q  S  R  Q  I  H  C  L  M  L  P  N  P  T  *  L  K  L  L  T  C  S  T  C  I  P  A  C  H  D  V  C  D  S  F  Y  *  K  F  V  P  L  *  L  F  R  W  R  E  K  K  R  R  V  D  L  K  I  W  *  Y  Q  L  F  W  I  L  V  C  *  T  *  L  L  L  E  F  *  Q  S  R  D  S  F  Q  N  T  D  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0127C05.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="68826" stop="68674"/>
                    <exon start="68531" stop="68247"/>
                    <exon start="67839" stop="67692"/>
                    <exon start="67572" stop="67217"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>939</number_coding_nucleotides>
                  <number_encoded_amino_acids>313</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SADQVTAANVAKECLLAALKADSKAAHIWTNLANAYYLMGDHRSSAKCLEKAGKIDPNCLATRYAVGVHRIRDAERSQNPNEQLSWAGIEMASILREGDSTSIEPPVAWAGLAMVHRAQHEIVAGFEVEHNELVEVKEHAIYSLKQAIAEDPADAVQWHQLGLHSLCTQQFKTSQTYLKAAVARRKDCTYAWSNLGISLQLSEESSQAESVYKQALSLATPKQAHTIFSNLGNLYRQLKQYECAKAMFNKSLELQPGYAPALNNLGLVYVAEGKWNEAKDSFDKAIQADPLLDAAKSNMIKASNMLNMYTSMS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="74448" PGL_stop="71845"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="74448" e_stop="74253"/>
            <exon e_start="73408" e_stop="73195"/>
            <exon e_start="72319" e_stop="72227"/>
            <exon e_start="72151" e_stop="72050"/>
            <exon e_start="71926" e_stop="71845"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.484" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.903" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.820" acc_prob="0.434" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.967" e_score="1.000"/>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="74448" e_stop="74253" e_length="196"/>
          </exon>
          <intron i_serial="1" don_prob="0.484" acc_prob="1.000">
            <gDNA_intron_boundary i_start="74252" i_stop="73409" i_length="844"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="73408" e_stop="73195" e_length="214"/>
          </exon>
          <intron i_serial="2" don_prob="0.903" acc_prob="0.999">
            <gDNA_intron_boundary i_start="73194" i_stop="72320" i_length="875"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="72319" e_stop="72227" e_length="93"/>
          </exon>
          <intron i_serial="3" don_prob="0.820" acc_prob="0.434">
            <gDNA_intron_boundary i_start="72226" i_stop="72152" i_length="75"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="72151" e_stop="72050" e_length="102"/>
          </exon>
          <intron i_serial="4" don_prob="0.988" acc_prob="0.967">
            <gDNA_intron_boundary i_start="72049" i_stop="71927" i_length="123"/>
          </intron>
          <exon e_serial="5" e_score="0.988">
            <gDNA_exon_boundary e_start="71926" e_stop="71845" e_length="82"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74448" stop="74253"/>
              <exon start="73408" stop="73195"/>
              <exon start="72319" stop="72227"/>
              <exon start="72151" stop="72050"/>
              <exon start="71926" stop="71845"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U338127" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCAACTCCGTTAAAATTCCTTCAATGAAGTCAGAATCTCTCGTCGTTGACAGGAACTCCGGCTCCGTGAGGTTACAGCCACCACTTCAGTATCAGCCGTCGAAAATCGTTTTGGCTGACCTCAACGTTGACCCTCCTGATTCCGACGGCAATGATTCAGTACCCGTAGCTGCTGTGTCTCCTATATGTTTATCCAG : GGTAATAGCTGATGAAATTTGTCAGGATAAGCTGAAGAAAGACATAGAGATTGCAGAAACAGAAGGTAAACAATTGAAAAAATTGGGAAAATGCCGTTCAAGAATGGGTAAGTTAGAATGTCCTCCTGATTGTAATGGAGCTGATGCAGAGGCTGATCATAATGTTCATGGGGTCCCTTCATCTCGGGAAGAAAAAGTTAGCAGTCTTAAAACT : GGCTTGATACATGTTGCGCGAAAAATGCCAAAGAATGCACATGCACATTTTGTACTTGGCTTGATGTATCAAAGGATGGGTCAGCCTCAAAAG : GCGATTCTGGCATATGAGAAATCGGAAGAAATTTTAGTTCGCTCTGAGGAAGCAATAGACAGGCCTGAGTTGCTTTCTTTAGTCCAGGTTCATCATGCACAG : TGTATTCTGCTTGGAACCTTGGAAGATTGTAGTTCAGATGAGGAATTAGACCCTGAAGAGCTTGAAAATATTCTTGCTAAAC</gDNA_template>
            <first_frame> P  T  P  L  K  F  L  Q  *  S  Q  N  L  S  S  L  T  G  T  P  A  P  *  G  Y  S  H  H  F  S  I  S  R  R  K  S  F  W  L  T  S  T  L  T  L  L  I  P  T  A  M  I  Q  Y  P  *  L  L  C  L  L  Y  V  Y  P   : G  *  *  L  M  K  F  V  R  I  S  *  R  K  T  *  R  L  Q  K  Q  K  V  N  N  *  K  N  W  E  N  A  V  Q  E  W  V  S  *  N  V  L  L  I  V  M  E  L  M  Q  R  L  I  I  M  F  M  G  S  L  H  L  G  K  K  K  L  A  V  L  K  L :   A  *  Y  M  L  R  E  K  C  Q  R  M  H  M  H  I  L  Y  L  A  *  C  I  K  G  W  V  S  L  K  R :   R  F  W  H  M  R  N  R  K  K  F  *  F  A  L  R  K  Q  *  T  G  L  S  C  F  L  *  S  R  F  I  M  H  S :   V  F  C  L  E  P  W  K  I  V  V  Q  M  R  N  *  T  L  K  S  L  K  I  F  L  L  N </first_frame>
            <second_frame>  Q  L  R  *  N  S  F  N  E  V  R  I  S  R  R  *  Q  E  L  R  L  R  E  V  T  A  T  T  S  V  S  A  V  E  N  R  F  G  *  P  Q  R  *  P  S  *  F  R  R  Q  *  F  S  T  R  S  C  C  V  S  Y  M  F  I  Q  :  G  N  S  *  *  N  L  S  G  *  A  E  E  R  H  R  D  C  R  N  R  R  *  T  I  E  K  I  G  K  M  P  F  K  N  G  *  V  R  M  S  S  *  L  *  W  S  *  C  R  G  *  S  *  C  S  W  G  P  F  I  S  G  R  K  S  *  Q  S  *  N   : W  L  D  T  C  C  A  K  N  A  K  E  C  T  C  T  F  C  T  W  L  D  V  S  K  D  G  S  A  S  K   : G  D  S  G  I  *  E  I  G  R  N  F  S  S  L  *  G  S  N  R  Q  A  *  V  A  F  F  S  P  G  S  S  C  T   : V  Y  S  A  W  N  L  G  R  L  *  F  R  *  G  I  R  P  *  R  A  *  K  Y  S  C  *   </second_frame>
            <third_frame>   N  S  V  K  I  P  S  M  K  S  E  S  L  V  V  D  R  N  S  G  S  V  R  L  Q  P  P  L  Q  Y  Q  P  S  K  I  V  L  A  D  L  N  V  D  P  P  D  S  D  G  N  D  S  V  P  V  A  A  V  S  P  I  C  L  S  R :   V  I  A  D  E  I  C  Q  D  K  L  K  K  D  I  E  I  A  E  T  E  G  K  Q  L  K  K  L  G  K  C  R  S  R  M  G  K  L  E  C  P  P  D  C  N  G  A  D  A  E  A  D  H  N  V  H  G  V  P  S  S  R  E  E  K  V  S  S  L  K  T  :  G  L  I  H  V  A  R  K  M  P  K  N  A  H  A  H  F  V  L  G  L  M  Y  Q  R  M  G  Q  P  Q  K  :  A  I  L  A  Y  E  K  S  E  E  I  L  V  R  S  E  E  A  I  D  R  P  E  L  L  S  L  V  Q  V  H  H  A  Q  :  C  I  L  L  G  T  L  E  D  C  S  S  D  E  E  L  D  P  E  E  L  E  N  I  L  A  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0127C05.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="74446" stop="74253"/>
                    <exon start="73408" stop="73195"/>
                    <exon start="72319" stop="72227"/>
                    <exon start="72151" stop="72050"/>
                    <exon start="71926" stop="71846"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>684</number_coding_nucleotides>
                  <number_encoded_amino_acids>228</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NSVKIPSMKSESLVVDRNSGSVRLQPPLQYQPSKIVLADLNVDPPDSDGNDSVPVAAVSPICLSRVIADEICQDKLKKDIEIAETEGKQLKKLGKCRSRMGKLECPPDCNGADAEADHNVHGVPSSREEKVSSLKTGLIHVARKMPKNAHAHFVLGLMYQRMGQPQKAILAYEKSEEILVRSEEAIDRPELLSLVQVHHAQCILLGTLEDCSSDEELDPEELENILAK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="74448" e_stop="74253"/>
            <exon e_start="73408" e_stop="72879"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.484" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="74448" e_stop="74253" e_length="196"/>
          </exon>
          <intron i_serial="1" don_prob="0.484" acc_prob="1.000">
            <gDNA_intron_boundary i_start="74252" i_stop="73409" i_length="844"/>
          </intron>
          <exon e_serial="2" e_score="0.996">
            <gDNA_exon_boundary e_start="73408" e_stop="72879" e_length="530"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74448" stop="74253"/>
              <exon start="73408" stop="72879"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U325000" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCAACTCCGTTAAAATTCCTTCAATGAAGTCAGAATCTCTCGTCGTTGACAGGAACTCCGGCTCCGTGAGGTTACAGCCACCACTTCAGTATCAGCCGTCGAAAATCGTTTTGGCTGACCTCAACGTTGACCCTCCTGATTCCGACGGCAATGATTCAGTACCCGTAGCTGCTGTGTCTCCTATATGTTTATCCAG : GGTAATAGCTGATGAAATTTGTCAGGATAAGCTGAAGAAAGACATAGAGATTGCAGAAACAGAAGGTAAACAATTGAAAAAATTGGGAAAATGCCGTTCAAGAATGGGTAAGTTAGAATGTCCTCCTGATTGTAATGGAGCTGATGCAGAGGCTGATCATAATGTTCATGGGGTCCCTTCATCTCGGGAAGAAAAAGTTAGCAGTCTTAAAACTGTGAGTTGTATTTTGATCCATTTATATTTGCTATATTGATAGTTGGACAAGGTTGACAGGAAATTTTGCATGAACTCGAGTTCATTTATATGCACAACTTGTACATATTTCTTGAGACCAACTTGGTGTTTCATGATGAATATTTTGACTTATGTTTGTCTTTTGTTACCTAGATTTGTGTCTGTATCTATGTTTATATGAGAGCTAATCCTTTTAACTGTTTTCCATATCATATTTTTTCATCACTTGAATTGAATGCAGTGTTTTCAAATGCAAAAAGTGGGAAAGCAACAAAATCCACGGGACTTGAAACGAC</gDNA_template>
            <first_frame> P  T  P  L  K  F  L  Q  *  S  Q  N  L  S  S  L  T  G  T  P  A  P  *  G  Y  S  H  H  F  S  I  S  R  R  K  S  F  W  L  T  S  T  L  T  L  L  I  P  T  A  M  I  Q  Y  P  *  L  L  C  L  L  Y  V  Y  P   : G  *  *  L  M  K  F  V  R  I  S  *  R  K  T  *  R  L  Q  K  Q  K  V  N  N  *  K  N  W  E  N  A  V  Q  E  W  V  S  *  N  V  L  L  I  V  M  E  L  M  Q  R  L  I  I  M  F  M  G  S  L  H  L  G  K  K  K  L  A  V  L  K  L  *  V  V  F  *  S  I  Y  I  C  Y  I  D  S  W  T  R  L  T  G  N  F  A  *  T  R  V  H  L  Y  A  Q  L  V  H  I  S  *  D  Q  L  G  V  S  *  *  I  F  *  L  M  F  V  F  C  Y  L  D  L  C  L  Y  L  C  L  Y  E  S  *  S  F  *  L  F  S  I  S  Y  F  F  I  T  *  I  E  C  S  V  F  K  C  K  K  W  E  S  N  K  I  H  G  T  *  N  D </first_frame>
            <second_frame>  Q  L  R  *  N  S  F  N  E  V  R  I  S  R  R  *  Q  E  L  R  L  R  E  V  T  A  T  T  S  V  S  A  V  E  N  R  F  G  *  P  Q  R  *  P  S  *  F  R  R  Q  *  F  S  T  R  S  C  C  V  S  Y  M  F  I  Q  :  G  N  S  *  *  N  L  S  G  *  A  E  E  R  H  R  D  C  R  N  R  R  *  T  I  E  K  I  G  K  M  P  F  K  N  G  *  V  R  M  S  S  *  L  *  W  S  *  C  R  G  *  S  *  C  S  W  G  P  F  I  S  G  R  K  S  *  Q  S  *  N  C  E  L  Y  F  D  P  F  I  F  A  I  L  I  V  G  Q  G  *  Q  E  I  L  H  E  L  E  F  I  Y  M  H  N  L  Y  I  F  L  E  T  N  L  V  F  H  D  E  Y  F  D  L  C  L  S  F  V  T  *  I  C  V  C  I  Y  V  Y  M  R  A  N  P  F  N  C  F  P  Y  H  I  F  S  S  L  E  L  N  A  V  F  S  N  A  K  S  G  K  A  T  K  S  T  G  L  E  T   </second_frame>
            <third_frame>   N  S  V  K  I  P  S  M  K  S  E  S  L  V  V  D  R  N  S  G  S  V  R  L  Q  P  P  L  Q  Y  Q  P  S  K  I  V  L  A  D  L  N  V  D  P  P  D  S  D  G  N  D  S  V  P  V  A  A  V  S  P  I  C  L  S  R :   V  I  A  D  E  I  C  Q  D  K  L  K  K  D  I  E  I  A  E  T  E  G  K  Q  L  K  K  L  G  K  C  R  S  R  M  G  K  L  E  C  P  P  D  C  N  G  A  D  A  E  A  D  H  N  V  H  G  V  P  S  S  R  E  E  K  V  S  S  L  K  T  V  S  C  I  L  I  H  L  Y  L  L  Y  *  *  L  D  K  V  D  R  K  F  C  M  N  S  S  S  F  I  C  T  T  C  T  Y  F  L  R  P  T  W  C  F  M  M  N  I  L  T  Y  V  C  L  L  L  P  R  F  V  S  V  S  M  F  I  *  E  L  I  L  L  T  V  F  H  I  I  F  F  H  H  L  N  *  M  Q  C  F  Q  M  Q  K  V  G  K  Q  Q  N  P  R  D  L  K  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0127C05.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="74446" stop="74253"/>
                    <exon start="73408" stop="73156"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>444</number_coding_nucleotides>
                  <number_encoded_amino_acids>148</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NSVKIPSMKSESLVVDRNSGSVRLQPPLQYQPSKIVLADLNVDPPDSDGNDSVPVAAVSPICLSRVIADEICQDKLKKDIEIAETEGKQLKKLGKCRSRMGKLECPPDCNGADAEADHNVHGVPSSREEKVSSLKTVSCILIHLYLLY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="87874" PGL_stop="91474"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="87874" e_stop="87939"/>
            <exon e_start="88161" e_stop="88288"/>
            <exon e_start="90136" e_stop="90439"/>
            <exon e_start="90767" e_stop="91474"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.973" acc_prob="0.790" e_score="0.985"/>
          <exon-intron don_prob="0.997" acc_prob="0.974" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.985">
            <gDNA_exon_boundary e_start="87874" e_stop="87939" e_length="66"/>
          </exon>
          <intron i_serial="1" don_prob="0.973" acc_prob="0.790">
            <gDNA_intron_boundary i_start="87940" i_stop="88160" i_length="221"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="88161" e_stop="88288" e_length="128"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.974">
            <gDNA_intron_boundary i_start="88289" i_stop="90135" i_length="1847"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="90136" e_stop="90439" e_length="304"/>
          </exon>
          <intron i_serial="3" don_prob="0.994" acc_prob="0.999">
            <gDNA_intron_boundary i_start="90440" i_stop="90766" i_length="327"/>
          </intron>
          <exon e_serial="4" e_score="0.999">
            <gDNA_exon_boundary e_start="90767" e_stop="91474" e_length="708"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87874" stop="87939"/>
              <exon start="88161" stop="88288"/>
              <exon start="90136" stop="90439"/>
              <exon start="90767" stop="90817"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U344993" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90778" stop="91474"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U341418" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTGCTAGTGATGTTGACATCATCACCTCCGCCGGCCGTCGCATTCCGGCACATTCTAACGTTCTG : GCTGCTGCTTCGACGGTTCTGGAGAGCGTATTAGTTTGTCAACAGCGGAGTTTTGAGAAAAAGATACAGATTCTGGGCGTCCCCTGCGGCTCAGTTTACGTGTTCGTACAATTTCTCTATTCCTTCAA : GTGTACTAAAGATCAGATGGAGAAACATGGTATTCATCTACTAGCACTTTCTCATGTGTACTTAGTACCATGCCTAAAACACAGATGCACCAAAGCATTGGCTGAGCAATTGACAATTGAAAACGTCATAGACATGATTCAACTCGCGAGGCTATGTGATGCACCTCATCTCTATCTCAAATGTATGAAATTTTTGCGGAGTAATTTCAGCAAAGTTAAAAAAACTGAAGGCTGGAAGTTCCTTCAACGTCATGATCCCCTGCTTGAACTTGAAATTTTACAGTTCACTGATGAAGCCGAGTTG : CGGAAGAAGAGGAGGAGGAGACACACGCGGGAGCAGAACTTGTATTTACAGTTAAGTGAAGGGATGGATTGTTTGGAGCATATATGCAGGGAAGGGTGTACGAGCGTAGGGCCATATGACGAAGAGTACTCTTGCCAAAAGAAGTTGCCATGTAGCAAGTTTGATACATGCCAAGGTCTCCAGCTTTTGATTACACATTTCTCTACTTGTAAGAAAAGAGTAAAGGGAAGTTGTTCACAATGCAAGCGAATGTGGCAGCTCCTAAGGTTACACGCATCGATTTGTGACCAACCTGATGATTGTCGAGTTCCTCTTTGCAGGTATGGCCACCACTATATTTACTTGTACCTATATGTCATTTTCCGCCATTGCAGTTGTGATTTAGTCAGTACGTAGGAAGGTTATATACAATGCACATACATTTGTGATGTGGCTGAAACATTATCACGAGGAATTAAGATCTCTTGCCCACTTACAGTCAAGATAGTTCTTGATGTGAGCGCGACCCAATCATGATCTAAGTAGTGATAGTTGACTTGACACACGGTTGGTTCTATATCGACTAGATCGTAGAAAATAGTGTAACCTTTTTCTGAAATATTCATTTGGATCATTTATTTCTAGTTGAAAAATCTCTGTTTTCCCCCTGTTCCTAGTGAAAATATCTTCAAACTGTCCTAATAATCTTTTAACACGTTGGATTGAATA</gDNA_template>
            <first_frame> F  A  S  D  V  D  I  I  T  S  A  G  R  R  I  P  A  H  S  N  V  L  :  A  A  A  S  T  V  L  E  S  V  L  V  C  Q  Q  R  S  F  E  K  K  I  Q  I  L  G  V  P  C  G  S  V  Y  V  F  V  Q  F  L  Y  S  F  K :   C  T  K  D  Q  M  E  K  H  G  I  H  L  L  A  L  S  H  V  Y  L  V  P  C  L  K  H  R  C  T  K  A  L  A  E  Q  L  T  I  E  N  V  I  D  M  I  Q  L  A  R  L  C  D  A  P  H  L  Y  L  K  C  M  K  F  L  R  S  N  F  S  K  V  K  K  T  E  G  W  K  F  L  Q  R  H  D  P  L  L  E  L  E  I  L  Q  F  T  D  E  A  E  L  :  R  K  K  R  R  R  R  H  T  R  E  Q  N  L  Y  L  Q  L  S  E  G  M  D  C  L  E  H  I  C  R  E  G  C  T  S  V  G  P  Y  D  E  E  Y  S  C  Q  K  K  L  P  C  S  K  F  D  T  C  Q  G  L  Q  L  L  I  T  H  F  S  T  C  K  K  R  V  K  G  S  C  S  Q  C  K  R  M  W  Q  L  L  R  L  H  A  S  I  C  D  Q  P  D  D  C  R  V  P  L  C  R  Y  G  H  H  Y  I  Y  L  Y  L  Y  V  I  F  R  H  C  S  C  D  L  V  S  T  *  E  G  Y  I  Q  C  T  Y  I  C  D  V  A  E  T  L  S  R  G  I  K  I  S  C  P  L  T  V  K  I  V  L  D  V  S  A  T  Q  S  *  S  K  *  *  *  L  T  *  H  T  V  G  S  I  S  T  R  S  *  K  I  V  *  P  F  S  E  I  F  I  W  I  I  Y  F  *  L  K  N  L  C  F  P  P  V  P  S  E  N  I  F  K  L  S  *  *  S  F  N  T  L  D  *  I </first_frame>
            <second_frame>  L  L  V  M  L  T  S  S  P  P  P  A  V  A  F  R  H  I  L  T  F  W :   L  L  L  R  R  F  W  R  A  Y  *  F  V  N  S  G  V  L  R  K  R  Y  R  F  W  A  S  P  A  A  Q  F  T  C  S  Y  N  F  S  I  P  S   : S  V  L  K  I  R  W  R  N  M  V  F  I  Y  *  H  F  L  M  C  T  *  Y  H  A  *  N  T  D  A  P  K  H  W  L  S  N  *  Q  L  K  T  S  *  T  *  F  N  S  R  G  Y  V  M  H  L  I  S  I  S  N  V  *  N  F  C  G  V  I  S  A  K  L  K  K  L  K  A  G  S  S  F  N  V  M  I  P  C  L  N  L  K  F  Y  S  S  L  M  K  P  S  C :   G  R  R  G  G  G  D  T  R  G  S  R  T  C  I  Y  S  *  V  K  G  W  I  V  W  S  I  Y  A  G  K  G  V  R  A  *  G  H  M  T  K  S  T  L  A  K  R  S  C  H  V  A  S  L  I  H  A  K  V  S  S  F  *  L  H  I  S  L  L  V  R  K  E  *  R  E  V  V  H  N  A  S  E  C  G  S  S  *  G  Y  T  H  R  F  V  T  N  L  M  I  V  E  F  L  F  A  G  M  A  T  T  I  F  T  C  T  Y  M  S  F  S  A  I  A  V  V  I  *  S  V  R  R  K  V  I  Y  N  A  H  T  F  V  M  W  L  K  H  Y  H  E  E  L  R  S  L  A  H  L  Q  S  R  *  F  L  M  *  A  R  P  N  H  D  L  S  S  D  S  *  L  D  T  R  L  V  L  Y  R  L  D  R  R  K  *  C  N  L  F  L  K  Y  S  F  G  S  F  I  S  S  *  K  I  S  V  F  P  L  F  L  V  K  I  S  S  N  C  P  N  N  L  L  T  R  W  I  E   </second_frame>
            <third_frame>   C  *  *  C  *  H  H  H  L  R  R  P  S  H  S  G  T  F  *  R  S   : G  C  C  F  D  G  S  G  E  R  I  S  L  S  T  A  E  F  *  E  K  D  T  D  S  G  R  P  L  R  L  S  L  R  V  R  T  I  S  L  F  L  Q  :  V  Y  *  R  S  D  G  E  T  W  Y  S  S  T  S  T  F  S  C  V  L  S  T  M  P  K  T  Q  M  H  Q  S  I  G  *  A  I  D  N  *  K  R  H  R  H  D  S  T  R  E  A  M  *  C  T  S  S  L  S  Q  M  Y  E  I  F  A  E  *  F  Q  Q  S  *  K  N  *  R  L  E  V  P  S  T  S  *  S  P  A  *  T  *  N  F  T  V  H  *  *  S  R  V   : A  E  E  E  E  E  E  T  H  A  G  A  E  L  V  F  T  V  K  *  R  D  G  L  F  G  A  Y  M  Q  G  R  V  Y  E  R  R  A  I  *  R  R  V  L  L  P  K  E  V  A  M  *  Q  V  *  Y  M  P  R  S  P  A  F  D  Y  T  F  L  Y  L  *  E  K  S  K  G  K  L  F  T  M  Q  A  N  V  A  A  P  K  V  T  R  I  D  L  *  P  T  *  *  L  S  S  S  S  L  Q  V  W  P  P  L  Y  L  L  V  P  I  C  H  F  P  P  L  Q  L  *  F  S  Q  Y  V  G  R  L  Y  T  M  H  I  H  L  *  C  G  *  N  I  I  T  R  N  *  D  L  L  P  T  Y  S  Q  D  S  S  *  C  E  R  D  P  I  M  I  *  V  V  I  V  D  L  T  H  G  W  F  Y  I  D  *  I  V  E  N  S  V  T  F  F  *  N  I  H  L  D  H  L  F  L  V  E  K  S  L  F  S  P  C  S  *  *  K  Y  L  Q  T  V  L  I  I  F  *  H  V  G  L  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0127C05.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="87874" stop="87939"/>
                    <exon start="88161" stop="88288"/>
                    <exon start="90136" stop="90439"/>
                    <exon start="90767" stop="91162"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>891</number_coding_nucleotides>
                  <number_encoded_amino_acids>297</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FASDVDIITSAGRRIPAHSNVLAAASTVLESVLVCQQRSFEKKIQILGVPCGSVYVFVQFLYSFKCTKDQMEKHGIHLLALSHVYLVPCLKHRCTKALAEQLTIENVIDMIQLARLCDAPHLYLKCMKFLRSNFSKVKKTEGWKFLQRHDPLLELEILQFTDEAELRKKRRRRHTREQNLYLQLSEGMDCLEHICREGCTSVGPYDEEYSCQKKLPCSKFDTCQGLQLLITHFSTCKKRVKGSCSQCKRMWQLLRLHASICDQPDDCRVPLCRYGHHYIYLYLYVIFRHCSCDLVST*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="94450" PGL_stop="97915"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="94450" e_stop="94668"/>
            <exon e_start="94874" e_stop="95007"/>
            <exon e_start="95706" e_stop="96009"/>
            <exon e_start="96224" e_stop="96540"/>
            <exon e_start="97462" e_stop="97915"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.895" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.926" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.679" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="94450" e_stop="94668" e_length="219"/>
          </exon>
          <intron i_serial="1" don_prob="0.895" acc_prob="0.999">
            <gDNA_intron_boundary i_start="94669" i_stop="94873" i_length="205"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="94874" e_stop="95007" e_length="134"/>
          </exon>
          <intron i_serial="2" don_prob="0.986" acc_prob="0.926">
            <gDNA_intron_boundary i_start="95008" i_stop="95705" i_length="698"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="95706" e_stop="96009" e_length="304"/>
          </exon>
          <intron i_serial="3" don_prob="0.993" acc_prob="0.985">
            <gDNA_intron_boundary i_start="96010" i_stop="96223" i_length="214"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="96224" e_stop="96540" e_length="317"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.679">
            <gDNA_intron_boundary i_start="96541" i_stop="97461" i_length="921"/>
          </intron>
          <exon e_serial="5" e_score="0.996">
            <gDNA_exon_boundary e_start="97462" e_stop="97915" e_length="454"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94450" stop="94668"/>
              <exon start="94874" stop="95007"/>
              <exon start="95706" stop="96009"/>
              <exon start="96224" stop="96540"/>
              <exon start="97462" stop="97915"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U315867" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCAAATGGCAACTCTGCGCTGCTTATAAATAGAGAGGGTTGGGTTAATGCCTTCTTCAAAAACTAAACTCTCTGAAAATTCCCAAAAGCAACTGTAATCACTATGTCATCCCTTAACTTTTCAGACGGTATCGATAAATTTTCCGGCGAAATGTCTGAGGTTGATATCCAAATCGTCACCTCCGGCGGCCTCCGCATTCCGGCACATTCCGCCGTTCTG : GCTGCTGCTTCGACGGTTCTGGAGAACATACTAGCTCGGCCGGGAAAGCGGCGGAGCTCCGAGAGAACGATTCGGATTCTTGGCGTGCCGTGCGACGCCGTTTCCGTGTTTATCCGGTTTCTCTATTCTTTCAA : GTGCACTGAAGAGCAGATGAAGAGACATGGGATCCATCTGCTAGCACTTTCTCATGTGTACTTGGTACCGCAGCTGAAACAGAGATGCACAAAGGGGTTGGCCGAGCGATTGACGATTGAGAATGCTGTGGATTTGCTTCAACTTGCGAGACTATGTGATGCACCAGATCTATATCTTAAGAGTATGAAATTTTTGTCTAGTAATTTCAAGAAAGTTGAGGAGACTGAGGGCTGGAAATTCCTTCAACATCATGATCCCTGGCTTGAACTTGAAATTCTACAGTTCATGGATGAGGCTGAGTTG : CGGAAGAAGAGGACAAGGAGACACAAACTAGAGCGGAGCTTGTATTTACAGCTAAGCGAAGCGATGGATTGTTTGGAGCACATTTGCACTGAAGGATGTACTAGTGTGGGGCCATTAGATAAAGAACCTTCCATCAAGAGGCAGCCATGTAGCAAGTTTGATACCTGCCAAGGGCTTCAGTTTCTGATTCGACATTTTGCTACTTGTAAGAGAAGGACCAATGGAGGTTGTTTGCGATGCAAGCGCATGTGGCAGATCCTAAGATTACACGCATCCATTTGTGACCAACCAAACGATTGCCAGGTTCCCCTTTGCAG : ACAATTCAAATTGAAGGTGCAACAAAAGGGTGATGACGAGCTGTGGAAATCACTTGTTAGAAAGGTAGTGTCAGCCAGGGCAATGTCTTCTTTATCTCTGCCCAAAAGAAAGAGAGAAGAGGAACCGAAAATGGACTTTAACCATCATCAAGTGATGAACTTCAGATTGGCAGCTTAGTGTCAAAAGTGTGTGTTTCATATCGTAAGGCGAACTCGATCTTTGTAAATAGACCATCAATAGAATGTAATTTAGTTTTTACCATTTCATATTTCCTACTGTAGAGACCTATTCTATATGTTTATTTATTATTTCTGAGTCAGTCTTTTAGTAGATGAAGAGTGTTGTATCAGCAAAAGAGTTGTATACAAAAAGAGTAATTCTACAACTACTGTGTGGTAGTCTCTGTATATATATCTTCATTTTGTGTAATAAAATTAGCCAACTATATGCTTC</gDNA_template>
            <first_frame> A  N  G  N  S  A  L  L  I  N  R  E  G  W  V  N  A  F  F  K  N  *  T  L  *  K  F  P  K  A  T  V  I  T  M  S  S  L  N  F  S  D  G  I  D  K  F  S  G  E  M  S  E  V  D  I  Q  I  V  T  S  G  G  L  R  I  P  A  H  S  A  V  L  :  A  A  A  S  T  V  L  E  N  I  L  A  R  P  G  K  R  R  S  S  E  R  T  I  R  I  L  G  V  P  C  D  A  V  S  V  F  I  R  F  L  Y  S  F  K :   C  T  E  E  Q  M  K  R  H  G  I  H  L  L  A  L  S  H  V  Y  L  V  P  Q  L  K  Q  R  C  T  K  G  L  A  E  R  L  T  I  E  N  A  V  D  L  L  Q  L  A  R  L  C  D  A  P  D  L  Y  L  K  S  M  K  F  L  S  S  N  F  K  K  V  E  E  T  E  G  W  K  F  L  Q  H  H  D  P  W  L  E  L  E  I  L  Q  F  M  D  E  A  E  L  :  R  K  K  R  T  R  R  H  K  L  E  R  S  L  Y  L  Q  L  S  E  A  M  D  C  L  E  H  I  C  T  E  G  C  T  S  V  G  P  L  D  K  E  P  S  I  K  R  Q  P  C  S  K  F  D  T  C  Q  G  L  Q  F  L  I  R  H  F  A  T  C  K  R  R  T  N  G  G  C  L  R  C  K  R  M  W  Q  I  L  R  L  H  A  S  I  C  D  Q  P  N  D  C  Q  V  P  L  C  R :   Q  F  K  L  K  V  Q  Q  K  G  D  D  E  L  W  K  S  L  V  R  K  V  V  S  A  R  A  M  S  S  L  S  L  P  K  R  K  R  E  E  E  P  K  M  D  F  N  H  H  Q  V  M  N  F  R  L  A  A  *  C  Q  K  C  V  F  H  I  V  R  R  T  R  S  L  *  I  D  H  Q  *  N  V  I  *  F  L  P  F  H  I  S  Y  C  R  D  L  F  Y  M  F  I  Y  Y  F  *  V  S  L  L  V  D  E  E  C  C  I  S  K  R  V  V  Y  K  K  S  N  S  T  T  T  V  W  *  S  L  Y  I  Y  L  H  F  V  *  *  N  *  P  T  I  C  F </first_frame>
            <second_frame>  Q  M  A  T  L  R  C  L  *  I  E  R  V  G  L  M  P  S  S  K  T  K  L  S  E  N  S  Q  K  Q  L  *  S  L  C  H  P  L  T  F  Q  T  V  S  I  N  F  P  A  K  C  L  R  L  I  S  K  S  S  P  P  A  A  S  A  F  R  H  I  P  P  F  W :   L  L  L  R  R  F  W  R  T  Y  *  L  G  R  E  S  G  G  A  P  R  E  R  F  G  F  L  A  C  R  A  T  P  F  P  C  L  S  G  F  S  I  L  S   : S  A  L  K  S  R  *  R  D  M  G  S  I  C  *  H  F  L  M  C  T  W  Y  R  S  *  N  R  D  A  Q  R  G  W  P  S  D  *  R  L  R  M  L  W  I  C  F  N  L  R  D  Y  V  M  H  Q  I  Y  I  L  R  V  *  N  F  C  L  V  I  S  R  K  L  R  R  L  R  A  G  N  S  F  N  I  M  I  P  G  L  N  L  K  F  Y  S  S  W  M  R  L  S  C :   G  R  R  G  Q  G  D  T  N  *  S  G  A  C  I  Y  S  *  A  K  R  W  I  V  W  S  T  F  A  L  K  D  V  L  V  W  G  H  *  I  K  N  L  P  S  R  G  S  H  V  A  S  L  I  P  A  K  G  F  S  F  *  F  D  I  L  L  L  V  R  E  G  P  M  E  V  V  C  D  A  S  A  C  G  R  S  *  D  Y  T  H  P  F  V  T  N  Q  T  I  A  R  F  P  F  A   : D  N  S  N  *  R  C  N  K  R  V  M  T  S  C  G  N  H  L  L  E  R  *  C  Q  P  G  Q  C  L  L  Y  L  C  P  K  E  R  E  K  R  N  R  K  W  T  L  T  I  I  K  *  *  T  S  D  W  Q  L  S  V  K  S  V  C  F  I  S  *  G  E  L  D  L  C  K  *  T  I  N  R  M  *  F  S  F  Y  H  F  I  F  P  T  V  E  T  Y  S  I  C  L  F  I  I  S  E  S  V  F  *  *  M  K  S  V  V  S  A  K  E  L  Y  T  K  R  V  I  L  Q  L  L  C  G  S  L  C  I  Y  I  F  I  L  C  N  K  I  S  Q  L  Y  A   </second_frame>
            <third_frame>   K  W  Q  L  C  A  A  Y  K  *  R  G  L  G  *  C  L  L  Q  K  L  N  S  L  K  I  P  K  S  N  C  N  H  Y  V  I  P  *  L  F  R  R  Y  R  *  I  F  R  R  N  V  *  G  *  Y  P  N  R  H  L  R  R  P  P  H  S  G  T  F  R  R  S   : G  C  C  F  D  G  S  G  E  H  T  S  S  A  G  K  A  A  E  L  R  E  N  D  S  D  S  W  R  A  V  R  R  R  F  R  V  Y  P  V  S  L  F  F  Q  :  V  H  *  R  A  D  E  E  T  W  D  P  S  A  S  T  F  S  C  V  L  G  T  A  A  E  T  E  M  H  K  G  V  G  R  A  I  D  D  *  E  C  C  G  F  A  S  T  C  E  T  M  *  C  T  R  S  I  S  *  E  Y  E  I  F  V  *  *  F  Q  E  S  *  G  D  *  G  L  E  I  P  S  T  S  *  S  L  A  *  T  *  N  S  T  V  H  G  *  G  *  V   : A  E  E  E  D  K  E  T  Q  T  R  A  E  L  V  F  T  A  K  R  S  D  G  L  F  G  A  H  L  H  *  R  M  Y  *  C  G  A  I  R  *  R  T  F  H  Q  E  A  A  M  *  Q  V  *  Y  L  P  R  A  S  V  S  D  S  T  F  C  Y  L  *  E  K  D  Q  W  R  L  F  A  M  Q  A  H  V  A  D  P  K  I  T  R  I  H  L  *  P  T  K  R  L  P  G  S  P  L  Q  :  T  I  Q  I  E  G  A  T  K  G  *  *  R  A  V  E  I  T  C  *  K  G  S  V  S  Q  G  N  V  F  F  I  S  A  Q  K  K  E  R  R  G  T  E  N  G  L  *  P  S  S  S  D  E  L  Q  I  G  S  L  V  S  K  V  C  V  S  Y  R  K  A  N  S  I  F  V  N  R  P  S  I  E  C  N  L  V  F  T  I  S  Y  F  L  L  *  R  P  I  L  Y  V  Y  L  L  F  L  S  Q  S  F  S  R  *  R  V  L  Y  Q  Q  K  S  C  I  Q  K  E  *  F  Y  N  Y  C  V  V  V  S  V  Y  I  S  S  F  C  V  I  K  L  A  N  Y  M  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0127C05.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="94525" stop="94668"/>
                    <exon start="94874" stop="95007"/>
                    <exon start="95706" stop="96009"/>
                    <exon start="96224" stop="96540"/>
                    <exon start="97462" stop="97639"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1074</number_coding_nucleotides>
                  <number_encoded_amino_acids>358</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KFPKATVITMSSLNFSDGIDKFSGEMSEVDIQIVTSGGLRIPAHSAVLAAASTVLENILARPGKRRSSERTIRILGVPCDAVSVFIRFLYSFKCTEEQMKRHGIHLLALSHVYLVPQLKQRCTKGLAERLTIENAVDLLQLARLCDAPDLYLKSMKFLSSNFKKVEETEGWKFLQHHDPWLELEILQFMDEAELRKKRTRRHKLERSLYLQLSEAMDCLEHICTEGCTSVGPLDKEPSIKRQPCSKFDTCQGLQFLIRHFATCKRRTNGGCLRCKRMWQILRLHASICDQPNDCQVPLCRQFKLKVQQKGDDELWKSLVRKVVSARAMSSLSLPKRKREEEPKMDFNHHQVMNFRLAA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="94543" e_stop="94668"/>
            <exon e_start="94874" e_stop="94962"/>
            <exon e_start="95682" e_stop="96009"/>
            <exon e_start="96224" e_stop="96536"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.895" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.978"/>
          <exon-intron don_prob="0.993" acc_prob="0.985" e_score="0.963"/>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="94543" e_stop="94668" e_length="126"/>
          </exon>
          <intron i_serial="1" don_prob="0.895" acc_prob="0.999">
            <gDNA_intron_boundary i_start="94669" i_stop="94873" i_length="205"/>
          </intron>
          <exon e_serial="2" e_score="0.978">
            <gDNA_exon_boundary e_start="94874" e_stop="94962" e_length="89"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="94963" i_stop="95681" i_length="719"/>
          </intron>
          <exon e_serial="3" e_score="0.963">
            <gDNA_exon_boundary e_start="95682" e_stop="96009" e_length="328"/>
          </exon>
          <intron i_serial="3" don_prob="0.993" acc_prob="0.985">
            <gDNA_intron_boundary i_start="96010" i_stop="96223" i_length="214"/>
          </intron>
          <exon e_serial="4" e_score="0.994">
            <gDNA_exon_boundary e_start="96224" e_stop="96536" e_length="313"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94543" stop="94668"/>
              <exon start="94874" stop="94962"/>
              <exon start="95682" stop="96009"/>
              <exon start="96224" stop="96536"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335369" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTAATCACTATGTCATCCCTTAACTTTTCAGACGGTATCGATAAATTTTCCGGCGAAATGTCTGAGGTTGATATCCAAATCGTCACCTCCGGCGGCCTCCGCATTCCGGCACATTCCGCCGTTCTG : GCTGCTGCTTCGACGGTTCTGGAGAACATACTAGCTCGGCCGGGAAAGCGGCGGAGCTCCGAGAGAACGATTCGGATTCTTGGCGTGCC : TGACCAAATTGTCATTGTATTTAGGTGCACTGAAGAGCAGATGAAGAGACATGGGATCCATCTGCTAGCACTTTCTCATGTGTACTTGGTACCGCAGCTGAAACAGAGATGCACAAAGGGGTTGGCCGAGCGATTGACGATTGAGAATGCTGTGGATTTGCTTCAACTTGCGAGACTATGTGATGCACCAGATCTATATCTTAAGAGTATGAAATTTTTGTCTAGTAATTTCAAGAAAGTTGAGGAGACTGAGGGCTGGAAATTCCTTCAACATCATGATCCCTGGCTTGAACTTGAAATTCTACAGTTCATGGATGAGGCTGAGTTG : CGGAAGAAGAGGACAAGGAGACACAAACTAGAGCGGAGCTTGTATTTACAGCTAAGCGAAGCGATGGATTGTTTGGAGCACATTTGCACTGAAGGATGTACTAGTGTGGGGCCATTAGATAAAGAACCTTCCATCAAGAGGCAGCCATGTAGCAAGTTTGATACCTGCCAAGGGCTTCAGTTTCTGATTCGACATTTTGCTACTTGTAAGAGAAGGACCAATGGAGGTTGTTTGCGATGCAAGCGCATGTGGCAGATCCTAAGATTACACGCATCCATTTGTGACCAACCAAACGATTGCCAGGTTCCCCTTT</gDNA_template>
            <first_frame> V  I  T  M  S  S  L  N  F  S  D  G  I  D  K  F  S  G  E  M  S  E  V  D  I  Q  I  V  T  S  G  G  L  R  I  P  A  H  S  A  V  L  :  A  A  A  S  T  V  L  E  N  I  L  A  R  P  G  K  R  R  S  S  E  R  T  I  R  I  L  G  V  P :   D  Q  I  V  I  V  F  R  C  T  E  E  Q  M  K  R  H  G  I  H  L  L  A  L  S  H  V  Y  L  V  P  Q  L  K  Q  R  C  T  K  G  L  A  E  R  L  T  I  E  N  A  V  D  L  L  Q  L  A  R  L  C  D  A  P  D  L  Y  L  K  S  M  K  F  L  S  S  N  F  K  K  V  E  E  T  E  G  W  K  F  L  Q  H  H  D  P  W  L  E  L  E  I  L  Q  F  M  D  E  A  E  L  :  R  K  K  R  T  R  R  H  K  L  E  R  S  L  Y  L  Q  L  S  E  A  M  D  C  L  E  H  I  C  T  E  G  C  T  S  V  G  P  L  D  K  E  P  S  I  K  R  Q  P  C  S  K  F  D  T  C  Q  G  L  Q  F  L  I  R  H  F  A  T  C  K  R  R  T  N  G  G  C  L  R  C  K  R  M  W  Q  I  L  R  L  H  A  S  I  C  D  Q  P  N  D  C  Q  V  P  L  </first_frame>
            <second_frame>  *  S  L  C  H  P  L  T  F  Q  T  V  S  I  N  F  P  A  K  C  L  R  L  I  S  K  S  S  P  P  A  A  S  A  F  R  H  I  P  P  F  W :   L  L  L  R  R  F  W  R  T  Y  *  L  G  R  E  S  G  G  A  P  R  E  R  F  G  F  L  A  C   : L  T  K  L  S  L  Y  L  G  A  L  K  S  R  *  R  D  M  G  S  I  C  *  H  F  L  M  C  T  W  Y  R  S  *  N  R  D  A  Q  R  G  W  P  S  D  *  R  L  R  M  L  W  I  C  F  N  L  R  D  Y  V  M  H  Q  I  Y  I  L  R  V  *  N  F  C  L  V  I  S  R  K  L  R  R  L  R  A  G  N  S  F  N  I  M  I  P  G  L  N  L  K  F  Y  S  S  W  M  R  L  S  C :   G  R  R  G  Q  G  D  T  N  *  S  G  A  C  I  Y  S  *  A  K  R  W  I  V  W  S  T  F  A  L  K  D  V  L  V  W  G  H  *  I  K  N  L  P  S  R  G  S  H  V  A  S  L  I  P  A  K  G  F  S  F  *  F  D  I  L  L  L  V  R  E  G  P  M  E  V  V  C  D  A  S  A  C  G  R  S  *  D  Y  T  H  P  F  V  T  N  Q  T  I  A  R  F  P  F </second_frame>
            <third_frame>   N  H  Y  V  I  P  *  L  F  R  R  Y  R  *  I  F  R  R  N  V  *  G  *  Y  P  N  R  H  L  R  R  P  P  H  S  G  T  F  R  R  S   : G  C  C  F  D  G  S  G  E  H  T  S  S  A  G  K  A  A  E  L  R  E  N  D  S  D  S  W  R  A  :  *  P  N  C  H  C  I  *  V  H  *  R  A  D  E  E  T  W  D  P  S  A  S  T  F  S  C  V  L  G  T  A  A  E  T  E  M  H  K  G  V  G  R  A  I  D  D  *  E  C  C  G  F  A  S  T  C  E  T  M  *  C  T  R  S  I  S  *  E  Y  E  I  F  V  *  *  F  Q  E  S  *  G  D  *  G  L  E  I  P  S  T  S  *  S  L  A  *  T  *  N  S  T  V  H  G  *  G  *  V   : A  E  E  E  D  K  E  T  Q  T  R  A  E  L  V  F  T  A  K  R  S  D  G  L  F  G  A  H  L  H  *  R  M  Y  *  C  G  A  I  R  *  R  T  F  H  Q  E  A  A  M  *  Q  V  *  Y  L  P  R  A  S  V  S  D  S  T  F  C  Y  L  *  E  K  D  Q  W  R  L  F  A  M  Q  A  H  V  A  D  P  K  I  T  R  I  H  L  *  P  T  K  R  L  P  G  S  P   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0127C05.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="94543" stop="94668"/>
                    <exon start="94874" stop="94962"/>
                    <exon start="95682" stop="96009"/>
                    <exon start="96224" stop="96535"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>855</number_coding_nucleotides>
                  <number_encoded_amino_acids>285</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VITMSSLNFSDGIDKFSGEMSEVDIQIVTSGGLRIPAHSAVLAAASTVLENILARPGKRRSSERTIRILGVPDQIVIVFRCTEEQMKRHGIHLLALSHVYLVPQLKQRCTKGLAERLTIENAVDLLQLARLCDAPDLYLKSMKFLSSNFKKVEETEGWKFLQHHDPWLELEILQFMDEAELRKKRTRRHKLERSLYLQLSEAMDCLEHICTEGCTSVGPLDKEPSIKRQPCSKFDTCQGLQFLIRHFATCKRRTNGGCLRCKRMWQILRLHASICDQPNDCQVPL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="94523" e_stop="94668"/>
            <exon e_start="94915" e_stop="95007"/>
            <exon e_start="95706" e_stop="95724"/>
            <exon e_start="95779" e_stop="96009"/>
            <exon e_start="96224" e_stop="96540"/>
            <exon e_start="97462" e_stop="97517"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.895" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.926" e_score="0.860"/>
          <exon-intron don_prob="0.000" acc_prob="0.079" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.985" e_score="0.991"/>
          <exon-intron don_prob="0.999" acc_prob="0.679" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="94523" e_stop="94668" e_length="146"/>
          </exon>
          <intron i_serial="1" don_prob="0.895" acc_prob="0.000">
            <gDNA_intron_boundary i_start="94669" i_stop="94914" i_length="246"/>
          </intron>
          <exon e_serial="2" e_score="0.860">
            <gDNA_exon_boundary e_start="94915" e_stop="95007" e_length="93"/>
          </exon>
          <intron i_serial="2" don_prob="0.986" acc_prob="0.926">
            <gDNA_intron_boundary i_start="95008" i_stop="95705" i_length="698"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="95706" e_stop="95724" e_length="19"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.079">
            <gDNA_intron_boundary i_start="95725" i_stop="95778" i_length="54"/>
          </intron>
          <exon e_serial="4" e_score="0.991">
            <gDNA_exon_boundary e_start="95779" e_stop="96009" e_length="231"/>
          </exon>
          <intron i_serial="4" don_prob="0.993" acc_prob="0.985">
            <gDNA_intron_boundary i_start="96010" i_stop="96223" i_length="214"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="96224" e_stop="96540" e_length="317"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.679">
            <gDNA_intron_boundary i_start="96541" i_stop="97461" i_length="921"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="97462" e_stop="97517" e_length="56"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94523" stop="94668"/>
              <exon start="94915" stop="95007"/>
              <exon start="95706" stop="95724"/>
              <exon start="95779" stop="96009"/>
              <exon start="96224" stop="96540"/>
              <exon start="97462" stop="97517"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U315866" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAAAATTCCCAAAAGCAACTGTAATCACTATGTCATCCCTTAACTTTTCAGACGGTATCGATAAATTTTCCGGCGAAATGTCTGAGGTTGATATCCAAATCGTCACCTCCGGCGGCCTCCGCATTCCGGCACATTCCGCCGTTCTG : GGGAAAGCGGCGGAGCTCCGAGAGAACGATTCGGATTCTTGGCGTGCCGTGCGACGCCGTTTCCGTGTTTATCCGGTTTCTCTATTCTTTCAA : GTGCACTGAAGAGCAGATG : CTGAAACAGAGATGCACAAAGGGGTTGGCCGAGCGATTGACGATTGAGAATGCTGTGGATTTGCTTCAACTTGCGAGACTATGTGATGCACCAGATCTATATCTTAAGAGTATGAAATTTTTGTCTAGTAATTTCAAGAAAGTTGAGGAGACTGAGGGCTGGAAATTCCTTCAACATCATGATCCCTGGCTTGAACTTGAAATTCTACAGTTCATGGATGAGGCTGAGTTG : CGGAAGAAGAGGACAAGGAGACACAAACTAGAGCGGAGCTTGTATTTACAGCTAAGCGAAGCGATGGATTGTTTGGAGCACATTTGCACTGAAGGATGTACTAGTGTGGGGCCATTAGATAAAGAACCTTCCATCAAGAGGCAGCCATGTAGCAAGTTTGATACCTGCCAAGGGCTTCAGTTTCTGATTCGACATTTTGCTACTTGTAAGAGAAGGACCAATGGAGGTTGTTTGCGATGCAAGCGCATGTGGCAGATCCTAAGATTACACGCATCCATTTGTGACCAACCAAACGATTGCCAGGTTCCCCTTTGCAG : ACAATTCAAATTGAAGGTGCAACAAAAGGGTGATGACGAGCTGTGGAAATCACTTG</gDNA_template>
            <first_frame> E  N  S  Q  K  Q  L  *  S  L  C  H  P  L  T  F  Q  T  V  S  I  N  F  P  A  K  C  L  R  L  I  S  K  S  S  P  P  A  A  S  A  F  R  H  I  P  P  F  W :   G  K  R  R  S  S  E  R  T  I  R  I  L  G  V  P  C  D  A  V  S  V  F  I  R  F  L  Y  S  F  K :   C  T  E  E  Q  M  :  L  K  Q  R  C  T  K  G  L  A  E  R  L  T  I  E  N  A  V  D  L  L  Q  L  A  R  L  C  D  A  P  D  L  Y  L  K  S  M  K  F  L  S  S  N  F  K  K  V  E  E  T  E  G  W  K  F  L  Q  H  H  D  P  W  L  E  L  E  I  L  Q  F  M  D  E  A  E  L  :  R  K  K  R  T  R  R  H  K  L  E  R  S  L  Y  L  Q  L  S  E  A  M  D  C  L  E  H  I  C  T  E  G  C  T  S  V  G  P  L  D  K  E  P  S  I  K  R  Q  P  C  S  K  F  D  T  C  Q  G  L  Q  F  L  I  R  H  F  A  T  C  K  R  R  T  N  G  G  C  L  R  C  K  R  M  W  Q  I  L  R  L  H  A  S  I  C  D  Q  P  N  D  C  Q  V  P  L  C  R :   Q  F  K  L  K  V  Q  Q  K  G  D  D  E  L  W  K  S  L  </first_frame>
            <second_frame>  K  I  P  K  S  N  C  N  H  Y  V  I  P  *  L  F  R  R  Y  R  *  I  F  R  R  N  V  *  G  *  Y  P  N  R  H  L  R  R  P  P  H  S  G  T  F  R  R  S   : G  E  S  G  G  A  P  R  E  R  F  G  F  L  A  C  R  A  T  P  F  P  C  L  S  G  F  S  I  L  S   : S  A  L  K  S  R  C :   *  N  R  D  A  Q  R  G  W  P  S  D  *  R  L  R  M  L  W  I  C  F  N  L  R  D  Y  V  M  H  Q  I  Y  I  L  R  V  *  N  F  C  L  V  I  S  R  K  L  R  R  L  R  A  G  N  S  F  N  I  M  I  P  G  L  N  L  K  F  Y  S  S  W  M  R  L  S  C :   G  R  R  G  Q  G  D  T  N  *  S  G  A  C  I  Y  S  *  A  K  R  W  I  V  W  S  T  F  A  L  K  D  V  L  V  W  G  H  *  I  K  N  L  P  S  R  G  S  H  V  A  S  L  I  P  A  K  G  F  S  F  *  F  D  I  L  L  L  V  R  E  G  P  M  E  V  V  C  D  A  S  A  C  G  R  S  *  D  Y  T  H  P  F  V  T  N  Q  T  I  A  R  F  P  F  A   : D  N  S  N  *  R  C  N  K  R  V  M  T  S  C  G  N  H  L </second_frame>
            <third_frame>   K  F  P  K  A  T  V  I  T  M  S  S  L  N  F  S  D  G  I  D  K  F  S  G  E  M  S  E  V  D  I  Q  I  V  T  S  G  G  L  R  I  P  A  H  S  A  V  L  :  G  K  A  A  E  L  R  E  N  D  S  D  S  W  R  A  V  R  R  R  F  R  V  Y  P  V  S  L  F  F  Q  :  V  H  *  R  A  D   : A  E  T  E  M  H  K  G  V  G  R  A  I  D  D  *  E  C  C  G  F  A  S  T  C  E  T  M  *  C  T  R  S  I  S  *  E  Y  E  I  F  V  *  *  F  Q  E  S  *  G  D  *  G  L  E  I  P  S  T  S  *  S  L  A  *  T  *  N  S  T  V  H  G  *  G  *  V   : A  E  E  E  D  K  E  T  Q  T  R  A  E  L  V  F  T  A  K  R  S  D  G  L  F  G  A  H  L  H  *  R  M  Y  *  C  G  A  I  R  *  R  T  F  H  Q  E  A  A  M  *  Q  V  *  Y  L  P  R  A  S  V  S  D  S  T  F  C  Y  L  *  E  K  D  Q  W  R  L  F  A  M  Q  A  H  V  A  D  P  K  I  T  R  I  H  L  *  P  T  K  R  L  P  G  S  P  L  Q  :  T  I  Q  I  E  G  A  T  K  G  *  *  R  A  V  E  I  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0127C05.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="94547" stop="94668"/>
                    <exon start="94915" stop="95007"/>
                    <exon start="95706" stop="95724"/>
                    <exon start="95779" stop="96009"/>
                    <exon start="96224" stop="96540"/>
                    <exon start="97462" stop="97516"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>837</number_coding_nucleotides>
                  <number_encoded_amino_acids>279</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SLCHPLTFQTVSINFPAKCLRLISKSSPPAASAFRHIPPFWGKRRSSERTIRILGVPCDAVSVFIRFLYSFKCTEEQMLKQRCTKGLAERLTIENAVDLLQLARLCDAPDLYLKSMKFLSSNFKKVEETEGWKFLQHHDPWLELEILQFMDEAELRKKRTRRHKLERSLYLQLSEAMDCLEHICTEGCTSVGPLDKEPSIKRQPCSKFDTCQGLQFLIRHFATCKRRTNGGCLRCKRMWQILRLHASICDQPNDCQVPLCRQFKLKVQQKGDDELWKSL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="103359" PGL_stop="101274"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="103359" e_stop="101274"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="103359" e_stop="101274" e_length="2086"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103359" stop="101274"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U322115" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTAGAAAAAAAAAAAATCCATCAACCACCACAGTTTCCCTCGTTCACCTCTCTCCTCCCTCTCTGTCCGGTTTACCGGAAAAACAAGAATCTCAAATGACTTCGAATATCCACTTTTTTCTTTTATACGTTGTGAGCCTTTTCCTTTTTGTTCAAGCAAGATTGAATCTTTATCCACCAGATCATGCTGCACTCTTGCTTGTACAAAAGGACTTAGGCATCATTTCTGTTAACAACCCGTGTACGCTCGCAGGAATATCGTGCGAGCGTAGACCGGGTAACACAACACAAGTTGTGAGAGTTACCCGTATTGTATTCAGATCCAACGGATTAAAGGGAACTTTGTCTTCTGCTATTGGCAAACTCACTGAGCTCAAAGAGCTTTCTCTTTCCGACAATCAACTATCTGAACAAATCCCCGTTCAGATTATTGATTGTCGGAAGTTAGAGATTCTTCAACTTCAAAGGAACAGATTTTCTGGGAAGATTCCATCCGAATTGTCAGCTTTAAACCGTTTAAGGATAGTTGACTTTTCATCGAATGAGTTTTCGGGGAATCTTGATTTCTTGAAGTACTTTCCTAATCTGGAAAAACTGTCTCTGGCTGATAATATGTTCACTGGAAAAATACCATTTTCATTGAAATCTTTCCGAAATCTTCGTTTTCTCAACATTTCAGGGAATAGTTTCCTTGAAGGTCCAGTACCTGTCATGAGCCAAATTGAGCATTTATCAGCAGATTTGAATCGAAAAAATGGCGTTCCTAAACGTTACATTCTAGCTGAGAATTCAACAAGGATATCTGCAATGGGACCTGCTTCGGTTCCAGCTCCAGCTCCAGCACCTGTCAATCGTGTTGTACCGGCGATGCATAAACGTAAGAACAAGAAAAGGAAGTTACGATCTTGGTTTCTTGGTTTCCTAGCTGGAACTTTTGCTGGGGGTATATCTGCTGTGCTCTGTTCCTTGCTATTCAAGATGGTAATGTTCTTCGTAAGAAGAGGGAATAACGATTCAAGTTTAACGATATACAGTCCACTGATCAAGAAAGCCGAGGACTTGGCTTTCTTAGAGAAGGAAGATGGAGTGGCATCGCTTGAAATGATTGGAAAAGGTGGCTGTGGAGAAGTTTATAGAGCAGAGCTACCGGGGAGTAATGGGAAGATTATAGCTATAAAGAAGATTATCCAATCCCCAATGGATGCTGCAGAGATCACGGAGGAAGATACTAAGGCGTTGAACAAGAAAATGCGTCAAGTTAAATCAGAAATTCAAATTGTAGGTCAAATCAGACACCGGAATCTGCTTCCATTACTCGCGCATATGCCAAGGCCAGACTGTCATTACTTGGTCTACGAATACATGAAAAATGGGAGTTTACAGGATATCCTGCAGCAAGTCACAGAAGGCACAAGGGAATTAGATTGGTTGGGACGACACAGAATTGCAGCGGGGGTAGCTGCTGGTCTCGAGTATCTCCATATAAACCATACTCAACGCATAATTCACAGAGATTTAAAGCCAGCAAATATCCTACTTGATGATGACATGGAAGCTCGAGTTGCTGATTTTGGCCTTGCAAAGGCAGTTCCAGATGCTCATACACATATCACCACTTCAAATGTTGCAGGAACTGTTGGATTTATTGCACCAGAATATTATCAGACACTGAAGTTTACAGATAAGTGTGATATATACAGCTTTGGTGTGGTGCTAGCTGTGTTGGTTATCGGTAAGGGTCCATCGGATGATTTTTTCCAACATACTTCTGAGATGAGTTTAGTTAAGTGGCTGAGGAATGTAATGACTTCTGACGATCCTAAAATAGCAATTGATCCTAAGCTTATAGGAAATGGATACGACGAACAAATGCTTTTGGTTCTCAAGATAGCTTGCTTTTGTACTCTCGACAATCCAAAGGAGAGGCCTAACAGTAAGGATGTTAGGTGCATGTTAACTCAGATCAAGCATTAGATAACCAATACACTGGTTATGTAACTAAGAATCTGTTCTGTATTTTCAGTTTCGCAAGTTGATATTTTGTTGTAATTGTGTTATACATGTCAAATCAATATTCATTCCACCTT</gDNA_template>
            <first_frame> L  E  K  K  K  I  H  Q  P  P  Q  F  P  S  F  T  S  L  L  P  L  C  P  V  Y  R  K  N  K  N  L  K  *  L  R  I  S  T  F  F  F  Y  T  L  *  A  F  S  F  L  F  K  Q  D  *  I  F  I  H  Q  I  M  L  H  S  C  L  Y  K  R  T  *  A  S  F  L  L  T  T  R  V  R  S  Q  E  Y  R  A  S  V  D  R  V  T  Q  H  K  L  *  E  L  P  V  L  Y  S  D  P  T  D  *  R  E  L  C  L  L  L  L  A  N  S  L  S  S  K  S  F  L  F  P  T  I  N  Y  L  N  K  S  P  F  R  L  L  I  V  G  S  *  R  F  F  N  F  K  G  T  D  F  L  G  R  F  H  P  N  C  Q  L  *  T  V  *  G  *  L  T  F  H  R  M  S  F  R  G  I  L  I  S  *  S  T  F  L  I  W  K  N  C  L  W  L  I  I  C  S  L  E  K  Y  H  F  H  *  N  L  S  E  I  F  V  F  S  T  F  Q  G  I  V  S  L  K  V  Q  Y  L  S  *  A  K  L  S  I  Y  Q  Q  I  *  I  E  K  M  A  F  L  N  V  T  F  *  L  R  I  Q  Q  G  Y  L  Q  W  D  L  L  R  F  Q  L  Q  L  Q  H  L  S  I  V  L  Y  R  R  C  I  N  V  R  T  R  K  G  S  Y  D  L  G  F  L  V  S  *  L  E  L  L  L  G  V  Y  L  L  C  S  V  P  C  Y  S  R  W  *  C  S  S  *  E  E  G  I  T  I  Q  V  *  R  Y  T  V  H  *  S  R  K  P  R  T  W  L  S  *  R  R  K  M  E  W  H  R  L  K  *  L  E  K  V  A  V  E  K  F  I  E  Q  S  Y  R  G  V  M  G  R  L  *  L  *  R  R  L  S  N  P  Q  W  M  L  Q  R  S  R  R  K  I  L  R  R  *  T  R  K  C  V  K  L  N  Q  K  F  K  L  *  V  K  S  D  T  G  I  C  F  H  Y  S  R  I  C  Q  G  Q  T  V  I  T  W  S  T  N  T  *  K  M  G  V  Y  R  I  S  C  S  K  S  Q  K  A  Q  G  N  *  I  G  W  D  D  T  E  L  Q  R  G  *  L  L  V  S  S  I  S  I  *  T  I  L  N  A  *  F  T  E  I  *  S  Q  Q  I  S  Y  L  M  M  T  W  K  L  E  L  L  I  L  A  L  Q  R  Q  F  Q  M  L  I  H  I  S  P  L  Q  M  L  Q  E  L  L  D  L  L  H  Q  N  I  I  R  H  *  S  L  Q  I  S  V  I  Y  T  A  L  V  W  C  *  L  C  W  L  S  V  R  V  H  R  M  I  F  S  N  I  L  L  R  *  V  *  L  S  G  *  G  M  *  *  L  L  T  I  L  K  *  Q  L  I  L  S  L  *  E  M  D  T  T  N  K  C  F  W  F  S  R  *  L  A  F  V  L  S  T  I  Q  R  R  G  L  T  V  R  M  L  G  A  C  *  L  R  S  S  I  R  *  P  I  H  W  L  C  N  *  E  S  V  L  Y  F  Q  F  R  K  L  I  F  C  C  N  C  V  I  H  V  K  S  I  F  I  P  P  </first_frame>
            <second_frame>  *  K  K  K  K  S  I  N  H  H  S  F  P  R  S  P  L  S  S  L  S  V  R  F  T  G  K  T  R  I  S  N  D  F  E  Y  P  L  F  S  F  I  R  C  E  P  F  P  F  C  S  S  K  I  E  S  L  S  T  R  S  C  C  T  L  A  C  T  K  G  L  R  H  H  F  C  *  Q  P  V  Y  A  R  R  N  I  V  R  A  *  T  G  *  H  N  T  S  C  E  S  Y  P  Y  C  I  Q  I  Q  R  I  K  G  N  F  V  F  C  Y  W  Q  T  H  *  A  Q  R  A  F  S  F  R  Q  S  T  I  *  T  N  P  R  S  D  Y  *  L  S  E  V  R  D  S  S  T  S  K  E  Q  I  F  W  E  D  S  I  R  I  V  S  F  K  P  F  K  D  S  *  L  F  I  E  *  V  F  G  E  S  *  F  L  E  V  L  S  *  S  G  K  T  V  S  G  *  *  Y  V  H  W  K  N  T  I  F  I  E  I  F  P  K  S  S  F  S  Q  H  F  R  E  *  F  P  *  R  S  S  T  C  H  E  P  N  *  A  F  I  S  R  F  E  S  K  K  W  R  S  *  T  L  H  S  S  *  E  F  N  K  D  I  C  N  G  T  C  F  G  S  S  S  S  S  S  T  C  Q  S  C  C  T  G  D  A  *  T  *  E  Q  E  K  E  V  T  I  L  V  S  W  F  P  S  W  N  F  C  W  G  Y  I  C  C  A  L  F  L  A  I  Q  D  G  N  V  L  R  K  K  R  E  *  R  F  K  F  N  D  I  Q  S  T  D  Q  E  S  R  G  L  G  F  L  R  E  G  R  W  S  G  I  A  *  N  D  W  K  R  W  L  W  R  S  L  *  S  R  A  T  G  E  *  W  E  D  Y  S  Y  K  E  D  Y  P  I  P  N  G  C  C  R  D  H  G  G  R  Y  *  G  V  E  Q  E  N  A  S  S  *  I  R  N  S  N  C  R  S  N  Q  T  P  E  S  A  S  I  T  R  A  Y  A  K  A  R  L  S  L  L  G  L  R  I  H  E  K  W  E  F  T  G  Y  P  A  A  S  H  R  R  H  K  G  I  R  L  V  G  T  T  Q  N  C  S  G  G  S  C  W  S  R  V  S  P  Y  K  P  Y  S  T  H  N  S  Q  R  F  K  A  S  K  Y  P  T  *  *  *  H  G  S  S  S  C  *  F  W  P  C  K  G  S  S  R  C  S  Y  T  Y  H  H  F  K  C  C  R  N  C  W  I  Y  C  T  R  I  L  S  D  T  E  V  Y  R  *  V  *  Y  I  Q  L  W  C  G  A  S  C  V  G  Y  R  *  G  S  I  G  *  F  F  P  T  Y  F  *  D  E  F  S  *  V  A  E  E  C  N  D  F  *  R  S  *  N  S  N  *  S  *  A  Y  R  K  W  I  R  R  T  N  A  F  G  S  Q  D  S  L  L  L  Y  S  R  Q  S  K  G  E  A  *  Q  *  G  C  *  V  H  V  N  S  D  Q  A  L  D  N  Q  Y  T  G  Y  V  T  K  N  L  F  C  I  F  S  F  A  S  *  Y  F  V  V  I  V  L  Y  M  S  N  Q  Y  S  F  H  L </second_frame>
            <third_frame>   R  K  K  K  N  P  S  T  T  T  V  S  L  V  H  L  S  P  P  S  L  S  G  L  P  E  K  Q  E  S  Q  M  T  S  N  I  H  F  F  L  L  Y  V  V  S  L  F  L  F  V  Q  A  R  L  N  L  Y  P  P  D  H  A  A  L  L  L  V  Q  K  D  L  G  I  I  S  V  N  N  P  C  T  L  A  G  I  S  C  E  R  R  P  G  N  T  T  Q  V  V  R  V  T  R  I  V  F  R  S  N  G  L  K  G  T  L  S  S  A  I  G  K  L  T  E  L  K  E  L  S  L  S  D  N  Q  L  S  E  Q  I  P  V  Q  I  I  D  C  R  K  L  E  I  L  Q  L  Q  R  N  R  F  S  G  K  I  P  S  E  L  S  A  L  N  R  L  R  I  V  D  F  S  S  N  E  F  S  G  N  L  D  F  L  K  Y  F  P  N  L  E  K  L  S  L  A  D  N  M  F  T  G  K  I  P  F  S  L  K  S  F  R  N  L  R  F  L  N  I  S  G  N  S  F  L  E  G  P  V  P  V  M  S  Q  I  E  H  L  S  A  D  L  N  R  K  N  G  V  P  K  R  Y  I  L  A  E  N  S  T  R  I  S  A  M  G  P  A  S  V  P  A  P  A  P  A  P  V  N  R  V  V  P  A  M  H  K  R  K  N  K  K  R  K  L  R  S  W  F  L  G  F  L  A  G  T  F  A  G  G  I  S  A  V  L  C  S  L  L  F  K  M  V  M  F  F  V  R  R  G  N  N  D  S  S  L  T  I  Y  S  P  L  I  K  K  A  E  D  L  A  F  L  E  K  E  D  G  V  A  S  L  E  M  I  G  K  G  G  C  G  E  V  Y  R  A  E  L  P  G  S  N  G  K  I  I  A  I  K  K  I  I  Q  S  P  M  D  A  A  E  I  T  E  E  D  T  K  A  L  N  K  K  M  R  Q  V  K  S  E  I  Q  I  V  G  Q  I  R  H  R  N  L  L  P  L  L  A  H  M  P  R  P  D  C  H  Y  L  V  Y  E  Y  M  K  N  G  S  L  Q  D  I  L  Q  Q  V  T  E  G  T  R  E  L  D  W  L  G  R  H  R  I  A  A  G  V  A  A  G  L  E  Y  L  H  I  N  H  T  Q  R  I  I  H  R  D  L  K  P  A  N  I  L  L  D  D  D  M  E  A  R  V  A  D  F  G  L  A  K  A  V  P  D  A  H  T  H  I  T  T  S  N  V  A  G  T  V  G  F  I  A  P  E  Y  Y  Q  T  L  K  F  T  D  K  C  D  I  Y  S  F  G  V  V  L  A  V  L  V  I  G  K  G  P  S  D  D  F  F  Q  H  T  S  E  M  S  L  V  K  W  L  R  N  V  M  T  S  D  D  P  K  I  A  I  D  P  K  L  I  G  N  G  Y  D  E  Q  M  L  L  V  L  K  I  A  C  F  C  T  L  D  N  P  K  E  R  P  N  S  K  D  V  R  C  M  L  T  Q  I  K  H  *  I  T  N  T  L  V  M  *  L  R  I  C  S  V  F  S  V  S  Q  V  D  I  L  L  *  L  C  Y  T  C  Q  I  N  I  H  S  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0127C05.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="103357" stop="101387"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1968</number_coding_nucleotides>
                  <number_encoded_amino_acids>656</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RKKKNPSTTTVSLVHLSPPSLSGLPEKQESQMTSNIHFFLLYVVSLFLFVQARLNLYPPDHAALLLVQKDLGIISVNNPCTLAGISCERRPGNTTQVVRVTRIVFRSNGLKGTLSSAIGKLTELKELSLSDNQLSEQIPVQIIDCRKLEILQLQRNRFSGKIPSELSALNRLRIVDFSSNEFSGNLDFLKYFPNLEKLSLADNMFTGKIPFSLKSFRNLRFLNISGNSFLEGPVPVMSQIEHLSADLNRKNGVPKRYILAENSTRISAMGPASVPAPAPAPVNRVVPAMHKRKNKKRKLRSWFLGFLAGTFAGGISAVLCSLLFKMVMFFVRRGNNDSSLTIYSPLIKKAEDLAFLEKEDGVASLEMIGKGGCGEVYRAELPGSNGKIIAIKKIIQSPMDAAEITEEDTKALNKKMRQVKSEIQIVGQIRHRNLLPLLAHMPRPDCHYLVYEYMKNGSLQDILQQVTEGTRELDWLGRHRIAAGVAAGLEYLHINHTQRIIHRDLKPANILLDDDMEARVADFGLAKAVPDAHTHITTSNVAGTVGFIAPEYYQTLKFTDKCDIYSFGVVLAVLVIGKGPSDDFFQHTSEMSLVKWLRNVMTSDDPKIAIDPKLIGNGYDEQMLLVLKIACFCTLDNPKERPNSKDVRCMLTQIKH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="+" PGL_start="113559" PGL_stop="116161"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="113559" e_stop="113879"/>
            <exon e_start="114789" e_stop="114826"/>
            <exon e_start="115386" e_stop="115613"/>
            <exon e_start="115739" e_stop="115962"/>
            <exon e_start="116075" e_stop="116161"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.974" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.900" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.970" e_score="0.991"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="113559" e_stop="113879" e_length="321"/>
          </exon>
          <intron i_serial="1" don_prob="0.974" acc_prob="0.998">
            <gDNA_intron_boundary i_start="113880" i_stop="114788" i_length="909"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="114789" e_stop="114826" e_length="38"/>
          </exon>
          <intron i_serial="2" don_prob="0.900" acc_prob="0.984">
            <gDNA_intron_boundary i_start="114827" i_stop="115385" i_length="559"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="115386" e_stop="115613" e_length="228"/>
          </exon>
          <intron i_serial="3" don_prob="0.993" acc_prob="0.996">
            <gDNA_intron_boundary i_start="115614" i_stop="115738" i_length="125"/>
          </intron>
          <exon e_serial="4" e_score="0.991">
            <gDNA_exon_boundary e_start="115739" e_stop="115962" e_length="224"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.970">
            <gDNA_intron_boundary i_start="115963" i_stop="116074" i_length="112"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="116075" e_stop="116161" e_length="87"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113559" stop="113879"/>
              <exon start="114789" stop="114826"/>
              <exon start="115386" stop="115613"/>
              <exon start="115739" stop="115962"/>
              <exon start="116075" stop="116161"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U324611" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTCTTTCACTGATCCTTAATACGCTTACATACTTGTTCGTTTGGTGTAACTGAGTCTTCTTTCCAATTACAATCTCCGCAGACGAATTGTATGATTGTTATTTTGGCAAAATACTTAATTACGCTGTTTCATATTGATCTGAATTGAGTTTATTGTTTTGTCAAAAAGCTAGGTTTTGGATTTTTTTTTCTTTTTCTACTCGATACTCAATTCATTGGAACAAAGAGAATGCAGCAGGAATCTACGTCTGAACAGGAACCGGACGATTCTGAATCGGAACCGGAGTTCGTTGAGCTCGATCCTTCTGGTCGATACGGCCGG : TACAAAGAGGTTCTGGGAAAAGGAGCTTTCAAGAAAGT : TTACCGAGCATTTGATGAATTGGAGGGGATTGAAGTAGCTTGGAACCAGGTTAAATTGGCTGATCTCTTGAGGAATGCTGTGGACTTGGAGCGTCTTTATTCCGAAGTTCATTTGCTTAAAACCCTCAAGCACAAGAATATAATCAAATTCTATAACTCGTGGGTTGACTCAAAGAATGAGAATATCAACATCATTACTGAAATTTTCACTTCTGGGACTTTAAGACA : GTACCGCAAAAAACATAAGAGGGTTGATATCAGAGCACTTAAGAATTGGTCTAGGCAGATATTAGAGGGTCTCTCATATCTACATGGTCATGACCCTCCAATTATTCATCGGGACCTCAAGTGTGATAACATTTTTATCAATGGTAACCAAGGGGAGGTTAAGATTGGTGACTTGGGACTCGCTGCAATTCTTTGCAAGGCTCGTGCTGCTCATAGTGTCATTG : GTACACCAGAATTCATGGCACCAGAACTTTATGAAGAGGAATACGATGAGCTAGTAGATATCTATGCCTTTGGCATGTGCCTGCTGG</gDNA_template>
            <first_frame> F  F  H  *  S  L  I  R  L  H  T  C  S  F  G  V  T  E  S  S  F  Q  L  Q  S  P  Q  T  N  C  M  I  V  I  L  A  K  Y  L  I  T  L  F  H  I  D  L  N  *  V  Y  C  F  V  K  K  L  G  F  G  F  F  F  L  F  L  L  D  T  Q  F  I  G  T  K  R  M  Q  Q  E  S  T  S  E  Q  E  P  D  D  S  E  S  E  P  E  F  V  E  L  D  P  S  G  R  Y  G  R  :  Y  K  E  V  L  G  K  G  A  F  K  K  V :   Y  R  A  F  D  E  L  E  G  I  E  V  A  W  N  Q  V  K  L  A  D  L  L  R  N  A  V  D  L  E  R  L  Y  S  E  V  H  L  L  K  T  L  K  H  K  N  I  I  K  F  Y  N  S  W  V  D  S  K  N  E  N  I  N  I  I  T  E  I  F  T  S  G  T  L  R  Q :   Y  R  K  K  H  K  R  V  D  I  R  A  L  K  N  W  S  R  Q  I  L  E  G  L  S  Y  L  H  G  H  D  P  P  I  I  H  R  D  L  K  C  D  N  I  F  I  N  G  N  Q  G  E  V  K  I  G  D  L  G  L  A  A  I  L  C  K  A  R  A  A  H  S  V  I   : G  T  P  E  F  M  A  P  E  L  Y  E  E  E  Y  D  E  L  V  D  I  Y  A  F  G  M  C  L  L  </first_frame>
            <second_frame>  S  F  T  D  P  *  Y  A  Y  I  L  V  R  L  V  *  L  S  L  L  S  N  Y  N  L  R  R  R  I  V  *  L  L  F  W  Q  N  T  *  L  R  C  F  I  L  I  *  I  E  F  I  V  L  S  K  S  *  V  L  D  F  F  F  F  F  Y  S  I  L  N  S  L  E  Q  R  E  C  S  R  N  L  R  L  N  R  N  R  T  I  L  N  R  N  R  S  S  L  S  S  I  L  L  V  D  T  A  G :   T  K  R  F  W  E  K  E  L  S  R  K   : F  T  E  H  L  M  N  W  R  G  L  K  *  L  G  T  R  L  N  W  L  I  S  *  G  M  L  W  T  W  S  V  F  I  P  K  F  I  C  L  K  P  S  S  T  R  I  *  S  N  S  I  T  R  G  L  T  Q  R  M  R  I  S  T  S  L  L  K  F  S  L  L  G  L  *  D   : S  T  A  K  N  I  R  G  L  I  S  E  H  L  R  I  G  L  G  R  Y  *  R  V  S  H  I  Y  M  V  M  T  L  Q  L  F  I  G  T  S  S  V  I  T  F  L  S  M  V  T  K  G  R  L  R  L  V  T  W  D  S  L  Q  F  F  A  R  L  V  L  L  I  V  S  L  :  V  H  Q  N  S  W  H  Q  N  F  M  K  R  N  T  M  S  *  *  I  S  M  P  L  A  C  A  C  W </second_frame>
            <third_frame>   L  S  L  I  L  N  T  L  T  Y  L  F  V  W  C  N  *  V  F  F  P  I  T  I  S  A  D  E  L  Y  D  C  Y  F  G  K  I  L  N  Y  A  V  S  Y  *  S  E  L  S  L  L  F  C  Q  K  A  R  F  W  I  F  F  S  F  S  T  R  Y  S  I  H  W  N  K  E  N  A  A  G  I  Y  V  *  T  G  T  G  R  F  *  I  G  T  G  V  R  *  A  R  S  F  W  S  I  R  P   : V  Q  R  G  S  G  K  R  S  F  Q  E  S  :  L  P  S  I  *  *  I  G  G  D  *  S  S  L  E  P  G  *  I  G  *  S  L  E  E  C  C  G  L  G  A  S  L  F  R  S  S  F  A  *  N  P  Q  A  Q  E  Y  N  Q  I  L  *  L  V  G  *  L  K  E  *  E  Y  Q  H  H  Y  *  N  F  H  F  W  D  F  K  T  :  V  P  Q  K  T  *  E  G  *  Y  Q  S  T  *  E  L  V  *  A  D  I  R  G  S  L  I  S  T  W  S  *  P  S  N  Y  S  S  G  P  Q  V  *  *  H  F  Y  Q  W  *  P  R  G  G  *  D  W  *  L  G  T  R  C  N  S  L  Q  G  S  C  C  S  *  C  H  W :   Y  T  R  I  H  G  T  R  T  L  *  R  G  I  R  *  A  S  R  Y  L  C  L  W  H  V  P  A   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0127C05.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="113706" stop="113879"/>
                    <exon start="114789" stop="114826"/>
                    <exon start="115386" stop="115613"/>
                    <exon start="115739" stop="115962"/>
                    <exon start="116075" stop="116160"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>750</number_coding_nucleotides>
                  <number_encoded_amino_acids>250</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VYCFVKKLGFGFFFLFLLDTQFIGTKRMQQESTSEQEPDDSESEPEFVELDPSGRYGRYKEVLGKGAFKKVYRAFDELEGIEVAWNQVKLADLLRNAVDLERLYSEVHLLKTLKHKNIIKFYNSWVDSKNENINIITEIFTSGTLRQYRKKHKRVDIRALKNWSRQILEGLSYLHGHDPPIIHRDLKCDNIFINGNQGEVKIGDLGLAAILCKARAAHSVIGTPEFMAPELYEEEYDELVDIYAFGMCLL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 37 chains have been computed
$ 
$ memory statistics:
$ 58128 bytes spliced alignments in total
$ 24 spliced alignments have been stored
$ 2422 bytes was the average size of a spliced alignment
$ 25392 bytes predicted gene locations in total
$ 15 predicted gene locations have been stored
$ 1692 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 44 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-17 08:40:33
-->
