<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-16 14:34:03"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C06SLm0132E21-W4afj/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E703589" ref_strand="+" ref_description="SGN-E703589 [FA21DF11]">
      <seq>tgttgatatgttttgtgtctttgacggcttctcgagctactggtagtgtgattttgattggaaataacaggactttgtcttttgaagatattgaagctaattttgctccctcaccaaagggttcaggaaaatgtgggaggttgtatattgcggagcctttggatgcctgctcaaccttgactaacaagattgaaccaactaataacttcacaaaagaaccatttgttctgataatcaggggtggatgtagctttgaagataaagttagaaaagcacaagctgcaggttttaaagcagccattatctatgatagtggatatggagatataattgcaatggcaggaacctctgctggtgtgaagatactggcagttttcatttcaaaagcttctggagaagcactcacacagtatgctggctcggatacggaagtatggttaatcccaagcttggaaaactcagcttggtcaatcatggctacatctttcatttcactactttctatgtctgctgtacttgcaatgtgtttctttgttcgccgacatcatatacgaagagaacggccaccttctcgtgttcgcgaatttcatgggattagtagccgtttggttaaagctatgccaagtttgatatttacgtcagttgtggaggataattctacatcagtgacatgtgctatatgccttgaagattatactgctggagataagcttagaattcttccatgccggcacaaatttcacactatgtgtgttgatgcttggctgacatcatggagaaccttttgccctgtctgncaaacggatgcaagaactagcactggtgatccaccagcatcagaatctacaccattgctttcttccagtctgcgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0132E21.2" temp_strand="+" temp_description="C06SLm0132E21.2  AC211087.2 htgs_phase:3 submitted_to_sgn_as:C06SLm0132E21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="8971" stop="13666"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9271" g_stop="9375" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="105" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9376" i_stop="9911" i_length="536">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9912" g_stop="10142" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="336" r_length="231" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10143" i_stop="11757" i_length="1615">
            <donor d_prob="0.865" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11758" g_stop="12159" g_length="402"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="735" r_length="399" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12160" i_stop="13228" i_length="1069">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.226" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13229" g_stop="13366" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="736" r_stop="873" r_length="138" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0132E21.2" gen_strand="+" ref_id="SGN-E703589" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>876</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0132E21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E703589" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9271" e_stop="9375"/>
          <exon e_start="9912" e_stop="10142"/>
          <exon e_start="11758" e_stop="12159"/>
          <exon e_start="13229" e_stop="13366"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTGATATGTTTTGTGTCTTTGACGGCTTCTCGAGCTACTGGTAGTGTGATTTTGATTGGAAATAACAGGACTTTGTCTTTTGAAGATATTGAAGCTAATTTTGGTGAGTTGGCTTGCTTCCTCCCAAAACTTCTTTTTGTATTCATTTTTTTGTGTAATGAAATGTGTGATTAGTGCTTTTGATGAATTTTGGGAATTGGGTTTTGCTTAATTTATTTTATTCATAAGCTGTTTGAACTGATCTGCTTTTTTTGGGGTGGGAGGAATTGATCATATTTGTTGTTAATGGCTTTTTCTGGGGGAATAGAAGTTTTCATCTTGGAAATGTCACCTGTCATATTTTGCAAGTTCTTGTTTTTCTGTTGAAATCTTCAAGGAATCTTTACTTGGATCATGAGTCCATGTATGAATGCTGTATTAATAACTTGCATTTACAGCTGAAAATATGTTGTTATTTGTCATGGATTTGGTTCATTGTAATTGATTTATGAGGTTTAGTGATGGTGATGTTTCTGTTTTTGCTCAAAATGTTGAGTGTTGTGATATAACAAAGGTTTTCTATACATTTACTGTTGGCACGACTTTTTTGCGGGCTTTGTTTATGCTAATGTACTAATTCGACCTTGCTTATAATTTCAGCTCCCTCACCAAAGGGTTCAGGAAAATGTGGGAGGTTGTATATTGCGGAGCCTTTGGATGCCTGCTCAACCTTGACTAACAAGATTGAACCAACTAATAACTTCACAAAAGAACCATTTGTTCTGATAATCAGGGGTGGATGTAGCTTTGAAGATAAAGTTAGAAAAGCACAAGCTGCAGGTTTTAAAGCAGCCATTATCTATGATAGTGGATATGGAGATATAATTGCAAGTAATGAACTCTTCCATTGTACAGTTTCTATATTTATTTCACTTGCTCAAAAAAATTAAGTTTTCTTTCTTTCTTTCAATTATTCATTTAGTTCGTTCTAACTTATATTATGTTTGATGGTAGTTAACGTATCAAGTGGTATAACCTGAAATCATATCTTGAGGACGCACTAAAGTGCCCATGGTATCATCATGAACTTGCAAACAGAAACTGTAAAAGCCTAGGAATATACATGCCCAATTGAGATGGGATATGATTACATCACAATTGCATAAGGACACTATCTAATAGATCGTTGTGAGTAGTTGAATCATAATCTTTAGCGTAAACATGGCTGCATGTGCAGCATTCTTGAACTCTCTGATTGCAAGTTTTAGAATAAGGTTGAATATATTTCTGATATTAATCATTTAAGTATCAATAGTTCTACTAACTGATTTTAGATCTGGAAAAATAAGAAAATTAGTCTGCAAAATAGTTTTGACAAAAGCTTTTATTCGTATCTATCTTACTGGCAAAATGACTTCTTGAACTATTGCAAGGGAAATCTCTTGCAGATAGCTGTCACACTCTCTCAGCTGATAATAGTTTTGATTCATTGGGGTAGAAGTAAAATAATTCCTTCAAAATAGATATTTCTGGTACTATTTGTTCCTTTTTATTTTATTAGGTAAAGAAATAAGCGGTCGGATTAACAAGATTTTTTTCTTGTTCTTTTTGTACTGTTAAGGTGATTAGTTAAAATTGACATTGAACTCTTTACTCCTTGCACAAGCCAGCTATCCAACATTCTGCAATTTTGACGCAAACCTGCTGGTTTGCTTTTAATCTCCTAATGCTCTGTTTATCCCATATAAAATGTTGATGAAACTTCTGAACTGTCAATTGATCAACCCAACTATGCTTCCTTCTCTAACTAGTTATTCATGAAGACTGATAGGACGACATATAAAAGGGTTAATTGGATGTTCAATCTGGTGAAGAGAAATTGATCCATGTTTGTCTTCTTTGATTGGCTTGAGCCAGCATGATCCAACAATGGTGCATCTGAAATGTTCATATCAGAAAACTGACAAACTAGCAGAGCAGTTTATTACATAGGAGCGGGGGTTTTACCCTGTGCGCACCCACAGGGTAGCGGCCGTGGGTTTGCCTAGTCATAACAAAGAAAACTAGCAGATTAGTTTTGCCTACCCCCTTCCACTAGGAAAATGAAAGGAATTAGGCACAATTTCCCCCCTAGACTATGACCGAAGTCCTAGAGACACACCTAAACTTAACTAGGGTCCTATTTACCCCCAGCACTCAGTTGTTCCGTGTTTTTGTGCACCTTTTGTGCTGATAACTCATAAAACTTTTGTCAGACTTCAAAAACCATCTTCATCTCTTGCTTTTGAATGATTTATAATTGTTGATTTTTGAGTTAAGTTACCAAATTAAAAAATTGTTGATTTTGAGCAAGTAGCTTCACCTCTTCAAAAATAGTTCCGGGTGCATGTCGGATCCTCCAAAAGTAATGCATTTTTAGAGGATCCGACATGGGTGCGATAGTATCTTGAAGAGTCTGATCATCGTTATTTTGACAAGCAAAGGTTTGATCAGACACATGATACAGTGGCAGGAACCTCTGCTGGTGTGAAGATACTGGCAGTTTTCATTTCAAAAGCTTCTGGAGAAGCACTCACACAGTATGCTGGCTCGGATACGGAAGTATGGTTAATCCCAAGCTTGGAAAACTCAGCTTGGTCAATCATGGCTACATCTTTCATTTCACTACTTTCTATGTCTGCTGTACTTGCAATGTGTTTCTTTGTTCGCCGACATCATATACGAAGAGAACGGCCACGAGCTTCTCGTGTTCGCGAATTTCATGGGATTAGTAGCCGTTTGGTTAAAGCTATGCCAAGTTTGATATTTACGTCAGTTGTGGAGGATAATTCTACATCAGTGACATGTGCTATATGCCTTGAAGATTATACTGCTGGAGATAAGCTTAGAATTCTTCCATGCCGGCACAGTAAGTTATCCTCATTCTCTCTTTGATTTTTGGTACCATGCCAGACTAATCAGTGATCATGGTTGATAAGCACTAATGTATCCCCTTTAAACATGAAACAATTTTAGTGTCACCACTAAGGAAACTTGACTTGTCTCCCACCAAAAGCTTATGGTAGTTTGACCTTACTGAAAATGCACCCAGCACCATCACTTCTTGCCACCCCACCTCTGTGGGTTCCTACTGGTGAGTGTGGTATTCTGTTTGTAAGGCGTTTCCATCAGCCTTTGCAATTCATCCATCTCTCAATCTTGTAAATTCCAGACAATAAATTCCCCCCTTTCGCGTCACCCTAATCTGTTGTACCATCGCCTCTTTCTAGCATGAAACTCTGAATAACTTGGGAGAGGTTGTCCTCCTATACTTCTATGCACCTATGTTGGTCCCAAAAGTTGACTCTACTTCCATTCCCTACTTCATAGGTAACTAAGCCATTGAAATCTAGCTAACCTTTGATAATGCTTTTCTAGACCTCCATTTCCCTTCTACGACTCCATGTTTTCGTGCTATACCTCCCTCCACAATGCGTGCTCTTCAACCCCAAATCTCCATAACTACTTCCCAGTAGTGCCTTGTTCAAAACTCTTAAGTTCTGTTGTTCCAGGGATATGAGGAAGATTCCAACTACTAATTCTTGGTCTCCGTTTACCGAGTCCCCCAAGCCTGTCATCATAGTTGTTTAGCTCCAACTTTGTATCATGATGTAGAGAAGATCATTCATCGCTGTATGCATATTCTTCTACCATCTTGACTTTTGCCCTTTCTAAAGTAGCAGAACAGTTATAAATACAGTTCATACCTGATTTTTGAAATTATTTCATTTTCTGAAGTCTCCTTGGGGGTGAACTATGTGAAAACTAGAATTTATGGTTCCAAGTATCATATTATTGGAATATTTCCCTTGTCCCCAGTTGCTCTAATGCTGTATTTGTTGATACATTTCATAGATGTATGTGCACATTCAGAATTTATTTCTGCTGGAGCACTTGGCCTTTTTCAGTTATTAACTTGTCTTATGGGAACTTCACAGAATTTCACACTATGTGTGTTGATGCTTGGCTGACATCATGGAGAACCTTTTGCCCTGTCTGCAAACGGGATGCAAGAACTAGCACTGGTGATCCACCAGCATCAGAATCTACACCATTGCTTTCTTCCAGTCTGCGAT</genome_strand>
        <mrna_strand>TGTTGATATGTTTTGTGTCTTTGACGGCTTCTCGAGCTACTGGTAGTGTGATTTTGATTGGAAATAACAGGACTTTGTCTTTTGAAGATATTGAAGCTAATTTTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCCCTCACCAAAGGGTTCAGGAAAATGTGGGAGGTTGTATATTGCGGAGCCTTTGGATGCCTGCTCAACCTTGACTAACAAGATTGAACCAACTAATAACTTCACAAAAGAACCATTTGTTCTGATAATCAGGGGTGGATGTAGCTTTGAAGATAAAGTTAGAAAAGCACAAGCTGCAGGTTTTAAAGCAGCCATTATCTATGATAGTGGATATGGAGATATAATTGCAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCAGGAACCTCTGCTGGTGTGAAGATACTGGCAGTTTTCATTTCAAAAGCTTCTGGAGAAGCACTCACACAGTATGCTGGCTCGGATACGGAAGTATGGTTAATCCCAAGCTTGGAAAACTCAGCTTGGTCAATCATGGCTACATCTTTCATTTCACTACTTTCTATGTCTGCTGTACTTGCAATGTGTTTCTTTGTTCGCCGACATCATATACGAAGAGAACGGCCAC---CTTCTCGTGTTCGCGAATTTCATGGGATTAGTAGCCGTTTGGTTAAAGCTATGCCAAGTTTGATATTTACGTCAGTTGTGGAGGATAATTCTACATCAGTGACATGTGCTATATGCCTTGAAGATTATACTGCTGGAGATAAGCTTAGAATTCTTCCATGCCGGCACA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTTCACACTATGTGTGTTGATGCTTGGCTGACATCATGGAGAACCTTTTGCCCTGTCTGNCAAACGGATGCAAGAACTAGCACTGGTGATCCACCAGCATCAGAATCTACACCATTGCTTTCTTCCAGTCTGCGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E688975" ref_strand="+" ref_description="SGN-E688975 [t3_tus_55_J07]">
      <seq>tgatagtggatatggagatataattgcaatggcaggaacctctgctggtgtgaagatactggcagttttcatttcaaaagcttctggagaagcactcacacagtatgctggctcggatacggaagtatggttaatcccaagcttggaaaactcagcttggtcaatcatggctacatctttcatttcactactttctatgtctgctgtacttgcaatgtgtttctttgttcgccgacatcatatacgaagagaacggccacgagcttctcgtgttcgcgaatttcatgggattagtagccgtttggttaaagctatgccaagtttgatatttacgtcagttgtggaggataattctacatcagtgacatgtgctatatgccttgaagattatactgctggagataagcttagaattcttccatgccggcacaggaactcaggttgggttattctgacctcaaattcacgtgaagacnatagagctgattcgtgttggtttgcttgacatctgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0132E21.2" temp_strand="+" temp_description="C06SLm0132E21.2  AC211087.2 htgs_phase:3 submitted_to_sgn_as:C06SLm0132E21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="9814" stop="14225"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10114" g_stop="10142" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="29" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10143" i_stop="11757" i_length="1615">
            <donor d_prob="0.865" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11758" g_stop="12159" g_length="402"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="431" r_length="402" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12160" i_stop="13843" i_length="1684">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13844" g_stop="13925" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="432" r_stop="513" r_length="82" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0132E21.2" gen_strand="+" ref_id="SGN-E688975" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>513</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0132E21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E688975" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10114" e_stop="10142"/>
          <exon e_start="11758" e_stop="12159"/>
          <exon e_start="13844" e_stop="13925"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATAGTGGATATGGAGATATAATTGCAAGTAATGAACTCTTCCATTGTACAGTTTCTATATTTATTTCACTTGCTCAAAAAAATTAAGTTTTCTTTCTTTCTTTCAATTATTCATTTAGTTCGTTCTAACTTATATTATGTTTGATGGTAGTTAACGTATCAAGTGGTATAACCTGAAATCATATCTTGAGGACGCACTAAAGTGCCCATGGTATCATCATGAACTTGCAAACAGAAACTGTAAAAGCCTAGGAATATACATGCCCAATTGAGATGGGATATGATTACATCACAATTGCATAAGGACACTATCTAATAGATCGTTGTGAGTAGTTGAATCATAATCTTTAGCGTAAACATGGCTGCATGTGCAGCATTCTTGAACTCTCTGATTGCAAGTTTTAGAATAAGGTTGAATATATTTCTGATATTAATCATTTAAGTATCAATAGTTCTACTAACTGATTTTAGATCTGGAAAAATAAGAAAATTAGTCTGCAAAATAGTTTTGACAAAAGCTTTTATTCGTATCTATCTTACTGGCAAAATGACTTCTTGAACTATTGCAAGGGAAATCTCTTGCAGATAGCTGTCACACTCTCTCAGCTGATAATAGTTTTGATTCATTGGGGTAGAAGTAAAATAATTCCTTCAAAATAGATATTTCTGGTACTATTTGTTCCTTTTTATTTTATTAGGTAAAGAAATAAGCGGTCGGATTAACAAGATTTTTTTCTTGTTCTTTTTGTACTGTTAAGGTGATTAGTTAAAATTGACATTGAACTCTTTACTCCTTGCACAAGCCAGCTATCCAACATTCTGCAATTTTGACGCAAACCTGCTGGTTTGCTTTTAATCTCCTAATGCTCTGTTTATCCCATATAAAATGTTGATGAAACTTCTGAACTGTCAATTGATCAACCCAACTATGCTTCCTTCTCTAACTAGTTATTCATGAAGACTGATAGGACGACATATAAAAGGGTTAATTGGATGTTCAATCTGGTGAAGAGAAATTGATCCATGTTTGTCTTCTTTGATTGGCTTGAGCCAGCATGATCCAACAATGGTGCATCTGAAATGTTCATATCAGAAAACTGACAAACTAGCAGAGCAGTTTATTACATAGGAGCGGGGGTTTTACCCTGTGCGCACCCACAGGGTAGCGGCCGTGGGTTTGCCTAGTCATAACAAAGAAAACTAGCAGATTAGTTTTGCCTACCCCCTTCCACTAGGAAAATGAAAGGAATTAGGCACAATTTCCCCCCTAGACTATGACCGAAGTCCTAGAGACACACCTAAACTTAACTAGGGTCCTATTTACCCCCAGCACTCAGTTGTTCCGTGTTTTTGTGCACCTTTTGTGCTGATAACTCATAAAACTTTTGTCAGACTTCAAAAACCATCTTCATCTCTTGCTTTTGAATGATTTATAATTGTTGATTTTTGAGTTAAGTTACCAAATTAAAAAATTGTTGATTTTGAGCAAGTAGCTTCACCTCTTCAAAAATAGTTCCGGGTGCATGTCGGATCCTCCAAAAGTAATGCATTTTTAGAGGATCCGACATGGGTGCGATAGTATCTTGAAGAGTCTGATCATCGTTATTTTGACAAGCAAAGGTTTGATCAGACACATGATACAGTGGCAGGAACCTCTGCTGGTGTGAAGATACTGGCAGTTTTCATTTCAAAAGCTTCTGGAGAAGCACTCACACAGTATGCTGGCTCGGATACGGAAGTATGGTTAATCCCAAGCTTGGAAAACTCAGCTTGGTCAATCATGGCTACATCTTTCATTTCACTACTTTCTATGTCTGCTGTACTTGCAATGTGTTTCTTTGTTCGCCGACATCATATACGAAGAGAACGGCCACGAGCTTCTCGTGTTCGCGAATTTCATGGGATTAGTAGCCGTTTGGTTAAAGCTATGCCAAGTTTGATATTTACGTCAGTTGTGGAGGATAATTCTACATCAGTGACATGTGCTATATGCCTTGAAGATTATACTGCTGGAGATAAGCTTAGAATTCTTCCATGCCGGCACAGTAAGTTATCCTCATTCTCTCTTTGATTTTTGGTACCATGCCAGACTAATCAGTGATCATGGTTGATAAGCACTAATGTATCCCCTTTAAACATGAAACAATTTTAGTGTCACCACTAAGGAAACTTGACTTGTCTCCCACCAAAAGCTTATGGTAGTTTGACCTTACTGAAAATGCACCCAGCACCATCACTTCTTGCCACCCCACCTCTGTGGGTTCCTACTGGTGAGTGTGGTATTCTGTTTGTAAGGCGTTTCCATCAGCCTTTGCAATTCATCCATCTCTCAATCTTGTAAATTCCAGACAATAAATTCCCCCCTTTCGCGTCACCCTAATCTGTTGTACCATCGCCTCTTTCTAGCATGAAACTCTGAATAACTTGGGAGAGGTTGTCCTCCTATACTTCTATGCACCTATGTTGGTCCCAAAAGTTGACTCTACTTCCATTCCCTACTTCATAGGTAACTAAGCCATTGAAATCTAGCTAACCTTTGATAATGCTTTTCTAGACCTCCATTTCCCTTCTACGACTCCATGTTTTCGTGCTATACCTCCCTCCACAATGCGTGCTCTTCAACCCCAAATCTCCATAACTACTTCCCAGTAGTGCCTTGTTCAAAACTCTTAAGTTCTGTTGTTCCAGGGATATGAGGAAGATTCCAACTACTAATTCTTGGTCTCCGTTTACCGAGTCCCCCAAGCCTGTCATCATAGTTGTTTAGCTCCAACTTTGTATCATGATGTAGAGAAGATCATTCATCGCTGTATGCATATTCTTCTACCATCTTGACTTTTGCCCTTTCTAAAGTAGCAGAACAGTTATAAATACAGTTCATACCTGATTTTTGAAATTATTTCATTTTCTGAAGTCTCCTTGGGGGTGAACTATGTGAAAACTAGAATTTATGGTTCCAAGTATCATATTATTGGAATATTTCCCTTGTCCCCAGTTGCTCTAATGCTGTATTTGTTGATACATTTCATAGATGTATGTGCACATTCAGAATTTATTTCTGCTGGAGCACTTGGCCTTTTTCAGTTATTAACTTGTCTTATGGGAACTTCACAGAATTTCACACTATGTGTGTTGATGCTTGGCTGACATCATGGAGAACCTTTTGCCCTGTCTGCAAACGGGATGCAAGAACTAGCACTGGTGATCCACCAGCATCAGAATCTACACCATTGCTTTCTTCCAGTCTGCGATCTGTATCTTCAGTGTCATCTCTGAGGTCATCATTAGCATCATCAGAAGTGATACATATAGGCACAGGAGCATCTCGATCACCTTCAGTTTCTCGTCCTCAATCTATCTCTAGCTCTCGTAACCAGCATTCACTTTGGTCTTACCAGTCACCACATCTTGCTATAAGCCGGAGTTCACTGGACCTTCAAAATGCATCTTCTCAAAGATCTCGTGCAGCTTACTTAATTTCATCCAACTCATTGGGTTATCCTTGTTTATCACCTCTTAATTCAAGATATGGGTCTGCATACATTCCTAGTCCTAGCAATCCCTCGTCGAGCTATATGGGATCAACAAGTCGGCAGCCTAACCCACTGCATCACAGTGAATCAATTACAAGCTTTTCACCATTTGCTTCAGCTAACTCTCTTCCTGGATGTGAGTCGTGATTTAATTGATCATGGCAAACATTAATCAAATTGTTGAAGTCCCTTGCAGGGAACTCAGGTTGGGTTATTCTGACCTCAAATTCACGTGAAGACAATAGAGCTGATTCGTGTTGGTTGCTTTGACATCTGGA</genome_strand>
        <mrna_strand>TGATAGTGGATATGGAGATATAATTGCAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCAGGAACCTCTGCTGGTGTGAAGATACTGGCAGTTTTCATTTCAAAAGCTTCTGGAGAAGCACTCACACAGTATGCTGGCTCGGATACGGAAGTATGGTTAATCCCAAGCTTGGAAAACTCAGCTTGGTCAATCATGGCTACATCTTTCATTTCACTACTTTCTATGTCTGCTGTACTTGCAATGTGTTTCTTTGTTCGCCGACATCATATACGAAGAGAACGGCCACGAGCTTCTCGTGTTCGCGAATTTCATGGGATTAGTAGCCGTTTGGTTAAAGCTATGCCAAGTTTGATATTTACGTCAGTTGTGGAGGATAATTCTACATCAGTGACATGTGCTATATGCCTTGAAGATTATACTGCTGGAGATAAGCTTAGAATTCTTCCATGCCGGCACA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAACTCAGGTTGGGTTATTCTGACCTCAAATTCACGTGAAGACNATAGAGCTGATTCGTGTTGGTTTGCTTGACATCTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E551488" ref_strand="+" ref_description="SGN-E551488 [TUS-55-J7]">
      <seq>tgatagtggatatggagatataattgcaatggcaggaacctctgctggtgtgaagatactggcagttttcatttcaaaagcttctggagaagcactcacacagtatgctggctcggatacggaagtatggttaatcccaagcttggaaaactcagcttggtcaatcatggctacatctttcatttcactactttctatgtctgctgtacttgcaatgtgtttctttgttcgccgacatcatatacaaagagaacggccacgagcttctcgtgttcgcgaatttcatgggattagtagccgtttggttaaagctatgccaagtttgatatttacgtcagttgtggaggataattctacatcagtgacatgtgctatatgccttgaagattatactgctggagataagcttagaattcttccatgccggcacaggaactcaggttgggttattctgacctcaaattcacgtgaagacnatagagctgattcgtgttggttgctttgacatctgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0132E21.2" temp_strand="+" temp_description="C06SLm0132E21.2  AC211087.2 htgs_phase:3 submitted_to_sgn_as:C06SLm0132E21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="9814" stop="14225"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10114" g_stop="10142" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="29" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10143" i_stop="11757" i_length="1615">
            <donor d_prob="0.865" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11758" g_stop="12159" g_length="402"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="431" r_length="402" r_score="0.998"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12160" i_stop="13843" i_length="1684">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13844" g_stop="13925" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="432" r_stop="513" r_length="82" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0132E21.2" gen_strand="+" ref_id="SGN-E551488" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>513</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0132E21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E551488" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10114" e_stop="10142"/>
          <exon e_start="11758" e_stop="12159"/>
          <exon e_start="13844" e_stop="13925"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATAGTGGATATGGAGATATAATTGCAAGTAATGAACTCTTCCATTGTACAGTTTCTATATTTATTTCACTTGCTCAAAAAAATTAAGTTTTCTTTCTTTCTTTCAATTATTCATTTAGTTCGTTCTAACTTATATTATGTTTGATGGTAGTTAACGTATCAAGTGGTATAACCTGAAATCATATCTTGAGGACGCACTAAAGTGCCCATGGTATCATCATGAACTTGCAAACAGAAACTGTAAAAGCCTAGGAATATACATGCCCAATTGAGATGGGATATGATTACATCACAATTGCATAAGGACACTATCTAATAGATCGTTGTGAGTAGTTGAATCATAATCTTTAGCGTAAACATGGCTGCATGTGCAGCATTCTTGAACTCTCTGATTGCAAGTTTTAGAATAAGGTTGAATATATTTCTGATATTAATCATTTAAGTATCAATAGTTCTACTAACTGATTTTAGATCTGGAAAAATAAGAAAATTAGTCTGCAAAATAGTTTTGACAAAAGCTTTTATTCGTATCTATCTTACTGGCAAAATGACTTCTTGAACTATTGCAAGGGAAATCTCTTGCAGATAGCTGTCACACTCTCTCAGCTGATAATAGTTTTGATTCATTGGGGTAGAAGTAAAATAATTCCTTCAAAATAGATATTTCTGGTACTATTTGTTCCTTTTTATTTTATTAGGTAAAGAAATAAGCGGTCGGATTAACAAGATTTTTTTCTTGTTCTTTTTGTACTGTTAAGGTGATTAGTTAAAATTGACATTGAACTCTTTACTCCTTGCACAAGCCAGCTATCCAACATTCTGCAATTTTGACGCAAACCTGCTGGTTTGCTTTTAATCTCCTAATGCTCTGTTTATCCCATATAAAATGTTGATGAAACTTCTGAACTGTCAATTGATCAACCCAACTATGCTTCCTTCTCTAACTAGTTATTCATGAAGACTGATAGGACGACATATAAAAGGGTTAATTGGATGTTCAATCTGGTGAAGAGAAATTGATCCATGTTTGTCTTCTTTGATTGGCTTGAGCCAGCATGATCCAACAATGGTGCATCTGAAATGTTCATATCAGAAAACTGACAAACTAGCAGAGCAGTTTATTACATAGGAGCGGGGGTTTTACCCTGTGCGCACCCACAGGGTAGCGGCCGTGGGTTTGCCTAGTCATAACAAAGAAAACTAGCAGATTAGTTTTGCCTACCCCCTTCCACTAGGAAAATGAAAGGAATTAGGCACAATTTCCCCCCTAGACTATGACCGAAGTCCTAGAGACACACCTAAACTTAACTAGGGTCCTATTTACCCCCAGCACTCAGTTGTTCCGTGTTTTTGTGCACCTTTTGTGCTGATAACTCATAAAACTTTTGTCAGACTTCAAAAACCATCTTCATCTCTTGCTTTTGAATGATTTATAATTGTTGATTTTTGAGTTAAGTTACCAAATTAAAAAATTGTTGATTTTGAGCAAGTAGCTTCACCTCTTCAAAAATAGTTCCGGGTGCATGTCGGATCCTCCAAAAGTAATGCATTTTTAGAGGATCCGACATGGGTGCGATAGTATCTTGAAGAGTCTGATCATCGTTATTTTGACAAGCAAAGGTTTGATCAGACACATGATACAGTGGCAGGAACCTCTGCTGGTGTGAAGATACTGGCAGTTTTCATTTCAAAAGCTTCTGGAGAAGCACTCACACAGTATGCTGGCTCGGATACGGAAGTATGGTTAATCCCAAGCTTGGAAAACTCAGCTTGGTCAATCATGGCTACATCTTTCATTTCACTACTTTCTATGTCTGCTGTACTTGCAATGTGTTTCTTTGTTCGCCGACATCATATACGAAGAGAACGGCCACGAGCTTCTCGTGTTCGCGAATTTCATGGGATTAGTAGCCGTTTGGTTAAAGCTATGCCAAGTTTGATATTTACGTCAGTTGTGGAGGATAATTCTACATCAGTGACATGTGCTATATGCCTTGAAGATTATACTGCTGGAGATAAGCTTAGAATTCTTCCATGCCGGCACAGTAAGTTATCCTCATTCTCTCTTTGATTTTTGGTACCATGCCAGACTAATCAGTGATCATGGTTGATAAGCACTAATGTATCCCCTTTAAACATGAAACAATTTTAGTGTCACCACTAAGGAAACTTGACTTGTCTCCCACCAAAAGCTTATGGTAGTTTGACCTTACTGAAAATGCACCCAGCACCATCACTTCTTGCCACCCCACCTCTGTGGGTTCCTACTGGTGAGTGTGGTATTCTGTTTGTAAGGCGTTTCCATCAGCCTTTGCAATTCATCCATCTCTCAATCTTGTAAATTCCAGACAATAAATTCCCCCCTTTCGCGTCACCCTAATCTGTTGTACCATCGCCTCTTTCTAGCATGAAACTCTGAATAACTTGGGAGAGGTTGTCCTCCTATACTTCTATGCACCTATGTTGGTCCCAAAAGTTGACTCTACTTCCATTCCCTACTTCATAGGTAACTAAGCCATTGAAATCTAGCTAACCTTTGATAATGCTTTTCTAGACCTCCATTTCCCTTCTACGACTCCATGTTTTCGTGCTATACCTCCCTCCACAATGCGTGCTCTTCAACCCCAAATCTCCATAACTACTTCCCAGTAGTGCCTTGTTCAAAACTCTTAAGTTCTGTTGTTCCAGGGATATGAGGAAGATTCCAACTACTAATTCTTGGTCTCCGTTTACCGAGTCCCCCAAGCCTGTCATCATAGTTGTTTAGCTCCAACTTTGTATCATGATGTAGAGAAGATCATTCATCGCTGTATGCATATTCTTCTACCATCTTGACTTTTGCCCTTTCTAAAGTAGCAGAACAGTTATAAATACAGTTCATACCTGATTTTTGAAATTATTTCATTTTCTGAAGTCTCCTTGGGGGTGAACTATGTGAAAACTAGAATTTATGGTTCCAAGTATCATATTATTGGAATATTTCCCTTGTCCCCAGTTGCTCTAATGCTGTATTTGTTGATACATTTCATAGATGTATGTGCACATTCAGAATTTATTTCTGCTGGAGCACTTGGCCTTTTTCAGTTATTAACTTGTCTTATGGGAACTTCACAGAATTTCACACTATGTGTGTTGATGCTTGGCTGACATCATGGAGAACCTTTTGCCCTGTCTGCAAACGGGATGCAAGAACTAGCACTGGTGATCCACCAGCATCAGAATCTACACCATTGCTTTCTTCCAGTCTGCGATCTGTATCTTCAGTGTCATCTCTGAGGTCATCATTAGCATCATCAGAAGTGATACATATAGGCACAGGAGCATCTCGATCACCTTCAGTTTCTCGTCCTCAATCTATCTCTAGCTCTCGTAACCAGCATTCACTTTGGTCTTACCAGTCACCACATCTTGCTATAAGCCGGAGTTCACTGGACCTTCAAAATGCATCTTCTCAAAGATCTCGTGCAGCTTACTTAATTTCATCCAACTCATTGGGTTATCCTTGTTTATCACCTCTTAATTCAAGATATGGGTCTGCATACATTCCTAGTCCTAGCAATCCCTCGTCGAGCTATATGGGATCAACAAGTCGGCAGCCTAACCCACTGCATCACAGTGAATCAATTACAAGCTTTTCACCATTTGCTTCAGCTAACTCTCTTCCTGGATGTGAGTCGTGATTTAATTGATCATGGCAAACATTAATCAAATTGTTGAAGTCCCTTGCAGGGAACTCAGGTTGGGTTATTCTGACCTCAAATTCACGTGAAGACAATAGAGCTGATTCGTGTTGGTTGCTTTGACATCTGGA</genome_strand>
        <mrna_strand>TGATAGTGGATATGGAGATATAATTGCAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCAGGAACCTCTGCTGGTGTGAAGATACTGGCAGTTTTCATTTCAAAAGCTTCTGGAGAAGCACTCACACAGTATGCTGGCTCGGATACGGAAGTATGGTTAATCCCAAGCTTGGAAAACTCAGCTTGGTCAATCATGGCTACATCTTTCATTTCACTACTTTCTATGTCTGCTGTACTTGCAATGTGTTTCTTTGTTCGCCGACATCATATACAAAGAGAACGGCCACGAGCTTCTCGTGTTCGCGAATTTCATGGGATTAGTAGCCGTTTGGTTAAAGCTATGCCAAGTTTGATATTTACGTCAGTTGTGGAGGATAATTCTACATCAGTGACATGTGCTATATGCCTTGAAGATTATACTGCTGGAGATAAGCTTAGAATTCTTCCATGCCGGCACA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAACTCAGGTTGGGTTATTCTGACCTCAAATTCACGTGAAGACNATAGAGCTGATTCGTGTTGGTTGCTTTGACATCTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E263235" ref_strand="+" ref_description="SGN-E263235 [cLEG-62-F22]">
      <seq>gatagtggatatggagatataattgcaatggcaggaacctctgctggtgtgaagatactggcagttttcatttcaaaagcttctggagaagcactcacacagtatgctggctcggatacggaagtatggttaatcccaagcttggaaaactcagcttggtcaatcatggctacatctttcatttcactactttctatgtctgctgtacttgcaatgtgtttctttgttcgccgacatcatatacgaagagaacggccacgagcttctcgtgttcgcgaatttcatgggattagtagccgtttggttaaagctatgccaagtttgatatttacgtcagttgtggaggataattctacatcagtgacatgtgctatatgccttgaagattatactgctggagataagcttagaattcttccatgccggcacaggaactcaggttgggttattctgacctcaaattcacgtgaagacaatagagctgattcgtgttggttgctttgacatctggacggaggaatacaacagctagcttcattgctcaacacttctgggatattggtttagtagttgataggtttgataattttgagttttttacagagtgtacattcttaaagatgggtgtattactgtacgcattgcgccttcttttgtttattgcttttttttttcttcttaccctcgatttctctataatagtgatgtttttagccatgtccacctgacagatggttgaggcctgtagtttgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0132E21.2" temp_strand="+" temp_description="C06SLm0132E21.2  AC211087.2 htgs_phase:3 submitted_to_sgn_as:C06SLm0132E21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="9815" stop="14467"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10115" g_stop="10142" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="28" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10143" i_stop="11757" i_length="1615">
            <donor d_prob="0.865" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11758" g_stop="12159" g_length="402"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="430" r_length="402" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12160" i_stop="13843" i_length="1684">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13844" g_stop="14167" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="431" r_stop="754" r_length="324" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0132E21.2" gen_strand="+" ref_id="SGN-E263235" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>754</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0132E21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E263235" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10115" e_stop="10142"/>
          <exon e_start="11758" e_stop="12159"/>
          <exon e_start="13844" e_stop="14167"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATAGTGGATATGGAGATATAATTGCAAGTAATGAACTCTTCCATTGTACAGTTTCTATATTTATTTCACTTGCTCAAAAAAATTAAGTTTTCTTTCTTTCTTTCAATTATTCATTTAGTTCGTTCTAACTTATATTATGTTTGATGGTAGTTAACGTATCAAGTGGTATAACCTGAAATCATATCTTGAGGACGCACTAAAGTGCCCATGGTATCATCATGAACTTGCAAACAGAAACTGTAAAAGCCTAGGAATATACATGCCCAATTGAGATGGGATATGATTACATCACAATTGCATAAGGACACTATCTAATAGATCGTTGTGAGTAGTTGAATCATAATCTTTAGCGTAAACATGGCTGCATGTGCAGCATTCTTGAACTCTCTGATTGCAAGTTTTAGAATAAGGTTGAATATATTTCTGATATTAATCATTTAAGTATCAATAGTTCTACTAACTGATTTTAGATCTGGAAAAATAAGAAAATTAGTCTGCAAAATAGTTTTGACAAAAGCTTTTATTCGTATCTATCTTACTGGCAAAATGACTTCTTGAACTATTGCAAGGGAAATCTCTTGCAGATAGCTGTCACACTCTCTCAGCTGATAATAGTTTTGATTCATTGGGGTAGAAGTAAAATAATTCCTTCAAAATAGATATTTCTGGTACTATTTGTTCCTTTTTATTTTATTAGGTAAAGAAATAAGCGGTCGGATTAACAAGATTTTTTTCTTGTTCTTTTTGTACTGTTAAGGTGATTAGTTAAAATTGACATTGAACTCTTTACTCCTTGCACAAGCCAGCTATCCAACATTCTGCAATTTTGACGCAAACCTGCTGGTTTGCTTTTAATCTCCTAATGCTCTGTTTATCCCATATAAAATGTTGATGAAACTTCTGAACTGTCAATTGATCAACCCAACTATGCTTCCTTCTCTAACTAGTTATTCATGAAGACTGATAGGACGACATATAAAAGGGTTAATTGGATGTTCAATCTGGTGAAGAGAAATTGATCCATGTTTGTCTTCTTTGATTGGCTTGAGCCAGCATGATCCAACAATGGTGCATCTGAAATGTTCATATCAGAAAACTGACAAACTAGCAGAGCAGTTTATTACATAGGAGCGGGGGTTTTACCCTGTGCGCACCCACAGGGTAGCGGCCGTGGGTTTGCCTAGTCATAACAAAGAAAACTAGCAGATTAGTTTTGCCTACCCCCTTCCACTAGGAAAATGAAAGGAATTAGGCACAATTTCCCCCCTAGACTATGACCGAAGTCCTAGAGACACACCTAAACTTAACTAGGGTCCTATTTACCCCCAGCACTCAGTTGTTCCGTGTTTTTGTGCACCTTTTGTGCTGATAACTCATAAAACTTTTGTCAGACTTCAAAAACCATCTTCATCTCTTGCTTTTGAATGATTTATAATTGTTGATTTTTGAGTTAAGTTACCAAATTAAAAAATTGTTGATTTTGAGCAAGTAGCTTCACCTCTTCAAAAATAGTTCCGGGTGCATGTCGGATCCTCCAAAAGTAATGCATTTTTAGAGGATCCGACATGGGTGCGATAGTATCTTGAAGAGTCTGATCATCGTTATTTTGACAAGCAAAGGTTTGATCAGACACATGATACAGTGGCAGGAACCTCTGCTGGTGTGAAGATACTGGCAGTTTTCATTTCAAAAGCTTCTGGAGAAGCACTCACACAGTATGCTGGCTCGGATACGGAAGTATGGTTAATCCCAAGCTTGGAAAACTCAGCTTGGTCAATCATGGCTACATCTTTCATTTCACTACTTTCTATGTCTGCTGTACTTGCAATGTGTTTCTTTGTTCGCCGACATCATATACGAAGAGAACGGCCACGAGCTTCTCGTGTTCGCGAATTTCATGGGATTAGTAGCCGTTTGGTTAAAGCTATGCCAAGTTTGATATTTACGTCAGTTGTGGAGGATAATTCTACATCAGTGACATGTGCTATATGCCTTGAAGATTATACTGCTGGAGATAAGCTTAGAATTCTTCCATGCCGGCACAGTAAGTTATCCTCATTCTCTCTTTGATTTTTGGTACCATGCCAGACTAATCAGTGATCATGGTTGATAAGCACTAATGTATCCCCTTTAAACATGAAACAATTTTAGTGTCACCACTAAGGAAACTTGACTTGTCTCCCACCAAAAGCTTATGGTAGTTTGACCTTACTGAAAATGCACCCAGCACCATCACTTCTTGCCACCCCACCTCTGTGGGTTCCTACTGGTGAGTGTGGTATTCTGTTTGTAAGGCGTTTCCATCAGCCTTTGCAATTCATCCATCTCTCAATCTTGTAAATTCCAGACAATAAATTCCCCCCTTTCGCGTCACCCTAATCTGTTGTACCATCGCCTCTTTCTAGCATGAAACTCTGAATAACTTGGGAGAGGTTGTCCTCCTATACTTCTATGCACCTATGTTGGTCCCAAAAGTTGACTCTACTTCCATTCCCTACTTCATAGGTAACTAAGCCATTGAAATCTAGCTAACCTTTGATAATGCTTTTCTAGACCTCCATTTCCCTTCTACGACTCCATGTTTTCGTGCTATACCTCCCTCCACAATGCGTGCTCTTCAACCCCAAATCTCCATAACTACTTCCCAGTAGTGCCTTGTTCAAAACTCTTAAGTTCTGTTGTTCCAGGGATATGAGGAAGATTCCAACTACTAATTCTTGGTCTCCGTTTACCGAGTCCCCCAAGCCTGTCATCATAGTTGTTTAGCTCCAACTTTGTATCATGATGTAGAGAAGATCATTCATCGCTGTATGCATATTCTTCTACCATCTTGACTTTTGCCCTTTCTAAAGTAGCAGAACAGTTATAAATACAGTTCATACCTGATTTTTGAAATTATTTCATTTTCTGAAGTCTCCTTGGGGGTGAACTATGTGAAAACTAGAATTTATGGTTCCAAGTATCATATTATTGGAATATTTCCCTTGTCCCCAGTTGCTCTAATGCTGTATTTGTTGATACATTTCATAGATGTATGTGCACATTCAGAATTTATTTCTGCTGGAGCACTTGGCCTTTTTCAGTTATTAACTTGTCTTATGGGAACTTCACAGAATTTCACACTATGTGTGTTGATGCTTGGCTGACATCATGGAGAACCTTTTGCCCTGTCTGCAAACGGGATGCAAGAACTAGCACTGGTGATCCACCAGCATCAGAATCTACACCATTGCTTTCTTCCAGTCTGCGATCTGTATCTTCAGTGTCATCTCTGAGGTCATCATTAGCATCATCAGAAGTGATACATATAGGCACAGGAGCATCTCGATCACCTTCAGTTTCTCGTCCTCAATCTATCTCTAGCTCTCGTAACCAGCATTCACTTTGGTCTTACCAGTCACCACATCTTGCTATAAGCCGGAGTTCACTGGACCTTCAAAATGCATCTTCTCAAAGATCTCGTGCAGCTTACTTAATTTCATCCAACTCATTGGGTTATCCTTGTTTATCACCTCTTAATTCAAGATATGGGTCTGCATACATTCCTAGTCCTAGCAATCCCTCGTCGAGCTATATGGGATCAACAAGTCGGCAGCCTAACCCACTGCATCACAGTGAATCAATTACAAGCTTTTCACCATTTGCTTCAGCTAACTCTCTTCCTGGATGTGAGTCGTGATTTAATTGATCATGGCAAACATTAATCAAATTGTTGAAGTCCCTTGCAGGGAACTCAGGTTGGGTTATTCTGACCTCAAATTCACGTGAAGACAATAGAGCTGATTCGTGTTGGTTGCTTTGACATCTGGACGGAGGAATACAACAGCTAGCTTCATTGCTCAACACTTCTGGGATATTGGTTTAGTAGTTGATAGGTTTGATAATTTTGAGTTTTTTACAGAGTGTACATTCTTAAAGATGGGTGTATTACTGTACGCATTGCGCCTTCTTTTGTTTATTGCTTTTTTTTTTCTTCTTACCCTCGATTTCTCTATAATAGTGATGTTTTTAGCCATGTCCACCTGACAGATGGTTGAGGCCTGTAGTTTGCA</genome_strand>
        <mrna_strand>GATAGTGGATATGGAGATATAATTGCAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCAGGAACCTCTGCTGGTGTGAAGATACTGGCAGTTTTCATTTCAAAAGCTTCTGGAGAAGCACTCACACAGTATGCTGGCTCGGATACGGAAGTATGGTTAATCCCAAGCTTGGAAAACTCAGCTTGGTCAATCATGGCTACATCTTTCATTTCACTACTTTCTATGTCTGCTGTACTTGCAATGTGTTTCTTTGTTCGCCGACATCATATACGAAGAGAACGGCCACGAGCTTCTCGTGTTCGCGAATTTCATGGGATTAGTAGCCGTTTGGTTAAAGCTATGCCAAGTTTGATATTTACGTCAGTTGTGGAGGATAATTCTACATCAGTGACATGTGCTATATGCCTTGAAGATTATACTGCTGGAGATAAGCTTAGAATTCTTCCATGCCGGCACA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAACTCAGGTTGGGTTATTCTGACCTCAAATTCACGTGAAGACAATAGAGCTGATTCGTGTTGGTTGCTTTGACATCTGGACGGAGGAATACAACAGCTAGCTTCATTGCTCAACACTTCTGGGATATTGGTTTAGTAGTTGATAGGTTTGATAATTTTGAGTTTTTTACAGAGTGTACATTCTTAAAGATGGGTGTATTACTGTACGCATTGCGCCTTCTTTTGTTTATTGCTTTTTTTTTTCTTCTTACCCTCGATTTCTCTATAATAGTGATGTTTTTAGCCATGTCCACCTGACAGATGGTTGAGGCCTGTAGTTTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E254864" ref_strand="+" ref_description="SGN-E254864 [cLEG-33-D22]">
      <seq>gatagtggatatggagatataattgcaatggcaggaacctctgctggtgtgaagagactggcagttttcatttcaaaagcttctggagaagcactcacacagtatgctggctcggatacggaagtatggttaatcccaagcttggaaaactcagcttggtcaatcatggctacatctttcatttcactactttctatgtctgctgtacttgcaatgtgtttctttgttcgccgacatcatatacgaagagaacggccacgagcttctcgtgttcgcgaatttcatgggattagtagccgtttggttaaagctatgccaagtttgatatttacgtcagttgtggaggataattctacatcagtgacatgtgctatatgcgcttgaagatttaacactgctggagataagcttagaattcttccatgccggcacaggaactcaggttgggttattctgacctcaaattcacgtgaagacaatagagctgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0132E21.2" temp_strand="+" temp_description="C06SLm0132E21.2  AC211087.2 htgs_phase:3 submitted_to_sgn_as:C06SLm0132E21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="9815" stop="14199"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10115" g_stop="10142" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="28" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10143" i_stop="11757" i_length="1615">
            <donor d_prob="0.865" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11758" g_stop="12159" g_length="402"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="433" r_length="405" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12160" i_stop="13843" i_length="1684">
            <donor d_prob="0.999" d_score="0.90"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13844" g_stop="13899" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="489" r_length="56" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0132E21.2" gen_strand="+" ref_id="SGN-E254864" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>486</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0132E21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E254864" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10115" e_stop="10142"/>
          <exon e_start="11758" e_stop="12159"/>
          <exon e_start="13844" e_stop="13899"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATAGTGGATATGGAGATATAATTGCAAGTAATGAACTCTTCCATTGTACAGTTTCTATATTTATTTCACTTGCTCAAAAAAATTAAGTTTTCTTTCTTTCTTTCAATTATTCATTTAGTTCGTTCTAACTTATATTATGTTTGATGGTAGTTAACGTATCAAGTGGTATAACCTGAAATCATATCTTGAGGACGCACTAAAGTGCCCATGGTATCATCATGAACTTGCAAACAGAAACTGTAAAAGCCTAGGAATATACATGCCCAATTGAGATGGGATATGATTACATCACAATTGCATAAGGACACTATCTAATAGATCGTTGTGAGTAGTTGAATCATAATCTTTAGCGTAAACATGGCTGCATGTGCAGCATTCTTGAACTCTCTGATTGCAAGTTTTAGAATAAGGTTGAATATATTTCTGATATTAATCATTTAAGTATCAATAGTTCTACTAACTGATTTTAGATCTGGAAAAATAAGAAAATTAGTCTGCAAAATAGTTTTGACAAAAGCTTTTATTCGTATCTATCTTACTGGCAAAATGACTTCTTGAACTATTGCAAGGGAAATCTCTTGCAGATAGCTGTCACACTCTCTCAGCTGATAATAGTTTTGATTCATTGGGGTAGAAGTAAAATAATTCCTTCAAAATAGATATTTCTGGTACTATTTGTTCCTTTTTATTTTATTAGGTAAAGAAATAAGCGGTCGGATTAACAAGATTTTTTTCTTGTTCTTTTTGTACTGTTAAGGTGATTAGTTAAAATTGACATTGAACTCTTTACTCCTTGCACAAGCCAGCTATCCAACATTCTGCAATTTTGACGCAAACCTGCTGGTTTGCTTTTAATCTCCTAATGCTCTGTTTATCCCATATAAAATGTTGATGAAACTTCTGAACTGTCAATTGATCAACCCAACTATGCTTCCTTCTCTAACTAGTTATTCATGAAGACTGATAGGACGACATATAAAAGGGTTAATTGGATGTTCAATCTGGTGAAGAGAAATTGATCCATGTTTGTCTTCTTTGATTGGCTTGAGCCAGCATGATCCAACAATGGTGCATCTGAAATGTTCATATCAGAAAACTGACAAACTAGCAGAGCAGTTTATTACATAGGAGCGGGGGTTTTACCCTGTGCGCACCCACAGGGTAGCGGCCGTGGGTTTGCCTAGTCATAACAAAGAAAACTAGCAGATTAGTTTTGCCTACCCCCTTCCACTAGGAAAATGAAAGGAATTAGGCACAATTTCCCCCCTAGACTATGACCGAAGTCCTAGAGACACACCTAAACTTAACTAGGGTCCTATTTACCCCCAGCACTCAGTTGTTCCGTGTTTTTGTGCACCTTTTGTGCTGATAACTCATAAAACTTTTGTCAGACTTCAAAAACCATCTTCATCTCTTGCTTTTGAATGATTTATAATTGTTGATTTTTGAGTTAAGTTACCAAATTAAAAAATTGTTGATTTTGAGCAAGTAGCTTCACCTCTTCAAAAATAGTTCCGGGTGCATGTCGGATCCTCCAAAAGTAATGCATTTTTAGAGGATCCGACATGGGTGCGATAGTATCTTGAAGAGTCTGATCATCGTTATTTTGACAAGCAAAGGTTTGATCAGACACATGATACAGTGGCAGGAACCTCTGCTGGTGTGAAGATACTGGCAGTTTTCATTTCAAAAGCTTCTGGAGAAGCACTCACACAGTATGCTGGCTCGGATACGGAAGTATGGTTAATCCCAAGCTTGGAAAACTCAGCTTGGTCAATCATGGCTACATCTTTCATTTCACTACTTTCTATGTCTGCTGTACTTGCAATGTGTTTCTTTGTTCGCCGACATCATATACGAAGAGAACGGCCACGAGCTTCTCGTGTTCGCGAATTTCATGGGATTAGTAGCCGTTTGGTTAAAGCTATGCCAAGTTTGATATTTACGTCAGTTGTGGAGGATAATTCTACATCAGTGACATGTGCTATATGC-CTTGAAGA-TT-ATACTGCTGGAGATAAGCTTAGAATTCTTCCATGCCGGCACAGTAAGTTATCCTCATTCTCTCTTTGATTTTTGGTACCATGCCAGACTAATCAGTGATCATGGTTGATAAGCACTAATGTATCCCCTTTAAACATGAAACAATTTTAGTGTCACCACTAAGGAAACTTGACTTGTCTCCCACCAAAAGCTTATGGTAGTTTGACCTTACTGAAAATGCACCCAGCACCATCACTTCTTGCCACCCCACCTCTGTGGGTTCCTACTGGTGAGTGTGGTATTCTGTTTGTAAGGCGTTTCCATCAGCCTTTGCAATTCATCCATCTCTCAATCTTGTAAATTCCAGACAATAAATTCCCCCCTTTCGCGTCACCCTAATCTGTTGTACCATCGCCTCTTTCTAGCATGAAACTCTGAATAACTTGGGAGAGGTTGTCCTCCTATACTTCTATGCACCTATGTTGGTCCCAAAAGTTGACTCTACTTCCATTCCCTACTTCATAGGTAACTAAGCCATTGAAATCTAGCTAACCTTTGATAATGCTTTTCTAGACCTCCATTTCCCTTCTACGACTCCATGTTTTCGTGCTATACCTCCCTCCACAATGCGTGCTCTTCAACCCCAAATCTCCATAACTACTTCCCAGTAGTGCCTTGTTCAAAACTCTTAAGTTCTGTTGTTCCAGGGATATGAGGAAGATTCCAACTACTAATTCTTGGTCTCCGTTTACCGAGTCCCCCAAGCCTGTCATCATAGTTGTTTAGCTCCAACTTTGTATCATGATGTAGAGAAGATCATTCATCGCTGTATGCATATTCTTCTACCATCTTGACTTTTGCCCTTTCTAAAGTAGCAGAACAGTTATAAATACAGTTCATACCTGATTTTTGAAATTATTTCATTTTCTGAAGTCTCCTTGGGGGTGAACTATGTGAAAACTAGAATTTATGGTTCCAAGTATCATATTATTGGAATATTTCCCTTGTCCCCAGTTGCTCTAATGCTGTATTTGTTGATACATTTCATAGATGTATGTGCACATTCAGAATTTATTTCTGCTGGAGCACTTGGCCTTTTTCAGTTATTAACTTGTCTTATGGGAACTTCACAGAATTTCACACTATGTGTGTTGATGCTTGGCTGACATCATGGAGAACCTTTTGCCCTGTCTGCAAACGGGATGCAAGAACTAGCACTGGTGATCCACCAGCATCAGAATCTACACCATTGCTTTCTTCCAGTCTGCGATCTGTATCTTCAGTGTCATCTCTGAGGTCATCATTAGCATCATCAGAAGTGATACATATAGGCACAGGAGCATCTCGATCACCTTCAGTTTCTCGTCCTCAATCTATCTCTAGCTCTCGTAACCAGCATTCACTTTGGTCTTACCAGTCACCACATCTTGCTATAAGCCGGAGTTCACTGGACCTTCAAAATGCATCTTCTCAAAGATCTCGTGCAGCTTACTTAATTTCATCCAACTCATTGGGTTATCCTTGTTTATCACCTCTTAATTCAAGATATGGGTCTGCATACATTCCTAGTCCTAGCAATCCCTCGTCGAGCTATATGGGATCAACAAGTCGGCAGCCTAACCCACTGCATCACAGTGAATCAATTACAAGCTTTTCACCATTTGCTTCAGCTAACTCTCTTCCTGGATGTGAGTCGTGATTTAATTGATCATGGCAAACATTAATCAAATTGTTGAAGTCCCTTGCAGGGAACTCAGGTTGGGTTATTCTGACCTCAAATTCACGTGAAGACAATAGAGCTGAT</genome_strand>
        <mrna_strand>GATAGTGGATATGGAGATATAATTGCAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCAGGAACCTCTGCTGGTGTGAAGAGACTGGCAGTTTTCATTTCAAAAGCTTCTGGAGAAGCACTCACACAGTATGCTGGCTCGGATACGGAAGTATGGTTAATCCCAAGCTTGGAAAACTCAGCTTGGTCAATCATGGCTACATCTTTCATTTCACTACTTTCTATGTCTGCTGTACTTGCAATGTGTTTCTTTGTTCGCCGACATCATATACGAAGAGAACGGCCACGAGCTTCTCGTGTTCGCGAATTTCATGGGATTAGTAGCCGTTTGGTTAAAGCTATGCCAAGTTTGATATTTACGTCAGTTGTGGAGGATAATTCTACATCAGTGACATGTGCTATATGCGCTTGAAGATTTAACACTGCTGGAGATAAGCTTAGAATTCTTCCATGCCGGCACA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAACTCAGGTTGGGTTATTCTGACCTCAAATTCACGTGAAGACAATAGAGCTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E261793" ref_strand="+" ref_description="SGN-E261793 [cLEG-61-I23]">
      <seq>tagtggatatggagatataattgcaatggcaggaacctctgctggtgtgaagatactggcagttttcatttcaaaagcttctggagaagcactcacacagtatgctggctcggatacggaagtatggttaatcccaagcttggaaaactcagcttggtcaatcatggctacatctttcatttcactactttctatgtctgctgtacttgcaatgtgtttctttgttcgccgacatcatatacgaagagaacggccacgagcttctcgtgttcgcgaatttcatgggattagtagccgtttggttaaagctatgccaagtttgatatttacgtcagttgtggaggataattctacatcagtgacatgtgctatatgccttgaagattatactgctggagataagcttagaattcttccatgccggcacaggaactcaggttgggttattctgacctcaaattcacgtgaagacaatagagctgattcgtgttggttgctttgacatctggacggaggaatacaacagctagcttcattgctcaacacttctgggatattggtttagtagttgataggtttgataattttgagttttttacagagtgtacttcttaaagatgggtgtattactgtacgcattgcgccttcttttgtttatttggctttttttttcttcttaccctcgatttctctaataatagtgatgtttttagccatgtccacctgacagaatggtgaggcctgtagtttgcatgtaaatatgaatgccctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0132E21.2" temp_strand="+" temp_description="C06SLm0132E21.2  AC211087.2 htgs_phase:3 submitted_to_sgn_as:C06SLm0132E21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="9817" stop="14486"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10117" g_stop="10142" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="26" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10143" i_stop="11757" i_length="1615">
            <donor d_prob="0.865" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11758" g_stop="12159" g_length="402"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="428" r_length="402" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12160" i_stop="13843" i_length="1684">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13844" g_stop="14186" g_length="343"/>
          <reference_exon_boundary r_type="cDNA" r_start="429" r_stop="772" r_length="344" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0132E21.2" gen_strand="+" ref_id="SGN-E261793" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>771</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0132E21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E261793" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10117" e_stop="10142"/>
          <exon e_start="11758" e_stop="12159"/>
          <exon e_start="13844" e_stop="14186"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGTGGATATGGAGATATAATTGCAAGTAATGAACTCTTCCATTGTACAGTTTCTATATTTATTTCACTTGCTCAAAAAAATTAAGTTTTCTTTCTTTCTTTCAATTATTCATTTAGTTCGTTCTAACTTATATTATGTTTGATGGTAGTTAACGTATCAAGTGGTATAACCTGAAATCATATCTTGAGGACGCACTAAAGTGCCCATGGTATCATCATGAACTTGCAAACAGAAACTGTAAAAGCCTAGGAATATACATGCCCAATTGAGATGGGATATGATTACATCACAATTGCATAAGGACACTATCTAATAGATCGTTGTGAGTAGTTGAATCATAATCTTTAGCGTAAACATGGCTGCATGTGCAGCATTCTTGAACTCTCTGATTGCAAGTTTTAGAATAAGGTTGAATATATTTCTGATATTAATCATTTAAGTATCAATAGTTCTACTAACTGATTTTAGATCTGGAAAAATAAGAAAATTAGTCTGCAAAATAGTTTTGACAAAAGCTTTTATTCGTATCTATCTTACTGGCAAAATGACTTCTTGAACTATTGCAAGGGAAATCTCTTGCAGATAGCTGTCACACTCTCTCAGCTGATAATAGTTTTGATTCATTGGGGTAGAAGTAAAATAATTCCTTCAAAATAGATATTTCTGGTACTATTTGTTCCTTTTTATTTTATTAGGTAAAGAAATAAGCGGTCGGATTAACAAGATTTTTTTCTTGTTCTTTTTGTACTGTTAAGGTGATTAGTTAAAATTGACATTGAACTCTTTACTCCTTGCACAAGCCAGCTATCCAACATTCTGCAATTTTGACGCAAACCTGCTGGTTTGCTTTTAATCTCCTAATGCTCTGTTTATCCCATATAAAATGTTGATGAAACTTCTGAACTGTCAATTGATCAACCCAACTATGCTTCCTTCTCTAACTAGTTATTCATGAAGACTGATAGGACGACATATAAAAGGGTTAATTGGATGTTCAATCTGGTGAAGAGAAATTGATCCATGTTTGTCTTCTTTGATTGGCTTGAGCCAGCATGATCCAACAATGGTGCATCTGAAATGTTCATATCAGAAAACTGACAAACTAGCAGAGCAGTTTATTACATAGGAGCGGGGGTTTTACCCTGTGCGCACCCACAGGGTAGCGGCCGTGGGTTTGCCTAGTCATAACAAAGAAAACTAGCAGATTAGTTTTGCCTACCCCCTTCCACTAGGAAAATGAAAGGAATTAGGCACAATTTCCCCCCTAGACTATGACCGAAGTCCTAGAGACACACCTAAACTTAACTAGGGTCCTATTTACCCCCAGCACTCAGTTGTTCCGTGTTTTTGTGCACCTTTTGTGCTGATAACTCATAAAACTTTTGTCAGACTTCAAAAACCATCTTCATCTCTTGCTTTTGAATGATTTATAATTGTTGATTTTTGAGTTAAGTTACCAAATTAAAAAATTGTTGATTTTGAGCAAGTAGCTTCACCTCTTCAAAAATAGTTCCGGGTGCATGTCGGATCCTCCAAAAGTAATGCATTTTTAGAGGATCCGACATGGGTGCGATAGTATCTTGAAGAGTCTGATCATCGTTATTTTGACAAGCAAAGGTTTGATCAGACACATGATACAGTGGCAGGAACCTCTGCTGGTGTGAAGATACTGGCAGTTTTCATTTCAAAAGCTTCTGGAGAAGCACTCACACAGTATGCTGGCTCGGATACGGAAGTATGGTTAATCCCAAGCTTGGAAAACTCAGCTTGGTCAATCATGGCTACATCTTTCATTTCACTACTTTCTATGTCTGCTGTACTTGCAATGTGTTTCTTTGTTCGCCGACATCATATACGAAGAGAACGGCCACGAGCTTCTCGTGTTCGCGAATTTCATGGGATTAGTAGCCGTTTGGTTAAAGCTATGCCAAGTTTGATATTTACGTCAGTTGTGGAGGATAATTCTACATCAGTGACATGTGCTATATGCCTTGAAGATTATACTGCTGGAGATAAGCTTAGAATTCTTCCATGCCGGCACAGTAAGTTATCCTCATTCTCTCTTTGATTTTTGGTACCATGCCAGACTAATCAGTGATCATGGTTGATAAGCACTAATGTATCCCCTTTAAACATGAAACAATTTTAGTGTCACCACTAAGGAAACTTGACTTGTCTCCCACCAAAAGCTTATGGTAGTTTGACCTTACTGAAAATGCACCCAGCACCATCACTTCTTGCCACCCCACCTCTGTGGGTTCCTACTGGTGAGTGTGGTATTCTGTTTGTAAGGCGTTTCCATCAGCCTTTGCAATTCATCCATCTCTCAATCTTGTAAATTCCAGACAATAAATTCCCCCCTTTCGCGTCACCCTAATCTGTTGTACCATCGCCTCTTTCTAGCATGAAACTCTGAATAACTTGGGAGAGGTTGTCCTCCTATACTTCTATGCACCTATGTTGGTCCCAAAAGTTGACTCTACTTCCATTCCCTACTTCATAGGTAACTAAGCCATTGAAATCTAGCTAACCTTTGATAATGCTTTTCTAGACCTCCATTTCCCTTCTACGACTCCATGTTTTCGTGCTATACCTCCCTCCACAATGCGTGCTCTTCAACCCCAAATCTCCATAACTACTTCCCAGTAGTGCCTTGTTCAAAACTCTTAAGTTCTGTTGTTCCAGGGATATGAGGAAGATTCCAACTACTAATTCTTGGTCTCCGTTTACCGAGTCCCCCAAGCCTGTCATCATAGTTGTTTAGCTCCAACTTTGTATCATGATGTAGAGAAGATCATTCATCGCTGTATGCATATTCTTCTACCATCTTGACTTTTGCCCTTTCTAAAGTAGCAGAACAGTTATAAATACAGTTCATACCTGATTTTTGAAATTATTTCATTTTCTGAAGTCTCCTTGGGGGTGAACTATGTGAAAACTAGAATTTATGGTTCCAAGTATCATATTATTGGAATATTTCCCTTGTCCCCAGTTGCTCTAATGCTGTATTTGTTGATACATTTCATAGATGTATGTGCACATTCAGAATTTATTTCTGCTGGAGCACTTGGCCTTTTTCAGTTATTAACTTGTCTTATGGGAACTTCACAGAATTTCACACTATGTGTGTTGATGCTTGGCTGACATCATGGAGAACCTTTTGCCCTGTCTGCAAACGGGATGCAAGAACTAGCACTGGTGATCCACCAGCATCAGAATCTACACCATTGCTTTCTTCCAGTCTGCGATCTGTATCTTCAGTGTCATCTCTGAGGTCATCATTAGCATCATCAGAAGTGATACATATAGGCACAGGAGCATCTCGATCACCTTCAGTTTCTCGTCCTCAATCTATCTCTAGCTCTCGTAACCAGCATTCACTTTGGTCTTACCAGTCACCACATCTTGCTATAAGCCGGAGTTCACTGGACCTTCAAAATGCATCTTCTCAAAGATCTCGTGCAGCTTACTTAATTTCATCCAACTCATTGGGTTATCCTTGTTTATCACCTCTTAATTCAAGATATGGGTCTGCATACATTCCTAGTCCTAGCAATCCCTCGTCGAGCTATATGGGATCAACAAGTCGGCAGCCTAACCCACTGCATCACAGTGAATCAATTACAAGCTTTTCACCATTTGCTTCAGCTAACTCTCTTCCTGGATGTGAGTCGTGATTTAATTGATCATGGCAAACATTAATCAAATTGTTGAAGTCCCTTGCAGGGAACTCAGGTTGGGTTATTCTGACCTCAAATTCACGTGAAGACAATAGAGCTGATTCGTGTTGGTTGCTTTGACATCTGGACGGAGGAATACAACAGCTAGCTTCATTGCTCAACACTTCTGGGATATTGGTTTAGTAGTTGATAGGTTTGATAATTTTGAGTTTTTTACAGAGTGTACATTCTTAAAGATGGGTGTATTACTGTACGCATTGCGCCTTCTTTTGTTTA-TTGCTTTTTTTTTTCTTCTTACCCTCGATTTCTCT-ATAATAGTGATGTTTTTAGCCATGTCCACCTGACAGATGGTTGAGGCCTGTAGTTTGCATGTAAATATGAATGCCCTT</genome_strand>
        <mrna_strand>TAGTGGATATGGAGATATAATTGCAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCAGGAACCTCTGCTGGTGTGAAGATACTGGCAGTTTTCATTTCAAAAGCTTCTGGAGAAGCACTCACACAGTATGCTGGCTCGGATACGGAAGTATGGTTAATCCCAAGCTTGGAAAACTCAGCTTGGTCAATCATGGCTACATCTTTCATTTCACTACTTTCTATGTCTGCTGTACTTGCAATGTGTTTCTTTGTTCGCCGACATCATATACGAAGAGAACGGCCACGAGCTTCTCGTGTTCGCGAATTTCATGGGATTAGTAGCCGTTTGGTTAAAGCTATGCCAAGTTTGATATTTACGTCAGTTGTGGAGGATAATTCTACATCAGTGACATGTGCTATATGCCTTGAAGATTATACTGCTGGAGATAAGCTTAGAATTCTTCCATGCCGGCACA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAACTCAGGTTGGGTTATTCTGACCTCAAATTCACGTGAAGACAATAGAGCTGATTCGTGTTGGTTGCTTTGACATCTGGACGGAGGAATACAACAGCTAGCTTCATTGCTCAACACTTCTGGGATATTGGTTTAGTAGTTGATAGGTTTGATAATTTTGAGTTTTTTACAGAGTGTAC-TTCTTAAAGATGGGTGTATTACTGTACGCATTGCGCCTTCTTTTGTTTATTTGGCTTTTTTTTTCTTCTTACCCTCGATTTCTCTAATAATAGTGATGTTTTTAGCCATGTCCACCTGACAGAATGGTGAGGCCTGTAGTTTGCATGTAAATATGAATGCCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E233613" ref_strand="+" ref_description="SGN-E233613 [cLED-14-I1]">
      <seq>gttaatcccaagcttggaaaactcagctaggtcaatcatggctacatctttcatttcactactttctatgtctgctgtacttgcaatgcgtctctttgttcgccgacatcatatacgaagagaacggccacgagcttctcgtgttcgcgaatgtcatgggattagtagccgtttggttaaagctatgccaagtctgatatttacgtcagttgtggaggataatactacatcagagacatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0132E21.2" temp_strand="+" temp_description="C06SLm0132E21.2  AC211087.2 htgs_phase:3 submitted_to_sgn_as:C06SLm0132E21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11558" stop="12398"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11858" g_stop="12098" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="241" r_length="241" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0132E21.2" gen_strand="+" ref_id="SGN-E233613" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>241</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0132E21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E233613" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11858" e_stop="12098"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTAATCCCAAGCTTGGAAAACTCAGCTTGGTCAATCATGGCTACATCTTTCATTTCACTACTTTCTATGTCTGCTGTACTTGCAATGTGTTTCTTTGTTCGCCGACATCATATACGAAGAGAACGGCCACGAGCTTCTCGTGTTCGCGAATTTCATGGGATTAGTAGCCGTTTGGTTAAAGCTATGCCAAGTTTGATATTTACGTCAGTTGTGGAGGATAATTCTACATCAGTGACATGT</genome_strand>
        <mrna_strand>GTTAATCCCAAGCTTGGAAAACTCAGCTAGGTCAATCATGGCTACATCTTTCATTTCACTACTTTCTATGTCTGCTGTACTTGCAATGCGTCTCTTTGTTCGCCGACATCATATACGAAGAGAACGGCCACGAGCTTCTCGTGTTCGCGAATGTCATGGGATTAGTAGCCGTTTGGTTAAAGCTATGCCAAGTCTGATATTTACGTCAGTTGTGGAGGATAATACTACATCAGAGACATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E236446" ref_strand="+" ref_description="SGN-E236446 [cLED-13-J23]">
      <seq>taatcccaagcttggaaaactcagcttggtcaatcatggctacatctttcatttcactactttctatgtctgctgtacttgcaatgtgtttctttgttcgccgacatcatatacgaagagaacggccacgagcttctcgtgttcgcgaatttcatgggattagtagccgtttggttaaagctatgccaagtttgatatttacgtcagttgtggaggataattctacatcagtgacatgtgctatatgccttgaagattatactgctggagataagcttagaattcttccatgccggcacaaatttcacactatgtgtgttgatgcttggctgacatcatggagaaccttttgccctgtctgcaaacgggatgcaagaactagcactggtgatccaccagcatcagaatctacaccattgctttcttccagtctgcgatctgtatcttcagtgtcatctctgaggtcatcattagcatcatcagaagtgatacatataggcacaggagcatctcgatcaccttcagtttctcgtcctcaatctatctctagctctcgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0132E21.2" temp_strand="+" temp_description="C06SLm0132E21.2  AC211087.2 htgs_phase:3 submitted_to_sgn_as:C06SLm0132E21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11560" stop="13785"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11860" g_stop="12159" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="300" r_length="300" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12160" i_stop="13228" i_length="1069">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.226" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13229" g_stop="13485" g_length="257"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="557" r_length="257" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0132E21.2" gen_strand="+" ref_id="SGN-E236446" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0132E21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E236446" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11860" e_stop="12159"/>
          <exon e_start="13229" e_stop="13485"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATCCCAAGCTTGGAAAACTCAGCTTGGTCAATCATGGCTACATCTTTCATTTCACTACTTTCTATGTCTGCTGTACTTGCAATGTGTTTCTTTGTTCGCCGACATCATATACGAAGAGAACGGCCACGAGCTTCTCGTGTTCGCGAATTTCATGGGATTAGTAGCCGTTTGGTTAAAGCTATGCCAAGTTTGATATTTACGTCAGTTGTGGAGGATAATTCTACATCAGTGACATGTGCTATATGCCTTGAAGATTATACTGCTGGAGATAAGCTTAGAATTCTTCCATGCCGGCACAGTAAGTTATCCTCATTCTCTCTTTGATTTTTGGTACCATGCCAGACTAATCAGTGATCATGGTTGATAAGCACTAATGTATCCCCTTTAAACATGAAACAATTTTAGTGTCACCACTAAGGAAACTTGACTTGTCTCCCACCAAAAGCTTATGGTAGTTTGACCTTACTGAAAATGCACCCAGCACCATCACTTCTTGCCACCCCACCTCTGTGGGTTCCTACTGGTGAGTGTGGTATTCTGTTTGTAAGGCGTTTCCATCAGCCTTTGCAATTCATCCATCTCTCAATCTTGTAAATTCCAGACAATAAATTCCCCCCTTTCGCGTCACCCTAATCTGTTGTACCATCGCCTCTTTCTAGCATGAAACTCTGAATAACTTGGGAGAGGTTGTCCTCCTATACTTCTATGCACCTATGTTGGTCCCAAAAGTTGACTCTACTTCCATTCCCTACTTCATAGGTAACTAAGCCATTGAAATCTAGCTAACCTTTGATAATGCTTTTCTAGACCTCCATTTCCCTTCTACGACTCCATGTTTTCGTGCTATACCTCCCTCCACAATGCGTGCTCTTCAACCCCAAATCTCCATAACTACTTCCCAGTAGTGCCTTGTTCAAAACTCTTAAGTTCTGTTGTTCCAGGGATATGAGGAAGATTCCAACTACTAATTCTTGGTCTCCGTTTACCGAGTCCCCCAAGCCTGTCATCATAGTTGTTTAGCTCCAACTTTGTATCATGATGTAGAGAAGATCATTCATCGCTGTATGCATATTCTTCTACCATCTTGACTTTTGCCCTTTCTAAAGTAGCAGAACAGTTATAAATACAGTTCATACCTGATTTTTGAAATTATTTCATTTTCTGAAGTCTCCTTGGGGGTGAACTATGTGAAAACTAGAATTTATGGTTCCAAGTATCATATTATTGGAATATTTCCCTTGTCCCCAGTTGCTCTAATGCTGTATTTGTTGATACATTTCATAGATGTATGTGCACATTCAGAATTTATTTCTGCTGGAGCACTTGGCCTTTTTCAGTTATTAACTTGTCTTATGGGAACTTCACAGAATTTCACACTATGTGTGTTGATGCTTGGCTGACATCATGGAGAACCTTTTGCCCTGTCTGCAAACGGGATGCAAGAACTAGCACTGGTGATCCACCAGCATCAGAATCTACACCATTGCTTTCTTCCAGTCTGCGATCTGTATCTTCAGTGTCATCTCTGAGGTCATCATTAGCATCATCAGAAGTGATACATATAGGCACAGGAGCATCTCGATCACCTTCAGTTTCTCGTCCTCAATCTATCTCTAGCTCTCGT</genome_strand>
        <mrna_strand>TAATCCCAAGCTTGGAAAACTCAGCTTGGTCAATCATGGCTACATCTTTCATTTCACTACTTTCTATGTCTGCTGTACTTGCAATGTGTTTCTTTGTTCGCCGACATCATATACGAAGAGAACGGCCACGAGCTTCTCGTGTTCGCGAATTTCATGGGATTAGTAGCCGTTTGGTTAAAGCTATGCCAAGTTTGATATTTACGTCAGTTGTGGAGGATAATTCTACATCAGTGACATGTGCTATATGCCTTGAAGATTATACTGCTGGAGATAAGCTTAGAATTCTTCCATGCCGGCACA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTTCACACTATGTGTGTTGATGCTTGGCTGACATCATGGAGAACCTTTTGCCCTGTCTGCAAACGGGATGCAAGAACTAGCACTGGTGATCCACCAGCATCAGAATCTACACCATTGCTTTCTTCCAGTCTGCGATCTGTATCTTCAGTGTCATCTCTGAGGTCATCATTAGCATCATCAGAAGTGATACATATAGGCACAGGAGCATCTCGATCACCTTCAGTTTCTCGTCCTCAATCTATCTCTAGCTCTCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E232832" ref_strand="+" ref_description="SGN-E232832 [cLED-8-G9]">
      <seq>taatcccaagcttggaaaactcagcttggtcaatcatggctacatctttcatttcactactttctatgtctgctgtacttgcaatgtgtttctttgttcgccgacatcatatacgaagagaacggccacgagcttctcgtgttcgcgaatttcatgggattagtagccgtttggttaaagctatgccaagtttgatatttacgtcagttgtggaggataattctacatcagtgacatgtgctatatgccttgaagattatactgctggagataagcttagaattcttccatgccggcacaaatttcacactatgtgtgttgatgcttggctgacatcatggagaaccttttgccctgtctgcaaacgggatgcaagaactagcactggtgatccaccagcatcagaatctacaccattgctttcttccagtctgcgatctgtatcttcagtgtcatctctgaggtcatcattagcatcatcagaagtgatacatataggcacaggagcatctcgatcaccttcagtttctcgtcctcaatctatctctagctctcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0132E21.2" temp_strand="+" temp_description="C06SLm0132E21.2  AC211087.2 htgs_phase:3 submitted_to_sgn_as:C06SLm0132E21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11560" stop="13784"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11860" g_stop="12159" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="300" r_length="300" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12160" i_stop="13228" i_length="1069">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.226" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13229" g_stop="13484" g_length="256"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="556" r_length="256" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0132E21.2" gen_strand="+" ref_id="SGN-E232832" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0132E21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E232832" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11860" e_stop="12159"/>
          <exon e_start="13229" e_stop="13484"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATCCCAAGCTTGGAAAACTCAGCTTGGTCAATCATGGCTACATCTTTCATTTCACTACTTTCTATGTCTGCTGTACTTGCAATGTGTTTCTTTGTTCGCCGACATCATATACGAAGAGAACGGCCACGAGCTTCTCGTGTTCGCGAATTTCATGGGATTAGTAGCCGTTTGGTTAAAGCTATGCCAAGTTTGATATTTACGTCAGTTGTGGAGGATAATTCTACATCAGTGACATGTGCTATATGCCTTGAAGATTATACTGCTGGAGATAAGCTTAGAATTCTTCCATGCCGGCACAGTAAGTTATCCTCATTCTCTCTTTGATTTTTGGTACCATGCCAGACTAATCAGTGATCATGGTTGATAAGCACTAATGTATCCCCTTTAAACATGAAACAATTTTAGTGTCACCACTAAGGAAACTTGACTTGTCTCCCACCAAAAGCTTATGGTAGTTTGACCTTACTGAAAATGCACCCAGCACCATCACTTCTTGCCACCCCACCTCTGTGGGTTCCTACTGGTGAGTGTGGTATTCTGTTTGTAAGGCGTTTCCATCAGCCTTTGCAATTCATCCATCTCTCAATCTTGTAAATTCCAGACAATAAATTCCCCCCTTTCGCGTCACCCTAATCTGTTGTACCATCGCCTCTTTCTAGCATGAAACTCTGAATAACTTGGGAGAGGTTGTCCTCCTATACTTCTATGCACCTATGTTGGTCCCAAAAGTTGACTCTACTTCCATTCCCTACTTCATAGGTAACTAAGCCATTGAAATCTAGCTAACCTTTGATAATGCTTTTCTAGACCTCCATTTCCCTTCTACGACTCCATGTTTTCGTGCTATACCTCCCTCCACAATGCGTGCTCTTCAACCCCAAATCTCCATAACTACTTCCCAGTAGTGCCTTGTTCAAAACTCTTAAGTTCTGTTGTTCCAGGGATATGAGGAAGATTCCAACTACTAATTCTTGGTCTCCGTTTACCGAGTCCCCCAAGCCTGTCATCATAGTTGTTTAGCTCCAACTTTGTATCATGATGTAGAGAAGATCATTCATCGCTGTATGCATATTCTTCTACCATCTTGACTTTTGCCCTTTCTAAAGTAGCAGAACAGTTATAAATACAGTTCATACCTGATTTTTGAAATTATTTCATTTTCTGAAGTCTCCTTGGGGGTGAACTATGTGAAAACTAGAATTTATGGTTCCAAGTATCATATTATTGGAATATTTCCCTTGTCCCCAGTTGCTCTAATGCTGTATTTGTTGATACATTTCATAGATGTATGTGCACATTCAGAATTTATTTCTGCTGGAGCACTTGGCCTTTTTCAGTTATTAACTTGTCTTATGGGAACTTCACAGAATTTCACACTATGTGTGTTGATGCTTGGCTGACATCATGGAGAACCTTTTGCCCTGTCTGCAAACGGGATGCAAGAACTAGCACTGGTGATCCACCAGCATCAGAATCTACACCATTGCTTTCTTCCAGTCTGCGATCTGTATCTTCAGTGTCATCTCTGAGGTCATCATTAGCATCATCAGAAGTGATACATATAGGCACAGGAGCATCTCGATCACCTTCAGTTTCTCGTCCTCAATCTATCTCTAGCTCTCG</genome_strand>
        <mrna_strand>TAATCCCAAGCTTGGAAAACTCAGCTTGGTCAATCATGGCTACATCTTTCATTTCACTACTTTCTATGTCTGCTGTACTTGCAATGTGTTTCTTTGTTCGCCGACATCATATACGAAGAGAACGGCCACGAGCTTCTCGTGTTCGCGAATTTCATGGGATTAGTAGCCGTTTGGTTAAAGCTATGCCAAGTTTGATATTTACGTCAGTTGTGGAGGATAATTCTACATCAGTGACATGTGCTATATGCCTTGAAGATTATACTGCTGGAGATAAGCTTAGAATTCTTCCATGCCGGCACA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTTCACACTATGTGTGTTGATGCTTGGCTGACATCATGGAGAACCTTTTGCCCTGTCTGCAAACGGGATGCAAGAACTAGCACTGGTGATCCACCAGCATCAGAATCTACACCATTGCTTTCTTCCAGTCTGCGATCTGTATCTTCAGTGTCATCTCTGAGGTCATCATTAGCATCATCAGAAGTGATACATATAGGCACAGGAGCATCTCGATCACCTTCAGTTTCTCGTCCTCAATCTATCTCTAGCTCTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E236184" ref_strand="+" ref_description="SGN-E236184 [cLED-20-I19]">
      <seq>taatcccaagtcttgtaaaactcagcttggtcaatcatggctacatctttcatttcactactttctatgtctgctgtacttgcaatgtgtttctttgttcgccgacatcatatacgaagagaacggccacgagcttctcgtgttcgcgaatttcatgggattagtagccgtttggttaaagctatgccaagtttgatatttacgtcagttgtggaggataattctacatcagtgacatgtgctatatgccttgaagattatactgctggagataagcttagaattcttccatgccggcacaaatttcacactatgtgtgttgatgcttggctgacatcatggagaaccttttgccctgtctgcaaacgggatgcaagaactagcactggtgatccaccagcatcagaatctacaccattgctttcttccagtctgcgatctgtatcttcagtgtcatctctgaggtcatcattagcatcatcagaagtgatacatataggcacaggagcatctcgatcaccttcagtttctcggcctcaatctatctctagctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0132E21.2" temp_strand="+" temp_description="C06SLm0132E21.2  AC211087.2 htgs_phase:3 submitted_to_sgn_as:C06SLm0132E21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11560" stop="13781"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11860" g_stop="12159" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="301" r_length="301" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12160" i_stop="13228" i_length="1069">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.226" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13229" g_stop="13481" g_length="253"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="554" r_length="253" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0132E21.2" gen_strand="+" ref_id="SGN-E236184" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0132E21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E236184" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11860" e_stop="12159"/>
          <exon e_start="13229" e_stop="13481"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATCCCAAG-CTTGGAAAACTCAGCTTGGTCAATCATGGCTACATCTTTCATTTCACTACTTTCTATGTCTGCTGTACTTGCAATGTGTTTCTTTGTTCGCCGACATCATATACGAAGAGAACGGCCACGAGCTTCTCGTGTTCGCGAATTTCATGGGATTAGTAGCCGTTTGGTTAAAGCTATGCCAAGTTTGATATTTACGTCAGTTGTGGAGGATAATTCTACATCAGTGACATGTGCTATATGCCTTGAAGATTATACTGCTGGAGATAAGCTTAGAATTCTTCCATGCCGGCACAGTAAGTTATCCTCATTCTCTCTTTGATTTTTGGTACCATGCCAGACTAATCAGTGATCATGGTTGATAAGCACTAATGTATCCCCTTTAAACATGAAACAATTTTAGTGTCACCACTAAGGAAACTTGACTTGTCTCCCACCAAAAGCTTATGGTAGTTTGACCTTACTGAAAATGCACCCAGCACCATCACTTCTTGCCACCCCACCTCTGTGGGTTCCTACTGGTGAGTGTGGTATTCTGTTTGTAAGGCGTTTCCATCAGCCTTTGCAATTCATCCATCTCTCAATCTTGTAAATTCCAGACAATAAATTCCCCCCTTTCGCGTCACCCTAATCTGTTGTACCATCGCCTCTTTCTAGCATGAAACTCTGAATAACTTGGGAGAGGTTGTCCTCCTATACTTCTATGCACCTATGTTGGTCCCAAAAGTTGACTCTACTTCCATTCCCTACTTCATAGGTAACTAAGCCATTGAAATCTAGCTAACCTTTGATAATGCTTTTCTAGACCTCCATTTCCCTTCTACGACTCCATGTTTTCGTGCTATACCTCCCTCCACAATGCGTGCTCTTCAACCCCAAATCTCCATAACTACTTCCCAGTAGTGCCTTGTTCAAAACTCTTAAGTTCTGTTGTTCCAGGGATATGAGGAAGATTCCAACTACTAATTCTTGGTCTCCGTTTACCGAGTCCCCCAAGCCTGTCATCATAGTTGTTTAGCTCCAACTTTGTATCATGATGTAGAGAAGATCATTCATCGCTGTATGCATATTCTTCTACCATCTTGACTTTTGCCCTTTCTAAAGTAGCAGAACAGTTATAAATACAGTTCATACCTGATTTTTGAAATTATTTCATTTTCTGAAGTCTCCTTGGGGGTGAACTATGTGAAAACTAGAATTTATGGTTCCAAGTATCATATTATTGGAATATTTCCCTTGTCCCCAGTTGCTCTAATGCTGTATTTGTTGATACATTTCATAGATGTATGTGCACATTCAGAATTTATTTCTGCTGGAGCACTTGGCCTTTTTCAGTTATTAACTTGTCTTATGGGAACTTCACAGAATTTCACACTATGTGTGTTGATGCTTGGCTGACATCATGGAGAACCTTTTGCCCTGTCTGCAAACGGGATGCAAGAACTAGCACTGGTGATCCACCAGCATCAGAATCTACACCATTGCTTTCTTCCAGTCTGCGATCTGTATCTTCAGTGTCATCTCTGAGGTCATCATTAGCATCATCAGAAGTGATACATATAGGCACAGGAGCATCTCGATCACCTTCAGTTTCTCGTCCTCAATCTATCTCTAGCTC</genome_strand>
        <mrna_strand>TAATCCCAAGTCTTGTAAAACTCAGCTTGGTCAATCATGGCTACATCTTTCATTTCACTACTTTCTATGTCTGCTGTACTTGCAATGTGTTTCTTTGTTCGCCGACATCATATACGAAGAGAACGGCCACGAGCTTCTCGTGTTCGCGAATTTCATGGGATTAGTAGCCGTTTGGTTAAAGCTATGCCAAGTTTGATATTTACGTCAGTTGTGGAGGATAATTCTACATCAGTGACATGTGCTATATGCCTTGAAGATTATACTGCTGGAGATAAGCTTAGAATTCTTCCATGCCGGCACA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTTCACACTATGTGTGTTGATGCTTGGCTGACATCATGGAGAACCTTTTGCCCTGTCTGCAAACGGGATGCAAGAACTAGCACTGGTGATCCACCAGCATCAGAATCTACACCATTGCTTTCTTCCAGTCTGCGATCTGTATCTTCAGTGTCATCTCTGAGGTCATCATTAGCATCATCAGAAGTGATACATATAGGCACAGGAGCATCTCGATCACCTTCAGTTTCTCGGCCTCAATCTATCTCTAGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E376880" ref_strand="+" ref_description="SGN-E376880 [TUS-19-F9]">
      <seq>taatcccaagcttggaaaactcagcttggtcaatcatggctacatctttcatttcactactttctatgtctgctgtacttgcaatgtgtttctttgttcgccgacatcatatacgaagagaacggccacgagcttctcgtgttcgcgaatttcatgggattagtagccgtttggttaaagctatgccaagtttgatatttacgtcagttgtggaggataattctacatcagtgacatgtgctatatgccttgaagattatactgctggagataagcttagaattcttccatgccggcacaaatttcacactatgtgtgttgatgcttggctgacatcatggagaaccttttgccctgtctgcaaacgggatgcaagaactagcactggtgatccaccagcatcagaatctacaccattgctttcttccagtctgcgatctgtatcttcagtgtcatctctgaggtcatcattagcatcatcagaagtgatacatataggcacaggagcatctcgatcaccttcagtttctcgttctcaatcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0132E21.2" temp_strand="+" temp_description="C06SLm0132E21.2  AC211087.2 htgs_phase:3 submitted_to_sgn_as:C06SLm0132E21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11560" stop="13771"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11860" g_stop="12159" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="300" r_length="300" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12160" i_stop="13228" i_length="1069">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.226" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13229" g_stop="13471" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="543" r_length="243" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0132E21.2" gen_strand="+" ref_id="SGN-E376880" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>543</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0132E21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E376880" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11860" e_stop="12159"/>
          <exon e_start="13229" e_stop="13471"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATCCCAAGCTTGGAAAACTCAGCTTGGTCAATCATGGCTACATCTTTCATTTCACTACTTTCTATGTCTGCTGTACTTGCAATGTGTTTCTTTGTTCGCCGACATCATATACGAAGAGAACGGCCACGAGCTTCTCGTGTTCGCGAATTTCATGGGATTAGTAGCCGTTTGGTTAAAGCTATGCCAAGTTTGATATTTACGTCAGTTGTGGAGGATAATTCTACATCAGTGACATGTGCTATATGCCTTGAAGATTATACTGCTGGAGATAAGCTTAGAATTCTTCCATGCCGGCACAGTAAGTTATCCTCATTCTCTCTTTGATTTTTGGTACCATGCCAGACTAATCAGTGATCATGGTTGATAAGCACTAATGTATCCCCTTTAAACATGAAACAATTTTAGTGTCACCACTAAGGAAACTTGACTTGTCTCCCACCAAAAGCTTATGGTAGTTTGACCTTACTGAAAATGCACCCAGCACCATCACTTCTTGCCACCCCACCTCTGTGGGTTCCTACTGGTGAGTGTGGTATTCTGTTTGTAAGGCGTTTCCATCAGCCTTTGCAATTCATCCATCTCTCAATCTTGTAAATTCCAGACAATAAATTCCCCCCTTTCGCGTCACCCTAATCTGTTGTACCATCGCCTCTTTCTAGCATGAAACTCTGAATAACTTGGGAGAGGTTGTCCTCCTATACTTCTATGCACCTATGTTGGTCCCAAAAGTTGACTCTACTTCCATTCCCTACTTCATAGGTAACTAAGCCATTGAAATCTAGCTAACCTTTGATAATGCTTTTCTAGACCTCCATTTCCCTTCTACGACTCCATGTTTTCGTGCTATACCTCCCTCCACAATGCGTGCTCTTCAACCCCAAATCTCCATAACTACTTCCCAGTAGTGCCTTGTTCAAAACTCTTAAGTTCTGTTGTTCCAGGGATATGAGGAAGATTCCAACTACTAATTCTTGGTCTCCGTTTACCGAGTCCCCCAAGCCTGTCATCATAGTTGTTTAGCTCCAACTTTGTATCATGATGTAGAGAAGATCATTCATCGCTGTATGCATATTCTTCTACCATCTTGACTTTTGCCCTTTCTAAAGTAGCAGAACAGTTATAAATACAGTTCATACCTGATTTTTGAAATTATTTCATTTTCTGAAGTCTCCTTGGGGGTGAACTATGTGAAAACTAGAATTTATGGTTCCAAGTATCATATTATTGGAATATTTCCCTTGTCCCCAGTTGCTCTAATGCTGTATTTGTTGATACATTTCATAGATGTATGTGCACATTCAGAATTTATTTCTGCTGGAGCACTTGGCCTTTTTCAGTTATTAACTTGTCTTATGGGAACTTCACAGAATTTCACACTATGTGTGTTGATGCTTGGCTGACATCATGGAGAACCTTTTGCCCTGTCTGCAAACGGGATGCAAGAACTAGCACTGGTGATCCACCAGCATCAGAATCTACACCATTGCTTTCTTCCAGTCTGCGATCTGTATCTTCAGTGTCATCTCTGAGGTCATCATTAGCATCATCAGAAGTGATACATATAGGCACAGGAGCATCTCGATCACCTTCAGTTTCTCGTCCTCAATCTA</genome_strand>
        <mrna_strand>TAATCCCAAGCTTGGAAAACTCAGCTTGGTCAATCATGGCTACATCTTTCATTTCACTACTTTCTATGTCTGCTGTACTTGCAATGTGTTTCTTTGTTCGCCGACATCATATACGAAGAGAACGGCCACGAGCTTCTCGTGTTCGCGAATTTCATGGGATTAGTAGCCGTTTGGTTAAAGCTATGCCAAGTTTGATATTTACGTCAGTTGTGGAGGATAATTCTACATCAGTGACATGTGCTATATGCCTTGAAGATTATACTGCTGGAGATAAGCTTAGAATTCTTCCATGCCGGCACA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTTCACACTATGTGTGTTGATGCTTGGCTGACATCATGGAGAACCTTTTGCCCTGTCTGCAAACGGGATGCAAGAACTAGCACTGGTGATCCACCAGCATCAGAATCTACACCATTGCTTTCTTCCAGTCTGCGATCTGTATCTTCAGTGTCATCTCTGAGGTCATCATTAGCATCATCAGAAGTGATACATATAGGCACAGGAGCATCTCGATCACCTTCAGTTTCTCGTTCTCAATCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E231130" ref_strand="+" ref_description="SGN-E231130 [cLED-5-E11]">
      <seq>taatcccaagcttggaaaactcagcttggtcaatcatggctacatctttcatttcactactttctatgtctgctgtacttgcaatgtgtttctttgttcgccgacatcatatacgaagagaacggccacgagcttctcgtgttcgcgaatttcatgggattagtagccgtttggttaaagctatgccaagtttgatatttacgtcagttgtggaggataattctacatcagtgacatgtgctatatgccttgaagattatactgctggagataagcttagaattcttccatgccggcacaaatttcacactatgtgtgttgatgcttggctgacatcatggagaaccttttgccctgtctgcaaacgggatgcaagaactagcactggtgatccaccagcatcagaatctacaccattgctttcttccagtctgcgatctgtatcttcagtgtcatctctgaggtcatcattagcatcatcagaagtgatacatataggcacaggagcatctcgatcaccttcagtttctcgtcctcaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0132E21.2" temp_strand="+" temp_description="C06SLm0132E21.2  AC211087.2 htgs_phase:3 submitted_to_sgn_as:C06SLm0132E21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11560" stop="13769"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11860" g_stop="12159" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="300" r_length="300" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12160" i_stop="13228" i_length="1069">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.226" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13229" g_stop="13469" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="541" r_length="241" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0132E21.2" gen_strand="+" ref_id="SGN-E231130" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0132E21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E231130" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11860" e_stop="12159"/>
          <exon e_start="13229" e_stop="13469"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATCCCAAGCTTGGAAAACTCAGCTTGGTCAATCATGGCTACATCTTTCATTTCACTACTTTCTATGTCTGCTGTACTTGCAATGTGTTTCTTTGTTCGCCGACATCATATACGAAGAGAACGGCCACGAGCTTCTCGTGTTCGCGAATTTCATGGGATTAGTAGCCGTTTGGTTAAAGCTATGCCAAGTTTGATATTTACGTCAGTTGTGGAGGATAATTCTACATCAGTGACATGTGCTATATGCCTTGAAGATTATACTGCTGGAGATAAGCTTAGAATTCTTCCATGCCGGCACAGTAAGTTATCCTCATTCTCTCTTTGATTTTTGGTACCATGCCAGACTAATCAGTGATCATGGTTGATAAGCACTAATGTATCCCCTTTAAACATGAAACAATTTTAGTGTCACCACTAAGGAAACTTGACTTGTCTCCCACCAAAAGCTTATGGTAGTTTGACCTTACTGAAAATGCACCCAGCACCATCACTTCTTGCCACCCCACCTCTGTGGGTTCCTACTGGTGAGTGTGGTATTCTGTTTGTAAGGCGTTTCCATCAGCCTTTGCAATTCATCCATCTCTCAATCTTGTAAATTCCAGACAATAAATTCCCCCCTTTCGCGTCACCCTAATCTGTTGTACCATCGCCTCTTTCTAGCATGAAACTCTGAATAACTTGGGAGAGGTTGTCCTCCTATACTTCTATGCACCTATGTTGGTCCCAAAAGTTGACTCTACTTCCATTCCCTACTTCATAGGTAACTAAGCCATTGAAATCTAGCTAACCTTTGATAATGCTTTTCTAGACCTCCATTTCCCTTCTACGACTCCATGTTTTCGTGCTATACCTCCCTCCACAATGCGTGCTCTTCAACCCCAAATCTCCATAACTACTTCCCAGTAGTGCCTTGTTCAAAACTCTTAAGTTCTGTTGTTCCAGGGATATGAGGAAGATTCCAACTACTAATTCTTGGTCTCCGTTTACCGAGTCCCCCAAGCCTGTCATCATAGTTGTTTAGCTCCAACTTTGTATCATGATGTAGAGAAGATCATTCATCGCTGTATGCATATTCTTCTACCATCTTGACTTTTGCCCTTTCTAAAGTAGCAGAACAGTTATAAATACAGTTCATACCTGATTTTTGAAATTATTTCATTTTCTGAAGTCTCCTTGGGGGTGAACTATGTGAAAACTAGAATTTATGGTTCCAAGTATCATATTATTGGAATATTTCCCTTGTCCCCAGTTGCTCTAATGCTGTATTTGTTGATACATTTCATAGATGTATGTGCACATTCAGAATTTATTTCTGCTGGAGCACTTGGCCTTTTTCAGTTATTAACTTGTCTTATGGGAACTTCACAGAATTTCACACTATGTGTGTTGATGCTTGGCTGACATCATGGAGAACCTTTTGCCCTGTCTGCAAACGGGATGCAAGAACTAGCACTGGTGATCCACCAGCATCAGAATCTACACCATTGCTTTCTTCCAGTCTGCGATCTGTATCTTCAGTGTCATCTCTGAGGTCATCATTAGCATCATCAGAAGTGATACATATAGGCACAGGAGCATCTCGATCACCTTCAGTTTCTCGTCCTCAATC</genome_strand>
        <mrna_strand>TAATCCCAAGCTTGGAAAACTCAGCTTGGTCAATCATGGCTACATCTTTCATTTCACTACTTTCTATGTCTGCTGTACTTGCAATGTGTTTCTTTGTTCGCCGACATCATATACGAAGAGAACGGCCACGAGCTTCTCGTGTTCGCGAATTTCATGGGATTAGTAGCCGTTTGGTTAAAGCTATGCCAAGTTTGATATTTACGTCAGTTGTGGAGGATAATTCTACATCAGTGACATGTGCTATATGCCTTGAAGATTATACTGCTGGAGATAAGCTTAGAATTCTTCCATGCCGGCACA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTTCACACTATGTGTGTTGATGCTTGGCTGACATCATGGAGAACCTTTTGCCCTGTCTGCAAACGGGATGCAAGAACTAGCACTGGTGATCCACCAGCATCAGAATCTACACCATTGCTTTCTTCCAGTCTGCGATCTGTATCTTCAGTGTCATCTCTGAGGTCATCATTAGCATCATCAGAAGTGATACATATAGGCACAGGAGCATCTCGATCACCTTCAGTTTCTCGTCCTCAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E230943" ref_strand="+" ref_description="SGN-E230943 [cLED-5-C1]">
      <seq>taatcccaagcttggaaaactcagcttggtcaatcatggctacatctttcatttcactactttctatgtctgctgtacttgcaatgtgtttctttgttcgccgacatcatatacgaagagaacggccacgagcttctcgtgttcgcgaatttcatgggattagtagccgtttggataaagctatgccaagttcgatatttacgtcagttgtggaggataattctacatcagtgacatgtgctatatgccttgaagattatactgctggagataagcttagaattcttccatgccggcacaaatttcacactatgtgtgttgatgcttggctgacatcatggagaaccttttgccctgtctgcaaacgggatgcaagaactagcactggtgatccaccagcatcagaatctacaccattgctttcttccagtctgcgatctgtatcttcagtgacatctctgaggtcatcattagcatcatcagaagtgatacatataggcacaggagcatctcgatcaccttcagttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0132E21.2" temp_strand="+" temp_description="C06SLm0132E21.2  AC211087.2 htgs_phase:3 submitted_to_sgn_as:C06SLm0132E21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11560" stop="13756"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11860" g_stop="12159" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="300" r_length="300" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12160" i_stop="13228" i_length="1069">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.226" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13229" g_stop="13456" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="528" r_length="228" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0132E21.2" gen_strand="+" ref_id="SGN-E230943" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>528</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0132E21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E230943" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11860" e_stop="12159"/>
          <exon e_start="13229" e_stop="13456"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATCCCAAGCTTGGAAAACTCAGCTTGGTCAATCATGGCTACATCTTTCATTTCACTACTTTCTATGTCTGCTGTACTTGCAATGTGTTTCTTTGTTCGCCGACATCATATACGAAGAGAACGGCCACGAGCTTCTCGTGTTCGCGAATTTCATGGGATTAGTAGCCGTTTGGTTAAAGCTATGCCAAGTTTGATATTTACGTCAGTTGTGGAGGATAATTCTACATCAGTGACATGTGCTATATGCCTTGAAGATTATACTGCTGGAGATAAGCTTAGAATTCTTCCATGCCGGCACAGTAAGTTATCCTCATTCTCTCTTTGATTTTTGGTACCATGCCAGACTAATCAGTGATCATGGTTGATAAGCACTAATGTATCCCCTTTAAACATGAAACAATTTTAGTGTCACCACTAAGGAAACTTGACTTGTCTCCCACCAAAAGCTTATGGTAGTTTGACCTTACTGAAAATGCACCCAGCACCATCACTTCTTGCCACCCCACCTCTGTGGGTTCCTACTGGTGAGTGTGGTATTCTGTTTGTAAGGCGTTTCCATCAGCCTTTGCAATTCATCCATCTCTCAATCTTGTAAATTCCAGACAATAAATTCCCCCCTTTCGCGTCACCCTAATCTGTTGTACCATCGCCTCTTTCTAGCATGAAACTCTGAATAACTTGGGAGAGGTTGTCCTCCTATACTTCTATGCACCTATGTTGGTCCCAAAAGTTGACTCTACTTCCATTCCCTACTTCATAGGTAACTAAGCCATTGAAATCTAGCTAACCTTTGATAATGCTTTTCTAGACCTCCATTTCCCTTCTACGACTCCATGTTTTCGTGCTATACCTCCCTCCACAATGCGTGCTCTTCAACCCCAAATCTCCATAACTACTTCCCAGTAGTGCCTTGTTCAAAACTCTTAAGTTCTGTTGTTCCAGGGATATGAGGAAGATTCCAACTACTAATTCTTGGTCTCCGTTTACCGAGTCCCCCAAGCCTGTCATCATAGTTGTTTAGCTCCAACTTTGTATCATGATGTAGAGAAGATCATTCATCGCTGTATGCATATTCTTCTACCATCTTGACTTTTGCCCTTTCTAAAGTAGCAGAACAGTTATAAATACAGTTCATACCTGATTTTTGAAATTATTTCATTTTCTGAAGTCTCCTTGGGGGTGAACTATGTGAAAACTAGAATTTATGGTTCCAAGTATCATATTATTGGAATATTTCCCTTGTCCCCAGTTGCTCTAATGCTGTATTTGTTGATACATTTCATAGATGTATGTGCACATTCAGAATTTATTTCTGCTGGAGCACTTGGCCTTTTTCAGTTATTAACTTGTCTTATGGGAACTTCACAGAATTTCACACTATGTGTGTTGATGCTTGGCTGACATCATGGAGAACCTTTTGCCCTGTCTGCAAACGGGATGCAAGAACTAGCACTGGTGATCCACCAGCATCAGAATCTACACCATTGCTTTCTTCCAGTCTGCGATCTGTATCTTCAGTGTCATCTCTGAGGTCATCATTAGCATCATCAGAAGTGATACATATAGGCACAGGAGCATCTCGATCACCTTCAGTTT</genome_strand>
        <mrna_strand>TAATCCCAAGCTTGGAAAACTCAGCTTGGTCAATCATGGCTACATCTTTCATTTCACTACTTTCTATGTCTGCTGTACTTGCAATGTGTTTCTTTGTTCGCCGACATCATATACGAAGAGAACGGCCACGAGCTTCTCGTGTTCGCGAATTTCATGGGATTAGTAGCCGTTTGGATAAAGCTATGCCAAGTTCGATATTTACGTCAGTTGTGGAGGATAATTCTACATCAGTGACATGTGCTATATGCCTTGAAGATTATACTGCTGGAGATAAGCTTAGAATTCTTCCATGCCGGCACA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTTCACACTATGTGTGTTGATGCTTGGCTGACATCATGGAGAACCTTTTGCCCTGTCTGCAAACGGGATGCAAGAACTAGCACTGGTGATCCACCAGCATCAGAATCTACACCATTGCTTTCTTCCAGTCTGCGATCTGTATCTTCAGTGACATCTCTGAGGTCATCATTAGCATCATCAGAAGTGATACATATAGGCACAGGAGCATCTCGATCACCTTCAGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E275611" ref_strand="+" ref_description="SGN-E275611 [cLEN-10-J14]">
      <seq>tcatggctacatctttcatttcactactttctatgtctgctgtacttgcaatgtgtttctttgttcgccgacatcatatacgaagagaacggccacgagcttctcgtgttcgcgaatttcatgggattagtagccgtttggttaaagctatgccaagtttgatatttacgtcagttgtggaggataattctacatcagtgacatgtgctatatgccttgaagattatactgctggagataagcttagaattcttccatgccggcacaaatttcacactatgtgtgttgatgcttggctgacatcatggagaaccttttgccctgtctgcaaacgggatgcaagaactagcactggtgatccaccagcatcagaatctacaccattgctttcttccagtctgcgatctgtatcttcagtgtcatctctgaggtcatcattagcatcatcagaagtgatacatataggcacaggagcatctcgatcaccttcagtttctcgtcctcaatctatctctagctctcgtaaccagcattcactttggtcttaccagtcaccacatcttgctataagccggagttcactggaccttcaaaatgcatcttctcaaagatctcgtgcagcttacttaatttcatccaactcattgggttatccttgtttatcacctcttaattcaagatatgggtctgcatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0132E21.2" temp_strand="+" temp_description="C06SLm0132E21.2  AC211087.2 htgs_phase:3 submitted_to_sgn_as:C06SLm0132E21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11593" stop="13956"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11893" g_stop="12159" g_length="267"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="267" r_length="267" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12160" i_stop="13228" i_length="1069">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.226" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13229" g_stop="13656" g_length="428"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="695" r_length="428" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0132E21.2" gen_strand="+" ref_id="SGN-E275611" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>695</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0132E21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E275611" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11893" e_stop="12159"/>
          <exon e_start="13229" e_stop="13656"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATGGCTACATCTTTCATTTCACTACTTTCTATGTCTGCTGTACTTGCAATGTGTTTCTTTGTTCGCCGACATCATATACGAAGAGAACGGCCACGAGCTTCTCGTGTTCGCGAATTTCATGGGATTAGTAGCCGTTTGGTTAAAGCTATGCCAAGTTTGATATTTACGTCAGTTGTGGAGGATAATTCTACATCAGTGACATGTGCTATATGCCTTGAAGATTATACTGCTGGAGATAAGCTTAGAATTCTTCCATGCCGGCACAGTAAGTTATCCTCATTCTCTCTTTGATTTTTGGTACCATGCCAGACTAATCAGTGATCATGGTTGATAAGCACTAATGTATCCCCTTTAAACATGAAACAATTTTAGTGTCACCACTAAGGAAACTTGACTTGTCTCCCACCAAAAGCTTATGGTAGTTTGACCTTACTGAAAATGCACCCAGCACCATCACTTCTTGCCACCCCACCTCTGTGGGTTCCTACTGGTGAGTGTGGTATTCTGTTTGTAAGGCGTTTCCATCAGCCTTTGCAATTCATCCATCTCTCAATCTTGTAAATTCCAGACAATAAATTCCCCCCTTTCGCGTCACCCTAATCTGTTGTACCATCGCCTCTTTCTAGCATGAAACTCTGAATAACTTGGGAGAGGTTGTCCTCCTATACTTCTATGCACCTATGTTGGTCCCAAAAGTTGACTCTACTTCCATTCCCTACTTCATAGGTAACTAAGCCATTGAAATCTAGCTAACCTTTGATAATGCTTTTCTAGACCTCCATTTCCCTTCTACGACTCCATGTTTTCGTGCTATACCTCCCTCCACAATGCGTGCTCTTCAACCCCAAATCTCCATAACTACTTCCCAGTAGTGCCTTGTTCAAAACTCTTAAGTTCTGTTGTTCCAGGGATATGAGGAAGATTCCAACTACTAATTCTTGGTCTCCGTTTACCGAGTCCCCCAAGCCTGTCATCATAGTTGTTTAGCTCCAACTTTGTATCATGATGTAGAGAAGATCATTCATCGCTGTATGCATATTCTTCTACCATCTTGACTTTTGCCCTTTCTAAAGTAGCAGAACAGTTATAAATACAGTTCATACCTGATTTTTGAAATTATTTCATTTTCTGAAGTCTCCTTGGGGGTGAACTATGTGAAAACTAGAATTTATGGTTCCAAGTATCATATTATTGGAATATTTCCCTTGTCCCCAGTTGCTCTAATGCTGTATTTGTTGATACATTTCATAGATGTATGTGCACATTCAGAATTTATTTCTGCTGGAGCACTTGGCCTTTTTCAGTTATTAACTTGTCTTATGGGAACTTCACAGAATTTCACACTATGTGTGTTGATGCTTGGCTGACATCATGGAGAACCTTTTGCCCTGTCTGCAAACGGGATGCAAGAACTAGCACTGGTGATCCACCAGCATCAGAATCTACACCATTGCTTTCTTCCAGTCTGCGATCTGTATCTTCAGTGTCATCTCTGAGGTCATCATTAGCATCATCAGAAGTGATACATATAGGCACAGGAGCATCTCGATCACCTTCAGTTTCTCGTCCTCAATCTATCTCTAGCTCTCGTAACCAGCATTCACTTTGGTCTTACCAGTCACCACATCTTGCTATAAGCCGGAGTTCACTGGACCTTCAAAATGCATCTTCTCAAAGATCTCGTGCAGCTTACTTAATTTCATCCAACTCATTGGGTTATCCTTGTTTATCACCTCTTAATTCAAGATATGGGTCTGCATAC</genome_strand>
        <mrna_strand>TCATGGCTACATCTTTCATTTCACTACTTTCTATGTCTGCTGTACTTGCAATGTGTTTCTTTGTTCGCCGACATCATATACGAAGAGAACGGCCACGAGCTTCTCGTGTTCGCGAATTTCATGGGATTAGTAGCCGTTTGGTTAAAGCTATGCCAAGTTTGATATTTACGTCAGTTGTGGAGGATAATTCTACATCAGTGACATGTGCTATATGCCTTGAAGATTATACTGCTGGAGATAAGCTTAGAATTCTTCCATGCCGGCACA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTTCACACTATGTGTGTTGATGCTTGGCTGACATCATGGAGAACCTTTTGCCCTGTCTGCAAACGGGATGCAAGAACTAGCACTGGTGATCCACCAGCATCAGAATCTACACCATTGCTTTCTTCCAGTCTGCGATCTGTATCTTCAGTGTCATCTCTGAGGTCATCATTAGCATCATCAGAAGTGATACATATAGGCACAGGAGCATCTCGATCACCTTCAGTTTCTCGTCCTCAATCTATCTCTAGCTCTCGTAACCAGCATTCACTTTGGTCTTACCAGTCACCACATCTTGCTATAAGCCGGAGTTCACTGGACCTTCAAAATGCATCTTCTCAAAGATCTCGTGCAGCTTACTTAATTTCATCCAACTCATTGGGTTATCCTTGTTTATCACCTCTTAATTCAAGATATGGGTCTGCATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E376879" ref_strand="+" ref_description="SGN-E376879 [TUS-19-F9](-)">
      <seq>taatttcatccaactcattgggttatccttgtttatcacctcttaattcaagatatgggtctgcatacattcctagtcctagcaatccctcgtcgagctatatgggatcaacaagtcggcagcctaacccactgcatcacagtgaatcaattacaagcttttcaccatttgcttcagctaactctcttcctggatgtgagtcgtgatttaattgatcatggcaaacattaatcaaattgttgaagtcccttgcagggaactcaggttgggttattctgacctcaaattcacgtgaagacaatagagctgattcgtgttggttgctttgacatctggacggaggaatacaacagctagcttcattgctcaacacttctgggatattggtttagtagttgataggtttgataattttgagttttttacagagtgtacattcttaaagatgggtgtattactgtacgcattgcgccttcttttgtttattgctttttttttcttcttaccctcgatttctctataatagtgatgtttttagccatgtccacctgacagatggttgaggcctgtagtttgcatgtaaatatgaatgcccttgaggtgactaaatctagtcttttacttgttttagtttttgaatatccactgatttccaaataaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0132E21.2" temp_strand="+" temp_description="C06SLm0132E21.2  AC211087.2 htgs_phase:3 submitted_to_sgn_as:C06SLm0132E21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="13289" stop="14548"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13589" g_stop="14258" g_length="670"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="669" r_length="669" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0132E21.2" gen_strand="+" ref_id="SGN-E376879" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>670</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0132E21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E376879" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13589" e_stop="14258"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATTTCATCCAACTCATTGGGTTATCCTTGTTTATCACCTCTTAATTCAAGATATGGGTCTGCATACATTCCTAGTCCTAGCAATCCCTCGTCGAGCTATATGGGATCAACAAGTCGGCAGCCTAACCCACTGCATCACAGTGAATCAATTACAAGCTTTTCACCATTTGCTTCAGCTAACTCTCTTCCTGGATGTGAGTCGTGATTTAATTGATCATGGCAAACATTAATCAAATTGTTGAAGTCCCTTGCAGGGAACTCAGGTTGGGTTATTCTGACCTCAAATTCACGTGAAGACAATAGAGCTGATTCGTGTTGGTTGCTTTGACATCTGGACGGAGGAATACAACAGCTAGCTTCATTGCTCAACACTTCTGGGATATTGGTTTAGTAGTTGATAGGTTTGATAATTTTGAGTTTTTTACAGAGTGTACATTCTTAAAGATGGGTGTATTACTGTACGCATTGCGCCTTCTTTTGTTTATTGCTTTTTTTTTTCTTCTTACCCTCGATTTCTCTATAATAGTGATGTTTTTAGCCATGTCCACCTGACAGATGGTTGAGGCCTGTAGTTTGCATGTAAATATGAATGCCCTTGAGGTGACTAAATCTAGTCTTTTACTTGTTTTAGTTTTTGAATATCCACTGATTTCCAAATATTGCATATCT</genome_strand>
        <mrna_strand>TAATTTCATCCAACTCATTGGGTTATCCTTGTTTATCACCTCTTAATTCAAGATATGGGTCTGCATACATTCCTAGTCCTAGCAATCCCTCGTCGAGCTATATGGGATCAACAAGTCGGCAGCCTAACCCACTGCATCACAGTGAATCAATTACAAGCTTTTCACCATTTGCTTCAGCTAACTCTCTTCCTGGATGTGAGTCGTGATTTAATTGATCATGGCAAACATTAATCAAATTGTTGAAGTCCCTTGCAGGGAACTCAGGTTGGGTTATTCTGACCTCAAATTCACGTGAAGACAATAGAGCTGATTCGTGTTGGTTGCTTTGACATCTGGACGGAGGAATACAACAGCTAGCTTCATTGCTCAACACTTCTGGGATATTGGTTTAGTAGTTGATAGGTTTGATAATTTTGAGTTTTTTACAGAGTGTACATTCTTAAAGATGGGTGTATTACTGTACGCATTGCGCCTTCTTTTGTTTATTGC-TTTTTTTTTCTTCTTACCCTCGATTTCTCTATAATAGTGATGTTTTTAGCCATGTCCACCTGACAGATGGTTGAGGCCTGTAGTTTGCATGTAAATATGAATGCCCTTGAGGTGACTAAATCTAGTCTTTTACTTGTTTTAGTTTTTGAATATCCACTGATTTCCAAATAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E390934" ref_strand="+" ref_description="SGN-E390934 [TUS-46-H6](-)">
      <seq>gaatcattgacggtttctaagaaaactaagctgccaaaaatggttgtttgggatggcgatgaggagtacttttcagttgttggctctgagagcgttgaagatgaagatcaggggtcccaaattacacattttattcaaggatacaaagacggaaatatcatacagaaacgtattagctctggttctttcatgggtttcataaactcaatgataggtttgggaacagtgaccatcatagtgtttgtggttgcggtggtgatgattatccagtctttgaaagaggaacccttaactgttggtacaagggacgagggagatcatccaagcagctccacctttcagacagaagccagacaaccacttcgttttggagagaaacaagacaaggaagattaagttttacaccagtcagacctcagatagttagcttgagaaatcctcgacaggaaaaccaaactacacgtaggtttaagagtgctgttaagtttcatcctcacaacgatcacagcccttgtttttttattaaagttatttgaacaacatactgtaggattactgtaaccagaagtgtggagggaagagtttgtgcttctatctgtgttattgaatttaacaaatgtggaggcaaatttaattttagcactgtataaaatgtgtttgaaacaatcttttttagctaatatcactgcttgtttgatgattaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0132E21.2" temp_strand="-" temp_description="C06SLm0132E21.2  AC211087.2 htgs_phase:3 submitted_to_sgn_as:C06SLm0132E21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="15874" stop="14109"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15574" g_stop="15500" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15499" i_stop="15043" i_length="457">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15042" g_stop="14415" g_length="628"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="703" r_length="628" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="704" polyA_stop="722"/>
      <MATCH_line gen_id="C06SLm0132E21.2" gen_strand="-" ref_id="SGN-E390934" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>703</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0132E21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E390934" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15574" e_stop="15500"/>
          <exon e_start="15042" e_stop="14415"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCATTTGACGTTTCTAAGAAAACTAAGCTGCCAAAAATGGTTGTTTGGGATGGCGATGAGGAGTACTTTTCAGTAAGTTCATTTACTTCTTTTTCTCTCCCTTTCCAGTTCCCCGCTAGGGATTGCATATTTGTCGACCCTTATCAAGTGTAGGAAATATACTTTATAGTTTGGAGTCTGGACTTTTTTCTTGTCTAACACGGCTAAAATATAGTGCTTTCAACTTATCGACTGAAGTGAACGATGAACTTTTCATTTTTGCTTAGTGTTCTGACTAAAATAAACAGCAGGGATAAACTGTACTTAACCGTACTTATTAATTGGTATCATTTCACTGCATGACACTTAATTATGTTGTTTCTCCAAGTCTGTGAGATGCCTTTTGTGAATAATATCTACCAGTAATTTTCAGTGGTTTATTAGAAGAGAGAGACATTATTTATACATAATCTACTTCTAGGTGAAGTGTCTTTTGACTAAATCACTATAAATTTAACGTAATGATTACAATTTTTTACTCATGCAACAGGTTGTTGGCTCTGAGAGCGTTGAAGATGAAGATCAGGGGTCCCAAATTACACATTTTATTCAAGGATACAAAGACGGAAATATCATACAGAAACGTATTAGCTCTGGTTCTTTCATGGGTTTCATAAACTCAATGATAGGTTTGGGAACAGTGACCATCATAGTGTTTGTGGTTGCGGTGGTGATGATTATCCAGTCTTTGAAAGAGGAACCCTTAACTGTTGGTACAAGGGACGAGGGAGATCATCCAAGCAGCTCCACCTCTCAGACAGAAGCCAGACAACCACTTCGTTCTGGAGAGAAACAAGACAAGGAAGATTAAGTTTTACACCAGTCAGACCTCAGATAGTTAGCTTGAGAAATCCTCGACAGGAAAACCAAACTACACGTAGGTCTAAGAGTGCTGTTAAGTTTCATCCTCACAACGATCACAGCCCTTGTTTTCTTATTAAAGTTATTTGAACAACATACTGTAGGATTACTGTAACCAGAAGTGTGGAGGGAAGAGTTTGTGCTTCTATCTGTGTTATTGAATTTAACAAATGTGGAGGCAAATTTAATTTTAGCACTGTATAAAATGTGTTTGAAACAATCTTTTTTAGCTAATATCACTGCTTGTTTGATGATTA</genome_strand>
        <mrna_strand>GAATCATTGACGGTTTCTAAGAAAACTAAGCTGCCAAAAATGGTTGTTTGGGATGGCGATGAGGAGTACTTTTCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTGGCTCTGAGAGCGTTGAAGATGAAGATCAGGGGTCCCAAATTACACATTTTATTCAAGGATACAAAGACGGAAATATCATACAGAAACGTATTAGCTCTGGTTCTTTCATGGGTTTCATAAACTCAATGATAGGTTTGGGAACAGTGACCATCATAGTGTTTGTGGTTGCGGTGGTGATGATTATCCAGTCTTTGAAAGAGGAACCCTTAACTGTTGGTACAAGGGACGAGGGAGATCATCCAAGCAGCTCCACCTTTCAGACAGAAGCCAGACAACCACTTCGTTTTGGAGAGAAACAAGACAAGGAAGATTAAGTTTTACACCAGTCAGACCTCAGATAGTTAGCTTGAGAAATCCTCGACAGGAAAACCAAACTACACGTAGGTTTAAGAGTGCTGTTAAGTTTCATCCTCACAACGATCACAGCCCTTGTTTTTTTATTAAAGTTATTTGAACAACATACTGTAGGATTACTGTAACCAGAAGTGTGGAGGGAAGAGTTTGTGCTTCTATCTGTGTTATTGAATTTAACAAATGTGGAGGCAAATTTAATTTTAGCACTGTATAAAATGTGTTTGAAACAATCTTTTTTAGCTAATATCACTGCTTGTTTGATGATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E373997" ref_strand="+" ref_description="SGN-E373997 [TUS-33-A9](-)">
      <seq>agtacttttcagttgttggctctgagagcgttgaagatgaagatcaggggtcccaaattacacattttattcaaggatacaaagacggaaatatcatacagaaacgtattagctctggttctttcatgggtttcataaactcaatgataggtttgggaacagtgaccatcatagtgtttgtggttgcggtggtgatgattatccagtctttgaaagaggaacccttaactgttggtacaagggacgagggagatcatccaagcagctccacctctcagacagaagccagacaaccacttcgttctggagagaaacaagacaaggaagattaagttttacaccagtcagacctcagatagttagcttgagaaatcctcgacaggaaaaccaaactacacgtaggtctaagagtgctgttaagtttcatcctcacaacgatcacagcccttgttttcttattaaagttatttgaacaacatactgtaggattactgtaaccaaaagtgtggagggaagagtttgtgcttctatttgtgttattgaatttaacaaatgtggaggcaaatttaattttagcactgtataaaatgtgtttgaaacaatcttttttagctaatatcactgcttgtttgataaataaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0132E21.2" temp_strand="-" temp_description="C06SLm0132E21.2  AC211087.2 htgs_phase:3 submitted_to_sgn_as:C06SLm0132E21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="15345" stop="14109"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15042" g_stop="14415" g_length="628"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="639" r_length="628" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="640" polyA_stop="657"/>
      <MATCH_line gen_id="C06SLm0132E21.2" gen_strand="-" ref_id="SGN-E373997" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>628</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0132E21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E373997" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15042" e_stop="14415"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGTTGGCTCTGAGAGCGTTGAAGATGAAGATCAGGGGTCCCAAATTACACATTTTATTCAAGGATACAAAGACGGAAATATCATACAGAAACGTATTAGCTCTGGTTCTTTCATGGGTTTCATAAACTCAATGATAGGTTTGGGAACAGTGACCATCATAGTGTTTGTGGTTGCGGTGGTGATGATTATCCAGTCTTTGAAAGAGGAACCCTTAACTGTTGGTACAAGGGACGAGGGAGATCATCCAAGCAGCTCCACCTCTCAGACAGAAGCCAGACAACCACTTCGTTCTGGAGAGAAACAAGACAAGGAAGATTAAGTTTTACACCAGTCAGACCTCAGATAGTTAGCTTGAGAAATCCTCGACAGGAAAACCAAACTACACGTAGGTCTAAGAGTGCTGTTAAGTTTCATCCTCACAACGATCACAGCCCTTGTTTTCTTATTAAAGTTATTTGAACAACATACTGTAGGATTACTGTAACCAGAAGTGTGGAGGGAAGAGTTTGTGCTTCTATCTGTGTTATTGAATTTAACAAATGTGGAGGCAAATTTAATTTTAGCACTGTATAAAATGTGTTTGAAACAATCTTTTTTAGCTAATATCACTGCTTGTTTGATGATTA</genome_strand>
        <mrna_strand>GTTGTTGGCTCTGAGAGCGTTGAAGATGAAGATCAGGGGTCCCAAATTACACATTTTATTCAAGGATACAAAGACGGAAATATCATACAGAAACGTATTAGCTCTGGTTCTTTCATGGGTTTCATAAACTCAATGATAGGTTTGGGAACAGTGACCATCATAGTGTTTGTGGTTGCGGTGGTGATGATTATCCAGTCTTTGAAAGAGGAACCCTTAACTGTTGGTACAAGGGACGAGGGAGATCATCCAAGCAGCTCCACCTCTCAGACAGAAGCCAGACAACCACTTCGTTCTGGAGAGAAACAAGACAAGGAAGATTAAGTTTTACACCAGTCAGACCTCAGATAGTTAGCTTGAGAAATCCTCGACAGGAAAACCAAACTACACGTAGGTCTAAGAGTGCTGTTAAGTTTCATCCTCACAACGATCACAGCCCTTGTTTTCTTATTAAAGTTATTTGAACAACATACTGTAGGATTACTGTAACCAAAAGTGTGGAGGGAAGAGTTTGTGCTTCTATTTGTGTTATTGAATTTAACAAATGTGGAGGCAAATTTAATTTTAGCACTGTATAAAATGTGTTTGAAACAATCTTTTTTAGCTAATATCACTGCTTGTTTGATAAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E263743" ref_strand="-" ref_description="SGN-E263743 [cLEG-60-H1]">
      <seq>cagggttcccaaattacactttttattcagggatccaaggccggaaatatcatccagaaccgtattagttctggttctttcaggggtttcataaactcaatgataggtttgggaccagtgcccatcatagtgtttgtggttgcggtggtaatgattatccattcttggaaagaggaccccttacctgttggtccaagggaggagggagttcttccaagcagctccccttctcagacagaagccagacaaccatttcgttttggagagaaccaagccaaggaagattaagttttcccccagtcagccttcagatagttagcttgagaaatcctcgccaggaaaaccaaactacacgtaggtctaagagtgctgttaagtttcatcctcacaacgatcacagcccttgttttcttattaaagttatttgaacaacatactgtaggattactgtaaccagaagtgtggagggaagagtttgtgcttctatctgtgttattgaatttaacaaatgtggaggcaaatttaattttagcactgtataaaatgtgtttgaaacaaaaaaaaaaaaaaaaaaccgagactgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0132E21.2" temp_strand="-" temp_description="C06SLm0132E21.2  AC211087.2 htgs_phase:3 submitted_to_sgn_as:C06SLm0132E21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="15309" stop="14152"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15009" g_stop="14453" g_length="557"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="557" r_length="557" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="558" polyA_stop="575"/>
      <MATCH_line gen_id="C06SLm0132E21.2" gen_strand="-" ref_id="SGN-E263743" ref_strand="-">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="0.952" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0132E21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E263743" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="15009" e_stop="14453"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGGGTCCCAAATTACACATTTTATTCAAGGATACAAAGACGGAAATATCATACAGAAACGTATTAGCTCTGGTTCTTTCATGGGTTTCATAAACTCAATGATAGGTTTGGGAACAGTGACCATCATAGTGTTTGTGGTTGCGGTGGTGATGATTATCCAGTCTTTGAAAGAGGAACCCTTAACTGTTGGTACAAGGGACGAGGGAGATCATCCAAGCAGCTCCACCTCTCAGACAGAAGCCAGACAACCACTTCGTTCTGGAGAGAAACAAGACAAGGAAGATTAAGTTTTACACCAGTCAGACCTCAGATAGTTAGCTTGAGAAATCCTCGACAGGAAAACCAAACTACACGTAGGTCTAAGAGTGCTGTTAAGTTTCATCCTCACAACGATCACAGCCCTTGTTTTCTTATTAAAGTTATTTGAACAACATACTGTAGGATTACTGTAACCAGAAGTGTGGAGGGAAGAGTTTGTGCTTCTATCTGTGTTATTGAATTTAACAAATGTGGAGGCAAATTTAATTTTAGCACTGTATAAAATGTGTTTGAAACA</genome_strand>
        <mrna_strand>CAGGGTTCCCAAATTACACTTTTTATTCAGGGATCCAAGGCCGGAAATATCATCCAGAACCGTATTAGTTCTGGTTCTTTCAGGGGTTTCATAAACTCAATGATAGGTTTGGGACCAGTGCCCATCATAGTGTTTGTGGTTGCGGTGGTAATGATTATCCATTCTTGGAAAGAGGACCCCTTACCTGTTGGTCCAAGGGAGGAGGGAGTTCTTCCAAGCAGCTCCCCTTCTCAGACAGAAGCCAGACAACCATTTCGTTTTGGAGAGAACCAAGCCAAGGAAGATTAAGTTTTCCCCCAGTCAGCCTTCAGATAGTTAGCTTGAGAAATCCTCGCCAGGAAAACCAAACTACACGTAGGTCTAAGAGTGCTGTTAAGTTTCATCCTCACAACGATCACAGCCCTTGTTTTCTTATTAAAGTTATTTGAACAACATACTGTAGGATTACTGTAACCAGAAGTGTGGAGGGAAGAGTTTGTGCTTCTATCTGTGTTATTGAATTTAACAAATGTGGAGGCAAATTTAATTTTAGCACTGTATAAAATGTGTTTGAAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E262080" ref_strand="-" ref_description="SGN-E262080 [cLEG-58-E21]">
      <seq>agggagatcatccaagcagctccccttctcagacagaagccagacaaccacttcgttctggagagaaccaagacaaggaagattaagttttacaccagtcagacctcagatagttagcttgagaaatcctcgacaggaaaaccaaactacacgtaggtctaagagtgctgttaagtttcatcctcacaacgatcacagcccttgttttcttattaaagttatttgaacaacatactgtaggattactgtaaccagaagtgtggagggaagagtttgtgcttctatctgtgttattgaatttaacaaatgtggaggcaaatttaattttagcactgtataaaatgtgtttgaaacaaaaaaaaaaaaaaaaanccgagact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0132E21.2" temp_strand="-" temp_description="C06SLm0132E21.2  AC211087.2 htgs_phase:3 submitted_to_sgn_as:C06SLm0132E21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="15107" stop="14152"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14807" g_stop="14453" g_length="355"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="355" r_length="355" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="356" polyA_stop="372"/>
      <MATCH_line gen_id="C06SLm0132E21.2" gen_strand="-" ref_id="SGN-E262080" ref_strand="-">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>355</cumulative_length_of_scored_exons>
        <coverage percentage="0.934" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0132E21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E262080" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="14807" e_stop="14453"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGGAGATCATCCAAGCAGCTCCACCTCTCAGACAGAAGCCAGACAACCACTTCGTTCTGGAGAGAAACAAGACAAGGAAGATTAAGTTTTACACCAGTCAGACCTCAGATAGTTAGCTTGAGAAATCCTCGACAGGAAAACCAAACTACACGTAGGTCTAAGAGTGCTGTTAAGTTTCATCCTCACAACGATCACAGCCCTTGTTTTCTTATTAAAGTTATTTGAACAACATACTGTAGGATTACTGTAACCAGAAGTGTGGAGGGAAGAGTTTGTGCTTCTATCTGTGTTATTGAATTTAACAAATGTGGAGGCAAATTTAATTTTAGCACTGTATAAAATGTGTTTGAAACA</genome_strand>
        <mrna_strand>AGGGAGATCATCCAAGCAGCTCCCCTTCTCAGACAGAAGCCAGACAACCACTTCGTTCTGGAGAGAACCAAGACAAGGAAGATTAAGTTTTACACCAGTCAGACCTCAGATAGTTAGCTTGAGAAATCCTCGACAGGAAAACCAAACTACACGTAGGTCTAAGAGTGCTGTTAAGTTTCATCCTCACAACGATCACAGCCCTTGTTTTCTTATTAAAGTTATTTGAACAACATACTGTAGGATTACTGTAACCAGAAGTGTGGAGGGAAGAGTTTGTGCTTCTATCTGTGTTATTGAATTTAACAAATGTGGAGGCAAATTTAATTTTAGCACTGTATAAAATGTGTTTGAAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E226125" ref_strand="+" ref_description="SGN-E226125 [cLEL-31-G5](-)">
      <seq>tcccaaattacacattttattcaaggatacaaagacggaaatatcaatacagaaacgtattagctctggttctttcatgggtttcataaactcaatgataggtttgggaacagtgaccatcatagtgtttgtggttgcggtggtgatgattatccagtctttgaaagaggaacccttaactgttggtacaagggacgagggagatcatccaagcagctccacctctcagacagaagccagacaaccacttcgttctggagagaaacaagacaaggaagattaagttttacaccagtcagacctcagatagttagcttgagaaatcctcgacaggaaaaccaaactacacgtaggtctaagagtgctgttaagtttcatcctcacaacgatcacagcccttgttttcttattaaagttatttgaacaacatactgtaggattactgtaaccagaagtgtggagggaagagtttgtgcttctatctgtgttattaaatttaacaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0132E21.2" temp_strand="-" temp_description="C06SLm0132E21.2  AC211087.2 htgs_phase:3 submitted_to_sgn_as:C06SLm0132E21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="15303" stop="14201"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15003" g_stop="14497" g_length="507"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="508" r_length="508" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0132E21.2" gen_strand="-" ref_id="SGN-E226125" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0132E21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E226125" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15003" e_stop="14497"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCCAAATTACACATTTTATTCAAGGATACAAAGACGGAAATATC-ATACAGAAACGTATTAGCTCTGGTTCTTTCATGGGTTTCATAAACTCAATGATAGGTTTGGGAACAGTGACCATCATAGTGTTTGTGGTTGCGGTGGTGATGATTATCCAGTCTTTGAAAGAGGAACCCTTAACTGTTGGTACAAGGGACGAGGGAGATCATCCAAGCAGCTCCACCTCTCAGACAGAAGCCAGACAACCACTTCGTTCTGGAGAGAAACAAGACAAGGAAGATTAAGTTTTACACCAGTCAGACCTCAGATAGTTAGCTTGAGAAATCCTCGACAGGAAAACCAAACTACACGTAGGTCTAAGAGTGCTGTTAAGTTTCATCCTCACAACGATCACAGCCCTTGTTTTCTTATTAAAGTTATTTGAACAACATACTGTAGGATTACTGTAACCAGAAGTGTGGAGGGAAGAGTTTGTGCTTCTATCTGTGTTATTGAATTTAACAAATGTG</genome_strand>
        <mrna_strand>TCCCAAATTACACATTTTATTCAAGGATACAAAGACGGAAATATCAATACAGAAACGTATTAGCTCTGGTTCTTTCATGGGTTTCATAAACTCAATGATAGGTTTGGGAACAGTGACCATCATAGTGTTTGTGGTTGCGGTGGTGATGATTATCCAGTCTTTGAAAGAGGAACCCTTAACTGTTGGTACAAGGGACGAGGGAGATCATCCAAGCAGCTCCACCTCTCAGACAGAAGCCAGACAACCACTTCGTTCTGGAGAGAAACAAGACAAGGAAGATTAAGTTTTACACCAGTCAGACCTCAGATAGTTAGCTTGAGAAATCCTCGACAGGAAAACCAAACTACACGTAGGTCTAAGAGTGCTGTTAAGTTTCATCCTCACAACGATCACAGCCCTTGTTTTCTTATTAAAGTTATTTGAACAACATACTGTAGGATTACTGTAACCAGAAGTGTGGAGGGAAGAGTTTGTGCTTCTATCTGTGTTATTAAATTTAACAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E226029" ref_strand="+" ref_description="SGN-E226029 [cLEL-31-G5](-)">
      <seq>gtgtttgtggttgcggtggtgatgattatccagtctttgaaaaaggaacccttaactgttggtacaagggacgagggagatcatccaagcagctccacctctcagacagaagccagacaaccacttcgttctggagagaaacaagacaaggaagattaagttttacaccagtcagacctcagatagttagcttgagaaatcctcgacaggaaaaccaaactacacgtaggtctaagagtgctgttaagtttcatcctcacaacgatcacagcccttgttttcttattaaagttatttgaacaacatactgtaggattactgtaaccagaagtgtggagggaagagtttgtgcttctatctgtgttattgaatttaacaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0132E21.2" temp_strand="-" temp_description="C06SLm0132E21.2  AC211087.2 htgs_phase:3 submitted_to_sgn_as:C06SLm0132E21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="15180" stop="14201"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14880" g_stop="14497" g_length="384"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="384" r_length="384" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0132E21.2" gen_strand="-" ref_id="SGN-E226029" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>384</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0132E21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E226029" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14880" e_stop="14497"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGTTTGTGGTTGCGGTGGTGATGATTATCCAGTCTTTGAAAGAGGAACCCTTAACTGTTGGTACAAGGGACGAGGGAGATCATCCAAGCAGCTCCACCTCTCAGACAGAAGCCAGACAACCACTTCGTTCTGGAGAGAAACAAGACAAGGAAGATTAAGTTTTACACCAGTCAGACCTCAGATAGTTAGCTTGAGAAATCCTCGACAGGAAAACCAAACTACACGTAGGTCTAAGAGTGCTGTTAAGTTTCATCCTCACAACGATCACAGCCCTTGTTTTCTTATTAAAGTTATTTGAACAACATACTGTAGGATTACTGTAACCAGAAGTGTGGAGGGAAGAGTTTGTGCTTCTATCTGTGTTATTGAATTTAACAAATGTG</genome_strand>
        <mrna_strand>GTGTTTGTGGTTGCGGTGGTGATGATTATCCAGTCTTTGAAAAAGGAACCCTTAACTGTTGGTACAAGGGACGAGGGAGATCATCCAAGCAGCTCCACCTCTCAGACAGAAGCCAGACAACCACTTCGTTCTGGAGAGAAACAAGACAAGGAAGATTAAGTTTTACACCAGTCAGACCTCAGATAGTTAGCTTGAGAAATCCTCGACAGGAAAACCAAACTACACGTAGGTCTAAGAGTGCTGTTAAGTTTCATCCTCACAACGATCACAGCCCTTGTTTTCTTATTAAAGTTATTTGAACAACATACTGTAGGATTACTGTAACCAGAAGTGTGGAGGGAAGAGTTTGTGCTTCTATCTGTGTTATTGAATTTAACAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E377791" ref_strand="+" ref_description="SGN-E377791 [TUS-21-N7]">
      <seq>aaactctgagattgctgaaagatgatgagagaaaagttattctaacaattttggaagatgaaactgatgataggtctaagaaattattgaagctcctgaaagctgctgcatctgcaaaccgcgacttcgtgtttgtttttgttgggttcaagcaatggcaagggtttgctgaatcatttgacgtttctaagaaaactaagctgccaaaaatggttgtttgggatggcgatgaggagtacttttcagttgttggctctgagagcgttgaagatgaagatcaggggtcccaaattacacattttattcaaggatacaaagacggaaatatcatacagaaacgtattagctctggttctttcatgggtttcataaactcaatgataggtttgggaacagtgaccatcatagtgtttgtggttgcggtggtgatgattatccagtctttgaaagaggaacccttaactgttggtacaagggacgagggagatcatccaagcagctccacctctcagacagaagccagacaaccacttcgttctggagagaaacaagacaaggaagattaagttttacaccagtcagacctcagatagttagcttgagaaatcctcgacaggaaaaccaaactacacgtaggtctaagagtgctgttaagtttcatcctcacaacgatcacagccccttgttttcttattaaagttatttgaacaacatactgtagga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0132E21.2" temp_strand="-" temp_description="C06SLm0132E21.2  AC211087.2 htgs_phase:3 submitted_to_sgn_as:C06SLm0132E21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="16044" stop="14266"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15744" g_stop="15500" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="245" r_length="245" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15499" i_stop="15043" i_length="457">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15042" g_stop="14566" g_length="477"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="723" r_length="478" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0132E21.2" gen_strand="-" ref_id="SGN-E377791" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>722</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0132E21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E377791" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15744" e_stop="15500"/>
          <exon e_start="15042" e_stop="14566"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTCTGAGATTGCTGAAAGATGATGAGAGAAAAGTTATTCTAACAATTTTGGAAGATGAAACTGATGATAGGTCTAAGAAATTATTGAAGCTCCTGAAAGCTGCTGCATCTGCAAACCGCGACTTCGTGTTTGTTTTTGTTGGGTTCAAGCAATGGCAAGGGTTTGCTGAATCATTTGACGTTTCTAAGAAAACTAAGCTGCCAAAAATGGTTGTTTGGGATGGCGATGAGGAGTACTTTTCAGTAAGTTCATTTACTTCTTTTTCTCTCCCTTTCCAGTTCCCCGCTAGGGATTGCATATTTGTCGACCCTTATCAAGTGTAGGAAATATACTTTATAGTTTGGAGTCTGGACTTTTTTCTTGTCTAACACGGCTAAAATATAGTGCTTTCAACTTATCGACTGAAGTGAACGATGAACTTTTCATTTTTGCTTAGTGTTCTGACTAAAATAAACAGCAGGGATAAACTGTACTTAACCGTACTTATTAATTGGTATCATTTCACTGCATGACACTTAATTATGTTGTTTCTCCAAGTCTGTGAGATGCCTTTTGTGAATAATATCTACCAGTAATTTTCAGTGGTTTATTAGAAGAGAGAGACATTATTTATACATAATCTACTTCTAGGTGAAGTGTCTTTTGACTAAATCACTATAAATTTAACGTAATGATTACAATTTTTTACTCATGCAACAGGTTGTTGGCTCTGAGAGCGTTGAAGATGAAGATCAGGGGTCCCAAATTACACATTTTATTCAAGGATACAAAGACGGAAATATCATACAGAAACGTATTAGCTCTGGTTCTTTCATGGGTTTCATAAACTCAATGATAGGTTTGGGAACAGTGACCATCATAGTGTTTGTGGTTGCGGTGGTGATGATTATCCAGTCTTTGAAAGAGGAACCCTTAACTGTTGGTACAAGGGACGAGGGAGATCATCCAAGCAGCTCCACCTCTCAGACAGAAGCCAGACAACCACTTCGTTCTGGAGAGAAACAAGACAAGGAAGATTAAGTTTTACACCAGTCAGACCTCAGATAGTTAGCTTGAGAAATCCTCGACAGGAAAACCAAACTACACGTAGGTCTAAGAGTGCTGTTAAGTTTCATCCTCACAACGATCACAG-CCCTTGTTTTCTTATTAAAGTTATTTGAACAACATACTGTAGGA</genome_strand>
        <mrna_strand>AAACTCTGAGATTGCTGAAAGATGATGAGAGAAAAGTTATTCTAACAATTTTGGAAGATGAAACTGATGATAGGTCTAAGAAATTATTGAAGCTCCTGAAAGCTGCTGCATCTGCAAACCGCGACTTCGTGTTTGTTTTTGTTGGGTTCAAGCAATGGCAAGGGTTTGCTGAATCATTTGACGTTTCTAAGAAAACTAAGCTGCCAAAAATGGTTGTTTGGGATGGCGATGAGGAGTACTTTTCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTGGCTCTGAGAGCGTTGAAGATGAAGATCAGGGGTCCCAAATTACACATTTTATTCAAGGATACAAAGACGGAAATATCATACAGAAACGTATTAGCTCTGGTTCTTTCATGGGTTTCATAAACTCAATGATAGGTTTGGGAACAGTGACCATCATAGTGTTTGTGGTTGCGGTGGTGATGATTATCCAGTCTTTGAAAGAGGAACCCTTAACTGTTGGTACAAGGGACGAGGGAGATCATCCAAGCAGCTCCACCTCTCAGACAGAAGCCAGACAACCACTTCGTTCTGGAGAGAAACAAGACAAGGAAGATTAAGTTTTACACCAGTCAGACCTCAGATAGTTAGCTTGAGAAATCCTCGACAGGAAAACCAAACTACACGTAGGTCTAAGAGTGCTGTTAAGTTTCATCCTCACAACGATCACAGCCCCTTGTTTTCTTATTAAAGTTATTTGAACAACATACTGTAGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E235575" ref_strand="+" ref_description="SGN-E235575 [cLED-11-J22]">
      <seq>aaactctgagattgctgaaagatgatgagagaaaagttattctaacaattttggaagatgaaactgatgataggtctaagaaattattgaagctcctgaaagctgctgcatctgcaaaccgcgacttcgtgtttgtttttgttgggttcaagcaatggcaagggtttgctgaatcatttgacgtttctaagaaaactaagctgccaaaaatggttgtttgggatggcgatgaggagtacttttcagttgttggctctgagagcgttgaagatgaagatcaggggtcccaaattacacattttattcaaggatacaaagacggaaatatcatacagaaacgtattagctctggttctttcatgggtttcataaactcaatgataggtttgggaacagtgaccatcatagtgtttgtggttgcggtggtgatgattatccagtctttgaaagaggaacccttaactgttggtacaagggacgagggagatcatccaagcagctccacctctcagacagaagccagacaaccacttcgttctggagagaaacaagacaaggaagattaagttttacaccagtcagacctcagatagttagcttgagaaatcctcgacaggaaaaccaaactacacgtaggtctaagagtgctgttaagtttcatcctcacaacgatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0132E21.2" temp_strand="-" temp_description="C06SLm0132E21.2  AC211087.2 htgs_phase:3 submitted_to_sgn_as:C06SLm0132E21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="16044" stop="14313"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15744" g_stop="15500" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="245" r_length="245" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15499" i_stop="15043" i_length="457">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15042" g_stop="14613" g_length="430"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="675" r_length="430" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0132E21.2" gen_strand="-" ref_id="SGN-E235575" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>675</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0132E21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E235575" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15744" e_stop="15500"/>
          <exon e_start="15042" e_stop="14613"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTCTGAGATTGCTGAAAGATGATGAGAGAAAAGTTATTCTAACAATTTTGGAAGATGAAACTGATGATAGGTCTAAGAAATTATTGAAGCTCCTGAAAGCTGCTGCATCTGCAAACCGCGACTTCGTGTTTGTTTTTGTTGGGTTCAAGCAATGGCAAGGGTTTGCTGAATCATTTGACGTTTCTAAGAAAACTAAGCTGCCAAAAATGGTTGTTTGGGATGGCGATGAGGAGTACTTTTCAGTAAGTTCATTTACTTCTTTTTCTCTCCCTTTCCAGTTCCCCGCTAGGGATTGCATATTTGTCGACCCTTATCAAGTGTAGGAAATATACTTTATAGTTTGGAGTCTGGACTTTTTTCTTGTCTAACACGGCTAAAATATAGTGCTTTCAACTTATCGACTGAAGTGAACGATGAACTTTTCATTTTTGCTTAGTGTTCTGACTAAAATAAACAGCAGGGATAAACTGTACTTAACCGTACTTATTAATTGGTATCATTTCACTGCATGACACTTAATTATGTTGTTTCTCCAAGTCTGTGAGATGCCTTTTGTGAATAATATCTACCAGTAATTTTCAGTGGTTTATTAGAAGAGAGAGACATTATTTATACATAATCTACTTCTAGGTGAAGTGTCTTTTGACTAAATCACTATAAATTTAACGTAATGATTACAATTTTTTACTCATGCAACAGGTTGTTGGCTCTGAGAGCGTTGAAGATGAAGATCAGGGGTCCCAAATTACACATTTTATTCAAGGATACAAAGACGGAAATATCATACAGAAACGTATTAGCTCTGGTTCTTTCATGGGTTTCATAAACTCAATGATAGGTTTGGGAACAGTGACCATCATAGTGTTTGTGGTTGCGGTGGTGATGATTATCCAGTCTTTGAAAGAGGAACCCTTAACTGTTGGTACAAGGGACGAGGGAGATCATCCAAGCAGCTCCACCTCTCAGACAGAAGCCAGACAACCACTTCGTTCTGGAGAGAAACAAGACAAGGAAGATTAAGTTTTACACCAGTCAGACCTCAGATAGTTAGCTTGAGAAATCCTCGACAGGAAAACCAAACTACACGTAGGTCTAAGAGTGCTGTTAAGTTTCATCCTCACAACGATCA</genome_strand>
        <mrna_strand>AAACTCTGAGATTGCTGAAAGATGATGAGAGAAAAGTTATTCTAACAATTTTGGAAGATGAAACTGATGATAGGTCTAAGAAATTATTGAAGCTCCTGAAAGCTGCTGCATCTGCAAACCGCGACTTCGTGTTTGTTTTTGTTGGGTTCAAGCAATGGCAAGGGTTTGCTGAATCATTTGACGTTTCTAAGAAAACTAAGCTGCCAAAAATGGTTGTTTGGGATGGCGATGAGGAGTACTTTTCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTGGCTCTGAGAGCGTTGAAGATGAAGATCAGGGGTCCCAAATTACACATTTTATTCAAGGATACAAAGACGGAAATATCATACAGAAACGTATTAGCTCTGGTTCTTTCATGGGTTTCATAAACTCAATGATAGGTTTGGGAACAGTGACCATCATAGTGTTTGTGGTTGCGGTGGTGATGATTATCCAGTCTTTGAAAGAGGAACCCTTAACTGTTGGTACAAGGGACGAGGGAGATCATCCAAGCAGCTCCACCTCTCAGACAGAAGCCAGACAACCACTTCGTTCTGGAGAGAAACAAGACAAGGAAGATTAAGTTTTACACCAGTCAGACCTCAGATAGTTAGCTTGAGAAATCCTCGACAGGAAAACCAAACTACACGTAGGTCTAAGAGTGCTGTTAAGTTTCATCCTCACAACGATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E708299" ref_strand="+" ref_description="SGN-E708299 [FA35BE11]">
      <seq>ccattttagagatatttatgcatggtgttccaacagaatattatggaccaagaaaagcagatttacttgtacgattcttgaagaagtttgttgctgctgatgtggccatactcaattctgattcagccattagtgaatttgttgaagcagccggcactagtttccctatatttataggctttggtttgaatgaatctgccatatcacattttgcagtaaaatacaagaagagagcatggttttctgtggcaaaagatttctcggataagaccatggaattctatgattttgacaaggtacctgctttggtagctcgtcatccaaactatgatgaacaaagcatcttctatggcccctttgaagaaaattttgttgaggattatatcaagcagagtttgctcccactgactttgcccattactgaagaaactctgagattgctgaaagatgatgagagaaaagttattctaacaattttggaagatgaaactgatgataggtctaagaaattattgaagctcctgaaagctgctgcatctgcaaaccgcgacttcgtgtttgtttttgttgggttcaagcaatggcaagggtttgctgaatcatttgacgtttctaagaaaactaagctgccaaaaatggttgtttgggatggcgatgaggagtacttttcagttgttggctctgagagcgttgaagatgaagatcaggggtcccaaattacacattttattcaaggatacaaagacggaaatatcatacagaaacgtattagctctggttctttcatgggtttcataaactcaatgataggtttgggaacagtgaccatcatagtgtttgtgggttgcgtggtgatgatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0132E21.2" temp_strand="-" temp_description="C06SLm0132E21.2  AC211087.2 htgs_phase:3 submitted_to_sgn_as:C06SLm0132E21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="17101" stop="14554"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16800" g_stop="16438" g_length="363"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="363" r_length="363" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16437" i_stop="15808" i_length="630">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.490" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15807" g_stop="15500" g_length="308"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="671" r_length="308" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15499" i_stop="15043" i_length="457">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15042" g_stop="14854" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="672" r_stop="860" r_length="189" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0132E21.2" gen_strand="-" ref_id="SGN-E708299" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>860</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0132E21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E708299" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16800" e_stop="16438"/>
          <exon e_start="15807" e_stop="15500"/>
          <exon e_start="15042" e_stop="14854"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACTTTAAAGATATTTATGCATGGTGTTCCAACAGAATATTATGGACCAAGAAAAGCAGATTTACTTGTACGATTCTTGAAGAAGTTTGTTGCTGCTGATGTGGCCATACTCAATTCTGATTCAGCCATTAGTGAATTTGTTGAAGCAGCCGGCACTAGTTTCCCTATATTTATAGGCTTTGGTTTGAATGAATCTGCCATATCACATTTTGCAGTAAAATACAAGAAGAGAGCATGGTTTTCTGTGGCAAAAGATTTCTCGGATAAGACCATGGAATTCTATGATTTTGACAAGGTACCTGCTTTGGTAGCTCGTCATCCAAACTATGATGAACAAAGCATCTTCTATGGCCCCTTTGAAGGTTAGCTTATCATCGCCTGTTATCTTAGGCTTTGGAAGTAATTAAAATCTCACTCACTTTATCAAAAAATTACTCATCTCTTCCTAGAAACTAATAAGAATTAATTATTTTTTTATCGCCTACAAAGGTCCTGAGAAAACCAGAATCTTGTTATATTTAAAGAAGTAACAGTACCACCTGCTCTGTATTTCAAAACTTGCTTTAATTCAATGATTGGCCCTTTATTTGTATTGTGTCACTTAAAAGCAGAAGTCAGCAACTCCAGATTCTGATGTGCTTAAATAATAGGGATCAATCATGAGCTAGTTGTAGTGCTTTCAAAAAGGAAGCATTCAAAAACATCAGTTGACTCTTATGATGAATTCTGATATGGTTTTGATTAGGTGGTTAAGTAATTGATTTGATTGCATGACTATAACCTTATATTATACTTTTCAGTTGATTAAATTGTTTTAGGCTTATTTATGAAAAAAGTTAAATAGCTTTAACTTCCAACCTGCCAACATTTGCTGTATTTTCTGTACTGCATGAAAAAACAAACTGATTTAAGAATTGAGCTGAAGTTGTGTTTTGGGGATTTCTGCGAAATAATGGTGAATATCTGAACCTTCTTCCTGCTATGGATCACAGAAAATTTTGTTGAGGATTATATCAAGCAGAGTTTGCTCCCACTGACTTTGCCCATTACTGAAGAAACTCTGAGATTGCTGAAAGATGATGAGAGAAAAGTTATTCTAACAATTTTGGAAGATGAAACTGATGATAGGTCTAAGAAATTATTGAAGCTCCTGAAAGCTGCTGCATCTGCAAACCGCGACTTCGTGTTTGTTTTTGTTGGGTTCAAGCAATGGCAAGGGTTTGCTGAATCATTTGACGTTTCTAAGAAAACTAAGCTGCCAAAAATGGTTGTTTGGGATGGCGATGAGGAGTACTTTTCAGTAAGTTCATTTACTTCTTTTTCTCTCCCTTTCCAGTTCCCCGCTAGGGATTGCATATTTGTCGACCCTTATCAAGTGTAGGAAATATACTTTATAGTTTGGAGTCTGGACTTTTTTCTTGTCTAACACGGCTAAAATATAGTGCTTTCAACTTATCGACTGAAGTGAACGATGAACTTTTCATTTTTGCTTAGTGTTCTGACTAAAATAAACAGCAGGGATAAACTGTACTTAACCGTACTTATTAATTGGTATCATTTCACTGCATGACACTTAATTATGTTGTTTCTCCAAGTCTGTGAGATGCCTTTTGTGAATAATATCTACCAGTAATTTTCAGTGGTTTATTAGAAGAGAGAGACATTATTTATACATAATCTACTTCTAGGTGAAGTGTCTTTTGACTAAATCACTATAAATTTAACGTAATGATTACAATTTTTTACTCATGCAACAGGTTGTTGGCTCTGAGAGCGTTGAAGATGAAGATCAGGGGTCCCAAATTACACATTTTATTCAAGGATACAAAGACGGAAATATCATACAGAAACGTATTAGCTCTGGTTCTTTCATGGGTTTCATAAACTCAATGATAGGTTTGGGAACAGTGACCATCATAGTGTTTGTGGTTGCGGTGGTGATGATT</genome_strand>
        <mrna_strand>CCATTTTAGAGATATTTATGCATGGTGTTCCAACAGAATATTATGGACCAAGAAAAGCAGATTTACTTGTACGATTCTTGAAGAAGTTTGTTGCTGCTGATGTGGCCATACTCAATTCTGATTCAGCCATTAGTGAATTTGTTGAAGCAGCCGGCACTAGTTTCCCTATATTTATAGGCTTTGGTTTGAATGAATCTGCCATATCACATTTTGCAGTAAAATACAAGAAGAGAGCATGGTTTTCTGTGGCAAAAGATTTCTCGGATAAGACCATGGAATTCTATGATTTTGACAAGGTACCTGCTTTGGTAGCTCGTCATCCAAACTATGATGAACAAAGCATCTTCTATGGCCCCTTTGAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAATTTTGTTGAGGATTATATCAAGCAGAGTTTGCTCCCACTGACTTTGCCCATTACTGAAGAAACTCTGAGATTGCTGAAAGATGATGAGAGAAAAGTTATTCTAACAATTTTGGAAGATGAAACTGATGATAGGTCTAAGAAATTATTGAAGCTCCTGAAAGCTGCTGCATCTGCAAACCGCGACTTCGTGTTTGTTTTTGTTGGGTTCAAGCAATGGCAAGGGTTTGCTGAATCATTTGACGTTTCTAAGAAAACTAAGCTGCCAAAAATGGTTGTTTGGGATGGCGATGAGGAGTACTTTTCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTGGCTCTGAGAGCGTTGAAGATGAAGATCAGGGGTCCCAAATTACACATTTTATTCAAGGATACAAAGACGGAAATATCATACAGAAACGTATTAGCTCTGGTTCTTTCATGGGTTTCATAAACTCAATGATAGGTTTGGGAACAGTGACCATCATAGTGTTTGTGGGTTGCGTGGTGATGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E705532" ref_strand="+" ref_description="SGN-E705532 [FA27BF09]">
      <seq>aaaaatagatgctgacaagtacaaacgtgttggttcaaaatatggcattgatggatatccaactttaaagatatttatgcatggtgttccaacagaatattatggaccaagaaaagcagatttacttgtacgattcttgaagaagtttgttgctgctgatgtggccatactcaattctgattcagccattagtgaatttgttgaagcagccggcactagtttccctatatttataggctttggtttgaatgaatctgccatatcacattttgcagtaaaatacaagaagagagcatggttttctgtggcaaaagatttctcggataagaccatggaattctatgattttgacaaggtacctgctttggtagctcgtcatccaaactatgatgaacaaagcatcttctatggcccctttgaagaaaattttgttgaggattatatcaagcagagtttgctcccactgactttgcccattactgaagaaactctgagattgctgaaagatgatgagagaaaagttattctaacaattttggaagatgaaactgatgataggtctaagaaattattgaagctcctgaaagctgctgcatctgcaaaccgcgacttcgtgtttgtttttgttgggttcaagcaatggcaagggtttgctgaatcatttgacgtttctaagaaaactaagctgccaaaaatggttgtttgggatggcgatgaggagtacttttcagttgttggctctgagagcgttgaagatgaagatcaggggtcccaaattacacattttattcaaggatacaaagacggaaatatcatacagaaacgtattagctctggttctttcatgggtttcataaactcaatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0132E21.2" temp_strand="-" temp_description="C06SLm0132E21.2  AC211087.2 htgs_phase:3 submitted_to_sgn_as:C06SLm0132E21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="18157" stop="14606"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17857" g_stop="17807" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17806" i_stop="16809" i_length="998">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16808" g_stop="16438" g_length="371"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="422" r_length="371" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16437" i_stop="15808" i_length="630">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.490" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15807" g_stop="15500" g_length="308"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="730" r_length="308" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15499" i_stop="15043" i_length="457">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15042" g_stop="14906" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="731" r_stop="867" r_length="137" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0132E21.2" gen_strand="-" ref_id="SGN-E705532" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>867</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0132E21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E705532" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17857" e_stop="17807"/>
          <exon e_start="16808" e_stop="16438"/>
          <exon e_start="15807" e_stop="15500"/>
          <exon e_start="15042" e_stop="14906"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATAGATGCTGACAAGTACAAACGTGTTGGTTCAAAATATGGCATTGAGTATGTGTACTTTTAGCCTTATCACTACATCGTTTTTCTGATATTAGTTTTACAATGTATGATCTGCTTCCGTTTAATAAGGTTTTCAAGAACTCAAAAGAAAGGAGGTATTCATTTGTTTTTCTGATAGTGATCACAACTGTTTGCTTTAAAATTGGATTTCATTTTTACTCTCTTAGGTTGACCATATAGGCAATTTGATTCGTATTCACCTGTGTAAAAGAAGATGATGTGTTTAAGTAAAGGAGTTACAAGTTACAACAGAAGTTTGAAAAGCAAAAAATGTAGATGCTGATAGGTCGTTGAGGGCCCAGCCACATCTATCTTTCTTTGTCCGTACGTCTGCCACGTCCTCTTTTTCCTTTCCTTTACCTTAAACCTCCATTAATTCTACCACTGATAATAATCTGATCTCCTTTGTTCCTGTCCTCTCTCAATCTTGGATCTCTCCTTCATCAATATTGTTCCTTCCCTCTCTTTGTCTAGGATGTACTTATATGGTGCTGATACGTCTGCATATGTGCTGGAGTAGGAAGTAGTATCTTTAGCTAAGTCTGTTGGAGAGGCAGAGTAGCCAGGTGACATACACGGAGAGAGTGTAATCAGGATAGTTGGAATTGATGGACAAAAGAGATGACTAGCTGGACGGGGATTGAGCTTTTTAAGTGGGAAGACTTGAATTTGGGTTCTGATCTACTTTCTGTACCGTCTCTATTTCTAATGAAGCTGGATTACCCCAAGAGTTCACCTGTCGTGTAATTCAATATGTTACTTTTTTTCTGCAAGAGAGCACTGAAAAGCGTCGAAGTGAAGATTTATTAGATGTTATTTGCTCTCCCTTAAACAAATAAAACAAATATAATGCTGAGCTGCAGGAACACATGCTTTATGGAAATTTGATTATTTCTCCCCTCGACTCTTGTTAATGAAATTAAAAGACACTGATCATTTTTATTTTATTAGAAGATATTGAATTTCTCTTTCTGATCTCAATGCAGTGGATATCCAACTTTAAAGATATTTATGCATGGTGTTCCAACAGAATATTATGGACCAAGAAAAGCAGATTTACTTGTACGATTCTTGAAGAAGTTTGTTGCTGCTGATGTGGCCATACTCAATTCTGATTCAGCCATTAGTGAATTTGTTGAAGCAGCCGGCACTAGTTTCCCTATATTTATAGGCTTTGGTTTGAATGAATCTGCCATATCACATTTTGCAGTAAAATACAAGAAGAGAGCATGGTTTTCTGTGGCAAAAGATTTCTCGGATAAGACCATGGAATTCTATGATTTTGACAAGGTACCTGCTTTGGTAGCTCGTCATCCAAACTATGATGAACAAAGCATCTTCTATGGCCCCTTTGAAGGTTAGCTTATCATCGCCTGTTATCTTAGGCTTTGGAAGTAATTAAAATCTCACTCACTTTATCAAAAAATTACTCATCTCTTCCTAGAAACTAATAAGAATTAATTATTTTTTTATCGCCTACAAAGGTCCTGAGAAAACCAGAATCTTGTTATATTTAAAGAAGTAACAGTACCACCTGCTCTGTATTTCAAAACTTGCTTTAATTCAATGATTGGCCCTTTATTTGTATTGTGTCACTTAAAAGCAGAAGTCAGCAACTCCAGATTCTGATGTGCTTAAATAATAGGGATCAATCATGAGCTAGTTGTAGTGCTTTCAAAAAGGAAGCATTCAAAAACATCAGTTGACTCTTATGATGAATTCTGATATGGTTTTGATTAGGTGGTTAAGTAATTGATTTGATTGCATGACTATAACCTTATATTATACTTTTCAGTTGATTAAATTGTTTTAGGCTTATTTATGAAAAAAGTTAAATAGCTTTAACTTCCAACCTGCCAACATTTGCTGTATTTTCTGTACTGCATGAAAAAACAAACTGATTTAAGAATTGAGCTGAAGTTGTGTTTTGGGGATTTCTGCGAAATAATGGTGAATATCTGAACCTTCTTCCTGCTATGGATCACAGAAAATTTTGTTGAGGATTATATCAAGCAGAGTTTGCTCCCACTGACTTTGCCCATTACTGAAGAAACTCTGAGATTGCTGAAAGATGATGAGAGAAAAGTTATTCTAACAATTTTGGAAGATGAAACTGATGATAGGTCTAAGAAATTATTGAAGCTCCTGAAAGCTGCTGCATCTGCAAACCGCGACTTCGTGTTTGTTTTTGTTGGGTTCAAGCAATGGCAAGGGTTTGCTGAATCATTTGACGTTTCTAAGAAAACTAAGCTGCCAAAAATGGTTGTTTGGGATGGCGATGAGGAGTACTTTTCAGTAAGTTCATTTACTTCTTTTTCTCTCCCTTTCCAGTTCCCCGCTAGGGATTGCATATTTGTCGACCCTTATCAAGTGTAGGAAATATACTTTATAGTTTGGAGTCTGGACTTTTTTCTTGTCTAACACGGCTAAAATATAGTGCTTTCAACTTATCGACTGAAGTGAACGATGAACTTTTCATTTTTGCTTAGTGTTCTGACTAAAATAAACAGCAGGGATAAACTGTACTTAACCGTACTTATTAATTGGTATCATTTCACTGCATGACACTTAATTATGTTGTTTCTCCAAGTCTGTGAGATGCCTTTTGTGAATAATATCTACCAGTAATTTTCAGTGGTTTATTAGAAGAGAGAGACATTATTTATACATAATCTACTTCTAGGTGAAGTGTCTTTTGACTAAATCACTATAAATTTAACGTAATGATTACAATTTTTTACTCATGCAACAGGTTGTTGGCTCTGAGAGCGTTGAAGATGAAGATCAGGGGTCCCAAATTACACATTTTATTCAAGGATACAAAGACGGAAATATCATACAGAAACGTATTAGCTCTGGTTCTTTCATGGGTTTCATAAACTCAATGAT</genome_strand>
        <mrna_strand>AAAAATAGATGCTGACAAGTACAAACGTGTTGGTTCAAAATATGGCATTGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGATATCCAACTTTAAAGATATTTATGCATGGTGTTCCAACAGAATATTATGGACCAAGAAAAGCAGATTTACTTGTACGATTCTTGAAGAAGTTTGTTGCTGCTGATGTGGCCATACTCAATTCTGATTCAGCCATTAGTGAATTTGTTGAAGCAGCCGGCACTAGTTTCCCTATATTTATAGGCTTTGGTTTGAATGAATCTGCCATATCACATTTTGCAGTAAAATACAAGAAGAGAGCATGGTTTTCTGTGGCAAAAGATTTCTCGGATAAGACCATGGAATTCTATGATTTTGACAAGGTACCTGCTTTGGTAGCTCGTCATCCAAACTATGATGAACAAAGCATCTTCTATGGCCCCTTTGAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAATTTTGTTGAGGATTATATCAAGCAGAGTTTGCTCCCACTGACTTTGCCCATTACTGAAGAAACTCTGAGATTGCTGAAAGATGATGAGAGAAAAGTTATTCTAACAATTTTGGAAGATGAAACTGATGATAGGTCTAAGAAATTATTGAAGCTCCTGAAAGCTGCTGCATCTGCAAACCGCGACTTCGTGTTTGTTTTTGTTGGGTTCAAGCAATGGCAAGGGTTTGCTGAATCATTTGACGTTTCTAAGAAAACTAAGCTGCCAAAAATGGTTGTTTGGGATGGCGATGAGGAGTACTTTTCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTGGCTCTGAGAGCGTTGAAGATGAAGATCAGGGGTCCCAAATTACACATTTTATTCAAGGATACAAAGACGGAAATATCATACAGAAACGTATTAGCTCTGGTTCTTTCATGGGTTTCATAAACTCAATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E727412" ref_strand="+" ref_description="SGN-E727412 [LA14CE04]">
      <seq>tttcacggccgttcatcacggcggcggagtcggaacagcagaagcaacagttgggcatagacagcggtaaagtattggaacttgatgaatctaactttgatgctgcaatttccagttttgattatattttggtcgatttctacgctccttggtgtggtcactgcaaacgacttgcacctcagttggacaaagctgctagcatacttgctgatttgaagaagcccataagtattgcaaaaatagatgctgacaagtacaaacgtgttggttcaaaatatggcattgatggatatccaactttaaagatatttatgcatggtgttccaacagaatattatggaccaagaaaagcagatttacttgtacgattcttgaagaagtttgttgctgctgatgtggccatactcaattctgattcagccattagtgaatttgttgaagcagccggcactagtttccctatatttataggctttggtttgaatgaatctgccatatcacattttgcagtaaaatacaagaagagagcatggttttctgtggcaaaagatttctcggataagaccatggaattctatgattttgacaaggtacctgctttggtagctcgtcatccaaactatgatgaacaaagcatcttctatggcccctttgaagaaaattttgttgaggattatatcaagcagagtttgctcccactgactttgcccattactgaagaaactctgagattgctgaaagatgatgagagaaaagttattctaacaattttggaagatgaaactgatgataggtctaagaaattattgaagctcctgaaagctgctgcatctgcaaaccgcgactttcgtgttgtttttgttgggttcaagcaatggcaaggggttgctgaatcatttgacgtttctaagaaaactaagctgccaaaaatggttgtttgggatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0132E21.2" temp_strand="-" temp_description="C06SLm0132E21.2  AC211087.2 htgs_phase:3 submitted_to_sgn_as:C06SLm0132E21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="19645" stop="15220"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19345" g_stop="19164" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="182" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19163" i_stop="17911" i_length="1253">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.859" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17910" g_stop="17807" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="286" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17806" i_stop="16809" i_length="998">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16808" g_stop="16438" g_length="371"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="657" r_length="371" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16437" i_stop="15808" i_length="630">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.490" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15807" g_stop="15520" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="658" r_stop="945" r_length="288" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0132E21.2" gen_strand="-" ref_id="SGN-E727412" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>945</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0132E21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E727412" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19345" e_stop="19164"/>
          <exon e_start="17910" e_stop="17807"/>
          <exon e_start="16808" e_stop="16438"/>
          <exon e_start="15807" e_stop="15520"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCACGGCCGTTCATCACGGCGGCGGAGTCGGAACAGCAGAAGCAACAGTTGGGCATAGACAGCGGTAAAGTATTGGAACTTGATGAATCTAACTTTGATGCTGCAATTTCCAGTTTTGATTATATTTTGGTCGATTTCTACGCTCCTTGGTGTGGTCACTGCAAACGACTTGCACCTCAGGTCTATTTCCTTTACTCAGTGTTGTTTATTTCTTTTGAAAGTATATAGTAGTGACCTCTACTTTTAAGAGATCTTACTCGAATGTTGTAGAAGCAGTTAACTTTCTAAGTTACGATTGTAAATGTATAACTGCAATAGATAAGATTGGGTTTCTTTACTTCAACTGTGAGTAAATCAGGTATGCGAGATAATTGATCAAATTACTAAGCAGAAAAGCCAGTGAGTTGAATGAATTAAGATCTGAAAACTAGAATAAGCATATACCTAGTTTTATGATACGTTTGCTGGGATATGTAATCTAAATTAGTATTAAAAATAAACTTTATTTAACAATGGTGGTGTCTGGCCAGCTTGTATGTATCCACTATTCATATCCACCAGCACAACTACTGAGTGACTTAGGCCACCAAGCTTAGGCGAAGGTAGAAATCTGATCTTTTTTTTTTTTTGGTCTTTGTCTTTGTTGGGTTTTGAACTCTGATCTATGAGATTTGCACCCAGTTCATGGACCACTAGGCCATATACTTAGGTGCGAAATTAGACTAAAAAGCATAGACGGACTAATTTTGCACTGTTGATGACGTAGATTCAGAACCATAAGGTTTCATGTTATAATCCCATCAGAAGTAAAGAAACACAAGGTGATTTATTGCCATGCGTCCTAACCTTTGGCGGACAAAGAAAAAAACTACCAAAAAAGTTGTGTTTCTACCTTAATCGATAAAGGACTCTTCAATTAACTTCAAAAAGGTTGATTGCTTCTCCAATGAAAAGTTATCTAGACTCTATATTGATTATGTCATTTGGCCAATTCCTAGATTCGGATATCCATACATTTTGTGAAAGTAATTTTTACTATAAATGCTTCCTAAGTATGTTTTGTGCAACCATTGTTATCAGATCTTTCTTTAGGGGGGTAGTTGGTTGGCCGCATCATCAAAATAATCTCCTTATAAAGTCCACATACCCACATGACCAACACAGTGTCTGATTGAACTCATAAGAACAAATAATCTCCGATTAAGTAATGAACTGTTTGATTGATATGGTATTAAGCTTAAGATCACATATTTTTTGCGAGAATCTATGTTTATCTTATCTATCTCTGTTAGATGACTCCCCCACCCCACCCCCCACCCAACCCGCGCGGCGACCACCACGCTCAGATTCATTTAATATGCACATTTCTCTGCGCAAGAATTGAATTCTATGTGATGCGTGGTATCAATCTGATGAATTTAAGTTCGTTGCAGTTGGACAAAGCTGCTAGCATACTTGCTGATTTGAAGAAGCCCATAAGTATTGCAAAAATAGATGCTGACAAGTACAAACGTGTTGGTTCAAAATATGGCATTGAGTATGTGTACTTTTAGCCTTATCACTACATCGTTTTTCTGATATTAGTTTTACAATGTATGATCTGCTTCCGTTTAATAAGGTTTTCAAGAACTCAAAAGAAAGGAGGTATTCATTTGTTTTTCTGATAGTGATCACAACTGTTTGCTTTAAAATTGGATTTCATTTTTACTCTCTTAGGTTGACCATATAGGCAATTTGATTCGTATTCACCTGTGTAAAAGAAGATGATGTGTTTAAGTAAAGGAGTTACAAGTTACAACAGAAGTTTGAAAAGCAAAAAATGTAGATGCTGATAGGTCGTTGAGGGCCCAGCCACATCTATCTTTCTTTGTCCGTACGTCTGCCACGTCCTCTTTTTCCTTTCCTTTACCTTAAACCTCCATTAATTCTACCACTGATAATAATCTGATCTCCTTTGTTCCTGTCCTCTCTCAATCTTGGATCTCTCCTTCATCAATATTGTTCCTTCCCTCTCTTTGTCTAGGATGTACTTATATGGTGCTGATACGTCTGCATATGTGCTGGAGTAGGAAGTAGTATCTTTAGCTAAGTCTGTTGGAGAGGCAGAGTAGCCAGGTGACATACACGGAGAGAGTGTAATCAGGATAGTTGGAATTGATGGACAAAAGAGATGACTAGCTGGACGGGGATTGAGCTTTTTAAGTGGGAAGACTTGAATTTGGGTTCTGATCTACTTTCTGTACCGTCTCTATTTCTAATGAAGCTGGATTACCCCAAGAGTTCACCTGTCGTGTAATTCAATATGTTACTTTTTTTCTGCAAGAGAGCACTGAAAAGCGTCGAAGTGAAGATTTATTAGATGTTATTTGCTCTCCCTTAAACAAATAAAACAAATATAATGCTGAGCTGCAGGAACACATGCTTTATGGAAATTTGATTATTTCTCCCCTCGACTCTTGTTAATGAAATTAAAAGACACTGATCATTTTTATTTTATTAGAAGATATTGAATTTCTCTTTCTGATCTCAATGCAGTGGATATCCAACTTTAAAGATATTTATGCATGGTGTTCCAACAGAATATTATGGACCAAGAAAAGCAGATTTACTTGTACGATTCTTGAAGAAGTTTGTTGCTGCTGATGTGGCCATACTCAATTCTGATTCAGCCATTAGTGAATTTGTTGAAGCAGCCGGCACTAGTTTCCCTATATTTATAGGCTTTGGTTTGAATGAATCTGCCATATCACATTTTGCAGTAAAATACAAGAAGAGAGCATGGTTTTCTGTGGCAAAAGATTTCTCGGATAAGACCATGGAATTCTATGATTTTGACAAGGTACCTGCTTTGGTAGCTCGTCATCCAAACTATGATGAACAAAGCATCTTCTATGGCCCCTTTGAAGGTTAGCTTATCATCGCCTGTTATCTTAGGCTTTGGAAGTAATTAAAATCTCACTCACTTTATCAAAAAATTACTCATCTCTTCCTAGAAACTAATAAGAATTAATTATTTTTTTATCGCCTACAAAGGTCCTGAGAAAACCAGAATCTTGTTATATTTAAAGAAGTAACAGTACCACCTGCTCTGTATTTCAAAACTTGCTTTAATTCAATGATTGGCCCTTTATTTGTATTGTGTCACTTAAAAGCAGAAGTCAGCAACTCCAGATTCTGATGTGCTTAAATAATAGGGATCAATCATGAGCTAGTTGTAGTGCTTTCAAAAAGGAAGCATTCAAAAACATCAGTTGACTCTTATGATGAATTCTGATATGGTTTTGATTAGGTGGTTAAGTAATTGATTTGATTGCATGACTATAACCTTATATTATACTTTTCAGTTGATTAAATTGTTTTAGGCTTATTTATGAAAAAAGTTAAATAGCTTTAACTTCCAACCTGCCAACATTTGCTGTATTTTCTGTACTGCATGAAAAAACAAACTGATTTAAGAATTGAGCTGAAGTTGTGTTTTGGGGATTTCTGCGAAATAATGGTGAATATCTGAACCTTCTTCCTGCTATGGATCACAGAAAATTTTGTTGAGGATTATATCAAGCAGAGTTTGCTCCCACTGACTTTGCCCATTACTGAAGAAACTCTGAGATTGCTGAAAGATGATGAGAGAAAAGTTATTCTAACAATTTTGGAAGATGAAACTGATGATAGGTCTAAGAAATTATTGAAGCTCCTGAAAGCTGCTGCATCTGCAAACCGCGAC-TTCGTGTTTGTTTTTGTTGGGTTCAAGCAATGGCAAGGGTTTGCTGAATCATTTGACGTTTCTAAGAAAACTAAGCTGCCAAAAATGGTTGTTTGGGATG</genome_strand>
        <mrna_strand>TTTCACGGCCGTTCATCACGGCGGCGGAGTCGGAACAGCAGAAGCAACAGTTGGGCATAGACAGCGGTAAAGTATTGGAACTTGATGAATCTAACTTTGATGCTGCAATTTCCAGTTTTGATTATATTTTGGTCGATTTCTACGCTCCTTGGTGTGGTCACTGCAAACGACTTGCACCTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGACAAAGCTGCTAGCATACTTGCTGATTTGAAGAAGCCCATAAGTATTGCAAAAATAGATGCTGACAAGTACAAACGTGTTGGTTCAAAATATGGCATTGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGATATCCAACTTTAAAGATATTTATGCATGGTGTTCCAACAGAATATTATGGACCAAGAAAAGCAGATTTACTTGTACGATTCTTGAAGAAGTTTGTTGCTGCTGATGTGGCCATACTCAATTCTGATTCAGCCATTAGTGAATTTGTTGAAGCAGCCGGCACTAGTTTCCCTATATTTATAGGCTTTGGTTTGAATGAATCTGCCATATCACATTTTGCAGTAAAATACAAGAAGAGAGCATGGTTTTCTGTGGCAAAAGATTTCTCGGATAAGACCATGGAATTCTATGATTTTGACAAGGTACCTGCTTTGGTAGCTCGTCATCCAAACTATGATGAACAAAGCATCTTCTATGGCCCCTTTGAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAATTTTGTTGAGGATTATATCAAGCAGAGTTTGCTCCCACTGACTTTGCCCATTACTGAAGAAACTCTGAGATTGCTGAAAGATGATGAGAGAAAAGTTATTCTAACAATTTTGGAAGATGAAACTGATGATAGGTCTAAGAAATTATTGAAGCTCCTGAAAGCTGCTGCATCTGCAAACCGCGACTTTCGTG-TTGTTTTTGTTGGGTTCAAGCAATGGCAAGGGGTTGCTGAATCATTTGACGTTTCTAAGAAAACTAAGCTGCCAAAAATGGTTGTTTGGGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E390682" ref_strand="+" ref_description="SGN-E390682 [TUS-46-H6]">
      <seq>gttcatcacggcggcggagtcggaacagcagaagcaacagttgggcatagacagcggtaaagtattggaacttgatgaatctaactttgatgctgcaatttccagttttgattatattttggtcgatttctacgctccttggtgtggtcactgcaaacgacttgcacctcagttggacaaagctgctagcatacttgctgatttgaagaagcccataagtattgcaaaaatagatgctgacaagtacaaacgtgttggttcaaaatatggcattgatggatatccaactttaaagatatttatgcatggtgttccaacagaatattatggaccaagaaaagcagatttacttgtacgattcttgaagaagtttgttgctgctgatgtggccatactcaattctgattcagccattagtgaatttgttgaagcagccggcactagtttccctatatttataggctttggtttgaatgaatctgccatatcacattttgcagtaaaatacaagaagagagcatggttttctgtggcaaaagatttctcggataagaccatggaattctatgattttgacaaggtacctgctttggtagctcgtcatccaaactatgatgaacaaagcatcttctatggcccctttgaagaaaattttgttgaggattatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0132E21.2" temp_strand="-" temp_description="C06SLm0132E21.2  AC211087.2 htgs_phase:3 submitted_to_sgn_as:C06SLm0132E21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="19635" stop="15486"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19335" g_stop="19164" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="172" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19163" i_stop="17911" i_length="1253">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.859" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17910" g_stop="17807" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="276" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17806" i_stop="16809" i_length="998">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16808" g_stop="16438" g_length="371"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="647" r_length="371" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16437" i_stop="15808" i_length="630">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.490" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15807" g_stop="15786" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="648" r_stop="669" r_length="22" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0132E21.2" gen_strand="-" ref_id="SGN-E390682" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>669</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0132E21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E390682" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19335" e_stop="19164"/>
          <exon e_start="17910" e_stop="17807"/>
          <exon e_start="16808" e_stop="16438"/>
          <exon e_start="15807" e_stop="15786"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCATCACGGCGGCGGAGTCGGAACAGCAGAAGCAACAGTTGGGCATAGACAGCGGTAAAGTATTGGAACTTGATGAATCTAACTTTGATGCTGCAATTTCCAGTTTTGATTATATTTTGGTCGATTTCTACGCTCCTTGGTGTGGTCACTGCAAACGACTTGCACCTCAGGTCTATTTCCTTTACTCAGTGTTGTTTATTTCTTTTGAAAGTATATAGTAGTGACCTCTACTTTTAAGAGATCTTACTCGAATGTTGTAGAAGCAGTTAACTTTCTAAGTTACGATTGTAAATGTATAACTGCAATAGATAAGATTGGGTTTCTTTACTTCAACTGTGAGTAAATCAGGTATGCGAGATAATTGATCAAATTACTAAGCAGAAAAGCCAGTGAGTTGAATGAATTAAGATCTGAAAACTAGAATAAGCATATACCTAGTTTTATGATACGTTTGCTGGGATATGTAATCTAAATTAGTATTAAAAATAAACTTTATTTAACAATGGTGGTGTCTGGCCAGCTTGTATGTATCCACTATTCATATCCACCAGCACAACTACTGAGTGACTTAGGCCACCAAGCTTAGGCGAAGGTAGAAATCTGATCTTTTTTTTTTTTTGGTCTTTGTCTTTGTTGGGTTTTGAACTCTGATCTATGAGATTTGCACCCAGTTCATGGACCACTAGGCCATATACTTAGGTGCGAAATTAGACTAAAAAGCATAGACGGACTAATTTTGCACTGTTGATGACGTAGATTCAGAACCATAAGGTTTCATGTTATAATCCCATCAGAAGTAAAGAAACACAAGGTGATTTATTGCCATGCGTCCTAACCTTTGGCGGACAAAGAAAAAAACTACCAAAAAAGTTGTGTTTCTACCTTAATCGATAAAGGACTCTTCAATTAACTTCAAAAAGGTTGATTGCTTCTCCAATGAAAAGTTATCTAGACTCTATATTGATTATGTCATTTGGCCAATTCCTAGATTCGGATATCCATACATTTTGTGAAAGTAATTTTTACTATAAATGCTTCCTAAGTATGTTTTGTGCAACCATTGTTATCAGATCTTTCTTTAGGGGGGTAGTTGGTTGGCCGCATCATCAAAATAATCTCCTTATAAAGTCCACATACCCACATGACCAACACAGTGTCTGATTGAACTCATAAGAACAAATAATCTCCGATTAAGTAATGAACTGTTTGATTGATATGGTATTAAGCTTAAGATCACATATTTTTTGCGAGAATCTATGTTTATCTTATCTATCTCTGTTAGATGACTCCCCCACCCCACCCCCCACCCAACCCGCGCGGCGACCACCACGCTCAGATTCATTTAATATGCACATTTCTCTGCGCAAGAATTGAATTCTATGTGATGCGTGGTATCAATCTGATGAATTTAAGTTCGTTGCAGTTGGACAAAGCTGCTAGCATACTTGCTGATTTGAAGAAGCCCATAAGTATTGCAAAAATAGATGCTGACAAGTACAAACGTGTTGGTTCAAAATATGGCATTGAGTATGTGTACTTTTAGCCTTATCACTACATCGTTTTTCTGATATTAGTTTTACAATGTATGATCTGCTTCCGTTTAATAAGGTTTTCAAGAACTCAAAAGAAAGGAGGTATTCATTTGTTTTTCTGATAGTGATCACAACTGTTTGCTTTAAAATTGGATTTCATTTTTACTCTCTTAGGTTGACCATATAGGCAATTTGATTCGTATTCACCTGTGTAAAAGAAGATGATGTGTTTAAGTAAAGGAGTTACAAGTTACAACAGAAGTTTGAAAAGCAAAAAATGTAGATGCTGATAGGTCGTTGAGGGCCCAGCCACATCTATCTTTCTTTGTCCGTACGTCTGCCACGTCCTCTTTTTCCTTTCCTTTACCTTAAACCTCCATTAATTCTACCACTGATAATAATCTGATCTCCTTTGTTCCTGTCCTCTCTCAATCTTGGATCTCTCCTTCATCAATATTGTTCCTTCCCTCTCTTTGTCTAGGATGTACTTATATGGTGCTGATACGTCTGCATATGTGCTGGAGTAGGAAGTAGTATCTTTAGCTAAGTCTGTTGGAGAGGCAGAGTAGCCAGGTGACATACACGGAGAGAGTGTAATCAGGATAGTTGGAATTGATGGACAAAAGAGATGACTAGCTGGACGGGGATTGAGCTTTTTAAGTGGGAAGACTTGAATTTGGGTTCTGATCTACTTTCTGTACCGTCTCTATTTCTAATGAAGCTGGATTACCCCAAGAGTTCACCTGTCGTGTAATTCAATATGTTACTTTTTTTCTGCAAGAGAGCACTGAAAAGCGTCGAAGTGAAGATTTATTAGATGTTATTTGCTCTCCCTTAAACAAATAAAACAAATATAATGCTGAGCTGCAGGAACACATGCTTTATGGAAATTTGATTATTTCTCCCCTCGACTCTTGTTAATGAAATTAAAAGACACTGATCATTTTTATTTTATTAGAAGATATTGAATTTCTCTTTCTGATCTCAATGCAGTGGATATCCAACTTTAAAGATATTTATGCATGGTGTTCCAACAGAATATTATGGACCAAGAAAAGCAGATTTACTTGTACGATTCTTGAAGAAGTTTGTTGCTGCTGATGTGGCCATACTCAATTCTGATTCAGCCATTAGTGAATTTGTTGAAGCAGCCGGCACTAGTTTCCCTATATTTATAGGCTTTGGTTTGAATGAATCTGCCATATCACATTTTGCAGTAAAATACAAGAAGAGAGCATGGTTTTCTGTGGCAAAAGATTTCTCGGATAAGACCATGGAATTCTATGATTTTGACAAGGTACCTGCTTTGGTAGCTCGTCATCCAAACTATGATGAACAAAGCATCTTCTATGGCCCCTTTGAAGGTTAGCTTATCATCGCCTGTTATCTTAGGCTTTGGAAGTAATTAAAATCTCACTCACTTTATCAAAAAATTACTCATCTCTTCCTAGAAACTAATAAGAATTAATTATTTTTTTATCGCCTACAAAGGTCCTGAGAAAACCAGAATCTTGTTATATTTAAAGAAGTAACAGTACCACCTGCTCTGTATTTCAAAACTTGCTTTAATTCAATGATTGGCCCTTTATTTGTATTGTGTCACTTAAAAGCAGAAGTCAGCAACTCCAGATTCTGATGTGCTTAAATAATAGGGATCAATCATGAGCTAGTTGTAGTGCTTTCAAAAAGGAAGCATTCAAAAACATCAGTTGACTCTTATGATGAATTCTGATATGGTTTTGATTAGGTGGTTAAGTAATTGATTTGATTGCATGACTATAACCTTATATTATACTTTTCAGTTGATTAAATTGTTTTAGGCTTATTTATGAAAAAAGTTAAATAGCTTTAACTTCCAACCTGCCAACATTTGCTGTATTTTCTGTACTGCATGAAAAAACAAACTGATTTAAGAATTGAGCTGAAGTTGTGTTTTGGGGATTTCTGCGAAATAATGGTGAATATCTGAACCTTCTTCCTGCTATGGATCACAGAAAATTTTGTTGAGGATTATAT</genome_strand>
        <mrna_strand>GTTCATCACGGCGGCGGAGTCGGAACAGCAGAAGCAACAGTTGGGCATAGACAGCGGTAAAGTATTGGAACTTGATGAATCTAACTTTGATGCTGCAATTTCCAGTTTTGATTATATTTTGGTCGATTTCTACGCTCCTTGGTGTGGTCACTGCAAACGACTTGCACCTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGACAAAGCTGCTAGCATACTTGCTGATTTGAAGAAGCCCATAAGTATTGCAAAAATAGATGCTGACAAGTACAAACGTGTTGGTTCAAAATATGGCATTGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGATATCCAACTTTAAAGATATTTATGCATGGTGTTCCAACAGAATATTATGGACCAAGAAAAGCAGATTTACTTGTACGATTCTTGAAGAAGTTTGTTGCTGCTGATGTGGCCATACTCAATTCTGATTCAGCCATTAGTGAATTTGTTGAAGCAGCCGGCACTAGTTTCCCTATATTTATAGGCTTTGGTTTGAATGAATCTGCCATATCACATTTTGCAGTAAAATACAAGAAGAGAGCATGGTTTTCTGTGGCAAAAGATTTCTCGGATAAGACCATGGAATTCTATGATTTTGACAAGGTACCTGCTTTGGTAGCTCGTCATCCAAACTATGATGAACAAAGCATCTTCTATGGCCCCTTTGAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAATTTTGTTGAGGATTATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E373998" ref_strand="+" ref_description="SGN-E373998 [TUS-33-A9]">
      <seq>ttcatcacggcggcggagtcggaacagcagaagcaacagttgggcatagacagcggtaaagtattggaacttgatgaatctaactttgatgctgcaatttccagttttgattatattttggtcgatttctacgctccttggtgtggtcactgcaaacgacttgcacctcagttggacaaagctgctagcatacttgctgatttgaagaagcccataagtattgcaaaaatagatgctgacaagtacaaacgtgttggttcaaaatatggcattgatggatatccaactttaaagatatttatgcatggtgttccaacagaatattatggaccaagaaaagcagatttacttgtacgattcttgaagaagtttgttgctgctgatgtggccatactcaattctgattcagccattagtgaatttgttgaagcagccggcactagtttccctatatttataggctttggtttgaatgaatctgccatatcacattttgcagtaaaatacaagaagagagcatggttttctgtggcaaaagatttctcggataagaccatggaattctatgattttgacaaggtacctgctttggtagctcgtcatccaaactatgatgaacaaagcatcttctatggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0132E21.2" temp_strand="-" temp_description="C06SLm0132E21.2  AC211087.2 htgs_phase:3 submitted_to_sgn_as:C06SLm0132E21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="19634" stop="16148"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19334" g_stop="19164" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="171" r_length="171" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19163" i_stop="17911" i_length="1253">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.859" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17910" g_stop="17807" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="275" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17806" i_stop="16809" i_length="998">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16808" g_stop="16448" g_length="361"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="636" r_length="361" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0132E21.2" gen_strand="-" ref_id="SGN-E373998" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>636</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0132E21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E373998" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19334" e_stop="19164"/>
          <exon e_start="17910" e_stop="17807"/>
          <exon e_start="16808" e_stop="16448"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATCACGGCGGCGGAGTCGGAACAGCAGAAGCAACAGTTGGGCATAGACAGCGGTAAAGTATTGGAACTTGATGAATCTAACTTTGATGCTGCAATTTCCAGTTTTGATTATATTTTGGTCGATTTCTACGCTCCTTGGTGTGGTCACTGCAAACGACTTGCACCTCAGGTCTATTTCCTTTACTCAGTGTTGTTTATTTCTTTTGAAAGTATATAGTAGTGACCTCTACTTTTAAGAGATCTTACTCGAATGTTGTAGAAGCAGTTAACTTTCTAAGTTACGATTGTAAATGTATAACTGCAATAGATAAGATTGGGTTTCTTTACTTCAACTGTGAGTAAATCAGGTATGCGAGATAATTGATCAAATTACTAAGCAGAAAAGCCAGTGAGTTGAATGAATTAAGATCTGAAAACTAGAATAAGCATATACCTAGTTTTATGATACGTTTGCTGGGATATGTAATCTAAATTAGTATTAAAAATAAACTTTATTTAACAATGGTGGTGTCTGGCCAGCTTGTATGTATCCACTATTCATATCCACCAGCACAACTACTGAGTGACTTAGGCCACCAAGCTTAGGCGAAGGTAGAAATCTGATCTTTTTTTTTTTTTGGTCTTTGTCTTTGTTGGGTTTTGAACTCTGATCTATGAGATTTGCACCCAGTTCATGGACCACTAGGCCATATACTTAGGTGCGAAATTAGACTAAAAAGCATAGACGGACTAATTTTGCACTGTTGATGACGTAGATTCAGAACCATAAGGTTTCATGTTATAATCCCATCAGAAGTAAAGAAACACAAGGTGATTTATTGCCATGCGTCCTAACCTTTGGCGGACAAAGAAAAAAACTACCAAAAAAGTTGTGTTTCTACCTTAATCGATAAAGGACTCTTCAATTAACTTCAAAAAGGTTGATTGCTTCTCCAATGAAAAGTTATCTAGACTCTATATTGATTATGTCATTTGGCCAATTCCTAGATTCGGATATCCATACATTTTGTGAAAGTAATTTTTACTATAAATGCTTCCTAAGTATGTTTTGTGCAACCATTGTTATCAGATCTTTCTTTAGGGGGGTAGTTGGTTGGCCGCATCATCAAAATAATCTCCTTATAAAGTCCACATACCCACATGACCAACACAGTGTCTGATTGAACTCATAAGAACAAATAATCTCCGATTAAGTAATGAACTGTTTGATTGATATGGTATTAAGCTTAAGATCACATATTTTTTGCGAGAATCTATGTTTATCTTATCTATCTCTGTTAGATGACTCCCCCACCCCACCCCCCACCCAACCCGCGCGGCGACCACCACGCTCAGATTCATTTAATATGCACATTTCTCTGCGCAAGAATTGAATTCTATGTGATGCGTGGTATCAATCTGATGAATTTAAGTTCGTTGCAGTTGGACAAAGCTGCTAGCATACTTGCTGATTTGAAGAAGCCCATAAGTATTGCAAAAATAGATGCTGACAAGTACAAACGTGTTGGTTCAAAATATGGCATTGAGTATGTGTACTTTTAGCCTTATCACTACATCGTTTTTCTGATATTAGTTTTACAATGTATGATCTGCTTCCGTTTAATAAGGTTTTCAAGAACTCAAAAGAAAGGAGGTATTCATTTGTTTTTCTGATAGTGATCACAACTGTTTGCTTTAAAATTGGATTTCATTTTTACTCTCTTAGGTTGACCATATAGGCAATTTGATTCGTATTCACCTGTGTAAAAGAAGATGATGTGTTTAAGTAAAGGAGTTACAAGTTACAACAGAAGTTTGAAAAGCAAAAAATGTAGATGCTGATAGGTCGTTGAGGGCCCAGCCACATCTATCTTTCTTTGTCCGTACGTCTGCCACGTCCTCTTTTTCCTTTCCTTTACCTTAAACCTCCATTAATTCTACCACTGATAATAATCTGATCTCCTTTGTTCCTGTCCTCTCTCAATCTTGGATCTCTCCTTCATCAATATTGTTCCTTCCCTCTCTTTGTCTAGGATGTACTTATATGGTGCTGATACGTCTGCATATGTGCTGGAGTAGGAAGTAGTATCTTTAGCTAAGTCTGTTGGAGAGGCAGAGTAGCCAGGTGACATACACGGAGAGAGTGTAATCAGGATAGTTGGAATTGATGGACAAAAGAGATGACTAGCTGGACGGGGATTGAGCTTTTTAAGTGGGAAGACTTGAATTTGGGTTCTGATCTACTTTCTGTACCGTCTCTATTTCTAATGAAGCTGGATTACCCCAAGAGTTCACCTGTCGTGTAATTCAATATGTTACTTTTTTTCTGCAAGAGAGCACTGAAAAGCGTCGAAGTGAAGATTTATTAGATGTTATTTGCTCTCCCTTAAACAAATAAAACAAATATAATGCTGAGCTGCAGGAACACATGCTTTATGGAAATTTGATTATTTCTCCCCTCGACTCTTGTTAATGAAATTAAAAGACACTGATCATTTTTATTTTATTAGAAGATATTGAATTTCTCTTTCTGATCTCAATGCAGTGGATATCCAACTTTAAAGATATTTATGCATGGTGTTCCAACAGAATATTATGGACCAAGAAAAGCAGATTTACTTGTACGATTCTTGAAGAAGTTTGTTGCTGCTGATGTGGCCATACTCAATTCTGATTCAGCCATTAGTGAATTTGTTGAAGCAGCCGGCACTAGTTTCCCTATATTTATAGGCTTTGGTTTGAATGAATCTGCCATATCACATTTTGCAGTAAAATACAAGAAGAGAGCATGGTTTTCTGTGGCAAAAGATTTCTCGGATAAGACCATGGAATTCTATGATTTTGACAAGGTACCTGCTTTGGTAGCTCGTCATCCAAACTATGATGAACAAAGCATCTTCTATGGC</genome_strand>
        <mrna_strand>TTCATCACGGCGGCGGAGTCGGAACAGCAGAAGCAACAGTTGGGCATAGACAGCGGTAAAGTATTGGAACTTGATGAATCTAACTTTGATGCTGCAATTTCCAGTTTTGATTATATTTTGGTCGATTTCTACGCTCCTTGGTGTGGTCACTGCAAACGACTTGCACCTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGACAAAGCTGCTAGCATACTTGCTGATTTGAAGAAGCCCATAAGTATTGCAAAAATAGATGCTGACAAGTACAAACGTGTTGGTTCAAAATATGGCATTGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGATATCCAACTTTAAAGATATTTATGCATGGTGTTCCAACAGAATATTATGGACCAAGAAAAGCAGATTTACTTGTACGATTCTTGAAGAAGTTTGTTGCTGCTGATGTGGCCATACTCAATTCTGATTCAGCCATTAGTGAATTTGTTGAAGCAGCCGGCACTAGTTTCCCTATATTTATAGGCTTTGGTTTGAATGAATCTGCCATATCACATTTTGCAGTAAAATACAAGAAGAGAGCATGGTTTTCTGTGGCAAAAGATTTCTCGGATAAGACCATGGAATTCTATGATTTTGACAAGGTACCTGCTTTGGTAGCTCGTCATCCAAACTATGATGAACAAAGCATCTTCTATGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E338694" ref_strand="+" ref_description="SGN-E338694 [cTOE-15-P14]">
      <seq>tttcacggccgttcatcacggcggcggagtcggaacagcagaagcaacagttgggcatagacagcggtaaagtattggaacttgatgaatctaactttgatgctgcaatttccagttttgattatattttggtcgatttctacgctccttggtgtggtcactgcaaacgacttgcacctcagttggacaaagctgctagcatacttgctgatttgaagaagcccataagtattgcaaaaatagatgctgacaagtacaaacgtgttggttcaaaatatggcattgatggatatccaactttaaagatatttatgcatggtgttccaacagaatattatggaccaagaaaagcagatttacttgtacgattcttgaagaagtttgttgctgctgatgtggccatactcaattctgattcagccattagtgaatttgttgaagcagccggcactagtttccctatatttataggctttggtttgaatgaatctgccatatcacattttgcagtaaaatacaagaagagag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0132E21.2" temp_strand="-" temp_description="C06SLm0132E21.2  AC211087.2 htgs_phase:3 submitted_to_sgn_as:C06SLm0132E21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="19645" stop="16267"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19345" g_stop="19164" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="182" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19163" i_stop="17911" i_length="1253">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.859" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17910" g_stop="17807" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="286" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17806" i_stop="16809" i_length="998">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16808" g_stop="16567" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="528" r_length="242" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0132E21.2" gen_strand="-" ref_id="SGN-E338694" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>528</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0132E21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E338694" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19345" e_stop="19164"/>
          <exon e_start="17910" e_stop="17807"/>
          <exon e_start="16808" e_stop="16567"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCACGGCCGTTCATCACGGCGGCGGAGTCGGAACAGCAGAAGCAACAGTTGGGCATAGACAGCGGTAAAGTATTGGAACTTGATGAATCTAACTTTGATGCTGCAATTTCCAGTTTTGATTATATTTTGGTCGATTTCTACGCTCCTTGGTGTGGTCACTGCAAACGACTTGCACCTCAGGTCTATTTCCTTTACTCAGTGTTGTTTATTTCTTTTGAAAGTATATAGTAGTGACCTCTACTTTTAAGAGATCTTACTCGAATGTTGTAGAAGCAGTTAACTTTCTAAGTTACGATTGTAAATGTATAACTGCAATAGATAAGATTGGGTTTCTTTACTTCAACTGTGAGTAAATCAGGTATGCGAGATAATTGATCAAATTACTAAGCAGAAAAGCCAGTGAGTTGAATGAATTAAGATCTGAAAACTAGAATAAGCATATACCTAGTTTTATGATACGTTTGCTGGGATATGTAATCTAAATTAGTATTAAAAATAAACTTTATTTAACAATGGTGGTGTCTGGCCAGCTTGTATGTATCCACTATTCATATCCACCAGCACAACTACTGAGTGACTTAGGCCACCAAGCTTAGGCGAAGGTAGAAATCTGATCTTTTTTTTTTTTTGGTCTTTGTCTTTGTTGGGTTTTGAACTCTGATCTATGAGATTTGCACCCAGTTCATGGACCACTAGGCCATATACTTAGGTGCGAAATTAGACTAAAAAGCATAGACGGACTAATTTTGCACTGTTGATGACGTAGATTCAGAACCATAAGGTTTCATGTTATAATCCCATCAGAAGTAAAGAAACACAAGGTGATTTATTGCCATGCGTCCTAACCTTTGGCGGACAAAGAAAAAAACTACCAAAAAAGTTGTGTTTCTACCTTAATCGATAAAGGACTCTTCAATTAACTTCAAAAAGGTTGATTGCTTCTCCAATGAAAAGTTATCTAGACTCTATATTGATTATGTCATTTGGCCAATTCCTAGATTCGGATATCCATACATTTTGTGAAAGTAATTTTTACTATAAATGCTTCCTAAGTATGTTTTGTGCAACCATTGTTATCAGATCTTTCTTTAGGGGGGTAGTTGGTTGGCCGCATCATCAAAATAATCTCCTTATAAAGTCCACATACCCACATGACCAACACAGTGTCTGATTGAACTCATAAGAACAAATAATCTCCGATTAAGTAATGAACTGTTTGATTGATATGGTATTAAGCTTAAGATCACATATTTTTTGCGAGAATCTATGTTTATCTTATCTATCTCTGTTAGATGACTCCCCCACCCCACCCCCCACCCAACCCGCGCGGCGACCACCACGCTCAGATTCATTTAATATGCACATTTCTCTGCGCAAGAATTGAATTCTATGTGATGCGTGGTATCAATCTGATGAATTTAAGTTCGTTGCAGTTGGACAAAGCTGCTAGCATACTTGCTGATTTGAAGAAGCCCATAAGTATTGCAAAAATAGATGCTGACAAGTACAAACGTGTTGGTTCAAAATATGGCATTGAGTATGTGTACTTTTAGCCTTATCACTACATCGTTTTTCTGATATTAGTTTTACAATGTATGATCTGCTTCCGTTTAATAAGGTTTTCAAGAACTCAAAAGAAAGGAGGTATTCATTTGTTTTTCTGATAGTGATCACAACTGTTTGCTTTAAAATTGGATTTCATTTTTACTCTCTTAGGTTGACCATATAGGCAATTTGATTCGTATTCACCTGTGTAAAAGAAGATGATGTGTTTAAGTAAAGGAGTTACAAGTTACAACAGAAGTTTGAAAAGCAAAAAATGTAGATGCTGATAGGTCGTTGAGGGCCCAGCCACATCTATCTTTCTTTGTCCGTACGTCTGCCACGTCCTCTTTTTCCTTTCCTTTACCTTAAACCTCCATTAATTCTACCACTGATAATAATCTGATCTCCTTTGTTCCTGTCCTCTCTCAATCTTGGATCTCTCCTTCATCAATATTGTTCCTTCCCTCTCTTTGTCTAGGATGTACTTATATGGTGCTGATACGTCTGCATATGTGCTGGAGTAGGAAGTAGTATCTTTAGCTAAGTCTGTTGGAGAGGCAGAGTAGCCAGGTGACATACACGGAGAGAGTGTAATCAGGATAGTTGGAATTGATGGACAAAAGAGATGACTAGCTGGACGGGGATTGAGCTTTTTAAGTGGGAAGACTTGAATTTGGGTTCTGATCTACTTTCTGTACCGTCTCTATTTCTAATGAAGCTGGATTACCCCAAGAGTTCACCTGTCGTGTAATTCAATATGTTACTTTTTTTCTGCAAGAGAGCACTGAAAAGCGTCGAAGTGAAGATTTATTAGATGTTATTTGCTCTCCCTTAAACAAATAAAACAAATATAATGCTGAGCTGCAGGAACACATGCTTTATGGAAATTTGATTATTTCTCCCCTCGACTCTTGTTAATGAAATTAAAAGACACTGATCATTTTTATTTTATTAGAAGATATTGAATTTCTCTTTCTGATCTCAATGCAGTGGATATCCAACTTTAAAGATATTTATGCATGGTGTTCCAACAGAATATTATGGACCAAGAAAAGCAGATTTACTTGTACGATTCTTGAAGAAGTTTGTTGCTGCTGATGTGGCCATACTCAATTCTGATTCAGCCATTAGTGAATTTGTTGAAGCAGCCGGCACTAGTTTCCCTATATTTATAGGCTTTGGTTTGAATGAATCTGCCATATCACATTTTGCAGTAAAATACAAGAAGAGAG</genome_strand>
        <mrna_strand>TTTCACGGCCGTTCATCACGGCGGCGGAGTCGGAACAGCAGAAGCAACAGTTGGGCATAGACAGCGGTAAAGTATTGGAACTTGATGAATCTAACTTTGATGCTGCAATTTCCAGTTTTGATTATATTTTGGTCGATTTCTACGCTCCTTGGTGTGGTCACTGCAAACGACTTGCACCTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGACAAAGCTGCTAGCATACTTGCTGATTTGAAGAAGCCCATAAGTATTGCAAAAATAGATGCTGACAAGTACAAACGTGTTGGTTCAAAATATGGCATTGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGATATCCAACTTTAAAGATATTTATGCATGGTGTTCCAACAGAATATTATGGACCAAGAAAAGCAGATTTACTTGTACGATTCTTGAAGAAGTTTGTTGCTGCTGATGTGGCCATACTCAATTCTGATTCAGCCATTAGTGAATTTGTTGAAGCAGCCGGCACTAGTTTCCCTATATTTATAGGCTTTGGTTTGAATGAATCTGCCATATCACATTTTGCAGTAAAATACAAGAAGAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E298703" ref_strand="+" ref_description="SGN-E298703 [cLET-44-L7]">
      <seq>ttcatcacggcggcggagtcggaacatctgaagcaacagttgggcatagacagcggtaaagtattggaacttgatgaatctaactttgatgctgcaatttccagttttgattatattttggtcgatttctacgctccttggtgtggtcactgcaaacgacttgcacctcatttggacaaagctgctagcatacttgctgatttgaagaagcccataagtattgcaaaaatagatgctgacaagtacaaacgtgttggttcaaaatatggcattgatggatatccaactttaaagatatttatgcatggtgttccaacagaatattatggaccaagaaaagcagatttacttgtacgattcttgaagaagtttgttgctgctgatgtggccatactcaattctgattcagccattagtgaatttgttgaagcagccggcactagtttccctatatttataggctttggtttgaatgaatctgccatatcacattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0132E21.2" temp_strand="-" temp_description="C06SLm0132E21.2  AC211087.2 htgs_phase:3 submitted_to_sgn_as:C06SLm0132E21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="19634" stop="16290"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19334" g_stop="19164" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="171" r_length="171" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19163" i_stop="17911" i_length="1253">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.859" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17910" g_stop="17807" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="275" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17806" i_stop="16809" i_length="998">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16808" g_stop="16590" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="494" r_length="219" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0132E21.2" gen_strand="-" ref_id="SGN-E298703" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>494</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0132E21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E298703" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19334" e_stop="19164"/>
          <exon e_start="17910" e_stop="17807"/>
          <exon e_start="16808" e_stop="16590"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATCACGGCGGCGGAGTCGGAACAGCAGAAGCAACAGTTGGGCATAGACAGCGGTAAAGTATTGGAACTTGATGAATCTAACTTTGATGCTGCAATTTCCAGTTTTGATTATATTTTGGTCGATTTCTACGCTCCTTGGTGTGGTCACTGCAAACGACTTGCACCTCAGGTCTATTTCCTTTACTCAGTGTTGTTTATTTCTTTTGAAAGTATATAGTAGTGACCTCTACTTTTAAGAGATCTTACTCGAATGTTGTAGAAGCAGTTAACTTTCTAAGTTACGATTGTAAATGTATAACTGCAATAGATAAGATTGGGTTTCTTTACTTCAACTGTGAGTAAATCAGGTATGCGAGATAATTGATCAAATTACTAAGCAGAAAAGCCAGTGAGTTGAATGAATTAAGATCTGAAAACTAGAATAAGCATATACCTAGTTTTATGATACGTTTGCTGGGATATGTAATCTAAATTAGTATTAAAAATAAACTTTATTTAACAATGGTGGTGTCTGGCCAGCTTGTATGTATCCACTATTCATATCCACCAGCACAACTACTGAGTGACTTAGGCCACCAAGCTTAGGCGAAGGTAGAAATCTGATCTTTTTTTTTTTTTGGTCTTTGTCTTTGTTGGGTTTTGAACTCTGATCTATGAGATTTGCACCCAGTTCATGGACCACTAGGCCATATACTTAGGTGCGAAATTAGACTAAAAAGCATAGACGGACTAATTTTGCACTGTTGATGACGTAGATTCAGAACCATAAGGTTTCATGTTATAATCCCATCAGAAGTAAAGAAACACAAGGTGATTTATTGCCATGCGTCCTAACCTTTGGCGGACAAAGAAAAAAACTACCAAAAAAGTTGTGTTTCTACCTTAATCGATAAAGGACTCTTCAATTAACTTCAAAAAGGTTGATTGCTTCTCCAATGAAAAGTTATCTAGACTCTATATTGATTATGTCATTTGGCCAATTCCTAGATTCGGATATCCATACATTTTGTGAAAGTAATTTTTACTATAAATGCTTCCTAAGTATGTTTTGTGCAACCATTGTTATCAGATCTTTCTTTAGGGGGGTAGTTGGTTGGCCGCATCATCAAAATAATCTCCTTATAAAGTCCACATACCCACATGACCAACACAGTGTCTGATTGAACTCATAAGAACAAATAATCTCCGATTAAGTAATGAACTGTTTGATTGATATGGTATTAAGCTTAAGATCACATATTTTTTGCGAGAATCTATGTTTATCTTATCTATCTCTGTTAGATGACTCCCCCACCCCACCCCCCACCCAACCCGCGCGGCGACCACCACGCTCAGATTCATTTAATATGCACATTTCTCTGCGCAAGAATTGAATTCTATGTGATGCGTGGTATCAATCTGATGAATTTAAGTTCGTTGCAGTTGGACAAAGCTGCTAGCATACTTGCTGATTTGAAGAAGCCCATAAGTATTGCAAAAATAGATGCTGACAAGTACAAACGTGTTGGTTCAAAATATGGCATTGAGTATGTGTACTTTTAGCCTTATCACTACATCGTTTTTCTGATATTAGTTTTACAATGTATGATCTGCTTCCGTTTAATAAGGTTTTCAAGAACTCAAAAGAAAGGAGGTATTCATTTGTTTTTCTGATAGTGATCACAACTGTTTGCTTTAAAATTGGATTTCATTTTTACTCTCTTAGGTTGACCATATAGGCAATTTGATTCGTATTCACCTGTGTAAAAGAAGATGATGTGTTTAAGTAAAGGAGTTACAAGTTACAACAGAAGTTTGAAAAGCAAAAAATGTAGATGCTGATAGGTCGTTGAGGGCCCAGCCACATCTATCTTTCTTTGTCCGTACGTCTGCCACGTCCTCTTTTTCCTTTCCTTTACCTTAAACCTCCATTAATTCTACCACTGATAATAATCTGATCTCCTTTGTTCCTGTCCTCTCTCAATCTTGGATCTCTCCTTCATCAATATTGTTCCTTCCCTCTCTTTGTCTAGGATGTACTTATATGGTGCTGATACGTCTGCATATGTGCTGGAGTAGGAAGTAGTATCTTTAGCTAAGTCTGTTGGAGAGGCAGAGTAGCCAGGTGACATACACGGAGAGAGTGTAATCAGGATAGTTGGAATTGATGGACAAAAGAGATGACTAGCTGGACGGGGATTGAGCTTTTTAAGTGGGAAGACTTGAATTTGGGTTCTGATCTACTTTCTGTACCGTCTCTATTTCTAATGAAGCTGGATTACCCCAAGAGTTCACCTGTCGTGTAATTCAATATGTTACTTTTTTTCTGCAAGAGAGCACTGAAAAGCGTCGAAGTGAAGATTTATTAGATGTTATTTGCTCTCCCTTAAACAAATAAAACAAATATAATGCTGAGCTGCAGGAACACATGCTTTATGGAAATTTGATTATTTCTCCCCTCGACTCTTGTTAATGAAATTAAAAGACACTGATCATTTTTATTTTATTAGAAGATATTGAATTTCTCTTTCTGATCTCAATGCAGTGGATATCCAACTTTAAAGATATTTATGCATGGTGTTCCAACAGAATATTATGGACCAAGAAAAGCAGATTTACTTGTACGATTCTTGAAGAAGTTTGTTGCTGCTGATGTGGCCATACTCAATTCTGATTCAGCCATTAGTGAATTTGTTGAAGCAGCCGGCACTAGTTTCCCTATATTTATAGGCTTTGGTTTGAATGAATCTGCCATATCACATTT</genome_strand>
        <mrna_strand>TTCATCACGGCGGCGGAGTCGGAACATCTGAAGCAACAGTTGGGCATAGACAGCGGTAAAGTATTGGAACTTGATGAATCTAACTTTGATGCTGCAATTTCCAGTTTTGATTATATTTTGGTCGATTTCTACGCTCCTTGGTGTGGTCACTGCAAACGACTTGCACCTCAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGACAAAGCTGCTAGCATACTTGCTGATTTGAAGAAGCCCATAAGTATTGCAAAAATAGATGCTGACAAGTACAAACGTGTTGGTTCAAAATATGGCATTGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGATATCCAACTTTAAAGATATTTATGCATGGTGTTCCAACAGAATATTATGGACCAAGAAAAGCAGATTTACTTGTACGATTCTTGAAGAAGTTTGTTGCTGCTGATGTGGCCATACTCAATTCTGATTCAGCCATTAGTGAATTTGTTGAAGCAGCCGGCACTAGTTTCCCTATATTTATAGGCTTTGGTTTGAATGAATCTGCCATATCACATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E306048" ref_strand="+" ref_description="SGN-E306048 [cLEY-13-E21]">
      <seq>tttcacggtcgttcatcacggcggcggagtcggaacagcagaagcaacagttgggcatagacagcggtaaagtattggaacttgatgaatctaactttgatgctgcaatttccagttttgattatattttggtcgatttctacgctccttggtgtggtcactgcaaacgacttgcacctcagttggacaaagctgctagcatacttgctgatttgaagaagcccataagtattgcaaaaatagatgctgacaagtacaaacgtgttggttcaaaatatggcattgatggatatccaactttaaagatatttatgcatggtgttccaacagaatattatggaccaagaaaagcagatttacttgtacgattcttgaagaagtttgttgctgctgatgtggccatactcaattctgattcagccattagtgaatttgttgaagcagccggcactagtttccctatatttataggctttggtttgaatgaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0132E21.2" temp_strand="-" temp_description="C06SLm0132E21.2  AC211087.2 htgs_phase:3 submitted_to_sgn_as:C06SLm0132E21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="19645" stop="16306"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19345" g_stop="19164" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="182" r_length="182" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19163" i_stop="17911" i_length="1253">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.859" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17910" g_stop="17807" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="286" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17806" i_stop="16809" i_length="998">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16808" g_stop="16606" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="489" r_length="203" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0132E21.2" gen_strand="-" ref_id="SGN-E306048" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>489</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0132E21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E306048" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19345" e_stop="19164"/>
          <exon e_start="17910" e_stop="17807"/>
          <exon e_start="16808" e_stop="16606"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCACGGCCGTTCATCACGGCGGCGGAGTCGGAACAGCAGAAGCAACAGTTGGGCATAGACAGCGGTAAAGTATTGGAACTTGATGAATCTAACTTTGATGCTGCAATTTCCAGTTTTGATTATATTTTGGTCGATTTCTACGCTCCTTGGTGTGGTCACTGCAAACGACTTGCACCTCAGGTCTATTTCCTTTACTCAGTGTTGTTTATTTCTTTTGAAAGTATATAGTAGTGACCTCTACTTTTAAGAGATCTTACTCGAATGTTGTAGAAGCAGTTAACTTTCTAAGTTACGATTGTAAATGTATAACTGCAATAGATAAGATTGGGTTTCTTTACTTCAACTGTGAGTAAATCAGGTATGCGAGATAATTGATCAAATTACTAAGCAGAAAAGCCAGTGAGTTGAATGAATTAAGATCTGAAAACTAGAATAAGCATATACCTAGTTTTATGATACGTTTGCTGGGATATGTAATCTAAATTAGTATTAAAAATAAACTTTATTTAACAATGGTGGTGTCTGGCCAGCTTGTATGTATCCACTATTCATATCCACCAGCACAACTACTGAGTGACTTAGGCCACCAAGCTTAGGCGAAGGTAGAAATCTGATCTTTTTTTTTTTTTGGTCTTTGTCTTTGTTGGGTTTTGAACTCTGATCTATGAGATTTGCACCCAGTTCATGGACCACTAGGCCATATACTTAGGTGCGAAATTAGACTAAAAAGCATAGACGGACTAATTTTGCACTGTTGATGACGTAGATTCAGAACCATAAGGTTTCATGTTATAATCCCATCAGAAGTAAAGAAACACAAGGTGATTTATTGCCATGCGTCCTAACCTTTGGCGGACAAAGAAAAAAACTACCAAAAAAGTTGTGTTTCTACCTTAATCGATAAAGGACTCTTCAATTAACTTCAAAAAGGTTGATTGCTTCTCCAATGAAAAGTTATCTAGACTCTATATTGATTATGTCATTTGGCCAATTCCTAGATTCGGATATCCATACATTTTGTGAAAGTAATTTTTACTATAAATGCTTCCTAAGTATGTTTTGTGCAACCATTGTTATCAGATCTTTCTTTAGGGGGGTAGTTGGTTGGCCGCATCATCAAAATAATCTCCTTATAAAGTCCACATACCCACATGACCAACACAGTGTCTGATTGAACTCATAAGAACAAATAATCTCCGATTAAGTAATGAACTGTTTGATTGATATGGTATTAAGCTTAAGATCACATATTTTTTGCGAGAATCTATGTTTATCTTATCTATCTCTGTTAGATGACTCCCCCACCCCACCCCCCACCCAACCCGCGCGGCGACCACCACGCTCAGATTCATTTAATATGCACATTTCTCTGCGCAAGAATTGAATTCTATGTGATGCGTGGTATCAATCTGATGAATTTAAGTTCGTTGCAGTTGGACAAAGCTGCTAGCATACTTGCTGATTTGAAGAAGCCCATAAGTATTGCAAAAATAGATGCTGACAAGTACAAACGTGTTGGTTCAAAATATGGCATTGAGTATGTGTACTTTTAGCCTTATCACTACATCGTTTTTCTGATATTAGTTTTACAATGTATGATCTGCTTCCGTTTAATAAGGTTTTCAAGAACTCAAAAGAAAGGAGGTATTCATTTGTTTTTCTGATAGTGATCACAACTGTTTGCTTTAAAATTGGATTTCATTTTTACTCTCTTAGGTTGACCATATAGGCAATTTGATTCGTATTCACCTGTGTAAAAGAAGATGATGTGTTTAAGTAAAGGAGTTACAAGTTACAACAGAAGTTTGAAAAGCAAAAAATGTAGATGCTGATAGGTCGTTGAGGGCCCAGCCACATCTATCTTTCTTTGTCCGTACGTCTGCCACGTCCTCTTTTTCCTTTCCTTTACCTTAAACCTCCATTAATTCTACCACTGATAATAATCTGATCTCCTTTGTTCCTGTCCTCTCTCAATCTTGGATCTCTCCTTCATCAATATTGTTCCTTCCCTCTCTTTGTCTAGGATGTACTTATATGGTGCTGATACGTCTGCATATGTGCTGGAGTAGGAAGTAGTATCTTTAGCTAAGTCTGTTGGAGAGGCAGAGTAGCCAGGTGACATACACGGAGAGAGTGTAATCAGGATAGTTGGAATTGATGGACAAAAGAGATGACTAGCTGGACGGGGATTGAGCTTTTTAAGTGGGAAGACTTGAATTTGGGTTCTGATCTACTTTCTGTACCGTCTCTATTTCTAATGAAGCTGGATTACCCCAAGAGTTCACCTGTCGTGTAATTCAATATGTTACTTTTTTTCTGCAAGAGAGCACTGAAAAGCGTCGAAGTGAAGATTTATTAGATGTTATTTGCTCTCCCTTAAACAAATAAAACAAATATAATGCTGAGCTGCAGGAACACATGCTTTATGGAAATTTGATTATTTCTCCCCTCGACTCTTGTTAATGAAATTAAAAGACACTGATCATTTTTATTTTATTAGAAGATATTGAATTTCTCTTTCTGATCTCAATGCAGTGGATATCCAACTTTAAAGATATTTATGCATGGTGTTCCAACAGAATATTATGGACCAAGAAAAGCAGATTTACTTGTACGATTCTTGAAGAAGTTTGTTGCTGCTGATGTGGCCATACTCAATTCTGATTCAGCCATTAGTGAATTTGTTGAAGCAGCCGGCACTAGTTTCCCTATATTTATAGGCTTTGGTTTGAATGAAT</genome_strand>
        <mrna_strand>TTTCACGGTCGTTCATCACGGCGGCGGAGTCGGAACAGCAGAAGCAACAGTTGGGCATAGACAGCGGTAAAGTATTGGAACTTGATGAATCTAACTTTGATGCTGCAATTTCCAGTTTTGATTATATTTTGGTCGATTTCTACGCTCCTTGGTGTGGTCACTGCAAACGACTTGCACCTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGACAAAGCTGCTAGCATACTTGCTGATTTGAAGAAGCCCATAAGTATTGCAAAAATAGATGCTGACAAGTACAAACGTGTTGGTTCAAAATATGGCATTGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGATATCCAACTTTAAAGATATTTATGCATGGTGTTCCAACAGAATATTATGGACCAAGAAAAGCAGATTTACTTGTACGATTCTTGAAGAAGTTTGTTGCTGCTGATGTGGCCATACTCAATTCTGATTCAGCCATTAGTGAATTTGTTGAAGCAGCCGGCACTAGTTTCCCTATATTTATAGGCTTTGGTTTGAATGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E328281" ref_strand="+" ref_description="SGN-E328281 [cTOC-21-F14]">
      <seq>ttttggtttcacggccgttcatcacggcggcggagtcggaacagcagaagcaacagttgggcatagacagcggtaaagtattggaacttgatgaatctaactttgatgctgcaatttccagttttgattatattttggtcgatttctacgctccttggtgtggtcactgcaaacgacttgcacctcagttggacaaagctgctagcatact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0132E21.2" temp_strand="-" temp_description="C06SLm0132E21.2  AC211087.2 htgs_phase:3 submitted_to_sgn_as:C06SLm0132E21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="19651" stop="17588"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19351" g_stop="19164" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="188" r_length="188" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19163" i_stop="17911" i_length="1253">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.859" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17910" g_stop="17888" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="211" r_length="23" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0132E21.2" gen_strand="-" ref_id="SGN-E328281" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>211</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0132E21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E328281" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19351" e_stop="19164"/>
          <exon e_start="17910" e_stop="17888"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGGTTTCACGGCCGTTCATCACGGCGGCGGAGTCGGAACAGCAGAAGCAACAGTTGGGCATAGACAGCGGTAAAGTATTGGAACTTGATGAATCTAACTTTGATGCTGCAATTTCCAGTTTTGATTATATTTTGGTCGATTTCTACGCTCCTTGGTGTGGTCACTGCAAACGACTTGCACCTCAGGTCTATTTCCTTTACTCAGTGTTGTTTATTTCTTTTGAAAGTATATAGTAGTGACCTCTACTTTTAAGAGATCTTACTCGAATGTTGTAGAAGCAGTTAACTTTCTAAGTTACGATTGTAAATGTATAACTGCAATAGATAAGATTGGGTTTCTTTACTTCAACTGTGAGTAAATCAGGTATGCGAGATAATTGATCAAATTACTAAGCAGAAAAGCCAGTGAGTTGAATGAATTAAGATCTGAAAACTAGAATAAGCATATACCTAGTTTTATGATACGTTTGCTGGGATATGTAATCTAAATTAGTATTAAAAATAAACTTTATTTAACAATGGTGGTGTCTGGCCAGCTTGTATGTATCCACTATTCATATCCACCAGCACAACTACTGAGTGACTTAGGCCACCAAGCTTAGGCGAAGGTAGAAATCTGATCTTTTTTTTTTTTTGGTCTTTGTCTTTGTTGGGTTTTGAACTCTGATCTATGAGATTTGCACCCAGTTCATGGACCACTAGGCCATATACTTAGGTGCGAAATTAGACTAAAAAGCATAGACGGACTAATTTTGCACTGTTGATGACGTAGATTCAGAACCATAAGGTTTCATGTTATAATCCCATCAGAAGTAAAGAAACACAAGGTGATTTATTGCCATGCGTCCTAACCTTTGGCGGACAAAGAAAAAAACTACCAAAAAAGTTGTGTTTCTACCTTAATCGATAAAGGACTCTTCAATTAACTTCAAAAAGGTTGATTGCTTCTCCAATGAAAAGTTATCTAGACTCTATATTGATTATGTCATTTGGCCAATTCCTAGATTCGGATATCCATACATTTTGTGAAAGTAATTTTTACTATAAATGCTTCCTAAGTATGTTTTGTGCAACCATTGTTATCAGATCTTTCTTTAGGGGGGTAGTTGGTTGGCCGCATCATCAAAATAATCTCCTTATAAAGTCCACATACCCACATGACCAACACAGTGTCTGATTGAACTCATAAGAACAAATAATCTCCGATTAAGTAATGAACTGTTTGATTGATATGGTATTAAGCTTAAGATCACATATTTTTTGCGAGAATCTATGTTTATCTTATCTATCTCTGTTAGATGACTCCCCCACCCCACCCCCCACCCAACCCGCGCGGCGACCACCACGCTCAGATTCATTTAATATGCACATTTCTCTGCGCAAGAATTGAATTCTATGTGATGCGTGGTATCAATCTGATGAATTTAAGTTCGTTGCAGTTGGACAAAGCTGCTAGCATACT</genome_strand>
        <mrna_strand>TTTTGGTTTCACGGCCGTTCATCACGGCGGCGGAGTCGGAACAGCAGAAGCAACAGTTGGGCATAGACAGCGGTAAAGTATTGGAACTTGATGAATCTAACTTTGATGCTGCAATTTCCAGTTTTGATTATATTTTGGTCGATTTCTACGCTCCTTGGTGTGGTCACTGCAAACGACTTGCACCTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGACAAAGCTGCTAGCATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E542673" ref_strand="+" ref_description="SGN-E542673 [TUS-64-B13]">
      <seq>cgcaaacctctagaacaatatctgcccctttccggacacaaaattaggcggaaattgtggcgggacgtcgcactagtctgttttcaaaactcgttttggtggaagaaaaccccttagttagtccaaaggttctatcctaaaagttttgatgataacaaacttatagcgttcaaatcttgtgattgtagtgataaccagaaactcacaagtaagtccacattcaaagccaagattggatcaaaagtatataatcaattttttgctgaattatagtcaaccacaggtggtatgttacagtcatggttgctatccatccggacttatattaatcattacatgaaaaccaactgatggacagacagaaagttgtttggaaggttatctgcaatatttgacaatcatcagtaagtcaaaggaattggttacataaggctgagtgtttccattggcaaatgcttaaaccccggtgcaatcagaacaagccaggatgaagtggtatggtgaccttagggggactgagagacatggaaactatggttacccacaggtaaacttgtatggccttgagggaaagtcttaaagatttgtttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0132E21.2" temp_strand="+" temp_description="C06SLm0132E21.2  AC211087.2 htgs_phase:3 submitted_to_sgn_as:C06SLm0132E21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="29090" stop="30280"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29390" g_stop="29980" g_length="591"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="591" r_length="591" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0132E21.2" gen_strand="+" ref_id="SGN-E542673" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>591</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0132E21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E542673" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29390" e_stop="29980"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCAAACCTCTAGAACAATATCTGCCCCTTTCCGGACACAAAATTAGGCGGAAATTGTGGCGGGACGTCGCACTAGTCTGTTTTCAAAACTCGTTTTGGTGGAAGAAAACCCCTTAGTTAGTCCAAAGGTTCTATCCTAAAAGTTTTGATGATAACAAACTTATAGCGTTCAAATCTTGTGATTGTAGTGATAACCAGAAACTCACAAGTAAGTCCACATTCAAAGCCAAGATTGGATCAAAAGTATATAATCAATTTTTTGCTGAATTATAGTCAACCACAGGTGGTATGTTACAGTCATGGTTGCTATCCATCCGGACTTATATTAATCATTACATGAAAACCAACTGATGGACAGACAGAAAGTTGTTTGGAAGGTTATCTGCAATATTTGACAATCATCAGTAAGTCAAAGGAATTGGTTACATAAGGCTGAGTGTTTCCATTGGCAAATGCTTAAACCCCGGTGCAGTCAGAACAAGCCAGGATGAAGTGGTATGGTGACCTTAGGGGGACTGAGAGACATGGAAACTAGGTTTACCCACAGGCAGACTTGTATGGCCTTGAGGAGAAGTCTTAAAGATTTGTTTG</genome_strand>
        <mrna_strand>CGCAAACCTCTAGAACAATATCTGCCCCTTTCCGGACACAAAATTAGGCGGAAATTGTGGCGGGACGTCGCACTAGTCTGTTTTCAAAACTCGTTTTGGTGGAAGAAAACCCCTTAGTTAGTCCAAAGGTTCTATCCTAAAAGTTTTGATGATAACAAACTTATAGCGTTCAAATCTTGTGATTGTAGTGATAACCAGAAACTCACAAGTAAGTCCACATTCAAAGCCAAGATTGGATCAAAAGTATATAATCAATTTTTTGCTGAATTATAGTCAACCACAGGTGGTATGTTACAGTCATGGTTGCTATCCATCCGGACTTATATTAATCATTACATGAAAACCAACTGATGGACAGACAGAAAGTTGTTTGGAAGGTTATCTGCAATATTTGACAATCATCAGTAAGTCAAAGGAATTGGTTACATAAGGCTGAGTGTTTCCATTGGCAAATGCTTAAACCCCGGTGCAATCAGAACAAGCCAGGATGAAGTGGTATGGTGACCTTAGGGGGACTGAGAGACATGGAAACTATGGTTACCCACAGGTAAACTTGTATGGCCTTGAGGGAAAGTCTTAAAGATTTGTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E301564" ref_strand="+" ref_description="SGN-E301564 [cLEW-23-H7]">
      <seq>ggaattcggcacgaggcgcaaacctctagaacaatatctgcccctttccggacacaaaattaggcggaaattgtggcgggacgtcgcactagtctgttttcaaaactcgttttggtggaagaaaaccccttagttagtccaaaggttctatcctaaaagttttgatgataacaaacttatagcgttcaaatcttgtgattgtagtgataaccagaaactcacaagtaagtccacattcaaagccaagattggatcaaaagtatataatcaattttttgctgaattatagtcaaccacaggtggtatgttacagtcatggttgctatccatccggacttatattaatcattacatgaaaaccaactgatggacagacagaaagttgtttggaaggttatctgcaatatttgacaatcatcagtaagtcaaaggaattggttacataaggctgagtgtttccattggcaaatgcttaaaccccggtgcagtcagaacaagccaggatgaagtgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0132E21.2" temp_strand="+" temp_description="C06SLm0132E21.2  AC211087.2 htgs_phase:3 submitted_to_sgn_as:C06SLm0132E21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="29090" stop="30185"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29390" g_stop="29885" g_length="496"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="512" r_length="496" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0132E21.2" gen_strand="+" ref_id="SGN-E301564" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>496</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0132E21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E301564" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29390" e_stop="29885"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCAAACCTCTAGAACAATATCTGCCCCTTTCCGGACACAAAATTAGGCGGAAATTGTGGCGGGACGTCGCACTAGTCTGTTTTCAAAACTCGTTTTGGTGGAAGAAAACCCCTTAGTTAGTCCAAAGGTTCTATCCTAAAAGTTTTGATGATAACAAACTTATAGCGTTCAAATCTTGTGATTGTAGTGATAACCAGAAACTCACAAGTAAGTCCACATTCAAAGCCAAGATTGGATCAAAAGTATATAATCAATTTTTTGCTGAATTATAGTCAACCACAGGTGGTATGTTACAGTCATGGTTGCTATCCATCCGGACTTATATTAATCATTACATGAAAACCAACTGATGGACAGACAGAAAGTTGTTTGGAAGGTTATCTGCAATATTTGACAATCATCAGTAAGTCAAAGGAATTGGTTACATAAGGCTGAGTGTTTCCATTGGCAAATGCTTAAACCCCGGTGCAGTCAGAACAAGCCAGGATGAAGTGG</genome_strand>
        <mrna_strand>CGCAAACCTCTAGAACAATATCTGCCCCTTTCCGGACACAAAATTAGGCGGAAATTGTGGCGGGACGTCGCACTAGTCTGTTTTCAAAACTCGTTTTGGTGGAAGAAAACCCCTTAGTTAGTCCAAAGGTTCTATCCTAAAAGTTTTGATGATAACAAACTTATAGCGTTCAAATCTTGTGATTGTAGTGATAACCAGAAACTCACAAGTAAGTCCACATTCAAAGCCAAGATTGGATCAAAAGTATATAATCAATTTTTTGCTGAATTATAGTCAACCACAGGTGGTATGTTACAGTCATGGTTGCTATCCATCCGGACTTATATTAATCATTACATGAAAACCAACTGATGGACAGACAGAAAGTTGTTTGGAAGGTTATCTGCAATATTTGACAATCATCAGTAAGTCAAAGGAATTGGTTACATAAGGCTGAGTGTTTCCATTGGCAAATGCTTAAACCCCGGTGCAGTCAGAACAAGCCAGGATGAAGTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E542672" ref_strand="+" ref_description="SGN-E542672 [TUS-64-B13](-)">
      <seq>ataatgagttttagttcattataatgtcttgcacgaaaggactcttggagttctaaatttgcattgaggcagatgcagggaacaatccaggttacttctcatgttttttggtggaaggaaatatcacctgcatgattttttgagggtagaactaaaatttgaaggtgaaaaaaaaaacagaattatcctaaaatctttagaagaacacaaatttgaattttctgttacaatttctgagaggaaaaaaaaacatggttgtacatgttgaattcatctttctcattatgtcatccttttcaaggcaaaatctttgaagtcgagatcatttaatcctgtgtgaatttacgagttgtctccaagtgataaacattgttagcttttagtttctgttaggtgatagaatagtgtattgaagtatgataacacaacaactgttgttgaactcaataccatctaagttttcttattgtctttgtccactctattttatttcgtaggactgggcaggtataggtgcagatggaggaggagctagactttaatctatcccaaaacactttcttcgtgtgtttcaaaaggttataaaacaaaatatgataccattgattggaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0132E21.2" temp_strand="+" temp_description="C06SLm0132E21.2  AC211087.2 htgs_phase:3 submitted_to_sgn_as:C06SLm0132E21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="30136" stop="31346"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30436" g_stop="31040" g_length="605"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="606" r_length="606" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="611" polyA_stop="620"/>
      <MATCH_line gen_id="C06SLm0132E21.2" gen_strand="+" ref_id="SGN-E542672" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>605</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0132E21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E542672" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30436" e_stop="31040"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAATGAGTTTTAGTTCATTATAATGTCTTGCACGAAAGGACTCTTGGAGTTCTAAATTTGCATTGAGGCAGATGCAGGGAACAATCCAGGTTACTTCTCATGTTTTTTGGTGGAAGGAAATATCACCTGCATGA-TTTTTGAGGGTAGAACTAAAATTTGAAGGTGAAAAAAAAAACAGAATTATCCTAAAATCTTTAGAAGAACACAAATTTGAATTTTCTGTTACAATTTCTGAGAGGAAAAAAAAACATGGTTGTACATGTTGAATTCATCTTTCTCATTATGTCATCCTTTTCAAGGCAAAATCTTTGAAGTCGAGATCATTTAATCCTGTGTGAATTTACGAGTTGTCTCCAAGTGATAAACATTGTTAGCTTTTAGTTTCTGTTAGGTGATAGAATAGTGTATTGAAGTATGATAACACAACAACTGTTGTTGAACTCAATACCATCTAAGTTTTCTTATTGTCTTTGTCCACTCTATTTTATTTCGTAGGACTGGGCAGGTATAGGTGCAGATGGAGGAGGAGCTAGACTTTAATCTATCCCAAAACACTTTCTTCGTGTGTTTCAAAAGGTTATAAAACAAAATATGATACCATTGA</genome_strand>
        <mrna_strand>ATAATGAGTTTTAGTTCATTATAATGTCTTGCACGAAAGGACTCTTGGAGTTCTAAATTTGCATTGAGGCAGATGCAGGGAACAATCCAGGTTACTTCTCATGTTTTTTGGTGGAAGGAAATATCACCTGCATGATTTTTTGAGGGTAGAACTAAAATTTGAAGGTGAAAAAAAAAACAGAATTATCCTAAAATCTTTAGAAGAACACAAATTTGAATTTTCTGTTACAATTTCTGAGAGGAAAAAAAAACATGGTTGTACATGTTGAATTCATCTTTCTCATTATGTCATCCTTTTCAAGGCAAAATCTTTGAAGTCGAGATCATTTAATCCTGTGTGAATTTACGAGTTGTCTCCAAGTGATAAACATTGTTAGCTTTTAGTTTCTGTTAGGTGATAGAATAGTGTATTGAAGTATGATAACACAACAACTGTTGTTGAACTCAATACCATCTAAGTTTTCTTATTGTCTTTGTCCACTCTATTTTATTTCGTAGGACTGGGCAGGTATAGGTGCAGATGGAGGAGGAGCTAGACTTTAATCTATCCCAAAACACTTTCTTCGTGTGTTTCAAAAGGTTATAAAACAAAATATGATACCATTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E372331" ref_strand="+" ref_description="SGN-E372331 [TUS-30-H15](-)">
      <seq>cacaaagaaaagccttttgatgaagacgatagcgatgatgatgatgccgatgacaaagaaaatgacccatcaaagagtcatcatcatggggatcattgctgttctaaacaggatcatggaggagaagctagtacgagtttttcggaagatcactgatgtatttgacttgtaagtttgttgaactttttgttaagaaggaaaaaaatgttatttttggggtaaatttgttaattggtattatttgagatcttctgttgttgggaatctgattgaaatttatgtttcgatgacatgaagttgaacaattgatattagtgttacttcttatactattctgcttgtaagaaaaaaatttcatttttgaagtgaatttgagtatttggtatcatggaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0132E21.2" temp_strand="-" temp_description="C06SLm0132E21.2  AC211087.2 htgs_phase:3 submitted_to_sgn_as:C06SLm0132E21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="34172" stop="33178"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33872" g_stop="33491" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="382" r_length="382" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="392" polyA_stop="401"/>
      <MATCH_line gen_id="C06SLm0132E21.2" gen_strand="-" ref_id="SGN-E372331" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>382</cumulative_length_of_scored_exons>
        <coverage percentage="0.953" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0132E21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E372331" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33872" e_stop="33491"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAAAGAAAAGCCTTTTGATGAAGACGATAGCGATGATGATGATGCCGATGACAAAGAAAATGACCCATCAAAGAGTCATCATCATGGGGATCATTGCTGTTCTAAACAGGATCATGGAGGAGAAGCTAGTACGAGTTTTTCGGAAGATCACTGATGTATTTGACTTGTAAGTTTGTTGAACTTTTTGTTAAGAAGGAAAAAAATGTTATTTTTGGGGTAAATTTGTTAATTGGTATTATTTGAGATCTTCTGTTGTTGGGAATCTGATTGAAATTTATGTTTCGATGACATGAAGTTGAACAATTGATATTAGTGTTACTTCTTATACTATTCTGCTTGTAAGAAAAAAATTTCATTTTTGAAGTGAATTTGAGTATTTG</genome_strand>
        <mrna_strand>CACAAAGAAAAGCCTTTTGATGAAGACGATAGCGATGATGATGATGCCGATGACAAAGAAAATGACCCATCAAAGAGTCATCATCATGGGGATCATTGCTGTTCTAAACAGGATCATGGAGGAGAAGCTAGTACGAGTTTTTCGGAAGATCACTGATGTATTTGACTTGTAAGTTTGTTGAACTTTTTGTTAAGAAGGAAAAAAATGTTATTTTTGGGGTAAATTTGTTAATTGGTATTATTTGAGATCTTCTGTTGTTGGGAATCTGATTGAAATTTATGTTTCGATGACATGAAGTTGAACAATTGATATTAGTGTTACTTCTTATACTATTCTGCTTGTAAGAAAAAAATTTCATTTTTGAAGTGAATTTGAGTATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E285646" ref_strand="+" ref_description="SGN-E285646 [cLES-5-D9]">
      <seq>acaaagaaaagccttttgatgaagacgatagcgatgatgatgatgccgatgacaaagaaaatgacccatcaaagagtcatcatcatggggatcattgctgttctaaacaggatcatggaggagaagctagtacgagtttttcggaagatcactgatgtatttgacttgtaagtttgttgaactttttgttaagaaggaaaaaaatgttatttttggggtaaatttgttaattggtattatttgagatcttctgttgttgggaatctgattgaaatttatgtttcgatgacatgaagttgaacaattgatattagtgttacttcttatactattctgcttgtaagaaaaaaatttcatttttgaagtgaatttgagtatttggtatcattggaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0132E21.2" temp_strand="-" temp_description="C06SLm0132E21.2  AC211087.2 htgs_phase:3 submitted_to_sgn_as:C06SLm0132E21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="34171" stop="33178"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33871" g_stop="33491" g_length="381"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="381" r_length="381" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="392" polyA_stop="402"/>
      <MATCH_line gen_id="C06SLm0132E21.2" gen_strand="-" ref_id="SGN-E285646" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>381</cumulative_length_of_scored_exons>
        <coverage percentage="0.948" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0132E21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E285646" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33871" e_stop="33491"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAAGAAAAGCCTTTTGATGAAGACGATAGCGATGATGATGATGCCGATGACAAAGAAAATGACCCATCAAAGAGTCATCATCATGGGGATCATTGCTGTTCTAAACAGGATCATGGAGGAGAAGCTAGTACGAGTTTTTCGGAAGATCACTGATGTATTTGACTTGTAAGTTTGTTGAACTTTTTGTTAAGAAGGAAAAAAATGTTATTTTTGGGGTAAATTTGTTAATTGGTATTATTTGAGATCTTCTGTTGTTGGGAATCTGATTGAAATTTATGTTTCGATGACATGAAGTTGAACAATTGATATTAGTGTTACTTCTTATACTATTCTGCTTGTAAGAAAAAAATTTCATTTTTGAAGTGAATTTGAGTATTTG</genome_strand>
        <mrna_strand>ACAAAGAAAAGCCTTTTGATGAAGACGATAGCGATGATGATGATGCCGATGACAAAGAAAATGACCCATCAAAGAGTCATCATCATGGGGATCATTGCTGTTCTAAACAGGATCATGGAGGAGAAGCTAGTACGAGTTTTTCGGAAGATCACTGATGTATTTGACTTGTAAGTTTGTTGAACTTTTTGTTAAGAAGGAAAAAAATGTTATTTTTGGGGTAAATTTGTTAATTGGTATTATTTGAGATCTTCTGTTGTTGGGAATCTGATTGAAATTTATGTTTCGATGACATGAAGTTGAACAATTGATATTAGTGTTACTTCTTATACTATTCTGCTTGTAAGAAAAAAATTTCATTTTTGAAGTGAATTTGAGTATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E372332" ref_strand="+" ref_description="SGN-E372332 [TUS-30-H15]">
      <seq>acaaagaaaagccttttgatgaagacgatagcgatgatgatgatgccgatgacaaagaaaatgacccatcaaagagtcatcatcatggggatcattgctgttctaaacaggatcatggaggagaagctagtacgagtttttcggaagatcactgatgtatttgacttgtaagtttgttgaactttttgttaagaaggaaaaaaatgttatttttggggtaaatttgttaattggtattatttgagatcttctgttgttgggaatctgattgaaatttatgtttcgatgacatgaagttgaacaattgatattagtgttacttcttatactattctgcttgtaagaaaaaaatttcatttttgaagtgaatttgagtatttggtatcattggaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0132E21.2" temp_strand="-" temp_description="C06SLm0132E21.2  AC211087.2 htgs_phase:3 submitted_to_sgn_as:C06SLm0132E21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="34171" stop="33178"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33871" g_stop="33491" g_length="381"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="381" r_length="381" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="392" polyA_stop="402"/>
      <MATCH_line gen_id="C06SLm0132E21.2" gen_strand="-" ref_id="SGN-E372332" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>381</cumulative_length_of_scored_exons>
        <coverage percentage="0.948" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0132E21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E372332" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33871" e_stop="33491"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAAGAAAAGCCTTTTGATGAAGACGATAGCGATGATGATGATGCCGATGACAAAGAAAATGACCCATCAAAGAGTCATCATCATGGGGATCATTGCTGTTCTAAACAGGATCATGGAGGAGAAGCTAGTACGAGTTTTTCGGAAGATCACTGATGTATTTGACTTGTAAGTTTGTTGAACTTTTTGTTAAGAAGGAAAAAAATGTTATTTTTGGGGTAAATTTGTTAATTGGTATTATTTGAGATCTTCTGTTGTTGGGAATCTGATTGAAATTTATGTTTCGATGACATGAAGTTGAACAATTGATATTAGTGTTACTTCTTATACTATTCTGCTTGTAAGAAAAAAATTTCATTTTTGAAGTGAATTTGAGTATTTG</genome_strand>
        <mrna_strand>ACAAAGAAAAGCCTTTTGATGAAGACGATAGCGATGATGATGATGCCGATGACAAAGAAAATGACCCATCAAAGAGTCATCATCATGGGGATCATTGCTGTTCTAAACAGGATCATGGAGGAGAAGCTAGTACGAGTTTTTCGGAAGATCACTGATGTATTTGACTTGTAAGTTTGTTGAACTTTTTGTTAAGAAGGAAAAAAATGTTATTTTTGGGGTAAATTTGTTAATTGGTATTATTTGAGATCTTCTGTTGTTGGGAATCTGATTGAAATTTATGTTTCGATGACATGAAGTTGAACAATTGATATTAGTGTTACTTCTTATACTATTCTGCTTGTAAGAAAAAAATTTCATTTTTGAAGTGAATTTGAGTATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E745308" ref_strand="+" ref_description="SGN-E745308 [GI|47105770]">
      <seq>ggtaaaagaaaaaaagaaaaacactgagatctctatttagcacggagcagaagcgccatggcttcgtgctgttcattgagcttctcaacagtctcttcaaagcctaacaagccttactcatcaccaatttcttcttctcttgagctcccctttacttcccagttgccattttctaaaaaatattcactttattccaatcatacccttctccaaactcaatgccggaaaacccaatcaccggattgtcccagtttcttggttgtgggatctgcgaaaaagcaagaacctttgagggtaatgatatcgggagctcctgcttctggtaaaggaacgcaatgcgagctcattaccaagaagtacgatttggtgcatattgctgctggagatttattgagggctgaaattgctgcaggcactgaaaatgggaggagagcaaaggagtatatggataaaggacaattggtaccaaacgagatagttgtaacgatggtcaaagagcggttgatgtgtccagactctcaagaaaagggttggcttttagatggatatcctcggagcttgtctcaagcagtagctctcaaagagttccagccaaaccttttcattcttctggaagtacctgaagagatacttgttgagagagtggttggccgtagactagatcctgtaactgggagaatataccatttgaagtattctccgccagagaccgatgaaatcgctgcaaggcttacccagcgctttgatgatacagaagaaaaggtgaagctgcgtctgcacactcaccgtcaaaatgtggaatcagttctctcaatgtacaaagatactatattccaggtggacgggagcgtttccaaagaggaagtatttgctcaaattgatggtgcattaactcaacttcttgaagcaaaggagtgaagatttggaaccgtaatgtcatagagatcaggaaaaatctgcagaatgtaccatgtaatactcaggaggatcatcgaagacaaaagagtaacattgttggttgctatccctcttatacaaatgtatgaaatgtttatgtatatcgtatttgcttccaactatctatgtggatattcattgaatcagattcaaagtttactacaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0132E21.2" temp_strand="+" temp_description="C06SLm0132E21.2  AC211087.2 htgs_phase:3 submitted_to_sgn_as:C06SLm0132E21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="41533" stop="46375"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41832" g_stop="42089" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="258" r_length="258" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42090" i_stop="42404" i_length="315">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42405" g_stop="42503" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="357" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42504" i_stop="43589" i_length="1086">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43590" g_stop="43718" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="486" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43719" i_stop="43834" i_length="116">
            <donor d_prob="0.475" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43835" g_stop="43963" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="487" r_stop="615" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="43964" i_stop="44564" i_length="601">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="44565" g_stop="44711" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="616" r_stop="762" r_length="147" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="44712" i_stop="45101" i_length="390">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="45102" g_stop="45176" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="763" r_stop="837" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="45177" i_stop="45788" i_length="612">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="45789" g_stop="46075" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="838" r_stop="1124" r_length="287" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1125" polyA_stop="1139"/>
      <MATCH_line gen_id="C06SLm0132E21.2" gen_strand="+" ref_id="SGN-E745308" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1124</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0132E21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E745308" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41832" e_stop="42089"/>
          <exon e_start="42405" e_stop="42503"/>
          <exon e_start="43590" e_stop="43718"/>
          <exon e_start="43835" e_stop="43963"/>
          <exon e_start="44565" e_stop="44711"/>
          <exon e_start="45102" e_stop="45176"/>
          <exon e_start="45789" e_stop="46075"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTAAAAGAAAAAAAGAAAAACACTGAGATCTCTATTTAGCACGGAGCAGAAGCGCCATGGCTTCGTGCTGTTCATTGAGCTTCTCAACAGTCTCTTCAAAGCCTAACAAGCCTTACTCATCACCAATTTCTTCTTCTCTTGAGCTCCCCTTTACTTCCCAGTTGCCATTTTCTAAAAAATATTCACTTTATTCCAATCATACCCTTCTCCAAACTCAATGCCGGAAAACCCAATCACCGGATTGTCCCAGTTTCTTGGTACGTCTTGCAATTCTTTTGACACCCTTTTGATTTTCACGTTCAATTTTGAGTTTAGAAAAGTGAGCCCAGAATTTGAAATTAGTAATAGGTTGTATTGAACATAAATGTATATTGAAGAGTTTTACTACGCAGCTGTTGGTTTACAATATATTTCATGCTCAATCGAATGAGATGACTTGAAAGAGTTAGACTTTAGTTTGGGACTGAGATGTAGTTGATTGATTGTTTTTTTGGTATGGCTTTGTGTAGTGGCTGAGTTTTAGCCAAAAAGGGAAACTTGATTAGTGATTGAATTGTATTTTTGTGATTTAGGTTGTGGGATCTGCGAAAAAGCAAGAACCTTTGAGGGTAATGATATCGGGAGCTCCTGCTTCTGGTAAAGGAACGCAATGCGAGCTCATTACCAAGAAGGTAATGGTTCTTTTTTTTTTCTTCATAGGGACAAGTTGGTTGTTATGATCTTTTATGTTTGAATTATCTTTATGCTGTTCTATGTAGGTTTCTCTTTTTGGAATGGATGATGATCCATTGGGATTTTGGTTTTATAATTCTGAATATGAAATCTCTATTCTTGAAAGTTTATCTACTAATATAAATCGTCCCAATTTCCACTAATATGTGTGTTATAGACCAGGTTGTACAATATAGAGGTATACTTCCATTCATGACTTCTGACCATGGGTGTTTCTAAATTTGAGGACCAGTTTTTTACCATATTACTGGTATCATTCTACCCAGGACCTCTTATGACTTGACCCTTACTCCATTTGGTTCGTAGACTGATAACACAAGAACTGGTATGTGGGGATTGTTATACACTGATTGACAATACCGGCATGGTTAATACCAGTATTAGCTATGCATGTTGTATATCTAGTATAAGTCACAGGGTGATACACCTCTTTTACCACAGCCTAAAAAAGCAGAATTATCAGATTTATCTGCACTCTTGTAAACTAAAATCATCATGTAAATTTGTCCAGTTATCAGATTTGTCTTGAAAAGCATCTTACTAGCATCTGTTCAGCTGTTCCATATATTTACGTTATTTCCTTAGCATAACATGTATGTCTCCTATGTGTATTCTCTTACAATTCACTGGTACCTTGTTCCCTAGCCTCTTTATCTTGTTTATTATGAATTCTCATCTGGTTCCTCTAAATTCTCATTGGTGGGTTTGTAATATTTCCTTCAGCCGAAATTGTCCATATTATAATCAACTTTATCTTAATTATTAGCAAGTCCCTGCTACTTGAACTCACATTCTTCACATTTCTTGATTGATTTAGCTTTAGTTTGATTTCCATGCTCCTTATTCCTTCCCTTGTTTAACATGTAGTTGTAAAAAGGTATGTTGCTAGTAGCATTTGATGTTCCATTTCAAAAAATGTCTCTAGTTGCAGTCGATGTTAGTTGCTACCTTAATTACCCATTTTCCTTGTTATGTATTACCCTGTGAGAAGTAATAAATTGAATACCGTGAGCTCATATATGCAGTACGATTTGGTGCATATTGCTGCTGGAGATTTATTGAGGGCTGAAATTGCTGCAGGCACTGAAAATGGGAGGAGAGCAAAGGAGTATATGGATAAAGGACAATTGGTACCAAACGAGATAGTTGTAACGGTAGGTTTACCTGGCAAACTGGTTCCTGCTTTTGTTAGCATGCTATTTTAAAGGTTGAAAGAGATCATTAGAAAGAGTGTTTTATTCATATGTGATTTGTTGATTCCTTGTTTTAGATGGTCAAAGAGCGGTTGATGTGTCCAGACTCTCAAGAAAAGGGTTGGCTTTTAGATGGATATCCTCGGAGCTTGTCTCAAGCAGTAGCTCTCAAAGAGTTCCAGCCAAACCTTTTCATTCTTCTGGAAGTGAGGTTCTGCTATTGATATCCTCTGATTGTGTTCTCAATCTCTTTCTAGTTAAAGCCTTAAGAGGATGAAAAGGATCAACATAGAGTATCCTGCATTTAAAATTTACCTGAAAAAATCTTTGAACGGGAAAACTGTGCTTTTGGTCTGTGAAAACCTAATTTTAGCCTTCAATTGAGAGAACTGTGCGCTTTTGGTTCCTCCTCTAGCATATTTCCCTACAAGAGTCAGATTACTTCCTTAAAATGCAAAAGAGTATCAAAATAACTTTCTTAGCATAAAAGGTGAATAGTTGTATGGTTTAATAGTTGTACTTTCATGGAATTTATCAGTTGAGGGACCAAAAGCTGATACTATCAGTTGGAGGTTTAGTGGGCTTGACTGAATACTGTGATTCGTTAGTACCAAGATTACAACTTACAAATAACCAAAAAAAAATTATTTTTTTCCTTATTTTAAATATGATTAGTTTTTTCTGATTCTTTTTTGTTTCACATGTCGTATATTAAACTGCAAGAGGTTTCAGAATAAATGCACCTTCATCGAGTCATCAACCAATGTTTTAACTTTTAACAGGAACACGTTATATTGTAAATGATAGGTACCTGAAGAGATACTTGTTGAGAGAGTGGTTGGCCGTAGACTAGATCCTGTAACTGGGAGAATATACCATTTGAAGTATTCTCCGCCAGAGACCGATGAAATCGCTGCAAGGCTTACCCAGCGCTTTGATGATACAGAAGAAAAGGCATGTTAATGCATGAATACGTACATTATTGTTGCTACAACTGCTGTAGGGCTTTTCCTTTTGTATGAAGCTTTTAAATCACGTAAACTTTTTTAATTCTTATTTGGTGGAAGCCTACCGTTTGTCCCATTGGTCATTTCTTGACCTTCTAATCAAACCATTTTAATCTATTCTCCTCCTGGAAATTTTGTTGCAGGTCTCGAAATTTCCATTTTCAACTAAATCTTTCTTTTAGCTATTTCCTTTATCATTCTTGCTGTCCTTTTCCCTTGCTTACTCAAGTCGCTTTGTAGATAACTGACTTAAGTATAGGTTTCTATAACATTATAAATAATGTTGTGTGATCAGCTTCATTTTTGTCTAATTTCTTTTTCAATTTACCGTTTACAGGTGAAGCTGCGTCTGCACACTCACCGTCAAAATGTGGAATCAGTTCTCTCAATGTACAAAGATACTATATTCCAGGTATTCTTTTTGCCACAGATGTGGTGCAGTTGCTTCACTCGGGAATGCAGATTGAAACACTCATCAGTCACCATCAAAGTGTGGAATCATTCCTTATATACTTGATTCATAGTTTATTGGGTTGTTTGATGGTTTACAAGGTCTTGGTTAACAGGAATATAGTCCATAAAAGACAATGTGGAAGGGACTCGGTGGAAATGGTTCGATGAGAAAGTAGTTTGGTTTTCTATTTGGCAAAAGAACAATGATATGGTTATAAAATTTCGTTGTTTGACATGTAGGTTACAAAATGATTACTTTAAATTATCTTCAGTTCATCCAGGTCATCCTTCCTCATAACAGTTGTAAAACAAAGGAAAGCCAAAGCAAAAGGGCTATACATCCTCTTTTATCTTAAAATTTACTCAATAAGCTAAAGGAAGAGTAAATCCTTTTGAGTATTACATTCATACTAATCAATCTGGGGGGAAATATACTTAATCAAGGACTCCCCTTCCCTCTTCAATGAACAAGGATACTGTATGTTCTTTCTTTCCATACGCGTGCATGATCGTGTTGTTATCATTTCCTGGTGTTAAAACTTCCATCTTCTCTGAGCTATTTTAATTTCAGGTGGACGGGAGCGTTTCCAAAGAGGAAGTATTTGCTCAAATTGATGGTGCATTAACTCAACTTCTTGAAGCAAAGGAGTGAAGATTTGGAACCGTAATGTCATAGAGATCAGGAAAAATCTGCAGAATGTACCATGTAATACTCAGGAGGATCATCGAAGACAAAAGAGTAACATTGTTGGTTGCTATCCCTCTTATACAAATGTATGAAATGTTTATGTATATCGTATTTGCTTCCAACTATCTATGTGGATATTCATTGAATCAGATTCAAAGTTTACTACAAAA</genome_strand>
        <mrna_strand>GGTAAAAGAAAAAAAGAAAAACACTGAGATCTCTATTTAGCACGGAGCAGAAGCGCCATGGCTTCGTGCTGTTCATTGAGCTTCTCAACAGTCTCTTCAAAGCCTAACAAGCCTTACTCATCACCAATTTCTTCTTCTCTTGAGCTCCCCTTTACTTCCCAGTTGCCATTTTCTAAAAAATATTCACTTTATTCCAATCATACCCTTCTCCAAACTCAATGCCGGAAAACCCAATCACCGGATTGTCCCAGTTTCTTG...........................................................................................................................................................................................................................................................................................................................GTTGTGGGATCTGCGAAAAAGCAAGAACCTTTGAGGGTAATGATATCGGGAGCTCCTGCTTCTGGTAAAGGAACGCAATGCGAGCTCATTACCAAGAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACGATTTGGTGCATATTGCTGCTGGAGATTTATTGAGGGCTGAAATTGCTGCAGGCACTGAAAATGGGAGGAGAGCAAAGGAGTATATGGATAAAGGACAATTGGTACCAAACGAGATAGTTGTAACG....................................................................................................................ATGGTCAAAGAGCGGTTGATGTGTCCAGACTCTCAAGAAAAGGGTTGGCTTTTAGATGGATATCCTCGGAGCTTGTCTCAAGCAGTAGCTCTCAAAGAGTTCCAGCCAAACCTTTTCATTCTTCTGGAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCTGAAGAGATACTTGTTGAGAGAGTGGTTGGCCGTAGACTAGATCCTGTAACTGGGAGAATATACCATTTGAAGTATTCTCCGCCAGAGACCGATGAAATCGCTGCAAGGCTTACCCAGCGCTTTGATGATACAGAAGAAAAG......................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGCTGCGTCTGCACACTCACCGTCAAAATGTGGAATCAGTTCTCTCAATGTACAAAGATACTATATTCCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGACGGGAGCGTTTCCAAAGAGGAAGTATTTGCTCAAATTGATGGTGCATTAACTCAACTTCTTGAAGCAAAGGAGTGAAGATTTGGAACCGTAATGTCATAGAGATCAGGAAAAATCTGCAGAATGTACCATGTAATACTCAGGAGGATCATCGAAGACAAAAGAGTAACATTGTTGGTTGCTATCCCTCTTATACAAATGTATGAAATGTTTATGTATATCGTATTTGCTTCCAACTATCTATGTGGATATTCATTGAATCAGATTCAAAGTTTACTACAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E369888" ref_strand="+" ref_description="SGN-E369888 [TUS-26-J11]">
      <seq>aaaagaaaaacactgagatctctatttagcacggagcagaagcgccatggcttcgtgctgttcattgagcttctcaacagtctcttcaaagcctaacaagccttactcatcaccaatttcttcttctcttgagctcccctttacttcccagttgccattttctaaaaaatattcactttattccaatcatacccttctccaaactcaatgccggaaaacccaatcaccggattgtcccagtttcttggttgtgggatctgcgaaaaagcaagaacctttgagggtaatgatatcgggagctcctgcttctggtaaaggaacgcaatgcgagctcattaccaagaagtacgatttggtgcatattgctgctggagatttattgagggctgaaattgctgcaggcactgaaaatgggaggagagcaaaggagtatatggataaaggacaattggtaccaaacgagatagttgtaacgatggtcaaagagcggttgatgtgtccagactctcaagaaaagggttggcttttagatggatatcctcggagcttgtctcaagcagtagctctcagagagttccagccaaaccttttcattcttctggaagtccctgaagagatacttgttgagagagtggttggccgtagactagatcctgtaactgggagaaataccatttgaagtattctccgccagagaccgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0132E21.2" temp_strand="+" temp_description="C06SLm0132E21.2  AC211087.2 htgs_phase:3 submitted_to_sgn_as:C06SLm0132E21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="41543" stop="44964"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41843" g_stop="42089" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="247" r_length="247" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42090" i_stop="42404" i_length="315">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42405" g_stop="42503" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="346" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42504" i_stop="43589" i_length="1086">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43590" g_stop="43718" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="475" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43719" i_stop="43834" i_length="116">
            <donor d_prob="0.475" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43835" g_stop="43963" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="476" r_stop="604" r_length="129" r_score="0.992"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="43964" i_stop="44564" i_length="601">
            <donor d_prob="0.952" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="44565" g_stop="44664" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="605" r_stop="703" r_length="99" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0132E21.2" gen_strand="+" ref_id="SGN-E369888" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>704</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0132E21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E369888" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41843" e_stop="42089"/>
          <exon e_start="42405" e_stop="42503"/>
          <exon e_start="43590" e_stop="43718"/>
          <exon e_start="43835" e_stop="43963"/>
          <exon e_start="44565" e_stop="44664"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGAAAAACACTGAGATCTCTATTTAGCACGGAGCAGAAGCGCCATGGCTTCGTGCTGTTCATTGAGCTTCTCAACAGTCTCTTCAAAGCCTAACAAGCCTTACTCATCACCAATTTCTTCTTCTCTTGAGCTCCCCTTTACTTCCCAGTTGCCATTTTCTAAAAAATATTCACTTTATTCCAATCATACCCTTCTCCAAACTCAATGCCGGAAAACCCAATCACCGGATTGTCCCAGTTTCTTGGTACGTCTTGCAATTCTTTTGACACCCTTTTGATTTTCACGTTCAATTTTGAGTTTAGAAAAGTGAGCCCAGAATTTGAAATTAGTAATAGGTTGTATTGAACATAAATGTATATTGAAGAGTTTTACTACGCAGCTGTTGGTTTACAATATATTTCATGCTCAATCGAATGAGATGACTTGAAAGAGTTAGACTTTAGTTTGGGACTGAGATGTAGTTGATTGATTGTTTTTTTGGTATGGCTTTGTGTAGTGGCTGAGTTTTAGCCAAAAAGGGAAACTTGATTAGTGATTGAATTGTATTTTTGTGATTTAGGTTGTGGGATCTGCGAAAAAGCAAGAACCTTTGAGGGTAATGATATCGGGAGCTCCTGCTTCTGGTAAAGGAACGCAATGCGAGCTCATTACCAAGAAGGTAATGGTTCTTTTTTTTTTCTTCATAGGGACAAGTTGGTTGTTATGATCTTTTATGTTTGAATTATCTTTATGCTGTTCTATGTAGGTTTCTCTTTTTGGAATGGATGATGATCCATTGGGATTTTGGTTTTATAATTCTGAATATGAAATCTCTATTCTTGAAAGTTTATCTACTAATATAAATCGTCCCAATTTCCACTAATATGTGTGTTATAGACCAGGTTGTACAATATAGAGGTATACTTCCATTCATGACTTCTGACCATGGGTGTTTCTAAATTTGAGGACCAGTTTTTTACCATATTACTGGTATCATTCTACCCAGGACCTCTTATGACTTGACCCTTACTCCATTTGGTTCGTAGACTGATAACACAAGAACTGGTATGTGGGGATTGTTATACACTGATTGACAATACCGGCATGGTTAATACCAGTATTAGCTATGCATGTTGTATATCTAGTATAAGTCACAGGGTGATACACCTCTTTTACCACAGCCTAAAAAAGCAGAATTATCAGATTTATCTGCACTCTTGTAAACTAAAATCATCATGTAAATTTGTCCAGTTATCAGATTTGTCTTGAAAAGCATCTTACTAGCATCTGTTCAGCTGTTCCATATATTTACGTTATTTCCTTAGCATAACATGTATGTCTCCTATGTGTATTCTCTTACAATTCACTGGTACCTTGTTCCCTAGCCTCTTTATCTTGTTTATTATGAATTCTCATCTGGTTCCTCTAAATTCTCATTGGTGGGTTTGTAATATTTCCTTCAGCCGAAATTGTCCATATTATAATCAACTTTATCTTAATTATTAGCAAGTCCCTGCTACTTGAACTCACATTCTTCACATTTCTTGATTGATTTAGCTTTAGTTTGATTTCCATGCTCCTTATTCCTTCCCTTGTTTAACATGTAGTTGTAAAAAGGTATGTTGCTAGTAGCATTTGATGTTCCATTTCAAAAAATGTCTCTAGTTGCAGTCGATGTTAGTTGCTACCTTAATTACCCATTTTCCTTGTTATGTATTACCCTGTGAGAAGTAATAAATTGAATACCGTGAGCTCATATATGCAGTACGATTTGGTGCATATTGCTGCTGGAGATTTATTGAGGGCTGAAATTGCTGCAGGCACTGAAAATGGGAGGAGAGCAAAGGAGTATATGGATAAAGGACAATTGGTACCAAACGAGATAGTTGTAACGGTAGGTTTACCTGGCAAACTGGTTCCTGCTTTTGTTAGCATGCTATTTTAAAGGTTGAAAGAGATCATTAGAAAGAGTGTTTTATTCATATGTGATTTGTTGATTCCTTGTTTTAGATGGTCAAAGAGCGGTTGATGTGTCCAGACTCTCAAGAAAAGGGTTGGCTTTTAGATGGATATCCTCGGAGCTTGTCTCAAGCAGTAGCTCTCAAAGAGTTCCAGCCAAACCTTTTCATTCTTCTGGAAGTGAGGTTCTGCTATTGATATCCTCTGATTGTGTTCTCAATCTCTTTCTAGTTAAAGCCTTAAGAGGATGAAAAGGATCAACATAGAGTATCCTGCATTTAAAATTTACCTGAAAAAATCTTTGAACGGGAAAACTGTGCTTTTGGTCTGTGAAAACCTAATTTTAGCCTTCAATTGAGAGAACTGTGCGCTTTTGGTTCCTCCTCTAGCATATTTCCCTACAAGAGTCAGATTACTTCCTTAAAATGCAAAAGAGTATCAAAATAACTTTCTTAGCATAAAAGGTGAATAGTTGTATGGTTTAATAGTTGTACTTTCATGGAATTTATCAGTTGAGGGACCAAAAGCTGATACTATCAGTTGGAGGTTTAGTGGGCTTGACTGAATACTGTGATTCGTTAGTACCAAGATTACAACTTACAAATAACCAAAAAAAAATTATTTTTTTCCTTATTTTAAATATGATTAGTTTTTTCTGATTCTTTTTTGTTTCACATGTCGTATATTAAACTGCAAGAGGTTTCAGAATAAATGCACCTTCATCGAGTCATCAACCAATGTTTTAACTTTTAACAGGAACACGTTATATTGTAAATGATAGGTACCTGAAGAGATACTTGTTGAGAGAGTGGTTGGCCGTAGACTAGATCCTGTAACTGGGAGAATATACCATTTGAAGTATTCTCCGCCAGAGACCGATG</genome_strand>
        <mrna_strand>AAAAGAAAAACACTGAGATCTCTATTTAGCACGGAGCAGAAGCGCCATGGCTTCGTGCTGTTCATTGAGCTTCTCAACAGTCTCTTCAAAGCCTAACAAGCCTTACTCATCACCAATTTCTTCTTCTCTTGAGCTCCCCTTTACTTCCCAGTTGCCATTTTCTAAAAAATATTCACTTTATTCCAATCATACCCTTCTCCAAACTCAATGCCGGAAAACCCAATCACCGGATTGTCCCAGTTTCTTG...........................................................................................................................................................................................................................................................................................................................GTTGTGGGATCTGCGAAAAAGCAAGAACCTTTGAGGGTAATGATATCGGGAGCTCCTGCTTCTGGTAAAGGAACGCAATGCGAGCTCATTACCAAGAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACGATTTGGTGCATATTGCTGCTGGAGATTTATTGAGGGCTGAAATTGCTGCAGGCACTGAAAATGGGAGGAGAGCAAAGGAGTATATGGATAAAGGACAATTGGTACCAAACGAGATAGTTGTAACG....................................................................................................................ATGGTCAAAGAGCGGTTGATGTGTCCAGACTCTCAAGAAAAGGGTTGGCTTTTAGATGGATATCCTCGGAGCTTGTCTCAAGCAGTAGCTCTCAGAGAGTTCCAGCCAAACCTTTTCATTCTTCTGGAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCCTGAAGAGATACTTGTTGAGAGAGTGGTTGGCCGTAGACTAGATCCTGTAACTGGGAGAA-ATACCATTTGAAGTATTCTCCGCCAGAGACCGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E259445" ref_strand="+" ref_description="SGN-E259445 [cLEG-42-C7]">
      <seq>aaaagaaaaacactgagatctctatttagcacggagcagaagcgccatggcttcgtgctgttcattgagcttctcaacagtctcttcaaagcctaacaagccttactcatcaccaatttcttcttctcttgagctcccctttacttcccagttgccattttctaaaaaatattcactttattccaatcatacccttctccaaactcaatgccggaaaacccaatcaccggattgtcccagtttcttggttgtgggatctgcgaaaaagcaagaacctttgagggtaatgatatcgggagctcctgcttctggtaaaggaaccgcaatgcgagctcattaccaagaagtacgatttggtgcatattgctgctggagatttattgagggctgaaattgctgcaggcactgaaaatgggaggagagcaaaggagtatatggataaaggacaattggtaccaaacgagatagttgtaacgatggtcaaagagcggttgatgtgtccagactctcaagaaaagggttggcttttagatggatatcctcggagcttgtctcaagcagtagctctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0132E21.2" temp_strand="+" temp_description="C06SLm0132E21.2  AC211087.2 htgs_phase:3 submitted_to_sgn_as:C06SLm0132E21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="41543" stop="44227"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41843" g_stop="42089" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="247" r_length="247" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42090" i_stop="42404" i_length="315">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42405" g_stop="42503" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="347" r_length="100" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42504" i_stop="43589" i_length="1086">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43590" g_stop="43718" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="476" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43719" i_stop="43834" i_length="116">
            <donor d_prob="0.475" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43835" g_stop="43927" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="477" r_stop="569" r_length="93" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0132E21.2" gen_strand="+" ref_id="SGN-E259445" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>568</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0132E21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E259445" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41843" e_stop="42089"/>
          <exon e_start="42405" e_stop="42503"/>
          <exon e_start="43590" e_stop="43718"/>
          <exon e_start="43835" e_stop="43927"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGAAAAACACTGAGATCTCTATTTAGCACGGAGCAGAAGCGCCATGGCTTCGTGCTGTTCATTGAGCTTCTCAACAGTCTCTTCAAAGCCTAACAAGCCTTACTCATCACCAATTTCTTCTTCTCTTGAGCTCCCCTTTACTTCCCAGTTGCCATTTTCTAAAAAATATTCACTTTATTCCAATCATACCCTTCTCCAAACTCAATGCCGGAAAACCCAATCACCGGATTGTCCCAGTTTCTTGGTACGTCTTGCAATTCTTTTGACACCCTTTTGATTTTCACGTTCAATTTTGAGTTTAGAAAAGTGAGCCCAGAATTTGAAATTAGTAATAGGTTGTATTGAACATAAATGTATATTGAAGAGTTTTACTACGCAGCTGTTGGTTTACAATATATTTCATGCTCAATCGAATGAGATGACTTGAAAGAGTTAGACTTTAGTTTGGGACTGAGATGTAGTTGATTGATTGTTTTTTTGGTATGGCTTTGTGTAGTGGCTGAGTTTTAGCCAAAAAGGGAAACTTGATTAGTGATTGAATTGTATTTTTGTGATTTAGGTTGTGGGATCTGCGAAAAAGCAAGAACCTTTGAGGGTAATGATATCGGGAGCTCCTGCTTCTGGTAAAGGAA-CGCAATGCGAGCTCATTACCAAGAAGGTAATGGTTCTTTTTTTTTTCTTCATAGGGACAAGTTGGTTGTTATGATCTTTTATGTTTGAATTATCTTTATGCTGTTCTATGTAGGTTTCTCTTTTTGGAATGGATGATGATCCATTGGGATTTTGGTTTTATAATTCTGAATATGAAATCTCTATTCTTGAAAGTTTATCTACTAATATAAATCGTCCCAATTTCCACTAATATGTGTGTTATAGACCAGGTTGTACAATATAGAGGTATACTTCCATTCATGACTTCTGACCATGGGTGTTTCTAAATTTGAGGACCAGTTTTTTACCATATTACTGGTATCATTCTACCCAGGACCTCTTATGACTTGACCCTTACTCCATTTGGTTCGTAGACTGATAACACAAGAACTGGTATGTGGGGATTGTTATACACTGATTGACAATACCGGCATGGTTAATACCAGTATTAGCTATGCATGTTGTATATCTAGTATAAGTCACAGGGTGATACACCTCTTTTACCACAGCCTAAAAAAGCAGAATTATCAGATTTATCTGCACTCTTGTAAACTAAAATCATCATGTAAATTTGTCCAGTTATCAGATTTGTCTTGAAAAGCATCTTACTAGCATCTGTTCAGCTGTTCCATATATTTACGTTATTTCCTTAGCATAACATGTATGTCTCCTATGTGTATTCTCTTACAATTCACTGGTACCTTGTTCCCTAGCCTCTTTATCTTGTTTATTATGAATTCTCATCTGGTTCCTCTAAATTCTCATTGGTGGGTTTGTAATATTTCCTTCAGCCGAAATTGTCCATATTATAATCAACTTTATCTTAATTATTAGCAAGTCCCTGCTACTTGAACTCACATTCTTCACATTTCTTGATTGATTTAGCTTTAGTTTGATTTCCATGCTCCTTATTCCTTCCCTTGTTTAACATGTAGTTGTAAAAAGGTATGTTGCTAGTAGCATTTGATGTTCCATTTCAAAAAATGTCTCTAGTTGCAGTCGATGTTAGTTGCTACCTTAATTACCCATTTTCCTTGTTATGTATTACCCTGTGAGAAGTAATAAATTGAATACCGTGAGCTCATATATGCAGTACGATTTGGTGCATATTGCTGCTGGAGATTTATTGAGGGCTGAAATTGCTGCAGGCACTGAAAATGGGAGGAGAGCAAAGGAGTATATGGATAAAGGACAATTGGTACCAAACGAGATAGTTGTAACGGTAGGTTTACCTGGCAAACTGGTTCCTGCTTTTGTTAGCATGCTATTTTAAAGGTTGAAAGAGATCATTAGAAAGAGTGTTTTATTCATATGTGATTTGTTGATTCCTTGTTTTAGATGGTCAAAGAGCGGTTGATGTGTCCAGACTCTCAAGAAAAGGGTTGGCTTTTAGATGGATATCCTCGGAGCTTGTCTCAAGCAGTAGCTCTC</genome_strand>
        <mrna_strand>AAAAGAAAAACACTGAGATCTCTATTTAGCACGGAGCAGAAGCGCCATGGCTTCGTGCTGTTCATTGAGCTTCTCAACAGTCTCTTCAAAGCCTAACAAGCCTTACTCATCACCAATTTCTTCTTCTCTTGAGCTCCCCTTTACTTCCCAGTTGCCATTTTCTAAAAAATATTCACTTTATTCCAATCATACCCTTCTCCAAACTCAATGCCGGAAAACCCAATCACCGGATTGTCCCAGTTTCTTG...........................................................................................................................................................................................................................................................................................................................GTTGTGGGATCTGCGAAAAAGCAAGAACCTTTGAGGGTAATGATATCGGGAGCTCCTGCTTCTGGTAAAGGAACCGCAATGCGAGCTCATTACCAAGAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACGATTTGGTGCATATTGCTGCTGGAGATTTATTGAGGGCTGAAATTGCTGCAGGCACTGAAAATGGGAGGAGAGCAAAGGAGTATATGGATAAAGGACAATTGGTACCAAACGAGATAGTTGTAACG....................................................................................................................ATGGTCAAAGAGCGGTTGATGTGTCCAGACTCTCAAGAAAAGGGTTGGCTTTTAGATGGATATCCTCGGAGCTTGTCTCAAGCAGTAGCTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E255286" ref_strand="+" ref_description="SGN-E255286 [cLEG-30-E1]">
      <seq>aaaagaaatacactgagatctctatttagcacggagcagaagcgccatggcttcgtgctgttcattgagcttctcaacagtctcttcaaagcctaacaagccttactcatcaccaatttcttcttctcttgagctcccctttacttcccagttgccattttctaaaaaatattcactttattccaatcatacccttctccaaactcaatgccggaaaacccaatcaccggattgtcccagtttcttggttgtgggatctgcgaaaaagcaagaacctttgagggtaatgatatcgggagctcctgcttctggtaaaggaacgcaatgcgagctcattaccaagaagtacgatttggtgcatattgctgctggagatttattgagggctgaaattgctgcaggcactgaaaatgggaggagagcaaaggagtatatggataaaggacaattggtaccaaacgagatagttgtaacgatggtcaaagagcggttgatgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0132E21.2" temp_strand="+" temp_description="C06SLm0132E21.2  AC211087.2 htgs_phase:3 submitted_to_sgn_as:C06SLm0132E21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="41543" stop="44157"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41843" g_stop="42089" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="247" r_length="247" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42090" i_stop="42404" i_length="315">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42405" g_stop="42503" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="346" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42504" i_stop="43589" i_length="1086">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43590" g_stop="43718" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="475" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43719" i_stop="43834" i_length="116">
            <donor d_prob="0.475" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43835" g_stop="43857" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="476" r_stop="498" r_length="23" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0132E21.2" gen_strand="+" ref_id="SGN-E255286" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>498</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0132E21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E255286" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41843" e_stop="42089"/>
          <exon e_start="42405" e_stop="42503"/>
          <exon e_start="43590" e_stop="43718"/>
          <exon e_start="43835" e_stop="43857"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGAAAAACACTGAGATCTCTATTTAGCACGGAGCAGAAGCGCCATGGCTTCGTGCTGTTCATTGAGCTTCTCAACAGTCTCTTCAAAGCCTAACAAGCCTTACTCATCACCAATTTCTTCTTCTCTTGAGCTCCCCTTTACTTCCCAGTTGCCATTTTCTAAAAAATATTCACTTTATTCCAATCATACCCTTCTCCAAACTCAATGCCGGAAAACCCAATCACCGGATTGTCCCAGTTTCTTGGTACGTCTTGCAATTCTTTTGACACCCTTTTGATTTTCACGTTCAATTTTGAGTTTAGAAAAGTGAGCCCAGAATTTGAAATTAGTAATAGGTTGTATTGAACATAAATGTATATTGAAGAGTTTTACTACGCAGCTGTTGGTTTACAATATATTTCATGCTCAATCGAATGAGATGACTTGAAAGAGTTAGACTTTAGTTTGGGACTGAGATGTAGTTGATTGATTGTTTTTTTGGTATGGCTTTGTGTAGTGGCTGAGTTTTAGCCAAAAAGGGAAACTTGATTAGTGATTGAATTGTATTTTTGTGATTTAGGTTGTGGGATCTGCGAAAAAGCAAGAACCTTTGAGGGTAATGATATCGGGAGCTCCTGCTTCTGGTAAAGGAACGCAATGCGAGCTCATTACCAAGAAGGTAATGGTTCTTTTTTTTTTCTTCATAGGGACAAGTTGGTTGTTATGATCTTTTATGTTTGAATTATCTTTATGCTGTTCTATGTAGGTTTCTCTTTTTGGAATGGATGATGATCCATTGGGATTTTGGTTTTATAATTCTGAATATGAAATCTCTATTCTTGAAAGTTTATCTACTAATATAAATCGTCCCAATTTCCACTAATATGTGTGTTATAGACCAGGTTGTACAATATAGAGGTATACTTCCATTCATGACTTCTGACCATGGGTGTTTCTAAATTTGAGGACCAGTTTTTTACCATATTACTGGTATCATTCTACCCAGGACCTCTTATGACTTGACCCTTACTCCATTTGGTTCGTAGACTGATAACACAAGAACTGGTATGTGGGGATTGTTATACACTGATTGACAATACCGGCATGGTTAATACCAGTATTAGCTATGCATGTTGTATATCTAGTATAAGTCACAGGGTGATACACCTCTTTTACCACAGCCTAAAAAAGCAGAATTATCAGATTTATCTGCACTCTTGTAAACTAAAATCATCATGTAAATTTGTCCAGTTATCAGATTTGTCTTGAAAAGCATCTTACTAGCATCTGTTCAGCTGTTCCATATATTTACGTTATTTCCTTAGCATAACATGTATGTCTCCTATGTGTATTCTCTTACAATTCACTGGTACCTTGTTCCCTAGCCTCTTTATCTTGTTTATTATGAATTCTCATCTGGTTCCTCTAAATTCTCATTGGTGGGTTTGTAATATTTCCTTCAGCCGAAATTGTCCATATTATAATCAACTTTATCTTAATTATTAGCAAGTCCCTGCTACTTGAACTCACATTCTTCACATTTCTTGATTGATTTAGCTTTAGTTTGATTTCCATGCTCCTTATTCCTTCCCTTGTTTAACATGTAGTTGTAAAAAGGTATGTTGCTAGTAGCATTTGATGTTCCATTTCAAAAAATGTCTCTAGTTGCAGTCGATGTTAGTTGCTACCTTAATTACCCATTTTCCTTGTTATGTATTACCCTGTGAGAAGTAATAAATTGAATACCGTGAGCTCATATATGCAGTACGATTTGGTGCATATTGCTGCTGGAGATTTATTGAGGGCTGAAATTGCTGCAGGCACTGAAAATGGGAGGAGAGCAAAGGAGTATATGGATAAAGGACAATTGGTACCAAACGAGATAGTTGTAACGGTAGGTTTACCTGGCAAACTGGTTCCTGCTTTTGTTAGCATGCTATTTTAAAGGTTGAAAGAGATCATTAGAAAGAGTGTTTTATTCATATGTGATTTGTTGATTCCTTGTTTTAGATGGTCAAAGAGCGGTTGATGTG</genome_strand>
        <mrna_strand>AAAAGAAATACACTGAGATCTCTATTTAGCACGGAGCAGAAGCGCCATGGCTTCGTGCTGTTCATTGAGCTTCTCAACAGTCTCTTCAAAGCCTAACAAGCCTTACTCATCACCAATTTCTTCTTCTCTTGAGCTCCCCTTTACTTCCCAGTTGCCATTTTCTAAAAAATATTCACTTTATTCCAATCATACCCTTCTCCAAACTCAATGCCGGAAAACCCAATCACCGGATTGTCCCAGTTTCTTG...........................................................................................................................................................................................................................................................................................................................GTTGTGGGATCTGCGAAAAAGCAAGAACCTTTGAGGGTAATGATATCGGGAGCTCCTGCTTCTGGTAAAGGAACGCAATGCGAGCTCATTACCAAGAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACGATTTGGTGCATATTGCTGCTGGAGATTTATTGAGGGCTGAAATTGCTGCAGGCACTGAAAATGGGAGGAGAGCAAAGGAGTATATGGATAAAGGACAATTGGTACCAAACGAGATAGTTGTAACG....................................................................................................................ATGGTCAAAGAGCGGTTGATGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E699976" ref_strand="+" ref_description="SGN-E699976 [FA11DA10]">
      <seq>ctttaaagagatctctatttagcacggagcagaagcgccatggcttcgggctgtacattgagctgctcaacagtctcttcaaagcctaacaagccttactcatcaacggtttcttcttctcttgagctcccctttacgtcccagttgacattttctaagaaatattcactttattccaatcataccattctccaaactcaatgccggaaaacccaatcaccggattgacccactttcttggatgtgggatctgcgaaaaagcaagaacctttgagggtaatgatatcgggagctcctgcttctggtaaaggaacgcaatgcgagctcattaccaataagtacgatttggtgcatattgcgtgctggagatttattgagggctgaaattgctgcaggcactgaaaatgggaggagagcaaaggagtatatggataaaggacagttggtaccaaacgagatagttgtaacaatggtcaaagagaggttgatgtgtccagactctcaagaaaagggtgggctttaatatggatatcctcggaacgtgtctcgagcaatagctctcgaagagttccagccaaaccttttcattcttctggaagtacctgaaaagatacttgttgagagagtggttggccgtatactagatcctgtaagtgggagaatataccattagaagtattctccgccagagaccgatgaaatcgctgcgaggtttacccagcgctttgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0132E21.2" temp_strand="+" temp_description="C06SLm0132E21.2  AC211087.2 htgs_phase:3 submitted_to_sgn_as:C06SLm0132E21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="41557" stop="44997"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41850" g_stop="42089" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="240" r_length="240" r_score="0.925"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42090" i_stop="42404" i_length="315">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42405" g_stop="42503" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="339" r_length="99" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42504" i_stop="43589" i_length="1086">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.956" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43590" g_stop="43718" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="469" r_length="130" r_score="0.969"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43719" i_stop="43834" i_length="116">
            <donor d_prob="0.475" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43835" g_stop="43963" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="470" r_stop="598" r_length="129" r_score="0.930"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="43964" i_stop="44564" i_length="601">
            <donor d_prob="0.952" d_score="0.94"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="44565" g_stop="44697" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="599" r_stop="731" r_length="133" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0132E21.2" gen_strand="+" ref_id="SGN-E699976" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>730</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0132E21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E699976" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41850" e_stop="42089"/>
          <exon e_start="42405" e_stop="42503"/>
          <exon e_start="43590" e_stop="43718"/>
          <exon e_start="43835" e_stop="43963"/>
          <exon e_start="44565" e_stop="44697"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACACTGAGATCTCTATTTAGCACGGAGCAGAAGCGCCATGGCTTCGTGCTGTTCATTGAGCTTCTCAACAGTCTCTTCAAAGCCTAACAAGCCTTACTCATCACCAATTTCTTCTTCTCTTGAGCTCCCCTTTACTTCCCAGTTGCCATTTTCTAAAAAATATTCACTTTATTCCAATCATACCCTTCTCCAAACTCAATGCCGGAAAACCCAATCACCGGATTGTCCCAGTTTCTTGGTACGTCTTGCAATTCTTTTGACACCCTTTTGATTTTCACGTTCAATTTTGAGTTTAGAAAAGTGAGCCCAGAATTTGAAATTAGTAATAGGTTGTATTGAACATAAATGTATATTGAAGAGTTTTACTACGCAGCTGTTGGTTTACAATATATTTCATGCTCAATCGAATGAGATGACTTGAAAGAGTTAGACTTTAGTTTGGGACTGAGATGTAGTTGATTGATTGTTTTTTTGGTATGGCTTTGTGTAGTGGCTGAGTTTTAGCCAAAAAGGGAAACTTGATTAGTGATTGAATTGTATTTTTGTGATTTAGGTTGTGGGATCTGCGAAAAAGCAAGAACCTTTGAGGGTAATGATATCGGGAGCTCCTGCTTCTGGTAAAGGAACGCAATGCGAGCTCATTACCAAGAAGGTAATGGTTCTTTTTTTTTTCTTCATAGGGACAAGTTGGTTGTTATGATCTTTTATGTTTGAATTATCTTTATGCTGTTCTATGTAGGTTTCTCTTTTTGGAATGGATGATGATCCATTGGGATTTTGGTTTTATAATTCTGAATATGAAATCTCTATTCTTGAAAGTTTATCTACTAATATAAATCGTCCCAATTTCCACTAATATGTGTGTTATAGACCAGGTTGTACAATATAGAGGTATACTTCCATTCATGACTTCTGACCATGGGTGTTTCTAAATTTGAGGACCAGTTTTTTACCATATTACTGGTATCATTCTACCCAGGACCTCTTATGACTTGACCCTTACTCCATTTGGTTCGTAGACTGATAACACAAGAACTGGTATGTGGGGATTGTTATACACTGATTGACAATACCGGCATGGTTAATACCAGTATTAGCTATGCATGTTGTATATCTAGTATAAGTCACAGGGTGATACACCTCTTTTACCACAGCCTAAAAAAGCAGAATTATCAGATTTATCTGCACTCTTGTAAACTAAAATCATCATGTAAATTTGTCCAGTTATCAGATTTGTCTTGAAAAGCATCTTACTAGCATCTGTTCAGCTGTTCCATATATTTACGTTATTTCCTTAGCATAACATGTATGTCTCCTATGTGTATTCTCTTACAATTCACTGGTACCTTGTTCCCTAGCCTCTTTATCTTGTTTATTATGAATTCTCATCTGGTTCCTCTAAATTCTCATTGGTGGGTTTGTAATATTTCCTTCAGCCGAAATTGTCCATATTATAATCAACTTTATCTTAATTATTAGCAAGTCCCTGCTACTTGAACTCACATTCTTCACATTTCTTGATTGATTTAGCTTTAGTTTGATTTCCATGCTCCTTATTCCTTCCCTTGTTTAACATGTAGTTGTAAAAAGGTATGTTGCTAGTAGCATTTGATGTTCCATTTCAAAAAATGTCTCTAGTTGCAGTCGATGTTAGTTGCTACCTTAATTACCCATTTTCCTTGTTATGTATTACCCTGTGAGAAGTAATAAATTGAATACCGTGAGCTCATATATGCAGTACGATTTGGTGCATATTGC-TGCTGGAGATTTATTGAGGGCTGAAATTGCTGCAGGCACTGAAAATGGGAGGAGAGCAAAGGAGTATATGGATAAAGGACAATTGGTACCAAACGAGATAGTTGTAACGGTAGGTTTACCTGGCAAACTGGTTCCTGCTTTTGTTAGCATGCTATTTTAAAGGTTGAAAGAGATCATTAGAAAGAGTGTTTTATTCATATGTGATTTGTTGATTCCTTGTTTTAGATGGTCAAAGAGCGGTTGATGTGTCCAGACTCTCAAGAAAAGGGTTGGCTTTTAGATGGATATCCTCGGAGCTTGTCTCAAGCAGTAGCTCTCAAAGAGTTCCAGCCAAACCTTTTCATTCTTCTGGAAGTGAGGTTCTGCTATTGATATCCTCTGATTGTGTTCTCAATCTCTTTCTAGTTAAAGCCTTAAGAGGATGAAAAGGATCAACATAGAGTATCCTGCATTTAAAATTTACCTGAAAAAATCTTTGAACGGGAAAACTGTGCTTTTGGTCTGTGAAAACCTAATTTTAGCCTTCAATTGAGAGAACTGTGCGCTTTTGGTTCCTCCTCTAGCATATTTCCCTACAAGAGTCAGATTACTTCCTTAAAATGCAAAAGAGTATCAAAATAACTTTCTTAGCATAAAAGGTGAATAGTTGTATGGTTTAATAGTTGTACTTTCATGGAATTTATCAGTTGAGGGACCAAAAGCTGATACTATCAGTTGGAGGTTTAGTGGGCTTGACTGAATACTGTGATTCGTTAGTACCAAGATTACAACTTACAAATAACCAAAAAAAAATTATTTTTTTCCTTATTTTAAATATGATTAGTTTTTTCTGATTCTTTTTTGTTTCACATGTCGTATATTAAACTGCAAGAGGTTTCAGAATAAATGCACCTTCATCGAGTCATCAACCAATGTTTTAACTTTTAACAGGAACACGTTATATTGTAAATGATAGGTACCTGAAGAGATACTTGTTGAGAGAGTGGTTGGCCGTAGACTAGATCCTGTAACTGGGAGAATATACCATTTGAAGTATTCTCCGCCAGAGACCGATGAAATCGCTGCAAGGCTTACCCAGCGCTTTGATG</genome_strand>
        <mrna_strand>CTTTAAAGAGATCTCTATTTAGCACGGAGCAGAAGCGCCATGGCTTCGGGCTGTACATTGAGCTGCTCAACAGTCTCTTCAAAGCCTAACAAGCCTTACTCATCAACGGTTTCTTCTTCTCTTGAGCTCCCCTTTACGTCCCAGTTGACATTTTCTAAGAAATATTCACTTTATTCCAATCATACCATTCTCCAAACTCAATGCCGGAAAACCCAATCACCGGATTGACCCACTTTCTTG...........................................................................................................................................................................................................................................................................................................................GATGTGGGATCTGCGAAAAAGCAAGAACCTTTGAGGGTAATGATATCGGGAGCTCCTGCTTCTGGTAAAGGAACGCAATGCGAGCTCATTACCAATAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACGATTTGGTGCATATTGCGTGCTGGAGATTTATTGAGGGCTGAAATTGCTGCAGGCACTGAAAATGGGAGGAGAGCAAAGGAGTATATGGATAAAGGACAGTTGGTACCAAACGAGATAGTTGTAACA....................................................................................................................ATGGTCAAAGAGAGGTTGATGTGTCCAGACTCTCAAGAAAAGGGTGGGCTTTAATATGGATATCCTCGGAACGTGTCTCGAGCAATAGCTCTCGAAGAGTTCCAGCCAAACCTTTTCATTCTTCTGGAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCTGAAAAGATACTTGTTGAGAGAGTGGTTGGCCGTATACTAGATCCTGTAAGTGGGAGAATATACCATTAGAAGTATTCTCCGCCAGAGACCGATGAAATCGCTGCGAGGTTTACCCAGCGCTTTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E275580" ref_strand="+" ref_description="SGN-E275580 [cLEN-10-L9]">
      <seq>aaacactgagatctctatttagcacggagcagaagcgccatggcttcgtgctgttcattgagcttctcaacagtctcttcaaagcctaacaagccttactcatcaccaatttcttcttctcttgagctcccctttacttcccagttgccattttctaaaaaatattcactttattccaatcatacccttctccaaactcaatgccggaaaacccaatcaccggattgtcccagtttcttggttgtgggatctgcgaaaaagcaagaacctttgagggtaatgatatcgggagctcctgcttctggtaaaggaacgcaatgcgagctcattaccaagaagtacgatttggtgcatattgctgctggagatttattgagggctgaaattgctgcaggcactgaaaatgggaggagagcaaaggagtatatggataaaggacaattggtaccaaacgagatagttgtaacgatggtcaaagagcggttgatgtgtccagactctcaagaaaagggttggcttttagatggatatcctcggagcttgtctcaagcagtagctctcaaagagttccagccaaaccttttcattcttctggaagtacctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0132E21.2" temp_strand="+" temp_description="C06SLm0132E21.2  AC211087.2 htgs_phase:3 submitted_to_sgn_as:C06SLm0132E21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="41550" stop="44265"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41850" g_stop="42089" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="240" r_length="240" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42090" i_stop="42404" i_length="315">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42405" g_stop="42503" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="339" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42504" i_stop="43589" i_length="1086">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43590" g_stop="43718" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="468" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43719" i_stop="43834" i_length="116">
            <donor d_prob="0.475" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43835" g_stop="43963" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="469" r_stop="597" r_length="129" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0132E21.2" gen_strand="+" ref_id="SGN-E275580" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>597</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0132E21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E275580" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41850" e_stop="42089"/>
          <exon e_start="42405" e_stop="42503"/>
          <exon e_start="43590" e_stop="43718"/>
          <exon e_start="43835" e_stop="43963"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACACTGAGATCTCTATTTAGCACGGAGCAGAAGCGCCATGGCTTCGTGCTGTTCATTGAGCTTCTCAACAGTCTCTTCAAAGCCTAACAAGCCTTACTCATCACCAATTTCTTCTTCTCTTGAGCTCCCCTTTACTTCCCAGTTGCCATTTTCTAAAAAATATTCACTTTATTCCAATCATACCCTTCTCCAAACTCAATGCCGGAAAACCCAATCACCGGATTGTCCCAGTTTCTTGGTACGTCTTGCAATTCTTTTGACACCCTTTTGATTTTCACGTTCAATTTTGAGTTTAGAAAAGTGAGCCCAGAATTTGAAATTAGTAATAGGTTGTATTGAACATAAATGTATATTGAAGAGTTTTACTACGCAGCTGTTGGTTTACAATATATTTCATGCTCAATCGAATGAGATGACTTGAAAGAGTTAGACTTTAGTTTGGGACTGAGATGTAGTTGATTGATTGTTTTTTTGGTATGGCTTTGTGTAGTGGCTGAGTTTTAGCCAAAAAGGGAAACTTGATTAGTGATTGAATTGTATTTTTGTGATTTAGGTTGTGGGATCTGCGAAAAAGCAAGAACCTTTGAGGGTAATGATATCGGGAGCTCCTGCTTCTGGTAAAGGAACGCAATGCGAGCTCATTACCAAGAAGGTAATGGTTCTTTTTTTTTTCTTCATAGGGACAAGTTGGTTGTTATGATCTTTTATGTTTGAATTATCTTTATGCTGTTCTATGTAGGTTTCTCTTTTTGGAATGGATGATGATCCATTGGGATTTTGGTTTTATAATTCTGAATATGAAATCTCTATTCTTGAAAGTTTATCTACTAATATAAATCGTCCCAATTTCCACTAATATGTGTGTTATAGACCAGGTTGTACAATATAGAGGTATACTTCCATTCATGACTTCTGACCATGGGTGTTTCTAAATTTGAGGACCAGTTTTTTACCATATTACTGGTATCATTCTACCCAGGACCTCTTATGACTTGACCCTTACTCCATTTGGTTCGTAGACTGATAACACAAGAACTGGTATGTGGGGATTGTTATACACTGATTGACAATACCGGCATGGTTAATACCAGTATTAGCTATGCATGTTGTATATCTAGTATAAGTCACAGGGTGATACACCTCTTTTACCACAGCCTAAAAAAGCAGAATTATCAGATTTATCTGCACTCTTGTAAACTAAAATCATCATGTAAATTTGTCCAGTTATCAGATTTGTCTTGAAAAGCATCTTACTAGCATCTGTTCAGCTGTTCCATATATTTACGTTATTTCCTTAGCATAACATGTATGTCTCCTATGTGTATTCTCTTACAATTCACTGGTACCTTGTTCCCTAGCCTCTTTATCTTGTTTATTATGAATTCTCATCTGGTTCCTCTAAATTCTCATTGGTGGGTTTGTAATATTTCCTTCAGCCGAAATTGTCCATATTATAATCAACTTTATCTTAATTATTAGCAAGTCCCTGCTACTTGAACTCACATTCTTCACATTTCTTGATTGATTTAGCTTTAGTTTGATTTCCATGCTCCTTATTCCTTCCCTTGTTTAACATGTAGTTGTAAAAAGGTATGTTGCTAGTAGCATTTGATGTTCCATTTCAAAAAATGTCTCTAGTTGCAGTCGATGTTAGTTGCTACCTTAATTACCCATTTTCCTTGTTATGTATTACCCTGTGAGAAGTAATAAATTGAATACCGTGAGCTCATATATGCAGTACGATTTGGTGCATATTGCTGCTGGAGATTTATTGAGGGCTGAAATTGCTGCAGGCACTGAAAATGGGAGGAGAGCAAAGGAGTATATGGATAAAGGACAATTGGTACCAAACGAGATAGTTGTAACGGTAGGTTTACCTGGCAAACTGGTTCCTGCTTTTGTTAGCATGCTATTTTAAAGGTTGAAAGAGATCATTAGAAAGAGTGTTTTATTCATATGTGATTTGTTGATTCCTTGTTTTAGATGGTCAAAGAGCGGTTGATGTGTCCAGACTCTCAAGAAAAGGGTTGGCTTTTAGATGGATATCCTCGGAGCTTGTCTCAAGCAGTAGCTCTCAAAGAGTTCCAGCCAAACCTTTTCATTCTTCTGGAA</genome_strand>
        <mrna_strand>AAACACTGAGATCTCTATTTAGCACGGAGCAGAAGCGCCATGGCTTCGTGCTGTTCATTGAGCTTCTCAACAGTCTCTTCAAAGCCTAACAAGCCTTACTCATCACCAATTTCTTCTTCTCTTGAGCTCCCCTTTACTTCCCAGTTGCCATTTTCTAAAAAATATTCACTTTATTCCAATCATACCCTTCTCCAAACTCAATGCCGGAAAACCCAATCACCGGATTGTCCCAGTTTCTTG...........................................................................................................................................................................................................................................................................................................................GTTGTGGGATCTGCGAAAAAGCAAGAACCTTTGAGGGTAATGATATCGGGAGCTCCTGCTTCTGGTAAAGGAACGCAATGCGAGCTCATTACCAAGAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACGATTTGGTGCATATTGCTGCTGGAGATTTATTGAGGGCTGAAATTGCTGCAGGCACTGAAAATGGGAGGAGAGCAAAGGAGTATATGGATAAAGGACAATTGGTACCAAACGAGATAGTTGTAACG....................................................................................................................ATGGTCAAAGAGCGGTTGATGTGTCCAGACTCTCAAGAAAAGGGTTGGCTTTTAGATGGATATCCTCGGAGCTTGTCTCAAGCAGTAGCTCTCAAAGAGTTCCAGCCAAACCTTTTCATTCTTCTGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E390158" ref_strand="+" ref_description="SGN-E390158 [TUS-41-E21]">
      <seq>aacactgagatctctatttagcacagagcagaagcgccatggcttcgtgctgttcattgagcttctcaacagtctcttcaaagcctaacaagccttactcatcaccaatttcttcttctcttgagctcccctttacttcccagttgccattttctaaaaaatattcactttattccaatcatacccttctccaaactcaatgccggaaaacccaatcaccggattgtcccagtttcttggttgtgggatctgcgaaaaagcaagaacctttgagggtaatgatatcgggagctcctgcttctggtaaaggaacgcaatgcgagctcattaccaagaagtacgatttggtgcatattgctgctggagatttattgagggctgaaattgctgcaggcactgaaaatgggaggagagcaaaggagtatatggataaaggacaattggtaccaaacgagatagttgtaacgatggtcaaagagcggttgatgtgtccagactctcaagaaaagggttggcttttagatggatatcctcggagcttgtctcaagcagtagctctcaaagagttccagccaaaccttttcattcttctggaagtacctgaagagatacttgttgagagagtggttggccgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0132E21.2" temp_strand="+" temp_description="C06SLm0132E21.2  AC211087.2 htgs_phase:3 submitted_to_sgn_as:C06SLm0132E21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="41551" stop="44903"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41851" g_stop="42089" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="239" r_length="239" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42090" i_stop="42404" i_length="315">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42405" g_stop="42503" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="338" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42504" i_stop="43589" i_length="1086">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43590" g_stop="43718" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="467" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43719" i_stop="43834" i_length="116">
            <donor d_prob="0.475" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43835" g_stop="43963" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="468" r_stop="596" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="43964" i_stop="44564" i_length="601">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="44565" g_stop="44603" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="597" r_stop="635" r_length="39" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0132E21.2" gen_strand="+" ref_id="SGN-E390158" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>635</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0132E21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E390158" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41851" e_stop="42089"/>
          <exon e_start="42405" e_stop="42503"/>
          <exon e_start="43590" e_stop="43718"/>
          <exon e_start="43835" e_stop="43963"/>
          <exon e_start="44565" e_stop="44603"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACACTGAGATCTCTATTTAGCACGGAGCAGAAGCGCCATGGCTTCGTGCTGTTCATTGAGCTTCTCAACAGTCTCTTCAAAGCCTAACAAGCCTTACTCATCACCAATTTCTTCTTCTCTTGAGCTCCCCTTTACTTCCCAGTTGCCATTTTCTAAAAAATATTCACTTTATTCCAATCATACCCTTCTCCAAACTCAATGCCGGAAAACCCAATCACCGGATTGTCCCAGTTTCTTGGTACGTCTTGCAATTCTTTTGACACCCTTTTGATTTTCACGTTCAATTTTGAGTTTAGAAAAGTGAGCCCAGAATTTGAAATTAGTAATAGGTTGTATTGAACATAAATGTATATTGAAGAGTTTTACTACGCAGCTGTTGGTTTACAATATATTTCATGCTCAATCGAATGAGATGACTTGAAAGAGTTAGACTTTAGTTTGGGACTGAGATGTAGTTGATTGATTGTTTTTTTGGTATGGCTTTGTGTAGTGGCTGAGTTTTAGCCAAAAAGGGAAACTTGATTAGTGATTGAATTGTATTTTTGTGATTTAGGTTGTGGGATCTGCGAAAAAGCAAGAACCTTTGAGGGTAATGATATCGGGAGCTCCTGCTTCTGGTAAAGGAACGCAATGCGAGCTCATTACCAAGAAGGTAATGGTTCTTTTTTTTTTCTTCATAGGGACAAGTTGGTTGTTATGATCTTTTATGTTTGAATTATCTTTATGCTGTTCTATGTAGGTTTCTCTTTTTGGAATGGATGATGATCCATTGGGATTTTGGTTTTATAATTCTGAATATGAAATCTCTATTCTTGAAAGTTTATCTACTAATATAAATCGTCCCAATTTCCACTAATATGTGTGTTATAGACCAGGTTGTACAATATAGAGGTATACTTCCATTCATGACTTCTGACCATGGGTGTTTCTAAATTTGAGGACCAGTTTTTTACCATATTACTGGTATCATTCTACCCAGGACCTCTTATGACTTGACCCTTACTCCATTTGGTTCGTAGACTGATAACACAAGAACTGGTATGTGGGGATTGTTATACACTGATTGACAATACCGGCATGGTTAATACCAGTATTAGCTATGCATGTTGTATATCTAGTATAAGTCACAGGGTGATACACCTCTTTTACCACAGCCTAAAAAAGCAGAATTATCAGATTTATCTGCACTCTTGTAAACTAAAATCATCATGTAAATTTGTCCAGTTATCAGATTTGTCTTGAAAAGCATCTTACTAGCATCTGTTCAGCTGTTCCATATATTTACGTTATTTCCTTAGCATAACATGTATGTCTCCTATGTGTATTCTCTTACAATTCACTGGTACCTTGTTCCCTAGCCTCTTTATCTTGTTTATTATGAATTCTCATCTGGTTCCTCTAAATTCTCATTGGTGGGTTTGTAATATTTCCTTCAGCCGAAATTGTCCATATTATAATCAACTTTATCTTAATTATTAGCAAGTCCCTGCTACTTGAACTCACATTCTTCACATTTCTTGATTGATTTAGCTTTAGTTTGATTTCCATGCTCCTTATTCCTTCCCTTGTTTAACATGTAGTTGTAAAAAGGTATGTTGCTAGTAGCATTTGATGTTCCATTTCAAAAAATGTCTCTAGTTGCAGTCGATGTTAGTTGCTACCTTAATTACCCATTTTCCTTGTTATGTATTACCCTGTGAGAAGTAATAAATTGAATACCGTGAGCTCATATATGCAGTACGATTTGGTGCATATTGCTGCTGGAGATTTATTGAGGGCTGAAATTGCTGCAGGCACTGAAAATGGGAGGAGAGCAAAGGAGTATATGGATAAAGGACAATTGGTACCAAACGAGATAGTTGTAACGGTAGGTTTACCTGGCAAACTGGTTCCTGCTTTTGTTAGCATGCTATTTTAAAGGTTGAAAGAGATCATTAGAAAGAGTGTTTTATTCATATGTGATTTGTTGATTCCTTGTTTTAGATGGTCAAAGAGCGGTTGATGTGTCCAGACTCTCAAGAAAAGGGTTGGCTTTTAGATGGATATCCTCGGAGCTTGTCTCAAGCAGTAGCTCTCAAAGAGTTCCAGCCAAACCTTTTCATTCTTCTGGAAGTGAGGTTCTGCTATTGATATCCTCTGATTGTGTTCTCAATCTCTTTCTAGTTAAAGCCTTAAGAGGATGAAAAGGATCAACATAGAGTATCCTGCATTTAAAATTTACCTGAAAAAATCTTTGAACGGGAAAACTGTGCTTTTGGTCTGTGAAAACCTAATTTTAGCCTTCAATTGAGAGAACTGTGCGCTTTTGGTTCCTCCTCTAGCATATTTCCCTACAAGAGTCAGATTACTTCCTTAAAATGCAAAAGAGTATCAAAATAACTTTCTTAGCATAAAAGGTGAATAGTTGTATGGTTTAATAGTTGTACTTTCATGGAATTTATCAGTTGAGGGACCAAAAGCTGATACTATCAGTTGGAGGTTTAGTGGGCTTGACTGAATACTGTGATTCGTTAGTACCAAGATTACAACTTACAAATAACCAAAAAAAAATTATTTTTTTCCTTATTTTAAATATGATTAGTTTTTTCTGATTCTTTTTTGTTTCACATGTCGTATATTAAACTGCAAGAGGTTTCAGAATAAATGCACCTTCATCGAGTCATCAACCAATGTTTTAACTTTTAACAGGAACACGTTATATTGTAAATGATAGGTACCTGAAGAGATACTTGTTGAGAGAGTGGTTGGCCGT</genome_strand>
        <mrna_strand>AACACTGAGATCTCTATTTAGCACAGAGCAGAAGCGCCATGGCTTCGTGCTGTTCATTGAGCTTCTCAACAGTCTCTTCAAAGCCTAACAAGCCTTACTCATCACCAATTTCTTCTTCTCTTGAGCTCCCCTTTACTTCCCAGTTGCCATTTTCTAAAAAATATTCACTTTATTCCAATCATACCCTTCTCCAAACTCAATGCCGGAAAACCCAATCACCGGATTGTCCCAGTTTCTTG...........................................................................................................................................................................................................................................................................................................................GTTGTGGGATCTGCGAAAAAGCAAGAACCTTTGAGGGTAATGATATCGGGAGCTCCTGCTTCTGGTAAAGGAACGCAATGCGAGCTCATTACCAAGAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACGATTTGGTGCATATTGCTGCTGGAGATTTATTGAGGGCTGAAATTGCTGCAGGCACTGAAAATGGGAGGAGAGCAAAGGAGTATATGGATAAAGGACAATTGGTACCAAACGAGATAGTTGTAACG....................................................................................................................ATGGTCAAAGAGCGGTTGATGTGTCCAGACTCTCAAGAAAAGGGTTGGCTTTTAGATGGATATCCTCGGAGCTTGTCTCAAGCAGTAGCTCTCAAAGAGTTCCAGCCAAACCTTTTCATTCTTCTGGAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCTGAAGAGATACTTGTTGAGAGAGTGGTTGGCCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E390101" ref_strand="+" ref_description="SGN-E390101 [TUS-17-E21]">
      <seq>aacactgagatctctatttagcacagagcagaagcgccatggcttcgtgctgttcattgagcttctcaacagtctcttcaaagcctaacaagccttactcatcaccaatttcttcttctcttgagctcccctttacttcccagttgccattttctaaaaaatattcactttattccaatcatacccttctccaaactcaatgccggaaaacccaatcaccggattgtcccagtttcttggttgtgggatctgcgaaaaagcaagaacctttgagggtaatgatatcgggagctcctgcttctggtaaaggaacgcaatgcgagctcattaccaagaagtacgatttggtgcatattgctgctggagatttattgagggctgaaattgctgcaggcactgaaaatgggaggagagcaaaggagtatatggataaaggacaattggtaccaaacgagatagttgtaacgatggtcaaagagcggttgatgtgtccagactctcaagaaaagggttggcttttagatggatatcctcggagcttgtctcaagcagtagctctcaaagagttccagccaaaccttttcattcttctggaagtacctgaagagatacttgttgagagagtggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0132E21.2" temp_strand="+" temp_description="C06SLm0132E21.2  AC211087.2 htgs_phase:3 submitted_to_sgn_as:C06SLm0132E21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="41551" stop="44896"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41851" g_stop="42089" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="239" r_length="239" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42090" i_stop="42404" i_length="315">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42405" g_stop="42503" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="338" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42504" i_stop="43589" i_length="1086">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43590" g_stop="43718" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="467" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43719" i_stop="43834" i_length="116">
            <donor d_prob="0.475" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43835" g_stop="43963" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="468" r_stop="596" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="43964" i_stop="44564" i_length="601">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="44565" g_stop="44596" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="597" r_stop="628" r_length="32" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0132E21.2" gen_strand="+" ref_id="SGN-E390101" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>628</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0132E21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E390101" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41851" e_stop="42089"/>
          <exon e_start="42405" e_stop="42503"/>
          <exon e_start="43590" e_stop="43718"/>
          <exon e_start="43835" e_stop="43963"/>
          <exon e_start="44565" e_stop="44596"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACACTGAGATCTCTATTTAGCACGGAGCAGAAGCGCCATGGCTTCGTGCTGTTCATTGAGCTTCTCAACAGTCTCTTCAAAGCCTAACAAGCCTTACTCATCACCAATTTCTTCTTCTCTTGAGCTCCCCTTTACTTCCCAGTTGCCATTTTCTAAAAAATATTCACTTTATTCCAATCATACCCTTCTCCAAACTCAATGCCGGAAAACCCAATCACCGGATTGTCCCAGTTTCTTGGTACGTCTTGCAATTCTTTTGACACCCTTTTGATTTTCACGTTCAATTTTGAGTTTAGAAAAGTGAGCCCAGAATTTGAAATTAGTAATAGGTTGTATTGAACATAAATGTATATTGAAGAGTTTTACTACGCAGCTGTTGGTTTACAATATATTTCATGCTCAATCGAATGAGATGACTTGAAAGAGTTAGACTTTAGTTTGGGACTGAGATGTAGTTGATTGATTGTTTTTTTGGTATGGCTTTGTGTAGTGGCTGAGTTTTAGCCAAAAAGGGAAACTTGATTAGTGATTGAATTGTATTTTTGTGATTTAGGTTGTGGGATCTGCGAAAAAGCAAGAACCTTTGAGGGTAATGATATCGGGAGCTCCTGCTTCTGGTAAAGGAACGCAATGCGAGCTCATTACCAAGAAGGTAATGGTTCTTTTTTTTTTCTTCATAGGGACAAGTTGGTTGTTATGATCTTTTATGTTTGAATTATCTTTATGCTGTTCTATGTAGGTTTCTCTTTTTGGAATGGATGATGATCCATTGGGATTTTGGTTTTATAATTCTGAATATGAAATCTCTATTCTTGAAAGTTTATCTACTAATATAAATCGTCCCAATTTCCACTAATATGTGTGTTATAGACCAGGTTGTACAATATAGAGGTATACTTCCATTCATGACTTCTGACCATGGGTGTTTCTAAATTTGAGGACCAGTTTTTTACCATATTACTGGTATCATTCTACCCAGGACCTCTTATGACTTGACCCTTACTCCATTTGGTTCGTAGACTGATAACACAAGAACTGGTATGTGGGGATTGTTATACACTGATTGACAATACCGGCATGGTTAATACCAGTATTAGCTATGCATGTTGTATATCTAGTATAAGTCACAGGGTGATACACCTCTTTTACCACAGCCTAAAAAAGCAGAATTATCAGATTTATCTGCACTCTTGTAAACTAAAATCATCATGTAAATTTGTCCAGTTATCAGATTTGTCTTGAAAAGCATCTTACTAGCATCTGTTCAGCTGTTCCATATATTTACGTTATTTCCTTAGCATAACATGTATGTCTCCTATGTGTATTCTCTTACAATTCACTGGTACCTTGTTCCCTAGCCTCTTTATCTTGTTTATTATGAATTCTCATCTGGTTCCTCTAAATTCTCATTGGTGGGTTTGTAATATTTCCTTCAGCCGAAATTGTCCATATTATAATCAACTTTATCTTAATTATTAGCAAGTCCCTGCTACTTGAACTCACATTCTTCACATTTCTTGATTGATTTAGCTTTAGTTTGATTTCCATGCTCCTTATTCCTTCCCTTGTTTAACATGTAGTTGTAAAAAGGTATGTTGCTAGTAGCATTTGATGTTCCATTTCAAAAAATGTCTCTAGTTGCAGTCGATGTTAGTTGCTACCTTAATTACCCATTTTCCTTGTTATGTATTACCCTGTGAGAAGTAATAAATTGAATACCGTGAGCTCATATATGCAGTACGATTTGGTGCATATTGCTGCTGGAGATTTATTGAGGGCTGAAATTGCTGCAGGCACTGAAAATGGGAGGAGAGCAAAGGAGTATATGGATAAAGGACAATTGGTACCAAACGAGATAGTTGTAACGGTAGGTTTACCTGGCAAACTGGTTCCTGCTTTTGTTAGCATGCTATTTTAAAGGTTGAAAGAGATCATTAGAAAGAGTGTTTTATTCATATGTGATTTGTTGATTCCTTGTTTTAGATGGTCAAAGAGCGGTTGATGTGTCCAGACTCTCAAGAAAAGGGTTGGCTTTTAGATGGATATCCTCGGAGCTTGTCTCAAGCAGTAGCTCTCAAAGAGTTCCAGCCAAACCTTTTCATTCTTCTGGAAGTGAGGTTCTGCTATTGATATCCTCTGATTGTGTTCTCAATCTCTTTCTAGTTAAAGCCTTAAGAGGATGAAAAGGATCAACATAGAGTATCCTGCATTTAAAATTTACCTGAAAAAATCTTTGAACGGGAAAACTGTGCTTTTGGTCTGTGAAAACCTAATTTTAGCCTTCAATTGAGAGAACTGTGCGCTTTTGGTTCCTCCTCTAGCATATTTCCCTACAAGAGTCAGATTACTTCCTTAAAATGCAAAAGAGTATCAAAATAACTTTCTTAGCATAAAAGGTGAATAGTTGTATGGTTTAATAGTTGTACTTTCATGGAATTTATCAGTTGAGGGACCAAAAGCTGATACTATCAGTTGGAGGTTTAGTGGGCTTGACTGAATACTGTGATTCGTTAGTACCAAGATTACAACTTACAAATAACCAAAAAAAAATTATTTTTTTCCTTATTTTAAATATGATTAGTTTTTTCTGATTCTTTTTTGTTTCACATGTCGTATATTAAACTGCAAGAGGTTTCAGAATAAATGCACCTTCATCGAGTCATCAACCAATGTTTTAACTTTTAACAGGAACACGTTATATTGTAAATGATAGGTACCTGAAGAGATACTTGTTGAGAGAGTGGT</genome_strand>
        <mrna_strand>AACACTGAGATCTCTATTTAGCACAGAGCAGAAGCGCCATGGCTTCGTGCTGTTCATTGAGCTTCTCAACAGTCTCTTCAAAGCCTAACAAGCCTTACTCATCACCAATTTCTTCTTCTCTTGAGCTCCCCTTTACTTCCCAGTTGCCATTTTCTAAAAAATATTCACTTTATTCCAATCATACCCTTCTCCAAACTCAATGCCGGAAAACCCAATCACCGGATTGTCCCAGTTTCTTG...........................................................................................................................................................................................................................................................................................................................GTTGTGGGATCTGCGAAAAAGCAAGAACCTTTGAGGGTAATGATATCGGGAGCTCCTGCTTCTGGTAAAGGAACGCAATGCGAGCTCATTACCAAGAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACGATTTGGTGCATATTGCTGCTGGAGATTTATTGAGGGCTGAAATTGCTGCAGGCACTGAAAATGGGAGGAGAGCAAAGGAGTATATGGATAAAGGACAATTGGTACCAAACGAGATAGTTGTAACG....................................................................................................................ATGGTCAAAGAGCGGTTGATGTGTCCAGACTCTCAAGAAAAGGGTTGGCTTTTAGATGGATATCCTCGGAGCTTGTCTCAAGCAGTAGCTCTCAAAGAGTTCCAGCCAAACCTTTTCATTCTTCTGGAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCTGAAGAGATACTTGTTGAGAGAGTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E251596" ref_strand="+" ref_description="SGN-E251596 [cLEG-9-F8]">
      <seq>acactgagatctctatttagcacagagcagaagcgccatggcttcgtgctgttcattgagcttctcaacagtctcttcaaagcctaacaagccttactcatcaccaatttcttcttctcttgagctcccctttacttcccagttgccattttctaaaaaatattcactttattccaatcatacccttctccaaactcaatgccggaaaacccaatcaccggattgtcccagtttcttggttgtgggatctgcgaaaaagcaagaacctttgagggtaatgatatcgggagctcctgcttctggtaaaggaacgcaatgcgagctcattaccaagaagtacgatttggtgcatattgctgctggagatttattgagggctgaaattgctgcaggcactgaaaatgggaggagagcaaaggagtatatggataaaggacaattggtaccaaacgagatagttgtaacgatggtcaaagagcggttgatgtgtccagactctcaagaaaagggttggcttttagatggatatcctcggagcttgtctcaagcagtagctctcaaagagttccagccaaaccttttcattcttctggaagtacctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0132E21.2" temp_strand="+" temp_description="C06SLm0132E21.2  AC211087.2 htgs_phase:3 submitted_to_sgn_as:C06SLm0132E21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="41552" stop="44265"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41852" g_stop="42089" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="238" r_length="238" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42090" i_stop="42404" i_length="315">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42405" g_stop="42503" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="337" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42504" i_stop="43589" i_length="1086">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43590" g_stop="43718" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="466" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43719" i_stop="43834" i_length="116">
            <donor d_prob="0.475" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43835" g_stop="43963" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="467" r_stop="595" r_length="129" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0132E21.2" gen_strand="+" ref_id="SGN-E251596" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>595</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0132E21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E251596" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41852" e_stop="42089"/>
          <exon e_start="42405" e_stop="42503"/>
          <exon e_start="43590" e_stop="43718"/>
          <exon e_start="43835" e_stop="43963"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACTGAGATCTCTATTTAGCACGGAGCAGAAGCGCCATGGCTTCGTGCTGTTCATTGAGCTTCTCAACAGTCTCTTCAAAGCCTAACAAGCCTTACTCATCACCAATTTCTTCTTCTCTTGAGCTCCCCTTTACTTCCCAGTTGCCATTTTCTAAAAAATATTCACTTTATTCCAATCATACCCTTCTCCAAACTCAATGCCGGAAAACCCAATCACCGGATTGTCCCAGTTTCTTGGTACGTCTTGCAATTCTTTTGACACCCTTTTGATTTTCACGTTCAATTTTGAGTTTAGAAAAGTGAGCCCAGAATTTGAAATTAGTAATAGGTTGTATTGAACATAAATGTATATTGAAGAGTTTTACTACGCAGCTGTTGGTTTACAATATATTTCATGCTCAATCGAATGAGATGACTTGAAAGAGTTAGACTTTAGTTTGGGACTGAGATGTAGTTGATTGATTGTTTTTTTGGTATGGCTTTGTGTAGTGGCTGAGTTTTAGCCAAAAAGGGAAACTTGATTAGTGATTGAATTGTATTTTTGTGATTTAGGTTGTGGGATCTGCGAAAAAGCAAGAACCTTTGAGGGTAATGATATCGGGAGCTCCTGCTTCTGGTAAAGGAACGCAATGCGAGCTCATTACCAAGAAGGTAATGGTTCTTTTTTTTTTCTTCATAGGGACAAGTTGGTTGTTATGATCTTTTATGTTTGAATTATCTTTATGCTGTTCTATGTAGGTTTCTCTTTTTGGAATGGATGATGATCCATTGGGATTTTGGTTTTATAATTCTGAATATGAAATCTCTATTCTTGAAAGTTTATCTACTAATATAAATCGTCCCAATTTCCACTAATATGTGTGTTATAGACCAGGTTGTACAATATAGAGGTATACTTCCATTCATGACTTCTGACCATGGGTGTTTCTAAATTTGAGGACCAGTTTTTTACCATATTACTGGTATCATTCTACCCAGGACCTCTTATGACTTGACCCTTACTCCATTTGGTTCGTAGACTGATAACACAAGAACTGGTATGTGGGGATTGTTATACACTGATTGACAATACCGGCATGGTTAATACCAGTATTAGCTATGCATGTTGTATATCTAGTATAAGTCACAGGGTGATACACCTCTTTTACCACAGCCTAAAAAAGCAGAATTATCAGATTTATCTGCACTCTTGTAAACTAAAATCATCATGTAAATTTGTCCAGTTATCAGATTTGTCTTGAAAAGCATCTTACTAGCATCTGTTCAGCTGTTCCATATATTTACGTTATTTCCTTAGCATAACATGTATGTCTCCTATGTGTATTCTCTTACAATTCACTGGTACCTTGTTCCCTAGCCTCTTTATCTTGTTTATTATGAATTCTCATCTGGTTCCTCTAAATTCTCATTGGTGGGTTTGTAATATTTCCTTCAGCCGAAATTGTCCATATTATAATCAACTTTATCTTAATTATTAGCAAGTCCCTGCTACTTGAACTCACATTCTTCACATTTCTTGATTGATTTAGCTTTAGTTTGATTTCCATGCTCCTTATTCCTTCCCTTGTTTAACATGTAGTTGTAAAAAGGTATGTTGCTAGTAGCATTTGATGTTCCATTTCAAAAAATGTCTCTAGTTGCAGTCGATGTTAGTTGCTACCTTAATTACCCATTTTCCTTGTTATGTATTACCCTGTGAGAAGTAATAAATTGAATACCGTGAGCTCATATATGCAGTACGATTTGGTGCATATTGCTGCTGGAGATTTATTGAGGGCTGAAATTGCTGCAGGCACTGAAAATGGGAGGAGAGCAAAGGAGTATATGGATAAAGGACAATTGGTACCAAACGAGATAGTTGTAACGGTAGGTTTACCTGGCAAACTGGTTCCTGCTTTTGTTAGCATGCTATTTTAAAGGTTGAAAGAGATCATTAGAAAGAGTGTTTTATTCATATGTGATTTGTTGATTCCTTGTTTTAGATGGTCAAAGAGCGGTTGATGTGTCCAGACTCTCAAGAAAAGGGTTGGCTTTTAGATGGATATCCTCGGAGCTTGTCTCAAGCAGTAGCTCTCAAAGAGTTCCAGCCAAACCTTTTCATTCTTCTGGAA</genome_strand>
        <mrna_strand>ACACTGAGATCTCTATTTAGCACAGAGCAGAAGCGCCATGGCTTCGTGCTGTTCATTGAGCTTCTCAACAGTCTCTTCAAAGCCTAACAAGCCTTACTCATCACCAATTTCTTCTTCTCTTGAGCTCCCCTTTACTTCCCAGTTGCCATTTTCTAAAAAATATTCACTTTATTCCAATCATACCCTTCTCCAAACTCAATGCCGGAAAACCCAATCACCGGATTGTCCCAGTTTCTTG...........................................................................................................................................................................................................................................................................................................................GTTGTGGGATCTGCGAAAAAGCAAGAACCTTTGAGGGTAATGATATCGGGAGCTCCTGCTTCTGGTAAAGGAACGCAATGCGAGCTCATTACCAAGAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACGATTTGGTGCATATTGCTGCTGGAGATTTATTGAGGGCTGAAATTGCTGCAGGCACTGAAAATGGGAGGAGAGCAAAGGAGTATATGGATAAAGGACAATTGGTACCAAACGAGATAGTTGTAACG....................................................................................................................ATGGTCAAAGAGCGGTTGATGTGTCCAGACTCTCAAGAAAAGGGTTGGCTTTTAGATGGATATCCTCGGAGCTTGTCTCAAGCAGTAGCTCTCAAAGAGTTCCAGCCAAACCTTTTCATTCTTCTGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E258585" ref_strand="+" ref_description="SGN-E258585 [cLEG-47-H2]">
      <seq>acactgagatctctatttagcacggagcagaagcgccatggcttcgtgctgttcattgagcttctcaacagtctcttcaaagcctaacaagccttactcatcaccaatttcttcttctcttgagctcccctttacttcccagttgccattttctaaaaaatattcactttattccaatcatacccttctccaaactcaatgccggaaaacccaatcaccggattgtcccagtttcttggttgtgggatctgcgaaaaagcaagaacctttgagggtaatgatatcgggagctcctgcttctggtaaaggaacgcaatgcgagctcattaccaagaagtacgatttggtgcatattgctgctggagatttattgagggctgaaattgctgcaggcactgaaaatgggaggagagcaaaggagtatatggataaaggacaattggtaccaaacgagatagttgtaacgatggtcaaagagcggttgatgtgtccagactctcaagaaaagggttggcttttagatggatatcctcggagcttgtctcaagcagtagctctcaaagagttccagccaaaccttttcattcttctggaagtacctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0132E21.2" temp_strand="+" temp_description="C06SLm0132E21.2  AC211087.2 htgs_phase:3 submitted_to_sgn_as:C06SLm0132E21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="41552" stop="44265"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41852" g_stop="42089" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="238" r_length="238" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42090" i_stop="42404" i_length="315">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42405" g_stop="42503" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="337" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42504" i_stop="43589" i_length="1086">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43590" g_stop="43718" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="466" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43719" i_stop="43834" i_length="116">
            <donor d_prob="0.475" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43835" g_stop="43963" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="467" r_stop="595" r_length="129" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0132E21.2" gen_strand="+" ref_id="SGN-E258585" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>595</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0132E21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E258585" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41852" e_stop="42089"/>
          <exon e_start="42405" e_stop="42503"/>
          <exon e_start="43590" e_stop="43718"/>
          <exon e_start="43835" e_stop="43963"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACTGAGATCTCTATTTAGCACGGAGCAGAAGCGCCATGGCTTCGTGCTGTTCATTGAGCTTCTCAACAGTCTCTTCAAAGCCTAACAAGCCTTACTCATCACCAATTTCTTCTTCTCTTGAGCTCCCCTTTACTTCCCAGTTGCCATTTTCTAAAAAATATTCACTTTATTCCAATCATACCCTTCTCCAAACTCAATGCCGGAAAACCCAATCACCGGATTGTCCCAGTTTCTTGGTACGTCTTGCAATTCTTTTGACACCCTTTTGATTTTCACGTTCAATTTTGAGTTTAGAAAAGTGAGCCCAGAATTTGAAATTAGTAATAGGTTGTATTGAACATAAATGTATATTGAAGAGTTTTACTACGCAGCTGTTGGTTTACAATATATTTCATGCTCAATCGAATGAGATGACTTGAAAGAGTTAGACTTTAGTTTGGGACTGAGATGTAGTTGATTGATTGTTTTTTTGGTATGGCTTTGTGTAGTGGCTGAGTTTTAGCCAAAAAGGGAAACTTGATTAGTGATTGAATTGTATTTTTGTGATTTAGGTTGTGGGATCTGCGAAAAAGCAAGAACCTTTGAGGGTAATGATATCGGGAGCTCCTGCTTCTGGTAAAGGAACGCAATGCGAGCTCATTACCAAGAAGGTAATGGTTCTTTTTTTTTTCTTCATAGGGACAAGTTGGTTGTTATGATCTTTTATGTTTGAATTATCTTTATGCTGTTCTATGTAGGTTTCTCTTTTTGGAATGGATGATGATCCATTGGGATTTTGGTTTTATAATTCTGAATATGAAATCTCTATTCTTGAAAGTTTATCTACTAATATAAATCGTCCCAATTTCCACTAATATGTGTGTTATAGACCAGGTTGTACAATATAGAGGTATACTTCCATTCATGACTTCTGACCATGGGTGTTTCTAAATTTGAGGACCAGTTTTTTACCATATTACTGGTATCATTCTACCCAGGACCTCTTATGACTTGACCCTTACTCCATTTGGTTCGTAGACTGATAACACAAGAACTGGTATGTGGGGATTGTTATACACTGATTGACAATACCGGCATGGTTAATACCAGTATTAGCTATGCATGTTGTATATCTAGTATAAGTCACAGGGTGATACACCTCTTTTACCACAGCCTAAAAAAGCAGAATTATCAGATTTATCTGCACTCTTGTAAACTAAAATCATCATGTAAATTTGTCCAGTTATCAGATTTGTCTTGAAAAGCATCTTACTAGCATCTGTTCAGCTGTTCCATATATTTACGTTATTTCCTTAGCATAACATGTATGTCTCCTATGTGTATTCTCTTACAATTCACTGGTACCTTGTTCCCTAGCCTCTTTATCTTGTTTATTATGAATTCTCATCTGGTTCCTCTAAATTCTCATTGGTGGGTTTGTAATATTTCCTTCAGCCGAAATTGTCCATATTATAATCAACTTTATCTTAATTATTAGCAAGTCCCTGCTACTTGAACTCACATTCTTCACATTTCTTGATTGATTTAGCTTTAGTTTGATTTCCATGCTCCTTATTCCTTCCCTTGTTTAACATGTAGTTGTAAAAAGGTATGTTGCTAGTAGCATTTGATGTTCCATTTCAAAAAATGTCTCTAGTTGCAGTCGATGTTAGTTGCTACCTTAATTACCCATTTTCCTTGTTATGTATTACCCTGTGAGAAGTAATAAATTGAATACCGTGAGCTCATATATGCAGTACGATTTGGTGCATATTGCTGCTGGAGATTTATTGAGGGCTGAAATTGCTGCAGGCACTGAAAATGGGAGGAGAGCAAAGGAGTATATGGATAAAGGACAATTGGTACCAAACGAGATAGTTGTAACGGTAGGTTTACCTGGCAAACTGGTTCCTGCTTTTGTTAGCATGCTATTTTAAAGGTTGAAAGAGATCATTAGAAAGAGTGTTTTATTCATATGTGATTTGTTGATTCCTTGTTTTAGATGGTCAAAGAGCGGTTGATGTGTCCAGACTCTCAAGAAAAGGGTTGGCTTTTAGATGGATATCCTCGGAGCTTGTCTCAAGCAGTAGCTCTCAAAGAGTTCCAGCCAAACCTTTTCATTCTTCTGGAA</genome_strand>
        <mrna_strand>ACACTGAGATCTCTATTTAGCACGGAGCAGAAGCGCCATGGCTTCGTGCTGTTCATTGAGCTTCTCAACAGTCTCTTCAAAGCCTAACAAGCCTTACTCATCACCAATTTCTTCTTCTCTTGAGCTCCCCTTTACTTCCCAGTTGCCATTTTCTAAAAAATATTCACTTTATTCCAATCATACCCTTCTCCAAACTCAATGCCGGAAAACCCAATCACCGGATTGTCCCAGTTTCTTG...........................................................................................................................................................................................................................................................................................................................GTTGTGGGATCTGCGAAAAAGCAAGAACCTTTGAGGGTAATGATATCGGGAGCTCCTGCTTCTGGTAAAGGAACGCAATGCGAGCTCATTACCAAGAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACGATTTGGTGCATATTGCTGCTGGAGATTTATTGAGGGCTGAAATTGCTGCAGGCACTGAAAATGGGAGGAGAGCAAAGGAGTATATGGATAAAGGACAATTGGTACCAAACGAGATAGTTGTAACG....................................................................................................................ATGGTCAAAGAGCGGTTGATGTGTCCAGACTCTCAAGAAAAGGGTTGGCTTTTAGATGGATATCCTCGGAGCTTGTCTCAAGCAGTAGCTCTCAAAGAGTTCCAGCCAAACCTTTTCATTCTTCTGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E319211" ref_strand="+" ref_description="SGN-E319211 [cTOB-16-J6]">
      <seq>acactgagatctctatttagcacggagcagaagcgccatggcttcgtgctgttcattgagcttctcaacagtctcttcaaagcctaacaagccttactcatcaccaatttcttcttctcttgagctcccctttacttcccagttgccattttctaaaaaatattcactttattccaatcatacccttctccaaactcaatgccggaaaacccaatcaccggattgtcccagtttcttggttgtgggatctgcgaaaaagcaagaacctttgagggtaatgatatcgggagctcctgcttctggtaaaggaacgcaatgcgagctcattaccaagaagtacgatttggtgcatattgctgctggagatttattgagggctgaaattgctgcaggcactgaaaatgggaggagagcaaaggagtatatggataaaggacaattggtaccaaacgagatagttgtaacgatggtcaaagagcggttgatgtgtccagactctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0132E21.2" temp_strand="+" temp_description="C06SLm0132E21.2  AC211087.2 htgs_phase:3 submitted_to_sgn_as:C06SLm0132E21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="41552" stop="44168"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41852" g_stop="42089" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="238" r_length="238" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42090" i_stop="42404" i_length="315">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42405" g_stop="42503" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="337" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42504" i_stop="43589" i_length="1086">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43590" g_stop="43718" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="466" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43719" i_stop="43834" i_length="116">
            <donor d_prob="0.475" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43835" g_stop="43868" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="467" r_stop="500" r_length="34" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0132E21.2" gen_strand="+" ref_id="SGN-E319211" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>500</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0132E21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E319211" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41852" e_stop="42089"/>
          <exon e_start="42405" e_stop="42503"/>
          <exon e_start="43590" e_stop="43718"/>
          <exon e_start="43835" e_stop="43868"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACTGAGATCTCTATTTAGCACGGAGCAGAAGCGCCATGGCTTCGTGCTGTTCATTGAGCTTCTCAACAGTCTCTTCAAAGCCTAACAAGCCTTACTCATCACCAATTTCTTCTTCTCTTGAGCTCCCCTTTACTTCCCAGTTGCCATTTTCTAAAAAATATTCACTTTATTCCAATCATACCCTTCTCCAAACTCAATGCCGGAAAACCCAATCACCGGATTGTCCCAGTTTCTTGGTACGTCTTGCAATTCTTTTGACACCCTTTTGATTTTCACGTTCAATTTTGAGTTTAGAAAAGTGAGCCCAGAATTTGAAATTAGTAATAGGTTGTATTGAACATAAATGTATATTGAAGAGTTTTACTACGCAGCTGTTGGTTTACAATATATTTCATGCTCAATCGAATGAGATGACTTGAAAGAGTTAGACTTTAGTTTGGGACTGAGATGTAGTTGATTGATTGTTTTTTTGGTATGGCTTTGTGTAGTGGCTGAGTTTTAGCCAAAAAGGGAAACTTGATTAGTGATTGAATTGTATTTTTGTGATTTAGGTTGTGGGATCTGCGAAAAAGCAAGAACCTTTGAGGGTAATGATATCGGGAGCTCCTGCTTCTGGTAAAGGAACGCAATGCGAGCTCATTACCAAGAAGGTAATGGTTCTTTTTTTTTTCTTCATAGGGACAAGTTGGTTGTTATGATCTTTTATGTTTGAATTATCTTTATGCTGTTCTATGTAGGTTTCTCTTTTTGGAATGGATGATGATCCATTGGGATTTTGGTTTTATAATTCTGAATATGAAATCTCTATTCTTGAAAGTTTATCTACTAATATAAATCGTCCCAATTTCCACTAATATGTGTGTTATAGACCAGGTTGTACAATATAGAGGTATACTTCCATTCATGACTTCTGACCATGGGTGTTTCTAAATTTGAGGACCAGTTTTTTACCATATTACTGGTATCATTCTACCCAGGACCTCTTATGACTTGACCCTTACTCCATTTGGTTCGTAGACTGATAACACAAGAACTGGTATGTGGGGATTGTTATACACTGATTGACAATACCGGCATGGTTAATACCAGTATTAGCTATGCATGTTGTATATCTAGTATAAGTCACAGGGTGATACACCTCTTTTACCACAGCCTAAAAAAGCAGAATTATCAGATTTATCTGCACTCTTGTAAACTAAAATCATCATGTAAATTTGTCCAGTTATCAGATTTGTCTTGAAAAGCATCTTACTAGCATCTGTTCAGCTGTTCCATATATTTACGTTATTTCCTTAGCATAACATGTATGTCTCCTATGTGTATTCTCTTACAATTCACTGGTACCTTGTTCCCTAGCCTCTTTATCTTGTTTATTATGAATTCTCATCTGGTTCCTCTAAATTCTCATTGGTGGGTTTGTAATATTTCCTTCAGCCGAAATTGTCCATATTATAATCAACTTTATCTTAATTATTAGCAAGTCCCTGCTACTTGAACTCACATTCTTCACATTTCTTGATTGATTTAGCTTTAGTTTGATTTCCATGCTCCTTATTCCTTCCCTTGTTTAACATGTAGTTGTAAAAAGGTATGTTGCTAGTAGCATTTGATGTTCCATTTCAAAAAATGTCTCTAGTTGCAGTCGATGTTAGTTGCTACCTTAATTACCCATTTTCCTTGTTATGTATTACCCTGTGAGAAGTAATAAATTGAATACCGTGAGCTCATATATGCAGTACGATTTGGTGCATATTGCTGCTGGAGATTTATTGAGGGCTGAAATTGCTGCAGGCACTGAAAATGGGAGGAGAGCAAAGGAGTATATGGATAAAGGACAATTGGTACCAAACGAGATAGTTGTAACGGTAGGTTTACCTGGCAAACTGGTTCCTGCTTTTGTTAGCATGCTATTTTAAAGGTTGAAAGAGATCATTAGAAAGAGTGTTTTATTCATATGTGATTTGTTGATTCCTTGTTTTAGATGGTCAAAGAGCGGTTGATGTGTCCAGACTCTC</genome_strand>
        <mrna_strand>ACACTGAGATCTCTATTTAGCACGGAGCAGAAGCGCCATGGCTTCGTGCTGTTCATTGAGCTTCTCAACAGTCTCTTCAAAGCCTAACAAGCCTTACTCATCACCAATTTCTTCTTCTCTTGAGCTCCCCTTTACTTCCCAGTTGCCATTTTCTAAAAAATATTCACTTTATTCCAATCATACCCTTCTCCAAACTCAATGCCGGAAAACCCAATCACCGGATTGTCCCAGTTTCTTG...........................................................................................................................................................................................................................................................................................................................GTTGTGGGATCTGCGAAAAAGCAAGAACCTTTGAGGGTAATGATATCGGGAGCTCCTGCTTCTGGTAAAGGAACGCAATGCGAGCTCATTACCAAGAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACGATTTGGTGCATATTGCTGCTGGAGATTTATTGAGGGCTGAAATTGCTGCAGGCACTGAAAATGGGAGGAGAGCAAAGGAGTATATGGATAAAGGACAATTGGTACCAAACGAGATAGTTGTAACG....................................................................................................................ATGGTCAAAGAGCGGTTGATGTGTCCAGACTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E256552" ref_strand="+" ref_description="SGN-E256552 [cLEG-38-E10]">
      <seq>acactgagatctctatttagcacagagcagaagcgccatggcttcgtgctgtgcattgagcttctcaacagtctcttcaaagcctaacaagccttactcatcaccaatttcttcttctcttgagctcccctttacttcccagttgccattttctaaaaaatattcactttattccaatcatacccttctccaaactcaatgccggaaaacccaatcaccggattgtcccagtttcttggttgtgggatctgcgaaaaagcaagaacctttgagggtaatgatatcgggagctcctgcttctggtaaaggaacgcaatgcgagctcattaccaagaagtacgatttggtgcatattgctgctggagatttattgagggctgaaattgctgcaggcactgaaaatgggaggagagcaaaggagtatatggataaaggacaattggtaccaaacgagatagttgtaacgatggtcaaagagcggttgatgtgtccagactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0132E21.2" temp_strand="+" temp_description="C06SLm0132E21.2  AC211087.2 htgs_phase:3 submitted_to_sgn_as:C06SLm0132E21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="41552" stop="44166"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41852" g_stop="42089" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="238" r_length="238" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42090" i_stop="42404" i_length="315">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42405" g_stop="42503" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="337" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42504" i_stop="43589" i_length="1086">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43590" g_stop="43718" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="466" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43719" i_stop="43834" i_length="116">
            <donor d_prob="0.475" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43835" g_stop="43866" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="467" r_stop="498" r_length="32" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0132E21.2" gen_strand="+" ref_id="SGN-E256552" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>498</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0132E21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E256552" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41852" e_stop="42089"/>
          <exon e_start="42405" e_stop="42503"/>
          <exon e_start="43590" e_stop="43718"/>
          <exon e_start="43835" e_stop="43866"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACTGAGATCTCTATTTAGCACGGAGCAGAAGCGCCATGGCTTCGTGCTGTTCATTGAGCTTCTCAACAGTCTCTTCAAAGCCTAACAAGCCTTACTCATCACCAATTTCTTCTTCTCTTGAGCTCCCCTTTACTTCCCAGTTGCCATTTTCTAAAAAATATTCACTTTATTCCAATCATACCCTTCTCCAAACTCAATGCCGGAAAACCCAATCACCGGATTGTCCCAGTTTCTTGGTACGTCTTGCAATTCTTTTGACACCCTTTTGATTTTCACGTTCAATTTTGAGTTTAGAAAAGTGAGCCCAGAATTTGAAATTAGTAATAGGTTGTATTGAACATAAATGTATATTGAAGAGTTTTACTACGCAGCTGTTGGTTTACAATATATTTCATGCTCAATCGAATGAGATGACTTGAAAGAGTTAGACTTTAGTTTGGGACTGAGATGTAGTTGATTGATTGTTTTTTTGGTATGGCTTTGTGTAGTGGCTGAGTTTTAGCCAAAAAGGGAAACTTGATTAGTGATTGAATTGTATTTTTGTGATTTAGGTTGTGGGATCTGCGAAAAAGCAAGAACCTTTGAGGGTAATGATATCGGGAGCTCCTGCTTCTGGTAAAGGAACGCAATGCGAGCTCATTACCAAGAAGGTAATGGTTCTTTTTTTTTTCTTCATAGGGACAAGTTGGTTGTTATGATCTTTTATGTTTGAATTATCTTTATGCTGTTCTATGTAGGTTTCTCTTTTTGGAATGGATGATGATCCATTGGGATTTTGGTTTTATAATTCTGAATATGAAATCTCTATTCTTGAAAGTTTATCTACTAATATAAATCGTCCCAATTTCCACTAATATGTGTGTTATAGACCAGGTTGTACAATATAGAGGTATACTTCCATTCATGACTTCTGACCATGGGTGTTTCTAAATTTGAGGACCAGTTTTTTACCATATTACTGGTATCATTCTACCCAGGACCTCTTATGACTTGACCCTTACTCCATTTGGTTCGTAGACTGATAACACAAGAACTGGTATGTGGGGATTGTTATACACTGATTGACAATACCGGCATGGTTAATACCAGTATTAGCTATGCATGTTGTATATCTAGTATAAGTCACAGGGTGATACACCTCTTTTACCACAGCCTAAAAAAGCAGAATTATCAGATTTATCTGCACTCTTGTAAACTAAAATCATCATGTAAATTTGTCCAGTTATCAGATTTGTCTTGAAAAGCATCTTACTAGCATCTGTTCAGCTGTTCCATATATTTACGTTATTTCCTTAGCATAACATGTATGTCTCCTATGTGTATTCTCTTACAATTCACTGGTACCTTGTTCCCTAGCCTCTTTATCTTGTTTATTATGAATTCTCATCTGGTTCCTCTAAATTCTCATTGGTGGGTTTGTAATATTTCCTTCAGCCGAAATTGTCCATATTATAATCAACTTTATCTTAATTATTAGCAAGTCCCTGCTACTTGAACTCACATTCTTCACATTTCTTGATTGATTTAGCTTTAGTTTGATTTCCATGCTCCTTATTCCTTCCCTTGTTTAACATGTAGTTGTAAAAAGGTATGTTGCTAGTAGCATTTGATGTTCCATTTCAAAAAATGTCTCTAGTTGCAGTCGATGTTAGTTGCTACCTTAATTACCCATTTTCCTTGTTATGTATTACCCTGTGAGAAGTAATAAATTGAATACCGTGAGCTCATATATGCAGTACGATTTGGTGCATATTGCTGCTGGAGATTTATTGAGGGCTGAAATTGCTGCAGGCACTGAAAATGGGAGGAGAGCAAAGGAGTATATGGATAAAGGACAATTGGTACCAAACGAGATAGTTGTAACGGTAGGTTTACCTGGCAAACTGGTTCCTGCTTTTGTTAGCATGCTATTTTAAAGGTTGAAAGAGATCATTAGAAAGAGTGTTTTATTCATATGTGATTTGTTGATTCCTTGTTTTAGATGGTCAAAGAGCGGTTGATGTGTCCAGACTC</genome_strand>
        <mrna_strand>ACACTGAGATCTCTATTTAGCACAGAGCAGAAGCGCCATGGCTTCGTGCTGTGCATTGAGCTTCTCAACAGTCTCTTCAAAGCCTAACAAGCCTTACTCATCACCAATTTCTTCTTCTCTTGAGCTCCCCTTTACTTCCCAGTTGCCATTTTCTAAAAAATATTCACTTTATTCCAATCATACCCTTCTCCAAACTCAATGCCGGAAAACCCAATCACCGGATTGTCCCAGTTTCTTG...........................................................................................................................................................................................................................................................................................................................GTTGTGGGATCTGCGAAAAAGCAAGAACCTTTGAGGGTAATGATATCGGGAGCTCCTGCTTCTGGTAAAGGAACGCAATGCGAGCTCATTACCAAGAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACGATTTGGTGCATATTGCTGCTGGAGATTTATTGAGGGCTGAAATTGCTGCAGGCACTGAAAATGGGAGGAGAGCAAAGGAGTATATGGATAAAGGACAATTGGTACCAAACGAGATAGTTGTAACG....................................................................................................................ATGGTCAAAGAGCGGTTGATGTGTCCAGACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E260200" ref_strand="+" ref_description="SGN-E260200 [cLEG-52-P20]">
      <seq>acactgagatctctatttagcacagagcagaagcgccatggcttcgtgctgttcattgagcttctcaacagtctcttcaaagcctaacaagccttactcatcaccaatttcttcttctcttgagctcccctttacttcccagttgccattttctaaaaaatattcactttattccaatcatacccttctccaaactcaatgccggaaaacccaatcaccggattgtcccagtttcttggttgtgggatctgcgaaaaagcaagaacctttgagggtaatgatatcgggagctcctgcttctggtaaaggaacgcaatgcgagctcattaccaagaagtacgatttggtgcatattgctgctggagatttattgagggctgaaattgctgcaggcactgaaaatgggaggagagcaaaggagtatatggataaaggacaattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0132E21.2" temp_strand="+" temp_description="C06SLm0132E21.2  AC211087.2 htgs_phase:3 submitted_to_sgn_as:C06SLm0132E21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="41552" stop="43994"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41852" g_stop="42089" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="238" r_length="238" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42090" i_stop="42404" i_length="315">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42405" g_stop="42503" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="337" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42504" i_stop="43589" i_length="1086">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43590" g_stop="43694" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="442" r_length="105" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0132E21.2" gen_strand="+" ref_id="SGN-E260200" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>442</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0132E21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E260200" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41852" e_stop="42089"/>
          <exon e_start="42405" e_stop="42503"/>
          <exon e_start="43590" e_stop="43694"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACTGAGATCTCTATTTAGCACGGAGCAGAAGCGCCATGGCTTCGTGCTGTTCATTGAGCTTCTCAACAGTCTCTTCAAAGCCTAACAAGCCTTACTCATCACCAATTTCTTCTTCTCTTGAGCTCCCCTTTACTTCCCAGTTGCCATTTTCTAAAAAATATTCACTTTATTCCAATCATACCCTTCTCCAAACTCAATGCCGGAAAACCCAATCACCGGATTGTCCCAGTTTCTTGGTACGTCTTGCAATTCTTTTGACACCCTTTTGATTTTCACGTTCAATTTTGAGTTTAGAAAAGTGAGCCCAGAATTTGAAATTAGTAATAGGTTGTATTGAACATAAATGTATATTGAAGAGTTTTACTACGCAGCTGTTGGTTTACAATATATTTCATGCTCAATCGAATGAGATGACTTGAAAGAGTTAGACTTTAGTTTGGGACTGAGATGTAGTTGATTGATTGTTTTTTTGGTATGGCTTTGTGTAGTGGCTGAGTTTTAGCCAAAAAGGGAAACTTGATTAGTGATTGAATTGTATTTTTGTGATTTAGGTTGTGGGATCTGCGAAAAAGCAAGAACCTTTGAGGGTAATGATATCGGGAGCTCCTGCTTCTGGTAAAGGAACGCAATGCGAGCTCATTACCAAGAAGGTAATGGTTCTTTTTTTTTTCTTCATAGGGACAAGTTGGTTGTTATGATCTTTTATGTTTGAATTATCTTTATGCTGTTCTATGTAGGTTTCTCTTTTTGGAATGGATGATGATCCATTGGGATTTTGGTTTTATAATTCTGAATATGAAATCTCTATTCTTGAAAGTTTATCTACTAATATAAATCGTCCCAATTTCCACTAATATGTGTGTTATAGACCAGGTTGTACAATATAGAGGTATACTTCCATTCATGACTTCTGACCATGGGTGTTTCTAAATTTGAGGACCAGTTTTTTACCATATTACTGGTATCATTCTACCCAGGACCTCTTATGACTTGACCCTTACTCCATTTGGTTCGTAGACTGATAACACAAGAACTGGTATGTGGGGATTGTTATACACTGATTGACAATACCGGCATGGTTAATACCAGTATTAGCTATGCATGTTGTATATCTAGTATAAGTCACAGGGTGATACACCTCTTTTACCACAGCCTAAAAAAGCAGAATTATCAGATTTATCTGCACTCTTGTAAACTAAAATCATCATGTAAATTTGTCCAGTTATCAGATTTGTCTTGAAAAGCATCTTACTAGCATCTGTTCAGCTGTTCCATATATTTACGTTATTTCCTTAGCATAACATGTATGTCTCCTATGTGTATTCTCTTACAATTCACTGGTACCTTGTTCCCTAGCCTCTTTATCTTGTTTATTATGAATTCTCATCTGGTTCCTCTAAATTCTCATTGGTGGGTTTGTAATATTTCCTTCAGCCGAAATTGTCCATATTATAATCAACTTTATCTTAATTATTAGCAAGTCCCTGCTACTTGAACTCACATTCTTCACATTTCTTGATTGATTTAGCTTTAGTTTGATTTCCATGCTCCTTATTCCTTCCCTTGTTTAACATGTAGTTGTAAAAAGGTATGTTGCTAGTAGCATTTGATGTTCCATTTCAAAAAATGTCTCTAGTTGCAGTCGATGTTAGTTGCTACCTTAATTACCCATTTTCCTTGTTATGTATTACCCTGTGAGAAGTAATAAATTGAATACCGTGAGCTCATATATGCAGTACGATTTGGTGCATATTGCTGCTGGAGATTTATTGAGGGCTGAAATTGCTGCAGGCACTGAAAATGGGAGGAGAGCAAAGGAGTATATGGATAAAGGACAATTG</genome_strand>
        <mrna_strand>ACACTGAGATCTCTATTTAGCACAGAGCAGAAGCGCCATGGCTTCGTGCTGTTCATTGAGCTTCTCAACAGTCTCTTCAAAGCCTAACAAGCCTTACTCATCACCAATTTCTTCTTCTCTTGAGCTCCCCTTTACTTCCCAGTTGCCATTTTCTAAAAAATATTCACTTTATTCCAATCATACCCTTCTCCAAACTCAATGCCGGAAAACCCAATCACCGGATTGTCCCAGTTTCTTG...........................................................................................................................................................................................................................................................................................................................GTTGTGGGATCTGCGAAAAAGCAAGAACCTTTGAGGGTAATGATATCGGGAGCTCCTGCTTCTGGTAAAGGAACGCAATGCGAGCTCATTACCAAGAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACGATTTGGTGCATATTGCTGCTGGAGATTTATTGAGGGCTGAAATTGCTGCAGGCACTGAAAATGGGAGGAGAGCAAAGGAGTATATGGATAAAGGACAATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E256949" ref_strand="+" ref_description="SGN-E256949 [cLEG-44-B19]">
      <seq>acactgagatctctatttagcacagagcagaagcgccatggcttcgtgctgttcattgagcttctcaacagtctcttcaaagcctaacaagccttactcatcaccaatttcttcttctcttgagctcccctttacttcccagttgccattttctaaaaaatattcactttattccaatcatacccttctccaaactcaatgccggaaaacccaatcaccggattgtcccagattcttggttgtgggatctgcgaaaaagcaagaacctttgacggtaatgatatcgggagctcctgcttctggtaaaggaacgcaatgcgagctcattaccaagaagtacgatttggtgcatattgctgctggagatttattgagggctgaaattgctgcacgcactgaaaatgggaggagagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0132E21.2" temp_strand="+" temp_description="C06SLm0132E21.2  AC211087.2 htgs_phase:3 submitted_to_sgn_as:C06SLm0132E21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="41552" stop="43966"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41852" g_stop="42089" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="238" r_length="238" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42090" i_stop="42404" i_length="315">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42405" g_stop="42503" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="337" r_length="99" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42504" i_stop="43589" i_length="1086">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43590" g_stop="43666" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="414" r_length="77" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0132E21.2" gen_strand="+" ref_id="SGN-E256949" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>414</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0132E21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E256949" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41852" e_stop="42089"/>
          <exon e_start="42405" e_stop="42503"/>
          <exon e_start="43590" e_stop="43666"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACTGAGATCTCTATTTAGCACGGAGCAGAAGCGCCATGGCTTCGTGCTGTTCATTGAGCTTCTCAACAGTCTCTTCAAAGCCTAACAAGCCTTACTCATCACCAATTTCTTCTTCTCTTGAGCTCCCCTTTACTTCCCAGTTGCCATTTTCTAAAAAATATTCACTTTATTCCAATCATACCCTTCTCCAAACTCAATGCCGGAAAACCCAATCACCGGATTGTCCCAGTTTCTTGGTACGTCTTGCAATTCTTTTGACACCCTTTTGATTTTCACGTTCAATTTTGAGTTTAGAAAAGTGAGCCCAGAATTTGAAATTAGTAATAGGTTGTATTGAACATAAATGTATATTGAAGAGTTTTACTACGCAGCTGTTGGTTTACAATATATTTCATGCTCAATCGAATGAGATGACTTGAAAGAGTTAGACTTTAGTTTGGGACTGAGATGTAGTTGATTGATTGTTTTTTTGGTATGGCTTTGTGTAGTGGCTGAGTTTTAGCCAAAAAGGGAAACTTGATTAGTGATTGAATTGTATTTTTGTGATTTAGGTTGTGGGATCTGCGAAAAAGCAAGAACCTTTGAGGGTAATGATATCGGGAGCTCCTGCTTCTGGTAAAGGAACGCAATGCGAGCTCATTACCAAGAAGGTAATGGTTCTTTTTTTTTTCTTCATAGGGACAAGTTGGTTGTTATGATCTTTTATGTTTGAATTATCTTTATGCTGTTCTATGTAGGTTTCTCTTTTTGGAATGGATGATGATCCATTGGGATTTTGGTTTTATAATTCTGAATATGAAATCTCTATTCTTGAAAGTTTATCTACTAATATAAATCGTCCCAATTTCCACTAATATGTGTGTTATAGACCAGGTTGTACAATATAGAGGTATACTTCCATTCATGACTTCTGACCATGGGTGTTTCTAAATTTGAGGACCAGTTTTTTACCATATTACTGGTATCATTCTACCCAGGACCTCTTATGACTTGACCCTTACTCCATTTGGTTCGTAGACTGATAACACAAGAACTGGTATGTGGGGATTGTTATACACTGATTGACAATACCGGCATGGTTAATACCAGTATTAGCTATGCATGTTGTATATCTAGTATAAGTCACAGGGTGATACACCTCTTTTACCACAGCCTAAAAAAGCAGAATTATCAGATTTATCTGCACTCTTGTAAACTAAAATCATCATGTAAATTTGTCCAGTTATCAGATTTGTCTTGAAAAGCATCTTACTAGCATCTGTTCAGCTGTTCCATATATTTACGTTATTTCCTTAGCATAACATGTATGTCTCCTATGTGTATTCTCTTACAATTCACTGGTACCTTGTTCCCTAGCCTCTTTATCTTGTTTATTATGAATTCTCATCTGGTTCCTCTAAATTCTCATTGGTGGGTTTGTAATATTTCCTTCAGCCGAAATTGTCCATATTATAATCAACTTTATCTTAATTATTAGCAAGTCCCTGCTACTTGAACTCACATTCTTCACATTTCTTGATTGATTTAGCTTTAGTTTGATTTCCATGCTCCTTATTCCTTCCCTTGTTTAACATGTAGTTGTAAAAAGGTATGTTGCTAGTAGCATTTGATGTTCCATTTCAAAAAATGTCTCTAGTTGCAGTCGATGTTAGTTGCTACCTTAATTACCCATTTTCCTTGTTATGTATTACCCTGTGAGAAGTAATAAATTGAATACCGTGAGCTCATATATGCAGTACGATTTGGTGCATATTGCTGCTGGAGATTTATTGAGGGCTGAAATTGCTGCAGGCACTGAAAATGGGAGGAGAGC</genome_strand>
        <mrna_strand>ACACTGAGATCTCTATTTAGCACAGAGCAGAAGCGCCATGGCTTCGTGCTGTTCATTGAGCTTCTCAACAGTCTCTTCAAAGCCTAACAAGCCTTACTCATCACCAATTTCTTCTTCTCTTGAGCTCCCCTTTACTTCCCAGTTGCCATTTTCTAAAAAATATTCACTTTATTCCAATCATACCCTTCTCCAAACTCAATGCCGGAAAACCCAATCACCGGATTGTCCCAGATTCTTG...........................................................................................................................................................................................................................................................................................................................GTTGTGGGATCTGCGAAAAAGCAAGAACCTTTGACGGTAATGATATCGGGAGCTCCTGCTTCTGGTAAAGGAACGCAATGCGAGCTCATTACCAAGAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACGATTTGGTGCATATTGCTGCTGGAGATTTATTGAGGGCTGAAATTGCTGCACGCACTGAAAATGGGAGGAGAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E254781" ref_strand="+" ref_description="SGN-E254781 [cLEG-33-O23]">
      <seq>acactgagatctctatttagcacagagcagaagcgccatggcttcgtgctgttcattgagcttctcaacagtctcttcaaagcctaacaagccttactcatcaccaatttcttcttctcttgagctcccctttacttcccagttgccattttctaaaaaatattcactttattccaatcatacccttctccaaactcaatgccggaaaacccaatcaccggattgtcccagtttcttggttgtgggatctgcgaaaaagcaagaacctttgagggtaatgatatcgggagctcctgcttctggtaaaggaacgcaatgcgagctcattaccaagaagtacgatttggtgcatattgctgctggagatttattgagggctgaaattgctgcaggcactgaaaatgggaggagag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0132E21.2" temp_strand="+" temp_description="C06SLm0132E21.2  AC211087.2 htgs_phase:3 submitted_to_sgn_as:C06SLm0132E21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="41552" stop="43965"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41852" g_stop="42089" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="238" r_length="238" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42090" i_stop="42404" i_length="315">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42405" g_stop="42503" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="337" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42504" i_stop="43589" i_length="1086">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43590" g_stop="43665" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="413" r_length="76" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0132E21.2" gen_strand="+" ref_id="SGN-E254781" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>413</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0132E21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E254781" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41852" e_stop="42089"/>
          <exon e_start="42405" e_stop="42503"/>
          <exon e_start="43590" e_stop="43665"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACTGAGATCTCTATTTAGCACGGAGCAGAAGCGCCATGGCTTCGTGCTGTTCATTGAGCTTCTCAACAGTCTCTTCAAAGCCTAACAAGCCTTACTCATCACCAATTTCTTCTTCTCTTGAGCTCCCCTTTACTTCCCAGTTGCCATTTTCTAAAAAATATTCACTTTATTCCAATCATACCCTTCTCCAAACTCAATGCCGGAAAACCCAATCACCGGATTGTCCCAGTTTCTTGGTACGTCTTGCAATTCTTTTGACACCCTTTTGATTTTCACGTTCAATTTTGAGTTTAGAAAAGTGAGCCCAGAATTTGAAATTAGTAATAGGTTGTATTGAACATAAATGTATATTGAAGAGTTTTACTACGCAGCTGTTGGTTTACAATATATTTCATGCTCAATCGAATGAGATGACTTGAAAGAGTTAGACTTTAGTTTGGGACTGAGATGTAGTTGATTGATTGTTTTTTTGGTATGGCTTTGTGTAGTGGCTGAGTTTTAGCCAAAAAGGGAAACTTGATTAGTGATTGAATTGTATTTTTGTGATTTAGGTTGTGGGATCTGCGAAAAAGCAAGAACCTTTGAGGGTAATGATATCGGGAGCTCCTGCTTCTGGTAAAGGAACGCAATGCGAGCTCATTACCAAGAAGGTAATGGTTCTTTTTTTTTTCTTCATAGGGACAAGTTGGTTGTTATGATCTTTTATGTTTGAATTATCTTTATGCTGTTCTATGTAGGTTTCTCTTTTTGGAATGGATGATGATCCATTGGGATTTTGGTTTTATAATTCTGAATATGAAATCTCTATTCTTGAAAGTTTATCTACTAATATAAATCGTCCCAATTTCCACTAATATGTGTGTTATAGACCAGGTTGTACAATATAGAGGTATACTTCCATTCATGACTTCTGACCATGGGTGTTTCTAAATTTGAGGACCAGTTTTTTACCATATTACTGGTATCATTCTACCCAGGACCTCTTATGACTTGACCCTTACTCCATTTGGTTCGTAGACTGATAACACAAGAACTGGTATGTGGGGATTGTTATACACTGATTGACAATACCGGCATGGTTAATACCAGTATTAGCTATGCATGTTGTATATCTAGTATAAGTCACAGGGTGATACACCTCTTTTACCACAGCCTAAAAAAGCAGAATTATCAGATTTATCTGCACTCTTGTAAACTAAAATCATCATGTAAATTTGTCCAGTTATCAGATTTGTCTTGAAAAGCATCTTACTAGCATCTGTTCAGCTGTTCCATATATTTACGTTATTTCCTTAGCATAACATGTATGTCTCCTATGTGTATTCTCTTACAATTCACTGGTACCTTGTTCCCTAGCCTCTTTATCTTGTTTATTATGAATTCTCATCTGGTTCCTCTAAATTCTCATTGGTGGGTTTGTAATATTTCCTTCAGCCGAAATTGTCCATATTATAATCAACTTTATCTTAATTATTAGCAAGTCCCTGCTACTTGAACTCACATTCTTCACATTTCTTGATTGATTTAGCTTTAGTTTGATTTCCATGCTCCTTATTCCTTCCCTTGTTTAACATGTAGTTGTAAAAAGGTATGTTGCTAGTAGCATTTGATGTTCCATTTCAAAAAATGTCTCTAGTTGCAGTCGATGTTAGTTGCTACCTTAATTACCCATTTTCCTTGTTATGTATTACCCTGTGAGAAGTAATAAATTGAATACCGTGAGCTCATATATGCAGTACGATTTGGTGCATATTGCTGCTGGAGATTTATTGAGGGCTGAAATTGCTGCAGGCACTGAAAATGGGAGGAGAG</genome_strand>
        <mrna_strand>ACACTGAGATCTCTATTTAGCACAGAGCAGAAGCGCCATGGCTTCGTGCTGTTCATTGAGCTTCTCAACAGTCTCTTCAAAGCCTAACAAGCCTTACTCATCACCAATTTCTTCTTCTCTTGAGCTCCCCTTTACTTCCCAGTTGCCATTTTCTAAAAAATATTCACTTTATTCCAATCATACCCTTCTCCAAACTCAATGCCGGAAAACCCAATCACCGGATTGTCCCAGTTTCTTG...........................................................................................................................................................................................................................................................................................................................GTTGTGGGATCTGCGAAAAAGCAAGAACCTTTGAGGGTAATGATATCGGGAGCTCCTGCTTCTGGTAAAGGAACGCAATGCGAGCTCATTACCAAGAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACGATTTGGTGCATATTGCTGCTGGAGATTTATTGAGGGCTGAAATTGCTGCAGGCACTGAAAATGGGAGGAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E707434" ref_strand="+" ref_description="SGN-E707434 [FA33AA05]">
      <seq>cacttgagatctctatttagcacggagcagaagcgccatggcttcgtgctgttcattgagcttctcaacagtctcttcaaagcctaacaagccttactcatcaccaatttcttcttctcttgagctcccctttacttcccagttgccattttctaaaaaatattcactttattccaatcatacccttctccaaactcaatgccggaaaacccaatcaccggattgtcccagtttcttggttgtgggatctgcgaaaaagcaagaacctttgagggtaatgatatcgggagctcctgcttctggtaaaggaacgcaatgcgagctcattaccaagaagtacgatttggtgcatattgctgctggagatttattgagggctgaaattgctgcaggcactgaaaatgggaggagagcaaaggagtatatggataaaggacaattggtaccaaacgagatagttgtaacgatggtcaaagagcggttgatgtgtccagactctcaagaaaagggttggcttttagatggatatcctcggagcttgtctcaagcagtagctctcaaagagttccagccaaaccttttcattcttctggaagtacctgaagagatacttgttgagagagtggttggccgtagactagatcctgtaactgggagaatataccatttgaagtattctccgccagagaccgatgaaatcgctgcaaggcttacccagcgctttgatgatacagaagaaaaggtgaagctgcgtctgcacactcaccgtcaaaatgtggaatcagttctctcaatgtacaaagatactatattccaggtggacgggagcgtttccaaagaggaagtatttgctcaaattgatggtgcattaactcaactttcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0132E21.2" temp_strand="+" temp_description="C06SLm0132E21.2  AC211087.2 htgs_phase:3 submitted_to_sgn_as:C06SLm0132E21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="41553" stop="46155"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41853" g_stop="42089" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="238" r_length="238" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42090" i_stop="42404" i_length="315">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42405" g_stop="42503" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="337" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42504" i_stop="43589" i_length="1086">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43590" g_stop="43718" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="466" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43719" i_stop="43834" i_length="116">
            <donor d_prob="0.475" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43835" g_stop="43963" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="467" r_stop="595" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="43964" i_stop="44564" i_length="601">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="44565" g_stop="44711" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="596" r_stop="742" r_length="147" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="44712" i_stop="45101" i_length="390">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="45102" g_stop="45176" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="743" r_stop="817" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="45177" i_stop="45788" i_length="612">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="45789" g_stop="45855" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="818" r_stop="885" r_length="68" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0132E21.2" gen_strand="+" ref_id="SGN-E707434" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>883</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0132E21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E707434" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41853" e_stop="42089"/>
          <exon e_start="42405" e_stop="42503"/>
          <exon e_start="43590" e_stop="43718"/>
          <exon e_start="43835" e_stop="43963"/>
          <exon e_start="44565" e_stop="44711"/>
          <exon e_start="45102" e_stop="45176"/>
          <exon e_start="45789" e_stop="45855"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAC-TGAGATCTCTATTTAGCACGGAGCAGAAGCGCCATGGCTTCGTGCTGTTCATTGAGCTTCTCAACAGTCTCTTCAAAGCCTAACAAGCCTTACTCATCACCAATTTCTTCTTCTCTTGAGCTCCCCTTTACTTCCCAGTTGCCATTTTCTAAAAAATATTCACTTTATTCCAATCATACCCTTCTCCAAACTCAATGCCGGAAAACCCAATCACCGGATTGTCCCAGTTTCTTGGTACGTCTTGCAATTCTTTTGACACCCTTTTGATTTTCACGTTCAATTTTGAGTTTAGAAAAGTGAGCCCAGAATTTGAAATTAGTAATAGGTTGTATTGAACATAAATGTATATTGAAGAGTTTTACTACGCAGCTGTTGGTTTACAATATATTTCATGCTCAATCGAATGAGATGACTTGAAAGAGTTAGACTTTAGTTTGGGACTGAGATGTAGTTGATTGATTGTTTTTTTGGTATGGCTTTGTGTAGTGGCTGAGTTTTAGCCAAAAAGGGAAACTTGATTAGTGATTGAATTGTATTTTTGTGATTTAGGTTGTGGGATCTGCGAAAAAGCAAGAACCTTTGAGGGTAATGATATCGGGAGCTCCTGCTTCTGGTAAAGGAACGCAATGCGAGCTCATTACCAAGAAGGTAATGGTTCTTTTTTTTTTCTTCATAGGGACAAGTTGGTTGTTATGATCTTTTATGTTTGAATTATCTTTATGCTGTTCTATGTAGGTTTCTCTTTTTGGAATGGATGATGATCCATTGGGATTTTGGTTTTATAATTCTGAATATGAAATCTCTATTCTTGAAAGTTTATCTACTAATATAAATCGTCCCAATTTCCACTAATATGTGTGTTATAGACCAGGTTGTACAATATAGAGGTATACTTCCATTCATGACTTCTGACCATGGGTGTTTCTAAATTTGAGGACCAGTTTTTTACCATATTACTGGTATCATTCTACCCAGGACCTCTTATGACTTGACCCTTACTCCATTTGGTTCGTAGACTGATAACACAAGAACTGGTATGTGGGGATTGTTATACACTGATTGACAATACCGGCATGGTTAATACCAGTATTAGCTATGCATGTTGTATATCTAGTATAAGTCACAGGGTGATACACCTCTTTTACCACAGCCTAAAAAAGCAGAATTATCAGATTTATCTGCACTCTTGTAAACTAAAATCATCATGTAAATTTGTCCAGTTATCAGATTTGTCTTGAAAAGCATCTTACTAGCATCTGTTCAGCTGTTCCATATATTTACGTTATTTCCTTAGCATAACATGTATGTCTCCTATGTGTATTCTCTTACAATTCACTGGTACCTTGTTCCCTAGCCTCTTTATCTTGTTTATTATGAATTCTCATCTGGTTCCTCTAAATTCTCATTGGTGGGTTTGTAATATTTCCTTCAGCCGAAATTGTCCATATTATAATCAACTTTATCTTAATTATTAGCAAGTCCCTGCTACTTGAACTCACATTCTTCACATTTCTTGATTGATTTAGCTTTAGTTTGATTTCCATGCTCCTTATTCCTTCCCTTGTTTAACATGTAGTTGTAAAAAGGTATGTTGCTAGTAGCATTTGATGTTCCATTTCAAAAAATGTCTCTAGTTGCAGTCGATGTTAGTTGCTACCTTAATTACCCATTTTCCTTGTTATGTATTACCCTGTGAGAAGTAATAAATTGAATACCGTGAGCTCATATATGCAGTACGATTTGGTGCATATTGCTGCTGGAGATTTATTGAGGGCTGAAATTGCTGCAGGCACTGAAAATGGGAGGAGAGCAAAGGAGTATATGGATAAAGGACAATTGGTACCAAACGAGATAGTTGTAACGGTAGGTTTACCTGGCAAACTGGTTCCTGCTTTTGTTAGCATGCTATTTTAAAGGTTGAAAGAGATCATTAGAAAGAGTGTTTTATTCATATGTGATTTGTTGATTCCTTGTTTTAGATGGTCAAAGAGCGGTTGATGTGTCCAGACTCTCAAGAAAAGGGTTGGCTTTTAGATGGATATCCTCGGAGCTTGTCTCAAGCAGTAGCTCTCAAAGAGTTCCAGCCAAACCTTTTCATTCTTCTGGAAGTGAGGTTCTGCTATTGATATCCTCTGATTGTGTTCTCAATCTCTTTCTAGTTAAAGCCTTAAGAGGATGAAAAGGATCAACATAGAGTATCCTGCATTTAAAATTTACCTGAAAAAATCTTTGAACGGGAAAACTGTGCTTTTGGTCTGTGAAAACCTAATTTTAGCCTTCAATTGAGAGAACTGTGCGCTTTTGGTTCCTCCTCTAGCATATTTCCCTACAAGAGTCAGATTACTTCCTTAAAATGCAAAAGAGTATCAAAATAACTTTCTTAGCATAAAAGGTGAATAGTTGTATGGTTTAATAGTTGTACTTTCATGGAATTTATCAGTTGAGGGACCAAAAGCTGATACTATCAGTTGGAGGTTTAGTGGGCTTGACTGAATACTGTGATTCGTTAGTACCAAGATTACAACTTACAAATAACCAAAAAAAAATTATTTTTTTCCTTATTTTAAATATGATTAGTTTTTTCTGATTCTTTTTTGTTTCACATGTCGTATATTAAACTGCAAGAGGTTTCAGAATAAATGCACCTTCATCGAGTCATCAACCAATGTTTTAACTTTTAACAGGAACACGTTATATTGTAAATGATAGGTACCTGAAGAGATACTTGTTGAGAGAGTGGTTGGCCGTAGACTAGATCCTGTAACTGGGAGAATATACCATTTGAAGTATTCTCCGCCAGAGACCGATGAAATCGCTGCAAGGCTTACCCAGCGCTTTGATGATACAGAAGAAAAGGCATGTTAATGCATGAATACGTACATTATTGTTGCTACAACTGCTGTAGGGCTTTTCCTTTTGTATGAAGCTTTTAAATCACGTAAACTTTTTTAATTCTTATTTGGTGGAAGCCTACCGTTTGTCCCATTGGTCATTTCTTGACCTTCTAATCAAACCATTTTAATCTATTCTCCTCCTGGAAATTTTGTTGCAGGTCTCGAAATTTCCATTTTCAACTAAATCTTTCTTTTAGCTATTTCCTTTATCATTCTTGCTGTCCTTTTCCCTTGCTTACTCAAGTCGCTTTGTAGATAACTGACTTAAGTATAGGTTTCTATAACATTATAAATAATGTTGTGTGATCAGCTTCATTTTTGTCTAATTTCTTTTTCAATTTACCGTTTACAGGTGAAGCTGCGTCTGCACACTCACCGTCAAAATGTGGAATCAGTTCTCTCAATGTACAAAGATACTATATTCCAGGTATTCTTTTTGCCACAGATGTGGTGCAGTTGCTTCACTCGGGAATGCAGATTGAAACACTCATCAGTCACCATCAAAGTGTGGAATCATTCCTTATATACTTGATTCATAGTTTATTGGGTTGTTTGATGGTTTACAAGGTCTTGGTTAACAGGAATATAGTCCATAAAAGACAATGTGGAAGGGACTCGGTGGAAATGGTTCGATGAGAAAGTAGTTTGGTTTTCTATTTGGCAAAAGAACAATGATATGGTTATAAAATTTCGTTGTTTGACATGTAGGTTACAAAATGATTACTTTAAATTATCTTCAGTTCATCCAGGTCATCCTTCCTCATAACAGTTGTAAAACAAAGGAAAGCCAAAGCAAAAGGGCTATACATCCTCTTTTATCTTAAAATTTACTCAATAAGCTAAAGGAAGAGTAAATCCTTTTGAGTATTACATTCATACTAATCAATCTGGGGGGAAATATACTTAATCAAGGACTCCCCTTCCCTCTTCAATGAACAAGGATACTGTATGTTCTTTCTTTCCATACGCGTGCATGATCGTGTTGTTATCATTTCCTGGTGTTAAAACTTCCATCTTCTCTGAGCTATTTTAATTTCAGGTGGACGGGAGCGTTTCCAAAGAGGAAGTATTTGCTCAAATTGATGGTGCATTAACTCAAC-TTCTTG</genome_strand>
        <mrna_strand>CACTTGAGATCTCTATTTAGCACGGAGCAGAAGCGCCATGGCTTCGTGCTGTTCATTGAGCTTCTCAACAGTCTCTTCAAAGCCTAACAAGCCTTACTCATCACCAATTTCTTCTTCTCTTGAGCTCCCCTTTACTTCCCAGTTGCCATTTTCTAAAAAATATTCACTTTATTCCAATCATACCCTTCTCCAAACTCAATGCCGGAAAACCCAATCACCGGATTGTCCCAGTTTCTTG...........................................................................................................................................................................................................................................................................................................................GTTGTGGGATCTGCGAAAAAGCAAGAACCTTTGAGGGTAATGATATCGGGAGCTCCTGCTTCTGGTAAAGGAACGCAATGCGAGCTCATTACCAAGAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACGATTTGGTGCATATTGCTGCTGGAGATTTATTGAGGGCTGAAATTGCTGCAGGCACTGAAAATGGGAGGAGAGCAAAGGAGTATATGGATAAAGGACAATTGGTACCAAACGAGATAGTTGTAACG....................................................................................................................ATGGTCAAAGAGCGGTTGATGTGTCCAGACTCTCAAGAAAAGGGTTGGCTTTTAGATGGATATCCTCGGAGCTTGTCTCAAGCAGTAGCTCTCAAAGAGTTCCAGCCAAACCTTTTCATTCTTCTGGAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCTGAAGAGATACTTGTTGAGAGAGTGGTTGGCCGTAGACTAGATCCTGTAACTGGGAGAATATACCATTTGAAGTATTCTCCGCCAGAGACCGATGAAATCGCTGCAAGGCTTACCCAGCGCTTTGATGATACAGAAGAAAAG......................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGCTGCGTCTGCACACTCACCGTCAAAATGTGGAATCAGTTCTCTCAATGTACAAAGATACTATATTCCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGACGGGAGCGTTTCCAAAGAGGAAGTATTTGCTCAAATTGATGGTGCATTAACTCAACTTTCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E328991" ref_strand="+" ref_description="SGN-E328991 [cTOC-24-G15]">
      <seq>actgagatctctatttagcacggagcagaagcgccatggcttcgtgctgttcattgagcttctcaacagtctcttcaaagcctaacaagccttactcatcaccaatttcttcttctcttgagctcccctttacttcccagttgccattttctaaaaaatattcactttattccaatcatacccttctccaaactcaatgccggaaaacccaatcaccggattgtcccagtttcttggttgtgggatctgcgaaaaagcaagaacctttgagggtaatgatatcgggagctcctgcttctggtaaaggaacgcaatgcgagctcattaccaagaagtacgatttggtgcatattgctgctggagatttattgagggctgaaattgctgcaggcactgaaaatgggaggagagcaaaggagtatatggataaaggacaattggtaccaaacgagatagttgtaacgatggtcaaagagcggttgatgtgtccagactctcaagaaaagggttggcttttagatggatatcctcggagcttgtctcaagcagtagctctcaaagagttccagccaaaccttttcattcttctggaaagtactgaagagatacttgttgagagagtggttggccgtagactagatcctgtaactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0132E21.2" temp_strand="+" temp_description="C06SLm0132E21.2  AC211087.2 htgs_phase:3 submitted_to_sgn_as:C06SLm0132E21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="41554" stop="44922"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41854" g_stop="42089" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="236" r_length="236" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42090" i_stop="42404" i_length="315">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42405" g_stop="42503" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="335" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42504" i_stop="43589" i_length="1086">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43590" g_stop="43718" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="464" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43719" i_stop="43834" i_length="116">
            <donor d_prob="0.475" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43835" g_stop="43963" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="465" r_stop="593" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="43964" i_stop="44564" i_length="601">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="44565" g_stop="44622" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="594" r_stop="651" r_length="58" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0132E21.2" gen_strand="+" ref_id="SGN-E328991" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>651</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0132E21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E328991" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41854" e_stop="42089"/>
          <exon e_start="42405" e_stop="42503"/>
          <exon e_start="43590" e_stop="43718"/>
          <exon e_start="43835" e_stop="43963"/>
          <exon e_start="44565" e_stop="44622"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGAGATCTCTATTTAGCACGGAGCAGAAGCGCCATGGCTTCGTGCTGTTCATTGAGCTTCTCAACAGTCTCTTCAAAGCCTAACAAGCCTTACTCATCACCAATTTCTTCTTCTCTTGAGCTCCCCTTTACTTCCCAGTTGCCATTTTCTAAAAAATATTCACTTTATTCCAATCATACCCTTCTCCAAACTCAATGCCGGAAAACCCAATCACCGGATTGTCCCAGTTTCTTGGTACGTCTTGCAATTCTTTTGACACCCTTTTGATTTTCACGTTCAATTTTGAGTTTAGAAAAGTGAGCCCAGAATTTGAAATTAGTAATAGGTTGTATTGAACATAAATGTATATTGAAGAGTTTTACTACGCAGCTGTTGGTTTACAATATATTTCATGCTCAATCGAATGAGATGACTTGAAAGAGTTAGACTTTAGTTTGGGACTGAGATGTAGTTGATTGATTGTTTTTTTGGTATGGCTTTGTGTAGTGGCTGAGTTTTAGCCAAAAAGGGAAACTTGATTAGTGATTGAATTGTATTTTTGTGATTTAGGTTGTGGGATCTGCGAAAAAGCAAGAACCTTTGAGGGTAATGATATCGGGAGCTCCTGCTTCTGGTAAAGGAACGCAATGCGAGCTCATTACCAAGAAGGTAATGGTTCTTTTTTTTTTCTTCATAGGGACAAGTTGGTTGTTATGATCTTTTATGTTTGAATTATCTTTATGCTGTTCTATGTAGGTTTCTCTTTTTGGAATGGATGATGATCCATTGGGATTTTGGTTTTATAATTCTGAATATGAAATCTCTATTCTTGAAAGTTTATCTACTAATATAAATCGTCCCAATTTCCACTAATATGTGTGTTATAGACCAGGTTGTACAATATAGAGGTATACTTCCATTCATGACTTCTGACCATGGGTGTTTCTAAATTTGAGGACCAGTTTTTTACCATATTACTGGTATCATTCTACCCAGGACCTCTTATGACTTGACCCTTACTCCATTTGGTTCGTAGACTGATAACACAAGAACTGGTATGTGGGGATTGTTATACACTGATTGACAATACCGGCATGGTTAATACCAGTATTAGCTATGCATGTTGTATATCTAGTATAAGTCACAGGGTGATACACCTCTTTTACCACAGCCTAAAAAAGCAGAATTATCAGATTTATCTGCACTCTTGTAAACTAAAATCATCATGTAAATTTGTCCAGTTATCAGATTTGTCTTGAAAAGCATCTTACTAGCATCTGTTCAGCTGTTCCATATATTTACGTTATTTCCTTAGCATAACATGTATGTCTCCTATGTGTATTCTCTTACAATTCACTGGTACCTTGTTCCCTAGCCTCTTTATCTTGTTTATTATGAATTCTCATCTGGTTCCTCTAAATTCTCATTGGTGGGTTTGTAATATTTCCTTCAGCCGAAATTGTCCATATTATAATCAACTTTATCTTAATTATTAGCAAGTCCCTGCTACTTGAACTCACATTCTTCACATTTCTTGATTGATTTAGCTTTAGTTTGATTTCCATGCTCCTTATTCCTTCCCTTGTTTAACATGTAGTTGTAAAAAGGTATGTTGCTAGTAGCATTTGATGTTCCATTTCAAAAAATGTCTCTAGTTGCAGTCGATGTTAGTTGCTACCTTAATTACCCATTTTCCTTGTTATGTATTACCCTGTGAGAAGTAATAAATTGAATACCGTGAGCTCATATATGCAGTACGATTTGGTGCATATTGCTGCTGGAGATTTATTGAGGGCTGAAATTGCTGCAGGCACTGAAAATGGGAGGAGAGCAAAGGAGTATATGGATAAAGGACAATTGGTACCAAACGAGATAGTTGTAACGGTAGGTTTACCTGGCAAACTGGTTCCTGCTTTTGTTAGCATGCTATTTTAAAGGTTGAAAGAGATCATTAGAAAGAGTGTTTTATTCATATGTGATTTGTTGATTCCTTGTTTTAGATGGTCAAAGAGCGGTTGATGTGTCCAGACTCTCAAGAAAAGGGTTGGCTTTTAGATGGATATCCTCGGAGCTTGTCTCAAGCAGTAGCTCTCAAAGAGTTCCAGCCAAACCTTTTCATTCTTCTGGAAGTGAGGTTCTGCTATTGATATCCTCTGATTGTGTTCTCAATCTCTTTCTAGTTAAAGCCTTAAGAGGATGAAAAGGATCAACATAGAGTATCCTGCATTTAAAATTTACCTGAAAAAATCTTTGAACGGGAAAACTGTGCTTTTGGTCTGTGAAAACCTAATTTTAGCCTTCAATTGAGAGAACTGTGCGCTTTTGGTTCCTCCTCTAGCATATTTCCCTACAAGAGTCAGATTACTTCCTTAAAATGCAAAAGAGTATCAAAATAACTTTCTTAGCATAAAAGGTGAATAGTTGTATGGTTTAATAGTTGTACTTTCATGGAATTTATCAGTTGAGGGACCAAAAGCTGATACTATCAGTTGGAGGTTTAGTGGGCTTGACTGAATACTGTGATTCGTTAGTACCAAGATTACAACTTACAAATAACCAAAAAAAAATTATTTTTTTCCTTATTTTAAATATGATTAGTTTTTTCTGATTCTTTTTTGTTTCACATGTCGTATATTAAACTGCAAGAGGTTTCAGAATAAATGCACCTTCATCGAGTCATCAACCAATGTTTTAACTTTTAACAGGAACACGTTATATTGTAAATGATAGGTACCTGAAGAGATACTTGTTGAGAGAGTGGTTGGCCGTAGACTAGATCCTGTAACTG</genome_strand>
        <mrna_strand>ACTGAGATCTCTATTTAGCACGGAGCAGAAGCGCCATGGCTTCGTGCTGTTCATTGAGCTTCTCAACAGTCTCTTCAAAGCCTAACAAGCCTTACTCATCACCAATTTCTTCTTCTCTTGAGCTCCCCTTTACTTCCCAGTTGCCATTTTCTAAAAAATATTCACTTTATTCCAATCATACCCTTCTCCAAACTCAATGCCGGAAAACCCAATCACCGGATTGTCCCAGTTTCTTG...........................................................................................................................................................................................................................................................................................................................GTTGTGGGATCTGCGAAAAAGCAAGAACCTTTGAGGGTAATGATATCGGGAGCTCCTGCTTCTGGTAAAGGAACGCAATGCGAGCTCATTACCAAGAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACGATTTGGTGCATATTGCTGCTGGAGATTTATTGAGGGCTGAAATTGCTGCAGGCACTGAAAATGGGAGGAGAGCAAAGGAGTATATGGATAAAGGACAATTGGTACCAAACGAGATAGTTGTAACG....................................................................................................................ATGGTCAAAGAGCGGTTGATGTGTCCAGACTCTCAAGAAAAGGGTTGGCTTTTAGATGGATATCCTCGGAGCTTGTCTCAAGCAGTAGCTCTCAAAGAGTTCCAGCCAAACCTTTTCATTCTTCTGGAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTACTGAAGAGATACTTGTTGAGAGAGTGGTTGGCCGTAGACTAGATCCTGTAACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E704951" ref_strand="+" ref_description="SGN-E704951 [FA25DA01]">
      <seq>ccctttatttagcacggagcagaagcgccatggcttcgtgctgctcattgagcttctcaacagtctcttcaaagcctaacaagccttactcatcaccaatttcttcttctcttgagctcccctttacttcccagttgccattttctaaaaaatattcactttattccaatcatacccttctccaaactcaatgccggaaaacccaatcaccggattgtcccagtttcttggttgtgggatctgcgaaaaagcaagaacctttgagggtaatgatatcgggagctcctgcttctggtaaaggaacgcaatgcgagctcattaccaagaagtacgatttggtgcatattgctgctggagatttattgagggctgaaattgctgcaggcactgaaaatgggaggagagcaaaggagtatatggataaaggacaattggtaccaaacgagatagttgtaacgatggtcaaagagcggttgatgtgtccagactctcaagaaaagggttggcttttagatggatatcctcggagcttgtctcaagcagtagctctcaaagagttccagccaaaccttttcattcttctggaagtacctgaagagatacttgttgagagagtggttggccgtagactagatcctgtaactgggagaatataccatttgaagtattctccgccagagaccgatgaaatcgctgcaaggcttacccagcgctttgatgatacagaagaaaaggtgaagctgcgtctgcacactcaccgtcaaaatggggaatcagttctctcaatgtacaaagatactatattccagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0132E21.2" temp_strand="+" temp_description="C06SLm0132E21.2  AC211087.2 htgs_phase:3 submitted_to_sgn_as:C06SLm0132E21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="41562" stop="45477"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41860" g_stop="42089" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="230" r_length="230" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42090" i_stop="42404" i_length="315">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42405" g_stop="42503" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="329" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42504" i_stop="43589" i_length="1086">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43590" g_stop="43718" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="458" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43719" i_stop="43834" i_length="116">
            <donor d_prob="0.475" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43835" g_stop="43963" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="459" r_stop="587" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="43964" i_stop="44564" i_length="601">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="44565" g_stop="44711" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="588" r_stop="734" r_length="147" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="44712" i_stop="45101" i_length="390">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="45102" g_stop="45177" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="735" r_stop="810" r_length="76" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0132E21.2" gen_strand="+" ref_id="SGN-E704951" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>810</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0132E21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E704951" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41860" e_stop="42089"/>
          <exon e_start="42405" e_stop="42503"/>
          <exon e_start="43590" e_stop="43718"/>
          <exon e_start="43835" e_stop="43963"/>
          <exon e_start="44565" e_stop="44711"/>
          <exon e_start="45102" e_stop="45177"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTCTATTTAGCACGGAGCAGAAGCGCCATGGCTTCGTGCTGTTCATTGAGCTTCTCAACAGTCTCTTCAAAGCCTAACAAGCCTTACTCATCACCAATTTCTTCTTCTCTTGAGCTCCCCTTTACTTCCCAGTTGCCATTTTCTAAAAAATATTCACTTTATTCCAATCATACCCTTCTCCAAACTCAATGCCGGAAAACCCAATCACCGGATTGTCCCAGTTTCTTGGTACGTCTTGCAATTCTTTTGACACCCTTTTGATTTTCACGTTCAATTTTGAGTTTAGAAAAGTGAGCCCAGAATTTGAAATTAGTAATAGGTTGTATTGAACATAAATGTATATTGAAGAGTTTTACTACGCAGCTGTTGGTTTACAATATATTTCATGCTCAATCGAATGAGATGACTTGAAAGAGTTAGACTTTAGTTTGGGACTGAGATGTAGTTGATTGATTGTTTTTTTGGTATGGCTTTGTGTAGTGGCTGAGTTTTAGCCAAAAAGGGAAACTTGATTAGTGATTGAATTGTATTTTTGTGATTTAGGTTGTGGGATCTGCGAAAAAGCAAGAACCTTTGAGGGTAATGATATCGGGAGCTCCTGCTTCTGGTAAAGGAACGCAATGCGAGCTCATTACCAAGAAGGTAATGGTTCTTTTTTTTTTCTTCATAGGGACAAGTTGGTTGTTATGATCTTTTATGTTTGAATTATCTTTATGCTGTTCTATGTAGGTTTCTCTTTTTGGAATGGATGATGATCCATTGGGATTTTGGTTTTATAATTCTGAATATGAAATCTCTATTCTTGAAAGTTTATCTACTAATATAAATCGTCCCAATTTCCACTAATATGTGTGTTATAGACCAGGTTGTACAATATAGAGGTATACTTCCATTCATGACTTCTGACCATGGGTGTTTCTAAATTTGAGGACCAGTTTTTTACCATATTACTGGTATCATTCTACCCAGGACCTCTTATGACTTGACCCTTACTCCATTTGGTTCGTAGACTGATAACACAAGAACTGGTATGTGGGGATTGTTATACACTGATTGACAATACCGGCATGGTTAATACCAGTATTAGCTATGCATGTTGTATATCTAGTATAAGTCACAGGGTGATACACCTCTTTTACCACAGCCTAAAAAAGCAGAATTATCAGATTTATCTGCACTCTTGTAAACTAAAATCATCATGTAAATTTGTCCAGTTATCAGATTTGTCTTGAAAAGCATCTTACTAGCATCTGTTCAGCTGTTCCATATATTTACGTTATTTCCTTAGCATAACATGTATGTCTCCTATGTGTATTCTCTTACAATTCACTGGTACCTTGTTCCCTAGCCTCTTTATCTTGTTTATTATGAATTCTCATCTGGTTCCTCTAAATTCTCATTGGTGGGTTTGTAATATTTCCTTCAGCCGAAATTGTCCATATTATAATCAACTTTATCTTAATTATTAGCAAGTCCCTGCTACTTGAACTCACATTCTTCACATTTCTTGATTGATTTAGCTTTAGTTTGATTTCCATGCTCCTTATTCCTTCCCTTGTTTAACATGTAGTTGTAAAAAGGTATGTTGCTAGTAGCATTTGATGTTCCATTTCAAAAAATGTCTCTAGTTGCAGTCGATGTTAGTTGCTACCTTAATTACCCATTTTCCTTGTTATGTATTACCCTGTGAGAAGTAATAAATTGAATACCGTGAGCTCATATATGCAGTACGATTTGGTGCATATTGCTGCTGGAGATTTATTGAGGGCTGAAATTGCTGCAGGCACTGAAAATGGGAGGAGAGCAAAGGAGTATATGGATAAAGGACAATTGGTACCAAACGAGATAGTTGTAACGGTAGGTTTACCTGGCAAACTGGTTCCTGCTTTTGTTAGCATGCTATTTTAAAGGTTGAAAGAGATCATTAGAAAGAGTGTTTTATTCATATGTGATTTGTTGATTCCTTGTTTTAGATGGTCAAAGAGCGGTTGATGTGTCCAGACTCTCAAGAAAAGGGTTGGCTTTTAGATGGATATCCTCGGAGCTTGTCTCAAGCAGTAGCTCTCAAAGAGTTCCAGCCAAACCTTTTCATTCTTCTGGAAGTGAGGTTCTGCTATTGATATCCTCTGATTGTGTTCTCAATCTCTTTCTAGTTAAAGCCTTAAGAGGATGAAAAGGATCAACATAGAGTATCCTGCATTTAAAATTTACCTGAAAAAATCTTTGAACGGGAAAACTGTGCTTTTGGTCTGTGAAAACCTAATTTTAGCCTTCAATTGAGAGAACTGTGCGCTTTTGGTTCCTCCTCTAGCATATTTCCCTACAAGAGTCAGATTACTTCCTTAAAATGCAAAAGAGTATCAAAATAACTTTCTTAGCATAAAAGGTGAATAGTTGTATGGTTTAATAGTTGTACTTTCATGGAATTTATCAGTTGAGGGACCAAAAGCTGATACTATCAGTTGGAGGTTTAGTGGGCTTGACTGAATACTGTGATTCGTTAGTACCAAGATTACAACTTACAAATAACCAAAAAAAAATTATTTTTTTCCTTATTTTAAATATGATTAGTTTTTTCTGATTCTTTTTTGTTTCACATGTCGTATATTAAACTGCAAGAGGTTTCAGAATAAATGCACCTTCATCGAGTCATCAACCAATGTTTTAACTTTTAACAGGAACACGTTATATTGTAAATGATAGGTACCTGAAGAGATACTTGTTGAGAGAGTGGTTGGCCGTAGACTAGATCCTGTAACTGGGAGAATATACCATTTGAAGTATTCTCCGCCAGAGACCGATGAAATCGCTGCAAGGCTTACCCAGCGCTTTGATGATACAGAAGAAAAGGCATGTTAATGCATGAATACGTACATTATTGTTGCTACAACTGCTGTAGGGCTTTTCCTTTTGTATGAAGCTTTTAAATCACGTAAACTTTTTTAATTCTTATTTGGTGGAAGCCTACCGTTTGTCCCATTGGTCATTTCTTGACCTTCTAATCAAACCATTTTAATCTATTCTCCTCCTGGAAATTTTGTTGCAGGTCTCGAAATTTCCATTTTCAACTAAATCTTTCTTTTAGCTATTTCCTTTATCATTCTTGCTGTCCTTTTCCCTTGCTTACTCAAGTCGCTTTGTAGATAACTGACTTAAGTATAGGTTTCTATAACATTATAAATAATGTTGTGTGATCAGCTTCATTTTTGTCTAATTTCTTTTTCAATTTACCGTTTACAGGTGAAGCTGCGTCTGCACACTCACCGTCAAAATGTGGAATCAGTTCTCTCAATGTACAAAGATACTATATTCCAGG</genome_strand>
        <mrna_strand>CCCTTTATTTAGCACGGAGCAGAAGCGCCATGGCTTCGTGCTGCTCATTGAGCTTCTCAACAGTCTCTTCAAAGCCTAACAAGCCTTACTCATCACCAATTTCTTCTTCTCTTGAGCTCCCCTTTACTTCCCAGTTGCCATTTTCTAAAAAATATTCACTTTATTCCAATCATACCCTTCTCCAAACTCAATGCCGGAAAACCCAATCACCGGATTGTCCCAGTTTCTTG...........................................................................................................................................................................................................................................................................................................................GTTGTGGGATCTGCGAAAAAGCAAGAACCTTTGAGGGTAATGATATCGGGAGCTCCTGCTTCTGGTAAAGGAACGCAATGCGAGCTCATTACCAAGAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACGATTTGGTGCATATTGCTGCTGGAGATTTATTGAGGGCTGAAATTGCTGCAGGCACTGAAAATGGGAGGAGAGCAAAGGAGTATATGGATAAAGGACAATTGGTACCAAACGAGATAGTTGTAACG....................................................................................................................ATGGTCAAAGAGCGGTTGATGTGTCCAGACTCTCAAGAAAAGGGTTGGCTTTTAGATGGATATCCTCGGAGCTTGTCTCAAGCAGTAGCTCTCAAAGAGTTCCAGCCAAACCTTTTCATTCTTCTGGAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCTGAAGAGATACTTGTTGAGAGAGTGGTTGGCCGTAGACTAGATCCTGTAACTGGGAGAATATACCATTTGAAGTATTCTCCGCCAGAGACCGATGAAATCGCTGCAAGGCTTACCCAGCGCTTTGATGATACAGAAGAAAAG......................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGCTGCGTCTGCACACTCACCGTCAAAATGGGGAATCAGTTCTCTCAATGTACAAAGATACTATATTCCAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E704965" ref_strand="+" ref_description="SGN-E704965 [FA25DB04]">
      <seq>ctctatttagcacggagcagaagcgccatggcttcgtgctgttcattgagcttctcaacagtctcttcaaagcctaacaagccttactcatcaccaatttcttcttctcttgagctcccctttacttcccagttgccattttctaaaaaatattcactttattccaatcatacccttctccaaactcaatgccggaaaacccaatcaccggattgtcccagtttcttggttgtgggatctgcgaaaaagcaagaacctttgagggtaatgatatcgggagctcctgcttctggtaaaggaacgcaatgcgagctcattaccaagaagtacgatttggtgcatattgctgctggagatttattgagggctgaaattgctgcaggcactgaaaatgggaggagagcaaaggagtatatggataaaggacaattggtaccaaacgagatagttgtaacgatggtcaaagagcggttgatgtgtccagactctcaagaaaagggttggcttttagatggatatcctcggagcttgtctcaagcagtagctctcaaagagttccagccaaaccttttcattcttctggaagtacctgaagagatacttgttgagagagtggttggccgtagactagatcctgtaactgggagaatataccatttgaagtattctccgccagagaccgatgaaatcgctgcaaggcttacccagcgctttgatgatacagaagaaaaggtgaagctgcgtctgcacactcaccgtcaaaatgtggaatcagttctctcaatgtacaaagatactatattccaggtggacgggagcgtttccaaagaggaagtatttgctcaaattgatggtgcattaactcaacttcttgaagcaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0132E21.2" temp_strand="+" temp_description="C06SLm0132E21.2  AC211087.2 htgs_phase:3 submitted_to_sgn_as:C06SLm0132E21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="41562" stop="46162"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41862" g_stop="42089" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="228" r_length="228" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42090" i_stop="42404" i_length="315">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42405" g_stop="42503" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="327" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42504" i_stop="43589" i_length="1086">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43590" g_stop="43718" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="456" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43719" i_stop="43834" i_length="116">
            <donor d_prob="0.475" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43835" g_stop="43963" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="457" r_stop="585" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="43964" i_stop="44564" i_length="601">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="44565" g_stop="44711" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="586" r_stop="732" r_length="147" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="44712" i_stop="45101" i_length="390">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="45102" g_stop="45176" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="733" r_stop="807" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="45177" i_stop="45788" i_length="612">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="45789" g_stop="45862" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="808" r_stop="881" r_length="74" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0132E21.2" gen_strand="+" ref_id="SGN-E704965" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>881</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0132E21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E704965" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41862" e_stop="42089"/>
          <exon e_start="42405" e_stop="42503"/>
          <exon e_start="43590" e_stop="43718"/>
          <exon e_start="43835" e_stop="43963"/>
          <exon e_start="44565" e_stop="44711"/>
          <exon e_start="45102" e_stop="45176"/>
          <exon e_start="45789" e_stop="45862"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTATTTAGCACGGAGCAGAAGCGCCATGGCTTCGTGCTGTTCATTGAGCTTCTCAACAGTCTCTTCAAAGCCTAACAAGCCTTACTCATCACCAATTTCTTCTTCTCTTGAGCTCCCCTTTACTTCCCAGTTGCCATTTTCTAAAAAATATTCACTTTATTCCAATCATACCCTTCTCCAAACTCAATGCCGGAAAACCCAATCACCGGATTGTCCCAGTTTCTTGGTACGTCTTGCAATTCTTTTGACACCCTTTTGATTTTCACGTTCAATTTTGAGTTTAGAAAAGTGAGCCCAGAATTTGAAATTAGTAATAGGTTGTATTGAACATAAATGTATATTGAAGAGTTTTACTACGCAGCTGTTGGTTTACAATATATTTCATGCTCAATCGAATGAGATGACTTGAAAGAGTTAGACTTTAGTTTGGGACTGAGATGTAGTTGATTGATTGTTTTTTTGGTATGGCTTTGTGTAGTGGCTGAGTTTTAGCCAAAAAGGGAAACTTGATTAGTGATTGAATTGTATTTTTGTGATTTAGGTTGTGGGATCTGCGAAAAAGCAAGAACCTTTGAGGGTAATGATATCGGGAGCTCCTGCTTCTGGTAAAGGAACGCAATGCGAGCTCATTACCAAGAAGGTAATGGTTCTTTTTTTTTTCTTCATAGGGACAAGTTGGTTGTTATGATCTTTTATGTTTGAATTATCTTTATGCTGTTCTATGTAGGTTTCTCTTTTTGGAATGGATGATGATCCATTGGGATTTTGGTTTTATAATTCTGAATATGAAATCTCTATTCTTGAAAGTTTATCTACTAATATAAATCGTCCCAATTTCCACTAATATGTGTGTTATAGACCAGGTTGTACAATATAGAGGTATACTTCCATTCATGACTTCTGACCATGGGTGTTTCTAAATTTGAGGACCAGTTTTTTACCATATTACTGGTATCATTCTACCCAGGACCTCTTATGACTTGACCCTTACTCCATTTGGTTCGTAGACTGATAACACAAGAACTGGTATGTGGGGATTGTTATACACTGATTGACAATACCGGCATGGTTAATACCAGTATTAGCTATGCATGTTGTATATCTAGTATAAGTCACAGGGTGATACACCTCTTTTACCACAGCCTAAAAAAGCAGAATTATCAGATTTATCTGCACTCTTGTAAACTAAAATCATCATGTAAATTTGTCCAGTTATCAGATTTGTCTTGAAAAGCATCTTACTAGCATCTGTTCAGCTGTTCCATATATTTACGTTATTTCCTTAGCATAACATGTATGTCTCCTATGTGTATTCTCTTACAATTCACTGGTACCTTGTTCCCTAGCCTCTTTATCTTGTTTATTATGAATTCTCATCTGGTTCCTCTAAATTCTCATTGGTGGGTTTGTAATATTTCCTTCAGCCGAAATTGTCCATATTATAATCAACTTTATCTTAATTATTAGCAAGTCCCTGCTACTTGAACTCACATTCTTCACATTTCTTGATTGATTTAGCTTTAGTTTGATTTCCATGCTCCTTATTCCTTCCCTTGTTTAACATGTAGTTGTAAAAAGGTATGTTGCTAGTAGCATTTGATGTTCCATTTCAAAAAATGTCTCTAGTTGCAGTCGATGTTAGTTGCTACCTTAATTACCCATTTTCCTTGTTATGTATTACCCTGTGAGAAGTAATAAATTGAATACCGTGAGCTCATATATGCAGTACGATTTGGTGCATATTGCTGCTGGAGATTTATTGAGGGCTGAAATTGCTGCAGGCACTGAAAATGGGAGGAGAGCAAAGGAGTATATGGATAAAGGACAATTGGTACCAAACGAGATAGTTGTAACGGTAGGTTTACCTGGCAAACTGGTTCCTGCTTTTGTTAGCATGCTATTTTAAAGGTTGAAAGAGATCATTAGAAAGAGTGTTTTATTCATATGTGATTTGTTGATTCCTTGTTTTAGATGGTCAAAGAGCGGTTGATGTGTCCAGACTCTCAAGAAAAGGGTTGGCTTTTAGATGGATATCCTCGGAGCTTGTCTCAAGCAGTAGCTCTCAAAGAGTTCCAGCCAAACCTTTTCATTCTTCTGGAAGTGAGGTTCTGCTATTGATATCCTCTGATTGTGTTCTCAATCTCTTTCTAGTTAAAGCCTTAAGAGGATGAAAAGGATCAACATAGAGTATCCTGCATTTAAAATTTACCTGAAAAAATCTTTGAACGGGAAAACTGTGCTTTTGGTCTGTGAAAACCTAATTTTAGCCTTCAATTGAGAGAACTGTGCGCTTTTGGTTCCTCCTCTAGCATATTTCCCTACAAGAGTCAGATTACTTCCTTAAAATGCAAAAGAGTATCAAAATAACTTTCTTAGCATAAAAGGTGAATAGTTGTATGGTTTAATAGTTGTACTTTCATGGAATTTATCAGTTGAGGGACCAAAAGCTGATACTATCAGTTGGAGGTTTAGTGGGCTTGACTGAATACTGTGATTCGTTAGTACCAAGATTACAACTTACAAATAACCAAAAAAAAATTATTTTTTTCCTTATTTTAAATATGATTAGTTTTTTCTGATTCTTTTTTGTTTCACATGTCGTATATTAAACTGCAAGAGGTTTCAGAATAAATGCACCTTCATCGAGTCATCAACCAATGTTTTAACTTTTAACAGGAACACGTTATATTGTAAATGATAGGTACCTGAAGAGATACTTGTTGAGAGAGTGGTTGGCCGTAGACTAGATCCTGTAACTGGGAGAATATACCATTTGAAGTATTCTCCGCCAGAGACCGATGAAATCGCTGCAAGGCTTACCCAGCGCTTTGATGATACAGAAGAAAAGGCATGTTAATGCATGAATACGTACATTATTGTTGCTACAACTGCTGTAGGGCTTTTCCTTTTGTATGAAGCTTTTAAATCACGTAAACTTTTTTAATTCTTATTTGGTGGAAGCCTACCGTTTGTCCCATTGGTCATTTCTTGACCTTCTAATCAAACCATTTTAATCTATTCTCCTCCTGGAAATTTTGTTGCAGGTCTCGAAATTTCCATTTTCAACTAAATCTTTCTTTTAGCTATTTCCTTTATCATTCTTGCTGTCCTTTTCCCTTGCTTACTCAAGTCGCTTTGTAGATAACTGACTTAAGTATAGGTTTCTATAACATTATAAATAATGTTGTGTGATCAGCTTCATTTTTGTCTAATTTCTTTTTCAATTTACCGTTTACAGGTGAAGCTGCGTCTGCACACTCACCGTCAAAATGTGGAATCAGTTCTCTCAATGTACAAAGATACTATATTCCAGGTATTCTTTTTGCCACAGATGTGGTGCAGTTGCTTCACTCGGGAATGCAGATTGAAACACTCATCAGTCACCATCAAAGTGTGGAATCATTCCTTATATACTTGATTCATAGTTTATTGGGTTGTTTGATGGTTTACAAGGTCTTGGTTAACAGGAATATAGTCCATAAAAGACAATGTGGAAGGGACTCGGTGGAAATGGTTCGATGAGAAAGTAGTTTGGTTTTCTATTTGGCAAAAGAACAATGATATGGTTATAAAATTTCGTTGTTTGACATGTAGGTTACAAAATGATTACTTTAAATTATCTTCAGTTCATCCAGGTCATCCTTCCTCATAACAGTTGTAAAACAAAGGAAAGCCAAAGCAAAAGGGCTATACATCCTCTTTTATCTTAAAATTTACTCAATAAGCTAAAGGAAGAGTAAATCCTTTTGAGTATTACATTCATACTAATCAATCTGGGGGGAAATATACTTAATCAAGGACTCCCCTTCCCTCTTCAATGAACAAGGATACTGTATGTTCTTTCTTTCCATACGCGTGCATGATCGTGTTGTTATCATTTCCTGGTGTTAAAACTTCCATCTTCTCTGAGCTATTTTAATTTCAGGTGGACGGGAGCGTTTCCAAAGAGGAAGTATTTGCTCAAATTGATGGTGCATTAACTCAACTTCTTGAAGCAAA</genome_strand>
        <mrna_strand>CTCTATTTAGCACGGAGCAGAAGCGCCATGGCTTCGTGCTGTTCATTGAGCTTCTCAACAGTCTCTTCAAAGCCTAACAAGCCTTACTCATCACCAATTTCTTCTTCTCTTGAGCTCCCCTTTACTTCCCAGTTGCCATTTTCTAAAAAATATTCACTTTATTCCAATCATACCCTTCTCCAAACTCAATGCCGGAAAACCCAATCACCGGATTGTCCCAGTTTCTTG...........................................................................................................................................................................................................................................................................................................................GTTGTGGGATCTGCGAAAAAGCAAGAACCTTTGAGGGTAATGATATCGGGAGCTCCTGCTTCTGGTAAAGGAACGCAATGCGAGCTCATTACCAAGAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACGATTTGGTGCATATTGCTGCTGGAGATTTATTGAGGGCTGAAATTGCTGCAGGCACTGAAAATGGGAGGAGAGCAAAGGAGTATATGGATAAAGGACAATTGGTACCAAACGAGATAGTTGTAACG....................................................................................................................ATGGTCAAAGAGCGGTTGATGTGTCCAGACTCTCAAGAAAAGGGTTGGCTTTTAGATGGATATCCTCGGAGCTTGTCTCAAGCAGTAGCTCTCAAAGAGTTCCAGCCAAACCTTTTCATTCTTCTGGAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCTGAAGAGATACTTGTTGAGAGAGTGGTTGGCCGTAGACTAGATCCTGTAACTGGGAGAATATACCATTTGAAGTATTCTCCGCCAGAGACCGATGAAATCGCTGCAAGGCTTACCCAGCGCTTTGATGATACAGAAGAAAAG......................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGCTGCGTCTGCACACTCACCGTCAAAATGTGGAATCAGTTCTCTCAATGTACAAAGATACTATATTCCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGACGGGAGCGTTTCCAAAGAGGAAGTATTTGCTCAAATTGATGGTGCATTAACTCAACTTCTTGAAGCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E328867" ref_strand="+" ref_description="SGN-E328867 [cTOC-24-C18]">
      <seq>tctatttagcacggagcagaagcgccatggcttcgtgctgttcattgagcttctcaacagtctcttcaaagcctaacaagccttactcatcaccaatttcttcttctcttgagctcccctttacttcccagttgccattttctaaaaaatattcactttattccaatcatacccttctccaaactcaatgccggaaaacccaatcaccggattgtcccagtttcttggttgtgggatctgcgaaaaagcaagaacctttgagggtaatgatatcgggagctcctgcttctggtaaaggaacgcaatgcgagctcattaccaagaagtacgatttggtgcatattgctgctggagatttattgagggctgaaattgctgcaggcactgaaaatgggaggagagcaaaggagtatatggataaaggacaattggtaccaaacgagatagttgtaacgatggtcaaagagcggttgatgtgtccagactctcaagaaaagggttggcttttagatggatatcctcggagcttgtctcaagcagtagctctcaaagagttccagccaaaccttttcattcttctggaagtacctgaagagatacttgttgagagagtggttggccgtagactagatcctgtaactgggagaatataccatttgaagtattctccgccagagaccgatgaaatcgctgcaaggcttacccagcgctttgatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0132E21.2" temp_strand="+" temp_description="C06SLm0132E21.2  AC211087.2 htgs_phase:3 submitted_to_sgn_as:C06SLm0132E21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="41563" stop="44998"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41863" g_stop="42089" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="227" r_length="227" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42090" i_stop="42404" i_length="315">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42405" g_stop="42503" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="326" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42504" i_stop="43589" i_length="1086">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43590" g_stop="43718" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="455" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43719" i_stop="43834" i_length="116">
            <donor d_prob="0.475" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43835" g_stop="43963" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="584" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="43964" i_stop="44564" i_length="601">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="44565" g_stop="44698" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="585" r_stop="718" r_length="134" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0132E21.2" gen_strand="+" ref_id="SGN-E328867" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>718</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0132E21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E328867" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41863" e_stop="42089"/>
          <exon e_start="42405" e_stop="42503"/>
          <exon e_start="43590" e_stop="43718"/>
          <exon e_start="43835" e_stop="43963"/>
          <exon e_start="44565" e_stop="44698"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTATTTAGCACGGAGCAGAAGCGCCATGGCTTCGTGCTGTTCATTGAGCTTCTCAACAGTCTCTTCAAAGCCTAACAAGCCTTACTCATCACCAATTTCTTCTTCTCTTGAGCTCCCCTTTACTTCCCAGTTGCCATTTTCTAAAAAATATTCACTTTATTCCAATCATACCCTTCTCCAAACTCAATGCCGGAAAACCCAATCACCGGATTGTCCCAGTTTCTTGGTACGTCTTGCAATTCTTTTGACACCCTTTTGATTTTCACGTTCAATTTTGAGTTTAGAAAAGTGAGCCCAGAATTTGAAATTAGTAATAGGTTGTATTGAACATAAATGTATATTGAAGAGTTTTACTACGCAGCTGTTGGTTTACAATATATTTCATGCTCAATCGAATGAGATGACTTGAAAGAGTTAGACTTTAGTTTGGGACTGAGATGTAGTTGATTGATTGTTTTTTTGGTATGGCTTTGTGTAGTGGCTGAGTTTTAGCCAAAAAGGGAAACTTGATTAGTGATTGAATTGTATTTTTGTGATTTAGGTTGTGGGATCTGCGAAAAAGCAAGAACCTTTGAGGGTAATGATATCGGGAGCTCCTGCTTCTGGTAAAGGAACGCAATGCGAGCTCATTACCAAGAAGGTAATGGTTCTTTTTTTTTTCTTCATAGGGACAAGTTGGTTGTTATGATCTTTTATGTTTGAATTATCTTTATGCTGTTCTATGTAGGTTTCTCTTTTTGGAATGGATGATGATCCATTGGGATTTTGGTTTTATAATTCTGAATATGAAATCTCTATTCTTGAAAGTTTATCTACTAATATAAATCGTCCCAATTTCCACTAATATGTGTGTTATAGACCAGGTTGTACAATATAGAGGTATACTTCCATTCATGACTTCTGACCATGGGTGTTTCTAAATTTGAGGACCAGTTTTTTACCATATTACTGGTATCATTCTACCCAGGACCTCTTATGACTTGACCCTTACTCCATTTGGTTCGTAGACTGATAACACAAGAACTGGTATGTGGGGATTGTTATACACTGATTGACAATACCGGCATGGTTAATACCAGTATTAGCTATGCATGTTGTATATCTAGTATAAGTCACAGGGTGATACACCTCTTTTACCACAGCCTAAAAAAGCAGAATTATCAGATTTATCTGCACTCTTGTAAACTAAAATCATCATGTAAATTTGTCCAGTTATCAGATTTGTCTTGAAAAGCATCTTACTAGCATCTGTTCAGCTGTTCCATATATTTACGTTATTTCCTTAGCATAACATGTATGTCTCCTATGTGTATTCTCTTACAATTCACTGGTACCTTGTTCCCTAGCCTCTTTATCTTGTTTATTATGAATTCTCATCTGGTTCCTCTAAATTCTCATTGGTGGGTTTGTAATATTTCCTTCAGCCGAAATTGTCCATATTATAATCAACTTTATCTTAATTATTAGCAAGTCCCTGCTACTTGAACTCACATTCTTCACATTTCTTGATTGATTTAGCTTTAGTTTGATTTCCATGCTCCTTATTCCTTCCCTTGTTTAACATGTAGTTGTAAAAAGGTATGTTGCTAGTAGCATTTGATGTTCCATTTCAAAAAATGTCTCTAGTTGCAGTCGATGTTAGTTGCTACCTTAATTACCCATTTTCCTTGTTATGTATTACCCTGTGAGAAGTAATAAATTGAATACCGTGAGCTCATATATGCAGTACGATTTGGTGCATATTGCTGCTGGAGATTTATTGAGGGCTGAAATTGCTGCAGGCACTGAAAATGGGAGGAGAGCAAAGGAGTATATGGATAAAGGACAATTGGTACCAAACGAGATAGTTGTAACGGTAGGTTTACCTGGCAAACTGGTTCCTGCTTTTGTTAGCATGCTATTTTAAAGGTTGAAAGAGATCATTAGAAAGAGTGTTTTATTCATATGTGATTTGTTGATTCCTTGTTTTAGATGGTCAAAGAGCGGTTGATGTGTCCAGACTCTCAAGAAAAGGGTTGGCTTTTAGATGGATATCCTCGGAGCTTGTCTCAAGCAGTAGCTCTCAAAGAGTTCCAGCCAAACCTTTTCATTCTTCTGGAAGTGAGGTTCTGCTATTGATATCCTCTGATTGTGTTCTCAATCTCTTTCTAGTTAAAGCCTTAAGAGGATGAAAAGGATCAACATAGAGTATCCTGCATTTAAAATTTACCTGAAAAAATCTTTGAACGGGAAAACTGTGCTTTTGGTCTGTGAAAACCTAATTTTAGCCTTCAATTGAGAGAACTGTGCGCTTTTGGTTCCTCCTCTAGCATATTTCCCTACAAGAGTCAGATTACTTCCTTAAAATGCAAAAGAGTATCAAAATAACTTTCTTAGCATAAAAGGTGAATAGTTGTATGGTTTAATAGTTGTACTTTCATGGAATTTATCAGTTGAGGGACCAAAAGCTGATACTATCAGTTGGAGGTTTAGTGGGCTTGACTGAATACTGTGATTCGTTAGTACCAAGATTACAACTTACAAATAACCAAAAAAAAATTATTTTTTTCCTTATTTTAAATATGATTAGTTTTTTCTGATTCTTTTTTGTTTCACATGTCGTATATTAAACTGCAAGAGGTTTCAGAATAAATGCACCTTCATCGAGTCATCAACCAATGTTTTAACTTTTAACAGGAACACGTTATATTGTAAATGATAGGTACCTGAAGAGATACTTGTTGAGAGAGTGGTTGGCCGTAGACTAGATCCTGTAACTGGGAGAATATACCATTTGAAGTATTCTCCGCCAGAGACCGATGAAATCGCTGCAAGGCTTACCCAGCGCTTTGATGA</genome_strand>
        <mrna_strand>TCTATTTAGCACGGAGCAGAAGCGCCATGGCTTCGTGCTGTTCATTGAGCTTCTCAACAGTCTCTTCAAAGCCTAACAAGCCTTACTCATCACCAATTTCTTCTTCTCTTGAGCTCCCCTTTACTTCCCAGTTGCCATTTTCTAAAAAATATTCACTTTATTCCAATCATACCCTTCTCCAAACTCAATGCCGGAAAACCCAATCACCGGATTGTCCCAGTTTCTTG...........................................................................................................................................................................................................................................................................................................................GTTGTGGGATCTGCGAAAAAGCAAGAACCTTTGAGGGTAATGATATCGGGAGCTCCTGCTTCTGGTAAAGGAACGCAATGCGAGCTCATTACCAAGAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACGATTTGGTGCATATTGCTGCTGGAGATTTATTGAGGGCTGAAATTGCTGCAGGCACTGAAAATGGGAGGAGAGCAAAGGAGTATATGGATAAAGGACAATTGGTACCAAACGAGATAGTTGTAACG....................................................................................................................ATGGTCAAAGAGCGGTTGATGTGTCCAGACTCTCAAGAAAAGGGTTGGCTTTTAGATGGATATCCTCGGAGCTTGTCTCAAGCAGTAGCTCTCAAAGAGTTCCAGCCAAACCTTTTCATTCTTCTGGAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCTGAAGAGATACTTGTTGAGAGAGTGGTTGGCCGTAGACTAGATCCTGTAACTGGGAGAATATACCATTTGAAGTATTCTCCGCCAGAGACCGATGAAATCGCTGCAAGGCTTACCCAGCGCTTTGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E345487" ref_strand="+" ref_description="SGN-E345487 [cTOF-13-P14]">
      <seq>tctatttagcacggagcagaagcgccatggcttcgtgctgttcattgagcttctcaacagtctcttcaaagcctaacaagccttactcatcaccaatttcttcttctcttgagctcccctttacttcccagttgccattttctaaaaaatattcactttattccaatcatacccttctccaaactcaatgccggaaaacccaatcaccggattgtcccagtttcttggttgtgggatctgcgaaaaagcaagaacctttgagggtaatgatatcgggagctcctgcttctggtaaaggaacgcaatgcgagctcattaccaagaagtacgatttggtgcatattgctgctggagatttattgagggctgaaattgctgcaggcactgaaaatgggaggagagcaaaggagtatatggataaaggacaattggtaccaaacgagatagttgtaacgatggtcaaagagcggttgatgtgtccagactctcaagaaaagggttggcttttagatggatatcctcggagcttgtctcaagcagtagctctcaaagagttccagccaaaccttttcattcttctggaagtacctgaagagatacttgttgagagagtggttggccgtagactagatcctgtaactgggagaatataccatttgaagtattctncgccagagaccgatgaaatcgctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0132E21.2" temp_strand="+" temp_description="C06SLm0132E21.2  AC211087.2 htgs_phase:3 submitted_to_sgn_as:C06SLm0132E21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="41563" stop="44974"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41863" g_stop="42089" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="227" r_length="227" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42090" i_stop="42404" i_length="315">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42405" g_stop="42503" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="326" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42504" i_stop="43589" i_length="1086">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43590" g_stop="43718" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="455" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43719" i_stop="43834" i_length="116">
            <donor d_prob="0.475" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43835" g_stop="43963" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="584" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="43964" i_stop="44564" i_length="601">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="44565" g_stop="44674" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="585" r_stop="694" r_length="110" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0132E21.2" gen_strand="+" ref_id="SGN-E345487" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>694</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0132E21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E345487" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41863" e_stop="42089"/>
          <exon e_start="42405" e_stop="42503"/>
          <exon e_start="43590" e_stop="43718"/>
          <exon e_start="43835" e_stop="43963"/>
          <exon e_start="44565" e_stop="44674"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTATTTAGCACGGAGCAGAAGCGCCATGGCTTCGTGCTGTTCATTGAGCTTCTCAACAGTCTCTTCAAAGCCTAACAAGCCTTACTCATCACCAATTTCTTCTTCTCTTGAGCTCCCCTTTACTTCCCAGTTGCCATTTTCTAAAAAATATTCACTTTATTCCAATCATACCCTTCTCCAAACTCAATGCCGGAAAACCCAATCACCGGATTGTCCCAGTTTCTTGGTACGTCTTGCAATTCTTTTGACACCCTTTTGATTTTCACGTTCAATTTTGAGTTTAGAAAAGTGAGCCCAGAATTTGAAATTAGTAATAGGTTGTATTGAACATAAATGTATATTGAAGAGTTTTACTACGCAGCTGTTGGTTTACAATATATTTCATGCTCAATCGAATGAGATGACTTGAAAGAGTTAGACTTTAGTTTGGGACTGAGATGTAGTTGATTGATTGTTTTTTTGGTATGGCTTTGTGTAGTGGCTGAGTTTTAGCCAAAAAGGGAAACTTGATTAGTGATTGAATTGTATTTTTGTGATTTAGGTTGTGGGATCTGCGAAAAAGCAAGAACCTTTGAGGGTAATGATATCGGGAGCTCCTGCTTCTGGTAAAGGAACGCAATGCGAGCTCATTACCAAGAAGGTAATGGTTCTTTTTTTTTTCTTCATAGGGACAAGTTGGTTGTTATGATCTTTTATGTTTGAATTATCTTTATGCTGTTCTATGTAGGTTTCTCTTTTTGGAATGGATGATGATCCATTGGGATTTTGGTTTTATAATTCTGAATATGAAATCTCTATTCTTGAAAGTTTATCTACTAATATAAATCGTCCCAATTTCCACTAATATGTGTGTTATAGACCAGGTTGTACAATATAGAGGTATACTTCCATTCATGACTTCTGACCATGGGTGTTTCTAAATTTGAGGACCAGTTTTTTACCATATTACTGGTATCATTCTACCCAGGACCTCTTATGACTTGACCCTTACTCCATTTGGTTCGTAGACTGATAACACAAGAACTGGTATGTGGGGATTGTTATACACTGATTGACAATACCGGCATGGTTAATACCAGTATTAGCTATGCATGTTGTATATCTAGTATAAGTCACAGGGTGATACACCTCTTTTACCACAGCCTAAAAAAGCAGAATTATCAGATTTATCTGCACTCTTGTAAACTAAAATCATCATGTAAATTTGTCCAGTTATCAGATTTGTCTTGAAAAGCATCTTACTAGCATCTGTTCAGCTGTTCCATATATTTACGTTATTTCCTTAGCATAACATGTATGTCTCCTATGTGTATTCTCTTACAATTCACTGGTACCTTGTTCCCTAGCCTCTTTATCTTGTTTATTATGAATTCTCATCTGGTTCCTCTAAATTCTCATTGGTGGGTTTGTAATATTTCCTTCAGCCGAAATTGTCCATATTATAATCAACTTTATCTTAATTATTAGCAAGTCCCTGCTACTTGAACTCACATTCTTCACATTTCTTGATTGATTTAGCTTTAGTTTGATTTCCATGCTCCTTATTCCTTCCCTTGTTTAACATGTAGTTGTAAAAAGGTATGTTGCTAGTAGCATTTGATGTTCCATTTCAAAAAATGTCTCTAGTTGCAGTCGATGTTAGTTGCTACCTTAATTACCCATTTTCCTTGTTATGTATTACCCTGTGAGAAGTAATAAATTGAATACCGTGAGCTCATATATGCAGTACGATTTGGTGCATATTGCTGCTGGAGATTTATTGAGGGCTGAAATTGCTGCAGGCACTGAAAATGGGAGGAGAGCAAAGGAGTATATGGATAAAGGACAATTGGTACCAAACGAGATAGTTGTAACGGTAGGTTTACCTGGCAAACTGGTTCCTGCTTTTGTTAGCATGCTATTTTAAAGGTTGAAAGAGATCATTAGAAAGAGTGTTTTATTCATATGTGATTTGTTGATTCCTTGTTTTAGATGGTCAAAGAGCGGTTGATGTGTCCAGACTCTCAAGAAAAGGGTTGGCTTTTAGATGGATATCCTCGGAGCTTGTCTCAAGCAGTAGCTCTCAAAGAGTTCCAGCCAAACCTTTTCATTCTTCTGGAAGTGAGGTTCTGCTATTGATATCCTCTGATTGTGTTCTCAATCTCTTTCTAGTTAAAGCCTTAAGAGGATGAAAAGGATCAACATAGAGTATCCTGCATTTAAAATTTACCTGAAAAAATCTTTGAACGGGAAAACTGTGCTTTTGGTCTGTGAAAACCTAATTTTAGCCTTCAATTGAGAGAACTGTGCGCTTTTGGTTCCTCCTCTAGCATATTTCCCTACAAGAGTCAGATTACTTCCTTAAAATGCAAAAGAGTATCAAAATAACTTTCTTAGCATAAAAGGTGAATAGTTGTATGGTTTAATAGTTGTACTTTCATGGAATTTATCAGTTGAGGGACCAAAAGCTGATACTATCAGTTGGAGGTTTAGTGGGCTTGACTGAATACTGTGATTCGTTAGTACCAAGATTACAACTTACAAATAACCAAAAAAAAATTATTTTTTTCCTTATTTTAAATATGATTAGTTTTTTCTGATTCTTTTTTGTTTCACATGTCGTATATTAAACTGCAAGAGGTTTCAGAATAAATGCACCTTCATCGAGTCATCAACCAATGTTTTAACTTTTAACAGGAACACGTTATATTGTAAATGATAGGTACCTGAAGAGATACTTGTTGAGAGAGTGGTTGGCCGTAGACTAGATCCTGTAACTGGGAGAATATACCATTTGAAGTATTCTCCGCCAGAGACCGATGAAATCGCTGC</genome_strand>
        <mrna_strand>TCTATTTAGCACGGAGCAGAAGCGCCATGGCTTCGTGCTGTTCATTGAGCTTCTCAACAGTCTCTTCAAAGCCTAACAAGCCTTACTCATCACCAATTTCTTCTTCTCTTGAGCTCCCCTTTACTTCCCAGTTGCCATTTTCTAAAAAATATTCACTTTATTCCAATCATACCCTTCTCCAAACTCAATGCCGGAAAACCCAATCACCGGATTGTCCCAGTTTCTTG...........................................................................................................................................................................................................................................................................................................................GTTGTGGGATCTGCGAAAAAGCAAGAACCTTTGAGGGTAATGATATCGGGAGCTCCTGCTTCTGGTAAAGGAACGCAATGCGAGCTCATTACCAAGAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACGATTTGGTGCATATTGCTGCTGGAGATTTATTGAGGGCTGAAATTGCTGCAGGCACTGAAAATGGGAGGAGAGCAAAGGAGTATATGGATAAAGGACAATTGGTACCAAACGAGATAGTTGTAACG....................................................................................................................ATGGTCAAAGAGCGGTTGATGTGTCCAGACTCTCAAGAAAAGGGTTGGCTTTTAGATGGATATCCTCGGAGCTTGTCTCAAGCAGTAGCTCTCAAAGAGTTCCAGCCAAACCTTTTCATTCTTCTGGAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCTGAAGAGATACTTGTTGAGAGAGTGGTTGGCCGTAGACTAGATCCTGTAACTGGGAGAATATACCATTTGAAGTATTCTNCGCCAGAGACCGATGAAATCGCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E348447" ref_strand="+" ref_description="SGN-E348447 [cTOF-30-I7]">
      <seq>tctatttagcacggagcagaagcgccatggcttcgtgctgttcattgagcttctcaacagtctcttcaaagcctaacaagccttactcatcaccaatttcttcttctcttgagctcccctttacttcccagttgccattttctaaaaaatattcactttattccaatcatacccttctccaaactcaatgccggaaaacccaatcaccggattgtcccagtttcttggttgtgggatctgcgaaaaagcaagaacctttgagggtaatgatatcgggagctcctgcttctggtaaaggaacgcaatgcgagctcattaccaagaagtacgatttggtgcatattgctgctggagatttattgagggctgaaattgctgcaggcactgaaaatgggaggagagcaaaggagtatatggataaaggacaattggtaccaaacgagatagttgtaacgatggtcaaagagcggttgatgtgtccagactctcaagaaaagggttggcttttagatggatatcctcggagcttgtctcaagcagtagctctcaaagagttccagccaaaccttttcattcttctggaagtacctgaagagatacttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0132E21.2" temp_strand="+" temp_description="C06SLm0132E21.2  AC211087.2 htgs_phase:3 submitted_to_sgn_as:C06SLm0132E21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="41563" stop="44884"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41863" g_stop="42089" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="227" r_length="227" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42090" i_stop="42404" i_length="315">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42405" g_stop="42503" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="326" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42504" i_stop="43589" i_length="1086">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43590" g_stop="43718" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="455" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43719" i_stop="43834" i_length="116">
            <donor d_prob="0.475" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43835" g_stop="43963" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="584" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="43964" i_stop="44564" i_length="601">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="44565" g_stop="44584" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="585" r_stop="604" r_length="20" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0132E21.2" gen_strand="+" ref_id="SGN-E348447" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>604</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0132E21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E348447" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41863" e_stop="42089"/>
          <exon e_start="42405" e_stop="42503"/>
          <exon e_start="43590" e_stop="43718"/>
          <exon e_start="43835" e_stop="43963"/>
          <exon e_start="44565" e_stop="44584"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTATTTAGCACGGAGCAGAAGCGCCATGGCTTCGTGCTGTTCATTGAGCTTCTCAACAGTCTCTTCAAAGCCTAACAAGCCTTACTCATCACCAATTTCTTCTTCTCTTGAGCTCCCCTTTACTTCCCAGTTGCCATTTTCTAAAAAATATTCACTTTATTCCAATCATACCCTTCTCCAAACTCAATGCCGGAAAACCCAATCACCGGATTGTCCCAGTTTCTTGGTACGTCTTGCAATTCTTTTGACACCCTTTTGATTTTCACGTTCAATTTTGAGTTTAGAAAAGTGAGCCCAGAATTTGAAATTAGTAATAGGTTGTATTGAACATAAATGTATATTGAAGAGTTTTACTACGCAGCTGTTGGTTTACAATATATTTCATGCTCAATCGAATGAGATGACTTGAAAGAGTTAGACTTTAGTTTGGGACTGAGATGTAGTTGATTGATTGTTTTTTTGGTATGGCTTTGTGTAGTGGCTGAGTTTTAGCCAAAAAGGGAAACTTGATTAGTGATTGAATTGTATTTTTGTGATTTAGGTTGTGGGATCTGCGAAAAAGCAAGAACCTTTGAGGGTAATGATATCGGGAGCTCCTGCTTCTGGTAAAGGAACGCAATGCGAGCTCATTACCAAGAAGGTAATGGTTCTTTTTTTTTTCTTCATAGGGACAAGTTGGTTGTTATGATCTTTTATGTTTGAATTATCTTTATGCTGTTCTATGTAGGTTTCTCTTTTTGGAATGGATGATGATCCATTGGGATTTTGGTTTTATAATTCTGAATATGAAATCTCTATTCTTGAAAGTTTATCTACTAATATAAATCGTCCCAATTTCCACTAATATGTGTGTTATAGACCAGGTTGTACAATATAGAGGTATACTTCCATTCATGACTTCTGACCATGGGTGTTTCTAAATTTGAGGACCAGTTTTTTACCATATTACTGGTATCATTCTACCCAGGACCTCTTATGACTTGACCCTTACTCCATTTGGTTCGTAGACTGATAACACAAGAACTGGTATGTGGGGATTGTTATACACTGATTGACAATACCGGCATGGTTAATACCAGTATTAGCTATGCATGTTGTATATCTAGTATAAGTCACAGGGTGATACACCTCTTTTACCACAGCCTAAAAAAGCAGAATTATCAGATTTATCTGCACTCTTGTAAACTAAAATCATCATGTAAATTTGTCCAGTTATCAGATTTGTCTTGAAAAGCATCTTACTAGCATCTGTTCAGCTGTTCCATATATTTACGTTATTTCCTTAGCATAACATGTATGTCTCCTATGTGTATTCTCTTACAATTCACTGGTACCTTGTTCCCTAGCCTCTTTATCTTGTTTATTATGAATTCTCATCTGGTTCCTCTAAATTCTCATTGGTGGGTTTGTAATATTTCCTTCAGCCGAAATTGTCCATATTATAATCAACTTTATCTTAATTATTAGCAAGTCCCTGCTACTTGAACTCACATTCTTCACATTTCTTGATTGATTTAGCTTTAGTTTGATTTCCATGCTCCTTATTCCTTCCCTTGTTTAACATGTAGTTGTAAAAAGGTATGTTGCTAGTAGCATTTGATGTTCCATTTCAAAAAATGTCTCTAGTTGCAGTCGATGTTAGTTGCTACCTTAATTACCCATTTTCCTTGTTATGTATTACCCTGTGAGAAGTAATAAATTGAATACCGTGAGCTCATATATGCAGTACGATTTGGTGCATATTGCTGCTGGAGATTTATTGAGGGCTGAAATTGCTGCAGGCACTGAAAATGGGAGGAGAGCAAAGGAGTATATGGATAAAGGACAATTGGTACCAAACGAGATAGTTGTAACGGTAGGTTTACCTGGCAAACTGGTTCCTGCTTTTGTTAGCATGCTATTTTAAAGGTTGAAAGAGATCATTAGAAAGAGTGTTTTATTCATATGTGATTTGTTGATTCCTTGTTTTAGATGGTCAAAGAGCGGTTGATGTGTCCAGACTCTCAAGAAAAGGGTTGGCTTTTAGATGGATATCCTCGGAGCTTGTCTCAAGCAGTAGCTCTCAAAGAGTTCCAGCCAAACCTTTTCATTCTTCTGGAAGTGAGGTTCTGCTATTGATATCCTCTGATTGTGTTCTCAATCTCTTTCTAGTTAAAGCCTTAAGAGGATGAAAAGGATCAACATAGAGTATCCTGCATTTAAAATTTACCTGAAAAAATCTTTGAACGGGAAAACTGTGCTTTTGGTCTGTGAAAACCTAATTTTAGCCTTCAATTGAGAGAACTGTGCGCTTTTGGTTCCTCCTCTAGCATATTTCCCTACAAGAGTCAGATTACTTCCTTAAAATGCAAAAGAGTATCAAAATAACTTTCTTAGCATAAAAGGTGAATAGTTGTATGGTTTAATAGTTGTACTTTCATGGAATTTATCAGTTGAGGGACCAAAAGCTGATACTATCAGTTGGAGGTTTAGTGGGCTTGACTGAATACTGTGATTCGTTAGTACCAAGATTACAACTTACAAATAACCAAAAAAAAATTATTTTTTTCCTTATTTTAAATATGATTAGTTTTTTCTGATTCTTTTTTGTTTCACATGTCGTATATTAAACTGCAAGAGGTTTCAGAATAAATGCACCTTCATCGAGTCATCAACCAATGTTTTAACTTTTAACAGGAACACGTTATATTGTAAATGATAGGTACCTGAAGAGATACTTGT</genome_strand>
        <mrna_strand>TCTATTTAGCACGGAGCAGAAGCGCCATGGCTTCGTGCTGTTCATTGAGCTTCTCAACAGTCTCTTCAAAGCCTAACAAGCCTTACTCATCACCAATTTCTTCTTCTCTTGAGCTCCCCTTTACTTCCCAGTTGCCATTTTCTAAAAAATATTCACTTTATTCCAATCATACCCTTCTCCAAACTCAATGCCGGAAAACCCAATCACCGGATTGTCCCAGTTTCTTG...........................................................................................................................................................................................................................................................................................................................GTTGTGGGATCTGCGAAAAAGCAAGAACCTTTGAGGGTAATGATATCGGGAGCTCCTGCTTCTGGTAAAGGAACGCAATGCGAGCTCATTACCAAGAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACGATTTGGTGCATATTGCTGCTGGAGATTTATTGAGGGCTGAAATTGCTGCAGGCACTGAAAATGGGAGGAGAGCAAAGGAGTATATGGATAAAGGACAATTGGTACCAAACGAGATAGTTGTAACG....................................................................................................................ATGGTCAAAGAGCGGTTGATGTGTCCAGACTCTCAAGAAAAGGGTTGGCTTTTAGATGGATATCCTCGGAGCTTGTCTCAAGCAGTAGCTCTCAAAGAGTTCCAGCCAAACCTTTTCATTCTTCTGGAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCTGAAGAGATACTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E277396" ref_strand="+" ref_description="SGN-E277396 [cLER-3-M20]">
      <seq>tagcacggagcagaagcgccatggcttcgtgctgttcattgagcttctcaacagtctcttcaaagcctaacaagccttactcatcaccaatttcttcttctcttgagctcccctttacttcccagttgccattttctaaaaaatattcactttattccaatcatacccttctccaaactcaatgccggaaaacccaatcaccggattgtcccagtttcttggttgtgggatctgcgaaaaagcaagaacctttgagggtaatgatatcgggagctcctgcttctggtaaaggaacgcaatgcgagctcattaccaagaagtacgatttggtgcatattgctgctggagatttattgagggctgaaattgctgcaggcactgaaaatgggaggagagcaaaggagtatatggataaaggacaattggtaccaaacgagatagttgtaacgatggtcaaagagcggttgatgtgtccagactctcaagaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0132E21.2" temp_strand="+" temp_description="C06SLm0132E21.2  AC211087.2 htgs_phase:3 submitted_to_sgn_as:C06SLm0132E21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="41569" stop="44175"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41869" g_stop="42089" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="221" r_length="221" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42090" i_stop="42404" i_length="315">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42405" g_stop="42503" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="320" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42504" i_stop="43589" i_length="1086">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43590" g_stop="43718" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="449" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43719" i_stop="43834" i_length="116">
            <donor d_prob="0.475" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43835" g_stop="43875" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="450" r_stop="490" r_length="41" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0132E21.2" gen_strand="+" ref_id="SGN-E277396" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>490</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0132E21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E277396" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41869" e_stop="42089"/>
          <exon e_start="42405" e_stop="42503"/>
          <exon e_start="43590" e_stop="43718"/>
          <exon e_start="43835" e_stop="43875"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGCACGGAGCAGAAGCGCCATGGCTTCGTGCTGTTCATTGAGCTTCTCAACAGTCTCTTCAAAGCCTAACAAGCCTTACTCATCACCAATTTCTTCTTCTCTTGAGCTCCCCTTTACTTCCCAGTTGCCATTTTCTAAAAAATATTCACTTTATTCCAATCATACCCTTCTCCAAACTCAATGCCGGAAAACCCAATCACCGGATTGTCCCAGTTTCTTGGTACGTCTTGCAATTCTTTTGACACCCTTTTGATTTTCACGTTCAATTTTGAGTTTAGAAAAGTGAGCCCAGAATTTGAAATTAGTAATAGGTTGTATTGAACATAAATGTATATTGAAGAGTTTTACTACGCAGCTGTTGGTTTACAATATATTTCATGCTCAATCGAATGAGATGACTTGAAAGAGTTAGACTTTAGTTTGGGACTGAGATGTAGTTGATTGATTGTTTTTTTGGTATGGCTTTGTGTAGTGGCTGAGTTTTAGCCAAAAAGGGAAACTTGATTAGTGATTGAATTGTATTTTTGTGATTTAGGTTGTGGGATCTGCGAAAAAGCAAGAACCTTTGAGGGTAATGATATCGGGAGCTCCTGCTTCTGGTAAAGGAACGCAATGCGAGCTCATTACCAAGAAGGTAATGGTTCTTTTTTTTTTCTTCATAGGGACAAGTTGGTTGTTATGATCTTTTATGTTTGAATTATCTTTATGCTGTTCTATGTAGGTTTCTCTTTTTGGAATGGATGATGATCCATTGGGATTTTGGTTTTATAATTCTGAATATGAAATCTCTATTCTTGAAAGTTTATCTACTAATATAAATCGTCCCAATTTCCACTAATATGTGTGTTATAGACCAGGTTGTACAATATAGAGGTATACTTCCATTCATGACTTCTGACCATGGGTGTTTCTAAATTTGAGGACCAGTTTTTTACCATATTACTGGTATCATTCTACCCAGGACCTCTTATGACTTGACCCTTACTCCATTTGGTTCGTAGACTGATAACACAAGAACTGGTATGTGGGGATTGTTATACACTGATTGACAATACCGGCATGGTTAATACCAGTATTAGCTATGCATGTTGTATATCTAGTATAAGTCACAGGGTGATACACCTCTTTTACCACAGCCTAAAAAAGCAGAATTATCAGATTTATCTGCACTCTTGTAAACTAAAATCATCATGTAAATTTGTCCAGTTATCAGATTTGTCTTGAAAAGCATCTTACTAGCATCTGTTCAGCTGTTCCATATATTTACGTTATTTCCTTAGCATAACATGTATGTCTCCTATGTGTATTCTCTTACAATTCACTGGTACCTTGTTCCCTAGCCTCTTTATCTTGTTTATTATGAATTCTCATCTGGTTCCTCTAAATTCTCATTGGTGGGTTTGTAATATTTCCTTCAGCCGAAATTGTCCATATTATAATCAACTTTATCTTAATTATTAGCAAGTCCCTGCTACTTGAACTCACATTCTTCACATTTCTTGATTGATTTAGCTTTAGTTTGATTTCCATGCTCCTTATTCCTTCCCTTGTTTAACATGTAGTTGTAAAAAGGTATGTTGCTAGTAGCATTTGATGTTCCATTTCAAAAAATGTCTCTAGTTGCAGTCGATGTTAGTTGCTACCTTAATTACCCATTTTCCTTGTTATGTATTACCCTGTGAGAAGTAATAAATTGAATACCGTGAGCTCATATATGCAGTACGATTTGGTGCATATTGCTGCTGGAGATTTATTGAGGGCTGAAATTGCTGCAGGCACTGAAAATGGGAGGAGAGCAAAGGAGTATATGGATAAAGGACAATTGGTACCAAACGAGATAGTTGTAACGGTAGGTTTACCTGGCAAACTGGTTCCTGCTTTTGTTAGCATGCTATTTTAAAGGTTGAAAGAGATCATTAGAAAGAGTGTTTTATTCATATGTGATTTGTTGATTCCTTGTTTTAGATGGTCAAAGAGCGGTTGATGTGTCCAGACTCTCAAGAAAA</genome_strand>
        <mrna_strand>TAGCACGGAGCAGAAGCGCCATGGCTTCGTGCTGTTCATTGAGCTTCTCAACAGTCTCTTCAAAGCCTAACAAGCCTTACTCATCACCAATTTCTTCTTCTCTTGAGCTCCCCTTTACTTCCCAGTTGCCATTTTCTAAAAAATATTCACTTTATTCCAATCATACCCTTCTCCAAACTCAATGCCGGAAAACCCAATCACCGGATTGTCCCAGTTTCTTG...........................................................................................................................................................................................................................................................................................................................GTTGTGGGATCTGCGAAAAAGCAAGAACCTTTGAGGGTAATGATATCGGGAGCTCCTGCTTCTGGTAAAGGAACGCAATGCGAGCTCATTACCAAGAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACGATTTGGTGCATATTGCTGCTGGAGATTTATTGAGGGCTGAAATTGCTGCAGGCACTGAAAATGGGAGGAGAGCAAAGGAGTATATGGATAAAGGACAATTGGTACCAAACGAGATAGTTGTAACG....................................................................................................................ATGGTCAAAGAGCGGTTGATGTGTCCAGACTCTCAAGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E343131" ref_strand="+" ref_description="SGN-E343131 [cTOF-17-G22]">
      <seq>cacggagcagaagcgccatggcttcgtgctgttcattgagcttctcaacagtctcttcaaagcctaacaagccttactcatcaccaatttcttcttctcttgagctcccctttacttcccagttgccattttctaaaaaatattcactttattccaatcatacccttctccaaactcaatgccggaaaacccaatcaccggattgtcccagtttcttggttgtgggatctgcgaaaaagcaagaacctttgagggtaatgatatcgggagctcctgcttctggtaaaggaacgcaatgcgagctcattaccaagaagtacgatttggtgcatattgctgctggagatttattgagggctgaaattgctgcaggcactgaaaatgggaggagagcaaaggagtatatggataaaggacaattggtaccaaacgagatagttgtaacgatggtcaaagagcggttgatgtgtccagactctcaagaaaagggttggcttttagatggatatcctcggagcttgtctcaagcagtagctctcaaagagttccagccaaaccttttcattcttctggaagtacctgaagagatacttgttgagagagtggttggccgtagactagatcctgtaactgggagaatataccattttgagtattctccgccagagaccgatgaaatcgctgcaaggcttacccagcgctttgatgatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0132E21.2" temp_strand="+" temp_description="C06SLm0132E21.2  AC211087.2 htgs_phase:3 submitted_to_sgn_as:C06SLm0132E21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="41572" stop="45001"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41872" g_stop="42089" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="218" r_length="218" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42090" i_stop="42404" i_length="315">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42405" g_stop="42503" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="317" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42504" i_stop="43589" i_length="1086">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43590" g_stop="43718" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="446" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43719" i_stop="43834" i_length="116">
            <donor d_prob="0.475" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43835" g_stop="43963" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="447" r_stop="575" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="43964" i_stop="44564" i_length="601">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="44565" g_stop="44701" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="576" r_stop="712" r_length="137" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0132E21.2" gen_strand="+" ref_id="SGN-E343131" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>712</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0132E21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E343131" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41872" e_stop="42089"/>
          <exon e_start="42405" e_stop="42503"/>
          <exon e_start="43590" e_stop="43718"/>
          <exon e_start="43835" e_stop="43963"/>
          <exon e_start="44565" e_stop="44701"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACGGAGCAGAAGCGCCATGGCTTCGTGCTGTTCATTGAGCTTCTCAACAGTCTCTTCAAAGCCTAACAAGCCTTACTCATCACCAATTTCTTCTTCTCTTGAGCTCCCCTTTACTTCCCAGTTGCCATTTTCTAAAAAATATTCACTTTATTCCAATCATACCCTTCTCCAAACTCAATGCCGGAAAACCCAATCACCGGATTGTCCCAGTTTCTTGGTACGTCTTGCAATTCTTTTGACACCCTTTTGATTTTCACGTTCAATTTTGAGTTTAGAAAAGTGAGCCCAGAATTTGAAATTAGTAATAGGTTGTATTGAACATAAATGTATATTGAAGAGTTTTACTACGCAGCTGTTGGTTTACAATATATTTCATGCTCAATCGAATGAGATGACTTGAAAGAGTTAGACTTTAGTTTGGGACTGAGATGTAGTTGATTGATTGTTTTTTTGGTATGGCTTTGTGTAGTGGCTGAGTTTTAGCCAAAAAGGGAAACTTGATTAGTGATTGAATTGTATTTTTGTGATTTAGGTTGTGGGATCTGCGAAAAAGCAAGAACCTTTGAGGGTAATGATATCGGGAGCTCCTGCTTCTGGTAAAGGAACGCAATGCGAGCTCATTACCAAGAAGGTAATGGTTCTTTTTTTTTTCTTCATAGGGACAAGTTGGTTGTTATGATCTTTTATGTTTGAATTATCTTTATGCTGTTCTATGTAGGTTTCTCTTTTTGGAATGGATGATGATCCATTGGGATTTTGGTTTTATAATTCTGAATATGAAATCTCTATTCTTGAAAGTTTATCTACTAATATAAATCGTCCCAATTTCCACTAATATGTGTGTTATAGACCAGGTTGTACAATATAGAGGTATACTTCCATTCATGACTTCTGACCATGGGTGTTTCTAAATTTGAGGACCAGTTTTTTACCATATTACTGGTATCATTCTACCCAGGACCTCTTATGACTTGACCCTTACTCCATTTGGTTCGTAGACTGATAACACAAGAACTGGTATGTGGGGATTGTTATACACTGATTGACAATACCGGCATGGTTAATACCAGTATTAGCTATGCATGTTGTATATCTAGTATAAGTCACAGGGTGATACACCTCTTTTACCACAGCCTAAAAAAGCAGAATTATCAGATTTATCTGCACTCTTGTAAACTAAAATCATCATGTAAATTTGTCCAGTTATCAGATTTGTCTTGAAAAGCATCTTACTAGCATCTGTTCAGCTGTTCCATATATTTACGTTATTTCCTTAGCATAACATGTATGTCTCCTATGTGTATTCTCTTACAATTCACTGGTACCTTGTTCCCTAGCCTCTTTATCTTGTTTATTATGAATTCTCATCTGGTTCCTCTAAATTCTCATTGGTGGGTTTGTAATATTTCCTTCAGCCGAAATTGTCCATATTATAATCAACTTTATCTTAATTATTAGCAAGTCCCTGCTACTTGAACTCACATTCTTCACATTTCTTGATTGATTTAGCTTTAGTTTGATTTCCATGCTCCTTATTCCTTCCCTTGTTTAACATGTAGTTGTAAAAAGGTATGTTGCTAGTAGCATTTGATGTTCCATTTCAAAAAATGTCTCTAGTTGCAGTCGATGTTAGTTGCTACCTTAATTACCCATTTTCCTTGTTATGTATTACCCTGTGAGAAGTAATAAATTGAATACCGTGAGCTCATATATGCAGTACGATTTGGTGCATATTGCTGCTGGAGATTTATTGAGGGCTGAAATTGCTGCAGGCACTGAAAATGGGAGGAGAGCAAAGGAGTATATGGATAAAGGACAATTGGTACCAAACGAGATAGTTGTAACGGTAGGTTTACCTGGCAAACTGGTTCCTGCTTTTGTTAGCATGCTATTTTAAAGGTTGAAAGAGATCATTAGAAAGAGTGTTTTATTCATATGTGATTTGTTGATTCCTTGTTTTAGATGGTCAAAGAGCGGTTGATGTGTCCAGACTCTCAAGAAAAGGGTTGGCTTTTAGATGGATATCCTCGGAGCTTGTCTCAAGCAGTAGCTCTCAAAGAGTTCCAGCCAAACCTTTTCATTCTTCTGGAAGTGAGGTTCTGCTATTGATATCCTCTGATTGTGTTCTCAATCTCTTTCTAGTTAAAGCCTTAAGAGGATGAAAAGGATCAACATAGAGTATCCTGCATTTAAAATTTACCTGAAAAAATCTTTGAACGGGAAAACTGTGCTTTTGGTCTGTGAAAACCTAATTTTAGCCTTCAATTGAGAGAACTGTGCGCTTTTGGTTCCTCCTCTAGCATATTTCCCTACAAGAGTCAGATTACTTCCTTAAAATGCAAAAGAGTATCAAAATAACTTTCTTAGCATAAAAGGTGAATAGTTGTATGGTTTAATAGTTGTACTTTCATGGAATTTATCAGTTGAGGGACCAAAAGCTGATACTATCAGTTGGAGGTTTAGTGGGCTTGACTGAATACTGTGATTCGTTAGTACCAAGATTACAACTTACAAATAACCAAAAAAAAATTATTTTTTTCCTTATTTTAAATATGATTAGTTTTTTCTGATTCTTTTTTGTTTCACATGTCGTATATTAAACTGCAAGAGGTTTCAGAATAAATGCACCTTCATCGAGTCATCAACCAATGTTTTAACTTTTAACAGGAACACGTTATATTGTAAATGATAGGTACCTGAAGAGATACTTGTTGAGAGAGTGGTTGGCCGTAGACTAGATCCTGTAACTGGGAGAATATACCATTTGAAGTATTCTCCGCCAGAGACCGATGAAATCGCTGCAAGGCTTACCCAGCGCTTTGATGATAC</genome_strand>
        <mrna_strand>CACGGAGCAGAAGCGCCATGGCTTCGTGCTGTTCATTGAGCTTCTCAACAGTCTCTTCAAAGCCTAACAAGCCTTACTCATCACCAATTTCTTCTTCTCTTGAGCTCCCCTTTACTTCCCAGTTGCCATTTTCTAAAAAATATTCACTTTATTCCAATCATACCCTTCTCCAAACTCAATGCCGGAAAACCCAATCACCGGATTGTCCCAGTTTCTTG...........................................................................................................................................................................................................................................................................................................................GTTGTGGGATCTGCGAAAAAGCAAGAACCTTTGAGGGTAATGATATCGGGAGCTCCTGCTTCTGGTAAAGGAACGCAATGCGAGCTCATTACCAAGAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACGATTTGGTGCATATTGCTGCTGGAGATTTATTGAGGGCTGAAATTGCTGCAGGCACTGAAAATGGGAGGAGAGCAAAGGAGTATATGGATAAAGGACAATTGGTACCAAACGAGATAGTTGTAACG....................................................................................................................ATGGTCAAAGAGCGGTTGATGTGTCCAGACTCTCAAGAAAAGGGTTGGCTTTTAGATGGATATCCTCGGAGCTTGTCTCAAGCAGTAGCTCTCAAAGAGTTCCAGCCAAACCTTTTCATTCTTCTGGAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCTGAAGAGATACTTGTTGAGAGAGTGGTTGGCCGTAGACTAGATCCTGTAACTGGGAGAATATACCATTTTGAGTATTCTCCGCCAGAGACCGATGAAATCGCTGCAAGGCTTACCCAGCGCTTTGATGATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E325958" ref_strand="+" ref_description="SGN-E325958 [cTOC-12-H4]">
      <seq>ccatggcttcgtgctgttcattgagcttctcaacagtctcttcaaagcctaacaagccttactcatcaccaatttcttcttctcttgagctcccctttacttcccagttgccattttctaaaaaatattcactttattccaatcatacccttctccaaactcaatgccggaaaacccaatcaccggattgtcccagtttcttggttgtgggatctgcgaaaaagcaagaacctttgagggtaatgatatcgggagctcctgcttctggtaaaggaacgcaatgcgagctcattaccaagaagtacgatttggtgcatattgctgctggagatttattgagggctgaaattgctgcaggcactgaaaatgggaggagagcaaaggagtatatggataaaggacaattggtaccaaacgagatagttgtaacgatggtcaaagagcggttgatgtgtccagactctcaagaaaagggttggcttttagatggatatcctcggagcttgtctcaagcagtagctctcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0132E21.2" temp_strand="+" temp_description="C06SLm0132E21.2  AC211087.2 htgs_phase:3 submitted_to_sgn_as:C06SLm0132E21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="41587" stop="44229"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41887" g_stop="42089" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="203" r_length="203" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42090" i_stop="42404" i_length="315">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42405" g_stop="42503" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="302" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42504" i_stop="43589" i_length="1086">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43590" g_stop="43718" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="431" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43719" i_stop="43834" i_length="116">
            <donor d_prob="0.475" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43835" g_stop="43929" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="432" r_stop="526" r_length="95" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0132E21.2" gen_strand="+" ref_id="SGN-E325958" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0132E21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E325958" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41887" e_stop="42089"/>
          <exon e_start="42405" e_stop="42503"/>
          <exon e_start="43590" e_stop="43718"/>
          <exon e_start="43835" e_stop="43929"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATGGCTTCGTGCTGTTCATTGAGCTTCTCAACAGTCTCTTCAAAGCCTAACAAGCCTTACTCATCACCAATTTCTTCTTCTCTTGAGCTCCCCTTTACTTCCCAGTTGCCATTTTCTAAAAAATATTCACTTTATTCCAATCATACCCTTCTCCAAACTCAATGCCGGAAAACCCAATCACCGGATTGTCCCAGTTTCTTGGTACGTCTTGCAATTCTTTTGACACCCTTTTGATTTTCACGTTCAATTTTGAGTTTAGAAAAGTGAGCCCAGAATTTGAAATTAGTAATAGGTTGTATTGAACATAAATGTATATTGAAGAGTTTTACTACGCAGCTGTTGGTTTACAATATATTTCATGCTCAATCGAATGAGATGACTTGAAAGAGTTAGACTTTAGTTTGGGACTGAGATGTAGTTGATTGATTGTTTTTTTGGTATGGCTTTGTGTAGTGGCTGAGTTTTAGCCAAAAAGGGAAACTTGATTAGTGATTGAATTGTATTTTTGTGATTTAGGTTGTGGGATCTGCGAAAAAGCAAGAACCTTTGAGGGTAATGATATCGGGAGCTCCTGCTTCTGGTAAAGGAACGCAATGCGAGCTCATTACCAAGAAGGTAATGGTTCTTTTTTTTTTCTTCATAGGGACAAGTTGGTTGTTATGATCTTTTATGTTTGAATTATCTTTATGCTGTTCTATGTAGGTTTCTCTTTTTGGAATGGATGATGATCCATTGGGATTTTGGTTTTATAATTCTGAATATGAAATCTCTATTCTTGAAAGTTTATCTACTAATATAAATCGTCCCAATTTCCACTAATATGTGTGTTATAGACCAGGTTGTACAATATAGAGGTATACTTCCATTCATGACTTCTGACCATGGGTGTTTCTAAATTTGAGGACCAGTTTTTTACCATATTACTGGTATCATTCTACCCAGGACCTCTTATGACTTGACCCTTACTCCATTTGGTTCGTAGACTGATAACACAAGAACTGGTATGTGGGGATTGTTATACACTGATTGACAATACCGGCATGGTTAATACCAGTATTAGCTATGCATGTTGTATATCTAGTATAAGTCACAGGGTGATACACCTCTTTTACCACAGCCTAAAAAAGCAGAATTATCAGATTTATCTGCACTCTTGTAAACTAAAATCATCATGTAAATTTGTCCAGTTATCAGATTTGTCTTGAAAAGCATCTTACTAGCATCTGTTCAGCTGTTCCATATATTTACGTTATTTCCTTAGCATAACATGTATGTCTCCTATGTGTATTCTCTTACAATTCACTGGTACCTTGTTCCCTAGCCTCTTTATCTTGTTTATTATGAATTCTCATCTGGTTCCTCTAAATTCTCATTGGTGGGTTTGTAATATTTCCTTCAGCCGAAATTGTCCATATTATAATCAACTTTATCTTAATTATTAGCAAGTCCCTGCTACTTGAACTCACATTCTTCACATTTCTTGATTGATTTAGCTTTAGTTTGATTTCCATGCTCCTTATTCCTTCCCTTGTTTAACATGTAGTTGTAAAAAGGTATGTTGCTAGTAGCATTTGATGTTCCATTTCAAAAAATGTCTCTAGTTGCAGTCGATGTTAGTTGCTACCTTAATTACCCATTTTCCTTGTTATGTATTACCCTGTGAGAAGTAATAAATTGAATACCGTGAGCTCATATATGCAGTACGATTTGGTGCATATTGCTGCTGGAGATTTATTGAGGGCTGAAATTGCTGCAGGCACTGAAAATGGGAGGAGAGCAAAGGAGTATATGGATAAAGGACAATTGGTACCAAACGAGATAGTTGTAACGGTAGGTTTACCTGGCAAACTGGTTCCTGCTTTTGTTAGCATGCTATTTTAAAGGTTGAAAGAGATCATTAGAAAGAGTGTTTTATTCATATGTGATTTGTTGATTCCTTGTTTTAGATGGTCAAAGAGCGGTTGATGTGTCCAGACTCTCAAGAAAAGGGTTGGCTTTTAGATGGATATCCTCGGAGCTTGTCTCAAGCAGTAGCTCTCAA</genome_strand>
        <mrna_strand>CCATGGCTTCGTGCTGTTCATTGAGCTTCTCAACAGTCTCTTCAAAGCCTAACAAGCCTTACTCATCACCAATTTCTTCTTCTCTTGAGCTCCCCTTTACTTCCCAGTTGCCATTTTCTAAAAAATATTCACTTTATTCCAATCATACCCTTCTCCAAACTCAATGCCGGAAAACCCAATCACCGGATTGTCCCAGTTTCTTG...........................................................................................................................................................................................................................................................................................................................GTTGTGGGATCTGCGAAAAAGCAAGAACCTTTGAGGGTAATGATATCGGGAGCTCCTGCTTCTGGTAAAGGAACGCAATGCGAGCTCATTACCAAGAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACGATTTGGTGCATATTGCTGCTGGAGATTTATTGAGGGCTGAAATTGCTGCAGGCACTGAAAATGGGAGGAGAGCAAAGGAGTATATGGATAAAGGACAATTGGTACCAAACGAGATAGTTGTAACG....................................................................................................................ATGGTCAAAGAGCGGTTGATGTGTCCAGACTCTCAAGAAAAGGGTTGGCTTTTAGATGGATATCCTCGGAGCTTGTCTCAAGCAGTAGCTCTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E359334" ref_strand="+" ref_description="SGN-E359334 [cLHT-31-L19]">
      <seq>cttcgtgctgttcattgagcttctcaacagtctcttcaaagcctaacaagccgtactcatcaccaatttcttcttctcttgagctccccttaacttcccagttgccattttctaaaaaatattcactttattccaatcatacccttctccaaactcaatgccggaaaacccaatcaccggattgtcccagtttcttggttgtggggtctgcgaaaaagcaagaacctttgagggtaatgatatcgggagctcctgcttctggtaaaggaacgcaatgcgagctcattaccaagaagtacgatttggtgcatattgctgctggagatttattgagggctgaaattgctgcaggcactgaaaatgggtggagagcaaaggagtatatggataaaggacaattggtaccaaacgagatagttgtaacgatggtcaaagagcggttgatgcgtccagactctcaagaaaagggttggcttttagatggatatcctcggagcttgtctcaagctgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0132E21.2" temp_strand="+" temp_description="C06SLm0132E21.2  AC211087.2 htgs_phase:3 submitted_to_sgn_as:C06SLm0132E21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="41593" stop="44220"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41893" g_stop="42089" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="197" r_length="197" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42090" i_stop="42404" i_length="315">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42405" g_stop="42503" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="296" r_length="99" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42504" i_stop="43589" i_length="1086">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43590" g_stop="43718" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="425" r_length="129" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43719" i_stop="43834" i_length="116">
            <donor d_prob="0.475" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43835" g_stop="43920" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="426" r_stop="511" r_length="86" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0132E21.2" gen_strand="+" ref_id="SGN-E359334" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>511</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0132E21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E359334" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41893" e_stop="42089"/>
          <exon e_start="42405" e_stop="42503"/>
          <exon e_start="43590" e_stop="43718"/>
          <exon e_start="43835" e_stop="43920"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCGTGCTGTTCATTGAGCTTCTCAACAGTCTCTTCAAAGCCTAACAAGCCTTACTCATCACCAATTTCTTCTTCTCTTGAGCTCCCCTTTACTTCCCAGTTGCCATTTTCTAAAAAATATTCACTTTATTCCAATCATACCCTTCTCCAAACTCAATGCCGGAAAACCCAATCACCGGATTGTCCCAGTTTCTTGGTACGTCTTGCAATTCTTTTGACACCCTTTTGATTTTCACGTTCAATTTTGAGTTTAGAAAAGTGAGCCCAGAATTTGAAATTAGTAATAGGTTGTATTGAACATAAATGTATATTGAAGAGTTTTACTACGCAGCTGTTGGTTTACAATATATTTCATGCTCAATCGAATGAGATGACTTGAAAGAGTTAGACTTTAGTTTGGGACTGAGATGTAGTTGATTGATTGTTTTTTTGGTATGGCTTTGTGTAGTGGCTGAGTTTTAGCCAAAAAGGGAAACTTGATTAGTGATTGAATTGTATTTTTGTGATTTAGGTTGTGGGATCTGCGAAAAAGCAAGAACCTTTGAGGGTAATGATATCGGGAGCTCCTGCTTCTGGTAAAGGAACGCAATGCGAGCTCATTACCAAGAAGGTAATGGTTCTTTTTTTTTTCTTCATAGGGACAAGTTGGTTGTTATGATCTTTTATGTTTGAATTATCTTTATGCTGTTCTATGTAGGTTTCTCTTTTTGGAATGGATGATGATCCATTGGGATTTTGGTTTTATAATTCTGAATATGAAATCTCTATTCTTGAAAGTTTATCTACTAATATAAATCGTCCCAATTTCCACTAATATGTGTGTTATAGACCAGGTTGTACAATATAGAGGTATACTTCCATTCATGACTTCTGACCATGGGTGTTTCTAAATTTGAGGACCAGTTTTTTACCATATTACTGGTATCATTCTACCCAGGACCTCTTATGACTTGACCCTTACTCCATTTGGTTCGTAGACTGATAACACAAGAACTGGTATGTGGGGATTGTTATACACTGATTGACAATACCGGCATGGTTAATACCAGTATTAGCTATGCATGTTGTATATCTAGTATAAGTCACAGGGTGATACACCTCTTTTACCACAGCCTAAAAAAGCAGAATTATCAGATTTATCTGCACTCTTGTAAACTAAAATCATCATGTAAATTTGTCCAGTTATCAGATTTGTCTTGAAAAGCATCTTACTAGCATCTGTTCAGCTGTTCCATATATTTACGTTATTTCCTTAGCATAACATGTATGTCTCCTATGTGTATTCTCTTACAATTCACTGGTACCTTGTTCCCTAGCCTCTTTATCTTGTTTATTATGAATTCTCATCTGGTTCCTCTAAATTCTCATTGGTGGGTTTGTAATATTTCCTTCAGCCGAAATTGTCCATATTATAATCAACTTTATCTTAATTATTAGCAAGTCCCTGCTACTTGAACTCACATTCTTCACATTTCTTGATTGATTTAGCTTTAGTTTGATTTCCATGCTCCTTATTCCTTCCCTTGTTTAACATGTAGTTGTAAAAAGGTATGTTGCTAGTAGCATTTGATGTTCCATTTCAAAAAATGTCTCTAGTTGCAGTCGATGTTAGTTGCTACCTTAATTACCCATTTTCCTTGTTATGTATTACCCTGTGAGAAGTAATAAATTGAATACCGTGAGCTCATATATGCAGTACGATTTGGTGCATATTGCTGCTGGAGATTTATTGAGGGCTGAAATTGCTGCAGGCACTGAAAATGGGAGGAGAGCAAAGGAGTATATGGATAAAGGACAATTGGTACCAAACGAGATAGTTGTAACGGTAGGTTTACCTGGCAAACTGGTTCCTGCTTTTGTTAGCATGCTATTTTAAAGGTTGAAAGAGATCATTAGAAAGAGTGTTTTATTCATATGTGATTTGTTGATTCCTTGTTTTAGATGGTCAAAGAGCGGTTGATGTGTCCAGACTCTCAAGAAAAGGGTTGGCTTTTAGATGGATATCCTCGGAGCTTGTCTCAAGCAGT</genome_strand>
        <mrna_strand>CTTCGTGCTGTTCATTGAGCTTCTCAACAGTCTCTTCAAAGCCTAACAAGCCGTACTCATCACCAATTTCTTCTTCTCTTGAGCTCCCCTTAACTTCCCAGTTGCCATTTTCTAAAAAATATTCACTTTATTCCAATCATACCCTTCTCCAAACTCAATGCCGGAAAACCCAATCACCGGATTGTCCCAGTTTCTTG...........................................................................................................................................................................................................................................................................................................................GTTGTGGGGTCTGCGAAAAAGCAAGAACCTTTGAGGGTAATGATATCGGGAGCTCCTGCTTCTGGTAAAGGAACGCAATGCGAGCTCATTACCAAGAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACGATTTGGTGCATATTGCTGCTGGAGATTTATTGAGGGCTGAAATTGCTGCAGGCACTGAAAATGGGTGGAGAGCAAAGGAGTATATGGATAAAGGACAATTGGTACCAAACGAGATAGTTGTAACG....................................................................................................................ATGGTCAAAGAGCGGTTGATGCGTCCAGACTCTCAAGAAAAGGGTTGGCTTTTAGATGGATATCCTCGGAGCTTGTCTCAAGCTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E254565" ref_strand="+" ref_description="SGN-E254565 [cLEG-29-L21]">
      <seq>cagtctcttcaaagcctaacaagccttactcatcaccaatttcttcttctcttgagctcccctttacttcccagttgccattttctaaaaaatattcactttattccaatcatacccttctccaaactcaatgccggaaaacccaatcaccgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0132E21.2" temp_strand="+" temp_description="C06SLm0132E21.2  AC211087.2 htgs_phase:3 submitted_to_sgn_as:C06SLm0132E21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="41620" stop="42373"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41920" g_stop="42073" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="154" r_length="154" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0132E21.2" gen_strand="+" ref_id="SGN-E254565" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>154</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0132E21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E254565" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41920" e_stop="42073"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGTCTCTTCAAAGCCTAACAAGCCTTACTCATCACCAATTTCTTCTTCTCTTGAGCTCCCCTTTACTTCCCAGTTGCCATTTTCTAAAAAATATTCACTTTATTCCAATCATACCCTTCTCCAAACTCAATGCCGGAAAACCCAATCACCGGA</genome_strand>
        <mrna_strand>CAGTCTCTTCAAAGCCTAACAAGCCTTACTCATCACCAATTTCTTCTTCTCTTGAGCTCCCCTTTACTTCCCAGTTGCCATTTTCTAAAAAATATTCACTTTATTCCAATCATACCCTTCTCCAAACTCAATGCCGGAAAACCCAATCACCGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E249968" ref_strand="+" ref_description="SGN-E249968 [cLEG-4-E12]">
      <seq>cttcaaagcctaacaagccttactcatcaccaatttcttcttctcttgagctcccctttacttcccagttgccattttctaaaaaatattcactttattccaatcatacccttctccaaactcaatgccggaaaacccaatcaccggattgtcccagtttcttggttgtgggatctgcnaaaaagcaagaacctttgagggtaatgatatcgggagctcctgcttctggtaaaggaacgcaatgcgagctcattaccaagaagtacgatttggtgcatattgctgctggagatttattgagggctgaaattgctgcaagcactgaaaatgggaggagagcaaaggagtatatggataaagga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0132E21.2" temp_strand="+" temp_description="C06SLm0132E21.2  AC211087.2 htgs_phase:3 submitted_to_sgn_as:C06SLm0132E21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="41626" stop="43988"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41926" g_stop="42089" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="164" r_length="164" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42090" i_stop="42404" i_length="315">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42405" g_stop="42503" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="263" r_length="99" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42504" i_stop="43589" i_length="1086">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43590" g_stop="43688" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="362" r_length="99" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0132E21.2" gen_strand="+" ref_id="SGN-E249968" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>362</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0132E21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E249968" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41926" e_stop="42089"/>
          <exon e_start="42405" e_stop="42503"/>
          <exon e_start="43590" e_stop="43688"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCAAAGCCTAACAAGCCTTACTCATCACCAATTTCTTCTTCTCTTGAGCTCCCCTTTACTTCCCAGTTGCCATTTTCTAAAAAATATTCACTTTATTCCAATCATACCCTTCTCCAAACTCAATGCCGGAAAACCCAATCACCGGATTGTCCCAGTTTCTTGGTACGTCTTGCAATTCTTTTGACACCCTTTTGATTTTCACGTTCAATTTTGAGTTTAGAAAAGTGAGCCCAGAATTTGAAATTAGTAATAGGTTGTATTGAACATAAATGTATATTGAAGAGTTTTACTACGCAGCTGTTGGTTTACAATATATTTCATGCTCAATCGAATGAGATGACTTGAAAGAGTTAGACTTTAGTTTGGGACTGAGATGTAGTTGATTGATTGTTTTTTTGGTATGGCTTTGTGTAGTGGCTGAGTTTTAGCCAAAAAGGGAAACTTGATTAGTGATTGAATTGTATTTTTGTGATTTAGGTTGTGGGATCTGCGAAAAAGCAAGAACCTTTGAGGGTAATGATATCGGGAGCTCCTGCTTCTGGTAAAGGAACGCAATGCGAGCTCATTACCAAGAAGGTAATGGTTCTTTTTTTTTTCTTCATAGGGACAAGTTGGTTGTTATGATCTTTTATGTTTGAATTATCTTTATGCTGTTCTATGTAGGTTTCTCTTTTTGGAATGGATGATGATCCATTGGGATTTTGGTTTTATAATTCTGAATATGAAATCTCTATTCTTGAAAGTTTATCTACTAATATAAATCGTCCCAATTTCCACTAATATGTGTGTTATAGACCAGGTTGTACAATATAGAGGTATACTTCCATTCATGACTTCTGACCATGGGTGTTTCTAAATTTGAGGACCAGTTTTTTACCATATTACTGGTATCATTCTACCCAGGACCTCTTATGACTTGACCCTTACTCCATTTGGTTCGTAGACTGATAACACAAGAACTGGTATGTGGGGATTGTTATACACTGATTGACAATACCGGCATGGTTAATACCAGTATTAGCTATGCATGTTGTATATCTAGTATAAGTCACAGGGTGATACACCTCTTTTACCACAGCCTAAAAAAGCAGAATTATCAGATTTATCTGCACTCTTGTAAACTAAAATCATCATGTAAATTTGTCCAGTTATCAGATTTGTCTTGAAAAGCATCTTACTAGCATCTGTTCAGCTGTTCCATATATTTACGTTATTTCCTTAGCATAACATGTATGTCTCCTATGTGTATTCTCTTACAATTCACTGGTACCTTGTTCCCTAGCCTCTTTATCTTGTTTATTATGAATTCTCATCTGGTTCCTCTAAATTCTCATTGGTGGGTTTGTAATATTTCCTTCAGCCGAAATTGTCCATATTATAATCAACTTTATCTTAATTATTAGCAAGTCCCTGCTACTTGAACTCACATTCTTCACATTTCTTGATTGATTTAGCTTTAGTTTGATTTCCATGCTCCTTATTCCTTCCCTTGTTTAACATGTAGTTGTAAAAAGGTATGTTGCTAGTAGCATTTGATGTTCCATTTCAAAAAATGTCTCTAGTTGCAGTCGATGTTAGTTGCTACCTTAATTACCCATTTTCCTTGTTATGTATTACCCTGTGAGAAGTAATAAATTGAATACCGTGAGCTCATATATGCAGTACGATTTGGTGCATATTGCTGCTGGAGATTTATTGAGGGCTGAAATTGCTGCAGGCACTGAAAATGGGAGGAGAGCAAAGGAGTATATGGATAAAGGA</genome_strand>
        <mrna_strand>CTTCAAAGCCTAACAAGCCTTACTCATCACCAATTTCTTCTTCTCTTGAGCTCCCCTTTACTTCCCAGTTGCCATTTTCTAAAAAATATTCACTTTATTCCAATCATACCCTTCTCCAAACTCAATGCCGGAAAACCCAATCACCGGATTGTCCCAGTTTCTTG...........................................................................................................................................................................................................................................................................................................................GTTGTGGGATCTGCNAAAAAGCAAGAACCTTTGAGGGTAATGATATCGGGAGCTCCTGCTTCTGGTAAAGGAACGCAATGCGAGCTCATTACCAAGAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACGATTTGGTGCATATTGCTGCTGGAGATTTATTGAGGGCTGAAATTGCTGCAAGCACTGAAAATGGGAGGAGAGCAAAGGAGTATATGGATAAAGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E256065" ref_strand="+" ref_description="SGN-E256065 [cLEG-35-N18]">
      <seq>gtcaaagcctaacaagccttactcatcaccaatttcttcttctcttgagctcccctttacttcccagttgccattttctaaaaaatattcactttattccaatcataccccttctccaaactcaatgccggaaaacccaatcaccggattgtcccagtttcttggttgtgggatctgcgaaaaagcaagaacctttgagggtaatgatatcgggagctcctgcttctggtaaaggaacgcaatgcgagctcattaccaagaagtacgatttggtgcatattgctgctggagatttattgagggctgaaattgctgcaggcactgaaaatgggaggagagcaaaggagtatatggataaaggacaattggtaccaaacgagatagttgtaacgatggtcaaagagcggttgatgtgtccagactctcaagaaaagggttggcttttagatggatatcctcggagcttgtctcaagcagtagctctcaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0132E21.2" temp_strand="+" temp_description="C06SLm0132E21.2  AC211087.2 htgs_phase:3 submitted_to_sgn_as:C06SLm0132E21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="41628" stop="44231"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41927" g_stop="42089" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="164" r_length="164" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42090" i_stop="42404" i_length="315">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42405" g_stop="42503" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="263" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42504" i_stop="43589" i_length="1086">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43590" g_stop="43718" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="392" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43719" i_stop="43834" i_length="116">
            <donor d_prob="0.475" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43835" g_stop="43931" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="393" r_stop="489" r_length="97" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0132E21.2" gen_strand="+" ref_id="SGN-E256065" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>488</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0132E21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E256065" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41927" e_stop="42089"/>
          <exon e_start="42405" e_stop="42503"/>
          <exon e_start="43590" e_stop="43718"/>
          <exon e_start="43835" e_stop="43931"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAAAGCCTAACAAGCCTTACTCATCACCAATTTCTTCTTCTCTTGAGCTCCCCTTTACTTCCCAGTTGCCATTTTCTAAAAAATATTCACTTTATTCCAATCATA-CCCTTCTCCAAACTCAATGCCGGAAAACCCAATCACCGGATTGTCCCAGTTTCTTGGTACGTCTTGCAATTCTTTTGACACCCTTTTGATTTTCACGTTCAATTTTGAGTTTAGAAAAGTGAGCCCAGAATTTGAAATTAGTAATAGGTTGTATTGAACATAAATGTATATTGAAGAGTTTTACTACGCAGCTGTTGGTTTACAATATATTTCATGCTCAATCGAATGAGATGACTTGAAAGAGTTAGACTTTAGTTTGGGACTGAGATGTAGTTGATTGATTGTTTTTTTGGTATGGCTTTGTGTAGTGGCTGAGTTTTAGCCAAAAAGGGAAACTTGATTAGTGATTGAATTGTATTTTTGTGATTTAGGTTGTGGGATCTGCGAAAAAGCAAGAACCTTTGAGGGTAATGATATCGGGAGCTCCTGCTTCTGGTAAAGGAACGCAATGCGAGCTCATTACCAAGAAGGTAATGGTTCTTTTTTTTTTCTTCATAGGGACAAGTTGGTTGTTATGATCTTTTATGTTTGAATTATCTTTATGCTGTTCTATGTAGGTTTCTCTTTTTGGAATGGATGATGATCCATTGGGATTTTGGTTTTATAATTCTGAATATGAAATCTCTATTCTTGAAAGTTTATCTACTAATATAAATCGTCCCAATTTCCACTAATATGTGTGTTATAGACCAGGTTGTACAATATAGAGGTATACTTCCATTCATGACTTCTGACCATGGGTGTTTCTAAATTTGAGGACCAGTTTTTTACCATATTACTGGTATCATTCTACCCAGGACCTCTTATGACTTGACCCTTACTCCATTTGGTTCGTAGACTGATAACACAAGAACTGGTATGTGGGGATTGTTATACACTGATTGACAATACCGGCATGGTTAATACCAGTATTAGCTATGCATGTTGTATATCTAGTATAAGTCACAGGGTGATACACCTCTTTTACCACAGCCTAAAAAAGCAGAATTATCAGATTTATCTGCACTCTTGTAAACTAAAATCATCATGTAAATTTGTCCAGTTATCAGATTTGTCTTGAAAAGCATCTTACTAGCATCTGTTCAGCTGTTCCATATATTTACGTTATTTCCTTAGCATAACATGTATGTCTCCTATGTGTATTCTCTTACAATTCACTGGTACCTTGTTCCCTAGCCTCTTTATCTTGTTTATTATGAATTCTCATCTGGTTCCTCTAAATTCTCATTGGTGGGTTTGTAATATTTCCTTCAGCCGAAATTGTCCATATTATAATCAACTTTATCTTAATTATTAGCAAGTCCCTGCTACTTGAACTCACATTCTTCACATTTCTTGATTGATTTAGCTTTAGTTTGATTTCCATGCTCCTTATTCCTTCCCTTGTTTAACATGTAGTTGTAAAAAGGTATGTTGCTAGTAGCATTTGATGTTCCATTTCAAAAAATGTCTCTAGTTGCAGTCGATGTTAGTTGCTACCTTAATTACCCATTTTCCTTGTTATGTATTACCCTGTGAGAAGTAATAAATTGAATACCGTGAGCTCATATATGCAGTACGATTTGGTGCATATTGCTGCTGGAGATTTATTGAGGGCTGAAATTGCTGCAGGCACTGAAAATGGGAGGAGAGCAAAGGAGTATATGGATAAAGGACAATTGGTACCAAACGAGATAGTTGTAACGGTAGGTTTACCTGGCAAACTGGTTCCTGCTTTTGTTAGCATGCTATTTTAAAGGTTGAAAGAGATCATTAGAAAGAGTGTTTTATTCATATGTGATTTGTTGATTCCTTGTTTTAGATGGTCAAAGAGCGGTTGATGTGTCCAGACTCTCAAGAAAAGGGTTGGCTTTTAGATGGATATCCTCGGAGCTTGTCTCAAGCAGTAGCTCTCAAAG</genome_strand>
        <mrna_strand>GTCAAAGCCTAACAAGCCTTACTCATCACCAATTTCTTCTTCTCTTGAGCTCCCCTTTACTTCCCAGTTGCCATTTTCTAAAAAATATTCACTTTATTCCAATCATACCCCTTCTCCAAACTCAATGCCGGAAAACCCAATCACCGGATTGTCCCAGTTTCTTG...........................................................................................................................................................................................................................................................................................................................GTTGTGGGATCTGCGAAAAAGCAAGAACCTTTGAGGGTAATGATATCGGGAGCTCCTGCTTCTGGTAAAGGAACGCAATGCGAGCTCATTACCAAGAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACGATTTGGTGCATATTGCTGCTGGAGATTTATTGAGGGCTGAAATTGCTGCAGGCACTGAAAATGGGAGGAGAGCAAAGGAGTATATGGATAAAGGACAATTGGTACCAAACGAGATAGTTGTAACG....................................................................................................................ATGGTCAAAGAGCGGTTGATGTGTCCAGACTCTCAAGAAAAGGGTTGGCTTTTAGATGGATATCCTCGGAGCTTGTCTCAAGCAGTAGCTCTCAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E261015" ref_strand="+" ref_description="SGN-E261015 [cLEG-55-G16]">
      <seq>caaagcctaacaagccttactcatcaccaatttcttcttctcttgagctcccctttacttcccagttgccattttctaaaaaatattcactttattccaatcatacccttctccaaactcaatgccggaaaacccaatcaccggattgtcccagtttcttggttgtgggatctgcgaaaaagcaagaacctttgagggtaatgatatcgggagctcctgcttctggtaaaggaacgcaatgcgagctcattaccaagaagtacgatttggtgcatattgctgctggagatttattgagggctgaaattgctgcaggcactgaaaatgggaggagagcaaaggagtatatggataaaggacaattggtaccaaacgagatagttgtaacgatggtcaaagagcggttgatgtgtccagactctcaagaaaagggttggcttttagatggatatcctcggagcttgtctcaagcagtagctctcaaagagttccagccaaaccttttcattcttctggaagtacctgaagagatacttgttgagagagtggttggccgtagactagatcctgtaactgggagaatataccatttgaagtattctccgccagagaccgatgaaatcgctgcaaggcttacccagcgctttgatgatacagaagaaaaggtgaagctgcgtctgcacactcaccgtcaaaatgtggaatcagttctctcaatgtacaaagatactatattccaggtattctttttgccacgaatgtggtgcagttgcttcactcgggaatgcagattgaaacactcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0132E21.2" temp_strand="+" temp_description="C06SLm0132E21.2  AC211087.2 htgs_phase:3 submitted_to_sgn_as:C06SLm0132E21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="41629" stop="45541"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41929" g_stop="42089" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="161" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42090" i_stop="42404" i_length="315">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42405" g_stop="42503" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="260" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42504" i_stop="43589" i_length="1086">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43590" g_stop="43718" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="389" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43719" i_stop="43834" i_length="116">
            <donor d_prob="0.475" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43835" g_stop="43963" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="518" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="43964" i_stop="44564" i_length="601">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="44565" g_stop="44711" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="519" r_stop="665" r_length="147" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="44712" i_stop="45101" i_length="390">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="45102" g_stop="45241" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="666" r_stop="805" r_length="140" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0132E21.2" gen_strand="+" ref_id="SGN-E261015" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>805</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0132E21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E261015" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41929" e_stop="42089"/>
          <exon e_start="42405" e_stop="42503"/>
          <exon e_start="43590" e_stop="43718"/>
          <exon e_start="43835" e_stop="43963"/>
          <exon e_start="44565" e_stop="44711"/>
          <exon e_start="45102" e_stop="45241"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAGCCTAACAAGCCTTACTCATCACCAATTTCTTCTTCTCTTGAGCTCCCCTTTACTTCCCAGTTGCCATTTTCTAAAAAATATTCACTTTATTCCAATCATACCCTTCTCCAAACTCAATGCCGGAAAACCCAATCACCGGATTGTCCCAGTTTCTTGGTACGTCTTGCAATTCTTTTGACACCCTTTTGATTTTCACGTTCAATTTTGAGTTTAGAAAAGTGAGCCCAGAATTTGAAATTAGTAATAGGTTGTATTGAACATAAATGTATATTGAAGAGTTTTACTACGCAGCTGTTGGTTTACAATATATTTCATGCTCAATCGAATGAGATGACTTGAAAGAGTTAGACTTTAGTTTGGGACTGAGATGTAGTTGATTGATTGTTTTTTTGGTATGGCTTTGTGTAGTGGCTGAGTTTTAGCCAAAAAGGGAAACTTGATTAGTGATTGAATTGTATTTTTGTGATTTAGGTTGTGGGATCTGCGAAAAAGCAAGAACCTTTGAGGGTAATGATATCGGGAGCTCCTGCTTCTGGTAAAGGAACGCAATGCGAGCTCATTACCAAGAAGGTAATGGTTCTTTTTTTTTTCTTCATAGGGACAAGTTGGTTGTTATGATCTTTTATGTTTGAATTATCTTTATGCTGTTCTATGTAGGTTTCTCTTTTTGGAATGGATGATGATCCATTGGGATTTTGGTTTTATAATTCTGAATATGAAATCTCTATTCTTGAAAGTTTATCTACTAATATAAATCGTCCCAATTTCCACTAATATGTGTGTTATAGACCAGGTTGTACAATATAGAGGTATACTTCCATTCATGACTTCTGACCATGGGTGTTTCTAAATTTGAGGACCAGTTTTTTACCATATTACTGGTATCATTCTACCCAGGACCTCTTATGACTTGACCCTTACTCCATTTGGTTCGTAGACTGATAACACAAGAACTGGTATGTGGGGATTGTTATACACTGATTGACAATACCGGCATGGTTAATACCAGTATTAGCTATGCATGTTGTATATCTAGTATAAGTCACAGGGTGATACACCTCTTTTACCACAGCCTAAAAAAGCAGAATTATCAGATTTATCTGCACTCTTGTAAACTAAAATCATCATGTAAATTTGTCCAGTTATCAGATTTGTCTTGAAAAGCATCTTACTAGCATCTGTTCAGCTGTTCCATATATTTACGTTATTTCCTTAGCATAACATGTATGTCTCCTATGTGTATTCTCTTACAATTCACTGGTACCTTGTTCCCTAGCCTCTTTATCTTGTTTATTATGAATTCTCATCTGGTTCCTCTAAATTCTCATTGGTGGGTTTGTAATATTTCCTTCAGCCGAAATTGTCCATATTATAATCAACTTTATCTTAATTATTAGCAAGTCCCTGCTACTTGAACTCACATTCTTCACATTTCTTGATTGATTTAGCTTTAGTTTGATTTCCATGCTCCTTATTCCTTCCCTTGTTTAACATGTAGTTGTAAAAAGGTATGTTGCTAGTAGCATTTGATGTTCCATTTCAAAAAATGTCTCTAGTTGCAGTCGATGTTAGTTGCTACCTTAATTACCCATTTTCCTTGTTATGTATTACCCTGTGAGAAGTAATAAATTGAATACCGTGAGCTCATATATGCAGTACGATTTGGTGCATATTGCTGCTGGAGATTTATTGAGGGCTGAAATTGCTGCAGGCACTGAAAATGGGAGGAGAGCAAAGGAGTATATGGATAAAGGACAATTGGTACCAAACGAGATAGTTGTAACGGTAGGTTTACCTGGCAAACTGGTTCCTGCTTTTGTTAGCATGCTATTTTAAAGGTTGAAAGAGATCATTAGAAAGAGTGTTTTATTCATATGTGATTTGTTGATTCCTTGTTTTAGATGGTCAAAGAGCGGTTGATGTGTCCAGACTCTCAAGAAAAGGGTTGGCTTTTAGATGGATATCCTCGGAGCTTGTCTCAAGCAGTAGCTCTCAAAGAGTTCCAGCCAAACCTTTTCATTCTTCTGGAAGTGAGGTTCTGCTATTGATATCCTCTGATTGTGTTCTCAATCTCTTTCTAGTTAAAGCCTTAAGAGGATGAAAAGGATCAACATAGAGTATCCTGCATTTAAAATTTACCTGAAAAAATCTTTGAACGGGAAAACTGTGCTTTTGGTCTGTGAAAACCTAATTTTAGCCTTCAATTGAGAGAACTGTGCGCTTTTGGTTCCTCCTCTAGCATATTTCCCTACAAGAGTCAGATTACTTCCTTAAAATGCAAAAGAGTATCAAAATAACTTTCTTAGCATAAAAGGTGAATAGTTGTATGGTTTAATAGTTGTACTTTCATGGAATTTATCAGTTGAGGGACCAAAAGCTGATACTATCAGTTGGAGGTTTAGTGGGCTTGACTGAATACTGTGATTCGTTAGTACCAAGATTACAACTTACAAATAACCAAAAAAAAATTATTTTTTTCCTTATTTTAAATATGATTAGTTTTTTCTGATTCTTTTTTGTTTCACATGTCGTATATTAAACTGCAAGAGGTTTCAGAATAAATGCACCTTCATCGAGTCATCAACCAATGTTTTAACTTTTAACAGGAACACGTTATATTGTAAATGATAGGTACCTGAAGAGATACTTGTTGAGAGAGTGGTTGGCCGTAGACTAGATCCTGTAACTGGGAGAATATACCATTTGAAGTATTCTCCGCCAGAGACCGATGAAATCGCTGCAAGGCTTACCCAGCGCTTTGATGATACAGAAGAAAAGGCATGTTAATGCATGAATACGTACATTATTGTTGCTACAACTGCTGTAGGGCTTTTCCTTTTGTATGAAGCTTTTAAATCACGTAAACTTTTTTAATTCTTATTTGGTGGAAGCCTACCGTTTGTCCCATTGGTCATTTCTTGACCTTCTAATCAAACCATTTTAATCTATTCTCCTCCTGGAAATTTTGTTGCAGGTCTCGAAATTTCCATTTTCAACTAAATCTTTCTTTTAGCTATTTCCTTTATCATTCTTGCTGTCCTTTTCCCTTGCTTACTCAAGTCGCTTTGTAGATAACTGACTTAAGTATAGGTTTCTATAACATTATAAATAATGTTGTGTGATCAGCTTCATTTTTGTCTAATTTCTTTTTCAATTTACCGTTTACAGGTGAAGCTGCGTCTGCACACTCACCGTCAAAATGTGGAATCAGTTCTCTCAATGTACAAAGATACTATATTCCAGGTATTCTTTTTGCCACAGATGTGGTGCAGTTGCTTCACTCGGGAATGCAGATTGAAACACTCATC</genome_strand>
        <mrna_strand>CAAAGCCTAACAAGCCTTACTCATCACCAATTTCTTCTTCTCTTGAGCTCCCCTTTACTTCCCAGTTGCCATTTTCTAAAAAATATTCACTTTATTCCAATCATACCCTTCTCCAAACTCAATGCCGGAAAACCCAATCACCGGATTGTCCCAGTTTCTTG...........................................................................................................................................................................................................................................................................................................................GTTGTGGGATCTGCGAAAAAGCAAGAACCTTTGAGGGTAATGATATCGGGAGCTCCTGCTTCTGGTAAAGGAACGCAATGCGAGCTCATTACCAAGAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACGATTTGGTGCATATTGCTGCTGGAGATTTATTGAGGGCTGAAATTGCTGCAGGCACTGAAAATGGGAGGAGAGCAAAGGAGTATATGGATAAAGGACAATTGGTACCAAACGAGATAGTTGTAACG....................................................................................................................ATGGTCAAAGAGCGGTTGATGTGTCCAGACTCTCAAGAAAAGGGTTGGCTTTTAGATGGATATCCTCGGAGCTTGTCTCAAGCAGTAGCTCTCAAAGAGTTCCAGCCAAACCTTTTCATTCTTCTGGAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCTGAAGAGATACTTGTTGAGAGAGTGGTTGGCCGTAGACTAGATCCTGTAACTGGGAGAATATACCATTTGAAGTATTCTCCGCCAGAGACCGATGAAATCGCTGCAAGGCTTACCCAGCGCTTTGATGATACAGAAGAAAAG......................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGCTGCGTCTGCACACTCACCGTCAAAATGTGGAATCAGTTCTCTCAATGTACAAAGATACTATATTCCAGGTATTCTTTTTGCCACGAATGTGGTGCAGTTGCTTCACTCGGGAATGCAGATTGAAACACTCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E256112" ref_strand="+" ref_description="SGN-E256112 [cLEG-37-H13]">
      <seq>caaagcctaacaagccttactcatcaccaatttcttcttctcttgagctcccctttacttcccagttgccattttctaaaaaatattcactttattccaatcatacccttctccaaactcaatgccggaaaacccaatcaccggattgtcccagtttcttggttgtgggatctgcgaaaaagcaagaacctttgagggtaatgatatcgggagctcctgcttctggtaaaggaacgcaatgcgagctcattaccaagaagtacgatttggtgcatattgctgctggagatttattgagggctgaaattgctgcaggcactgaaaatgggaggagagcaaaggagtatatggataaaggacaattggtaccaaacgagatagttgtaacgatggtcaaagagcggttgatgtgtccagactctcaagaaaagggttggcttttagatggatatcctcggagcttgtctcaagcagtagctctcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0132E21.2" temp_strand="+" temp_description="C06SLm0132E21.2  AC211087.2 htgs_phase:3 submitted_to_sgn_as:C06SLm0132E21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="41629" stop="44229"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41929" g_stop="42089" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="161" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42090" i_stop="42404" i_length="315">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42405" g_stop="42503" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="260" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42504" i_stop="43589" i_length="1086">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43590" g_stop="43718" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="389" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43719" i_stop="43834" i_length="116">
            <donor d_prob="0.475" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43835" g_stop="43929" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="484" r_length="95" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0132E21.2" gen_strand="+" ref_id="SGN-E256112" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>484</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0132E21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E256112" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41929" e_stop="42089"/>
          <exon e_start="42405" e_stop="42503"/>
          <exon e_start="43590" e_stop="43718"/>
          <exon e_start="43835" e_stop="43929"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAGCCTAACAAGCCTTACTCATCACCAATTTCTTCTTCTCTTGAGCTCCCCTTTACTTCCCAGTTGCCATTTTCTAAAAAATATTCACTTTATTCCAATCATACCCTTCTCCAAACTCAATGCCGGAAAACCCAATCACCGGATTGTCCCAGTTTCTTGGTACGTCTTGCAATTCTTTTGACACCCTTTTGATTTTCACGTTCAATTTTGAGTTTAGAAAAGTGAGCCCAGAATTTGAAATTAGTAATAGGTTGTATTGAACATAAATGTATATTGAAGAGTTTTACTACGCAGCTGTTGGTTTACAATATATTTCATGCTCAATCGAATGAGATGACTTGAAAGAGTTAGACTTTAGTTTGGGACTGAGATGTAGTTGATTGATTGTTTTTTTGGTATGGCTTTGTGTAGTGGCTGAGTTTTAGCCAAAAAGGGAAACTTGATTAGTGATTGAATTGTATTTTTGTGATTTAGGTTGTGGGATCTGCGAAAAAGCAAGAACCTTTGAGGGTAATGATATCGGGAGCTCCTGCTTCTGGTAAAGGAACGCAATGCGAGCTCATTACCAAGAAGGTAATGGTTCTTTTTTTTTTCTTCATAGGGACAAGTTGGTTGTTATGATCTTTTATGTTTGAATTATCTTTATGCTGTTCTATGTAGGTTTCTCTTTTTGGAATGGATGATGATCCATTGGGATTTTGGTTTTATAATTCTGAATATGAAATCTCTATTCTTGAAAGTTTATCTACTAATATAAATCGTCCCAATTTCCACTAATATGTGTGTTATAGACCAGGTTGTACAATATAGAGGTATACTTCCATTCATGACTTCTGACCATGGGTGTTTCTAAATTTGAGGACCAGTTTTTTACCATATTACTGGTATCATTCTACCCAGGACCTCTTATGACTTGACCCTTACTCCATTTGGTTCGTAGACTGATAACACAAGAACTGGTATGTGGGGATTGTTATACACTGATTGACAATACCGGCATGGTTAATACCAGTATTAGCTATGCATGTTGTATATCTAGTATAAGTCACAGGGTGATACACCTCTTTTACCACAGCCTAAAAAAGCAGAATTATCAGATTTATCTGCACTCTTGTAAACTAAAATCATCATGTAAATTTGTCCAGTTATCAGATTTGTCTTGAAAAGCATCTTACTAGCATCTGTTCAGCTGTTCCATATATTTACGTTATTTCCTTAGCATAACATGTATGTCTCCTATGTGTATTCTCTTACAATTCACTGGTACCTTGTTCCCTAGCCTCTTTATCTTGTTTATTATGAATTCTCATCTGGTTCCTCTAAATTCTCATTGGTGGGTTTGTAATATTTCCTTCAGCCGAAATTGTCCATATTATAATCAACTTTATCTTAATTATTAGCAAGTCCCTGCTACTTGAACTCACATTCTTCACATTTCTTGATTGATTTAGCTTTAGTTTGATTTCCATGCTCCTTATTCCTTCCCTTGTTTAACATGTAGTTGTAAAAAGGTATGTTGCTAGTAGCATTTGATGTTCCATTTCAAAAAATGTCTCTAGTTGCAGTCGATGTTAGTTGCTACCTTAATTACCCATTTTCCTTGTTATGTATTACCCTGTGAGAAGTAATAAATTGAATACCGTGAGCTCATATATGCAGTACGATTTGGTGCATATTGCTGCTGGAGATTTATTGAGGGCTGAAATTGCTGCAGGCACTGAAAATGGGAGGAGAGCAAAGGAGTATATGGATAAAGGACAATTGGTACCAAACGAGATAGTTGTAACGGTAGGTTTACCTGGCAAACTGGTTCCTGCTTTTGTTAGCATGCTATTTTAAAGGTTGAAAGAGATCATTAGAAAGAGTGTTTTATTCATATGTGATTTGTTGATTCCTTGTTTTAGATGGTCAAAGAGCGGTTGATGTGTCCAGACTCTCAAGAAAAGGGTTGGCTTTTAGATGGATATCCTCGGAGCTTGTCTCAAGCAGTAGCTCTCAA</genome_strand>
        <mrna_strand>CAAAGCCTAACAAGCCTTACTCATCACCAATTTCTTCTTCTCTTGAGCTCCCCTTTACTTCCCAGTTGCCATTTTCTAAAAAATATTCACTTTATTCCAATCATACCCTTCTCCAAACTCAATGCCGGAAAACCCAATCACCGGATTGTCCCAGTTTCTTG...........................................................................................................................................................................................................................................................................................................................GTTGTGGGATCTGCGAAAAAGCAAGAACCTTTGAGGGTAATGATATCGGGAGCTCCTGCTTCTGGTAAAGGAACGCAATGCGAGCTCATTACCAAGAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACGATTTGGTGCATATTGCTGCTGGAGATTTATTGAGGGCTGAAATTGCTGCAGGCACTGAAAATGGGAGGAGAGCAAAGGAGTATATGGATAAAGGACAATTGGTACCAAACGAGATAGTTGTAACG....................................................................................................................ATGGTCAAAGAGCGGTTGATGTGTCCAGACTCTCAAGAAAAGGGTTGGCTTTTAGATGGATATCCTCGGAGCTTGTCTCAAGCAGTAGCTCTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E271659" ref_strand="+" ref_description="SGN-E271659 [cLEM-23-C16]">
      <seq>aatttcttcttctcttgagctcccctttacttgccaggtgccattttctaaaaaatattcactttattccaatcatacccttctccaaactcaatgccggaaaacccaatcaccggattgtcccactttcttggttgtgggatctgcgaaaaagcaagaacctttgagggtaatgatatcgggagctcctgcttctggtaaaggaacgcaatgcgagctcattaccaagaagtacgatttggtgcatattgctgctggagatttattgagggctgaaattgctgcaggcactgaaaatgggaggagagcaaaggagtatatggataaaggacaattggtaccaaacgagatagttgtaacgatggtcaaagagcggttgatgtgtccagactctcaagaaaagggttggcttttagatggatatcctcggagcttgtctcaagcagtagctctcaaagagttccagccaaaccttttcattcttctggaagtacctgaagagatacttgttgagagagtggttggccgaatactagatcctgtaactgggagaatataccatttgaagtattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0132E21.2" temp_strand="+" temp_description="C06SLm0132E21.2  AC211087.2 htgs_phase:3 submitted_to_sgn_as:C06SLm0132E21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="41657" stop="44948"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41957" g_stop="42089" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="133" r_length="133" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42090" i_stop="42404" i_length="315">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42405" g_stop="42503" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="232" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42504" i_stop="43589" i_length="1086">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43590" g_stop="43718" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="361" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43719" i_stop="43834" i_length="116">
            <donor d_prob="0.475" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43835" g_stop="43963" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="490" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="43964" i_stop="44564" i_length="601">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="44565" g_stop="44648" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="491" r_stop="574" r_length="84" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0132E21.2" gen_strand="+" ref_id="SGN-E271659" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>574</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0132E21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E271659" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41957" e_stop="42089"/>
          <exon e_start="42405" e_stop="42503"/>
          <exon e_start="43590" e_stop="43718"/>
          <exon e_start="43835" e_stop="43963"/>
          <exon e_start="44565" e_stop="44648"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTCTTCTTCTCTTGAGCTCCCCTTTACTTCCCAGTTGCCATTTTCTAAAAAATATTCACTTTATTCCAATCATACCCTTCTCCAAACTCAATGCCGGAAAACCCAATCACCGGATTGTCCCAGTTTCTTGGTACGTCTTGCAATTCTTTTGACACCCTTTTGATTTTCACGTTCAATTTTGAGTTTAGAAAAGTGAGCCCAGAATTTGAAATTAGTAATAGGTTGTATTGAACATAAATGTATATTGAAGAGTTTTACTACGCAGCTGTTGGTTTACAATATATTTCATGCTCAATCGAATGAGATGACTTGAAAGAGTTAGACTTTAGTTTGGGACTGAGATGTAGTTGATTGATTGTTTTTTTGGTATGGCTTTGTGTAGTGGCTGAGTTTTAGCCAAAAAGGGAAACTTGATTAGTGATTGAATTGTATTTTTGTGATTTAGGTTGTGGGATCTGCGAAAAAGCAAGAACCTTTGAGGGTAATGATATCGGGAGCTCCTGCTTCTGGTAAAGGAACGCAATGCGAGCTCATTACCAAGAAGGTAATGGTTCTTTTTTTTTTCTTCATAGGGACAAGTTGGTTGTTATGATCTTTTATGTTTGAATTATCTTTATGCTGTTCTATGTAGGTTTCTCTTTTTGGAATGGATGATGATCCATTGGGATTTTGGTTTTATAATTCTGAATATGAAATCTCTATTCTTGAAAGTTTATCTACTAATATAAATCGTCCCAATTTCCACTAATATGTGTGTTATAGACCAGGTTGTACAATATAGAGGTATACTTCCATTCATGACTTCTGACCATGGGTGTTTCTAAATTTGAGGACCAGTTTTTTACCATATTACTGGTATCATTCTACCCAGGACCTCTTATGACTTGACCCTTACTCCATTTGGTTCGTAGACTGATAACACAAGAACTGGTATGTGGGGATTGTTATACACTGATTGACAATACCGGCATGGTTAATACCAGTATTAGCTATGCATGTTGTATATCTAGTATAAGTCACAGGGTGATACACCTCTTTTACCACAGCCTAAAAAAGCAGAATTATCAGATTTATCTGCACTCTTGTAAACTAAAATCATCATGTAAATTTGTCCAGTTATCAGATTTGTCTTGAAAAGCATCTTACTAGCATCTGTTCAGCTGTTCCATATATTTACGTTATTTCCTTAGCATAACATGTATGTCTCCTATGTGTATTCTCTTACAATTCACTGGTACCTTGTTCCCTAGCCTCTTTATCTTGTTTATTATGAATTCTCATCTGGTTCCTCTAAATTCTCATTGGTGGGTTTGTAATATTTCCTTCAGCCGAAATTGTCCATATTATAATCAACTTTATCTTAATTATTAGCAAGTCCCTGCTACTTGAACTCACATTCTTCACATTTCTTGATTGATTTAGCTTTAGTTTGATTTCCATGCTCCTTATTCCTTCCCTTGTTTAACATGTAGTTGTAAAAAGGTATGTTGCTAGTAGCATTTGATGTTCCATTTCAAAAAATGTCTCTAGTTGCAGTCGATGTTAGTTGCTACCTTAATTACCCATTTTCCTTGTTATGTATTACCCTGTGAGAAGTAATAAATTGAATACCGTGAGCTCATATATGCAGTACGATTTGGTGCATATTGCTGCTGGAGATTTATTGAGGGCTGAAATTGCTGCAGGCACTGAAAATGGGAGGAGAGCAAAGGAGTATATGGATAAAGGACAATTGGTACCAAACGAGATAGTTGTAACGGTAGGTTTACCTGGCAAACTGGTTCCTGCTTTTGTTAGCATGCTATTTTAAAGGTTGAAAGAGATCATTAGAAAGAGTGTTTTATTCATATGTGATTTGTTGATTCCTTGTTTTAGATGGTCAAAGAGCGGTTGATGTGTCCAGACTCTCAAGAAAAGGGTTGGCTTTTAGATGGATATCCTCGGAGCTTGTCTCAAGCAGTAGCTCTCAAAGAGTTCCAGCCAAACCTTTTCATTCTTCTGGAAGTGAGGTTCTGCTATTGATATCCTCTGATTGTGTTCTCAATCTCTTTCTAGTTAAAGCCTTAAGAGGATGAAAAGGATCAACATAGAGTATCCTGCATTTAAAATTTACCTGAAAAAATCTTTGAACGGGAAAACTGTGCTTTTGGTCTGTGAAAACCTAATTTTAGCCTTCAATTGAGAGAACTGTGCGCTTTTGGTTCCTCCTCTAGCATATTTCCCTACAAGAGTCAGATTACTTCCTTAAAATGCAAAAGAGTATCAAAATAACTTTCTTAGCATAAAAGGTGAATAGTTGTATGGTTTAATAGTTGTACTTTCATGGAATTTATCAGTTGAGGGACCAAAAGCTGATACTATCAGTTGGAGGTTTAGTGGGCTTGACTGAATACTGTGATTCGTTAGTACCAAGATTACAACTTACAAATAACCAAAAAAAAATTATTTTTTTCCTTATTTTAAATATGATTAGTTTTTTCTGATTCTTTTTTGTTTCACATGTCGTATATTAAACTGCAAGAGGTTTCAGAATAAATGCACCTTCATCGAGTCATCAACCAATGTTTTAACTTTTAACAGGAACACGTTATATTGTAAATGATAGGTACCTGAAGAGATACTTGTTGAGAGAGTGGTTGGCCGTAGACTAGATCCTGTAACTGGGAGAATATACCATTTGAAGTATTCT</genome_strand>
        <mrna_strand>AATTTCTTCTTCTCTTGAGCTCCCCTTTACTTGCCAGGTGCCATTTTCTAAAAAATATTCACTTTATTCCAATCATACCCTTCTCCAAACTCAATGCCGGAAAACCCAATCACCGGATTGTCCCACTTTCTTG...........................................................................................................................................................................................................................................................................................................................GTTGTGGGATCTGCGAAAAAGCAAGAACCTTTGAGGGTAATGATATCGGGAGCTCCTGCTTCTGGTAAAGGAACGCAATGCGAGCTCATTACCAAGAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACGATTTGGTGCATATTGCTGCTGGAGATTTATTGAGGGCTGAAATTGCTGCAGGCACTGAAAATGGGAGGAGAGCAAAGGAGTATATGGATAAAGGACAATTGGTACCAAACGAGATAGTTGTAACG....................................................................................................................ATGGTCAAAGAGCGGTTGATGTGTCCAGACTCTCAAGAAAAGGGTTGGCTTTTAGATGGATATCCTCGGAGCTTGTCTCAAGCAGTAGCTCTCAAAGAGTTCCAGCCAAACCTTTTCATTCTTCTGGAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCTGAAGAGATACTTGTTGAGAGAGTGGTTGGCCGAATACTAGATCCTGTAACTGGGAGAATATACCATTTGAAGTATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E260683" ref_strand="+" ref_description="SGN-E260683 [cLEG-54-M16]">
      <seq>tcttcttctcttgagctcccctttacttcccagttgccattttctaaaaaatattcactttattccaatcatacccttctccaaactcaatgccggaaaacccaatcaccggattgtcccagtttcttggttgtgggatctgcgaaaaagcaagaacctttgagggtaatgatatcgggagctcctgcttctggtaaaggaacgcaatgcgagctcattaccaagaagtacgatttggtgcatattgctgctggagatttattgagggctgaaattgctgcaggcactgaaaatgggaggagagcaaaggagtatatggataaaggacaattggtaccaaacgagatagttgtaacgatggtcaaagagcggttgatgtgtccagactctcaagaaaagggttggcttttagatggatatcctcggagcttgtctcaagcagtagctctcaaagagttccagccaaaccttttcattcttctggaagtacctgaagagatacttgttgagagagtggttggccgtagactagatcctgtaactgggagaatataccatttgaagtattctccgccagagaccgatgaaatcgctgcaaggcttacccagcgctttgatgatacagaagaaaaggtgaagctgcgtctgcacactcaccgtcaaaatgtggaatcagttctctcaatgtacaaagatactatattccaggtggacgggagcgtttccaaagaggaagtatttgctcnaattgatggtgcattaactcaacttcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0132E21.2" temp_strand="+" temp_description="C06SLm0132E21.2  AC211087.2 htgs_phase:3 submitted_to_sgn_as:C06SLm0132E21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="41661" stop="46155"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41961" g_stop="42089" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="129" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42090" i_stop="42404" i_length="315">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42405" g_stop="42503" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="228" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42504" i_stop="43589" i_length="1086">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43590" g_stop="43718" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="357" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43719" i_stop="43834" i_length="116">
            <donor d_prob="0.475" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43835" g_stop="43963" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="486" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="43964" i_stop="44564" i_length="601">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="44565" g_stop="44711" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="487" r_stop="633" r_length="147" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="44712" i_stop="45101" i_length="390">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="45102" g_stop="45176" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="634" r_stop="708" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="45177" i_stop="45788" i_length="612">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="45789" g_stop="45855" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="709" r_stop="775" r_length="67" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0132E21.2" gen_strand="+" ref_id="SGN-E260683" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>775</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0132E21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E260683" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41961" e_stop="42089"/>
          <exon e_start="42405" e_stop="42503"/>
          <exon e_start="43590" e_stop="43718"/>
          <exon e_start="43835" e_stop="43963"/>
          <exon e_start="44565" e_stop="44711"/>
          <exon e_start="45102" e_stop="45176"/>
          <exon e_start="45789" e_stop="45855"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCTTCTCTTGAGCTCCCCTTTACTTCCCAGTTGCCATTTTCTAAAAAATATTCACTTTATTCCAATCATACCCTTCTCCAAACTCAATGCCGGAAAACCCAATCACCGGATTGTCCCAGTTTCTTGGTACGTCTTGCAATTCTTTTGACACCCTTTTGATTTTCACGTTCAATTTTGAGTTTAGAAAAGTGAGCCCAGAATTTGAAATTAGTAATAGGTTGTATTGAACATAAATGTATATTGAAGAGTTTTACTACGCAGCTGTTGGTTTACAATATATTTCATGCTCAATCGAATGAGATGACTTGAAAGAGTTAGACTTTAGTTTGGGACTGAGATGTAGTTGATTGATTGTTTTTTTGGTATGGCTTTGTGTAGTGGCTGAGTTTTAGCCAAAAAGGGAAACTTGATTAGTGATTGAATTGTATTTTTGTGATTTAGGTTGTGGGATCTGCGAAAAAGCAAGAACCTTTGAGGGTAATGATATCGGGAGCTCCTGCTTCTGGTAAAGGAACGCAATGCGAGCTCATTACCAAGAAGGTAATGGTTCTTTTTTTTTTCTTCATAGGGACAAGTTGGTTGTTATGATCTTTTATGTTTGAATTATCTTTATGCTGTTCTATGTAGGTTTCTCTTTTTGGAATGGATGATGATCCATTGGGATTTTGGTTTTATAATTCTGAATATGAAATCTCTATTCTTGAAAGTTTATCTACTAATATAAATCGTCCCAATTTCCACTAATATGTGTGTTATAGACCAGGTTGTACAATATAGAGGTATACTTCCATTCATGACTTCTGACCATGGGTGTTTCTAAATTTGAGGACCAGTTTTTTACCATATTACTGGTATCATTCTACCCAGGACCTCTTATGACTTGACCCTTACTCCATTTGGTTCGTAGACTGATAACACAAGAACTGGTATGTGGGGATTGTTATACACTGATTGACAATACCGGCATGGTTAATACCAGTATTAGCTATGCATGTTGTATATCTAGTATAAGTCACAGGGTGATACACCTCTTTTACCACAGCCTAAAAAAGCAGAATTATCAGATTTATCTGCACTCTTGTAAACTAAAATCATCATGTAAATTTGTCCAGTTATCAGATTTGTCTTGAAAAGCATCTTACTAGCATCTGTTCAGCTGTTCCATATATTTACGTTATTTCCTTAGCATAACATGTATGTCTCCTATGTGTATTCTCTTACAATTCACTGGTACCTTGTTCCCTAGCCTCTTTATCTTGTTTATTATGAATTCTCATCTGGTTCCTCTAAATTCTCATTGGTGGGTTTGTAATATTTCCTTCAGCCGAAATTGTCCATATTATAATCAACTTTATCTTAATTATTAGCAAGTCCCTGCTACTTGAACTCACATTCTTCACATTTCTTGATTGATTTAGCTTTAGTTTGATTTCCATGCTCCTTATTCCTTCCCTTGTTTAACATGTAGTTGTAAAAAGGTATGTTGCTAGTAGCATTTGATGTTCCATTTCAAAAAATGTCTCTAGTTGCAGTCGATGTTAGTTGCTACCTTAATTACCCATTTTCCTTGTTATGTATTACCCTGTGAGAAGTAATAAATTGAATACCGTGAGCTCATATATGCAGTACGATTTGGTGCATATTGCTGCTGGAGATTTATTGAGGGCTGAAATTGCTGCAGGCACTGAAAATGGGAGGAGAGCAAAGGAGTATATGGATAAAGGACAATTGGTACCAAACGAGATAGTTGTAACGGTAGGTTTACCTGGCAAACTGGTTCCTGCTTTTGTTAGCATGCTATTTTAAAGGTTGAAAGAGATCATTAGAAAGAGTGTTTTATTCATATGTGATTTGTTGATTCCTTGTTTTAGATGGTCAAAGAGCGGTTGATGTGTCCAGACTCTCAAGAAAAGGGTTGGCTTTTAGATGGATATCCTCGGAGCTTGTCTCAAGCAGTAGCTCTCAAAGAGTTCCAGCCAAACCTTTTCATTCTTCTGGAAGTGAGGTTCTGCTATTGATATCCTCTGATTGTGTTCTCAATCTCTTTCTAGTTAAAGCCTTAAGAGGATGAAAAGGATCAACATAGAGTATCCTGCATTTAAAATTTACCTGAAAAAATCTTTGAACGGGAAAACTGTGCTTTTGGTCTGTGAAAACCTAATTTTAGCCTTCAATTGAGAGAACTGTGCGCTTTTGGTTCCTCCTCTAGCATATTTCCCTACAAGAGTCAGATTACTTCCTTAAAATGCAAAAGAGTATCAAAATAACTTTCTTAGCATAAAAGGTGAATAGTTGTATGGTTTAATAGTTGTACTTTCATGGAATTTATCAGTTGAGGGACCAAAAGCTGATACTATCAGTTGGAGGTTTAGTGGGCTTGACTGAATACTGTGATTCGTTAGTACCAAGATTACAACTTACAAATAACCAAAAAAAAATTATTTTTTTCCTTATTTTAAATATGATTAGTTTTTTCTGATTCTTTTTTGTTTCACATGTCGTATATTAAACTGCAAGAGGTTTCAGAATAAATGCACCTTCATCGAGTCATCAACCAATGTTTTAACTTTTAACAGGAACACGTTATATTGTAAATGATAGGTACCTGAAGAGATACTTGTTGAGAGAGTGGTTGGCCGTAGACTAGATCCTGTAACTGGGAGAATATACCATTTGAAGTATTCTCCGCCAGAGACCGATGAAATCGCTGCAAGGCTTACCCAGCGCTTTGATGATACAGAAGAAAAGGCATGTTAATGCATGAATACGTACATTATTGTTGCTACAACTGCTGTAGGGCTTTTCCTTTTGTATGAAGCTTTTAAATCACGTAAACTTTTTTAATTCTTATTTGGTGGAAGCCTACCGTTTGTCCCATTGGTCATTTCTTGACCTTCTAATCAAACCATTTTAATCTATTCTCCTCCTGGAAATTTTGTTGCAGGTCTCGAAATTTCCATTTTCAACTAAATCTTTCTTTTAGCTATTTCCTTTATCATTCTTGCTGTCCTTTTCCCTTGCTTACTCAAGTCGCTTTGTAGATAACTGACTTAAGTATAGGTTTCTATAACATTATAAATAATGTTGTGTGATCAGCTTCATTTTTGTCTAATTTCTTTTTCAATTTACCGTTTACAGGTGAAGCTGCGTCTGCACACTCACCGTCAAAATGTGGAATCAGTTCTCTCAATGTACAAAGATACTATATTCCAGGTATTCTTTTTGCCACAGATGTGGTGCAGTTGCTTCACTCGGGAATGCAGATTGAAACACTCATCAGTCACCATCAAAGTGTGGAATCATTCCTTATATACTTGATTCATAGTTTATTGGGTTGTTTGATGGTTTACAAGGTCTTGGTTAACAGGAATATAGTCCATAAAAGACAATGTGGAAGGGACTCGGTGGAAATGGTTCGATGAGAAAGTAGTTTGGTTTTCTATTTGGCAAAAGAACAATGATATGGTTATAAAATTTCGTTGTTTGACATGTAGGTTACAAAATGATTACTTTAAATTATCTTCAGTTCATCCAGGTCATCCTTCCTCATAACAGTTGTAAAACAAAGGAAAGCCAAAGCAAAAGGGCTATACATCCTCTTTTATCTTAAAATTTACTCAATAAGCTAAAGGAAGAGTAAATCCTTTTGAGTATTACATTCATACTAATCAATCTGGGGGGAAATATACTTAATCAAGGACTCCCCTTCCCTCTTCAATGAACAAGGATACTGTATGTTCTTTCTTTCCATACGCGTGCATGATCGTGTTGTTATCATTTCCTGGTGTTAAAACTTCCATCTTCTCTGAGCTATTTTAATTTCAGGTGGACGGGAGCGTTTCCAAAGAGGAAGTATTTGCTCAAATTGATGGTGCATTAACTCAACTTCTTG</genome_strand>
        <mrna_strand>TCTTCTTCTCTTGAGCTCCCCTTTACTTCCCAGTTGCCATTTTCTAAAAAATATTCACTTTATTCCAATCATACCCTTCTCCAAACTCAATGCCGGAAAACCCAATCACCGGATTGTCCCAGTTTCTTG...........................................................................................................................................................................................................................................................................................................................GTTGTGGGATCTGCGAAAAAGCAAGAACCTTTGAGGGTAATGATATCGGGAGCTCCTGCTTCTGGTAAAGGAACGCAATGCGAGCTCATTACCAAGAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACGATTTGGTGCATATTGCTGCTGGAGATTTATTGAGGGCTGAAATTGCTGCAGGCACTGAAAATGGGAGGAGAGCAAAGGAGTATATGGATAAAGGACAATTGGTACCAAACGAGATAGTTGTAACG....................................................................................................................ATGGTCAAAGAGCGGTTGATGTGTCCAGACTCTCAAGAAAAGGGTTGGCTTTTAGATGGATATCCTCGGAGCTTGTCTCAAGCAGTAGCTCTCAAAGAGTTCCAGCCAAACCTTTTCATTCTTCTGGAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCTGAAGAGATACTTGTTGAGAGAGTGGTTGGCCGTAGACTAGATCCTGTAACTGGGAGAATATACCATTTGAAGTATTCTCCGCCAGAGACCGATGAAATCGCTGCAAGGCTTACCCAGCGCTTTGATGATACAGAAGAAAAG......................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGCTGCGTCTGCACACTCACCGTCAAAATGTGGAATCAGTTCTCTCAATGTACAAAGATACTATATTCCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGACGGGAGCGTTTCCAAAGAGGAAGTATTTGCTCNAATTGATGGTGCATTAACTCAACTTCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E301568" ref_strand="+" ref_description="SGN-E301568 [cLEW-23-J21]">
      <seq>tcttcttctcttgagctccccgggactttccagttgccattgtctaaaaaatattcactttattccaatcatacccttctccaaactcaatgccggaaaacccaatcaccggattgtcccagtttcttggttgtgggatctgcgaaaaagcaagaacctttgagggtaatgatatcgggagctcctgcttctggtaaaggaacgcaatgcgagctcattaccaagaagtgcgatttggtgcatattgctgctggagatttattgagggctgaaattgctgcaggcactgaaaatgggaggagagcaaaggagtatatggataaaggacaattggtaccaaacgagatagttgtaacgatggtcaaagagcggttgatgtgtccagactctcaagaaaagggttggctttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0132E21.2" temp_strand="+" temp_description="C06SLm0132E21.2  AC211087.2 htgs_phase:3 submitted_to_sgn_as:C06SLm0132E21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="41661" stop="44188"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41961" g_stop="42089" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="129" r_length="129" r_score="0.961"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42090" i_stop="42404" i_length="315">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42405" g_stop="42503" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="228" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42504" i_stop="43589" i_length="1086">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43590" g_stop="43718" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="357" r_length="129" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43719" i_stop="43834" i_length="116">
            <donor d_prob="0.475" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43835" g_stop="43888" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="411" r_length="54" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0132E21.2" gen_strand="+" ref_id="SGN-E301568" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>411</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0132E21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E301568" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41961" e_stop="42089"/>
          <exon e_start="42405" e_stop="42503"/>
          <exon e_start="43590" e_stop="43718"/>
          <exon e_start="43835" e_stop="43888"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCTTCTCTTGAGCTCCCCTTTACTTCCCAGTTGCCATTTTCTAAAAAATATTCACTTTATTCCAATCATACCCTTCTCCAAACTCAATGCCGGAAAACCCAATCACCGGATTGTCCCAGTTTCTTGGTACGTCTTGCAATTCTTTTGACACCCTTTTGATTTTCACGTTCAATTTTGAGTTTAGAAAAGTGAGCCCAGAATTTGAAATTAGTAATAGGTTGTATTGAACATAAATGTATATTGAAGAGTTTTACTACGCAGCTGTTGGTTTACAATATATTTCATGCTCAATCGAATGAGATGACTTGAAAGAGTTAGACTTTAGTTTGGGACTGAGATGTAGTTGATTGATTGTTTTTTTGGTATGGCTTTGTGTAGTGGCTGAGTTTTAGCCAAAAAGGGAAACTTGATTAGTGATTGAATTGTATTTTTGTGATTTAGGTTGTGGGATCTGCGAAAAAGCAAGAACCTTTGAGGGTAATGATATCGGGAGCTCCTGCTTCTGGTAAAGGAACGCAATGCGAGCTCATTACCAAGAAGGTAATGGTTCTTTTTTTTTTCTTCATAGGGACAAGTTGGTTGTTATGATCTTTTATGTTTGAATTATCTTTATGCTGTTCTATGTAGGTTTCTCTTTTTGGAATGGATGATGATCCATTGGGATTTTGGTTTTATAATTCTGAATATGAAATCTCTATTCTTGAAAGTTTATCTACTAATATAAATCGTCCCAATTTCCACTAATATGTGTGTTATAGACCAGGTTGTACAATATAGAGGTATACTTCCATTCATGACTTCTGACCATGGGTGTTTCTAAATTTGAGGACCAGTTTTTTACCATATTACTGGTATCATTCTACCCAGGACCTCTTATGACTTGACCCTTACTCCATTTGGTTCGTAGACTGATAACACAAGAACTGGTATGTGGGGATTGTTATACACTGATTGACAATACCGGCATGGTTAATACCAGTATTAGCTATGCATGTTGTATATCTAGTATAAGTCACAGGGTGATACACCTCTTTTACCACAGCCTAAAAAAGCAGAATTATCAGATTTATCTGCACTCTTGTAAACTAAAATCATCATGTAAATTTGTCCAGTTATCAGATTTGTCTTGAAAAGCATCTTACTAGCATCTGTTCAGCTGTTCCATATATTTACGTTATTTCCTTAGCATAACATGTATGTCTCCTATGTGTATTCTCTTACAATTCACTGGTACCTTGTTCCCTAGCCTCTTTATCTTGTTTATTATGAATTCTCATCTGGTTCCTCTAAATTCTCATTGGTGGGTTTGTAATATTTCCTTCAGCCGAAATTGTCCATATTATAATCAACTTTATCTTAATTATTAGCAAGTCCCTGCTACTTGAACTCACATTCTTCACATTTCTTGATTGATTTAGCTTTAGTTTGATTTCCATGCTCCTTATTCCTTCCCTTGTTTAACATGTAGTTGTAAAAAGGTATGTTGCTAGTAGCATTTGATGTTCCATTTCAAAAAATGTCTCTAGTTGCAGTCGATGTTAGTTGCTACCTTAATTACCCATTTTCCTTGTTATGTATTACCCTGTGAGAAGTAATAAATTGAATACCGTGAGCTCATATATGCAGTACGATTTGGTGCATATTGCTGCTGGAGATTTATTGAGGGCTGAAATTGCTGCAGGCACTGAAAATGGGAGGAGAGCAAAGGAGTATATGGATAAAGGACAATTGGTACCAAACGAGATAGTTGTAACGGTAGGTTTACCTGGCAAACTGGTTCCTGCTTTTGTTAGCATGCTATTTTAAAGGTTGAAAGAGATCATTAGAAAGAGTGTTTTATTCATATGTGATTTGTTGATTCCTTGTTTTAGATGGTCAAAGAGCGGTTGATGTGTCCAGACTCTCAAGAAAAGGGTTGGCTTTTA</genome_strand>
        <mrna_strand>TCTTCTTCTCTTGAGCTCCCCGGGACTTTCCAGTTGCCATTGTCTAAAAAATATTCACTTTATTCCAATCATACCCTTCTCCAAACTCAATGCCGGAAAACCCAATCACCGGATTGTCCCAGTTTCTTG...........................................................................................................................................................................................................................................................................................................................GTTGTGGGATCTGCGAAAAAGCAAGAACCTTTGAGGGTAATGATATCGGGAGCTCCTGCTTCTGGTAAAGGAACGCAATGCGAGCTCATTACCAAGAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCGATTTGGTGCATATTGCTGCTGGAGATTTATTGAGGGCTGAAATTGCTGCAGGCACTGAAAATGGGAGGAGAGCAAAGGAGTATATGGATAAAGGACAATTGGTACCAAACGAGATAGTTGTAACG....................................................................................................................ATGGTCAAAGAGCGGTTGATGTGTCCAGACTCTCAAGAAAAGGGTTGGCTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E283973" ref_strand="+" ref_description="SGN-E283973 [cLER-13-B14]">
      <seq>tggttgtgggatctgcgaaaaagcaagaacctttgagggtaatgatatcgggagctcctgcttctggtaaaggaacgcaatgcgagctcattaccaagaagtacgatttggtgcatattgctgctggagatttattgagggctgaaattgctgcaggcactgaaaatgggaggagagcaaaggagtatatggataaaggacaattggtaccaaacgagatagttgtaacgatggtcaaagagcggttgatgtgtccagactctcaagaaaagggttggcttttagatggatatcctcggagcttgtctcaagcagtagctctcaaagagttccagccaaaccttttcattcttctggaagtacctgaagagatactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0132E21.2" temp_strand="+" temp_description="C06SLm0132E21.2  AC211087.2 htgs_phase:3 submitted_to_sgn_as:C06SLm0132E21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="42104" stop="44882"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42403" g_stop="42503" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="101" r_length="101" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42504" i_stop="43589" i_length="1086">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43590" g_stop="43718" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="230" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43719" i_stop="43834" i_length="116">
            <donor d_prob="0.475" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43835" g_stop="43963" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="359" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43964" i_stop="44564" i_length="601">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44565" g_stop="44582" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="377" r_length="18" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0132E21.2" gen_strand="+" ref_id="SGN-E283973" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>377</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0132E21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E283973" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42403" e_stop="42503"/>
          <exon e_start="43590" e_stop="43718"/>
          <exon e_start="43835" e_stop="43963"/>
          <exon e_start="44565" e_stop="44582"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGTTGTGGGATCTGCGAAAAAGCAAGAACCTTTGAGGGTAATGATATCGGGAGCTCCTGCTTCTGGTAAAGGAACGCAATGCGAGCTCATTACCAAGAAGGTAATGGTTCTTTTTTTTTTCTTCATAGGGACAAGTTGGTTGTTATGATCTTTTATGTTTGAATTATCTTTATGCTGTTCTATGTAGGTTTCTCTTTTTGGAATGGATGATGATCCATTGGGATTTTGGTTTTATAATTCTGAATATGAAATCTCTATTCTTGAAAGTTTATCTACTAATATAAATCGTCCCAATTTCCACTAATATGTGTGTTATAGACCAGGTTGTACAATATAGAGGTATACTTCCATTCATGACTTCTGACCATGGGTGTTTCTAAATTTGAGGACCAGTTTTTTACCATATTACTGGTATCATTCTACCCAGGACCTCTTATGACTTGACCCTTACTCCATTTGGTTCGTAGACTGATAACACAAGAACTGGTATGTGGGGATTGTTATACACTGATTGACAATACCGGCATGGTTAATACCAGTATTAGCTATGCATGTTGTATATCTAGTATAAGTCACAGGGTGATACACCTCTTTTACCACAGCCTAAAAAAGCAGAATTATCAGATTTATCTGCACTCTTGTAAACTAAAATCATCATGTAAATTTGTCCAGTTATCAGATTTGTCTTGAAAAGCATCTTACTAGCATCTGTTCAGCTGTTCCATATATTTACGTTATTTCCTTAGCATAACATGTATGTCTCCTATGTGTATTCTCTTACAATTCACTGGTACCTTGTTCCCTAGCCTCTTTATCTTGTTTATTATGAATTCTCATCTGGTTCCTCTAAATTCTCATTGGTGGGTTTGTAATATTTCCTTCAGCCGAAATTGTCCATATTATAATCAACTTTATCTTAATTATTAGCAAGTCCCTGCTACTTGAACTCACATTCTTCACATTTCTTGATTGATTTAGCTTTAGTTTGATTTCCATGCTCCTTATTCCTTCCCTTGTTTAACATGTAGTTGTAAAAAGGTATGTTGCTAGTAGCATTTGATGTTCCATTTCAAAAAATGTCTCTAGTTGCAGTCGATGTTAGTTGCTACCTTAATTACCCATTTTCCTTGTTATGTATTACCCTGTGAGAAGTAATAAATTGAATACCGTGAGCTCATATATGCAGTACGATTTGGTGCATATTGCTGCTGGAGATTTATTGAGGGCTGAAATTGCTGCAGGCACTGAAAATGGGAGGAGAGCAAAGGAGTATATGGATAAAGGACAATTGGTACCAAACGAGATAGTTGTAACGGTAGGTTTACCTGGCAAACTGGTTCCTGCTTTTGTTAGCATGCTATTTTAAAGGTTGAAAGAGATCATTAGAAAGAGTGTTTTATTCATATGTGATTTGTTGATTCCTTGTTTTAGATGGTCAAAGAGCGGTTGATGTGTCCAGACTCTCAAGAAAAGGGTTGGCTTTTAGATGGATATCCTCGGAGCTTGTCTCAAGCAGTAGCTCTCAAAGAGTTCCAGCCAAACCTTTTCATTCTTCTGGAAGTGAGGTTCTGCTATTGATATCCTCTGATTGTGTTCTCAATCTCTTTCTAGTTAAAGCCTTAAGAGGATGAAAAGGATCAACATAGAGTATCCTGCATTTAAAATTTACCTGAAAAAATCTTTGAACGGGAAAACTGTGCTTTTGGTCTGTGAAAACCTAATTTTAGCCTTCAATTGAGAGAACTGTGCGCTTTTGGTTCCTCCTCTAGCATATTTCCCTACAAGAGTCAGATTACTTCCTTAAAATGCAAAAGAGTATCAAAATAACTTTCTTAGCATAAAAGGTGAATAGTTGTATGGTTTAATAGTTGTACTTTCATGGAATTTATCAGTTGAGGGACCAAAAGCTGATACTATCAGTTGGAGGTTTAGTGGGCTTGACTGAATACTGTGATTCGTTAGTACCAAGATTACAACTTACAAATAACCAAAAAAAAATTATTTTTTTCCTTATTTTAAATATGATTAGTTTTTTCTGATTCTTTTTTGTTTCACATGTCGTATATTAAACTGCAAGAGGTTTCAGAATAAATGCACCTTCATCGAGTCATCAACCAATGTTTTAACTTTTAACAGGAACACGTTATATTGTAAATGATAGGTACCTGAAGAGATACTT</genome_strand>
        <mrna_strand>TGGTTGTGGGATCTGCGAAAAAGCAAGAACCTTTGAGGGTAATGATATCGGGAGCTCCTGCTTCTGGTAAAGGAACGCAATGCGAGCTCATTACCAAGAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACGATTTGGTGCATATTGCTGCTGGAGATTTATTGAGGGCTGAAATTGCTGCAGGCACTGAAAATGGGAGGAGAGCAAAGGAGTATATGGATAAAGGACAATTGGTACCAAACGAGATAGTTGTAACG....................................................................................................................ATGGTCAAAGAGCGGTTGATGTGTCCAGACTCTCAAGAAAAGGGTTGGCTTTTAGATGGATATCCTCGGAGCTTGTCTCAAGCAGTAGCTCTCAAAGAGTTCCAGCCAAACCTTTTCATTCTTCTGGAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCTGAAGAGATACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E242466" ref_strand="+" ref_description="SGN-E242466 [cLED-30-A19]">
      <seq>gggagctcctgcttctggtaaaggaacgcaatgcgagctcattaccaagaagtacgatttggtgcatattgctgctggagatttattgagggctgaaattgctgcaggcactgaaaatgggaggagagcaaaggagtatatggataaaggacaattggtaccaaacgagatagttgtaacgatggtcaaagagcggttgatgtgtccagactctcaagaaaagggttggcttttagatggatatcctcggagcttgtctcaagcagtagctctcaaagagttccagccaaaccttttcattcttctggaagtacctgaagagatacttgttgagagagtggttggccgtagactagatcctgtaactgggagaatataccatttgaagtattctccgccagagaccgatgaaatcgctgcaaggcttacccagcgctttgatgatacagaagaaaaggtgaagctgcgtctgcacactcaccgtcaaaatgtggaatcagttctctcaatgtacaaagatactatattcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0132E21.2" temp_strand="+" temp_description="C06SLm0132E21.2  AC211087.2 htgs_phase:3 submitted_to_sgn_as:C06SLm0132E21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="42152" stop="45474"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42452" g_stop="42503" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42504" i_stop="43589" i_length="1086">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43590" g_stop="43718" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="181" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43719" i_stop="43834" i_length="116">
            <donor d_prob="0.475" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43835" g_stop="43963" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="310" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43964" i_stop="44564" i_length="601">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44565" g_stop="44711" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="457" r_length="147" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="44712" i_stop="45101" i_length="390">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="45102" g_stop="45174" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="530" r_length="73" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0132E21.2" gen_strand="+" ref_id="SGN-E242466" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>530</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0132E21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E242466" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42452" e_stop="42503"/>
          <exon e_start="43590" e_stop="43718"/>
          <exon e_start="43835" e_stop="43963"/>
          <exon e_start="44565" e_stop="44711"/>
          <exon e_start="45102" e_stop="45174"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGAGCTCCTGCTTCTGGTAAAGGAACGCAATGCGAGCTCATTACCAAGAAGGTAATGGTTCTTTTTTTTTTCTTCATAGGGACAAGTTGGTTGTTATGATCTTTTATGTTTGAATTATCTTTATGCTGTTCTATGTAGGTTTCTCTTTTTGGAATGGATGATGATCCATTGGGATTTTGGTTTTATAATTCTGAATATGAAATCTCTATTCTTGAAAGTTTATCTACTAATATAAATCGTCCCAATTTCCACTAATATGTGTGTTATAGACCAGGTTGTACAATATAGAGGTATACTTCCATTCATGACTTCTGACCATGGGTGTTTCTAAATTTGAGGACCAGTTTTTTACCATATTACTGGTATCATTCTACCCAGGACCTCTTATGACTTGACCCTTACTCCATTTGGTTCGTAGACTGATAACACAAGAACTGGTATGTGGGGATTGTTATACACTGATTGACAATACCGGCATGGTTAATACCAGTATTAGCTATGCATGTTGTATATCTAGTATAAGTCACAGGGTGATACACCTCTTTTACCACAGCCTAAAAAAGCAGAATTATCAGATTTATCTGCACTCTTGTAAACTAAAATCATCATGTAAATTTGTCCAGTTATCAGATTTGTCTTGAAAAGCATCTTACTAGCATCTGTTCAGCTGTTCCATATATTTACGTTATTTCCTTAGCATAACATGTATGTCTCCTATGTGTATTCTCTTACAATTCACTGGTACCTTGTTCCCTAGCCTCTTTATCTTGTTTATTATGAATTCTCATCTGGTTCCTCTAAATTCTCATTGGTGGGTTTGTAATATTTCCTTCAGCCGAAATTGTCCATATTATAATCAACTTTATCTTAATTATTAGCAAGTCCCTGCTACTTGAACTCACATTCTTCACATTTCTTGATTGATTTAGCTTTAGTTTGATTTCCATGCTCCTTATTCCTTCCCTTGTTTAACATGTAGTTGTAAAAAGGTATGTTGCTAGTAGCATTTGATGTTCCATTTCAAAAAATGTCTCTAGTTGCAGTCGATGTTAGTTGCTACCTTAATTACCCATTTTCCTTGTTATGTATTACCCTGTGAGAAGTAATAAATTGAATACCGTGAGCTCATATATGCAGTACGATTTGGTGCATATTGCTGCTGGAGATTTATTGAGGGCTGAAATTGCTGCAGGCACTGAAAATGGGAGGAGAGCAAAGGAGTATATGGATAAAGGACAATTGGTACCAAACGAGATAGTTGTAACGGTAGGTTTACCTGGCAAACTGGTTCCTGCTTTTGTTAGCATGCTATTTTAAAGGTTGAAAGAGATCATTAGAAAGAGTGTTTTATTCATATGTGATTTGTTGATTCCTTGTTTTAGATGGTCAAAGAGCGGTTGATGTGTCCAGACTCTCAAGAAAAGGGTTGGCTTTTAGATGGATATCCTCGGAGCTTGTCTCAAGCAGTAGCTCTCAAAGAGTTCCAGCCAAACCTTTTCATTCTTCTGGAAGTGAGGTTCTGCTATTGATATCCTCTGATTGTGTTCTCAATCTCTTTCTAGTTAAAGCCTTAAGAGGATGAAAAGGATCAACATAGAGTATCCTGCATTTAAAATTTACCTGAAAAAATCTTTGAACGGGAAAACTGTGCTTTTGGTCTGTGAAAACCTAATTTTAGCCTTCAATTGAGAGAACTGTGCGCTTTTGGTTCCTCCTCTAGCATATTTCCCTACAAGAGTCAGATTACTTCCTTAAAATGCAAAAGAGTATCAAAATAACTTTCTTAGCATAAAAGGTGAATAGTTGTATGGTTTAATAGTTGTACTTTCATGGAATTTATCAGTTGAGGGACCAAAAGCTGATACTATCAGTTGGAGGTTTAGTGGGCTTGACTGAATACTGTGATTCGTTAGTACCAAGATTACAACTTACAAATAACCAAAAAAAAATTATTTTTTTCCTTATTTTAAATATGATTAGTTTTTTCTGATTCTTTTTTGTTTCACATGTCGTATATTAAACTGCAAGAGGTTTCAGAATAAATGCACCTTCATCGAGTCATCAACCAATGTTTTAACTTTTAACAGGAACACGTTATATTGTAAATGATAGGTACCTGAAGAGATACTTGTTGAGAGAGTGGTTGGCCGTAGACTAGATCCTGTAACTGGGAGAATATACCATTTGAAGTATTCTCCGCCAGAGACCGATGAAATCGCTGCAAGGCTTACCCAGCGCTTTGATGATACAGAAGAAAAGGCATGTTAATGCATGAATACGTACATTATTGTTGCTACAACTGCTGTAGGGCTTTTCCTTTTGTATGAAGCTTTTAAATCACGTAAACTTTTTTAATTCTTATTTGGTGGAAGCCTACCGTTTGTCCCATTGGTCATTTCTTGACCTTCTAATCAAACCATTTTAATCTATTCTCCTCCTGGAAATTTTGTTGCAGGTCTCGAAATTTCCATTTTCAACTAAATCTTTCTTTTAGCTATTTCCTTTATCATTCTTGCTGTCCTTTTCCCTTGCTTACTCAAGTCGCTTTGTAGATAACTGACTTAAGTATAGGTTTCTATAACATTATAAATAATGTTGTGTGATCAGCTTCATTTTTGTCTAATTTCTTTTTCAATTTACCGTTTACAGGTGAAGCTGCGTCTGCACACTCACCGTCAAAATGTGGAATCAGTTCTCTCAATGTACAAAGATACTATATTCC</genome_strand>
        <mrna_strand>GGGAGCTCCTGCTTCTGGTAAAGGAACGCAATGCGAGCTCATTACCAAGAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACGATTTGGTGCATATTGCTGCTGGAGATTTATTGAGGGCTGAAATTGCTGCAGGCACTGAAAATGGGAGGAGAGCAAAGGAGTATATGGATAAAGGACAATTGGTACCAAACGAGATAGTTGTAACG....................................................................................................................ATGGTCAAAGAGCGGTTGATGTGTCCAGACTCTCAAGAAAAGGGTTGGCTTTTAGATGGATATCCTCGGAGCTTGTCTCAAGCAGTAGCTCTCAAAGAGTTCCAGCCAAACCTTTTCATTCTTCTGGAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCTGAAGAGATACTTGTTGAGAGAGTGGTTGGCCGTAGACTAGATCCTGTAACTGGGAGAATATACCATTTGAAGTATTCTCCGCCAGAGACCGATGAAATCGCTGCAAGGCTTACCCAGCGCTTTGATGATACAGAAGAAAAG......................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGCTGCGTCTGCACACTCACCGTCAAAATGTGGAATCAGTTCTCTCAATGTACAAAGATACTATATTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E390371" ref_strand="+" ref_description="SGN-E390371 [TUS-41-E21](-)">
      <seq>aaaggacaattggtaccaaacgagatagttgtaacgatggtcaaagagcggttgatgtgtccagactctcaagaaaagggttggcttttagatggatatcctcggagcttgtctcaagcagtagctctcaaagagttccagccaaaccttttcattcttctggaagtacctgaagagatacttgttgagagagtggttggccgtagactagatcctgtaactgggagaatataccatttgaagtattctccgccagagaccgatgaaatcgctgcaaggcttacccagcgctttgatgatacagaagaaaaggtgaagctgcgtctgcacactcaccgtcaaaatgtggaatcagttctctcaatgtacaaagatactatattccaggtggacgggagcgtttccaaagaggaagtatttgctcaaattgatggtgcattaactcaacttcttgaagcaaaggagtgaagatttggaaccgtaatgtcatagagatcaggaaaaatctgcagaatgtaccatgtaatactcaggaggatcatcgaagacaaaagagtaacattgttggttgctatccctcttatacaaatgtatgaaatgtttatgtatatcgtatttgcttccaactatctatgtggatattcattgaatcagattcaaagtttactacaaaacttgttttgtgtaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0132E21.2" temp_strand="+" temp_description="C06SLm0132E21.2  AC211087.2 htgs_phase:3 submitted_to_sgn_as:C06SLm0132E21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="43383" stop="46390"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43683" g_stop="43718" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43719" i_stop="43834" i_length="116">
            <donor d_prob="0.475" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43835" g_stop="43963" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="165" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43964" i_stop="44564" i_length="601">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44565" g_stop="44711" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="312" r_length="147" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44712" i_stop="45101" i_length="390">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45102" g_stop="45176" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="387" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="45177" i_stop="45788" i_length="612">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="45789" g_stop="46091" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="689" r_length="302" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="690" polyA_stop="700"/>
      <MATCH_line gen_id="C06SLm0132E21.2" gen_strand="+" ref_id="SGN-E390371" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>690</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0132E21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E390371" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43683" e_stop="43718"/>
          <exon e_start="43835" e_stop="43963"/>
          <exon e_start="44565" e_stop="44711"/>
          <exon e_start="45102" e_stop="45176"/>
          <exon e_start="45789" e_stop="46091"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGGACAATTGGTACCAAACGAGATAGTTGTAACGGTAGGTTTACCTGGCAAACTGGTTCCTGCTTTTGTTAGCATGCTATTTTAAAGGTTGAAAGAGATCATTAGAAAGAGTGTTTTATTCATATGTGATTTGTTGATTCCTTGTTTTAGATGGTCAAAGAGCGGTTGATGTGTCCAGACTCTCAAGAAAAGGGTTGGCTTTTAGATGGATATCCTCGGAGCTTGTCTCAAGCAGTAGCTCTCAAAGAGTTCCAGCCAAACCTTTTCATTCTTCTGGAAGTGAGGTTCTGCTATTGATATCCTCTGATTGTGTTCTCAATCTCTTTCTAGTTAAAGCCTTAAGAGGATGAAAAGGATCAACATAGAGTATCCTGCATTTAAAATTTACCTGAAAAAATCTTTGAACGGGAAAACTGTGCTTTTGGTCTGTGAAAACCTAATTTTAGCCTTCAATTGAGAGAACTGTGCGCTTTTGGTTCCTCCTCTAGCATATTTCCCTACAAGAGTCAGATTACTTCCTTAAAATGCAAAAGAGTATCAAAATAACTTTCTTAGCATAAAAGGTGAATAGTTGTATGGTTTAATAGTTGTACTTTCATGGAATTTATCAGTTGAGGGACCAAAAGCTGATACTATCAGTTGGAGGTTTAGTGGGCTTGACTGAATACTGTGATTCGTTAGTACCAAGATTACAACTTACAAATAACCAAAAAAAAATTATTTTTTTCCTTATTTTAAATATGATTAGTTTTTTCTGATTCTTTTTTGTTTCACATGTCGTATATTAAACTGCAAGAGGTTTCAGAATAAATGCACCTTCATCGAGTCATCAACCAATGTTTTAACTTTTAACAGGAACACGTTATATTGTAAATGATAGGTACCTGAAGAGATACTTGTTGAGAGAGTGGTTGGCCGTAGACTAGATCCTGTAACTGGGAGAATATACCATTTGAAGTATTCTCCGCCAGAGACCGATGAAATCGCTGCAAGGCTTACCCAGCGCTTTGATGATACAGAAGAAAAGGCATGTTAATGCATGAATACGTACATTATTGTTGCTACAACTGCTGTAGGGCTTTTCCTTTTGTATGAAGCTTTTAAATCACGTAAACTTTTTTAATTCTTATTTGGTGGAAGCCTACCGTTTGTCCCATTGGTCATTTCTTGACCTTCTAATCAAACCATTTTAATCTATTCTCCTCCTGGAAATTTTGTTGCAGGTCTCGAAATTTCCATTTTCAACTAAATCTTTCTTTTAGCTATTTCCTTTATCATTCTTGCTGTCCTTTTCCCTTGCTTACTCAAGTCGCTTTGTAGATAACTGACTTAAGTATAGGTTTCTATAACATTATAAATAATGTTGTGTGATCAGCTTCATTTTTGTCTAATTTCTTTTTCAATTTACCGTTTACAGGTGAAGCTGCGTCTGCACACTCACCGTCAAAATGTGGAATCAGTTCTCTCAATGTACAAAGATACTATATTCCAGGTATTCTTTTTGCCACAGATGTGGTGCAGTTGCTTCACTCGGGAATGCAGATTGAAACACTCATCAGTCACCATCAAAGTGTGGAATCATTCCTTATATACTTGATTCATAGTTTATTGGGTTGTTTGATGGTTTACAAGGTCTTGGTTAACAGGAATATAGTCCATAAAAGACAATGTGGAAGGGACTCGGTGGAAATGGTTCGATGAGAAAGTAGTTTGGTTTTCTATTTGGCAAAAGAACAATGATATGGTTATAAAATTTCGTTGTTTGACATGTAGGTTACAAAATGATTACTTTAAATTATCTTCAGTTCATCCAGGTCATCCTTCCTCATAACAGTTGTAAAACAAAGGAAAGCCAAAGCAAAAGGGCTATACATCCTCTTTTATCTTAAAATTTACTCAATAAGCTAAAGGAAGAGTAAATCCTTTTGAGTATTACATTCATACTAATCAATCTGGGGGGAAATATACTTAATCAAGGACTCCCCTTCCCTCTTCAATGAACAAGGATACTGTATGTTCTTTCTTTCCATACGCGTGCATGATCGTGTTGTTATCATTTCCTGGTGTTAAAACTTCCATCTTCTCTGAGCTATTTTAATTTCAGGTGGACGGGAGCGTTTCCAAAGAGGAAGTATTTGCTCAAATTGATGGTGCATTAACTCAACTTCTTGAAGCAAAGGAGTGAAGATTTGGAACCGTAATGTCATAGAGATCAGGAAAAATCTGCAGAATGTACCATGTAATACTCAGGAGGATCATCGAAGACAAAAGAGTAACATTGTTGGTTGCTATCCCTCTTATACAAATGTATGAAATGTTTATGTATATCGTATTTGCTTCCAACTATCTATGTGGATATTCATTGAATCAGATTCAAAGTTTACTACAAAACTTGTTTTGTTGTAAG</genome_strand>
        <mrna_strand>AAAGGACAATTGGTACCAAACGAGATAGTTGTAACG....................................................................................................................ATGGTCAAAGAGCGGTTGATGTGTCCAGACTCTCAAGAAAAGGGTTGGCTTTTAGATGGATATCCTCGGAGCTTGTCTCAAGCAGTAGCTCTCAAAGAGTTCCAGCCAAACCTTTTCATTCTTCTGGAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCTGAAGAGATACTTGTTGAGAGAGTGGTTGGCCGTAGACTAGATCCTGTAACTGGGAGAATATACCATTTGAAGTATTCTCCGCCAGAGACCGATGAAATCGCTGCAAGGCTTACCCAGCGCTTTGATGATACAGAAGAAAAG......................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGCTGCGTCTGCACACTCACCGTCAAAATGTGGAATCAGTTCTCTCAATGTACAAAGATACTATATTCCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGACGGGAGCGTTTCCAAAGAGGAAGTATTTGCTCAAATTGATGGTGCATTAACTCAACTTCTTGAAGCAAAGGAGTGAAGATTTGGAACCGTAATGTCATAGAGATCAGGAAAAATCTGCAGAATGTACCATGTAATACTCAGGAGGATCATCGAAGACAAAAGAGTAACATTGTTGGTTGCTATCCCTCTTATACAAATGTATGAAATGTTTATGTATATCGTATTTGCTTCCAACTATCTATGTGGATATTCATTGAATCAGATTCAAAGTTTACTACAAAACTTGTTTTG-TGTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E370115" ref_strand="+" ref_description="SGN-E370115 [TUS-26-J12](-)">
      <seq>tcctcggagcttgtctcaagcagtagctctcaaagagttccagccaaaccttttcattcttctggaagtacctgaagagatacttgttgagagagtggttggccgtagactagatcctgtaactgggagaatataccatttgaagtattctccgccagagaccgatgaaatcgctgcaaggcttacccagcgctttgatgatacagaagaaaaggtgaagctgcgtctgcacactcaccgtcaaaatgtggaatcagttctctcaatgtacaaagatactatattccaggtggacgggagcgtttccaaagaggaagtatttgctcaaattgatggtgcattaactcaacttcttgaagcaaaggagtgaagatttggaaccgtaatgtcatagagatcaggaaaaatctgcagaatgtaccatgtaatactcaggaggatcatcgaagacaaaagagtaacattgttggttgctatccctcttatacaaatgtatgaaatgtttatgtatatcgtatttgcttccaactatctatgtggatattcattgaatcagattcaaagtttactacaaaacttgttttgttgtaaggcccagctcgctagtgatattgttagcttcgagtttacacctatccggctttaagacgtcattagggtgtaagacctgcttatttatgtactcaacatatctcatgtaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0132E21.2" temp_strand="+" temp_description="C06SLm0132E21.2  AC211087.2 htgs_phase:3 submitted_to_sgn_as:C06SLm0132E21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="43597" stop="46499"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43897" g_stop="43963" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="67" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43964" i_stop="44564" i_length="601">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44565" g_stop="44711" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="214" r_length="147" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44712" i_stop="45101" i_length="390">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45102" g_stop="45176" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="289" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="45177" i_stop="45788" i_length="612">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45789" g_stop="46209" g_length="421"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="710" r_length="421" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0132E21.2" gen_strand="+" ref_id="SGN-E370115" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>710</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0132E21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E370115" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43897" e_stop="43963"/>
          <exon e_start="44565" e_stop="44711"/>
          <exon e_start="45102" e_stop="45176"/>
          <exon e_start="45789" e_stop="46209"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTCGGAGCTTGTCTCAAGCAGTAGCTCTCAAAGAGTTCCAGCCAAACCTTTTCATTCTTCTGGAAGTGAGGTTCTGCTATTGATATCCTCTGATTGTGTTCTCAATCTCTTTCTAGTTAAAGCCTTAAGAGGATGAAAAGGATCAACATAGAGTATCCTGCATTTAAAATTTACCTGAAAAAATCTTTGAACGGGAAAACTGTGCTTTTGGTCTGTGAAAACCTAATTTTAGCCTTCAATTGAGAGAACTGTGCGCTTTTGGTTCCTCCTCTAGCATATTTCCCTACAAGAGTCAGATTACTTCCTTAAAATGCAAAAGAGTATCAAAATAACTTTCTTAGCATAAAAGGTGAATAGTTGTATGGTTTAATAGTTGTACTTTCATGGAATTTATCAGTTGAGGGACCAAAAGCTGATACTATCAGTTGGAGGTTTAGTGGGCTTGACTGAATACTGTGATTCGTTAGTACCAAGATTACAACTTACAAATAACCAAAAAAAAATTATTTTTTTCCTTATTTTAAATATGATTAGTTTTTTCTGATTCTTTTTTGTTTCACATGTCGTATATTAAACTGCAAGAGGTTTCAGAATAAATGCACCTTCATCGAGTCATCAACCAATGTTTTAACTTTTAACAGGAACACGTTATATTGTAAATGATAGGTACCTGAAGAGATACTTGTTGAGAGAGTGGTTGGCCGTAGACTAGATCCTGTAACTGGGAGAATATACCATTTGAAGTATTCTCCGCCAGAGACCGATGAAATCGCTGCAAGGCTTACCCAGCGCTTTGATGATACAGAAGAAAAGGCATGTTAATGCATGAATACGTACATTATTGTTGCTACAACTGCTGTAGGGCTTTTCCTTTTGTATGAAGCTTTTAAATCACGTAAACTTTTTTAATTCTTATTTGGTGGAAGCCTACCGTTTGTCCCATTGGTCATTTCTTGACCTTCTAATCAAACCATTTTAATCTATTCTCCTCCTGGAAATTTTGTTGCAGGTCTCGAAATTTCCATTTTCAACTAAATCTTTCTTTTAGCTATTTCCTTTATCATTCTTGCTGTCCTTTTCCCTTGCTTACTCAAGTCGCTTTGTAGATAACTGACTTAAGTATAGGTTTCTATAACATTATAAATAATGTTGTGTGATCAGCTTCATTTTTGTCTAATTTCTTTTTCAATTTACCGTTTACAGGTGAAGCTGCGTCTGCACACTCACCGTCAAAATGTGGAATCAGTTCTCTCAATGTACAAAGATACTATATTCCAGGTATTCTTTTTGCCACAGATGTGGTGCAGTTGCTTCACTCGGGAATGCAGATTGAAACACTCATCAGTCACCATCAAAGTGTGGAATCATTCCTTATATACTTGATTCATAGTTTATTGGGTTGTTTGATGGTTTACAAGGTCTTGGTTAACAGGAATATAGTCCATAAAAGACAATGTGGAAGGGACTCGGTGGAAATGGTTCGATGAGAAAGTAGTTTGGTTTTCTATTTGGCAAAAGAACAATGATATGGTTATAAAATTTCGTTGTTTGACATGTAGGTTACAAAATGATTACTTTAAATTATCTTCAGTTCATCCAGGTCATCCTTCCTCATAACAGTTGTAAAACAAAGGAAAGCCAAAGCAAAAGGGCTATACATCCTCTTTTATCTTAAAATTTACTCAATAAGCTAAAGGAAGAGTAAATCCTTTTGAGTATTACATTCATACTAATCAATCTGGGGGGAAATATACTTAATCAAGGACTCCCCTTCCCTCTTCAATGAACAAGGATACTGTATGTTCTTTCTTTCCATACGCGTGCATGATCGTGTTGTTATCATTTCCTGGTGTTAAAACTTCCATCTTCTCTGAGCTATTTTAATTTCAGGTGGACGGGAGCGTTTCCAAAGAGGAAGTATTTGCTCAAATTGATGGTGCATTAACTCAACTTCTTGAAGCAAAGGAGTGAAGATTTGGAACCGTAATGTCATAGAGATCAGGAAAAATCTGCAGAATGTACCATGTAATACTCAGGAGGATCATCGAAGACAAAAGAGTAACATTGTTGGTTGCTATCCCTCTTATACAAATGTATGAAATGTTTATGTATATCGTATTTGCTTCCAACTATCTATGTGGATATTCATTGAATCAGATTCAAAGTTTACTACAAAACTTGTTTTGTTGTAAGGCCCAGCTCGCTAGTGATATTGTTAGCTTCGAGTTTACACCTATCCGGCTTTAAGACGTCATTAGGGTGTAAGACCTGCTTATTTATGTACTCAACATATCTCATGTATTTTTGCCTA</genome_strand>
        <mrna_strand>TCCTCGGAGCTTGTCTCAAGCAGTAGCTCTCAAAGAGTTCCAGCCAAACCTTTTCATTCTTCTGGAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCTGAAGAGATACTTGTTGAGAGAGTGGTTGGCCGTAGACTAGATCCTGTAACTGGGAGAATATACCATTTGAAGTATTCTCCGCCAGAGACCGATGAAATCGCTGCAAGGCTTACCCAGCGCTTTGATGATACAGAAGAAAAG......................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGCTGCGTCTGCACACTCACCGTCAAAATGTGGAATCAGTTCTCTCAATGTACAAAGATACTATATTCCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGACGGGAGCGTTTCCAAAGAGGAAGTATTTGCTCAAATTGATGGTGCATTAACTCAACTTCTTGAAGCAAAGGAGTGAAGATTTGGAACCGTAATGTCATAGAGATCAGGAAAAATCTGCAGAATGTACCATGTAATACTCAGGAGGATCATCGAAGACAAAAGAGTAACATTGTTGGTTGCTATCCCTCTTATACAAATGTATGAAATGTTTATGTATATCGTATTTGCTTCCAACTATCTATGTGGATATTCATTGAATCAGATTCAAAGTTTACTACAAAACTTGTTTTGTTGTAAGGCCCAGCTCGCTAGTGATATTGTTAGCTTCGAGTTTACACCTATCCGGCTTTAAGACGTCATTAGGGTGTAAGACCTGCTTATTTATGTACTCAACATATCTCATGTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E396138" ref_strand="+" ref_description="SGN-E396138 [TUS-17-E21](-)">
      <seq>caagcagtagctctcaaagagttccagccaaaccttttcattcttctggaagtacctgaagagatacttgttgagagagtggttggccgtagactagatcctgtaactgggagaatataccatttgaagtattctccgccagagaccgatgaaatcgctgcaaggcttacccagcgctttgatgatacagaagaaaaggtgaagctgcgtctgcacactcaccgtcaaaatgtggaatcagttctctcaatgtacaaagatactatattccaggtggacgggagcgtttccaaagaggaagtatttgctcaaattgatggtgcattaactcaacttcttgaagcaaaggagtgaagatttggaaccgtaatgtcatagagatcaggaaaaatctgcagaatgtaccatgtaatactcaggaggatcatcgaagacaaaagagtaacattgttggttgctatccctcttatacaaatgtatgaaatgtttatgtatatcgtatttgcttccaactatctatgtggatattcactgaatcagattcaaagtttactacaaaacttgttttgttgtaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0132E21.2" temp_strand="+" temp_description="C06SLm0132E21.2  AC211087.2 htgs_phase:3 submitted_to_sgn_as:C06SLm0132E21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="43613" stop="46390"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43913" g_stop="43963" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43964" i_stop="44564" i_length="601">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44565" g_stop="44711" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="198" r_length="147" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44712" i_stop="45101" i_length="390">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45102" g_stop="45176" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="273" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="45177" i_stop="45788" i_length="612">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45789" g_stop="46091" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="576" r_length="303" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="577" polyA_stop="593"/>
      <MATCH_line gen_id="C06SLm0132E21.2" gen_strand="+" ref_id="SGN-E396138" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>576</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0132E21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E396138" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43913" e_stop="43963"/>
          <exon e_start="44565" e_stop="44711"/>
          <exon e_start="45102" e_stop="45176"/>
          <exon e_start="45789" e_stop="46091"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGCAGTAGCTCTCAAAGAGTTCCAGCCAAACCTTTTCATTCTTCTGGAAGTGAGGTTCTGCTATTGATATCCTCTGATTGTGTTCTCAATCTCTTTCTAGTTAAAGCCTTAAGAGGATGAAAAGGATCAACATAGAGTATCCTGCATTTAAAATTTACCTGAAAAAATCTTTGAACGGGAAAACTGTGCTTTTGGTCTGTGAAAACCTAATTTTAGCCTTCAATTGAGAGAACTGTGCGCTTTTGGTTCCTCCTCTAGCATATTTCCCTACAAGAGTCAGATTACTTCCTTAAAATGCAAAAGAGTATCAAAATAACTTTCTTAGCATAAAAGGTGAATAGTTGTATGGTTTAATAGTTGTACTTTCATGGAATTTATCAGTTGAGGGACCAAAAGCTGATACTATCAGTTGGAGGTTTAGTGGGCTTGACTGAATACTGTGATTCGTTAGTACCAAGATTACAACTTACAAATAACCAAAAAAAAATTATTTTTTTCCTTATTTTAAATATGATTAGTTTTTTCTGATTCTTTTTTGTTTCACATGTCGTATATTAAACTGCAAGAGGTTTCAGAATAAATGCACCTTCATCGAGTCATCAACCAATGTTTTAACTTTTAACAGGAACACGTTATATTGTAAATGATAGGTACCTGAAGAGATACTTGTTGAGAGAGTGGTTGGCCGTAGACTAGATCCTGTAACTGGGAGAATATACCATTTGAAGTATTCTCCGCCAGAGACCGATGAAATCGCTGCAAGGCTTACCCAGCGCTTTGATGATACAGAAGAAAAGGCATGTTAATGCATGAATACGTACATTATTGTTGCTACAACTGCTGTAGGGCTTTTCCTTTTGTATGAAGCTTTTAAATCACGTAAACTTTTTTAATTCTTATTTGGTGGAAGCCTACCGTTTGTCCCATTGGTCATTTCTTGACCTTCTAATCAAACCATTTTAATCTATTCTCCTCCTGGAAATTTTGTTGCAGGTCTCGAAATTTCCATTTTCAACTAAATCTTTCTTTTAGCTATTTCCTTTATCATTCTTGCTGTCCTTTTCCCTTGCTTACTCAAGTCGCTTTGTAGATAACTGACTTAAGTATAGGTTTCTATAACATTATAAATAATGTTGTGTGATCAGCTTCATTTTTGTCTAATTTCTTTTTCAATTTACCGTTTACAGGTGAAGCTGCGTCTGCACACTCACCGTCAAAATGTGGAATCAGTTCTCTCAATGTACAAAGATACTATATTCCAGGTATTCTTTTTGCCACAGATGTGGTGCAGTTGCTTCACTCGGGAATGCAGATTGAAACACTCATCAGTCACCATCAAAGTGTGGAATCATTCCTTATATACTTGATTCATAGTTTATTGGGTTGTTTGATGGTTTACAAGGTCTTGGTTAACAGGAATATAGTCCATAAAAGACAATGTGGAAGGGACTCGGTGGAAATGGTTCGATGAGAAAGTAGTTTGGTTTTCTATTTGGCAAAAGAACAATGATATGGTTATAAAATTTCGTTGTTTGACATGTAGGTTACAAAATGATTACTTTAAATTATCTTCAGTTCATCCAGGTCATCCTTCCTCATAACAGTTGTAAAACAAAGGAAAGCCAAAGCAAAAGGGCTATACATCCTCTTTTATCTTAAAATTTACTCAATAAGCTAAAGGAAGAGTAAATCCTTTTGAGTATTACATTCATACTAATCAATCTGGGGGGAAATATACTTAATCAAGGACTCCCCTTCCCTCTTCAATGAACAAGGATACTGTATGTTCTTTCTTTCCATACGCGTGCATGATCGTGTTGTTATCATTTCCTGGTGTTAAAACTTCCATCTTCTCTGAGCTATTTTAATTTCAGGTGGACGGGAGCGTTTCCAAAGAGGAAGTATTTGCTCAAATTGATGGTGCATTAACTCAACTTCTTGAAGCAAAGGAGTGAAGATTTGGAACCGTAATGTCATAGAGATCAGGAAAAATCTGCAGAATGTACCATGTAATACTCAGGAGGATCATCGAAGACAAAAGAGTAACATTGTTGGTTGCTATCCCTCTTATACAAATGTATGAAATGTTTATGTATATCGTATTTGCTTCCAACTATCTATGTGGATATTCATTGAATCAGATTCAAAGTTTACTACAAAACTTGTTTTGTTGTAAG</genome_strand>
        <mrna_strand>CAAGCAGTAGCTCTCAAAGAGTTCCAGCCAAACCTTTTCATTCTTCTGGAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCTGAAGAGATACTTGTTGAGAGAGTGGTTGGCCGTAGACTAGATCCTGTAACTGGGAGAATATACCATTTGAAGTATTCTCCGCCAGAGACCGATGAAATCGCTGCAAGGCTTACCCAGCGCTTTGATGATACAGAAGAAAAG......................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGCTGCGTCTGCACACTCACCGTCAAAATGTGGAATCAGTTCTCTCAATGTACAAAGATACTATATTCCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGACGGGAGCGTTTCCAAAGAGGAAGTATTTGCTCAAATTGATGGTGCATTAACTCAACTTCTTGAAGCAAAGGAGTGAAGATTTGGAACCGTAATGTCATAGAGATCAGGAAAAATCTGCAGAATGTACCATGTAATACTCAGGAGGATCATCGAAGACAAAAGAGTAACATTGTTGGTTGCTATCCCTCTTATACAAATGTATGAAATGTTTATGTATATCGTATTTGCTTCCAACTATCTATGTGGATATTCACTGAATCAGATTCAAAGTTTACTACAAAACTTGTTTTGTTGTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E228944" ref_strand="+" ref_description="SGN-E228944 [cLEL-29-E3](-)">
      <seq>cgtagactagatcctgtactgggagaatataccatttaaagtattctccgccagagaccgatgaaatcgctgcaaggcttacccagcgctttgatgatacagaagaaaaggtgaagctgcgtctgcacactcaccgtcaaaatgtggaatcagttctctcaatgtacaaagatactatattccaggtggacgggagcgtttccaaagaggaagtatttgctcaaattgatggtgcattaactcaacttcttgaagcaaaggagtgaagatttggaaccgtaatgtcatagagatcaggaaaaatctgcagaatgtaccatgtaatactcaggaggatcatcgaagacaaaagagtaacattgttggttgctatccctcttatacaaatgtatgaaatgtttatgtatatcgtatttgcttccaactatctatgtggatactctctgaaaaaaaaaaaaaaaactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0132E21.2" temp_strand="+" temp_description="C06SLm0132E21.2  AC211087.2 htgs_phase:3 submitted_to_sgn_as:C06SLm0132E21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="44301" stop="46356"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44601" g_stop="44711" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="110" r_length="110" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44712" i_stop="45101" i_length="390">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45102" g_stop="45176" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="185" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45177" i_stop="45788" i_length="612">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45789" g_stop="46045" g_length="257"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="442" r_length="257" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="447" polyA_stop="463"/>
      <MATCH_line gen_id="C06SLm0132E21.2" gen_strand="+" ref_id="SGN-E228944" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>443</cumulative_length_of_scored_exons>
        <coverage percentage="0.953" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0132E21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E228944" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44601" e_stop="44711"/>
          <exon e_start="45102" e_stop="45176"/>
          <exon e_start="45789" e_stop="46045"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTAGACTAGATCCTGTAACTGGGAGAATATACCATTTGAAGTATTCTCCGCCAGAGACCGATGAAATCGCTGCAAGGCTTACCCAGCGCTTTGATGATACAGAAGAAAAGGCATGTTAATGCATGAATACGTACATTATTGTTGCTACAACTGCTGTAGGGCTTTTCCTTTTGTATGAAGCTTTTAAATCACGTAAACTTTTTTAATTCTTATTTGGTGGAAGCCTACCGTTTGTCCCATTGGTCATTTCTTGACCTTCTAATCAAACCATTTTAATCTATTCTCCTCCTGGAAATTTTGTTGCAGGTCTCGAAATTTCCATTTTCAACTAAATCTTTCTTTTAGCTATTTCCTTTATCATTCTTGCTGTCCTTTTCCCTTGCTTACTCAAGTCGCTTTGTAGATAACTGACTTAAGTATAGGTTTCTATAACATTATAAATAATGTTGTGTGATCAGCTTCATTTTTGTCTAATTTCTTTTTCAATTTACCGTTTACAGGTGAAGCTGCGTCTGCACACTCACCGTCAAAATGTGGAATCAGTTCTCTCAATGTACAAAGATACTATATTCCAGGTATTCTTTTTGCCACAGATGTGGTGCAGTTGCTTCACTCGGGAATGCAGATTGAAACACTCATCAGTCACCATCAAAGTGTGGAATCATTCCTTATATACTTGATTCATAGTTTATTGGGTTGTTTGATGGTTTACAAGGTCTTGGTTAACAGGAATATAGTCCATAAAAGACAATGTGGAAGGGACTCGGTGGAAATGGTTCGATGAGAAAGTAGTTTGGTTTTCTATTTGGCAAAAGAACAATGATATGGTTATAAAATTTCGTTGTTTGACATGTAGGTTACAAAATGATTACTTTAAATTATCTTCAGTTCATCCAGGTCATCCTTCCTCATAACAGTTGTAAAACAAAGGAAAGCCAAAGCAAAAGGGCTATACATCCTCTTTTATCTTAAAATTTACTCAATAAGCTAAAGGAAGAGTAAATCCTTTTGAGTATTACATTCATACTAATCAATCTGGGGGGAAATATACTTAATCAAGGACTCCCCTTCCCTCTTCAATGAACAAGGATACTGTATGTTCTTTCTTTCCATACGCGTGCATGATCGTGTTGTTATCATTTCCTGGTGTTAAAACTTCCATCTTCTCTGAGCTATTTTAATTTCAGGTGGACGGGAGCGTTTCCAAAGAGGAAGTATTTGCTCAAATTGATGGTGCATTAACTCAACTTCTTGAAGCAAAGGAGTGAAGATTTGGAACCGTAATGTCATAGAGATCAGGAAAAATCTGCAGAATGTACCATGTAATACTCAGGAGGATCATCGAAGACAAAAGAGTAACATTGTTGGTTGCTATCCCTCTTATACAAATGTATGAAATGTTTATGTATATCGTATTTGCTTCCAACTATCTATGTGGATATTC</genome_strand>
        <mrna_strand>CGTAGACTAGATCCTGT-ACTGGGAGAATATACCATTTAAAGTATTCTCCGCCAGAGACCGATGAAATCGCTGCAAGGCTTACCCAGCGCTTTGATGATACAGAAGAAAAG......................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGCTGCGTCTGCACACTCACCGTCAAAATGTGGAATCAGTTCTCTCAATGTACAAAGATACTATATTCCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGACGGGAGCGTTTCCAAAGAGGAAGTATTTGCTCAAATTGATGGTGCATTAACTCAACTTCTTGAAGCAAAGGAGTGAAGATTTGGAACCGTAATGTCATAGAGATCAGGAAAAATCTGCAGAATGTACCATGTAATACTCAGGAGGATCATCGAAGACAAAAGAGTAACATTGTTGGTTGCTATCCCTCTTATACAAATGTATGAAATGTTTATGTATATCGTATTTGCTTCCAACTATCTATGTGGATACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E228978" ref_strand="+" ref_description="SGN-E228978 [cLEL-29-J22](-)">
      <seq>atcgctgcaaggcttacccagcgctttgatgatacagaagaaaaggtgaagctgcgtctgcacactcaccgtcaaaatgtggaatcagttctctcaatgtacaaagatactatattccaggtggacgggagcgtttccaaagaggaagtatttgctcaaattgatggtgcattaactcaacttcttgaagcaaaggagtgaagatttggaaccgtaatgtcatagagatcaggaaaaatctgcagaatgtaccatgtaatactcaggaggatcatcgaagacaaaagagtaacattgttggttgctatccctcttatacaaatgtatgaaatgtttatgtatatcgtatttgcttccaactatctatgtggatattcattgaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0132E21.2" temp_strand="+" temp_description="C06SLm0132E21.2  AC211087.2 htgs_phase:3 submitted_to_sgn_as:C06SLm0132E21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="44367" stop="46356"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44667" g_stop="44711" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44712" i_stop="45101" i_length="390">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45102" g_stop="45176" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="120" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45177" i_stop="45788" i_length="612">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45789" g_stop="46065" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="397" r_length="277" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0132E21.2" gen_strand="+" ref_id="SGN-E228978" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>397</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0132E21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E228978" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44667" e_stop="44711"/>
          <exon e_start="45102" e_stop="45176"/>
          <exon e_start="45789" e_stop="46065"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCGCTGCAAGGCTTACCCAGCGCTTTGATGATACAGAAGAAAAGGCATGTTAATGCATGAATACGTACATTATTGTTGCTACAACTGCTGTAGGGCTTTTCCTTTTGTATGAAGCTTTTAAATCACGTAAACTTTTTTAATTCTTATTTGGTGGAAGCCTACCGTTTGTCCCATTGGTCATTTCTTGACCTTCTAATCAAACCATTTTAATCTATTCTCCTCCTGGAAATTTTGTTGCAGGTCTCGAAATTTCCATTTTCAACTAAATCTTTCTTTTAGCTATTTCCTTTATCATTCTTGCTGTCCTTTTCCCTTGCTTACTCAAGTCGCTTTGTAGATAACTGACTTAAGTATAGGTTTCTATAACATTATAAATAATGTTGTGTGATCAGCTTCATTTTTGTCTAATTTCTTTTTCAATTTACCGTTTACAGGTGAAGCTGCGTCTGCACACTCACCGTCAAAATGTGGAATCAGTTCTCTCAATGTACAAAGATACTATATTCCAGGTATTCTTTTTGCCACAGATGTGGTGCAGTTGCTTCACTCGGGAATGCAGATTGAAACACTCATCAGTCACCATCAAAGTGTGGAATCATTCCTTATATACTTGATTCATAGTTTATTGGGTTGTTTGATGGTTTACAAGGTCTTGGTTAACAGGAATATAGTCCATAAAAGACAATGTGGAAGGGACTCGGTGGAAATGGTTCGATGAGAAAGTAGTTTGGTTTTCTATTTGGCAAAAGAACAATGATATGGTTATAAAATTTCGTTGTTTGACATGTAGGTTACAAAATGATTACTTTAAATTATCTTCAGTTCATCCAGGTCATCCTTCCTCATAACAGTTGTAAAACAAAGGAAAGCCAAAGCAAAAGGGCTATACATCCTCTTTTATCTTAAAATTTACTCAATAAGCTAAAGGAAGAGTAAATCCTTTTGAGTATTACATTCATACTAATCAATCTGGGGGGAAATATACTTAATCAAGGACTCCCCTTCCCTCTTCAATGAACAAGGATACTGTATGTTCTTTCTTTCCATACGCGTGCATGATCGTGTTGTTATCATTTCCTGGTGTTAAAACTTCCATCTTCTCTGAGCTATTTTAATTTCAGGTGGACGGGAGCGTTTCCAAAGAGGAAGTATTTGCTCAAATTGATGGTGCATTAACTCAACTTCTTGAAGCAAAGGAGTGAAGATTTGGAACCGTAATGTCATAGAGATCAGGAAAAATCTGCAGAATGTACCATGTAATACTCAGGAGGATCATCGAAGACAAAAGAGTAACATTGTTGGTTGCTATCCCTCTTATACAAATGTATGAAATGTTTATGTATATCGTATTTGCTTCCAACTATCTATGTGGATATTCATTGAATCAGATTCAAAGTT</genome_strand>
        <mrna_strand>ATCGCTGCAAGGCTTACCCAGCGCTTTGATGATACAGAAGAAAAG......................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGCTGCGTCTGCACACTCACCGTCAAAATGTGGAATCAGTTCTCTCAATGTACAAAGATACTATATTCCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGACGGGAGCGTTTCCAAAGAGGAAGTATTTGCTCAAATTGATGGTGCATTAACTCAACTTCTTGAAGCAAAGGAGTGAAGATTTGGAACCGTAATGTCATAGAGATCAGGAAAAATCTGCAGAATGTACCATGTAATACTCAGGAGGATCATCGAAGACAAAAGAGTAACATTGTTGGTTGCTATCCCTCTTATACAAATGTATGAAATGTTTATGTATATCGTATTTGCTTCCAACTATCTATGTGGATATTCATTGAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E228848" ref_strand="+" ref_description="SGN-E228848 [cLEL-29-E3](-)">
      <seq>ctgcaaggcttacccagcgctttgatgatacagaagaaaaggtgaagctgggtctgcacactcaccgtcaaaatgtggaatcagttctctcaatgtacaaagatactatattccaggtggacgggagcgtttccaaaaaggaagtatttgctccaattgatggtgcattaactcaacttcttgaagcaaaggagtgaagatttggaaccgtaatgtcataaagatcaggaaaaatctgcagaatgtaccatgtaatactcaggaggatcatcgaagacaaaagagtaacattgttggttgctatccctcttatacaaatgtatgaaatgtttatgtatatcgtatttgcttccaaccatctatgtggatattccttgaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0132E21.2" temp_strand="+" temp_description="C06SLm0132E21.2  AC211087.2 htgs_phase:3 submitted_to_sgn_as:C06SLm0132E21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="44371" stop="46356"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44671" g_stop="44711" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44712" i_stop="45101" i_length="390">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45102" g_stop="45176" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="116" r_length="75" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45177" i_stop="45788" i_length="612">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45789" g_stop="46067" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="395" r_length="279" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0132E21.2" gen_strand="+" ref_id="SGN-E228848" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>395</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0132E21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E228848" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44671" e_stop="44711"/>
          <exon e_start="45102" e_stop="45176"/>
          <exon e_start="45789" e_stop="46067"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCAAGGCTTACCCAGCGCTTTGATGATACAGAAGAAAAGGCATGTTAATGCATGAATACGTACATTATTGTTGCTACAACTGCTGTAGGGCTTTTCCTTTTGTATGAAGCTTTTAAATCACGTAAACTTTTTTAATTCTTATTTGGTGGAAGCCTACCGTTTGTCCCATTGGTCATTTCTTGACCTTCTAATCAAACCATTTTAATCTATTCTCCTCCTGGAAATTTTGTTGCAGGTCTCGAAATTTCCATTTTCAACTAAATCTTTCTTTTAGCTATTTCCTTTATCATTCTTGCTGTCCTTTTCCCTTGCTTACTCAAGTCGCTTTGTAGATAACTGACTTAAGTATAGGTTTCTATAACATTATAAATAATGTTGTGTGATCAGCTTCATTTTTGTCTAATTTCTTTTTCAATTTACCGTTTACAGGTGAAGCTGCGTCTGCACACTCACCGTCAAAATGTGGAATCAGTTCTCTCAATGTACAAAGATACTATATTCCAGGTATTCTTTTTGCCACAGATGTGGTGCAGTTGCTTCACTCGGGAATGCAGATTGAAACACTCATCAGTCACCATCAAAGTGTGGAATCATTCCTTATATACTTGATTCATAGTTTATTGGGTTGTTTGATGGTTTACAAGGTCTTGGTTAACAGGAATATAGTCCATAAAAGACAATGTGGAAGGGACTCGGTGGAAATGGTTCGATGAGAAAGTAGTTTGGTTTTCTATTTGGCAAAAGAACAATGATATGGTTATAAAATTTCGTTGTTTGACATGTAGGTTACAAAATGATTACTTTAAATTATCTTCAGTTCATCCAGGTCATCCTTCCTCATAACAGTTGTAAAACAAAGGAAAGCCAAAGCAAAAGGGCTATACATCCTCTTTTATCTTAAAATTTACTCAATAAGCTAAAGGAAGAGTAAATCCTTTTGAGTATTACATTCATACTAATCAATCTGGGGGGAAATATACTTAATCAAGGACTCCCCTTCCCTCTTCAATGAACAAGGATACTGTATGTTCTTTCTTTCCATACGCGTGCATGATCGTGTTGTTATCATTTCCTGGTGTTAAAACTTCCATCTTCTCTGAGCTATTTTAATTTCAGGTGGACGGGAGCGTTTCCAAAGAGGAAGTATTTGCTCAAATTGATGGTGCATTAACTCAACTTCTTGAAGCAAAGGAGTGAAGATTTGGAACCGTAATGTCATAGAGATCAGGAAAAATCTGCAGAATGTACCATGTAATACTCAGGAGGATCATCGAAGACAAAAGAGTAACATTGTTGGTTGCTATCCCTCTTATACAAATGTATGAAATGTTTATGTATATCGTATTTGCTTCCAACTATCTATGTGGATATTCATTGAATCAGATTCAAAGTTTA</genome_strand>
        <mrna_strand>CTGCAAGGCTTACCCAGCGCTTTGATGATACAGAAGAAAAG......................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGCTGGGTCTGCACACTCACCGTCAAAATGTGGAATCAGTTCTCTCAATGTACAAAGATACTATATTCCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGACGGGAGCGTTTCCAAAAAGGAAGTATTTGCTCCAATTGATGGTGCATTAACTCAACTTCTTGAAGCAAAGGAGTGAAGATTTGGAACCGTAATGTCATAAAGATCAGGAAAAATCTGCAGAATGTACCATGTAATACTCAGGAGGATCATCGAAGACAAAAGAGTAACATTGTTGGTTGCTATCCCTCTTATACAAATGTATGAAATGTTTATGTATATCGTATTTGCTTCCAACCATCTATGTGGATATTCCTTGAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E228882" ref_strand="+" ref_description="SGN-E228882 [cLEL-29-J22](-)">
      <seq>tgcacactcaccgtcaaaatgtggaatcagttctctcaatgtacaaagatactatattccaggtggacgggagcgtttccaaaaaggaagtatttgctcaaattgatggtgcattaactcaacttcttgaagcaaaggagtgaagatttggaaccgtaatgtcatagagatcaggaaaaatctgcagaatgtaccatgtaatactcaggaggatcatcgaagacaaaagagtaacattgttggttgctatccctcttatacaaatgtatgaaatgtttatgtatatcgtatttgcttccaactatctatgtggatattcattgaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0132E21.2" temp_strand="+" temp_description="C06SLm0132E21.2  AC211087.2 htgs_phase:3 submitted_to_sgn_as:C06SLm0132E21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="44815" stop="46356"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45115" g_stop="45176" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45177" i_stop="45788" i_length="612">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45789" g_stop="46065" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="339" r_length="277" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0132E21.2" gen_strand="+" ref_id="SGN-E228882" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>339</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0132E21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E228882" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45115" e_stop="45176"/>
          <exon e_start="45789" e_stop="46065"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCACACTCACCGTCAAAATGTGGAATCAGTTCTCTCAATGTACAAAGATACTATATTCCAGGTATTCTTTTTGCCACAGATGTGGTGCAGTTGCTTCACTCGGGAATGCAGATTGAAACACTCATCAGTCACCATCAAAGTGTGGAATCATTCCTTATATACTTGATTCATAGTTTATTGGGTTGTTTGATGGTTTACAAGGTCTTGGTTAACAGGAATATAGTCCATAAAAGACAATGTGGAAGGGACTCGGTGGAAATGGTTCGATGAGAAAGTAGTTTGGTTTTCTATTTGGCAAAAGAACAATGATATGGTTATAAAATTTCGTTGTTTGACATGTAGGTTACAAAATGATTACTTTAAATTATCTTCAGTTCATCCAGGTCATCCTTCCTCATAACAGTTGTAAAACAAAGGAAAGCCAAAGCAAAAGGGCTATACATCCTCTTTTATCTTAAAATTTACTCAATAAGCTAAAGGAAGAGTAAATCCTTTTGAGTATTACATTCATACTAATCAATCTGGGGGGAAATATACTTAATCAAGGACTCCCCTTCCCTCTTCAATGAACAAGGATACTGTATGTTCTTTCTTTCCATACGCGTGCATGATCGTGTTGTTATCATTTCCTGGTGTTAAAACTTCCATCTTCTCTGAGCTATTTTAATTTCAGGTGGACGGGAGCGTTTCCAAAGAGGAAGTATTTGCTCAAATTGATGGTGCATTAACTCAACTTCTTGAAGCAAAGGAGTGAAGATTTGGAACCGTAATGTCATAGAGATCAGGAAAAATCTGCAGAATGTACCATGTAATACTCAGGAGGATCATCGAAGACAAAAGAGTAACATTGTTGGTTGCTATCCCTCTTATACAAATGTATGAAATGTTTATGTATATCGTATTTGCTTCCAACTATCTATGTGGATATTCATTGAATCAGATTCAAAGTT</genome_strand>
        <mrna_strand>TGCACACTCACCGTCAAAATGTGGAATCAGTTCTCTCAATGTACAAAGATACTATATTCCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGACGGGAGCGTTTCCAAAAAGGAAGTATTTGCTCAAATTGATGGTGCATTAACTCAACTTCTTGAAGCAAAGGAGTGAAGATTTGGAACCGTAATGTCATAGAGATCAGGAAAAATCTGCAGAATGTACCATGTAATACTCAGGAGGATCATCGAAGACAAAAGAGTAACATTGTTGGTTGCTATCCCTCTTATACAAATGTATGAAATGTTTATGTATATCGTATTTGCTTCCAACTATCTATGTGGATATTCATTGAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E318172" ref_strand="+" ref_description="SGN-E318172 [cTOA-29-E18]">
      <seq>actcaccgtcaaaatgtggaatcagttctctcaatgtacaaagatactatattccaggtggacgggagcgtttccaaagaggaagtatttgctcaaattgatggtgcattaactcaacttcttgaagcaaaggagtgaagatttggaaccgtaatgtcatagagatcaggaaaaatctgcagaatgtaccatgtaatactcaggaggatcatcgaagacaaaagagtaacattgttggttgctatccctctcatacaaatgtatgaaatgtttatgtatatcgtatttgcttccaactatctatgtggatattcattgaatcagattcaaagtttactacaaaacttgttttgttgtaaggcccagctcgctagtgatattgttagcttcgagtttacacctatccggctttaagacgtcattagggtgtaagacctgcttatttatgtactcaacatatctcatgtatttttgcctatttgggactcttaatcatggacataaatacccagatttctgattaatccaacttctgaagtttccaatcacaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0132E21.2" temp_strand="+" temp_description="C06SLm0132E21.2  AC211087.2 htgs_phase:3 submitted_to_sgn_as:C06SLm0132E21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="44820" stop="46592"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45120" g_stop="45176" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45177" i_stop="45788" i_length="612">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45789" g_stop="46292" g_length="504"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="561" r_length="504" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0132E21.2" gen_strand="+" ref_id="SGN-E318172" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0132E21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E318172" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45120" e_stop="45176"/>
          <exon e_start="45789" e_stop="46292"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTCACCGTCAAAATGTGGAATCAGTTCTCTCAATGTACAAAGATACTATATTCCAGGTATTCTTTTTGCCACAGATGTGGTGCAGTTGCTTCACTCGGGAATGCAGATTGAAACACTCATCAGTCACCATCAAAGTGTGGAATCATTCCTTATATACTTGATTCATAGTTTATTGGGTTGTTTGATGGTTTACAAGGTCTTGGTTAACAGGAATATAGTCCATAAAAGACAATGTGGAAGGGACTCGGTGGAAATGGTTCGATGAGAAAGTAGTTTGGTTTTCTATTTGGCAAAAGAACAATGATATGGTTATAAAATTTCGTTGTTTGACATGTAGGTTACAAAATGATTACTTTAAATTATCTTCAGTTCATCCAGGTCATCCTTCCTCATAACAGTTGTAAAACAAAGGAAAGCCAAAGCAAAAGGGCTATACATCCTCTTTTATCTTAAAATTTACTCAATAAGCTAAAGGAAGAGTAAATCCTTTTGAGTATTACATTCATACTAATCAATCTGGGGGGAAATATACTTAATCAAGGACTCCCCTTCCCTCTTCAATGAACAAGGATACTGTATGTTCTTTCTTTCCATACGCGTGCATGATCGTGTTGTTATCATTTCCTGGTGTTAAAACTTCCATCTTCTCTGAGCTATTTTAATTTCAGGTGGACGGGAGCGTTTCCAAAGAGGAAGTATTTGCTCAAATTGATGGTGCATTAACTCAACTTCTTGAAGCAAAGGAGTGAAGATTTGGAACCGTAATGTCATAGAGATCAGGAAAAATCTGCAGAATGTACCATGTAATACTCAGGAGGATCATCGAAGACAAAAGAGTAACATTGTTGGTTGCTATCCCTCTTATACAAATGTATGAAATGTTTATGTATATCGTATTTGCTTCCAACTATCTATGTGGATATTCATTGAATCAGATTCAAAGTTTACTACAAAACTTGTTTTGTTGTAAGGCCCAGCTCGCTAGTGATATTGTTAGCTTCGAGTTTACACCTATCCGGCTTTAAGACGTCATTAGGGTGTAAGACCTGCTTATTTATGTACTCAACATATCTCATGTATTTTTGCCTATTTGGGACTCTTAATCATGGACATAAATACCCAGATTTCTGATTAATCCAACTTCTGAAGTTTCCAATCACAGCAGAAAAAAA</genome_strand>
        <mrna_strand>ACTCACCGTCAAAATGTGGAATCAGTTCTCTCAATGTACAAAGATACTATATTCCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGACGGGAGCGTTTCCAAAGAGGAAGTATTTGCTCAAATTGATGGTGCATTAACTCAACTTCTTGAAGCAAAGGAGTGAAGATTTGGAACCGTAATGTCATAGAGATCAGGAAAAATCTGCAGAATGTACCATGTAATACTCAGGAGGATCATCGAAGACAAAAGAGTAACATTGTTGGTTGCTATCCCTCTCATACAAATGTATGAAATGTTTATGTATATCGTATTTGCTTCCAACTATCTATGTGGATATTCATTGAATCAGATTCAAAGTTTACTACAAAACTTGTTTTGTTGTAAGGCCCAGCTCGCTAGTGATATTGTTAGCTTCGAGTTTACACCTATCCGGCTTTAAGACGTCATTAGGGTGTAAGACCTGCTTATTTATGTACTCAACATATCTCATGTATTTTTGCCTATTTGGGACTCTTAATCATGGACATAAATACCCAGATTTCTGATTAATCCAACTTCTGAAGTTTCCAATCACAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E691324" ref_strand="+" ref_description="SGN-E691324 [LH_Ea05N02]">
      <seq>tcgttttaaagaggaggtatttgctcaaattgatggtgcattcattcaacttcttgaagcaaaggattgaagatttggaaccgtaatgtcatagagagcaggaaaaatctgcagaacgtaccatgtaatactgaggaggatcatcgaagacaagagtcacattgttggttgctatccctcttatacaaatgtatgaaatgtttatgtatatcgtatttgcttccaactatctatgtggatattcattgaatcagattcaaagtttactacaaaacttgttttgttgtaaggcctaactcgctagtgatattgttagctttgagcttacacctatgcggctttaagatgcgtcattagggtgtaagacctgcttatttatgtactcaacatatctcatgtatttttgcctatttgggactcttaatcatggacataaatacccagatttctgattaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0132E21.2" temp_strand="+" temp_description="C06SLm0132E21.2  AC211087.2 htgs_phase:3 submitted_to_sgn_as:C06SLm0132E21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="45500" stop="46555"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45799" g_stop="46266" g_length="468"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="467" r_length="467" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0132E21.2" gen_strand="+" ref_id="SGN-E691324" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>468</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0132E21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E691324" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45799" e_stop="46266"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGTTTCCAAAGAGGAAGTATTTGCTCAAATTGATGGTGCATTAACTCAACTTCTTGAAGCAAAGGAGTGAAGATTTGGAACCGTAATGTCATAGAGATCAGGAAAAATCTGCAGAATGTACCATGTAATACTCAGGAGGATCATCGAAGACAAAAGAGTAACATTGTTGGTTGCTATCCCTCTTATACAAATGTATGAAATGTTTATGTATATCGTATTTGCTTCCAACTATCTATGTGGATATTCATTGAATCAGATTCAAAGTTTACTACAAAACTTGTTTTGTTGTAAGGCCCAGCTCGCTAGTGATATTGTTAGCTTCGAGTTTACACCTATCCGGCTTTAAGA--CGTCATTAGGGTGTAAGACCTGCTTATTTATGTACTCAACATATCTCATGTATTTTTGCCTATTTGGGACTCTTAATCATGGACATAAATACCCAGATTTCTGATTAATCCAACTTCTG</genome_strand>
        <mrna_strand>TCGTTT-TAAAGAGGAGGTATTTGCTCAAATTGATGGTGCATTCATTCAACTTCTTGAAGCAAAGGATTGAAGATTTGGAACCGTAATGTCATAGAGAGCAGGAAAAATCTGCAGAACGTACCATGTAATACTGAGGAGGATCATCGAAGAC--AAGAGTCACATTGTTGGTTGCTATCCCTCTTATACAAATGTATGAAATGTTTATGTATATCGTATTTGCTTCCAACTATCTATGTGGATATTCATTGAATCAGATTCAAAGTTTACTACAAAACTTGTTTTGTTGTAAGGCCTAACTCGCTAGTGATATTGTTAGCTTTGAGCTTACACCTATGCGGCTTTAAGATGCGTCATTAGGGTGTAAGACCTGCTTATTTATGTACTCAACATATCTCATGTATTTTTGCCTATTTGGGACTCTTAATCATGGACATAAATACCCAGATTTCTGATTAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E695164" ref_strand="+" ref_description="SGN-E695164 [LH_Ea05N02](-)">
      <seq>ttctaaagaggaggtatttgctcaaattgatggtgcattaactcaacttcttgaagcaaaggattgaagatttggatccgtaatgtcatagagagcaggaaaaatctgcagaatgtaccatgtaatactgaggaggatcatcgaagacaagagtcacattgttggttgctatccctcttatacaaatgtatgaaatgtttatgtatatcgtatttgcttccaactatttatgtggatattcattgaatcagattcaaagtttactacaaaacttgttttgttgtaaggcctaactcgctagtgatattgttagctttgagcttacacctatgcggctttaagatgcgtcattagggtgtaagacctgcttatttatgaagggaacatatctcatgtatttttgcctatttgggactttaatggatggacataaatacccagatttctgattaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0132E21.2" temp_strand="+" temp_description="C06SLm0132E21.2  AC211087.2 htgs_phase:3 submitted_to_sgn_as:C06SLm0132E21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="45503" stop="46555"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45803" g_stop="46266" g_length="464"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="464" r_length="464" r_score="0.920"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0132E21.2" gen_strand="+" ref_id="SGN-E695164" ref_strand="+">
        <total_alignment_score>0.920</total_alignment_score>
        <cumulative_length_of_scored_exons>464</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0132E21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E695164" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45803" e_stop="46266"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCAAAGAGGAAGTATTTGCTCAAATTGATGGTGCATTAACTCAACTTCTTGAAGCAAAGGAGTGAAGATTTGGAACCGTAATGTCATAGAGATCAGGAAAAATCTGCAGAATGTACCATGTAATACTCAGGAGGATCATCGAAGACAAAAGAGTAACATTGTTGGTTGCTATCCCTCTTATACAAATGTATGAAATGTTTATGTATATCGTATTTGCTTCCAACTATCTATGTGGATATTCATTGAATCAGATTCAAAGTTTACTACAAAACTTGTTTTGTTGTAAGGCCCAGCTCGCTAGTGATATTGTTAGCTTCGAGTTTACACCTATCCGGCTTTAAGA--CGTCATTAGGGTGTAAGACCTGCTTATTTATGTACTCAACATATCTCATGTATTTTTGCCTATTTGGGACTCTTAATCATGGACATAAATACCCAGATTTCTGATTAATCCAACTTCTG</genome_strand>
        <mrna_strand>TTCTAAAGAGGAGGTATTTGCTCAAATTGATGGTGCATTAACTCAACTTCTTGAAGCAAAGGATTGAAGATTTGGATCCGTAATGTCATAGAGAGCAGGAAAAATCTGCAGAATGTACCATGTAATACTGAGGAGGATCATCGAAGAC--AAGAGTCACATTGTTGGTTGCTATCCCTCTTATACAAATGTATGAAATGTTTATGTATATCGTATTTGCTTCCAACTATTTATGTGGATATTCATTGAATCAGATTCAAAGTTTACTACAAAACTTGTTTTGTTGTAAGGCCTAACTCGCTAGTGATATTGTTAGCTTTGAGCTTACACCTATGCGGCTTTAAGATGCGTCATTAGGGTGTAAGACCTGCTTATTTATGAAGGGAACATATCTCATGTATTTTTGCCTATTTGGGACTTTAATGGATGGACATAAATACCCAGATTTCTGATTAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E369887" ref_strand="+" ref_description="SGN-E369887 [TUS-26-J11](-)">
      <seq>caaattgatggtgcattaactcaacttcttgaagcaaaggagtgaagatttggaaccgtaatgtcatagagatcaggaaaaatctgcagaatgtaccatgtaatactcaggaggatcatcgaagacaaaagagtaacattgttggttgctatccctcttatacaaatgtatgaaatgtttatgtatatcgtatttgcttccaactatctatgtggatattcattgaatcagattcaaagtttactacaaaacttgttttgttgtaaggcccagctcgctagtgatattgttagcttcgagtttacacctatccggctttaagacgtcattagggtgtaagacctgcttatttatgtactcaacatatctcatgtaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0132E21.2" temp_strand="+" temp_description="C06SLm0132E21.2  AC211087.2 htgs_phase:3 submitted_to_sgn_as:C06SLm0132E21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="45525" stop="46499"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45825" g_stop="46209" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="385" r_length="385" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0132E21.2" gen_strand="+" ref_id="SGN-E369887" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>385</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0132E21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E369887" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45825" e_stop="46209"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATTGATGGTGCATTAACTCAACTTCTTGAAGCAAAGGAGTGAAGATTTGGAACCGTAATGTCATAGAGATCAGGAAAAATCTGCAGAATGTACCATGTAATACTCAGGAGGATCATCGAAGACAAAAGAGTAACATTGTTGGTTGCTATCCCTCTTATACAAATGTATGAAATGTTTATGTATATCGTATTTGCTTCCAACTATCTATGTGGATATTCATTGAATCAGATTCAAAGTTTACTACAAAACTTGTTTTGTTGTAAGGCCCAGCTCGCTAGTGATATTGTTAGCTTCGAGTTTACACCTATCCGGCTTTAAGACGTCATTAGGGTGTAAGACCTGCTTATTTATGTACTCAACATATCTCATGTATTTTTGCCTA</genome_strand>
        <mrna_strand>CAAATTGATGGTGCATTAACTCAACTTCTTGAAGCAAAGGAGTGAAGATTTGGAACCGTAATGTCATAGAGATCAGGAAAAATCTGCAGAATGTACCATGTAATACTCAGGAGGATCATCGAAGACAAAAGAGTAACATTGTTGGTTGCTATCCCTCTTATACAAATGTATGAAATGTTTATGTATATCGTATTTGCTTCCAACTATCTATGTGGATATTCATTGAATCAGATTCAAAGTTTACTACAAAACTTGTTTTGTTGTAAGGCCCAGCTCGCTAGTGATATTGTTAGCTTCGAGTTTACACCTATCCGGCTTTAAGACGTCATTAGGGTGTAAGACCTGCTTATTTATGTACTCAACATATCTCATGTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E261075" ref_strand="+" ref_description="SGN-E261075 [cLEG-65-G15]">
      <seq>gagtacttactcgtcgtgcaagcctttacagagattgagggtcagtaagaatcaactttctgggaaaattcccagtgatgtatggggacttccaaatgtactgatggtggatttcagtgataacgaattcagtggaactatgtccccggaaattggggctgctactagcctgaatcagttggtattatcaaataacagattttcaggtgagcttccaaaagaacttgggaaactcacacagttggaaaggctttacttggataacaataacttctcgggtgcaataccttctgaacttggaaaactaaagcaaatttcatctttgcatttggagaaaaactcattctccgggactatcccatcagaattgggtgaattttctaggcttgcagacctgaatcttgcttcaaatcttcttacaggtagcattcccaattccttatcaataatgacctctttgaactctctgaatctttcacacaacagactcactggtacaataccaactagcttggacaatctgaagctgtcttcattggatctctctaacaaccagctatcaggagaagtatcattagatcttttaacgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0132E21.2" temp_strand="-" temp_description="C06SLm0132E21.2  AC211087.2 htgs_phase:3 submitted_to_sgn_as:C06SLm0132E21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="48653" stop="47462"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48353" g_stop="47762" g_length="592"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="592" r_length="592" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0132E21.2" gen_strand="-" ref_id="SGN-E261075" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>592</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0132E21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E261075" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48353" e_stop="47762"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGTACTTACTCGTCGTGCAAGCCTTTACAGAGATTGAGGGTCAGTAAGAATCAACTTTCTGGGAAAATTCCCAGTGATGTATGGGGACTTCCAAATGTACTGATGGTGGATTTCAGTGATAACGAATTCAGTGGAACTATGTCCCCGGAAATTGGGGCTGCTACTAGCCTGAATCAGTTGGTATTATCAAATAACAGATTTTCAGGTGAGCTTCCAAAAGAACTTGGGAAACTCACACAGTTGGAAAGGCTTTACTTGGATAACAATAACTTCTCGGGTGCAATACCTTCTGAACTTGGAAAACTAAAGCAAATTTCATCTTTGCATTTGGAGAAAAACTCATTCTCCGGGACTATCCCATCAGAATTGGGTGAATTTTCTAGGCTTGCAGACCTGAATCTTGCTTCAAATCTTCTTACAGGTAGCATTCCCAATTCCTTATCAATAATGACCTCTTTGAACTCTCTGAATCTTTCACACAACAGACTCACTGGTACAATACCAACTAGCTTGGACAATCTGAAGCTGTCTTCATTGGATCTCTCTAACAACCAGCTATCAGGAGAGGTATCATTAGATCTTTTAACGCTG</genome_strand>
        <mrna_strand>GAGTACTTACTCGTCGTGCAAGCCTTTACAGAGATTGAGGGTCAGTAAGAATCAACTTTCTGGGAAAATTCCCAGTGATGTATGGGGACTTCCAAATGTACTGATGGTGGATTTCAGTGATAACGAATTCAGTGGAACTATGTCCCCGGAAATTGGGGCTGCTACTAGCCTGAATCAGTTGGTATTATCAAATAACAGATTTTCAGGTGAGCTTCCAAAAGAACTTGGGAAACTCACACAGTTGGAAAGGCTTTACTTGGATAACAATAACTTCTCGGGTGCAATACCTTCTGAACTTGGAAAACTAAAGCAAATTTCATCTTTGCATTTGGAGAAAAACTCATTCTCCGGGACTATCCCATCAGAATTGGGTGAATTTTCTAGGCTTGCAGACCTGAATCTTGCTTCAAATCTTCTTACAGGTAGCATTCCCAATTCCTTATCAATAATGACCTCTTTGAACTCTCTGAATCTTTCACACAACAGACTCACTGGTACAATACCAACTAGCTTGGACAATCTGAAGCTGTCTTCATTGGATCTCTCTAACAACCAGCTATCAGGAGAAGTATCATTAGATCTTTTAACGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E551523" ref_strand="+" ref_description="SGN-E551523 [TUS-55-M5]">
      <seq>ggtcaataagaatcaactttctgggaaaattcccagtgatgtatggggacttccaaatgtactgatggtggatttcagtgataacgaattcagtggaactatgtccccggaaattggggctgctactagcctgaatcagttggtattatcaaataacagattttcaggtgagcttccaaaagaacttgggaaactcacacagttggaaaggctttacttggataacaataacttctcgggtgcaataccttctgaacttggaaaactaaagcaaatttcatctttgcatttggagaaaaactcattctccgggactatcccatcagaattgggtgaattttctaggcttgcagacctgaatcttgcttcaaatcttcttacaggtagcattcccaattccttatcaataatgacctctttgaactctctgaatcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0132E21.2" temp_strand="-" temp_description="C06SLm0132E21.2  AC211087.2 htgs_phase:3 submitted_to_sgn_as:C06SLm0132E21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="48614" stop="47578"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48314" g_stop="47878" g_length="437"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="437" r_length="437" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0132E21.2" gen_strand="-" ref_id="SGN-E551523" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>437</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0132E21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E551523" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48314" e_stop="47878"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTCAGTAAGAATCAACTTTCTGGGAAAATTCCCAGTGATGTATGGGGACTTCCAAATGTACTGATGGTGGATTTCAGTGATAACGAATTCAGTGGAACTATGTCCCCGGAAATTGGGGCTGCTACTAGCCTGAATCAGTTGGTATTATCAAATAACAGATTTTCAGGTGAGCTTCCAAAAGAACTTGGGAAACTCACACAGTTGGAAAGGCTTTACTTGGATAACAATAACTTCTCGGGTGCAATACCTTCTGAACTTGGAAAACTAAAGCAAATTTCATCTTTGCATTTGGAGAAAAACTCATTCTCCGGGACTATCCCATCAGAATTGGGTGAATTTTCTAGGCTTGCAGACCTGAATCTTGCTTCAAATCTTCTTACAGGTAGCATTCCCAATTCCTTATCAATAATGACCTCTTTGAACTCTCTGAATCTTT</genome_strand>
        <mrna_strand>GGTCAATAAGAATCAACTTTCTGGGAAAATTCCCAGTGATGTATGGGGACTTCCAAATGTACTGATGGTGGATTTCAGTGATAACGAATTCAGTGGAACTATGTCCCCGGAAATTGGGGCTGCTACTAGCCTGAATCAGTTGGTATTATCAAATAACAGATTTTCAGGTGAGCTTCCAAAAGAACTTGGGAAACTCACACAGTTGGAAAGGCTTTACTTGGATAACAATAACTTCTCGGGTGCAATACCTTCTGAACTTGGAAAACTAAAGCAAATTTCATCTTTGCATTTGGAGAAAAACTCATTCTCCGGGACTATCCCATCAGAATTGGGTGAATTTTCTAGGCTTGCAGACCTGAATCTTGCTTCAAATCTTCTTACAGGTAGCATTCCCAATTCCTTATCAATAATGACCTCTTTGAACTCTCTGAATCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E689024" ref_strand="+" ref_description="SGN-E689024 [t3_tus_55_M05]">
      <seq>ggtcaataagaatcaactttctgggaaaattcccagtgatgtatggggacttccaaatgtactgatggtggatttcagtgataacgaattcagtggaactatgtccccggaaattggggctgctactagcctgaatcagttggtattatcaaataacagattttcaggtgagcttccaaaagaacttgggaaactcacacagttggaaaggctttacttggataacaataacttctcgggtgcaataccttctgaacttggaaaactaaagcaaatttcatctttgcatttggagaaaaactcattctccgggactatcccatcagaattgggtgaattttctaggcttgcagacctgaatcttgcttcaaatcttcttacaggtagcattcccaattccttatcaataatgacctctttgaactctctgaatcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0132E21.2" temp_strand="-" temp_description="C06SLm0132E21.2  AC211087.2 htgs_phase:3 submitted_to_sgn_as:C06SLm0132E21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="48614" stop="47578"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48314" g_stop="47878" g_length="437"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="437" r_length="437" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0132E21.2" gen_strand="-" ref_id="SGN-E689024" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>437</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0132E21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E689024" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48314" e_stop="47878"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTCAGTAAGAATCAACTTTCTGGGAAAATTCCCAGTGATGTATGGGGACTTCCAAATGTACTGATGGTGGATTTCAGTGATAACGAATTCAGTGGAACTATGTCCCCGGAAATTGGGGCTGCTACTAGCCTGAATCAGTTGGTATTATCAAATAACAGATTTTCAGGTGAGCTTCCAAAAGAACTTGGGAAACTCACACAGTTGGAAAGGCTTTACTTGGATAACAATAACTTCTCGGGTGCAATACCTTCTGAACTTGGAAAACTAAAGCAAATTTCATCTTTGCATTTGGAGAAAAACTCATTCTCCGGGACTATCCCATCAGAATTGGGTGAATTTTCTAGGCTTGCAGACCTGAATCTTGCTTCAAATCTTCTTACAGGTAGCATTCCCAATTCCTTATCAATAATGACCTCTTTGAACTCTCTGAATCTTT</genome_strand>
        <mrna_strand>GGTCAATAAGAATCAACTTTCTGGGAAAATTCCCAGTGATGTATGGGGACTTCCAAATGTACTGATGGTGGATTTCAGTGATAACGAATTCAGTGGAACTATGTCCCCGGAAATTGGGGCTGCTACTAGCCTGAATCAGTTGGTATTATCAAATAACAGATTTTCAGGTGAGCTTCCAAAAGAACTTGGGAAACTCACACAGTTGGAAAGGCTTTACTTGGATAACAATAACTTCTCGGGTGCAATACCTTCTGAACTTGGAAAACTAAAGCAAATTTCATCTTTGCATTTGGAGAAAAACTCATTCTCCGGGACTATCCCATCAGAATTGGGTGAATTTTCTAGGCTTGCAGACCTGAATCTTGCTTCAAATCTTCTTACAGGTAGCATTCCCAATTCCTTATCAATAATGACCTCTTTGAACTCTCTGAATCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E706915" ref_strand="+" ref_description="SGN-E706915 [FA31CB09]">
      <seq>gcaagctgaaaaaattatggaaaattgagctgtttcagaataagttgacaggggaacttcctgtagaactggcagagctctctcttttgcaggaatttgatatctctagcaaccatatgtatgggaagctgcctccagaaattgggaacctgaagaagttaacagtttttcatgtattcatgaataacttctctggtgaaattcctcctggttttggagatatgcagcatcttaatggcttttccgtgtacaggaacaatttttctggggcatttccagcaaatcttggtcggttttcgcccctgaatagcatagacatatctgaaaacaagtttactggtggattcccaaagtacttgtgccaaaatgggaacctgcagtttttgctagctattgagaacagtttctcaggggagtttccgagtacttactcgtcgtgcaagcctttacagagattgagggtcagtaagaatcaactttctgggaaaattcccagtgatgtatggggacttccaaatgtactgatggtggatttcagtgataacgaattcagtggaactatgtccccggaaattggggctgctactaccctgaatcagttggtattatcaaataacagattttcaggtgagcttccaaaagaacttgggaaactcccacagttggaaaggctttacttggataacaataacttctcgggtgcaataccttctgaacttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0132E21.2" temp_strand="-" temp_description="C06SLm0132E21.2  AC211087.2 htgs_phase:3 submitted_to_sgn_as:C06SLm0132E21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="49074" stop="47754"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48774" g_stop="48054" g_length="721"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="721" r_length="721" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0132E21.2" gen_strand="-" ref_id="SGN-E706915" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>721</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0132E21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E706915" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48774" e_stop="48054"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGCTGAAAAAATTATGGAAAATTGAGCTGTTTCAGAATAAGTTGACAGGGGAACTTCCTGTAGAACTGGCAGAGCTCTCTCTTTTGCAGGAATTTGATATCTCTAGCAACCATATGTATGGGAAGCTGCCTCCAGAAATTGGGAACCTGAAGAAGTTAACAGTTTTTCATGTATTCATGAATAACTTCTCTGGTGAAATTCCTCCTGGTTTTGGAGATATGCAGCATCTTAATGGCTTTTCCGTGTACAGGAACAATTTTTCTGGGGCATTTCCAGCAAATCTTGGTCGGTTTTCGCCCCTGAATAGCATAGACATATCTGAAAACAAGTTTACTGGTGGATTCCCAAAGTACTTGTGCCAAAATGGGAACCTGCAGTTTTTGCTAGCTATTGAGAACAGTTTCTCAGGGGAGTTTCCGAGTACTTACTCGTCGTGCAAGCCTTTACAGAGATTGAGGGTCAGTAAGAATCAACTTTCTGGGAAAATTCCCAGTGATGTATGGGGACTTCCAAATGTACTGATGGTGGATTTCAGTGATAACGAATTCAGTGGAACTATGTCCCCGGAAATTGGGGCTGCTACTAGCCTGAATCAGTTGGTATTATCAAATAACAGATTTTCAGGTGAGCTTCCAAAAGAACTTGGGAAACTCACACAGTTGGAAAGGCTTTACTTGGATAACAATAACTTCTCGGGTGCAATACCTTCTGAACTTGG</genome_strand>
        <mrna_strand>GCAAGCTGAAAAAATTATGGAAAATTGAGCTGTTTCAGAATAAGTTGACAGGGGAACTTCCTGTAGAACTGGCAGAGCTCTCTCTTTTGCAGGAATTTGATATCTCTAGCAACCATATGTATGGGAAGCTGCCTCCAGAAATTGGGAACCTGAAGAAGTTAACAGTTTTTCATGTATTCATGAATAACTTCTCTGGTGAAATTCCTCCTGGTTTTGGAGATATGCAGCATCTTAATGGCTTTTCCGTGTACAGGAACAATTTTTCTGGGGCATTTCCAGCAAATCTTGGTCGGTTTTCGCCCCTGAATAGCATAGACATATCTGAAAACAAGTTTACTGGTGGATTCCCAAAGTACTTGTGCCAAAATGGGAACCTGCAGTTTTTGCTAGCTATTGAGAACAGTTTCTCAGGGGAGTTTCCGAGTACTTACTCGTCGTGCAAGCCTTTACAGAGATTGAGGGTCAGTAAGAATCAACTTTCTGGGAAAATTCCCAGTGATGTATGGGGACTTCCAAATGTACTGATGGTGGATTTCAGTGATAACGAATTCAGTGGAACTATGTCCCCGGAAATTGGGGCTGCTACTACCCTGAATCAGTTGGTATTATCAAATAACAGATTTTCAGGTGAGCTTCCAAAAGAACTTGGGAAACTCCCACAGTTGGAAAGGCTTTACTTGGATAACAATAACTTCTCGGGTGCAATACCTTCTGAACTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E355524" ref_strand="-" ref_description="SGN-E355524 [cTOS-25-K16]">
      <seq>aaacctattcacaaatgatatatccaattcctgataggagcttgtggaatgaggctggggagggtacagacggtgggggagcaaatgttgatattataatttgaccaccaaaaacccgacgtcctcctggcaggcccaaaaagaaggttcttcgcatagagagtttcaagcgtccaaagagagtcgttcaatgtggtcgatgccatatgttgggacattttcagaaaaaatgctcgttgcctagttaaatccttggttagttgccagctttctttgctcatgccgaaaactttcattaaagagtctcaagctgtatgtattttagtaatggcttagtcatgagattgttacttggcctttgccttatcagttttgcagttgtctttgaatatatcaggaacatattgtgtaccttgtacttcataatactatatggctaattgagttcccatcgaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0132E21.2" temp_strand="+" temp_description="C06SLm0132E21.2  AC211087.2 htgs_phase:3 submitted_to_sgn_as:C06SLm0132E21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="64774" stop="65829"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65074" g_stop="65528" g_length="455"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="455" r_length="455" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="456" polyA_stop="488"/>
      <MATCH_line gen_id="C06SLm0132E21.2" gen_strand="+" ref_id="SGN-E355524" ref_strand="-">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>455</cumulative_length_of_scored_exons>
        <coverage percentage="0.932" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0132E21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E355524" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="65074" e_stop="65528"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACCTATTCACAAATGATATATCCAATTCCTGATAGGAGCTTGTGGAATGAGGCTGGGGAGGGTACAGACGGTGGGGGAGCAAATGTTGATATTATAATTCGACCACCAAAAACCCGACGTCCTCCTGGCAGGCCCAAAAAGAAGGTTCTTCGCATAGAGAGTTTCAAGCGTCCAAAGAGAGTCGTTCAATGTGGTCGATGCCATATGTTGGGACATTCTCAGAAAAAATGCTCGTTGCCTAGTTAAATCCTTGGTTAGTTGCCAGCTTTCTTTGCTCATGCCGAAAACTTTCATTAAAGAGTCTCAAGCTGTATGTATTTTAGTAATGGCTTAGTCATGAGATTGTTACTTGGCCTCTGCCTTATCAGTTCTGCAGTTGTCTTTGAATATATCAGGAACATATTGTGTACCTTGTACTTCATAATACTATATGGCTAATTGAGTTCCCATCGA</genome_strand>
        <mrna_strand>AAACCTATTCACAAATGATATATCCAATTCCTGATAGGAGCTTGTGGAATGAGGCTGGGGAGGGTACAGACGGTGGGGGAGCAAATGTTGATATTATAATTTGACCACCAAAAACCCGACGTCCTCCTGGCAGGCCCAAAAAGAAGGTTCTTCGCATAGAGAGTTTCAAGCGTCCAAAGAGAGTCGTTCAATGTGGTCGATGCCATATGTTGGGACATTTTCAGAAAAAATGCTCGTTGCCTAGTTAAATCCTTGGTTAGTTGCCAGCTTTCTTTGCTCATGCCGAAAACTTTCATTAAAGAGTCTCAAGCTGTATGTATTTTAGTAATGGCTTAGTCATGAGATTGTTACTTGGCCTTTGCCTTATCAGTTTTGCAGTTGTCTTTGAATATATCAGGAACATATTGTGTACCTTGTACTTCATAATACTATATGGCTAATTGAGTTCCCATCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E543617" ref_strand="+" ref_description="SGN-E543617 [TUS-65-I11](-)">
      <seq>ctcccattcatttggcaagtgcctgaacaatgttggaggtctagacaaggcactctcattttatcctgagtgtatcaaggattctaatgaagcacccaaatggtgggatcatttgcattgcgcaatgtcacattacaagtttgtccttgcgattgagaaccccaagccagaaagttatgtaccagagaagttattttacgcactggactctggtgcagtccccatttattttggtgccccgaatgtctgggactttgtacctccacattcaataattgatggaagcaagtttagctctttggaggaattggcctcgtacgttaaggccattgctaataatccagtagcttatgcagagtcccatgcttggagaagatgtggcgtgctgggtaactatagaaaaacacgggcagctagtctggatcccttcccttgcaggttatgtgaagccatcagtaaaagaaatggaagaaatgcaaaagctttttgactattcaccagcaaagctccagggtactaggctttaaattgtgtacttagatcaactagtgttgtttctaaacagtgcatgtcttgttaggacttaggatatagtggcttgtagagatctcaaacccttacaaattaatactacataaattttggtctaacaaaattgggcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0132E21.2" temp_strand="-" temp_description="C06SLm0132E21.2  AC211087.2 htgs_phase:3 submitted_to_sgn_as:C06SLm0132E21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="67024" stop="65763"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66724" g_stop="66064" g_length="661"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="661" r_length="661" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="662" polyA_stop="707"/>
      <MATCH_line gen_id="C06SLm0132E21.2" gen_strand="-" ref_id="SGN-E543617" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>661</cumulative_length_of_scored_exons>
        <coverage percentage="0.935" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0132E21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E543617" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66724" e_stop="66064"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCCATTCATTTGGCAAGTGCCTGAACAATGTTGGAGGTCTAGACAAGGCACTCTCATTTTATCCTGAGTGTATCAAGGATTCTAATGAAGCACCCAAATGGTGGGATCATTTGCATTGCGCAATGTCACATTACAAGTTTGTCCTTGCGATTGAGAACACCAAGACAGAAAGTTATGTAACAGAGAAGTTATTTTACGCACTGGACTCTGGTGCAGTCCCCATTTATTTTGGTGCCCCGAATGTCTGGGACTTTGTACCTCCACATTCAATAATTGATGGAAGCAAGTTTAGCTCTTTGGAGGAATTGGCCTCGTACGTTAAGGCCATTGCTAATAATCCAGTAGCTTATGCAGAGTACCATGCTTGGAGAAGATGTGGCGTGCTGGGTAACTATAGAAAAACACGGGCAGCTAGTCTGGATACCTTGCCTTGCAGGTTATGTGAAGCCATCAGTAAAAGAAATGGAAGAAATGCAAAAGCCTCTTGACTATTCAACAGCAAAGCTACAGGGTACTAGGCTTTAAATTGTGTACTTAGATCAACTAGTGTTGTTTCTAAACAGTGCATGTCTTGTTAGGACTTAGGATATAGTGGCTTGTAGAGATCTCAAACCCTTACAAATTAATACTACATAAATTTTGGTCTAACAAAATTGAGC</genome_strand>
        <mrna_strand>CTCCCATTCATTTGGCAAGTGCCTGAACAATGTTGGAGGTCTAGACAAGGCACTCTCATTTTATCCTGAGTGTATCAAGGATTCTAATGAAGCACCCAAATGGTGGGATCATTTGCATTGCGCAATGTCACATTACAAGTTTGTCCTTGCGATTGAGAACCCCAAGCCAGAAAGTTATGTACCAGAGAAGTTATTTTACGCACTGGACTCTGGTGCAGTCCCCATTTATTTTGGTGCCCCGAATGTCTGGGACTTTGTACCTCCACATTCAATAATTGATGGAAGCAAGTTTAGCTCTTTGGAGGAATTGGCCTCGTACGTTAAGGCCATTGCTAATAATCCAGTAGCTTATGCAGAGTCCCATGCTTGGAGAAGATGTGGCGTGCTGGGTAACTATAGAAAAACACGGGCAGCTAGTCTGGATCCCTTCCCTTGCAGGTTATGTGAAGCCATCAGTAAAAGAAATGGAAGAAATGCAAAAGCTTTTTGACTATTCACCAGCAAAGCTCCAGGGTACTAGGCTTTAAATTGTGTACTTAGATCAACTAGTGTTGTTTCTAAACAGTGCATGTCTTGTTAGGACTTAGGATATAGTGGCTTGTAGAGATCTCAAACCCTTACAAATTAATACTACATAAATTTTGGTCTAACAAAATTGGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E553136" ref_strand="+" ref_description="SGN-E553136 [cTSB-1-L19]">
      <seq>agcaagtttagctctttggaggaattggcctcgtacgttaaggccattgctaataatccagtagcttatgcagagtaccatgcttggagaagatgtggcgtgctgggtaactatagaaaaacacgggcagctagtctggataccttgccttgcaggttatgtgaagccatcagtaaaagaaatggaagaaatgcaaaagcctcttgactattcaacagcaaagctacagggtactaggctttaaattgtgtacttagatcaactagtgttgtttctaaacagtgcatgtcttgttaggacttaggatatagtggcttgtagagatctcaaacccttacaaattaatactacataaattttggtctaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0132E21.2" temp_strand="-" temp_description="C06SLm0132E21.2  AC211087.2 htgs_phase:3 submitted_to_sgn_as:C06SLm0132E21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="66741" stop="65770"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66441" g_stop="66071" g_length="371"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="371" r_length="371" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="372" polyA_stop="395"/>
      <MATCH_line gen_id="C06SLm0132E21.2" gen_strand="-" ref_id="SGN-E553136" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>371</cumulative_length_of_scored_exons>
        <coverage percentage="0.939" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0132E21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E553136" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66441" e_stop="66071"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAAGTTTAGCTCTTTGGAGGAATTGGCCTCGTACGTTAAGGCCATTGCTAATAATCCAGTAGCTTATGCAGAGTACCATGCTTGGAGAAGATGTGGCGTGCTGGGTAACTATAGAAAAACACGGGCAGCTAGTCTGGATACCTTGCCTTGCAGGTTATGTGAAGCCATCAGTAAAAGAAATGGAAGAAATGCAAAAGCCTCTTGACTATTCAACAGCAAAGCTACAGGGTACTAGGCTTTAAATTGTGTACTTAGATCAACTAGTGTTGTTTCTAAACAGTGCATGTCTTGTTAGGACTTAGGATATAGTGGCTTGTAGAGATCTCAAACCCTTACAAATTAATACTACATAAATTTTGGTCTAACAAA</genome_strand>
        <mrna_strand>AGCAAGTTTAGCTCTTTGGAGGAATTGGCCTCGTACGTTAAGGCCATTGCTAATAATCCAGTAGCTTATGCAGAGTACCATGCTTGGAGAAGATGTGGCGTGCTGGGTAACTATAGAAAAACACGGGCAGCTAGTCTGGATACCTTGCCTTGCAGGTTATGTGAAGCCATCAGTAAAAGAAATGGAAGAAATGCAAAAGCCTCTTGACTATTCAACAGCAAAGCTACAGGGTACTAGGCTTTAAATTGTGTACTTAGATCAACTAGTGTTGTTTCTAAACAGTGCATGTCTTGTTAGGACTTAGGATATAGTGGCTTGTAGAGATCTCAAACCCTTACAAATTAATACTACATAAATTTTGGTCTAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E553942" ref_strand="+" ref_description="SGN-E553942 [cTSC-2-L19]">
      <seq>agcaagtttagctctttggaggaattggcctcgtacgttaaggccattgctaataatccagtagcttatgcagagtaccatgcttggagaagatgtggcgtgctgggtaactatagaaaaacacgggcagctagtctggataccttgccttgcaggttatgtgaagccatcagtaaaagaaatggaagaaatgcaaaagcctcttgactattcaacagcaaagctacagggtactaggctttaaattgtgtacttagatcaactagtgttgtttctaaacagtgcatgtcttgttaggacttaggatatagtggcttgtagagatctcaaacccttacaaattaatactacataaattttggtctaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0132E21.2" temp_strand="-" temp_description="C06SLm0132E21.2  AC211087.2 htgs_phase:3 submitted_to_sgn_as:C06SLm0132E21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="66741" stop="65770"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66441" g_stop="66071" g_length="371"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="371" r_length="371" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="372" polyA_stop="394"/>
      <MATCH_line gen_id="C06SLm0132E21.2" gen_strand="-" ref_id="SGN-E553942" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>371</cumulative_length_of_scored_exons>
        <coverage percentage="0.942" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0132E21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E553942" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66441" e_stop="66071"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAAGTTTAGCTCTTTGGAGGAATTGGCCTCGTACGTTAAGGCCATTGCTAATAATCCAGTAGCTTATGCAGAGTACCATGCTTGGAGAAGATGTGGCGTGCTGGGTAACTATAGAAAAACACGGGCAGCTAGTCTGGATACCTTGCCTTGCAGGTTATGTGAAGCCATCAGTAAAAGAAATGGAAGAAATGCAAAAGCCTCTTGACTATTCAACAGCAAAGCTACAGGGTACTAGGCTTTAAATTGTGTACTTAGATCAACTAGTGTTGTTTCTAAACAGTGCATGTCTTGTTAGGACTTAGGATATAGTGGCTTGTAGAGATCTCAAACCCTTACAAATTAATACTACATAAATTTTGGTCTAACAAA</genome_strand>
        <mrna_strand>AGCAAGTTTAGCTCTTTGGAGGAATTGGCCTCGTACGTTAAGGCCATTGCTAATAATCCAGTAGCTTATGCAGAGTACCATGCTTGGAGAAGATGTGGCGTGCTGGGTAACTATAGAAAAACACGGGCAGCTAGTCTGGATACCTTGCCTTGCAGGTTATGTGAAGCCATCAGTAAAAGAAATGGAAGAAATGCAAAAGCCTCTTGACTATTCAACAGCAAAGCTACAGGGTACTAGGCTTTAAATTGTGTACTTAGATCAACTAGTGTTGTTTCTAAACAGTGCATGTCTTGTTAGGACTTAGGATATAGTGGCTTGTAGAGATCTCAAACCCTTACAAATTAATACTACATAAATTTTGGTCTAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E217434" ref_strand="+" ref_description="SGN-E217434 [cLEL-21-N5](-)">
      <seq>gttaaggccattgctaataatccagtagcttatgcagagtaccatgcttggagaagatgtggcgtgctgggtaactatagaaaaacacgggcagctagtctggataccttgccttgcaggttatgtgaagccatcagtaaaagaaatggaagaaatgcaaaagcctcttgactattcaacagcaaagctacagggtactaggctttaaattgtgtacttagatcaactagtgttgtttctaaacagtgcatgtcttgttaggacttaggatatagtggcttgtagagatctcaaacccttacaaattaatactacataaattttggtctaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0132E21.2" temp_strand="-" temp_description="C06SLm0132E21.2  AC211087.2 htgs_phase:3 submitted_to_sgn_as:C06SLm0132E21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="66705" stop="65770"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66405" g_stop="66071" g_length="335"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="335" r_length="335" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="336" polyA_stop="346"/>
      <MATCH_line gen_id="C06SLm0132E21.2" gen_strand="-" ref_id="SGN-E217434" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>335</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0132E21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E217434" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66405" e_stop="66071"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTAAGGCCATTGCTAATAATCCAGTAGCTTATGCAGAGTACCATGCTTGGAGAAGATGTGGCGTGCTGGGTAACTATAGAAAAACACGGGCAGCTAGTCTGGATACCTTGCCTTGCAGGTTATGTGAAGCCATCAGTAAAAGAAATGGAAGAAATGCAAAAGCCTCTTGACTATTCAACAGCAAAGCTACAGGGTACTAGGCTTTAAATTGTGTACTTAGATCAACTAGTGTTGTTTCTAAACAGTGCATGTCTTGTTAGGACTTAGGATATAGTGGCTTGTAGAGATCTCAAACCCTTACAAATTAATACTACATAAATTTTGGTCTAACAAA</genome_strand>
        <mrna_strand>GTTAAGGCCATTGCTAATAATCCAGTAGCTTATGCAGAGTACCATGCTTGGAGAAGATGTGGCGTGCTGGGTAACTATAGAAAAACACGGGCAGCTAGTCTGGATACCTTGCCTTGCAGGTTATGTGAAGCCATCAGTAAAAGAAATGGAAGAAATGCAAAAGCCTCTTGACTATTCAACAGCAAAGCTACAGGGTACTAGGCTTTAAATTGTGTACTTAGATCAACTAGTGTTGTTTCTAAACAGTGCATGTCTTGTTAGGACTTAGGATATAGTGGCTTGTAGAGATCTCAAACCCTTACAAATTAATACTACATAAATTTTGGTCTAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E744710" ref_strand="+" ref_description="SGN-E744710 [GI|18477219]">
      <seq>taaacagtatgcttatattagtcttccatgacaatattaggtcgaacaatcaaacaattttactaatctaaccaccggtagatgaaaactgccccttcaagactaccaattatcaatttcagatcgattattttgataaccccttcccctctctctccttgagtgaccaagggagggagagagagaaaaaaaaaaggtgattttttttgtgtattcttgaactgaaaaatgcaattgaaatctgtcaacacatttgcaatcacaatcatgttgggttttacacttatcattctattcttctctggatttcttgatttcccacttcacacttcttcttcaatcccatcaacgaaaaatcaaatcttgaccaccatctcagtttccgagcccgacccttttagtaacttgttgagcacttttaagaaatgggattctcaagtgggttgtgctaagtttaggggggaacataaagggttattaggaaatgggttgttgttggattcttcttctggttctttgcaaaatgttgatgatggtgagttgaagtgtaatgagctaaagatggatcatgtgagtgtattagttaaagggtggacttggattcctgataatttggataatttgtactcttgtcggtgtgggcttagctgtttgtggactaaatcttcggttgttgctgataaacctgatgctttgttgtttgagacagctactcctcctgttgagagacgtcgaggtgatccattacgtgtatacatggatcttgaagctggtagaaagaaatcagggtatgaggatatatttattggctatcatgcagaagacgatgtccagtcaacctatgcgggcgcactttttcataacaatcggaattatcacctttctccttataagaacaatgatactcttgtttactggtcttcatcacgttgtcttcctcaaaggaaccagcttgccaaacgtctactcagcttgctaccctcccattcatttggcaagtgcctgaacaatgttggaggtctagacaaggcactctcattttatcctgagtgtatcaaggattctaatgaagcacccaaatggtgggatcatttgcattgcgcaatgtcacattacaagtttgtccttgcgattgagaacaccaagacagaaagttatgtaacagagaagttattttacgcactggactctggtgcagtccccatttattttggtgccccgaatgtctgggactttgtacctccacattcaataattgatggaagcaagtttagctctttggaggaattggcctcgtacgttaaggccattgctaataatccagtagcttatgcagagtaccatgcttggagaagatgtggcgtgctgggtaactatagaaaaacacgggcagctagtctggataccttgccttgcaggttatgtgaagccatcagtaaaagaaatggaagaaatgcaaaagcctcttgactattcaacagcaaagctacagggtactaggctttaaattgtgtacttagatcaactagtgttgtttctaaacagtgcatgtcttgttaggacttaggatatagtggcttgtagagatctcaaacccttacaaattaatactacataaattttggtctaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0132E21.2" temp_strand="-" temp_description="C06SLm0132E21.2  AC211087.2 htgs_phase:3 submitted_to_sgn_as:C06SLm0132E21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="70400" stop="65775"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70100" g_stop="69375" g_length="726"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="726" r_length="726" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69374" i_stop="67104" i_length="2271">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67103" g_stop="66930" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="727" r_stop="900" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66929" i_stop="66805" i_length="125">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.946" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66804" g_stop="66075" g_length="730"/>
          <reference_exon_boundary r_type="cDNA" r_start="901" r_stop="1630" r_length="730" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0132E21.2" gen_strand="-" ref_id="SGN-E744710" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1630</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0132E21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E744710" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70100" e_stop="69375"/>
          <exon e_start="67103" e_stop="66930"/>
          <exon e_start="66804" e_stop="66075"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAACAGTATGCTTATATTAGTCTTCCATGACAATATTAGGTCGAACAATCAAACAATTTTACTAATCTAACCACCGGTAGATGAAAACTGCCCCTTCAAGACTACCAATTATCAATTTCAGATCGATTATTTTGATAACCCCTTCCCCTCTCTCTCCTTGAGTGACCAAGGGAGGGAGAGAGAGAAAAAAAAAAGGTGATTTTTTTTGTGTATTCTTGAACTGAAAAATGCAATTGAAATCTGTCAACACATTTGCAATCACAATCATGTTGGGTTTTACACTTATCATTCTATTCTTCTCTGGATTTCTTGATTTCCCACTTCACACTTCTTCTTCAATCCCATCAACGAAAAATCAAATCTTGACCACCATCTCAGTTTCCGAGCCCGACCCTTTTAGTAACTTGTTGAGCACTTTTAAGAAATGGGATTCTCAAGTGGGTTGTGCTAAGTTTAGGGGGGAACATAAAGGGTTATTAGGAAATGGGTTGTTGTTGGATTCTTCTTCTGGTTCTTTGCAAAATGTTGATGATGGTGAGTTGAAGTGTAATGAGCTAAAGATGGATCATGTGAGTGTATTAGTTAAAGGGTGGACTTGGATTCCTGATAATTTGGATAATTTGTACTCTTGTCGGTGTGGGCTTAGCTGTTTGTGGACTAAATCTTCGGTTGTTGCTGATAAACCTGATGCTTTGTTGTTTGAGACAGCTACTCCTCCTGTTGAGGTATTCTTCTTAATCAGTGTTAGCTCTTTTATCCAAATGATCACTCAATTAATTGTTATTATCTCGGGAATTCATGTTTTATCAATCTTAGCATGAATGAGTTCTTTGTTTTAATCAATAGTGATAATGCATCTAGATAAACCTATGTTTCTACTTTGTGGTATTTCCTGATTGTGTGGATTTTGGTTCGTTACTGTCTGAGGCTTTAAACGTCTATAATCCCTATGACAATGTCAGCTTAGCTCCAAAACATGACAGAATGAAGGCAAATGATCTATTAGCCTGATAAGACTAAGTTGCCGTTTTACACTTACATTAGTCAGGTGCTTGTGAAGGGCTTCTTATTCTGCTTAGTGTACGCCCGTGTGAAATAAACGTGATACATAGAGAAACTCTGGTGTCATAGAACCTCATTTCTCGTCAAAAAATGTAGCAAAATGCAAACAGATGACTCATGTATCCTACACCCTACTAATTTGGGTTGAGGCAGGGTCGGAAAAACTTCCTTCAACCTTGAAGGTATGCTGCTGGCTTTGCGCAAATGAAAGGATCTCTCCAAATAAAATTGACGAAATGTCTAATATTGTAAGATCAATATTGAACCTTGCTGGTATCAGTATATGATTTCTTATGCCCTCACCAAATGCTCTGAAGAAATTATCTAACTATGTTTAATTATGTGAAATCGATATATGTGAGTGCACTAAGCATTTTGAATTATCTACTTCTTATCAATATTTTTTCTGCTCATGTTTAGCTTCTTGTTAGTGGTTACATTCTGGGTCGTCTCCATCCTAAATTGGGTTTTGACCTGACATACTCCAGAAATACAATCTTGAAGCGTCAGTTCCTCTTCTCCTCAGCCCTGCAGCTCGTTGCACATCCTTATTGTTAAACTTTCCAAAGCTAAATAGTGGAGCTTGCAGCTATGATTTTTCTTTTTTGCATGGAATGGAAAATGAAACCTTTTGGCCTTCAGTTTTCGGATAGACTAACCCACAGTCACTTATTACTTACGTCTTACATACATGTCTCATAGACTATTGTTTTCAAATAGAACCTCAAGCAGCGATCTTGACCAACCAAATGGTTATCTTCCACGTATAGTTATTAACGTATGGAAAGAATTGAAAAAAATAATAATTTACCCTTTACTTGTAATGGTAGGATGATTATCCGGCTCTCTATGATTTTGGTAAAAGATACACCAGTGACCAGGCCCAAATGATTCATGATTCTTTCTTAGTTTAAATCTTATTTATGTATAAGGTGATCAAGGCCTTTCATTCAATTGTGATGAAAACCTAAATAGTTGTCCATTGTACTTGCTATGTTCTGTGAAATATTTTTGCTATGAATTGTTCCAACTTACCAATTCGTAAGTCTACTCATACAATACTGTGACCTATGCAAAATTCAAGTTCTTTATATGACTATTTTTTTGGATTCTGCACTTTTTTTTATGTTCTGGGATATAGGTATGTGCTGTAAGAACTTGTTAGGAAGTTAAATGCAACAATAGTTGTTGGCAGCTTGTTAGGACATCAAAGATAGCTATTTATTCTCATAGATGTTGAAGTACAGGCGGATAGAGTACCAAGTTTTTATTTAGTGGTCTTGCCACTTCTTCACTTTGTAATCTGCAGAGATACTCTCCGCTGGACCTAAGACTTAGTGCTTAAGGTTTCACTTCCCCCAGTTGATTCTGTTTTTGCAGTTCAAGTTTCTTTTTACCTTTAATAATTGTATTCTGTATGATATCCACATTGCTGCTTTCGATGCTATTATTAGAGGATATGTGGGATGAGTTATTCGTCCTAAAAGTAGATTCTTTTGGTTTGTTATGGTTTTTAAGCACCTTAGTCAATCAGTAAATCTTCCATTCTTTATTTTCTGGTCATGTTTACACGTGAAGCATTTCTTTCTGTGAGGAGGTTCATCATGTGAGAAATGCCTGATCTATCTTCTAGCTAAGTTTCTTTCTTAAGAAGCCGCGTTTATCAGAGAAATAGTCTCTGTTGGAAAACATACTCTGATTCTATGAAGTTACGCAAATTATATTCAAATAGCTGTTATTTCAGCATTAATCTCTGGTCTATTCCCTCATCCTTTATTTTTAAATCTCTCCATTTAATGGAGGGGAGAACTACCTTTCTTCTTTGCTGAGATCCCCGCGGTAAATCTGAATTACGTAAAACTTTTACTGGTCGCACACAGTATGCATTTTTTTCTTCACTCCAACCTCCTCACAATTGTTATTTAACTTATCAGAGACGTCGAGGTGATCCATTACGTGTATACATGGATCTTGAAGCTGGTAGAAAGAAATCAGGGTATGAGGATATATTTATTGGCTATCATGCAGAAGACGATGTCCAGTCAACCTATGCGGGCGCACTTTTTCATAACAATCGGAATTATCACCTTTCTCCTTATAAGAACAATGTAAGTCAAAGACCACTTTGTTCCTTTTAATTTCCTGTACCATATTCAGTCATTGAGCTTAATGATATTACTTACTTATTCTTTACAGTGCTTGTTGTAATCTCCAGTGATTTGTAAATTTGTAGGATACTCTTGTTTACTGGTCTTCATCACGTTGTCTTCCTCAAAGGAACCAGCTTGCCAAACGTCTACTCAGCTTGCTACCCTCCCATTCATTTGGCAAGTGCCTGAACAATGTTGGAGGTCTAGACAAGGCACTCTCATTTTATCCTGAGTGTATCAAGGATTCTAATGAAGCACCCAAATGGTGGGATCATTTGCATTGCGCAATGTCACATTACAAGTTTGTCCTTGCGATTGAGAACACCAAGACAGAAAGTTATGTAACAGAGAAGTTATTTTACGCACTGGACTCTGGTGCAGTCCCCATTTATTTTGGTGCCCCGAATGTCTGGGACTTTGTACCTCCACATTCAATAATTGATGGAAGCAAGTTTAGCTCTTTGGAGGAATTGGCCTCGTACGTTAAGGCCATTGCTAATAATCCAGTAGCTTATGCAGAGTACCATGCTTGGAGAAGATGTGGCGTGCTGGGTAACTATAGAAAAACACGGGCAGCTAGTCTGGATACCTTGCCTTGCAGGTTATGTGAAGCCATCAGTAAAAGAAATGGAAGAAATGCAAAAGCCTCTTGACTATTCAACAGCAAAGCTACAGGGTACTAGGCTTTAAATTGTGTACTTAGATCAACTAGTGTTGTTTCTAAACAGTGCATGTCTTGTTAGGACTTAGGATATAGTGGCTTGTAGAGATCTCAAACCCTTACAAATTAATACTACATAAATTTTGGTCTAA</genome_strand>
        <mrna_strand>TAAACAGTATGCTTATATTAGTCTTCCATGACAATATTAGGTCGAACAATCAAACAATTTTACTAATCTAACCACCGGTAGATGAAAACTGCCCCTTCAAGACTACCAATTATCAATTTCAGATCGATTATTTTGATAACCCCTTCCCCTCTCTCTCCTTGAGTGACCAAGGGAGGGAGAGAGAGAAAAAAAAAAGGTGATTTTTTTTGTGTATTCTTGAACTGAAAAATGCAATTGAAATCTGTCAACACATTTGCAATCACAATCATGTTGGGTTTTACACTTATCATTCTATTCTTCTCTGGATTTCTTGATTTCCCACTTCACACTTCTTCTTCAATCCCATCAACGAAAAATCAAATCTTGACCACCATCTCAGTTTCCGAGCCCGACCCTTTTAGTAACTTGTTGAGCACTTTTAAGAAATGGGATTCTCAAGTGGGTTGTGCTAAGTTTAGGGGGGAACATAAAGGGTTATTAGGAAATGGGTTGTTGTTGGATTCTTCTTCTGGTTCTTTGCAAAATGTTGATGATGGTGAGTTGAAGTGTAATGAGCTAAAGATGGATCATGTGAGTGTATTAGTTAAAGGGTGGACTTGGATTCCTGATAATTTGGATAATTTGTACTCTTGTCGGTGTGGGCTTAGCTGTTTGTGGACTAAATCTTCGGTTGTTGCTGATAAACCTGATGCTTTGTTGTTTGAGACAGCTACTCCTCCTGTTGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACGTCGAGGTGATCCATTACGTGTATACATGGATCTTGAAGCTGGTAGAAAGAAATCAGGGTATGAGGATATATTTATTGGCTATCATGCAGAAGACGATGTCCAGTCAACCTATGCGGGCGCACTTTTTCATAACAATCGGAATTATCACCTTTCTCCTTATAAGAACAAT.............................................................................................................................GATACTCTTGTTTACTGGTCTTCATCACGTTGTCTTCCTCAAAGGAACCAGCTTGCCAAACGTCTACTCAGCTTGCTACCCTCCCATTCATTTGGCAAGTGCCTGAACAATGTTGGAGGTCTAGACAAGGCACTCTCATTTTATCCTGAGTGTATCAAGGATTCTAATGAAGCACCCAAATGGTGGGATCATTTGCATTGCGCAATGTCACATTACAAGTTTGTCCTTGCGATTGAGAACACCAAGACAGAAAGTTATGTAACAGAGAAGTTATTTTACGCACTGGACTCTGGTGCAGTCCCCATTTATTTTGGTGCCCCGAATGTCTGGGACTTTGTACCTCCACATTCAATAATTGATGGAAGCAAGTTTAGCTCTTTGGAGGAATTGGCCTCGTACGTTAAGGCCATTGCTAATAATCCAGTAGCTTATGCAGAGTACCATGCTTGGAGAAGATGTGGCGTGCTGGGTAACTATAGAAAAACACGGGCAGCTAGTCTGGATACCTTGCCTTGCAGGTTATGTGAAGCCATCAGTAAAAGAAATGGAAGAAATGCAAAAGCCTCTTGACTATTCAACAGCAAAGCTACAGGGTACTAGGCTTTAAATTGTGTACTTAGATCAACTAGTGTTGTTTCTAAACAGTGCATGTCTTGTTAGGACTTAGGATATAGTGGCTTGTAGAGATCTCAAACCCTTACAAATTAATACTACATAAATTTTGGTCTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E273200" ref_strand="+" ref_description="SGN-E273200 [cLEM-24-P2]">
      <seq>tcaaaggaacccagcttgccaaacgtctacctcagcttgctacccctcccattcatttggcaagtgcctgaacaatgttggaggtctagaccaaggcactctcattttatcctgagtgtatcaaggattctaatgaagcacccaaatggtgggatcatttgcattgcgcaatgtcacattacaagtttgtccttgcgattgagaacaccaagacagaaagttatgtaacagagaagttattttacgcactggactctggtgcagtccccatttattttggtgccccgaatgtctgggactttgtacctccacattcaataattgatggaagcaagtttagctctttggaggaattggcctcgtacgttaaggccattgctaataatccagtagcttatgcagagtaccatgcttggagaagatgtggcgtgctgggtaactatagaaaaacacgggcagctagtctggataccttgccttgcaggttatgtgaagccatcagtaaaagaaatggaagaaatgcaaaagcctcttgactattcaacagcaaagctacagggtactaggctttaaattgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0132E21.2" temp_strand="-" temp_description="C06SLm0132E21.2  AC211087.2 htgs_phase:3 submitted_to_sgn_as:C06SLm0132E21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="67066" stop="65892"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66766" g_stop="66192" g_length="575"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="579" r_length="579" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0132E21.2" gen_strand="-" ref_id="SGN-E273200" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>575</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0132E21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E273200" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66766" e_stop="66192"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAAGGAA-CCAGCTTGCCAAACGTCTA-CTCAGCTTGCTA-CCCTCCCATTCATTTGGCAAGTGCCTGAACAATGTTGGAGGTCTAGA-CAAGGCACTCTCATTTTATCCTGAGTGTATCAAGGATTCTAATGAAGCACCCAAATGGTGGGATCATTTGCATTGCGCAATGTCACATTACAAGTTTGTCCTTGCGATTGAGAACACCAAGACAGAAAGTTATGTAACAGAGAAGTTATTTTACGCACTGGACTCTGGTGCAGTCCCCATTTATTTTGGTGCCCCGAATGTCTGGGACTTTGTACCTCCACATTCAATAATTGATGGAAGCAAGTTTAGCTCTTTGGAGGAATTGGCCTCGTACGTTAAGGCCATTGCTAATAATCCAGTAGCTTATGCAGAGTACCATGCTTGGAGAAGATGTGGCGTGCTGGGTAACTATAGAAAAACACGGGCAGCTAGTCTGGATACCTTGCCTTGCAGGTTATGTGAAGCCATCAGTAAAAGAAATGGAAGAAATGCAAAAGCCTCTTGACTATTCAACAGCAAAGCTACAGGGTACTAGGCTTTAAATTGTG</genome_strand>
        <mrna_strand>TCAAAGGAACCCAGCTTGCCAAACGTCTACCTCAGCTTGCTACCCCTCCCATTCATTTGGCAAGTGCCTGAACAATGTTGGAGGTCTAGACCAAGGCACTCTCATTTTATCCTGAGTGTATCAAGGATTCTAATGAAGCACCCAAATGGTGGGATCATTTGCATTGCGCAATGTCACATTACAAGTTTGTCCTTGCGATTGAGAACACCAAGACAGAAAGTTATGTAACAGAGAAGTTATTTTACGCACTGGACTCTGGTGCAGTCCCCATTTATTTTGGTGCCCCGAATGTCTGGGACTTTGTACCTCCACATTCAATAATTGATGGAAGCAAGTTTAGCTCTTTGGAGGAATTGGCCTCGTACGTTAAGGCCATTGCTAATAATCCAGTAGCTTATGCAGAGTACCATGCTTGGAGAAGATGTGGCGTGCTGGGTAACTATAGAAAAACACGGGCAGCTAGTCTGGATACCTTGCCTTGCAGGTTATGTGAAGCCATCAGTAAAAGAAATGGAAGAAATGCAAAAGCCTCTTGACTATTCAACAGCAAAGCTACAGGGTACTAGGCTTTAAATTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E214628" ref_strand="+" ref_description="SGN-E214628 [cLEC-79-O19]">
      <seq>tgtgctaagtttaggggggaacataaagggttattaggaaatgggttgttgttggattcttcttctggttctttgcaaaatgttgatgatggtgagttgaagtgtaatgagctaaagatggatcatgtgagtgtattagttaaagggtggacttggattcctgataatttggataatttgtactcttgtcggtgtgggcttagctgtttgtggactaaatcttcggttgttgctgataaacctgatgctttgttgtttgagacagctactcctcctgttgagagacgtcgaggtgatccattacgtgtatacatggatcttgaagctggtagaaagaaatcagggtatgaggatatatttattggctatcatgcagaagacgatgtccagtcaacctatgcgggcgcactttttcataacaatcggaattatcacctttctccttataagaacaatgatactcttgtttactggtcttcatcacgttgtcttcctcaaaggaaccagcttgccaaacgtctactcagcttgctaccctcccattcatttggcaagtgcctgaacaaatgttggaggtctagacaaggcactctcattttatcctgagtgtatcaaggattctaatgaagcacccaaatggtgggatcatttgcattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0132E21.2" temp_strand="-" temp_description="C06SLm0132E21.2  AC211087.2 htgs_phase:3 submitted_to_sgn_as:C06SLm0132E21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="69956" stop="66305"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69656" g_stop="69375" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="282" r_length="282" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69374" i_stop="67104" i_length="2271">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67103" g_stop="66930" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="456" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66929" i_stop="66805" i_length="125">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.946" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66804" g_stop="66605" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="457" r_stop="657" r_length="201" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0132E21.2" gen_strand="-" ref_id="SGN-E214628" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>656</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0132E21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E214628" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69656" e_stop="69375"/>
          <exon e_start="67103" e_stop="66930"/>
          <exon e_start="66804" e_stop="66605"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTGCTAAGTTTAGGGGGGAACATAAAGGGTTATTAGGAAATGGGTTGTTGTTGGATTCTTCTTCTGGTTCTTTGCAAAATGTTGATGATGGTGAGTTGAAGTGTAATGAGCTAAAGATGGATCATGTGAGTGTATTAGTTAAAGGGTGGACTTGGATTCCTGATAATTTGGATAATTTGTACTCTTGTCGGTGTGGGCTTAGCTGTTTGTGGACTAAATCTTCGGTTGTTGCTGATAAACCTGATGCTTTGTTGTTTGAGACAGCTACTCCTCCTGTTGAGGTATTCTTCTTAATCAGTGTTAGCTCTTTTATCCAAATGATCACTCAATTAATTGTTATTATCTCGGGAATTCATGTTTTATCAATCTTAGCATGAATGAGTTCTTTGTTTTAATCAATAGTGATAATGCATCTAGATAAACCTATGTTTCTACTTTGTGGTATTTCCTGATTGTGTGGATTTTGGTTCGTTACTGTCTGAGGCTTTAAACGTCTATAATCCCTATGACAATGTCAGCTTAGCTCCAAAACATGACAGAATGAAGGCAAATGATCTATTAGCCTGATAAGACTAAGTTGCCGTTTTACACTTACATTAGTCAGGTGCTTGTGAAGGGCTTCTTATTCTGCTTAGTGTACGCCCGTGTGAAATAAACGTGATACATAGAGAAACTCTGGTGTCATAGAACCTCATTTCTCGTCAAAAAATGTAGCAAAATGCAAACAGATGACTCATGTATCCTACACCCTACTAATTTGGGTTGAGGCAGGGTCGGAAAAACTTCCTTCAACCTTGAAGGTATGCTGCTGGCTTTGCGCAAATGAAAGGATCTCTCCAAATAAAATTGACGAAATGTCTAATATTGTAAGATCAATATTGAACCTTGCTGGTATCAGTATATGATTTCTTATGCCCTCACCAAATGCTCTGAAGAAATTATCTAACTATGTTTAATTATGTGAAATCGATATATGTGAGTGCACTAAGCATTTTGAATTATCTACTTCTTATCAATATTTTTTCTGCTCATGTTTAGCTTCTTGTTAGTGGTTACATTCTGGGTCGTCTCCATCCTAAATTGGGTTTTGACCTGACATACTCCAGAAATACAATCTTGAAGCGTCAGTTCCTCTTCTCCTCAGCCCTGCAGCTCGTTGCACATCCTTATTGTTAAACTTTCCAAAGCTAAATAGTGGAGCTTGCAGCTATGATTTTTCTTTTTTGCATGGAATGGAAAATGAAACCTTTTGGCCTTCAGTTTTCGGATAGACTAACCCACAGTCACTTATTACTTACGTCTTACATACATGTCTCATAGACTATTGTTTTCAAATAGAACCTCAAGCAGCGATCTTGACCAACCAAATGGTTATCTTCCACGTATAGTTATTAACGTATGGAAAGAATTGAAAAAAATAATAATTTACCCTTTACTTGTAATGGTAGGATGATTATCCGGCTCTCTATGATTTTGGTAAAAGATACACCAGTGACCAGGCCCAAATGATTCATGATTCTTTCTTAGTTTAAATCTTATTTATGTATAAGGTGATCAAGGCCTTTCATTCAATTGTGATGAAAACCTAAATAGTTGTCCATTGTACTTGCTATGTTCTGTGAAATATTTTTGCTATGAATTGTTCCAACTTACCAATTCGTAAGTCTACTCATACAATACTGTGACCTATGCAAAATTCAAGTTCTTTATATGACTATTTTTTTGGATTCTGCACTTTTTTTTATGTTCTGGGATATAGGTATGTGCTGTAAGAACTTGTTAGGAAGTTAAATGCAACAATAGTTGTTGGCAGCTTGTTAGGACATCAAAGATAGCTATTTATTCTCATAGATGTTGAAGTACAGGCGGATAGAGTACCAAGTTTTTATTTAGTGGTCTTGCCACTTCTTCACTTTGTAATCTGCAGAGATACTCTCCGCTGGACCTAAGACTTAGTGCTTAAGGTTTCACTTCCCCCAGTTGATTCTGTTTTTGCAGTTCAAGTTTCTTTTTACCTTTAATAATTGTATTCTGTATGATATCCACATTGCTGCTTTCGATGCTATTATTAGAGGATATGTGGGATGAGTTATTCGTCCTAAAAGTAGATTCTTTTGGTTTGTTATGGTTTTTAAGCACCTTAGTCAATCAGTAAATCTTCCATTCTTTATTTTCTGGTCATGTTTACACGTGAAGCATTTCTTTCTGTGAGGAGGTTCATCATGTGAGAAATGCCTGATCTATCTTCTAGCTAAGTTTCTTTCTTAAGAAGCCGCGTTTATCAGAGAAATAGTCTCTGTTGGAAAACATACTCTGATTCTATGAAGTTACGCAAATTATATTCAAATAGCTGTTATTTCAGCATTAATCTCTGGTCTATTCCCTCATCCTTTATTTTTAAATCTCTCCATTTAATGGAGGGGAGAACTACCTTTCTTCTTTGCTGAGATCCCCGCGGTAAATCTGAATTACGTAAAACTTTTACTGGTCGCACACAGTATGCATTTTTTTCTTCACTCCAACCTCCTCACAATTGTTATTTAACTTATCAGAGACGTCGAGGTGATCCATTACGTGTATACATGGATCTTGAAGCTGGTAGAAAGAAATCAGGGTATGAGGATATATTTATTGGCTATCATGCAGAAGACGATGTCCAGTCAACCTATGCGGGCGCACTTTTTCATAACAATCGGAATTATCACCTTTCTCCTTATAAGAACAATGTAAGTCAAAGACCACTTTGTTCCTTTTAATTTCCTGTACCATATTCAGTCATTGAGCTTAATGATATTACTTACTTATTCTTTACAGTGCTTGTTGTAATCTCCAGTGATTTGTAAATTTGTAGGATACTCTTGTTTACTGGTCTTCATCACGTTGTCTTCCTCAAAGGAACCAGCTTGCCAAACGTCTACTCAGCTTGCTACCCTCCCATTCATTTGGCAAGTGCCTGAAC-AATGTTGGAGGTCTAGACAAGGCACTCTCATTTTATCCTGAGTGTATCAAGGATTCTAATGAAGCACCCAAATGGTGGGATCATTTGCATTG</genome_strand>
        <mrna_strand>TGTGCTAAGTTTAGGGGGGAACATAAAGGGTTATTAGGAAATGGGTTGTTGTTGGATTCTTCTTCTGGTTCTTTGCAAAATGTTGATGATGGTGAGTTGAAGTGTAATGAGCTAAAGATGGATCATGTGAGTGTATTAGTTAAAGGGTGGACTTGGATTCCTGATAATTTGGATAATTTGTACTCTTGTCGGTGTGGGCTTAGCTGTTTGTGGACTAAATCTTCGGTTGTTGCTGATAAACCTGATGCTTTGTTGTTTGAGACAGCTACTCCTCCTGTTGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACGTCGAGGTGATCCATTACGTGTATACATGGATCTTGAAGCTGGTAGAAAGAAATCAGGGTATGAGGATATATTTATTGGCTATCATGCAGAAGACGATGTCCAGTCAACCTATGCGGGCGCACTTTTTCATAACAATCGGAATTATCACCTTTCTCCTTATAAGAACAAT.............................................................................................................................GATACTCTTGTTTACTGGTCTTCATCACGTTGTCTTCCTCAAAGGAACCAGCTTGCCAAACGTCTACTCAGCTTGCTACCCTCCCATTCATTTGGCAAGTGCCTGAACAAATGTTGGAGGTCTAGACAAGGCACTCTCATTTTATCCTGAGTGTATCAAGGATTCTAATGAAGCACCCAAATGGTGGGATCATTTGCATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E700190" ref_strand="+" ref_description="SGN-E700190 [FA12BF04]">
      <seq>attttgataaccccttcccctctctctccttgagtgaccaagggagggagagagagaaaaaaaaaaggtgattttttttgtgtattcttgaactgaaaaatgcaattgaaatctgtcaacacatttgcaatcacaatcatgttgggttttacacttatcattctattcttctctggatttcttgatttcccacttcacacttcttcttcaatcccatcaacgaaaaatcaaatcttgaccaccatctcagtttccgagcccgacccttttagtaacttgttgagcacttttaaaaaatgggattctcaagtgggttgtgctaagtttaggggggaacataaagggttattaggaaatgggttgttgttggattcttcttctggttctttgcaaaatgttgatgatggtgagttgaagtgtaatgagctaaagatggatcatgtgagtgtattagttaaagggtggacttggattcctgataatttggataatttgtactcttgtcggtgtgggcttagctgtttgtggactaaatcttcggttgttgctgataaacctgatgctttgttgtttgagacagctactcctcctgttgagagacgtcaaggtgatccattacgtgtatacatggatcttgaagctggtagaaagaaatcagggtatgaggatatatttattggctatcatgcaaaagacgatgtccagtcaacctatgcgggcgcactttttcataacaatcggaattatcacctttctccttataaaaacaatgatactcttgtttactggccttcatcacgttgtcttcctcaaaggaaccagcttgccaaacgtctactcagcttgctaccctcccattcattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0132E21.2" temp_strand="-" temp_description="C06SLm0132E21.2  AC211087.2 htgs_phase:3 submitted_to_sgn_as:C06SLm0132E21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="70271" stop="66412"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69971" g_stop="69375" g_length="597"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="597" r_length="597" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69374" i_stop="67104" i_length="2271">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67103" g_stop="66930" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="598" r_stop="771" r_length="174" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66929" i_stop="66805" i_length="125">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.946" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66804" g_stop="66712" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="772" r_stop="864" r_length="93" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0132E21.2" gen_strand="-" ref_id="SGN-E700190" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>864</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0132E21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E700190" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69971" e_stop="69375"/>
          <exon e_start="67103" e_stop="66930"/>
          <exon e_start="66804" e_stop="66712"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTGATAACCCCTTCCCCTCTCTCTCCTTGAGTGACCAAGGGAGGGAGAGAGAGAAAAAAAAAAGGTGATTTTTTTTGTGTATTCTTGAACTGAAAAATGCAATTGAAATCTGTCAACACATTTGCAATCACAATCATGTTGGGTTTTACACTTATCATTCTATTCTTCTCTGGATTTCTTGATTTCCCACTTCACACTTCTTCTTCAATCCCATCAACGAAAAATCAAATCTTGACCACCATCTCAGTTTCCGAGCCCGACCCTTTTAGTAACTTGTTGAGCACTTTTAAGAAATGGGATTCTCAAGTGGGTTGTGCTAAGTTTAGGGGGGAACATAAAGGGTTATTAGGAAATGGGTTGTTGTTGGATTCTTCTTCTGGTTCTTTGCAAAATGTTGATGATGGTGAGTTGAAGTGTAATGAGCTAAAGATGGATCATGTGAGTGTATTAGTTAAAGGGTGGACTTGGATTCCTGATAATTTGGATAATTTGTACTCTTGTCGGTGTGGGCTTAGCTGTTTGTGGACTAAATCTTCGGTTGTTGCTGATAAACCTGATGCTTTGTTGTTTGAGACAGCTACTCCTCCTGTTGAGGTATTCTTCTTAATCAGTGTTAGCTCTTTTATCCAAATGATCACTCAATTAATTGTTATTATCTCGGGAATTCATGTTTTATCAATCTTAGCATGAATGAGTTCTTTGTTTTAATCAATAGTGATAATGCATCTAGATAAACCTATGTTTCTACTTTGTGGTATTTCCTGATTGTGTGGATTTTGGTTCGTTACTGTCTGAGGCTTTAAACGTCTATAATCCCTATGACAATGTCAGCTTAGCTCCAAAACATGACAGAATGAAGGCAAATGATCTATTAGCCTGATAAGACTAAGTTGCCGTTTTACACTTACATTAGTCAGGTGCTTGTGAAGGGCTTCTTATTCTGCTTAGTGTACGCCCGTGTGAAATAAACGTGATACATAGAGAAACTCTGGTGTCATAGAACCTCATTTCTCGTCAAAAAATGTAGCAAAATGCAAACAGATGACTCATGTATCCTACACCCTACTAATTTGGGTTGAGGCAGGGTCGGAAAAACTTCCTTCAACCTTGAAGGTATGCTGCTGGCTTTGCGCAAATGAAAGGATCTCTCCAAATAAAATTGACGAAATGTCTAATATTGTAAGATCAATATTGAACCTTGCTGGTATCAGTATATGATTTCTTATGCCCTCACCAAATGCTCTGAAGAAATTATCTAACTATGTTTAATTATGTGAAATCGATATATGTGAGTGCACTAAGCATTTTGAATTATCTACTTCTTATCAATATTTTTTCTGCTCATGTTTAGCTTCTTGTTAGTGGTTACATTCTGGGTCGTCTCCATCCTAAATTGGGTTTTGACCTGACATACTCCAGAAATACAATCTTGAAGCGTCAGTTCCTCTTCTCCTCAGCCCTGCAGCTCGTTGCACATCCTTATTGTTAAACTTTCCAAAGCTAAATAGTGGAGCTTGCAGCTATGATTTTTCTTTTTTGCATGGAATGGAAAATGAAACCTTTTGGCCTTCAGTTTTCGGATAGACTAACCCACAGTCACTTATTACTTACGTCTTACATACATGTCTCATAGACTATTGTTTTCAAATAGAACCTCAAGCAGCGATCTTGACCAACCAAATGGTTATCTTCCACGTATAGTTATTAACGTATGGAAAGAATTGAAAAAAATAATAATTTACCCTTTACTTGTAATGGTAGGATGATTATCCGGCTCTCTATGATTTTGGTAAAAGATACACCAGTGACCAGGCCCAAATGATTCATGATTCTTTCTTAGTTTAAATCTTATTTATGTATAAGGTGATCAAGGCCTTTCATTCAATTGTGATGAAAACCTAAATAGTTGTCCATTGTACTTGCTATGTTCTGTGAAATATTTTTGCTATGAATTGTTCCAACTTACCAATTCGTAAGTCTACTCATACAATACTGTGACCTATGCAAAATTCAAGTTCTTTATATGACTATTTTTTTGGATTCTGCACTTTTTTTTATGTTCTGGGATATAGGTATGTGCTGTAAGAACTTGTTAGGAAGTTAAATGCAACAATAGTTGTTGGCAGCTTGTTAGGACATCAAAGATAGCTATTTATTCTCATAGATGTTGAAGTACAGGCGGATAGAGTACCAAGTTTTTATTTAGTGGTCTTGCCACTTCTTCACTTTGTAATCTGCAGAGATACTCTCCGCTGGACCTAAGACTTAGTGCTTAAGGTTTCACTTCCCCCAGTTGATTCTGTTTTTGCAGTTCAAGTTTCTTTTTACCTTTAATAATTGTATTCTGTATGATATCCACATTGCTGCTTTCGATGCTATTATTAGAGGATATGTGGGATGAGTTATTCGTCCTAAAAGTAGATTCTTTTGGTTTGTTATGGTTTTTAAGCACCTTAGTCAATCAGTAAATCTTCCATTCTTTATTTTCTGGTCATGTTTACACGTGAAGCATTTCTTTCTGTGAGGAGGTTCATCATGTGAGAAATGCCTGATCTATCTTCTAGCTAAGTTTCTTTCTTAAGAAGCCGCGTTTATCAGAGAAATAGTCTCTGTTGGAAAACATACTCTGATTCTATGAAGTTACGCAAATTATATTCAAATAGCTGTTATTTCAGCATTAATCTCTGGTCTATTCCCTCATCCTTTATTTTTAAATCTCTCCATTTAATGGAGGGGAGAACTACCTTTCTTCTTTGCTGAGATCCCCGCGGTAAATCTGAATTACGTAAAACTTTTACTGGTCGCACACAGTATGCATTTTTTTCTTCACTCCAACCTCCTCACAATTGTTATTTAACTTATCAGAGACGTCGAGGTGATCCATTACGTGTATACATGGATCTTGAAGCTGGTAGAAAGAAATCAGGGTATGAGGATATATTTATTGGCTATCATGCAGAAGACGATGTCCAGTCAACCTATGCGGGCGCACTTTTTCATAACAATCGGAATTATCACCTTTCTCCTTATAAGAACAATGTAAGTCAAAGACCACTTTGTTCCTTTTAATTTCCTGTACCATATTCAGTCATTGAGCTTAATGATATTACTTACTTATTCTTTACAGTGCTTGTTGTAATCTCCAGTGATTTGTAAATTTGTAGGATACTCTTGTTTACTGGTCTTCATCACGTTGTCTTCCTCAAAGGAACCAGCTTGCCAAACGTCTACTCAGCTTGCTACCCTCCCATTCATTT</genome_strand>
        <mrna_strand>ATTTTGATAACCCCTTCCCCTCTCTCTCCTTGAGTGACCAAGGGAGGGAGAGAGAGAAAAAAAAAAGGTGATTTTTTTTGTGTATTCTTGAACTGAAAAATGCAATTGAAATCTGTCAACACATTTGCAATCACAATCATGTTGGGTTTTACACTTATCATTCTATTCTTCTCTGGATTTCTTGATTTCCCACTTCACACTTCTTCTTCAATCCCATCAACGAAAAATCAAATCTTGACCACCATCTCAGTTTCCGAGCCCGACCCTTTTAGTAACTTGTTGAGCACTTTTAAAAAATGGGATTCTCAAGTGGGTTGTGCTAAGTTTAGGGGGGAACATAAAGGGTTATTAGGAAATGGGTTGTTGTTGGATTCTTCTTCTGGTTCTTTGCAAAATGTTGATGATGGTGAGTTGAAGTGTAATGAGCTAAAGATGGATCATGTGAGTGTATTAGTTAAAGGGTGGACTTGGATTCCTGATAATTTGGATAATTTGTACTCTTGTCGGTGTGGGCTTAGCTGTTTGTGGACTAAATCTTCGGTTGTTGCTGATAAACCTGATGCTTTGTTGTTTGAGACAGCTACTCCTCCTGTTGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACGTCAAGGTGATCCATTACGTGTATACATGGATCTTGAAGCTGGTAGAAAGAAATCAGGGTATGAGGATATATTTATTGGCTATCATGCAAAAGACGATGTCCAGTCAACCTATGCGGGCGCACTTTTTCATAACAATCGGAATTATCACCTTTCTCCTTATAAAAACAAT.............................................................................................................................GATACTCTTGTTTACTGGCCTTCATCACGTTGTCTTCCTCAAAGGAACCAGCTTGCCAAACGTCTACTCAGCTTGCTACCCTCCCATTCATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E308119" ref_strand="+" ref_description="SGN-E308119 [cLEY-14-I21]">
      <seq>tcttcttctggttctttgcaaaatgttgatgatggtgagttgaagtgtaatgagctaaagatggatcatgtgagtgtattagttaaagggtggacttggattcctgataatttggataatttgtactcttgtcggtgtgggcttagctgtttgtggactaaatcttcggttgttgctgataaacctgatgctttgttgtttgagacagctactccttctgttgagagacgtcgaggtgatccattacgtgtatacatggatcttgaagctggtagaaagaaatcagggtatgaggatatatttattggctatcatgcagaagacgatgttcagtcaacctatgcgggcgcactttttcataacaatcggtattatcacctttctccttataagaacaatgatactcttgtttactggtcttcatcacgttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0132E21.2" temp_strand="-" temp_description="C06SLm0132E21.2  AC211087.2 htgs_phase:3 submitted_to_sgn_as:C06SLm0132E21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="69899" stop="66473"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69599" g_stop="69375" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="225" r_length="225" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69374" i_stop="67104" i_length="2271">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67103" g_stop="66930" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="399" r_length="174" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66929" i_stop="66805" i_length="125">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.946" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66804" g_stop="66773" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="431" r_length="32" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0132E21.2" gen_strand="-" ref_id="SGN-E308119" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>431</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0132E21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E308119" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69599" e_stop="69375"/>
          <exon e_start="67103" e_stop="66930"/>
          <exon e_start="66804" e_stop="66773"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCTTCTGGTTCTTTGCAAAATGTTGATGATGGTGAGTTGAAGTGTAATGAGCTAAAGATGGATCATGTGAGTGTATTAGTTAAAGGGTGGACTTGGATTCCTGATAATTTGGATAATTTGTACTCTTGTCGGTGTGGGCTTAGCTGTTTGTGGACTAAATCTTCGGTTGTTGCTGATAAACCTGATGCTTTGTTGTTTGAGACAGCTACTCCTCCTGTTGAGGTATTCTTCTTAATCAGTGTTAGCTCTTTTATCCAAATGATCACTCAATTAATTGTTATTATCTCGGGAATTCATGTTTTATCAATCTTAGCATGAATGAGTTCTTTGTTTTAATCAATAGTGATAATGCATCTAGATAAACCTATGTTTCTACTTTGTGGTATTTCCTGATTGTGTGGATTTTGGTTCGTTACTGTCTGAGGCTTTAAACGTCTATAATCCCTATGACAATGTCAGCTTAGCTCCAAAACATGACAGAATGAAGGCAAATGATCTATTAGCCTGATAAGACTAAGTTGCCGTTTTACACTTACATTAGTCAGGTGCTTGTGAAGGGCTTCTTATTCTGCTTAGTGTACGCCCGTGTGAAATAAACGTGATACATAGAGAAACTCTGGTGTCATAGAACCTCATTTCTCGTCAAAAAATGTAGCAAAATGCAAACAGATGACTCATGTATCCTACACCCTACTAATTTGGGTTGAGGCAGGGTCGGAAAAACTTCCTTCAACCTTGAAGGTATGCTGCTGGCTTTGCGCAAATGAAAGGATCTCTCCAAATAAAATTGACGAAATGTCTAATATTGTAAGATCAATATTGAACCTTGCTGGTATCAGTATATGATTTCTTATGCCCTCACCAAATGCTCTGAAGAAATTATCTAACTATGTTTAATTATGTGAAATCGATATATGTGAGTGCACTAAGCATTTTGAATTATCTACTTCTTATCAATATTTTTTCTGCTCATGTTTAGCTTCTTGTTAGTGGTTACATTCTGGGTCGTCTCCATCCTAAATTGGGTTTTGACCTGACATACTCCAGAAATACAATCTTGAAGCGTCAGTTCCTCTTCTCCTCAGCCCTGCAGCTCGTTGCACATCCTTATTGTTAAACTTTCCAAAGCTAAATAGTGGAGCTTGCAGCTATGATTTTTCTTTTTTGCATGGAATGGAAAATGAAACCTTTTGGCCTTCAGTTTTCGGATAGACTAACCCACAGTCACTTATTACTTACGTCTTACATACATGTCTCATAGACTATTGTTTTCAAATAGAACCTCAAGCAGCGATCTTGACCAACCAAATGGTTATCTTCCACGTATAGTTATTAACGTATGGAAAGAATTGAAAAAAATAATAATTTACCCTTTACTTGTAATGGTAGGATGATTATCCGGCTCTCTATGATTTTGGTAAAAGATACACCAGTGACCAGGCCCAAATGATTCATGATTCTTTCTTAGTTTAAATCTTATTTATGTATAAGGTGATCAAGGCCTTTCATTCAATTGTGATGAAAACCTAAATAGTTGTCCATTGTACTTGCTATGTTCTGTGAAATATTTTTGCTATGAATTGTTCCAACTTACCAATTCGTAAGTCTACTCATACAATACTGTGACCTATGCAAAATTCAAGTTCTTTATATGACTATTTTTTTGGATTCTGCACTTTTTTTTATGTTCTGGGATATAGGTATGTGCTGTAAGAACTTGTTAGGAAGTTAAATGCAACAATAGTTGTTGGCAGCTTGTTAGGACATCAAAGATAGCTATTTATTCTCATAGATGTTGAAGTACAGGCGGATAGAGTACCAAGTTTTTATTTAGTGGTCTTGCCACTTCTTCACTTTGTAATCTGCAGAGATACTCTCCGCTGGACCTAAGACTTAGTGCTTAAGGTTTCACTTCCCCCAGTTGATTCTGTTTTTGCAGTTCAAGTTTCTTTTTACCTTTAATAATTGTATTCTGTATGATATCCACATTGCTGCTTTCGATGCTATTATTAGAGGATATGTGGGATGAGTTATTCGTCCTAAAAGTAGATTCTTTTGGTTTGTTATGGTTTTTAAGCACCTTAGTCAATCAGTAAATCTTCCATTCTTTATTTTCTGGTCATGTTTACACGTGAAGCATTTCTTTCTGTGAGGAGGTTCATCATGTGAGAAATGCCTGATCTATCTTCTAGCTAAGTTTCTTTCTTAAGAAGCCGCGTTTATCAGAGAAATAGTCTCTGTTGGAAAACATACTCTGATTCTATGAAGTTACGCAAATTATATTCAAATAGCTGTTATTTCAGCATTAATCTCTGGTCTATTCCCTCATCCTTTATTTTTAAATCTCTCCATTTAATGGAGGGGAGAACTACCTTTCTTCTTTGCTGAGATCCCCGCGGTAAATCTGAATTACGTAAAACTTTTACTGGTCGCACACAGTATGCATTTTTTTCTTCACTCCAACCTCCTCACAATTGTTATTTAACTTATCAGAGACGTCGAGGTGATCCATTACGTGTATACATGGATCTTGAAGCTGGTAGAAAGAAATCAGGGTATGAGGATATATTTATTGGCTATCATGCAGAAGACGATGTCCAGTCAACCTATGCGGGCGCACTTTTTCATAACAATCGGAATTATCACCTTTCTCCTTATAAGAACAATGTAAGTCAAAGACCACTTTGTTCCTTTTAATTTCCTGTACCATATTCAGTCATTGAGCTTAATGATATTACTTACTTATTCTTTACAGTGCTTGTTGTAATCTCCAGTGATTTGTAAATTTGTAGGATACTCTTGTTTACTGGTCTTCATCACGTTG</genome_strand>
        <mrna_strand>TCTTCTTCTGGTTCTTTGCAAAATGTTGATGATGGTGAGTTGAAGTGTAATGAGCTAAAGATGGATCATGTGAGTGTATTAGTTAAAGGGTGGACTTGGATTCCTGATAATTTGGATAATTTGTACTCTTGTCGGTGTGGGCTTAGCTGTTTGTGGACTAAATCTTCGGTTGTTGCTGATAAACCTGATGCTTTGTTGTTTGAGACAGCTACTCCTTCTGTTGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACGTCGAGGTGATCCATTACGTGTATACATGGATCTTGAAGCTGGTAGAAAGAAATCAGGGTATGAGGATATATTTATTGGCTATCATGCAGAAGACGATGTTCAGTCAACCTATGCGGGCGCACTTTTTCATAACAATCGGTATTATCACCTTTCTCCTTATAAGAACAAT.............................................................................................................................GATACTCTTGTTTACTGGTCTTCATCACGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E543618" ref_strand="+" ref_description="SGN-E543618 [TUS-65-I11]">
      <seq>atctaaacagtatgcttatattagtcttccatgacaatattaggtcgaacaatcaaacaattttactaatctaaccaccggtagatgaaaactgccccttcaagactaccaattatcaatttcagatcgattattttgataaccccttcccctctctctccttgagtgaccaagggagggagagagagaaaaaaaaaaggtgattttttttgtgtattcttgaactgaaaaatgcaattgaaatctgtcaacacatttgcaatcacaatcatgttgggttttacacttatcattctattcttctctggatttcttgatttcccacttcacacttcttcttcaatcccatcaacgaaaaatcaaatcttgaccaccatctcagtttccgagcccgacccttttagtaacttgttgagcacttttaagaaatgggattctcaagtgggttgtgctaagtttaggggggaacataaagggttattaggaaatgggttggttgttggattcttcttctggttctttgcaaaatgttgatgatggtgagttgaagtgtaatgagctaaagatggatcatgtgagtgtattagttaaagggtggacttggattcctgataatttggataatttgtactcttgtcggtgtgggcttagctgtttgtggactaaatcttcggttgttgctgataaacctgatgctttgttgtttgagacagctactcctcctgttgagagacgtcgaggtgatccattacgtgtatacatggatcttgaagctggtagaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0132E21.2" temp_strand="-" temp_description="C06SLm0132E21.2  AC211087.2 htgs_phase:3 submitted_to_sgn_as:C06SLm0132E21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="70403" stop="66750"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70103" g_stop="69375" g_length="729"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="730" r_length="730" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69374" i_stop="67104" i_length="2271">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67103" g_stop="67050" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="731" r_stop="784" r_length="54" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0132E21.2" gen_strand="-" ref_id="SGN-E543618" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>783</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0132E21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E543618" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70103" e_stop="69375"/>
          <exon e_start="67103" e_stop="67050"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTAAACAGTATGCTTATATTAGTCTTCCATGACAATATTAGGTCGAACAATCAAACAATTTTACTAATCTAACCACCGGTAGATGAAAACTGCCCCTTCAAGACTACCAATTATCAATTTCAGATCGATTATTTTGATAACCCCTTCCCCTCTCTCTCCTTGAGTGACCAAGGGAGGGAGAGAGAGAAAAAAAAAAGGTGATTTTTTTTGTGTATTCTTGAACTGAAAAATGCAATTGAAATCTGTCAACACATTTGCAATCACAATCATGTTGGGTTTTACACTTATCATTCTATTCTTCTCTGGATTTCTTGATTTCCCACTTCACACTTCTTCTTCAATCCCATCAACGAAAAATCAAATCTTGACCACCATCTCAGTTTCCGAGCCCGACCCTTTTAGTAACTTGTTGAGCACTTTTAAGAAATGGGATTCTCAAGTGGGTTGTGCTAAGTTTAGGGGGGAACATAAAGGGTTATTAGGAAATGGGTT-GTTGTTGGATTCTTCTTCTGGTTCTTTGCAAAATGTTGATGATGGTGAGTTGAAGTGTAATGAGCTAAAGATGGATCATGTGAGTGTATTAGTTAAAGGGTGGACTTGGATTCCTGATAATTTGGATAATTTGTACTCTTGTCGGTGTGGGCTTAGCTGTTTGTGGACTAAATCTTCGGTTGTTGCTGATAAACCTGATGCTTTGTTGTTTGAGACAGCTACTCCTCCTGTTGAGGTATTCTTCTTAATCAGTGTTAGCTCTTTTATCCAAATGATCACTCAATTAATTGTTATTATCTCGGGAATTCATGTTTTATCAATCTTAGCATGAATGAGTTCTTTGTTTTAATCAATAGTGATAATGCATCTAGATAAACCTATGTTTCTACTTTGTGGTATTTCCTGATTGTGTGGATTTTGGTTCGTTACTGTCTGAGGCTTTAAACGTCTATAATCCCTATGACAATGTCAGCTTAGCTCCAAAACATGACAGAATGAAGGCAAATGATCTATTAGCCTGATAAGACTAAGTTGCCGTTTTACACTTACATTAGTCAGGTGCTTGTGAAGGGCTTCTTATTCTGCTTAGTGTACGCCCGTGTGAAATAAACGTGATACATAGAGAAACTCTGGTGTCATAGAACCTCATTTCTCGTCAAAAAATGTAGCAAAATGCAAACAGATGACTCATGTATCCTACACCCTACTAATTTGGGTTGAGGCAGGGTCGGAAAAACTTCCTTCAACCTTGAAGGTATGCTGCTGGCTTTGCGCAAATGAAAGGATCTCTCCAAATAAAATTGACGAAATGTCTAATATTGTAAGATCAATATTGAACCTTGCTGGTATCAGTATATGATTTCTTATGCCCTCACCAAATGCTCTGAAGAAATTATCTAACTATGTTTAATTATGTGAAATCGATATATGTGAGTGCACTAAGCATTTTGAATTATCTACTTCTTATCAATATTTTTTCTGCTCATGTTTAGCTTCTTGTTAGTGGTTACATTCTGGGTCGTCTCCATCCTAAATTGGGTTTTGACCTGACATACTCCAGAAATACAATCTTGAAGCGTCAGTTCCTCTTCTCCTCAGCCCTGCAGCTCGTTGCACATCCTTATTGTTAAACTTTCCAAAGCTAAATAGTGGAGCTTGCAGCTATGATTTTTCTTTTTTGCATGGAATGGAAAATGAAACCTTTTGGCCTTCAGTTTTCGGATAGACTAACCCACAGTCACTTATTACTTACGTCTTACATACATGTCTCATAGACTATTGTTTTCAAATAGAACCTCAAGCAGCGATCTTGACCAACCAAATGGTTATCTTCCACGTATAGTTATTAACGTATGGAAAGAATTGAAAAAAATAATAATTTACCCTTTACTTGTAATGGTAGGATGATTATCCGGCTCTCTATGATTTTGGTAAAAGATACACCAGTGACCAGGCCCAAATGATTCATGATTCTTTCTTAGTTTAAATCTTATTTATGTATAAGGTGATCAAGGCCTTTCATTCAATTGTGATGAAAACCTAAATAGTTGTCCATTGTACTTGCTATGTTCTGTGAAATATTTTTGCTATGAATTGTTCCAACTTACCAATTCGTAAGTCTACTCATACAATACTGTGACCTATGCAAAATTCAAGTTCTTTATATGACTATTTTTTTGGATTCTGCACTTTTTTTTATGTTCTGGGATATAGGTATGTGCTGTAAGAACTTGTTAGGAAGTTAAATGCAACAATAGTTGTTGGCAGCTTGTTAGGACATCAAAGATAGCTATTTATTCTCATAGATGTTGAAGTACAGGCGGATAGAGTACCAAGTTTTTATTTAGTGGTCTTGCCACTTCTTCACTTTGTAATCTGCAGAGATACTCTCCGCTGGACCTAAGACTTAGTGCTTAAGGTTTCACTTCCCCCAGTTGATTCTGTTTTTGCAGTTCAAGTTTCTTTTTACCTTTAATAATTGTATTCTGTATGATATCCACATTGCTGCTTTCGATGCTATTATTAGAGGATATGTGGGATGAGTTATTCGTCCTAAAAGTAGATTCTTTTGGTTTGTTATGGTTTTTAAGCACCTTAGTCAATCAGTAAATCTTCCATTCTTTATTTTCTGGTCATGTTTACACGTGAAGCATTTCTTTCTGTGAGGAGGTTCATCATGTGAGAAATGCCTGATCTATCTTCTAGCTAAGTTTCTTTCTTAAGAAGCCGCGTTTATCAGAGAAATAGTCTCTGTTGGAAAACATACTCTGATTCTATGAAGTTACGCAAATTATATTCAAATAGCTGTTATTTCAGCATTAATCTCTGGTCTATTCCCTCATCCTTTATTTTTAAATCTCTCCATTTAATGGAGGGGAGAACTACCTTTCTTCTTTGCTGAGATCCCCGCGGTAAATCTGAATTACGTAAAACTTTTACTGGTCGCACACAGTATGCATTTTTTTCTTCACTCCAACCTCCTCACAATTGTTATTTAACTTATCAGAGACGTCGAGGTGATCCATTACGTGTATACATGGATCTTGAAGCTGGTAGAAAG</genome_strand>
        <mrna_strand>ATCTAAACAGTATGCTTATATTAGTCTTCCATGACAATATTAGGTCGAACAATCAAACAATTTTACTAATCTAACCACCGGTAGATGAAAACTGCCCCTTCAAGACTACCAATTATCAATTTCAGATCGATTATTTTGATAACCCCTTCCCCTCTCTCTCCTTGAGTGACCAAGGGAGGGAGAGAGAGAAAAAAAAAAGGTGATTTTTTTTGTGTATTCTTGAACTGAAAAATGCAATTGAAATCTGTCAACACATTTGCAATCACAATCATGTTGGGTTTTACACTTATCATTCTATTCTTCTCTGGATTTCTTGATTTCCCACTTCACACTTCTTCTTCAATCCCATCAACGAAAAATCAAATCTTGACCACCATCTCAGTTTCCGAGCCCGACCCTTTTAGTAACTTGTTGAGCACTTTTAAGAAATGGGATTCTCAAGTGGGTTGTGCTAAGTTTAGGGGGGAACATAAAGGGTTATTAGGAAATGGGTTGGTTGTTGGATTCTTCTTCTGGTTCTTTGCAAAATGTTGATGATGGTGAGTTGAAGTGTAATGAGCTAAAGATGGATCATGTGAGTGTATTAGTTAAAGGGTGGACTTGGATTCCTGATAATTTGGATAATTTGTACTCTTGTCGGTGTGGGCTTAGCTGTTTGTGGACTAAATCTTCGGTTGTTGCTGATAAACCTGATGCTTTGTTGTTTGAGACAGCTACTCCTCCTGTTGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACGTCGAGGTGATCCATTACGTGTATACATGGATCTTGAAGCTGGTAGAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E211584" ref_strand="+" ref_description="SGN-E211584 [cLEC-67-A12]">
      <seq>ctctctctccttgagtgaccaagggagggagagagagaaaaaaaaaaaggtgattttttttgtgtattcttgaactgaaaaatgcaattgaaatctgtcaacacatttgcaatcacaatcatgttgggttttacacttatcattctattcttctctggatttcttgatttcccacttcacacttcttcttcaatcccatcaacgaaaaatcaaatcttgaccaccatctcagtttccgagcccgacccttttagtaacttgttgagcacttttaagaaatgggattctcaagtgggttgtgctaagtttaggggggaacataaagggttattaggaaatgggttgttgttggattcttcttctggttctttgcaaaatgttgatgatggtgagttgaagtgtaatgagctaaagatggatcatgtgagtgtattagttaaagggtggacttggattcctgataatttggataatttgtactcttgtcggtgtgggcttagctgtttgtggactaaatcttcggttgttgctgataaacctgatgctttgttgtttgagacagctactcctcctgttgagagacgtcgaggtgatccattacgtgtatacatggatcttgaagctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0132E21.2" temp_strand="-" temp_description="C06SLm0132E21.2  AC211087.2 htgs_phase:3 submitted_to_sgn_as:C06SLm0132E21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="70252" stop="66758"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69952" g_stop="69375" g_length="578"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="579" r_length="579" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69374" i_stop="67104" i_length="2271">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67103" g_stop="67058" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="580" r_stop="625" r_length="46" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0132E21.2" gen_strand="-" ref_id="SGN-E211584" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>624</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0132E21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E211584" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69952" e_stop="69375"/>
          <exon e_start="67103" e_stop="67058"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCTCTCCTTGAGTGACCAAGGGAGGGAGAGAGAG-AAAAAAAAAAGGTGATTTTTTTTGTGTATTCTTGAACTGAAAAATGCAATTGAAATCTGTCAACACATTTGCAATCACAATCATGTTGGGTTTTACACTTATCATTCTATTCTTCTCTGGATTTCTTGATTTCCCACTTCACACTTCTTCTTCAATCCCATCAACGAAAAATCAAATCTTGACCACCATCTCAGTTTCCGAGCCCGACCCTTTTAGTAACTTGTTGAGCACTTTTAAGAAATGGGATTCTCAAGTGGGTTGTGCTAAGTTTAGGGGGGAACATAAAGGGTTATTAGGAAATGGGTTGTTGTTGGATTCTTCTTCTGGTTCTTTGCAAAATGTTGATGATGGTGAGTTGAAGTGTAATGAGCTAAAGATGGATCATGTGAGTGTATTAGTTAAAGGGTGGACTTGGATTCCTGATAATTTGGATAATTTGTACTCTTGTCGGTGTGGGCTTAGCTGTTTGTGGACTAAATCTTCGGTTGTTGCTGATAAACCTGATGCTTTGTTGTTTGAGACAGCTACTCCTCCTGTTGAGGTATTCTTCTTAATCAGTGTTAGCTCTTTTATCCAAATGATCACTCAATTAATTGTTATTATCTCGGGAATTCATGTTTTATCAATCTTAGCATGAATGAGTTCTTTGTTTTAATCAATAGTGATAATGCATCTAGATAAACCTATGTTTCTACTTTGTGGTATTTCCTGATTGTGTGGATTTTGGTTCGTTACTGTCTGAGGCTTTAAACGTCTATAATCCCTATGACAATGTCAGCTTAGCTCCAAAACATGACAGAATGAAGGCAAATGATCTATTAGCCTGATAAGACTAAGTTGCCGTTTTACACTTACATTAGTCAGGTGCTTGTGAAGGGCTTCTTATTCTGCTTAGTGTACGCCCGTGTGAAATAAACGTGATACATAGAGAAACTCTGGTGTCATAGAACCTCATTTCTCGTCAAAAAATGTAGCAAAATGCAAACAGATGACTCATGTATCCTACACCCTACTAATTTGGGTTGAGGCAGGGTCGGAAAAACTTCCTTCAACCTTGAAGGTATGCTGCTGGCTTTGCGCAAATGAAAGGATCTCTCCAAATAAAATTGACGAAATGTCTAATATTGTAAGATCAATATTGAACCTTGCTGGTATCAGTATATGATTTCTTATGCCCTCACCAAATGCTCTGAAGAAATTATCTAACTATGTTTAATTATGTGAAATCGATATATGTGAGTGCACTAAGCATTTTGAATTATCTACTTCTTATCAATATTTTTTCTGCTCATGTTTAGCTTCTTGTTAGTGGTTACATTCTGGGTCGTCTCCATCCTAAATTGGGTTTTGACCTGACATACTCCAGAAATACAATCTTGAAGCGTCAGTTCCTCTTCTCCTCAGCCCTGCAGCTCGTTGCACATCCTTATTGTTAAACTTTCCAAAGCTAAATAGTGGAGCTTGCAGCTATGATTTTTCTTTTTTGCATGGAATGGAAAATGAAACCTTTTGGCCTTCAGTTTTCGGATAGACTAACCCACAGTCACTTATTACTTACGTCTTACATACATGTCTCATAGACTATTGTTTTCAAATAGAACCTCAAGCAGCGATCTTGACCAACCAAATGGTTATCTTCCACGTATAGTTATTAACGTATGGAAAGAATTGAAAAAAATAATAATTTACCCTTTACTTGTAATGGTAGGATGATTATCCGGCTCTCTATGATTTTGGTAAAAGATACACCAGTGACCAGGCCCAAATGATTCATGATTCTTTCTTAGTTTAAATCTTATTTATGTATAAGGTGATCAAGGCCTTTCATTCAATTGTGATGAAAACCTAAATAGTTGTCCATTGTACTTGCTATGTTCTGTGAAATATTTTTGCTATGAATTGTTCCAACTTACCAATTCGTAAGTCTACTCATACAATACTGTGACCTATGCAAAATTCAAGTTCTTTATATGACTATTTTTTTGGATTCTGCACTTTTTTTTATGTTCTGGGATATAGGTATGTGCTGTAAGAACTTGTTAGGAAGTTAAATGCAACAATAGTTGTTGGCAGCTTGTTAGGACATCAAAGATAGCTATTTATTCTCATAGATGTTGAAGTACAGGCGGATAGAGTACCAAGTTTTTATTTAGTGGTCTTGCCACTTCTTCACTTTGTAATCTGCAGAGATACTCTCCGCTGGACCTAAGACTTAGTGCTTAAGGTTTCACTTCCCCCAGTTGATTCTGTTTTTGCAGTTCAAGTTTCTTTTTACCTTTAATAATTGTATTCTGTATGATATCCACATTGCTGCTTTCGATGCTATTATTAGAGGATATGTGGGATGAGTTATTCGTCCTAAAAGTAGATTCTTTTGGTTTGTTATGGTTTTTAAGCACCTTAGTCAATCAGTAAATCTTCCATTCTTTATTTTCTGGTCATGTTTACACGTGAAGCATTTCTTTCTGTGAGGAGGTTCATCATGTGAGAAATGCCTGATCTATCTTCTAGCTAAGTTTCTTTCTTAAGAAGCCGCGTTTATCAGAGAAATAGTCTCTGTTGGAAAACATACTCTGATTCTATGAAGTTACGCAAATTATATTCAAATAGCTGTTATTTCAGCATTAATCTCTGGTCTATTCCCTCATCCTTTATTTTTAAATCTCTCCATTTAATGGAGGGGAGAACTACCTTTCTTCTTTGCTGAGATCCCCGCGGTAAATCTGAATTACGTAAAACTTTTACTGGTCGCACACAGTATGCATTTTTTTCTTCACTCCAACCTCCTCACAATTGTTATTTAACTTATCAGAGACGTCGAGGTGATCCATTACGTGTATACATGGATCTTGAAGCTG</genome_strand>
        <mrna_strand>CTCTCTCTCCTTGAGTGACCAAGGGAGGGAGAGAGAGAAAAAAAAAAAGGTGATTTTTTTTGTGTATTCTTGAACTGAAAAATGCAATTGAAATCTGTCAACACATTTGCAATCACAATCATGTTGGGTTTTACACTTATCATTCTATTCTTCTCTGGATTTCTTGATTTCCCACTTCACACTTCTTCTTCAATCCCATCAACGAAAAATCAAATCTTGACCACCATCTCAGTTTCCGAGCCCGACCCTTTTAGTAACTTGTTGAGCACTTTTAAGAAATGGGATTCTCAAGTGGGTTGTGCTAAGTTTAGGGGGGAACATAAAGGGTTATTAGGAAATGGGTTGTTGTTGGATTCTTCTTCTGGTTCTTTGCAAAATGTTGATGATGGTGAGTTGAAGTGTAATGAGCTAAAGATGGATCATGTGAGTGTATTAGTTAAAGGGTGGACTTGGATTCCTGATAATTTGGATAATTTGTACTCTTGTCGGTGTGGGCTTAGCTGTTTGTGGACTAAATCTTCGGTTGTTGCTGATAAACCTGATGCTTTGTTGTTTGAGACAGCTACTCCTCCTGTTGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACGTCGAGGTGATCCATTACGTGTATACATGGATCTTGAAGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E304538" ref_strand="+" ref_description="SGN-E304538 [cLEX-11-I22]">
      <seq>tctaaacagtatgcttatattagtcttccatgacaatattaggtcgaacaatcaaacaattttactaatctaaccaccggtagatgaaaactgccccttcaagactaccaattatcaatttcagatcgattattttgataaccccttcccctctctctccttgagtgaccaagggagggagagagagaaaaaaaaaaggtgattttttttgtgtattcttgaactgaaaaatgcaattgaaatctgtcaacacatttgcaatcacaatcatgttgggttttacacttatcattctattcttctctggatttcttgatttcccacttcacacttcttcttcaatcccatcaacgaaaaatcaaatcttgaccaccatctcagtttccgagcccgacccttttagtaacttgttgagcacttttaagaaatgggattctcaagtgggttgtgctaagtttaggggggaacataaagggttattaggaaatgggttgttgttggattcttcttctggttctttgcaaaatgttgatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0132E21.2" temp_strand="-" temp_description="C06SLm0132E21.2  AC211087.2 htgs_phase:3 submitted_to_sgn_as:C06SLm0132E21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="70402" stop="69267"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70102" g_stop="69567" g_length="536"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="536" r_length="536" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0132E21.2" gen_strand="-" ref_id="SGN-E304538" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>536</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0132E21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E304538" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70102" e_stop="69567"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTAAACAGTATGCTTATATTAGTCTTCCATGACAATATTAGGTCGAACAATCAAACAATTTTACTAATCTAACCACCGGTAGATGAAAACTGCCCCTTCAAGACTACCAATTATCAATTTCAGATCGATTATTTTGATAACCCCTTCCCCTCTCTCTCCTTGAGTGACCAAGGGAGGGAGAGAGAGAAAAAAAAAAGGTGATTTTTTTTGTGTATTCTTGAACTGAAAAATGCAATTGAAATCTGTCAACACATTTGCAATCACAATCATGTTGGGTTTTACACTTATCATTCTATTCTTCTCTGGATTTCTTGATTTCCCACTTCACACTTCTTCTTCAATCCCATCAACGAAAAATCAAATCTTGACCACCATCTCAGTTTCCGAGCCCGACCCTTTTAGTAACTTGTTGAGCACTTTTAAGAAATGGGATTCTCAAGTGGGTTGTGCTAAGTTTAGGGGGGAACATAAAGGGTTATTAGGAAATGGGTTGTTGTTGGATTCTTCTTCTGGTTCTTTGCAAAATGTTGATGAT</genome_strand>
        <mrna_strand>TCTAAACAGTATGCTTATATTAGTCTTCCATGACAATATTAGGTCGAACAATCAAACAATTTTACTAATCTAACCACCGGTAGATGAAAACTGCCCCTTCAAGACTACCAATTATCAATTTCAGATCGATTATTTTGATAACCCCTTCCCCTCTCTCTCCTTGAGTGACCAAGGGAGGGAGAGAGAGAAAAAAAAAAGGTGATTTTTTTTGTGTATTCTTGAACTGAAAAATGCAATTGAAATCTGTCAACACATTTGCAATCACAATCATGTTGGGTTTTACACTTATCATTCTATTCTTCTCTGGATTTCTTGATTTCCCACTTCACACTTCTTCTTCAATCCCATCAACGAAAAATCAAATCTTGACCACCATCTCAGTTTCCGAGCCCGACCCTTTTAGTAACTTGTTGAGCACTTTTAAGAAATGGGATTCTCAAGTGGGTTGTGCTAAGTTTAGGGGGGAACATAAAGGGTTATTAGGAAATGGGTTGTTGTTGGATTCTTCTTCTGGTTCTTTGCAAAATGTTGATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E373077" ref_strand="+" ref_description="SGN-E373077 [TUS-32-G7]">
      <seq>agagaaagagacgaagaagagagagaaagcatgacgacgattcgtagattcagctgcaatgacttgcttcgcttcgcgtcagtgaatttggatcatcttactgaaactttcaacatgtcattttatatgacttacatggcaagatggccggattatttccatgttgcaaaagctcccggcggccacatcatgggatacattatgggaaaagttgaagggcaaggtgaatcttggcatggtcacgttactgcagtaactgtggctcctgaatatcggaggcagcaattagccaagaaattgatgtacctgctggaagaagtcagtgataagatcgataaggcttactttgtggacttgtttgtgagagcatcaaacacaccagctataaagatgtacgagaagcttgattacgtagtatataggcgagttttacgctattactcaggggaggaagatggtttggatatgagaaaggcactatcgcgagatgtagaaaagaagtctatcatccctcttaaacgaccggtaactccagatgaattggagtatgactgagtcggtaagagttgttaccccatgtaatcttatctttcaagaagctaagtttagggtatcgacaagtcttgtctagaaatgtatgagatgaagagtctgggttcttatctatagtactgttgtgccattaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0132E21.2" temp_strand="-" temp_description="C06SLm0132E21.2  AC211087.2 htgs_phase:3 submitted_to_sgn_as:C06SLm0132E21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="74186" stop="59290"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73886" g_stop="73779" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="108" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73778" i_stop="73522" i_length="257">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.757" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73521" g_stop="73431" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="199" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73430" i_stop="72494" i_length="937">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72493" g_stop="72361" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="332" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="72360" i_stop="71293" i_length="1068">
            <donor d_prob="0.765" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71292" g_stop="71223" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="402" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="71222" i_stop="71128" i_length="95">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="71127" g_stop="71067" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="463" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="71066" i_stop="70972" i_length="95">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="70971" g_stop="70749" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="464" r_stop="686" r_length="223" r_score="0.996"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="70748" i_stop="70422" i_length="327">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="70421" g_stop="70395" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="687" r_stop="713" r_length="27" r_score="0.667"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0132E21.2" gen_strand="-" ref_id="SGN-E373077" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0132E21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E373077" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73886" e_stop="73779"/>
          <exon e_start="73521" e_stop="73431"/>
          <exon e_start="72493" e_stop="72361"/>
          <exon e_start="71292" e_stop="71223"/>
          <exon e_start="71127" e_stop="71067"/>
          <exon e_start="70971" e_stop="70749"/>
          <exon e_start="70421" e_stop="70395"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGAAAGAGACGAAGAAGAGAGAGAAAGCATGACGACGATTCGTAGATTCAGCTGCAATGACTTGCTTCGCTTCGCGTCAGTGAATTTGGATCATCTTACTGAAACTGTAAGCCAATTGACCCTCTCTTTTTCCCCTAAATTTAGTTTTTTGTTTGTTTGTAAATGATTAACGAAAACTGTATAGTTAGTAGTTTTTTTCTGAATTAGAAACGAGTTTTAAGATGATTCTGAATGCCTGTTTGAAATTTGAAAGGAGTTTTAACATGATCTGTAGTAGTGTTTTGTGAATTTTGGATGAATTTTAGCATGATTTTTAGTGCCTTTTATGTTATAATTAAAGATGAGTTTTAATATCTGCTGCAGTTCAACATGTCATTTTATATGACTTACATGGCAAGATGGCCGGATTATTTCCATGTTGCAAAAGCTCCCGGCGGCCACATCATGGGATACAGTGAGTTATTCCAGTGTAGATTTTAAAGTTCATCACTTTTTTGGGTGATATAGCAGACGACTGATGATTATTTAATTTATATACAGATTGAGTTAAGTAAATTAGAAATATCAAATATAAGCTTGAAGGTAGGACTAAATGGTGGTAGATAGGAGCCAATTAAGTAGAAAGAGTCTAGAGTCCTTTAAGAATACAGAAAATCTGAAGATTAAGCAAAAATTGCAAGAATTGAAAATAATATGCCTAAAGCTCTCCCCTAACTCTTACCTTCTTTTTCAAGAGCAAATTCTTTTCTAAAGGTGGATGGAGGAAATGGGATTTTCTCGAGGAATATTCTTCAGCAGCACTGTTTGATGCAGGGTATACATTAACTTTGACTTTATAGCTTCTTTTTTTTTTTTGTCATATAGTTGGCAAAAAATTGATTGAATTTAGATCAAACAATAGGTTGTAGAAAGGAATGGCAAGGATAAGCATTCTGAATTTCATTTCTCTTTCAAGAATTGGGGATGGAAAGTAGATTTCATGGGCTGGTGTAGGCGGATTTCACTAATTCTATTCCCCTAGATGCTAACACTATGTTTCTGAAAATTTCCAGCAACAGATCCTAGGTCCAAGGCAGATGCAAGTAATCATTCTCTTATACTCCCTTCCGTGAAGAGGTTTCATTTACTCGTTGTTGGTTTTCTTTTAAAAAGGAAAATGTCGGACTTTATTGGTGACAAAGTGGTTAGAATGTAAATTATGTACTTAGTTTGGCACCGGCTGGTGTATTCTGGCCTCTTCATGGGCGACAAAGTGGTTAGAATGTCAATTATGTAGTTGTCTTATTATGGTTACTGTCTGGTGCATTTTGGTATGTTATCAATGTTTTGAAAAATTACTCCTAAGAAAACATTTGTTTTTTTAAAAACTAATGTCTGGCTCATGTGTACAGTTATGGGAAAAGTTGAAGGGCAAGGTGAATCTTGGCATGGTCACGTTACTGCAGTAACTGTGGCTCCTGAATATCGGAGGCAGCAATTAGCCAAGAAATTGATGTACCTGCTGGAAGAAGTCAGTGATAAGATGTAAGAACCTATACAGTGTAAAAACTGTGGCTCATGAACTCTGGTTGCATTATTGGAATTCATCTTTCCAAATTTATCATTTTGTTGTTTCACCGTTCTTTTTATGTATAGGCTTGCAGATTACCACAGAGTTGTATTTAATTTTCACCTGGCATGAGCAGTTTGTTTACAGTTTTCCCACTTGTTTGTTTTAATCTAGCTTGTGGTTTGTTTCACTAGACCTCCTAAAATCATGTTACAGACATTTCTACTCTGGTTTACTTCCTTGTATGTTATTGTAGCTTACAGAAATTGTGTAGTTACATTGTGAATTCTGCTCATAGAAGCTTAACTGATTTAATGAATGCATAGTAACACCATATACTTGTACAAGTACTGCAAATTTTGGGTCGTAAATCTATGCACGTCCTTTGCCTTTTTTAGGGAATAAATACATCATTTTAGCCTTCTAGGTGCTTTTATTCAGACCTTGGTACAGTGGATACTGGAACCTCCTTTCTTTTCCAGTTTGGTGGATACTGAAAGTGGTATCCTACTTCCCTTAGTCTTGTTATTCCAGGCATAGTTATGCTGAGTAAGTTTTAAGTTTTTTTTTTTTTTAAAAAAAGTTTATATTATGAAGTTACGAGGTTCAAAAAAAAAGTTATGTAAGTTCGTGTGATGGCATAAAAGTTGAGTGTGAAGTGATACAATTAGATCAGTTTCATCATAGCAGAAATTAACCTTGTGGAGCTCAGCTTTGTTTTCTTTCTCTTTAATATTTTTGCTACTTGGCTTCACCAGTCTTTGCATGATAACATGAAGTATAATATGATGGAGTGTAGAGTGAGATCAGTAACCTTCTCTTCTTTTGAACTTCCTAGAGTTTAGTTCTGAACTTTGTTCTATTTAAACTATAACGGGCTTAATTTGATCAAATCACTCATTTTGTGTGATGGTATAAAGTTAGTGTCAGGCTAGAACAATGACATTTTTTGTAAACTTTGCCGATGTTTGTGGCTACTAGATCTTTATAATTGTGTGATATGCTGTCCAAGCTTGGCACTAAGGTGGACTTTATTCTTGTAGCGATAAGGCTTACTTTGTGGACTTGTTTGTGAGAGCATCAAACACACCAGCTATAAAGATGTACGAGAAGGTAGTAACCTTTCCTGAGATTACTCTTGTTGTAGTTGTATCTGGATGGATATGTATTCTTGGTATTAATCCTGTTAACTGTTTCATCTTTTCCAGCTTGATTACGTAGTATATAGGCGAGTTTTACGCTATTACTCAGGGGAGGAAGATGGTTTGGGTAAGTTGCTGCATCTTACTGTGATATAGTTTCCATTTGCATTTTGCTCCTATGATGTCACTGTTATGACCATTGTTTCCTGTTTGGTGTTTCAGATATGAGAAAGGCACTATCGCGAGATGTAGAAAAGAAGTCTATCATCCCTCTTAAACGACCGGTAACTCCAGATGAATTGGAGTATGACTGAGTCGGTAAGAGTTGTTACCCCATGTAATCTTATCTTTCAAGAAGCTAAGTTTAGGGTATCGACAAGTCTTGTCTAGAAATGTATGAGATGAAGAGTCTGGGTTCTTATCTATAGTACTGTTGTGCCATTATGTTTAAGAACCAAGTGCTAGAATTTCTGGCCTTGTGTATTTGCTTGCATGCCATATGTTCTTTTAATATTTTAAATTGTTAAATTTTTGTGACTTATTGAACTTTTTCTGTAGTTTCTAAGTATGCAAATTATTTTCTTTTTAAAAATACTTAAATACACGATTAGATTTACAAAAAATTGACACTCAGAATTCGAACTAACAATGACAACAAATTCAATGTTATTCCATAAGTTAAAGTTTGGACCTACGTGGGCGTCAAGGGTTCATTTGAACCTCTATATATTTGTTCATATACTATTTTTCAACAACTTAAATCAAATGTGAGGACAACAACATAAAAATATACAAAAAT</genome_strand>
        <mrna_strand>AGAGAAAGAGACGAAGAAGAGAGAGAAAGCATGACGACGATTCGTAGATTCAGCTGCAATGACTTGCTTCGCTTCGCGTCAGTGAATTTGGATCATCTTACTGAAACT.................................................................................................................................................................................................................................................................TTCAACATGTCATTTTATATGACTTACATGGCAAGATGGCCGGATTATTTCCATGTTGCAAAAGCTCCCGGCGGCCACATCATGGGATACA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATGGGAAAAGTTGAAGGGCAAGGTGAATCTTGGCATGGTCACGTTACTGCAGTAACTGTGGCTCCTGAATATCGGAGGCAGCAATTAGCCAAGAAATTGATGTACCTGCTGGAAGAAGTCAGTGATAAGAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATAAGGCTTACTTTGTGGACTTGTTTGTGAGAGCATCAAACACACCAGCTATAAAGATGTACGAGAAG...............................................................................................CTTGATTACGTAGTATATAGGCGAGTTTTACGCTATTACTCAGGGGAGGAAGATGGTTTGG...............................................................................................ATATGAGAAAGGCACTATCGCGAGATGTAGAAAAGAAGTCTATCATCCCTCTTAAACGACCGGTAACTCCAGATGAATTGGAGTATGACTGAGTCGGTAAGAGTTGTTACCCCATGTAATCTTATCTTTCAAGAAGCTAAGTTTAGGGTATCGACAAGTCTTGTCTAGAAATGTATGAGATGAAGAGTCTGGGTTCTTATCTATAGTACTGTTGTGCCATTAA.......................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E236845" ref_strand="+" ref_description="SGN-E236845 [cLEL-7-N12](-)">
      <seq>gcttgattacgtagaatataggcgagttttacgctattactcaggggaggaagatggtttggatatgagaaaggcactatcgcgagatgtagaaaagaagtctatcatccctcttaaacgaccggttaactccagatgaattggagtatgactgagtcggtaagagttgttaccccatgtaatcttatctttcaagaagctaagtttagggtatcgacaagtcttgtctagaaatgtatgagatgaagagtctgggttcttatctatagtactgttgtgccattatgtttaagaaccaagtgctagaatttctggccttgtgtatttgcttgcatgccatatgttcttttaatattttaaattgttaaatttttgtgacttattgaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0132E21.2" temp_strand="-" temp_description="C06SLm0132E21.2  AC211087.2 htgs_phase:3 submitted_to_sgn_as:C06SLm0132E21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="71428" stop="70348"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71128" g_stop="71067" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71066" i_stop="70972" i_length="95">
            <donor d_prob="0.963" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70971" g_stop="70648" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="387" r_length="325" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="388" polyA_stop="402"/>
      <MATCH_line gen_id="C06SLm0132E21.2" gen_strand="-" ref_id="SGN-E236845" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>386</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0132E21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E236845" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71128" e_stop="71067"/>
          <exon e_start="70971" e_stop="70648"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTGATTACGTAGTATATAGGCGAGTTTTACGCTATTACTCAGGGGAGGAAGATGGTTTGGGTAAGTTGCTGCATCTTACTGTGATATAGTTTCCATTTGCATTTTGCTCCTATGATGTCACTGTTATGACCATTGTTTCCTGTTTGGTGTTTCAGATATGAGAAAGGCACTATCGCGAGATGTAGAAAAGAAGTCTATCATCCCTCTTAAACGACCGG-TAACTCCAGATGAATTGGAGTATGACTGAGTCGGTAAGAGTTGTTACCCCATGTAATCTTATCTTTCAAGAAGCTAAGTTTAGGGTATCGACAAGTCTTGTCTAGAAATGTATGAGATGAAGAGTCTGGGTTCTTATCTATAGTACTGTTGTGCCATTATGTTTAAGAACCAAGTGCTAGAATTTCTGGCCTTGTGTATTTGCTTGCATGCCATATGTTCTTTTAATATTTTAAATTGTTAAATTTTTGTGACTTATTGAA</genome_strand>
        <mrna_strand>GCTTGATTACGTAGAATATAGGCGAGTTTTACGCTATTACTCAGGGGAGGAAGATGGTTTGG...............................................................................................ATATGAGAAAGGCACTATCGCGAGATGTAGAAAAGAAGTCTATCATCCCTCTTAAACGACCGGTTAACTCCAGATGAATTGGAGTATGACTGAGTCGGTAAGAGTTGTTACCCCATGTAATCTTATCTTTCAAGAAGCTAAGTTTAGGGTATCGACAAGTCTTGTCTAGAAATGTATGAGATGAAGAGTCTGGGTTCTTATCTATAGTACTGTTGTGCCATTATGTTTAAGAACCAAGTGCTAGAATTTCTGGCCTTGTGTATTTGCTTGCATGCCATATGTTCTTTTAATATTTTAAATTGTTAAATTTTTGTGACTTATTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E237022" ref_strand="+" ref_description="SGN-E237022 [cLEL-7-N12](-)">
      <seq>tgattacgtagtatataggcgagttttacgctattactcaggggaggaagatggtttggatatgagaaaggcactatcgcgagatgtagaaaagaagtctatcatccctcttaaacgaccggtaactccagatgaattggagtatgactgagtcggtaagagttgttaccccatgtaatcttatctttcaagaagctaagtttagggtatcgacaagtcttgtctagaaatgtatgagatgaagagtctgggttcttatctatagtactgttgtgccattatgtttaagaaccaagtgctagaatttctggccttgtgtatttgcttgcatgccatatgttcttttaatattttaaattgttaaatttttgtgacttattgaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0132E21.2" temp_strand="-" temp_description="C06SLm0132E21.2  AC211087.2 htgs_phase:3 submitted_to_sgn_as:C06SLm0132E21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="71425" stop="70348"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71125" g_stop="71067" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71066" i_stop="70972" i_length="95">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70971" g_stop="70648" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="383" r_length="324" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="384" polyA_stop="398"/>
      <MATCH_line gen_id="C06SLm0132E21.2" gen_strand="-" ref_id="SGN-E237022" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>383</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0132E21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E237022" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71125" e_stop="71067"/>
          <exon e_start="70971" e_stop="70648"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATTACGTAGTATATAGGCGAGTTTTACGCTATTACTCAGGGGAGGAAGATGGTTTGGGTAAGTTGCTGCATCTTACTGTGATATAGTTTCCATTTGCATTTTGCTCCTATGATGTCACTGTTATGACCATTGTTTCCTGTTTGGTGTTTCAGATATGAGAAAGGCACTATCGCGAGATGTAGAAAAGAAGTCTATCATCCCTCTTAAACGACCGGTAACTCCAGATGAATTGGAGTATGACTGAGTCGGTAAGAGTTGTTACCCCATGTAATCTTATCTTTCAAGAAGCTAAGTTTAGGGTATCGACAAGTCTTGTCTAGAAATGTATGAGATGAAGAGTCTGGGTTCTTATCTATAGTACTGTTGTGCCATTATGTTTAAGAACCAAGTGCTAGAATTTCTGGCCTTGTGTATTTGCTTGCATGCCATATGTTCTTTTAATATTTTAAATTGTTAAATTTTTGTGACTTATTGAA</genome_strand>
        <mrna_strand>TGATTACGTAGTATATAGGCGAGTTTTACGCTATTACTCAGGGGAGGAAGATGGTTTGG...............................................................................................ATATGAGAAAGGCACTATCGCGAGATGTAGAAAAGAAGTCTATCATCCCTCTTAAACGACCGGTAACTCCAGATGAATTGGAGTATGACTGAGTCGGTAAGAGTTGTTACCCCATGTAATCTTATCTTTCAAGAAGCTAAGTTTAGGGTATCGACAAGTCTTGTCTAGAAATGTATGAGATGAAGAGTCTGGGTTCTTATCTATAGTACTGTTGTGCCATTATGTTTAAGAACCAAGTGCTAGAATTTCTGGCCTTGTGTATTTGCTTGCATGCCATATGTTCTTTTAATATTTTAAATTGTTAAATTTTTGTGACTTATTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E545744" ref_strand="+" ref_description="SGN-E545744 [TUS-68-M1](-)">
      <seq>gaggcagcaattagccaagaaattgatgtgccccctggaagaagtcagtgataagatcgataaggcttactttgtggacttgtttgtgagagcatcaaacacaccagctataaagatgtacgagaagcttaattacgtagtatataggcgagttttacgctattactcaggggaggaagatggtttggatatgagaaaggcactatcgcgagatgtagaaaagaagtctatcctccctcttaaacgaccggtaactccagatgaattggagtatgtctgagtcggtaagagttgttaccccatgtaatcttatctttcaagaagctaagtttagggtatcgtcaagtcttgtctagaaatgtatgagatgaagagtctgggttcttatctatagtactgccgcgccattatgtttaagaaccaagtgctagaatttctggccttgtgtatttgcttgcatgccatatgttcttttaatattttaaattgttaaatttttgtgacttaaaaaaaagaaaaaaaaaaaactcgaggggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0132E21.2" temp_strand="-" temp_description="C06SLm0132E21.2  AC211087.2 htgs_phase:3 submitted_to_sgn_as:C06SLm0132E21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="72717" stop="70353"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72417" g_stop="72361" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72360" i_stop="71293" i_length="1068">
            <donor d_prob="0.765" d_score="0.94"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71292" g_stop="71223" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="127" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71222" i_stop="71128" i_length="95">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71127" g_stop="71067" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="188" r_length="61" r_score="0.984"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71066" i_stop="70972" i_length="95">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70971" g_stop="70654" g_length="318"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="506" r_length="318" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="507" polyA_stop="527"/>
      <MATCH_line gen_id="C06SLm0132E21.2" gen_strand="-" ref_id="SGN-E545744" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>506</cumulative_length_of_scored_exons>
        <coverage percentage="0.942" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0132E21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E545744" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72417" e_stop="72361"/>
          <exon e_start="71292" e_stop="71223"/>
          <exon e_start="71127" e_stop="71067"/>
          <exon e_start="70971" e_stop="70654"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGCAGCAATTAGCCAAGAAATTGATGTACCTGCTGGAAGAAGTCAGTGATAAGATGTAAGAACCTATACAGTGTAAAAACTGTGGCTCATGAACTCTGGTTGCATTATTGGAATTCATCTTTCCAAATTTATCATTTTGTTGTTTCACCGTTCTTTTTATGTATAGGCTTGCAGATTACCACAGAGTTGTATTTAATTTTCACCTGGCATGAGCAGTTTGTTTACAGTTTTCCCACTTGTTTGTTTTAATCTAGCTTGTGGTTTGTTTCACTAGACCTCCTAAAATCATGTTACAGACATTTCTACTCTGGTTTACTTCCTTGTATGTTATTGTAGCTTACAGAAATTGTGTAGTTACATTGTGAATTCTGCTCATAGAAGCTTAACTGATTTAATGAATGCATAGTAACACCATATACTTGTACAAGTACTGCAAATTTTGGGTCGTAAATCTATGCACGTCCTTTGCCTTTTTTAGGGAATAAATACATCATTTTAGCCTTCTAGGTGCTTTTATTCAGACCTTGGTACAGTGGATACTGGAACCTCCTTTCTTTTCCAGTTTGGTGGATACTGAAAGTGGTATCCTACTTCCCTTAGTCTTGTTATTCCAGGCATAGTTATGCTGAGTAAGTTTTAAGTTTTTTTTTTTTTTAAAAAAAGTTTATATTATGAAGTTACGAGGTTCAAAAAAAAAGTTATGTAAGTTCGTGTGATGGCATAAAAGTTGAGTGTGAAGTGATACAATTAGATCAGTTTCATCATAGCAGAAATTAACCTTGTGGAGCTCAGCTTTGTTTTCTTTCTCTTTAATATTTTTGCTACTTGGCTTCACCAGTCTTTGCATGATAACATGAAGTATAATATGATGGAGTGTAGAGTGAGATCAGTAACCTTCTCTTCTTTTGAACTTCCTAGAGTTTAGTTCTGAACTTTGTTCTATTTAAACTATAACGGGCTTAATTTGATCAAATCACTCATTTTGTGTGATGGTATAAAGTTAGTGTCAGGCTAGAACAATGACATTTTTTGTAAACTTTGCCGATGTTTGTGGCTACTAGATCTTTATAATTGTGTGATATGCTGTCCAAGCTTGGCACTAAGGTGGACTTTATTCTTGTAGCGATAAGGCTTACTTTGTGGACTTGTTTGTGAGAGCATCAAACACACCAGCTATAAAGATGTACGAGAAGGTAGTAACCTTTCCTGAGATTACTCTTGTTGTAGTTGTATCTGGATGGATATGTATTCTTGGTATTAATCCTGTTAACTGTTTCATCTTTTCCAGCTTGATTACGTAGTATATAGGCGAGTTTTACGCTATTACTCAGGGGAGGAAGATGGTTTGGGTAAGTTGCTGCATCTTACTGTGATATAGTTTCCATTTGCATTTTGCTCCTATGATGTCACTGTTATGACCATTGTTTCCTGTTTGGTGTTTCAGATATGAGAAAGGCACTATCGCGAGATGTAGAAAAGAAGTCTATCATCCCTCTTAAACGACCGGTAACTCCAGATGAATTGGAGTATGACTGAGTCGGTAAGAGTTGTTACCCCATGTAATCTTATCTTTCAAGAAGCTAAGTTTAGGGTATCGACAAGTCTTGTCTAGAAATGTATGAGATGAAGAGTCTGGGTTCTTATCTATAGTACTGTTGTGCCATTATGTTTAAGAACCAAGTGCTAGAATTTCTGGCCTTGTGTATTTGCTTGCATGCCATATGTTCTTTTAATATTTTAAATTGTTAAATTTTTGTGACTT</genome_strand>
        <mrna_strand>GAGGCAGCAATTAGCCAAGAAATTGATGTGCCCCCTGGAAGAAGTCAGTGATAAGAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATAAGGCTTACTTTGTGGACTTGTTTGTGAGAGCATCAAACACACCAGCTATAAAGATGTACGAGAAG...............................................................................................CTTAATTACGTAGTATATAGGCGAGTTTTACGCTATTACTCAGGGGAGGAAGATGGTTTGG...............................................................................................ATATGAGAAAGGCACTATCGCGAGATGTAGAAAAGAAGTCTATCCTCCCTCTTAAACGACCGGTAACTCCAGATGAATTGGAGTATGTCTGAGTCGGTAAGAGTTGTTACCCCATGTAATCTTATCTTTCAAGAAGCTAAGTTTAGGGTATCGTCAAGTCTTGTCTAGAAATGTATGAGATGAAGAGTCTGGGTTCTTATCTATAGTACTGCCGCGCCATTATGTTTAAGAACCAAGTGCTAGAATTTCTGGCCTTGTGTATTTGCTTGCATGCCATATGTTCTTTTAATATTTTAAATTGTTAAATTTTTGTGACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E378775" ref_strand="+" ref_description="SGN-E378775 [TUS-32-G7]">
      <seq>agagaaagagacgaagaagagagagaaagcatgaccacgattcgtagattcagctgcaatgacttgcttcgcttcgcgtcagtgaatttggatcatcttactgaaactttcaacatgtcattttatatgacttacatggcaagatggccggattatttccatgttgcaaaagctcccggcggccacatcatgggatacattatgggaaaagttgaagggcaaggtgaatcttggcatggtcacgttactgcagtaactgtggctcctgaatatcggaggcagcaattagccaagaaattgatgtacctgctggaagaagtcagtgataagatcgataaggcttactttgtggacttgtttgtgagagcatcaaacacaccagctataaagatgtacgagaagcttgattacgtagtatataggcgagttttacgctattactcaggggaggaagatggtttggatatgagaaaggcactatcgcgagatgtagaaaagaagtctatcatccctcttaaacgaccggtaactccagatgaattggagtatgactgagtcggtaagagttgttaccccatgtaatcttatctttcaagaagctaagtttagggtatcgacaagtcttgtctagaaatgtatgagatgaagagtctgggttcttatctatagtactgttgtgccattaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0132E21.2" temp_strand="-" temp_description="C06SLm0132E21.2  AC211087.2 htgs_phase:3 submitted_to_sgn_as:C06SLm0132E21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="74186" stop="70450"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73886" g_stop="73779" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="108" r_length="108" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73778" i_stop="73522" i_length="257">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.757" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73521" g_stop="73431" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="199" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73430" i_stop="72494" i_length="937">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72493" g_stop="72361" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="332" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="72360" i_stop="71293" i_length="1068">
            <donor d_prob="0.765" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71292" g_stop="71223" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="402" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="71222" i_stop="71128" i_length="95">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="71127" g_stop="71067" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="463" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="71066" i_stop="70972" i_length="95">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="70971" g_stop="70747" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="464" r_stop="688" r_length="225" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0132E21.2" gen_strand="-" ref_id="SGN-E378775" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>688</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0132E21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E378775" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73886" e_stop="73779"/>
          <exon e_start="73521" e_stop="73431"/>
          <exon e_start="72493" e_stop="72361"/>
          <exon e_start="71292" e_stop="71223"/>
          <exon e_start="71127" e_stop="71067"/>
          <exon e_start="70971" e_stop="70747"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGAAAGAGACGAAGAAGAGAGAGAAAGCATGACGACGATTCGTAGATTCAGCTGCAATGACTTGCTTCGCTTCGCGTCAGTGAATTTGGATCATCTTACTGAAACTGTAAGCCAATTGACCCTCTCTTTTTCCCCTAAATTTAGTTTTTTGTTTGTTTGTAAATGATTAACGAAAACTGTATAGTTAGTAGTTTTTTTCTGAATTAGAAACGAGTTTTAAGATGATTCTGAATGCCTGTTTGAAATTTGAAAGGAGTTTTAACATGATCTGTAGTAGTGTTTTGTGAATTTTGGATGAATTTTAGCATGATTTTTAGTGCCTTTTATGTTATAATTAAAGATGAGTTTTAATATCTGCTGCAGTTCAACATGTCATTTTATATGACTTACATGGCAAGATGGCCGGATTATTTCCATGTTGCAAAAGCTCCCGGCGGCCACATCATGGGATACAGTGAGTTATTCCAGTGTAGATTTTAAAGTTCATCACTTTTTTGGGTGATATAGCAGACGACTGATGATTATTTAATTTATATACAGATTGAGTTAAGTAAATTAGAAATATCAAATATAAGCTTGAAGGTAGGACTAAATGGTGGTAGATAGGAGCCAATTAAGTAGAAAGAGTCTAGAGTCCTTTAAGAATACAGAAAATCTGAAGATTAAGCAAAAATTGCAAGAATTGAAAATAATATGCCTAAAGCTCTCCCCTAACTCTTACCTTCTTTTTCAAGAGCAAATTCTTTTCTAAAGGTGGATGGAGGAAATGGGATTTTCTCGAGGAATATTCTTCAGCAGCACTGTTTGATGCAGGGTATACATTAACTTTGACTTTATAGCTTCTTTTTTTTTTTTGTCATATAGTTGGCAAAAAATTGATTGAATTTAGATCAAACAATAGGTTGTAGAAAGGAATGGCAAGGATAAGCATTCTGAATTTCATTTCTCTTTCAAGAATTGGGGATGGAAAGTAGATTTCATGGGCTGGTGTAGGCGGATTTCACTAATTCTATTCCCCTAGATGCTAACACTATGTTTCTGAAAATTTCCAGCAACAGATCCTAGGTCCAAGGCAGATGCAAGTAATCATTCTCTTATACTCCCTTCCGTGAAGAGGTTTCATTTACTCGTTGTTGGTTTTCTTTTAAAAAGGAAAATGTCGGACTTTATTGGTGACAAAGTGGTTAGAATGTAAATTATGTACTTAGTTTGGCACCGGCTGGTGTATTCTGGCCTCTTCATGGGCGACAAAGTGGTTAGAATGTCAATTATGTAGTTGTCTTATTATGGTTACTGTCTGGTGCATTTTGGTATGTTATCAATGTTTTGAAAAATTACTCCTAAGAAAACATTTGTTTTTTTAAAAACTAATGTCTGGCTCATGTGTACAGTTATGGGAAAAGTTGAAGGGCAAGGTGAATCTTGGCATGGTCACGTTACTGCAGTAACTGTGGCTCCTGAATATCGGAGGCAGCAATTAGCCAAGAAATTGATGTACCTGCTGGAAGAAGTCAGTGATAAGATGTAAGAACCTATACAGTGTAAAAACTGTGGCTCATGAACTCTGGTTGCATTATTGGAATTCATCTTTCCAAATTTATCATTTTGTTGTTTCACCGTTCTTTTTATGTATAGGCTTGCAGATTACCACAGAGTTGTATTTAATTTTCACCTGGCATGAGCAGTTTGTTTACAGTTTTCCCACTTGTTTGTTTTAATCTAGCTTGTGGTTTGTTTCACTAGACCTCCTAAAATCATGTTACAGACATTTCTACTCTGGTTTACTTCCTTGTATGTTATTGTAGCTTACAGAAATTGTGTAGTTACATTGTGAATTCTGCTCATAGAAGCTTAACTGATTTAATGAATGCATAGTAACACCATATACTTGTACAAGTACTGCAAATTTTGGGTCGTAAATCTATGCACGTCCTTTGCCTTTTTTAGGGAATAAATACATCATTTTAGCCTTCTAGGTGCTTTTATTCAGACCTTGGTACAGTGGATACTGGAACCTCCTTTCTTTTCCAGTTTGGTGGATACTGAAAGTGGTATCCTACTTCCCTTAGTCTTGTTATTCCAGGCATAGTTATGCTGAGTAAGTTTTAAGTTTTTTTTTTTTTTAAAAAAAGTTTATATTATGAAGTTACGAGGTTCAAAAAAAAAGTTATGTAAGTTCGTGTGATGGCATAAAAGTTGAGTGTGAAGTGATACAATTAGATCAGTTTCATCATAGCAGAAATTAACCTTGTGGAGCTCAGCTTTGTTTTCTTTCTCTTTAATATTTTTGCTACTTGGCTTCACCAGTCTTTGCATGATAACATGAAGTATAATATGATGGAGTGTAGAGTGAGATCAGTAACCTTCTCTTCTTTTGAACTTCCTAGAGTTTAGTTCTGAACTTTGTTCTATTTAAACTATAACGGGCTTAATTTGATCAAATCACTCATTTTGTGTGATGGTATAAAGTTAGTGTCAGGCTAGAACAATGACATTTTTTGTAAACTTTGCCGATGTTTGTGGCTACTAGATCTTTATAATTGTGTGATATGCTGTCCAAGCTTGGCACTAAGGTGGACTTTATTCTTGTAGCGATAAGGCTTACTTTGTGGACTTGTTTGTGAGAGCATCAAACACACCAGCTATAAAGATGTACGAGAAGGTAGTAACCTTTCCTGAGATTACTCTTGTTGTAGTTGTATCTGGATGGATATGTATTCTTGGTATTAATCCTGTTAACTGTTTCATCTTTTCCAGCTTGATTACGTAGTATATAGGCGAGTTTTACGCTATTACTCAGGGGAGGAAGATGGTTTGGGTAAGTTGCTGCATCTTACTGTGATATAGTTTCCATTTGCATTTTGCTCCTATGATGTCACTGTTATGACCATTGTTTCCTGTTTGGTGTTTCAGATATGAGAAAGGCACTATCGCGAGATGTAGAAAAGAAGTCTATCATCCCTCTTAAACGACCGGTAACTCCAGATGAATTGGAGTATGACTGAGTCGGTAAGAGTTGTTACCCCATGTAATCTTATCTTTCAAGAAGCTAAGTTTAGGGTATCGACAAGTCTTGTCTAGAAATGTATGAGATGAAGAGTCTGGGTTCTTATCTATAGTACTGTTGTGCCATTATGT</genome_strand>
        <mrna_strand>AGAGAAAGAGACGAAGAAGAGAGAGAAAGCATGACCACGATTCGTAGATTCAGCTGCAATGACTTGCTTCGCTTCGCGTCAGTGAATTTGGATCATCTTACTGAAACT.................................................................................................................................................................................................................................................................TTCAACATGTCATTTTATATGACTTACATGGCAAGATGGCCGGATTATTTCCATGTTGCAAAAGCTCCCGGCGGCCACATCATGGGATACA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATGGGAAAAGTTGAAGGGCAAGGTGAATCTTGGCATGGTCACGTTACTGCAGTAACTGTGGCTCCTGAATATCGGAGGCAGCAATTAGCCAAGAAATTGATGTACCTGCTGGAAGAAGTCAGTGATAAGAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATAAGGCTTACTTTGTGGACTTGTTTGTGAGAGCATCAAACACACCAGCTATAAAGATGTACGAGAAG...............................................................................................CTTGATTACGTAGTATATAGGCGAGTTTTACGCTATTACTCAGGGGAGGAAGATGGTTTGG...............................................................................................ATATGAGAAAGGCACTATCGCGAGATGTAGAAAAGAAGTCTATCATCCCTCTTAAACGACCGGTAACTCCAGATGAATTGGAGTATGACTGAGTCGGTAAGAGTTGTTACCCCATGTAATCTTATCTTTCAAGAAGCTAAGTTTAGGGTATCGACAAGTCTTGTCTAGAAATGTATGAGATGAAGAGTCTGGGTTCTTATCTATAGTACTGTTGTGCCATTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E373076" ref_strand="+" ref_description="SGN-E373076 [TUS-32-G7](-)">
      <seq>aagcatgacgacgattcgtagattcagctgcaatgacttgcttcgcttcgcgtcagtgaatttggatcatcttactgaaactttcaacatgtcattttatatgacttacatggcaagatggccggattatttccatgttgcaaaagctcccggcggccccatcatgggatacattatgggaaaagttgaagggcaaggtgaatcttggcatggtcacgttactgcagtaactgtggctcctgaatatcggaggcagcaattagccaagaaattgatgtacctgctggaaaaagtcagtgataagatcgataaggcttactttgtggacttgtttgtgagagcatcaaaccccccagctataaaaatgtacgagaagcttgattacgtagtatataggcgagttttacgctattactcaggggaggaaaatggtttggatatgagaaaggcactatcgcgagatgtaaaaaaaaagtttatcatcccttttaaacgaccggtaactccaaatgaattggagtatgactgagtcggtaagagttgttaccccatgtaattttatctttcaagaagctaagtttagggtatcgacaagtcttgtctaaaaatgtatgagatgaagagtttgggtttttatctatagtactgttgtgccctttaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0132E21.2" temp_strand="-" temp_description="C06SLm0132E21.2  AC211087.2 htgs_phase:3 submitted_to_sgn_as:C06SLm0132E21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="74160" stop="70451"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73860" g_stop="73779" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73778" i_stop="73522" i_length="257">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.757" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73521" g_stop="73431" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="173" r_length="91" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73430" i_stop="72494" i_length="937">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72493" g_stop="72361" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="306" r_length="133" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="72360" i_stop="71293" i_length="1068">
            <donor d_prob="0.765" d_score="0.98"/>
            <acceptor a_prob="0.979" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71292" g_stop="71223" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="376" r_length="70" r_score="0.957"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="71222" i_stop="71128" i_length="95">
            <donor d_prob="0.968" d_score="0.94"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="71127" g_stop="71067" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="437" r_length="61" r_score="0.984"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="71066" i_stop="70972" i_length="95">
            <donor d_prob="0.963" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="70971" g_stop="70754" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="655" r_length="218" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="660" polyA_stop="687"/>
      <MATCH_line gen_id="C06SLm0132E21.2" gen_strand="-" ref_id="SGN-E373076" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>655</cumulative_length_of_scored_exons>
        <coverage percentage="0.953" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0132E21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E373076" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73860" e_stop="73779"/>
          <exon e_start="73521" e_stop="73431"/>
          <exon e_start="72493" e_stop="72361"/>
          <exon e_start="71292" e_stop="71223"/>
          <exon e_start="71127" e_stop="71067"/>
          <exon e_start="70971" e_stop="70754"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCATGACGACGATTCGTAGATTCAGCTGCAATGACTTGCTTCGCTTCGCGTCAGTGAATTTGGATCATCTTACTGAAACTGTAAGCCAATTGACCCTCTCTTTTTCCCCTAAATTTAGTTTTTTGTTTGTTTGTAAATGATTAACGAAAACTGTATAGTTAGTAGTTTTTTTCTGAATTAGAAACGAGTTTTAAGATGATTCTGAATGCCTGTTTGAAATTTGAAAGGAGTTTTAACATGATCTGTAGTAGTGTTTTGTGAATTTTGGATGAATTTTAGCATGATTTTTAGTGCCTTTTATGTTATAATTAAAGATGAGTTTTAATATCTGCTGCAGTTCAACATGTCATTTTATATGACTTACATGGCAAGATGGCCGGATTATTTCCATGTTGCAAAAGCTCCCGGCGGCCACATCATGGGATACAGTGAGTTATTCCAGTGTAGATTTTAAAGTTCATCACTTTTTTGGGTGATATAGCAGACGACTGATGATTATTTAATTTATATACAGATTGAGTTAAGTAAATTAGAAATATCAAATATAAGCTTGAAGGTAGGACTAAATGGTGGTAGATAGGAGCCAATTAAGTAGAAAGAGTCTAGAGTCCTTTAAGAATACAGAAAATCTGAAGATTAAGCAAAAATTGCAAGAATTGAAAATAATATGCCTAAAGCTCTCCCCTAACTCTTACCTTCTTTTTCAAGAGCAAATTCTTTTCTAAAGGTGGATGGAGGAAATGGGATTTTCTCGAGGAATATTCTTCAGCAGCACTGTTTGATGCAGGGTATACATTAACTTTGACTTTATAGCTTCTTTTTTTTTTTTGTCATATAGTTGGCAAAAAATTGATTGAATTTAGATCAAACAATAGGTTGTAGAAAGGAATGGCAAGGATAAGCATTCTGAATTTCATTTCTCTTTCAAGAATTGGGGATGGAAAGTAGATTTCATGGGCTGGTGTAGGCGGATTTCACTAATTCTATTCCCCTAGATGCTAACACTATGTTTCTGAAAATTTCCAGCAACAGATCCTAGGTCCAAGGCAGATGCAAGTAATCATTCTCTTATACTCCCTTCCGTGAAGAGGTTTCATTTACTCGTTGTTGGTTTTCTTTTAAAAAGGAAAATGTCGGACTTTATTGGTGACAAAGTGGTTAGAATGTAAATTATGTACTTAGTTTGGCACCGGCTGGTGTATTCTGGCCTCTTCATGGGCGACAAAGTGGTTAGAATGTCAATTATGTAGTTGTCTTATTATGGTTACTGTCTGGTGCATTTTGGTATGTTATCAATGTTTTGAAAAATTACTCCTAAGAAAACATTTGTTTTTTTAAAAACTAATGTCTGGCTCATGTGTACAGTTATGGGAAAAGTTGAAGGGCAAGGTGAATCTTGGCATGGTCACGTTACTGCAGTAACTGTGGCTCCTGAATATCGGAGGCAGCAATTAGCCAAGAAATTGATGTACCTGCTGGAAGAAGTCAGTGATAAGATGTAAGAACCTATACAGTGTAAAAACTGTGGCTCATGAACTCTGGTTGCATTATTGGAATTCATCTTTCCAAATTTATCATTTTGTTGTTTCACCGTTCTTTTTATGTATAGGCTTGCAGATTACCACAGAGTTGTATTTAATTTTCACCTGGCATGAGCAGTTTGTTTACAGTTTTCCCACTTGTTTGTTTTAATCTAGCTTGTGGTTTGTTTCACTAGACCTCCTAAAATCATGTTACAGACATTTCTACTCTGGTTTACTTCCTTGTATGTTATTGTAGCTTACAGAAATTGTGTAGTTACATTGTGAATTCTGCTCATAGAAGCTTAACTGATTTAATGAATGCATAGTAACACCATATACTTGTACAAGTACTGCAAATTTTGGGTCGTAAATCTATGCACGTCCTTTGCCTTTTTTAGGGAATAAATACATCATTTTAGCCTTCTAGGTGCTTTTATTCAGACCTTGGTACAGTGGATACTGGAACCTCCTTTCTTTTCCAGTTTGGTGGATACTGAAAGTGGTATCCTACTTCCCTTAGTCTTGTTATTCCAGGCATAGTTATGCTGAGTAAGTTTTAAGTTTTTTTTTTTTTTAAAAAAAGTTTATATTATGAAGTTACGAGGTTCAAAAAAAAAGTTATGTAAGTTCGTGTGATGGCATAAAAGTTGAGTGTGAAGTGATACAATTAGATCAGTTTCATCATAGCAGAAATTAACCTTGTGGAGCTCAGCTTTGTTTTCTTTCTCTTTAATATTTTTGCTACTTGGCTTCACCAGTCTTTGCATGATAACATGAAGTATAATATGATGGAGTGTAGAGTGAGATCAGTAACCTTCTCTTCTTTTGAACTTCCTAGAGTTTAGTTCTGAACTTTGTTCTATTTAAACTATAACGGGCTTAATTTGATCAAATCACTCATTTTGTGTGATGGTATAAAGTTAGTGTCAGGCTAGAACAATGACATTTTTTGTAAACTTTGCCGATGTTTGTGGCTACTAGATCTTTATAATTGTGTGATATGCTGTCCAAGCTTGGCACTAAGGTGGACTTTATTCTTGTAGCGATAAGGCTTACTTTGTGGACTTGTTTGTGAGAGCATCAAACACACCAGCTATAAAGATGTACGAGAAGGTAGTAACCTTTCCTGAGATTACTCTTGTTGTAGTTGTATCTGGATGGATATGTATTCTTGGTATTAATCCTGTTAACTGTTTCATCTTTTCCAGCTTGATTACGTAGTATATAGGCGAGTTTTACGCTATTACTCAGGGGAGGAAGATGGTTTGGGTAAGTTGCTGCATCTTACTGTGATATAGTTTCCATTTGCATTTTGCTCCTATGATGTCACTGTTATGACCATTGTTTCCTGTTTGGTGTTTCAGATATGAGAAAGGCACTATCGCGAGATGTAGAAAAGAAGTCTATCATCCCTCTTAAACGACCGGTAACTCCAGATGAATTGGAGTATGACTGAGTCGGTAAGAGTTGTTACCCCATGTAATCTTATCTTTCAAGAAGCTAAGTTTAGGGTATCGACAAGTCTTGTCTAGAAATGTATGAGATGAAGAGTCTGGGTTCTTATCTATAGTACTGTTGTGCC</genome_strand>
        <mrna_strand>AAGCATGACGACGATTCGTAGATTCAGCTGCAATGACTTGCTTCGCTTCGCGTCAGTGAATTTGGATCATCTTACTGAAACT.................................................................................................................................................................................................................................................................TTCAACATGTCATTTTATATGACTTACATGGCAAGATGGCCGGATTATTTCCATGTTGCAAAAGCTCCCGGCGGCCCCATCATGGGATACA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATGGGAAAAGTTGAAGGGCAAGGTGAATCTTGGCATGGTCACGTTACTGCAGTAACTGTGGCTCCTGAATATCGGAGGCAGCAATTAGCCAAGAAATTGATGTACCTGCTGGAAAAAGTCAGTGATAAGAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATAAGGCTTACTTTGTGGACTTGTTTGTGAGAGCATCAAACCCCCCAGCTATAAAAATGTACGAGAAG...............................................................................................CTTGATTACGTAGTATATAGGCGAGTTTTACGCTATTACTCAGGGGAGGAAAATGGTTTGG...............................................................................................ATATGAGAAAGGCACTATCGCGAGATGTAAAAAAAAAGTTTATCATCCCTTTTAAACGACCGGTAACTCCAAATGAATTGGAGTATGACTGAGTCGGTAAGAGTTGTTACCCCATGTAATTTTATCTTTCAAGAAGCTAAGTTTAGGGTATCGACAAGTCTTGTCTAAAAATGTATGAGATGAAGAGTTTGGGTTTTTATCTATAGTACTGTTGTGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E324927" ref_strand="+" ref_description="SGN-E324927 [cTOC-11-C8]">
      <seq>agaaagagacgaagaagagagagaaagcatgacgacgattcgtagattcagctgcaatgacttgcttcgcttcgcgtcagtgaatttggatcatcttactgaaactttcaacatgtcattttatatgacttacatggcaagatggccggattatttccatgttgcaaaagctcccggcggccacatcatgggatacattatgggaaaagttgaagggcaaggtgaatcttggcatggtcacgttactgcagtaactgtggctcctgaatatcggaggcagcaattagccaagaaattgatgtacctgctggaagaagtcagtgataagatcgataaggcttactttgtggacttgtttgtgagagcatcaaacacaccagctataaagatgtacgagaagcttgattacgtagtatataggcgagttttacgctattactcaggggaggaagatggtttggatatgagaaaggcactatcgcgagatgtagaaaagaagtctatcatccctcttaaacgaccggtaactccagatgaattggagtatgact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0132E21.2" temp_strand="-" temp_description="C06SLm0132E21.2  AC211087.2 htgs_phase:3 submitted_to_sgn_as:C06SLm0132E21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="74184" stop="70582"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73884" g_stop="73779" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="106" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73778" i_stop="73522" i_length="257">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.757" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73521" g_stop="73431" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="197" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73430" i_stop="72494" i_length="937">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72493" g_stop="72361" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="330" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="72360" i_stop="71293" i_length="1068">
            <donor d_prob="0.765" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71292" g_stop="71223" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="400" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="71222" i_stop="71128" i_length="95">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="71127" g_stop="71067" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="461" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="71066" i_stop="70972" i_length="95">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="70971" g_stop="70882" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="462" r_stop="551" r_length="90" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0132E21.2" gen_strand="-" ref_id="SGN-E324927" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0132E21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E324927" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73884" e_stop="73779"/>
          <exon e_start="73521" e_stop="73431"/>
          <exon e_start="72493" e_stop="72361"/>
          <exon e_start="71292" e_stop="71223"/>
          <exon e_start="71127" e_stop="71067"/>
          <exon e_start="70971" e_stop="70882"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAGAGACGAAGAAGAGAGAGAAAGCATGACGACGATTCGTAGATTCAGCTGCAATGACTTGCTTCGCTTCGCGTCAGTGAATTTGGATCATCTTACTGAAACTGTAAGCCAATTGACCCTCTCTTTTTCCCCTAAATTTAGTTTTTTGTTTGTTTGTAAATGATTAACGAAAACTGTATAGTTAGTAGTTTTTTTCTGAATTAGAAACGAGTTTTAAGATGATTCTGAATGCCTGTTTGAAATTTGAAAGGAGTTTTAACATGATCTGTAGTAGTGTTTTGTGAATTTTGGATGAATTTTAGCATGATTTTTAGTGCCTTTTATGTTATAATTAAAGATGAGTTTTAATATCTGCTGCAGTTCAACATGTCATTTTATATGACTTACATGGCAAGATGGCCGGATTATTTCCATGTTGCAAAAGCTCCCGGCGGCCACATCATGGGATACAGTGAGTTATTCCAGTGTAGATTTTAAAGTTCATCACTTTTTTGGGTGATATAGCAGACGACTGATGATTATTTAATTTATATACAGATTGAGTTAAGTAAATTAGAAATATCAAATATAAGCTTGAAGGTAGGACTAAATGGTGGTAGATAGGAGCCAATTAAGTAGAAAGAGTCTAGAGTCCTTTAAGAATACAGAAAATCTGAAGATTAAGCAAAAATTGCAAGAATTGAAAATAATATGCCTAAAGCTCTCCCCTAACTCTTACCTTCTTTTTCAAGAGCAAATTCTTTTCTAAAGGTGGATGGAGGAAATGGGATTTTCTCGAGGAATATTCTTCAGCAGCACTGTTTGATGCAGGGTATACATTAACTTTGACTTTATAGCTTCTTTTTTTTTTTTGTCATATAGTTGGCAAAAAATTGATTGAATTTAGATCAAACAATAGGTTGTAGAAAGGAATGGCAAGGATAAGCATTCTGAATTTCATTTCTCTTTCAAGAATTGGGGATGGAAAGTAGATTTCATGGGCTGGTGTAGGCGGATTTCACTAATTCTATTCCCCTAGATGCTAACACTATGTTTCTGAAAATTTCCAGCAACAGATCCTAGGTCCAAGGCAGATGCAAGTAATCATTCTCTTATACTCCCTTCCGTGAAGAGGTTTCATTTACTCGTTGTTGGTTTTCTTTTAAAAAGGAAAATGTCGGACTTTATTGGTGACAAAGTGGTTAGAATGTAAATTATGTACTTAGTTTGGCACCGGCTGGTGTATTCTGGCCTCTTCATGGGCGACAAAGTGGTTAGAATGTCAATTATGTAGTTGTCTTATTATGGTTACTGTCTGGTGCATTTTGGTATGTTATCAATGTTTTGAAAAATTACTCCTAAGAAAACATTTGTTTTTTTAAAAACTAATGTCTGGCTCATGTGTACAGTTATGGGAAAAGTTGAAGGGCAAGGTGAATCTTGGCATGGTCACGTTACTGCAGTAACTGTGGCTCCTGAATATCGGAGGCAGCAATTAGCCAAGAAATTGATGTACCTGCTGGAAGAAGTCAGTGATAAGATGTAAGAACCTATACAGTGTAAAAACTGTGGCTCATGAACTCTGGTTGCATTATTGGAATTCATCTTTCCAAATTTATCATTTTGTTGTTTCACCGTTCTTTTTATGTATAGGCTTGCAGATTACCACAGAGTTGTATTTAATTTTCACCTGGCATGAGCAGTTTGTTTACAGTTTTCCCACTTGTTTGTTTTAATCTAGCTTGTGGTTTGTTTCACTAGACCTCCTAAAATCATGTTACAGACATTTCTACTCTGGTTTACTTCCTTGTATGTTATTGTAGCTTACAGAAATTGTGTAGTTACATTGTGAATTCTGCTCATAGAAGCTTAACTGATTTAATGAATGCATAGTAACACCATATACTTGTACAAGTACTGCAAATTTTGGGTCGTAAATCTATGCACGTCCTTTGCCTTTTTTAGGGAATAAATACATCATTTTAGCCTTCTAGGTGCTTTTATTCAGACCTTGGTACAGTGGATACTGGAACCTCCTTTCTTTTCCAGTTTGGTGGATACTGAAAGTGGTATCCTACTTCCCTTAGTCTTGTTATTCCAGGCATAGTTATGCTGAGTAAGTTTTAAGTTTTTTTTTTTTTTAAAAAAAGTTTATATTATGAAGTTACGAGGTTCAAAAAAAAAGTTATGTAAGTTCGTGTGATGGCATAAAAGTTGAGTGTGAAGTGATACAATTAGATCAGTTTCATCATAGCAGAAATTAACCTTGTGGAGCTCAGCTTTGTTTTCTTTCTCTTTAATATTTTTGCTACTTGGCTTCACCAGTCTTTGCATGATAACATGAAGTATAATATGATGGAGTGTAGAGTGAGATCAGTAACCTTCTCTTCTTTTGAACTTCCTAGAGTTTAGTTCTGAACTTTGTTCTATTTAAACTATAACGGGCTTAATTTGATCAAATCACTCATTTTGTGTGATGGTATAAAGTTAGTGTCAGGCTAGAACAATGACATTTTTTGTAAACTTTGCCGATGTTTGTGGCTACTAGATCTTTATAATTGTGTGATATGCTGTCCAAGCTTGGCACTAAGGTGGACTTTATTCTTGTAGCGATAAGGCTTACTTTGTGGACTTGTTTGTGAGAGCATCAAACACACCAGCTATAAAGATGTACGAGAAGGTAGTAACCTTTCCTGAGATTACTCTTGTTGTAGTTGTATCTGGATGGATATGTATTCTTGGTATTAATCCTGTTAACTGTTTCATCTTTTCCAGCTTGATTACGTAGTATATAGGCGAGTTTTACGCTATTACTCAGGGGAGGAAGATGGTTTGGGTAAGTTGCTGCATCTTACTGTGATATAGTTTCCATTTGCATTTTGCTCCTATGATGTCACTGTTATGACCATTGTTTCCTGTTTGGTGTTTCAGATATGAGAAAGGCACTATCGCGAGATGTAGAAAAGAAGTCTATCATCCCTCTTAAACGACCGGTAACTCCAGATGAATTGGAGTATGACT</genome_strand>
        <mrna_strand>AGAAAGAGACGAAGAAGAGAGAGAAAGCATGACGACGATTCGTAGATTCAGCTGCAATGACTTGCTTCGCTTCGCGTCAGTGAATTTGGATCATCTTACTGAAACT.................................................................................................................................................................................................................................................................TTCAACATGTCATTTTATATGACTTACATGGCAAGATGGCCGGATTATTTCCATGTTGCAAAAGCTCCCGGCGGCCACATCATGGGATACA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATGGGAAAAGTTGAAGGGCAAGGTGAATCTTGGCATGGTCACGTTACTGCAGTAACTGTGGCTCCTGAATATCGGAGGCAGCAATTAGCCAAGAAATTGATGTACCTGCTGGAAGAAGTCAGTGATAAGAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATAAGGCTTACTTTGTGGACTTGTTTGTGAGAGCATCAAACACACCAGCTATAAAGATGTACGAGAAG...............................................................................................CTTGATTACGTAGTATATAGGCGAGTTTTACGCTATTACTCAGGGGAGGAAGATGGTTTGG...............................................................................................ATATGAGAAAGGCACTATCGCGAGATGTAGAAAAGAAGTCTATCATCCCTCTTAAACGACCGGTAACTCCAGATGAATTGGAGTATGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E549257" ref_strand="+" ref_description="SGN-E549257 [TUS-68-M1]">
      <seq>tatagagagaaagagacgaagaagagagagaaaggtgacgactattcgtaaattcagctgcaatgacttgcttcgcttcacgtcagtgaatttggatcatcttactgaaactttcaacatgacattttatatgacttacatggaaagatggcgcgagattatttccatgttcgcaaaagctcccggcggccacatacaagggatacattatgggaaaagttgaggggcaaggtgaatcttggcatggacacgttactgcagtaactgtggctcctgaatatcggacgcagctattagtcaagaaattgatgtaccagctggaagaagtcagtgataaaatcgataaggcttactttgtggacttgtttgtgagagcatcaaacacaccagctataaagatgtacgataagcttgattacgtagcatataggcgagttttacgctattactcatgggaggaagatggtttggatatgagaaaggcactatcgcgagatgtagaatagaagactatcatccctcttaaacga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0132E21.2" temp_strand="-" temp_description="C06SLm0132E21.2  AC211087.2 htgs_phase:3 submitted_to_sgn_as:C06SLm0132E21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="74191" stop="70613"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73891" g_stop="73779" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73778" i_stop="73522" i_length="257">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.757" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73521" g_stop="73431" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="207" r_length="95" r_score="0.879"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73430" i_stop="72494" i_length="937">
            <donor d_prob="0.989" d_score="0.90"/>
            <acceptor a_prob="0.993" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72493" g_stop="72361" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="340" r_length="133" r_score="0.947"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="72360" i_stop="71293" i_length="1068">
            <donor d_prob="0.765" d_score="0.92"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71292" g_stop="71223" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="410" r_length="70" r_score="0.986"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="71222" i_stop="71128" i_length="95">
            <donor d_prob="0.968" d_score="0.98"/>
            <acceptor a_prob="0.947" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="71127" g_stop="71067" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="471" r_length="61" r_score="0.967"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="71066" i_stop="70972" i_length="95">
            <donor d_prob="0.963" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="70971" g_stop="70913" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="472" r_stop="530" r_length="59" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0132E21.2" gen_strand="-" ref_id="SGN-E549257" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0132E21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E549257" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73891" e_stop="73779"/>
          <exon e_start="73521" e_stop="73431"/>
          <exon e_start="72493" e_stop="72361"/>
          <exon e_start="71292" e_stop="71223"/>
          <exon e_start="71127" e_stop="71067"/>
          <exon e_start="70971" e_stop="70913"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGAGAGAGAAAGAGACGAAGAAGAGAGAGAAAGCATGACGACGATTCGTAGATTCAGCTGCAATGACTTGCTTCGCTTCGCGTCAGTGAATTTGGATCATCTTACTGAAACTGTAAGCCAATTGACCCTCTCTTTTTCCCCTAAATTTAGTTTTTTGTTTGTTTGTAAATGATTAACGAAAACTGTATAGTTAGTAGTTTTTTTCTGAATTAGAAACGAGTTTTAAGATGATTCTGAATGCCTGTTTGAAATTTGAAAGGAGTTTTAACATGATCTGTAGTAGTGTTTTGTGAATTTTGGATGAATTTTAGCATGATTTTTAGTGCCTTTTATGTTATAATTAAAGATGAGTTTTAATATCTGCTGCAGTTCAACATGTCATTTTATATGACTTACATGGCAAGATGGC-CG-GATTATTTCCATGTT-GCAAAAGCTCCCGGCGGCCACAT-CATGGGATACAGTGAGTTATTCCAGTGTAGATTTTAAAGTTCATCACTTTTTTGGGTGATATAGCAGACGACTGATGATTATTTAATTTATATACAGATTGAGTTAAGTAAATTAGAAATATCAAATATAAGCTTGAAGGTAGGACTAAATGGTGGTAGATAGGAGCCAATTAAGTAGAAAGAGTCTAGAGTCCTTTAAGAATACAGAAAATCTGAAGATTAAGCAAAAATTGCAAGAATTGAAAATAATATGCCTAAAGCTCTCCCCTAACTCTTACCTTCTTTTTCAAGAGCAAATTCTTTTCTAAAGGTGGATGGAGGAAATGGGATTTTCTCGAGGAATATTCTTCAGCAGCACTGTTTGATGCAGGGTATACATTAACTTTGACTTTATAGCTTCTTTTTTTTTTTTGTCATATAGTTGGCAAAAAATTGATTGAATTTAGATCAAACAATAGGTTGTAGAAAGGAATGGCAAGGATAAGCATTCTGAATTTCATTTCTCTTTCAAGAATTGGGGATGGAAAGTAGATTTCATGGGCTGGTGTAGGCGGATTTCACTAATTCTATTCCCCTAGATGCTAACACTATGTTTCTGAAAATTTCCAGCAACAGATCCTAGGTCCAAGGCAGATGCAAGTAATCATTCTCTTATACTCCCTTCCGTGAAGAGGTTTCATTTACTCGTTGTTGGTTTTCTTTTAAAAAGGAAAATGTCGGACTTTATTGGTGACAAAGTGGTTAGAATGTAAATTATGTACTTAGTTTGGCACCGGCTGGTGTATTCTGGCCTCTTCATGGGCGACAAAGTGGTTAGAATGTCAATTATGTAGTTGTCTTATTATGGTTACTGTCTGGTGCATTTTGGTATGTTATCAATGTTTTGAAAAATTACTCCTAAGAAAACATTTGTTTTTTTAAAAACTAATGTCTGGCTCATGTGTACAGTTATGGGAAAAGTTGAAGGGCAAGGTGAATCTTGGCATGGTCACGTTACTGCAGTAACTGTGGCTCCTGAATATCGGAGGCAGCAATTAGCCAAGAAATTGATGTACCTGCTGGAAGAAGTCAGTGATAAGATGTAAGAACCTATACAGTGTAAAAACTGTGGCTCATGAACTCTGGTTGCATTATTGGAATTCATCTTTCCAAATTTATCATTTTGTTGTTTCACCGTTCTTTTTATGTATAGGCTTGCAGATTACCACAGAGTTGTATTTAATTTTCACCTGGCATGAGCAGTTTGTTTACAGTTTTCCCACTTGTTTGTTTTAATCTAGCTTGTGGTTTGTTTCACTAGACCTCCTAAAATCATGTTACAGACATTTCTACTCTGGTTTACTTCCTTGTATGTTATTGTAGCTTACAGAAATTGTGTAGTTACATTGTGAATTCTGCTCATAGAAGCTTAACTGATTTAATGAATGCATAGTAACACCATATACTTGTACAAGTACTGCAAATTTTGGGTCGTAAATCTATGCACGTCCTTTGCCTTTTTTAGGGAATAAATACATCATTTTAGCCTTCTAGGTGCTTTTATTCAGACCTTGGTACAGTGGATACTGGAACCTCCTTTCTTTTCCAGTTTGGTGGATACTGAAAGTGGTATCCTACTTCCCTTAGTCTTGTTATTCCAGGCATAGTTATGCTGAGTAAGTTTTAAGTTTTTTTTTTTTTTAAAAAAAGTTTATATTATGAAGTTACGAGGTTCAAAAAAAAAGTTATGTAAGTTCGTGTGATGGCATAAAAGTTGAGTGTGAAGTGATACAATTAGATCAGTTTCATCATAGCAGAAATTAACCTTGTGGAGCTCAGCTTTGTTTTCTTTCTCTTTAATATTTTTGCTACTTGGCTTCACCAGTCTTTGCATGATAACATGAAGTATAATATGATGGAGTGTAGAGTGAGATCAGTAACCTTCTCTTCTTTTGAACTTCCTAGAGTTTAGTTCTGAACTTTGTTCTATTTAAACTATAACGGGCTTAATTTGATCAAATCACTCATTTTGTGTGATGGTATAAAGTTAGTGTCAGGCTAGAACAATGACATTTTTTGTAAACTTTGCCGATGTTTGTGGCTACTAGATCTTTATAATTGTGTGATATGCTGTCCAAGCTTGGCACTAAGGTGGACTTTATTCTTGTAGCGATAAGGCTTACTTTGTGGACTTGTTTGTGAGAGCATCAAACACACCAGCTATAAAGATGTACGAGAAGGTAGTAACCTTTCCTGAGATTACTCTTGTTGTAGTTGTATCTGGATGGATATGTATTCTTGGTATTAATCCTGTTAACTGTTTCATCTTTTCCAGCTTGATTACGTAGTATATAGGCGAGTTTTACGCTATTACTCAGGGGAGGAAGATGGTTTGGGTAAGTTGCTGCATCTTACTGTGATATAGTTTCCATTTGCATTTTGCTCCTATGATGTCACTGTTATGACCATTGTTTCCTGTTTGGTGTTTCAGATATGAGAAAGGCACTATCGCGAGATGTAGAAAAGAAGTCTATCATCCCTCTTAAACGA</genome_strand>
        <mrna_strand>TATAGAGAGAAAGAGACGAAGAAGAGAGAGAAAG-GTGACGACTATTCGTAAATTCAGCTGCAATGACTTGCTTCGCTTCACGTCAGTGAATTTGGATCATCTTACTGAAACT.................................................................................................................................................................................................................................................................TTCAACATGACATTTTATATGACTTACATGGAAAGATGGCGCGAGATTATTTCCATGTTCGCAAAAGCTCCCGGCGGCCACATACAAGGGATACA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATGGGAAAAGTTGAGGGGCAAGGTGAATCTTGGCATGGACACGTTACTGCAGTAACTGTGGCTCCTGAATATCGGACGCAGCTATTAGTCAAGAAATTGATGTACCAGCTGGAAGAAGTCAGTGATAAAAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATAAGGCTTACTTTGTGGACTTGTTTGTGAGAGCATCAAACACACCAGCTATAAAGATGTACGATAAG...............................................................................................CTTGATTACGTAGCATATAGGCGAGTTTTACGCTATTACTCATGGGAGGAAGATGGTTTGG...............................................................................................ATATGAGAAAGGCACTATCGCGAGATGTAGAATAGAAGACTATCATCCCTCTTAAACGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E295016" ref_strand="+" ref_description="SGN-E295016 [cLET-40-A13]">
      <seq>ggatcccccgggctgcaagcgacgattcgtagattcagctgcaatgacttgcttcgcttcgcgtcagtgaatttggatcatcttactgaaactttcaacatgtcattttatatgacttacatggcaagatggccggattatttccatgttgcaaaagctcccggcggccacatcatgggatacattatgggaaaagttgaagggcacggtgaatcttggcatggtcacgttactgcagttactgtggctcctgaatatcggaggcagcaattagccaagaaattgatgtacctgctggaagaagtcagtgataagatcgataaggcttactttgtggacttgtttgtgagagcatcaaacacaccagctataaagatgtacgagaagcttgattacgtagtatataggcgagttttacgctattactcaagggaggaagatggtttggatatgagaaaggcactatcgcgagatgtagaaaagaagtctatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0132E21.2" temp_strand="-" temp_description="C06SLm0132E21.2  AC211087.2 htgs_phase:3 submitted_to_sgn_as:C06SLm0132E21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="74158" stop="70627"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73851" g_stop="73779" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="93" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73778" i_stop="73522" i_length="257">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.757" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73521" g_stop="73431" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="184" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73430" i_stop="72494" i_length="937">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72493" g_stop="72361" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="317" r_length="133" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="72360" i_stop="71293" i_length="1068">
            <donor d_prob="0.765" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71292" g_stop="71223" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="387" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="71222" i_stop="71128" i_length="95">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="71127" g_stop="71067" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="448" r_length="61" r_score="0.984"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="71066" i_stop="70972" i_length="95">
            <donor d_prob="0.963" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="70971" g_stop="70927" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="449" r_stop="493" r_length="45" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0132E21.2" gen_strand="-" ref_id="SGN-E295016" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>473</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0132E21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E295016" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73851" e_stop="73779"/>
          <exon e_start="73521" e_stop="73431"/>
          <exon e_start="72493" e_stop="72361"/>
          <exon e_start="71292" e_stop="71223"/>
          <exon e_start="71127" e_stop="71067"/>
          <exon e_start="70971" e_stop="70927"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACGATTCGTAGATTCAGCTGCAATGACTTGCTTCGCTTCGCGTCAGTGAATTTGGATCATCTTACTGAAACTGTAAGCCAATTGACCCTCTCTTTTTCCCCTAAATTTAGTTTTTTGTTTGTTTGTAAATGATTAACGAAAACTGTATAGTTAGTAGTTTTTTTCTGAATTAGAAACGAGTTTTAAGATGATTCTGAATGCCTGTTTGAAATTTGAAAGGAGTTTTAACATGATCTGTAGTAGTGTTTTGTGAATTTTGGATGAATTTTAGCATGATTTTTAGTGCCTTTTATGTTATAATTAAAGATGAGTTTTAATATCTGCTGCAGTTCAACATGTCATTTTATATGACTTACATGGCAAGATGGCCGGATTATTTCCATGTTGCAAAAGCTCCCGGCGGCCACATCATGGGATACAGTGAGTTATTCCAGTGTAGATTTTAAAGTTCATCACTTTTTTGGGTGATATAGCAGACGACTGATGATTATTTAATTTATATACAGATTGAGTTAAGTAAATTAGAAATATCAAATATAAGCTTGAAGGTAGGACTAAATGGTGGTAGATAGGAGCCAATTAAGTAGAAAGAGTCTAGAGTCCTTTAAGAATACAGAAAATCTGAAGATTAAGCAAAAATTGCAAGAATTGAAAATAATATGCCTAAAGCTCTCCCCTAACTCTTACCTTCTTTTTCAAGAGCAAATTCTTTTCTAAAGGTGGATGGAGGAAATGGGATTTTCTCGAGGAATATTCTTCAGCAGCACTGTTTGATGCAGGGTATACATTAACTTTGACTTTATAGCTTCTTTTTTTTTTTTGTCATATAGTTGGCAAAAAATTGATTGAATTTAGATCAAACAATAGGTTGTAGAAAGGAATGGCAAGGATAAGCATTCTGAATTTCATTTCTCTTTCAAGAATTGGGGATGGAAAGTAGATTTCATGGGCTGGTGTAGGCGGATTTCACTAATTCTATTCCCCTAGATGCTAACACTATGTTTCTGAAAATTTCCAGCAACAGATCCTAGGTCCAAGGCAGATGCAAGTAATCATTCTCTTATACTCCCTTCCGTGAAGAGGTTTCATTTACTCGTTGTTGGTTTTCTTTTAAAAAGGAAAATGTCGGACTTTATTGGTGACAAAGTGGTTAGAATGTAAATTATGTACTTAGTTTGGCACCGGCTGGTGTATTCTGGCCTCTTCATGGGCGACAAAGTGGTTAGAATGTCAATTATGTAGTTGTCTTATTATGGTTACTGTCTGGTGCATTTTGGTATGTTATCAATGTTTTGAAAAATTACTCCTAAGAAAACATTTGTTTTTTTAAAAACTAATGTCTGGCTCATGTGTACAGTTATGGGAAAAGTTGAAGGGCAAGGTGAATCTTGGCATGGTCACGTTACTGCAGTAACTGTGGCTCCTGAATATCGGAGGCAGCAATTAGCCAAGAAATTGATGTACCTGCTGGAAGAAGTCAGTGATAAGATGTAAGAACCTATACAGTGTAAAAACTGTGGCTCATGAACTCTGGTTGCATTATTGGAATTCATCTTTCCAAATTTATCATTTTGTTGTTTCACCGTTCTTTTTATGTATAGGCTTGCAGATTACCACAGAGTTGTATTTAATTTTCACCTGGCATGAGCAGTTTGTTTACAGTTTTCCCACTTGTTTGTTTTAATCTAGCTTGTGGTTTGTTTCACTAGACCTCCTAAAATCATGTTACAGACATTTCTACTCTGGTTTACTTCCTTGTATGTTATTGTAGCTTACAGAAATTGTGTAGTTACATTGTGAATTCTGCTCATAGAAGCTTAACTGATTTAATGAATGCATAGTAACACCATATACTTGTACAAGTACTGCAAATTTTGGGTCGTAAATCTATGCACGTCCTTTGCCTTTTTTAGGGAATAAATACATCATTTTAGCCTTCTAGGTGCTTTTATTCAGACCTTGGTACAGTGGATACTGGAACCTCCTTTCTTTTCCAGTTTGGTGGATACTGAAAGTGGTATCCTACTTCCCTTAGTCTTGTTATTCCAGGCATAGTTATGCTGAGTAAGTTTTAAGTTTTTTTTTTTTTTAAAAAAAGTTTATATTATGAAGTTACGAGGTTCAAAAAAAAAGTTATGTAAGTTCGTGTGATGGCATAAAAGTTGAGTGTGAAGTGATACAATTAGATCAGTTTCATCATAGCAGAAATTAACCTTGTGGAGCTCAGCTTTGTTTTCTTTCTCTTTAATATTTTTGCTACTTGGCTTCACCAGTCTTTGCATGATAACATGAAGTATAATATGATGGAGTGTAGAGTGAGATCAGTAACCTTCTCTTCTTTTGAACTTCCTAGAGTTTAGTTCTGAACTTTGTTCTATTTAAACTATAACGGGCTTAATTTGATCAAATCACTCATTTTGTGTGATGGTATAAAGTTAGTGTCAGGCTAGAACAATGACATTTTTTGTAAACTTTGCCGATGTTTGTGGCTACTAGATCTTTATAATTGTGTGATATGCTGTCCAAGCTTGGCACTAAGGTGGACTTTATTCTTGTAGCGATAAGGCTTACTTTGTGGACTTGTTTGTGAGAGCATCAAACACACCAGCTATAAAGATGTACGAGAAGGTAGTAACCTTTCCTGAGATTACTCTTGTTGTAGTTGTATCTGGATGGATATGTATTCTTGGTATTAATCCTGTTAACTGTTTCATCTTTTCCAGCTTGATTACGTAGTATATAGGCGAGTTTTACGCTATTACTCAGGGGAGGAAGATGGTTTGGGTAAGTTGCTGCATCTTACTGTGATATAGTTTCCATTTGCATTTTGCTCCTATGATGTCACTGTTATGACCATTGTTTCCTGTTTGGTGTTTCAGATATGAGAAAGGCACTATCGCGAGATGTAGAAAAGAAGTCTATCA</genome_strand>
        <mrna_strand>GACGATTCGTAGATTCAGCTGCAATGACTTGCTTCGCTTCGCGTCAGTGAATTTGGATCATCTTACTGAAACT.................................................................................................................................................................................................................................................................TTCAACATGTCATTTTATATGACTTACATGGCAAGATGGCCGGATTATTTCCATGTTGCAAAAGCTCCCGGCGGCCACATCATGGGATACA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATGGGAAAAGTTGAAGGGCACGGTGAATCTTGGCATGGTCACGTTACTGCAGTTACTGTGGCTCCTGAATATCGGAGGCAGCAATTAGCCAAGAAATTGATGTACCTGCTGGAAGAAGTCAGTGATAAGAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATAAGGCTTACTTTGTGGACTTGTTTGTGAGAGCATCAAACACACCAGCTATAAAGATGTACGAGAAG...............................................................................................CTTGATTACGTAGTATATAGGCGAGTTTTACGCTATTACTCAAGGGAGGAAGATGGTTTGG...............................................................................................ATATGAGAAAGGCACTATCGCGAGATGTAGAAAAGAAGTCTATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E308779" ref_strand="+" ref_description="SGN-E308779 [cLEZ-14-B13]">
      <seq>ccagaagagttccgtagagagagaaagagacgaagaagagagagaaagcatgacgacgattcgtagattcagctgcaatgacttgcttcgcttcgcgtcagtgaatttggatcatcttactgaaactttcaacatgtcattttatatgacttacatggcaagatggccggattatttccatgttgcaaaagctcccggcggccacatcatgggatacattatgggaaaagttgaagggcaaggtgaatcttggcatggtcacgttactgcagtaactgtggctcctgaatatcggaggcagcaattagccaagaaattgatgtacctgctggaagaagtcagtgataagatcgataaggcttactttgtggacttgtttgtgagagcatcaaacacaccagctataaagatgtacgagaagcttgattacgtagtatataggcgagttttacgctattactcaggggaggaagatggtttggatatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0132E21.2" temp_strand="-" temp_description="C06SLm0132E21.2  AC211087.2 htgs_phase:3 submitted_to_sgn_as:C06SLm0132E21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="74205" stop="70762"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73905" g_stop="73779" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="127" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73778" i_stop="73522" i_length="257">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.757" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73521" g_stop="73431" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="218" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73430" i_stop="72494" i_length="937">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72493" g_stop="72361" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="351" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="72360" i_stop="71293" i_length="1068">
            <donor d_prob="0.765" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71292" g_stop="71223" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="421" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="71222" i_stop="71128" i_length="95">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="71127" g_stop="71067" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="482" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="71066" i_stop="70972" i_length="95">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="70971" g_stop="70966" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="483" r_stop="488" r_length="6" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0132E21.2" gen_strand="-" ref_id="SGN-E308779" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>488</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0132E21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E308779" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73905" e_stop="73779"/>
          <exon e_start="73521" e_stop="73431"/>
          <exon e_start="72493" e_stop="72361"/>
          <exon e_start="71292" e_stop="71223"/>
          <exon e_start="71127" e_stop="71067"/>
          <exon e_start="70971" e_stop="70966"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAGAAGAGTTCCGTAGAGAGAGAAAGAGACGAAGAAGAGAGAGAAAGCATGACGACGATTCGTAGATTCAGCTGCAATGACTTGCTTCGCTTCGCGTCAGTGAATTTGGATCATCTTACTGAAACTGTAAGCCAATTGACCCTCTCTTTTTCCCCTAAATTTAGTTTTTTGTTTGTTTGTAAATGATTAACGAAAACTGTATAGTTAGTAGTTTTTTTCTGAATTAGAAACGAGTTTTAAGATGATTCTGAATGCCTGTTTGAAATTTGAAAGGAGTTTTAACATGATCTGTAGTAGTGTTTTGTGAATTTTGGATGAATTTTAGCATGATTTTTAGTGCCTTTTATGTTATAATTAAAGATGAGTTTTAATATCTGCTGCAGTTCAACATGTCATTTTATATGACTTACATGGCAAGATGGCCGGATTATTTCCATGTTGCAAAAGCTCCCGGCGGCCACATCATGGGATACAGTGAGTTATTCCAGTGTAGATTTTAAAGTTCATCACTTTTTTGGGTGATATAGCAGACGACTGATGATTATTTAATTTATATACAGATTGAGTTAAGTAAATTAGAAATATCAAATATAAGCTTGAAGGTAGGACTAAATGGTGGTAGATAGGAGCCAATTAAGTAGAAAGAGTCTAGAGTCCTTTAAGAATACAGAAAATCTGAAGATTAAGCAAAAATTGCAAGAATTGAAAATAATATGCCTAAAGCTCTCCCCTAACTCTTACCTTCTTTTTCAAGAGCAAATTCTTTTCTAAAGGTGGATGGAGGAAATGGGATTTTCTCGAGGAATATTCTTCAGCAGCACTGTTTGATGCAGGGTATACATTAACTTTGACTTTATAGCTTCTTTTTTTTTTTTGTCATATAGTTGGCAAAAAATTGATTGAATTTAGATCAAACAATAGGTTGTAGAAAGGAATGGCAAGGATAAGCATTCTGAATTTCATTTCTCTTTCAAGAATTGGGGATGGAAAGTAGATTTCATGGGCTGGTGTAGGCGGATTTCACTAATTCTATTCCCCTAGATGCTAACACTATGTTTCTGAAAATTTCCAGCAACAGATCCTAGGTCCAAGGCAGATGCAAGTAATCATTCTCTTATACTCCCTTCCGTGAAGAGGTTTCATTTACTCGTTGTTGGTTTTCTTTTAAAAAGGAAAATGTCGGACTTTATTGGTGACAAAGTGGTTAGAATGTAAATTATGTACTTAGTTTGGCACCGGCTGGTGTATTCTGGCCTCTTCATGGGCGACAAAGTGGTTAGAATGTCAATTATGTAGTTGTCTTATTATGGTTACTGTCTGGTGCATTTTGGTATGTTATCAATGTTTTGAAAAATTACTCCTAAGAAAACATTTGTTTTTTTAAAAACTAATGTCTGGCTCATGTGTACAGTTATGGGAAAAGTTGAAGGGCAAGGTGAATCTTGGCATGGTCACGTTACTGCAGTAACTGTGGCTCCTGAATATCGGAGGCAGCAATTAGCCAAGAAATTGATGTACCTGCTGGAAGAAGTCAGTGATAAGATGTAAGAACCTATACAGTGTAAAAACTGTGGCTCATGAACTCTGGTTGCATTATTGGAATTCATCTTTCCAAATTTATCATTTTGTTGTTTCACCGTTCTTTTTATGTATAGGCTTGCAGATTACCACAGAGTTGTATTTAATTTTCACCTGGCATGAGCAGTTTGTTTACAGTTTTCCCACTTGTTTGTTTTAATCTAGCTTGTGGTTTGTTTCACTAGACCTCCTAAAATCATGTTACAGACATTTCTACTCTGGTTTACTTCCTTGTATGTTATTGTAGCTTACAGAAATTGTGTAGTTACATTGTGAATTCTGCTCATAGAAGCTTAACTGATTTAATGAATGCATAGTAACACCATATACTTGTACAAGTACTGCAAATTTTGGGTCGTAAATCTATGCACGTCCTTTGCCTTTTTTAGGGAATAAATACATCATTTTAGCCTTCTAGGTGCTTTTATTCAGACCTTGGTACAGTGGATACTGGAACCTCCTTTCTTTTCCAGTTTGGTGGATACTGAAAGTGGTATCCTACTTCCCTTAGTCTTGTTATTCCAGGCATAGTTATGCTGAGTAAGTTTTAAGTTTTTTTTTTTTTTAAAAAAAGTTTATATTATGAAGTTACGAGGTTCAAAAAAAAAGTTATGTAAGTTCGTGTGATGGCATAAAAGTTGAGTGTGAAGTGATACAATTAGATCAGTTTCATCATAGCAGAAATTAACCTTGTGGAGCTCAGCTTTGTTTTCTTTCTCTTTAATATTTTTGCTACTTGGCTTCACCAGTCTTTGCATGATAACATGAAGTATAATATGATGGAGTGTAGAGTGAGATCAGTAACCTTCTCTTCTTTTGAACTTCCTAGAGTTTAGTTCTGAACTTTGTTCTATTTAAACTATAACGGGCTTAATTTGATCAAATCACTCATTTTGTGTGATGGTATAAAGTTAGTGTCAGGCTAGAACAATGACATTTTTTGTAAACTTTGCCGATGTTTGTGGCTACTAGATCTTTATAATTGTGTGATATGCTGTCCAAGCTTGGCACTAAGGTGGACTTTATTCTTGTAGCGATAAGGCTTACTTTGTGGACTTGTTTGTGAGAGCATCAAACACACCAGCTATAAAGATGTACGAGAAGGTAGTAACCTTTCCTGAGATTACTCTTGTTGTAGTTGTATCTGGATGGATATGTATTCTTGGTATTAATCCTGTTAACTGTTTCATCTTTTCCAGCTTGATTACGTAGTATATAGGCGAGTTTTACGCTATTACTCAGGGGAGGAAGATGGTTTGGGTAAGTTGCTGCATCTTACTGTGATATAGTTTCCATTTGCATTTTGCTCCTATGATGTCACTGTTATGACCATTGTTTCCTGTTTGGTGTTTCAGATATGA</genome_strand>
        <mrna_strand>CCAGAAGAGTTCCGTAGAGAGAGAAAGAGACGAAGAAGAGAGAGAAAGCATGACGACGATTCGTAGATTCAGCTGCAATGACTTGCTTCGCTTCGCGTCAGTGAATTTGGATCATCTTACTGAAACT.................................................................................................................................................................................................................................................................TTCAACATGTCATTTTATATGACTTACATGGCAAGATGGCCGGATTATTTCCATGTTGCAAAAGCTCCCGGCGGCCACATCATGGGATACA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATGGGAAAAGTTGAAGGGCAAGGTGAATCTTGGCATGGTCACGTTACTGCAGTAACTGTGGCTCCTGAATATCGGAGGCAGCAATTAGCCAAGAAATTGATGTACCTGCTGGAAGAAGTCAGTGATAAGAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATAAGGCTTACTTTGTGGACTTGTTTGTGAGAGCATCAAACACACCAGCTATAAAGATGTACGAGAAG...............................................................................................CTTGATTACGTAGTATATAGGCGAGTTTTACGCTATTACTCAGGGGAGGAAGATGGTTTGG...............................................................................................ATATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E292676" ref_strand="+" ref_description="SGN-E292676 [cLET-11-I22]">
      <seq>agagaaagagacgaagaagagagagaaagcatgacgacgattcgtagattcagctgcaatgacttgcttcgcttcgcgtcagtgaatttggatcatcttactgaaactttcaacatgtcattttatatgacttacatggcaagatggccggattatttccatgttgcaaaagctcccggcggccacatcatgggatacattatgggaaaagttgaagggcaaggtgaatcttggcatggtcacgttactgcagtaactgtggctcctgaatatcggaggcagcaattagccaagaaattgatgtacctgctggaagaagtcagtgataagatcgataaggcttactttgtggacttgtttgtgagagcatcaaacacaccagctataaagatgtacgagaagcttgattacgtagtatataggcgagttttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0132E21.2" temp_strand="-" temp_description="C06SLm0132E21.2  AC211087.2 htgs_phase:3 submitted_to_sgn_as:C06SLm0132E21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="74186" stop="70797"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73886" g_stop="73779" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="108" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73778" i_stop="73522" i_length="257">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.757" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73521" g_stop="73431" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="199" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73430" i_stop="72494" i_length="937">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72493" g_stop="72361" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="332" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="72360" i_stop="71293" i_length="1068">
            <donor d_prob="0.765" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71292" g_stop="71223" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="402" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="71222" i_stop="71128" i_length="95">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="71127" g_stop="71097" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="433" r_length="31" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0132E21.2" gen_strand="-" ref_id="SGN-E292676" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0132E21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E292676" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73886" e_stop="73779"/>
          <exon e_start="73521" e_stop="73431"/>
          <exon e_start="72493" e_stop="72361"/>
          <exon e_start="71292" e_stop="71223"/>
          <exon e_start="71127" e_stop="71097"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGAAAGAGACGAAGAAGAGAGAGAAAGCATGACGACGATTCGTAGATTCAGCTGCAATGACTTGCTTCGCTTCGCGTCAGTGAATTTGGATCATCTTACTGAAACTGTAAGCCAATTGACCCTCTCTTTTTCCCCTAAATTTAGTTTTTTGTTTGTTTGTAAATGATTAACGAAAACTGTATAGTTAGTAGTTTTTTTCTGAATTAGAAACGAGTTTTAAGATGATTCTGAATGCCTGTTTGAAATTTGAAAGGAGTTTTAACATGATCTGTAGTAGTGTTTTGTGAATTTTGGATGAATTTTAGCATGATTTTTAGTGCCTTTTATGTTATAATTAAAGATGAGTTTTAATATCTGCTGCAGTTCAACATGTCATTTTATATGACTTACATGGCAAGATGGCCGGATTATTTCCATGTTGCAAAAGCTCCCGGCGGCCACATCATGGGATACAGTGAGTTATTCCAGTGTAGATTTTAAAGTTCATCACTTTTTTGGGTGATATAGCAGACGACTGATGATTATTTAATTTATATACAGATTGAGTTAAGTAAATTAGAAATATCAAATATAAGCTTGAAGGTAGGACTAAATGGTGGTAGATAGGAGCCAATTAAGTAGAAAGAGTCTAGAGTCCTTTAAGAATACAGAAAATCTGAAGATTAAGCAAAAATTGCAAGAATTGAAAATAATATGCCTAAAGCTCTCCCCTAACTCTTACCTTCTTTTTCAAGAGCAAATTCTTTTCTAAAGGTGGATGGAGGAAATGGGATTTTCTCGAGGAATATTCTTCAGCAGCACTGTTTGATGCAGGGTATACATTAACTTTGACTTTATAGCTTCTTTTTTTTTTTTGTCATATAGTTGGCAAAAAATTGATTGAATTTAGATCAAACAATAGGTTGTAGAAAGGAATGGCAAGGATAAGCATTCTGAATTTCATTTCTCTTTCAAGAATTGGGGATGGAAAGTAGATTTCATGGGCTGGTGTAGGCGGATTTCACTAATTCTATTCCCCTAGATGCTAACACTATGTTTCTGAAAATTTCCAGCAACAGATCCTAGGTCCAAGGCAGATGCAAGTAATCATTCTCTTATACTCCCTTCCGTGAAGAGGTTTCATTTACTCGTTGTTGGTTTTCTTTTAAAAAGGAAAATGTCGGACTTTATTGGTGACAAAGTGGTTAGAATGTAAATTATGTACTTAGTTTGGCACCGGCTGGTGTATTCTGGCCTCTTCATGGGCGACAAAGTGGTTAGAATGTCAATTATGTAGTTGTCTTATTATGGTTACTGTCTGGTGCATTTTGGTATGTTATCAATGTTTTGAAAAATTACTCCTAAGAAAACATTTGTTTTTTTAAAAACTAATGTCTGGCTCATGTGTACAGTTATGGGAAAAGTTGAAGGGCAAGGTGAATCTTGGCATGGTCACGTTACTGCAGTAACTGTGGCTCCTGAATATCGGAGGCAGCAATTAGCCAAGAAATTGATGTACCTGCTGGAAGAAGTCAGTGATAAGATGTAAGAACCTATACAGTGTAAAAACTGTGGCTCATGAACTCTGGTTGCATTATTGGAATTCATCTTTCCAAATTTATCATTTTGTTGTTTCACCGTTCTTTTTATGTATAGGCTTGCAGATTACCACAGAGTTGTATTTAATTTTCACCTGGCATGAGCAGTTTGTTTACAGTTTTCCCACTTGTTTGTTTTAATCTAGCTTGTGGTTTGTTTCACTAGACCTCCTAAAATCATGTTACAGACATTTCTACTCTGGTTTACTTCCTTGTATGTTATTGTAGCTTACAGAAATTGTGTAGTTACATTGTGAATTCTGCTCATAGAAGCTTAACTGATTTAATGAATGCATAGTAACACCATATACTTGTACAAGTACTGCAAATTTTGGGTCGTAAATCTATGCACGTCCTTTGCCTTTTTTAGGGAATAAATACATCATTTTAGCCTTCTAGGTGCTTTTATTCAGACCTTGGTACAGTGGATACTGGAACCTCCTTTCTTTTCCAGTTTGGTGGATACTGAAAGTGGTATCCTACTTCCCTTAGTCTTGTTATTCCAGGCATAGTTATGCTGAGTAAGTTTTAAGTTTTTTTTTTTTTTAAAAAAAGTTTATATTATGAAGTTACGAGGTTCAAAAAAAAAGTTATGTAAGTTCGTGTGATGGCATAAAAGTTGAGTGTGAAGTGATACAATTAGATCAGTTTCATCATAGCAGAAATTAACCTTGTGGAGCTCAGCTTTGTTTTCTTTCTCTTTAATATTTTTGCTACTTGGCTTCACCAGTCTTTGCATGATAACATGAAGTATAATATGATGGAGTGTAGAGTGAGATCAGTAACCTTCTCTTCTTTTGAACTTCCTAGAGTTTAGTTCTGAACTTTGTTCTATTTAAACTATAACGGGCTTAATTTGATCAAATCACTCATTTTGTGTGATGGTATAAAGTTAGTGTCAGGCTAGAACAATGACATTTTTTGTAAACTTTGCCGATGTTTGTGGCTACTAGATCTTTATAATTGTGTGATATGCTGTCCAAGCTTGGCACTAAGGTGGACTTTATTCTTGTAGCGATAAGGCTTACTTTGTGGACTTGTTTGTGAGAGCATCAAACACACCAGCTATAAAGATGTACGAGAAGGTAGTAACCTTTCCTGAGATTACTCTTGTTGTAGTTGTATCTGGATGGATATGTATTCTTGGTATTAATCCTGTTAACTGTTTCATCTTTTCCAGCTTGATTACGTAGTATATAGGCGAGTTTTAC</genome_strand>
        <mrna_strand>AGAGAAAGAGACGAAGAAGAGAGAGAAAGCATGACGACGATTCGTAGATTCAGCTGCAATGACTTGCTTCGCTTCGCGTCAGTGAATTTGGATCATCTTACTGAAACT.................................................................................................................................................................................................................................................................TTCAACATGTCATTTTATATGACTTACATGGCAAGATGGCCGGATTATTTCCATGTTGCAAAAGCTCCCGGCGGCCACATCATGGGATACA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATGGGAAAAGTTGAAGGGCAAGGTGAATCTTGGCATGGTCACGTTACTGCAGTAACTGTGGCTCCTGAATATCGGAGGCAGCAATTAGCCAAGAAATTGATGTACCTGCTGGAAGAAGTCAGTGATAAGAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATAAGGCTTACTTTGTGGACTTGTTTGTGAGAGCATCAAACACACCAGCTATAAAGATGTACGAGAAG...............................................................................................CTTGATTACGTAGTATATAGGCGAGTTTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E341808" ref_strand="+" ref_description="SGN-E341808 [cTOF-9-K14]">
      <seq>ggccgggtgtatgctattttgggccgtcactgctcacaaaggggcatcggtggtccattaactggttatcgcccttacagattaccagaagagttccgtagagagagaaagagacgaagaatagagagaaagcatgacgacgattcgtagattcagctgcaatgacttgcttcgcttcgcgtcagtgaatttggatcatcttactgaaactttcaacatgtcattttatatgacttacatggcaagatggccggattatttccatgttgcaaaagctcccggcggccacatcatgggatacattatgggaaaagttgaagggcaaggtgaatcttggcatggtcacgttactgcagtaactgtggctcctgaatatcggaggcagcaattagccaagaaattgatgtacctgctggaagaagtcagtgataagatcgataaggcttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0132E21.2" temp_strand="-" temp_description="C06SLm0132E21.2  AC211087.2 htgs_phase:3 submitted_to_sgn_as:C06SLm0132E21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="74288" stop="72056"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73988" g_stop="73779" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="211" r_length="211" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73778" i_stop="73522" i_length="257">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.757" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73521" g_stop="73431" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="302" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73430" i_stop="72494" i_length="937">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72493" g_stop="72361" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="435" r_length="133" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0132E21.2" gen_strand="-" ref_id="SGN-E341808" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>434</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0132E21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E341808" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73988" e_stop="73779"/>
          <exon e_start="73521" e_stop="73431"/>
          <exon e_start="72493" e_stop="72361"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCCGGGTGTATGCTATTTTGGGCCGTCA-TGCTCACAAAGGGGCATCGGTGGTCCATTAACTGGTTATCGCCCTTACAGATTACCAGAAGAGTTCCGTAGAGAGAGAAAGAGACGAAGAAGAGAGAGAAAGCATGACGACGATTCGTAGATTCAGCTGCAATGACTTGCTTCGCTTCGCGTCAGTGAATTTGGATCATCTTACTGAAACTGTAAGCCAATTGACCCTCTCTTTTTCCCCTAAATTTAGTTTTTTGTTTGTTTGTAAATGATTAACGAAAACTGTATAGTTAGTAGTTTTTTTCTGAATTAGAAACGAGTTTTAAGATGATTCTGAATGCCTGTTTGAAATTTGAAAGGAGTTTTAACATGATCTGTAGTAGTGTTTTGTGAATTTTGGATGAATTTTAGCATGATTTTTAGTGCCTTTTATGTTATAATTAAAGATGAGTTTTAATATCTGCTGCAGTTCAACATGTCATTTTATATGACTTACATGGCAAGATGGCCGGATTATTTCCATGTTGCAAAAGCTCCCGGCGGCCACATCATGGGATACAGTGAGTTATTCCAGTGTAGATTTTAAAGTTCATCACTTTTTTGGGTGATATAGCAGACGACTGATGATTATTTAATTTATATACAGATTGAGTTAAGTAAATTAGAAATATCAAATATAAGCTTGAAGGTAGGACTAAATGGTGGTAGATAGGAGCCAATTAAGTAGAAAGAGTCTAGAGTCCTTTAAGAATACAGAAAATCTGAAGATTAAGCAAAAATTGCAAGAATTGAAAATAATATGCCTAAAGCTCTCCCCTAACTCTTACCTTCTTTTTCAAGAGCAAATTCTTTTCTAAAGGTGGATGGAGGAAATGGGATTTTCTCGAGGAATATTCTTCAGCAGCACTGTTTGATGCAGGGTATACATTAACTTTGACTTTATAGCTTCTTTTTTTTTTTTGTCATATAGTTGGCAAAAAATTGATTGAATTTAGATCAAACAATAGGTTGTAGAAAGGAATGGCAAGGATAAGCATTCTGAATTTCATTTCTCTTTCAAGAATTGGGGATGGAAAGTAGATTTCATGGGCTGGTGTAGGCGGATTTCACTAATTCTATTCCCCTAGATGCTAACACTATGTTTCTGAAAATTTCCAGCAACAGATCCTAGGTCCAAGGCAGATGCAAGTAATCATTCTCTTATACTCCCTTCCGTGAAGAGGTTTCATTTACTCGTTGTTGGTTTTCTTTTAAAAAGGAAAATGTCGGACTTTATTGGTGACAAAGTGGTTAGAATGTAAATTATGTACTTAGTTTGGCACCGGCTGGTGTATTCTGGCCTCTTCATGGGCGACAAAGTGGTTAGAATGTCAATTATGTAGTTGTCTTATTATGGTTACTGTCTGGTGCATTTTGGTATGTTATCAATGTTTTGAAAAATTACTCCTAAGAAAACATTTGTTTTTTTAAAAACTAATGTCTGGCTCATGTGTACAGTTATGGGAAAAGTTGAAGGGCAAGGTGAATCTTGGCATGGTCACGTTACTGCAGTAACTGTGGCTCCTGAATATCGGAGGCAGCAATTAGCCAAGAAATTGATGTACCTGCTGGAAGAAGTCAGTGATAAGAT</genome_strand>
        <mrna_strand>GGCCGGGTGTATGCTATTTTGGGCCGTCACTGCTCACAAAGGGGCATCGGTGGTCCATTAACTGGTTATCGCCCTTACAGATTACCAGAAGAGTTCCGTAGAGAGAGAAAGAGACGAAGAATAGAGAGAAAGCATGACGACGATTCGTAGATTCAGCTGCAATGACTTGCTTCGCTTCGCGTCAGTGAATTTGGATCATCTTACTGAAACT.................................................................................................................................................................................................................................................................TTCAACATGTCATTTTATATGACTTACATGGCAAGATGGCCGGATTATTTCCATGTTGCAAAAGCTCCCGGCGGCCACATCATGGGATACA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATGGGAAAAGTTGAAGGGCAAGGTGAATCTTGGCATGGTCACGTTACTGCAGTAACTGTGGCTCCTGAATATCGGAGGCAGCAATTAGCCAAGAAATTGATGTACCTGCTGGAAGAAGTCAGTGATAAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E290201" ref_strand="+" ref_description="SGN-E290201 [cLET-5-C8]">
      <seq>agattaccagaagagttccgtatagagagaaagagacgaagaagagagagaaagcatgacgacgattcgtagattcagctgcaatgacttgcttcgcttcgcgtcagtgaatttggatcatcttactgaaactttcaacatgtcattttatatgacttacatggcaagatggccggattatttccatgttgcaaaagctcccggcggccacatcatgggatacattatgggaaaagttgaagggcaaggtgaatcttggcatggtcacgttactgcagtaactgtggctcctgaatatcggaggcagcaattagccaagaaattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0132E21.2" temp_strand="-" temp_description="C06SLm0132E21.2  AC211087.2 htgs_phase:3 submitted_to_sgn_as:C06SLm0132E21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="74211" stop="72093"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73911" g_stop="73779" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="133" r_length="133" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73778" i_stop="73522" i_length="257">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.757" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73521" g_stop="73431" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="224" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73430" i_stop="72494" i_length="937">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72493" g_stop="72393" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="325" r_length="101" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0132E21.2" gen_strand="-" ref_id="SGN-E290201" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>325</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0132E21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E290201" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73911" e_stop="73779"/>
          <exon e_start="73521" e_stop="73431"/>
          <exon e_start="72493" e_stop="72393"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATTACCAGAAGAGTTCCGTAGAGAGAGAAAGAGACGAAGAAGAGAGAGAAAGCATGACGACGATTCGTAGATTCAGCTGCAATGACTTGCTTCGCTTCGCGTCAGTGAATTTGGATCATCTTACTGAAACTGTAAGCCAATTGACCCTCTCTTTTTCCCCTAAATTTAGTTTTTTGTTTGTTTGTAAATGATTAACGAAAACTGTATAGTTAGTAGTTTTTTTCTGAATTAGAAACGAGTTTTAAGATGATTCTGAATGCCTGTTTGAAATTTGAAAGGAGTTTTAACATGATCTGTAGTAGTGTTTTGTGAATTTTGGATGAATTTTAGCATGATTTTTAGTGCCTTTTATGTTATAATTAAAGATGAGTTTTAATATCTGCTGCAGTTCAACATGTCATTTTATATGACTTACATGGCAAGATGGCCGGATTATTTCCATGTTGCAAAAGCTCCCGGCGGCCACATCATGGGATACAGTGAGTTATTCCAGTGTAGATTTTAAAGTTCATCACTTTTTTGGGTGATATAGCAGACGACTGATGATTATTTAATTTATATACAGATTGAGTTAAGTAAATTAGAAATATCAAATATAAGCTTGAAGGTAGGACTAAATGGTGGTAGATAGGAGCCAATTAAGTAGAAAGAGTCTAGAGTCCTTTAAGAATACAGAAAATCTGAAGATTAAGCAAAAATTGCAAGAATTGAAAATAATATGCCTAAAGCTCTCCCCTAACTCTTACCTTCTTTTTCAAGAGCAAATTCTTTTCTAAAGGTGGATGGAGGAAATGGGATTTTCTCGAGGAATATTCTTCAGCAGCACTGTTTGATGCAGGGTATACATTAACTTTGACTTTATAGCTTCTTTTTTTTTTTTGTCATATAGTTGGCAAAAAATTGATTGAATTTAGATCAAACAATAGGTTGTAGAAAGGAATGGCAAGGATAAGCATTCTGAATTTCATTTCTCTTTCAAGAATTGGGGATGGAAAGTAGATTTCATGGGCTGGTGTAGGCGGATTTCACTAATTCTATTCCCCTAGATGCTAACACTATGTTTCTGAAAATTTCCAGCAACAGATCCTAGGTCCAAGGCAGATGCAAGTAATCATTCTCTTATACTCCCTTCCGTGAAGAGGTTTCATTTACTCGTTGTTGGTTTTCTTTTAAAAAGGAAAATGTCGGACTTTATTGGTGACAAAGTGGTTAGAATGTAAATTATGTACTTAGTTTGGCACCGGCTGGTGTATTCTGGCCTCTTCATGGGCGACAAAGTGGTTAGAATGTCAATTATGTAGTTGTCTTATTATGGTTACTGTCTGGTGCATTTTGGTATGTTATCAATGTTTTGAAAAATTACTCCTAAGAAAACATTTGTTTTTTTAAAAACTAATGTCTGGCTCATGTGTACAGTTATGGGAAAAGTTGAAGGGCAAGGTGAATCTTGGCATGGTCACGTTACTGCAGTAACTGTGGCTCCTGAATATCGGAGGCAGCAATTAGCCAAGAAATTG</genome_strand>
        <mrna_strand>AGATTACCAGAAGAGTTCCGTATAGAGAGAAAGAGACGAAGAAGAGAGAGAAAGCATGACGACGATTCGTAGATTCAGCTGCAATGACTTGCTTCGCTTCGCGTCAGTGAATTTGGATCATCTTACTGAAACT.................................................................................................................................................................................................................................................................TTCAACATGTCATTTTATATGACTTACATGGCAAGATGGCCGGATTATTTCCATGTTGCAAAAGCTCCCGGCGGCCACATCATGGGATACA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATGGGAAAAGTTGAAGGGCAAGGTGAATCTTGGCATGGTCACGTTACTGCAGTAACTGTGGCTCCTGAATATCGGAGGCAGCAATTAGCCAAGAAATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E290094" ref_strand="+" ref_description="SGN-E290094 [cLET-5-F19]">
      <seq>agagaaagagacgaagaagagagagaaagcatgacgacgattcgtagattcagctgcaatgacttgcttcgcttcgcgtcagtgaatttggatcatcttactgaaactttcaacatgtcattttatatgacttacatggcaagatggccggattatttccatgttgcaaaagctcccggcggccacatcatgggatacattatgggaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0132E21.2" temp_strand="-" temp_description="C06SLm0132E21.2  AC211087.2 htgs_phase:3 submitted_to_sgn_as:C06SLm0132E21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="74186" stop="73129"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73886" g_stop="73779" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="108" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73778" i_stop="73522" i_length="257">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.757" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73521" g_stop="73431" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="199" r_length="91" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0132E21.2" gen_strand="-" ref_id="SGN-E290094" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>199</cumulative_length_of_scored_exons>
        <coverage percentage="0.948" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0132E21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E290094" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73886" e_stop="73779"/>
          <exon e_start="73521" e_stop="73431"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGAAAGAGACGAAGAAGAGAGAGAAAGCATGACGACGATTCGTAGATTCAGCTGCAATGACTTGCTTCGCTTCGCGTCAGTGAATTTGGATCATCTTACTGAAACTGTAAGCCAATTGACCCTCTCTTTTTCCCCTAAATTTAGTTTTTTGTTTGTTTGTAAATGATTAACGAAAACTGTATAGTTAGTAGTTTTTTTCTGAATTAGAAACGAGTTTTAAGATGATTCTGAATGCCTGTTTGAAATTTGAAAGGAGTTTTAACATGATCTGTAGTAGTGTTTTGTGAATTTTGGATGAATTTTAGCATGATTTTTAGTGCCTTTTATGTTATAATTAAAGATGAGTTTTAATATCTGCTGCAGTTCAACATGTCATTTTATATGACTTACATGGCAAGATGGCCGGATTATTTCCATGTTGCAAAAGCTCCCGGCGGCCACATCATGGGATACA</genome_strand>
        <mrna_strand>AGAGAAAGAGACGAAGAAGAGAGAGAAAGCATGACGACGATTCGTAGATTCAGCTGCAATGACTTGCTTCGCTTCGCGTCAGTGAATTTGGATCATCTTACTGAAACT.................................................................................................................................................................................................................................................................TTCAACATGTCATTTTATATGACTTACATGGCAAGATGGCCGGATTATTTCCATGTTGCAAAAGCTCCCGGCGGCCACATCATGGGATACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E325770" ref_strand="+" ref_description="SGN-E325770 [cTOC-12-A11]">
      <seq>aagagacgaagaagagagagaaagcatgacgacgattcgtagattcagctgccatgacttgcttcgcttcgcgtcagtgaatttggatcatcttactgaaactttcaacatgtcattttatatgacttacatggcaagatggccggattatttccatgttgcaaaagctccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0132E21.2" temp_strand="-" temp_description="C06SLm0132E21.2  AC211087.2 htgs_phase:3 submitted_to_sgn_as:C06SLm0132E21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="74181" stop="73153"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73881" g_stop="73779" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="103" r_length="103" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73778" i_stop="73522" i_length="257">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.757" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73521" g_stop="73453" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="172" r_length="69" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0132E21.2" gen_strand="-" ref_id="SGN-E325770" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>172</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0132E21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E325770" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73881" e_stop="73779"/>
          <exon e_start="73521" e_stop="73453"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGACGAAGAAGAGAGAGAAAGCATGACGACGATTCGTAGATTCAGCTGCAATGACTTGCTTCGCTTCGCGTCAGTGAATTTGGATCATCTTACTGAAACTGTAAGCCAATTGACCCTCTCTTTTTCCCCTAAATTTAGTTTTTTGTTTGTTTGTAAATGATTAACGAAAACTGTATAGTTAGTAGTTTTTTTCTGAATTAGAAACGAGTTTTAAGATGATTCTGAATGCCTGTTTGAAATTTGAAAGGAGTTTTAACATGATCTGTAGTAGTGTTTTGTGAATTTTGGATGAATTTTAGCATGATTTTTAGTGCCTTTTATGTTATAATTAAAGATGAGTTTTAATATCTGCTGCAGTTCAACATGTCATTTTATATGACTTACATGGCAAGATGGCCGGATTATTTCCATGTTGCAAAAGCTCCC</genome_strand>
        <mrna_strand>AAGAGACGAAGAAGAGAGAGAAAGCATGACGACGATTCGTAGATTCAGCTGCCATGACTTGCTTCGCTTCGCGTCAGTGAATTTGGATCATCTTACTGAAACT.................................................................................................................................................................................................................................................................TTCAACATGTCATTTTATATGACTTACATGGCAAGATGGCCGGATTATTTCCATGTTGCAAAAGCTCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E295202" ref_strand="+" ref_description="SGN-E295202 [cLET-20-F12]">
      <seq>gcgatctcgccggcgctccggccatcattatcgtcggaaaatcttccattcttctcatttctctctctatctaagagtactcaggaggattgaaggtttaaggtgaccatggaagaaactggactgagaaatgtgggctccaactgctccatttctgaaatagatgattatgatctctctaagcttctaaacaagccaaggctaaacatagagaggaagagatcttttgatgagaggtcactcagtgagttgtccattggcctatctagaggtttagatcattatgaaagtgcctcacctggccaatcagtcttggacaccccagttgcatcagcccggaactcttttgagccccatccgatggttgctgaagcatgggatgctctacgccgcactatggttcattttcgtggtcaaccagtcggtacaatagcggcaattgaccatgcctctgaagaagtcctcaactatgatcaggtttttgttcgagattttgtgcctagtgctttggccttcctgatgaatggagagccagatatagtcaagaacttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0132E21.2" temp_strand="+" temp_description="C06SLm0132E21.2  AC211087.2 htgs_phase:3 submitted_to_sgn_as:C06SLm0132E21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="85789" stop="88724"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86089" g_stop="86163" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86164" i_stop="87665" i_length="1502">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87666" g_stop="88067" g_length="402"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="477" r_length="402" r_score="0.998"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88068" i_stop="88349" i_length="282">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88350" g_stop="88424" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="478" r_stop="552" r_length="75" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0132E21.2" gen_strand="+" ref_id="SGN-E295202" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>552</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0132E21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E295202" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86089" e_stop="86163"/>
          <exon e_start="87666" e_stop="88067"/>
          <exon e_start="88350" e_stop="88424"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGATCTCGCCGGCGCTCCGGCCATCATCATCGTCGGAAAATCTTCCATTCTTCTCATTTCTCTCTCTATCTAAGGTAGTCTCTCTTTCTCTCTCTTATACATATTTCTCTGCATATTTATCTTCTTCCTCTAAAAGCTTGTATTTTCTGCGTGTGTATTGTTGATTTTGTGCAAAATCAGCTCTAGATCTAATTTGCTTCTCAGAAAGCTCTTTTACTATGTGTTTAATTTATTTACATTATGTTATCTTCTTCATTATATTTGGATCTTAAGTTTGTAATATGCAGCTTGTTCTCTGAATTGGGATATGGAGATTTGATCTTTTGTATGAGCTTCCTTTGTAGAATCCAATGTTTTTGTTCTTTCTAAAATTAACATCATTCTATAGGAAAAGAAATCTGAACAGCTTGATTTATGGTAATAGTGGCAGTTCAATGTGTGTACTTCTTTTCTTTCTGGATAAGGTTATTTTGATTATGGGAATGGAATTACTAGTGACCTGCATTATTGCTTATTGGATACTGTAGTCTTTTTGGATAAGATTGAATAGTGAAATCCTTATTATTCTTACTTTGTTTCTCCCTTTGTATAATGGTTGGGAACTTGGATGATGGCTATTGTTTACCGACTCGCTTTTTGCTTTCAGTTGAGCCATAATGTTACAGAGATTCGTGTTCTGTACAATTTTCGTCCCGGGTTTTGATACTAAGTGATTTTCTGGACTTCCTGACCATCTATTTATGTGTGTGTACATATGTGCACCTAAATATTCCAACTTTATGTACATAAAAGCACCTTTTCCTTTTTATGCGAGATAATATTTGTGGGTTGAGAATTATCAAGTAATATAGATCGATATCAAGTTTGTGTTTTTATATCGGTCTGCAACTTGGATTGTAGTATAAAGGGGCTAATGCTTATGATTTCTAGTTATATGTGATTTTCTGAAGTTCCGTATATGTCTTTTGACATACTTGAGCGAATGTGCACACACATGTATGTATGTTTGCGTCTATGTATCTATTTGTGTGCCCTTAAATTACTTCTGAGTATTGAAAAAGTGGGTCCGGATGAACTGGAATGGATTCATATAGCCGATCTAACTAATTTGCCATTGGGCATAGTTAAGTGATTGATACAAATGCATGCTCACAAACACCAGTATTGTGTGTGTAAAGTTCCTTCTTTCAGTGCGACCCAGAGTGCTAGTGGGTTGACAGGTAGCTAATCCATCCCTTTCAATTTGTTTGTCTTACTTACCTTTTTAATCTGTTTTTTTTTTAAAAAATCCCTTTTTCCGTTTTCCGCAACTCCTTAGTTCTAACTTCCCACACAACATGTTTGAGACCACAAGATTAAAAGTCATTTTTGTACAATCTATATATATCTTTAATTTAAGATTACAAGATTCGAAAGTCTTCTTTACTTTCTTAAACTCAGGGCCTAGTCAATACTAGACAAAACAAATTGAACCGAAGGGTGCATTATTTTCCTAAGAAGAAATAACAATTTTGTATTTCTATATGGAGCTGCAACCTGTATTTTGTTCTTAAAGGTGTTATTGTTTATGATACAGAGTACTCAGGAGGATTGAAGGTTTAAGGTGACCATGGAAGAAACTGGACTGAGAAATGTGGGCTCCAACTGCTCCATTTCTGAAATAGATGATTATGATCTCTCTAAGCTTCTAAACAAGCCAAGGCTAAACATAGAGAGGAAGAGATCTTTTGATGAGAGGTCACTCAGTGAGTTGTCCATTGGCCTATCTAGAGGTTTAGATCATTATGAAAGTGCCTCACCTGGCCAATCAGTCTTGGACACCCCAGTTTCATCAGCCCGGAACTCTTTTGAGCCCCATCCGATGGTTGCTGAAGCATGGGATGCTCTACGCCGCACTATGGTTCATTTTCGTGGTCAACCAGTCGGTACAATAGCGGCAATTGACCATGCCTCTGAAGAAGTCCTCAACTATGATCAGGTCAGTAATATGAAATCCAAGTATTACAGAATCTTGGTCCTCTTTATGATTTTGATTTAGTAATTTGCATAATATTGGTATCATATACTATGATCAGGTATGAATTTTTTGAACAAAAATGTGCGTTGATTATTGATGCCATACATATTAATGTTGGGATATTGTCATATTGATGCCGAAACTGGGTTTAGTTTGGAGTGAGGTACAGTGATGTGATAAGGAGTATAATAATATCTGTTTTATCAGATTATTTATCTAGTGAAGATTTCGTTTGGTGTGTAGGTTTTTGTTCGAGATTTTGTGCCTAGTGCTTTGGCCTTCCTGATGAATGGAGAGCCAGATATAGTCAAGAACTTC</genome_strand>
        <mrna_strand>GCGATCTCGCCGGCGCTCCGGCCATCATTATCGTCGGAAAATCTTCCATTCTTCTCATTTCTCTCTCTATCTAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTACTCAGGAGGATTGAAGGTTTAAGGTGACCATGGAAGAAACTGGACTGAGAAATGTGGGCTCCAACTGCTCCATTTCTGAAATAGATGATTATGATCTCTCTAAGCTTCTAAACAAGCCAAGGCTAAACATAGAGAGGAAGAGATCTTTTGATGAGAGGTCACTCAGTGAGTTGTCCATTGGCCTATCTAGAGGTTTAGATCATTATGAAAGTGCCTCACCTGGCCAATCAGTCTTGGACACCCCAGTTGCATCAGCCCGGAACTCTTTTGAGCCCCATCCGATGGTTGCTGAAGCATGGGATGCTCTACGCCGCACTATGGTTCATTTTCGTGGTCAACCAGTCGGTACAATAGCGGCAATTGACCATGCCTCTGAAGAAGTCCTCAACTATGATCAG..........................................................................................................................................................................................................................................................................................GTTTTTGTTCGAGATTTTGTGCCTAGTGCTTTGGCCTTCCTGATGAATGGAGAGCCAGATATAGTCAAGAACTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E329919" ref_strand="+" ref_description="SGN-E329919 [cTOD-5-K3]">
      <seq>gcgctccggccatcatcatcgtcttaaaatcttccattcttctcatttggctctctgtctaagagtactcaggaggattgaaggtttaaggtgaccatggaagaaactggactgagaaatgtgggctccaactgctccatttctgaaatagatgattatgatctctctaagcttctaaacaagccaaggctaaacatagagaggaagagatcttttgatgagaggtcactcagtgagttgtccattggcctatctagaggtttagatcattatgaaagtgcctcacctggccaatcagtcttggacaccccagtttcatcagcccggaactcttttgagccccatccgatggttgctgaagcatgggatgctctacaccgcactatggttcattttcgaggtcaaccagaccgtacaatagcggcaattgaccatgcctctgaagaagtcctcaactatgatcacgtttttgttcgagattttgtgcctagagctttggccttcctgatgaatggagagccagatata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0132E21.2" temp_strand="+" temp_description="C06SLm0132E21.2  AC211087.2 htgs_phase:3 submitted_to_sgn_as:C06SLm0132E21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="85801" stop="88712"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86101" g_stop="86163" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="0.921"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86164" i_stop="87665" i_length="1502">
            <donor d_prob="1.000" d_score="0.90"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87666" g_stop="88067" g_length="402"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="465" r_length="402" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88068" i_stop="88349" i_length="282">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88350" g_stop="88412" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="466" r_stop="528" r_length="63" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0132E21.2" gen_strand="+" ref_id="SGN-E329919" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>528</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0132E21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E329919" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86101" e_stop="86163"/>
          <exon e_start="87666" e_stop="88067"/>
          <exon e_start="88350" e_stop="88412"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGCTCCGGCCATCATCATCGTCGGAAAATCTTCCATTCTTCTCATTTCTCTCTCTATCTAAGGTAGTCTCTCTTTCTCTCTCTTATACATATTTCTCTGCATATTTATCTTCTTCCTCTAAAAGCTTGTATTTTCTGCGTGTGTATTGTTGATTTTGTGCAAAATCAGCTCTAGATCTAATTTGCTTCTCAGAAAGCTCTTTTACTATGTGTTTAATTTATTTACATTATGTTATCTTCTTCATTATATTTGGATCTTAAGTTTGTAATATGCAGCTTGTTCTCTGAATTGGGATATGGAGATTTGATCTTTTGTATGAGCTTCCTTTGTAGAATCCAATGTTTTTGTTCTTTCTAAAATTAACATCATTCTATAGGAAAAGAAATCTGAACAGCTTGATTTATGGTAATAGTGGCAGTTCAATGTGTGTACTTCTTTTCTTTCTGGATAAGGTTATTTTGATTATGGGAATGGAATTACTAGTGACCTGCATTATTGCTTATTGGATACTGTAGTCTTTTTGGATAAGATTGAATAGTGAAATCCTTATTATTCTTACTTTGTTTCTCCCTTTGTATAATGGTTGGGAACTTGGATGATGGCTATTGTTTACCGACTCGCTTTTTGCTTTCAGTTGAGCCATAATGTTACAGAGATTCGTGTTCTGTACAATTTTCGTCCCGGGTTTTGATACTAAGTGATTTTCTGGACTTCCTGACCATCTATTTATGTGTGTGTACATATGTGCACCTAAATATTCCAACTTTATGTACATAAAAGCACCTTTTCCTTTTTATGCGAGATAATATTTGTGGGTTGAGAATTATCAAGTAATATAGATCGATATCAAGTTTGTGTTTTTATATCGGTCTGCAACTTGGATTGTAGTATAAAGGGGCTAATGCTTATGATTTCTAGTTATATGTGATTTTCTGAAGTTCCGTATATGTCTTTTGACATACTTGAGCGAATGTGCACACACATGTATGTATGTTTGCGTCTATGTATCTATTTGTGTGCCCTTAAATTACTTCTGAGTATTGAAAAAGTGGGTCCGGATGAACTGGAATGGATTCATATAGCCGATCTAACTAATTTGCCATTGGGCATAGTTAAGTGATTGATACAAATGCATGCTCACAAACACCAGTATTGTGTGTGTAAAGTTCCTTCTTTCAGTGCGACCCAGAGTGCTAGTGGGTTGACAGGTAGCTAATCCATCCCTTTCAATTTGTTTGTCTTACTTACCTTTTTAATCTGTTTTTTTTTTAAAAAATCCCTTTTTCCGTTTTCCGCAACTCCTTAGTTCTAACTTCCCACACAACATGTTTGAGACCACAAGATTAAAAGTCATTTTTGTACAATCTATATATATCTTTAATTTAAGATTACAAGATTCGAAAGTCTTCTTTACTTTCTTAAACTCAGGGCCTAGTCAATACTAGACAAAACAAATTGAACCGAAGGGTGCATTATTTTCCTAAGAAGAAATAACAATTTTGTATTTCTATATGGAGCTGCAACCTGTATTTTGTTCTTAAAGGTGTTATTGTTTATGATACAGAGTACTCAGGAGGATTGAAGGTTTAAGGTGACCATGGAAGAAACTGGACTGAGAAATGTGGGCTCCAACTGCTCCATTTCTGAAATAGATGATTATGATCTCTCTAAGCTTCTAAACAAGCCAAGGCTAAACATAGAGAGGAAGAGATCTTTTGATGAGAGGTCACTCAGTGAGTTGTCCATTGGCCTATCTAGAGGTTTAGATCATTATGAAAGTGCCTCACCTGGCCAATCAGTCTTGGACACCCCAGTTTCATCAGCCCGGAACTCTTTTGAGCCCCATCCGATGGTTGCTGAAGCATGGGATGCTCTACGCCGCACTATGGTTCATTTTCGTGGTCAACCAGTCGGTACAATAGCGGCAATTGACCATGCCTCTGAAGAAGTCCTCAACTATGATCAGGTCAGTAATATGAAATCCAAGTATTACAGAATCTTGGTCCTCTTTATGATTTTGATTTAGTAATTTGCATAATATTGGTATCATATACTATGATCAGGTATGAATTTTTTGAACAAAAATGTGCGTTGATTATTGATGCCATACATATTAATGTTGGGATATTGTCATATTGATGCCGAAACTGGGTTTAGTTTGGAGTGAGGTACAGTGATGTGATAAGGAGTATAATAATATCTGTTTTATCAGATTATTTATCTAGTGAAGATTTCGTTTGGTGTGTAGGTTTTTGTTCGAGATTTTGTGCCTAGTGCTTTGGCCTTCCTGATGAATGGAGAGCCAGATATA</genome_strand>
        <mrna_strand>GCGCTCCGGCCATCATCATCGTCTTAAAATCTTCCATTCTTCTCATTTGGCTCTCTGTCTAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTACTCAGGAGGATTGAAGGTTTAAGGTGACCATGGAAGAAACTGGACTGAGAAATGTGGGCTCCAACTGCTCCATTTCTGAAATAGATGATTATGATCTCTCTAAGCTTCTAAACAAGCCAAGGCTAAACATAGAGAGGAAGAGATCTTTTGATGAGAGGTCACTCAGTGAGTTGTCCATTGGCCTATCTAGAGGTTTAGATCATTATGAAAGTGCCTCACCTGGCCAATCAGTCTTGGACACCCCAGTTTCATCAGCCCGGAACTCTTTTGAGCCCCATCCGATGGTTGCTGAAGCATGGGATGCTCTACACCGCACTATGGTTCATTTTCGAGGTCAACCAGACCGTACAATAGCGGCAATTGACCATGCCTCTGAAGAAGTCCTCAACTATGATCAC..........................................................................................................................................................................................................................................................................................GTTTTTGTTCGAGATTTTGTGCCTAGAGCTTTGGCCTTCCTGATGAATGGAGAGCCAGATATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E263372" ref_strand="+" ref_description="SGN-E263372 [cLEG-62-L7]">
      <seq>acatttccaactctgctatgtgctgatggatgctcaatgattgataggaggatgggtgtttatggatatcctattgagatccaagctctcttcttcatggcactgagatctgcattggccatgttgaagcacgatacagaagggaaagaattcattgagagaatagtgaagcgcctgcatgccttgagttatcatatgcgaagttatttttggctcgactttcaacagttaaatgacatatatcgctataaaactgaagagtattctcacacagcagtaaataagtttaatgttattcctgattcaatcccagagtgggtatttgattttgtgcctacacgtggaggttactttattggaaacgttagtcctgcaaggatggacttcaggtggtttgctttgggtaactgtattgcaatcttgtcttcccttgccactccagaacaagcttctgctattatggatctcatagaatcccgctgggaggagctagtagcagatatgcctttgaagatatgctatccagcaattgaaaatcacgaatggcggatagtaactggttgtgatcccaagaatattagatggagttaccataatggaggatcttggccagtgcttttgtggttgctaacggctgcctgcattaagactggacggccacaaattgcaagacgagcaattgatcttgctgagagccgcttactcaaggacagctggcctgaatattatgatggaaagctcggcagatacattggta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0132E21.2" temp_strand="+" temp_description="C06SLm0132E21.2  AC211087.2 htgs_phase:3 submitted_to_sgn_as:C06SLm0132E21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="88428" stop="91631"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88728" g_stop="88781" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88782" i_stop="90405" i_length="1624">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90406" g_stop="90964" g_length="559"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="613" r_length="559" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="90965" i_stop="91187" i_length="223">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.843" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91188" g_stop="91331" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="614" r_stop="757" r_length="144" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0132E21.2" gen_strand="+" ref_id="SGN-E263372" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>757</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0132E21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E263372" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88728" e_stop="88781"/>
          <exon e_start="90406" e_stop="90964"/>
          <exon e_start="91188" e_stop="91331"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATTTCCAACTCTGCTATGTGCTGATGGATGCTCAATGATTGATAGGAGGATGGTAATACATTTTGTCATCATACCTTCTCAATATATTTGGATCTCTTCTTATCATTGTGATATAAAGCCTGTTTAGCGTAGATGATTGGAGCAATTTATAAGCAACAAGAGCTGAAGCTGGTTTTATAAATAAGGAGTTAGTTTCTTTCAATTTTTGTGATTAGGATTCATTTAGATGTGTATTCTTATGTTCTTCTATGCATTCTCATCTTATGTTTCATGGTTATACAAAACTTTTTAGTCGGAAAATGAACTTTTGCAATAGATTGTCTAGTGACCTTTAGCTTTGTTTTCTTTGTCCCTGTGACAATGTGACATGAGCTCTAATGCATAGTAAATGGATTTTAGACTCTAGTAGAATTCAGTGAATGTTTTTAGTGTAGATCTCTATTCTAAGTTGAAACTAGCACTTTGTACATCCCTCAGATCAGGCTAAATTTTGTGGGAGATTTGTCAACAAAACGTATAACACAGTAAAATTTTGAATCATTGGCTCCCTAAAAGATTGTTTGCATCATTAGCCTCTTCAAATGATGTTCTGTTAGAGTTCATGTAACCAACCACCTGAGCTATTAATATTCCCCGACAATTGTTGTTCAATTGTTCAGGATATTGATATTTTGGTCCATAACTTATGTTCAAGCGTTGGACATACACTCTTGATGTTTGAATTTAGAGCTTTTAACTAATCTACTAGTTTCTCAGACAAGTAACTTTTGTGAAAATTACAACCCATTCGTCTTTAGCAGTTACTGCTTTTTATTGACTTTGGAATAGTCAATCAGAACGGAATTAATGATAAAGCTGAAAGAAAATAGAGAATCAGAAAGGGAGGAATGAGATGATTTATTCTGTTTCAGTCCTAAAAGGCTGTCACGCAGCTCATATTCTTCTTTGTTGAAGGGGAAACAAACTCCTTGTCTTCCTCTCCCTTTTCTTCAACTTTTTGACTTTTTACATTTTCCTACTTCTTTGTATGGGCATAATGTGCGACCATATGATTTGAGCCAATTAATGGATTTCTTGGAATTGTTAGATAGAACAGTCTAGTAGTCTGTTTTTCTTTCTAAAGCTTTATGTTGTTTACGTAACCTTTTAGTACCTTGTTGGAACCCTTTTAATAAAACTTTTGCCTTATCAGAAAATTAAACATAACGCAGCTTATCTAGTGAAATTTTAGTGTTTTTTTTTTTAAGAATGAGAAACCATAACATGGCCTAATTGAACCGTTTCTGGTTATACCTCATGCGTTGAATTGCTACGTTTCATCATTTCTGAAGCTTCTCTTCCAGCTTAGTTATCCGTGACATACAAATTTCTTTAAAAATTTTAATTTTTCAAGTCAATGAATGTCTAGAGGTGAACCTTTTATTTATGGTACTCTATTGTTTTGTCTGATATCTGACAATGATCGGAAAACTCTAATAGTAAATGGATCTAATCTAAGAGACTGAAATTCTCGCCCTTGTGAGTTTCCTTAATCATTCTTAGAGGACTAGATTTTTATGCTTAAAAGAACAGTAACACAACTTTTTCTTGCCTCCAAAATTTAGGATCCATGATTGATGTTTTTTTCTTGAAAAGACATTAATTGGATACTAATTTTTATTGTGGTTGATTTTCAGGGTGTTTATGGATATCCTATTGAGATCCAAGCTCTCTTCTTCATGGCACTGAGATCTGCATTGGCCATGTTGAAGCACGATACAGAAGGGAAAGAATTCATTGAGAGAATAGTGAAGCGCCTGCATGCCTTGAGTTATCATATGCGAAGTTATTTTTGGCTCGACTTTCAACAGTTAAATGACATATATCGCTATAAAACTGAAGAGTATTCTCACACAGCAGTAAATAAGTTTAATGTTATTCCTGATTCAATCCCAGAGTGGGTATTTGATTTTGTGCCTACACGTGGAGGTTACTTTATTGGAAACGTTAGTCCTGCAAGGATGGACTTCAGGTGGTTTGCTTTGGGTAACTGTATTGCAATCTTGTCTTCCCTTGCCACTCCAGAACAAGCTTCTGCTATTATGGATCTCATAGAATCCCGCTGGGAGGAGCTAGTAGCAGATATGCCTTTGAAGATATGCTATCCAGCAATTGAAAATCACGAATGGCGGATAGTAACTGGTTGTGATCCCAAGAATATTAGATGGAGTTACCATAATGGAGGATCTTGGCCAGGTTCGACCATCATCCTTCTGCACTGCATTTTATTTGACTTTGATCATTGTTGGAAGTTATTTATTCAACCCTATACGATGTTATAAGGATTCTTTGCTTTGGAATTTTTTTGTTAGTTTTAGTTCTATTAGTGAAAGAAATGGAATGCTTAGTCTAATTTTGAAGTCAATTGATCTTACGCTTGCTAATGCTACTACACACATGATTCACCTCTTAAACACAGTGCTTTTGTGGTTGCTAACGGCTGCCTGCATTAAGACTGGACGGCCACAAATTGCAAGACGAGCAATTGATCTTGCTGAGAGCCGCTTACTCAAGGACAGCTGGCCTGAATATTATGATGGAAAGCTCGGCAGATACATTGGTA</genome_strand>
        <mrna_strand>ACATTTCCAACTCTGCTATGTGCTGATGGATGCTCAATGATTGATAGGAGGATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGTTTATGGATATCCTATTGAGATCCAAGCTCTCTTCTTCATGGCACTGAGATCTGCATTGGCCATGTTGAAGCACGATACAGAAGGGAAAGAATTCATTGAGAGAATAGTGAAGCGCCTGCATGCCTTGAGTTATCATATGCGAAGTTATTTTTGGCTCGACTTTCAACAGTTAAATGACATATATCGCTATAAAACTGAAGAGTATTCTCACACAGCAGTAAATAAGTTTAATGTTATTCCTGATTCAATCCCAGAGTGGGTATTTGATTTTGTGCCTACACGTGGAGGTTACTTTATTGGAAACGTTAGTCCTGCAAGGATGGACTTCAGGTGGTTTGCTTTGGGTAACTGTATTGCAATCTTGTCTTCCCTTGCCACTCCAGAACAAGCTTCTGCTATTATGGATCTCATAGAATCCCGCTGGGAGGAGCTAGTAGCAGATATGCCTTTGAAGATATGCTATCCAGCAATTGAAAATCACGAATGGCGGATAGTAACTGGTTGTGATCCCAAGAATATTAGATGGAGTTACCATAATGGAGGATCTTGGCCAG...............................................................................................................................................................................................................................TGCTTTTGTGGTTGCTAACGGCTGCCTGCATTAAGACTGGACGGCCACAAATTGCAAGACGAGCAATTGATCTTGCTGAGAGCCGCTTACTCAAGGACAGCTGGCCTGAATATTATGATGGAAAGCTCGGCAGATACATTGGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E254129" ref_strand="+" ref_description="SGN-E254129 [cLEG-34-I5]">
      <seq>acatttccaactctgctatgtgctgatggatgctcaatgattgataggaggatgggtgtttatggatatcctattgagatccaagctctcttcttcatggcactgagatctgcattggccatgttgaagcacgatacagaagggaaagaattcattgagagaatagtgaagcgcctgcatgccttgagttatcatatgcgaagttatttttggctcgactttcaacagttaaatgacatatatcgctataaaactgaagagtattctcacacagcagtaaataagtttaatgttattcctgattcaatcccagagtgggtatttgattttgtgcctacacgtggaggttactttattggaaacgttagtcctgcaaggatggacttcaggtggtttgctttgggtaactgtattgcaatcttgtcttcccttgccactccagaacaagcttctgctattatggatctcatagaatcccgctgggaggagctagtagcagatatgcctttgaagatatgctatccagcaattgaaaatcacgaatggcggatagtaactggttgtgatcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0132E21.2" temp_strand="+" temp_description="C06SLm0132E21.2  AC211087.2 htgs_phase:3 submitted_to_sgn_as:C06SLm0132E21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="88428" stop="91220"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88728" g_stop="88781" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88782" i_stop="90405" i_length="1624">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90406" g_stop="90920" g_length="515"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="569" r_length="515" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0132E21.2" gen_strand="+" ref_id="SGN-E254129" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>569</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0132E21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E254129" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88728" e_stop="88781"/>
          <exon e_start="90406" e_stop="90920"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATTTCCAACTCTGCTATGTGCTGATGGATGCTCAATGATTGATAGGAGGATGGTAATACATTTTGTCATCATACCTTCTCAATATATTTGGATCTCTTCTTATCATTGTGATATAAAGCCTGTTTAGCGTAGATGATTGGAGCAATTTATAAGCAACAAGAGCTGAAGCTGGTTTTATAAATAAGGAGTTAGTTTCTTTCAATTTTTGTGATTAGGATTCATTTAGATGTGTATTCTTATGTTCTTCTATGCATTCTCATCTTATGTTTCATGGTTATACAAAACTTTTTAGTCGGAAAATGAACTTTTGCAATAGATTGTCTAGTGACCTTTAGCTTTGTTTTCTTTGTCCCTGTGACAATGTGACATGAGCTCTAATGCATAGTAAATGGATTTTAGACTCTAGTAGAATTCAGTGAATGTTTTTAGTGTAGATCTCTATTCTAAGTTGAAACTAGCACTTTGTACATCCCTCAGATCAGGCTAAATTTTGTGGGAGATTTGTCAACAAAACGTATAACACAGTAAAATTTTGAATCATTGGCTCCCTAAAAGATTGTTTGCATCATTAGCCTCTTCAAATGATGTTCTGTTAGAGTTCATGTAACCAACCACCTGAGCTATTAATATTCCCCGACAATTGTTGTTCAATTGTTCAGGATATTGATATTTTGGTCCATAACTTATGTTCAAGCGTTGGACATACACTCTTGATGTTTGAATTTAGAGCTTTTAACTAATCTACTAGTTTCTCAGACAAGTAACTTTTGTGAAAATTACAACCCATTCGTCTTTAGCAGTTACTGCTTTTTATTGACTTTGGAATAGTCAATCAGAACGGAATTAATGATAAAGCTGAAAGAAAATAGAGAATCAGAAAGGGAGGAATGAGATGATTTATTCTGTTTCAGTCCTAAAAGGCTGTCACGCAGCTCATATTCTTCTTTGTTGAAGGGGAAACAAACTCCTTGTCTTCCTCTCCCTTTTCTTCAACTTTTTGACTTTTTACATTTTCCTACTTCTTTGTATGGGCATAATGTGCGACCATATGATTTGAGCCAATTAATGGATTTCTTGGAATTGTTAGATAGAACAGTCTAGTAGTCTGTTTTTCTTTCTAAAGCTTTATGTTGTTTACGTAACCTTTTAGTACCTTGTTGGAACCCTTTTAATAAAACTTTTGCCTTATCAGAAAATTAAACATAACGCAGCTTATCTAGTGAAATTTTAGTGTTTTTTTTTTTAAGAATGAGAAACCATAACATGGCCTAATTGAACCGTTTCTGGTTATACCTCATGCGTTGAATTGCTACGTTTCATCATTTCTGAAGCTTCTCTTCCAGCTTAGTTATCCGTGACATACAAATTTCTTTAAAAATTTTAATTTTTCAAGTCAATGAATGTCTAGAGGTGAACCTTTTATTTATGGTACTCTATTGTTTTGTCTGATATCTGACAATGATCGGAAAACTCTAATAGTAAATGGATCTAATCTAAGAGACTGAAATTCTCGCCCTTGTGAGTTTCCTTAATCATTCTTAGAGGACTAGATTTTTATGCTTAAAAGAACAGTAACACAACTTTTTCTTGCCTCCAAAATTTAGGATCCATGATTGATGTTTTTTTCTTGAAAAGACATTAATTGGATACTAATTTTTATTGTGGTTGATTTTCAGGGTGTTTATGGATATCCTATTGAGATCCAAGCTCTCTTCTTCATGGCACTGAGATCTGCATTGGCCATGTTGAAGCACGATACAGAAGGGAAAGAATTCATTGAGAGAATAGTGAAGCGCCTGCATGCCTTGAGTTATCATATGCGAAGTTATTTTTGGCTCGACTTTCAACAGTTAAATGACATATATCGCTATAAAACTGAAGAGTATTCTCACACAGCAGTAAATAAGTTTAATGTTATTCCTGATTCAATCCCAGAGTGGGTATTTGATTTTGTGCCTACACGTGGAGGTTACTTTATTGGAAACGTTAGTCCTGCAAGGATGGACTTCAGGTGGTTTGCTTTGGGTAACTGTATTGCAATCTTGTCTTCCCTTGCCACTCCAGAACAAGCTTCTGCTATTATGGATCTCATAGAATCCCGCTGGGAGGAGCTAGTAGCAGATATGCCTTTGAAGATATGCTATCCAGCAATTGAAAATCACGAATGGCGGATAGTAACTGGTTGTGATCC</genome_strand>
        <mrna_strand>ACATTTCCAACTCTGCTATGTGCTGATGGATGCTCAATGATTGATAGGAGGATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGTTTATGGATATCCTATTGAGATCCAAGCTCTCTTCTTCATGGCACTGAGATCTGCATTGGCCATGTTGAAGCACGATACAGAAGGGAAAGAATTCATTGAGAGAATAGTGAAGCGCCTGCATGCCTTGAGTTATCATATGCGAAGTTATTTTTGGCTCGACTTTCAACAGTTAAATGACATATATCGCTATAAAACTGAAGAGTATTCTCACACAGCAGTAAATAAGTTTAATGTTATTCCTGATTCAATCCCAGAGTGGGTATTTGATTTTGTGCCTACACGTGGAGGTTACTTTATTGGAAACGTTAGTCCTGCAAGGATGGACTTCAGGTGGTTTGCTTTGGGTAACTGTATTGCAATCTTGTCTTCCCTTGCCACTCCAGAACAAGCTTCTGCTATTATGGATCTCATAGAATCCCGCTGGGAGGAGCTAGTAGCAGATATGCCTTTGAAGATATGCTATCCAGCAATTGAAAATCACGAATGGCGGATAGTAACTGGTTGTGATCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E725594" ref_strand="+" ref_description="SGN-E725594 [LA04AF12]">
      <seq>ctcgactttcaacagttaaatgacatatatcgctataaaactgaagagtattctcacacagcagtaaataagtttaatgttattcctgattcaatcccagagtgggtatttgattttgtgcctacacgtggaggttactttattggaaacgttagtcctgcaaggatggacttcaggtggtttgctttgggtaactgtattgcaatcttgtcttcccttgccactccagaacaagcttctgctattatggatctcatagaatcccgctgggaggagctagtagcagatatgcctttgaagatatgctatccagcaattgaaaatcacgaatggcggatagtaactggttgtgatcccaagaatattagatggagttaccataatggaggatcttggccagtgcttttgtggttgctaacggctgcctgcattaagactggacggccacaaattggcagacgagcaattgatcttgctgagagccgcttactcaaggacagctggcctgaatatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0132E21.2" temp_strand="+" temp_description="C06SLm0132E21.2  AC211087.2 htgs_phase:3 submitted_to_sgn_as:C06SLm0132E21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="90265" stop="91602"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90565" g_stop="90964" g_length="400"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="400" r_length="400" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90965" i_stop="91187" i_length="223">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.843" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91188" g_stop="91302" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="515" r_length="115" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0132E21.2" gen_strand="+" ref_id="SGN-E725594" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>515</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0132E21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E725594" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90565" e_stop="90964"/>
          <exon e_start="91188" e_stop="91302"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCGACTTTCAACAGTTAAATGACATATATCGCTATAAAACTGAAGAGTATTCTCACACAGCAGTAAATAAGTTTAATGTTATTCCTGATTCAATCCCAGAGTGGGTATTTGATTTTGTGCCTACACGTGGAGGTTACTTTATTGGAAACGTTAGTCCTGCAAGGATGGACTTCAGGTGGTTTGCTTTGGGTAACTGTATTGCAATCTTGTCTTCCCTTGCCACTCCAGAACAAGCTTCTGCTATTATGGATCTCATAGAATCCCGCTGGGAGGAGCTAGTAGCAGATATGCCTTTGAAGATATGCTATCCAGCAATTGAAAATCACGAATGGCGGATAGTAACTGGTTGTGATCCCAAGAATATTAGATGGAGTTACCATAATGGAGGATCTTGGCCAGGTTCGACCATCATCCTTCTGCACTGCATTTTATTTGACTTTGATCATTGTTGGAAGTTATTTATTCAACCCTATACGATGTTATAAGGATTCTTTGCTTTGGAATTTTTTTGTTAGTTTTAGTTCTATTAGTGAAAGAAATGGAATGCTTAGTCTAATTTTGAAGTCAATTGATCTTACGCTTGCTAATGCTACTACACACATGATTCACCTCTTAAACACAGTGCTTTTGTGGTTGCTAACGGCTGCCTGCATTAAGACTGGACGGCCACAAATTGCAAGACGAGCAATTGATCTTGCTGAGAGCCGCTTACTCAAGGACAGCTGGCCTGAATATTA</genome_strand>
        <mrna_strand>CTCGACTTTCAACAGTTAAATGACATATATCGCTATAAAACTGAAGAGTATTCTCACACAGCAGTAAATAAGTTTAATGTTATTCCTGATTCAATCCCAGAGTGGGTATTTGATTTTGTGCCTACACGTGGAGGTTACTTTATTGGAAACGTTAGTCCTGCAAGGATGGACTTCAGGTGGTTTGCTTTGGGTAACTGTATTGCAATCTTGTCTTCCCTTGCCACTCCAGAACAAGCTTCTGCTATTATGGATCTCATAGAATCCCGCTGGGAGGAGCTAGTAGCAGATATGCCTTTGAAGATATGCTATCCAGCAATTGAAAATCACGAATGGCGGATAGTAACTGGTTGTGATCCCAAGAATATTAGATGGAGTTACCATAATGGAGGATCTTGGCCAG...............................................................................................................................................................................................................................TGCTTTTGTGGTTGCTAACGGCTGCCTGCATTAAGACTGGACGGCCACAAATTGGCAGACGAGCAATTGATCTTGCTGAGAGCCGCTTACTCAAGGACAGCTGGCCTGAATATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E345920" ref_strand="+" ref_description="SGN-E345920 [cTOF-24-J3]">
      <seq>tttaatgttattcctgattcaatcccagagtgggtatttgattttgtgcctacacgtggaggttactttattggaaacgttagtcctgcaaggatggacttcaggtggtttgctttgggtaactgtattgcaatcttgtcttcccttgccactccagaacaagcttctgctattatggatctcatagaatcccgctgggaggagctagtagcagatatgcctttgaagatatgctatccagcaattgaaaatcacgaatggcggatagtaactggttgtgatcccaagaatattagatggagttaccataatggaggatcttggccagtgcttttgtggttgctaacggctgcctgcattaagactggacggccacaaattgcaagacgagcaattgatcttgctgagagccgcttactcaaggacagctggcctgaatattatgatggaaagctcggcagatacattggtaaacaagcaaggaagcaccagacatggtcaattgctggatatcttgtagcaaagatgttgctggaggatccttcacacttgggaatgatctctttggaggaggacaagcaaatgaagcctgtaatcaagcgatcatcttca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0132E21.2" temp_strand="+" temp_description="C06SLm0132E21.2  AC211087.2 htgs_phase:3 submitted_to_sgn_as:C06SLm0132E21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="90337" stop="91771"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90637" g_stop="90964" g_length="328"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="328" r_length="328" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90965" i_stop="91187" i_length="223">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.843" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91188" g_stop="91471" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="612" r_length="284" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0132E21.2" gen_strand="+" ref_id="SGN-E345920" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>612</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0132E21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E345920" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90637" e_stop="90964"/>
          <exon e_start="91188" e_stop="91471"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAATGTTATTCCTGATTCAATCCCAGAGTGGGTATTTGATTTTGTGCCTACACGTGGAGGTTACTTTATTGGAAACGTTAGTCCTGCAAGGATGGACTTCAGGTGGTTTGCTTTGGGTAACTGTATTGCAATCTTGTCTTCCCTTGCCACTCCAGAACAAGCTTCTGCTATTATGGATCTCATAGAATCCCGCTGGGAGGAGCTAGTAGCAGATATGCCTTTGAAGATATGCTATCCAGCAATTGAAAATCACGAATGGCGGATAGTAACTGGTTGTGATCCCAAGAATATTAGATGGAGTTACCATAATGGAGGATCTTGGCCAGGTTCGACCATCATCCTTCTGCACTGCATTTTATTTGACTTTGATCATTGTTGGAAGTTATTTATTCAACCCTATACGATGTTATAAGGATTCTTTGCTTTGGAATTTTTTTGTTAGTTTTAGTTCTATTAGTGAAAGAAATGGAATGCTTAGTCTAATTTTGAAGTCAATTGATCTTACGCTTGCTAATGCTACTACACACATGATTCACCTCTTAAACACAGTGCTTTTGTGGTTGCTAACGGCTGCCTGCATTAAGACTGGACGGCCACAAATTGCAAGACGAGCAATTGATCTTGCTGAGAGCCGCTTACTCAAGGACAGCTGGCCTGAATATTATGATGGAAAGCTCGGCAGATACATTGGTAAACAAGCAAGGAAGCACCAGACATGGTCAATTGCTGGATATCTTGTAGCAAAGATGTTGCTGGAGGATCCTTCACACTTGGGAATGATCTCTTTGGAGGAGGACAAGCAAATGAAGCCTGTAATCAAGCGATCATCTTCA</genome_strand>
        <mrna_strand>TTTAATGTTATTCCTGATTCAATCCCAGAGTGGGTATTTGATTTTGTGCCTACACGTGGAGGTTACTTTATTGGAAACGTTAGTCCTGCAAGGATGGACTTCAGGTGGTTTGCTTTGGGTAACTGTATTGCAATCTTGTCTTCCCTTGCCACTCCAGAACAAGCTTCTGCTATTATGGATCTCATAGAATCCCGCTGGGAGGAGCTAGTAGCAGATATGCCTTTGAAGATATGCTATCCAGCAATTGAAAATCACGAATGGCGGATAGTAACTGGTTGTGATCCCAAGAATATTAGATGGAGTTACCATAATGGAGGATCTTGGCCAG...............................................................................................................................................................................................................................TGCTTTTGTGGTTGCTAACGGCTGCCTGCATTAAGACTGGACGGCCACAAATTGCAAGACGAGCAATTGATCTTGCTGAGAGCCGCTTACTCAAGGACAGCTGGCCTGAATATTATGATGGAAAGCTCGGCAGATACATTGGTAAACAAGCAAGGAAGCACCAGACATGGTCAATTGCTGGATATCTTGTAGCAAAGATGTTGCTGGAGGATCCTTCACACTTGGGAATGATCTCTTTGGAGGAGGACAAGCAAATGAAGCCTGTAATCAAGCGATCATCTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E324196" ref_strand="+" ref_description="SGN-E324196 [cTOC-4-H22]">
      <seq>ttctgttttggctcattttgcactactacttgctttcatttgagcctttttttcttttcctaaaaacttccaattggttaaagttttcaaatatcaaacaaatctttgtttgttgttacgccatggaatttacacagtcaaatagcaaaaacaaccaatatggtgggagtaatagcaataataatagtaatgaaaataatagcaatgtgatttctactaaaatagttaagaagccatcgaaagaccgtcacaccaaggtggatggtcgagggcggcgcattcgaatgccggctttatgcgccgtcagggtttttcagctaaccaaagaattgggtcataagtcggatggcgaaaccatagagtggctattgcaacaagctgaaccgtcgattatagctgcgacgggaacaggtacaattccggctaatttctcaactcttaatgtctctttacgcagcagcgggactacaatttcagctccgccgtcgaaatctgcgccgcttttcattcacggcggtgctgccactatgctgggtttccaccaccagattccgggcaacagttttggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0132E21.2" temp_strand="+" temp_description="C06SLm0132E21.2  AC211087.2 htgs_phase:3 submitted_to_sgn_as:C06SLm0132E21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="102734" stop="103901"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103034" g_stop="103601" g_length="568"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="569" r_length="569" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0132E21.2" gen_strand="+" ref_id="SGN-E324196" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>568</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0132E21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E324196" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103034" e_stop="103601"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTGTTTTGGCTCATTTTGCACTACTACTTGCTTTCATTTGAGCC-TTTTTTCTTTTCCTAAAAACTTCCAATTGGTTAAAGTTTTCAAATATCAAACAAATCTTTGTTTGTTGTTACGCCATGGAATTTAGAGAGTCAAATAGCAAAAACAACCAAGATGGTGGGAGTAATAGCAATAATAATAGTAATGAAAATAATAGCAATGTGATTTCTACTAAAATTGTTAAGAAGCCATCGAAAGACCGTCACACCAAGGTGGATGGTCGAGGGCGGCGCATTCGAATGCCGGCTTTATGCGCCGCCAGGGTTTTTCAGCTAACCAAAGAATTGGGTCATAAGTCGGATGGCGAAACCATAGAGTGGCTATTGCAACAAGCTGAACCGTCGATTATAGCTGCGACGGGAACAGGTACAATTCCGGCTAATTTCTCAACTCTTAATGTCTCTTTACGCAGCAGCGGGACTACAATTTCAGCTCCGCCGTCGAAATCTGCGCCGCTTTTCATTCACGGCGGTGCTGCCACTATGCTGGGTTTCCACCACCAGATTCCGGGCAACAGTTTTGGG</genome_strand>
        <mrna_strand>TTCTGTTTTGGCTCATTTTGCACTACTACTTGCTTTCATTTGAGCCTTTTTTTCTTTTCCTAAAAACTTCCAATTGGTTAAAGTTTTCAAATATCAAACAAATCTTTGTTTGTTGTTACGCCATGGAATTTACACAGTCAAATAGCAAAAACAACCAATATGGTGGGAGTAATAGCAATAATAATAGTAATGAAAATAATAGCAATGTGATTTCTACTAAAATAGTTAAGAAGCCATCGAAAGACCGTCACACCAAGGTGGATGGTCGAGGGCGGCGCATTCGAATGCCGGCTTTATGCGCCGTCAGGGTTTTTCAGCTAACCAAAGAATTGGGTCATAAGTCGGATGGCGAAACCATAGAGTGGCTATTGCAACAAGCTGAACCGTCGATTATAGCTGCGACGGGAACAGGTACAATTCCGGCTAATTTCTCAACTCTTAATGTCTCTTTACGCAGCAGCGGGACTACAATTTCAGCTCCGCCGTCGAAATCTGCGCCGCTTTTCATTCACGGCGGTGCTGCCACTATGCTGGGTTTCCACCACCAGATTCCGGGCAACAGTTTTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E303529" ref_strand="+" ref_description="SGN-E303529 [cLEX-2-B4]">
      <seq>ttgagccttttttcttttcctaaaaacttccaattggttaaagttttcaaatatcaaacaaatctttgtttgttgttacgccatggaatttagagagtcaaatagcaaaaacaaccaagatggtgggagtaatagcaataataatagtaatgaaaataatagcaatgtgatttctactaaaattgttaagaagccatcgaaagaccgtcacaccaaggtggatggtcgagggcggcgcattcgaatgccggctttatgcgccgccagggtttttcagctaaccaaagaattgggtcataagtcggatggcgaaaccatagagtggctattgcaacaagctgaaccgtcgattatagctgcgacgggaacaggtacaattccggctaatttctcaactcttaatgtctctttacgcagcagcgggactacaatttcagctccgccgtcgaaatctgcgccgcttttcattcacggcggtgctgccactatgctgggtttccaccaccagattccgggcaacagttttgggcaagacccagatgagaatttcatgaagaagaggtatagagaagatacaactgcagcatcaacttcaccatcgtcatcatcagctaaaccggaaagaaccggagttcaaggtcacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0132E21.2" temp_strand="+" temp_description="C06SLm0132E21.2  AC211087.2 htgs_phase:3 submitted_to_sgn_as:C06SLm0132E21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="102773" stop="104016"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103073" g_stop="103716" g_length="644"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="644" r_length="644" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0132E21.2" gen_strand="+" ref_id="SGN-E303529" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>644</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0132E21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E303529" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103073" e_stop="103716"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAGCCTTTTTTCTTTTCCTAAAAACTTCCAATTGGTTAAAGTTTTCAAATATCAAACAAATCTTTGTTTGTTGTTACGCCATGGAATTTAGAGAGTCAAATAGCAAAAACAACCAAGATGGTGGGAGTAATAGCAATAATAATAGTAATGAAAATAATAGCAATGTGATTTCTACTAAAATTGTTAAGAAGCCATCGAAAGACCGTCACACCAAGGTGGATGGTCGAGGGCGGCGCATTCGAATGCCGGCTTTATGCGCCGCCAGGGTTTTTCAGCTAACCAAAGAATTGGGTCATAAGTCGGATGGCGAAACCATAGAGTGGCTATTGCAACAAGCTGAACCGTCGATTATAGCTGCGACGGGAACAGGTACAATTCCGGCTAATTTCTCAACTCTTAATGTCTCTTTACGCAGCAGCGGGACTACAATTTCAGCTCCGCCGTCGAAATCTGCGCCGCTTTTCATTCACGGCGGTGCTGCCACTATGCTGGGTTTCCACCACCAGATTCCGGGCAACAGTTTTGGGCAAGACCCAGATGAGAATTTCATGAAGAAGAGGTATAGAGAAGATACAACTGCAGCATCAACTTCACCATCGTCATCATCAGCTAAACCGGAAAGAACCGGAGTTCAAGGTCACG</genome_strand>
        <mrna_strand>TTGAGCCTTTTTTCTTTTCCTAAAAACTTCCAATTGGTTAAAGTTTTCAAATATCAAACAAATCTTTGTTTGTTGTTACGCCATGGAATTTAGAGAGTCAAATAGCAAAAACAACCAAGATGGTGGGAGTAATAGCAATAATAATAGTAATGAAAATAATAGCAATGTGATTTCTACTAAAATTGTTAAGAAGCCATCGAAAGACCGTCACACCAAGGTGGATGGTCGAGGGCGGCGCATTCGAATGCCGGCTTTATGCGCCGCCAGGGTTTTTCAGCTAACCAAAGAATTGGGTCATAAGTCGGATGGCGAAACCATAGAGTGGCTATTGCAACAAGCTGAACCGTCGATTATAGCTGCGACGGGAACAGGTACAATTCCGGCTAATTTCTCAACTCTTAATGTCTCTTTACGCAGCAGCGGGACTACAATTTCAGCTCCGCCGTCGAAATCTGCGCCGCTTTTCATTCACGGCGGTGCTGCCACTATGCTGGGTTTCCACCACCAGATTCCGGGCAACAGTTTTGGGCAAGACCCAGATGAGAATTTCATGAAGAAGAGGTATAGAGAAGATACAACTGCAGCATCAACTTCACCATCGTCATCATCAGCTAAACCGGAAAGAACCGGAGTTCAAGGTCACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E268578" ref_strand="+" ref_description="SGN-E268578 [cLEI-13-H3]">
      <seq>cactatgctgggtttccaccaccagattccgggcaacagttttgggcaagacccagatgagaatttcatgaagaagaggtatagagaagatacaactgcagcatcaacttcaccatcgtcatcatcagctaaaccggaaagaaccggagttcaaggtcacgaaccggatcaagaatcgaaacccggttcatcgaatccctctagctacataccgactcccgccatgtgggctgttggtccggcggccggtaacgtcggaaacacgttctggatgctaccaggtacctcatcaaccatgcagagaattggtggtttcgagttaccgggaggtggccggttcagtccggttcaactaggatcaatgtttttgcagcagccacagccggttcagcagctggggttgggtgtgacagagacaaatatgggaatgttggcatcgatgaatgcatataacagtagtagtagtaggggtagtgggattgatttggggatgaatttggaacaacatcatcatcatcaaaatcagcctcaaggtagtgacagtggtgatgaaaatcacaaagattcccaatcataactccaacattgataccacaaaaagatgtgtgggactgtttttgtcaaatctcgagtttgagtcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0132E21.2" temp_strand="+" temp_description="C06SLm0132E21.2  AC211087.2 htgs_phase:3 submitted_to_sgn_as:C06SLm0132E21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="103256" stop="104498"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103556" g_stop="104198" g_length="643"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="643" r_length="643" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0132E21.2" gen_strand="+" ref_id="SGN-E268578" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>643</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0132E21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E268578" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103556" e_stop="104198"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTATGCTGGGTTTCCACCACCAGATTCCGGGCAACAGTTTTGGGCAAGACCCAGATGAGAATTTCATGAAGAAGAGGTATAGAGAAGATACAACTGCAGCATCAACTTCACCATCGTCATCATCAGCTAAACCGGAAAGAACCGGAGTTCAAGGTCACGAACCGGATCAAGAATCGAAACCCGGTTCATCGAATCCCTCTAGCTACATACCGACTCCCGCCATGTGGGCTGTTGGTCCGGCGGCCGGTAACGTCGGAAACACGTTCTGGATGCTACCAGGTACCTCATCAACCATGCAGAGAATTGGTGGTTTCGAGTTACCGGGAGGTGGCCGGTTCAGTCCGGTTCAACTAGGATCAATGTTTTTGCAGCAGCCACAGCCGGTTCAGCAGCTGGGGTTGGGTGTGACAGAGACAAATATGGGAATGTTGGCATCGATGAATGCATATAACAGTAGTAGTAGTAGGGGTAGTGGGATTGATTTGGGGATGAATTTGGAACAACATCATCATCATCAAAATCAGCCTCAAGGTAGTGACAGTGGTGATGAAAATCACAAAGATTCCCAATCATAACTCCAACATTGATACCACAAAAGGATGTGTGGGACTGTTTTTGTCAAATCTCGAGTTTGAGTCATG</genome_strand>
        <mrna_strand>CACTATGCTGGGTTTCCACCACCAGATTCCGGGCAACAGTTTTGGGCAAGACCCAGATGAGAATTTCATGAAGAAGAGGTATAGAGAAGATACAACTGCAGCATCAACTTCACCATCGTCATCATCAGCTAAACCGGAAAGAACCGGAGTTCAAGGTCACGAACCGGATCAAGAATCGAAACCCGGTTCATCGAATCCCTCTAGCTACATACCGACTCCCGCCATGTGGGCTGTTGGTCCGGCGGCCGGTAACGTCGGAAACACGTTCTGGATGCTACCAGGTACCTCATCAACCATGCAGAGAATTGGTGGTTTCGAGTTACCGGGAGGTGGCCGGTTCAGTCCGGTTCAACTAGGATCAATGTTTTTGCAGCAGCCACAGCCGGTTCAGCAGCTGGGGTTGGGTGTGACAGAGACAAATATGGGAATGTTGGCATCGATGAATGCATATAACAGTAGTAGTAGTAGGGGTAGTGGGATTGATTTGGGGATGAATTTGGAACAACATCATCATCATCAAAATCAGCCTCAAGGTAGTGACAGTGGTGATGAAAATCACAAAGATTCCCAATCATAACTCCAACATTGATACCACAAAAAGATGTGTGGGACTGTTTTTGTCAAATCTCGAGTTTGAGTCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E371256" ref_strand="+" ref_description="SGN-E371256 [TUS-27-A19]">
      <seq>cactatgctgggtttccaccaccagattccgggcaacagttttgggcaagacccagatgagaatttcatgaagaagaggtatagagaagatacaactgcagcatcaacttcaccatcgtcatcatcagctaaaccggaaagaaccggagttcaaggtcacgaaccggatcaagaatcgaaacccggttcatcgaatccctctagctacataccgactcccgccatgtgggctgttggtccggcggccggtaacgtcggaaacacgttctggatgctaccaggtacctcatcaaccatgcagagaattggtggtttcgagttaccgggaggtggccggttcagtccggttcaactaggatcaatgtttttgcagcagccacagccggttcagcagctggggttgggtgtgacagagacaaatatgggaatgttggcatcgatgaatgcatataacagtagtagtagtaggggtagtgggattgatttggggatgaatttggaacaacatcatcatcatcaaaatcagcctcaaggtagtgacagtggtgatgaaaatcacaaagattcccaatcataactccaacattgataccacaaaaggatgtgtgggactgttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0132E21.2" temp_strand="+" temp_description="C06SLm0132E21.2  AC211087.2 htgs_phase:3 submitted_to_sgn_as:C06SLm0132E21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="103256" stop="104472"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103556" g_stop="104172" g_length="617"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="617" r_length="617" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0132E21.2" gen_strand="+" ref_id="SGN-E371256" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>617</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0132E21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E371256" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103556" e_stop="104172"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTATGCTGGGTTTCCACCACCAGATTCCGGGCAACAGTTTTGGGCAAGACCCAGATGAGAATTTCATGAAGAAGAGGTATAGAGAAGATACAACTGCAGCATCAACTTCACCATCGTCATCATCAGCTAAACCGGAAAGAACCGGAGTTCAAGGTCACGAACCGGATCAAGAATCGAAACCCGGTTCATCGAATCCCTCTAGCTACATACCGACTCCCGCCATGTGGGCTGTTGGTCCGGCGGCCGGTAACGTCGGAAACACGTTCTGGATGCTACCAGGTACCTCATCAACCATGCAGAGAATTGGTGGTTTCGAGTTACCGGGAGGTGGCCGGTTCAGTCCGGTTCAACTAGGATCAATGTTTTTGCAGCAGCCACAGCCGGTTCAGCAGCTGGGGTTGGGTGTGACAGAGACAAATATGGGAATGTTGGCATCGATGAATGCATATAACAGTAGTAGTAGTAGGGGTAGTGGGATTGATTTGGGGATGAATTTGGAACAACATCATCATCATCAAAATCAGCCTCAAGGTAGTGACAGTGGTGATGAAAATCACAAAGATTCCCAATCATAACTCCAACATTGATACCACAAAAGGATGTGTGGGACTGTTT</genome_strand>
        <mrna_strand>CACTATGCTGGGTTTCCACCACCAGATTCCGGGCAACAGTTTTGGGCAAGACCCAGATGAGAATTTCATGAAGAAGAGGTATAGAGAAGATACAACTGCAGCATCAACTTCACCATCGTCATCATCAGCTAAACCGGAAAGAACCGGAGTTCAAGGTCACGAACCGGATCAAGAATCGAAACCCGGTTCATCGAATCCCTCTAGCTACATACCGACTCCCGCCATGTGGGCTGTTGGTCCGGCGGCCGGTAACGTCGGAAACACGTTCTGGATGCTACCAGGTACCTCATCAACCATGCAGAGAATTGGTGGTTTCGAGTTACCGGGAGGTGGCCGGTTCAGTCCGGTTCAACTAGGATCAATGTTTTTGCAGCAGCCACAGCCGGTTCAGCAGCTGGGGTTGGGTGTGACAGAGACAAATATGGGAATGTTGGCATCGATGAATGCATATAACAGTAGTAGTAGTAGGGGTAGTGGGATTGATTTGGGGATGAATTTGGAACAACATCATCATCATCAAAATCAGCCTCAAGGTAGTGACAGTGGTGATGAAAATCACAAAGATTCCCAATCATAACTCCAACATTGATACCACAAAAGGATGTGTGGGACTGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E711140" ref_strand="+" ref_description="SGN-E711140 [FB01AE06]">
      <seq>tagcaggaaaacgaacaaaggcaagagaacggcgatggcgttgaacaacggtttgcgttcatgtgcatcccttatctccaaaactgtgaagagagagttccactcaacaggcgtcaagagaatgggaggtcatggacatgacgaacctttttacattcacgcaaaacacatgtacaacttggacaggatgtcaaaccagaagctgaagatgactcttggtgtctggtctgcagtcgccattggtgttatagtcccagtttatgctgtcgtcttccagcaaaagaaaactgcttctggctagatcatcatgctattacgtctccaccacaataatgctgcccttggagcttccatgtatgaagatgaacctattgaattagagagcattaaatagctttcagttttgacttagctttaccctggtggttgcttttcttgtttctgttttggcacaacattggtatgcctggttcattaataatattttcttaactgaaaaccatattggttgaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaanccccgggggggggggcgggaacccatttcccccaaaaggggggaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0132E21.2" temp_strand="-" temp_description="C06SLm0132E21.2  AC211087.2 htgs_phase:3 submitted_to_sgn_as:C06SLm0132E21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="112651" stop="82521"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112351" g_stop="112266" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="86" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112265" i_stop="109478" i_length="2788">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109477" g_stop="109051" g_length="427"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="513" r_length="427" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="109050" i_stop="108200" i_length="851">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="108199" g_stop="108193" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="514" r_stop="520" r_length="7" r_score="0.857"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="108192" i_stop="108041" i_length="152">
            <donor d_prob="0.900" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.50"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="108040" g_stop="107973" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="521" r_stop="587" r_length="67" r_score="0.515"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="107972" i_stop="107075" i_length="898">
            <donor d_prob="0.000" d_score="0.40"/>
            <acceptor a_prob="0.977" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="107074" g_stop="107055" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="588" r_stop="607" r_length="20" r_score="0.650"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0132E21.2" gen_strand="-" ref_id="SGN-E711140" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>608</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0132E21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E711140" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112351" e_stop="112266"/>
          <exon e_start="109477" e_stop="109051"/>
          <exon e_start="108199" e_stop="108193"/>
          <exon e_start="108040" e_stop="107973"/>
          <exon e_start="107074" e_stop="107055"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGCAGGAAAACGAACAAAGGCAAGAGAACGGCGATGGCGTTGAACAACGGTTTGCGTTCATGTGCATCCCTTATCTCCAAAACTGGTATTCTCATCTCGTAGAACTTATTTTTTCTATTATCATTTGTTCATTTGGTTTTTTTTTAAAACTGATTTATGATTATTGGAATGATATGAGTCGATTGATACAGAGCTGATCGATACTTACTTTTTAAAAAAAAATTGTTGTTGATTTATTGTTAATACTGAATGTTAAGCTGAAAATATGAACAAGAGAAGTCAATTTAGATTTCCGCTGCTGATTTAGGTATCGGTTTTTTAGATCTACCATTTTCTGGGGTATGCGCAATTGGCATATTTTTGTGGATCTGTTTGATGAAAAGTCAAATTAGATTTCCGCTGCTGATTTAGGTATTGCTTTTTCAGATCTACCCATTTTCTGGGGTATGCGCAATTGGCGTATTTTTGTGGATCTGTTTGATTTATAAGAACATAGGTATACATTTGTGATTATTCATATGTTATAGATATATCAATCTAATAGTAGGATTTAGTTCAATGTTCTTAGGAACGTCCGCCCCTTCTTGTCCATTCTTTGTTCATGTCTATCTGTTAGTTATTGTCGTTACCTTTACATAAAGTATGTGTCTTTCATGAGTTTTTGTAAAGCTTGGTTAGAATTATGAGATTTTGGAGTGCATCTAGTCTAAAATAGAATCTCAACTTTGTAATTAAGGACAAAAGATTGCATATTGGGATGAAATGGTCCTGGATATGGTGGTTCAGATAGTTGATTCATTGATATTGGGAGGCAGGATAGGTTGGGATTGTCATCCCTCAAACCATCCTTCAAATAAATGAGACTATTGTTACCAATTTATAGCAATTCTGTGCTTCTGGTCTTGTGGCGCATAGAGAGATGATACTTCACTGTTAATGTTGTGTGTTCCTCCTGTATGAATTATGATGCAAGACTGCTGGTTTCACAGTGCTGCAATGAGCCCTGTTCTCTCTAAAGTAATACGTTAGACTAAAATATGAGTAGAAACATCTAAAGATCATGACTTCTATAATAGAACCAAATAATAATTTCAGGTGGGCTATACGTACAGTATTTAGATTTGAGCATGAGGTCATATCTATCCATGTTATGCACAGTGGCTAGTTGTTGATATGTGGATAAATCAGCTATTTATGTAAGCCCCCTCTGTGAACTTGTGTAAAAGTTGGCAACAAGTAACATTAAGGATATTAAACAAGGTGCTCCATGTGAGTTTTTACCCTTAATAGTTCCTACTTTTTGGCTCATTGGCTGCTATACAGCACATATGCGCCTCAATATAAGAAGCTCTCTTATAATCTCCTGTTTTAAGTTTCATGCTTAATACAAGGGAATTTTATTCTCTTTTTTCTCTGTAACAACCGCTACTTCCATCTTATCCAAAATATCTACTTCTGATAGCTCTAGCTCTGGTCTCTTTGAGGTGATTTTATGTTCTTTATTGGCAAGGACAAAAGTACAATTATTATCATTGACATTCCAAGTTGAGCCCTGGTACATATAACTATTGTTGTTTTCAGCTTGCATGGAGCTACTTCCAAGATAAGAGGTTTGATGTAATTTTGGTCTAGAGTAGTCCATAAGGCTGGCTCTGGATGCTAGAACGGTGTATATATCTTATGGTGTCTTGTTTGGCCCACATGAATACCTTTTCGTTTATTTGCTTCTAAAACTTTTAAAGAAGGTTCATCAATATTTTGCATCAATCTGACCCTCAGGGGTTTGGTTTAGCGCTTTGAAAATATAACACGTGATGTCTGGGTTGGGCGCACGTCACCAGTTCAAACCCTTCCGCTAGCAAGAGGTATTTATGTGGGAGCAGGGTACTCCAAGTTCAAACTTGTGAGCCAGTTGGAGTTGGTCTAGCGAACCCACAGACCATTTCTCAATTATAAAAAAAAATGCATTAGTCTGATGCAAACTTGTCCAAAAAAGACTAAAAACGGCAAAATTCTCCCCATCCGTTGGAGCAAAATCTCAGATACTCTTTTGGTATTTGAACCTGCACCTTCTGAAATATGCTTGGCATTATCAAGTTGTTCCATCTCTTAAGAGCTTGTTGAGAAAATATTTTCACTTTATAGGTTTACTCATCCTGATGACTATTATCAACCATAAATCACAGTACTAGCCTAGGCCCTGCATTATGAACCTGGATGCATGAAATAGTCAGAATAGTTTGGTCGATCTTCTGAGCATTGTTCTTTTTGTGAAACATGTGATTATCAAAAAAAAATAAGAATGATAGTGCTATCTGCTGGAAATGCATTTGAGGGACATATCTTTAGGTCTATGTGAAAATTTTATAAATGCTTCAATTCTATGAATATACTGATGTCAAAGAGGGAGAGCGATGGATAGTGGGTTTTATCAATTCAAATCATTAACTCAAAAATTAATTAGTCAACCTTCTAATAATTTGAGGAACCCTCCCTGGTAGCTCTCCCTCCTCCTTTGTCGGACAAGCATACTTCCATCAGTTTGACAATCTTTTCATTGGAACAGTGTGGCAATTGAAACGTGTTTTTCTACGGCCTGCTTGAATGACTTCGAATTATTTATTATGCCAACTTCTTTCTTTATGCACAAGTTCAAACGTCTGTCTTAACCGTTACATTTCAAACATTCTTTGATACTTGTTTAGTTAATTATACATGTTTTGAAACTTCCATTTCTCTCATATTTCATTTCTAATTGTCTTTCATCTTACCGTTTCTTTATGAAAAGTTTATTTCAATCAAATTTGGATGCTGTTGTTCATGCTTTTTATAAGTCTGACCTTACTGATAATTGATATTTATTGTTTGGTCAGTGAAGAGAGAGTTCCACTCAACAGGCGTCAAGAGAATGGGAGGTCATGGACATGACGAACCTTTTTACATTCACGCAAAACACATGTACAACTTGGACAGGATGTCAAACCAGAAGCTGAAGATGACTCTTGGTGTCTGGTCTGCAGTCGCCATTGGTGTTATAGTCCCAGTTTATGCTGTCGTCTTCCAGCAAAAGAAAACTGCTTCTGGCTAGATCATCATGCTATTACGTCTCCACCACAATAATGCTGCCCTTGGAGCTTCCATGTATGAAGATGAACCTATTGAATTAGAGAGCATTAAATAGCTTTCAGTTTTGACTTAGCTTTACCCTGGTGGTTGCTTTTCTTGTTTCTGTTTTGGCACAACATTGGTATGCCTGGTTCATTAATAATATTTTCTTAACTGAAAACCATATTGGTTGAACATGTGTCTGATTTAATATCCATTTTCTGACTGGCAATTACTCCTATCAATTCAAAGAGAATGTTCTTCCTTTTGGGGTAAAATCTCTATGATATGCCTGATATATAGCACACGTACCCAGCCAACAAAAATTGGTGTAGTATATTAGTATTTGGGCAAACTAAAATAAAAGGAAAAGGTTTTACAAATGTTACATAAAATGTTTCTTTCTGAATCCATAATCGACGGTTCAAAAAATGAGTATATAATCAATTGGAAGTTTCCATATCTTAAACTCTGATCACTGTTTGAAGAATTGCATAAGTTCATGTAAGAGAATCCTAGGCCAGTTTTATGGAAGTTACTTTTATATTTTTCTTCATATTTTCAAATTTTTACTTTTAAATCTGTTTCTTCAACTCTAGCGTTCCTTCATAGTCACAATCTTTTTACTGTGAAAATTTGTCTTCTTTTAATATATTTTACACTATATTATAAATAAATATAAAATGTATACTACATTGGGTGTTCTAATAATAATAATAATAATAATATTATTATTATTATTATTATTATTATTATTATTTTTAAAAAAGCATAGAAAATTTGAAGTTTAAATGAGGAACTCTTTATTTACAAGTCTGAAATCAAAACGGCAATAAATTTTTTTAAAAATTTCAAAAAGGCAACTCAACTAATTATGAAATTAACAGGGCATTAATTATAACGGTATCTAAATAAAATTTTCAAAAATGTGGCGCAAAATTTGATGAGCCTTAAAAGGCGCAACAACTTTTAGCCTTGTAAGGCTCAGTTGTCATGAGCCTTACAAGGCTCAGTTGTCAGCGCCTTGCATGTGGTTTTTGTTTTAGAAAAGAAATATCGTTTCATTCTCTTGTTTGTCAATTAGTTATTCTTTTTTTTTCATTTTATTTTCTTGGGTTAAAACTTGGACATTGTAATCTAATTGAGTTATTCTCTGGTACTACTTTCACATAATTTAATGTAGCTAAATTAAAATACTATCTCTTAAAAAAATATAAAACAAAAATTTATCACCTCAAACCCAATTAAATATGAATACGATAAACATTTCCAAGTTCTTAATATTAAAAGTCAATAAATGGGTGACTTATAAGCACTGGCAACACGCCTCTATATGCTTGTCGCAATTACGAGTAAAACGCGACAAGCATTGGCCCCTACTCTTTATTCATAAAACACATTCAGTGATAGTGTTTTATGAGTAAAATTATGTTTTTTTTATACATTGTCAAAATTAGTATATTGTCCCTACTCTTTATGCATAAAATGCGTTCAGTGATAGTTTTTTATGAGTAAAATTCTATTTCTTGTTATAAATTATTGAAGTTACTACATTGCTCCTACTATTTATGCATAAAATGTGTTCAGTGATAGCATTTTATTAGTTAAATTATGTTTCTTTTTATAAATTGTTGAAATTACTATATTGCCCCTACTCTTCATGCATAAAATGTGTTCAGTGACGGCATTTTATGAGTAAAATTATGTTTCTTTTTATAAATTGTTGAAATTACTATATTGTGTCTACTTTTTATTCATAAATAGCGTTCAGTAATAGCGTTTTATGAGTAAAATTATATTTCTTTCTTATAAATTATTGTATTTATTATATTACCCTTACTCTTTATTCATAAAACGCGTTCTTTACTTTATTCATAAAACGCGATCAGGATATCTCATTTTATCCCATAAACCAAACGACCCTTCCATAAGAACTGTTTTCAAAATCATGATGAAAGCGAAGATTGAAGAACCAAACAAATTTAGTAAGATAGGTCCTATTTAGTGTTTGATTCGCCTTTTCAATTGTTTTGTTATGTGGTACTTGAATCAATTATCTTTTTAAAATAATATTTTTATTTTCACGAGATAAAAATAAGAGTATATATATATATATACTCTTTAAATTCTACTTCTAATAATATAGTGAGGATATTATTGTTGTTGATTAGGATAAGGCAGACAACAAAAA</genome_strand>
        <mrna_strand>TAGCAGGAAAACGAACAAAGGCAAGAGAACGGCGATGGCGTTGAACAACGGTTTGCGTTCATGTGCATCCCTTATCTCCAAAACTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAGAGAGAGTTCCACTCAACAGGCGTCAAGAGAATGGGAGGTCATGGACATGACGAACCTTTTTACATTCACGCAAAACACATGTACAACTTGGACAGGATGTCAAACCAGAAGCTGAAGATGACTCTTGGTGTCTGGTCTGCAGTCGCCATTGGTGTTATAGTCCCAGTTTATGCTGTCGTCTTCCAGCAAAAGAAAACTGCTTCTGGCTAGATCATCATGCTATTACGTCTCCACCACAATAATGCTGCCCTTGGAGCTTCCATGTATGAAGATGAACCTATTGAATTAGAGAGCATTAAATAGCTTTCAGTTTTGACTTAGCTTTACCCTGGTGGTTGCTTTTCTTGTTTCTGTTTTGGCACAACATTGGTATGCCTGGTTCATTAATAATATTTTCTTAACTGAAAACCATATTGGTTGAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAA........................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANCCCCGGGGGGGGGGGCGGGA-ACCCATTTCCCC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAAGGGGGGAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E722972" ref_strand="+" ref_description="SGN-E722972 [FC18DF12]">
      <seq>aatcggccgaattgaacggtttgcgttcatgtgcatcccttatctccaaaactgtgaagagagagttccactcaacaggcgtcaagagaatgggaggtcatggacatgacgaacctttttacattcacgcaaaacacatgtacaacttggacaggatgtcaaaccagaagctgaagatgactcttggtgtctggtctgcagtcgccattggtgttatagtcccagtttatgctgtcgtcttccagcaaaagaaaactgcttctggctagatcatcatgctattacgtctccaccacaataatgctgcccttggagcttccatgtatgaagatgaacctattgaattagagagcattaaatagctttcagttttgacttagctttaccctggtggttgcttttcttgtttctgttttggcacaacattggtatgcctggttcattaataatattttcttaactgaaaaccatattggttgaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaccccccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0132E21.2" temp_strand="-" temp_description="C06SLm0132E21.2  AC211087.2 htgs_phase:3 submitted_to_sgn_as:C06SLm0132E21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="112605" stop="82520"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112305" g_stop="112266" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="54" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112265" i_stop="109478" i_length="2788">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109477" g_stop="109048" g_length="430"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="484" r_length="430" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="109047" i_stop="108041" i_length="1007">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.60"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="108040" g_stop="107975" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="485" r_stop="550" r_length="66" r_score="0.576"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0132E21.2" gen_strand="-" ref_id="SGN-E722972" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>536</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0132E21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E722972" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112305" e_stop="112266"/>
          <exon e_start="109477" e_stop="109048"/>
          <exon e_start="108040" e_stop="107975"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACGGTTTGCGTTCATGTGCATCCCTTATCTCCAAAACTGGTATTCTCATCTCGTAGAACTTATTTTTTCTATTATCATTTGTTCATTTGGTTTTTTTTTAAAACTGATTTATGATTATTGGAATGATATGAGTCGATTGATACAGAGCTGATCGATACTTACTTTTTAAAAAAAAATTGTTGTTGATTTATTGTTAATACTGAATGTTAAGCTGAAAATATGAACAAGAGAAGTCAATTTAGATTTCCGCTGCTGATTTAGGTATCGGTTTTTTAGATCTACCATTTTCTGGGGTATGCGCAATTGGCATATTTTTGTGGATCTGTTTGATGAAAAGTCAAATTAGATTTCCGCTGCTGATTTAGGTATTGCTTTTTCAGATCTACCCATTTTCTGGGGTATGCGCAATTGGCGTATTTTTGTGGATCTGTTTGATTTATAAGAACATAGGTATACATTTGTGATTATTCATATGTTATAGATATATCAATCTAATAGTAGGATTTAGTTCAATGTTCTTAGGAACGTCCGCCCCTTCTTGTCCATTCTTTGTTCATGTCTATCTGTTAGTTATTGTCGTTACCTTTACATAAAGTATGTGTCTTTCATGAGTTTTTGTAAAGCTTGGTTAGAATTATGAGATTTTGGAGTGCATCTAGTCTAAAATAGAATCTCAACTTTGTAATTAAGGACAAAAGATTGCATATTGGGATGAAATGGTCCTGGATATGGTGGTTCAGATAGTTGATTCATTGATATTGGGAGGCAGGATAGGTTGGGATTGTCATCCCTCAAACCATCCTTCAAATAAATGAGACTATTGTTACCAATTTATAGCAATTCTGTGCTTCTGGTCTTGTGGCGCATAGAGAGATGATACTTCACTGTTAATGTTGTGTGTTCCTCCTGTATGAATTATGATGCAAGACTGCTGGTTTCACAGTGCTGCAATGAGCCCTGTTCTCTCTAAAGTAATACGTTAGACTAAAATATGAGTAGAAACATCTAAAGATCATGACTTCTATAATAGAACCAAATAATAATTTCAGGTGGGCTATACGTACAGTATTTAGATTTGAGCATGAGGTCATATCTATCCATGTTATGCACAGTGGCTAGTTGTTGATATGTGGATAAATCAGCTATTTATGTAAGCCCCCTCTGTGAACTTGTGTAAAAGTTGGCAACAAGTAACATTAAGGATATTAAACAAGGTGCTCCATGTGAGTTTTTACCCTTAATAGTTCCTACTTTTTGGCTCATTGGCTGCTATACAGCACATATGCGCCTCAATATAAGAAGCTCTCTTATAATCTCCTGTTTTAAGTTTCATGCTTAATACAAGGGAATTTTATTCTCTTTTTTCTCTGTAACAACCGCTACTTCCATCTTATCCAAAATATCTACTTCTGATAGCTCTAGCTCTGGTCTCTTTGAGGTGATTTTATGTTCTTTATTGGCAAGGACAAAAGTACAATTATTATCATTGACATTCCAAGTTGAGCCCTGGTACATATAACTATTGTTGTTTTCAGCTTGCATGGAGCTACTTCCAAGATAAGAGGTTTGATGTAATTTTGGTCTAGAGTAGTCCATAAGGCTGGCTCTGGATGCTAGAACGGTGTATATATCTTATGGTGTCTTGTTTGGCCCACATGAATACCTTTTCGTTTATTTGCTTCTAAAACTTTTAAAGAAGGTTCATCAATATTTTGCATCAATCTGACCCTCAGGGGTTTGGTTTAGCGCTTTGAAAATATAACACGTGATGTCTGGGTTGGGCGCACGTCACCAGTTCAAACCCTTCCGCTAGCAAGAGGTATTTATGTGGGAGCAGGGTACTCCAAGTTCAAACTTGTGAGCCAGTTGGAGTTGGTCTAGCGAACCCACAGACCATTTCTCAATTATAAAAAAAAATGCATTAGTCTGATGCAAACTTGTCCAAAAAAGACTAAAAACGGCAAAATTCTCCCCATCCGTTGGAGCAAAATCTCAGATACTCTTTTGGTATTTGAACCTGCACCTTCTGAAATATGCTTGGCATTATCAAGTTGTTCCATCTCTTAAGAGCTTGTTGAGAAAATATTTTCACTTTATAGGTTTACTCATCCTGATGACTATTATCAACCATAAATCACAGTACTAGCCTAGGCCCTGCATTATGAACCTGGATGCATGAAATAGTCAGAATAGTTTGGTCGATCTTCTGAGCATTGTTCTTTTTGTGAAACATGTGATTATCAAAAAAAAATAAGAATGATAGTGCTATCTGCTGGAAATGCATTTGAGGGACATATCTTTAGGTCTATGTGAAAATTTTATAAATGCTTCAATTCTATGAATATACTGATGTCAAAGAGGGAGAGCGATGGATAGTGGGTTTTATCAATTCAAATCATTAACTCAAAAATTAATTAGTCAACCTTCTAATAATTTGAGGAACCCTCCCTGGTAGCTCTCCCTCCTCCTTTGTCGGACAAGCATACTTCCATCAGTTTGACAATCTTTTCATTGGAACAGTGTGGCAATTGAAACGTGTTTTTCTACGGCCTGCTTGAATGACTTCGAATTATTTATTATGCCAACTTCTTTCTTTATGCACAAGTTCAAACGTCTGTCTTAACCGTTACATTTCAAACATTCTTTGATACTTGTTTAGTTAATTATACATGTTTTGAAACTTCCATTTCTCTCATATTTCATTTCTAATTGTCTTTCATCTTACCGTTTCTTTATGAAAAGTTTATTTCAATCAAATTTGGATGCTGTTGTTCATGCTTTTTATAAGTCTGACCTTACTGATAATTGATATTTATTGTTTGGTCAGTGAAGAGAGAGTTCCACTCAACAGGCGTCAAGAGAATGGGAGGTCATGGACATGACGAACCTTTTTACATTCACGCAAAACACATGTACAACTTGGACAGGATGTCAAACCAGAAGCTGAAGATGACTCTTGGTGTCTGGTCTGCAGTCGCCATTGGTGTTATAGTCCCAGTTTATGCTGTCGTCTTCCAGCAAAAGAAAACTGCTTCTGGCTAGATCATCATGCTATTACGTCTCCACCACAATAATGCTGCCCTTGGAGCTTCCATGTATGAAGATGAACCTATTGAATTAGAGAGCATTAAATAGCTTTCAGTTTTGACTTAGCTTTACCCTGGTGGTTGCTTTTCTTGTTTCTGTTTTGGCACAACATTGGTATGCCTGGTTCATTAATAATATTTTCTTAACTGAAAACCATATTGGTTGAACATGTGTCTGATTTAATATCCATTTTCTGACTGGCAATTACTCCTATCAATTCAAAGAGAATGTTCTTCCTTTTGGGGTAAAATCTCTATGATATGCCTGATATATAGCACACGTACCCAGCCAACAAAAATTGGTGTAGTATATTAGTATTTGGGCAAACTAAAATAAAAGGAAAAGGTTTTACAAATGTTACATAAAATGTTTCTTTCTGAATCCATAATCGACGGTTCAAAAAATGAGTATATAATCAATTGGAAGTTTCCATATCTTAAACTCTGATCACTGTTTGAAGAATTGCATAAGTTCATGTAAGAGAATCCTAGGCCAGTTTTATGGAAGTTACTTTTATATTTTTCTTCATATTTTCAAATTTTTACTTTTAAATCTGTTTCTTCAACTCTAGCGTTCCTTCATAGTCACAATCTTTTTACTGTGAAAATTTGTCTTCTTTTAATATATTTTACACTATATTATAAATAAATATAAAATGTATACTACATTGGGTGTTCTAATAATAATAATAATAATAATATTATTATTATTATTATTATTATTATTATTATTTTTAAAAAAGCATAGAAAATTTGAAGTTTAAATGAGGAACTCTTTATTTACAAGTCTGAAATCAAAACGGCAATAAATTTTTTTAAAAATTTCAAAAAGGCAACTCAACTAATTATGAAATTAACAGGGCATTAATTATAACGGTATCTAAATAAAATTTTCAAAAATGTGGCGCAAAATTTGATGAGCCTTAAAAGGCGCAACAACTTTTAGCCTTGTAAGGCTCAGTTGTCATGAGCCTTACAAGGCTCAGTTGTCAGCGCCTTGCATGTGGTTTTTGTTTTAGAAAAGAAATATCGTTTCATTCTCTTGTTTGTCAATTAGTTATTCTTTTTTTTTCATTTTATTTTCTTGGGTTAAAACTTGGACATTGTAATCTAATTGAGTTATTCTCTGGTACTACTTTCACATAATTTAATGTAGCTAAATTAAAATACTATCTCTTAAAAAAATATAAAACAAAAATTTATCACCTCAAACCCAATTAAATATGAATACGATAAACATTTCC</genome_strand>
        <mrna_strand>AACGGTTTGCGTTCATGTGCATCCCTTATCTCCAAAACTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAGAGAGAGTTCCACTCAACAGGCGTCAAGAGAATGGGAGGTCATGGACATGACGAACCTTTTTACATTCACGCAAAACACATGTACAACTTGGACAGGATGTCAAACCAGAAGCTGAAGATGACTCTTGGTGTCTGGTCTGCAGTCGCCATTGGTGTTATAGTCCCAGTTTATGCTGTCGTCTTCCAGCAAAAGAAAACTGCTTCTGGCTAGATCATCATGCTATTACGTCTCCACCACAATAATGCTGCCCTTGGAGCTTCCATGTATGAAGATGAACCTATTGAATTAGAGAGCATTAAATAGCTTTCAGTTTTGACTTAGCTTTACCCTGGTGGTTGCTTTTCTTGTTTCTGTTTTGGCACAACATTGGTATGCCTGGTTCATTAATAATATTTTCTTAACTGAAAACCATATTGGTTGAAAAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E357758" ref_strand="+" ref_description="SGN-E357758 [cTOS-24-J24]">
      <seq>tcgagtttttttttttttttttttttttttttttttttgaattgataggagtaattgccagtcagaaaatggatattaaatcagacacatgttcaaccaatatggttttcagttaagaaaatattattaatgaaccaggcataccaatgttgtgccaaaacagaaacaagaaaagcaaccaccagggtaaagctaagtcaaaactgaaagctatttaatgctctctaattcaataggttcatcttcatacatggaagctccaagggcagcattattgtggtggagacgtaatagcatgatgatctagccagaagcagttttcttttgctggaagacgacagcataaactgggactataacaccaatggcgactgcagaccagacaccaagagtcatcttcagcttctggtttgacatcctgtccaagttgtacatgtgttttgcgtgaatgtaaaaagggtcgtcatgtccatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0132E21.2" temp_strand="+" temp_description="C06SLm0132E21.2  AC211087.2 htgs_phase:3 submitted_to_sgn_as:C06SLm0132E21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="82523" stop="109733"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108008" g_stop="108040" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="0.697"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108041" i_stop="108992" i_length="952">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108993" g_stop="109433" g_length="441"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="474" r_length="441" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0132E21.2" gen_strand="+" ref_id="SGN-E357758" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>474</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0132E21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E357758" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108008" e_stop="108040"/>
          <exon e_start="108993" e_stop="109433"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAGGTGATAAATTTTTGTTTTATATTTTTTTAAGAGATAGTATTTTAATTTAGCTACATTAAATTATGTGAAAGTAGTACCAGAGAATAACTCAATTAGATTACAATGTCCAAGTTTTAACCCAAGAAAATAAAATGAAAAAAAAAGAATAACTAATTGACAAACAAGAGAATGAAACGATATTTCTTTTCTAAAACAAAAACCACATGCAAGGCGCTGACAACTGAGCCTTGTAAGGCTCATGACAACTGAGCCTTACAAGGCTAAAAGTTGTTGCGCCTTTTAAGGCTCATCAAATTTTGCGCCACATTTTTGAAAATTTTATTTAGATACCGTTATAATTAATGCCCTGTTAATTTCATAATTAGTTGAGTTGCCTTTTTGAAATTTTTAAAAAAATTTATTGCCGTTTTGATTTCAGACTTGTAAATAAAGAGTTCCTCATTTAAACTTCAAATTTTCTATGCTTTTTTAAAAATAATAATAATAATAATAATAATAATAATAATATTATTATTATTATTATTATTAGAACACCCAATGTAGTATACATTTTATATTTATTTATAATATAGTGTAAAATATATTAAAAGAAGACAAATTTTCACAGTAAAAAGATTGTGACTATGAAGGAACGCTAGAGTTGAAGAAACAGATTTAAAAGTAAAAATTTGAAAATATGAAGAAAAATATAAAAGTAACTTCCATAAAACTGGCCTAGGATTCTCTTACATGAACTTATGCAATTCTTCAAACAGTGATCAGAGTTTAAGATATGGAAACTTCCAATTGATTATATACTCATTTTTTGAACCGTCGATTATGGATTCAGAAAGAAACATTTTATGTAACATTTGTAAAACCTTTTCCTTTTATTTTAGTTTGCCCAAATACTAATATACTACACCAATTTTTGTTGGCTGGGTACGTGTGCTATATATCAGGCATATCATAGAGATTTTACCCCAAAAGGAAGAACATTCTCTTTGAATTGATAGGAGTAATTGCCAGTCAGAAAATGGATATTAAATCAGACACATGTTCAACCAATATGGTTTTCAGTTAAGAAAATATTATTAATGAACCAGGCATACCAATGTTGTGCCAAAACAGAAACAAGAAAAGCAACCACCAGGGTAAAGCTAAGTCAAAACTGAAAGCTATTTAATGCTCTCTAATTCAATAGGTTCATCTTCATACATGGAAGCTCCAAGGGCAGCATTATTGTGGTGGAGACGTAATAGCATGATGATCTAGCCAGAAGCAGTTTTCTTTTGCTGGAAGACGACAGCATAAACTGGGACTATAACACCAATGGCGACTGCAGACCAGACACCAAGAGTCATCTTCAGCTTCTGGTTTGACATCCTGTCCAAGTTGTACATGTGTTTTGCGTGAATGTAAAAAGGTTCGTCATGTCCATG</genome_strand>
        <mrna_strand>TCGAGTTTTTTTTTTTTTTTTTTTTTTTTTTTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTGAATTGATAGGAGTAATTGCCAGTCAGAAAATGGATATTAAATCAGACACATGTTCAACCAATATGGTTTTCAGTTAAGAAAATATTATTAATGAACCAGGCATACCAATGTTGTGCCAAAACAGAAACAAGAAAAGCAACCACCAGGGTAAAGCTAAGTCAAAACTGAAAGCTATTTAATGCTCTCTAATTCAATAGGTTCATCTTCATACATGGAAGCTCCAAGGGCAGCATTATTGTGGTGGAGACGTAATAGCATGATGATCTAGCCAGAAGCAGTTTTCTTTTGCTGGAAGACGACAGCATAAACTGGGACTATAACACCAATGGCGACTGCAGACCAGACACCAAGAGTCATCTTCAGCTTCTGGTTTGACATCCTGTCCAAGTTGTACATGTGTTTTGCGTGAATGTAAAAAGGGTCGTCATGTCCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E696978" ref_strand="+" ref_description="SGN-E696978 [LH_Ea10I16](-)">
      <seq>ctactccgagcgtccatagcaggaaaacgaagaaaggcaagagaacggcgatggcgttgaacaacggcttgcgttcatgtgcatccattatctccaaaactgtgaagagagagttccactcaacaggcgtcaagagaatgggaggtcatggacatgacgaacctttttaccttcatgcaaaacacatgtacaacttggacaggatgtcaaaccagaagctgaagatgactcttggtgtttggtttgcagtcgccattggtgttatagtcccagtttatgctgtcgtcttccagcaaaagaaaactgcttctggctagatcatcatgctattacgtctcccccacaataatgctgcccttggagcttccatgtatgaagatgaacctattgaattagagagcattaaatagctttcagttttgacttagctttaccctggtggttgcttttcttgtttttgatggggcacaacattggtatgcctggttcattaattttaaaggttaactgaaaaccatattggtgaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0132E21.2" temp_strand="-" temp_description="C06SLm0132E21.2  AC211087.2 htgs_phase:3 submitted_to_sgn_as:C06SLm0132E21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="112667" stop="82532"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112367" g_stop="112266" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="102" r_length="102" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112265" i_stop="109478" i_length="2788">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109477" g_stop="109051" g_length="427"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="527" r_length="425" r_score="0.960"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="109050" i_stop="108041" i_length="1010">
            <donor d_prob="0.000" d_score="0.84"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="108040" g_stop="108021" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="528" r_stop="547" r_length="20" r_score="0.850"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0132E21.2" gen_strand="-" ref_id="SGN-E696978" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>549</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0132E21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E696978" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112367" e_stop="112266"/>
          <exon e_start="109477" e_stop="109051"/>
          <exon e_start="108040" e_stop="108021"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACTCCGAGCGTCCATAGCAGGAAAACGAACAAAGGCAAGAGAACGGCGATGGCGTTGAACAACGGTTTGCGTTCATGTGCATCCCTTATCTCCAAAACTGGTATTCTCATCTCGTAGAACTTATTTTTTCTATTATCATTTGTTCATTTGGTTTTTTTTTAAAACTGATTTATGATTATTGGAATGATATGAGTCGATTGATACAGAGCTGATCGATACTTACTTTTTAAAAAAAAATTGTTGTTGATTTATTGTTAATACTGAATGTTAAGCTGAAAATATGAACAAGAGAAGTCAATTTAGATTTCCGCTGCTGATTTAGGTATCGGTTTTTTAGATCTACCATTTTCTGGGGTATGCGCAATTGGCATATTTTTGTGGATCTGTTTGATGAAAAGTCAAATTAGATTTCCGCTGCTGATTTAGGTATTGCTTTTTCAGATCTACCCATTTTCTGGGGTATGCGCAATTGGCGTATTTTTGTGGATCTGTTTGATTTATAAGAACATAGGTATACATTTGTGATTATTCATATGTTATAGATATATCAATCTAATAGTAGGATTTAGTTCAATGTTCTTAGGAACGTCCGCCCCTTCTTGTCCATTCTTTGTTCATGTCTATCTGTTAGTTATTGTCGTTACCTTTACATAAAGTATGTGTCTTTCATGAGTTTTTGTAAAGCTTGGTTAGAATTATGAGATTTTGGAGTGCATCTAGTCTAAAATAGAATCTCAACTTTGTAATTAAGGACAAAAGATTGCATATTGGGATGAAATGGTCCTGGATATGGTGGTTCAGATAGTTGATTCATTGATATTGGGAGGCAGGATAGGTTGGGATTGTCATCCCTCAAACCATCCTTCAAATAAATGAGACTATTGTTACCAATTTATAGCAATTCTGTGCTTCTGGTCTTGTGGCGCATAGAGAGATGATACTTCACTGTTAATGTTGTGTGTTCCTCCTGTATGAATTATGATGCAAGACTGCTGGTTTCACAGTGCTGCAATGAGCCCTGTTCTCTCTAAAGTAATACGTTAGACTAAAATATGAGTAGAAACATCTAAAGATCATGACTTCTATAATAGAACCAAATAATAATTTCAGGTGGGCTATACGTACAGTATTTAGATTTGAGCATGAGGTCATATCTATCCATGTTATGCACAGTGGCTAGTTGTTGATATGTGGATAAATCAGCTATTTATGTAAGCCCCCTCTGTGAACTTGTGTAAAAGTTGGCAACAAGTAACATTAAGGATATTAAACAAGGTGCTCCATGTGAGTTTTTACCCTTAATAGTTCCTACTTTTTGGCTCATTGGCTGCTATACAGCACATATGCGCCTCAATATAAGAAGCTCTCTTATAATCTCCTGTTTTAAGTTTCATGCTTAATACAAGGGAATTTTATTCTCTTTTTTCTCTGTAACAACCGCTACTTCCATCTTATCCAAAATATCTACTTCTGATAGCTCTAGCTCTGGTCTCTTTGAGGTGATTTTATGTTCTTTATTGGCAAGGACAAAAGTACAATTATTATCATTGACATTCCAAGTTGAGCCCTGGTACATATAACTATTGTTGTTTTCAGCTTGCATGGAGCTACTTCCAAGATAAGAGGTTTGATGTAATTTTGGTCTAGAGTAGTCCATAAGGCTGGCTCTGGATGCTAGAACGGTGTATATATCTTATGGTGTCTTGTTTGGCCCACATGAATACCTTTTCGTTTATTTGCTTCTAAAACTTTTAAAGAAGGTTCATCAATATTTTGCATCAATCTGACCCTCAGGGGTTTGGTTTAGCGCTTTGAAAATATAACACGTGATGTCTGGGTTGGGCGCACGTCACCAGTTCAAACCCTTCCGCTAGCAAGAGGTATTTATGTGGGAGCAGGGTACTCCAAGTTCAAACTTGTGAGCCAGTTGGAGTTGGTCTAGCGAACCCACAGACCATTTCTCAATTATAAAAAAAAATGCATTAGTCTGATGCAAACTTGTCCAAAAAAGACTAAAAACGGCAAAATTCTCCCCATCCGTTGGAGCAAAATCTCAGATACTCTTTTGGTATTTGAACCTGCACCTTCTGAAATATGCTTGGCATTATCAAGTTGTTCCATCTCTTAAGAGCTTGTTGAGAAAATATTTTCACTTTATAGGTTTACTCATCCTGATGACTATTATCAACCATAAATCACAGTACTAGCCTAGGCCCTGCATTATGAACCTGGATGCATGAAATAGTCAGAATAGTTTGGTCGATCTTCTGAGCATTGTTCTTTTTGTGAAACATGTGATTATCAAAAAAAAATAAGAATGATAGTGCTATCTGCTGGAAATGCATTTGAGGGACATATCTTTAGGTCTATGTGAAAATTTTATAAATGCTTCAATTCTATGAATATACTGATGTCAAAGAGGGAGAGCGATGGATAGTGGGTTTTATCAATTCAAATCATTAACTCAAAAATTAATTAGTCAACCTTCTAATAATTTGAGGAACCCTCCCTGGTAGCTCTCCCTCCTCCTTTGTCGGACAAGCATACTTCCATCAGTTTGACAATCTTTTCATTGGAACAGTGTGGCAATTGAAACGTGTTTTTCTACGGCCTGCTTGAATGACTTCGAATTATTTATTATGCCAACTTCTTTCTTTATGCACAAGTTCAAACGTCTGTCTTAACCGTTACATTTCAAACATTCTTTGATACTTGTTTAGTTAATTATACATGTTTTGAAACTTCCATTTCTCTCATATTTCATTTCTAATTGTCTTTCATCTTACCGTTTCTTTATGAAAAGTTTATTTCAATCAAATTTGGATGCTGTTGTTCATGCTTTTTATAAGTCTGACCTTACTGATAATTGATATTTATTGTTTGGTCAGTGAAGAGAGAGTTCCACTCAACAGGCGTCAAGAGAATGGGAGGTCATGGACATGACGAACCTTTTTACATTCACGCAAAACACATGTACAACTTGGACAGGATGTCAAACCAGAAGCTGAAGATGACTCTTGGTGTCTGGTCTGCAGTCGCCATTGGTGTTATAGTCCCAGTTTATGCTGTCGTCTTCCAGCAAAAGAAAACTGCTTCTGGCTAGATCATCATGCTATTACGTCTCCACCACAATAATGCTGCCCTTGGAGCTTCCATGTATGAAGATGAACCTATTGAATTAGAGAGCATTAAATAGCTTTCAGTTTTGACTTAGCTTTACCCTGGTGGTTGCTTTTCTTGTTTCTGTTTTGGCACAACATTGGTATGCCTGGTTCATTAATAATATTTTCTTAACTGAAAACCATATTGGTTGAACATGTGTCTGATTTAATATCCATTTTCTGACTGGCAATTACTCCTATCAATTCAAAGAGAATGTTCTTCCTTTTGGGGTAAAATCTCTATGATATGCCTGATATATAGCACACGTACCCAGCCAACAAAAATTGGTGTAGTATATTAGTATTTGGGCAAACTAAAATAAAAGGAAAAGGTTTTACAAATGTTACATAAAATGTTTCTTTCTGAATCCATAATCGACGGTTCAAAAAATGAGTATATAATCAATTGGAAGTTTCCATATCTTAAACTCTGATCACTGTTTGAAGAATTGCATAAGTTCATGTAAGAGAATCCTAGGCCAGTTTTATGGAAGTTACTTTTATATTTTTCTTCATATTTTCAAATTTTTACTTTTAAATCTGTTTCTTCAACTCTAGCGTTCCTTCATAGTCACAATCTTTTTACTGTGAAAATTTGTCTTCTTTTAATATATTTTACACTATATTATAAATAAATATAAAATGTATACTACATTGGGTGTTCTAATAATAATAATAATAATAATATTATTATTATTATTATTATTATTATTATTATTTTTAAAAAAGCATAGAAAATTTGAAGTTTAAATGAGGAACTCTTTATTTACAAGTCTGAAATCAAAACGGCAATAAATTTTTTTAAAAATTTCAAAAAGGCAACTCAACTAATTATGAAATTAACAGGGCATTAATTATAACGGTATCTAAATAAAATTTTCAAAAATGTGGCGCAAAATTTGATGAGCCTTAAAAGGCGCAACAACTTTTAGCCTTGTAAGGCTCAGTTGTCATGAGCCTTACAAGGCTCAGTTGTCAGCGCCTTGCATGTGGTTTTTGTTTTAGAAAAGAAATATCGTTTCATTCTCTTGTTTGTCAATTAGTTATTCTTTTTTTTTCATTTTATTTTCTTGGGTTAAAACTTGGACATTGTAATCTAATTGAGTTATTCTCTGGTACTACTTTCACATAATTTAATGTAGCTAAATTAAAATACTATCTCTTAAAAAAATATAAAACAAAAA</genome_strand>
        <mrna_strand>CTACTCCGAGCGTCCATAGCAGGAAAACGAAGAAAGGCAAGAGAACGGCGATGGCGTTGAACAACGGCTTGCGTTCATGTGCATCCATTATCTCCAAAACTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAGAGAGAGTTCCACTCAACAGGCGTCAAGAGAATGGGAGGTCATGGACATGACGAACCTTTTTACCTTCATGCAAAACACATGTACAACTTGGACAGGATGTCAAACCAGAAGCTGAAGATGACTCTTGGTGTTTGGTTTGCAGTCGCCATTGGTGTTATAGTCCCAGTTTATGCTGTCGTCTTCCAGCAAAAGAAAACTGCTTCTGGCTAGATCATCATGCTATTACGTCTCCCCCACAATAATGCTGCCCTTGGAGCTTCCATGTATGAAGATGAACCTATTGAATTAGAGAGCATTAAATAGCTTTCAGTTTTGACTTAGCTTTACCCTGGTGGTTGCTTTTCTTGTTTTTGATGGGGCACAACATTGGTATGCCTGGTTCATTAATTTTA-AAGGTTAACTGAAAACCATATTGG-TGAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E552082" ref_strand="+" ref_description="SGN-E552082 [cTSB-2-M19]">
      <seq>agcaggaaaacgaacaaaggcaagagaacggcgatggcgttgaacaacggtttgcgttcatgtgcatcccttatctccaaaactgtgaagagagagttccactcaacaggcgtcaagagaatgggaggtcatggacatgacgaacctttttacattcacgcaaaacacatgtacaacttggacaggatgtcaaaccagaagctgaagatgactcttggtgtctggtctgcagtcgccattggtgttatagtcccagtttatgctgtcgtcttccagcaaaagaaaactgcttctggctagatcatcatgctattacgtctccaccacaataatgctgcccttggagcttccatgtatgaagatgaacctattgaattagagagcattaaatagctttcagttttgacttagctttaccctggtggttgcttttcttgtttctgttttggcacaacattggtatgcctggttcattaataatattttcttaactgaaaaccatattggttgaacatgtgtctgatttaatatccattttctgactggcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0132E21.2" temp_strand="-" temp_description="C06SLm0132E21.2  AC211087.2 htgs_phase:3 submitted_to_sgn_as:C06SLm0132E21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="112650" stop="82508"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112350" g_stop="112266" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112265" i_stop="109478" i_length="2788">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109477" g_stop="109015" g_length="463"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="548" r_length="463" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="109014" i_stop="108200" i_length="815">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="108199" g_stop="108193" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="549" r_stop="555" r_length="7" r_score="0.857"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="108192" i_stop="108063" i_length="130">
            <donor d_prob="0.900" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.62"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="108062" g_stop="108021" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="556" r_stop="597" r_length="42" r_score="0.619"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0132E21.2" gen_strand="-" ref_id="SGN-E552082" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>597</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0132E21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E552082" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112350" e_stop="112266"/>
          <exon e_start="109477" e_stop="109015"/>
          <exon e_start="108199" e_stop="108193"/>
          <exon e_start="108062" e_stop="108021"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAGGAAAACGAACAAAGGCAAGAGAACGGCGATGGCGTTGAACAACGGTTTGCGTTCATGTGCATCCCTTATCTCCAAAACTGGTATTCTCATCTCGTAGAACTTATTTTTTCTATTATCATTTGTTCATTTGGTTTTTTTTTAAAACTGATTTATGATTATTGGAATGATATGAGTCGATTGATACAGAGCTGATCGATACTTACTTTTTAAAAAAAAATTGTTGTTGATTTATTGTTAATACTGAATGTTAAGCTGAAAATATGAACAAGAGAAGTCAATTTAGATTTCCGCTGCTGATTTAGGTATCGGTTTTTTAGATCTACCATTTTCTGGGGTATGCGCAATTGGCATATTTTTGTGGATCTGTTTGATGAAAAGTCAAATTAGATTTCCGCTGCTGATTTAGGTATTGCTTTTTCAGATCTACCCATTTTCTGGGGTATGCGCAATTGGCGTATTTTTGTGGATCTGTTTGATTTATAAGAACATAGGTATACATTTGTGATTATTCATATGTTATAGATATATCAATCTAATAGTAGGATTTAGTTCAATGTTCTTAGGAACGTCCGCCCCTTCTTGTCCATTCTTTGTTCATGTCTATCTGTTAGTTATTGTCGTTACCTTTACATAAAGTATGTGTCTTTCATGAGTTTTTGTAAAGCTTGGTTAGAATTATGAGATTTTGGAGTGCATCTAGTCTAAAATAGAATCTCAACTTTGTAATTAAGGACAAAAGATTGCATATTGGGATGAAATGGTCCTGGATATGGTGGTTCAGATAGTTGATTCATTGATATTGGGAGGCAGGATAGGTTGGGATTGTCATCCCTCAAACCATCCTTCAAATAAATGAGACTATTGTTACCAATTTATAGCAATTCTGTGCTTCTGGTCTTGTGGCGCATAGAGAGATGATACTTCACTGTTAATGTTGTGTGTTCCTCCTGTATGAATTATGATGCAAGACTGCTGGTTTCACAGTGCTGCAATGAGCCCTGTTCTCTCTAAAGTAATACGTTAGACTAAAATATGAGTAGAAACATCTAAAGATCATGACTTCTATAATAGAACCAAATAATAATTTCAGGTGGGCTATACGTACAGTATTTAGATTTGAGCATGAGGTCATATCTATCCATGTTATGCACAGTGGCTAGTTGTTGATATGTGGATAAATCAGCTATTTATGTAAGCCCCCTCTGTGAACTTGTGTAAAAGTTGGCAACAAGTAACATTAAGGATATTAAACAAGGTGCTCCATGTGAGTTTTTACCCTTAATAGTTCCTACTTTTTGGCTCATTGGCTGCTATACAGCACATATGCGCCTCAATATAAGAAGCTCTCTTATAATCTCCTGTTTTAAGTTTCATGCTTAATACAAGGGAATTTTATTCTCTTTTTTCTCTGTAACAACCGCTACTTCCATCTTATCCAAAATATCTACTTCTGATAGCTCTAGCTCTGGTCTCTTTGAGGTGATTTTATGTTCTTTATTGGCAAGGACAAAAGTACAATTATTATCATTGACATTCCAAGTTGAGCCCTGGTACATATAACTATTGTTGTTTTCAGCTTGCATGGAGCTACTTCCAAGATAAGAGGTTTGATGTAATTTTGGTCTAGAGTAGTCCATAAGGCTGGCTCTGGATGCTAGAACGGTGTATATATCTTATGGTGTCTTGTTTGGCCCACATGAATACCTTTTCGTTTATTTGCTTCTAAAACTTTTAAAGAAGGTTCATCAATATTTTGCATCAATCTGACCCTCAGGGGTTTGGTTTAGCGCTTTGAAAATATAACACGTGATGTCTGGGTTGGGCGCACGTCACCAGTTCAAACCCTTCCGCTAGCAAGAGGTATTTATGTGGGAGCAGGGTACTCCAAGTTCAAACTTGTGAGCCAGTTGGAGTTGGTCTAGCGAACCCACAGACCATTTCTCAATTATAAAAAAAAATGCATTAGTCTGATGCAAACTTGTCCAAAAAAGACTAAAAACGGCAAAATTCTCCCCATCCGTTGGAGCAAAATCTCAGATACTCTTTTGGTATTTGAACCTGCACCTTCTGAAATATGCTTGGCATTATCAAGTTGTTCCATCTCTTAAGAGCTTGTTGAGAAAATATTTTCACTTTATAGGTTTACTCATCCTGATGACTATTATCAACCATAAATCACAGTACTAGCCTAGGCCCTGCATTATGAACCTGGATGCATGAAATAGTCAGAATAGTTTGGTCGATCTTCTGAGCATTGTTCTTTTTGTGAAACATGTGATTATCAAAAAAAAATAAGAATGATAGTGCTATCTGCTGGAAATGCATTTGAGGGACATATCTTTAGGTCTATGTGAAAATTTTATAAATGCTTCAATTCTATGAATATACTGATGTCAAAGAGGGAGAGCGATGGATAGTGGGTTTTATCAATTCAAATCATTAACTCAAAAATTAATTAGTCAACCTTCTAATAATTTGAGGAACCCTCCCTGGTAGCTCTCCCTCCTCCTTTGTCGGACAAGCATACTTCCATCAGTTTGACAATCTTTTCATTGGAACAGTGTGGCAATTGAAACGTGTTTTTCTACGGCCTGCTTGAATGACTTCGAATTATTTATTATGCCAACTTCTTTCTTTATGCACAAGTTCAAACGTCTGTCTTAACCGTTACATTTCAAACATTCTTTGATACTTGTTTAGTTAATTATACATGTTTTGAAACTTCCATTTCTCTCATATTTCATTTCTAATTGTCTTTCATCTTACCGTTTCTTTATGAAAAGTTTATTTCAATCAAATTTGGATGCTGTTGTTCATGCTTTTTATAAGTCTGACCTTACTGATAATTGATATTTATTGTTTGGTCAGTGAAGAGAGAGTTCCACTCAACAGGCGTCAAGAGAATGGGAGGTCATGGACATGACGAACCTTTTTACATTCACGCAAAACACATGTACAACTTGGACAGGATGTCAAACCAGAAGCTGAAGATGACTCTTGGTGTCTGGTCTGCAGTCGCCATTGGTGTTATAGTCCCAGTTTATGCTGTCGTCTTCCAGCAAAAGAAAACTGCTTCTGGCTAGATCATCATGCTATTACGTCTCCACCACAATAATGCTGCCCTTGGAGCTTCCATGTATGAAGATGAACCTATTGAATTAGAGAGCATTAAATAGCTTTCAGTTTTGACTTAGCTTTACCCTGGTGGTTGCTTTTCTTGTTTCTGTTTTGGCACAACATTGGTATGCCTGGTTCATTAATAATATTTTCTTAACTGAAAACCATATTGGTTGAACATGTGTCTGATTTAATATCCATTTTCTGACTGGCAATTACTCCTATCAATTCAAAGAGAATGTTCTTCCTTTTGGGGTAAAATCTCTATGATATGCCTGATATATAGCACACGTACCCAGCCAACAAAAATTGGTGTAGTATATTAGTATTTGGGCAAACTAAAATAAAAGGAAAAGGTTTTACAAATGTTACATAAAATGTTTCTTTCTGAATCCATAATCGACGGTTCAAAAAATGAGTATATAATCAATTGGAAGTTTCCATATCTTAAACTCTGATCACTGTTTGAAGAATTGCATAAGTTCATGTAAGAGAATCCTAGGCCAGTTTTATGGAAGTTACTTTTATATTTTTCTTCATATTTTCAAATTTTTACTTTTAAATCTGTTTCTTCAACTCTAGCGTTCCTTCATAGTCACAATCTTTTTACTGTGAAAATTTGTCTTCTTTTAATATATTTTACACTATATTATAAATAAATATAAAATGTATACTACATTGGGTGTTCTAATAATAATAATAATAATAATATTATTATTATTATTATTATTATTATTATTATTTTTAAAAAAGCATAGAAAATTTGAAGTTTAAATGAGGAACTCTTTATTTACAAGTCTGAAATCAAAACGGCAATAAATTTTTTTAAAAATTTCAAAAAGGCAACTCAACTAATTATGAAATTAACAGGGCATTAATTATAACGGTATCTAAATAAAATTTTCAAAAATGTGGCGCAAAATTTGATGAGCCTTAAAAGGCGCAACAACTTTTAGCCTTGTAAGGCTCAGTTGTCATGAGCCTTACAAGGCTCAGTTGTCAGCGCCTTGCATGTGGTTTTTGTTTTAGAAAAGAAATATCGTTTCATTCTCTTGTTTGTCAATTAGTTATTCTTTTTTTTTCATTTTATTTTCTTGGGTTAAAACTTGGACATTGTAATCTAATTGAGTTATTCTCTGGTACTACTTTCACATAATTTAATGTAGCTAAATTAAAATACTATCTCTTAAAAAAATATAAAACAAAAA</genome_strand>
        <mrna_strand>AGCAGGAAAACGAACAAAGGCAAGAGAACGGCGATGGCGTTGAACAACGGTTTGCGTTCATGTGCATCCCTTATCTCCAAAACTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAGAGAGAGTTCCACTCAACAGGCGTCAAGAGAATGGGAGGTCATGGACATGACGAACCTTTTTACATTCACGCAAAACACATGTACAACTTGGACAGGATGTCAAACCAGAAGCTGAAGATGACTCTTGGTGTCTGGTCTGCAGTCGCCATTGGTGTTATAGTCCCAGTTTATGCTGTCGTCTTCCAGCAAAAGAAAACTGCTTCTGGCTAGATCATCATGCTATTACGTCTCCACCACAATAATGCTGCCCTTGGAGCTTCCATGTATGAAGATGAACCTATTGAATTAGAGAGCATTAAATAGCTTTCAGTTTTGACTTAGCTTTACCCTGGTGGTTGCTTTTCTTGTTTCTGTTTTGGCACAACATTGGTATGCCTGGTTCATTAATAATATTTTCTTAACTGAAAACCATATTGGTTGAACATGTGTCTGATTTAATATCCATTTTCTGACTGGCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAA..................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E229169" ref_strand="-" ref_description="SGN-E229169 [cLEL-29-J14](-)">
      <seq>tttttttttttttttttgaagaacattctctttgaattgataggagtaattgccagtcagaaaatggatattaaatcagacacatgttcaaccaatatggttttcagttaagaaaatattattaatgaaccaggcataccaatgttgtgccaaaacagaaacaagaaaagcaaccaccagggtaaagctaagtcaaaactgaaagctatttaatgctctctaattcaataggttcatcttcatacatggaagctccaagggcagcattattgtggtggagacgtaatagcatggatgatctagccagaagcagttttcttttgctggaagacgacagcataaactgggactataacaccaatggcgactgcagaccagacaccaagagtcatcttca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0132E21.2" temp_strand="+" temp_description="C06SLm0132E21.2  AC211087.2 htgs_phase:3 submitted_to_sgn_as:C06SLm0132E21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="82532" stop="109660"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108024" g_stop="108040" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="17" r_length="17" r_score="0.824"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108041" i_stop="108981" i_length="941">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108982" g_stop="109360" g_length="379"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="397" r_length="380" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0132E21.2" gen_strand="+" ref_id="SGN-E229169" ref_strand="-">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>396</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0132E21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E229169" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="108024" e_stop="108040"/>
          <exon e_start="108982" e_stop="109360"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTTTTATATTTTTTTAAGAGATAGTATTTTAATTTAGCTACATTAAATTATGTGAAAGTAGTACCAGAGAATAACTCAATTAGATTACAATGTCCAAGTTTTAACCCAAGAAAATAAAATGAAAAAAAAAGAATAACTAATTGACAAACAAGAGAATGAAACGATATTTCTTTTCTAAAACAAAAACCACATGCAAGGCGCTGACAACTGAGCCTTGTAAGGCTCATGACAACTGAGCCTTACAAGGCTAAAAGTTGTTGCGCCTTTTAAGGCTCATCAAATTTTGCGCCACATTTTTGAAAATTTTATTTAGATACCGTTATAATTAATGCCCTGTTAATTTCATAATTAGTTGAGTTGCCTTTTTGAAATTTTTAAAAAAATTTATTGCCGTTTTGATTTCAGACTTGTAAATAAAGAGTTCCTCATTTAAACTTCAAATTTTCTATGCTTTTTTAAAAATAATAATAATAATAATAATAATAATAATAATATTATTATTATTATTATTATTAGAACACCCAATGTAGTATACATTTTATATTTATTTATAATATAGTGTAAAATATATTAAAAGAAGACAAATTTTCACAGTAAAAAGATTGTGACTATGAAGGAACGCTAGAGTTGAAGAAACAGATTTAAAAGTAAAAATTTGAAAATATGAAGAAAAATATAAAAGTAACTTCCATAAAACTGGCCTAGGATTCTCTTACATGAACTTATGCAATTCTTCAAACAGTGATCAGAGTTTAAGATATGGAAACTTCCAATTGATTATATACTCATTTTTTGAACCGTCGATTATGGATTCAGAAAGAAACATTTTATGTAACATTTGTAAAACCTTTTCCTTTTATTTTAGTTTGCCCAAATACTAATATACTACACCAATTTTTGTTGGCTGGGTACGTGTGCTATATATCAGGCATATCATAGAGATTTTACCCCAAAAGGAAGAACATTCTCTTTGAATTGATAGGAGTAATTGCCAGTCAGAAAATGGATATTAAATCAGACACATGTTCAACCAATATGGTTTTCAGTTAAGAAAATATTATTAATGAACCAGGCATACCAATGTTGTGCCAAAACAGAAACAAGAAAAGCAACCACCAGGGTAAAGCTAAGTCAAAACTGAAAGCTATTTAATGCTCTCTAATTCAATAGGTTCATCTTCATACATGGAAGCTCCAAGGGCAGCATTATTGTGGTGGAGACGTAATAGCAT-GATGATCTAGCCAGAAGCAGTTTTCTTTTGCTGGAAGACGACAGCATAAACTGGGACTATAACACCAATGGCGACTGCAGACCAGACACCAAGAGTCATCTTCA</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTTT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAACATTCTCTTTGAATTGATAGGAGTAATTGCCAGTCAGAAAATGGATATTAAATCAGACACATGTTCAACCAATATGGTTTTCAGTTAAGAAAATATTATTAATGAACCAGGCATACCAATGTTGTGCCAAAACAGAAACAAGAAAAGCAACCACCAGGGTAAAGCTAAGTCAAAACTGAAAGCTATTTAATGCTCTCTAATTCAATAGGTTCATCTTCATACATGGAAGCTCCAAGGGCAGCATTATTGTGGTGGAGACGTAATAGCATGGATGATCTAGCCAGAAGCAGTTTTCTTTTGCTGGAAGACGACAGCATAAACTGGGACTATAACACCAATGGCGACTGCAGACCAGACACCAAGAGTCATCTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E228689" ref_strand="-" ref_description="SGN-E228689 [cLEL-29-J14](-)">
      <seq>tttttttttttttttttgaagaacattctctttgaattgataggagtaattgccagtcagaaaatggatattaaatcagacacatgttcaaccaatatggttttcagttaagaaaatattattaatgaaccaggcataccaatgttgtgccaaaacagaaacaagaaaagcaaccaccagggtaaagctaagtcaaaactgaaagctatttaatgctctctaattcaataggttcatcttcatacatggaagctccaagggcagcattattgtggtggagacgtaatagcatgatgatctagccagaagcagttttcttttgctggaagacgacagcataaactgggactataaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0132E21.2" temp_strand="+" temp_description="C06SLm0132E21.2  AC211087.2 htgs_phase:3 submitted_to_sgn_as:C06SLm0132E21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="82532" stop="109620"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108024" g_stop="108040" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="17" r_length="17" r_score="0.824"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108041" i_stop="108981" i_length="941">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108982" g_stop="109320" g_length="339"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="356" r_length="339" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0132E21.2" gen_strand="+" ref_id="SGN-E228689" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>356</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0132E21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E228689" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="108024" e_stop="108040"/>
          <exon e_start="108982" e_stop="109320"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTTTTATATTTTTTTAAGAGATAGTATTTTAATTTAGCTACATTAAATTATGTGAAAGTAGTACCAGAGAATAACTCAATTAGATTACAATGTCCAAGTTTTAACCCAAGAAAATAAAATGAAAAAAAAAGAATAACTAATTGACAAACAAGAGAATGAAACGATATTTCTTTTCTAAAACAAAAACCACATGCAAGGCGCTGACAACTGAGCCTTGTAAGGCTCATGACAACTGAGCCTTACAAGGCTAAAAGTTGTTGCGCCTTTTAAGGCTCATCAAATTTTGCGCCACATTTTTGAAAATTTTATTTAGATACCGTTATAATTAATGCCCTGTTAATTTCATAATTAGTTGAGTTGCCTTTTTGAAATTTTTAAAAAAATTTATTGCCGTTTTGATTTCAGACTTGTAAATAAAGAGTTCCTCATTTAAACTTCAAATTTTCTATGCTTTTTTAAAAATAATAATAATAATAATAATAATAATAATAATATTATTATTATTATTATTATTAGAACACCCAATGTAGTATACATTTTATATTTATTTATAATATAGTGTAAAATATATTAAAAGAAGACAAATTTTCACAGTAAAAAGATTGTGACTATGAAGGAACGCTAGAGTTGAAGAAACAGATTTAAAAGTAAAAATTTGAAAATATGAAGAAAAATATAAAAGTAACTTCCATAAAACTGGCCTAGGATTCTCTTACATGAACTTATGCAATTCTTCAAACAGTGATCAGAGTTTAAGATATGGAAACTTCCAATTGATTATATACTCATTTTTTGAACCGTCGATTATGGATTCAGAAAGAAACATTTTATGTAACATTTGTAAAACCTTTTCCTTTTATTTTAGTTTGCCCAAATACTAATATACTACACCAATTTTTGTTGGCTGGGTACGTGTGCTATATATCAGGCATATCATAGAGATTTTACCCCAAAAGGAAGAACATTCTCTTTGAATTGATAGGAGTAATTGCCAGTCAGAAAATGGATATTAAATCAGACACATGTTCAACCAATATGGTTTTCAGTTAAGAAAATATTATTAATGAACCAGGCATACCAATGTTGTGCCAAAACAGAAACAAGAAAAGCAACCACCAGGGTAAAGCTAAGTCAAAACTGAAAGCTATTTAATGCTCTCTAATTCAATAGGTTCATCTTCATACATGGAAGCTCCAAGGGCAGCATTATTGTGGTGGAGACGTAATAGCATGATGATCTAGCCAGAAGCAGTTTTCTTTTGCTGGAAGACGACAGCATAAACTGGGACTATAACA</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTTT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAACATTCTCTTTGAATTGATAGGAGTAATTGCCAGTCAGAAAATGGATATTAAATCAGACACATGTTCAACCAATATGGTTTTCAGTTAAGAAAATATTATTAATGAACCAGGCATACCAATGTTGTGCCAAAACAGAAACAAGAAAAGCAACCACCAGGGTAAAGCTAAGTCAAAACTGAAAGCTATTTAATGCTCTCTAATTCAATAGGTTCATCTTCATACATGGAAGCTCCAAGGGCAGCATTATTGTGGTGGAGACGTAATAGCATGATGATCTAGCCAGAAGCAGTTTTCTTTTGCTGGAAGACGACAGCATAAACTGGGACTATAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E736384" ref_strand="+" ref_description="SGN-E736384 [LC05CD05]">
      <seq>cgcttggacaggatgtcaaaccagaagctgaagatgactcttggtgtctggtctgcagtcgccattggtgttatagtcccagtttatgctgtcgtcttccagcaaaagaaaactgcttctggctagatcatcatgctattacgtctccaccacaataatgctgcccttggagcttccatgtatgaagatgaacctattgaattagagagcattaaatagctttcagttttgacttagctttaccctggtggttgcttttcttgtttctgttttggcacaacattggtatgcctggttcattaataatattttcttaactgaaaaccatattggttgaaaaaaaaaaaaaaaaaaactctgggggggggccggggccccttttccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0132E21.2" temp_strand="-" temp_description="C06SLm0132E21.2  AC211087.2 htgs_phase:3 submitted_to_sgn_as:C06SLm0132E21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="109686" stop="82524"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109388" g_stop="109046" g_length="343"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="343" r_length="343" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109045" i_stop="108758" i_length="288">
            <donor d_prob="0.000" d_score="0.92"/>
            <acceptor a_prob="0.335" a_score="0.44"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108757" g_stop="108715" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="385" r_length="42" r_score="0.442"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0132E21.2" gen_strand="-" ref_id="SGN-E736384" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>386</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0132E21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E736384" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109388" e_stop="109046"/>
          <exon e_start="108757" e_stop="108715"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTTGGACAGGATGTCAAACCAGAAGCTGAAGATGACTCTTGGTGTCTGGTCTGCAGTCGCCATTGGTGTTATAGTCCCAGTTTATGCTGTCGTCTTCCAGCAAAAGAAAACTGCTTCTGGCTAGATCATCATGCTATTACGTCTCCACCACAATAATGCTGCCCTTGGAGCTTCCATGTATGAAGATGAACCTATTGAATTAGAGAGCATTAAATAGCTTTCAGTTTTGACTTAGCTTTACCCTGGTGGTTGCTTTTCTTGTTTCTGTTTTGGCACAACATTGGTATGCCTGGTTCATTAATAATATTTTCTTAACTGAAAACCATATTGGTTGAACATGTGTCTGATTTAATATCCATTTTCTGACTGGCAATTACTCCTATCAATTCAAAGAGAATGTTCTTCCTTTTGGGGTAAAATCTCTATGATATGCCTGATATATAGCACACGTACCCAGCCAACAAAAATTGGTGTAGTATATTAGTATTTGGGCAAACTAAAATAAAAGGAAAAGGTTTTACAAATGTTACATAAAATGTTTCTTTCTGAATCCATAATCGACGGTTCAAAAAATGAGTATATAATCAATTGGAAGTTTCCATATCTTAAACTCTGATCACTGTTTGAAGAATTGCATAAGTTCATGTAAGAGAATCCTAGGCCAGTTTTATG</genome_strand>
        <mrna_strand>CGCTTGGACAGGATGTCAAACCAGAAGCTGAAGATGACTCTTGGTGTCTGGTCTGCAGTCGCCATTGGTGTTATAGTCCCAGTTTATGCTGTCGTCTTCCAGCAAAAGAAAACTGCTTCTGGCTAGATCATCATGCTATTACGTCTCCACCACAATAATGCTGCCCTTGGAGCTTCCATGTATGAAGATGAACCTATTGAATTAGAGAGCATTAAATAGCTTTCAGTTTTGACTTAGCTTTACCCTGGTGGTTGCTTTTCTTGTTTCTGTTTTGGCACAACATTGGTATGCCTGGTTCATTAATAATATTTTCTTAACTGAAAACCATATTGGTTGAAAAAAA................................................................................................................................................................................................................................................................................................AAAAAAAAAAAACTCTG-GGGGGGGGCCGGGGCCCCTTTTCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E693138" ref_strand="+" ref_description="SGN-E693138 [LH_Ea10I16]">
      <seq>ttactccgagcgtccatagcaggaaaacgaagaaaggcaagagaacggcgatggcgttgaacaacggcttgcgttcatgtgcatccattatctccaaaactgtgaagagagagttccactcaacaggcgtcaagagaatgggaggtcatggacatgacgaacctttttaccttcatgcaaaacacatgtacaacttggacaggatgtcaaaccagaagctgaagatgactcttggtgtctggtctgcagtcgccattggtgttatagtcccagtttatgctgtcgtcttccagcaaaagaaaactgcttctggctagatcatcatgctattacgtctccaccacaataatgctgcccttggagcttccatgtatgaagatgaacctattgaattagagagcattaaatagctttcagttttgacttagctttaccctggtggttgcttttcttgtttctgttttggcacaacattggtatgcctggttcattaataatattttcttaactgaaaaccatattggttgaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0132E21.2" temp_strand="-" temp_description="C06SLm0132E21.2  AC211087.2 htgs_phase:3 submitted_to_sgn_as:C06SLm0132E21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="112666" stop="82532"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112367" g_stop="112266" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="102" r_length="102" r_score="0.961"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112265" i_stop="109478" i_length="2788">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109477" g_stop="109048" g_length="430"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="532" r_length="430" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="109047" i_stop="108758" i_length="290">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.335" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="108757" g_stop="108747" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="533" r_stop="543" r_length="11" r_score="0.455"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0132E21.2" gen_strand="-" ref_id="SGN-E693138" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>543</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0132E21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E693138" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112367" e_stop="112266"/>
          <exon e_start="109477" e_stop="109048"/>
          <exon e_start="108757" e_stop="108747"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACTCCGAGCGTCCATAGCAGGAAAACGAACAAAGGCAAGAGAACGGCGATGGCGTTGAACAACGGTTTGCGTTCATGTGCATCCCTTATCTCCAAAACTGGTATTCTCATCTCGTAGAACTTATTTTTTCTATTATCATTTGTTCATTTGGTTTTTTTTTAAAACTGATTTATGATTATTGGAATGATATGAGTCGATTGATACAGAGCTGATCGATACTTACTTTTTAAAAAAAAATTGTTGTTGATTTATTGTTAATACTGAATGTTAAGCTGAAAATATGAACAAGAGAAGTCAATTTAGATTTCCGCTGCTGATTTAGGTATCGGTTTTTTAGATCTACCATTTTCTGGGGTATGCGCAATTGGCATATTTTTGTGGATCTGTTTGATGAAAAGTCAAATTAGATTTCCGCTGCTGATTTAGGTATTGCTTTTTCAGATCTACCCATTTTCTGGGGTATGCGCAATTGGCGTATTTTTGTGGATCTGTTTGATTTATAAGAACATAGGTATACATTTGTGATTATTCATATGTTATAGATATATCAATCTAATAGTAGGATTTAGTTCAATGTTCTTAGGAACGTCCGCCCCTTCTTGTCCATTCTTTGTTCATGTCTATCTGTTAGTTATTGTCGTTACCTTTACATAAAGTATGTGTCTTTCATGAGTTTTTGTAAAGCTTGGTTAGAATTATGAGATTTTGGAGTGCATCTAGTCTAAAATAGAATCTCAACTTTGTAATTAAGGACAAAAGATTGCATATTGGGATGAAATGGTCCTGGATATGGTGGTTCAGATAGTTGATTCATTGATATTGGGAGGCAGGATAGGTTGGGATTGTCATCCCTCAAACCATCCTTCAAATAAATGAGACTATTGTTACCAATTTATAGCAATTCTGTGCTTCTGGTCTTGTGGCGCATAGAGAGATGATACTTCACTGTTAATGTTGTGTGTTCCTCCTGTATGAATTATGATGCAAGACTGCTGGTTTCACAGTGCTGCAATGAGCCCTGTTCTCTCTAAAGTAATACGTTAGACTAAAATATGAGTAGAAACATCTAAAGATCATGACTTCTATAATAGAACCAAATAATAATTTCAGGTGGGCTATACGTACAGTATTTAGATTTGAGCATGAGGTCATATCTATCCATGTTATGCACAGTGGCTAGTTGTTGATATGTGGATAAATCAGCTATTTATGTAAGCCCCCTCTGTGAACTTGTGTAAAAGTTGGCAACAAGTAACATTAAGGATATTAAACAAGGTGCTCCATGTGAGTTTTTACCCTTAATAGTTCCTACTTTTTGGCTCATTGGCTGCTATACAGCACATATGCGCCTCAATATAAGAAGCTCTCTTATAATCTCCTGTTTTAAGTTTCATGCTTAATACAAGGGAATTTTATTCTCTTTTTTCTCTGTAACAACCGCTACTTCCATCTTATCCAAAATATCTACTTCTGATAGCTCTAGCTCTGGTCTCTTTGAGGTGATTTTATGTTCTTTATTGGCAAGGACAAAAGTACAATTATTATCATTGACATTCCAAGTTGAGCCCTGGTACATATAACTATTGTTGTTTTCAGCTTGCATGGAGCTACTTCCAAGATAAGAGGTTTGATGTAATTTTGGTCTAGAGTAGTCCATAAGGCTGGCTCTGGATGCTAGAACGGTGTATATATCTTATGGTGTCTTGTTTGGCCCACATGAATACCTTTTCGTTTATTTGCTTCTAAAACTTTTAAAGAAGGTTCATCAATATTTTGCATCAATCTGACCCTCAGGGGTTTGGTTTAGCGCTTTGAAAATATAACACGTGATGTCTGGGTTGGGCGCACGTCACCAGTTCAAACCCTTCCGCTAGCAAGAGGTATTTATGTGGGAGCAGGGTACTCCAAGTTCAAACTTGTGAGCCAGTTGGAGTTGGTCTAGCGAACCCACAGACCATTTCTCAATTATAAAAAAAAATGCATTAGTCTGATGCAAACTTGTCCAAAAAAGACTAAAAACGGCAAAATTCTCCCCATCCGTTGGAGCAAAATCTCAGATACTCTTTTGGTATTTGAACCTGCACCTTCTGAAATATGCTTGGCATTATCAAGTTGTTCCATCTCTTAAGAGCTTGTTGAGAAAATATTTTCACTTTATAGGTTTACTCATCCTGATGACTATTATCAACCATAAATCACAGTACTAGCCTAGGCCCTGCATTATGAACCTGGATGCATGAAATAGTCAGAATAGTTTGGTCGATCTTCTGAGCATTGTTCTTTTTGTGAAACATGTGATTATCAAAAAAAAATAAGAATGATAGTGCTATCTGCTGGAAATGCATTTGAGGGACATATCTTTAGGTCTATGTGAAAATTTTATAAATGCTTCAATTCTATGAATATACTGATGTCAAAGAGGGAGAGCGATGGATAGTGGGTTTTATCAATTCAAATCATTAACTCAAAAATTAATTAGTCAACCTTCTAATAATTTGAGGAACCCTCCCTGGTAGCTCTCCCTCCTCCTTTGTCGGACAAGCATACTTCCATCAGTTTGACAATCTTTTCATTGGAACAGTGTGGCAATTGAAACGTGTTTTTCTACGGCCTGCTTGAATGACTTCGAATTATTTATTATGCCAACTTCTTTCTTTATGCACAAGTTCAAACGTCTGTCTTAACCGTTACATTTCAAACATTCTTTGATACTTGTTTAGTTAATTATACATGTTTTGAAACTTCCATTTCTCTCATATTTCATTTCTAATTGTCTTTCATCTTACCGTTTCTTTATGAAAAGTTTATTTCAATCAAATTTGGATGCTGTTGTTCATGCTTTTTATAAGTCTGACCTTACTGATAATTGATATTTATTGTTTGGTCAGTGAAGAGAGAGTTCCACTCAACAGGCGTCAAGAGAATGGGAGGTCATGGACATGACGAACCTTTTTACATTCACGCAAAACACATGTACAACTTGGACAGGATGTCAAACCAGAAGCTGAAGATGACTCTTGGTGTCTGGTCTGCAGTCGCCATTGGTGTTATAGTCCCAGTTTATGCTGTCGTCTTCCAGCAAAAGAAAACTGCTTCTGGCTAGATCATCATGCTATTACGTCTCCACCACAATAATGCTGCCCTTGGAGCTTCCATGTATGAAGATGAACCTATTGAATTAGAGAGCATTAAATAGCTTTCAGTTTTGACTTAGCTTTACCCTGGTGGTTGCTTTTCTTGTTTCTGTTTTGGCACAACATTGGTATGCCTGGTTCATTAATAATATTTTCTTAACTGAAAACCATATTGGTTGAACATGTGTCTGATTTAATATCCATTTTCTGACTGGCAATTACTCCTATCAATTCAAAGAGAATGTTCTTCCTTTTGGGGTAAAATCTCTATGATATGCCTGATATATAGCACACGTACCCAGCCAACAAAAATTGGTGTAGTATATTAGTATTTGGGCAAACTAAAATAAAAGGAAAAGGTTTTACAAATGTTACATAAAATGTTTCTTTCTGAATCCATAATCGACGGTTCAAAAAATGAGTATATAATCAATTGGAAGTTTCCATATCTTAAACTCTGATCACTGTTTGAAGAATTGCATAAG</genome_strand>
        <mrna_strand>TTACTCCGAGCGTCCATAGCAGGAAAACGAAGAAAGGCAAGAGAACGGCGATGGCGTTGAACAACGGCTTGCGTTCATGTGCATCCATTATCTCCAAAACTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAGAGAGAGTTCCACTCAACAGGCGTCAAGAGAATGGGAGGTCATGGACATGACGAACCTTTTTACCTTCATGCAAAACACATGTACAACTTGGACAGGATGTCAAACCAGAAGCTGAAGATGACTCTTGGTGTCTGGTCTGCAGTCGCCATTGGTGTTATAGTCCCAGTTTATGCTGTCGTCTTCCAGCAAAAGAAAACTGCTTCTGGCTAGATCATCATGCTATTACGTCTCCACCACAATAATGCTGCCCTTGGAGCTTCCATGTATGAAGATGAACCTATTGAATTAGAGAGCATTAAATAGCTTTCAGTTTTGACTTAGCTTTACCCTGGTGGTTGCTTTTCTTGTTTCTGTTTTGGCACAACATTGGTATGCCTGGTTCATTAATAATATTTTCTTAACTGAAAACCATATTGGTTGAAAAA..................................................................................................................................................................................................................................................................................................AAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E229376" ref_strand="+" ref_description="SGN-E229376 [cLEL-4-I19](-)">
      <seq>tttttacattcacgcaaaacacatgtacaacttggacaggatgtcaaaccagaagctgaagatgactcttggtgtctggtctgcagtcgccattggtgttatagtcccagtttatgctgtcgtcttccagcaaaagaaaactgcttctggctagatcatcatgctattacgtctccaccacaataatgctgcccttggagcttccatgtatgaagatgaacctattgaattagagagcattaaatagctttcagttttgacttagctttaccctggtggttgcttttcttgtttctgttttggcacaacattggtatgcctggttcattaataatattttcttaactgaaaaccatattggttgaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0132E21.2" temp_strand="-" temp_description="C06SLm0132E21.2  AC211087.2 htgs_phase:3 submitted_to_sgn_as:C06SLm0132E21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="109716" stop="82532"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109416" g_stop="109051" g_length="366"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="366" r_length="366" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109050" i_stop="108890" i_length="161">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108889" g_stop="108874" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="382" r_length="16" r_score="0.750"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0132E21.2" gen_strand="-" ref_id="SGN-E229376" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>382</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0132E21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E229376" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109416" e_stop="109051"/>
          <exon e_start="108889" e_stop="108874"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTACATTCACGCAAAACACATGTACAACTTGGACAGGATGTCAAACCAGAAGCTGAAGATGACTCTTGGTGTCTGGTCTGCAGTCGCCATTGGTGTTATAGTCCCAGTTTATGCTGTCGTCTTCCAGCAAAAGAAAACTGCTTCTGGCTAGATCATCATGCTATTACGTCTCCACCACAATAATGCTGCCCTTGGAGCTTCCATGTATGAAGATGAACCTATTGAATTAGAGAGCATTAAATAGCTTTCAGTTTTGACTTAGCTTTACCCTGGTGGTTGCTTTTCTTGTTTCTGTTTTGGCACAACATTGGTATGCCTGGTTCATTAATAATATTTTCTTAACTGAAAACCATATTGGTTGAACATGTGTCTGATTTAATATCCATTTTCTGACTGGCAATTACTCCTATCAATTCAAAGAGAATGTTCTTCCTTTTGGGGTAAAATCTCTATGATATGCCTGATATATAGCACACGTACCCAGCCAACAAAAATTGGTGTAGTATATTAGTATTTGGGCAAACTAAAATAAAAGGAAAA</genome_strand>
        <mrna_strand>TTTTTACATTCACGCAAAACACATGTACAACTTGGACAGGATGTCAAACCAGAAGCTGAAGATGACTCTTGGTGTCTGGTCTGCAGTCGCCATTGGTGTTATAGTCCCAGTTTATGCTGTCGTCTTCCAGCAAAAGAAAACTGCTTCTGGCTAGATCATCATGCTATTACGTCTCCACCACAATAATGCTGCCCTTGGAGCTTCCATGTATGAAGATGAACCTATTGAATTAGAGAGCATTAAATAGCTTTCAGTTTTGACTTAGCTTTACCCTGGTGGTTGCTTTTCTTGTTTCTGTTTTGGCACAACATTGGTATGCCTGGTTCATTAATAATATTTTCTTAACTGAAAACCATATTGGTTGAA.................................................................................................................................................................AAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E711222" ref_strand="+" ref_description="SGN-E711222 [FB01BD10]">
      <seq>gtctcttagcaggaaaacgaacaaaggcaagagaacggcgatggcgttgaacaacggtttgcgttcatgtgcatcccttatctccaaaactgtgaagagagagttccactcaacaggcgtcaagagaatgggaggtcatggacatgacgaacctttttacattcacgcaaaacacatgtacaacttggacaggatgtcaaaccagaagctgaagatgactcttggtgtctggtctgcagtcgccattggtgttatagtcccagtttatgctgtcgtcttccagcaaaagaaaactgcttctggctagatcatcatgctattacgtctccaccacaataatgctgcccttggagcttccatgtatgaagatgaacctattgaattagagagcattaaatagctttcagttttgacttagctttaccctggtggttgcttttcttgtttctgttttggcacaacattggtatgcctggttcattaataatattttcttaactgaaaaccatattggttgaacatgtgtctgatttaatatccattttctgactggcaattactcctatcaattcaaagagaatgttcttctttttggaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0132E21.2" temp_strand="-" temp_description="C06SLm0132E21.2  AC211087.2 htgs_phase:3 submitted_to_sgn_as:C06SLm0132E21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="112656" stop="108675"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112356" g_stop="112266" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="92" r_length="92" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112265" i_stop="109478" i_length="2788">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109477" g_stop="108974" g_length="504"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="596" r_length="504" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="597" polyA_stop="610"/>
      <MATCH_line gen_id="C06SLm0132E21.2" gen_strand="-" ref_id="SGN-E711222" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>595</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0132E21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E711222" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112356" e_stop="112266"/>
          <exon e_start="109477" e_stop="108974"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTC-CATAGCAGGAAAACGAACAAAGGCAAGAGAACGGCGATGGCGTTGAACAACGGTTTGCGTTCATGTGCATCCCTTATCTCCAAAACTGGTATTCTCATCTCGTAGAACTTATTTTTTCTATTATCATTTGTTCATTTGGTTTTTTTTTAAAACTGATTTATGATTATTGGAATGATATGAGTCGATTGATACAGAGCTGATCGATACTTACTTTTTAAAAAAAAATTGTTGTTGATTTATTGTTAATACTGAATGTTAAGCTGAAAATATGAACAAGAGAAGTCAATTTAGATTTCCGCTGCTGATTTAGGTATCGGTTTTTTAGATCTACCATTTTCTGGGGTATGCGCAATTGGCATATTTTTGTGGATCTGTTTGATGAAAAGTCAAATTAGATTTCCGCTGCTGATTTAGGTATTGCTTTTTCAGATCTACCCATTTTCTGGGGTATGCGCAATTGGCGTATTTTTGTGGATCTGTTTGATTTATAAGAACATAGGTATACATTTGTGATTATTCATATGTTATAGATATATCAATCTAATAGTAGGATTTAGTTCAATGTTCTTAGGAACGTCCGCCCCTTCTTGTCCATTCTTTGTTCATGTCTATCTGTTAGTTATTGTCGTTACCTTTACATAAAGTATGTGTCTTTCATGAGTTTTTGTAAAGCTTGGTTAGAATTATGAGATTTTGGAGTGCATCTAGTCTAAAATAGAATCTCAACTTTGTAATTAAGGACAAAAGATTGCATATTGGGATGAAATGGTCCTGGATATGGTGGTTCAGATAGTTGATTCATTGATATTGGGAGGCAGGATAGGTTGGGATTGTCATCCCTCAAACCATCCTTCAAATAAATGAGACTATTGTTACCAATTTATAGCAATTCTGTGCTTCTGGTCTTGTGGCGCATAGAGAGATGATACTTCACTGTTAATGTTGTGTGTTCCTCCTGTATGAATTATGATGCAAGACTGCTGGTTTCACAGTGCTGCAATGAGCCCTGTTCTCTCTAAAGTAATACGTTAGACTAAAATATGAGTAGAAACATCTAAAGATCATGACTTCTATAATAGAACCAAATAATAATTTCAGGTGGGCTATACGTACAGTATTTAGATTTGAGCATGAGGTCATATCTATCCATGTTATGCACAGTGGCTAGTTGTTGATATGTGGATAAATCAGCTATTTATGTAAGCCCCCTCTGTGAACTTGTGTAAAAGTTGGCAACAAGTAACATTAAGGATATTAAACAAGGTGCTCCATGTGAGTTTTTACCCTTAATAGTTCCTACTTTTTGGCTCATTGGCTGCTATACAGCACATATGCGCCTCAATATAAGAAGCTCTCTTATAATCTCCTGTTTTAAGTTTCATGCTTAATACAAGGGAATTTTATTCTCTTTTTTCTCTGTAACAACCGCTACTTCCATCTTATCCAAAATATCTACTTCTGATAGCTCTAGCTCTGGTCTCTTTGAGGTGATTTTATGTTCTTTATTGGCAAGGACAAAAGTACAATTATTATCATTGACATTCCAAGTTGAGCCCTGGTACATATAACTATTGTTGTTTTCAGCTTGCATGGAGCTACTTCCAAGATAAGAGGTTTGATGTAATTTTGGTCTAGAGTAGTCCATAAGGCTGGCTCTGGATGCTAGAACGGTGTATATATCTTATGGTGTCTTGTTTGGCCCACATGAATACCTTTTCGTTTATTTGCTTCTAAAACTTTTAAAGAAGGTTCATCAATATTTTGCATCAATCTGACCCTCAGGGGTTTGGTTTAGCGCTTTGAAAATATAACACGTGATGTCTGGGTTGGGCGCACGTCACCAGTTCAAACCCTTCCGCTAGCAAGAGGTATTTATGTGGGAGCAGGGTACTCCAAGTTCAAACTTGTGAGCCAGTTGGAGTTGGTCTAGCGAACCCACAGACCATTTCTCAATTATAAAAAAAAATGCATTAGTCTGATGCAAACTTGTCCAAAAAAGACTAAAAACGGCAAAATTCTCCCCATCCGTTGGAGCAAAATCTCAGATACTCTTTTGGTATTTGAACCTGCACCTTCTGAAATATGCTTGGCATTATCAAGTTGTTCCATCTCTTAAGAGCTTGTTGAGAAAATATTTTCACTTTATAGGTTTACTCATCCTGATGACTATTATCAACCATAAATCACAGTACTAGCCTAGGCCCTGCATTATGAACCTGGATGCATGAAATAGTCAGAATAGTTTGGTCGATCTTCTGAGCATTGTTCTTTTTGTGAAACATGTGATTATCAAAAAAAAATAAGAATGATAGTGCTATCTGCTGGAAATGCATTTGAGGGACATATCTTTAGGTCTATGTGAAAATTTTATAAATGCTTCAATTCTATGAATATACTGATGTCAAAGAGGGAGAGCGATGGATAGTGGGTTTTATCAATTCAAATCATTAACTCAAAAATTAATTAGTCAACCTTCTAATAATTTGAGGAACCCTCCCTGGTAGCTCTCCCTCCTCCTTTGTCGGACAAGCATACTTCCATCAGTTTGACAATCTTTTCATTGGAACAGTGTGGCAATTGAAACGTGTTTTTCTACGGCCTGCTTGAATGACTTCGAATTATTTATTATGCCAACTTCTTTCTTTATGCACAAGTTCAAACGTCTGTCTTAACCGTTACATTTCAAACATTCTTTGATACTTGTTTAGTTAATTATACATGTTTTGAAACTTCCATTTCTCTCATATTTCATTTCTAATTGTCTTTCATCTTACCGTTTCTTTATGAAAAGTTTATTTCAATCAAATTTGGATGCTGTTGTTCATGCTTTTTATAAGTCTGACCTTACTGATAATTGATATTTATTGTTTGGTCAGTGAAGAGAGAGTTCCACTCAACAGGCGTCAAGAGAATGGGAGGTCATGGACATGACGAACCTTTTTACATTCACGCAAAACACATGTACAACTTGGACAGGATGTCAAACCAGAAGCTGAAGATGACTCTTGGTGTCTGGTCTGCAGTCGCCATTGGTGTTATAGTCCCAGTTTATGCTGTCGTCTTCCAGCAAAAGAAAACTGCTTCTGGCTAGATCATCATGCTATTACGTCTCCACCACAATAATGCTGCCCTTGGAGCTTCCATGTATGAAGATGAACCTATTGAATTAGAGAGCATTAAATAGCTTTCAGTTTTGACTTAGCTTTACCCTGGTGGTTGCTTTTCTTGTTTCTGTTTTGGCACAACATTGGTATGCCTGGTTCATTAATAATATTTTCTTAACTGAAAACCATATTGGTTGAACATGTGTCTGATTTAATATCCATTTTCTGACTGGCAATTACTCCTATCAATTCAAAGAGAATGTTCTTCCTTTTGGG</genome_strand>
        <mrna_strand>GTCTCTTAGCAGGAAAACGAACAAAGGCAAGAGAACGGCGATGGCGTTGAACAACGGTTTGCGTTCATGTGCATCCCTTATCTCCAAAACTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAGAGAGAGTTCCACTCAACAGGCGTCAAGAGAATGGGAGGTCATGGACATGACGAACCTTTTTACATTCACGCAAAACACATGTACAACTTGGACAGGATGTCAAACCAGAAGCTGAAGATGACTCTTGGTGTCTGGTCTGCAGTCGCCATTGGTGTTATAGTCCCAGTTTATGCTGTCGTCTTCCAGCAAAAGAAAACTGCTTCTGGCTAGATCATCATGCTATTACGTCTCCACCACAATAATGCTGCCCTTGGAGCTTCCATGTATGAAGATGAACCTATTGAATTAGAGAGCATTAAATAGCTTTCAGTTTTGACTTAGCTTTACCCTGGTGGTTGCTTTTCTTGTTTCTGTTTTGGCACAACATTGGTATGCCTGGTTCATTAATAATATTTTCTTAACTGAAAACCATATTGGTTGAACATGTGTCTGATTTAATATCCATTTTCTGACTGGCAATTACTCCTATCAATTCAAAGAGAATGTTCTTCTTTTTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E349432" ref_strand="+" ref_description="SGN-E349432 [cTOS-1-B12]">
      <seq>ctttttacattcacgcaaaacacatgtacaacttggacaggatgtcaaaccagaagctgaagatgactcttggtgtctggtctgcagtcgccattggtgttatagtcccagtttatgctgtcgtcttccagcaaaagaaaactgcttctggctagatcatcatgctattacgtctccaccacaataatgctgcccttggagcttccatgtatgaagatgaacctattgaattagagagcattaaatagctttcagttttgacttagctttaccctggtggttgcttttcttgtttctgttttggcacaacattggtatgcctggttcattaataatattttcttaactgaaaaccatattggttgaacatgtgtctgatttaatatccattttctgactggcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0132E21.2" temp_strand="-" temp_description="C06SLm0132E21.2  AC211087.2 htgs_phase:3 submitted_to_sgn_as:C06SLm0132E21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="109717" stop="108714"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109417" g_stop="109015" g_length="403"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="403" r_length="403" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0132E21.2" gen_strand="-" ref_id="SGN-E349432" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>403</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0132E21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E349432" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109417" e_stop="109015"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTTACATTCACGCAAAACACATGTACAACTTGGACAGGATGTCAAACCAGAAGCTGAAGATGACTCTTGGTGTCTGGTCTGCAGTCGCCATTGGTGTTATAGTCCCAGTTTATGCTGTCGTCTTCCAGCAAAAGAAAACTGCTTCTGGCTAGATCATCATGCTATTACGTCTCCACCACAATAATGCTGCCCTTGGAGCTTCCATGTATGAAGATGAACCTATTGAATTAGAGAGCATTAAATAGCTTTCAGTTTTGACTTAGCTTTACCCTGGTGGTTGCTTTTCTTGTTTCTGTTTTGGCACAACATTGGTATGCCTGGTTCATTAATAATATTTTCTTAACTGAAAACCATATTGGTTGAACATGTGTCTGATTTAATATCCATTTTCTGACTGGCA</genome_strand>
        <mrna_strand>CTTTTTACATTCACGCAAAACACATGTACAACTTGGACAGGATGTCAAACCAGAAGCTGAAGATGACTCTTGGTGTCTGGTCTGCAGTCGCCATTGGTGTTATAGTCCCAGTTTATGCTGTCGTCTTCCAGCAAAAGAAAACTGCTTCTGGCTAGATCATCATGCTATTACGTCTCCACCACAATAATGCTGCCCTTGGAGCTTCCATGTATGAAGATGAACCTATTGAATTAGAGAGCATTAAATAGCTTTCAGTTTTGACTTAGCTTTACCCTGGTGGTTGCTTTTCTTGTTTCTGTTTTGGCACAACATTGGTATGCCTGGTTCATTAATAATATTTTCTTAACTGAAAACCATATTGGTTGAACATGTGTCTGATTTAATATCCATTTTCTGACTGGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E288150" ref_strand="+" ref_description="SGN-E288150 [cLES-7-O12]">
      <seq>aactactccgagcgtgcatatcatgaaaacgaacaaaggcaagagaacggcgatggcgtggaacaacgggttgcgttcatgtgcatcccttatctccaaaactgtgaagagagagttccactcaacaggcgtcaagagaatgggaggtcatggacatgacgaacctttttacattcacgcaaaacacatgtacaacttggacaggatgtcaaaccataagctgaagatgactcttggtgtctggtctgcagtcgccattggtgttatagtcccagtttatgctggcgtcttccagcgaaagaaaactgcttctggctagatcatcatgctattacgtctacaccacaataatgctgcccttggagcttccatgtgtgaagatgaacctattgaattagagagcattaaatagctttcagttttgacttagctttaccctggtggttgcttttcttggttctgttttggcacaacattggtatgcctgggtcattaataatattttcttaactgaaaaccatattggttgaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0132E21.2" temp_strand="-" temp_description="C06SLm0132E21.2  AC211087.2 htgs_phase:3 submitted_to_sgn_as:C06SLm0132E21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="112669" stop="108749"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112369" g_stop="112266" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="104" r_length="104" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112265" i_stop="109478" i_length="2788">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109477" g_stop="109044" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="538" r_length="434" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0132E21.2" gen_strand="-" ref_id="SGN-E288150" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>538</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0132E21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E288150" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112369" e_stop="112266"/>
          <exon e_start="109477" e_stop="109044"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTACTCCGAGCGTCCATAGCAGGAAAACGAACAAAGGCAAGAGAACGGCGATGGCGTTGAACAACGGTTTGCGTTCATGTGCATCCCTTATCTCCAAAACTGGTATTCTCATCTCGTAGAACTTATTTTTTCTATTATCATTTGTTCATTTGGTTTTTTTTTAAAACTGATTTATGATTATTGGAATGATATGAGTCGATTGATACAGAGCTGATCGATACTTACTTTTTAAAAAAAAATTGTTGTTGATTTATTGTTAATACTGAATGTTAAGCTGAAAATATGAACAAGAGAAGTCAATTTAGATTTCCGCTGCTGATTTAGGTATCGGTTTTTTAGATCTACCATTTTCTGGGGTATGCGCAATTGGCATATTTTTGTGGATCTGTTTGATGAAAAGTCAAATTAGATTTCCGCTGCTGATTTAGGTATTGCTTTTTCAGATCTACCCATTTTCTGGGGTATGCGCAATTGGCGTATTTTTGTGGATCTGTTTGATTTATAAGAACATAGGTATACATTTGTGATTATTCATATGTTATAGATATATCAATCTAATAGTAGGATTTAGTTCAATGTTCTTAGGAACGTCCGCCCCTTCTTGTCCATTCTTTGTTCATGTCTATCTGTTAGTTATTGTCGTTACCTTTACATAAAGTATGTGTCTTTCATGAGTTTTTGTAAAGCTTGGTTAGAATTATGAGATTTTGGAGTGCATCTAGTCTAAAATAGAATCTCAACTTTGTAATTAAGGACAAAAGATTGCATATTGGGATGAAATGGTCCTGGATATGGTGGTTCAGATAGTTGATTCATTGATATTGGGAGGCAGGATAGGTTGGGATTGTCATCCCTCAAACCATCCTTCAAATAAATGAGACTATTGTTACCAATTTATAGCAATTCTGTGCTTCTGGTCTTGTGGCGCATAGAGAGATGATACTTCACTGTTAATGTTGTGTGTTCCTCCTGTATGAATTATGATGCAAGACTGCTGGTTTCACAGTGCTGCAATGAGCCCTGTTCTCTCTAAAGTAATACGTTAGACTAAAATATGAGTAGAAACATCTAAAGATCATGACTTCTATAATAGAACCAAATAATAATTTCAGGTGGGCTATACGTACAGTATTTAGATTTGAGCATGAGGTCATATCTATCCATGTTATGCACAGTGGCTAGTTGTTGATATGTGGATAAATCAGCTATTTATGTAAGCCCCCTCTGTGAACTTGTGTAAAAGTTGGCAACAAGTAACATTAAGGATATTAAACAAGGTGCTCCATGTGAGTTTTTACCCTTAATAGTTCCTACTTTTTGGCTCATTGGCTGCTATACAGCACATATGCGCCTCAATATAAGAAGCTCTCTTATAATCTCCTGTTTTAAGTTTCATGCTTAATACAAGGGAATTTTATTCTCTTTTTTCTCTGTAACAACCGCTACTTCCATCTTATCCAAAATATCTACTTCTGATAGCTCTAGCTCTGGTCTCTTTGAGGTGATTTTATGTTCTTTATTGGCAAGGACAAAAGTACAATTATTATCATTGACATTCCAAGTTGAGCCCTGGTACATATAACTATTGTTGTTTTCAGCTTGCATGGAGCTACTTCCAAGATAAGAGGTTTGATGTAATTTTGGTCTAGAGTAGTCCATAAGGCTGGCTCTGGATGCTAGAACGGTGTATATATCTTATGGTGTCTTGTTTGGCCCACATGAATACCTTTTCGTTTATTTGCTTCTAAAACTTTTAAAGAAGGTTCATCAATATTTTGCATCAATCTGACCCTCAGGGGTTTGGTTTAGCGCTTTGAAAATATAACACGTGATGTCTGGGTTGGGCGCACGTCACCAGTTCAAACCCTTCCGCTAGCAAGAGGTATTTATGTGGGAGCAGGGTACTCCAAGTTCAAACTTGTGAGCCAGTTGGAGTTGGTCTAGCGAACCCACAGACCATTTCTCAATTATAAAAAAAAATGCATTAGTCTGATGCAAACTTGTCCAAAAAAGACTAAAAACGGCAAAATTCTCCCCATCCGTTGGAGCAAAATCTCAGATACTCTTTTGGTATTTGAACCTGCACCTTCTGAAATATGCTTGGCATTATCAAGTTGTTCCATCTCTTAAGAGCTTGTTGAGAAAATATTTTCACTTTATAGGTTTACTCATCCTGATGACTATTATCAACCATAAATCACAGTACTAGCCTAGGCCCTGCATTATGAACCTGGATGCATGAAATAGTCAGAATAGTTTGGTCGATCTTCTGAGCATTGTTCTTTTTGTGAAACATGTGATTATCAAAAAAAAATAAGAATGATAGTGCTATCTGCTGGAAATGCATTTGAGGGACATATCTTTAGGTCTATGTGAAAATTTTATAAATGCTTCAATTCTATGAATATACTGATGTCAAAGAGGGAGAGCGATGGATAGTGGGTTTTATCAATTCAAATCATTAACTCAAAAATTAATTAGTCAACCTTCTAATAATTTGAGGAACCCTCCCTGGTAGCTCTCCCTCCTCCTTTGTCGGACAAGCATACTTCCATCAGTTTGACAATCTTTTCATTGGAACAGTGTGGCAATTGAAACGTGTTTTTCTACGGCCTGCTTGAATGACTTCGAATTATTTATTATGCCAACTTCTTTCTTTATGCACAAGTTCAAACGTCTGTCTTAACCGTTACATTTCAAACATTCTTTGATACTTGTTTAGTTAATTATACATGTTTTGAAACTTCCATTTCTCTCATATTTCATTTCTAATTGTCTTTCATCTTACCGTTTCTTTATGAAAAGTTTATTTCAATCAAATTTGGATGCTGTTGTTCATGCTTTTTATAAGTCTGACCTTACTGATAATTGATATTTATTGTTTGGTCAGTGAAGAGAGAGTTCCACTCAACAGGCGTCAAGAGAATGGGAGGTCATGGACATGACGAACCTTTTTACATTCACGCAAAACACATGTACAACTTGGACAGGATGTCAAACCAGAAGCTGAAGATGACTCTTGGTGTCTGGTCTGCAGTCGCCATTGGTGTTATAGTCCCAGTTTATGCTGTCGTCTTCCAGCAAAAGAAAACTGCTTCTGGCTAGATCATCATGCTATTACGTCTCCACCACAATAATGCTGCCCTTGGAGCTTCCATGTATGAAGATGAACCTATTGAATTAGAGAGCATTAAATAGCTTTCAGTTTTGACTTAGCTTTACCCTGGTGGTTGCTTTTCTTGTTTCTGTTTTGGCACAACATTGGTATGCCTGGTTCATTAATAATATTTTCTTAACTGAAAACCATATTGGTTGAACATGTGT</genome_strand>
        <mrna_strand>AACTACTCCGAGCGTGCATATCATGAAAACGAACAAAGGCAAGAGAACGGCGATGGCGTGGAACAACGGGTTGCGTTCATGTGCATCCCTTATCTCCAAAACTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAGAGAGAGTTCCACTCAACAGGCGTCAAGAGAATGGGAGGTCATGGACATGACGAACCTTTTTACATTCACGCAAAACACATGTACAACTTGGACAGGATGTCAAACCATAAGCTGAAGATGACTCTTGGTGTCTGGTCTGCAGTCGCCATTGGTGTTATAGTCCCAGTTTATGCTGGCGTCTTCCAGCGAAAGAAAACTGCTTCTGGCTAGATCATCATGCTATTACGTCTACACCACAATAATGCTGCCCTTGGAGCTTCCATGTGTGAAGATGAACCTATTGAATTAGAGAGCATTAAATAGCTTTCAGTTTTGACTTAGCTTTACCCTGGTGGTTGCTTTTCTTGGTTCTGTTTTGGCACAACATTGGTATGCCTGGGTCATTAATAATATTTTCTTAACTGAAAACCATATTGGTTGAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E724204" ref_strand="+" ref_description="SGN-E724204 [FC23BE12]">
      <seq>tttaaacttaaccctatcgaaactactccgagcgtccatagcaggaaaacgaacaaaggcaagagaacggcgatggcgttgaacaacggtttgcgttcatgtgcatcccttatctccaaaactgtgaagagagagttccactcaacaggcgtcaagagaatgggaggtcatggacatgacgaacctttttacattcacgcaaaacacatgtacaacttggacaggatgtcaaaccagaagctgaagatgactcttggtgtctggtctgcagtcgccattggtgttatagtcccagtttatgctgtcgtcttccagcaaaagaaaactgcttctggctagatcatcatgctattacgtctccaccacaataatgctgcccttggagcttccatgtatgaagatgaacctattgaattagagagcattaaatagctttcagttttgacttaactttaccctggtggttgcttttcttgtttctgttttggcacaacattggtatgcctggttcattaataatattttcttaactgaaaaccatattggttgaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0132E21.2" temp_strand="-" temp_description="C06SLm0132E21.2  AC211087.2 htgs_phase:3 submitted_to_sgn_as:C06SLm0132E21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="112689" stop="108749"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112389" g_stop="112266" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="124" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112265" i_stop="109478" i_length="2788">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109477" g_stop="109048" g_length="430"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="554" r_length="430" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0132E21.2" gen_strand="-" ref_id="SGN-E724204" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0132E21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E724204" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112389" e_stop="112266"/>
          <exon e_start="109477" e_stop="109048"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAAACTTAACCCTATCGAAACTACTCCGAGCGTCCATAGCAGGAAAACGAACAAAGGCAAGAGAACGGCGATGGCGTTGAACAACGGTTTGCGTTCATGTGCATCCCTTATCTCCAAAACTGGTATTCTCATCTCGTAGAACTTATTTTTTCTATTATCATTTGTTCATTTGGTTTTTTTTTAAAACTGATTTATGATTATTGGAATGATATGAGTCGATTGATACAGAGCTGATCGATACTTACTTTTTAAAAAAAAATTGTTGTTGATTTATTGTTAATACTGAATGTTAAGCTGAAAATATGAACAAGAGAAGTCAATTTAGATTTCCGCTGCTGATTTAGGTATCGGTTTTTTAGATCTACCATTTTCTGGGGTATGCGCAATTGGCATATTTTTGTGGATCTGTTTGATGAAAAGTCAAATTAGATTTCCGCTGCTGATTTAGGTATTGCTTTTTCAGATCTACCCATTTTCTGGGGTATGCGCAATTGGCGTATTTTTGTGGATCTGTTTGATTTATAAGAACATAGGTATACATTTGTGATTATTCATATGTTATAGATATATCAATCTAATAGTAGGATTTAGTTCAATGTTCTTAGGAACGTCCGCCCCTTCTTGTCCATTCTTTGTTCATGTCTATCTGTTAGTTATTGTCGTTACCTTTACATAAAGTATGTGTCTTTCATGAGTTTTTGTAAAGCTTGGTTAGAATTATGAGATTTTGGAGTGCATCTAGTCTAAAATAGAATCTCAACTTTGTAATTAAGGACAAAAGATTGCATATTGGGATGAAATGGTCCTGGATATGGTGGTTCAGATAGTTGATTCATTGATATTGGGAGGCAGGATAGGTTGGGATTGTCATCCCTCAAACCATCCTTCAAATAAATGAGACTATTGTTACCAATTTATAGCAATTCTGTGCTTCTGGTCTTGTGGCGCATAGAGAGATGATACTTCACTGTTAATGTTGTGTGTTCCTCCTGTATGAATTATGATGCAAGACTGCTGGTTTCACAGTGCTGCAATGAGCCCTGTTCTCTCTAAAGTAATACGTTAGACTAAAATATGAGTAGAAACATCTAAAGATCATGACTTCTATAATAGAACCAAATAATAATTTCAGGTGGGCTATACGTACAGTATTTAGATTTGAGCATGAGGTCATATCTATCCATGTTATGCACAGTGGCTAGTTGTTGATATGTGGATAAATCAGCTATTTATGTAAGCCCCCTCTGTGAACTTGTGTAAAAGTTGGCAACAAGTAACATTAAGGATATTAAACAAGGTGCTCCATGTGAGTTTTTACCCTTAATAGTTCCTACTTTTTGGCTCATTGGCTGCTATACAGCACATATGCGCCTCAATATAAGAAGCTCTCTTATAATCTCCTGTTTTAAGTTTCATGCTTAATACAAGGGAATTTTATTCTCTTTTTTCTCTGTAACAACCGCTACTTCCATCTTATCCAAAATATCTACTTCTGATAGCTCTAGCTCTGGTCTCTTTGAGGTGATTTTATGTTCTTTATTGGCAAGGACAAAAGTACAATTATTATCATTGACATTCCAAGTTGAGCCCTGGTACATATAACTATTGTTGTTTTCAGCTTGCATGGAGCTACTTCCAAGATAAGAGGTTTGATGTAATTTTGGTCTAGAGTAGTCCATAAGGCTGGCTCTGGATGCTAGAACGGTGTATATATCTTATGGTGTCTTGTTTGGCCCACATGAATACCTTTTCGTTTATTTGCTTCTAAAACTTTTAAAGAAGGTTCATCAATATTTTGCATCAATCTGACCCTCAGGGGTTTGGTTTAGCGCTTTGAAAATATAACACGTGATGTCTGGGTTGGGCGCACGTCACCAGTTCAAACCCTTCCGCTAGCAAGAGGTATTTATGTGGGAGCAGGGTACTCCAAGTTCAAACTTGTGAGCCAGTTGGAGTTGGTCTAGCGAACCCACAGACCATTTCTCAATTATAAAAAAAAATGCATTAGTCTGATGCAAACTTGTCCAAAAAAGACTAAAAACGGCAAAATTCTCCCCATCCGTTGGAGCAAAATCTCAGATACTCTTTTGGTATTTGAACCTGCACCTTCTGAAATATGCTTGGCATTATCAAGTTGTTCCATCTCTTAAGAGCTTGTTGAGAAAATATTTTCACTTTATAGGTTTACTCATCCTGATGACTATTATCAACCATAAATCACAGTACTAGCCTAGGCCCTGCATTATGAACCTGGATGCATGAAATAGTCAGAATAGTTTGGTCGATCTTCTGAGCATTGTTCTTTTTGTGAAACATGTGATTATCAAAAAAAAATAAGAATGATAGTGCTATCTGCTGGAAATGCATTTGAGGGACATATCTTTAGGTCTATGTGAAAATTTTATAAATGCTTCAATTCTATGAATATACTGATGTCAAAGAGGGAGAGCGATGGATAGTGGGTTTTATCAATTCAAATCATTAACTCAAAAATTAATTAGTCAACCTTCTAATAATTTGAGGAACCCTCCCTGGTAGCTCTCCCTCCTCCTTTGTCGGACAAGCATACTTCCATCAGTTTGACAATCTTTTCATTGGAACAGTGTGGCAATTGAAACGTGTTTTTCTACGGCCTGCTTGAATGACTTCGAATTATTTATTATGCCAACTTCTTTCTTTATGCACAAGTTCAAACGTCTGTCTTAACCGTTACATTTCAAACATTCTTTGATACTTGTTTAGTTAATTATACATGTTTTGAAACTTCCATTTCTCTCATATTTCATTTCTAATTGTCTTTCATCTTACCGTTTCTTTATGAAAAGTTTATTTCAATCAAATTTGGATGCTGTTGTTCATGCTTTTTATAAGTCTGACCTTACTGATAATTGATATTTATTGTTTGGTCAGTGAAGAGAGAGTTCCACTCAACAGGCGTCAAGAGAATGGGAGGTCATGGACATGACGAACCTTTTTACATTCACGCAAAACACATGTACAACTTGGACAGGATGTCAAACCAGAAGCTGAAGATGACTCTTGGTGTCTGGTCTGCAGTCGCCATTGGTGTTATAGTCCCAGTTTATGCTGTCGTCTTCCAGCAAAAGAAAACTGCTTCTGGCTAGATCATCATGCTATTACGTCTCCACCACAATAATGCTGCCCTTGGAGCTTCCATGTATGAAGATGAACCTATTGAATTAGAGAGCATTAAATAGCTTTCAGTTTTGACTTAGCTTTACCCTGGTGGTTGCTTTTCTTGTTTCTGTTTTGGCACAACATTGGTATGCCTGGTTCATTAATAATATTTTCTTAACTGAAAACCATATTGGTTGAACAT</genome_strand>
        <mrna_strand>TTTAAACTTAACCCTATCGAAACTACTCCGAGCGTCCATAGCAGGAAAACGAACAAAGGCAAGAGAACGGCGATGGCGTTGAACAACGGTTTGCGTTCATGTGCATCCCTTATCTCCAAAACTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAGAGAGAGTTCCACTCAACAGGCGTCAAGAGAATGGGAGGTCATGGACATGACGAACCTTTTTACATTCACGCAAAACACATGTACAACTTGGACAGGATGTCAAACCAGAAGCTGAAGATGACTCTTGGTGTCTGGTCTGCAGTCGCCATTGGTGTTATAGTCCCAGTTTATGCTGTCGTCTTCCAGCAAAAGAAAACTGCTTCTGGCTAGATCATCATGCTATTACGTCTCCACCACAATAATGCTGCCCTTGGAGCTTCCATGTATGAAGATGAACCTATTGAATTAGAGAGCATTAAATAGCTTTCAGTTTTGACTTAACTTTACCCTGGTGGTTGCTTTTCTTGTTTCTGTTTTGGCACAACATTGGTATGCCTGGTTCATTAATAATATTTTCTTAACTGAAAACCATATTGGTTGAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E716223" ref_strand="+" ref_description="SGN-E716223 [FB16BG12]">
      <seq>cgaaactactccgagcgtccatagcaggaaaacgaacaaaggcaagagaacggcgatggcgttgaacaacggtttgcgttcatgtgcatcccttatctccaaaactgtgaagagagagttccactcaacaggcgtcaagagaatgggaggtcatggacatgacgaacctttttacattcacgcaaaacacatgtacaacttggacaggatgtcaaaccagaagctgaagatgactcttggtgtctggtctgcagtcgccattggtgttatagtcccagtttatgctgtcgtcttccagcaaaagaaaactgcttctggctagatcatcatgctattacgtctccaccacaataatgctgcccttggagcttccatgtatgaagatgaacctattgaattagagagcattaaatagctttcagttttgacttagctttaccctggtggttgcttttcttgtttctgttttggcacaacattggtatgcctggttcattaataatattttcttaactgaaaaccatattggttgaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0132E21.2" temp_strand="-" temp_description="C06SLm0132E21.2  AC211087.2 htgs_phase:3 submitted_to_sgn_as:C06SLm0132E21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="112672" stop="108749"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112372" g_stop="112266" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="107" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112265" i_stop="109478" i_length="2788">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109477" g_stop="109050" g_length="428"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="535" r_length="428" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0132E21.2" gen_strand="-" ref_id="SGN-E716223" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>535</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0132E21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E716223" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112372" e_stop="112266"/>
          <exon e_start="109477" e_stop="109050"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAACTACTCCGAGCGTCCATAGCAGGAAAACGAACAAAGGCAAGAGAACGGCGATGGCGTTGAACAACGGTTTGCGTTCATGTGCATCCCTTATCTCCAAAACTGGTATTCTCATCTCGTAGAACTTATTTTTTCTATTATCATTTGTTCATTTGGTTTTTTTTTAAAACTGATTTATGATTATTGGAATGATATGAGTCGATTGATACAGAGCTGATCGATACTTACTTTTTAAAAAAAAATTGTTGTTGATTTATTGTTAATACTGAATGTTAAGCTGAAAATATGAACAAGAGAAGTCAATTTAGATTTCCGCTGCTGATTTAGGTATCGGTTTTTTAGATCTACCATTTTCTGGGGTATGCGCAATTGGCATATTTTTGTGGATCTGTTTGATGAAAAGTCAAATTAGATTTCCGCTGCTGATTTAGGTATTGCTTTTTCAGATCTACCCATTTTCTGGGGTATGCGCAATTGGCGTATTTTTGTGGATCTGTTTGATTTATAAGAACATAGGTATACATTTGTGATTATTCATATGTTATAGATATATCAATCTAATAGTAGGATTTAGTTCAATGTTCTTAGGAACGTCCGCCCCTTCTTGTCCATTCTTTGTTCATGTCTATCTGTTAGTTATTGTCGTTACCTTTACATAAAGTATGTGTCTTTCATGAGTTTTTGTAAAGCTTGGTTAGAATTATGAGATTTTGGAGTGCATCTAGTCTAAAATAGAATCTCAACTTTGTAATTAAGGACAAAAGATTGCATATTGGGATGAAATGGTCCTGGATATGGTGGTTCAGATAGTTGATTCATTGATATTGGGAGGCAGGATAGGTTGGGATTGTCATCCCTCAAACCATCCTTCAAATAAATGAGACTATTGTTACCAATTTATAGCAATTCTGTGCTTCTGGTCTTGTGGCGCATAGAGAGATGATACTTCACTGTTAATGTTGTGTGTTCCTCCTGTATGAATTATGATGCAAGACTGCTGGTTTCACAGTGCTGCAATGAGCCCTGTTCTCTCTAAAGTAATACGTTAGACTAAAATATGAGTAGAAACATCTAAAGATCATGACTTCTATAATAGAACCAAATAATAATTTCAGGTGGGCTATACGTACAGTATTTAGATTTGAGCATGAGGTCATATCTATCCATGTTATGCACAGTGGCTAGTTGTTGATATGTGGATAAATCAGCTATTTATGTAAGCCCCCTCTGTGAACTTGTGTAAAAGTTGGCAACAAGTAACATTAAGGATATTAAACAAGGTGCTCCATGTGAGTTTTTACCCTTAATAGTTCCTACTTTTTGGCTCATTGGCTGCTATACAGCACATATGCGCCTCAATATAAGAAGCTCTCTTATAATCTCCTGTTTTAAGTTTCATGCTTAATACAAGGGAATTTTATTCTCTTTTTTCTCTGTAACAACCGCTACTTCCATCTTATCCAAAATATCTACTTCTGATAGCTCTAGCTCTGGTCTCTTTGAGGTGATTTTATGTTCTTTATTGGCAAGGACAAAAGTACAATTATTATCATTGACATTCCAAGTTGAGCCCTGGTACATATAACTATTGTTGTTTTCAGCTTGCATGGAGCTACTTCCAAGATAAGAGGTTTGATGTAATTTTGGTCTAGAGTAGTCCATAAGGCTGGCTCTGGATGCTAGAACGGTGTATATATCTTATGGTGTCTTGTTTGGCCCACATGAATACCTTTTCGTTTATTTGCTTCTAAAACTTTTAAAGAAGGTTCATCAATATTTTGCATCAATCTGACCCTCAGGGGTTTGGTTTAGCGCTTTGAAAATATAACACGTGATGTCTGGGTTGGGCGCACGTCACCAGTTCAAACCCTTCCGCTAGCAAGAGGTATTTATGTGGGAGCAGGGTACTCCAAGTTCAAACTTGTGAGCCAGTTGGAGTTGGTCTAGCGAACCCACAGACCATTTCTCAATTATAAAAAAAAATGCATTAGTCTGATGCAAACTTGTCCAAAAAAGACTAAAAACGGCAAAATTCTCCCCATCCGTTGGAGCAAAATCTCAGATACTCTTTTGGTATTTGAACCTGCACCTTCTGAAATATGCTTGGCATTATCAAGTTGTTCCATCTCTTAAGAGCTTGTTGAGAAAATATTTTCACTTTATAGGTTTACTCATCCTGATGACTATTATCAACCATAAATCACAGTACTAGCCTAGGCCCTGCATTATGAACCTGGATGCATGAAATAGTCAGAATAGTTTGGTCGATCTTCTGAGCATTGTTCTTTTTGTGAAACATGTGATTATCAAAAAAAAATAAGAATGATAGTGCTATCTGCTGGAAATGCATTTGAGGGACATATCTTTAGGTCTATGTGAAAATTTTATAAATGCTTCAATTCTATGAATATACTGATGTCAAAGAGGGAGAGCGATGGATAGTGGGTTTTATCAATTCAAATCATTAACTCAAAAATTAATTAGTCAACCTTCTAATAATTTGAGGAACCCTCCCTGGTAGCTCTCCCTCCTCCTTTGTCGGACAAGCATACTTCCATCAGTTTGACAATCTTTTCATTGGAACAGTGTGGCAATTGAAACGTGTTTTTCTACGGCCTGCTTGAATGACTTCGAATTATTTATTATGCCAACTTCTTTCTTTATGCACAAGTTCAAACGTCTGTCTTAACCGTTACATTTCAAACATTCTTTGATACTTGTTTAGTTAATTATACATGTTTTGAAACTTCCATTTCTCTCATATTTCATTTCTAATTGTCTTTCATCTTACCGTTTCTTTATGAAAAGTTTATTTCAATCAAATTTGGATGCTGTTGTTCATGCTTTTTATAAGTCTGACCTTACTGATAATTGATATTTATTGTTTGGTCAGTGAAGAGAGAGTTCCACTCAACAGGCGTCAAGAGAATGGGAGGTCATGGACATGACGAACCTTTTTACATTCACGCAAAACACATGTACAACTTGGACAGGATGTCAAACCAGAAGCTGAAGATGACTCTTGGTGTCTGGTCTGCAGTCGCCATTGGTGTTATAGTCCCAGTTTATGCTGTCGTCTTCCAGCAAAAGAAAACTGCTTCTGGCTAGATCATCATGCTATTACGTCTCCACCACAATAATGCTGCCCTTGGAGCTTCCATGTATGAAGATGAACCTATTGAATTAGAGAGCATTAAATAGCTTTCAGTTTTGACTTAGCTTTACCCTGGTGGTTGCTTTTCTTGTTTCTGTTTTGGCACAACATTGGTATGCCTGGTTCATTAATAATATTTTCTTAACTGAAAACCATATTGGTTGAAC</genome_strand>
        <mrna_strand>CGAAACTACTCCGAGCGTCCATAGCAGGAAAACGAACAAAGGCAAGAGAACGGCGATGGCGTTGAACAACGGTTTGCGTTCATGTGCATCCCTTATCTCCAAAACTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAGAGAGAGTTCCACTCAACAGGCGTCAAGAGAATGGGAGGTCATGGACATGACGAACCTTTTTACATTCACGCAAAACACATGTACAACTTGGACAGGATGTCAAACCAGAAGCTGAAGATGACTCTTGGTGTCTGGTCTGCAGTCGCCATTGGTGTTATAGTCCCAGTTTATGCTGTCGTCTTCCAGCAAAAGAAAACTGCTTCTGGCTAGATCATCATGCTATTACGTCTCCACCACAATAATGCTGCCCTTGGAGCTTCCATGTATGAAGATGAACCTATTGAATTAGAGAGCATTAAATAGCTTTCAGTTTTGACTTAGCTTTACCCTGGTGGTTGCTTTTCTTGTTTCTGTTTTGGCACAACATTGGTATGCCTGGTTCATTAATAATATTTTCTTAACTGAAAACCATATTGGTTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E282952" ref_strand="+" ref_description="SGN-E282952 [cLER-17-O11]">
      <seq>ggcgatggcgttgaacaacggtttgcgttcatgtgcatcccttatctccaaaactgtgaagagagagttccactcaacaggcgtcaagagaatgggaggtcatggacatgacgaacctttttacattcacgcaaaacacatgtacaacttggacaggatgtcaaaccagaagctgaagatgactcttggtgtctggtctgcagtcgccattggtgttatagtcccagtttatgctgtcgtcttccagcaaaagaaaactgcttctggctagatcatcatgctattacgtctccaccacaataatgctgcccttggagcttccatgtatgaagatgaacctattgaattagagagcattaaatagctttcagttttgacttagctttaccctggtggttgcttttcttgtttctgttttggcacaacattggtatgcctggttcattaataatattttcttaactgaaaaccatattggttgaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0132E21.2" temp_strand="-" temp_description="C06SLm0132E21.2  AC211087.2 htgs_phase:3 submitted_to_sgn_as:C06SLm0132E21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="112621" stop="108749"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112321" g_stop="112266" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112265" i_stop="109478" i_length="2788">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109477" g_stop="109050" g_length="428"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="484" r_length="428" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0132E21.2" gen_strand="-" ref_id="SGN-E282952" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>484</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0132E21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E282952" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112321" e_stop="112266"/>
          <exon e_start="109477" e_stop="109050"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCGATGGCGTTGAACAACGGTTTGCGTTCATGTGCATCCCTTATCTCCAAAACTGGTATTCTCATCTCGTAGAACTTATTTTTTCTATTATCATTTGTTCATTTGGTTTTTTTTTAAAACTGATTTATGATTATTGGAATGATATGAGTCGATTGATACAGAGCTGATCGATACTTACTTTTTAAAAAAAAATTGTTGTTGATTTATTGTTAATACTGAATGTTAAGCTGAAAATATGAACAAGAGAAGTCAATTTAGATTTCCGCTGCTGATTTAGGTATCGGTTTTTTAGATCTACCATTTTCTGGGGTATGCGCAATTGGCATATTTTTGTGGATCTGTTTGATGAAAAGTCAAATTAGATTTCCGCTGCTGATTTAGGTATTGCTTTTTCAGATCTACCCATTTTCTGGGGTATGCGCAATTGGCGTATTTTTGTGGATCTGTTTGATTTATAAGAACATAGGTATACATTTGTGATTATTCATATGTTATAGATATATCAATCTAATAGTAGGATTTAGTTCAATGTTCTTAGGAACGTCCGCCCCTTCTTGTCCATTCTTTGTTCATGTCTATCTGTTAGTTATTGTCGTTACCTTTACATAAAGTATGTGTCTTTCATGAGTTTTTGTAAAGCTTGGTTAGAATTATGAGATTTTGGAGTGCATCTAGTCTAAAATAGAATCTCAACTTTGTAATTAAGGACAAAAGATTGCATATTGGGATGAAATGGTCCTGGATATGGTGGTTCAGATAGTTGATTCATTGATATTGGGAGGCAGGATAGGTTGGGATTGTCATCCCTCAAACCATCCTTCAAATAAATGAGACTATTGTTACCAATTTATAGCAATTCTGTGCTTCTGGTCTTGTGGCGCATAGAGAGATGATACTTCACTGTTAATGTTGTGTGTTCCTCCTGTATGAATTATGATGCAAGACTGCTGGTTTCACAGTGCTGCAATGAGCCCTGTTCTCTCTAAAGTAATACGTTAGACTAAAATATGAGTAGAAACATCTAAAGATCATGACTTCTATAATAGAACCAAATAATAATTTCAGGTGGGCTATACGTACAGTATTTAGATTTGAGCATGAGGTCATATCTATCCATGTTATGCACAGTGGCTAGTTGTTGATATGTGGATAAATCAGCTATTTATGTAAGCCCCCTCTGTGAACTTGTGTAAAAGTTGGCAACAAGTAACATTAAGGATATTAAACAAGGTGCTCCATGTGAGTTTTTACCCTTAATAGTTCCTACTTTTTGGCTCATTGGCTGCTATACAGCACATATGCGCCTCAATATAAGAAGCTCTCTTATAATCTCCTGTTTTAAGTTTCATGCTTAATACAAGGGAATTTTATTCTCTTTTTTCTCTGTAACAACCGCTACTTCCATCTTATCCAAAATATCTACTTCTGATAGCTCTAGCTCTGGTCTCTTTGAGGTGATTTTATGTTCTTTATTGGCAAGGACAAAAGTACAATTATTATCATTGACATTCCAAGTTGAGCCCTGGTACATATAACTATTGTTGTTTTCAGCTTGCATGGAGCTACTTCCAAGATAAGAGGTTTGATGTAATTTTGGTCTAGAGTAGTCCATAAGGCTGGCTCTGGATGCTAGAACGGTGTATATATCTTATGGTGTCTTGTTTGGCCCACATGAATACCTTTTCGTTTATTTGCTTCTAAAACTTTTAAAGAAGGTTCATCAATATTTTGCATCAATCTGACCCTCAGGGGTTTGGTTTAGCGCTTTGAAAATATAACACGTGATGTCTGGGTTGGGCGCACGTCACCAGTTCAAACCCTTCCGCTAGCAAGAGGTATTTATGTGGGAGCAGGGTACTCCAAGTTCAAACTTGTGAGCCAGTTGGAGTTGGTCTAGCGAACCCACAGACCATTTCTCAATTATAAAAAAAAATGCATTAGTCTGATGCAAACTTGTCCAAAAAAGACTAAAAACGGCAAAATTCTCCCCATCCGTTGGAGCAAAATCTCAGATACTCTTTTGGTATTTGAACCTGCACCTTCTGAAATATGCTTGGCATTATCAAGTTGTTCCATCTCTTAAGAGCTTGTTGAGAAAATATTTTCACTTTATAGGTTTACTCATCCTGATGACTATTATCAACCATAAATCACAGTACTAGCCTAGGCCCTGCATTATGAACCTGGATGCATGAAATAGTCAGAATAGTTTGGTCGATCTTCTGAGCATTGTTCTTTTTGTGAAACATGTGATTATCAAAAAAAAATAAGAATGATAGTGCTATCTGCTGGAAATGCATTTGAGGGACATATCTTTAGGTCTATGTGAAAATTTTATAAATGCTTCAATTCTATGAATATACTGATGTCAAAGAGGGAGAGCGATGGATAGTGGGTTTTATCAATTCAAATCATTAACTCAAAAATTAATTAGTCAACCTTCTAATAATTTGAGGAACCCTCCCTGGTAGCTCTCCCTCCTCCTTTGTCGGACAAGCATACTTCCATCAGTTTGACAATCTTTTCATTGGAACAGTGTGGCAATTGAAACGTGTTTTTCTACGGCCTGCTTGAATGACTTCGAATTATTTATTATGCCAACTTCTTTCTTTATGCACAAGTTCAAACGTCTGTCTTAACCGTTACATTTCAAACATTCTTTGATACTTGTTTAGTTAATTATACATGTTTTGAAACTTCCATTTCTCTCATATTTCATTTCTAATTGTCTTTCATCTTACCGTTTCTTTATGAAAAGTTTATTTCAATCAAATTTGGATGCTGTTGTTCATGCTTTTTATAAGTCTGACCTTACTGATAATTGATATTTATTGTTTGGTCAGTGAAGAGAGAGTTCCACTCAACAGGCGTCAAGAGAATGGGAGGTCATGGACATGACGAACCTTTTTACATTCACGCAAAACACATGTACAACTTGGACAGGATGTCAAACCAGAAGCTGAAGATGACTCTTGGTGTCTGGTCTGCAGTCGCCATTGGTGTTATAGTCCCAGTTTATGCTGTCGTCTTCCAGCAAAAGAAAACTGCTTCTGGCTAGATCATCATGCTATTACGTCTCCACCACAATAATGCTGCCCTTGGAGCTTCCATGTATGAAGATGAACCTATTGAATTAGAGAGCATTAAATAGCTTTCAGTTTTGACTTAGCTTTACCCTGGTGGTTGCTTTTCTTGTTTCTGTTTTGGCACAACATTGGTATGCCTGGTTCATTAATAATATTTTCTTAACTGAAAACCATATTGGTTGAAC</genome_strand>
        <mrna_strand>GGCGATGGCGTTGAACAACGGTTTGCGTTCATGTGCATCCCTTATCTCCAAAACTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAGAGAGAGTTCCACTCAACAGGCGTCAAGAGAATGGGAGGTCATGGACATGACGAACCTTTTTACATTCACGCAAAACACATGTACAACTTGGACAGGATGTCAAACCAGAAGCTGAAGATGACTCTTGGTGTCTGGTCTGCAGTCGCCATTGGTGTTATAGTCCCAGTTTATGCTGTCGTCTTCCAGCAAAAGAAAACTGCTTCTGGCTAGATCATCATGCTATTACGTCTCCACCACAATAATGCTGCCCTTGGAGCTTCCATGTATGAAGATGAACCTATTGAATTAGAGAGCATTAAATAGCTTTCAGTTTTGACTTAGCTTTACCCTGGTGGTTGCTTTTCTTGTTTCTGTTTTGGCACAACATTGGTATGCCTGGTTCATTAATAATATTTTCTTAACTGAAAACCATATTGGTTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E327014" ref_strand="+" ref_description="SGN-E327014 [cTOC-18-G14]">
      <seq>gcgttgaacaacggtttgcgttcatgtgcatcccttatctccaaaactgtgaagagagagttccactcaacaggcgtcaagagaatgggaggtcatggacatgacgaacctttttacattcacgcaaaacacatgtacaacttggacaggatgtcaaaccagaagctgaagatgactcttggtgtctggtctgcagtcgccattggtgttatagtcccagtttatgctgtcgtcttccagcaaaagaaaactgcttctggctagatcatcatgctattacgtctccaccacaataatgctgcccttggagcttccatgtatgaagatgaacctattgaattagagagcattaaatagctttcagttttgacttagctttaccctggtggttgcttttcttgtttctgttttggcacaacattggtatgcctggttcattaataatattttcttaactgaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0132E21.2" temp_strand="-" temp_description="C06SLm0132E21.2  AC211087.2 htgs_phase:3 submitted_to_sgn_as:C06SLm0132E21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="112614" stop="82532"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112314" g_stop="112266" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112265" i_stop="109478" i_length="2788">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109477" g_stop="109050" g_length="428"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="477" r_length="428" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0132E21.2" gen_strand="-" ref_id="SGN-E327014" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>477</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0132E21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E327014" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112314" e_stop="112266"/>
          <exon e_start="109477" e_stop="109050"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGTTGAACAACGGTTTGCGTTCATGTGCATCCCTTATCTCCAAAACTGGTATTCTCATCTCGTAGAACTTATTTTTTCTATTATCATTTGTTCATTTGGTTTTTTTTTAAAACTGATTTATGATTATTGGAATGATATGAGTCGATTGATACAGAGCTGATCGATACTTACTTTTTAAAAAAAAATTGTTGTTGATTTATTGTTAATACTGAATGTTAAGCTGAAAATATGAACAAGAGAAGTCAATTTAGATTTCCGCTGCTGATTTAGGTATCGGTTTTTTAGATCTACCATTTTCTGGGGTATGCGCAATTGGCATATTTTTGTGGATCTGTTTGATGAAAAGTCAAATTAGATTTCCGCTGCTGATTTAGGTATTGCTTTTTCAGATCTACCCATTTTCTGGGGTATGCGCAATTGGCGTATTTTTGTGGATCTGTTTGATTTATAAGAACATAGGTATACATTTGTGATTATTCATATGTTATAGATATATCAATCTAATAGTAGGATTTAGTTCAATGTTCTTAGGAACGTCCGCCCCTTCTTGTCCATTCTTTGTTCATGTCTATCTGTTAGTTATTGTCGTTACCTTTACATAAAGTATGTGTCTTTCATGAGTTTTTGTAAAGCTTGGTTAGAATTATGAGATTTTGGAGTGCATCTAGTCTAAAATAGAATCTCAACTTTGTAATTAAGGACAAAAGATTGCATATTGGGATGAAATGGTCCTGGATATGGTGGTTCAGATAGTTGATTCATTGATATTGGGAGGCAGGATAGGTTGGGATTGTCATCCCTCAAACCATCCTTCAAATAAATGAGACTATTGTTACCAATTTATAGCAATTCTGTGCTTCTGGTCTTGTGGCGCATAGAGAGATGATACTTCACTGTTAATGTTGTGTGTTCCTCCTGTATGAATTATGATGCAAGACTGCTGGTTTCACAGTGCTGCAATGAGCCCTGTTCTCTCTAAAGTAATACGTTAGACTAAAATATGAGTAGAAACATCTAAAGATCATGACTTCTATAATAGAACCAAATAATAATTTCAGGTGGGCTATACGTACAGTATTTAGATTTGAGCATGAGGTCATATCTATCCATGTTATGCACAGTGGCTAGTTGTTGATATGTGGATAAATCAGCTATTTATGTAAGCCCCCTCTGTGAACTTGTGTAAAAGTTGGCAACAAGTAACATTAAGGATATTAAACAAGGTGCTCCATGTGAGTTTTTACCCTTAATAGTTCCTACTTTTTGGCTCATTGGCTGCTATACAGCACATATGCGCCTCAATATAAGAAGCTCTCTTATAATCTCCTGTTTTAAGTTTCATGCTTAATACAAGGGAATTTTATTCTCTTTTTTCTCTGTAACAACCGCTACTTCCATCTTATCCAAAATATCTACTTCTGATAGCTCTAGCTCTGGTCTCTTTGAGGTGATTTTATGTTCTTTATTGGCAAGGACAAAAGTACAATTATTATCATTGACATTCCAAGTTGAGCCCTGGTACATATAACTATTGTTGTTTTCAGCTTGCATGGAGCTACTTCCAAGATAAGAGGTTTGATGTAATTTTGGTCTAGAGTAGTCCATAAGGCTGGCTCTGGATGCTAGAACGGTGTATATATCTTATGGTGTCTTGTTTGGCCCACATGAATACCTTTTCGTTTATTTGCTTCTAAAACTTTTAAAGAAGGTTCATCAATATTTTGCATCAATCTGACCCTCAGGGGTTTGGTTTAGCGCTTTGAAAATATAACACGTGATGTCTGGGTTGGGCGCACGTCACCAGTTCAAACCCTTCCGCTAGCAAGAGGTATTTATGTGGGAGCAGGGTACTCCAAGTTCAAACTTGTGAGCCAGTTGGAGTTGGTCTAGCGAACCCACAGACCATTTCTCAATTATAAAAAAAAATGCATTAGTCTGATGCAAACTTGTCCAAAAAAGACTAAAAACGGCAAAATTCTCCCCATCCGTTGGAGCAAAATCTCAGATACTCTTTTGGTATTTGAACCTGCACCTTCTGAAATATGCTTGGCATTATCAAGTTGTTCCATCTCTTAAGAGCTTGTTGAGAAAATATTTTCACTTTATAGGTTTACTCATCCTGATGACTATTATCAACCATAAATCACAGTACTAGCCTAGGCCCTGCATTATGAACCTGGATGCATGAAATAGTCAGAATAGTTTGGTCGATCTTCTGAGCATTGTTCTTTTTGTGAAACATGTGATTATCAAAAAAAAATAAGAATGATAGTGCTATCTGCTGGAAATGCATTTGAGGGACATATCTTTAGGTCTATGTGAAAATTTTATAAATGCTTCAATTCTATGAATATACTGATGTCAAAGAGGGAGAGCGATGGATAGTGGGTTTTATCAATTCAAATCATTAACTCAAAAATTAATTAGTCAACCTTCTAATAATTTGAGGAACCCTCCCTGGTAGCTCTCCCTCCTCCTTTGTCGGACAAGCATACTTCCATCAGTTTGACAATCTTTTCATTGGAACAGTGTGGCAATTGAAACGTGTTTTTCTACGGCCTGCTTGAATGACTTCGAATTATTTATTATGCCAACTTCTTTCTTTATGCACAAGTTCAAACGTCTGTCTTAACCGTTACATTTCAAACATTCTTTGATACTTGTTTAGTTAATTATACATGTTTTGAAACTTCCATTTCTCTCATATTTCATTTCTAATTGTCTTTCATCTTACCGTTTCTTTATGAAAAGTTTATTTCAATCAAATTTGGATGCTGTTGTTCATGCTTTTTATAAGTCTGACCTTACTGATAATTGATATTTATTGTTTGGTCAGTGAAGAGAGAGTTCCACTCAACAGGCGTCAAGAGAATGGGAGGTCATGGACATGACGAACCTTTTTACATTCACGCAAAACACATGTACAACTTGGACAGGATGTCAAACCAGAAGCTGAAGATGACTCTTGGTGTCTGGTCTGCAGTCGCCATTGGTGTTATAGTCCCAGTTTATGCTGTCGTCTTCCAGCAAAAGAAAACTGCTTCTGGCTAGATCATCATGCTATTACGTCTCCACCACAATAATGCTGCCCTTGGAGCTTCCATGTATGAAGATGAACCTATTGAATTAGAGAGCATTAAATAGCTTTCAGTTTTGACTTAGCTTTACCCTGGTGGTTGCTTTTCTTGTTTCTGTTTTGGCACAACATTGGTATGCCTGGTTCATTAATAATATTTTCTTAACTGAAAACCATATTGGTTGAAC</genome_strand>
        <mrna_strand>GCGTTGAACAACGGTTTGCGTTCATGTGCATCCCTTATCTCCAAAACTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAGAGAGAGTTCCACTCAACAGGCGTCAAGAGAATGGGAGGTCATGGACATGACGAACCTTTTTACATTCACGCAAAACACATGTACAACTTGGACAGGATGTCAAACCAGAAGCTGAAGATGACTCTTGGTGTCTGGTCTGCAGTCGCCATTGGTGTTATAGTCCCAGTTTATGCTGTCGTCTTCCAGCAAAAGAAAACTGCTTCTGGCTAGATCATCATGCTATTACGTCTCCACCACAATAATGCTGCCCTTGGAGCTTCCATGTATGAAGATGAACCTATTGAATTAGAGAGCATTAAATAGCTTTCAGTTTTGACTTAGCTTTACCCTGGTGGTTGCTTTTCTTGTTTCTGTTTTGGCACAACATTGGTATGCCTGGTTCATTAATAATATTTTCTTAACTGAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E282226" ref_strand="+" ref_description="SGN-E282226 [cLES-4-K19]">
      <seq>ttacattcacgcaaaacacatgtacaacttggacaggatgtcaaaccagaagctgaagatgactcttggtgtctggtctgcagtcgccattggtgttatagtcccagtttatgctgtcgtcttccagcaaaagaaaactgcttctggctagatcatcatgctattacgtctccaccacaataatgctgcccttggagcttccatgtatgaagatgaacctattgaattagagagcattaaatagctttcagttttgacttagctttaccctggtggttgcttttcttgtttctgttttggcacaacattggtatgcctggttcattaataatattttcttaactgaaaaccatattggttgaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0132E21.2" temp_strand="-" temp_description="C06SLm0132E21.2  AC211087.2 htgs_phase:3 submitted_to_sgn_as:C06SLm0132E21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="109713" stop="108749"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109413" g_stop="109050" g_length="364"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="364" r_length="364" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0132E21.2" gen_strand="-" ref_id="SGN-E282226" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>364</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0132E21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E282226" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109413" e_stop="109050"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACATTCACGCAAAACACATGTACAACTTGGACAGGATGTCAAACCAGAAGCTGAAGATGACTCTTGGTGTCTGGTCTGCAGTCGCCATTGGTGTTATAGTCCCAGTTTATGCTGTCGTCTTCCAGCAAAAGAAAACTGCTTCTGGCTAGATCATCATGCTATTACGTCTCCACCACAATAATGCTGCCCTTGGAGCTTCCATGTATGAAGATGAACCTATTGAATTAGAGAGCATTAAATAGCTTTCAGTTTTGACTTAGCTTTACCCTGGTGGTTGCTTTTCTTGTTTCTGTTTTGGCACAACATTGGTATGCCTGGTTCATTAATAATATTTTCTTAACTGAAAACCATATTGGTTGAAC</genome_strand>
        <mrna_strand>TTACATTCACGCAAAACACATGTACAACTTGGACAGGATGTCAAACCAGAAGCTGAAGATGACTCTTGGTGTCTGGTCTGCAGTCGCCATTGGTGTTATAGTCCCAGTTTATGCTGTCGTCTTCCAGCAAAAGAAAACTGCTTCTGGCTAGATCATCATGCTATTACGTCTCCACCACAATAATGCTGCCCTTGGAGCTTCCATGTATGAAGATGAACCTATTGAATTAGAGAGCATTAAATAGCTTTCAGTTTTGACTTAGCTTTACCCTGGTGGTTGCTTTTCTTGTTTCTGTTTTGGCACAACATTGGTATGCCTGGTTCATTAATAATATTTTCTTAACTGAAAACCATATTGGTTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E312887" ref_strand="+" ref_description="SGN-E312887 [cTOA-8-L1]">
      <seq>tccgagcgtccatagcaggaaaacgaacaaaggcaagagaacggcgatggcgtggaacaacggtttgcgttcatgtgcatcccttatctccaaaactgtgaagagagagttccactcaacaggcgtcaagagaatgggaggtcatggacatgacgaacctttttacattcacgcaaaacacatgtacaacttggacaggatgtcaaaccagaagctgaagatgactcttggtgtctggtctgcagtcgccattggtgttatagtcccagtttatgctgtcgtcttccagcaaaagaaaactgcttctggctagatcatcatgctattacgtctccaccacaataatgctgcccttggagcttccatgtatgaagatgaacctattgaattagagagcattaaatagctttcagttttgacttagctttaccctggtggttgcttttcttgtttctgctttggcacaacattggtatgcctggttcattaataatattttcttaactgaaaaccatattgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0132E21.2" temp_strand="-" temp_description="C06SLm0132E21.2  AC211087.2 htgs_phase:3 submitted_to_sgn_as:C06SLm0132E21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="112663" stop="108756"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112363" g_stop="112266" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="98" r_length="98" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112265" i_stop="109478" i_length="2788">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109477" g_stop="109056" g_length="422"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="520" r_length="422" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0132E21.2" gen_strand="-" ref_id="SGN-E312887" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>520</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0132E21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E312887" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112363" e_stop="112266"/>
          <exon e_start="109477" e_stop="109056"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCGAGCGTCCATAGCAGGAAAACGAACAAAGGCAAGAGAACGGCGATGGCGTTGAACAACGGTTTGCGTTCATGTGCATCCCTTATCTCCAAAACTGGTATTCTCATCTCGTAGAACTTATTTTTTCTATTATCATTTGTTCATTTGGTTTTTTTTTAAAACTGATTTATGATTATTGGAATGATATGAGTCGATTGATACAGAGCTGATCGATACTTACTTTTTAAAAAAAAATTGTTGTTGATTTATTGTTAATACTGAATGTTAAGCTGAAAATATGAACAAGAGAAGTCAATTTAGATTTCCGCTGCTGATTTAGGTATCGGTTTTTTAGATCTACCATTTTCTGGGGTATGCGCAATTGGCATATTTTTGTGGATCTGTTTGATGAAAAGTCAAATTAGATTTCCGCTGCTGATTTAGGTATTGCTTTTTCAGATCTACCCATTTTCTGGGGTATGCGCAATTGGCGTATTTTTGTGGATCTGTTTGATTTATAAGAACATAGGTATACATTTGTGATTATTCATATGTTATAGATATATCAATCTAATAGTAGGATTTAGTTCAATGTTCTTAGGAACGTCCGCCCCTTCTTGTCCATTCTTTGTTCATGTCTATCTGTTAGTTATTGTCGTTACCTTTACATAAAGTATGTGTCTTTCATGAGTTTTTGTAAAGCTTGGTTAGAATTATGAGATTTTGGAGTGCATCTAGTCTAAAATAGAATCTCAACTTTGTAATTAAGGACAAAAGATTGCATATTGGGATGAAATGGTCCTGGATATGGTGGTTCAGATAGTTGATTCATTGATATTGGGAGGCAGGATAGGTTGGGATTGTCATCCCTCAAACCATCCTTCAAATAAATGAGACTATTGTTACCAATTTATAGCAATTCTGTGCTTCTGGTCTTGTGGCGCATAGAGAGATGATACTTCACTGTTAATGTTGTGTGTTCCTCCTGTATGAATTATGATGCAAGACTGCTGGTTTCACAGTGCTGCAATGAGCCCTGTTCTCTCTAAAGTAATACGTTAGACTAAAATATGAGTAGAAACATCTAAAGATCATGACTTCTATAATAGAACCAAATAATAATTTCAGGTGGGCTATACGTACAGTATTTAGATTTGAGCATGAGGTCATATCTATCCATGTTATGCACAGTGGCTAGTTGTTGATATGTGGATAAATCAGCTATTTATGTAAGCCCCCTCTGTGAACTTGTGTAAAAGTTGGCAACAAGTAACATTAAGGATATTAAACAAGGTGCTCCATGTGAGTTTTTACCCTTAATAGTTCCTACTTTTTGGCTCATTGGCTGCTATACAGCACATATGCGCCTCAATATAAGAAGCTCTCTTATAATCTCCTGTTTTAAGTTTCATGCTTAATACAAGGGAATTTTATTCTCTTTTTTCTCTGTAACAACCGCTACTTCCATCTTATCCAAAATATCTACTTCTGATAGCTCTAGCTCTGGTCTCTTTGAGGTGATTTTATGTTCTTTATTGGCAAGGACAAAAGTACAATTATTATCATTGACATTCCAAGTTGAGCCCTGGTACATATAACTATTGTTGTTTTCAGCTTGCATGGAGCTACTTCCAAGATAAGAGGTTTGATGTAATTTTGGTCTAGAGTAGTCCATAAGGCTGGCTCTGGATGCTAGAACGGTGTATATATCTTATGGTGTCTTGTTTGGCCCACATGAATACCTTTTCGTTTATTTGCTTCTAAAACTTTTAAAGAAGGTTCATCAATATTTTGCATCAATCTGACCCTCAGGGGTTTGGTTTAGCGCTTTGAAAATATAACACGTGATGTCTGGGTTGGGCGCACGTCACCAGTTCAAACCCTTCCGCTAGCAAGAGGTATTTATGTGGGAGCAGGGTACTCCAAGTTCAAACTTGTGAGCCAGTTGGAGTTGGTCTAGCGAACCCACAGACCATTTCTCAATTATAAAAAAAAATGCATTAGTCTGATGCAAACTTGTCCAAAAAAGACTAAAAACGGCAAAATTCTCCCCATCCGTTGGAGCAAAATCTCAGATACTCTTTTGGTATTTGAACCTGCACCTTCTGAAATATGCTTGGCATTATCAAGTTGTTCCATCTCTTAAGAGCTTGTTGAGAAAATATTTTCACTTTATAGGTTTACTCATCCTGATGACTATTATCAACCATAAATCACAGTACTAGCCTAGGCCCTGCATTATGAACCTGGATGCATGAAATAGTCAGAATAGTTTGGTCGATCTTCTGAGCATTGTTCTTTTTGTGAAACATGTGATTATCAAAAAAAAATAAGAATGATAGTGCTATCTGCTGGAAATGCATTTGAGGGACATATCTTTAGGTCTATGTGAAAATTTTATAAATGCTTCAATTCTATGAATATACTGATGTCAAAGAGGGAGAGCGATGGATAGTGGGTTTTATCAATTCAAATCATTAACTCAAAAATTAATTAGTCAACCTTCTAATAATTTGAGGAACCCTCCCTGGTAGCTCTCCCTCCTCCTTTGTCGGACAAGCATACTTCCATCAGTTTGACAATCTTTTCATTGGAACAGTGTGGCAATTGAAACGTGTTTTTCTACGGCCTGCTTGAATGACTTCGAATTATTTATTATGCCAACTTCTTTCTTTATGCACAAGTTCAAACGTCTGTCTTAACCGTTACATTTCAAACATTCTTTGATACTTGTTTAGTTAATTATACATGTTTTGAAACTTCCATTTCTCTCATATTTCATTTCTAATTGTCTTTCATCTTACCGTTTCTTTATGAAAAGTTTATTTCAATCAAATTTGGATGCTGTTGTTCATGCTTTTTATAAGTCTGACCTTACTGATAATTGATATTTATTGTTTGGTCAGTGAAGAGAGAGTTCCACTCAACAGGCGTCAAGAGAATGGGAGGTCATGGACATGACGAACCTTTTTACATTCACGCAAAACACATGTACAACTTGGACAGGATGTCAAACCAGAAGCTGAAGATGACTCTTGGTGTCTGGTCTGCAGTCGCCATTGGTGTTATAGTCCCAGTTTATGCTGTCGTCTTCCAGCAAAAGAAAACTGCTTCTGGCTAGATCATCATGCTATTACGTCTCCACCACAATAATGCTGCCCTTGGAGCTTCCATGTATGAAGATGAACCTATTGAATTAGAGAGCATTAAATAGCTTTCAGTTTTGACTTAGCTTTACCCTGGTGGTTGCTTTTCTTGTTTCTGTTTTGGCACAACATTGGTATGCCTGGTTCATTAATAATATTTTCTTAACTGAAAACCATATTGG</genome_strand>
        <mrna_strand>TCCGAGCGTCCATAGCAGGAAAACGAACAAAGGCAAGAGAACGGCGATGGCGTGGAACAACGGTTTGCGTTCATGTGCATCCCTTATCTCCAAAACTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAGAGAGAGTTCCACTCAACAGGCGTCAAGAGAATGGGAGGTCATGGACATGACGAACCTTTTTACATTCACGCAAAACACATGTACAACTTGGACAGGATGTCAAACCAGAAGCTGAAGATGACTCTTGGTGTCTGGTCTGCAGTCGCCATTGGTGTTATAGTCCCAGTTTATGCTGTCGTCTTCCAGCAAAAGAAAACTGCTTCTGGCTAGATCATCATGCTATTACGTCTCCACCACAATAATGCTGCCCTTGGAGCTTCCATGTATGAAGATGAACCTATTGAATTAGAGAGCATTAAATAGCTTTCAGTTTTGACTTAGCTTTACCCTGGTGGTTGCTTTTCTTGTTTCTGCTTTGGCACAACATTGGTATGCCTGGTTCATTAATAATATTTTCTTAACTGAAAACCATATTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E284174" ref_strand="+" ref_description="SGN-E284174 [cLER-16-C13]">
      <seq>ctactccgagcgtccatagcaggaaaacgaacaaaggcaagagaacggcgatggcgttgaacaacggtttgcgttcatgtgcatcccttatctccaaaactgtgaagagagagttccactcaacaggcgtcaagagaatgggaggtcatggacatgacgaacctttttacattcacgcaaaacacatgtacaacttggacaggatgtcaaaccagaagctgaagatgactcttggtgtctggtctgcagtcgccattggtgttatagtcccagtttatgctgtcgtcttccagcaaaagaaaactgcttctggctagatcatcatgctattacgtctccaccacaataatgctgcccttggagcttccatgtatgaagatgaacctattgaattagagagcattaaatagctttcagttttgacttagctttaccctggtggttgcttttcttgtttctggtttggcacaacattggtatgcctggttcattaataatattttcttaactgaaaaccaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0132E21.2" temp_strand="-" temp_description="C06SLm0132E21.2  AC211087.2 htgs_phase:3 submitted_to_sgn_as:C06SLm0132E21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="112667" stop="108760"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112367" g_stop="112266" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="102" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112265" i_stop="109478" i_length="2788">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109477" g_stop="109063" g_length="415"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="517" r_length="415" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="518" polyA_stop="527"/>
      <MATCH_line gen_id="C06SLm0132E21.2" gen_strand="-" ref_id="SGN-E284174" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>517</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0132E21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E284174" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112367" e_stop="112266"/>
          <exon e_start="109477" e_stop="109063"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACTCCGAGCGTCCATAGCAGGAAAACGAACAAAGGCAAGAGAACGGCGATGGCGTTGAACAACGGTTTGCGTTCATGTGCATCCCTTATCTCCAAAACTGGTATTCTCATCTCGTAGAACTTATTTTTTCTATTATCATTTGTTCATTTGGTTTTTTTTTAAAACTGATTTATGATTATTGGAATGATATGAGTCGATTGATACAGAGCTGATCGATACTTACTTTTTAAAAAAAAATTGTTGTTGATTTATTGTTAATACTGAATGTTAAGCTGAAAATATGAACAAGAGAAGTCAATTTAGATTTCCGCTGCTGATTTAGGTATCGGTTTTTTAGATCTACCATTTTCTGGGGTATGCGCAATTGGCATATTTTTGTGGATCTGTTTGATGAAAAGTCAAATTAGATTTCCGCTGCTGATTTAGGTATTGCTTTTTCAGATCTACCCATTTTCTGGGGTATGCGCAATTGGCGTATTTTTGTGGATCTGTTTGATTTATAAGAACATAGGTATACATTTGTGATTATTCATATGTTATAGATATATCAATCTAATAGTAGGATTTAGTTCAATGTTCTTAGGAACGTCCGCCCCTTCTTGTCCATTCTTTGTTCATGTCTATCTGTTAGTTATTGTCGTTACCTTTACATAAAGTATGTGTCTTTCATGAGTTTTTGTAAAGCTTGGTTAGAATTATGAGATTTTGGAGTGCATCTAGTCTAAAATAGAATCTCAACTTTGTAATTAAGGACAAAAGATTGCATATTGGGATGAAATGGTCCTGGATATGGTGGTTCAGATAGTTGATTCATTGATATTGGGAGGCAGGATAGGTTGGGATTGTCATCCCTCAAACCATCCTTCAAATAAATGAGACTATTGTTACCAATTTATAGCAATTCTGTGCTTCTGGTCTTGTGGCGCATAGAGAGATGATACTTCACTGTTAATGTTGTGTGTTCCTCCTGTATGAATTATGATGCAAGACTGCTGGTTTCACAGTGCTGCAATGAGCCCTGTTCTCTCTAAAGTAATACGTTAGACTAAAATATGAGTAGAAACATCTAAAGATCATGACTTCTATAATAGAACCAAATAATAATTTCAGGTGGGCTATACGTACAGTATTTAGATTTGAGCATGAGGTCATATCTATCCATGTTATGCACAGTGGCTAGTTGTTGATATGTGGATAAATCAGCTATTTATGTAAGCCCCCTCTGTGAACTTGTGTAAAAGTTGGCAACAAGTAACATTAAGGATATTAAACAAGGTGCTCCATGTGAGTTTTTACCCTTAATAGTTCCTACTTTTTGGCTCATTGGCTGCTATACAGCACATATGCGCCTCAATATAAGAAGCTCTCTTATAATCTCCTGTTTTAAGTTTCATGCTTAATACAAGGGAATTTTATTCTCTTTTTTCTCTGTAACAACCGCTACTTCCATCTTATCCAAAATATCTACTTCTGATAGCTCTAGCTCTGGTCTCTTTGAGGTGATTTTATGTTCTTTATTGGCAAGGACAAAAGTACAATTATTATCATTGACATTCCAAGTTGAGCCCTGGTACATATAACTATTGTTGTTTTCAGCTTGCATGGAGCTACTTCCAAGATAAGAGGTTTGATGTAATTTTGGTCTAGAGTAGTCCATAAGGCTGGCTCTGGATGCTAGAACGGTGTATATATCTTATGGTGTCTTGTTTGGCCCACATGAATACCTTTTCGTTTATTTGCTTCTAAAACTTTTAAAGAAGGTTCATCAATATTTTGCATCAATCTGACCCTCAGGGGTTTGGTTTAGCGCTTTGAAAATATAACACGTGATGTCTGGGTTGGGCGCACGTCACCAGTTCAAACCCTTCCGCTAGCAAGAGGTATTTATGTGGGAGCAGGGTACTCCAAGTTCAAACTTGTGAGCCAGTTGGAGTTGGTCTAGCGAACCCACAGACCATTTCTCAATTATAAAAAAAAATGCATTAGTCTGATGCAAACTTGTCCAAAAAAGACTAAAAACGGCAAAATTCTCCCCATCCGTTGGAGCAAAATCTCAGATACTCTTTTGGTATTTGAACCTGCACCTTCTGAAATATGCTTGGCATTATCAAGTTGTTCCATCTCTTAAGAGCTTGTTGAGAAAATATTTTCACTTTATAGGTTTACTCATCCTGATGACTATTATCAACCATAAATCACAGTACTAGCCTAGGCCCTGCATTATGAACCTGGATGCATGAAATAGTCAGAATAGTTTGGTCGATCTTCTGAGCATTGTTCTTTTTGTGAAACATGTGATTATCAAAAAAAAATAAGAATGATAGTGCTATCTGCTGGAAATGCATTTGAGGGACATATCTTTAGGTCTATGTGAAAATTTTATAAATGCTTCAATTCTATGAATATACTGATGTCAAAGAGGGAGAGCGATGGATAGTGGGTTTTATCAATTCAAATCATTAACTCAAAAATTAATTAGTCAACCTTCTAATAATTTGAGGAACCCTCCCTGGTAGCTCTCCCTCCTCCTTTGTCGGACAAGCATACTTCCATCAGTTTGACAATCTTTTCATTGGAACAGTGTGGCAATTGAAACGTGTTTTTCTACGGCCTGCTTGAATGACTTCGAATTATTTATTATGCCAACTTCTTTCTTTATGCACAAGTTCAAACGTCTGTCTTAACCGTTACATTTCAAACATTCTTTGATACTTGTTTAGTTAATTATACATGTTTTGAAACTTCCATTTCTCTCATATTTCATTTCTAATTGTCTTTCATCTTACCGTTTCTTTATGAAAAGTTTATTTCAATCAAATTTGGATGCTGTTGTTCATGCTTTTTATAAGTCTGACCTTACTGATAATTGATATTTATTGTTTGGTCAGTGAAGAGAGAGTTCCACTCAACAGGCGTCAAGAGAATGGGAGGTCATGGACATGACGAACCTTTTTACATTCACGCAAAACACATGTACAACTTGGACAGGATGTCAAACCAGAAGCTGAAGATGACTCTTGGTGTCTGGTCTGCAGTCGCCATTGGTGTTATAGTCCCAGTTTATGCTGTCGTCTTCCAGCAAAAGAAAACTGCTTCTGGCTAGATCATCATGCTATTACGTCTCCACCACAATAATGCTGCCCTTGGAGCTTCCATGTATGAAGATGAACCTATTGAATTAGAGAGCATTAAATAGCTTTCAGTTTTGACTTAGCTTTACCCTGGTGGTTGCTTTTCTTGTTTCTGTTTTGGCACAACATTGGTATGCCTGGTTCATTAATAATATTTTCTTAACTGAAAACC</genome_strand>
        <mrna_strand>CTACTCCGAGCGTCCATAGCAGGAAAACGAACAAAGGCAAGAGAACGGCGATGGCGTTGAACAACGGTTTGCGTTCATGTGCATCCCTTATCTCCAAAACTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAGAGAGAGTTCCACTCAACAGGCGTCAAGAGAATGGGAGGTCATGGACATGACGAACCTTTTTACATTCACGCAAAACACATGTACAACTTGGACAGGATGTCAAACCAGAAGCTGAAGATGACTCTTGGTGTCTGGTCTGCAGTCGCCATTGGTGTTATAGTCCCAGTTTATGCTGTCGTCTTCCAGCAAAAGAAAACTGCTTCTGGCTAGATCATCATGCTATTACGTCTCCACCACAATAATGCTGCCCTTGGAGCTTCCATGTATGAAGATGAACCTATTGAATTAGAGAGCATTAAATAGCTTTCAGTTTTGACTTAGCTTTACCCTGGTGGTTGCTTTTCTTGTTTCTGGTTTGGCACAACATTGGTATGCCTGGTTCATTAATAATATTTTCTTAACTGAAAACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E339278" ref_strand="+" ref_description="SGN-E339278 [cTOF-4-D5]">
      <seq>aggaaaacgaacaaaggcaagagaacggcgatggcgttgaacaacggtttgcgttcatgtgcatcccttatctccaaaactgtgaagagagagttccactcaacatgcgtcaagagaatgggaggtcatggacatgacgaacctttttacattcacgcaaaacacatgtacaacttggacaggatgtcaaaccagaagctgaagatgactcttggtgtctggtctgcagtcgccattggtgttatagtcccagtttatgctgtcgtcttccagcaaaagaaaactgcttctggctagatcatcatgctattacgtctccaccacaataatgctgcccttggagcttccatgtatgaagatgaacctattgaattagagagcattaaatagctttcagttttgacttagctttaccctggtggttgcttttcttgtttctgttttggcacaacattggtatgcctggctcattaataatattttcttaactgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0132E21.2" temp_strand="-" temp_description="C06SLm0132E21.2  AC211087.2 htgs_phase:3 submitted_to_sgn_as:C06SLm0132E21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="112647" stop="108766"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112347" g_stop="112266" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112265" i_stop="109478" i_length="2788">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109477" g_stop="109067" g_length="411"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="493" r_length="411" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0132E21.2" gen_strand="-" ref_id="SGN-E339278" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>493</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0132E21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E339278" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112347" e_stop="112266"/>
          <exon e_start="109477" e_stop="109067"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAAAACGAACAAAGGCAAGAGAACGGCGATGGCGTTGAACAACGGTTTGCGTTCATGTGCATCCCTTATCTCCAAAACTGGTATTCTCATCTCGTAGAACTTATTTTTTCTATTATCATTTGTTCATTTGGTTTTTTTTTAAAACTGATTTATGATTATTGGAATGATATGAGTCGATTGATACAGAGCTGATCGATACTTACTTTTTAAAAAAAAATTGTTGTTGATTTATTGTTAATACTGAATGTTAAGCTGAAAATATGAACAAGAGAAGTCAATTTAGATTTCCGCTGCTGATTTAGGTATCGGTTTTTTAGATCTACCATTTTCTGGGGTATGCGCAATTGGCATATTTTTGTGGATCTGTTTGATGAAAAGTCAAATTAGATTTCCGCTGCTGATTTAGGTATTGCTTTTTCAGATCTACCCATTTTCTGGGGTATGCGCAATTGGCGTATTTTTGTGGATCTGTTTGATTTATAAGAACATAGGTATACATTTGTGATTATTCATATGTTATAGATATATCAATCTAATAGTAGGATTTAGTTCAATGTTCTTAGGAACGTCCGCCCCTTCTTGTCCATTCTTTGTTCATGTCTATCTGTTAGTTATTGTCGTTACCTTTACATAAAGTATGTGTCTTTCATGAGTTTTTGTAAAGCTTGGTTAGAATTATGAGATTTTGGAGTGCATCTAGTCTAAAATAGAATCTCAACTTTGTAATTAAGGACAAAAGATTGCATATTGGGATGAAATGGTCCTGGATATGGTGGTTCAGATAGTTGATTCATTGATATTGGGAGGCAGGATAGGTTGGGATTGTCATCCCTCAAACCATCCTTCAAATAAATGAGACTATTGTTACCAATTTATAGCAATTCTGTGCTTCTGGTCTTGTGGCGCATAGAGAGATGATACTTCACTGTTAATGTTGTGTGTTCCTCCTGTATGAATTATGATGCAAGACTGCTGGTTTCACAGTGCTGCAATGAGCCCTGTTCTCTCTAAAGTAATACGTTAGACTAAAATATGAGTAGAAACATCTAAAGATCATGACTTCTATAATAGAACCAAATAATAATTTCAGGTGGGCTATACGTACAGTATTTAGATTTGAGCATGAGGTCATATCTATCCATGTTATGCACAGTGGCTAGTTGTTGATATGTGGATAAATCAGCTATTTATGTAAGCCCCCTCTGTGAACTTGTGTAAAAGTTGGCAACAAGTAACATTAAGGATATTAAACAAGGTGCTCCATGTGAGTTTTTACCCTTAATAGTTCCTACTTTTTGGCTCATTGGCTGCTATACAGCACATATGCGCCTCAATATAAGAAGCTCTCTTATAATCTCCTGTTTTAAGTTTCATGCTTAATACAAGGGAATTTTATTCTCTTTTTTCTCTGTAACAACCGCTACTTCCATCTTATCCAAAATATCTACTTCTGATAGCTCTAGCTCTGGTCTCTTTGAGGTGATTTTATGTTCTTTATTGGCAAGGACAAAAGTACAATTATTATCATTGACATTCCAAGTTGAGCCCTGGTACATATAACTATTGTTGTTTTCAGCTTGCATGGAGCTACTTCCAAGATAAGAGGTTTGATGTAATTTTGGTCTAGAGTAGTCCATAAGGCTGGCTCTGGATGCTAGAACGGTGTATATATCTTATGGTGTCTTGTTTGGCCCACATGAATACCTTTTCGTTTATTTGCTTCTAAAACTTTTAAAGAAGGTTCATCAATATTTTGCATCAATCTGACCCTCAGGGGTTTGGTTTAGCGCTTTGAAAATATAACACGTGATGTCTGGGTTGGGCGCACGTCACCAGTTCAAACCCTTCCGCTAGCAAGAGGTATTTATGTGGGAGCAGGGTACTCCAAGTTCAAACTTGTGAGCCAGTTGGAGTTGGTCTAGCGAACCCACAGACCATTTCTCAATTATAAAAAAAAATGCATTAGTCTGATGCAAACTTGTCCAAAAAAGACTAAAAACGGCAAAATTCTCCCCATCCGTTGGAGCAAAATCTCAGATACTCTTTTGGTATTTGAACCTGCACCTTCTGAAATATGCTTGGCATTATCAAGTTGTTCCATCTCTTAAGAGCTTGTTGAGAAAATATTTTCACTTTATAGGTTTACTCATCCTGATGACTATTATCAACCATAAATCACAGTACTAGCCTAGGCCCTGCATTATGAACCTGGATGCATGAAATAGTCAGAATAGTTTGGTCGATCTTCTGAGCATTGTTCTTTTTGTGAAACATGTGATTATCAAAAAAAAATAAGAATGATAGTGCTATCTGCTGGAAATGCATTTGAGGGACATATCTTTAGGTCTATGTGAAAATTTTATAAATGCTTCAATTCTATGAATATACTGATGTCAAAGAGGGAGAGCGATGGATAGTGGGTTTTATCAATTCAAATCATTAACTCAAAAATTAATTAGTCAACCTTCTAATAATTTGAGGAACCCTCCCTGGTAGCTCTCCCTCCTCCTTTGTCGGACAAGCATACTTCCATCAGTTTGACAATCTTTTCATTGGAACAGTGTGGCAATTGAAACGTGTTTTTCTACGGCCTGCTTGAATGACTTCGAATTATTTATTATGCCAACTTCTTTCTTTATGCACAAGTTCAAACGTCTGTCTTAACCGTTACATTTCAAACATTCTTTGATACTTGTTTAGTTAATTATACATGTTTTGAAACTTCCATTTCTCTCATATTTCATTTCTAATTGTCTTTCATCTTACCGTTTCTTTATGAAAAGTTTATTTCAATCAAATTTGGATGCTGTTGTTCATGCTTTTTATAAGTCTGACCTTACTGATAATTGATATTTATTGTTTGGTCAGTGAAGAGAGAGTTCCACTCAACAGGCGTCAAGAGAATGGGAGGTCATGGACATGACGAACCTTTTTACATTCACGCAAAACACATGTACAACTTGGACAGGATGTCAAACCAGAAGCTGAAGATGACTCTTGGTGTCTGGTCTGCAGTCGCCATTGGTGTTATAGTCCCAGTTTATGCTGTCGTCTTCCAGCAAAAGAAAACTGCTTCTGGCTAGATCATCATGCTATTACGTCTCCACCACAATAATGCTGCCCTTGGAGCTTCCATGTATGAAGATGAACCTATTGAATTAGAGAGCATTAAATAGCTTTCAGTTTTGACTTAGCTTTACCCTGGTGGTTGCTTTTCTTGTTTCTGTTTTGGCACAACATTGGTATGCCTGGTTCATTAATAATATTTTCTTAACTGAA</genome_strand>
        <mrna_strand>AGGAAAACGAACAAAGGCAAGAGAACGGCGATGGCGTTGAACAACGGTTTGCGTTCATGTGCATCCCTTATCTCCAAAACTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAGAGAGAGTTCCACTCAACATGCGTCAAGAGAATGGGAGGTCATGGACATGACGAACCTTTTTACATTCACGCAAAACACATGTACAACTTGGACAGGATGTCAAACCAGAAGCTGAAGATGACTCTTGGTGTCTGGTCTGCAGTCGCCATTGGTGTTATAGTCCCAGTTTATGCTGTCGTCTTCCAGCAAAAGAAAACTGCTTCTGGCTAGATCATCATGCTATTACGTCTCCACCACAATAATGCTGCCCTTGGAGCTTCCATGTATGAAGATGAACCTATTGAATTAGAGAGCATTAAATAGCTTTCAGTTTTGACTTAGCTTTACCCTGGTGGTTGCTTTTCTTGTTTCTGTTTTGGCACAACATTGGTATGCCTGGCTCATTAATAATATTTTCTTAACTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E695322" ref_strand="+" ref_description="SGN-E695322 [LH_Ea06D16](-)">
      <seq>cgagggtccatagcaggaaaacgaagaaaggcaagagatcggcgatggcgttgaacaacggcttggtgttcatgtgcatccattatctccaaaactgtgaagagagagttcccctcaacatgtgtcaagagaatgggaggtaaaggacatgtcgaccctttttaccttcatgcaaaacgcatgtccaacttggacaggatgtcaccccagaagcggaagatgactcttggtgtatgttctgcagtctccattggtgttatagtcccagtttaaggtgtcgtcttccagcaaaagaaaagtgtttgtggatagatcatcatggtatttagtttcccccacaataatgctgcccttggagcttccatgtatgtagatggacctattgaattagagagcattaaatagctttcagtttttacttagctttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0132E21.2" temp_strand="-" temp_description="C06SLm0132E21.2  AC211087.2 htgs_phase:3 submitted_to_sgn_as:C06SLm0132E21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="112661" stop="108848"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112361" g_stop="112266" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="97" r_length="97" r_score="0.917"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112265" i_stop="109478" i_length="2788">
            <donor d_prob="0.996" d_score="0.90"/>
            <acceptor a_prob="0.999" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109477" g_stop="109147" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="428" r_length="331" r_score="0.903"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0132E21.2" gen_strand="-" ref_id="SGN-E695322" ref_strand="+">
        <total_alignment_score>0.906</total_alignment_score>
        <cumulative_length_of_scored_exons>427</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0132E21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E695322" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112361" e_stop="112266"/>
          <exon e_start="109477" e_stop="109147"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAGCGTCCATAGCAGGAAAACGAACAAAGGCAAGAGAACGGCGATGGCGTTGAACAACGG-TTTGCGTTCATGTGCATCCCTTATCTCCAAAACTGGTATTCTCATCTCGTAGAACTTATTTTTTCTATTATCATTTGTTCATTTGGTTTTTTTTTAAAACTGATTTATGATTATTGGAATGATATGAGTCGATTGATACAGAGCTGATCGATACTTACTTTTTAAAAAAAAATTGTTGTTGATTTATTGTTAATACTGAATGTTAAGCTGAAAATATGAACAAGAGAAGTCAATTTAGATTTCCGCTGCTGATTTAGGTATCGGTTTTTTAGATCTACCATTTTCTGGGGTATGCGCAATTGGCATATTTTTGTGGATCTGTTTGATGAAAAGTCAAATTAGATTTCCGCTGCTGATTTAGGTATTGCTTTTTCAGATCTACCCATTTTCTGGGGTATGCGCAATTGGCGTATTTTTGTGGATCTGTTTGATTTATAAGAACATAGGTATACATTTGTGATTATTCATATGTTATAGATATATCAATCTAATAGTAGGATTTAGTTCAATGTTCTTAGGAACGTCCGCCCCTTCTTGTCCATTCTTTGTTCATGTCTATCTGTTAGTTATTGTCGTTACCTTTACATAAAGTATGTGTCTTTCATGAGTTTTTGTAAAGCTTGGTTAGAATTATGAGATTTTGGAGTGCATCTAGTCTAAAATAGAATCTCAACTTTGTAATTAAGGACAAAAGATTGCATATTGGGATGAAATGGTCCTGGATATGGTGGTTCAGATAGTTGATTCATTGATATTGGGAGGCAGGATAGGTTGGGATTGTCATCCCTCAAACCATCCTTCAAATAAATGAGACTATTGTTACCAATTTATAGCAATTCTGTGCTTCTGGTCTTGTGGCGCATAGAGAGATGATACTTCACTGTTAATGTTGTGTGTTCCTCCTGTATGAATTATGATGCAAGACTGCTGGTTTCACAGTGCTGCAATGAGCCCTGTTCTCTCTAAAGTAATACGTTAGACTAAAATATGAGTAGAAACATCTAAAGATCATGACTTCTATAATAGAACCAAATAATAATTTCAGGTGGGCTATACGTACAGTATTTAGATTTGAGCATGAGGTCATATCTATCCATGTTATGCACAGTGGCTAGTTGTTGATATGTGGATAAATCAGCTATTTATGTAAGCCCCCTCTGTGAACTTGTGTAAAAGTTGGCAACAAGTAACATTAAGGATATTAAACAAGGTGCTCCATGTGAGTTTTTACCCTTAATAGTTCCTACTTTTTGGCTCATTGGCTGCTATACAGCACATATGCGCCTCAATATAAGAAGCTCTCTTATAATCTCCTGTTTTAAGTTTCATGCTTAATACAAGGGAATTTTATTCTCTTTTTTCTCTGTAACAACCGCTACTTCCATCTTATCCAAAATATCTACTTCTGATAGCTCTAGCTCTGGTCTCTTTGAGGTGATTTTATGTTCTTTATTGGCAAGGACAAAAGTACAATTATTATCATTGACATTCCAAGTTGAGCCCTGGTACATATAACTATTGTTGTTTTCAGCTTGCATGGAGCTACTTCCAAGATAAGAGGTTTGATGTAATTTTGGTCTAGAGTAGTCCATAAGGCTGGCTCTGGATGCTAGAACGGTGTATATATCTTATGGTGTCTTGTTTGGCCCACATGAATACCTTTTCGTTTATTTGCTTCTAAAACTTTTAAAGAAGGTTCATCAATATTTTGCATCAATCTGACCCTCAGGGGTTTGGTTTAGCGCTTTGAAAATATAACACGTGATGTCTGGGTTGGGCGCACGTCACCAGTTCAAACCCTTCCGCTAGCAAGAGGTATTTATGTGGGAGCAGGGTACTCCAAGTTCAAACTTGTGAGCCAGTTGGAGTTGGTCTAGCGAACCCACAGACCATTTCTCAATTATAAAAAAAAATGCATTAGTCTGATGCAAACTTGTCCAAAAAAGACTAAAAACGGCAAAATTCTCCCCATCCGTTGGAGCAAAATCTCAGATACTCTTTTGGTATTTGAACCTGCACCTTCTGAAATATGCTTGGCATTATCAAGTTGTTCCATCTCTTAAGAGCTTGTTGAGAAAATATTTTCACTTTATAGGTTTACTCATCCTGATGACTATTATCAACCATAAATCACAGTACTAGCCTAGGCCCTGCATTATGAACCTGGATGCATGAAATAGTCAGAATAGTTTGGTCGATCTTCTGAGCATTGTTCTTTTTGTGAAACATGTGATTATCAAAAAAAAATAAGAATGATAGTGCTATCTGCTGGAAATGCATTTGAGGGACATATCTTTAGGTCTATGTGAAAATTTTATAAATGCTTCAATTCTATGAATATACTGATGTCAAAGAGGGAGAGCGATGGATAGTGGGTTTTATCAATTCAAATCATTAACTCAAAAATTAATTAGTCAACCTTCTAATAATTTGAGGAACCCTCCCTGGTAGCTCTCCCTCCTCCTTTGTCGGACAAGCATACTTCCATCAGTTTGACAATCTTTTCATTGGAACAGTGTGGCAATTGAAACGTGTTTTTCTACGGCCTGCTTGAATGACTTCGAATTATTTATTATGCCAACTTCTTTCTTTATGCACAAGTTCAAACGTCTGTCTTAACCGTTACATTTCAAACATTCTTTGATACTTGTTTAGTTAATTATACATGTTTTGAAACTTCCATTTCTCTCATATTTCATTTCTAATTGTCTTTCATCTTACCGTTTCTTTATGAAAAGTTTATTTCAATCAAATTTGGATGCTGTTGTTCATGCTTTTTATAAGTCTGACCTTACTGATAATTGATATTTATTGTTTGGTCAGTGAAGAGAGAGTTCCACTCAACAGGCGTCAAGAGAATGGGAGGTCATGGACATGACGAACCTTTTTACATTCACGCAAAACACATGTACAACTTGGACAGGATGTCAAACCAGAAGCTGAAGATGACTCTTGGTGTCTGGTCTGCAGTCGCCATTGGTGTTATAGTCCCAGTTTATGCTGTCGTCTTCCAGCAAAAGAAAACTGCTTCTGGCTAGATCATCATGCTATTACGTCTCCACCACAATAATGCTGCCCTTGGAGCTTCCATGTATGAAGATGAACCTATTGAATTAGAGAGCATTAAATAGCTTTCAGTTTTGACTTAGCTTTA</genome_strand>
        <mrna_strand>CGAGGGTCCATAGCAGGAAAACGAAGAAAGGCAAGAGATCGGCGATGGCGTTGAACAACGGCTTGGTGTTCATGTGCATCCATTATCTCCAAAACTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAGAGAGAGTTCCCCTCAACATGTGTCAAGAGAATGGGAGGTAAAGGACATGTCGACCCTTTTTACCTTCATGCAAAACGCATGTCCAACTTGGACAGGATGTCACCCCAGAAGCGGAAGATGACTCTTGGTGTATGTTCTGCAGTCTCCATTGGTGTTATAGTCCCAGTTTAAGGTGTCGTCTTCCAGCAAAAGAAAAGTGTTTGTGGATAGATCATCATGGTATTTAGTTTCCCCCACAATAATGCTGCCCTTGGAGCTTCCATGTATGTAGATGGACCTATTGAATTAGAGAGCATTAAATAGCTTTCAGTTTTTACTTAGCTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E240380" ref_strand="+" ref_description="SGN-E240380 [cLED-25-B9]">
      <seq>caagcatacttccatcagtttgacaatcttttcattggaacagtgtggcaattgaaacgtgtttttctacggcctgcttgaatgacttcgaattatttattatgccaacttctttctttatgcacaagttcaaacgtctgtcttaaccgttacatttcaaacattctttgatacttgtttagttaattatacatgttttgaaacttccatttctctcatatttcatttctaattgtctttcatcttaccgtttctttatgaaaagtttatttcaatcaaatttggatgctgttgttcatgctttttataagtctgaccttactgataattgatatttattgtttggtcagtgaagagagagttccactcaacaggcgtcaagagaatgggaggtcatggacatgacgaacctttttacattcacgcaaaacacatgtacaacttggacaggatgtcaaaccagaagctgaagatgactcttggtgtctggtctgcagtcgccattggtgttatagtcccagtttatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0132E21.2" temp_strand="-" temp_description="C06SLm0132E21.2  AC211087.2 htgs_phase:3 submitted_to_sgn_as:C06SLm0132E21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="110127" stop="108999"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109827" g_stop="109299" g_length="529"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="529" r_length="529" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0132E21.2" gen_strand="-" ref_id="SGN-E240380" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>529</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0132E21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E240380" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109827" e_stop="109299"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGCATACTTCCATCAGTTTGACAATCTTTTCATTGGAACAGTGTGGCAATTGAAACGTGTTTTTCTACGGCCTGCTTGAATGACTTCGAATTATTTATTATGCCAACTTCTTTCTTTATGCACAAGTTCAAACGTCTGTCTTAACCGTTACATTTCAAACATTCTTTGATACTTGTTTAGTTAATTATACATGTTTTGAAACTTCCATTTCTCTCATATTTCATTTCTAATTGTCTTTCATCTTACCGTTTCTTTATGAAAAGTTTATTTCAATCAAATTTGGATGCTGTTGTTCATGCTTTTTATAAGTCTGACCTTACTGATAATTGATATTTATTGTTTGGTCAGTGAAGAGAGAGTTCCACTCAACAGGCGTCAAGAGAATGGGAGGTCATGGACATGACGAACCTTTTTACATTCACGCAAAACACATGTACAACTTGGACAGGATGTCAAACCAGAAGCTGAAGATGACTCTTGGTGTCTGGTCTGCAGTCGCCATTGGTGTTATAGTCCCAGTTTATGCT</genome_strand>
        <mrna_strand>CAAGCATACTTCCATCAGTTTGACAATCTTTTCATTGGAACAGTGTGGCAATTGAAACGTGTTTTTCTACGGCCTGCTTGAATGACTTCGAATTATTTATTATGCCAACTTCTTTCTTTATGCACAAGTTCAAACGTCTGTCTTAACCGTTACATTTCAAACATTCTTTGATACTTGTTTAGTTAATTATACATGTTTTGAAACTTCCATTTCTCTCATATTTCATTTCTAATTGTCTTTCATCTTACCGTTTCTTTATGAAAAGTTTATTTCAATCAAATTTGGATGCTGTTGTTCATGCTTTTTATAAGTCTGACCTTACTGATAATTGATATTTATTGTTTGGTCAGTGAAGAGAGAGTTCCACTCAACAGGCGTCAAGAGAATGGGAGGTCATGGACATGACGAACCTTTTTACATTCACGCAAAACACATGTACAACTTGGACAGGATGTCAAACCAGAAGCTGAAGATGACTCTTGGTGTCTGGTCTGCAGTCGCCATTGGTGTTATAGTCCCAGTTTATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E351581" ref_strand="+" ref_description="SGN-E351581 [cTOS-12-J17]">
      <seq>ttcctgctgtccacttcatgtgtatgcactcatttcatcagcgatgtcttggcgacaatgagaaagagtgccccgagtgtgctcccgagtacagagccgttctggaaacaaagagaagcttggaacaaagttccaaaaacccagaccagttcttccaacaagtcaagagctcaaaggatggattttccgtaattgctgattattttggcaaggggattatcagcaaaaccagcaacgggccttctgaagctaatggatcaaacagtgcttcttccggcaacgatttctagcgttttgtcatcacagtttttgagtactaaagttgttgagatctctccggctataaacaaagttcattgagctacatgttcagaagaatgtcatccatcctgtttggtgtttattaggccacttgtttcttttaaggttattgttgagctgcagttctacaactctctgtgaacaaaataaaattatgtgcagaagaacaatctgattgatttggataaaatctgcacaacaaaatgtattttgctgacattgattacaagtgggattagttggtattttaacaacatattattagtgtacttaataattaataatgcatcagcagctaattatttataaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0132E21.2" temp_strand="-" temp_description="C06SLm0132E21.2  AC211087.2 htgs_phase:3 submitted_to_sgn_as:C06SLm0132E21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="113615" stop="112387"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113315" g_stop="112679" g_length="637"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="637" r_length="637" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0132E21.2" gen_strand="-" ref_id="SGN-E351581" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>637</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0132E21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E351581" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113315" e_stop="112679"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCTGCTGTCCACTTCATGTGTATGCACTCATTTCATCAGCGATGTCTTGGCGACAATGAGAAAGAGTGCCCCGAGTGTGCTCCCGAGTACAGAGCCGTTCTGGAAACAAAGAGAAGCTTGGAACAAAGTTCCAAAAACCCAGACCAGTTCTTCCAACAAGTCAAGAGCTCAAAGGATGGATTTTCCGTAATTGCTGATTATTTTGGCAAGGGGATTATCAGCAAAACCAGCAACGGGCCTTCTGAAGCTAATGGATCAAACAGTGCTTCTTCCGGCAACGATTTCTAGCGTTTTGTCATCACAGTTTTTGAGTACTAAAGTTGTTGAGATCTCTCCGGCTATAAACAAAGTTCATTGAGCTACATGTTCAGAAGAATGTCATCCATCCTGTTTGGTGTTTATTAGGCCACTTGTTTCTTTTAAGGTTATTGTTGAGCTGCAGTTCTACAACTCTCTGTGAACAAAATAAAATTATGTGCAGAAGAACAATCTGATTGATTTGGATAAAATCTGCACAACAAAATGTATTTTGCTGACATTGATTACAAGTGGGATTAGTTGGTATTTTAACAACATATTATTAGTGTACTTAATAATTAATAATGCATCAGCAGCTAATTATTTATAGGGAAATT</genome_strand>
        <mrna_strand>TTCCTGCTGTCCACTTCATGTGTATGCACTCATTTCATCAGCGATGTCTTGGCGACAATGAGAAAGAGTGCCCCGAGTGTGCTCCCGAGTACAGAGCCGTTCTGGAAACAAAGAGAAGCTTGGAACAAAGTTCCAAAAACCCAGACCAGTTCTTCCAACAAGTCAAGAGCTCAAAGGATGGATTTTCCGTAATTGCTGATTATTTTGGCAAGGGGATTATCAGCAAAACCAGCAACGGGCCTTCTGAAGCTAATGGATCAAACAGTGCTTCTTCCGGCAACGATTTCTAGCGTTTTGTCATCACAGTTTTTGAGTACTAAAGTTGTTGAGATCTCTCCGGCTATAAACAAAGTTCATTGAGCTACATGTTCAGAAGAATGTCATCCATCCTGTTTGGTGTTTATTAGGCCACTTGTTTCTTTTAAGGTTATTGTTGAGCTGCAGTTCTACAACTCTCTGTGAACAAAATAAAATTATGTGCAGAAGAACAATCTGATTGATTTGGATAAAATCTGCACAACAAAATGTATTTTGCTGACATTGATTACAAGTGGGATTAGTTGGTATTTTAACAACATATTATTAGTGTACTTAATAATTAATAATGCATCAGCAGCTAATTATTTATAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E353593" ref_strand="+" ref_description="SGN-E353593 [cTOS-15-H16]">
      <seq>ttcctgctgtccacttcatgtgtatgcactcatttcatcagcgatgtcttggcgacaatgagaaagagtgccccgagtgtgctcccgagtacagagccgttctggaaacaaagagaagcttggaacaaagttccaaaaacccagaccagttcttccaacaagtcaagagctcaaaggatggattttccgtaattgctgattattttggcaaggggattatcagcaaaaccagcaacgggccttctgaagctaatggatcaaacagtgcttcttccggcaacgatttctagcgttttgtcatcacagtttttgagtactaaagttgttgagatctctccggctataaacaaagttcattgagctacatgttcagaagaatgtcatccatcctgtttggtgtttattaggccacttgtttcttttaaggttattgttgagctgcagttctacaactctctgtgaacaaaataaaattatgtgcagaagaacaatctgattgatttggataaaatctgcacaacaaaatgtattttgctgacattgattacaagtgggattagttggtattttaacaacatattattagtgtacttaataattaataatgcatcagcagctaattattta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0132E21.2" temp_strand="-" temp_description="C06SLm0132E21.2  AC211087.2 htgs_phase:3 submitted_to_sgn_as:C06SLm0132E21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="113615" stop="112389"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113315" g_stop="112689" g_length="627"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="627" r_length="627" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0132E21.2" gen_strand="-" ref_id="SGN-E353593" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>627</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0132E21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E353593" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113315" e_stop="112689"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCTGCTGTCCACTTCATGTGTATGCACTCATTTCATCAGCGATGTCTTGGCGACAATGAGAAAGAGTGCCCCGAGTGTGCTCCCGAGTACAGAGCCGTTCTGGAAACAAAGAGAAGCTTGGAACAAAGTTCCAAAAACCCAGACCAGTTCTTCCAACAAGTCAAGAGCTCAAAGGATGGATTTTCCGTAATTGCTGATTATTTTGGCAAGGGGATTATCAGCAAAACCAGCAACGGGCCTTCTGAAGCTAATGGATCAAACAGTGCTTCTTCCGGCAACGATTTCTAGCGTTTTGTCATCACAGTTTTTGAGTACTAAAGTTGTTGAGATCTCTCCGGCTATAAACAAAGTTCATTGAGCTACATGTTCAGAAGAATGTCATCCATCCTGTTTGGTGTTTATTAGGCCACTTGTTTCTTTTAAGGTTATTGTTGAGCTGCAGTTCTACAACTCTCTGTGAACAAAATAAAATTATGTGCAGAAGAACAATCTGATTGATTTGGATAAAATCTGCACAACAAAATGTATTTTGCTGACATTGATTACAAGTGGGATTAGTTGGTATTTTAACAACATATTATTAGTGTACTTAATAATTAATAATGCATCAGCAGCTAATTATTTA</genome_strand>
        <mrna_strand>TTCCTGCTGTCCACTTCATGTGTATGCACTCATTTCATCAGCGATGTCTTGGCGACAATGAGAAAGAGTGCCCCGAGTGTGCTCCCGAGTACAGAGCCGTTCTGGAAACAAAGAGAAGCTTGGAACAAAGTTCCAAAAACCCAGACCAGTTCTTCCAACAAGTCAAGAGCTCAAAGGATGGATTTTCCGTAATTGCTGATTATTTTGGCAAGGGGATTATCAGCAAAACCAGCAACGGGCCTTCTGAAGCTAATGGATCAAACAGTGCTTCTTCCGGCAACGATTTCTAGCGTTTTGTCATCACAGTTTTTGAGTACTAAAGTTGTTGAGATCTCTCCGGCTATAAACAAAGTTCATTGAGCTACATGTTCAGAAGAATGTCATCCATCCTGTTTGGTGTTTATTAGGCCACTTGTTTCTTTTAAGGTTATTGTTGAGCTGCAGTTCTACAACTCTCTGTGAACAAAATAAAATTATGTGCAGAAGAACAATCTGATTGATTTGGATAAAATCTGCACAACAAAATGTATTTTGCTGACATTGATTACAAGTGGGATTAGTTGGTATTTTAACAACATATTATTAGTGTACTTAATAATTAATAATGCATCAGCAGCTAATTATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E353471" ref_strand="+" ref_description="SGN-E353471 [cTOS-15-I17]">
      <seq>ttcctgctgtccacttcatgtgtatgcactcatttcatcagcgatgtcttggcgacaatgagaaagagtgccccgagtgtgctcccgagtacagagccgttctggaaacaaagagaagcttggaacaaagttccaaaaacccagaccagttcttccaacaagtcaagagctcaaaggatggattttccgtaattgctgattattttggcaaggggattatcagcaaaaccagcaacgggccttctgaagctaatggatcaaacagtgcttcttccggcaacgatttctagcgttttgtcatcacagtttttgagtactagagttgttgagatctctccggctataaacaaagttcattgagctacatgttcagaagaatgtcatccatcctgtttggtgtttattaggccacttgtttcttttaaggttattgttgagctgcagttctacaactctctgtgaacaaaatataattatgtgcagaagaacaatctgattgatttggataaaatctgcacaacaaaatgtattttgctgacattgattacaagtgggattagttggtattttaacaacatattattagtgtacttaataattaataatgcatcagcagctaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0132E21.2" temp_strand="-" temp_description="C06SLm0132E21.2  AC211087.2 htgs_phase:3 submitted_to_sgn_as:C06SLm0132E21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="113615" stop="112394"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113315" g_stop="112694" g_length="622"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="622" r_length="622" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0132E21.2" gen_strand="-" ref_id="SGN-E353471" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>622</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0132E21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E353471" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113315" e_stop="112694"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCTGCTGTCCACTTCATGTGTATGCACTCATTTCATCAGCGATGTCTTGGCGACAATGAGAAAGAGTGCCCCGAGTGTGCTCCCGAGTACAGAGCCGTTCTGGAAACAAAGAGAAGCTTGGAACAAAGTTCCAAAAACCCAGACCAGTTCTTCCAACAAGTCAAGAGCTCAAAGGATGGATTTTCCGTAATTGCTGATTATTTTGGCAAGGGGATTATCAGCAAAACCAGCAACGGGCCTTCTGAAGCTAATGGATCAAACAGTGCTTCTTCCGGCAACGATTTCTAGCGTTTTGTCATCACAGTTTTTGAGTACTAAAGTTGTTGAGATCTCTCCGGCTATAAACAAAGTTCATTGAGCTACATGTTCAGAAGAATGTCATCCATCCTGTTTGGTGTTTATTAGGCCACTTGTTTCTTTTAAGGTTATTGTTGAGCTGCAGTTCTACAACTCTCTGTGAACAAAATAAAATTATGTGCAGAAGAACAATCTGATTGATTTGGATAAAATCTGCACAACAAAATGTATTTTGCTGACATTGATTACAAGTGGGATTAGTTGGTATTTTAACAACATATTATTAGTGTACTTAATAATTAATAATGCATCAGCAGCTAATT</genome_strand>
        <mrna_strand>TTCCTGCTGTCCACTTCATGTGTATGCACTCATTTCATCAGCGATGTCTTGGCGACAATGAGAAAGAGTGCCCCGAGTGTGCTCCCGAGTACAGAGCCGTTCTGGAAACAAAGAGAAGCTTGGAACAAAGTTCCAAAAACCCAGACCAGTTCTTCCAACAAGTCAAGAGCTCAAAGGATGGATTTTCCGTAATTGCTGATTATTTTGGCAAGGGGATTATCAGCAAAACCAGCAACGGGCCTTCTGAAGCTAATGGATCAAACAGTGCTTCTTCCGGCAACGATTTCTAGCGTTTTGTCATCACAGTTTTTGAGTACTAGAGTTGTTGAGATCTCTCCGGCTATAAACAAAGTTCATTGAGCTACATGTTCAGAAGAATGTCATCCATCCTGTTTGGTGTTTATTAGGCCACTTGTTTCTTTTAAGGTTATTGTTGAGCTGCAGTTCTACAACTCTCTGTGAACAAAATATAATTATGTGCAGAAGAACAATCTGATTGATTTGGATAAAATCTGCACAACAAAATGTATTTTGCTGACATTGATTACAAGTGGGATTAGTTGGTATTTTAACAACATATTATTAGTGTACTTAATAATTAATAATGCATCAGCAGCTAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E689197" ref_strand="+" ref_description="SGN-E689197 [t3_tus_80_I13]">
      <seq>aagaatcatcaataatgagaaaagagatccaggatctaagaacaaatgctagaatatttcagcttagcaagtgtactacttgcacattcaccctagaccttcctgctgtccacttcatgtgtatgcactcatttcatcagcgatgtcttggcgacaatgagaaagagtgccccgagtgtgctcccgagtacagagccgttctggaaacaaagagaagcttggaacaaagttccaaaaacccagaccagttcttccaacaagtcaagagctcaaaggatggattttccgtaattgctgattattttggcaaggggattatcagcaaaaccagcaacgggccttctgaagctaatggatcaaacagtgcttcttccggcaacgatttctagcgttttgtcatcacagtttttgagtactaaagttgttgagatctctccggctatnaacaaagttcattgagctacatgttcagaagaatgtcatccatcctgtttggtgtttattaggccacttgtttcttttaaggttattgttgagctgcagttctacaactctctgtgaacaaaataaaattatgtgcagaagaacaatctgattgatttggataaaatctgcacaacaaaatgtattttgctgacattgattacaagtgggattagttggtattttaacaacatattattagtgtacttaataaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0132E21.2" temp_strand="-" temp_description="C06SLm0132E21.2  AC211087.2 htgs_phase:3 submitted_to_sgn_as:C06SLm0132E21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="113714" stop="112411"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113414" g_stop="112709" g_length="706"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="706" r_length="706" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0132E21.2" gen_strand="-" ref_id="SGN-E689197" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>706</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0132E21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E689197" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113414" e_stop="112709"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAATCATCAATAATGAGAAAAGAGATCCAGGATCTAAGAACAAATGCTAGAATATTTCAGCTTAGCAAGTGTACTACTTGCACATTCACCCTAGACCTTCCTGCTGTCCACTTCATGTGTATGCACTCATTTCATCAGCGATGTCTTGGCGACAATGAGAAAGAGTGCCCCGAGTGTGCTCCCGAGTACAGAGCCGTTCTGGAAACAAAGAGAAGCTTGGAACAAAGTTCCAAAAACCCAGACCAGTTCTTCCAACAAGTCAAGAGCTCAAAGGATGGATTTTCCGTAATTGCTGATTATTTTGGCAAGGGGATTATCAGCAAAACCAGCAACGGGCCTTCTGAAGCTAATGGATCAAACAGTGCTTCTTCCGGCAACGATTTCTAGCGTTTTGTCATCACAGTTTTTGAGTACTAAAGTTGTTGAGATCTCTCCGGCTATAAACAAAGTTCATTGAGCTACATGTTCAGAAGAATGTCATCCATCCTGTTTGGTGTTTATTAGGCCACTTGTTTCTTTTAAGGTTATTGTTGAGCTGCAGTTCTACAACTCTCTGTGAACAAAATAAAATTATGTGCAGAAGAACAATCTGATTGATTTGGATAAAATCTGCACAACAAAATGTATTTTGCTGACATTGATTACAAGTGGGATTAGTTGGTATTTTAACAACATATTATTAGTGTACTTAATAATTAATAATG</genome_strand>
        <mrna_strand>AAGAATCATCAATAATGAGAAAAGAGATCCAGGATCTAAGAACAAATGCTAGAATATTTCAGCTTAGCAAGTGTACTACTTGCACATTCACCCTAGACCTTCCTGCTGTCCACTTCATGTGTATGCACTCATTTCATCAGCGATGTCTTGGCGACAATGAGAAAGAGTGCCCCGAGTGTGCTCCCGAGTACAGAGCCGTTCTGGAAACAAAGAGAAGCTTGGAACAAAGTTCCAAAAACCCAGACCAGTTCTTCCAACAAGTCAAGAGCTCAAAGGATGGATTTTCCGTAATTGCTGATTATTTTGGCAAGGGGATTATCAGCAAAACCAGCAACGGGCCTTCTGAAGCTAATGGATCAAACAGTGCTTCTTCCGGCAACGATTTCTAGCGTTTTGTCATCACAGTTTTTGAGTACTAAAGTTGTTGAGATCTCTCCGGCTATNAACAAAGTTCATTGAGCTACATGTTCAGAAGAATGTCATCCATCCTGTTTGGTGTTTATTAGGCCACTTGTTTCTTTTAAGGTTATTGTTGAGCTGCAGTTCTACAACTCTCTGTGAACAAAATAAAATTATGTGCAGAAGAACAATCTGATTGATTTGGATAAAATCTGCACAACAAAATGTATTTTGCTGACATTGATTACAAGTGGGATTAGTTGGTATTTTAACAACATATTATTAGTGTACTTAATAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E737144" ref_strand="+" ref_description="SGN-E737144 [LC08CE09]">
      <seq>gtactacttgcacattcaccctagaccttcctgctgtccacttcatgtgtatgcactcatttcatcagcgatgtcttggcgacaatgagaaagagtgccccgagtgtgctcccgagtacagagccgttctggaaacaaagagaagcttggaacaaagttccaaaaacccagaccagttcttccaacaagtcaagagctcaaaggatggattttccgtaattgctgattattttggcaaggggattatcagcaaaaccagcaacgggccttctgaagctaatggatcaaacagtgcttcttccggcaacgatttctagcgttttgtcatcacagtttttgagtactaaagttgttgagatctctccggctataaacaaagttcattgagctacatgttcagaagaatgtcatccatcctgtttggtgtttattaggccacttgtttcttttaaggttattgttgagctgcagttctacaactctctgtgaacaaaataaaattatgtgcagaagaacaatctgattgatttggataaaatctgcacaacaaaatgtattttgctgacattgattacaagtgggattagttggtattttgacaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0132E21.2" temp_strand="-" temp_description="C06SLm0132E21.2  AC211087.2 htgs_phase:3 submitted_to_sgn_as:C06SLm0132E21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="113642" stop="112437"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113342" g_stop="112733" g_length="610"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="610" r_length="610" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0132E21.2" gen_strand="-" ref_id="SGN-E737144" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>610</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0132E21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E737144" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113342" e_stop="112733"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTACTACTTGCACATTCACCCTAGACCTTCCTGCTGTCCACTTCATGTGTATGCACTCATTTCATCAGCGATGTCTTGGCGACAATGAGAAAGAGTGCCCCGAGTGTGCTCCCGAGTACAGAGCCGTTCTGGAAACAAAGAGAAGCTTGGAACAAAGTTCCAAAAACCCAGACCAGTTCTTCCAACAAGTCAAGAGCTCAAAGGATGGATTTTCCGTAATTGCTGATTATTTTGGCAAGGGGATTATCAGCAAAACCAGCAACGGGCCTTCTGAAGCTAATGGATCAAACAGTGCTTCTTCCGGCAACGATTTCTAGCGTTTTGTCATCACAGTTTTTGAGTACTAAAGTTGTTGAGATCTCTCCGGCTATAAACAAAGTTCATTGAGCTACATGTTCAGAAGAATGTCATCCATCCTGTTTGGTGTTTATTAGGCCACTTGTTTCTTTTAAGGTTATTGTTGAGCTGCAGTTCTACAACTCTCTGTGAACAAAATAAAATTATGTGCAGAAGAACAATCTGATTGATTTGGATAAAATCTGCACAACAAAATGTATTTTGCTGACATTGATTACAAGTGGGATTAGTTGGTATTTTAACAACATATTAT</genome_strand>
        <mrna_strand>GTACTACTTGCACATTCACCCTAGACCTTCCTGCTGTCCACTTCATGTGTATGCACTCATTTCATCAGCGATGTCTTGGCGACAATGAGAAAGAGTGCCCCGAGTGTGCTCCCGAGTACAGAGCCGTTCTGGAAACAAAGAGAAGCTTGGAACAAAGTTCCAAAAACCCAGACCAGTTCTTCCAACAAGTCAAGAGCTCAAAGGATGGATTTTCCGTAATTGCTGATTATTTTGGCAAGGGGATTATCAGCAAAACCAGCAACGGGCCTTCTGAAGCTAATGGATCAAACAGTGCTTCTTCCGGCAACGATTTCTAGCGTTTTGTCATCACAGTTTTTGAGTACTAAAGTTGTTGAGATCTCTCCGGCTATAAACAAAGTTCATTGAGCTACATGTTCAGAAGAATGTCATCCATCCTGTTTGGTGTTTATTAGGCCACTTGTTTCTTTTAAGGTTATTGTTGAGCTGCAGTTCTACAACTCTCTGTGAACAAAATAAAATTATGTGCAGAAGAACAATCTGATTGATTTGGATAAAATCTGCACAACAAAATGTATTTTGCTGACATTGATTACAAGTGGGATTAGTTGGTATTTTGACAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E323368" ref_strand="+" ref_description="SGN-E323368 [cTOC-10-G5]">
      <seq>agaatcatcaataatgagaaaagagatccaggatctaagagcaaagggtagaatatttcagcttagcaagtgtactacttgcacattcaccctagaccttcctgctgtccacttcatgtgtatgcactcatttcatcagcgatgtcttggcgacaatgagaaagagtgccccgagtgtgctcccgagtacagagccgttctggaaacaaagagaagcttggaacaaagttccaaaaacccagaccagttcttccaacaagtcaagagctcaaaggatggattttccgtaattgctgattattttggcaaggggattatcagcaaaaccagcaacgggccttctgaagctaatggatcaaacagtgcttcttccggcaacgatttctagcgttttgtcatcacagtttttgagtactaaagttgttgagatctctccggctataaacaaagttcattgagctacatgttcagaagaatgtcatccatcctgtttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0132E21.2" temp_strand="-" temp_description="C06SLm0132E21.2  AC211087.2 htgs_phase:3 submitted_to_sgn_as:C06SLm0132E21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="113713" stop="112620"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113413" g_stop="112920" g_length="494"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="494" r_length="494" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0132E21.2" gen_strand="-" ref_id="SGN-E323368" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>494</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0132E21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E323368" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113413" e_stop="112920"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATCATCAATAATGAGAAAAGAGATCCAGGATCTAAGAACAAATGCTAGAATATTTCAGCTTAGCAAGTGTACTACTTGCACATTCACCCTAGACCTTCCTGCTGTCCACTTCATGTGTATGCACTCATTTCATCAGCGATGTCTTGGCGACAATGAGAAAGAGTGCCCCGAGTGTGCTCCCGAGTACAGAGCCGTTCTGGAAACAAAGAGAAGCTTGGAACAAAGTTCCAAAAACCCAGACCAGTTCTTCCAACAAGTCAAGAGCTCAAAGGATGGATTTTCCGTAATTGCTGATTATTTTGGCAAGGGGATTATCAGCAAAACCAGCAACGGGCCTTCTGAAGCTAATGGATCAAACAGTGCTTCTTCCGGCAACGATTTCTAGCGTTTTGTCATCACAGTTTTTGAGTACTAAAGTTGTTGAGATCTCTCCGGCTATAAACAAAGTTCATTGAGCTACATGTTCAGAAGAATGTCATCCATCCTGTTTG</genome_strand>
        <mrna_strand>AGAATCATCAATAATGAGAAAAGAGATCCAGGATCTAAGAGCAAAGGGTAGAATATTTCAGCTTAGCAAGTGTACTACTTGCACATTCACCCTAGACCTTCCTGCTGTCCACTTCATGTGTATGCACTCATTTCATCAGCGATGTCTTGGCGACAATGAGAAAGAGTGCCCCGAGTGTGCTCCCGAGTACAGAGCCGTTCTGGAAACAAAGAGAAGCTTGGAACAAAGTTCCAAAAACCCAGACCAGTTCTTCCAACAAGTCAAGAGCTCAAAGGATGGATTTTCCGTAATTGCTGATTATTTTGGCAAGGGGATTATCAGCAAAACCAGCAACGGGCCTTCTGAAGCTAATGGATCAAACAGTGCTTCTTCCGGCAACGATTTCTAGCGTTTTGTCATCACAGTTTTTGAGTACTAAAGTTGTTGAGATCTCTCCGGCTATAAACAAAGTTCATTGAGCTACATGTTCAGAAGAATGTCATCCATCCTGTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E271427" ref_strand="+" ref_description="SGN-E271427 [cLEM-5-D19]">
      <seq>aatgatctagcacataaatcttcaaaatcagtatctaatgggagggctatatcgaacaagaaagacgtaaatgatgagaaaggtcgtcaagagcgacgtcggaaggggctgaccttgcttaagagtgcatggccttctgaactagaacaaccactatatgacgttgatcttgtcataattttatgcgagatgaatgactttaaagaaggattgttgtttctgtatgagaagatgaaacttttcaaagaagttattgcatgctacatgcaggtacatgatcatgaaggtttgatttcatgctgcaagagattgggtgatttgggtaaggggggtgacccttctctttgggcagatttgttgaagtattttggtgaacttggagaagactgctcaaaagaagtcaaagaaatcctgacatacattgagaggggtgatatcttgcctcccattgtggttcttcagacacttgctaaaaacccgtgcctctctctctcagttatcaaagattacata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0132E21.2" temp_strand="-" temp_description="C06SLm0132E21.2  AC211087.2 htgs_phase:3 submitted_to_sgn_as:C06SLm0132E21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="116266" stop="115154"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115966" g_stop="115454" g_length="513"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="513" r_length="513" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0132E21.2" gen_strand="-" ref_id="SGN-E271427" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>513</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0132E21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E271427" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115966" e_stop="115454"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGATCTAGCACATAAATCTTCAAAATCAGTATCTAATGGGAGGGCTATATCGAACAAGAAAGACGTAAATGATGAGAAAGGTCGTCAAGAGCGACGTCGGAAGGGGCTGACCTTGCTTAAGAGTGCATGGCCTTCTGAACTAGAACAACCACTATATGACGTTGATCTTGTCATAATTTTATGCGAGATGAATGACTTTAAAGAAGGATTGTTGTTTCTGTATGAGAAGATGAAACTTTTCAAAGAAGTTATTGCATGCTACATGCAGGTACATGATCATGAAGGTTTGATTTCATGCTGCAAGAGATTGGGTGATTTGGGTAAGGGGGGTGACCCTTCTCTTTGGGCAGATTTGTTGAAGTATTTTGGTGAACTTGGAGAAGACTGCTCAAAAGAAGTCAAAGAAATCCTGACATACATTGAGAGGGGTGATATCTTGCCTCCCATTGTGGTTCTTCAGACACTTGCTAAAAACCCGTGCCTCTCTCTCTCAGTTATCAAAGATTACATA</genome_strand>
        <mrna_strand>AATGATCTAGCACATAAATCTTCAAAATCAGTATCTAATGGGAGGGCTATATCGAACAAGAAAGACGTAAATGATGAGAAAGGTCGTCAAGAGCGACGTCGGAAGGGGCTGACCTTGCTTAAGAGTGCATGGCCTTCTGAACTAGAACAACCACTATATGACGTTGATCTTGTCATAATTTTATGCGAGATGAATGACTTTAAAGAAGGATTGTTGTTTCTGTATGAGAAGATGAAACTTTTCAAAGAAGTTATTGCATGCTACATGCAGGTACATGATCATGAAGGTTTGATTTCATGCTGCAAGAGATTGGGTGATTTGGGTAAGGGGGGTGACCCTTCTCTTTGGGCAGATTTGTTGAAGTATTTTGGTGAACTTGGAGAAGACTGCTCAAAAGAAGTCAAAGAAATCCTGACATACATTGAGAGGGGTGATATCTTGCCTCCCATTGTGGTTCTTCAGACACTTGCTAAAAACCCGTGCCTCTCTCTCTCAGTTATCAAAGATTACATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E272243" ref_strand="+" ref_description="SGN-E272243 [cLEM-19-G14]">
      <seq>aatgatctagcacataaatcttcaaaatcagtatctaatgggagggctatatcgaacaagaaagacgtaaatgatgagaaaggtcgtcaagagcgacgtcggaaggggctgaccttgcttaagagtgcatggccttctgaactagaacaaccactatatgacgttgatcttgtcataattttatgcgagatgaatgactttaaagaaggattgttgtttctgtatgagaagatgaaacttttcaaagaagttattgcatgctacatgcaggtacatgatcatgaaggtttgatttcatgctgcaagagattgggtgatttgggtaaggggggtgacccttctctttgggcagatttgttgaagtattttggtgaacttggagaagactgctcaaaagaagtcaaagaaatcctgacatacattga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0132E21.2" temp_strand="-" temp_description="C06SLm0132E21.2  AC211087.2 htgs_phase:3 submitted_to_sgn_as:C06SLm0132E21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="116266" stop="115242"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115966" g_stop="115542" g_length="425"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="425" r_length="425" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0132E21.2" gen_strand="-" ref_id="SGN-E272243" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>425</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0132E21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E272243" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115966" e_stop="115542"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGATCTAGCACATAAATCTTCAAAATCAGTATCTAATGGGAGGGCTATATCGAACAAGAAAGACGTAAATGATGAGAAAGGTCGTCAAGAGCGACGTCGGAAGGGGCTGACCTTGCTTAAGAGTGCATGGCCTTCTGAACTAGAACAACCACTATATGACGTTGATCTTGTCATAATTTTATGCGAGATGAATGACTTTAAAGAAGGATTGTTGTTTCTGTATGAGAAGATGAAACTTTTCAAAGAAGTTATTGCATGCTACATGCAGGTACATGATCATGAAGGTTTGATTTCATGCTGCAAGAGATTGGGTGATTTGGGTAAGGGGGGTGACCCTTCTCTTTGGGCAGATTTGTTGAAGTATTTTGGTGAACTTGGAGAAGACTGCTCAAAAGAAGTCAAAGAAATCCTGACATACATTGA</genome_strand>
        <mrna_strand>AATGATCTAGCACATAAATCTTCAAAATCAGTATCTAATGGGAGGGCTATATCGAACAAGAAAGACGTAAATGATGAGAAAGGTCGTCAAGAGCGACGTCGGAAGGGGCTGACCTTGCTTAAGAGTGCATGGCCTTCTGAACTAGAACAACCACTATATGACGTTGATCTTGTCATAATTTTATGCGAGATGAATGACTTTAAAGAAGGATTGTTGTTTCTGTATGAGAAGATGAAACTTTTCAAAGAAGTTATTGCATGCTACATGCAGGTACATGATCATGAAGGTTTGATTTCATGCTGCAAGAGATTGGGTGATTTGGGTAAGGGGGGTGACCCTTCTCTTTGGGCAGATTTGTTGAAGTATTTTGGTGAACTTGGAGAAGACTGCTCAAAAGAAGTCAAAGAAATCCTGACATACATTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E271267" ref_strand="+" ref_description="SGN-E271267 [cLEM-5-D21]">
      <seq>aatgatctagcacataaatcttcaaaatcagtatctaatgggagggctatatcgaacaagaaagacgtaaatgatgagaaaggtcgtcaagagcgacgtcggaaggggctgaccttgcttaagagtgcatggccttctgaactagaacaaccactatatgacgttgatcttgacataattttatgcgagatgaagtgactttaaagaacgattgttgcttctgtatgagaagatgaaacttttcaaagaagttattgcatgctacatgcaggtacatgatcatgaaggtttgatttcatgctgcatgagattgggtgattcgggtaaagggggtgacccttctctttgggcagattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0132E21.2" temp_strand="-" temp_description="C06SLm0132E21.2  AC211087.2 htgs_phase:3 submitted_to_sgn_as:C06SLm0132E21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="116266" stop="115311"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115966" g_stop="115611" g_length="356"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="357" r_length="357" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0132E21.2" gen_strand="-" ref_id="SGN-E271267" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>356</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0132E21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E271267" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115966" e_stop="115611"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGATCTAGCACATAAATCTTCAAAATCAGTATCTAATGGGAGGGCTATATCGAACAAGAAAGACGTAAATGATGAGAAAGGTCGTCAAGAGCGACGTCGGAAGGGGCTGACCTTGCTTAAGAGTGCATGGCCTTCTGAACTAGAACAACCACTATATGACGTTGATCTTGTCATAATTTTATGCGAGATGAA-TGACTTTAAAGAAGGATTGTTGTTTCTGTATGAGAAGATGAAACTTTTCAAAGAAGTTATTGCATGCTACATGCAGGTACATGATCATGAAGGTTTGATTTCATGCTGCAAGAGATTGGGTGATTTGGGTAAGGGGGGTGACCCTTCTCTTTGGGCAGATTT</genome_strand>
        <mrna_strand>AATGATCTAGCACATAAATCTTCAAAATCAGTATCTAATGGGAGGGCTATATCGAACAAGAAAGACGTAAATGATGAGAAAGGTCGTCAAGAGCGACGTCGGAAGGGGCTGACCTTGCTTAAGAGTGCATGGCCTTCTGAACTAGAACAACCACTATATGACGTTGATCTTGACATAATTTTATGCGAGATGAAGTGACTTTAAAGAACGATTGTTGCTTCTGTATGAGAAGATGAAACTTTTCAAAGAAGTTATTGCATGCTACATGCAGGTACATGATCATGAAGGTTTGATTTCATGCTGCATGAGATTGGGTGATTCGGGTAAAGGGGGTGACCCTTCTCTTTGGGCAGATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E243101" ref_strand="+" ref_description="SGN-E243101 [cLEE-2-C1]">
      <seq>caaattacatatcctcaacaacaacacttcaacaaattacatatcctcaacaagaatagttcaacaaattatatatccgccataacaagctcaatattaatcaatcacaagttctgcagaaaggcaataagaagatcgagaaaatacgatatcaagttcactaatgataagtgtgtaatgcaatggaatgcaatgtcaagtataatgatgcatgtctgacctagtgatatacacccgctgtctctcagtccgggacccttgggggacatatctgtccatgcatctgtcgcggcgcacgacacgatcctcgataatagtaaccatcacggcgcgcgatacgttcctcgaaatatagtatccatcgcggcgcgcgatacgtccctcgaaatggtacatcctcttaagtacccattatttctcaatgcacataacacttgccacaaccaatgcctcagaataatgcagatgacaagttcacacatataatgaggagatgaccattttcataacatcctacagttcacaaccacacaaacatcaagttacatcaacaatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0132E21-W4afj/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLm0132E21.2" temp_strand="+" temp_description="C06SLm0132E21.2  AC211087.2 htgs_phase:3 submitted_to_sgn_as:C06SLm0132E21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="133277" stop="134434"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="133577" g_stop="134134" g_length="558"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="557" r_length="557" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0132E21.2" gen_strand="+" ref_id="SGN-E243101" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0132E21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E243101" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="133577" e_stop="134134"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATTACATATTCTCAACAACAACACTTTAACAAATTACATACCCTCAACAACAATACTTCAACAAATTACATATCCGCAATAACAAGCTCAATATTGATCTATCACAAGTTCCACAG-GAGGCAATCAGAAGATCAGCAAAACACGATATCAAGTTCACTAATAATAAGTATGTGCAATGCAATGGAATGCAATGTCAAGTATAATGATGCATGTCTGACCTAGTGATACACACCCGCTGTCTCTCAGTCCGGGACCCATGGGGGACATATCTGTCCATGCATCTGTCACGGCGCACGACACGACCCTCGATAATAGTAACCATCGCGGCACGCGATACGTCCCTCGAAATATAGTATCCATCGCGGCGCGCGATACGTCCCTCGAAATGGTACATCCTCTTAAGTACCCATTCTTTCTCAATGCACATAACACTTGTCCCAACCAATGCCTCAGAATAATGTAGATGACAAGTTCACACATATAATGAGGAGATGACCATTTCCATAACATCACACAGTTCACAACCACACAAACATGAAGTTACATCAACAATGA</genome_strand>
        <mrna_strand>CAAATTACATATCCTCAACAACAACACTTCAACAAATTACATATCCTCAACAAGAATAGTTCAACAAATTATATATCCGCCATAACAAGCTCAATATTAATCAATCACAAGTTCTGCAGAAAGGCAATAAGAAGATCGAGAAAATACGATATCAAGTTCACTAATGATAAG--TGTGTAATGCAATGGAATGCAATGTCAAGTATAATGATGCATGTCTGACCTAGTGATATACACCCGCTGTCTCTCAGTCCGGGACCCTTGGGGGACATATCTGTCCATGCATCTGTCGCGGCGCACGACACGATCCTCGATAATAGTAACCATCACGGCGCGCGATACGTTCCTCGAAATATAGTATCCATCGCGGCGCGCGATACGTCCCTCGAAATGGTACATCCTCTTAAGTACCCATTATTTCTCAATGCACATAACACTTGCCACAACCAATGCCTCAGAATAATGCAGATGACAAGTTCACACATATAATGAGGAGATGACCATTTTCATAACATCCTACAGTTCACAACCACACAAACATCAAGTTACATCAACAATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>160</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="9271" PGL_stop="14258"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="9271" e_stop="9375"/>
            <exon e_start="9912" e_stop="10142"/>
            <exon e_start="11758" e_stop="12159"/>
            <exon e_start="13229" e_stop="14258"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.865" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.226" e_score="0.993"/>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="9271" e_stop="9375" e_length="105"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.985">
            <gDNA_intron_boundary i_start="9376" i_stop="9911" i_length="536"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="9912" e_stop="10142" e_length="231"/>
          </exon>
          <intron i_serial="2" don_prob="0.865" acc_prob="0.000">
            <gDNA_intron_boundary i_start="10143" i_stop="11757" i_length="1615"/>
          </intron>
          <exon e_serial="3" e_score="0.993">
            <gDNA_exon_boundary e_start="11758" e_stop="12159" e_length="402"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.226">
            <gDNA_intron_boundary i_start="12160" i_stop="13228" i_length="1069"/>
          </intron>
          <exon e_serial="4" e_score="0.987">
            <gDNA_exon_boundary e_start="13229" e_stop="14258" e_length="1030"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9271" stop="9375"/>
              <exon start="9912" stop="10142"/>
              <exon start="11758" stop="12159"/>
              <exon start="13229" stop="13366"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703589" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11858" stop="12098"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233613" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11860" stop="12159"/>
              <exon start="13229" stop="13485"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236446" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11860" stop="12159"/>
              <exon start="13229" stop="13484"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232832" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11860" stop="12159"/>
              <exon start="13229" stop="13481"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236184" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11860" stop="12159"/>
              <exon start="13229" stop="13471"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E376880" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11860" stop="12159"/>
              <exon start="13229" stop="13469"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231130" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11860" stop="12159"/>
              <exon start="13229" stop="13456"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230943" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11893" stop="12159"/>
              <exon start="13229" stop="13656"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275611" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13589" stop="14258"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E376879" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGTTGATATGTTTTGTGTCTTTGACGGCTTCTCGAGCTACTGGTAGTGTGATTTTGATTGGAAATAACAGGACTTTGTCTTTTGAAGATATTGAAGCTAATTTTG : CTCCCTCACCAAAGGGTTCAGGAAAATGTGGGAGGTTGTATATTGCGGAGCCTTTGGATGCCTGCTCAACCTTGACTAACAAGATTGAACCAACTAATAACTTCACAAAAGAACCATTTGTTCTGATAATCAGGGGTGGATGTAGCTTTGAAGATAAAGTTAGAAAAGCACAAGCTGCAGGTTTTAAAGCAGCCATTATCTATGATAGTGGATATGGAGATATAATTGCAA : TGGCAGGAACCTCTGCTGGTGTGAAGATACTGGCAGTTTTCATTTCAAAAGCTTCTGGAGAAGCACTCACACAGTATGCTGGCTCGGATACGGAAGTATGGTTAATCCCAAGCTTGGAAAACTCAGCTTGGTCAATCATGGCTACATCTTTCATTTCACTACTTTCTATGTCTGCTGTACTTGCAATGTGTTTCTTTGTTCGCCGACATCATATACGAAGAGAACGGCCACGAGCTTCTCGTGTTCGCGAATTTCATGGGATTAGTAGCCGTTTGGTTAAAGCTATGCCAAGTTTGATATTTACGTCAGTTGTGGAGGATAATTCTACATCAGTGACATGTGCTATATGCCTTGAAGATTATACTGCTGGAGATAAGCTTAGAATTCTTCCATGCCGGCACA : AATTTCACACTATGTGTGTTGATGCTTGGCTGACATCATGGAGAACCTTTTGCCCTGTCTGCAAACGGGATGCAAGAACTAGCACTGGTGATCCACCAGCATCAGAATCTACACCATTGCTTTCTTCCAGTCTGCGATCTGTATCTTCAGTGTCATCTCTGAGGTCATCATTAGCATCATCAGAAGTGATACATATAGGCACAGGAGCATCTCGATCACCTTCAGTTTCTCGTCCTCAATCTATCTCTAGCTCTCGTAACCAGCATTCACTTTGGTCTTACCAGTCACCACATCTTGCTATAAGCCGGAGTTCACTGGACCTTCAAAATGCATCTTCTCAAAGATCTCGTGCAGCTTACTTAATTTCATCCAACTCATTGGGTTATCCTTGTTTATCACCTCTTAATTCAAGATATGGGTCTGCATACATTCCTAGTCCTAGCAATCCCTCGTCGAGCTATATGGGATCAACAAGTCGGCAGCCTAACCCACTGCATCACAGTGAATCAATTACAAGCTTTTCACCATTTGCTTCAGCTAACTCTCTTCCTGGATGTGAGTCGTGATTTAATTGATCATGGCAAACATTAATCAAATTGTTGAAGTCCCTTGCAGGGAACTCAGGTTGGGTTATTCTGACCTCAAATTCACGTGAAGACAATAGAGCTGATTCGTGTTGGTTGCTTTGACATCTGGACGGAGGAATACAACAGCTAGCTTCATTGCTCAACACTTCTGGGATATTGGTTTAGTAGTTGATAGGTTTGATAATTTTGAGTTTTTTACAGAGTGTACATTCTTAAAGATGGGTGTATTACTGTACGCATTGCGCCTTCTTTTGTTTATTGCTTTTTTTTTTCTTCTTACCCTCGATTTCTCTATAATAGTGATGTTTTTAGCCATGTCCACCTGACAGATGGTTGAGGCCTGTAGTTTGCATGTAAATATGAATGCCCTTGAGGTGACTAAATCTAGTCTTTTACTTGTTTTAGTTTTTGAATATCCACTGATTTCCAAATATTGCATATCT</gDNA_template>
            <first_frame> C  *  Y  V  L  C  L  *  R  L  L  E  L  L  V  V  *  F  *  L  E  I  T  G  L  C  L  L  K  I  L  K  L  I  L  :  L  P  H  Q  R  V  Q  E  N  V  G  G  C  I  L  R  S  L  W  M  P  A  Q  P  *  L  T  R  L  N  Q  L  I  T  S  Q  K  N  H  L  F  *  *  S  G  V  D  V  A  L  K  I  K  L  E  K  H  K  L  Q  V  L  K  Q  P  L  S  M  I  V  D  M  E  I  *  L  Q  :  W  Q  E  P  L  L  V  *  R  Y  W  Q  F  S  F  Q  K  L  L  E  K  H  S  H  S  M  L  A  R  I  R  K  Y  G  *  S  Q  A  W  K  T  Q  L  G  Q  S  W  L  H  L  S  F  H  Y  F  L  C  L  L  Y  L  Q  C  V  S  L  F  A  D  I  I  Y  E  E  N  G  H  E  L  L  V  F  A  N  F  M  G  L  V  A  V  W  L  K  L  C  Q  V  *  Y  L  R  Q  L  W  R  I  I  L  H  Q  *  H  V  L  Y  A  L  K  I  I  L  L  E  I  S  L  E  F  F  H  A  G  T  :  N  F  T  L  C  V  L  M  L  G  *  H  H  G  E  P  F  A  L  S  A  N  G  M  Q  E  L  A  L  V  I  H  Q  H  Q  N  L  H  H  C  F  L  P  V  C  D  L  Y  L  Q  C  H  L  *  G  H  H  *  H  H  Q  K  *  Y  I  *  A  Q  E  H  L  D  H  L  Q  F  L  V  L  N  L  S  L  A  L  V  T  S  I  H  F  G  L  T  S  H  H  I  L  L  *  A  G  V  H  W  T  F  K  M  H  L  L  K  D  L  V  Q  L  T  *  F  H  P  T  H  W  V  I  L  V  Y  H  L  L  I  Q  D  M  G  L  H  T  F  L  V  L  A  I  P  R  R  A  I  W  D  Q  Q  V  G  S  L  T  H  C  I  T  V  N  Q  L  Q  A  F  H  H  L  L  Q  L  T  L  F  L  D  V  S  R  D  L  I  D  H  G  K  H  *  S  N  C  *  S  P  L  Q  G  T  Q  V  G  L  F  *  P  Q  I  H  V  K  T  I  E  L  I  R  V  G  C  F  D  I  W  T  E  E  Y  N  S  *  L  H  C  S  T  L  L  G  Y  W  F  S  S  *  *  V  *  *  F  *  V  F  Y  R  V  Y  I  L  K  D  G  C  I  T  V  R  I  A  P  S  F  V  Y  C  F  F  F  S  S  Y  P  R  F  L  Y  N  S  D  V  F  S  H  V  H  L  T  D  G  *  G  L  *  F  A  C  K  Y  E  C  P  *  G  D  *  I  *  S  F  T  C  F  S  F  *  I  S  T  D  F  Q  I  L  H  I  </first_frame>
            <second_frame>  V  D  M  F  C  V  F  D  G  F  S  S  Y  W  *  C  D  F  D  W  K  *  Q  D  F  V  F  *  R  Y  *  S  *  F  C :   S  L  T  K  G  F  R  K  M  W  E  V  V  Y  C  G  A  F  G  C  L  L  N  L  D  *  Q  D  *  T  N  *  *  L  H  K  R  T  I  C  S  D  N  Q  G  W  M  *  L  *  R  *  S  *  K  S  T  S  C  R  F  *  S  S  H  Y  L  *  *  W  I  W  R  Y  N  C  N :   G  R  N  L  C  W  C  E  D  T  G  S  F  H  F  K  S  F  W  R  S  T  H  T  V  C  W  L  G  Y  G  S  M  V  N  P  K  L  G  K  L  S  L  V  N  H  G  Y  I  F  H  F  T  T  F  Y  V  C  C  T  C  N  V  F  L  C  S  P  T  S  Y  T  K  R  T  A  T  S  F  S  C  S  R  I  S  W  D  *  *  P  F  G  *  S  Y  A  K  F  D  I  Y  V  S  C  G  G  *  F  Y  I  S  D  M  C  Y  M  P  *  R  L  Y  C  W  R  *  A  *  N  S  S  M  P  A  Q :   I  S  H  Y  V  C  *  C  L  A  D  I  M  E  N  L  L  P  C  L  Q  T  G  C  K  N  *  H  W  *  S  T  S  I  R  I  Y  T  I  A  F  F  Q  S  A  I  C  I  F  S  V  I  S  E  V  I  I  S  I  I  R  S  D  T  Y  R  H  R  S  I  S  I  T  F  S  F  S  S  S  I  Y  L  *  L  S  *  P  A  F  T  L  V  L  P  V  T  T  S  C  Y  K  P  E  F  T  G  P  S  K  C  I  F  S  K  I  S  C  S  L  L  N  F  I  Q  L  I  G  L  S  L  F  I  T  S  *  F  K  I  W  V  C  I  H  S  *  S  *  Q  S  L  V  E  L  Y  G  I  N  K  S  A  A  *  P  T  A  S  Q  *  I  N  Y  K  L  F  T  I  C  F  S  *  L  S  S  W  M  *  V  V  I  *  L  I  M  A  N  I  N  Q  I  V  E  V  P  C  R  E  L  R  L  G  Y  S  D  L  K  F  T  *  R  Q  *  S  *  F  V  L  V  A  L  T  S  G  R  R  N  T  T  A  S  F  I  A  Q  H  F  W  D  I  G  L  V  V  D  R  F  D  N  F  E  F  F  T  E  C  T  F  L  K  M  G  V  L  L  Y  A  L  R  L  L  L  F  I  A  F  F  F  L  L  T  L  D  F  S  I  I  V  M  F  L  A  M  S  T  *  Q  M  V  E  A  C  S  L  H  V  N  M  N  A  L  E  V  T  K  S  S  L  L  L  V  L  V  F  E  Y  P  L  I  S  K  Y  C  I  S </second_frame>
            <third_frame>   L  I  C  F  V  S  L  T  A  S  R  A  T  G  S  V  I  L  I  G  N  N  R  T  L  S  F  E  D  I  E  A  N  F   : A  P  S  P  K  G  S  G  K  C  G  R  L  Y  I  A  E  P  L  D  A  C  S  T  L  T  N  K  I  E  P  T  N  N  F  T  K  E  P  F  V  L  I  I  R  G  G  C  S  F  E  D  K  V  R  K  A  Q  A  A  G  F  K  A  A  I  I  Y  D  S  G  Y  G  D  I  I  A   : M  A  G  T  S  A  G  V  K  I  L  A  V  F  I  S  K  A  S  G  E  A  L  T  Q  Y  A  G  S  D  T  E  V  W  L  I  P  S  L  E  N  S  A  W  S  I  M  A  T  S  F  I  S  L  L  S  M  S  A  V  L  A  M  C  F  F  V  R  R  H  H  I  R  R  E  R  P  R  A  S  R  V  R  E  F  H  G  I  S  S  R  L  V  K  A  M  P  S  L  I  F  T  S  V  V  E  D  N  S  T  S  V  T  C  A  I  C  L  E  D  Y  T  A  G  D  K  L  R  I  L  P  C  R  H   : K  F  H  T  M  C  V  D  A  W  L  T  S  W  R  T  F  C  P  V  C  K  R  D  A  R  T  S  T  G  D  P  P  A  S  E  S  T  P  L  L  S  S  S  L  R  S  V  S  S  V  S  S  L  R  S  S  L  A  S  S  E  V  I  H  I  G  T  G  A  S  R  S  P  S  V  S  R  P  Q  S  I  S  S  S  R  N  Q  H  S  L  W  S  Y  Q  S  P  H  L  A  I  S  R  S  S  L  D  L  Q  N  A  S  S  Q  R  S  R  A  A  Y  L  I  S  S  N  S  L  G  Y  P  C  L  S  P  L  N  S  R  Y  G  S  A  Y  I  P  S  P  S  N  P  S  S  S  Y  M  G  S  T  S  R  Q  P  N  P  L  H  H  S  E  S  I  T  S  F  S  P  F  A  S  A  N  S  L  P  G  C  E  S  *  F  N  *  S  W  Q  T  L  I  K  L  L  K  S  L  A  G  N  S  G  W  V  I  L  T  S  N  S  R  E  D  N  R  A  D  S  C  W  L  L  *  H  L  D  G  G  I  Q  Q  L  A  S  L  L  N  T  S  G  I  L  V  *  *  L  I  G  L  I  I  L  S  F  L  Q  S  V  H  S  *  R  W  V  Y  Y  C  T  H  C  A  F  F  C  L  L  L  F  F  F  F  L  P  S  I  S  L  *  *  *  C  F  *  P  C  P  P  D  R  W  L  R  P  V  V  C  M  *  I  *  M  P  L  R  *  L  N  L  V  F  Y  L  F  *  F  L  N  I  H  *  F  P  N  I  A  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0132E21.2" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9273" stop="9375"/>
                    <exon start="9912" stop="10142"/>
                    <exon start="11758" stop="12159"/>
                    <exon start="13229" stop="13794"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1299</number_coding_nucleotides>
                  <number_encoded_amino_acids>433</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LICFVSLTASRATGSVILIGNNRTLSFEDIEANFAPSPKGSGKCGRLYIAEPLDACSTLTNKIEPTNNFTKEPFVLIIRGGCSFEDKVRKAQAAGFKAAIIYDSGYGDIIAMAGTSAGVKILAVFISKASGEALTQYAGSDTEVWLIPSLENSAWSIMATSFISLLSMSAVLAMCFFVRRHHIRRERPRASRVREFHGISSRLVKAMPSLIFTSVVEDNSTSVTCAICLEDYTAGDKLRILPCRHKFHTMCVDAWLTSWRTFCPVCKRDARTSTGDPPASESTPLLSSSLRSVSSVSSLRSSLASSEVIHIGTGASRSPSVSRPQSISSSRNQHSLWSYQSPHLAISRSSLDLQNASSQRSRAAYLISSNSLGYPCLSPLNSRYGSAYIPSPSNPSSSYMGSTSRQPNPLHHSESITSFSPFASANSLPGCES*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0132E21.2" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13899" stop="14141"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>240</number_coding_nucleotides>
                  <number_encoded_amino_acids>80</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FVLVALTSGRRNTTASFIAQHFWDIGLVVDRFDNFEFFTECTFLKMGVLLYALRLLLFIAFFFLLTLDFSIIVMFLAMST*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="10114" e_stop="10142"/>
            <exon e_start="11758" e_stop="12159"/>
            <exon e_start="13844" e_stop="14186"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.865" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.980" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="10114" e_stop="10142" e_length="29"/>
          </exon>
          <intron i_serial="1" don_prob="0.865" acc_prob="0.000">
            <gDNA_intron_boundary i_start="10143" i_stop="11757" i_length="1615"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="11758" e_stop="12159" e_length="402"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.980">
            <gDNA_intron_boundary i_start="12160" i_stop="13843" i_length="1684"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="13844" e_stop="14186" e_length="343"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10114" stop="10142"/>
              <exon start="11758" stop="12159"/>
              <exon start="13844" stop="13925"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688975" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10114" stop="10142"/>
              <exon start="11758" stop="12159"/>
              <exon start="13844" stop="13925"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551488" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10115" stop="10142"/>
              <exon start="11758" stop="12159"/>
              <exon start="13844" stop="14167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263235" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10115" stop="10142"/>
              <exon start="11758" stop="12159"/>
              <exon start="13844" stop="13899"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254864" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10117" stop="10142"/>
              <exon start="11758" stop="12159"/>
              <exon start="13844" stop="14186"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261793" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11858" stop="12098"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233613" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGATAGTGGATATGGAGATATAATTGCAA : TGGCAGGAACCTCTGCTGGTGTGAAGATACTGGCAGTTTTCATTTCAAAAGCTTCTGGAGAAGCACTCACACAGTATGCTGGCTCGGATACGGAAGTATGGTTAATCCCAAGCTTGGAAAACTCAGCTTGGTCAATCATGGCTACATCTTTCATTTCACTACTTTCTATGTCTGCTGTACTTGCAATGTGTTTCTTTGTTCGCCGACATCATATACGAAGAGAACGGCCACGAGCTTCTCGTGTTCGCGAATTTCATGGGATTAGTAGCCGTTTGGTTAAAGCTATGCCAAGTTTGATATTTACGTCAGTTGTGGAGGATAATTCTACATCAGTGACATGTGCTATATGCCTTGAAGATTATACTGCTGGAGATAAGCTTAGAATTCTTCCATGCCGGCACA : GGAACTCAGGTTGGGTTATTCTGACCTCAAATTCACGTGAAGACAATAGAGCTGATTCGTGTTGGTTGCTTTGACATCTGGACGGAGGAATACAACAGCTAGCTTCATTGCTCAACACTTCTGGGATATTGGTTTAGTAGTTGATAGGTTTGATAATTTTGAGTTTTTTACAGAGTGTACATTCTTAAAGATGGGTGTATTACTGTACGCATTGCGCCTTCTTTTGTTTATTGCTTTTTTTTTTCTTCTTACCCTCGATTTCTCTATAATAGTGATGTTTTTAGCCATGTCCACCTGACAGATGGTTGAGGCCTGTAGTTTGCATGTAAATATGAATGCCCTT</gDNA_template>
            <first_frame> *  *  W  I  W  R  Y  N  C  N :   G  R  N  L  C  W  C  E  D  T  G  S  F  H  F  K  S  F  W  R  S  T  H  T  V  C  W  L  G  Y  G  S  M  V  N  P  K  L  G  K  L  S  L  V  N  H  G  Y  I  F  H  F  T  T  F  Y  V  C  C  T  C  N  V  F  L  C  S  P  T  S  Y  T  K  R  T  A  T  S  F  S  C  S  R  I  S  W  D  *  *  P  F  G  *  S  Y  A  K  F  D  I  Y  V  S  C  G  G  *  F  Y  I  S  D  M  C  Y  M  P  *  R  L  Y  C  W  R  *  A  *  N  S  S  M  P  A  Q :   E  L  R  L  G  Y  S  D  L  K  F  T  *  R  Q  *  S  *  F  V  L  V  A  L  T  S  G  R  R  N  T  T  A  S  F  I  A  Q  H  F  W  D  I  G  L  V  V  D  R  F  D  N  F  E  F  F  T  E  C  T  F  L  K  M  G  V  L  L  Y  A  L  R  L  L  L  F  I  A  F  F  F  L  L  T  L  D  F  S  I  I  V  M  F  L  A  M  S  T  *  Q  M  V  E  A  C  S  L  H  V  N  M  N  A  L </first_frame>
            <second_frame>  D  S  G  Y  G  D  I  I  A   : M  A  G  T  S  A  G  V  K  I  L  A  V  F  I  S  K  A  S  G  E  A  L  T  Q  Y  A  G  S  D  T  E  V  W  L  I  P  S  L  E  N  S  A  W  S  I  M  A  T  S  F  I  S  L  L  S  M  S  A  V  L  A  M  C  F  F  V  R  R  H  H  I  R  R  E  R  P  R  A  S  R  V  R  E  F  H  G  I  S  S  R  L  V  K  A  M  P  S  L  I  F  T  S  V  V  E  D  N  S  T  S  V  T  C  A  I  C  L  E  D  Y  T  A  G  D  K  L  R  I  L  P  C  R  H   : R  N  S  G  W  V  I  L  T  S  N  S  R  E  D  N  R  A  D  S  C  W  L  L  *  H  L  D  G  G  I  Q  Q  L  A  S  L  L  N  T  S  G  I  L  V  *  *  L  I  G  L  I  I  L  S  F  L  Q  S  V  H  S  *  R  W  V  Y  Y  C  T  H  C  A  F  F  C  L  L  L  F  F  F  F  L  P  S  I  S  L  *  *  *  C  F  *  P  C  P  P  D  R  W  L  R  P  V  V  C  M  *  I  *  M  P   </second_frame>
            <third_frame>   I  V  D  M  E  I  *  L  Q  :  W  Q  E  P  L  L  V  *  R  Y  W  Q  F  S  F  Q  K  L  L  E  K  H  S  H  S  M  L  A  R  I  R  K  Y  G  *  S  Q  A  W  K  T  Q  L  G  Q  S  W  L  H  L  S  F  H  Y  F  L  C  L  L  Y  L  Q  C  V  S  L  F  A  D  I  I  Y  E  E  N  G  H  E  L  L  V  F  A  N  F  M  G  L  V  A  V  W  L  K  L  C  Q  V  *  Y  L  R  Q  L  W  R  I  I  L  H  Q  *  H  V  L  Y  A  L  K  I  I  L  L  E  I  S  L  E  F  F  H  A  G  T  :  G  T  Q  V  G  L  F  *  P  Q  I  H  V  K  T  I  E  L  I  R  V  G  C  F  D  I  W  T  E  E  Y  N  S  *  L  H  C  S  T  L  L  G  Y  W  F  S  S  *  *  V  *  *  F  *  V  F  Y  R  V  Y  I  L  K  D  G  C  I  T  V  R  I  A  P  S  F  V  Y  C  F  F  F  S  S  Y  P  R  F  L  Y  N  S  D  V  F  S  H  V  H  L  T  D  G  *  G  L  *  F  A  C  K  Y  E  C  P  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0132E21.2" strand="+"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="10115" stop="10142"/>
                    <exon start="11758" stop="12159"/>
                    <exon start="13844" stop="13917"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>501</number_coding_nucleotides>
                  <number_encoded_amino_acids>167</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DSGYGDIIAMAGTSAGVKILAVFISKASGEALTQYAGSDTEVWLIPSLENSAWSIMATSFISLLSMSAVLAMCFFVRRHHIRRERPRASRVREFHGISSRLVKAMPSLIFTSVVEDNSTSVTCAICLEDYTAGDKLRILPCRHRNSGWVILTSNSREDNRADSCWLL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0132E21.2" strand="+"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13899" stop="14141"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>240</number_coding_nucleotides>
                  <number_encoded_amino_acids>80</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FVLVALTSGRRNTTASFIAQHFWDIGLVVDRFDNFEFFTECTFLKMGVLLYALRLLLFIAFFFLLTLDFSIIVMFLAMST*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="19351" PGL_stop="14415"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="19351" e_stop="19164"/>
            <exon e_start="17910" e_stop="17807"/>
            <exon e_start="16808" e_stop="16438"/>
            <exon e_start="15807" e_stop="15500"/>
            <exon e_start="15042" e_stop="14415"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.859" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.976" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.490" e_score="1.000"/>
          <exon-intron don_prob="0.974" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="19351" e_stop="19164" e_length="188"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.859">
            <gDNA_intron_boundary i_start="19163" i_stop="17911" i_length="1253"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="17910" e_stop="17807" e_length="104"/>
          </exon>
          <intron i_serial="2" don_prob="0.990" acc_prob="0.976">
            <gDNA_intron_boundary i_start="17806" i_stop="16809" i_length="998"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="16808" e_stop="16438" e_length="371"/>
          </exon>
          <intron i_serial="3" don_prob="0.992" acc_prob="0.490">
            <gDNA_intron_boundary i_start="16437" i_stop="15808" i_length="630"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="15807" e_stop="15500" e_length="308"/>
          </exon>
          <intron i_serial="4" don_prob="0.974" acc_prob="1.000">
            <gDNA_intron_boundary i_start="15499" i_stop="15043" i_length="457"/>
          </intron>
          <exon e_serial="5" e_score="0.994">
            <gDNA_exon_boundary e_start="15042" e_stop="14415" e_length="628"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19351" stop="19164"/>
              <exon start="17910" stop="17888"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328281" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19345" stop="19164"/>
              <exon start="17910" stop="17807"/>
              <exon start="16808" stop="16438"/>
              <exon start="15807" stop="15520"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727412" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19345" stop="19164"/>
              <exon start="17910" stop="17807"/>
              <exon start="16808" stop="16567"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338694" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19345" stop="19164"/>
              <exon start="17910" stop="17807"/>
              <exon start="16808" stop="16606"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306048" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19335" stop="19164"/>
              <exon start="17910" stop="17807"/>
              <exon start="16808" stop="16438"/>
              <exon start="15807" stop="15786"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390682" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19334" stop="19164"/>
              <exon start="17910" stop="17807"/>
              <exon start="16808" stop="16448"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373998" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19334" stop="19164"/>
              <exon start="17910" stop="17807"/>
              <exon start="16808" stop="16590"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298703" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17857" stop="17807"/>
              <exon start="16808" stop="16438"/>
              <exon start="15807" stop="15500"/>
              <exon start="15042" stop="14906"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705532" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16800" stop="16438"/>
              <exon start="15807" stop="15500"/>
              <exon start="15042" stop="14854"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708299" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15744" stop="15500"/>
              <exon start="15042" stop="14566"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377791" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15744" stop="15500"/>
              <exon start="15042" stop="14613"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235575" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15574" stop="15500"/>
              <exon start="15042" stop="14415"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390934" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15042" stop="14415"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373997" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15009" stop="14453"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263743" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15003" stop="14497"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226125" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14880" stop="14497"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226029" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14807" stop="14453"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262080" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTTGGTTTCACGGCCGTTCATCACGGCGGCGGAGTCGGAACAGCAGAAGCAACAGTTGGGCATAGACAGCGGTAAAGTATTGGAACTTGATGAATCTAACTTTGATGCTGCAATTTCCAGTTTTGATTATATTTTGGTCGATTTCTACGCTCCTTGGTGTGGTCACTGCAAACGACTTGCACCTCAG : TTGGACAAAGCTGCTAGCATACTTGCTGATTTGAAGAAGCCCATAAGTATTGCAAAAATAGATGCTGACAAGTACAAACGTGTTGGTTCAAAATATGGCATTGA : TGGATATCCAACTTTAAAGATATTTATGCATGGTGTTCCAACAGAATATTATGGACCAAGAAAAGCAGATTTACTTGTACGATTCTTGAAGAAGTTTGTTGCTGCTGATGTGGCCATACTCAATTCTGATTCAGCCATTAGTGAATTTGTTGAAGCAGCCGGCACTAGTTTCCCTATATTTATAGGCTTTGGTTTGAATGAATCTGCCATATCACATTTTGCAGTAAAATACAAGAAGAGAGCATGGTTTTCTGTGGCAAAAGATTTCTCGGATAAGACCATGGAATTCTATGATTTTGACAAGGTACCTGCTTTGGTAGCTCGTCATCCAAACTATGATGAACAAAGCATCTTCTATGGCCCCTTTGAAG : AAAATTTTGTTGAGGATTATATCAAGCAGAGTTTGCTCCCACTGACTTTGCCCATTACTGAAGAAACTCTGAGATTGCTGAAAGATGATGAGAGAAAAGTTATTCTAACAATTTTGGAAGATGAAACTGATGATAGGTCTAAGAAATTATTGAAGCTCCTGAAAGCTGCTGCATCTGCAAACCGCGACTTCGTGTTTGTTTTTGTTGGGTTCAAGCAATGGCAAGGGTTTGCTGAATCATTTGACGTTTCTAAGAAAACTAAGCTGCCAAAAATGGTTGTTTGGGATGGCGATGAGGAGTACTTTTCA : GTTGTTGGCTCTGAGAGCGTTGAAGATGAAGATCAGGGGTCCCAAATTACACATTTTATTCAAGGATACAAAGACGGAAATATCATACAGAAACGTATTAGCTCTGGTTCTTTCATGGGTTTCATAAACTCAATGATAGGTTTGGGAACAGTGACCATCATAGTGTTTGTGGTTGCGGTGGTGATGATTATCCAGTCTTTGAAAGAGGAACCCTTAACTGTTGGTACAAGGGACGAGGGAGATCATCCAAGCAGCTCCACCTCTCAGACAGAAGCCAGACAACCACTTCGTTCTGGAGAGAAACAAGACAAGGAAGATTAAGTTTTACACCAGTCAGACCTCAGATAGTTAGCTTGAGAAATCCTCGACAGGAAAACCAAACTACACGTAGGTCTAAGAGTGCTGTTAAGTTTCATCCTCACAACGATCACAGCCCTTGTTTTCTTATTAAAGTTATTTGAACAACATACTGTAGGATTACTGTAACCAGAAGTGTGGAGGGAAGAGTTTGTGCTTCTATCTGTGTTATTGAATTTAACAAATGTGGAGGCAAATTTAATTTTAGCACTGTATAAAATGTGTTTGAAACAATCTTTTTTAGCTAATATCACTGCTTGTTTGATGATTA</gDNA_template>
            <first_frame> F  W  F  H  G  R  S  S  R  R  R  S  R  N  S  R  S  N  S  W  A  *  T  A  V  K  Y  W  N  L  M  N  L  T  L  M  L  Q  F  P  V  L  I  I  F  W  S  I  S  T  L  L  G  V  V  T  A  N  D  L  H  L  S :   W  T  K  L  L  A  Y  L  L  I  *  R  S  P  *  V  L  Q  K  *  M  L  T  S  T  N  V  L  V  Q  N  M  A  L   : M  D  I  Q  L  *  R  Y  L  C  M  V  F  Q  Q  N  I  M  D  Q  E  K  Q  I  Y  L  Y  D  S  *  R  S  L  L  L  L  M  W  P  Y  S  I  L  I  Q  P  L  V  N  L  L  K  Q  P  A  L  V  S  L  Y  L  *  A  L  V  *  M  N  L  P  Y  H  I  L  Q  *  N  T  R  R  E  H  G  F  L  W  Q  K  I  S  R  I  R  P  W  N  S  M  I  L  T  R  Y  L  L  W  *  L  V  I  Q  T  M  M  N  K  A  S  S  M  A  P  L  K  :  K  I  L  L  R  I  I  S  S  R  V  C  S  H  *  L  C  P  L  L  K  K  L  *  D  C  *  K  M  M  R  E  K  L  F  *  Q  F  W  K  M  K  L  M  I  G  L  R  N  Y  *  S  S  *  K  L  L  H  L  Q  T  A  T  S  C  L  F  L  L  G  S  S  N  G  K  G  L  L  N  H  L  T  F  L  R  K  L  S  C  Q  K  W  L  F  G  M  A  M  R  S  T  F  Q :   L  L  A  L  R  A  L  K  M  K  I  R  G  P  K  L  H  I  L  F  K  D  T  K  T  E  I  S  Y  R  N  V  L  A  L  V  L  S  W  V  S  *  T  Q  *  *  V  W  E  Q  *  P  S  *  C  L  W  L  R  W  *  *  L  S  S  L  *  K  R  N  P  *  L  L  V  Q  G  T  R  E  I  I  Q  A  A  P  P  L  R  Q  K  P  D  N  H  F  V  L  E  R  N  K  T  R  K  I  K  F  Y  T  S  Q  T  S  D  S  *  L  E  K  S  S  T  G  K  P  N  Y  T  *  V  *  E  C  C  *  V  S  S  S  Q  R  S  Q  P  L  F  S  Y  *  S  Y  L  N  N  I  L  *  D  Y  C  N  Q  K  C  G  G  K  S  L  C  F  Y  L  C  Y  *  I  *  Q  M  W  R  Q  I  *  F  *  H  C  I  K  C  V  *  N  N  L  F  *  L  I  S  L  L  V  *  *  L </first_frame>
            <second_frame>  F  G  F  T  A  V  H  H  G  G  G  V  G  T  A  E  A  T  V  G  H  R  Q  R  *  S  I  G  T  *  *  I  *  L  *  C  C  N  F  Q  F  *  L  Y  F  G  R  F  L  R  S  L  V  W  S  L  Q  T  T  C  T  S   : V  G  Q  S  C  *  H  T  C  *  F  E  E  A  H  K  Y  C  K  N  R  C  *  Q  V  Q  T  C  W  F  K  I  W  H  *  :  W  I  S  N  F  K  D  I  Y  A  W  C  S  N  R  I  L  W  T  K  K  S  R  F  T  C  T  I  L  E  E  V  C  C  C  *  C  G  H  T  Q  F  *  F  S  H  *  *  I  C  *  S  S  R  H  *  F  P  Y  I  Y  R  L  W  F  E  *  I  C  H  I  T  F  C  S  K  I  Q  E  E  S  M  V  F  C  G  K  R  F  L  G  *  D  H  G  I  L  *  F  *  Q  G  T  C  F  G  S  S  S  S  K  L  *  *  T  K  H  L  L  W  P  L  *  R :   K  F  C  *  G  L  Y  Q  A  E  F  A  P  T  D  F  A  H  Y  *  R  N  S  E  I  A  E  R  *  *  E  K  S  Y  S  N  N  F  G  R  *  N  *  *  *  V  *  E  I  I  E  A  P  E  S  C  C  I  C  K  P  R  L  R  V  C  F  C  W  V  Q  A  M  A  R  V  C  *  I  I  *  R  F  *  E  N  *  A  A  K  N  G  C  L  G  W  R  *  G  V  L  F   : S  C  W  L  *  E  R  *  R  *  R  S  G  V  P  N  Y  T  F  Y  S  R  I  Q  R  R  K  Y  H  T  E  T  Y  *  L  W  F  F  H  G  F  H  K  L  N  D  R  F  G  N  S  D  H  H  S  V  C  G  C  G  G  D  D  Y  P  V  F  E  R  G  T  L  N  C  W  Y  K  G  R  G  R  S  S  K  Q  L  H  L  S  D  R  S  Q  T  T  T  S  F  W  R  E  T  R  Q  G  R  L  S  F  T  P  V  R  P  Q  I  V  S  L  R  N  P  R  Q  E  N  Q  T  T  R  R  S  K  S  A  V  K  F  H  P  H  N  D  H  S  P  C  F  L  I  K  V  I  *  T  T  Y  C  R  I  T  V  T  R  S  V  E  G  R  V  C  A  S  I  C  V  I  E  F  N  K  C  G  G  K  F  N  F  S  T  V  *  N  V  F  E  T  I  F  F  S  *  Y  H  C  L  F  D  D   </second_frame>
            <third_frame>   L  V  S  R  P  F  I  T  A  A  E  S  E  Q  Q  K  Q  Q  L  G  I  D  S  G  K  V  L  E  L  D  E  S  N  F  D  A  A  I  S  S  F  D  Y  I  L  V  D  F  Y  A  P  W  C  G  H  C  K  R  L  A  P  Q  :  L  D  K  A  A  S  I  L  A  D  L  K  K  P  I  S  I  A  K  I  D  A  D  K  Y  K  R  V  G  S  K  Y  G  I  D :   G  Y  P  T  L  K  I  F  M  H  G  V  P  T  E  Y  Y  G  P  R  K  A  D  L  L  V  R  F  L  K  K  F  V  A  A  D  V  A  I  L  N  S  D  S  A  I  S  E  F  V  E  A  A  G  T  S  F  P  I  F  I  G  F  G  L  N  E  S  A  I  S  H  F  A  V  K  Y  K  K  R  A  W  F  S  V  A  K  D  F  S  D  K  T  M  E  F  Y  D  F  D  K  V  P  A  L  V  A  R  H  P  N  Y  D  E  Q  S  I  F  Y  G  P  F  E   : E  N  F  V  E  D  Y  I  K  Q  S  L  L  P  L  T  L  P  I  T  E  E  T  L  R  L  L  K  D  D  E  R  K  V  I  L  T  I  L  E  D  E  T  D  D  R  S  K  K  L  L  K  L  L  K  A  A  A  S  A  N  R  D  F  V  F  V  F  V  G  F  K  Q  W  Q  G  F  A  E  S  F  D  V  S  K  K  T  K  L  P  K  M  V  V  W  D  G  D  E  E  Y  F  S  :  V  V  G  S  E  S  V  E  D  E  D  Q  G  S  Q  I  T  H  F  I  Q  G  Y  K  D  G  N  I  I  Q  K  R  I  S  S  G  S  F  M  G  F  I  N  S  M  I  G  L  G  T  V  T  I  I  V  F  V  V  A  V  V  M  I  I  Q  S  L  K  E  E  P  L  T  V  G  T  R  D  E  G  D  H  P  S  S  S  T  S  Q  T  E  A  R  Q  P  L  R  S  G  E  K  Q  D  K  E  D  *  V  L  H  Q  S  D  L  R  *  L  A  *  E  I  L  D  R  K  T  K  L  H  V  G  L  R  V  L  L  S  F  I  L  T  T  I  T  A  L  V  F  L  L  K  L  F  E  Q  H  T  V  G  L  L  *  P  E  V  W  R  E  E  F  V  L  L  S  V  L  L  N  L  T  N  V  E  A  N  L  I  L  A  L  Y  K  M  C  L  K  Q  S  F  L  A  N  I  T  A  C  L  M  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0132E21.2" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="19349" stop="19164"/>
                    <exon start="17910" stop="17807"/>
                    <exon start="16808" stop="16438"/>
                    <exon start="15807" stop="15500"/>
                    <exon start="15042" stop="14722"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1287</number_coding_nucleotides>
                  <number_encoded_amino_acids>429</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LVSRPFITAAESEQQKQQLGIDSGKVLELDESNFDAAISSFDYILVDFYAPWCGHCKRLAPQLDKAASILADLKKPISIAKIDADKYKRVGSKYGIDGYPTLKIFMHGVPTEYYGPRKADLLVRFLKKFVAADVAILNSDSAISEFVEAAGTSFPIFIGFGLNESAISHFAVKYKKRAWFSVAKDFSDKTMEFYDFDKVPALVARHPNYDEQSIFYGPFEENFVEDYIKQSLLPLTLPITEETLRLLKDDERKVILTILEDETDDRSKKLLKLLKAAASANRDFVFVFVGFKQWQGFAESFDVSKKTKLPKMVVWDGDEEYFSVVGSESVEDEDQGSQITHFIQGYKDGNIIQKRISSGSFMGFINSMIGLGTVTIIVFVVAVVMIIQSLKEEPLTVGTRDEGDHPSSSTSQTEARQPLRSGEKQDKED*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="29390" PGL_stop="29980"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="29390" e_stop="29980"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.988">
            <gDNA_exon_boundary e_start="29390" e_stop="29980" e_length="591"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29390" stop="29980"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542673" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29390" stop="29885"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301564" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CGCAAACCTCTAGAACAATATCTGCCCCTTTCCGGACACAAAATTAGGCGGAAATTGTGGCGGGACGTCGCACTAGTCTGTTTTCAAAACTCGTTTTGGTGGAAGAAAACCCCTTAGTTAGTCCAAAGGTTCTATCCTAAAAGTTTTGATGATAACAAACTTATAGCGTTCAAATCTTGTGATTGTAGTGATAACCAGAAACTCACAAGTAAGTCCACATTCAAAGCCAAGATTGGATCAAAAGTATATAATCAATTTTTTGCTGAATTATAGTCAACCACAGGTGGTATGTTACAGTCATGGTTGCTATCCATCCGGACTTATATTAATCATTACATGAAAACCAACTGATGGACAGACAGAAAGTTGTTTGGAAGGTTATCTGCAATATTTGACAATCATCAGTAAGTCAAAGGAATTGGTTACATAAGGCTGAGTGTTTCCATTGGCAAATGCTTAAACCCCGGTGCAGTCAGAACAAGCCAGGATGAAGTGGTATGGTGACCTTAGGGGGACTGAGAGACATGGAAACTAGGTTTACCCACAGGCAGACTTGTATGGCCTTGAGGAGAAGTCTTAAAGATTTGTTTG</gDNA_template>
            <first_frame> R  K  P  L  E  Q  Y  L  P  L  S  G  H  K  I  R  R  K  L  W  R  D  V  A  L  V  C  F  Q  N  S  F  W  W  K  K  T  P  *  L  V  Q  R  F  Y  P  K  S  F  D  D  N  K  L  I  A  F  K  S  C  D  C  S  D  N  Q  K  L  T  S  K  S  T  F  K  A  K  I  G  S  K  V  Y  N  Q  F  F  A  E  L  *  S  T  T  G  G  M  L  Q  S  W  L  L  S  I  R  T  Y  I  N  H  Y  M  K  T  N  *  W  T  D  R  K  L  F  G  R  L  S  A  I  F  D  N  H  Q  *  V  K  G  I  G  Y  I  R  L  S  V  S  I  G  K  C  L  N  P  G  A  V  R  T  S  Q  D  E  V  V  W  *  P  *  G  D  *  E  T  W  K  L  G  L  P  T  G  R  L  V  W  P  *  G  E  V  L  K  I  C  L </first_frame>
            <second_frame>  A  N  L  *  N  N  I  C  P  F  P  D  T  K  L  G  G  N  C  G  G  T  S  H  *  S  V  F  K  T  R  F  G  G  R  K  P  L  S  *  S  K  G  S  I  L  K  V  L  M  I  T  N  L  *  R  S  N  L  V  I  V  V  I  T  R  N  S  Q  V  S  P  H  S  K  P  R  L  D  Q  K  Y  I  I  N  F  L  L  N  Y  S  Q  P  Q  V  V  C  Y  S  H  G  C  Y  P  S  G  L  I  L  I  I  T  *  K  P  T  D  G  Q  T  E  S  C  L  E  G  Y  L  Q  Y  L  T  I  I  S  K  S  K  E  L  V  T  *  G  *  V  F  P  L  A  N  A  *  T  P  V  Q  S  E  Q  A  R  M  K  W  Y  G  D  L  R  G  T  E  R  H  G  N  *  V  Y  P  Q  A  D  L  Y  G  L  E  E  K  S  *  R  F  V   </second_frame>
            <third_frame>   Q  T  S  R  T  I  S  A  P  F  R  T  Q  N  *  A  E  I  V  A  G  R  R  T  S  L  F  S  K  L  V  L  V  E  E  N  P  L  V  S  P  K  V  L  S  *  K  F  *  *  *  Q  T  Y  S  V  Q  I  L  *  L  *  *  *  P  E  T  H  K  *  V  H  I  Q  S  Q  D  W  I  K  S  I  *  S  I  F  C  *  I  I  V  N  H  R  W  Y  V  T  V  M  V  A  I  H  P  D  L  Y  *  S  L  H  E  N  Q  L  M  D  R  Q  K  V  V  W  K  V  I  C  N  I  *  Q  S  S  V  S  Q  R  N  W  L  H  K  A  E  C  F  H  W  Q  M  L  K  P  R  C  S  Q  N  K  P  G  *  S  G  M  V  T  L  G  G  L  R  D  M  E  T  R  F  T  H  R  Q  T  C  M  A  L  R  R  S  L  K  D  L  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06SLm0132E21.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="30436" PGL_stop="31040"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="30436" e_stop="31040"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="30436" e_stop="31040" e_length="605"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30436" stop="31040"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542672" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATAATGAGTTTTAGTTCATTATAATGTCTTGCACGAAAGGACTCTTGGAGTTCTAAATTTGCATTGAGGCAGATGCAGGGAACAATCCAGGTTACTTCTCATGTTTTTTGGTGGAAGGAAATATCACCTGCATGATTTTTGAGGGTAGAACTAAAATTTGAAGGTGAAAAAAAAAACAGAATTATCCTAAAATCTTTAGAAGAACACAAATTTGAATTTTCTGTTACAATTTCTGAGAGGAAAAAAAAACATGGTTGTACATGTTGAATTCATCTTTCTCATTATGTCATCCTTTTCAAGGCAAAATCTTTGAAGTCGAGATCATTTAATCCTGTGTGAATTTACGAGTTGTCTCCAAGTGATAAACATTGTTAGCTTTTAGTTTCTGTTAGGTGATAGAATAGTGTATTGAAGTATGATAACACAACAACTGTTGTTGAACTCAATACCATCTAAGTTTTCTTATTGTCTTTGTCCACTCTATTTTATTTCGTAGGACTGGGCAGGTATAGGTGCAGATGGAGGAGGAGCTAGACTTTAATCTATCCCAAAACACTTTCTTCGTGTGTTTCAAAAGGTTATAAAACAAAATATGATACCATTGA</gDNA_template>
            <first_frame> I  M  S  F  S  S  L  *  C  L  A  R  K  D  S  W  S  S  K  F  A  L  R  Q  M  Q  G  T  I  Q  V  T  S  H  V  F  W  W  K  E  I  S  P  A  *  F  L  R  V  E  L  K  F  E  G  E  K  K  N  R  I  I  L  K  S  L  E  E  H  K  F  E  F  S  V  T  I  S  E  R  K  K  K  H  G  C  T  C  *  I  H  L  S  H  Y  V  I  L  F  K  A  K  S  L  K  S  R  S  F  N  P  V  *  I  Y  E  L  S  P  S  D  K  H  C  *  L  L  V  S  V  R  *  *  N  S  V  L  K  Y  D  N  T  T  T  V  V  E  L  N  T  I  *  V  F  L  L  S  L  S  T  L  F  Y  F  V  G  L  G  R  Y  R  C  R  W  R  R  S  *  T  L  I  Y  P  K  T  L  S  S  C  V  S  K  G  Y  K  T  K  Y  D  T  I   </first_frame>
            <second_frame>  *  *  V  L  V  H  Y  N  V  L  H  E  R  T  L  G  V  L  N  L  H  *  G  R  C  R  E  Q  S  R  L  L  L  M  F  F  G  G  R  K  Y  H  L  H  D  F  *  G  *  N  *  N  L  K  V  K  K  K  T  E  L  S  *  N  L  *  K  N  T  N  L  N  F  L  L  Q  F  L  R  G  K  K  N  M  V  V  H  V  E  F  I  F  L  I  M  S  S  F  S  R  Q  N  L  *  S  R  D  H  L  I  L  C  E  F  T  S  C  L  Q  V  I  N  I  V  S  F  *  F  L  L  G  D  R  I  V  Y  *  S  M  I  T  Q  Q  L  L  L  N  S  I  P  S  K  F  S  Y  C  L  C  P  L  Y  F  I  S  *  D  W  A  G  I  G  A  D  G  G  G  A  R  L  *  S  I  P  K  H  F  L  R  V  F  Q  K  V  I  K  Q  N  M  I  P  L  </second_frame>
            <third_frame>   N  E  F  *  F  I  I  M  S  C  T  K  G  L  L  E  F  *  I  C  I  E  A  D  A  G  N  N  P  G  Y  F  S  C  F  L  V  E  G  N  I  T  C  M  I  F  E  G  R  T  K  I  *  R  *  K  K  K  Q  N  Y  P  K  I  F  R  R  T  Q  I  *  I  F  C  Y  N  F  *  E  E  K  K  T  W  L  Y  M  L  N  S  S  F  S  L  C  H  P  F  Q  G  K  I  F  E  V  E  I  I  *  S  C  V  N  L  R  V  V  S  K  *  *  T  L  L  A  F  S  F  C  *  V  I  E  *  C  I  E  V  *  *  H  N  N  C  C  *  T  Q  Y  H  L  S  F  L  I  V  F  V  H  S  I  L  F  R  R  T  G  Q  V  *  V  Q  M  E  E  E  L  D  F  N  L  S  Q  N  T  F  F  V  C  F  K  R  L  *  N  K  I  *  Y  H  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06SLm0132E21.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="33872" PGL_stop="33491"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="33872" e_stop="33491"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="33872" e_stop="33491" e_length="382"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33872" stop="33491"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372331" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33871" stop="33491"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285646" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33871" stop="33491"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372332" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CACAAAGAAAAGCCTTTTGATGAAGACGATAGCGATGATGATGATGCCGATGACAAAGAAAATGACCCATCAAAGAGTCATCATCATGGGGATCATTGCTGTTCTAAACAGGATCATGGAGGAGAAGCTAGTACGAGTTTTTCGGAAGATCACTGATGTATTTGACTTGTAAGTTTGTTGAACTTTTTGTTAAGAAGGAAAAAAATGTTATTTTTGGGGTAAATTTGTTAATTGGTATTATTTGAGATCTTCTGTTGTTGGGAATCTGATTGAAATTTATGTTTCGATGACATGAAGTTGAACAATTGATATTAGTGTTACTTCTTATACTATTCTGCTTGTAAGAAAAAAATTTCATTTTTGAAGTGAATTTGAGTATTTG</gDNA_template>
            <first_frame> H  K  E  K  P  F  D  E  D  D  S  D  D  D  D  A  D  D  K  E  N  D  P  S  K  S  H  H  H  G  D  H  C  C  S  K  Q  D  H  G  G  E  A  S  T  S  F  S  E  D  H  *  C  I  *  L  V  S  L  L  N  F  L  L  R  R  K  K  M  L  F  L  G  *  I  C  *  L  V  L  F  E  I  F  C  C  W  E  S  D  *  N  L  C  F  D  D  M  K  L  N  N  *  Y  *  C  Y  F  L  Y  Y  S  A  C  K  K  K  I  S  F  L  K  *  I  *  V  F  </first_frame>
            <second_frame>  T  K  K  S  L  L  M  K  T  I  A  M  M  M  M  P  M  T  K  K  M  T  H  Q  R  V  I  I  M  G  I  I  A  V  L  N  R  I  M  E  E  K  L  V  R  V  F  R  K  I  T  D  V  F  D  L  *  V  C  *  T  F  C  *  E  G  K  K  C  Y  F  W  G  K  F  V  N  W  Y  Y  L  R  S  S  V  V  G  N  L  I  E  I  Y  V  S  M  T  *  S  *  T  I  D  I  S  V  T  S  Y  T  I  L  L  V  R  K  K  F  H  F  *  S  E  F  E  Y  L </second_frame>
            <third_frame>   Q  R  K  A  F  *  *  R  R  *  R  *  *  *  C  R  *  Q  R  K  *  P  I  K  E  S  S  S  W  G  S  L  L  F  *  T  G  S  W  R  R  S  *  Y  E  F  F  G  R  S  L  M  Y  L  T  C  K  F  V  E  L  F  V  K  K  E  K  N  V  I  F  G  V  N  L  L  I  G  I  I  *  D  L  L  L  L  G  I  *  L  K  F  M  F  R  *  H  E  V  E  Q  L  I  L  V  L  L  L  I  L  F  C  L  *  E  K  N  F  I  F  E  V  N  L  S  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06SLm0132E21.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="41832" PGL_stop="46292"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="41832" e_stop="42089"/>
            <exon e_start="42405" e_stop="42503"/>
            <exon e_start="43590" e_stop="43718"/>
            <exon e_start="43835" e_stop="43963"/>
            <exon e_start="44565" e_stop="44711"/>
            <exon e_start="45102" e_stop="45176"/>
            <exon e_start="45789" e_stop="46292"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.992" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.956" e_score="1.000"/>
          <exon-intron don_prob="0.475" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.952" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.900" acc_prob="0.931" e_score="1.000"/>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="41832" e_stop="42089" e_length="258"/>
          </exon>
          <intron i_serial="1" don_prob="0.992" acc_prob="0.999">
            <gDNA_intron_boundary i_start="42090" i_stop="42404" i_length="315"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="42405" e_stop="42503" e_length="99"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.956">
            <gDNA_intron_boundary i_start="42504" i_stop="43589" i_length="1086"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="43590" e_stop="43718" e_length="129"/>
          </exon>
          <intron i_serial="3" don_prob="0.475" acc_prob="0.999">
            <gDNA_intron_boundary i_start="43719" i_stop="43834" i_length="116"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="43835" e_stop="43963" e_length="129"/>
          </exon>
          <intron i_serial="4" don_prob="0.952" acc_prob="0.997">
            <gDNA_intron_boundary i_start="43964" i_stop="44564" i_length="601"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="44565" e_stop="44711" e_length="147"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="44712" i_stop="45101" i_length="390"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="45102" e_stop="45176" e_length="75"/>
          </exon>
          <intron i_serial="6" don_prob="0.900" acc_prob="0.931">
            <gDNA_intron_boundary i_start="45177" i_stop="45788" i_length="612"/>
          </intron>
          <exon e_serial="7" e_score="0.992">
            <gDNA_exon_boundary e_start="45789" e_stop="46292" e_length="504"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41832" stop="42089"/>
              <exon start="42405" stop="42503"/>
              <exon start="43590" stop="43718"/>
              <exon start="43835" stop="43963"/>
              <exon start="44565" stop="44711"/>
              <exon start="45102" stop="45176"/>
              <exon start="45789" stop="46075"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745308" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41843" stop="42089"/>
              <exon start="42405" stop="42503"/>
              <exon start="43590" stop="43718"/>
              <exon start="43835" stop="43963"/>
              <exon start="44565" stop="44664"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369888" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41843" stop="42089"/>
              <exon start="42405" stop="42503"/>
              <exon start="43590" stop="43718"/>
              <exon start="43835" stop="43927"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259445" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41843" stop="42089"/>
              <exon start="42405" stop="42503"/>
              <exon start="43590" stop="43718"/>
              <exon start="43835" stop="43857"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255286" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41850" stop="42089"/>
              <exon start="42405" stop="42503"/>
              <exon start="43590" stop="43718"/>
              <exon start="43835" stop="43963"/>
              <exon start="44565" stop="44697"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699976" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41850" stop="42089"/>
              <exon start="42405" stop="42503"/>
              <exon start="43590" stop="43718"/>
              <exon start="43835" stop="43963"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275580" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41851" stop="42089"/>
              <exon start="42405" stop="42503"/>
              <exon start="43590" stop="43718"/>
              <exon start="43835" stop="43963"/>
              <exon start="44565" stop="44603"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390158" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41851" stop="42089"/>
              <exon start="42405" stop="42503"/>
              <exon start="43590" stop="43718"/>
              <exon start="43835" stop="43963"/>
              <exon start="44565" stop="44596"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390101" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41852" stop="42089"/>
              <exon start="42405" stop="42503"/>
              <exon start="43590" stop="43718"/>
              <exon start="43835" stop="43963"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251596" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41852" stop="42089"/>
              <exon start="42405" stop="42503"/>
              <exon start="43590" stop="43718"/>
              <exon start="43835" stop="43963"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258585" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41852" stop="42089"/>
              <exon start="42405" stop="42503"/>
              <exon start="43590" stop="43718"/>
              <exon start="43835" stop="43868"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319211" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41852" stop="42089"/>
              <exon start="42405" stop="42503"/>
              <exon start="43590" stop="43718"/>
              <exon start="43835" stop="43866"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256552" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41852" stop="42089"/>
              <exon start="42405" stop="42503"/>
              <exon start="43590" stop="43694"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260200" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41852" stop="42089"/>
              <exon start="42405" stop="42503"/>
              <exon start="43590" stop="43666"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256949" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41852" stop="42089"/>
              <exon start="42405" stop="42503"/>
              <exon start="43590" stop="43665"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254781" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41853" stop="42089"/>
              <exon start="42405" stop="42503"/>
              <exon start="43590" stop="43718"/>
              <exon start="43835" stop="43963"/>
              <exon start="44565" stop="44711"/>
              <exon start="45102" stop="45176"/>
              <exon start="45789" stop="45855"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707434" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41854" stop="42089"/>
              <exon start="42405" stop="42503"/>
              <exon start="43590" stop="43718"/>
              <exon start="43835" stop="43963"/>
              <exon start="44565" stop="44622"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328991" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41862" stop="42089"/>
              <exon start="42405" stop="42503"/>
              <exon start="43590" stop="43718"/>
              <exon start="43835" stop="43963"/>
              <exon start="44565" stop="44711"/>
              <exon start="45102" stop="45176"/>
              <exon start="45789" stop="45862"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704965" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41863" stop="42089"/>
              <exon start="42405" stop="42503"/>
              <exon start="43590" stop="43718"/>
              <exon start="43835" stop="43963"/>
              <exon start="44565" stop="44698"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328867" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41863" stop="42089"/>
              <exon start="42405" stop="42503"/>
              <exon start="43590" stop="43718"/>
              <exon start="43835" stop="43963"/>
              <exon start="44565" stop="44674"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345487" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41863" stop="42089"/>
              <exon start="42405" stop="42503"/>
              <exon start="43590" stop="43718"/>
              <exon start="43835" stop="43963"/>
              <exon start="44565" stop="44584"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348447" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41869" stop="42089"/>
              <exon start="42405" stop="42503"/>
              <exon start="43590" stop="43718"/>
              <exon start="43835" stop="43875"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277396" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41872" stop="42089"/>
              <exon start="42405" stop="42503"/>
              <exon start="43590" stop="43718"/>
              <exon start="43835" stop="43963"/>
              <exon start="44565" stop="44701"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343131" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41887" stop="42089"/>
              <exon start="42405" stop="42503"/>
              <exon start="43590" stop="43718"/>
              <exon start="43835" stop="43929"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325958" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41893" stop="42089"/>
              <exon start="42405" stop="42503"/>
              <exon start="43590" stop="43718"/>
              <exon start="43835" stop="43920"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359334" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41920" stop="42073"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254565" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41926" stop="42089"/>
              <exon start="42405" stop="42503"/>
              <exon start="43590" stop="43688"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249968" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41927" stop="42089"/>
              <exon start="42405" stop="42503"/>
              <exon start="43590" stop="43718"/>
              <exon start="43835" stop="43931"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256065" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41929" stop="42089"/>
              <exon start="42405" stop="42503"/>
              <exon start="43590" stop="43718"/>
              <exon start="43835" stop="43929"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256112" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41957" stop="42089"/>
              <exon start="42405" stop="42503"/>
              <exon start="43590" stop="43718"/>
              <exon start="43835" stop="43963"/>
              <exon start="44565" stop="44648"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271659" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41961" stop="42089"/>
              <exon start="42405" stop="42503"/>
              <exon start="43590" stop="43718"/>
              <exon start="43835" stop="43963"/>
              <exon start="44565" stop="44711"/>
              <exon start="45102" stop="45176"/>
              <exon start="45789" stop="45855"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260683" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41961" stop="42089"/>
              <exon start="42405" stop="42503"/>
              <exon start="43590" stop="43718"/>
              <exon start="43835" stop="43888"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301568" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42452" stop="42503"/>
              <exon start="43590" stop="43718"/>
              <exon start="43835" stop="43963"/>
              <exon start="44565" stop="44711"/>
              <exon start="45102" stop="45174"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242466" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43683" stop="43718"/>
              <exon start="43835" stop="43963"/>
              <exon start="44565" stop="44711"/>
              <exon start="45102" stop="45176"/>
              <exon start="45789" stop="46091"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390371" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43897" stop="43963"/>
              <exon start="44565" stop="44711"/>
              <exon start="45102" stop="45176"/>
              <exon start="45789" stop="46209"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370115" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43913" stop="43963"/>
              <exon start="44565" stop="44711"/>
              <exon start="45102" stop="45176"/>
              <exon start="45789" stop="46091"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396138" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44601" stop="44711"/>
              <exon start="45102" stop="45176"/>
              <exon start="45789" stop="46045"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228944" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44667" stop="44711"/>
              <exon start="45102" stop="45176"/>
              <exon start="45789" stop="46065"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228978" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44671" stop="44711"/>
              <exon start="45102" stop="45176"/>
              <exon start="45789" stop="46067"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228848" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45115" stop="45176"/>
              <exon start="45789" stop="46065"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228882" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45120" stop="45176"/>
              <exon start="45789" stop="46292"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318172" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45799" stop="46266"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E691324" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45803" stop="46266"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E695164" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45825" stop="46209"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369887" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGTAAAAGAAAAAAAGAAAAACACTGAGATCTCTATTTAGCACGGAGCAGAAGCGCCATGGCTTCGTGCTGTTCATTGAGCTTCTCAACAGTCTCTTCAAAGCCTAACAAGCCTTACTCATCACCAATTTCTTCTTCTCTTGAGCTCCCCTTTACTTCCCAGTTGCCATTTTCTAAAAAATATTCACTTTATTCCAATCATACCCTTCTCCAAACTCAATGCCGGAAAACCCAATCACCGGATTGTCCCAGTTTCTTG : GTTGTGGGATCTGCGAAAAAGCAAGAACCTTTGAGGGTAATGATATCGGGAGCTCCTGCTTCTGGTAAAGGAACGCAATGCGAGCTCATTACCAAGAAG : TACGATTTGGTGCATATTGCTGCTGGAGATTTATTGAGGGCTGAAATTGCTGCAGGCACTGAAAATGGGAGGAGAGCAAAGGAGTATATGGATAAAGGACAATTGGTACCAAACGAGATAGTTGTAACG : ATGGTCAAAGAGCGGTTGATGTGTCCAGACTCTCAAGAAAAGGGTTGGCTTTTAGATGGATATCCTCGGAGCTTGTCTCAAGCAGTAGCTCTCAAAGAGTTCCAGCCAAACCTTTTCATTCTTCTGGAA : GTACCTGAAGAGATACTTGTTGAGAGAGTGGTTGGCCGTAGACTAGATCCTGTAACTGGGAGAATATACCATTTGAAGTATTCTCCGCCAGAGACCGATGAAATCGCTGCAAGGCTTACCCAGCGCTTTGATGATACAGAAGAAAAG : GTGAAGCTGCGTCTGCACACTCACCGTCAAAATGTGGAATCAGTTCTCTCAATGTACAAAGATACTATATTCCAG : GTGGACGGGAGCGTTTCCAAAGAGGAAGTATTTGCTCAAATTGATGGTGCATTAACTCAACTTCTTGAAGCAAAGGAGTGAAGATTTGGAACCGTAATGTCATAGAGATCAGGAAAAATCTGCAGAATGTACCATGTAATACTCAGGAGGATCATCGAAGACAAAAGAGTAACATTGTTGGTTGCTATCCCTCTTATACAAATGTATGAAATGTTTATGTATATCGTATTTGCTTCCAACTATCTATGTGGATATTCATTGAATCAGATTCAAAGTTTACTACAAAACTTGTTTTGTTGTAAGGCCCAGCTCGCTAGTGATATTGTTAGCTTCGAGTTTACACCTATCCGGCTTTAAGACGTCATTAGGGTGTAAGACCTGCTTATTTATGTACTCAACATATCTCATGTATTTTTGCCTATTTGGGACTCTTAATCATGGACATAAATACCCAGATTTCTGATTAATCCAACTTCTGAAGTTTCCAATCACAGCAGAAAAAAA</gDNA_template>
            <first_frame> C  K  R  K  K  E  K  H  *  D  L  Y  L  A  R  S  R  S  A  M  A  S  C  C  S  L  S  F  S  T  V  S  S  K  P  N  K  P  Y  S  S  P  I  S  S  S  L  E  L  P  F  T  S  Q  L  P  F  S  K  K  Y  S  L  Y  S  N  H  T  L  L  Q  T  Q  C  R  K  T  Q  S  P  D  C  P  S  F  L  :  V  V  G  S  A  K  K  Q  E  P  L  R  V  M  I  S  G  A  P  A  S  G  K  G  T  Q  C  E  L  I  T  K  K  :  Y  D  L  V  H  I  A  A  G  D  L  L  R  A  E  I  A  A  G  T  E  N  G  R  R  A  K  E  Y  M  D  K  G  Q  L  V  P  N  E  I  V  V  T  :  M  V  K  E  R  L  M  C  P  D  S  Q  E  K  G  W  L  L  D  G  Y  P  R  S  L  S  Q  A  V  A  L  K  E  F  Q  P  N  L  F  I  L  L  E  :  V  P  E  E  I  L  V  E  R  V  V  G  R  R  L  D  P  V  T  G  R  I  Y  H  L  K  Y  S  P  P  E  T  D  E  I  A  A  R  L  T  Q  R  F  D  D  T  E  E  K  :  V  K  L  R  L  H  T  H  R  Q  N  V  E  S  V  L  S  M  Y  K  D  T  I  F  Q  :  V  D  G  S  V  S  K  E  E  V  F  A  Q  I  D  G  A  L  T  Q  L  L  E  A  K  E  *  R  F  G  T  V  M  S  *  R  S  G  K  I  C  R  M  Y  H  V  I  L  R  R  I  I  E  D  K  R  V  T  L  L  V  A  I  P  L  I  Q  M  Y  E  M  F  M  Y  I  V  F  A  S  N  Y  L  C  G  Y  S  L  N  Q  I  Q  S  L  L  Q  N  L  F  C  C  K  A  Q  L  A  S  D  I  V  S  F  E  F  T  P  I  R  L  *  D  V  I  R  V  *  D  L  L  I  Y  V  L  N  I  S  H  V  F  L  P  I  W  D  S  *  S  W  T  *  I  P  R  F  L  I  N  P  T  S  E  V  S  N  H  S  R  K  K </first_frame>
            <second_frame>  V  K  E  K  K  K  N  T  E  I  S  I  *  H  G  A  E  A  P  W  L  R  A  V  H  *  A  S  Q  Q  S  L  Q  S  L  T  S  L  T  H  H  Q  F  L  L  L  L  S  S  P  L  L  P  S  C  H  F  L  K  N  I  H  F  I  P  I  I  P  F  S  K  L  N  A  G  K  P  N  H  R  I  V  P  V  S  W :   L  W  D  L  R  K  S  K  N  L  *  G  *  *  Y  R  E  L  L  L  L  V  K  E  R  N  A  S  S  L  P  R  S :   T  I  W  C  I  L  L  L  E  I  Y  *  G  L  K  L  L  Q  A  L  K  M  G  G  E  Q  R  S  I  W  I  K  D  N  W  Y  Q  T  R  *  L  *  R :   W  S  K  S  G  *  C  V  Q  T  L  K  K  R  V  G  F  *  M  D  I  L  G  A  C  L  K  Q  *  L  S  K  S  S  S  Q  T  F  S  F  F  W  K :   Y  L  K  R  Y  L  L  R  E  W  L  A  V  D  *  I  L  *  L  G  E  Y  T  I  *  S  I  L  R  Q  R  P  M  K  S  L  Q  G  L  P  S  A  L  M  I  Q  K  K  R :   *  S  C  V  C  T  L  T  V  K  M  W  N  Q  F  S  Q  C  T  K  I  L  Y  S  R :   W  T  G  A  F  P  K  R  K  Y  L  L  K  L  M  V  H  *  L  N  F  L  K  Q  R  S  E  D  L  E  P  *  C  H  R  D  Q  E  K  S  A  E  C  T  M  *  Y  S  G  G  S  S  K  T  K  E  *  H  C  W  L  L  S  L  L  Y  K  C  M  K  C  L  C  I  S  Y  L  L  P  T  I  Y  V  D  I  H  *  I  R  F  K  V  Y  Y  K  T  C  F  V  V  R  P  S  S  L  V  I  L  L  A  S  S  L  H  L  S  G  F  K  T  S  L  G  C  K  T  C  L  F  M  Y  S  T  Y  L  M  Y  F  C  L  F  G  T  L  N  H  G  H  K  Y  P  D  F  *  L  I  Q  L  L  K  F  P  I  T  A  E  K   </second_frame>
            <third_frame>   *  K  K  K  R  K  T  L  R  S  L  F  S  T  E  Q  K  R  H  G  F  V  L  F  I  E  L  L  N  S  L  F  K  A  *  Q  A  L  L  I  T  N  F  F  F  S  *  A  P  L  Y  F  P  V  A  I  F  *  K  I  F  T  L  F  Q  S  Y  P  S  P  N  S  M  P  E  N  P  I  T  G  L  S  Q  F  L   : G  C  G  I  C  E  K  A  R  T  F  E  G  N  D  I  G  S  S  C  F  W  *  R  N  A  M  R  A  H  Y  Q  E   : V  R  F  G  A  Y  C  C  W  R  F  I  E  G  *  N  C  C  R  H  *  K  W  E  E  S  K  G  V  Y  G  *  R  T  I  G  T  K  R  D  S  C  N   : D  G  Q  R  A  V  D  V  S  R  L  S  R  K  G  L  A  F  R  W  I  S  S  E  L  V  S  S  S  S  S  Q  R  V  P  A  K  P  F  H  S  S  G   : S  T  *  R  D  T  C  *  E  S  G  W  P  *  T  R  S  C  N  W  E  N  I  P  F  E  V  F  S  A  R  D  R  *  N  R  C  K  A  Y  P  A  L  *  *  Y  R  R  K   : G  E  A  A  S  A  H  S  P  S  K  C  G  I  S  S  L  N  V  Q  R  Y  Y  I  P   : G  G  R  E  R  F  Q  R  G  S  I  C  S  N  *  W  C  I  N  S  T  S  *  S  K  G  V  K  I  W  N  R  N  V  I  E  I  R  K  N  L  Q  N  V  P  C  N  T  Q  E  D  H  R  R  Q  K  S  N  I  V  G  C  Y  P  S  Y  T  N  V  *  N  V  Y  V  Y  R  I  C  F  Q  L  S  M  W  I  F  I  E  S  D  S  K  F  T  T  K  L  V  L  L  *  G  P  A  R  *  *  Y  C  *  L  R  V  Y  T  Y  P  A  L  R  R  H  *  G  V  R  P  A  Y  L  C  T  Q  H  I  S  C  I  F  A  Y  L  G  L  L  I  M  D  I  N  T  Q  I  S  D  *  S  N  F  *  S  F  Q  S  Q  Q  K  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0132E21.2" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41859" stop="42089"/>
                    <exon start="42405" stop="42503"/>
                    <exon start="43590" stop="43718"/>
                    <exon start="43835" stop="43963"/>
                    <exon start="44565" stop="44711"/>
                    <exon start="45102" stop="45176"/>
                    <exon start="45789" stop="45869"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>888</number_coding_nucleotides>
                  <number_encoded_amino_acids>296</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DLYLARSRSAMASCCSLSFSTVSSKPNKPYSSPISSSLELPFTSQLPFSKKYSLYSNHTLLQTQCRKTQSPDCPSFLVVGSAKKQEPLRVMISGAPASGKGTQCELITKKYDLVHIAAGDLLRAEIAAGTENGRRAKEYMDKGQLVPNEIVVTMVKERLMCPDSQEKGWLLDGYPRSLSQAVALKEFQPNLFILLEVPEEILVERVVGRRLDPVTGRIYHLKYSPPETDEIAARLTQRFDDTEEKVKLRLHTHRQNVESVLSMYKDTIFQVDGSVSKEEVFAQIDGALTQLLEAKE*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0132E21.2" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="45894" stop="46145"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>249</number_coding_nucleotides>
                  <number_encoded_amino_acids>83</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RSGKICRMYHVILRRIIEDKRVTLLVAIPLIQMYEMFMYIVFASNYLCGYSLNQIQSLLQNLFCCKAQLASDIVSFEFTPIRL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="41843" e_stop="42089"/>
            <exon e_start="42405" e_stop="42503"/>
            <exon e_start="43590" e_stop="43718"/>
            <exon e_start="43835" e_stop="43963"/>
            <exon e_start="44565" e_stop="44711"/>
            <exon e_start="45102" e_stop="45241"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.992" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.956" e_score="1.000"/>
          <exon-intron don_prob="0.475" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.952" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.986"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="41843" e_stop="42089" e_length="247"/>
          </exon>
          <intron i_serial="1" don_prob="0.992" acc_prob="0.999">
            <gDNA_intron_boundary i_start="42090" i_stop="42404" i_length="315"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="42405" e_stop="42503" e_length="99"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.956">
            <gDNA_intron_boundary i_start="42504" i_stop="43589" i_length="1086"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="43590" e_stop="43718" e_length="129"/>
          </exon>
          <intron i_serial="3" don_prob="0.475" acc_prob="0.999">
            <gDNA_intron_boundary i_start="43719" i_stop="43834" i_length="116"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="43835" e_stop="43963" e_length="129"/>
          </exon>
          <intron i_serial="4" don_prob="0.952" acc_prob="0.997">
            <gDNA_intron_boundary i_start="43964" i_stop="44564" i_length="601"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="44565" e_stop="44711" e_length="147"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="44712" i_stop="45101" i_length="390"/>
          </intron>
          <exon e_serial="6" e_score="0.986">
            <gDNA_exon_boundary e_start="45102" e_stop="45241" e_length="140"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41843" stop="42089"/>
              <exon start="42405" stop="42503"/>
              <exon start="43590" stop="43718"/>
              <exon start="43835" stop="43963"/>
              <exon start="44565" stop="44664"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369888" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41843" stop="42089"/>
              <exon start="42405" stop="42503"/>
              <exon start="43590" stop="43718"/>
              <exon start="43835" stop="43927"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259445" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41843" stop="42089"/>
              <exon start="42405" stop="42503"/>
              <exon start="43590" stop="43718"/>
              <exon start="43835" stop="43857"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255286" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41850" stop="42089"/>
              <exon start="42405" stop="42503"/>
              <exon start="43590" stop="43718"/>
              <exon start="43835" stop="43963"/>
              <exon start="44565" stop="44697"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699976" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41850" stop="42089"/>
              <exon start="42405" stop="42503"/>
              <exon start="43590" stop="43718"/>
              <exon start="43835" stop="43963"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275580" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41851" stop="42089"/>
              <exon start="42405" stop="42503"/>
              <exon start="43590" stop="43718"/>
              <exon start="43835" stop="43963"/>
              <exon start="44565" stop="44603"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390158" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41851" stop="42089"/>
              <exon start="42405" stop="42503"/>
              <exon start="43590" stop="43718"/>
              <exon start="43835" stop="43963"/>
              <exon start="44565" stop="44596"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390101" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41852" stop="42089"/>
              <exon start="42405" stop="42503"/>
              <exon start="43590" stop="43718"/>
              <exon start="43835" stop="43963"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251596" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41852" stop="42089"/>
              <exon start="42405" stop="42503"/>
              <exon start="43590" stop="43718"/>
              <exon start="43835" stop="43963"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258585" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41852" stop="42089"/>
              <exon start="42405" stop="42503"/>
              <exon start="43590" stop="43718"/>
              <exon start="43835" stop="43868"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319211" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41852" stop="42089"/>
              <exon start="42405" stop="42503"/>
              <exon start="43590" stop="43718"/>
              <exon start="43835" stop="43866"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256552" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41852" stop="42089"/>
              <exon start="42405" stop="42503"/>
              <exon start="43590" stop="43694"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260200" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41852" stop="42089"/>
              <exon start="42405" stop="42503"/>
              <exon start="43590" stop="43666"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256949" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41852" stop="42089"/>
              <exon start="42405" stop="42503"/>
              <exon start="43590" stop="43665"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254781" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41854" stop="42089"/>
              <exon start="42405" stop="42503"/>
              <exon start="43590" stop="43718"/>
              <exon start="43835" stop="43963"/>
              <exon start="44565" stop="44622"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328991" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41860" stop="42089"/>
              <exon start="42405" stop="42503"/>
              <exon start="43590" stop="43718"/>
              <exon start="43835" stop="43963"/>
              <exon start="44565" stop="44711"/>
              <exon start="45102" stop="45177"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704951" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41863" stop="42089"/>
              <exon start="42405" stop="42503"/>
              <exon start="43590" stop="43718"/>
              <exon start="43835" stop="43963"/>
              <exon start="44565" stop="44698"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328867" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41863" stop="42089"/>
              <exon start="42405" stop="42503"/>
              <exon start="43590" stop="43718"/>
              <exon start="43835" stop="43963"/>
              <exon start="44565" stop="44674"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345487" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41863" stop="42089"/>
              <exon start="42405" stop="42503"/>
              <exon start="43590" stop="43718"/>
              <exon start="43835" stop="43963"/>
              <exon start="44565" stop="44584"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348447" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41869" stop="42089"/>
              <exon start="42405" stop="42503"/>
              <exon start="43590" stop="43718"/>
              <exon start="43835" stop="43875"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277396" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41872" stop="42089"/>
              <exon start="42405" stop="42503"/>
              <exon start="43590" stop="43718"/>
              <exon start="43835" stop="43963"/>
              <exon start="44565" stop="44701"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343131" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41887" stop="42089"/>
              <exon start="42405" stop="42503"/>
              <exon start="43590" stop="43718"/>
              <exon start="43835" stop="43929"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325958" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41893" stop="42089"/>
              <exon start="42405" stop="42503"/>
              <exon start="43590" stop="43718"/>
              <exon start="43835" stop="43920"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359334" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41920" stop="42073"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254565" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41926" stop="42089"/>
              <exon start="42405" stop="42503"/>
              <exon start="43590" stop="43688"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249968" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41927" stop="42089"/>
              <exon start="42405" stop="42503"/>
              <exon start="43590" stop="43718"/>
              <exon start="43835" stop="43931"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256065" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41929" stop="42089"/>
              <exon start="42405" stop="42503"/>
              <exon start="43590" stop="43718"/>
              <exon start="43835" stop="43963"/>
              <exon start="44565" stop="44711"/>
              <exon start="45102" stop="45241"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261015" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41929" stop="42089"/>
              <exon start="42405" stop="42503"/>
              <exon start="43590" stop="43718"/>
              <exon start="43835" stop="43929"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256112" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41957" stop="42089"/>
              <exon start="42405" stop="42503"/>
              <exon start="43590" stop="43718"/>
              <exon start="43835" stop="43963"/>
              <exon start="44565" stop="44648"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271659" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41961" stop="42089"/>
              <exon start="42405" stop="42503"/>
              <exon start="43590" stop="43718"/>
              <exon start="43835" stop="43888"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301568" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42452" stop="42503"/>
              <exon start="43590" stop="43718"/>
              <exon start="43835" stop="43963"/>
              <exon start="44565" stop="44711"/>
              <exon start="45102" stop="45174"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242466" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAAGAAAAACACTGAGATCTCTATTTAGCACGGAGCAGAAGCGCCATGGCTTCGTGCTGTTCATTGAGCTTCTCAACAGTCTCTTCAAAGCCTAACAAGCCTTACTCATCACCAATTTCTTCTTCTCTTGAGCTCCCCTTTACTTCCCAGTTGCCATTTTCTAAAAAATATTCACTTTATTCCAATCATACCCTTCTCCAAACTCAATGCCGGAAAACCCAATCACCGGATTGTCCCAGTTTCTTG : GTTGTGGGATCTGCGAAAAAGCAAGAACCTTTGAGGGTAATGATATCGGGAGCTCCTGCTTCTGGTAAAGGAACGCAATGCGAGCTCATTACCAAGAAG : TACGATTTGGTGCATATTGCTGCTGGAGATTTATTGAGGGCTGAAATTGCTGCAGGCACTGAAAATGGGAGGAGAGCAAAGGAGTATATGGATAAAGGACAATTGGTACCAAACGAGATAGTTGTAACG : ATGGTCAAAGAGCGGTTGATGTGTCCAGACTCTCAAGAAAAGGGTTGGCTTTTAGATGGATATCCTCGGAGCTTGTCTCAAGCAGTAGCTCTCAAAGAGTTCCAGCCAAACCTTTTCATTCTTCTGGAA : GTACCTGAAGAGATACTTGTTGAGAGAGTGGTTGGCCGTAGACTAGATCCTGTAACTGGGAGAATATACCATTTGAAGTATTCTCCGCCAGAGACCGATGAAATCGCTGCAAGGCTTACCCAGCGCTTTGATGATACAGAAGAAAAG : GTGAAGCTGCGTCTGCACACTCACCGTCAAAATGTGGAATCAGTTCTCTCAATGTACAAAGATACTATATTCCAGGTATTCTTTTTGCCACAGATGTGGTGCAGTTGCTTCACTCGGGAATGCAGATTGAAACACTCATC</gDNA_template>
            <first_frame> K  R  K  T  L  R  S  L  F  S  T  E  Q  K  R  H  G  F  V  L  F  I  E  L  L  N  S  L  F  K  A  *  Q  A  L  L  I  T  N  F  F  F  S  *  A  P  L  Y  F  P  V  A  I  F  *  K  I  F  T  L  F  Q  S  Y  P  S  P  N  S  M  P  E  N  P  I  T  G  L  S  Q  F  L   : G  C  G  I  C  E  K  A  R  T  F  E  G  N  D  I  G  S  S  C  F  W  *  R  N  A  M  R  A  H  Y  Q  E   : V  R  F  G  A  Y  C  C  W  R  F  I  E  G  *  N  C  C  R  H  *  K  W  E  E  S  K  G  V  Y  G  *  R  T  I  G  T  K  R  D  S  C  N   : D  G  Q  R  A  V  D  V  S  R  L  S  R  K  G  L  A  F  R  W  I  S  S  E  L  V  S  S  S  S  S  Q  R  V  P  A  K  P  F  H  S  S  G   : S  T  *  R  D  T  C  *  E  S  G  W  P  *  T  R  S  C  N  W  E  N  I  P  F  E  V  F  S  A  R  D  R  *  N  R  C  K  A  Y  P  A  L  *  *  Y  R  R  K   : G  E  A  A  S  A  H  S  P  S  K  C  G  I  S  S  L  N  V  Q  R  Y  Y  I  P  G  I  L  F  A  T  D  V  V  Q  L  L  H  S  G  M  Q  I  E  T  L  I </first_frame>
            <second_frame>  K  E  K  H  *  D  L  Y  L  A  R  S  R  S  A  M  A  S  C  C  S  L  S  F  S  T  V  S  S  K  P  N  K  P  Y  S  S  P  I  S  S  S  L  E  L  P  F  T  S  Q  L  P  F  S  K  K  Y  S  L  Y  S  N  H  T  L  L  Q  T  Q  C  R  K  T  Q  S  P  D  C  P  S  F  L  :  V  V  G  S  A  K  K  Q  E  P  L  R  V  M  I  S  G  A  P  A  S  G  K  G  T  Q  C  E  L  I  T  K  K  :  Y  D  L  V  H  I  A  A  G  D  L  L  R  A  E  I  A  A  G  T  E  N  G  R  R  A  K  E  Y  M  D  K  G  Q  L  V  P  N  E  I  V  V  T  :  M  V  K  E  R  L  M  C  P  D  S  Q  E  K  G  W  L  L  D  G  Y  P  R  S  L  S  Q  A  V  A  L  K  E  F  Q  P  N  L  F  I  L  L  E  :  V  P  E  E  I  L  V  E  R  V  V  G  R  R  L  D  P  V  T  G  R  I  Y  H  L  K  Y  S  P  P  E  T  D  E  I  A  A  R  L  T  Q  R  F  D  D  T  E  E  K  :  V  K  L  R  L  H  T  H  R  Q  N  V  E  S  V  L  S  M  Y  K  D  T  I  F  Q  V  F  F  L  P  Q  M  W  C  S  C  F  T  R  E  C  R  L  K  H  S   </second_frame>
            <third_frame>   K  K  N  T  E  I  S  I  *  H  G  A  E  A  P  W  L  R  A  V  H  *  A  S  Q  Q  S  L  Q  S  L  T  S  L  T  H  H  Q  F  L  L  L  L  S  S  P  L  L  P  S  C  H  F  L  K  N  I  H  F  I  P  I  I  P  F  S  K  L  N  A  G  K  P  N  H  R  I  V  P  V  S  W :   L  W  D  L  R  K  S  K  N  L  *  G  *  *  Y  R  E  L  L  L  L  V  K  E  R  N  A  S  S  L  P  R  S :   T  I  W  C  I  L  L  L  E  I  Y  *  G  L  K  L  L  Q  A  L  K  M  G  G  E  Q  R  S  I  W  I  K  D  N  W  Y  Q  T  R  *  L  *  R :   W  S  K  S  G  *  C  V  Q  T  L  K  K  R  V  G  F  *  M  D  I  L  G  A  C  L  K  Q  *  L  S  K  S  S  S  Q  T  F  S  F  F  W  K :   Y  L  K  R  Y  L  L  R  E  W  L  A  V  D  *  I  L  *  L  G  E  Y  T  I  *  S  I  L  R  Q  R  P  M  K  S  L  Q  G  L  P  S  A  L  M  I  Q  K  K  R :   *  S  C  V  C  T  L  T  V  K  M  W  N  Q  F  S  Q  C  T  K  I  L  Y  S  R  Y  S  F  C  H  R  C  G  A  V  A  S  L  G  N  A  D  *  N  T  H  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0132E21.2" strand="+"/>
                <serials PGL_serial="6" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41859" stop="42089"/>
                    <exon start="42405" stop="42503"/>
                    <exon start="43590" stop="43718"/>
                    <exon start="43835" stop="43963"/>
                    <exon start="44565" stop="44711"/>
                    <exon start="45102" stop="45239"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>873</number_coding_nucleotides>
                  <number_encoded_amino_acids>291</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DLYLARSRSAMASCCSLSFSTVSSKPNKPYSSPISSSLELPFTSQLPFSKKYSLYSNHTLLQTQCRKTQSPDCPSFLVVGSAKKQEPLRVMISGAPASGKGTQCELITKKYDLVHIAAGDLLRAEIAAGTENGRRAKEYMDKGQLVPNEIVVTMVKERLMCPDSQEKGWLLDGYPRSLSQAVALKEFQPNLFILLEVPEEILVERVVGRRLDPVTGRIYHLKYSPPETDEIAARLTQRFDDTEEKVKLRLHTHRQNVESVLSMYKDTIFQVFFLPQMWCSCFTRECRLKHS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="42403" e_stop="42503"/>
            <exon e_start="43590" e_stop="43718"/>
            <exon e_start="43835" e_stop="43963"/>
            <exon e_start="44565" e_stop="44711"/>
            <exon e_start="45102" e_stop="45176"/>
            <exon e_start="45789" e_stop="46292"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.956" e_score="0.990"/>
          <exon-intron don_prob="0.475" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.952" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.900" acc_prob="0.931" e_score="1.000"/>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.990">
            <gDNA_exon_boundary e_start="42403" e_stop="42503" e_length="101"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.956">
            <gDNA_intron_boundary i_start="42504" i_stop="43589" i_length="1086"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="43590" e_stop="43718" e_length="129"/>
          </exon>
          <intron i_serial="2" don_prob="0.475" acc_prob="0.999">
            <gDNA_intron_boundary i_start="43719" i_stop="43834" i_length="116"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="43835" e_stop="43963" e_length="129"/>
          </exon>
          <intron i_serial="3" don_prob="0.952" acc_prob="0.997">
            <gDNA_intron_boundary i_start="43964" i_stop="44564" i_length="601"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="44565" e_stop="44711" e_length="147"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="44712" i_stop="45101" i_length="390"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="45102" e_stop="45176" e_length="75"/>
          </exon>
          <intron i_serial="5" don_prob="0.900" acc_prob="0.931">
            <gDNA_intron_boundary i_start="45177" i_stop="45788" i_length="612"/>
          </intron>
          <exon e_serial="6" e_score="0.992">
            <gDNA_exon_boundary e_start="45789" e_stop="46292" e_length="504"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42403" stop="42503"/>
              <exon start="43590" stop="43718"/>
              <exon start="43835" stop="43963"/>
              <exon start="44565" stop="44582"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283973" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42452" stop="42503"/>
              <exon start="43590" stop="43718"/>
              <exon start="43835" stop="43963"/>
              <exon start="44565" stop="44711"/>
              <exon start="45102" stop="45174"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242466" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43683" stop="43718"/>
              <exon start="43835" stop="43963"/>
              <exon start="44565" stop="44711"/>
              <exon start="45102" stop="45176"/>
              <exon start="45789" stop="46091"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390371" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43897" stop="43963"/>
              <exon start="44565" stop="44711"/>
              <exon start="45102" stop="45176"/>
              <exon start="45789" stop="46209"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370115" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43913" stop="43963"/>
              <exon start="44565" stop="44711"/>
              <exon start="45102" stop="45176"/>
              <exon start="45789" stop="46091"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396138" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44601" stop="44711"/>
              <exon start="45102" stop="45176"/>
              <exon start="45789" stop="46045"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228944" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44667" stop="44711"/>
              <exon start="45102" stop="45176"/>
              <exon start="45789" stop="46065"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228978" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44671" stop="44711"/>
              <exon start="45102" stop="45176"/>
              <exon start="45789" stop="46067"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228848" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45115" stop="45176"/>
              <exon start="45789" stop="46065"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228882" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45120" stop="45176"/>
              <exon start="45789" stop="46292"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318172" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45799" stop="46266"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E691324" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45803" stop="46266"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E695164" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45825" stop="46209"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369887" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGGTTGTGGGATCTGCGAAAAAGCAAGAACCTTTGAGGGTAATGATATCGGGAGCTCCTGCTTCTGGTAAAGGAACGCAATGCGAGCTCATTACCAAGAAG : TACGATTTGGTGCATATTGCTGCTGGAGATTTATTGAGGGCTGAAATTGCTGCAGGCACTGAAAATGGGAGGAGAGCAAAGGAGTATATGGATAAAGGACAATTGGTACCAAACGAGATAGTTGTAACG : ATGGTCAAAGAGCGGTTGATGTGTCCAGACTCTCAAGAAAAGGGTTGGCTTTTAGATGGATATCCTCGGAGCTTGTCTCAAGCAGTAGCTCTCAAAGAGTTCCAGCCAAACCTTTTCATTCTTCTGGAA : GTACCTGAAGAGATACTTGTTGAGAGAGTGGTTGGCCGTAGACTAGATCCTGTAACTGGGAGAATATACCATTTGAAGTATTCTCCGCCAGAGACCGATGAAATCGCTGCAAGGCTTACCCAGCGCTTTGATGATACAGAAGAAAAG : GTGAAGCTGCGTCTGCACACTCACCGTCAAAATGTGGAATCAGTTCTCTCAATGTACAAAGATACTATATTCCAG : GTGGACGGGAGCGTTTCCAAAGAGGAAGTATTTGCTCAAATTGATGGTGCATTAACTCAACTTCTTGAAGCAAAGGAGTGAAGATTTGGAACCGTAATGTCATAGAGATCAGGAAAAATCTGCAGAATGTACCATGTAATACTCAGGAGGATCATCGAAGACAAAAGAGTAACATTGTTGGTTGCTATCCCTCTTATACAAATGTATGAAATGTTTATGTATATCGTATTTGCTTCCAACTATCTATGTGGATATTCATTGAATCAGATTCAAAGTTTACTACAAAACTTGTTTTGTTGTAAGGCCCAGCTCGCTAGTGATATTGTTAGCTTCGAGTTTACACCTATCCGGCTTTAAGACGTCATTAGGGTGTAAGACCTGCTTATTTATGTACTCAACATATCTCATGTATTTTTGCCTATTTGGGACTCTTAATCATGGACATAAATACCCAGATTTCTGATTAATCCAACTTCTGAAGTTTCCAATCACAGCAGAAAAAAA</gDNA_template>
            <first_frame> R  L  W  D  L  R  K  S  K  N  L  *  G  *  *  Y  R  E  L  L  L  L  V  K  E  R  N  A  S  S  L  P  R  S :   T  I  W  C  I  L  L  L  E  I  Y  *  G  L  K  L  L  Q  A  L  K  M  G  G  E  Q  R  S  I  W  I  K  D  N  W  Y  Q  T  R  *  L  *  R :   W  S  K  S  G  *  C  V  Q  T  L  K  K  R  V  G  F  *  M  D  I  L  G  A  C  L  K  Q  *  L  S  K  S  S  S  Q  T  F  S  F  F  W  K :   Y  L  K  R  Y  L  L  R  E  W  L  A  V  D  *  I  L  *  L  G  E  Y  T  I  *  S  I  L  R  Q  R  P  M  K  S  L  Q  G  L  P  S  A  L  M  I  Q  K  K  R :   *  S  C  V  C  T  L  T  V  K  M  W  N  Q  F  S  Q  C  T  K  I  L  Y  S  R :   W  T  G  A  F  P  K  R  K  Y  L  L  K  L  M  V  H  *  L  N  F  L  K  Q  R  S  E  D  L  E  P  *  C  H  R  D  Q  E  K  S  A  E  C  T  M  *  Y  S  G  G  S  S  K  T  K  E  *  H  C  W  L  L  S  L  L  Y  K  C  M  K  C  L  C  I  S  Y  L  L  P  T  I  Y  V  D  I  H  *  I  R  F  K  V  Y  Y  K  T  C  F  V  V  R  P  S  S  L  V  I  L  L  A  S  S  L  H  L  S  G  F  K  T  S  L  G  C  K  T  C  L  F  M  Y  S  T  Y  L  M  Y  F  C  L  F  G  T  L  N  H  G  H  K  Y  P  D  F  *  L  I  Q  L  L  K  F  P  I  T  A  E  K   </first_frame>
            <second_frame>  G  C  G  I  C  E  K  A  R  T  F  E  G  N  D  I  G  S  S  C  F  W  *  R  N  A  M  R  A  H  Y  Q  E   : V  R  F  G  A  Y  C  C  W  R  F  I  E  G  *  N  C  C  R  H  *  K  W  E  E  S  K  G  V  Y  G  *  R  T  I  G  T  K  R  D  S  C  N   : D  G  Q  R  A  V  D  V  S  R  L  S  R  K  G  L  A  F  R  W  I  S  S  E  L  V  S  S  S  S  S  Q  R  V  P  A  K  P  F  H  S  S  G   : S  T  *  R  D  T  C  *  E  S  G  W  P  *  T  R  S  C  N  W  E  N  I  P  F  E  V  F  S  A  R  D  R  *  N  R  C  K  A  Y  P  A  L  *  *  Y  R  R  K   : G  E  A  A  S  A  H  S  P  S  K  C  G  I  S  S  L  N  V  Q  R  Y  Y  I  P   : G  G  R  E  R  F  Q  R  G  S  I  C  S  N  *  W  C  I  N  S  T  S  *  S  K  G  V  K  I  W  N  R  N  V  I  E  I  R  K  N  L  Q  N  V  P  C  N  T  Q  E  D  H  R  R  Q  K  S  N  I  V  G  C  Y  P  S  Y  T  N  V  *  N  V  Y  V  Y  R  I  C  F  Q  L  S  M  W  I  F  I  E  S  D  S  K  F  T  T  K  L  V  L  L  *  G  P  A  R  *  *  Y  C  *  L  R  V  Y  T  Y  P  A  L  R  R  H  *  G  V  R  P  A  Y  L  C  T  Q  H  I  S  C  I  F  A  Y  L  G  L  L  I  M  D  I  N  T  Q  I  S  D  *  S  N  F  *  S  F  Q  S  Q  Q  K  K  </second_frame>
            <third_frame>   V  V  G  S  A  K  K  Q  E  P  L  R  V  M  I  S  G  A  P  A  S  G  K  G  T  Q  C  E  L  I  T  K  K  :  Y  D  L  V  H  I  A  A  G  D  L  L  R  A  E  I  A  A  G  T  E  N  G  R  R  A  K  E  Y  M  D  K  G  Q  L  V  P  N  E  I  V  V  T  :  M  V  K  E  R  L  M  C  P  D  S  Q  E  K  G  W  L  L  D  G  Y  P  R  S  L  S  Q  A  V  A  L  K  E  F  Q  P  N  L  F  I  L  L  E  :  V  P  E  E  I  L  V  E  R  V  V  G  R  R  L  D  P  V  T  G  R  I  Y  H  L  K  Y  S  P  P  E  T  D  E  I  A  A  R  L  T  Q  R  F  D  D  T  E  E  K  :  V  K  L  R  L  H  T  H  R  Q  N  V  E  S  V  L  S  M  Y  K  D  T  I  F  Q  :  V  D  G  S  V  S  K  E  E  V  F  A  Q  I  D  G  A  L  T  Q  L  L  E  A  K  E  *  R  F  G  T  V  M  S  *  R  S  G  K  I  C  R  M  Y  H  V  I  L  R  R  I  I  E  D  K  R  V  T  L  L  V  A  I  P  L  I  Q  M  Y  E  M  F  M  Y  I  V  F  A  S  N  Y  L  C  G  Y  S  L  N  Q  I  Q  S  L  L  Q  N  L  F  C  C  K  A  Q  L  A  S  D  I  V  S  F  E  F  T  P  I  R  L  *  D  V  I  R  V  *  D  L  L  I  Y  V  L  N  I  S  H  V  F  L  P  I  W  D  S  *  S  W  T  *  I  P  R  F  L  I  N  P  T  S  E  V  S  N  H  S  R  K  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0132E21.2" strand="+"/>
                <serials PGL_serial="6" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="42405" stop="42503"/>
                    <exon start="43590" stop="43718"/>
                    <exon start="43835" stop="43963"/>
                    <exon start="44565" stop="44711"/>
                    <exon start="45102" stop="45176"/>
                    <exon start="45789" stop="45869"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>657</number_coding_nucleotides>
                  <number_encoded_amino_acids>219</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VVGSAKKQEPLRVMISGAPASGKGTQCELITKKYDLVHIAAGDLLRAEIAAGTENGRRAKEYMDKGQLVPNEIVVTMVKERLMCPDSQEKGWLLDGYPRSLSQAVALKEFQPNLFILLEVPEEILVERVVGRRLDPVTGRIYHLKYSPPETDEIAARLTQRFDDTEEKVKLRLHTHRQNVESVLSMYKDTIFQVDGSVSKEEVFAQIDGALTQLLEAKE*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0132E21.2" strand="+"/>
                <serials PGL_serial="6" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="45894" stop="46145"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>249</number_coding_nucleotides>
                  <number_encoded_amino_acids>83</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RSGKICRMYHVILRRIIEDKRVTLLVAIPLIQMYEMFMYIVFASNYLCGYSLNQIQSLLQNLFCCKAQLASDIVSFEFTPIRL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="48774" PGL_stop="47762"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="48774" e_stop="47762"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="48774" e_stop="47762" e_length="1013"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48774" stop="48054"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706915" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48353" stop="47762"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261075" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48314" stop="47878"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551523" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48314" stop="47878"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689024" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCAAGCTGAAAAAATTATGGAAAATTGAGCTGTTTCAGAATAAGTTGACAGGGGAACTTCCTGTAGAACTGGCAGAGCTCTCTCTTTTGCAGGAATTTGATATCTCTAGCAACCATATGTATGGGAAGCTGCCTCCAGAAATTGGGAACCTGAAGAAGTTAACAGTTTTTCATGTATTCATGAATAACTTCTCTGGTGAAATTCCTCCTGGTTTTGGAGATATGCAGCATCTTAATGGCTTTTCCGTGTACAGGAACAATTTTTCTGGGGCATTTCCAGCAAATCTTGGTCGGTTTTCGCCCCTGAATAGCATAGACATATCTGAAAACAAGTTTACTGGTGGATTCCCAAAGTACTTGTGCCAAAATGGGAACCTGCAGTTTTTGCTAGCTATTGAGAACAGTTTCTCAGGGGAGTTTCCGAGTACTTACTCGTCGTGCAAGCCTTTACAGAGATTGAGGGTCAGTAAGAATCAACTTTCTGGGAAAATTCCCAGTGATGTATGGGGACTTCCAAATGTACTGATGGTGGATTTCAGTGATAACGAATTCAGTGGAACTATGTCCCCGGAAATTGGGGCTGCTACTAGCCTGAATCAGTTGGTATTATCAAATAACAGATTTTCAGGTGAGCTTCCAAAAGAACTTGGGAAACTCACACAGTTGGAAAGGCTTTACTTGGATAACAATAACTTCTCGGGTGCAATACCTTCTGAACTTGGAAAACTAAAGCAAATTTCATCTTTGCATTTGGAGAAAAACTCATTCTCCGGGACTATCCCATCAGAATTGGGTGAATTTTCTAGGCTTGCAGACCTGAATCTTGCTTCAAATCTTCTTACAGGTAGCATTCCCAATTCCTTATCAATAATGACCTCTTTGAACTCTCTGAATCTTTCACACAACAGACTCACTGGTACAATACCAACTAGCTTGGACAATCTGAAGCTGTCTTCATTGGATCTCTCTAACAACCAGCTATCAGGAGAGGTATCATTAGATCTTTTAACGCTG</gDNA_template>
            <first_frame> A  S  *  K  N  Y  G  K  L  S  C  F  R  I  S  *  Q  G  N  F  L  *  N  W  Q  S  S  L  F  C  R  N  L  I  S  L  A  T  I  C  M  G  S  C  L  Q  K  L  G  T  *  R  S  *  Q  F  F  M  Y  S  *  I  T  S  L  V  K  F  L  L  V  L  E  I  C  S  I  L  M  A  F  P  C  T  G  T  I  F  L  G  H  F  Q  Q  I  L  V  G  F  R  P  *  I  A  *  T  Y  L  K  T  S  L  L  V  D  S  Q  S  T  C  A  K  M  G  T  C  S  F  C  *  L  L  R  T  V  S  Q  G  S  F  R  V  L  T  R  R  A  S  L  Y  R  D  *  G  S  V  R  I  N  F  L  G  K  F  P  V  M  Y  G  D  F  Q  M  Y  *  W  W  I  S  V  I  T  N  S  V  E  L  C  P  R  K  L  G  L  L  L  A  *  I  S  W  Y  Y  Q  I  T  D  F  Q  V  S  F  Q  K  N  L  G  N  S  H  S  W  K  G  F  T  W  I  T  I  T  S  R  V  Q  Y  L  L  N  L  E  N  *  S  K  F  H  L  C  I  W  R  K  T  H  S  P  G  L  S  H  Q  N  W  V  N  F  L  G  L  Q  T  *  I  L  L  Q  I  F  L  Q  V  A  F  P  I  P  Y  Q  *  *  P  L  *  T  L  *  I  F  H  T  T  D  S  L  V  Q  Y  Q  L  A  W  T  I  *  S  C  L  H  W  I  S  L  T  T  S  Y  Q  E  R  Y  H  *  I  F  *  R   </first_frame>
            <second_frame>  Q  A  E  K  I  M  E  N  *  A  V  S  E  *  V  D  R  G  T  S  C  R  T  G  R  A  L  S  F  A  G  I  *  Y  L  *  Q  P  Y  V  W  E  A  A  S  R  N  W  E  P  E  E  V  N  S  F  S  C  I  H  E  *  L  L  W  *  N  S  S  W  F  W  R  Y  A  A  S  *  W  L  F  R  V  Q  E  Q  F  F  W  G  I  S  S  K  S  W  S  V  F  A  P  E  *  H  R  H  I  *  K  Q  V  Y  W  W  I  P  K  V  L  V  P  K  W  E  P  A  V  F  A  S  Y  *  E  Q  F  L  R  G  V  S  E  Y  L  L  V  V  Q  A  F  T  E  I  E  G  Q  *  E  S  T  F  W  E  N  S  Q  *  C  M  G  T  S  K  C  T  D  G  G  F  Q  *  *  R  I  Q  W  N  Y  V  P  G  N  W  G  C  Y  *  P  E  S  V  G  I  I  K  *  Q  I  F  R  *  A  S  K  R  T  W  E  T  H  T  V  G  K  A  L  L  G  *  Q  *  L  L  G  C  N  T  F  *  T  W  K  T  K  A  N  F  I  F  A  F  G  E  K  L  I  L  R  D  Y  P  I  R  I  G  *  I  F  *  A  C  R  P  E  S  C  F  K  S  S  Y  R  *  H  S  Q  F  L  I  N  N  D  L  F  E  L  S  E  S  F  T  Q  Q  T  H  W  Y  N  T  N  *  L  G  Q  S  E  A  V  F  I  G  S  L  *  Q  P  A  I  R  R  G  I  I  R  S  F  N  A  </second_frame>
            <third_frame>   K  L  K  K  L  W  K  I  E  L  F  Q  N  K  L  T  G  E  L  P  V  E  L  A  E  L  S  L  L  Q  E  F  D  I  S  S  N  H  M  Y  G  K  L  P  P  E  I  G  N  L  K  K  L  T  V  F  H  V  F  M  N  N  F  S  G  E  I  P  P  G  F  G  D  M  Q  H  L  N  G  F  S  V  Y  R  N  N  F  S  G  A  F  P  A  N  L  G  R  F  S  P  L  N  S  I  D  I  S  E  N  K  F  T  G  G  F  P  K  Y  L  C  Q  N  G  N  L  Q  F  L  L  A  I  E  N  S  F  S  G  E  F  P  S  T  Y  S  S  C  K  P  L  Q  R  L  R  V  S  K  N  Q  L  S  G  K  I  P  S  D  V  W  G  L  P  N  V  L  M  V  D  F  S  D  N  E  F  S  G  T  M  S  P  E  I  G  A  A  T  S  L  N  Q  L  V  L  S  N  N  R  F  S  G  E  L  P  K  E  L  G  K  L  T  Q  L  E  R  L  Y  L  D  N  N  N  F  S  G  A  I  P  S  E  L  G  K  L  K  Q  I  S  S  L  H  L  E  K  N  S  F  S  G  T  I  P  S  E  L  G  E  F  S  R  L  A  D  L  N  L  A  S  N  L  L  T  G  S  I  P  N  S  L  S  I  M  T  S  L  N  S  L  N  L  S  H  N  R  L  T  G  T  I  P  T  S  L  D  N  L  K  L  S  S  L  D  L  S  N  N  Q  L  S  G  E  V  S  L  D  L  L  T  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0132E21.2" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="48772" stop="47762"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1011</number_coding_nucleotides>
                  <number_encoded_amino_acids>337</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KLKKLWKIELFQNKLTGELPVELAELSLLQEFDISSNHMYGKLPPEIGNLKKLTVFHVFMNNFSGEIPPGFGDMQHLNGFSVYRNNFSGAFPANLGRFSPLNSIDISENKFTGGFPKYLCQNGNLQFLLAIENSFSGEFPSTYSSCKPLQRLRVSKNQLSGKIPSDVWGLPNVLMVDFSDNEFSGTMSPEIGAATSLNQLVLSNNRFSGELPKELGKLTQLERLYLDNNNFSGAIPSELGKLKQISSLHLEKNSFSGTIPSELGEFSRLADLNLASNLLTGSIPNSLSIMTSLNSLNLSHNRLTGTIPTSLDNLKLSSLDLSNNQLSGEVSLDLLTL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="65074" PGL_stop="65528"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="65074" e_stop="65528"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="65074" e_stop="65528" e_length="455"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65074" stop="65528"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355524" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAACCTATTCACAAATGATATATCCAATTCCTGATAGGAGCTTGTGGAATGAGGCTGGGGAGGGTACAGACGGTGGGGGAGCAAATGTTGATATTATAATTCGACCACCAAAAACCCGACGTCCTCCTGGCAGGCCCAAAAAGAAGGTTCTTCGCATAGAGAGTTTCAAGCGTCCAAAGAGAGTCGTTCAATGTGGTCGATGCCATATGTTGGGACATTCTCAGAAAAAATGCTCGTTGCCTAGTTAAATCCTTGGTTAGTTGCCAGCTTTCTTTGCTCATGCCGAAAACTTTCATTAAAGAGTCTCAAGCTGTATGTATTTTAGTAATGGCTTAGTCATGAGATTGTTACTTGGCCTCTGCCTTATCAGTTCTGCAGTTGTCTTTGAATATATCAGGAACATATTGTGTACCTTGTACTTCATAATACTATATGGCTAATTGAGTTCCCATCGA</gDNA_template>
            <first_frame> K  P  I  H  K  *  Y  I  Q  F  L  I  G  A  C  G  M  R  L  G  R  V  Q  T  V  G  E  Q  M  L  I  L  *  F  D  H  Q  K  P  D  V  L  L  A  G  P  K  R  R  F  F  A  *  R  V  S  S  V  Q  R  E  S  F  N  V  V  D  A  I  C  W  D  I  L  R  K  N  A  R  C  L  V  K  S  L  V  S  C  Q  L  S  L  L  M  P  K  T  F  I  K  E  S  Q  A  V  C  I  L  V  M  A  *  S  *  D  C  Y  L  A  S  A  L  S  V  L  Q  L  S  L  N  I  S  G  T  Y  C  V  P  C  T  S  *  Y  Y  M  A  N  *  V  P  I   </first_frame>
            <second_frame>  N  L  F  T  N  D  I  S  N  S  *  *  E  L  V  E  *  G  W  G  G  Y  R  R  W  G  S  K  C  *  Y  Y  N  S  T  T  K  N  P  T  S  S  W  Q  A  Q  K  E  G  S  S  H  R  E  F  Q  A  S  K  E  S  R  S  M  W  S  M  P  Y  V  G  T  F  S  E  K  M  L  V  A  *  L  N  P  W  L  V  A  S  F  L  C  S  C  R  K  L  S  L  K  S  L  K  L  Y  V  F  *  *  W  L  S  H  E  I  V  T  W  P  L  P  Y  Q  F  C  S  C  L  *  I  Y  Q  E  H  I  V  Y  L  V  L  H  N  T  I  W  L  I  E  F  P  S  </second_frame>
            <third_frame>   T  Y  S  Q  M  I  Y  P  I  P  D  R  S  L  W  N  E  A  G  E  G  T  D  G  G  G  A  N  V  D  I  I  I  R  P  P  K  T  R  R  P  P  G  R  P  K  K  K  V  L  R  I  E  S  F  K  R  P  K  R  V  V  Q  C  G  R  C  H  M  L  G  H  S  Q  K  K  C  S  L  P  S  *  I  L  G  *  L  P  A  F  F  A  H  A  E  N  F  H  *  R  V  S  S  C  M  Y  F  S  N  G  L  V  M  R  L  L  L  G  L  C  L  I  S  S  A  V  V  F  E  Y  I  R  N  I  L  C  T  L  Y  F  I  I  L  Y  G  *  L  S  S  H  R </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0132E21.2" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="65076" stop="65321"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>243</number_coding_nucleotides>
                  <number_encoded_amino_acids>81</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TYSQMIYPIPDRSLWNEAGEGTDGGGANVDIIIRPPKTRRPPGRPKKKVLRIESFKRPKRVVQCGRCHMLGHSQKKCSLPS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="70103" PGL_stop="66064"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="70103" e_stop="69375"/>
            <exon e_start="67103" e_stop="66930"/>
            <exon e_start="66804" e_stop="66064"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.946" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="70103" e_stop="69375" e_length="729"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.978">
            <gDNA_intron_boundary i_start="69374" i_stop="67104" i_length="2271"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="67103" e_stop="66930" e_length="174"/>
          </exon>
          <intron i_serial="2" don_prob="0.993" acc_prob="0.946">
            <gDNA_intron_boundary i_start="66929" i_stop="66805" i_length="125"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="66804" e_stop="66064" e_length="741"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70103" stop="69375"/>
              <exon start="67103" stop="67050"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543618" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70102" stop="69567"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304538" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70100" stop="69375"/>
              <exon start="67103" stop="66930"/>
              <exon start="66804" stop="66075"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E744710" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69971" stop="69375"/>
              <exon start="67103" stop="66930"/>
              <exon start="66804" stop="66712"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700190" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69952" stop="69375"/>
              <exon start="67103" stop="67058"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211584" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69656" stop="69375"/>
              <exon start="67103" stop="66930"/>
              <exon start="66804" stop="66605"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214628" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69599" stop="69375"/>
              <exon start="67103" stop="66930"/>
              <exon start="66804" stop="66773"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308119" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66766" stop="66192"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273200" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66724" stop="66064"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543617" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66441" stop="66071"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553136" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66441" stop="66071"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553942" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66405" stop="66071"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217434" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATCTAAACAGTATGCTTATATTAGTCTTCCATGACAATATTAGGTCGAACAATCAAACAATTTTACTAATCTAACCACCGGTAGATGAAAACTGCCCCTTCAAGACTACCAATTATCAATTTCAGATCGATTATTTTGATAACCCCTTCCCCTCTCTCTCCTTGAGTGACCAAGGGAGGGAGAGAGAGAAAAAAAAAAGGTGATTTTTTTTGTGTATTCTTGAACTGAAAAATGCAATTGAAATCTGTCAACACATTTGCAATCACAATCATGTTGGGTTTTACACTTATCATTCTATTCTTCTCTGGATTTCTTGATTTCCCACTTCACACTTCTTCTTCAATCCCATCAACGAAAAATCAAATCTTGACCACCATCTCAGTTTCCGAGCCCGACCCTTTTAGTAACTTGTTGAGCACTTTTAAGAAATGGGATTCTCAAGTGGGTTGTGCTAAGTTTAGGGGGGAACATAAAGGGTTATTAGGAAATGGGTTGTTGTTGGATTCTTCTTCTGGTTCTTTGCAAAATGTTGATGATGGTGAGTTGAAGTGTAATGAGCTAAAGATGGATCATGTGAGTGTATTAGTTAAAGGGTGGACTTGGATTCCTGATAATTTGGATAATTTGTACTCTTGTCGGTGTGGGCTTAGCTGTTTGTGGACTAAATCTTCGGTTGTTGCTGATAAACCTGATGCTTTGTTGTTTGAGACAGCTACTCCTCCTGTTGAG : AGACGTCGAGGTGATCCATTACGTGTATACATGGATCTTGAAGCTGGTAGAAAGAAATCAGGGTATGAGGATATATTTATTGGCTATCATGCAGAAGACGATGTCCAGTCAACCTATGCGGGCGCACTTTTTCATAACAATCGGAATTATCACCTTTCTCCTTATAAGAACAAT : GATACTCTTGTTTACTGGTCTTCATCACGTTGTCTTCCTCAAAGGAACCAGCTTGCCAAACGTCTACTCAGCTTGCTACCCTCCCATTCATTTGGCAAGTGCCTGAACAATGTTGGAGGTCTAGACAAGGCACTCTCATTTTATCCTGAGTGTATCAAGGATTCTAATGAAGCACCCAAATGGTGGGATCATTTGCATTGCGCAATGTCACATTACAAGTTTGTCCTTGCGATTGAGAACACCAAGACAGAAAGTTATGTAACAGAGAAGTTATTTTACGCACTGGACTCTGGTGCAGTCCCCATTTATTTTGGTGCCCCGAATGTCTGGGACTTTGTACCTCCACATTCAATAATTGATGGAAGCAAGTTTAGCTCTTTGGAGGAATTGGCCTCGTACGTTAAGGCCATTGCTAATAATCCAGTAGCTTATGCAGAGTACCATGCTTGGAGAAGATGTGGCGTGCTGGGTAACTATAGAAAAACACGGGCAGCTAGTCTGGATACCTTGCCTTGCAGGTTATGTGAAGCCATCAGTAAAAGAAATGGAAGAAATGCAAAAGCCTCTTGACTATTCAACAGCAAAGCTACAGGGTACTAGGCTTTAAATTGTGTACTTAGATCAACTAGTGTTGTTTCTAAACAGTGCATGTCTTGTTAGGACTTAGGATATAGTGGCTTGTAGAGATCTCAAACCCTTACAAATTAATACTACATAAATTTTGGTCTAACAAAATTGAGC</gDNA_template>
            <first_frame> I  *  T  V  C  L  Y  *  S  S  M  T  I  L  G  R  T  I  K  Q  F  Y  *  S  N  H  R  *  M  K  T  A  P  S  R  L  P  I  I  N  F  R  S  I  I  L  I  T  P  S  P  L  S  P  *  V  T  K  G  G  R  E  R  K  K  K  G  D  F  F  C  V  F  L  N  *  K  M  Q  L  K  S  V  N  T  F  A  I  T  I  M  L  G  F  T  L  I  I  L  F  F  S  G  F  L  D  F  P  L  H  T  S  S  S  I  P  S  T  K  N  Q  I  L  T  T  I  S  V  S  E  P  D  P  F  S  N  L  L  S  T  F  K  K  W  D  S  Q  V  G  C  A  K  F  R  G  E  H  K  G  L  L  G  N  G  L  L  L  D  S  S  S  G  S  L  Q  N  V  D  D  G  E  L  K  C  N  E  L  K  M  D  H  V  S  V  L  V  K  G  W  T  W  I  P  D  N  L  D  N  L  Y  S  C  R  C  G  L  S  C  L  W  T  K  S  S  V  V  A  D  K  P  D  A  L  L  F  E  T  A  T  P  P  V  E  :  R  R  R  G  D  P  L  R  V  Y  M  D  L  E  A  G  R  K  K  S  G  Y  E  D  I  F  I  G  Y  H  A  E  D  D  V  Q  S  T  Y  A  G  A  L  F  H  N  N  R  N  Y  H  L  S  P  Y  K  N  N  :  D  T  L  V  Y  W  S  S  S  R  C  L  P  Q  R  N  Q  L  A  K  R  L  L  S  L  L  P  S  H  S  F  G  K  C  L  N  N  V  G  G  L  D  K  A  L  S  F  Y  P  E  C  I  K  D  S  N  E  A  P  K  W  W  D  H  L  H  C  A  M  S  H  Y  K  F  V  L  A  I  E  N  T  K  T  E  S  Y  V  T  E  K  L  F  Y  A  L  D  S  G  A  V  P  I  Y  F  G  A  P  N  V  W  D  F  V  P  P  H  S  I  I  D  G  S  K  F  S  S  L  E  E  L  A  S  Y  V  K  A  I  A  N  N  P  V  A  Y  A  E  Y  H  A  W  R  R  C  G  V  L  G  N  Y  R  K  T  R  A  A  S  L  D  T  L  P  C  R  L  C  E  A  I  S  K  R  N  G  R  N  A  K  A  S  *  L  F  N  S  K  A  T  G  Y  *  A  L  N  C  V  L  R  S  T  S  V  V  S  K  Q  C  M  S  C  *  D  L  G  Y  S  G  L  *  R  S  Q  T  L  T  N  *  Y  Y  I  N  F  G  L  T  K  L  S </first_frame>
            <second_frame>  S  K  Q  Y  A  Y  I  S  L  P  *  Q  Y  *  V  E  Q  S  N  N  F  T  N  L  T  T  G  R  *  K  L  P  L  Q  D  Y  Q  L  S  I  S  D  R  L  F  *  *  P  L  P  L  S  L  L  E  *  P  R  E  G  E  R  E  K  K  K  V  I  F  F  V  Y  S  *  T  E  K  C  N  *  N  L  S  T  H  L  Q  S  Q  S  C  W  V  L  H  L  S  F  Y  S  S  L  D  F  L  I  S  H  F  T  L  L  L  Q  S  H  Q  R  K  I  K  S  *  P  P  S  Q  F  P  S  P  T  L  L  V  T  C  *  A  L  L  R  N  G  I  L  K  W  V  V  L  S  L  G  G  N  I  K  G  Y  *  E  M  G  C  C  W  I  L  L  L  V  L  C  K  M  L  M  M  V  S  *  S  V  M  S  *  R  W  I  M  *  V  Y  *  L  K  G  G  L  G  F  L  I  I  W  I  I  C  T  L  V  G  V  G  L  A  V  C  G  L  N  L  R  L  L  L  I  N  L  M  L  C  C  L  R  Q  L  L  L  L  L  R :   D  V  E  V  I  H  Y  V  Y  T  W  I  L  K  L  V  E  R  N  Q  G  M  R  I  Y  L  L  A  I  M  Q  K  T  M  S  S  Q  P  M  R  A  H  F  F  I  T  I  G  I  I  T  F  L  L  I  R  T  M :   I  L  L  F  T  G  L  H  H  V  V  F  L  K  G  T  S  L  P  N  V  Y  S  A  C  Y  P  P  I  H  L  A  S  A  *  T  M  L  E  V  *  T  R  H  S  H  F  I  L  S  V  S  R  I  L  M  K  H  P  N  G  G  I  I  C  I  A  Q  C  H  I  T  S  L  S  L  R  L  R  T  P  R  Q  K  V  M  *  Q  R  S  Y  F  T  H  W  T  L  V  Q  S  P  F  I  L  V  P  R  M  S  G  T  L  Y  L  H  I  Q  *  L  M  E  A  S  L  A  L  W  R  N  W  P  R  T  L  R  P  L  L  I  I  Q  *  L  M  Q  S  T  M  L  G  E  D  V  A  C  W  V  T  I  E  K  H  G  Q  L  V  W  I  P  C  L  A  G  Y  V  K  P  S  V  K  E  M  E  E  M  Q  K  P  L  D  Y  S  T  A  K  L  Q  G  T  R  L  *  I  V  Y  L  D  Q  L  V  L  F  L  N  S  A  C  L  V  R  T  *  D  I  V  A  C  R  D  L  K  P  L  Q  I  N  T  T  *  I  L  V  *  Q  N  *   </second_frame>
            <third_frame>   L  N  S  M  L  I  L  V  F  H  D  N  I  R  S  N  N  Q  T  I  L  L  I  *  P  P  V  D  E  N  C  P  F  K  T  T  N  Y  Q  F  Q  I  D  Y  F  D  N  P  F  P  S  L  S  L  S  D  Q  G  R  E  R  E  K  K  K  R  *  F  F  L  C  I  L  E  L  K  N  A  I  E  I  C  Q  H  I  C  N  H  N  H  V  G  F  Y  T  Y  H  S  I  L  L  W  I  S  *  F  P  T  S  H  F  F  F  N  P  I  N  E  K  S  N  L  D  H  H  L  S  F  R  A  R  P  F  *  *  L  V  E  H  F  *  E  M  G  F  S  S  G  L  C  *  V  *  G  G  T  *  R  V  I  R  K  W  V  V  V  G  F  F  F  W  F  F  A  K  C  *  *  W  *  V  E  V  *  *  A  K  D  G  S  C  E  C  I  S  *  R  V  D  L  D  S  *  *  F  G  *  F  V  L  L  S  V  W  A  *  L  F  V  D  *  I  F  G  C  C  *  *  T  *  C  F  V  V  *  D  S  Y  S  S  C  *   : E  T  S  R  *  S  I  T  C  I  H  G  S  *  S  W  *  K  E  I  R  V  *  G  Y  I  Y  W  L  S  C  R  R  R  C  P  V  N  L  C  G  R  T  F  S  *  Q  S  E  L  S  P  F  S  L  *  E  Q   : *  Y  S  C  L  L  V  F  I  T  L  S  S  S  K  E  P  A  C  Q  T  S  T  Q  L  A  T  L  P  F  I  W  Q  V  P  E  Q  C  W  R  S  R  Q  G  T  L  I  L  S  *  V  Y  Q  G  F  *  *  S  T  Q  M  V  G  S  F  A  L  R  N  V  T  L  Q  V  C  P  C  D  *  E  H  Q  D  R  K  L  C  N  R  E  V  I  L  R  T  G  L  W  C  S  P  H  L  F  W  C  P  E  C  L  G  L  C  T  S  T  F  N  N  *  W  K  Q  V  *  L  F  G  G  I  G  L  V  R  *  G  H  C  *  *  S  S  S  L  C  R  V  P  C  L  E  K  M  W  R  A  G  *  L  *  K  N  T  G  S  *  S  G  Y  L  A  L  Q  V  M  *  S  H  Q  *  K  K  W  K  K  C  K  S  L  L  T  I  Q  Q  Q  S  Y  R  V  L  G  F  K  L  C  T  *  I  N  *  C  C  F  *  T  V  H  V  L  L  G  L  R  I  *  W  L  V  E  I  S  N  P  Y  K  L  I  L  H  K  F  W  S  N  K  I  E  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0132E21.2" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="69875" stop="69375"/>
                    <exon start="67103" stop="66930"/>
                    <exon start="66804" stop="66235"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1242</number_coding_nucleotides>
                  <number_encoded_amino_acids>414</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KMQLKSVNTFAITIMLGFTLIILFFSGFLDFPLHTSSSIPSTKNQILTTISVSEPDPFSNLLSTFKKWDSQVGCAKFRGEHKGLLGNGLLLDSSSGSLQNVDDGELKCNELKMDHVSVLVKGWTWIPDNLDNLYSCRCGLSCLWTKSSVVADKPDALLFETATPPVERRRGDPLRVYMDLEAGRKKSGYEDIFIGYHAEDDVQSTYAGALFHNNRNYHLSPYKNNDTLVYWSSSRCLPQRNQLAKRLLSLLPSHSFGKCLNNVGGLDKALSFYPECIKDSNEAPKWWDHLHCAMSHYKFVLAIENTKTESYVTEKLFYALDSGAVPIYFGAPNVWDFVPPHSIIDGSKFSSLEELASYVKAIANNPVAYAEYHAWRRCGVLGNYRKTRAASLDTLPCRLCEAISKRNGRNAKAS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="73988" PGL_stop="70395"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="73988" e_stop="73779"/>
            <exon e_start="73521" e_stop="73431"/>
            <exon e_start="72493" e_stop="72361"/>
            <exon e_start="71292" e_stop="71223"/>
            <exon e_start="71127" e_stop="71067"/>
            <exon e_start="70971" e_stop="70648"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.757" e_score="0.986"/>
          <exon-intron don_prob="0.989" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.765" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.968" acc_prob="0.947" e_score="1.000"/>
          <exon-intron don_prob="0.963" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.986">
            <gDNA_exon_boundary e_start="73988" e_stop="73779" e_length="210"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.757">
            <gDNA_intron_boundary i_start="73778" i_stop="73522" i_length="257"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="73521" e_stop="73431" e_length="91"/>
          </exon>
          <intron i_serial="2" don_prob="0.989" acc_prob="0.993">
            <gDNA_intron_boundary i_start="73430" i_stop="72494" i_length="937"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="72493" e_stop="72361" e_length="133"/>
          </exon>
          <intron i_serial="3" don_prob="0.765" acc_prob="0.979">
            <gDNA_intron_boundary i_start="72360" i_stop="71293" i_length="1068"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="71292" e_stop="71223" e_length="70"/>
          </exon>
          <intron i_serial="4" don_prob="0.968" acc_prob="0.947">
            <gDNA_intron_boundary i_start="71222" i_stop="71128" i_length="95"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="71127" e_stop="71067" e_length="61"/>
          </exon>
          <intron i_serial="5" don_prob="0.963" acc_prob="1.000">
            <gDNA_intron_boundary i_start="71066" i_stop="70972" i_length="95"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="70971" e_stop="70648" e_length="324"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73988" stop="73779"/>
              <exon start="73521" stop="73431"/>
              <exon start="72493" stop="72361"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341808" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73911" stop="73779"/>
              <exon start="73521" stop="73431"/>
              <exon start="72493" stop="72393"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290201" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73905" stop="73779"/>
              <exon start="73521" stop="73431"/>
              <exon start="72493" stop="72361"/>
              <exon start="71292" stop="71223"/>
              <exon start="71127" stop="71067"/>
              <exon start="70971" stop="70966"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308779" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73891" stop="73779"/>
              <exon start="73521" stop="73431"/>
              <exon start="72493" stop="72361"/>
              <exon start="71292" stop="71223"/>
              <exon start="71127" stop="71067"/>
              <exon start="70971" stop="70913"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549257" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73886" stop="73779"/>
              <exon start="73521" stop="73431"/>
              <exon start="72493" stop="72361"/>
              <exon start="71292" stop="71223"/>
              <exon start="71127" stop="71067"/>
              <exon start="70971" stop="70747"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378775" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73886" stop="73779"/>
              <exon start="73521" stop="73431"/>
              <exon start="72493" stop="72361"/>
              <exon start="71292" stop="71223"/>
              <exon start="71127" stop="71097"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292676" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73886" stop="73779"/>
              <exon start="73521" stop="73431"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290094" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73884" stop="73779"/>
              <exon start="73521" stop="73431"/>
              <exon start="72493" stop="72361"/>
              <exon start="71292" stop="71223"/>
              <exon start="71127" stop="71067"/>
              <exon start="70971" stop="70882"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324927" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73881" stop="73779"/>
              <exon start="73521" stop="73453"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325770" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73860" stop="73779"/>
              <exon start="73521" stop="73431"/>
              <exon start="72493" stop="72361"/>
              <exon start="71292" stop="71223"/>
              <exon start="71127" stop="71067"/>
              <exon start="70971" stop="70754"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373076" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73851" stop="73779"/>
              <exon start="73521" stop="73431"/>
              <exon start="72493" stop="72361"/>
              <exon start="71292" stop="71223"/>
              <exon start="71127" stop="71067"/>
              <exon start="70971" stop="70927"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295016" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72417" stop="72361"/>
              <exon start="71292" stop="71223"/>
              <exon start="71127" stop="71067"/>
              <exon start="70971" stop="70654"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E545744" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71125" stop="71067"/>
              <exon start="70971" stop="70648"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237022" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGCCGGGTGTATGCTATTTTGGGCCGTCATGCTCACAAAGGGGCATCGGTGGTCCATTAACTGGTTATCGCCCTTACAGATTACCAGAAGAGTTCCGTAGAGAGAGAAAGAGACGAAGAAGAGAGAGAAAGCATGACGACGATTCGTAGATTCAGCTGCAATGACTTGCTTCGCTTCGCGTCAGTGAATTTGGATCATCTTACTGAAACT : TTCAACATGTCATTTTATATGACTTACATGGCAAGATGGCCGGATTATTTCCATGTTGCAAAAGCTCCCGGCGGCCACATCATGGGATACA : TTATGGGAAAAGTTGAAGGGCAAGGTGAATCTTGGCATGGTCACGTTACTGCAGTAACTGTGGCTCCTGAATATCGGAGGCAGCAATTAGCCAAGAAATTGATGTACCTGCTGGAAGAAGTCAGTGATAAGAT : CGATAAGGCTTACTTTGTGGACTTGTTTGTGAGAGCATCAAACACACCAGCTATAAAGATGTACGAGAAG : CTTGATTACGTAGTATATAGGCGAGTTTTACGCTATTACTCAGGGGAGGAAGATGGTTTGG : ATATGAGAAAGGCACTATCGCGAGATGTAGAAAAGAAGTCTATCATCCCTCTTAAACGACCGGTAACTCCAGATGAATTGGAGTATGACTGAGTCGGTAAGAGTTGTTACCCCATGTAATCTTATCTTTCAAGAAGCTAAGTTTAGGGTATCGACAAGTCTTGTCTAGAAATGTATGAGATGAAGAGTCTGGGTTCTTATCTATAGTACTGTTGTGCCATTATGTTTAAGAACCAAGTGCTAGAATTTCTGGCCTTGTGTATTTGCTTGCATGCCATATGTTCTTTTAATATTTTAAATTGTTAAATTTTTGTGACTTATTGAA</gDNA_template>
            <first_frame> G  R  V  Y  A  I  L  G  R  H  A  H  K  G  A  S  V  V  H  *  L  V  I  A  L  T  D  Y  Q  K  S  S  V  E  R  E  R  D  E  E  E  R  E  S  M  T  T  I  R  R  F  S  C  N  D  L  L  R  F  A  S  V  N  L  D  H  L  T  E  T  :  F  N  M  S  F  Y  M  T  Y  M  A  R  W  P  D  Y  F  H  V  A  K  A  P  G  G  H  I  M  G  Y   : I  M  G  K  V  E  G  Q  G  E  S  W  H  G  H  V  T  A  V  T  V  A  P  E  Y  R  R  Q  Q  L  A  K  K  L  M  Y  L  L  E  E  V  S  D  K  I :   D  K  A  Y  F  V  D  L  F  V  R  A  S  N  T  P  A  I  K  M  Y  E  K  :  L  D  Y  V  V  Y  R  R  V  L  R  Y  Y  S  G  E  E  D  G  L   : D  M  R  K  A  L  S  R  D  V  E  K  K  S  I  I  P  L  K  R  P  V  T  P  D  E  L  E  Y  D  *  V  G  K  S  C  Y  P  M  *  S  Y  L  S  R  S  *  V  *  G  I  D  K  S  C  L  E  M  Y  E  M  K  S  L  G  S  Y  L  *  Y  C  C  A  I  M  F  K  N  Q  V  L  E  F  L  A  L  C  I  C  L  H  A  I  C  S  F  N  I  L  N  C  *  I  F  V  T  Y  *  </first_frame>
            <second_frame>  A  G  C  M  L  F  W  A  V  M  L  T  K  G  H  R  W  S  I  N  W  L  S  P  L  Q  I  T  R  R  V  P  *  R  E  K  E  T  K  K  R  E  K  A  *  R  R  F  V  D  S  A  A  M  T  C  F  A  S  R  Q  *  I  W  I  I  L  L  K  L :   S  T  C  H  F  I  *  L  T  W  Q  D  G  R  I  I  S  M  L  Q  K  L  P  A  A  T  S  W  D  T  :  L  W  E  K  L  K  G  K  V  N  L  G  M  V  T  L  L  Q  *  L  W  L  L  N  I  G  G  S  N  *  P  R  N  *  C  T  C  W  K  K  S  V  I  R   : S  I  R  L  T  L  W  T  C  L  *  E  H  Q  T  H  Q  L  *  R  C  T  R  S :   L  I  T  *  Y  I  G  E  F  Y  A  I  T  Q  G  R  K  M  V  W  :  I  *  E  R  H  Y  R  E  M  *  K  R  S  L  S  S  L  L  N  D  R  *  L  Q  M  N  W  S  M  T  E  S  V  R  V  V  T  P  C  N  L  I  F  Q  E  A  K  F  R  V  S  T  S  L  V  *  K  C  M  R  *  R  V  W  V  L  I  Y  S  T  V  V  P  L  C  L  R  T  K  C  *  N  F  W  P  C  V  F  A  C  M  P  Y  V  L  L  I  F  *  I  V  K  F  L  *  L  I  E </second_frame>
            <third_frame>   P  G  V  C  Y  F  G  P  S  C  S  Q  R  G  I  G  G  P  L  T  G  Y  R  P  Y  R  L  P  E  E  F  R  R  E  R  K  R  R  R  R  E  R  K  H  D  D  D  S  *  I  Q  L  Q  *  L  A  S  L  R  V  S  E  F  G  S  S  Y  *  N   : F  Q  H  V  I  L  Y  D  L  H  G  K  M  A  G  L  F  P  C  C  K  S  S  R  R  P  H  H  G  I  H :   Y  G  K  S  *  R  A  R  *  I  L  A  W  S  R  Y  C  S  N  C  G  S  *  I  S  E  A  A  I  S  Q  E  I  D  V  P  A  G  R  S  Q  *  *  D  :  R  *  G  L  L  C  G  L  V  C  E  S  I  K  H  T  S  Y  K  D  V  R  E   : A  *  L  R  S  I  *  A  S  F  T  L  L  L  R  G  G  R  W  F  G :   Y  E  K  G  T  I  A  R  C  R  K  E  V  Y  H  P  S  *  T  T  G  N  S  R  *  I  G  V  *  L  S  R  *  E  L  L  P  H  V  I  L  S  F  K  K  L  S  L  G  Y  R  Q  V  L  S  R  N  V  *  D  E  E  S  G  F  L  S  I  V  L  L  C  H  Y  V  *  E  P  S  A  R  I  S  G  L  V  Y  L  L  A  C  H  M  F  F  *  Y  F  K  L  L  N  F  C  D  L  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0132E21.2" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="73928" stop="73779"/>
                    <exon start="73521" stop="73431"/>
                    <exon start="72493" stop="72361"/>
                    <exon start="71292" stop="71223"/>
                    <exon start="71127" stop="71067"/>
                    <exon start="70971" stop="70880"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>594</number_coding_nucleotides>
                  <number_encoded_amino_acids>198</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LVIALTDYQKSSVERERDEEERESMTTIRRFSCNDLLRFASVNLDHLTETFNMSFYMTYMARWPDYFHVAKAPGGHIMGYIMGKVEGQGESWHGHVTAVTVAPEYRRQQLAKKLMYLLEEVSDKIDKAYFVDLFVRASNTPAIKMYEKLDYVVYRRVLRYYSGEEDGLDMRKALSRDVEKKSIIPLKRPVTPDELEYD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="73988" e_stop="73779"/>
            <exon e_start="73521" e_stop="73431"/>
            <exon e_start="72493" e_stop="72361"/>
            <exon e_start="71292" e_stop="71223"/>
            <exon e_start="71127" e_stop="71067"/>
            <exon e_start="70971" e_stop="70749"/>
            <exon e_start="70421" e_stop="70395"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.757" e_score="0.986"/>
          <exon-intron don_prob="0.989" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.765" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.968" acc_prob="0.947" e_score="1.000"/>
          <exon-intron don_prob="0.963" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.996"/>
          <exon-only e_score="0.667"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.986">
            <gDNA_exon_boundary e_start="73988" e_stop="73779" e_length="210"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.757">
            <gDNA_intron_boundary i_start="73778" i_stop="73522" i_length="257"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="73521" e_stop="73431" e_length="91"/>
          </exon>
          <intron i_serial="2" don_prob="0.989" acc_prob="0.993">
            <gDNA_intron_boundary i_start="73430" i_stop="72494" i_length="937"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="72493" e_stop="72361" e_length="133"/>
          </exon>
          <intron i_serial="3" don_prob="0.765" acc_prob="0.979">
            <gDNA_intron_boundary i_start="72360" i_stop="71293" i_length="1068"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="71292" e_stop="71223" e_length="70"/>
          </exon>
          <intron i_serial="4" don_prob="0.968" acc_prob="0.947">
            <gDNA_intron_boundary i_start="71222" i_stop="71128" i_length="95"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="71127" e_stop="71067" e_length="61"/>
          </exon>
          <intron i_serial="5" don_prob="0.963" acc_prob="1.000">
            <gDNA_intron_boundary i_start="71066" i_stop="70972" i_length="95"/>
          </intron>
          <exon e_serial="6" e_score="0.996">
            <gDNA_exon_boundary e_start="70971" e_stop="70749" e_length="223"/>
          </exon>
          <intron i_serial="6" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="70748" i_stop="70422" i_length="327"/>
          </intron>
          <exon e_serial="7" e_score="0.667">
            <gDNA_exon_boundary e_start="70421" e_stop="70395" e_length="27"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73988" stop="73779"/>
              <exon start="73521" stop="73431"/>
              <exon start="72493" stop="72361"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341808" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73911" stop="73779"/>
              <exon start="73521" stop="73431"/>
              <exon start="72493" stop="72393"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290201" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73905" stop="73779"/>
              <exon start="73521" stop="73431"/>
              <exon start="72493" stop="72361"/>
              <exon start="71292" stop="71223"/>
              <exon start="71127" stop="71067"/>
              <exon start="70971" stop="70966"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308779" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73891" stop="73779"/>
              <exon start="73521" stop="73431"/>
              <exon start="72493" stop="72361"/>
              <exon start="71292" stop="71223"/>
              <exon start="71127" stop="71067"/>
              <exon start="70971" stop="70913"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549257" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73886" stop="73779"/>
              <exon start="73521" stop="73431"/>
              <exon start="72493" stop="72361"/>
              <exon start="71292" stop="71223"/>
              <exon start="71127" stop="71067"/>
              <exon start="70971" stop="70749"/>
              <exon start="70421" stop="70395"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373077" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73886" stop="73779"/>
              <exon start="73521" stop="73431"/>
              <exon start="72493" stop="72361"/>
              <exon start="71292" stop="71223"/>
              <exon start="71127" stop="71097"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292676" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73886" stop="73779"/>
              <exon start="73521" stop="73431"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290094" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73884" stop="73779"/>
              <exon start="73521" stop="73431"/>
              <exon start="72493" stop="72361"/>
              <exon start="71292" stop="71223"/>
              <exon start="71127" stop="71067"/>
              <exon start="70971" stop="70882"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324927" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73881" stop="73779"/>
              <exon start="73521" stop="73453"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325770" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73860" stop="73779"/>
              <exon start="73521" stop="73431"/>
              <exon start="72493" stop="72361"/>
              <exon start="71292" stop="71223"/>
              <exon start="71127" stop="71067"/>
              <exon start="70971" stop="70754"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373076" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73851" stop="73779"/>
              <exon start="73521" stop="73431"/>
              <exon start="72493" stop="72361"/>
              <exon start="71292" stop="71223"/>
              <exon start="71127" stop="71067"/>
              <exon start="70971" stop="70927"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295016" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGCCGGGTGTATGCTATTTTGGGCCGTCATGCTCACAAAGGGGCATCGGTGGTCCATTAACTGGTTATCGCCCTTACAGATTACCAGAAGAGTTCCGTAGAGAGAGAAAGAGACGAAGAAGAGAGAGAAAGCATGACGACGATTCGTAGATTCAGCTGCAATGACTTGCTTCGCTTCGCGTCAGTGAATTTGGATCATCTTACTGAAACT : TTCAACATGTCATTTTATATGACTTACATGGCAAGATGGCCGGATTATTTCCATGTTGCAAAAGCTCCCGGCGGCCACATCATGGGATACA : TTATGGGAAAAGTTGAAGGGCAAGGTGAATCTTGGCATGGTCACGTTACTGCAGTAACTGTGGCTCCTGAATATCGGAGGCAGCAATTAGCCAAGAAATTGATGTACCTGCTGGAAGAAGTCAGTGATAAGAT : CGATAAGGCTTACTTTGTGGACTTGTTTGTGAGAGCATCAAACACACCAGCTATAAAGATGTACGAGAAG : CTTGATTACGTAGTATATAGGCGAGTTTTACGCTATTACTCAGGGGAGGAAGATGGTTTGG : ATATGAGAAAGGCACTATCGCGAGATGTAGAAAAGAAGTCTATCATCCCTCTTAAACGACCGGTAACTCCAGATGAATTGGAGTATGACTGAGTCGGTAAGAGTTGTTACCCCATGTAATCTTATCTTTCAAGAAGCTAAGTTTAGGGTATCGACAAGTCTTGTCTAGAAATGTATGAGATGAAGAGTCTGGGTTCTTATCTATAGTACTGTTGTGCCATTAT : GACAACAACATAAAAATATACAAAAAT</gDNA_template>
            <first_frame> G  R  V  Y  A  I  L  G  R  H  A  H  K  G  A  S  V  V  H  *  L  V  I  A  L  T  D  Y  Q  K  S  S  V  E  R  E  R  D  E  E  E  R  E  S  M  T  T  I  R  R  F  S  C  N  D  L  L  R  F  A  S  V  N  L  D  H  L  T  E  T  :  F  N  M  S  F  Y  M  T  Y  M  A  R  W  P  D  Y  F  H  V  A  K  A  P  G  G  H  I  M  G  Y   : I  M  G  K  V  E  G  Q  G  E  S  W  H  G  H  V  T  A  V  T  V  A  P  E  Y  R  R  Q  Q  L  A  K  K  L  M  Y  L  L  E  E  V  S  D  K  I :   D  K  A  Y  F  V  D  L  F  V  R  A  S  N  T  P  A  I  K  M  Y  E  K  :  L  D  Y  V  V  Y  R  R  V  L  R  Y  Y  S  G  E  E  D  G  L   : D  M  R  K  A  L  S  R  D  V  E  K  K  S  I  I  P  L  K  R  P  V  T  P  D  E  L  E  Y  D  *  V  G  K  S  C  Y  P  M  *  S  Y  L  S  R  S  *  V  *  G  I  D  K  S  C  L  E  M  Y  E  M  K  S  L  G  S  Y  L  *  Y  C  C  A  I  M :   T  T  T  *  K  Y  T  K   </first_frame>
            <second_frame>  A  G  C  M  L  F  W  A  V  M  L  T  K  G  H  R  W  S  I  N  W  L  S  P  L  Q  I  T  R  R  V  P  *  R  E  K  E  T  K  K  R  E  K  A  *  R  R  F  V  D  S  A  A  M  T  C  F  A  S  R  Q  *  I  W  I  I  L  L  K  L :   S  T  C  H  F  I  *  L  T  W  Q  D  G  R  I  I  S  M  L  Q  K  L  P  A  A  T  S  W  D  T  :  L  W  E  K  L  K  G  K  V  N  L  G  M  V  T  L  L  Q  *  L  W  L  L  N  I  G  G  S  N  *  P  R  N  *  C  T  C  W  K  K  S  V  I  R   : S  I  R  L  T  L  W  T  C  L  *  E  H  Q  T  H  Q  L  *  R  C  T  R  S :   L  I  T  *  Y  I  G  E  F  Y  A  I  T  Q  G  R  K  M  V  W  :  I  *  E  R  H  Y  R  E  M  *  K  R  S  L  S  S  L  L  N  D  R  *  L  Q  M  N  W  S  M  T  E  S  V  R  V  V  T  P  C  N  L  I  F  Q  E  A  K  F  R  V  S  T  S  L  V  *  K  C  M  R  *  R  V  W  V  L  I  Y  S  T  V  V  P  L   : *  Q  Q  H  K  N  I  Q  K  </second_frame>
            <third_frame>   P  G  V  C  Y  F  G  P  S  C  S  Q  R  G  I  G  G  P  L  T  G  Y  R  P  Y  R  L  P  E  E  F  R  R  E  R  K  R  R  R  R  E  R  K  H  D  D  D  S  *  I  Q  L  Q  *  L  A  S  L  R  V  S  E  F  G  S  S  Y  *  N   : F  Q  H  V  I  L  Y  D  L  H  G  K  M  A  G  L  F  P  C  C  K  S  S  R  R  P  H  H  G  I  H :   Y  G  K  S  *  R  A  R  *  I  L  A  W  S  R  Y  C  S  N  C  G  S  *  I  S  E  A  A  I  S  Q  E  I  D  V  P  A  G  R  S  Q  *  *  D  :  R  *  G  L  L  C  G  L  V  C  E  S  I  K  H  T  S  Y  K  D  V  R  E   : A  *  L  R  S  I  *  A  S  F  T  L  L  L  R  G  G  R  W  F  G :   Y  E  K  G  T  I  A  R  C  R  K  E  V  Y  H  P  S  *  T  T  G  N  S  R  *  I  G  V  *  L  S  R  *  E  L  L  P  H  V  I  L  S  F  K  K  L  S  L  G  Y  R  Q  V  L  S  R  N  V  *  D  E  E  S  G  F  L  S  I  V  L  L  C  H  Y  :  D  N  N  I  K  I  Y  K  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0132E21.2" strand="-"/>
                <serials PGL_serial="10" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="73928" stop="73779"/>
                    <exon start="73521" stop="73431"/>
                    <exon start="72493" stop="72361"/>
                    <exon start="71292" stop="71223"/>
                    <exon start="71127" stop="71067"/>
                    <exon start="70971" stop="70880"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>594</number_coding_nucleotides>
                  <number_encoded_amino_acids>198</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LVIALTDYQKSSVERERDEEERESMTTIRRFSCNDLLRFASVNLDHLTETFNMSFYMTYMARWPDYFHVAKAPGGHIMGYIMGKVEGQGESWHGHVTAVTVAPEYRRQQLAKKLMYLLEEVSDKIDKAYFVDLFVRASNTPAIKMYEKLDYVVYRRVLRYYSGEEDGLDMRKALSRDVEKKSIIPLKRPVTPDELEYD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="71128" e_stop="71067"/>
            <exon e_start="70971" e_stop="70648"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.963" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="71128" e_stop="71067" e_length="62"/>
          </exon>
          <intron i_serial="1" don_prob="0.963" acc_prob="1.000">
            <gDNA_intron_boundary i_start="71066" i_stop="70972" i_length="95"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="70971" e_stop="70648" e_length="324"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71128" stop="71067"/>
              <exon start="70971" stop="70648"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236845" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71125" stop="71067"/>
              <exon start="70971" stop="70648"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237022" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCTTGATTACGTAGTATATAGGCGAGTTTTACGCTATTACTCAGGGGAGGAAGATGGTTTGG : ATATGAGAAAGGCACTATCGCGAGATGTAGAAAAGAAGTCTATCATCCCTCTTAAACGACCGGTAACTCCAGATGAATTGGAGTATGACTGAGTCGGTAAGAGTTGTTACCCCATGTAATCTTATCTTTCAAGAAGCTAAGTTTAGGGTATCGACAAGTCTTGTCTAGAAATGTATGAGATGAAGAGTCTGGGTTCTTATCTATAGTACTGTTGTGCCATTATGTTTAAGAACCAAGTGCTAGAATTTCTGGCCTTGTGTATTTGCTTGCATGCCATATGTTCTTTTAATATTTTAAATTGTTAAATTTTTGTGACTTATTGAA</gDNA_template>
            <first_frame> A  *  L  R  S  I  *  A  S  F  T  L  L  L  R  G  G  R  W  F  G :   Y  E  K  G  T  I  A  R  C  R  K  E  V  Y  H  P  S  *  T  T  G  N  S  R  *  I  G  V  *  L  S  R  *  E  L  L  P  H  V  I  L  S  F  K  K  L  S  L  G  Y  R  Q  V  L  S  R  N  V  *  D  E  E  S  G  F  L  S  I  V  L  L  C  H  Y  V  *  E  P  S  A  R  I  S  G  L  V  Y  L  L  A  C  H  M  F  F  *  Y  F  K  L  L  N  F  C  D  L  L   </first_frame>
            <second_frame>  L  D  Y  V  V  Y  R  R  V  L  R  Y  Y  S  G  E  E  D  G  L   : D  M  R  K  A  L  S  R  D  V  E  K  K  S  I  I  P  L  K  R  P  V  T  P  D  E  L  E  Y  D  *  V  G  K  S  C  Y  P  M  *  S  Y  L  S  R  S  *  V  *  G  I  D  K  S  C  L  E  M  Y  E  M  K  S  L  G  S  Y  L  *  Y  C  C  A  I  M  F  K  N  Q  V  L  E  F  L  A  L  C  I  C  L  H  A  I  C  S  F  N  I  L  N  C  *  I  F  V  T  Y  *  </second_frame>
            <third_frame>   L  I  T  *  Y  I  G  E  F  Y  A  I  T  Q  G  R  K  M  V  W  :  I  *  E  R  H  Y  R  E  M  *  K  R  S  L  S  S  L  L  N  D  R  *  L  Q  M  N  W  S  M  T  E  S  V  R  V  V  T  P  C  N  L  I  F  Q  E  A  K  F  R  V  S  T  S  L  V  *  K  C  M  R  *  R  V  W  V  L  I  Y  S  T  V  V  P  L  C  L  R  T  K  C  *  N  F  W  P  C  V  F  A  C  M  P  Y  V  L  L  I  F  *  I  V  K  F  L  *  L  I  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06SLm0132E21.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="86089" PGL_stop="88424"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="86089" e_stop="86163"/>
            <exon e_start="87666" e_stop="88067"/>
            <exon e_start="88350" e_stop="88424"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.979" e_score="0.987"/>
          <exon-intron don_prob="1.000" acc_prob="0.995" e_score="0.998"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.987">
            <gDNA_exon_boundary e_start="86089" e_stop="86163" e_length="75"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.979">
            <gDNA_intron_boundary i_start="86164" i_stop="87665" i_length="1502"/>
          </intron>
          <exon e_serial="2" e_score="0.998">
            <gDNA_exon_boundary e_start="87666" e_stop="88067" e_length="402"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.995">
            <gDNA_intron_boundary i_start="88068" i_stop="88349" i_length="282"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="88350" e_stop="88424" e_length="75"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86089" stop="86163"/>
              <exon start="87666" stop="88067"/>
              <exon start="88350" stop="88424"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295202" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86101" stop="86163"/>
              <exon start="87666" stop="88067"/>
              <exon start="88350" stop="88412"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329919" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCGATCTCGCCGGCGCTCCGGCCATCATCATCGTCGGAAAATCTTCCATTCTTCTCATTTCTCTCTCTATCTAAG : AGTACTCAGGAGGATTGAAGGTTTAAGGTGACCATGGAAGAAACTGGACTGAGAAATGTGGGCTCCAACTGCTCCATTTCTGAAATAGATGATTATGATCTCTCTAAGCTTCTAAACAAGCCAAGGCTAAACATAGAGAGGAAGAGATCTTTTGATGAGAGGTCACTCAGTGAGTTGTCCATTGGCCTATCTAGAGGTTTAGATCATTATGAAAGTGCCTCACCTGGCCAATCAGTCTTGGACACCCCAGTTTCATCAGCCCGGAACTCTTTTGAGCCCCATCCGATGGTTGCTGAAGCATGGGATGCTCTACGCCGCACTATGGTTCATTTTCGTGGTCAACCAGTCGGTACAATAGCGGCAATTGACCATGCCTCTGAAGAAGTCCTCAACTATGATCAG : GTTTTTGTTCGAGATTTTGTGCCTAGTGCTTTGGCCTTCCTGATGAATGGAGAGCCAGATATAGTCAAGAACTTC</gDNA_template>
            <first_frame> A  I  S  P  A  L  R  P  S  S  S  S  E  N  L  P  F  F  S  F  L  S  L  S  K  :  S  T  Q  E  D  *  R  F  K  V  T  M  E  E  T  G  L  R  N  V  G  S  N  C  S  I  S  E  I  D  D  Y  D  L  S  K  L  L  N  K  P  R  L  N  I  E  R  K  R  S  F  D  E  R  S  L  S  E  L  S  I  G  L  S  R  G  L  D  H  Y  E  S  A  S  P  G  Q  S  V  L  D  T  P  V  S  S  A  R  N  S  F  E  P  H  P  M  V  A  E  A  W  D  A  L  R  R  T  M  V  H  F  R  G  Q  P  V  G  T  I  A  A  I  D  H  A  S  E  E  V  L  N  Y  D  Q  :  V  F  V  R  D  F  V  P  S  A  L  A  F  L  M  N  G  E  P  D  I  V  K  N  F </first_frame>
            <second_frame>  R  S  R  R  R  S  G  H  H  H  R  R  K  I  F  H  S  S  H  F  S  L  Y  L  R :   V  L  R  R  I  E  G  L  R  *  P  W  K  K  L  D  *  E  M  W  A  P  T  A  P  F  L  K  *  M  I  M  I  S  L  S  F  *  T  S  Q  G  *  T  *  R  G  R  D  L  L  M  R  G  H  S  V  S  C  P  L  A  Y  L  E  V  *  I  I  M  K  V  P  H  L  A  N  Q  S  W  T  P  Q  F  H  Q  P  G  T  L  L  S  P  I  R  W  L  L  K  H  G  M  L  Y  A  A  L  W  F  I  F  V  V  N  Q  S  V  Q  *  R  Q  L  T  M  P  L  K  K  S  S  T  M  I  R :   F  L  F  E  I  L  C  L  V  L  W  P  S  *  *  M  E  S  Q  I  *  S  R  T   </second_frame>
            <third_frame>   D  L  A  G  A  P  A  I  I  I  V  G  K  S  S  I  L  L  I  S  L  S  I  *   : E  Y  S  G  G  L  K  V  *  G  D  H  G  R  N  W  T  E  K  C  G  L  Q  L  L  H  F  *  N  R  *  L  *  S  L  *  A  S  K  Q  A  K  A  K  H  R  E  E  E  I  F  *  *  E  V  T  Q  *  V  V  H  W  P  I  *  R  F  R  S  L  *  K  C  L  T  W  P  I  S  L  G  H  P  S  F  I  S  P  E  L  F  *  A  P  S  D  G  C  *  S  M  G  C  S  T  P  H  Y  G  S  F  S  W  S  T  S  R  Y  N  S  G  N  *  P  C  L  *  R  S  P  Q  L  *  S   : G  F  C  S  R  F  C  A  *  C  F  G  L  P  D  E  W  R  A  R  Y  S  Q  E  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0132E21.2" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="87684" stop="88067"/>
                    <exon start="88350" stop="88424"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>459</number_coding_nucleotides>
                  <number_encoded_amino_acids>153</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RFKVTMEETGLRNVGSNCSISEIDDYDLSKLLNKPRLNIERKRSFDERSLSELSIGLSRGLDHYESASPGQSVLDTPVSSARNSFEPHPMVAEAWDALRRTMVHFRGQPVGTIAAIDHASEEVLNYDQVFVRDFVPSALAFLMNGEPDIVKNF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="88728" PGL_stop="91471"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="88728" e_stop="88781"/>
            <exon e_start="90406" e_stop="90964"/>
            <exon e_start="91188" e_stop="91471"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.977" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.843" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="88728" e_stop="88781" e_length="54"/>
          </exon>
          <intron i_serial="1" don_prob="0.977" acc_prob="0.999">
            <gDNA_intron_boundary i_start="88782" i_stop="90405" i_length="1624"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="90406" e_stop="90964" e_length="559"/>
          </exon>
          <intron i_serial="2" don_prob="0.991" acc_prob="0.843">
            <gDNA_intron_boundary i_start="90965" i_stop="91187" i_length="223"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="91188" e_stop="91471" e_length="284"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88728" stop="88781"/>
              <exon start="90406" stop="90964"/>
              <exon start="91188" stop="91331"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263372" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88728" stop="88781"/>
              <exon start="90406" stop="90920"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254129" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90565" stop="90964"/>
              <exon start="91188" stop="91302"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725594" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90637" stop="90964"/>
              <exon start="91188" stop="91471"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345920" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACATTTCCAACTCTGCTATGTGCTGATGGATGCTCAATGATTGATAGGAGGATG : GGTGTTTATGGATATCCTATTGAGATCCAAGCTCTCTTCTTCATGGCACTGAGATCTGCATTGGCCATGTTGAAGCACGATACAGAAGGGAAAGAATTCATTGAGAGAATAGTGAAGCGCCTGCATGCCTTGAGTTATCATATGCGAAGTTATTTTTGGCTCGACTTTCAACAGTTAAATGACATATATCGCTATAAAACTGAAGAGTATTCTCACACAGCAGTAAATAAGTTTAATGTTATTCCTGATTCAATCCCAGAGTGGGTATTTGATTTTGTGCCTACACGTGGAGGTTACTTTATTGGAAACGTTAGTCCTGCAAGGATGGACTTCAGGTGGTTTGCTTTGGGTAACTGTATTGCAATCTTGTCTTCCCTTGCCACTCCAGAACAAGCTTCTGCTATTATGGATCTCATAGAATCCCGCTGGGAGGAGCTAGTAGCAGATATGCCTTTGAAGATATGCTATCCAGCAATTGAAAATCACGAATGGCGGATAGTAACTGGTTGTGATCCCAAGAATATTAGATGGAGTTACCATAATGGAGGATCTTGGCCAG : TGCTTTTGTGGTTGCTAACGGCTGCCTGCATTAAGACTGGACGGCCACAAATTGCAAGACGAGCAATTGATCTTGCTGAGAGCCGCTTACTCAAGGACAGCTGGCCTGAATATTATGATGGAAAGCTCGGCAGATACATTGGTAAACAAGCAAGGAAGCACCAGACATGGTCAATTGCTGGATATCTTGTAGCAAAGATGTTGCTGGAGGATCCTTCACACTTGGGAATGATCTCTTTGGAGGAGGACAAGCAAATGAAGCCTGTAATCAAGCGATCATCTTCA</gDNA_template>
            <first_frame> T  F  P  T  L  L  C  A  D  G  C  S  M  I  D  R  R  M  :  G  V  Y  G  Y  P  I  E  I  Q  A  L  F  F  M  A  L  R  S  A  L  A  M  L  K  H  D  T  E  G  K  E  F  I  E  R  I  V  K  R  L  H  A  L  S  Y  H  M  R  S  Y  F  W  L  D  F  Q  Q  L  N  D  I  Y  R  Y  K  T  E  E  Y  S  H  T  A  V  N  K  F  N  V  I  P  D  S  I  P  E  W  V  F  D  F  V  P  T  R  G  G  Y  F  I  G  N  V  S  P  A  R  M  D  F  R  W  F  A  L  G  N  C  I  A  I  L  S  S  L  A  T  P  E  Q  A  S  A  I  M  D  L  I  E  S  R  W  E  E  L  V  A  D  M  P  L  K  I  C  Y  P  A  I  E  N  H  E  W  R  I  V  T  G  C  D  P  K  N  I  R  W  S  Y  H  N  G  G  S  W  P   : V  L  L  W  L  L  T  A  A  C  I  K  T  G  R  P  Q  I  A  R  R  A  I  D  L  A  E  S  R  L  L  K  D  S  W  P  E  Y  Y  D  G  K  L  G  R  Y  I  G  K  Q  A  R  K  H  Q  T  W  S  I  A  G  Y  L  V  A  K  M  L  L  E  D  P  S  H  L  G  M  I  S  L  E  E  D  K  Q  M  K  P  V  I  K  R  S  S  S </first_frame>
            <second_frame>  H  F  Q  L  C  Y  V  L  M  D  A  Q  *  L  I  G  G  W :   V  F  M  D  I  L  L  R  S  K  L  S  S  S  W  H  *  D  L  H  W  P  C  *  S  T  I  Q  K  G  K  N  S  L  R  E  *  *  S  A  C  M  P  *  V  I  I  C  E  V  I  F  G  S  T  F  N  S  *  M  T  Y  I  A  I  K  L  K  S  I  L  T  Q  Q  *  I  S  L  M  L  F  L  I  Q  S  Q  S  G  Y  L  I  L  C  L  H  V  E  V  T  L  L  E  T  L  V  L  Q  G  W  T  S  G  G  L  L  W  V  T  V  L  Q  S  C  L  P  L  P  L  Q  N  K  L  L  L  L  W  I  S  *  N  P  A  G  R  S  *  *  Q  I  C  L  *  R  Y  A  I  Q  Q  L  K  I  T  N  G  G  *  *  L  V  V  I  P  R  I  L  D  G  V  T  I  M  E  D  L  G  Q  :  C  F  C  G  C  *  R  L  P  A  L  R  L  D  G  H  K  L  Q  D  E  Q  L  I  L  L  R  A  A  Y  S  R  T  A  G  L  N  I  M  M  E  S  S  A  D  T  L  V  N  K  Q  G  S  T  R  H  G  Q  L  L  D  I  L  *  Q  R  C  C  W  R  I  L  H  T  W  E  *  S  L  W  R  R  T  S  K  *  S  L  *  S  S  D  H  L   </second_frame>
            <third_frame>   I  S  N  S  A  M  C  *  W  M  L  N  D  *  *  E  D   : G  C  L  W  I  S  Y  *  D  P  S  S  L  L  H  G  T  E  I  C  I  G  H  V  E  A  R  Y  R  R  E  R  I  H  *  E  N  S  E  A  P  A  C  L  E  L  S  Y  A  K  L  F  L  A  R  L  S  T  V  K  *  H  I  S  L  *  N  *  R  V  F  S  H  S  S  K  *  V  *  C  Y  S  *  F  N  P  R  V  G  I  *  F  C  A  Y  T  W  R  L  L  Y  W  K  R  *  S  C  K  D  G  L  Q  V  V  C  F  G  *  L  Y  C  N  L  V  F  P  C  H  S  R  T  S  F  C  Y  Y  G  S  H  R  I  P  L  G  G  A  S  S  R  Y  A  F  E  D  M  L  S  S  N  *  K  S  R  M  A  D  S  N  W  L  *  S  Q  E  Y  *  M  E  L  P  *  W  R  I  L  A  S :   A  F  V  V  A  N  G  C  L  H  *  D  W  T  A  T  N  C  K  T  S  N  *  S  C  *  E  P  L  T  Q  G  Q  L  A  *  I  L  *  W  K  A  R  Q  I  H  W  *  T  S  K  E  A  P  D  M  V  N  C  W  I  S  C  S  K  D  V  A  G  G  S  F  T  L  G  N  D  L  F  G  G  G  Q  A  N  E  A  C  N  Q  A  I  I  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0132E21.2" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="88728" stop="88781"/>
                    <exon start="90406" stop="90964"/>
                    <exon start="91188" stop="91471"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>897</number_coding_nucleotides>
                  <number_encoded_amino_acids>299</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TFPTLLCADGCSMIDRRMGVYGYPIEIQALFFMALRSALAMLKHDTEGKEFIERIVKRLHALSYHMRSYFWLDFQQLNDIYRYKTEEYSHTAVNKFNVIPDSIPEWVFDFVPTRGGYFIGNVSPARMDFRWFALGNCIAILSSLATPEQASAIMDLIESRWEELVADMPLKICYPAIENHEWRIVTGCDPKNIRWSYHNGGSWPVLLWLLTAACIKTGRPQIARRAIDLAESRLLKDSWPEYYDGKLGRYIGKQARKHQTWSIAGYLVAKMLLEDPSHLGMISLEEDKQMKPVIKRSSS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="103034" PGL_stop="104198"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="103034" e_stop="104198"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="103034" e_stop="104198" e_length="1165"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103034" stop="103601"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324196" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103073" stop="103716"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303529" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103556" stop="104198"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268578" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103556" stop="104172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371256" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTCTGTTTTGGCTCATTTTGCACTACTACTTGCTTTCATTTGAGCCTTTTTTCTTTTCCTAAAAACTTCCAATTGGTTAAAGTTTTCAAATATCAAACAAATCTTTGTTTGTTGTTACGCCATGGAATTTAGAGAGTCAAATAGCAAAAACAACCAAGATGGTGGGAGTAATAGCAATAATAATAGTAATGAAAATAATAGCAATGTGATTTCTACTAAAATTGTTAAGAAGCCATCGAAAGACCGTCACACCAAGGTGGATGGTCGAGGGCGGCGCATTCGAATGCCGGCTTTATGCGCCGCCAGGGTTTTTCAGCTAACCAAAGAATTGGGTCATAAGTCGGATGGCGAAACCATAGAGTGGCTATTGCAACAAGCTGAACCGTCGATTATAGCTGCGACGGGAACAGGTACAATTCCGGCTAATTTCTCAACTCTTAATGTCTCTTTACGCAGCAGCGGGACTACAATTTCAGCTCCGCCGTCGAAATCTGCGCCGCTTTTCATTCACGGCGGTGCTGCCACTATGCTGGGTTTCCACCACCAGATTCCGGGCAACAGTTTTGGGCAAGACCCAGATGAGAATTTCATGAAGAAGAGGTATAGAGAAGATACAACTGCAGCATCAACTTCACCATCGTCATCATCAGCTAAACCGGAAAGAACCGGAGTTCAAGGTCACGAACCGGATCAAGAATCGAAACCCGGTTCATCGAATCCCTCTAGCTACATACCGACTCCCGCCATGTGGGCTGTTGGTCCGGCGGCCGGTAACGTCGGAAACACGTTCTGGATGCTACCAGGTACCTCATCAACCATGCAGAGAATTGGTGGTTTCGAGTTACCGGGAGGTGGCCGGTTCAGTCCGGTTCAACTAGGATCAATGTTTTTGCAGCAGCCACAGCCGGTTCAGCAGCTGGGGTTGGGTGTGACAGAGACAAATATGGGAATGTTGGCATCGATGAATGCATATAACAGTAGTAGTAGTAGGGGTAGTGGGATTGATTTGGGGATGAATTTGGAACAACATCATCATCATCAAAATCAGCCTCAAGGTAGTGACAGTGGTGATGAAAATCACAAAGATTCCCAATCATAACTCCAACATTGATACCACAAAAGGATGTGTGGGACTGTTTTTGTCAAATCTCGAGTTTGAGTCATG</gDNA_template>
            <first_frame> F  C  F  G  S  F  C  T  T  T  C  F  H  L  S  L  F  S  F  P  K  N  F  Q  L  V  K  V  F  K  Y  Q  T  N  L  C  L  L  L  R  H  G  I  *  R  V  K  *  Q  K  Q  P  R  W  W  E  *  *  Q  *  *  *  *  *  K  *  *  Q  C  D  F  Y  *  N  C  *  E  A  I  E  R  P  S  H  Q  G  G  W  S  R  A  A  H  S  N  A  G  F  M  R  R  Q  G  F  S  A  N  Q  R  I  G  S  *  V  G  W  R  N  H  R  V  A  I  A  T  S  *  T  V  D  Y  S  C  D  G  N  R  Y  N  S  G  *  F  L  N  S  *  C  L  F  T  Q  Q  R  D  Y  N  F  S  S  A  V  E  I  C  A  A  F  H  S  R  R  C  C  H  Y  A  G  F  P  P  P  D  S  G  Q  Q  F  W  A  R  P  R  *  E  F  H  E  E  E  V  *  R  R  Y  N  C  S  I  N  F  T  I  V  I  I  S  *  T  G  K  N  R  S  S  R  S  R  T  G  S  R  I  E  T  R  F  I  E  S  L  *  L  H  T  D  S  R  H  V  G  C  W  S  G  G  R  *  R  R  K  H  V  L  D  A  T  R  Y  L  I  N  H  A  E  N  W  W  F  R  V  T  G  R  W  P  V  Q  S  G  S  T  R  I  N  V  F  A  A  A  T  A  G  S  A  A  G  V  G  C  D  R  D  K  Y  G  N  V  G  I  D  E  C  I  *  Q  *  *  *  *  G  *  W  D  *  F  G  D  E  F  G  T  T  S  S  S  S  K  S  A  S  R  *  *  Q  W  *  *  K  S  Q  R  F  P  I  I  T  P  T  L  I  P  Q  K  D  V  W  D  C  F  C  Q  I  S  S  L  S  H  </first_frame>
            <second_frame>  S  V  L  A  H  F  A  L  L  L  A  F  I  *  A  F  F  L  F  L  K  T  S  N  W  L  K  F  S  N  I  K  Q  I  F  V  C  C  Y  A  M  E  F  R  E  S  N  S  K  N  N  Q  D  G  G  S  N  S  N  N  N  S  N  E  N  N  S  N  V  I  S  T  K  I  V  K  K  P  S  K  D  R  H  T  K  V  D  G  R  G  R  R  I  R  M  P  A  L  C  A  A  R  V  F  Q  L  T  K  E  L  G  H  K  S  D  G  E  T  I  E  W  L  L  Q  Q  A  E  P  S  I  I  A  A  T  G  T  G  T  I  P  A  N  F  S  T  L  N  V  S  L  R  S  S  G  T  T  I  S  A  P  P  S  K  S  A  P  L  F  I  H  G  G  A  A  T  M  L  G  F  H  H  Q  I  P  G  N  S  F  G  Q  D  P  D  E  N  F  M  K  K  R  Y  R  E  D  T  T  A  A  S  T  S  P  S  S  S  S  A  K  P  E  R  T  G  V  Q  G  H  E  P  D  Q  E  S  K  P  G  S  S  N  P  S  S  Y  I  P  T  P  A  M  W  A  V  G  P  A  A  G  N  V  G  N  T  F  W  M  L  P  G  T  S  S  T  M  Q  R  I  G  G  F  E  L  P  G  G  G  R  F  S  P  V  Q  L  G  S  M  F  L  Q  Q  P  Q  P  V  Q  Q  L  G  L  G  V  T  E  T  N  M  G  M  L  A  S  M  N  A  Y  N  S  S  S  S  R  G  S  G  I  D  L  G  M  N  L  E  Q  H  H  H  H  Q  N  Q  P  Q  G  S  D  S  G  D  E  N  H  K  D  S  Q  S  *  L  Q  H  *  Y  H  K  R  M  C  G  T  V  F  V  K  S  R  V  *  V  M </second_frame>
            <third_frame>   L  F  W  L  I  L  H  Y  Y  L  L  S  F  E  P  F  F  F  S  *  K  L  P  I  G  *  S  F  Q  I  S  N  K  S  L  F  V  V  T  P  W  N  L  E  S  Q  I  A  K  T  T  K  M  V  G  V  I  A  I  I  I  V  M  K  I  I  A  M  *  F  L  L  K  L  L  R  S  H  R  K  T  V  T  P  R  W  M  V  E  G  G  A  F  E  C  R  L  Y  A  P  P  G  F  F  S  *  P  K  N  W  V  I  S  R  M  A  K  P  *  S  G  Y  C  N  K  L  N  R  R  L  *  L  R  R  E  Q  V  Q  F  R  L  I  S  Q  L  L  M  S  L  Y  A  A  A  G  L  Q  F  Q  L  R  R  R  N  L  R  R  F  S  F  T  A  V  L  P  L  C  W  V  S  T  T  R  F  R  A  T  V  L  G  K  T  Q  M  R  I  S  *  R  R  G  I  E  K  I  Q  L  Q  H  Q  L  H  H  R  H  H  Q  L  N  R  K  E  P  E  F  K  V  T  N  R  I  K  N  R  N  P  V  H  R  I  P  L  A  T  Y  R  L  P  P  C  G  L  L  V  R  R  P  V  T  S  E  T  R  S  G  C  Y  Q  V  P  H  Q  P  C  R  E  L  V  V  S  S  Y  R  E  V  A  G  S  V  R  F  N  *  D  Q  C  F  C  S  S  H  S  R  F  S  S  W  G  W  V  *  Q  R  Q  I  W  E  C  W  H  R  *  M  H  I  T  V  V  V  V  G  V  V  G  L  I  W  G  *  I  W  N  N  I  I  I  I  K  I  S  L  K  V  V  T  V  V  M  K  I  T  K  I  P  N  H  N  S  N  I  D  T  T  K  G  C  V  G  L  F  L  S  N  L  E  F  E  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0132E21.2" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="103077" stop="104132"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1053</number_coding_nucleotides>
                  <number_encoded_amino_acids>351</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AFFLFLKTSNWLKFSNIKQIFVCCYAMEFRESNSKNNQDGGSNSNNNSNENNSNVISTKIVKKPSKDRHTKVDGRGRRIRMPALCAARVFQLTKELGHKSDGETIEWLLQQAEPSIIAATGTGTIPANFSTLNVSLRSSGTTISAPPSKSAPLFIHGGAATMLGFHHQIPGNSFGQDPDENFMKKRYREDTTAASTSPSSSSAKPERTGVQGHEPDQESKPGSSNPSSYIPTPAMWAVGPAAGNVGNTFWMLPGTSSTMQRIGGFELPGGGRFSPVQLGSMFLQQPQPVQQLGLGVTETNMGMLASMNAYNSSSSRGSGIDLGMNLEQHHHHQNQPQGSDSGDENHKDSQS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="112389" PGL_stop="107055"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="112389" e_stop="112266"/>
            <exon e_start="109477" e_stop="108974"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="112389" e_stop="112266" e_length="124"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.999">
            <gDNA_intron_boundary i_start="112265" i_stop="109478" i_length="2788"/>
          </intron>
          <exon e_serial="2" e_score="0.996">
            <gDNA_exon_boundary e_start="109477" e_stop="108974" e_length="504"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112389" stop="112266"/>
              <exon start="109477" stop="109048"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724204" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112372" stop="112266"/>
              <exon start="109477" stop="109050"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716223" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112369" stop="112266"/>
              <exon start="109477" stop="109044"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288150" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112367" stop="112266"/>
              <exon start="109477" stop="109063"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284174" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112363" stop="112266"/>
              <exon start="109477" stop="109056"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312887" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112361" stop="112266"/>
              <exon start="109477" stop="109147"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E695322" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112356" stop="112266"/>
              <exon start="109477" stop="108974"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711222" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112347" stop="112266"/>
              <exon start="109477" stop="109067"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339278" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112321" stop="112266"/>
              <exon start="109477" stop="109050"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282952" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112314" stop="112266"/>
              <exon start="109477" stop="109050"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327014" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109417" stop="109015"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349432" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109413" stop="109050"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282226" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTAAACTTAACCCTATCGAAACTACTCCGAGCGTCCATAGCAGGAAAACGAACAAAGGCAAGAGAACGGCGATGGCGTTGAACAACGGTTTGCGTTCATGTGCATCCCTTATCTCCAAAACTG : TGAAGAGAGAGTTCCACTCAACAGGCGTCAAGAGAATGGGAGGTCATGGACATGACGAACCTTTTTACATTCACGCAAAACACATGTACAACTTGGACAGGATGTCAAACCAGAAGCTGAAGATGACTCTTGGTGTCTGGTCTGCAGTCGCCATTGGTGTTATAGTCCCAGTTTATGCTGTCGTCTTCCAGCAAAAGAAAACTGCTTCTGGCTAGATCATCATGCTATTACGTCTCCACCACAATAATGCTGCCCTTGGAGCTTCCATGTATGAAGATGAACCTATTGAATTAGAGAGCATTAAATAGCTTTCAGTTTTGACTTAGCTTTACCCTGGTGGTTGCTTTTCTTGTTTCTGTTTTGGCACAACATTGGTATGCCTGGTTCATTAATAATATTTTCTTAACTGAAAACCATATTGGTTGAACATGTGTCTGATTTAATATCCATTTTCTGACTGGCAATTACTCCTATCAATTCAAAGAGAATGTTCTTCCTTTTGGG</gDNA_template>
            <first_frame> F  K  L  N  P  I  E  T  T  P  S  V  H  S  R  K  T  N  K  G  K  R  T  A  M  A  L  N  N  G  L  R  S  C  A  S  L  I  S  K  T   : V  K  R  E  F  H  S  T  G  V  K  R  M  G  G  H  G  H  D  E  P  F  Y  I  H  A  K  H  M  Y  N  L  D  R  M  S  N  Q  K  L  K  M  T  L  G  V  W  S  A  V  A  I  G  V  I  V  P  V  Y  A  V  V  F  Q  Q  K  K  T  A  S  G  *  I  I  M  L  L  R  L  H  H  N  N  A  A  L  G  A  S  M  Y  E  D  E  P  I  E  L  E  S  I  K  *  L  S  V  L  T  *  L  Y  P  G  G  C  F  S  C  F  C  F  G  T  T  L  V  C  L  V  H  *  *  Y  F  L  N  *  K  P  Y  W  L  N  M  C  L  I  *  Y  P  F  S  D  W  Q  L  L  L  S  I  Q  R  E  C  S  S  F  W  </first_frame>
            <second_frame>  L  N  L  T  L  S  K  L  L  R  A  S  I  A  G  K  R  T  K  A  R  E  R  R  W  R  *  T  T  V  C  V  H  V  H  P  L  S  P  K  L  :  *  R  E  S  S  T  Q  Q  A  S  R  E  W  E  V  M  D  M  T  N  L  F  T  F  T  Q  N  T  C  T  T  W  T  G  C  Q  T  R  S  *  R  *  L  L  V  S  G  L  Q  S  P  L  V  L  *  S  Q  F  M  L  S  S  S  S  K  R  K  L  L  L  A  R  S  S  C  Y  Y  V  S  T  T  I  M  L  P  L  E  L  P  C  M  K  M  N  L  L  N  *  R  A  L  N  S  F  Q  F  *  L  S  F  T  L  V  V  A  F  L  V  S  V  L  A  Q  H  W  Y  A  W  F  I  N  N  I  F  L  T  E  N  H  I  G  *  T  C  V  *  F  N  I  H  F  L  T  G  N  Y  S  Y  Q  F  K  E  N  V  L  P  F  G </second_frame>
            <third_frame>   *  T  *  P  Y  R  N  Y  S  E  R  P  *  Q  E  N  E  Q  R  Q  E  N  G  D  G  V  E  Q  R  F  A  F  M  C  I  P  Y  L  Q  N  C :   E  E  R  V  P  L  N  R  R  Q  E  N  G  R  S  W  T  *  R  T  F  L  H  S  R  K  T  H  V  Q  L  G  Q  D  V  K  P  E  A  E  D  D  S  W  C  L  V  C  S  R  H  W  C  Y  S  P  S  L  C  C  R  L  P  A  K  E  N  C  F  W  L  D  H  H  A  I  T  S  P  P  Q  *  C  C  P  W  S  F  H  V  *  R  *  T  Y  *  I  R  E  H  *  I  A  F  S  F  D  L  A  L  P  W  W  L  L  F  L  F  L  F  W  H  N  I  G  M  P  G  S  L  I  I  F  S  *  L  K  T  I  L  V  E  H  V  S  D  L  I  S  I  F  *  L  A  I  T  P  I  N  S  K  R  M  F  F  L  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0132E21.2" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="112389" stop="112266"/>
                    <exon start="109477" stop="109263"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>336</number_coding_nucleotides>
                  <number_encoded_amino_acids>112</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FKLNPIETTPSVHSRKTNKGKRTAMALNNGLRSCASLISKTVKREFHSTGVKRMGGHGHDEPFYIHAKHMYNLDRMSNQKLKMTLGVWSAVAIGVIVPVYAVVFQQKKTASG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="112389" e_stop="112266"/>
            <exon e_start="109477" e_stop="109015"/>
            <exon e_start="108199" e_stop="108193"/>
            <exon e_start="108062" e_stop="108021"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.900" acc_prob="0.000" e_score="0.857"/>
          <exon-only e_score="0.619"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="112389" e_stop="112266" e_length="124"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.999">
            <gDNA_intron_boundary i_start="112265" i_stop="109478" i_length="2788"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="109477" e_stop="109015" e_length="463"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="109014" i_stop="108200" i_length="815"/>
          </intron>
          <exon e_serial="3" e_score="0.857">
            <gDNA_exon_boundary e_start="108199" e_stop="108193" e_length="7"/>
          </exon>
          <intron i_serial="3" don_prob="0.900" acc_prob="0.000">
            <gDNA_intron_boundary i_start="108192" i_stop="108063" i_length="130"/>
          </intron>
          <exon e_serial="4" e_score="0.619">
            <gDNA_exon_boundary e_start="108062" e_stop="108021" e_length="42"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112389" stop="112266"/>
              <exon start="109477" stop="109048"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724204" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112372" stop="112266"/>
              <exon start="109477" stop="109050"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716223" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112369" stop="112266"/>
              <exon start="109477" stop="109044"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288150" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112367" stop="112266"/>
              <exon start="109477" stop="109063"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284174" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112363" stop="112266"/>
              <exon start="109477" stop="109056"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312887" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112361" stop="112266"/>
              <exon start="109477" stop="109147"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E695322" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112350" stop="112266"/>
              <exon start="109477" stop="109015"/>
              <exon start="108199" stop="108193"/>
              <exon start="108062" stop="108021"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E552082" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112347" stop="112266"/>
              <exon start="109477" stop="109067"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339278" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112321" stop="112266"/>
              <exon start="109477" stop="109050"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282952" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112314" stop="112266"/>
              <exon start="109477" stop="109050"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327014" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109417" stop="109015"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349432" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109413" stop="109050"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282226" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTAAACTTAACCCTATCGAAACTACTCCGAGCGTCCATAGCAGGAAAACGAACAAAGGCAAGAGAACGGCGATGGCGTTGAACAACGGTTTGCGTTCATGTGCATCCCTTATCTCCAAAACTG : TGAAGAGAGAGTTCCACTCAACAGGCGTCAAGAGAATGGGAGGTCATGGACATGACGAACCTTTTTACATTCACGCAAAACACATGTACAACTTGGACAGGATGTCAAACCAGAAGCTGAAGATGACTCTTGGTGTCTGGTCTGCAGTCGCCATTGGTGTTATAGTCCCAGTTTATGCTGTCGTCTTCCAGCAAAAGAAAACTGCTTCTGGCTAGATCATCATGCTATTACGTCTCCACCACAATAATGCTGCCCTTGGAGCTTCCATGTATGAAGATGAACCTATTGAATTAGAGAGCATTAAATAGCTTTCAGTTTTGACTTAGCTTTACCCTGGTGGTTGCTTTTCTTGTTTCTGTTTTGGCACAACATTGGTATGCCTGGTTCATTAATAATATTTTCTTAACTGAAAACCATATTGGTTGAACATGTGTCTGATTTAATATCCATTTTCTGACTGGCA : AAAAGAA : CTAAATTAAAATACTATCTCTTAAAAAAATATAAAACAAAAA</gDNA_template>
            <first_frame> F  K  L  N  P  I  E  T  T  P  S  V  H  S  R  K  T  N  K  G  K  R  T  A  M  A  L  N  N  G  L  R  S  C  A  S  L  I  S  K  T   : V  K  R  E  F  H  S  T  G  V  K  R  M  G  G  H  G  H  D  E  P  F  Y  I  H  A  K  H  M  Y  N  L  D  R  M  S  N  Q  K  L  K  M  T  L  G  V  W  S  A  V  A  I  G  V  I  V  P  V  Y  A  V  V  F  Q  Q  K  K  T  A  S  G  *  I  I  M  L  L  R  L  H  H  N  N  A  A  L  G  A  S  M  Y  E  D  E  P  I  E  L  E  S  I  K  *  L  S  V  L  T  *  L  Y  P  G  G  C  F  S  C  F  C  F  G  T  T  L  V  C  L  V  H  *  *  Y  F  L  N  *  K  P  Y  W  L  N  M  C  L  I  *  Y  P  F  S  D  W  Q :   K  E  :  L  N  *  N  T  I  S  *  K  N  I  K  Q  K </first_frame>
            <second_frame>  L  N  L  T  L  S  K  L  L  R  A  S  I  A  G  K  R  T  K  A  R  E  R  R  W  R  *  T  T  V  C  V  H  V  H  P  L  S  P  K  L  :  *  R  E  S  S  T  Q  Q  A  S  R  E  W  E  V  M  D  M  T  N  L  F  T  F  T  Q  N  T  C  T  T  W  T  G  C  Q  T  R  S  *  R  *  L  L  V  S  G  L  Q  S  P  L  V  L  *  S  Q  F  M  L  S  S  S  S  K  R  K  L  L  L  A  R  S  S  C  Y  Y  V  S  T  T  I  M  L  P  L  E  L  P  C  M  K  M  N  L  L  N  *  R  A  L  N  S  F  Q  F  *  L  S  F  T  L  V  V  A  F  L  V  S  V  L  A  Q  H  W  Y  A  W  F  I  N  N  I  F  L  T  E  N  H  I  G  *  T  C  V  *  F  N  I  H  F  L  T  G   : K  K  N :   *  I  K  I  L  S  L  K  K  I  *  N  K   </second_frame>
            <third_frame>   *  T  *  P  Y  R  N  Y  S  E  R  P  *  Q  E  N  E  Q  R  Q  E  N  G  D  G  V  E  Q  R  F  A  F  M  C  I  P  Y  L  Q  N  C :   E  E  R  V  P  L  N  R  R  Q  E  N  G  R  S  W  T  *  R  T  F  L  H  S  R  K  T  H  V  Q  L  G  Q  D  V  K  P  E  A  E  D  D  S  W  C  L  V  C  S  R  H  W  C  Y  S  P  S  L  C  C  R  L  P  A  K  E  N  C  F  W  L  D  H  H  A  I  T  S  P  P  Q  *  C  C  P  W  S  F  H  V  *  R  *  T  Y  *  I  R  E  H  *  I  A  F  S  F  D  L  A  L  P  W  W  L  L  F  L  F  L  F  W  H  N  I  G  M  P  G  S  L  I  I  F  S  *  L  K  T  I  L  V  E  H  V  S  D  L  I  S  I  F  *  L  A  :  K  R   : T  K  L  K  Y  Y  L  L  K  K  Y  K  T  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0132E21.2" strand="-"/>
                <serials PGL_serial="14" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="112389" stop="112266"/>
                    <exon start="109477" stop="109263"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>336</number_coding_nucleotides>
                  <number_encoded_amino_acids>112</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FKLNPIETTPSVHSRKTNKGKRTAMALNNGLRSCASLISKTVKREFHSTGVKRMGGHGHDEPFYIHAKHMYNLDRMSNQKLKMTLGVWSAVAIGVIVPVYAVVFQQKKTASG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="112389" e_stop="112266"/>
            <exon e_start="109477" e_stop="109046"/>
            <exon e_start="108757" e_stop="108715"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.335" e_score="0.998"/>
          <exon-only e_score="0.442"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="112389" e_stop="112266" e_length="124"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.999">
            <gDNA_intron_boundary i_start="112265" i_stop="109478" i_length="2788"/>
          </intron>
          <exon e_serial="2" e_score="0.998">
            <gDNA_exon_boundary e_start="109477" e_stop="109046" e_length="432"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.335">
            <gDNA_intron_boundary i_start="109045" i_stop="108758" i_length="288"/>
          </intron>
          <exon e_serial="3" e_score="0.442">
            <gDNA_exon_boundary e_start="108757" e_stop="108715" e_length="43"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112389" stop="112266"/>
              <exon start="109477" stop="109048"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724204" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112372" stop="112266"/>
              <exon start="109477" stop="109050"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716223" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112367" stop="112266"/>
              <exon start="109477" stop="109063"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284174" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112363" stop="112266"/>
              <exon start="109477" stop="109056"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312887" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112361" stop="112266"/>
              <exon start="109477" stop="109147"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E695322" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112347" stop="112266"/>
              <exon start="109477" stop="109067"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339278" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112321" stop="112266"/>
              <exon start="109477" stop="109050"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282952" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112314" stop="112266"/>
              <exon start="109477" stop="109050"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327014" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109413" stop="109050"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282226" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109388" stop="109046"/>
              <exon start="108757" stop="108715"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736384" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTAAACTTAACCCTATCGAAACTACTCCGAGCGTCCATAGCAGGAAAACGAACAAAGGCAAGAGAACGGCGATGGCGTTGAACAACGGTTTGCGTTCATGTGCATCCCTTATCTCCAAAACTG : TGAAGAGAGAGTTCCACTCAACAGGCGTCAAGAGAATGGGAGGTCATGGACATGACGAACCTTTTTACATTCACGCAAAACACATGTACAACTTGGACAGGATGTCAAACCAGAAGCTGAAGATGACTCTTGGTGTCTGGTCTGCAGTCGCCATTGGTGTTATAGTCCCAGTTTATGCTGTCGTCTTCCAGCAAAAGAAAACTGCTTCTGGCTAGATCATCATGCTATTACGTCTCCACCACAATAATGCTGCCCTTGGAGCTTCCATGTATGAAGATGAACCTATTGAATTAGAGAGCATTAAATAGCTTTCAGTTTTGACTTAGCTTTACCCTGGTGGTTGCTTTTCTTGTTTCTGTTTTGGCACAACATTGGTATGCCTGGTTCATTAATAATATTTTCTTAACTGAAAACCATATTGGTTGAACATGT : AATTGCATAAGTTCATGTAAGAGAATCCTAGGCCAGTTTTATG</gDNA_template>
            <first_frame> F  K  L  N  P  I  E  T  T  P  S  V  H  S  R  K  T  N  K  G  K  R  T  A  M  A  L  N  N  G  L  R  S  C  A  S  L  I  S  K  T   : V  K  R  E  F  H  S  T  G  V  K  R  M  G  G  H  G  H  D  E  P  F  Y  I  H  A  K  H  M  Y  N  L  D  R  M  S  N  Q  K  L  K  M  T  L  G  V  W  S  A  V  A  I  G  V  I  V  P  V  Y  A  V  V  F  Q  Q  K  K  T  A  S  G  *  I  I  M  L  L  R  L  H  H  N  N  A  A  L  G  A  S  M  Y  E  D  E  P  I  E  L  E  S  I  K  *  L  S  V  L  T  *  L  Y  P  G  G  C  F  S  C  F  C  F  G  T  T  L  V  C  L  V  H  *  *  Y  F  L  N  *  K  P  Y  W  L  N  M   : *  L  H  K  F  M  *  E  N  P  R  P  V  L   </first_frame>
            <second_frame>  L  N  L  T  L  S  K  L  L  R  A  S  I  A  G  K  R  T  K  A  R  E  R  R  W  R  *  T  T  V  C  V  H  V  H  P  L  S  P  K  L  :  *  R  E  S  S  T  Q  Q  A  S  R  E  W  E  V  M  D  M  T  N  L  F  T  F  T  Q  N  T  C  T  T  W  T  G  C  Q  T  R  S  *  R  *  L  L  V  S  G  L  Q  S  P  L  V  L  *  S  Q  F  M  L  S  S  S  S  K  R  K  L  L  L  A  R  S  S  C  Y  Y  V  S  T  T  I  M  L  P  L  E  L  P  C  M  K  M  N  L  L  N  *  R  A  L  N  S  F  Q  F  *  L  S  F  T  L  V  V  A  F  L  V  S  V  L  A  Q  H  W  Y  A  W  F  I  N  N  I  F  L  T  E  N  H  I  G  *  T  C  :  N  C  I  S  S  C  K  R  I  L  G  Q  F  Y  </second_frame>
            <third_frame>   *  T  *  P  Y  R  N  Y  S  E  R  P  *  Q  E  N  E  Q  R  Q  E  N  G  D  G  V  E  Q  R  F  A  F  M  C  I  P  Y  L  Q  N  C :   E  E  R  V  P  L  N  R  R  Q  E  N  G  R  S  W  T  *  R  T  F  L  H  S  R  K  T  H  V  Q  L  G  Q  D  V  K  P  E  A  E  D  D  S  W  C  L  V  C  S  R  H  W  C  Y  S  P  S  L  C  C  R  L  P  A  K  E  N  C  F  W  L  D  H  H  A  I  T  S  P  P  Q  *  C  C  P  W  S  F  H  V  *  R  *  T  Y  *  I  R  E  H  *  I  A  F  S  F  D  L  A  L  P  W  W  L  L  F  L  F  L  F  W  H  N  I  G  M  P  G  S  L  I  I  F  S  *  L  K  T  I  L  V  E  H  V :   I  A  *  V  H  V  R  E  S  *  A  S  F  M </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0132E21.2" strand="-"/>
                <serials PGL_serial="14" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="112389" stop="112266"/>
                    <exon start="109477" stop="109263"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>336</number_coding_nucleotides>
                  <number_encoded_amino_acids>112</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FKLNPIETTPSVHSRKTNKGKRTAMALNNGLRSCASLISKTVKREFHSTGVKRMGGHGHDEPFYIHAKHMYNLDRMSNQKLKMTLGVWSAVAIGVIVPVYAVVFQQKKTASG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="112389" e_stop="112266"/>
            <exon e_start="109477" e_stop="109048"/>
            <exon e_start="108040" e_stop="107975"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.998"/>
          <exon-only e_score="0.576"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="112389" e_stop="112266" e_length="124"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.999">
            <gDNA_intron_boundary i_start="112265" i_stop="109478" i_length="2788"/>
          </intron>
          <exon e_serial="2" e_score="0.998">
            <gDNA_exon_boundary e_start="109477" e_stop="109048" e_length="430"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="109047" i_stop="108041" i_length="1007"/>
          </intron>
          <exon e_serial="3" e_score="0.576">
            <gDNA_exon_boundary e_start="108040" e_stop="107975" e_length="66"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112389" stop="112266"/>
              <exon start="109477" stop="109048"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724204" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112372" stop="112266"/>
              <exon start="109477" stop="109050"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716223" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112367" stop="112266"/>
              <exon start="109477" stop="109063"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284174" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112363" stop="112266"/>
              <exon start="109477" stop="109056"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312887" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112361" stop="112266"/>
              <exon start="109477" stop="109147"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E695322" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112347" stop="112266"/>
              <exon start="109477" stop="109067"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339278" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112321" stop="112266"/>
              <exon start="109477" stop="109050"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282952" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112314" stop="112266"/>
              <exon start="109477" stop="109050"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327014" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112305" stop="112266"/>
              <exon start="109477" stop="109048"/>
              <exon start="108040" stop="107975"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722972" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109413" stop="109050"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282226" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTAAACTTAACCCTATCGAAACTACTCCGAGCGTCCATAGCAGGAAAACGAACAAAGGCAAGAGAACGGCGATGGCGTTGAACAACGGTTTGCGTTCATGTGCATCCCTTATCTCCAAAACTG : TGAAGAGAGAGTTCCACTCAACAGGCGTCAAGAGAATGGGAGGTCATGGACATGACGAACCTTTTTACATTCACGCAAAACACATGTACAACTTGGACAGGATGTCAAACCAGAAGCTGAAGATGACTCTTGGTGTCTGGTCTGCAGTCGCCATTGGTGTTATAGTCCCAGTTTATGCTGTCGTCTTCCAGCAAAAGAAAACTGCTTCTGGCTAGATCATCATGCTATTACGTCTCCACCACAATAATGCTGCCCTTGGAGCTTCCATGTATGAAGATGAACCTATTGAATTAGAGAGCATTAAATAGCTTTCAGTTTTGACTTAGCTTTACCCTGGTGGTTGCTTTTCTTGTTTCTGTTTTGGCACAACATTGGTATGCCTGGTTCATTAATAATATTTTCTTAACTGAAAACCATATTGGTTGAACAT : AAAAAAATATAAAACAAAAATTTATCACCTCAAACCCAATTAAATATGAATACGATAAACATTTCC</gDNA_template>
            <first_frame> F  K  L  N  P  I  E  T  T  P  S  V  H  S  R  K  T  N  K  G  K  R  T  A  M  A  L  N  N  G  L  R  S  C  A  S  L  I  S  K  T   : V  K  R  E  F  H  S  T  G  V  K  R  M  G  G  H  G  H  D  E  P  F  Y  I  H  A  K  H  M  Y  N  L  D  R  M  S  N  Q  K  L  K  M  T  L  G  V  W  S  A  V  A  I  G  V  I  V  P  V  Y  A  V  V  F  Q  Q  K  K  T  A  S  G  *  I  I  M  L  L  R  L  H  H  N  N  A  A  L  G  A  S  M  Y  E  D  E  P  I  E  L  E  S  I  K  *  L  S  V  L  T  *  L  Y  P  G  G  C  F  S  C  F  C  F  G  T  T  L  V  C  L  V  H  *  *  Y  F  L  N  *  K  P  Y  W  L  N  I :   K  K  Y  K  T  K  I  Y  H  L  K  P  N  *  I  *  I  R  *  T  F   </first_frame>
            <second_frame>  L  N  L  T  L  S  K  L  L  R  A  S  I  A  G  K  R  T  K  A  R  E  R  R  W  R  *  T  T  V  C  V  H  V  H  P  L  S  P  K  L  :  *  R  E  S  S  T  Q  Q  A  S  R  E  W  E  V  M  D  M  T  N  L  F  T  F  T  Q  N  T  C  T  T  W  T  G  C  Q  T  R  S  *  R  *  L  L  V  S  G  L  Q  S  P  L  V  L  *  S  Q  F  M  L  S  S  S  S  K  R  K  L  L  L  A  R  S  S  C  Y  Y  V  S  T  T  I  M  L  P  L  E  L  P  C  M  K  M  N  L  L  N  *  R  A  L  N  S  F  Q  F  *  L  S  F  T  L  V  V  A  F  L  V  S  V  L  A  Q  H  W  Y  A  W  F  I  N  N  I  F  L  T  E  N  H  I  G  *  T   : *  K  N  I  K  Q  K  F  I  T  S  N  P  I  K  Y  E  Y  D  K  H  F  </second_frame>
            <third_frame>   *  T  *  P  Y  R  N  Y  S  E  R  P  *  Q  E  N  E  Q  R  Q  E  N  G  D  G  V  E  Q  R  F  A  F  M  C  I  P  Y  L  Q  N  C :   E  E  R  V  P  L  N  R  R  Q  E  N  G  R  S  W  T  *  R  T  F  L  H  S  R  K  T  H  V  Q  L  G  Q  D  V  K  P  E  A  E  D  D  S  W  C  L  V  C  S  R  H  W  C  Y  S  P  S  L  C  C  R  L  P  A  K  E  N  C  F  W  L  D  H  H  A  I  T  S  P  P  Q  *  C  C  P  W  S  F  H  V  *  R  *  T  Y  *  I  R  E  H  *  I  A  F  S  F  D  L  A  L  P  W  W  L  L  F  L  F  L  F  W  H  N  I  G  M  P  G  S  L  I  I  F  S  *  L  K  T  I  L  V  E  H  :  K  K  I  *  N  K  N  L  S  P  Q  T  Q  L  N  M  N  T  I  N  I  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0132E21.2" strand="-"/>
                <serials PGL_serial="14" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="112389" stop="112266"/>
                    <exon start="109477" stop="109263"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>336</number_coding_nucleotides>
                  <number_encoded_amino_acids>112</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FKLNPIETTPSVHSRKTNKGKRTAMALNNGLRSCASLISKTVKREFHSTGVKRMGGHGHDEPFYIHAKHMYNLDRMSNQKLKMTLGVWSAVAIGVIVPVYAVVFQQKKTASG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="112389" e_stop="112266"/>
            <exon e_start="109477" e_stop="109048"/>
            <exon e_start="108757" e_stop="108747"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.335" e_score="0.998"/>
          <exon-only e_score="0.455"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="112389" e_stop="112266" e_length="124"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.999">
            <gDNA_intron_boundary i_start="112265" i_stop="109478" i_length="2788"/>
          </intron>
          <exon e_serial="2" e_score="0.998">
            <gDNA_exon_boundary e_start="109477" e_stop="109048" e_length="430"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.335">
            <gDNA_intron_boundary i_start="109047" i_stop="108758" i_length="290"/>
          </intron>
          <exon e_serial="3" e_score="0.455">
            <gDNA_exon_boundary e_start="108757" e_stop="108747" e_length="11"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112389" stop="112266"/>
              <exon start="109477" stop="109048"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724204" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112372" stop="112266"/>
              <exon start="109477" stop="109050"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716223" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112367" stop="112266"/>
              <exon start="109477" stop="109048"/>
              <exon start="108757" stop="108747"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E693138" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112367" stop="112266"/>
              <exon start="109477" stop="109063"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284174" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112363" stop="112266"/>
              <exon start="109477" stop="109056"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312887" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112361" stop="112266"/>
              <exon start="109477" stop="109147"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E695322" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112347" stop="112266"/>
              <exon start="109477" stop="109067"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339278" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112321" stop="112266"/>
              <exon start="109477" stop="109050"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282952" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112314" stop="112266"/>
              <exon start="109477" stop="109050"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327014" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109413" stop="109050"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282226" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="5" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTAAACTTAACCCTATCGAAACTACTCCGAGCGTCCATAGCAGGAAAACGAACAAAGGCAAGAGAACGGCGATGGCGTTGAACAACGGTTTGCGTTCATGTGCATCCCTTATCTCCAAAACTG : TGAAGAGAGAGTTCCACTCAACAGGCGTCAAGAGAATGGGAGGTCATGGACATGACGAACCTTTTTACATTCACGCAAAACACATGTACAACTTGGACAGGATGTCAAACCAGAAGCTGAAGATGACTCTTGGTGTCTGGTCTGCAGTCGCCATTGGTGTTATAGTCCCAGTTTATGCTGTCGTCTTCCAGCAAAAGAAAACTGCTTCTGGCTAGATCATCATGCTATTACGTCTCCACCACAATAATGCTGCCCTTGGAGCTTCCATGTATGAAGATGAACCTATTGAATTAGAGAGCATTAAATAGCTTTCAGTTTTGACTTAGCTTTACCCTGGTGGTTGCTTTTCTTGTTTCTGTTTTGGCACAACATTGGTATGCCTGGTTCATTAATAATATTTTCTTAACTGAAAACCATATTGGTTGAACAT : AATTGCATAAG</gDNA_template>
            <first_frame> F  K  L  N  P  I  E  T  T  P  S  V  H  S  R  K  T  N  K  G  K  R  T  A  M  A  L  N  N  G  L  R  S  C  A  S  L  I  S  K  T   : V  K  R  E  F  H  S  T  G  V  K  R  M  G  G  H  G  H  D  E  P  F  Y  I  H  A  K  H  M  Y  N  L  D  R  M  S  N  Q  K  L  K  M  T  L  G  V  W  S  A  V  A  I  G  V  I  V  P  V  Y  A  V  V  F  Q  Q  K  K  T  A  S  G  *  I  I  M  L  L  R  L  H  H  N  N  A  A  L  G  A  S  M  Y  E  D  E  P  I  E  L  E  S  I  K  *  L  S  V  L  T  *  L  Y  P  G  G  C  F  S  C  F  C  F  G  T  T  L  V  C  L  V  H  *  *  Y  F  L  N  *  K  P  Y  W  L  N  I :   I  A  *  </first_frame>
            <second_frame>  L  N  L  T  L  S  K  L  L  R  A  S  I  A  G  K  R  T  K  A  R  E  R  R  W  R  *  T  T  V  C  V  H  V  H  P  L  S  P  K  L  :  *  R  E  S  S  T  Q  Q  A  S  R  E  W  E  V  M  D  M  T  N  L  F  T  F  T  Q  N  T  C  T  T  W  T  G  C  Q  T  R  S  *  R  *  L  L  V  S  G  L  Q  S  P  L  V  L  *  S  Q  F  M  L  S  S  S  S  K  R  K  L  L  L  A  R  S  S  C  Y  Y  V  S  T  T  I  M  L  P  L  E  L  P  C  M  K  M  N  L  L  N  *  R  A  L  N  S  F  Q  F  *  L  S  F  T  L  V  V  A  F  L  V  S  V  L  A  Q  H  W  Y  A  W  F  I  N  N  I  F  L  T  E  N  H  I  G  *  T   : *  L  H  K </second_frame>
            <third_frame>   *  T  *  P  Y  R  N  Y  S  E  R  P  *  Q  E  N  E  Q  R  Q  E  N  G  D  G  V  E  Q  R  F  A  F  M  C  I  P  Y  L  Q  N  C :   E  E  R  V  P  L  N  R  R  Q  E  N  G  R  S  W  T  *  R  T  F  L  H  S  R  K  T  H  V  Q  L  G  Q  D  V  K  P  E  A  E  D  D  S  W  C  L  V  C  S  R  H  W  C  Y  S  P  S  L  C  C  R  L  P  A  K  E  N  C  F  W  L  D  H  H  A  I  T  S  P  P  Q  *  C  C  P  W  S  F  H  V  *  R  *  T  Y  *  I  R  E  H  *  I  A  F  S  F  D  L  A  L  P  W  W  L  L  F  L  F  L  F  W  H  N  I  G  M  P  G  S  L  I  I  F  S  *  L  K  T  I  L  V  E  H  :  N  C  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0132E21.2" strand="-"/>
                <serials PGL_serial="14" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="112389" stop="112266"/>
                    <exon start="109477" stop="109263"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>336</number_coding_nucleotides>
                  <number_encoded_amino_acids>112</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FKLNPIETTPSVHSRKTNKGKRTAMALNNGLRSCASLISKTVKREFHSTGVKRMGGHGHDEPFYIHAKHMYNLDRMSNQKLKMTLGVWSAVAIGVIVPVYAVVFQQKKTASG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="6">
          <exon_coordinates>
            <exon e_start="112367" e_stop="112266"/>
            <exon e_start="109477" e_stop="109051"/>
            <exon e_start="108889" e_stop="108874"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.998"/>
          <exon-only e_score="0.750"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="112367" e_stop="112266" e_length="102"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.999">
            <gDNA_intron_boundary i_start="112265" i_stop="109478" i_length="2788"/>
          </intron>
          <exon e_serial="2" e_score="0.998">
            <gDNA_exon_boundary e_start="109477" e_stop="109051" e_length="427"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="109050" i_stop="108890" i_length="161"/>
          </intron>
          <exon e_serial="3" e_score="0.750">
            <gDNA_exon_boundary e_start="108889" e_stop="108874" e_length="16"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112367" stop="112266"/>
              <exon start="109477" stop="109063"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284174" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112363" stop="112266"/>
              <exon start="109477" stop="109056"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312887" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112361" stop="112266"/>
              <exon start="109477" stop="109147"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E695322" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112347" stop="112266"/>
              <exon start="109477" stop="109067"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339278" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109416" stop="109051"/>
              <exon start="108889" stop="108874"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229376" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="6" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTACTCCGAGCGTCCATAGCAGGAAAACGAACAAAGGCAAGAGAACGGCGATGGCGTTGAACAACGGTTTGCGTTCATGTGCATCCCTTATCTCCAAAACTG : TGAAGAGAGAGTTCCACTCAACAGGCGTCAAGAGAATGGGAGGTCATGGACATGACGAACCTTTTTACATTCACGCAAAACACATGTACAACTTGGACAGGATGTCAAACCAGAAGCTGAAGATGACTCTTGGTGTCTGGTCTGCAGTCGCCATTGGTGTTATAGTCCCAGTTTATGCTGTCGTCTTCCAGCAAAAGAAAACTGCTTCTGGCTAGATCATCATGCTATTACGTCTCCACCACAATAATGCTGCCCTTGGAGCTTCCATGTATGAAGATGAACCTATTGAATTAGAGAGCATTAAATAGCTTTCAGTTTTGACTTAGCTTTACCCTGGTGGTTGCTTTTCTTGTTTCTGTTTTGGCACAACATTGGTATGCCTGGTTCATTAATAATATTTTCTTAACTGAAAACCATATTGGTTGAA : TAAAATAAAAGGAAAA</gDNA_template>
            <first_frame> L  L  R  A  S  I  A  G  K  R  T  K  A  R  E  R  R  W  R  *  T  T  V  C  V  H  V  H  P  L  S  P  K  L  :  *  R  E  S  S  T  Q  Q  A  S  R  E  W  E  V  M  D  M  T  N  L  F  T  F  T  Q  N  T  C  T  T  W  T  G  C  Q  T  R  S  *  R  *  L  L  V  S  G  L  Q  S  P  L  V  L  *  S  Q  F  M  L  S  S  S  S  K  R  K  L  L  L  A  R  S  S  C  Y  Y  V  S  T  T  I  M  L  P  L  E  L  P  C  M  K  M  N  L  L  N  *  R  A  L  N  S  F  Q  F  *  L  S  F  T  L  V  V  A  F  L  V  S  V  L  A  Q  H  W  Y  A  W  F  I  N  N  I  F  L  T  E  N  H  I  G  *   : I  K  *  K  E   </first_frame>
            <second_frame>  Y  S  E  R  P  *  Q  E  N  E  Q  R  Q  E  N  G  D  G  V  E  Q  R  F  A  F  M  C  I  P  Y  L  Q  N  C :   E  E  R  V  P  L  N  R  R  Q  E  N  G  R  S  W  T  *  R  T  F  L  H  S  R  K  T  H  V  Q  L  G  Q  D  V  K  P  E  A  E  D  D  S  W  C  L  V  C  S  R  H  W  C  Y  S  P  S  L  C  C  R  L  P  A  K  E  N  C  F  W  L  D  H  H  A  I  T  S  P  P  Q  *  C  C  P  W  S  F  H  V  *  R  *  T  Y  *  I  R  E  H  *  I  A  F  S  F  D  L  A  L  P  W  W  L  L  F  L  F  L  F  W  H  N  I  G  M  P  G  S  L  I  I  F  S  *  L  K  T  I  L  V  E  :  *  N  K  R  K  </second_frame>
            <third_frame>   T  P  S  V  H  S  R  K  T  N  K  G  K  R  T  A  M  A  L  N  N  G  L  R  S  C  A  S  L  I  S  K  T   : V  K  R  E  F  H  S  T  G  V  K  R  M  G  G  H  G  H  D  E  P  F  Y  I  H  A  K  H  M  Y  N  L  D  R  M  S  N  Q  K  L  K  M  T  L  G  V  W  S  A  V  A  I  G  V  I  V  P  V  Y  A  V  V  F  Q  Q  K  K  T  A  S  G  *  I  I  M  L  L  R  L  H  H  N  N  A  A  L  G  A  S  M  Y  E  D  E  P  I  E  L  E  S  I  K  *  L  S  V  L  T  *  L  Y  P  G  G  C  F  S  C  F  C  F  G  T  T  L  V  C  L  V  H  *  *  Y  F  L  N  *  K  P  Y  W  L  N :   K  I  K  G  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0132E21.2" strand="-"/>
                <serials PGL_serial="14" AGS_serial="6" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="112365" stop="112266"/>
                    <exon start="109477" stop="109263"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>312</number_coding_nucleotides>
                  <number_encoded_amino_acids>104</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TPSVHSRKTNKGKRTAMALNNGLRSCASLISKTVKREFHSTGVKRMGGHGHDEPFYIHAKHMYNLDRMSNQKLKMTLGVWSAVAIGVIVPVYAVVFQQKKTASG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="7">
          <exon_coordinates>
            <exon e_start="112367" e_stop="112266"/>
            <exon e_start="109477" e_stop="109051"/>
            <exon e_start="108199" e_stop="108193"/>
            <exon e_start="108040" e_stop="107973"/>
            <exon e_start="107074" e_stop="107055"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.900" acc_prob="0.000" e_score="0.857"/>
          <exon-intron don_prob="0.000" acc_prob="0.977" e_score="0.515"/>
          <exon-only e_score="0.650"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="112367" e_stop="112266" e_length="102"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.999">
            <gDNA_intron_boundary i_start="112265" i_stop="109478" i_length="2788"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="109477" e_stop="109051" e_length="427"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="109050" i_stop="108200" i_length="851"/>
          </intron>
          <exon e_serial="3" e_score="0.857">
            <gDNA_exon_boundary e_start="108199" e_stop="108193" e_length="7"/>
          </exon>
          <intron i_serial="3" don_prob="0.900" acc_prob="0.000">
            <gDNA_intron_boundary i_start="108192" i_stop="108041" i_length="152"/>
          </intron>
          <exon e_serial="4" e_score="0.515">
            <gDNA_exon_boundary e_start="108040" e_stop="107973" e_length="68"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.977">
            <gDNA_intron_boundary i_start="107972" i_stop="107075" i_length="898"/>
          </intron>
          <exon e_serial="5" e_score="0.650">
            <gDNA_exon_boundary e_start="107074" e_stop="107055" e_length="20"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112367" stop="112266"/>
              <exon start="109477" stop="109063"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284174" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112363" stop="112266"/>
              <exon start="109477" stop="109056"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312887" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112361" stop="112266"/>
              <exon start="109477" stop="109147"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E695322" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112351" stop="112266"/>
              <exon start="109477" stop="109051"/>
              <exon start="108199" stop="108193"/>
              <exon start="108040" stop="107973"/>
              <exon start="107074" stop="107055"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711140" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112347" stop="112266"/>
              <exon start="109477" stop="109067"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339278" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="7" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTACTCCGAGCGTCCATAGCAGGAAAACGAACAAAGGCAAGAGAACGGCGATGGCGTTGAACAACGGTTTGCGTTCATGTGCATCCCTTATCTCCAAAACTG : TGAAGAGAGAGTTCCACTCAACAGGCGTCAAGAGAATGGGAGGTCATGGACATGACGAACCTTTTTACATTCACGCAAAACACATGTACAACTTGGACAGGATGTCAAACCAGAAGCTGAAGATGACTCTTGGTGTCTGGTCTGCAGTCGCCATTGGTGTTATAGTCCCAGTTTATGCTGTCGTCTTCCAGCAAAAGAAAACTGCTTCTGGCTAGATCATCATGCTATTACGTCTCCACCACAATAATGCTGCCCTTGGAGCTTCCATGTATGAAGATGAACCTATTGAATTAGAGAGCATTAAATAGCTTTCAGTTTTGACTTAGCTTTACCCTGGTGGTTGCTTTTCTTGTTTCTGTTTTGGCACAACATTGGTATGCCTGGTTCATTAATAATATTTTCTTAACTGAAAACCATATTGGTTGAA : AAAAGAA : AAAAAAATATAAAACAAAAATTTATCACCTCAAACCCAATTAAATATGAATACGATAAACATTTCCAA : GATAAGGCAGACAACAAAAA</gDNA_template>
            <first_frame> L  L  R  A  S  I  A  G  K  R  T  K  A  R  E  R  R  W  R  *  T  T  V  C  V  H  V  H  P  L  S  P  K  L  :  *  R  E  S  S  T  Q  Q  A  S  R  E  W  E  V  M  D  M  T  N  L  F  T  F  T  Q  N  T  C  T  T  W  T  G  C  Q  T  R  S  *  R  *  L  L  V  S  G  L  Q  S  P  L  V  L  *  S  Q  F  M  L  S  S  S  S  K  R  K  L  L  L  A  R  S  S  C  Y  Y  V  S  T  T  I  M  L  P  L  E  L  P  C  M  K  M  N  L  L  N  *  R  A  L  N  S  F  Q  F  *  L  S  F  T  L  V  V  A  F  L  V  S  V  L  A  Q  H  W  Y  A  W  F  I  N  N  I  F  L  T  E  N  H  I  G  *   : K  K  K :   K  K  Y  K  T  K  I  Y  H  L  K  P  N  *  I  *  I  R  *  T  F  P   : R  *  G  R  Q  Q  K </first_frame>
            <second_frame>  Y  S  E  R  P  *  Q  E  N  E  Q  R  Q  E  N  G  D  G  V  E  Q  R  F  A  F  M  C  I  P  Y  L  Q  N  C :   E  E  R  V  P  L  N  R  R  Q  E  N  G  R  S  W  T  *  R  T  F  L  H  S  R  K  T  H  V  Q  L  G  Q  D  V  K  P  E  A  E  D  D  S  W  C  L  V  C  S  R  H  W  C  Y  S  P  S  L  C  C  R  L  P  A  K  E  N  C  F  W  L  D  H  H  A  I  T  S  P  P  Q  *  C  C  P  W  S  F  H  V  *  R  *  T  Y  *  I  R  E  H  *  I  A  F  S  F  D  L  A  L  P  W  W  L  L  F  L  F  L  F  W  H  N  I  G  M  P  G  S  L  I  I  F  S  *  L  K  T  I  L  V  E  :  K  R   : K  K  N  I  K  Q  K  F  I  T  S  N  P  I  K  Y  E  Y  D  K  H  F  Q  :  D  K  A  D  N  K   </second_frame>
            <third_frame>   T  P  S  V  H  S  R  K  T  N  K  G  K  R  T  A  M  A  L  N  N  G  L  R  S  C  A  S  L  I  S  K  T   : V  K  R  E  F  H  S  T  G  V  K  R  M  G  G  H  G  H  D  E  P  F  Y  I  H  A  K  H  M  Y  N  L  D  R  M  S  N  Q  K  L  K  M  T  L  G  V  W  S  A  V  A  I  G  V  I  V  P  V  Y  A  V  V  F  Q  Q  K  K  T  A  S  G  *  I  I  M  L  L  R  L  H  H  N  N  A  A  L  G  A  S  M  Y  E  D  E  P  I  E  L  E  S  I  K  *  L  S  V  L  T  *  L  Y  P  G  G  C  F  S  C  F  C  F  G  T  T  L  V  C  L  V  H  *  *  Y  F  L  N  *  K  P  Y  W  L  K :   K  E  :  K  K  I  *  N  K  N  L  S  P  Q  T  Q  L  N  M  N  T  I  N  I  S  K :   I  R  Q  T  T  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0132E21.2" strand="-"/>
                <serials PGL_serial="14" AGS_serial="7" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="112365" stop="112266"/>
                    <exon start="109477" stop="109263"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>312</number_coding_nucleotides>
                  <number_encoded_amino_acids>104</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TPSVHSRKTNKGKRTAMALNNGLRSCASLISKTVKREFHSTGVKRMGGHGHDEPFYIHAKHMYNLDRMSNQKLKMTLGVWSAVAIGVIVPVYAVVFQQKKTASG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="8">
          <exon_coordinates>
            <exon e_start="112367" e_stop="112266"/>
            <exon e_start="109477" e_stop="109051"/>
            <exon e_start="108040" e_stop="108021"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.998"/>
          <exon-only e_score="0.850"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="112367" e_stop="112266" e_length="102"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.999">
            <gDNA_intron_boundary i_start="112265" i_stop="109478" i_length="2788"/>
          </intron>
          <exon e_serial="2" e_score="0.998">
            <gDNA_exon_boundary e_start="109477" e_stop="109051" e_length="427"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="109050" i_stop="108041" i_length="1010"/>
          </intron>
          <exon e_serial="3" e_score="0.850">
            <gDNA_exon_boundary e_start="108040" e_stop="108021" e_length="20"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112367" stop="112266"/>
              <exon start="109477" stop="109051"/>
              <exon start="108040" stop="108021"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E696978" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112367" stop="112266"/>
              <exon start="109477" stop="109063"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284174" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112363" stop="112266"/>
              <exon start="109477" stop="109056"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312887" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112361" stop="112266"/>
              <exon start="109477" stop="109147"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E695322" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112347" stop="112266"/>
              <exon start="109477" stop="109067"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339278" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="8" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTACTCCGAGCGTCCATAGCAGGAAAACGAACAAAGGCAAGAGAACGGCGATGGCGTTGAACAACGGTTTGCGTTCATGTGCATCCCTTATCTCCAAAACTG : TGAAGAGAGAGTTCCACTCAACAGGCGTCAAGAGAATGGGAGGTCATGGACATGACGAACCTTTTTACATTCACGCAAAACACATGTACAACTTGGACAGGATGTCAAACCAGAAGCTGAAGATGACTCTTGGTGTCTGGTCTGCAGTCGCCATTGGTGTTATAGTCCCAGTTTATGCTGTCGTCTTCCAGCAAAAGAAAACTGCTTCTGGCTAGATCATCATGCTATTACGTCTCCACCACAATAATGCTGCCCTTGGAGCTTCCATGTATGAAGATGAACCTATTGAATTAGAGAGCATTAAATAGCTTTCAGTTTTGACTTAGCTTTACCCTGGTGGTTGCTTTTCTTGTTTCTGTTTTGGCACAACATTGGTATGCCTGGTTCATTAATAATATTTTCTTAACTGAAAACCATATTGGTTGAA : AAAAAAATATAAAACAAAAA</gDNA_template>
            <first_frame> L  L  R  A  S  I  A  G  K  R  T  K  A  R  E  R  R  W  R  *  T  T  V  C  V  H  V  H  P  L  S  P  K  L  :  *  R  E  S  S  T  Q  Q  A  S  R  E  W  E  V  M  D  M  T  N  L  F  T  F  T  Q  N  T  C  T  T  W  T  G  C  Q  T  R  S  *  R  *  L  L  V  S  G  L  Q  S  P  L  V  L  *  S  Q  F  M  L  S  S  S  S  K  R  K  L  L  L  A  R  S  S  C  Y  Y  V  S  T  T  I  M  L  P  L  E  L  P  C  M  K  M  N  L  L  N  *  R  A  L  N  S  F  Q  F  *  L  S  F  T  L  V  V  A  F  L  V  S  V  L  A  Q  H  W  Y  A  W  F  I  N  N  I  F  L  T  E  N  H  I  G  *   : K  K  N  I  K  Q  K </first_frame>
            <second_frame>  Y  S  E  R  P  *  Q  E  N  E  Q  R  Q  E  N  G  D  G  V  E  Q  R  F  A  F  M  C  I  P  Y  L  Q  N  C :   E  E  R  V  P  L  N  R  R  Q  E  N  G  R  S  W  T  *  R  T  F  L  H  S  R  K  T  H  V  Q  L  G  Q  D  V  K  P  E  A  E  D  D  S  W  C  L  V  C  S  R  H  W  C  Y  S  P  S  L  C  C  R  L  P  A  K  E  N  C  F  W  L  D  H  H  A  I  T  S  P  P  Q  *  C  C  P  W  S  F  H  V  *  R  *  T  Y  *  I  R  E  H  *  I  A  F  S  F  D  L  A  L  P  W  W  L  L  F  L  F  L  F  W  H  N  I  G  M  P  G  S  L  I  I  F  S  *  L  K  T  I  L  V  E  :  K  K  I  *  N  K   </second_frame>
            <third_frame>   T  P  S  V  H  S  R  K  T  N  K  G  K  R  T  A  M  A  L  N  N  G  L  R  S  C  A  S  L  I  S  K  T   : V  K  R  E  F  H  S  T  G  V  K  R  M  G  G  H  G  H  D  E  P  F  Y  I  H  A  K  H  M  Y  N  L  D  R  M  S  N  Q  K  L  K  M  T  L  G  V  W  S  A  V  A  I  G  V  I  V  P  V  Y  A  V  V  F  Q  Q  K  K  T  A  S  G  *  I  I  M  L  L  R  L  H  H  N  N  A  A  L  G  A  S  M  Y  E  D  E  P  I  E  L  E  S  I  K  *  L  S  V  L  T  *  L  Y  P  G  G  C  F  S  C  F  C  F  G  T  T  L  V  C  L  V  H  *  *  Y  F  L  N  *  K  P  Y  W  L  K :   K  K  Y  K  T  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0132E21.2" strand="-"/>
                <serials PGL_serial="14" AGS_serial="8" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="112365" stop="112266"/>
                    <exon start="109477" stop="109263"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>312</number_coding_nucleotides>
                  <number_encoded_amino_acids>104</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TPSVHSRKTNKGKRTAMALNNGLRSCASLISKTVKREFHSTGVKRMGGHGHDEPFYIHAKHMYNLDRMSNQKLKMTLGVWSAVAIGVIVPVYAVVFQQKKTASG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="9">
          <exon_coordinates>
            <exon e_start="109827" e_stop="109015"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="109827" e_stop="109015" e_length="813"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109827" stop="109299"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240380" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109417" stop="109015"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349432" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109413" stop="109050"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282226" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="9" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAAGCATACTTCCATCAGTTTGACAATCTTTTCATTGGAACAGTGTGGCAATTGAAACGTGTTTTTCTACGGCCTGCTTGAATGACTTCGAATTATTTATTATGCCAACTTCTTTCTTTATGCACAAGTTCAAACGTCTGTCTTAACCGTTACATTTCAAACATTCTTTGATACTTGTTTAGTTAATTATACATGTTTTGAAACTTCCATTTCTCTCATATTTCATTTCTAATTGTCTTTCATCTTACCGTTTCTTTATGAAAAGTTTATTTCAATCAAATTTGGATGCTGTTGTTCATGCTTTTTATAAGTCTGACCTTACTGATAATTGATATTTATTGTTTGGTCAGTGAAGAGAGAGTTCCACTCAACAGGCGTCAAGAGAATGGGAGGTCATGGACATGACGAACCTTTTTACATTCACGCAAAACACATGTACAACTTGGACAGGATGTCAAACCAGAAGCTGAAGATGACTCTTGGTGTCTGGTCTGCAGTCGCCATTGGTGTTATAGTCCCAGTTTATGCTGTCGTCTTCCAGCAAAAGAAAACTGCTTCTGGCTAGATCATCATGCTATTACGTCTCCACCACAATAATGCTGCCCTTGGAGCTTCCATGTATGAAGATGAACCTATTGAATTAGAGAGCATTAAATAGCTTTCAGTTTTGACTTAGCTTTACCCTGGTGGTTGCTTTTCTTGTTTCTGTTTTGGCACAACATTGGTATGCCTGGTTCATTAATAATATTTTCTTAACTGAAAACCATATTGGTTGAACATGTGTCTGATTTAATATCCATTTTCTGACTGGCA</gDNA_template>
            <first_frame> Q  A  Y  F  H  Q  F  D  N  L  F  I  G  T  V  W  Q  L  K  R  V  F  L  R  P  A  *  M  T  S  N  Y  L  L  C  Q  L  L  S  L  C  T  S  S  N  V  C  L  N  R  Y  I  S  N  I  L  *  Y  L  F  S  *  L  Y  M  F  *  N  F  H  F  S  H  I  S  F  L  I  V  F  H  L  T  V  S  L  *  K  V  Y  F  N  Q  I  W  M  L  L  F  M  L  F  I  S  L  T  L  L  I  I  D  I  Y  C  L  V  S  E  E  R  V  P  L  N  R  R  Q  E  N  G  R  S  W  T  *  R  T  F  L  H  S  R  K  T  H  V  Q  L  G  Q  D  V  K  P  E  A  E  D  D  S  W  C  L  V  C  S  R  H  W  C  Y  S  P  S  L  C  C  R  L  P  A  K  E  N  C  F  W  L  D  H  H  A  I  T  S  P  P  Q  *  C  C  P  W  S  F  H  V  *  R  *  T  Y  *  I  R  E  H  *  I  A  F  S  F  D  L  A  L  P  W  W  L  L  F  L  F  L  F  W  H  N  I  G  M  P  G  S  L  I  I  F  S  *  L  K  T  I  L  V  E  H  V  S  D  L  I  S  I  F  *  L  A </first_frame>
            <second_frame>  K  H  T  S  I  S  L  T  I  F  S  L  E  Q  C  G  N  *  N  V  F  F  Y  G  L  L  E  *  L  R  I  I  Y  Y  A  N  F  F  L  Y  A  Q  V  Q  T  S  V  L  T  V  T  F  Q  T  F  F  D  T  C  L  V  N  Y  T  C  F  E  T  S  I  S  L  I  F  H  F  *  L  S  F  I  L  P  F  L  Y  E  K  F  I  S  I  K  F  G  C  C  C  S  C  F  L  *  V  *  P  Y  *  *  L  I  F  I  V  W  S  V  K  R  E  F  H  S  T  G  V  K  R  M  G  G  H  G  H  D  E  P  F  Y  I  H  A  K  H  M  Y  N  L  D  R  M  S  N  Q  K  L  K  M  T  L  G  V  W  S  A  V  A  I  G  V  I  V  P  V  Y  A  V  V  F  Q  Q  K  K  T  A  S  G  *  I  I  M  L  L  R  L  H  H  N  N  A  A  L  G  A  S  M  Y  E  D  E  P  I  E  L  E  S  I  K  *  L  S  V  L  T  *  L  Y  P  G  G  C  F  S  C  F  C  F  G  T  T  L  V  C  L  V  H  *  *  Y  F  L  N  *  K  P  Y  W  L  N  M  C  L  I  *  Y  P  F  S  D  W   </second_frame>
            <third_frame>   S  I  L  P  S  V  *  Q  S  F  H  W  N  S  V  A  I  E  T  C  F  S  T  A  C  L  N  D  F  E  L  F  I  M  P  T  S  F  F  M  H  K  F  K  R  L  S  *  P  L  H  F  K  H  S  L  I  L  V  *  L  I  I  H  V  L  K  L  P  F  L  S  Y  F  I  S  N  C  L  S  S  Y  R  F  F  M  K  S  L  F  Q  S  N  L  D  A  V  V  H  A  F  Y  K  S  D  L  T  D  N  *  Y  L  L  F  G  Q  *  R  E  S  S  T  Q  Q  A  S  R  E  W  E  V  M  D  M  T  N  L  F  T  F  T  Q  N  T  C  T  T  W  T  G  C  Q  T  R  S  *  R  *  L  L  V  S  G  L  Q  S  P  L  V  L  *  S  Q  F  M  L  S  S  S  S  K  R  K  L  L  L  A  R  S  S  C  Y  Y  V  S  T  T  I  M  L  P  L  E  L  P  C  M  K  M  N  L  L  N  *  R  A  L  N  S  F  Q  F  *  L  S  F  T  L  V  V  A  F  L  V  S  V  L  A  Q  H  W  Y  A  W  F  I  N  N  I  F  L  T  E  N  H  I  G  *  T  C  V  *  F  N  I  H  F  L  T  G  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0132E21.2" strand="-"/>
                <serials PGL_serial="14" AGS_serial="9" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="109499" stop="109263"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>234</number_coding_nucleotides>
                  <number_encoded_amino_acids>78</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LIFIVWSVKREFHSTGVKRMGGHGHDEPFYIHAKHMYNLDRMSNQKLKMTLGVWSAVAIGVIVPVYAVVFQQKKTASG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="+" PGL_start="108008" PGL_stop="109433"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="108024" e_stop="108040"/>
            <exon e_start="108982" e_stop="109360"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.824"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.824">
            <gDNA_exon_boundary e_start="108024" e_stop="108040" e_length="17"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="108041" i_stop="108981" i_length="941"/>
          </intron>
          <exon e_serial="2" e_score="0.995">
            <gDNA_exon_boundary e_start="108982" e_stop="109360" e_length="379"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108024" stop="108040"/>
              <exon start="108982" stop="109360"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229169" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108024" stop="108040"/>
              <exon start="108982" stop="109320"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228689" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTGTTTTATATTTTTTT : GAAGAACATTCTCTTTGAATTGATAGGAGTAATTGCCAGTCAGAAAATGGATATTAAATCAGACACATGTTCAACCAATATGGTTTTCAGTTAAGAAAATATTATTAATGAACCAGGCATACCAATGTTGTGCCAAAACAGAAACAAGAAAAGCAACCACCAGGGTAAAGCTAAGTCAAAACTGAAAGCTATTTAATGCTCTCTAATTCAATAGGTTCATCTTCATACATGGAAGCTCCAAGGGCAGCATTATTGTGGTGGAGACGTAATAGCATGATGATCTAGCCAGAAGCAGTTTTCTTTTGCTGGAAGACGACAGCATAAACTGGGACTATAACACCAATGGCGACTGCAGACCAGACACCAAGAGTCATCTTCA</gDNA_template>
            <first_frame> L  F  Y  I  F  L :   K  N  I  L  F  E  L  I  G  V  I  A  S  Q  K  M  D  I  K  S  D  T  C  S  T  N  M  V  F  S  *  E  N  I  I  N  E  P  G  I  P  M  L  C  Q  N  R  N  K  K  S  N  H  Q  G  K  A  K  S  K  L  K  A  I  *  C  S  L  I  Q  *  V  H  L  H  T  W  K  L  Q  G  Q  H  Y  C  G  G  D  V  I  A  *  *  S  S  Q  K  Q  F  S  F  A  G  R  R  Q  H  K  L  G  L  *  H  Q  W  R  L  Q  T  R  H  Q  E  S  S  S </first_frame>
            <second_frame>  C  F  I  F  F   : *  R  T  F  S  L  N  *  *  E  *  L  P  V  R  K  W  I  L  N  Q  T  H  V  Q  P  I  W  F  S  V  K  K  I  L  L  M  N  Q  A  Y  Q  C  C  A  K  T  E  T  R  K  A  T  T  R  V  K  L  S  Q  N  *  K  L  F  N  A  L  *  F  N  R  F  I  F  I  H  G  S  S  K  G  S  I  I  V  V  E  T  *  *  H  D  D  L  A  R  S  S  F  L  L  L  E  D  D  S  I  N  W  D  Y  N  T  N  G  D  C  R  P  D  T  K  S  H  L   </second_frame>
            <third_frame>   V  L  Y  F  F  :  E  E  H  S  L  *  I  D  R  S  N  C  Q  S  E  N  G  Y  *  I  R  H  M  F  N  Q  Y  G  F  Q  L  R  K  Y  Y  *  *  T  R  H  T  N  V  V  P  K  Q  K  Q  E  K  Q  P  P  G  *  S  *  V  K  T  E  S  Y  L  M  L  S  N  S  I  G  S  S  S  Y  M  E  A  P  R  A  A  L  L  W  W  R  R  N  S  M  M  I  *  P  E  A  V  F  F  C  W  K  T  T  A  *  T  G  T  I  T  P  M  A  T  A  D  Q  T  P  R  V  I  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06SLm0132E21.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="108008" e_stop="108040"/>
            <exon e_start="108993" e_stop="109433"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.697"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.697">
            <gDNA_exon_boundary e_start="108008" e_stop="108040" e_length="33"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="108041" i_stop="108992" i_length="952"/>
          </intron>
          <exon e_serial="2" e_score="0.995">
            <gDNA_exon_boundary e_start="108993" e_stop="109433" e_length="441"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108008" stop="108040"/>
              <exon start="108993" stop="109433"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357758" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTGAGGTGATAAATTTTTGTTTTATATTTTTTT : TCTTTGAATTGATAGGAGTAATTGCCAGTCAGAAAATGGATATTAAATCAGACACATGTTCAACCAATATGGTTTTCAGTTAAGAAAATATTATTAATGAACCAGGCATACCAATGTTGTGCCAAAACAGAAACAAGAAAAGCAACCACCAGGGTAAAGCTAAGTCAAAACTGAAAGCTATTTAATGCTCTCTAATTCAATAGGTTCATCTTCATACATGGAAGCTCCAAGGGCAGCATTATTGTGGTGGAGACGTAATAGCATGATGATCTAGCCAGAAGCAGTTTTCTTTTGCTGGAAGACGACAGCATAAACTGGGACTATAACACCAATGGCGACTGCAGACCAGACACCAAGAGTCATCTTCAGCTTCTGGTTTGACATCCTGTCCAAGTTGTACATGTGTTTTGCGTGAATGTAAAAAGGTTCGTCATGTCCATG</gDNA_template>
            <first_frame> L  R  *  *  I  F  V  L  Y  F  F  :  S  L  N  *  *  E  *  L  P  V  R  K  W  I  L  N  Q  T  H  V  Q  P  I  W  F  S  V  K  K  I  L  L  M  N  Q  A  Y  Q  C  C  A  K  T  E  T  R  K  A  T  T  R  V  K  L  S  Q  N  *  K  L  F  N  A  L  *  F  N  R  F  I  F  I  H  G  S  S  K  G  S  I  I  V  V  E  T  *  *  H  D  D  L  A  R  S  S  F  L  L  L  E  D  D  S  I  N  W  D  Y  N  T  N  G  D  C  R  P  D  T  K  S  H  L  Q  L  L  V  *  H  P  V  Q  V  V  H  V  F  C  V  N  V  K  R  F  V  M  S  M </first_frame>
            <second_frame>  *  G  D  K  F  L  F  Y  I  F  F :   L  *  I  D  R  S  N  C  Q  S  E  N  G  Y  *  I  R  H  M  F  N  Q  Y  G  F  Q  L  R  K  Y  Y  *  *  T  R  H  T  N  V  V  P  K  Q  K  Q  E  K  Q  P  P  G  *  S  *  V  K  T  E  S  Y  L  M  L  S  N  S  I  G  S  S  S  Y  M  E  A  P  R  A  A  L  L  W  W  R  R  N  S  M  M  I  *  P  E  A  V  F  F  C  W  K  T  T  A  *  T  G  T  I  T  P  M  A  T  A  D  Q  T  P  R  V  I  F  S  F  W  F  D  I  L  S  K  L  Y  M  C  F  A  *  M  *  K  G  S  S  C  P   </second_frame>
            <third_frame>   E  V  I  N  F  C  F  I  F  F   : F  F  E  L  I  G  V  I  A  S  Q  K  M  D  I  K  S  D  T  C  S  T  N  M  V  F  S  *  E  N  I  I  N  E  P  G  I  P  M  L  C  Q  N  R  N  K  K  S  N  H  Q  G  K  A  K  S  K  L  K  A  I  *  C  S  L  I  Q  *  V  H  L  H  T  W  K  L  Q  G  Q  H  Y  C  G  G  D  V  I  A  *  *  S  S  Q  K  Q  F  S  F  A  G  R  R  Q  H  K  L  G  L  *  H  Q  W  R  L  Q  T  R  H  Q  E  S  S  S  A  S  G  L  T  S  C  P  S  C  T  C  V  L  R  E  C  K  K  V  R  H  V  H  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06SLm0132E21.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="-" PGL_start="113414" PGL_stop="112679"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="113414" e_stop="112679"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="113414" e_stop="112679" e_length="736"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113414" stop="112709"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689197" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113413" stop="112920"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323368" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113342" stop="112733"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737144" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113315" stop="112679"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351581" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113315" stop="112689"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353593" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113315" stop="112694"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353471" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAGAATCATCAATAATGAGAAAAGAGATCCAGGATCTAAGAACAAATGCTAGAATATTTCAGCTTAGCAAGTGTACTACTTGCACATTCACCCTAGACCTTCCTGCTGTCCACTTCATGTGTATGCACTCATTTCATCAGCGATGTCTTGGCGACAATGAGAAAGAGTGCCCCGAGTGTGCTCCCGAGTACAGAGCCGTTCTGGAAACAAAGAGAAGCTTGGAACAAAGTTCCAAAAACCCAGACCAGTTCTTCCAACAAGTCAAGAGCTCAAAGGATGGATTTTCCGTAATTGCTGATTATTTTGGCAAGGGGATTATCAGCAAAACCAGCAACGGGCCTTCTGAAGCTAATGGATCAAACAGTGCTTCTTCCGGCAACGATTTCTAGCGTTTTGTCATCACAGTTTTTGAGTACTAAAGTTGTTGAGATCTCTCCGGCTATAAACAAAGTTCATTGAGCTACATGTTCAGAAGAATGTCATCCATCCTGTTTGGTGTTTATTAGGCCACTTGTTTCTTTTAAGGTTATTGTTGAGCTGCAGTTCTACAACTCTCTGTGAACAAAATAAAATTATGTGCAGAAGAACAATCTGATTGATTTGGATAAAATCTGCACAACAAAATGTATTTTGCTGACATTGATTACAAGTGGGATTAGTTGGTATTTTAACAACATATTATTAGTGTACTTAATAATTAATAATGCATCAGCAGCTAATTATTTATAGGGAAATT</gDNA_template>
            <first_frame> K  N  H  Q  *  *  E  K  R  S  R  I  *  E  Q  M  L  E  Y  F  S  L  A  S  V  L  L  A  H  S  P  *  T  F  L  L  S  T  S  C  V  C  T  H  F  I  S  D  V  L  A  T  M  R  K  S  A  P  S  V  L  P  S  T  E  P  F  W  K  Q  R  E  A  W  N  K  V  P  K  T  Q  T  S  S  S  N  K  S  R  A  Q  R  M  D  F  P  *  L  L  I  I  L  A  R  G  L  S  A  K  P  A  T  G  L  L  K  L  M  D  Q  T  V  L  L  P  A  T  I  S  S  V  L  S  S  Q  F  L  S  T  K  V  V  E  I  S  P  A  I  N  K  V  H  *  A  T  C  S  E  E  C  H  P  S  C  L  V  F  I  R  P  L  V  S  F  K  V  I  V  E  L  Q  F  Y  N  S  L  *  T  K  *  N  Y  V  Q  K  N  N  L  I  D  L  D  K  I  C  T  T  K  C  I  L  L  T  L  I  T  S  G  I  S  W  Y  F  N  N  I  L  L  V  Y  L  I  I  N  N  A  S  A  A  N  Y  L  *  G  N  </first_frame>
            <second_frame>  R  I  I  N  N  E  K  R  D  P  G  S  K  N  K  C  *  N  I  S  A  *  Q  V  Y  Y  L  H  I  H  P  R  P  S  C  C  P  L  H  V  Y  A  L  I  S  S  A  M  S  W  R  Q  *  E  R  V  P  R  V  C  S  R  V  Q  S  R  S  G  N  K  E  K  L  G  T  K  F  Q  K  P  R  P  V  L  P  T  S  Q  E  L  K  G  W  I  F  R  N  C  *  L  F  W  Q  G  D  Y  Q  Q  N  Q  Q  R  A  F  *  S  *  W  I  K  Q  C  F  F  R  Q  R  F  L  A  F  C  H  H  S  F  *  V  L  K  L  L  R  S  L  R  L  *  T  K  F  I  E  L  H  V  Q  K  N  V  I  H  P  V  W  C  L  L  G  H  L  F  L  L  R  L  L  L  S  C  S  S  T  T  L  C  E  Q  N  K  I  M  C  R  R  T  I  *  L  I  W  I  K  S  A  Q  Q  N  V  F  C  *  H  *  L  Q  V  G  L  V  G  I  L  T  T  Y  Y  *  C  T  *  *  L  I  M  H  Q  Q  L  I  I  Y  R  E  I </second_frame>
            <third_frame>   E  S  S  I  M  R  K  E  I  Q  D  L  R  T  N  A  R  I  F  Q  L  S  K  C  T  T  C  T  F  T  L  D  L  P  A  V  H  F  M  C  M  H  S  F  H  Q  R  C  L  G  D  N  E  K  E  C  P  E  C  A  P  E  Y  R  A  V  L  E  T  K  R  S  L  E  Q  S  S  K  N  P  D  Q  F  F  Q  Q  V  K  S  S  K  D  G  F  S  V  I  A  D  Y  F  G  K  G  I  I  S  K  T  S  N  G  P  S  E  A  N  G  S  N  S  A  S  S  G  N  D  F  *  R  F  V  I  T  V  F  E  Y  *  S  C  *  D  L  S  G  Y  K  Q  S  S  L  S  Y  M  F  R  R  M  S  S  I  L  F  G  V  Y  *  A  T  C  F  F  *  G  Y  C  *  A  A  V  L  Q  L  S  V  N  K  I  K  L  C  A  E  E  Q  S  D  *  F  G  *  N  L  H  N  K  M  Y  F  A  D  I  D  Y  K  W  D  *  L  V  F  *  Q  H  I  I  S  V  L  N  N  *  *  C  I  S  S  *  L  F  I  G  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0132E21.2" strand="-"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="113412" stop="113026"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>384</number_coding_nucleotides>
                  <number_encoded_amino_acids>128</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ESSIMRKEIQDLRTNARIFQLSKCTTCTFTLDLPAVHFMCMHSFHQRCLGDNEKECPECAPEYRAVLETKRSLEQSSKNPDQFFQQVKSSKDGFSVIADYFGKGIISKTSNGPSEANGSNSASSGNDF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="-" PGL_start="115966" PGL_stop="115454"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="115966" e_stop="115454"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="115966" e_stop="115454" e_length="513"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115966" stop="115454"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271427" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115966" stop="115542"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272243" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115966" stop="115611"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271267" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATGATCTAGCACATAAATCTTCAAAATCAGTATCTAATGGGAGGGCTATATCGAACAAGAAAGACGTAAATGATGAGAAAGGTCGTCAAGAGCGACGTCGGAAGGGGCTGACCTTGCTTAAGAGTGCATGGCCTTCTGAACTAGAACAACCACTATATGACGTTGATCTTGTCATAATTTTATGCGAGATGAATGACTTTAAAGAAGGATTGTTGTTTCTGTATGAGAAGATGAAACTTTTCAAAGAAGTTATTGCATGCTACATGCAGGTACATGATCATGAAGGTTTGATTTCATGCTGCAAGAGATTGGGTGATTTGGGTAAGGGGGGTGACCCTTCTCTTTGGGCAGATTTGTTGAAGTATTTTGGTGAACTTGGAGAAGACTGCTCAAAAGAAGTCAAAGAAATCCTGACATACATTGAGAGGGGTGATATCTTGCCTCCCATTGTGGTTCTTCAGACACTTGCTAAAAACCCGTGCCTCTCTCTCTCAGTTATCAAAGATTACATA</gDNA_template>
            <first_frame> N  D  L  A  H  K  S  S  K  S  V  S  N  G  R  A  I  S  N  K  K  D  V  N  D  E  K  G  R  Q  E  R  R  R  K  G  L  T  L  L  K  S  A  W  P  S  E  L  E  Q  P  L  Y  D  V  D  L  V  I  I  L  C  E  M  N  D  F  K  E  G  L  L  F  L  Y  E  K  M  K  L  F  K  E  V  I  A  C  Y  M  Q  V  H  D  H  E  G  L  I  S  C  C  K  R  L  G  D  L  G  K  G  G  D  P  S  L  W  A  D  L  L  K  Y  F  G  E  L  G  E  D  C  S  K  E  V  K  E  I  L  T  Y  I  E  R  G  D  I  L  P  P  I  V  V  L  Q  T  L  A  K  N  P  C  L  S  L  S  V  I  K  D  Y  I </first_frame>
            <second_frame>  M  I  *  H  I  N  L  Q  N  Q  Y  L  M  G  G  L  Y  R  T  R  K  T  *  M  M  R  K  V  V  K  S  D  V  G  R  G  *  P  C  L  R  V  H  G  L  L  N  *  N  N  H  Y  M  T  L  I  L  S  *  F  Y  A  R  *  M  T  L  K  K  D  C  C  F  C  M  R  R  *  N  F  S  K  K  L  L  H  A  T  C  R  Y  M  I  M  K  V  *  F  H  A  A  R  D  W  V  I  W  V  R  G  V  T  L  L  F  G  Q  I  C  *  S  I  L  V  N  L  E  K  T  A  Q  K  K  S  K  K  S  *  H  T  L  R  G  V  I  S  C  L  P  L  W  F  F  R  H  L  L  K  T  R  A  S  L  S  Q  L  S  K  I  T   </second_frame>
            <third_frame>   *  S  S  T  *  I  F  K  I  S  I  *  W  E  G  Y  I  E  Q  E  R  R  K  *  *  E  R  S  S  R  A  T  S  E  G  A  D  L  A  *  E  C  M  A  F  *  T  R  T  T  T  I  *  R  *  S  C  H  N  F  M  R  D  E  *  L  *  R  R  I  V  V  S  V  *  E  D  E  T  F  Q  R  S  Y  C  M  L  H  A  G  T  *  S  *  R  F  D  F  M  L  Q  E  I  G  *  F  G  *  G  G  *  P  F  S  L  G  R  F  V  E  V  F  W  *  T  W  R  R  L  L  K  R  S  Q  R  N  P  D  I  H  *  E  G  *  Y  L  A  S  H  C  G  S  S  D  T  C  *  K  P  V  P  L  S  L  S  Y  Q  R  L  H  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0132E21.2" strand="-"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="115966" stop="115454"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>513</number_coding_nucleotides>
                  <number_encoded_amino_acids>171</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NDLAHKSSKSVSNGRAISNKKDVNDEKGRQERRRKGLTLLKSAWPSELEQPLYDVDLVIILCEMNDFKEGLLFLYEKMKLFKEVIACYMQVHDHEGLISCCKRLGDLGKGGDPSLWADLLKYFGELGEDCSKEVKEILTYIERGDILPPIVVLQTLAKNPCLSLSVIKDYI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="+" PGL_start="133577" PGL_stop="134134"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="133577" e_stop="134134"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.932"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.932">
            <gDNA_exon_boundary e_start="133577" e_stop="134134" e_length="558"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="133577" stop="134134"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243101" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAAATTACATATTCTCAACAACAACACTTTAACAAATTACATACCCTCAACAACAATACTTCAACAAATTACATATCCGCAATAACAAGCTCAATATTGATCTATCACAAGTTCCACAGGAGGCAATCAGAAGATCAGCAAAACACGATATCAAGTTCACTAATAATAAGTATGTGCAATGCAATGGAATGCAATGTCAAGTATAATGATGCATGTCTGACCTAGTGATACACACCCGCTGTCTCTCAGTCCGGGACCCATGGGGGACATATCTGTCCATGCATCTGTCACGGCGCACGACACGACCCTCGATAATAGTAACCATCGCGGCACGCGATACGTCCCTCGAAATATAGTATCCATCGCGGCGCGCGATACGTCCCTCGAAATGGTACATCCTCTTAAGTACCCATTCTTTCTCAATGCACATAACACTTGTCCCAACCAATGCCTCAGAATAATGTAGATGACAAGTTCACACATATAATGAGGAGATGACCATTTCCATAACATCACACAGTTCACAACCACACAAACATGAAGTTACATCAACAATGA</gDNA_template>
            <first_frame> Q  I  T  Y  S  Q  Q  Q  H  F  N  K  L  H  T  L  N  N  N  T  S  T  N  Y  I  S  A  I  T  S  S  I  L  I  Y  H  K  F  H  R  R  Q  S  E  D  Q  Q  N  T  I  S  S  S  L  I  I  S  M  C  N  A  M  E  C  N  V  K  Y  N  D  A  C  L  T  *  *  Y  T  P  A  V  S  Q  S  G  T  H  G  G  H  I  C  P  C  I  C  H  G  A  R  H  D  P  R  *  *  *  P  S  R  H  A  I  R  P  S  K  Y  S  I  H  R  G  A  R  Y  V  P  R  N  G  T  S  S  *  V  P  I  L  S  Q  C  T  *  H  L  S  Q  P  M  P  Q  N  N  V  D  D  K  F  T  H  I  M  R  R  *  P  F  P  *  H  H  T  V  H  N  H  T  N  M  K  L  H  Q  Q  * </first_frame>
            <second_frame>  K  L  H  I  L  N  N  N  T  L  T  N  Y  I  P  S  T  T  I  L  Q  Q  I  T  Y  P  Q  *  Q  A  Q  Y  *  S  I  T  S  S  T  G  G  N  Q  K  I  S  K  T  R  Y  Q  V  H  *  *  *  V  C  A  M  Q  W  N  A  M  S  S  I  M  M  H  V  *  P  S  D  T  H  P  L  S  L  S  P  G  P  M  G  D  I  S  V  H  A  S  V  T  A  H  D  T  T  L  D  N  S  N  H  R  G  T  R  Y  V  P  R  N  I  V  S  I  A  A  R  D  T  S  L  E  M  V  H  P  L  K  Y  P  F  F  L  N  A  H  N  T  C  P  N  Q  C  L  R  I  M  *  M  T  S  S  H  I  *  *  G  D  D  H  F  H  N  I  T  Q  F  T  T  T  Q  T  *  S  Y  I  N  N   </second_frame>
            <third_frame>   N  Y  I  F  S  T  T  T  L  *  Q  I  T  Y  P  Q  Q  Q  Y  F  N  K  L  H  I  R  N  N  K  L  N  I  D  L  S  Q  V  P  Q  E  A  I  R  R  S  A  K  H  D  I  K  F  T  N  N  K  Y  V  Q  C  N  G  M  Q  C  Q  V  *  *  C  M  S  D  L  V  I  H  T  R  C  L  S  V  R  D  P  W  G  T  Y  L  S  M  H  L  S  R  R  T  T  R  P  S  I  I  V  T  I  A  A  R  D  T  S  L  E  I  *  Y  P  S  R  R  A  I  R  P  S  K  W  Y  I  L  L  S  T  H  S  F  S  M  H  I  T  L  V  P  T  N  A  S  E  *  C  R  *  Q  V  H  T  Y  N  E  E  M  T  I  S  I  T  S  H  S  S  Q  P  H  K  H  E  V  T  S  T  M  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0132E21.2" strand="+"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="133797" stop="134042"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>243</number_coding_nucleotides>
                  <number_encoded_amino_acids>81</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PSDTHPLSLSPGPMGDISVHASVTAHDTTLDNSNHRGTRYVPRNIVSIAARDTSLEMVHPLKYPFFLNAHNTCPNQCLRIM*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0132E21.2" strand="+"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="133577" stop="133801"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QITYSQQQHFNKLHTLNNNTSTNYISAITSSILIYHKFHRRQSEDQQNTISSSLIISMCNAMECNVKYNDACLT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 214 chains have been computed
$ 
$ memory statistics:
$ 918736 bytes spliced alignments in total
$ 160 spliced alignments have been stored
$ 5742 bytes was the average size of a spliced alignment
$ 31136 bytes predicted gene locations in total
$ 18 predicted gene locations have been stored
$ 1729 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 243 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-16 14:38:08
-->
