FGENESH 2.4 Prediction of potential genes in Tomato genomic DNA Time : Thu Dec 13 17:30:09 2007 Seq name: C06HBa0302A23.1 AC211072.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0302A23 sequenced_by:cbsg [organism=Solanum lycopersicum] Length of sequence: 73231 Number of predicted genes 20 in +chain 15 in -chain 5 Number of predicted exons 55 in +chain 41 in -chain 14 Positions of predicted genes and exons: Variant 1 from 1, Score:676.900684 G Str Feature Start End Score ORF Len 1 + 1 CDSf 473 - 485 3.85 473 - 484 12 1 + 2 CDSl 718 - 788 0.09 720 - 788 69 1 + PolA 1638 1.61 2 + 1 CDSf 6447 - 6663 29.54 6447 - 6662 216 2 + 2 CDSl 6745 - 6893 12.85 6747 - 6893 147 2 + PolA 7067 1.61 3 - PolA 7219 -4.99 3 - 1 CDSl 7228 - 7364 15.85 7228 - 7362 135 3 - 2 CDSi 7464 - 7539 8.40 7465 - 7539 75 3 - 3 CDSf 7648 - 7656 -0.66 7648 - 7656 9 4 - PolA 13336 -0.59 4 - 1 CDSl 13751 - 13938 7.88 13751 - 13936 186 4 - 2 CDSf 14714 - 14735 -0.11 14715 - 14735 21 5 + 1 CDSf 24571 - 24699 14.06 24571 - 24699 129 5 + 2 CDSi 24779 - 24834 2.81 24779 - 24832 54 5 + 3 CDSi 24910 - 25024 19.33 24911 - 25024 114 5 + 4 CDSi 25097 - 25210 10.31 25097 - 25210 114 5 + 5 CDSi 25287 - 25474 24.19 25287 - 25472 186 5 + 6 CDSi 25537 - 25605 2.55 25538 - 25603 66 5 + 7 CDSi 25685 - 25844 10.03 25686 - 25844 159 5 + 8 CDSl 26062 - 26166 1.58 26062 - 26166 105 5 + PolA 26464 1.61 6 + 1 CDSf 26736 - 26786 5.90 26736 - 26786 51 6 + 2 CDSl 28727 - 28915 5.29 28727 - 28915 189 6 + PolA 28972 -0.59 7 + 1 CDSo 29278 - 29529 18.75 29278 - 29529 252 7 + PolA 29598 -0.59 8 + 1 CDSf 29782 - 29871 8.39 29782 - 29871 90 8 + 2 CDSl 30148 - 30411 11.18 30148 - 30411 264 8 + PolA 30432 -3.59 9 + 1 CDSf 30845 - 31076 17.52 30845 - 31075 231 9 + 2 CDSi 31665 - 31743 7.35 31667 - 31741 75 9 + 3 CDSl 32028 - 32196 5.83 32029 - 32196 168 9 + PolA 32840 1.61 10 + 1 CDSf 33050 - 33199 16.26 33050 - 33199 150 10 + 2 CDSl 33299 - 33499 23.44 33299 - 33499 201 10 + PolA 34234 1.61 11 + 1 CDSf 34559 - 34670 9.88 34559 - 34669 111 11 + 2 CDSi 36272 - 36363 8.01 36274 - 36363 90 11 + 3 CDSi 37027 - 37065 4.45 37027 - 37065 39 11 + 4 CDSl 37221 - 37406 12.97 37221 - 37406 186 11 + PolA 37859 1.61 12 - PolA 37896 1.61 12 - 1 CDSl 37962 - 38020 7.76 37962 - 38018 57 12 - 2 CDSi 38130 - 38276 30.14 38131 - 38274 144 12 - 3 CDSf 39189 - 39543 34.40 39190 - 39543 354 13 + 1 CDSf 45915 - 45985 1.71 45915 - 45983 69 13 + 2 CDSi 46831 - 46955 -4.83 46832 - 46954 123 13 + 3 CDSl 47320 - 47516 24.38 47322 - 47516 195 13 + PolA 48364 1.61 14 + 1 CDSf 58795 - 59133 37.17 58795 - 59133 339 14 + 2 CDSl 59955 - 60029 2.13 59955 - 60029 75 14 + PolA 60041 1.61 15 + 1 CDSf 60107 - 60781 49.23 60107 - 60781 675 15 + 2 CDSl 60897 - 61046 17.91 60897 - 61046 150 15 + PolA 61153 -3.59 16 + 1 CDSf 61178 - 61396 -1.83 61178 - 61396 219 16 + 2 CDSi 61453 - 61530 14.13 61453 - 61530 78 16 + 3 CDSl 61618 - 61704 14.08 61618 - 61704 87 16 + PolA 61845 -0.59 17 + 1 CDSf 62130 - 62655 48.98 62130 - 62654 525 17 + 2 CDSi 62741 - 62876 13.36 62743 - 62874 132 17 + 3 CDSl 62954 - 63068 7.90 62955 - 63068 114 17 + PolA 63293 1.61 18 + 1 CDSf 63330 - 63691 25.82 63330 - 63689 360 18 + 2 CDSl 63735 - 63867 -4.90 63736 - 63867 132 18 + PolA 64176 1.61 19 - PolA 64961 1.61 19 - 1 CDSl 65298 - 65741 16.98 65298 - 65741 444 19 - 2 CDSf 65849 - 66166 32.53 65849 - 66166 318 20 - PolA 66673 -0.59 20 - 1 CDSl 66755 - 66924 8.20 66755 - 66922 168 20 - 2 CDSi 70010 - 70466 44.38 70011 - 70466 456 20 - 3 CDSi 71367 - 71457 4.13 71367 - 71456 90 20 - 4 CDSf 71650 - 71687 -2.98 71652 - 71687 36 Predicted protein(s): >FGENESH: 1 2 exon (s) 473 - 788 27 aa, chain + MTDEGVDLDRDGLDKEKDYIFEKQTLL >FGENESH: 2 2 exon (s) 6447 - 6893 121 aa, chain + MATSTLNPNAPMFVPFEYRQVEDFSDHWWDLVHSSPWFRHYWLRECFSDPDADNDFSHTY GCSLLPDTDFIKKEENKKELITLGLLEWNKSRVTAEIPKYGKKVPKIVNVKVSPRHIQQP R >FGENESH: 3 3 exon (s) 7228 - 7656 73 aa, chain - MANVVELKVGLHCDECIKKILKTIKKIEDIETYDVDKQLNKVTVTGNVTNEEVIKVLHKI GKQASNWDQQSSC >FGENESH: 4 2 exon (s) 13751 - 14735 69 aa, chain - MTYNELRGNFPLENGFGDQKLLILILKDPRIFGFQKESNLLVLQEHTRKTDRKGMLVDAP DTCMERENF >FGENESH: 5 8 exon (s) 24571 - 26166 311 aa, chain + MGNALRSLYVNCCKPSADSDSLTHHPGVSALAHDLYNFEINSQVPQGLSTHVVSSKKAQS NWFKKLSDAWRETKPPPKTPEEASRFVIQTLKRHQKADVEGLLAFYGLPLPHSLVELTSD GTPPSHQQGLKFELHTLPVDAKAVADGDTVTVYVSTTDPREASCLPRDVQNAAIQRSKAR AQKNYAKADQLHKQIIDSGYRFCHRSIPVNHEEVLARKYRIRLRGIDAPESAMPYGKEAK EELTKVLQGKSLRVLVFDEDRYGRYVGDIYCNGIFAQWEKEARAKRIGLWASRNPEMPWE WRKQKRENQRS >FGENESH: 6 2 exon (s) 26736 - 28915 79 aa, chain + MEIRTAGPVECLLPNCKDLPPLRGIEHQIDFVTASQIPNRPLHVGAILKKQRICKDNLGS FLKKVWKKKEHEYILHTMH >FGENESH: 7 1 exon (s) 29278 - 29529 83 aa, chain + MEFEENAKQEEVVWRQRSRAWWLKEGDKNTKSFHRTVNCHRRFNNIDRLVSKETTLDEPL EIKGDYQFPPESSQRNKGMEITL >FGENESH: 8 2 exon (s) 29782 - 30411 117 aa, chain + MWGVKELKDFRPTDKAFRKLSQKSCLKLKKRPHTRGSSLPFSLYFGNGRSNEMLGTAQVN NWIRGLNVKPGDGLGLSISHLQYANDTLVLCDVNSYQMKHLSVIFILFEAISGLHVN >FGENESH: 9 3 exon (s) 30845 - 32196 159 aa, chain + MAMENLQLWKNLYGKKLLQQGMGWGWLLDHHQGTYDSRVQMVLAYGDQLGIRSPKLLKIP RLEVEARKTLFWDDIRSDRHQLERNQVDYAKEYTGSFSLLEQRWRVTLDASILANEIIGS RMRCDTPALLINIKRLMIIALEFLVIHPIQEELGEKYKM >FGENESH: 10 2 exon (s) 33050 - 33499 116 aa, chain + MRLEGWNKHSMFEGDTMVLNQFSSLESILEHRSLTNDELLQKGHLAMESKSIRDLTLLTL QVMMGLPSWIQILYKAENAELLSDSLQGNNDLEARLESSTDQRHKQRGAGMVTKTV >FGENESH: 11 4 exon (s) 34559 - 37406 142 aa, chain + MRENIKHYGKRSFKTSMGRTVHGAPILSLTLKESQFGDFEHFRQPLHCEEVHMEQPPNFV GKGNSVDIFFWFNISGVSSFKPMAVAKAVASWARKLNSRKKEVWSVAPSCIFWLIPQETR NDIILKVWKSTSGLHEVETRSM >FGENESH: 12 3 exon (s) 37962 - 39543 186 aa, chain - MGKSLPSPNRIQDFARIINSNRIHHPTQVKPATRIRSVPSPVAAKSRAVVDGDSSERRLK LKKNMEEASSNSNSNSNTSSSNQRRLPLADVVADCVKRWFHDTLKEAKAGDANMQVLVVF RFSVSTAVSEDIGNASTDWSIWVQGRAWITRASKSRSSAWKVSDKRPGYNASDSDSDDTV EDAKQN >FGENESH: 13 3 exon (s) 45915 - 47516 130 aa, chain + MNKEKEHELIVEVALQVGHCHNSRGLINHLLSLHHVTWIIASCLSLVDMVNCLNIRIDLY YWFILGLISKDPDLKLMDHLDNQPSRLVEGTTGHIGRRGPRPVAKEKGSSYTPPPQPING TTGGYSSRGP >FGENESH: 14 2 exon (s) 58795 - 60029 137 aa, chain + MNESSSSLRITRGSPLHVNVVDILPSFSMGLTQDFGVNVGSLGKSKQVIQEQTMEELRSK KKNDPMAVQKVTKNVKARGFKIVQETRKRKAVNIESEENASEVVGSEELHNHEEVRYICK NREKGQFTCNVIRKSTH >FGENESH: 15 2 exon (s) 60107 - 61046 274 aa, chain + MRRCHVQAQLFRCIMLRKLEGKSVNAILLYINGTMFRFTIREFAIISDLNCCDNGADFYF DTDQPNRIIDEYFPANSPVTKVRLAEAFKAKVWGDNQGDAYKFGILYYIHVFIMSAEPTT TTIDRLDFDLVDTGRFMDYPWGRKAFNELAKSINNKIKPCGQYYRIQGFPLPMQVWFYEC CSYVDDKIVVKVSSHIPRIINWVTKNDHPRFDYFMKIIFNDADNPIKFRNIEPTAMEIII LQLPPSTEQSISQGLQTDQNKVTDLDDDFQNRPV >FGENESH: 16 3 exon (s) 61178 - 61704 127 aa, chain + MARKATRSQSININSVEKHSDAGTSHNNEHGEQKSVQDRTQMGQIKKSTSITISRDEFEA FKKSIIKYTIQIYVKDEFADLRKMLEDKFKTVLEAMNSKVNVVDDDQESPVEDVHHQPTY TPHEPQS >FGENESH: 17 3 exon (s) 62130 - 63068 258 aa, chain + MVYNQFVRYLRYYFLFKLGDNLQELNQNSSLLDQVILGDNLNDVSGTASQDQLVLYANVD AQQNAQRETESSSNSRVIYNIYNAASHERFAEAEESIIVAAPIQMVYMPDSNQETVVTES EDELPDHLLPSVNTLQNIVLQKQVEAEVTPMPAVRHRRPGPFNISPYMTSLGSDASSSSR QPVVFYMKHPFVSLSDKEESDLFSNFWIWLKEDLLVKHYKKNYAEDRYKKGKATLPQLFN FGVAKIDNKNWFYSLSAS >FGENESH: 18 2 exon (s) 63330 - 63867 164 aa, chain + MIIDYINGYKMLAYAPWHTVDDVFIPVNLEGKLHWILIVISFNDRCIKVYDSINNSLHHS FVVNHIKKYAQLIPLYLVKSDFYLKKGLNIASHHRYQGHTVYDSFEIVYVEDLPQQPVAS FYTLSSIITFELFFRTYAEFLSERKDIPADLDPEEICLRYGALL >FGENESH: 19 2 exon (s) 65298 - 66166 253 aa, chain - MLMDTVEKEDITVKEYLDLAGYEKWALCYAQVHRGWHMTSNIAESINAALVSARELPIFE FLEEVRLLFGRWNHDYKKEATCIFTSLIGKYHDILADNEALSTRMTVVPSTEYVHNVNDD GRYFVVCLKEKTCTCGRFRYEEIPCEHAWAVLKLKSLPPDEYCSDLYKPKTMLKTYNMPI HPLPDVKAWLIPDSVIADDVLPPKFKRPLGSQRVSLRKKQQESYRGLRGKNTCSTCGMTG HNRRSCRNKPKDV >FGENESH: 20 4 exon (s) 66755 - 71687 251 aa, chain - MRINFDKSWAHVYNILSYYCERTLEHLGFFIVDTDLGRVKERKEILEETRNKGVVLALYE ALSSRDVDKVQKLLASDLEWWFHGPPSHQFLMRILTGTANSDHYFFKFIPQSVDAFGSTV LVEGCDPDHSITWVHAWTVDDGIITQVREYFNTSLTVTRLDNSNNNNNCPSSDLSSIAAT RHCPSLWESSLPNRVDHKRKYTPADIRKDVKIDLGVDVNYMLAWRARKKALKALRGTPVA SYAKLPAYLYI