FGENESH 2.4 Prediction of potential genes in Nicotiana_dicot genomic DNA Time : Thu Dec 13 17:42:17 2007 Seq name: C06HBa0308F14.2 AC211076.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0308F14 sequenced_by:cbsg [organism=Solanum lycopersicum] Length of sequence: 93170 Number of predicted genes 18 in +chain 9 in -chain 9 Number of predicted exons 27 in +chain 14 in -chain 13 Positions of predicted genes and exons: Variant 1 from 1, Score:278.161230 G Str Feature Start End Score ORF Len 1 + 1 CDSo 23664 - 23903 8.44 23664 - 23903 240 1 + PolA 23931 2.25 2 - PolA 24167 2.25 2 - 1 CDSl 24213 - 24274 -3.52 24213 - 24272 60 2 - 2 CDSf 25536 - 25665 18.56 25537 - 25665 129 3 - PolA 28460 2.25 3 - 1 CDSl 28862 - 29054 14.71 28862 - 29053 192 3 - 2 CDSf 29267 - 29526 5.97 29269 - 29526 258 4 - PolA 47680 2.25 4 - 1 CDSo 47691 - 47783 0.87 47691 - 47783 93 5 + 1 CDSo 48400 - 48480 0.98 48400 - 48480 81 5 + PolA 48499 0.75 6 - PolA 49305 -0.75 6 - 1 CDSo 49362 - 50147 103.89 49362 - 50147 786 7 - PolA 50689 2.25 7 - 1 CDSl 50731 - 50742 -2.73 50731 - 50742 12 7 - 2 CDSf 51198 - 51365 6.79 51198 - 51365 168 8 + 1 CDSf 52544 - 52677 4.45 52544 - 52675 132 8 + 2 CDSl 52782 - 52854 2.48 52783 - 52854 72 8 + PolA 52899 -2.05 9 + 1 CDSf 58941 - 58982 2.55 58941 - 58982 42 9 + 2 CDSl 59600 - 59749 2.84 59600 - 59749 150 9 + PolA 60024 2.25 10 + 1 CDSf 60856 - 60912 -3.80 60856 - 60912 57 10 + 2 CDSl 61193 - 61300 5.97 61193 - 61300 108 10 + PolA 61486 0.75 11 - PolA 73877 2.25 11 - 1 CDSo 74111 - 74272 11.08 74111 - 74272 162 12 + 1 CDSo 74648 - 74842 21.12 74648 - 74842 195 12 + PolA 74912 -3.15 13 + 1 CDSo 75220 - 75333 12.31 75220 - 75333 114 13 + PolA 75372 -3.55 14 - PolA 75407 -8.05 14 - 1 CDSl 75471 - 75775 15.06 75471 - 75773 303 14 - 2 CDSf 76083 - 76158 6.62 76084 - 76158 75 15 - PolA 80195 2.25 15 - 1 CDSo 80323 - 80496 2.01 80323 - 80496 174 16 - PolA 80566 0.75 16 - 1 CDSo 80634 - 80897 14.80 80634 - 80897 264 17 + 1 CDSo 88387 - 88521 11.15 88387 - 88521 135 17 + PolA 88547 -0.55 18 + 1 CDSf 92114 - 92363 28.08 92114 - 92362 249 18 + 2 CDSi 92543 - 92718 6.83 92545 - 92718 174 18 + 3 CDSl 92934 - 93092 5.44 92934 - 93092 159 18 + PolA 93100 -2.55 Predicted protein(s): >FGENESH: 1 1 exon (s) 23664 - 23903 79 aa, chain + MGVKCAATKPKNYTEIGLVHRSTDQWTGRYLIDGPSIGSIYPWYVLKFWLSLYAIDGPAD GLSTNLRTVNVVSLVHKNQ >FGENESH: 2 2 exon (s) 24213 - 25665 63 aa, chain - MISCWGVGVDSELSASSYDARWVGTLGEWLQMAGTRGSGLIRPYPHTNLAFPTTNEREFI EPS >FGENESH: 3 2 exon (s) 28862 - 29526 150 aa, chain - MANITWPLIVQFIEEYSPLINYKIVGWIHPPTRTYKCNNDGPRKDSFAFWVRNEEGDFLY DKTRVLKDVLVIVSQIKAIKMGIDYYLYKLAAFHNLEEIPQKAKAIIQLGKEKIPNLRII EVQNKNYRIQWGDIELIECINNKELVNRLS >FGENESH: 4 1 exon (s) 47691 - 47783 30 aa, chain - MVVDRSEDRQMKTNATIVTADDDARSDQFL >FGENESH: 5 1 exon (s) 48400 - 48480 26 aa, chain + MKPKKESPADQFTENPIKTYPHLKSV >FGENESH: 6 1 exon (s) 49362 - 50147 261 aa, chain - MDLHLFNIHKEISFSSLTSLTSRSLFAISLSRTTTATTTTITTKTTTTTDHNNNNNDKNN NNDNNINNNNNNDNNDNDNDNDKDKDSEKTTTTTTTTTTTMIITTTMITKMTTTMIMTTT TTTTTTTITTTKTTKKTTTTITTMTTTTTITTTTTSRTTTTTSITTITTTTTTTSSTITT TTTTTITIMSTRTRTPTRTMMTMMTTTTMPTIMTMQMMTSSLLPSLTTTTATTTTTTMTT PTPTNDDNEDGEENNDNKRRP >FGENESH: 7 2 exon (s) 50731 - 51365 59 aa, chain - MYQRILRSTLGLIYYRYTIFKWIRMNLGYKYKFRSPLWVSQILANRTTYIHLCDSYTIL >FGENESH: 8 2 exon (s) 52544 - 52854 68 aa, chain + MNFSSGPYIGHLSFITIFLLKKQISTRNIPYSDRIVSANLQSAFMAYSGVMLGLSPYSFF YFFCIHFK >FGENESH: 9 2 exon (s) 58941 - 59749 63 aa, chain + MYLGCPIRHGIKKKVIATIFNEEVCRNIKNVQGDAFRRGKSYTFVDASGTGIFKLGLFGR YEW >FGENESH: 10 2 exon (s) 60856 - 61300 54 aa, chain + MSSDIKSFKVLTCWDNILEIVVCAEVLRDEWRYASWIFIGEDATIWERDGSTLN >FGENESH: 11 1 exon (s) 74111 - 74272 53 aa, chain - MANKKNSPLKSILMSIKQLMTSPMGQTGISITQLTLGDCAFPIGLGDFILKSH >FGENESH: 12 1 exon (s) 74648 - 74842 64 aa, chain + MDHTWTLVGVGGSPRVPSSEISGEEDQVGPCEQLDSLSPFNPLSEKRQKKRKENPWTDPI NSTS >FGENESH: 13 1 exon (s) 75220 - 75333 37 aa, chain + MVESVGGPERWWFTLRRMSAIRGRLSPTHELSRFKAL >FGENESH: 14 2 exon (s) 75471 - 76158 126 aa, chain - MDRSPRFGSISSDNCPMKTRFRYGSAFRLLRLAARRLYCSPTTPFSWFRLIPFRSPLLRE SLLLSFPLATKMFQFARLSLACPWIQQQFESLPYSGISGSMLIFNSPKHFVNYYDLPRHW VPRYPP >FGENESH: 15 1 exon (s) 80323 - 80496 57 aa, chain - MTITRMKKGECQRIPNNGVLSTGATERYVFRSRIETPPSFVLFVGIDNTYMIRCICS >FGENESH: 16 1 exon (s) 80634 - 80897 87 aa, chain - MSKNFPQKHKPNKCSMCGEQTQEFCRKMVWCTDQWTYRWAVDGIRRSQVCLEILSMFVAI KGIIKDLSTHLHTINGVSSVQRTTGDI >FGENESH: 17 1 exon (s) 88387 - 88521 44 aa, chain + MKLRNSPSHHLWSVGGGRGTPPENLPMIRPSEECIGKFSHDPIK >FGENESH: 18 3 exon (s) 92114 - 93092 194 aa, chain + MPQNSSLLKKWLWRFAEDRTALWENVIQQKYGQNGQWCTEESTDTYGAELWRAIRFLCNN LGKDITFPMGNGLKIFFWKKNWDGITNDLDIIRWSHRTDAKFSASGIYRRALSELTVRER VPWKAIWRSMTPDKVKCFSWSVKGSEQKPTEMDLHMVDYMEGERKRIFKGRPNSIHKIKE NAFLLYVFGVKSNV