GeneSeqer. Version of March 12, 2006. Date run: Mon Jul 24 22:48:26 2006 (Bayesian) Splice site model (species): Arabidopsis thaliana Fast search parameters: MinMatchLen 16, MinQualityHSP 30, MinQualityCHAIN 50. Total number of ESTs: 175665 Total sequence length: 93213537 Minimum sequence length: 89 Maximum sequence length: 1082 Length distribution (number of sequences of specified length): < 100: 1 < 200: 2188 < 300: 8544 < 400: 20465 < 500: 39499 < 600: 49432 < 700: 32872 < 800: 19308 < 900: 3155 < 1000: 193 >=1000: 8 Input file : /tmp/bac-submission-temp-aFBcK/C06HBa0024L21/C06HBa0024L21.seq.screen ________________________________________________________________________________ Sequence 1: C06HBa0024L21.1-1, from 1 to 5996, both strands analyzed. ... started at: Mon Jul 24 23:15:05 2006 EST library file: /tmp/cxgn-bacpublish-resources-MvEQ8q/sgn_ests; matching gDNA +strand ... ... found all matches, elapsed seconds = 7 ... matches indexed, elapsed seconds = 7 HitsTableSize = 28 EST library file: /tmp/cxgn-bacpublish-resources-MvEQ8q/sgn_ests; matching gDNA -strand ... ... found all matches, elapsed seconds = 5 ... matches indexed, elapsed seconds = 6 HitsTableSize = 29 ******************************************************************************** EST sequence 22 +strand 725 n (File: SGN-E546548+) 1 GCAAAATAGG ATTCCTCTAC ACGTTTTAGG GGTCGTTTTG GACTATTCTT TCCTTAATTA 61 TAAAGATTGA GGGTTAATAT TAATAGGTCT AATTACTTGG GGGTTAAAAG AGGTAACCTT 121 AAGTTAATTA GTGGGTTTTA TTGTCCTCCT TTACACTTAA TTATACTTTT AATTAGGGTA 181 AAAAGAAGGA GGGTTTGAAT AAAACAAAAC AAAAGAAAAG AACAGAAAGA GAGGAGAAAC 241 GAACGAGTAG AGAGAGAGAA ACGAAGAGGA TAGCAAGGAT TTTGAGAAGA TAGCTTGTTG 301 ATTCAATTCT TCGGTGGAGG TAGGTTATGG TTTATGTTAC GATATTCGTA GTGAACTCTT 361 AATAGTGAAT ATTATGTGTT GATAGTATTG TAAACCCTGC TATGTGCTTA AGTTGTATGC 421 TTGCATGATT ATGATTATGA AATTGCGATG AATTAACAAA GCATGATGAA GCAATTGAAT 481 CCCAAATCTT GAAAGAACCC TAATTCGCTT GATATATTAT ATAATGAGAA TGATGATGCC 541 TTAGTATGAA AGAAGGCTTG ATAAATTATA TAATGAGAAT GATGATGCCT TAGTGTAAAA 601 GAAGGCTTGA TGGATTAGGG GATCGGGTGC CACGTTCCGG TACCAGGATA GAATGAATAT 661 GAGGATCGGA GTGTCACGTT CCGACACCAG GATAGAATAT GGATCGGGTG CCACGTTCCG 721 GTACC Predicted gene structure (within gDNA segment 1 to 3361): Exon 1 1728 2280 ( 553 n); cDNA 1 568 ( 568 n); score: 0.716 Intron 1 2281 2314 ( 34 n); Pd: 0.000 (s: 0.48), Pa: 0.000 (s: 0.32) Exon 2 2315 2391 ( 77 n); cDNA 569 650 ( 82 n); score: 0.591 Intron 2 2392 2464 ( 73 n); Pd: 0.000 (s: 0.82), Pa: 0.000 (s: 0.92) Exon 3 2465 2539 ( 75 n); cDNA 651 725 ( 75 n); score: 0.947 MATCH C06HBa0024L21.1-1+ SGN-E546548+ 0.727 705 0.972 C PGS_C06HBa0024L21.1-1+_SGN-E546548+ (1728 2280,2315 2391,2465 2539) Alignment (genomic DNA sequence = upper lines): GCTGAGTCGG ATTTCTTTAA GTGTTTTAAG GGACGTTTTG GACTATTCCT GCTATAATTA 1787 || | | || ||| || || |||||| | || ||||||| |||||||| | | |||||| GCAAAATAGG ATTCCTCTAC ACGTTTTAGG GGTCGTTTTG GACTATTCTT TCCTTAATTA 60 TAAATTTAGT GGGTTAATGT TAATA-ATTT AACTACTTGA GGGTTAAAGG ACATAACCTT 1846 |||| | | |||||||| | ||||| | | || |||||| |||||||| | | ||||||| TAAAGATTGA GGGTTAATAT TAATAGGTCT AATTACTTGG GGGTTAAAAG AGGTAACCTT 120 AAATTAATTA GTGGGTTACT TTTGTCATCT TTTATACTTA ATTATA-TGC TAATTAGGGT 1905 || ||||||| ||||||| | ||||| || |||| ||||| |||||| | |||||||||| AAGTTAATTA GTGGGTT-TT ATTGTCCTCC TTTACACTTA ATTATACTTT TAATTAGGGT 179 -AAAAGAAAA AGGGTTTGAA TAAGAAAGAT AGAAAGAATA G-AGAG-AAG AG-GGAGAAA 1961 ||||||| |||||||||| ||| | | | |||||| | | | || ||| || ||||||| AAAAAGAAGG AGGGTTTGAA TAAAACAAAA CAAAAGAAAA GAACAGAAAG AGAGGAGAAA 239 CGATCGAG-A GAGAGAG-G- AACGAAGAAG AAAGCGAGGA TTTTGAGGA- TTAGCTTGCT 2017 ||| |||| | ||||||| | |||||||| | | ||| |||| ||||||| | ||||||| | CGAACGAGTA GAGAGAGAGA AACGAAGAGG ATAGCAAGGA TTTTGAGAAG ATAGCTTG-T 298 TGATCACAAT TCTTCGGTGG AGGTAGGTTA TGG-TT-T-T TATGCTATTC GTAGTAAACT 2074 |||| |||| |||||||||| |||||||||| ||| || | | || | ||||| ||||| |||| TGAT-TCAAT TCTTCGGTGG AGGTAGGTTA TGGTTTATGT TACGATATTC GTAGTGAACT 357 CTTAATAGCG AATGATATGT ATTGGGTAGT GTTGTAAACC CTTCTATATG CTTAA-TTGT 2133 |||||||| | ||| ||||| || | |||| ||||||||| || |||| || ||||| |||| CTTAATAGTG AATATTATGT GTT-GATAGT ATTGTAAACC CTGCTATGTG CTTAAGTTGT 416 ATGCTTGCAT GAATGTGATT ATATGATT-- G-TG-ATAAA GTAAGCATGA TGAAGCTATT 2189 |||||||||| || | ||||| || ||| | || || || |||||||| |||||| ||| ATGCTTGCAT GATTATGATT ATGAAATTGC GATGAATTAA CAAAGCATGA TGAAGCAATT 476 GAATCCTAAA TCTTGAAA-A ACCCTAATCT ACTTTGTTAA TGATGATGTC TTGGTATAAA 2248 |||||| ||| |||||||| | |||||||| | ||| | | | || || | || | | GAATCCCAAA TCTTGAAAGA ACCCTAAT-T CGCTTGAT-A T-ATTATATA ATGAGAATGA 533 AGAAGGCTT- G-ATGAACGA AAG-TAGTGA GATTAGGGGA TCGGGTGCCA CGTTCCGGTA 2305 || | ||| | ||||| || | | | | | |||| TGATGCCTTA GTATGAAAGA AGGCTTGATA AATTA..... .......... .......... 568 CCAGGATAGT AT-ATGAGGA T-CGGA-GTG TCA-CGT-TC CGACACCAGG ATAGTATAGG 2360 | || ||||| | | || | | | || || | | || | |||| .........T ATAATGAGAA TGATGATGCC TTAGTGTAAA AGAAGGCTTG ATGGATTAGG 619 GGATCGGGTG CCACGTTCCG ATACCAGGAT AGTATATGAG GATCGGAGTG TCACGTTCCG 2420 |||||||||| |||||||||| ||||||||| | GGATCGGGTG CCACGTTCCG GTACCAGGAT A......... .......... .......... 650 ACACCAGGAT AGTATATGGA TCGGGTGCCA CGTTCCGGTA TCAGGATAGT ATATGAGGAT 2480 || | |||||||||| .......... .......... .......... .......... ....GAATGA ATATGAGGAT 666 CGGAGTGTCA CGTTTCGACA CCAGGATAGA ATATGGATCG GGTGCCACGT TCCGGTACC 2539 |||||||||| |||| ||||| |||||||||| |||||||||| |||||||||| ||||||||| CGGAGTGTCA CGTTCCGACA CCAGGATAGA ATATGGATCG GGTGCCACGT TCCGGTACC 725 hqPGS_C06HBa0024L21.1-1+_SGN-E546548+ (1728 2280,2315 2391,2465 2539) ******************************************************************************** EST sequence 5 +strand 542 n (File: SGN-E252199+) 1 CTTGATGAGA ATTTGTCTTA TGAGGAGGAG CCTGTTGCCA TTTTAGATAG AGAAGTCCGC 61 AAATTGAGGT CAAGGGAGAT TGCATCTATC AAAGTTCAAT GGAAGAATCG ACCAGTTGAA 121 GAATCCACTT GGGAGAAGGA AGTTGATATG CGAGAAAGAT ACCCATACCT GTTTACAGAT 181 TCAGGTACTC CTTTTCGCCC TTGTTTTTCT TCTTGTGATC GTTCGGGGAC GAACGATGGG 241 TAAATTGGTA TCTATTGTAA CGACCTGTTT AGTCGTTTTG AGTAACAGAT TTTATTTCTG 301 GAAAAACTGA CTGAGACGAC GGATCCCACG ACGGACCGTC GAGGGGGTCT CGTTCCAAAA 361 CACTTAGAAT TCTGAAATTT GGGTACTGAA ATCGACTCTC TGAACTTCGT GACGGAATGG 421 CAGGACGGAC CGTCACAGGC GTGATGGGCC GTCACAGACC CTTGGTAAAA ATCTAGTCTC 481 TGAACTCTGT GACGGACGTG CAGGACGGAC CGTCACAGAC TGCGTAATCC CAGGCTGGGT 541 CG Predicted gene structure (within gDNA segment 1 to 2803): Exon 1 1409 1693 ( 285 n); cDNA 255 518 ( 264 n); score: 0.881 MATCH C06HBa0024L21.1-1+ SGN-E252199+ 0.881 285 0.526 C PGS_C06HBa0024L21.1-1+_SGN-E252199+ (1409 1693) Alignment (genomic DNA sequence = upper lines): TTGTAACGAC CTGTTTAGTC GTTTTGAGCA GCAGATTTTA TTTCTGGAAA AACTGGCTGA 1468 |||||||||| |||||||||| |||||||| | ||||||||| |||||||||| ||||| |||| TTGTAACGAC CTGTTTAGTC GTTTTGAGTA ACAGATTTTA TTTCTGGAAA AACTGACTGA 314 GACGACGGAT CCCACGACGG ACCGTCATGG GCACGACGGA CCGTCGAGGG GGTCTCATTC 1528 |||||||||| |||||||||| ||||| | || | | ||| |||| ||| GACGACGGAT CCCACGACGG ACCGT----- ------C-GA --G--G-GGG --TCTCGTTC 355 TAAAACACTT AGAATTCTGA AATTTGGGTA CTGAAATCGA CTCTCTGAAC TTCGTGACGA 1588 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| CAAAACACTT AGAATTCTGA AATTTGGGTA CTGAAATCGA CTCTCTGAAC TTCGTGACGG 415 AGTGGCAGGA CGGACCGTCA CAGGCATGAC GGGCCGTCAC AGACCCTTGG TAAAAAATCT 1648 | |||||||| |||||||||| ||||| ||| |||||||||| |||||||||| | |||||||| AATGGCAGGA CGGACCGTCA CAGGCGTGAT GGGCCGTCAC AGACCCTTGG T-AAAAATCT 474 AGTCTCTGAA CTCTGAGACG GAAGCAGCAG GACGGACCGT CGCAG 1693 |||||||||| ||||| |||| || | |||| |||||||||| | ||| AGTCTCTGAA CTCTGTGACG GACG-TGCAG GACGGACCGT CACAG 518 hqPGS_C06HBa0024L21.1-1+_SGN-E252199+ (1409 1693) ******************************************************************************** EST sequence 13 +strand 763 n (File: SGN-E354383+) 1 AGATTCGATG GAGAAAGTGA AGTCTATTCA AGAAAAGCTT CTAGCGGCGC AAAGTAGACA 61 AAAAGAATAT GCAGATCGAA AGGTTAGAGA CTTAGAGTTC ATGGAGGGCG AACAAGTCTT 121 GTTGAAAGTC TCGCCAATGA AAGGGGTGAT GCGGTTTCGT AAAAGAGGTA AGTTAAGTCC 181 AAGGTATATT GGACCATTTG AGGTACTAAA GCGAGTAGGG GAGGTGGCTT ATGAATTAGC 241 CTTACCTCCA GGGCTGTCCG GAGTACATCC GGTATTTCAT GTATCCATGT TGAAAAGATA 301 CCATGGAGAT GGAAACTACA TCATCCGTTG GGATTCAGTT TCGCTTGGTG AGAATTGGAC 361 TTATGAGGAG GAACCAGTTG CTATTTTAGA TAGAGAGGTT CGCAAGTTGA GGTCGAGAGA 421 AATTGCATCC ATCAAAGTTC AATGGAAGAA TCGACCGGTT GAAGAAGCTA CTTGGGAGAA 481 GGAGGCAGAT ATGCAAGAAA AATACCCACA TCTGTTTACA GATTCAGGTA CTCCTTTTCG 541 CCATTGTTTT TCTTCATTTG ATCGTTCGGG GACGAACGAT GGGTAAATTG GTATCTATTG 601 TAACGACCTG TTTAGTCGTT TTGAGCAGCA GATTTTAATT CTGGAAAAAC TGGCCAAGAC 661 CACGGGCACT GCGACGGACC GTCACAGGCA CGACGGCCCG TCGAAGGTGC ATCGTTTCAG 721 CATACTTAGA ATTTCTGAAT TTGGATATGA AAATCGACTC TCT Predicted gene structure (within gDNA segment 1 to 3165): Exon 1 1409 1574 ( 166 n); cDNA 598 763 ( 166 n); score: 0.819 MATCH C06HBa0024L21.1-1+ SGN-E354383+ 0.819 166 0.218 C PGS_C06HBa0024L21.1-1+_SGN-E354383+ (1409 1574) Alignment (genomic DNA sequence = upper lines): TTGTAACGAC CTGTTTAGTC GTTTTGAGCA GCAGATTTTA TTTCTGGAAA AACTGGCTGA 1468 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| ||||||| | TTGTAACGAC CTGTTTAGTC GTTTTGAGCA GCAGATTTTA ATTCTGGAAA AACTGGCCAA 657 GACGACGGAT CCCACGACGG ACCGTCATGG GCACGACGGA CCGTCGAGGG GGTCTCATTC 1528 ||| |||| | |||||| ||||||| | ||||||||| ||||||| || | || || GACCACGGGC ACTGCGACGG ACCGTCACAG GCACGACGGC CCGTCGAAGG TGCATCGTTT 717 TAAAACACTT AGAATTCTGA AATTTGGGTA CTGAAATCGA CTCTCT 1574 | | |||| |||||| ||||||| || ||||||| |||||| CAGCATACTT AGAATTTCTG AATTTGGATA TGAAAATCGA CTCTCT 763 hqPGS_C06HBa0024L21.1-1+_SGN-E354383+ (1409 1574) ******************************************************************************** EST sequence 46 -strand 548 n (File: SGN-E356257-) 1 GTTAACTAGA AAATTAAAGT GATAGAGTCA AATAATGTAA CGACCCGTTT AGTCGTTTTG 61 AGCAGCAGAC TTTATTTCTG GAAAAACTGG CAGAAGCGAC GGACCCCACG ACGGACCGTC 121 ATGGGCACGA CGGACCATCG CAGGGTCTCG TTTCAAAACC CTCTTTCTTT TACCCCAAAT 181 TAACATATAA TTAAGAATAA AAGATGGCAA TAATACCCCA CTAATTAACT TAGGGTTACC 241 TCTTTTAACC CCAAGAATTT GAGTTATTAA TATAAACCCA CGAAATCTAT AATTAAGGAA 301 AGAATAGTCC AAAAACGTCC CTTAAAACGT GTAAGGAAAT CCGATTCTGC CTGGGATTTG 361 CGCAACCTGT GACGGGCCGT CGTGACTGTG ACGGTCCGTC CTGCAGGTCG TCGCAAGGGT 421 CAGAGAGTCA ATTTCCACTG AACAATCTAT GACGGTCCGT CACGCCTGTG ATGGTCCGTC 481 CTGTCATTCC GTCACGAAGT TCAGAGAGTC GATTTTCAGT ACCCAATTTC AGATTTTCTA 541 AGTGTTTT Predicted gene structure (within gDNA segment 351 to 5996): Exon 1 1410 1537 ( 128 n); cDNA 36 162 ( 127 n); score: 0.891 MATCH C06HBa0024L21.1-1+ SGN-E356257- 0.891 128 0.234 C PGS_C06HBa0024L21.1-1+_SGN-E356257- (1410 1537) Alignment (genomic DNA sequence = upper lines): TGTAACGACC TGTTTAGTCG TTTTGAGCAG CAGATTTTAT TTCTGGAAAA ACTGGCTGAG 1469 |||||||||| ||||||||| |||||||||| |||| ||||| |||||||||| |||||| || TGTAACGACC CGTTTAGTCG TTTTGAGCAG CAGACTTTAT TTCTGGAAAA ACTGGCAGAA 95 ACGACGGATC CCACGACGGA CCGTCATGGG CACGACGGAC CGTCGAGGGG GTCTCATTCT 1529 ||||||| | |||||||||| |||||||||| |||||||||| | ||| || ||||| || GCGACGGACC CCACGACGGA CCGTCATGGG CACGACGGAC CATCG-CAGG GTCTCGTTTC 154 AAAACACT 1537 ||||| || AAAACCCT 162 hqPGS_C06HBa0024L21.1-1+_SGN-E356257- (1410 1537) ******************************************************************************** EST sequence 16 +strand 565 n (File: SGN-E275667+) 1 GCGCTCAATG AAAGATTAGA TCTATTCAAT AATAATGTGA TTACTTTTGC ATATGCACCA 61 TGTGATGTCG ATATTCATAA TGTCAAAATT TTAAAAGACA TTGAGGCGAA TTGAGTGTAT 121 TCTAAAAAAG TTTAATATTT GAGAAAAGAT ATAAAAATAC CATTAAAGTT ATTTTAAATT 181 ATTAAAAAGA TATCTTAACT TAGCGGACAT TTTATTACTC CCTTAAATAA TTTTAAAGTG 241 TTGTAAATAT CTCATTTTTT AACCATCCTC ACTTGCAAAA AAAGAAGTTC AATTACGCAT 301 CAATTATAAT CTGCCACGTA TTAATTTTTA TTTTTATTTT TCTTATTTTA TCAATTTCAT 361 TTTCTTTTTC TTTTTCTTTT TCTCTTTCTT CTTCTTCCCT TTTCTCTTTC TTTCTTCTTT 421 CTTTATTCTC TTTCTTCTTT TTTTTCATTA CTGTAACGAC CTGTTTAGTC GTTTTGAGCA 481 GCAGATTTTA TTTCTGGAAA ATTGGCTGAA ACAACGGAAC CCACGACGGA CCGTCACAGG 541 CACGACGGTC CGTCACAGAT GTCTC Predicted gene structure (within gDNA segment 1 to 2709): Exon 1 1410 1524 ( 115 n); cDNA 452 565 ( 114 n); score: 0.887 MATCH C06HBa0024L21.1-1+ SGN-E275667+ 0.887 115 0.204 C PGS_C06HBa0024L21.1-1+_SGN-E275667+ (1410 1524) Alignment (genomic DNA sequence = upper lines): TGTAACGACC TGTTTAGTCG TTTTGAGCAG CAGATTTTAT TTCTGGAAAA ACTGGCTGAG 1469 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||| TGTAACGACC TGTTTAGTCG TTTTGAGCAG CAGATTTTAT TTCTGGAAAA -TTGGCTGAA 510 ACGACGGATC CCACGACGGA CCGTCATGGG CACGACGGAC CGTCGAGGGG GTCTC 1524 || ||||| | |||||||||| |||||| || |||||||| | |||| | ||||| ACAACGGAAC CCACGACGGA CCGTCACAGG CACGACGGTC CGTCACAGAT GTCTC 565 hqPGS_C06HBa0024L21.1-1+_SGN-E275667+ (1410 1524) ******************************************************************************** EST sequence 10 +strand 515 n (File: SGN-E242359+) 1 CCTAATCTAC TTTGTTAATA ATGATGCCTT GGTATAAAAG AAGGCTTGAT GAACGAAAGT 61 GGTGAGATTA GGGGATCGGG TGCCACGTTC CGGTACCAGG ATAGAATATG GATCGGGTGT 121 CACGTTCCGA CACCAGGATA GAATATGGAT CGGGTGCCAC GTTCCGGTAC CAGGATAGAA 181 TATGGATCGG GTGTCACGTT CCGACACCAG GATAGAATAT GGATCGGGTG TCACGTTCTG 241 ACACCAGGAT AGAATATGGA TCGGGTGCCA CGTTCCGGTG CCAGGATAGT ATATTGAGGA 301 GTGGAGTGTC ACGTAAGGAC ACGAGGGGAA TAAATATGAT GAATCTTGAA ATATGTTAAT 361 ATATGCAATC CAATGAACTA AATTCCCAAA TAAGTATGAT GAGGAGGTGT GAGTCCTCAT 421 TGATGTGCTT GGTGATGCAA CCAAGGGTTA TGGTAATTGC AAATGCTGCA TGCTAAGGAT 481 ATTAGTTAAT TTTATGATAT TGCTTAATAC ATACT Predicted gene structure (within gDNA segment 1611 to 3923): Exon 1 2211 2444 ( 234 n); cDNA 1 227 ( 227 n); score: 0.932 Intron 1 2445 2484 ( 40 n); Pd: 0.000 (s: 0.92), Pa: 0.000 (s: 0.96) Exon 2 2485 2587 ( 103 n); cDNA 228 330 ( 103 n); score: 0.840 Intron 2 2588 2624 ( 37 n); Pd: 0.000 (s: 0.72), Pa: 0.000 (s: 0.82) Exon 3 2625 2804 ( 180 n); cDNA 331 512 ( 182 n); score: 0.811 MATCH C06HBa0024L21.1-1+ SGN-E242359+ 0.871 517 1.004 C PGS_C06HBa0024L21.1-1+_SGN-E242359+ (2211 2444,2485 2587,2625 2804) Alignment (genomic DNA sequence = upper lines): CCTAATCTAC TTTGTTAATG ATGATGTCTT GGTATAAAAG AAGGCTTGAT GAACGAAAGT 2270 |||||||||| ||||||||| |||||| ||| |||||||||| |||||||||| |||||||||| CCTAATCTAC TTTGTTAATA ATGATGCCTT GGTATAAAAG AAGGCTTGAT GAACGAAAGT 60 AGTGAGATTA GGGGATCGGG TGCCACGTTC CGGTACCAGG ATAGTATATG AGGATCGGAG 2330 ||||||||| |||||||||| |||||||||| |||||||||| |||| |||| ||||||| | GGTGAGATTA GGGGATCGGG TGCCACGTTC CGGTACCAGG ATAGAATAT- -GGATCGG-G 117 TGTCACGTTC CGACACCAGG ATAGTATAGG GGATCGGGTG CCACGTTCCG ATACCAGGAT 2390 |||||||||| |||||||||| |||| ||| |||||||||| |||||||||| ||||||||| TGTCACGTTC CGACACCAGG ATAGAATA-T GGATCGGGTG CCACGTTCCG GTACCAGGAT 176 AGTATATGAG GATCGGAGTG TCACGTTCCG ACACCAGGAT AGTATATGGA TCGGGTGCCA 2450 || |||| | |||||| ||| |||||||||| |||||||||| || ||||||| |||| AGAATAT--G GATCGG-GTG TCACGTTCCG ACACCAGGAT AGAATATGGA TCGG...... 227 CGTTCCGGTA TCAGGATAGT ATATGAGGAT CGGAGTGTCA CGTTTCGACA CCAGGATAGA 2510 |||||| |||| |||| |||||||||| .......... .......... .......... ....GTGTCA CGTTCTGACA CCAGGATAGA 253 ATATGGATCG GGTGCCACGT TCCGGTACCA GAATAGTATA -TGAGGATCG GAGTGTCACG 2569 |||||||||| |||||||||| |||||| ||| | |||||||| |||||| | |||||||||| ATATGGATCG GGTGCCACGT TCCGGTGCCA GGATAGTATA TTGAGGAGTG GAGTGTCACG 313 TTCCGATACC AGGATAGAAT ATGGATCGGG TGTCACATTT CGGCACCAGG ATTAGTAAAG 2629 | || || ||| | | |||| TAAGGACACG AGGGGA-A.. .......... .......... .......... .....TAAAT 335 AGAATGAATC TTGAAATATG TTAATATACT CAATTTAATG AACCTAATTC CCAAATGAGT 2689 | ||||||| |||||||||| |||||||| |||| |||| ||| ||||| |||||| ||| ATGATGAATC TTGAAATATG TTAATATATG CAATCCAATG AACTAAATTC CCAAATAAGT 395 ATGATGGAGA GGCGTGAGTC CTCATTGATG TGCTTGGTGT TGTGACCAAG GGTTATGGTA 2749 |||||| || || ||||||| |||||||||| ||||||||| || |||||| |||||||||| ATGATGAGGA GGTGTGAGTC CTCATTGATG TGCTTGGTGA TGCAACCAAG GGTTATGGTA 455 ATTGTAAATG CCGCATGTTG A-G-TTGTAG TTGATTTTAT AATATTATCT GATATAT 2804 |||| ||||| | ||||| | | | | ||| || ||||||| ||||| | ||| || ATTGCAAATG CTGCATGCTA AGGATATTAG TTAATTTTAT GATATTGCTT AATACAT 512 hqPGS_C06HBa0024L21.1-1+_SGN-E242359+ (2211 2444,2485 2587,2625 2804) ******************************************************************************** EST sequence 33 -strand 686 n (File: SGN-E241789-) 1 TTGTTAATGA TGATGTCTTG GTATAAAAGA AGGCTTGATG AACTAAAAGA ATGAGGTTAG 61 GGGATCGGGT GTCACGAACC GACACGTAGT ATTAATGGAT CGGGTGTCAC GAACCGACAC 121 ATAGTATTAA TGGATCGGGT GTCACGAATC GGCACGTAGT ATTAGGAGAT CGGGTGTAAC 181 GAACCGACAC GTAGTATTAG GGGATCGGGT GTCACGAACC GACACGTAGC ATTAGGGGAT 241 CGGAGTATCA CGTTCCGACA CCACGATAGT AAAAAGAATG AATCTTGAAT TATGTTAATG 301 TACTCAATTT AATGAACCTG TTTCCCAAAT GAGTATGGTG TGGAGGCTTG AGTCCTCATA 361 GATGTTCTTG GGTTGTGCCC AATGGTTATG GTACTTGTTG TTGTCACCTG TTAAGTGTTA 421 TGGTTGATTT TATTTTATTA TTTGATATAT ATTGTTCTCT ATTCTGAGTT GGCCGATGAT 481 ATCTACTCAG TACTCGTGTT TGTACTGACC CCTACTTTTA TGTTTTCTTT TTGTTAATTG 541 TGGAGTGCAG CAAACGTACC GTCGTCTTCA ACTCAACCGC AACTCTAACC AGTCTTCATC 601 ACGTCAGATT TCAGGGTGAG CTATTGTTCC TAGCTCGGAC TGGATTCTCT CTCATTCATG 661 TCTTGATGTC CTTGAAGATC AGACAT Predicted gene structure (within gDNA segment 1612 to 4208): Exon 1 2222 2509 ( 288 n); cDNA 1 269 ( 269 n); score: 0.760 Intron 1 2510 2624 ( 115 n); Pd: 0.000 (s: 0.80), Pa: 0.000 (s: 0.94) Exon 2 2625 3038 ( 414 n); cDNA 270 686 ( 417 n); score: 0.842 MATCH C06HBa0024L21.1-1+ SGN-E241789- 0.808 702 1.023 C PGS_C06HBa0024L21.1-1+_SGN-E241789- (2222 2509,2625 3038) Alignment (genomic DNA sequence = upper lines): TTGTTAATGA TGATGTCTTG GTATAAAAGA AGGCTTGATG AACGAAAGTA GTGAGATTAG 2281 |||||||||| |||||||||| |||||||||| |||||||||| ||| ||| | |||| |||| TTGTTAATGA TGATGTCTTG GTATAAAAGA AGGCTTGATG AACTAAAAGA ATGAGGTTAG 60 GGGATCGGGT GCCACGTTCC GGTACCAGGA TAGTATATGA GGATCGGAGT GTCACGTTCC 2341 |||||||||| | |||| || | | || | |||||| ||||||| || |||||| || GGGATCGGGT GTCACGAACC -G-A-CACG- TAGTATTAAT GGATCGG-GT GTCACGAACC 115 GACACCAGGA TAGTATAGGG GATCGGGTGC CACGTTCCGA TACCAGGATA GTATATGAGG 2401 |||| || || | || | ||||||||| |||| || || | || |||| | | GACA-CATAG TA-T-TAATG GATCGGGTGT CACGAATCG- --GCACG-TA GTATTAGGAG 168 ATCGGAGTGT CACGTTCCGA CACCAGGATA GTATATGGAT CGGGTGCCAC GTTCCGGTAT 2461 ||||| |||| ||| |||| ||| | || || |||| |||||| ||| | || | | ATCGG-GTGT AACGAACCGA CACGTAG-TA TTA-GGGGAT CGGGTGTCAC GAACC-G-A- 222 CAGGATAGTA TATGAGGATC GGAGTGTCAC GTTTCGACAC CAGGATAGAA TATGGATCGG 2521 || | ||| | | | ||||| ||||| |||| ||| |||||| || ||||| CACG-TAGCA TTAGGGGATC GGAGTATCAC GTTCCGACAC CACGATAG.. .......... 269 GTGCCACGTT CCGGTACCAG AATAGTATAT GAGGATCGGA GTGTCACGTT CCGATACCAG 2581 .......... .......... .......... .......... .......... .......... 269 GATAGAATAT GGATCGGGTG TCACATTTCG GCACCAGGAT TAGTAAAGAG AATGAATCTT 2641 |||| || |||||||||| .......... .......... .......... .......... ...TAAAAAG AATGAATCTT 286 GAAATATGTT AATATACTCA ATTTAATGAA CCTAATTCCC AAATGAGTAT GATGGAGAGG 2701 ||| |||||| ||| |||||| |||||||||| ||| ||||| |||||||||| | || |||| GAATTATGTT AATGTACTCA ATTTAATGAA CCTGTTTCCC AAATGAGTAT GGTGTGGAGG 346 CGTGAGTCCT CATTGATGTG CTTGGTGTTG TGACCAAGGG TTATGGTAAT TGTAAATGCC 2761 | |||||||| ||| ||||| ||||| |||| || |||| || |||||||| | ||| || | CTTGAGTCCT CATAGATGTT CTTGG-GTTG TGCCCAATGG TTATGGTACT TGTTGTTGTC 405 GCATGTT--G AGTTGTAGTT GATTTTATAA TATTATCTGA TATATGTTGT TTTCTATTTT 2819 | |||| | ||| | ||| |||||||| |||||| ||| ||||| |||| | |||||| | ACCTGTTAAG TGTTATGGTT GATTTTATTT TATTATTTGA TATATATTGT TCTCTATTCT 465 GAGTTGGCCG ATGATATCTA CTCAGTACTT GTGTTTGTAC TGACCCCTAC TTGTATGTTT 2879 |||||||||| |||||||||| ||||||||| |||||||||| |||||||||| || ||||||| GAGTTGGCCG ATGATATCTA CTCAGTACTC GTGTTTGTAC TGACCCCTAC TTTTATGTTT 525 CTTTCTTTGT TAATTGTGGA GTACAGCAAA CGCACCGTCG TCTTCAACTC AACCGCAACT 2939 | | ||||| |||||||||| || ||||||| || ||||||| |||||||||| |||||||||| -TCTTTTTGT TAATTGTGGA GTGCAGCAAA CGTACCGTCG TCTTCAACTC AACCGCAACT 584 CTAGCCAGAC TCCATTACAC CAGATTTCAG GGTGAGCTAA CGCTTCTAGC TTGGACTGGA 2999 ||| |||| | | ||| || |||||||||| ||||||||| | | ||||| | |||||||| CTAACCAGTC TTCATCACGT CAGATTTCAG GGTGAGCTAT TGTTCCTAGC TCGGACTGGA 644 -TCTC-CTTC TTCATGTCTT GATG-CCTTG AAGTTCCGGC AT 3038 |||| || |||||||||| |||| ||||| ||| || | | || TTCTCTCTCA TTCATGTCTT GATGTCCTTG AAGATCAGAC AT 686 hqPGS_C06HBa0024L21.1-1+_SGN-E241789- (2222 2509,2625 3038) ******************************************************************************** EST sequence 2 +strand 774 n (File: SGN-E349977+) 1 GATGTTGTAA ACCTGTCTAT ATGCTTATTG GTATGCTTGC ATGATTATGA TTATGAAATT 61 GTTATGAATT AACAAAGCAT GATGAAGCTA TTGAATCCCA AATCTTGAAA GAACCCTAAT 121 TCACTTGATA TATTATATAA TAAGATTGAT GAGGCCTTAG TATGAGAGAA GGCTTGATAA 181 ATTATATAAT GAGAATGATG ATGCCTTAGT GTAGAAGAAG GCTTGATGAA TTAGGGGATC 241 GGGTGCCACG TTTCGGTACC AGGATAGAAT GAATATGAGG ATCGGAGTGT CACGTTCCGA 301 CACCAGGATA GAATATGAGG ATCGGAGTGT CACGTTCCGA CACCAGGATA GAATATGAGG 361 ATCGGGTGCC ACGTTCCGGT ACCAGGATAG AATGAATATG AGGATCGGAG TGTTACGTTC 421 CGACACCAGG ATAGAATATG AGGATCGGGT GCCACGTTCC GGTACCAGGA TAGAATGAAT 481 ATGAGGATCG GAGTGCCACG TTCCGGCACC AGGATAGAAA TAGAGGAGCG GAGTGTCACG 541 TACCGACACA AGAGGAAGAA AGATAATGAA TCTTGAAAGA TAATGAATAT ACTCAATCTA 601 ATGAACTTAA TTCCCAAATG AGTATGGTAT TGAGGCTTGA GTCCTCATGT GTGAACTTGA 661 CGGTAATTGT TAATGATNAA GAAATTGCTA TTGCTACATG ATGAGTATTG TAGTTGATTT 721 ACATTATTAT TGATATATAT TGTTCCCTAT TTTGAGTTAG CGATGATATC TACT Predicted gene structure (within gDNA segment 1 to 5996): Exon 1 2173 2186 ( 14 n); cDNA 192 206 ( 15 n); score: 0.679 Intron 1 2187 2250 ( 64 n); Pd: 0.000 (s: 0), Pa: 0.969 (s: 0.74) Exon 2 2251 2431 ( 181 n); cDNA 207 389 ( 183 n); score: 0.796 Intron 2 2432 2464 ( 33 n); Pd: 0.000 (s: 0.88), Pa: 0.000 (s: 0.90) Exon 3 2465 2841 ( 377 n); cDNA 390 774 ( 385 n); score: 0.739 MATCH C06HBa0024L21.1-1+ SGN-E349977+ 0.757 572 0.739 C PGS_C06HBa0024L21.1-1+_SGN-E349977+ (2173 2186,2251 2431,2465 2841) Alignment (genomic DNA sequence = upper lines): AGCATGATGA AGC-TATTGA ATCCTAAATC TTGAAAAACC CTAATCTACT TTGTTAATGA 2231 || ||||||| || | AGAATGATGA TGCCT..... .......... .......... .......... .......... 206 TGATGTCTTG GTATAAAAGA AGGCTTGATG AACGAAAGTA GTGAGATTAG GGGATCGGGT 2291 || | || | || | | | ||| ||||| |||||||||| .......... .........T AGTGTAGAAG AAGGCTTG-A -TGA-ATTAG GGGATCGGGT 244 GCCACGTTCC GGTACCAGGA TAG--T--AT ATGAGGATCG GAGTGTCACG TTCCGACACC 2347 |||||||| | |||||||||| ||| | || |||||||||| |||||||||| |||||||||| GCCACGTTTC GGTACCAGGA TAGAATGAAT ATGAGGATCG GAGTGTCACG TTCCGACACC 304 AGGATAGTAT A-GGGGATCG G-GTGCCACG TTCCGATACC AGGATAGTAT ATGAGGATCG 2405 ||||||| || | | |||||| | ||| |||| |||||| ||| ||||||| || |||||||||| AGGATAGAAT ATGAGGATCG GAGTGTCACG TTCCGACACC AGGATAGAAT ATGAGGATCG 364 GAGTGTCACG TTCCGACACC AGGATAGTAT ATGGATCGGG TGCCACGTTC CGGTATCAGG 2465 | ||| |||| ||||| ||| |||||| | G-GTGCCACG TTCCGGTACC AGGATA.... .......... .......... .........G 390 ATAGTATATG AGGATCGGAG TGTCACGTTT CGACACCAGG ATAGAATAT- -GGATCGGGT 2523 | | ||||| |||||||||| ||| ||||| |||||||||| ||||||||| ||||||||| AATGAATATG AGGATCGGAG TGTTACGTTC CGACACCAGG ATAGAATATG AGGATCGGGT 450 GCCACGTTCC GGTACCAGAA TAG--T--AT ATGAGGATCG GAGTGTCACG TTCCGATACC 2579 |||||||||| |||||||| | ||| | || |||||||||| ||||| |||| ||||| ||| GCCACGTTCC GGTACCAGGA TAGAATGAAT ATGAGGATCG GAGTGCCACG TTCCGGCACC 510 AGGATAG-AA TA-TGGATCG G-GTGTCACA TTTCGGCACC AGGATTAGTA AAGAGAATGA 2636 ||||||| || || ||| || | ||||||| | || || | | || | | |||| ||||| AGGATAGAAA TAGAGGAGCG GAGTGTCACG TACCGACA-C AAGAGGAAGA AAGATAATGA 569 ATCTTGAAAT AT-GTTAATA TACTCAATTT AATGAACCTA ATTCCCAAAT GAGTATGATG 2695 ||||||||| || | |||| |||||||| | ||||||| || |||||||||| ||||||| | ATCTTGAAAG ATAATGAATA TACTCAATCT AATGAACTTA ATTCCCAAAT GAGTATGGTA 629 GAGAGGCGTG AGTCCTCATT GATGTGCTTG -GTGTTGTGA CCAAGGGTTA TGGTAATTGT 2754 ||||| || ||||||||| || |||| || | || | | | | ||||| TTGAGGCTTG AGTCCTCATG TGTGAACTTG ACGGTAATTG TTAATGATNA -AGAAATTGC 688 AAATGCCGCA TGTTGAG--T TGTAGTTGAT TTTATAATAT TATCTGATAT ATGTTGTTTT 2812 | ||| || || |||| | ||||||||| |||| | ||| ||| |||||| || ||||| TATTGCTACA TGATGAGTAT TGTAGTTGA- TTTACATTAT TAT-TGATAT ATATTGTTCC 746 CTATTTTGAG TTGGCCGATG ATATCTACT 2841 |||||||||| || | ||||| ||||||||| CTATTTTGAG TTAG-CGATG ATATCTACT 774 hqPGS_C06HBa0024L21.1-1+_SGN-E349977+ (2251 2431,2465 2841) ******************************************************************************** EST sequence 18 +strand 481 n (File: SGN-E246710+) 1 CACAAACCGA CATATAGATT TAGGGGATCG GAGTGTCACG TACCGACACA AGAGGATTAA 61 TGAATATTGA GGGAGCGGAG TGTCACGTAC CGACACAAGA GAAATAAAGA TAATGAATCT 121 TGAAAGATGT TAATATACTC AATCTAATGA ACATGATTCC CAAATGAGTA TGGTATTGAG 181 GCTTGAGTCC TCATGTGTGA ACTTGACGGT AATTGTTAAT GATATAGTAT TTGTTGTTGC 241 TACATGTTGA GTATCATAGT TGATTTTATG ATATTACTTG GTATATATAT TGATTTCTAT 301 TTTGAGTTGG CCGATGATAT CTACTCAGTA CCCGTGTTTT GTACTGACCC CTACTTTTAT 361 GTTCTCTTCT TGTTTATTTG TGGAGTGCAG CAAACGTGCC ATCGTGTTCA ACTCAACAGT 421 AATTCAAGCC AGTCTTACTA CATCGGAAAT TCAGGGTGAG CTAATGCTTC TAGCTTGGAC 481 T Predicted gene structure (within gDNA segment 787 to 4731): Exon 1 2323 2353 ( 31 n); cDNA 73 104 ( 32 n); score: 0.790 Intron 1 2354 2624 ( 271 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.92) Exon 2 2625 2996 ( 372 n); cDNA 105 481 ( 377 n); score: 0.780 MATCH C06HBa0024L21.1-1+ SGN-E246710+ 0.780 403 0.838 C PGS_C06HBa0024L21.1-1+_SGN-E246710+ (2323 2353,2625 2996) Alignment (genomic DNA sequence = upper lines): GATCGGAGTG TCACGTTCCG ACACCAG-GA TAGTATAGGG GATCGGGTGC CACGTTCCGA 2381 || ||||||| |||||| ||| |||| || || | GAGCGGAGTG TCACGTACCG ACACAAGAGA AA........ .......... .......... 104 TACCAGGATA GTATATGAGG ATCGGAGTGT CACGTTCCGA CACCAGGATA GTATATGGAT 2441 .......... .......... .......... .......... .......... .......... 104 CGGGTGCCAC GTTCCGGTAT CAGGATAGTA TATGAGGATC GGAGTGTCAC GTTTCGACAC 2501 .......... .......... .......... .......... .......... .......... 104 CAGGATAGAA TATGGATCGG GTGCCACGTT CCGGTACCAG AATAGTATAT GAGGATCGGA 2561 .......... .......... .......... .......... .......... .......... 104 GTGTCACGTT CCGATACCAG GATAGAATAT GGATCGGGTG TCACATTTCG GCACCAGGAT 2621 .......... .......... .......... .......... .......... .......... 104 TAGTAAAGAG AATGAATCTT GAAATATGTT AATATACTCA ATTTAATGAA CCTAATTCCC 2681 |||||| |||||||||| |||| ||||| |||||||||| || ||||||| | | |||||| ...TAAAGAT AATGAATCTT GAAAGATGTT AATATACTCA ATCTAATGAA CATGATTCCC 161 AAATGAGTAT GATGGAGAGG CGTGAGTCCT CATTGATGTG CTTGGTGTTG TGACCAAGGG 2741 |||||||||| | | |||| | |||||||| ||| || |||| | | | | AAATGAGTAT GGTATTGAGG CTTGAGTCCT CATGTGTGAA CTTGACGGTA ATTGTTAATG 221 TTATGGTAAT TGTAAATGCC GCATGTTGAG T-T-GTAGTT GATTTTATAA TATTA-TCTG 2798 ||| ||| | ||| ||| ||||||||| | | ||||| |||||||| | ||||| | | ATATAGTATT TGTTGTTGCT ACATGTTGAG TATCATAGTT GATTTTATGA TATTACTTGG 281 -ATATATGTT GTTTTCTATT TTGAGTTGGC CGATGATATC TACTCAGTAC TTGTG-TTTG 2856 |||||| || | |||||||| |||||||||| |||||||||| |||||||||| ||| |||| TATATATATT GATTTCTATT TTGAGTTGGC CGATGATATC TACTCAGTAC CCGTGTTTTG 341 TACTGACCCC TACTTGTATG TTTCTTTCTT TGTTAATTGT GGAGTACAGC AAACGCACCG 2916 |||||||||| ||||| |||| || ||||| ||| |||| ||||| |||| ||||| || TACTGACCCC TACTTTTATG TTCTCTTCTT GTTTATTTGT GGAGTGCAGC AAACGTGCCA 401 TCGTCTTCAA CTCAACCGCA ACTCTAGCCA GACTCCATTA CACCAG-ATT TCAGGGTGAG 2975 |||| ||||| |||||| | | | || ||||| | || | || || | | | | |||||||||| TCGTGTTCAA CTCAACAGTA ATTCAAGCCA GTCT-TACTA CATCGGAAAT TCAGGGTGAG 460 CTAACGCTTC TAGCTTGGAC T 2996 |||| ||||| |||||||||| | CTAATGCTTC TAGCTTGGAC T 481 hqPGS_C06HBa0024L21.1-1+_SGN-E246710+ (2323 2353,2625 2996) ******************************************************************************** EST sequence 23 +strand 660 n (File: SGN-E349296+) 1 GAAAAACTGG CAGAAATGAC GGACCCCACG ACGGACCATC ATGGGCACGA CGGACCGTCG 61 CAGGGTCTCA TTTCAAAACA CTTAGGAAAT CTGAAATTGG GTACTGAAAA TCGACTCTCT 121 GAACTTCGTA ACGGAATGGC AAGACGGACC GTCACAGGCG TGATGGACCA TCACAGAGTC 181 TTCAGTGAAA ATCCAGTCTC TGAACCTTGC GACGACCTGC AGGACGGACC GTCGCAGGCA 241 CAACGGGCTG TCACAGGCTG CGTAAATCCC AGTCTGAGTC GGAATTCCTC AATTGTTTTA 301 AGGGACGTTT TTGACTATTC CTGCTTTAAT TATAAAGTTA GTGGGTTAAT GTTAATAAGT 361 CTAATTACTT GGGGGTTAAA AGAGGTAACC TTAAGTTAAT TAGTGGGTTA TTATTGCCAT 421 ATTTTATTCT TAATTATATA CTAATTAGGG TAAAAGAAAG AGGGTTTGAA TAAAGAAAAT 481 AGAAAGAACA AGAGAAAGAG AGAGAAAGTC GAACGAGAAA GAGGATCGAA CGAGAGGAAA 541 AAACACAAAG CTTGGGAAAT CACTTGCTTG ATCACGAATC TTCGGTGGAG GTAGGTTATG 601 GTTTCTCTTA CGATATTCGT AGTAAGCTCT TAATAGCGAA TAATATGTAT TGATAATATT Predicted gene structure (within gDNA segment 1 to 5996): Exon 1 1455 2107 ( 653 n); cDNA 1 660 ( 660 n); score: 0.808 MATCH C06HBa0024L21.1-1+ SGN-E349296+ 0.808 653 0.989 C PGS_C06HBa0024L21.1-1+_SGN-E349296+ (1455 2107) Alignment (genomic DNA sequence = upper lines): GAAAAACTGG CTGAGACGAC GGATCCCACG ACGGACCGTC ATGGGCACGA CGGACCGTCG 1514 |||||||||| | || | ||| ||| |||||| ||||||| || |||||||||| |||||||||| GAAAAACTGG CAGAAATGAC GGACCCCACG ACGGACCATC ATGGGCACGA CGGACCGTCG 60 AGGGGGTCTC ATTCTAAAAC ACTTA-GAAT TCTGAAATTT GGGTACTG-A AATCGACTCT 1572 ||||||| ||| ||||| ||||| ||| ||||||||| |||||||| | |||||||||| -CAGGGTCTC ATTTCAAAAC ACTTAGGAAA TCTGAAATT- GGGTACTGAA AATCGACTCT 118 CTGAACTTCG TGACGAAGTG GCAGGACGGA CCGTCACAGG CATGACGGGC CGTCACAGAC 1632 |||||||||| | ||| | || ||| |||||| |||||||||| | ||| || | | ||||||| CTGAACTTCG TAACGGAATG GCAAGACGGA CCGTCACAGG CGTGATGGAC CATCACAGAG 178 CCTTGGTAAA AAATCTAGTC TCTGAACTCT GAGACGGAAG CAGCAGGACG GACCGTCGCA 1692 ||| | ||||| |||| ||||||| | | ||| | | | |||||||| |||||||||| TCTTCAGTGA AAATCCAGTC TCTGAACCTT GCGAC-G-AC CTGCAGGACG GACCGTCGCA 236 GGCACGACGG CCCGTCACAG GCTGCGT-AA TCCCAGGCTG AGTCGGATTT CTTTAAGTGT 1751 ||||| |||| | ||||||| ||||||| || |||||| ||| ||||||| || | | || ||| GGCACAACGG GCTGTCACAG GCTGCGTAAA TCCCAGTCTG AGTCGGAATT CCTCAATTGT 296 TTTAAGGGAC GTTTTGGACT ATTCCTGCTA TAATTATAAA TTTAGTGGGT TAATGTTAAT 1811 |||||||||| ||||| |||| ||||||||| |||||||||| ||||||||| |||||||||| TTTAAGGGAC GTTTTTGACT ATTCCTGCTT TAATTATAAA GTTAGTGGGT TAATGTTAAT 356 AA-TTTAACT ACTTGAGGGT TAAAGGACAT AACCTTAAAT TAATTAGTGG GTTACTTTTG 1870 || | ||| | ||||| |||| |||| || | |||||||| | |||||||||| |||| | ||| AAGTCTAATT ACTTGGGGGT TAAAAGAGGT AACCTTAAGT TAATTAGTGG GTTATTATTG 416 TCATCTTTTA TACTTAATTA TATGCTAATT AGGGTAAAAG AAAAAGGGTT TGAATAAGAA 1930 ||| ||||| | |||||||| ||| |||||| |||||||||| ||| |||||| ||||||| | CCATATTTTA TTCTTAATTA TATACTAATT AGGGTAAAAG AAAGAGGGTT TGAATAAAGA 476 AGATAGAAAG AA-TAGAGAG AAGAGGGAGA AA--CGATCG AGAGAGA-GA -GGAACGA-A 1984 | |||||||| || ||||| ||||| |||| || ||| || ||| ||| || |||||| | AAATAGAAAG AACAAGAGA- AAGAGAGAGA AAGTCGAACG AGAAAGAGGA TCGAACGAGA 535 GAAGAAAGCG AGGATTTTGA GGATTAGCTT GCTTGATCAC AATTCTTCGG TGGAGGTAGG 2044 | | ||| | | ||| | | | ||| |||||||||| | ||||||| |||||||||| GGAAAAAACA CAAAGCTTGG GAAATCACTT GCTTGATCAC GAATCTTCGG TGGAGGTAGG 595 TTATGG-TT- T-TTATGCTA TTCGTAGTAA ACTCTTAATA GCGAATGATA TGTATTGGGT 2101 |||||| || | ||| | || |||||||||| ||||||||| |||||| ||| |||||| | | TTATGGTTTC TCTTACGATA TTCGTAGTAA GCTCTTAATA GCGAATAATA TGTATT-GAT 654 AGTGTT 2107 | | || AATATT 660 hqPGS_C06HBa0024L21.1-1+_SGN-E349296+ (1455 2107) ******************************************************************************** EST sequence 9 +strand 390 n (File: SGN-E242274+) 1 TGAGTCGACG GATCCCACGA CGGACCGTCA TGAGCACGAC GGACCGTGGA GGGTGTCTCG 61 TTCCAAAACA CTTAGAATTC TGAAATTTGG GTACTGAGAT CGACTCTCTG AACTTCGCGA 121 CGAAATGGCA CGACGGACCG TCACAGGCAT GACGGGCTGT CACAAACCCT TAGTGAAATT 181 TAATCTCTGA ACTTTGTGAC GGAAGCAGCA GGACGGACCG TCGCAGGCAC GACTGGTCGT 241 CACAGACTGC GTAACCCTGA CTGGGTCGGA TTTTTGTTAA ATGTTTTAAG GGGCGTTTTG 301 GACTATTCCT GCTTATAATT ATGAAATTAG TGGTTTAATG TTAATAATTC AATTACTTGG 361 GGGGTTGAAG GAGATAACCT TGAATTAATT Predicted gene structure (within gDNA segment 290 to 3880): Exon 1 1466 1855 ( 390 n); cDNA 1 390 ( 390 n); score: 0.878 MATCH C06HBa0024L21.1-1+ SGN-E242274+ 0.878 390 1.000 C PGS_C06HBa0024L21.1-1+_SGN-E242274+ (1466 1855) Alignment (genomic DNA sequence = upper lines): TGAGACGACG GATCCCACGA CGGACCGTCA TGGGCACGAC GGACCGTCGA GGGGGTCTCA 1525 |||| ||||| |||||||||| |||||||||| || ||||||| ||||||| || ||| ||||| TGAGTCGACG GATCCCACGA CGGACCGTCA TGAGCACGAC GGACCGTGGA GGGTGTCTCG 60 TTCTAAAACA CTTAGAATTC TGAAATTTGG GTACTGAAAT CGACTCTCTG AACTTCGTGA 1585 ||| |||||| |||||||||| |||||||||| ||||||| || |||||||||| ||||||| || TTCCAAAACA CTTAGAATTC TGAAATTTGG GTACTGAGAT CGACTCTCTG AACTTCGCGA 120 CGAAGTGGCA GGACGGACCG TCACAGGCAT GACGGGCCGT CACAGACCCT TGGTAAAAAA 1645 |||| ||||| ||||||||| |||||||||| ||||||| || |||| ||||| | || ||| CGAAATGGCA CGACGGACCG TCACAGGCAT GACGGGCTGT CACAAACCCT TAGT--GAAA 178 TCTAGTCTCT GAACTCTGAG ACGGAAGCAG CAGGACGGAC CGTCGCAGGC ACGACGGCCC 1705 | || ||||| ||||| || | |||||||||| |||||||||| |||||||||| ||||| | | TTTAATCTCT GAACTTTGTG ACGGAAGCAG CAGGACGGAC CGTCGCAGGC ACGACTGGTC 238 GTCACAGGCT GCGTAATCCC AGGCTGAGTC GGATTTCT-T TAAGTGTTTT AAGGGACGTT 1764 ||||||| || |||||| ||| | ||| ||| |||||| | | ||| |||||| ||||| |||| GTCACAGACT GCGTAA-CCC TGACTGGGTC GGATTTTTGT TAAATGTTTT AAGGGGCGTT 297 TTGGACTATT CCTGC-TATA ATTATAAATT TAGTGGGTTA ATGTTAATAA TTTAACTACT 1823 |||||||||| ||||| |||| ||||| || | |||||| ||| |||||||||| || || |||| TTGGACTATT CCTGCTTATA ATTATGAAAT TAGTGGTTTA ATGTTAATAA TTCAATTACT 357 T-GAGGGTTA AAGGACATAA CCTTAAATTA ATT 1855 | | ||||| ||||| |||| |||| ||||| ||| TGGGGGGTTG AAGGAGATAA CCTTGAATTA ATT 390 hqPGS_C06HBa0024L21.1-1+_SGN-E242274+ (1466 1855) ******************************************************************************** EST sequence 3 +strand 731 n (File: SGN-E578076+) 1 TTTCTCGGCC AAACGCGTCA TTTTTCTGTA GTTTTTCATA CTTCAATTTC CTTTTCATTT 61 CTTGGTTGAC CGACGAAACC CACCAACTCA CCACCTCATT CCGCCGTGGT CAGCTCGCTT 121 ACTAGGGTAT ACTCTACGTC TTCTTTAACT CATATAAGAC TCTATCTTTT GTATCTATAA 181 CTGAAGAACA AATTTGCAGT TCAACTGTTC GACGCTTTGC CCCAATTAAT CACAACGTAA 241 ATTTCTTCTG CTCTTAACCC TTGTTCAATT TCAGTGAATT ATCTATATCT CTGGTAAATT 301 GGAAGTCGGG AAACCGAAAA AAGTTGAAAT TTTTAGGGTT GTTTTGTTCT CTGTTTTGCT 361 CGTTAGGACG TTTGAATAAG AAAAATAGAA AGAACAAAGA GAAAACAGAA AAAGAAAGAG 421 AAACGAAGAG GATAGCAAGG ATTTTGAGAA GATAACTTGT TGATCGCAAT TCTTCGGTGG 481 AGGTAGGTTA TGGTTTCTCT TACGATATTC GTAGTAAACT CTTAATAGAG AATGATATGT 541 ATTGATAATA TTGTAAACCC TGCTATGTGC TTAATTGTAT GCTTGCATGA ATGTAACTAT 601 ATAATTGTGA TTATATAAGC ATGATGAAGT TATTGAATCC CAAATCTTGC AAAATCTTAA 661 TCTCTTTGTT CATAATGAGG CCTTGGTATA AAAGAAGGCG TGATGAACTA AAATAATGGG 721 ATTGATGATG C Predicted gene structure (within gDNA segment 1 to 4722): Exon 1 1427 1435 ( 9 n); cDNA 360 368 ( 9 n); score: 0.778 Intron 1 1436 1916 ( 481 n); Pd: 0.000 (s: 0), Pa: 0.361 (s: 0.76) Exon 2 1917 2286 ( 370 n); cDNA 369 729 ( 361 n); score: 0.819 MATCH C06HBa0024L21.1-1+ SGN-E578076+ 0.819 379 0.518 C PGS_C06HBa0024L21.1-1+_SGN-E578076+ (1427 1435,1917 2286) Alignment (genomic DNA sequence = upper lines): TCGTTTTGAG CAGCAGATTT TATTTCTGGA AAAACTGGCT GAGACGACGG ATCCCACGAC 1486 ||||| || TCGTTAGGA. .......... .......... .......... .......... .......... 368 GGACCGTCAT GGGCACGACG GACCGTCGAG GGGGTCTCAT TCTAAAACAC TTAGAATTCT 1546 .......... .......... .......... .......... .......... .......... 368 GAAATTTGGG TACTGAAATC GACTCTCTGA ACTTCGTGAC GAAGTGGCAG GACGGACCGT 1606 .......... .......... .......... .......... .......... .......... 368 CACAGGCATG ACGGGCCGTC ACAGACCCTT GGTAAAAAAT CTAGTCTCTG AACTCTGAGA 1666 .......... .......... .......... .......... .......... .......... 368 CGGAAGCAGC AGGACGGACC GTCGCAGGCA CGACGGCCCG TCACAGGCTG CGTAATCCCA 1726 .......... .......... .......... .......... .......... .......... 368 GGCTGAGTCG GATTTCTTTA AGTGTTTTAA GGGACGTTTT GGACTATTCC TGCTATAATT 1786 .......... .......... .......... .......... .......... .......... 368 ATAAATTTAG TGGGTTAATG TTAATAATTT AACTACTTGA GGGTTAAAGG ACATAACCTT 1846 .......... .......... .......... .......... .......... .......... 368 AAATTAATTA GTGGGTTACT TTTGTCATCT TTTATACTTA ATTATATGCT AATTAGGGTA 1906 .......... .......... .......... .......... .......... .......... 368 AAAGAAAAAG GGTTTGAATA AGAAAGATAG AAAGAATAGA GAGAAGAGGG AGAAACGATC 1966 ||||||||| ||||| |||| |||||| | | ||||| | ||||| | .......... CGTTTGAATA AGAAAAATAG AAAGAACAAA GAGAA-A-AC AGAAA--A-- 412 GAGAGAGAGA GGAACGAAGA AGAAAGCGAG GATTTTGAGG A-TTAGCTTG CTTGATCACA 2025 ||| | ||| | |||||||| || ||| || ||||||||| | || |||| |||||| || -AGA-A-AGA GAAACGAAGA GGATAGCAAG GATTTTGAGA AGATAACTTG -TTGATCGCA 468 ATTCTTCGGT GGAGGTAGGT TATGG-TT-T -TTATGCTAT TCGTAGTAAA CTCTTAATAG 2082 |||||||||| |||||||||| ||||| || | ||| | ||| |||||||||| |||||||||| ATTCTTCGGT GGAGGTAGGT TATGGTTTCT CTTACGATAT TCGTAGTAAA CTCTTAATAG 528 CGAATGATAT GTATTGGGTA GTGTTGTAAA CCCTTCTATA TGCTTAATTG TATGCTTGCA 2142 ||||||||| ||||| | || | ||||||| |||| |||| |||||||||| |||||||||| AGAATGATAT GTATT-GATA ATATTGTAAA CCCTGCTATG TGCTTAATTG TATGCTTGCA 587 TGAATGTGAT TATATGATTG TGATAAAGTA AGCATGATGA AGCTATTGAA TCCTAAATCT 2202 ||||||| | ||||| |||| |||| | || |||||||||| || ||||||| ||| |||||| TGAATGTAAC TATATAATTG TGATTATATA AGCATGATGA AGTTATTGAA TCCCAAATCT 647 TGAAAAACCC TAATCTACTT TGTTAATGAT GATGTCTTGG TATAAAAGAA GGCTTGATGA 2262 || |||| | |||||| ||| |||| || || || | ||||| |||||||||| ||| |||||| TGCAAAATCT TAATCT-CTT TGTTCATAAT GAGGCCTTGG TATAAAAGAA GGCGTGATGA 706 ACGAAAGTAG TGAGATTAGG GGAT 2286 || ||| || || |||| | ||| ACTAAAATAA TGGGATT-GA TGAT 729 hqPGS_C06HBa0024L21.1-1+_SGN-E578076+ (1917 2286) ******************************************************************************** EST sequence 1 +strand 605 n (File: SGN-E347579+) 1 AATAAAGAAA ATAGAAAGAA CAAGAGAGAG AGGAAGAATC GAACGAGAAG GGAGAAACAA 61 AGCTTGGAGA AAAATTTGCT TGCTTGATCA CTAATCTTCG GTGGAGGTAG GTTATGGTTT 121 TCATGCTTTC ATAGTAAACT CTTAATAGAG AATGATATGT ATTGGTAGTA TTGTAAACCC 181 TGCTATATGC TTAATTGTAT GCATGCATGA ACGTGATTAT ATAATTGTGA TTATATTAAG 241 CATGATGAAG TTATTGAATC CCAAATCTTG ATAAAAATCT AATCTCTTAT TAATGATGAT 301 GCCTTGGTAT AGAAGAAGGC TTGATGAATA AAAGTAATGG GATTGATGAT GCCTTGGTAT 361 AGAGAAGGCC TGATGATTTA CAGAATGATA TTAGTGGATC GGAGTGTCAC GTACCGACAC 421 ATGCAGGGGA TCGGGTGTCA CGAACCGACA CGTAGAATTA GGGGATCGGG TGTCACGAAC 481 TGGCACGTAG AATTAGGGGA TCGGGTGTCA CGAACCGGCA CGTAGATTAG GGGATCAGGT 541 GTCACGAACC GACACGTAGA ATTAGGGGAT CGGGTGTCAC GAACCGACAC GTAGAATTAG 601 GGGAT Predicted gene structure (within gDNA segment 488 to 5996): Exon 1 2012 2291 ( 280 n); cDNA 79 355 ( 277 n); score: 0.861 Intron 1 2292 2359 ( 68 n); Pd: 0.000 (s: 0.76), Pa: 0.000 (s: 0.56) Exon 2 2360 2431 ( 72 n); cDNA 356 427 ( 72 n); score: 0.618 Intron 2 2432 2514 ( 83 n); Pd: 0.000 (s: 0.74), Pa: 0.000 (s: 0.72) Exon 3 2515 2623 ( 109 n); cDNA 428 529 ( 102 n); score: 0.679 MATCH C06HBa0024L21.1-1+ SGN-E347579+ 0.780 461 0.762 C PGS_C06HBa0024L21.1-1+_SGN-E347579+ (2012 2291,2360 2431,2515 2623) Alignment (genomic DNA sequence = upper lines): CTTGCTTGAT CACAATTCTT CGGTGGAGGT AGGTTATGGT TTTTATGCTA TTCGTAGTAA 2071 |||||||||| ||| | |||| |||||||||| |||||||||| ||| ||||| ||| |||||| CTTGCTTGAT CACTAATCTT CGGTGGAGGT AGGTTATGGT TTTCATGCT- TTCATAGTAA 137 ACTCTTAATA GCGAATGATA TGTATTGGGT AGTGTTGTAA ACCCTTCTAT ATGCTTAATT 2131 |||||||||| | |||||||| |||||| ||| ||| |||||| ||||| |||| |||||||||| ACTCTTAATA GAGAATGATA TGTATT-GGT AGTATTGTAA ACCCTGCTAT ATGCTTAATT 196 GTATGCTTGC ATGAATGTGA TTATATGATT GTGA-TAAAG TAAGCATGAT GAAGCTATTG 2190 |||||| ||| ||||| |||| |||||| ||| |||| || | |||||||||| |||| ||||| GTATGCATGC ATGAACGTGA TTATATAATT GTGATTATAT TAAGCATGAT GAAGTTATTG 256 AATCCTAAAT CTTGA-AAAA CCCTAATCTA CTTTGTTAAT GATGATGTCT TGGTATAAAA 2249 ||||| |||| ||||| |||| ||||||| | || ||||| ||||||| || ||||||| || AATCCCAAAT CTTGATAAAA ATCTAATCT- C-TTATTAAT GATGATGCCT TGGTATAGAA 314 GAAGGCTTGA TGAACGAAAG TAGTGAGATT AGGGGATCGG GTGCCACGTT CCGGTACCAG 2309 |||||||||| |||| |||| || || |||| | ||| | GAAGGCTTGA TGAATAAAAG TAATGGGATT -GATGATGCC TT........ .......... 355 GATAGTATAT GAGGATCGGA GTGTCACGTT CCGACACCAG GATAGTATAG GGGATCG-GG 2368 || || | | .......... .......... .......... .......... .......... GGTATAGAGA 365 TGCCACGTTC CGATACCAGG ATAGTATATG AGGATCGGAG TGTCACGTTC CGACACCAGG 2428 | | | | || ||| || ||| | ||||||||| |||||||| | |||||| | AGGCCTGATG ATTTA-CAGA ATGATATTAG TGGATCGGAG TGTCACGTAC CGACACATGC 424 ATAGTATATG GATCGGGTGC CACGTTCCGG TATCAGGATA GTATATGAGG ATCGGAGTGT 2488 | AGG....... .......... .......... .......... .......... .......... 427 CACGTTTCGA CACCAGGATA GAATATGGAT CGGGTGCCAC GTTCCGGTAC CAGAATAGTA 2548 |||| |||||| ||| | || | | || ||| | .......... .......... ......GGAT CGGGTGTCAC GAACC-G-A- CA-CGTAGAA 457 TATGAGGATC GGAGTGTCAC GTTCCGATAC CAGGATAGAA TATGGATCGG GTGTCACATT 2608 | | ||||| || ||||||| | | | || || | | ||||||| ||||||| TTAGGGGATC GG-GTGTCAC GAACTGGCAC GTAGA-ATTA -GGGGATCGG GTGTCACGAA 514 TCGGCACCAG GATTA 2623 |||||| ||||| CCGGCACGTA GATTA 529 hqPGS_C06HBa0024L21.1-1+_SGN-E347579+ (2012 2291) ******************************************************************************** EST sequence 51 -strand 730 n (File: SGN-E546506-) 1 GTTCCGGTAC CAGGATAGAA TATGAGGATC GGAGTGTCAC GTTCCGACAC CAGGATAGAA 61 AATGGATCGG GTGCCACGTT CCGGTACCAG GATAGAATGA GGATCGGAGT GCCACGTTCC 121 GGCACCAGGA TAGAAATAGA GGATCGGAGT GTCACGTACC GACACAAGAG GAAGAAAGAT 181 AATGAATCTT GAAAGATAAT GAATATACTC AATCTAATGA ACTTAATTCC CAAATGAGTA 241 TGGTATTGAG GCTTGAGTCC TCATGTGTGA ACTCGGTTGT AGTTATTGAT GAATTCATGG 301 TGTTATTGCT ACATGTTGAG TATTGTAGTT GATTTACATT ATTATTGATA TATACTGTTC 361 CCTATTTTGA GTTGGCCGAT GATATCTACT CAGTACGTGT GGTTGTACTG ACCCCTACTT 421 TCATGTTTTC CTCTTTGTTA TTTGTGTAAT GCAGCAAACG TTCCGTCAAC TTCAACTCAA 481 CAGTAGATCT AGCCAGTCTT CACTTCATCG GAAAATTCAG GGTGAGCTAA TGCGTCTAGC 541 TTGGACTGGG TCTTCTTCTT CAAGTCTTGA TGCCTTGAAT TTCCGGCATG GACTAGCTTT 601 TTAGTTATTT TGTTCTTAGA CATTCCTAGT TAAGTAATTT GAGATAGATG TTCTTGTGAT 661 GATGACTTCC AGATTTTGGG GATAATAATA ATAGTATTGA ATTGTTTTTA TTAAAAAAAA 721 AAAAAAAAAA Predicted gene structure (within gDNA segment 1516 to 5996): Exon 1 2452 3137 ( 686 n); cDNA 1 684 ( 684 n); score: 0.805 PPA cDNA 713 730 MATCH C06HBa0024L21.1-1+ SGN-E546506- 0.805 686 0.940 C PGS_C06HBa0024L21.1-1+_SGN-E546506- (2452 3137) Alignment (genomic DNA sequence = upper lines): GTTCCGGTAT CAGGATAGTA TATGAGGATC GGAGTGTCAC GTTTCGACAC CAGGATAGAA 2511 ||||||||| |||||||| | |||||||||| |||||||||| ||| |||||| |||||||||| GTTCCGGTAC CAGGATAGAA TATGAGGATC GGAGTGTCAC GTTCCGACAC CAGGATAGAA 60 TATGGATCGG GTGCCACGTT CCGGTACCAG AATAGTATAT GAGGATCGGA GTGTCACGTT 2571 ||||||||| |||||||||| |||||||||| |||| | || |||||||||| ||| |||||| AATGGATCGG GTGCCACGTT CCGGTACCAG GATAG-A-AT GAGGATCGGA GTGCCACGTT 118 CCGATACCAG GATAG-AATA -TGGATCGG- GTGTCACATT TCGGCACCAG GATTAGTAAA 2628 ||| ||||| ||||| |||| ||||||| ||||||| | || || || || | ||| CCGGCACCAG GATAGAAATA GAGGATCGGA GTGTCACGTA CCGACA-CAA GAGGAAGAAA 177 GAGAATGAAT CTTGAAATAT -GTTAATATA CTCAATTTAA TGAACCTAAT TCCCAAATGA 2687 || ||||||| ||||||| || | |||||| |||||| ||| ||||| |||| |||||||||| GATAATGAAT CTTGAAAGAT AATGAATATA CTCAATCTAA TGAACTTAAT TCCCAAATGA 237 GTATGATGGA GAGGCGTGAG TCCTCATTGA TGTGCTTGG- TGTTGTGACC AAGGGTTATG 2746 ||||| | ||||| |||| ||||||| || || || ||| || | | | | | GTATGGTATT GAGGCTTGAG TCCTCATGTG TGAACTCGGT TGTAGTTATT GATGAAT-TC 296 GTAATTGTAA ATGCCGCATG TTGAG--TTG TAGTTGATTT TATAATATTA TCTGATATAT 2804 | ||| | ||| |||| ||||| ||| ||||||| || || | ||||| | |||||||| AT-GGTGTTA TTGCTACATG TTGAGTATTG TAGTTGA-TT TACATTATTA T-TGATATAT 353 GTTGTTTTCT ATTTTGAGTT GGCCGATGAT ATCTACTCAG TACTTGTGTT TGTACTGACC 2864 |||| || |||||||||| |||||||||| |||||||||| ||| |||| | |||||||||| ACTGTTCCCT ATTTTGAGTT GGCCGATGAT ATCTACTCAG TACGTGTGGT TGTACTGACC 413 CCTACTTGTA TGTTTCTTTC TTTGTTAATT GTGGAGTACA GCAAACGCAC CGTCGTCTTC 2924 ||||||| | ||||| || ||||||| || ||| | | || ||||||| | |||| |||| CCTACTTTCA TGTTTTCCTC TTTGTTATTT GTGTAATGCA GCAAACGTTC CGTCAACTTC 473 AACTCAACCG CAACTCTAGC CAGACTCCAT TACA-C-CAG ATTTCAGGGT GAGCTAACGC 2982 |||||||| | | |||||| ||| || || | || | | | |||||||| ||||||| || AACTCAACAG TAGATCTAGC CAGTCTTCAC TTCATCGGAA AATTCAGGGT GAGCTAATGC 533 TTCTAGCTTG GACTGGATCT CCTTCTTCAT GTCTTGATGC CTTGAAGTTC CGGCATAGAC 3042 ||||||||| |||||| ||| |||||||| |||||||||| |||||| ||| |||||| ||| GTCTAGCTTG GACTGGGTCT TCTTCTTCAA GTCTTGATGC CTTGAATTTC CGGCATGGAC 593 TAGCTTTTTA TTTATTCTAG CTTTCTAGAT ACTCTTAGAA TTAGTGATTT GAGGATAGAT 3102 |||||||||| ||||| | | || |||| | || ||| | ||| |||| || ||||||| TAGCTTTTTA GTTATT-TTG -TTCTTAGAC ATTCCTAG-T TAAGTAATTT GA-GATAGAT 649 GTTCTTGTGA TGATGACTTC CAGATTTTGG GGATA 3137 |||||||||| |||||||||| |||||||||| ||||| GTTCTTGTGA TGATGACTTC CAGATTTTGG GGATA 684 hqPGS_C06HBa0024L21.1-1+_SGN-E546506- (2452 3137) ******************************************************************************** EST sequence 24 +strand 236 n (File: SGN-E209683+) 1 TAATGAACTA AATTCCCAAA TGAGTATGAT GAGGAGGTGT GAGTCCTCAT TGATGTGCTT 61 GGTGTTGTAA CCAAGGGTTA TGGTAACTAT AAATGCTGCA TGTTAAGGAT ATTAGTTGAT 121 TTTATGATAT TGCTTAATAC ATACTGTTCC CTATTTTGAG TTGGCCGATG ATATCTACTC 181 AGTACCCGTG GTTTGTACTG ACCCCTACTT TTATGTTTAT CTTCTTGTTA TTTGTG Predicted gene structure (within gDNA segment 1975 to 3741): Exon 1 2665 2897 ( 233 n); cDNA 1 236 ( 236 n); score: 0.839 MATCH C06HBa0024L21.1-1+ SGN-E209683+ 0.839 233 0.987 C PGS_C06HBa0024L21.1-1+_SGN-E209683+ (2665 2897) Alignment (genomic DNA sequence = upper lines): TAATGAACCT AATTCCCAAA TGAGTATGAT GGAGAGGCGT GAGTCCTCAT TGATGTGCTT 2724 |||||||| |||||||||| |||||||||| | |||| || |||||||||| |||||||||| TAATGAACTA AATTCCCAAA TGAGTATGAT GAGGAGGTGT GAGTCCTCAT TGATGTGCTT 60 GGTGTTGTGA CCAAGGGTTA TGGTAATTGT AAATGCCGCA TGTTGA-G-T TGTAGTTGAT 2782 |||||||| | |||||||||| |||||| | | |||||| ||| |||| | | | |||||||| GGTGTTGTAA CCAAGGGTTA TGGTAACTAT AAATGCTGCA TGTTAAGGAT ATTAGTTGAT 120 TTTATAATAT TATCTGATAT ATGTTGTTTT CTATTTTGAG TTGGCCGATG ATATCTACTC 2842 ||||| |||| | | ||| || |||| |||||||||| |||||||||| |||||||||| TTTATGATAT TGCTTAATAC ATACTGTTCC CTATTTTGAG TTGGCCGATG ATATCTACTC 180 AGTACTTGT- GTTTGTACTG ACCCCTACTT GTATGTTTCT TTCTTTGTTA ATTGTG 2897 ||||| || |||||||||| |||||||||| ||||||| | | |||||| ||||| AGTACCCGTG GTTTGTACTG ACCCCTACTT TTATGTTTAT CTTCTTGTTA TTTGTG 236 hqPGS_C06HBa0024L21.1-1+_SGN-E209683+ (2665 2897) ******************************************************************************** EST sequence 8 +strand 729 n (File: SGN-E351546+) 1 TTGGCCGATG ATATCTACTC AGTAGCCGTG TTTTGTACTG ACCCCTACTT TTATGTTTTT 61 CTTCTTGGTA TTTGTGGAGT GCAGCAAACG TGCCGTCATC TTCGACTCAA CAGTAACTCA 121 AGCCAGTCTT CGTCACACCG GATCTTCAGG GTGAGCTAAC GCTTCTAGCT TGGACTGGAT 181 CTTCTCCTTC ATGTCTTGAT GCCTTGAACT TCCGGCATGG ACTAGCTTCT TATGTAATTT 241 TTTAGCTTCT TAGAAACTCT TAGAATTAGT AGTTTAAAGT AGATGTTCTT GTGATGATGA 301 CTTCCAGGTT TTGGGAATAA TAGATGTTTA ATAATAGTAG TTATTGATTT TATTAATGAG 361 TTTAAGTCTT CCGCATTACT TTCTGTTGCT ATTACATTGA AATGTTAAGG TTTAGATTGG 421 TTGGTTCGCT CACATAGGAG GGTAAGTGTG GGTGCCAGTG GCGGCCCGGA TTTGGGTCGT 481 GACAAAACTT GGTATCAGAG CATTAGGTTC GTTGGTCTCA TCACACAAGA ACAAGTCTAG 541 TAGAGTCTTA AGGAACGGTA GGGGGACGCT TTTACTTTTC CTTGAGAGGC TATAAGACTT 601 TAGGAAAACT TCACTCTTTC ATTCTTTCTT TCGTGCTACT ACTTCGAGTC AATTGGTATC 661 TAAGCGATAC GAATTGGTAT CTGACCATNC TCACTCTCTT GCCAGATGGG TAGAACTAGA 721 GCAACGACT Predicted gene structure (within gDNA segment 2223 to 5251): Exon 1 2823 3547 ( 725 n); cDNA 1 727 ( 727 n); score: 0.819 MATCH C06HBa0024L21.1-1+ SGN-E351546+ 0.819 725 0.995 C PGS_C06HBa0024L21.1-1+_SGN-E351546+ (2823 3547) Alignment (genomic DNA sequence = upper lines): TTGGCCGATG ATATCTACTC AGTACTTGTG -TTTGTACTG ACCCCTACTT GTATGTTTCT 2881 |||||||||| |||||||||| |||| ||| ||||||||| |||||||||| ||||||| | TTGGCCGATG ATATCTACTC AGTAGCCGTG TTTTGTACTG ACCCCTACTT TTATGTTTTT 60 TTCTTTGTTA ATTGTGGAGT ACAGCAAACG CACCGTCGTC TTCAACTCAA CCGCAACTCT 2941 | ||| || ||||||||| ||||||||| ||||| || ||| |||||| | | ||||| CTTCTTGGTA TTTGTGGAGT GCAGCAAACG TGCCGTCATC TTCGACTCAA CAGTAACTCA 120 AGCCAGACTC CATTACACCA GAT-TTCAGG GTGAGCTAAC GCTTCTAGCT TGGACTGGAT 3000 |||||| || | | ||||| ||| |||||| |||||||||| |||||||||| |||||||||| AGCCAGTCTT CGTCACACCG GATCTTCAGG GTGAGCTAAC GCTTCTAGCT TGGACTGGAT 180 CTCCTTCTTC ATGTCTTGAT GCCTTGAAGT TCCGGCATAG ACTAGCTTTT TAT-T--TAT 3057 || || |||| |||||||||| |||||||| | |||||||| | |||||||| | ||| | | | CTTCTCCTTC ATGTCTTGAT GCCTTGAACT TCCGGCATGG ACTAGCTTCT TATGTAATTT 240 TCTAGCTTTC TAGATACTCT TAGAATTAGT GATTTGAGGA TAGATGTTCT TGTGATGATG 3117 | |||||| |||| ||||| |||||||||| ||| | | |||||||||| |||||||||| TTTAGCTTCT TAGAAACTCT TAGAATTAGT AGTTTAAAG- TAGATGTTCT TGTGATGATG 299 ACTTCCAGAT TTTGGGGATA GTGATAACTT TTGAGTTTAA GAAGTTATTT ATTTTTTATA 3177 |||||||| | ||| |||| | | ||| | || | ||| || || || ||| || || ACTTCCAGGT TTT-GGGA-A -TAATAGATG TTTA--ATAA -TAG-TAGTT ATTGATTTTA 352 TTATTGAGTT TTAAGTCTTC CGCATTTTAT TTTGTTTCT- TATGTTTGAA ATGTTGGGGT 3236 ||| |||| | |||||||||| |||||| | | |||| || | ||||| ||||| ||| TTAATGAG-T TTAAGTCTTC CGCATTACTT TCTGTTGCTA TTACATTGAA ATGTTAAGGT 411 TTAGATGGGT TGGTTCGCTC ACATAGTAGG ATAAGTGTGG GTGCCACTCG CGGCTC-GTT 3295 |||||| ||| |||||||||| |||||| ||| ||||||||| |||||| | | |||| | | | TTAGATTGGT TGGTTCGCTC ACATAGGAGG GTAAGTGTGG GTGCCAGTGG CGGCCCGGAT 471 TTGGGTCGTG AC-AAACTTG GTATCAAAGC ATTAGGTTCG TTGGTCTCAT CACACAAGAA 3354 |||||||||| || ||||||| |||||| ||| |||||||||| |||||||||| |||||||||| TTGGGTCGTG ACAAAACTTG GTATCAGAGC ATTAGGTTCG TTGGTCTCAT CACACAAGAA 531 CGAGTCTAGT AGAGTCTTAA GGAACGGTAG GGGGACGCCT TTACTTTTCT TTGAGAGGCT 3414 | |||||||| |||||||||| |||||||||| |||||||| | ||||||||| |||||||||| CAAGTCTAGT AGAGTCTTAA GGAACGGTAG GGGGACGCTT TTACTTTTCC TTGAGAGGCT 591 ATAAGACTTT AGGAAAA-TT --C-CATTCT TTCTTTTTTT CGTGCTATTA CTTGGGTCCA 3470 |||||||||| ||||||| || | | ||| |||||| ||| ||||||| || ||| | || ATAAGACTTT AGGAAAACTT CACTCTTTCA TTCTTTCTTT CGTGCTACTA CTTCGAGTCA 651 ATTGGTATCT AGGTGATACA AATTGGTATC TGACCATCTT CGCTCTACTT CGTAGATGGT 3530 |||||||||| | | ||||| |||||||||| ||||||| | | |||| ||| |||||| ATTGGTATCT AAGCGATACG AATTGGTATC TGACCATNCT CACTCT-CTT GCCAGATGGG 710 TCGAACTAGA GCAACGA 3547 | |||||||| ||||||| TAGAACTAGA GCAACGA 727 hqPGS_C06HBa0024L21.1-1+_SGN-E351546+ (2823 3547) ******************************************************************************** EST sequence 20 +strand 655 n (File: SGN-E356696+) 1 TTGGCCGATG ATATCTACTC AGTAGCCGTG TTTTGTACTG ACCCCTACTT TTATGTTTTT 61 CTTCTTGTTA TTTGTGGAGT GCAGCAAACG TGCCGTCATC TTCGACTCAA CAGTAACTCA 121 AGCCAGTCTT CGTCACACCG GATCTTCAGG GTGAGCTAAC GCTTCTAGCT TGGACTGGAT 181 CTTCTCCTTC ATGTCTTGAT GCCTTGAACT TCCGGCATGG ACTAGCTTCT TATGTAATTT 241 TTTAGCTTCT TAGAAACTCT TAGAATTAGT AGTTTAAAGT AGATGTTCTT GTGATGATGA 301 CTTCCAGGTT TTGGGAATAA TAGATGTTTA ATAATAGTAG TTATTGATTT TATTAATGAG 361 TTTAAGTCTT CCGCATTACT TTCTGTTGCT ATTACATTGA AATGTTAAGG TTTAGATTGG 421 TTGGTTCGCT CACATANGAG GGTAAGTGTG GGTGCCAGTG GCGGCCCGGA TTTGGGTCGT 481 GACAAAACTT GGTATCAGAG CATTAGGTTC GTTGGTCTCA TCACACAAGA ACAAGTCTAG 541 TAGAGTCTTA AGGAACGGTA GGGGGACGCT TTTACTTTTC CTTGAGAGGC TATAAGACTT 601 TAGGAAAACT TCACTCTTTC ATTCTTTCTT TCGTGCTACT ACTTGAGTCC AATTG Predicted gene structure (within gDNA segment 2223 to 4511): Exon 1 2823 3474 ( 652 n); cDNA 1 655 ( 655 n); score: 0.822 MATCH C06HBa0024L21.1-1+ SGN-E356696+ 0.822 652 0.995 C PGS_C06HBa0024L21.1-1+_SGN-E356696+ (2823 3474) Alignment (genomic DNA sequence = upper lines): TTGGCCGATG ATATCTACTC AGTACTTGTG -TTTGTACTG ACCCCTACTT GTATGTTTCT 2881 |||||||||| |||||||||| |||| ||| ||||||||| |||||||||| ||||||| | TTGGCCGATG ATATCTACTC AGTAGCCGTG TTTTGTACTG ACCCCTACTT TTATGTTTTT 60 TTCTTTGTTA ATTGTGGAGT ACAGCAAACG CACCGTCGTC TTCAACTCAA CCGCAACTCT 2941 | |||||| ||||||||| ||||||||| ||||| || ||| |||||| | | ||||| CTTCTTGTTA TTTGTGGAGT GCAGCAAACG TGCCGTCATC TTCGACTCAA CAGTAACTCA 120 AGCCAGACTC CATTACACCA GAT-TTCAGG GTGAGCTAAC GCTTCTAGCT TGGACTGGAT 3000 |||||| || | | ||||| ||| |||||| |||||||||| |||||||||| |||||||||| AGCCAGTCTT CGTCACACCG GATCTTCAGG GTGAGCTAAC GCTTCTAGCT TGGACTGGAT 180 CTCCTTCTTC ATGTCTTGAT GCCTTGAAGT TCCGGCATAG ACTAGCTTTT TAT-T--TAT 3057 || || |||| |||||||||| |||||||| | |||||||| | |||||||| | ||| | | | CTTCTCCTTC ATGTCTTGAT GCCTTGAACT TCCGGCATGG ACTAGCTTCT TATGTAATTT 240 TCTAGCTTTC TAGATACTCT TAGAATTAGT GATTTGAGGA TAGATGTTCT TGTGATGATG 3117 | |||||| |||| ||||| |||||||||| ||| | | |||||||||| |||||||||| TTTAGCTTCT TAGAAACTCT TAGAATTAGT AGTTTAAAG- TAGATGTTCT TGTGATGATG 299 ACTTCCAGAT TTTGGGGATA GTGATAACTT TTGAGTTTAA GAAGTTATTT ATTTTTTATA 3177 |||||||| | ||| |||| | | ||| | || | ||| || || || ||| || || ACTTCCAGGT TTT-GGGA-A -TAATAGATG TTTA--ATAA -TAG-TAGTT ATTGATTTTA 352 TTATTGAGTT TTAAGTCTTC CGCATTTTAT TTTGTTTCT- TATGTTTGAA ATGTTGGGGT 3236 ||| |||| | |||||||||| |||||| | | |||| || | ||||| ||||| ||| TTAATGAG-T TTAAGTCTTC CGCATTACTT TCTGTTGCTA TTACATTGAA ATGTTAAGGT 411 TTAGATGGGT TGGTTCGCTC ACATAGTAGG ATAAGTGTGG GTGCCACTCG CGGCTC-GTT 3295 |||||| ||| |||||||||| ||||| ||| ||||||||| |||||| | | |||| | | | TTAGATTGGT TGGTTCGCTC ACATANGAGG GTAAGTGTGG GTGCCAGTGG CGGCCCGGAT 471 TTGGGTCGTG AC-AAACTTG GTATCAAAGC ATTAGGTTCG TTGGTCTCAT CACACAAGAA 3354 |||||||||| || ||||||| |||||| ||| |||||||||| |||||||||| |||||||||| TTGGGTCGTG ACAAAACTTG GTATCAGAGC ATTAGGTTCG TTGGTCTCAT CACACAAGAA 531 CGAGTCTAGT AGAGTCTTAA GGAACGGTAG GGGGACGCCT TTACTTTTCT TTGAGAGGCT 3414 | |||||||| |||||||||| |||||||||| |||||||| | ||||||||| |||||||||| CAAGTCTAGT AGAGTCTTAA GGAACGGTAG GGGGACGCTT TTACTTTTCC TTGAGAGGCT 591 ATAAGACTTT AGGAAAA-TT --C-CATTCT TTCTTTTTTT CGTGCTATTA CTTGGGTCCA 3470 |||||||||| ||||||| || | | ||| |||||| ||| ||||||| || |||| ||||| ATAAGACTTT AGGAAAACTT CACTCTTTCA TTCTTTCTTT CGTGCTACTA CTTGAGTCCA 651 ATTG 3474 |||| ATTG 655 hqPGS_C06HBa0024L21.1-1+_SGN-E356696+ (2823 3474) ******************************************************************************** EST sequence 19 +strand 580 n (File: SGN-E356206+) 1 TTGGCCGATG ATATCTACTC AGTAGCCGTG TTTTGTACTG ACCCCTACTT TTATGTTTTT 61 CTTCTTGTTA TTTGTGGAGT GCAGCAAACG TGCCGTCATC TTCGACTCAA CAGTAACTCA 121 AGCCAGTCTT CGTCACACCG GATCTTCAGG GTGAGCTAAC GCTTCTAGCT TGGACTGGAT 181 CTTCTCCTTC ATGTCTTGAT GCCTTGAACT TCCGGCATGG ACTAGCTTCT TATGTAATTT 241 TTTAGCTTCT TAGAAACTCT TAGAATTAGT AGTTTAAAGT AGATGTTCTT GTGATGATGA 301 CTTCCAGGTT TTGGGAATAA TAGATGTTTA ATAATAGTAG TTATTGATTT TATTAATGAG 361 TTTAAGTCTT CCGCATTACT TTCTGTTGCT ATTACATTGA AATGTTAAGG TTTAGATTGG 421 TTGGTTCGCT CACATAGGAG GGTAAGTGTG GGTGCCAGTG GCGGCCCGGA TTTGGGTCGT 481 GACAAAACTT GGTATCAGAG CATTAGGGTC GTTGGTCTCA TCACACAAGA ACAAGTCTAG 541 TAGAGTCTTA AGGGACGGTA NGGGGACGCT TTTACTTTTC Predicted gene structure (within gDNA segment 2223 to 4256): Exon 1 2823 3403 ( 581 n); cDNA 1 580 ( 580 n); score: 0.824 MATCH C06HBa0024L21.1-1+ SGN-E356206+ 0.824 581 1.002 C PGS_C06HBa0024L21.1-1+_SGN-E356206+ (2823 3403) Alignment (genomic DNA sequence = upper lines): TTGGCCGATG ATATCTACTC AGTACTTGTG -TTTGTACTG ACCCCTACTT GTATGTTTCT 2881 |||||||||| |||||||||| |||| ||| ||||||||| |||||||||| ||||||| | TTGGCCGATG ATATCTACTC AGTAGCCGTG TTTTGTACTG ACCCCTACTT TTATGTTTTT 60 TTCTTTGTTA ATTGTGGAGT ACAGCAAACG CACCGTCGTC TTCAACTCAA CCGCAACTCT 2941 | |||||| ||||||||| ||||||||| ||||| || ||| |||||| | | ||||| CTTCTTGTTA TTTGTGGAGT GCAGCAAACG TGCCGTCATC TTCGACTCAA CAGTAACTCA 120 AGCCAGACTC CATTACACCA GAT-TTCAGG GTGAGCTAAC GCTTCTAGCT TGGACTGGAT 3000 |||||| || | | ||||| ||| |||||| |||||||||| |||||||||| |||||||||| AGCCAGTCTT CGTCACACCG GATCTTCAGG GTGAGCTAAC GCTTCTAGCT TGGACTGGAT 180 CTCCTTCTTC ATGTCTTGAT GCCTTGAAGT TCCGGCATAG ACTAGCTTTT TAT-T--TAT 3057 || || |||| |||||||||| |||||||| | |||||||| | |||||||| | ||| | | | CTTCTCCTTC ATGTCTTGAT GCCTTGAACT TCCGGCATGG ACTAGCTTCT TATGTAATTT 240 TCTAGCTTTC TAGATACTCT TAGAATTAGT GATTTGAGGA TAGATGTTCT TGTGATGATG 3117 | |||||| |||| ||||| |||||||||| ||| | | |||||||||| |||||||||| TTTAGCTTCT TAGAAACTCT TAGAATTAGT AGTTTAAAG- TAGATGTTCT TGTGATGATG 299 ACTTCCAGAT TTTGGGGATA GTGATAACTT TTGAGTTTAA GAAGTTATTT ATTTTTTATA 3177 |||||||| | ||| |||| | | ||| | || | ||| || || || ||| || || ACTTCCAGGT TTT-GGGA-A -TAATAGATG TTTA--ATAA -TAG-TAGTT ATTGATTTTA 352 TTATTGAGTT TTAAGTCTTC CGCATTTTAT TTTGTTTCT- TATGTTTGAA ATGTTGGGGT 3236 ||| |||| | |||||||||| |||||| | | |||| || | ||||| ||||| ||| TTAATGAG-T TTAAGTCTTC CGCATTACTT TCTGTTGCTA TTACATTGAA ATGTTAAGGT 411 TTAGATGGGT TGGTTCGCTC ACATAGTAGG ATAAGTGTGG GTGCCACTCG CGGCTC-GTT 3295 |||||| ||| |||||||||| |||||| ||| ||||||||| |||||| | | |||| | | | TTAGATTGGT TGGTTCGCTC ACATAGGAGG GTAAGTGTGG GTGCCAGTGG CGGCCCGGAT 471 TTGGGTCGTG AC-AAACTTG GTATCAAAGC ATTAGGTTCG TTGGTCTCAT CACACAAGAA 3354 |||||||||| || ||||||| |||||| ||| |||||| ||| |||||||||| |||||||||| TTGGGTCGTG ACAAAACTTG GTATCAGAGC ATTAGGGTCG TTGGTCTCAT CACACAAGAA 531 CGAGTCTAGT AGAGTCTTAA GGAACGGTAG GGGGACGCCT TTACTTTTC 3403 | |||||||| |||||||||| || |||||| |||||||| | ||||||||| CAAGTCTAGT AGAGTCTTAA GGGACGGTAN GGGGACGCTT TTACTTTTC 580 hqPGS_C06HBa0024L21.1-1+_SGN-E356206+ (2823 3403) ******************************************************************************** EST sequence 25 -strand 679 n (File: SGN-E370357-) 1 TTGGAGGTGG TGTTGCCATG GTGGATTGGG GGAAAAATGG AATTGGACTT TGTAGGAGGA 61 GAAATGGGCA TTTACTTACA CAAATGGCCA CTATTTACAA GAAAACACAT CAGAAATTCG 121 AGGAAAATTC TGCATCCGTA GGCAAATTTG AAAAATTTTA CAAATGGCAG AGGTGTAATC 181 AATCAATAAT ATTTGGGTGA CAGCCGAATG ATTAATTGAC ACTCGAATAA AGCAAACGTA 241 CCGTCGTCTT CAACTCAACC GCAACTCTAG CCAGTCTTCA TTATACCGGA TTTCAGTGTG 301 AGCTAACGCT TCTAGCTTGG ACTGGATCTT CTTCTTCATG TCTTGATGCC TTGAAGTTCC 361 GGCATGGACT AGCTTTTTAG TTATTCTAGC TTTCTAGATA CTCTTAGAAT TAGTAATTTG 421 AGGATAGATG TTCTTGTGAT GATGACTTCC AGATTTTGGG GATAATAATA GTTGTTGAGT 481 TTTTAGAAGT TATTTAATTG ATTTTCATTA ATGAGTTTAA GTCTTCCGCA TTATATTCCG 541 TCATTATATT GAAATGTTGG ATTTTGTATT GGTTGGTTCG CTCACATAGG AGGGTAAGTG 601 TGGGTGCCAC TTGCGGCTCG ATTTGGGTCG TGACATTAAA GATTATCGAA TTCATAATAT 661 AATTGTAAGA AAAAAAAAA Predicted gene structure (within gDNA segment 1 to 4564): Exon 1 2901 3308 ( 408 n); cDNA 228 635 ( 408 n); score: 0.886 PPA cDNA 667 679 MATCH C06HBa0024L21.1-1+ SGN-E370357- 0.886 408 0.601 C PGS_C06HBa0024L21.1-1+_SGN-E370357- (2901 3308) Alignment (genomic DNA sequence = upper lines): TACAGCAAAC GCACCGTCGT CTTCAACTCA ACCGCAACTC TAGCCAGACT CCATTACACC 2960 || ||||||| | |||||||| |||||||||| |||||||||| ||||||| || ||||| ||| TAAAGCAAAC GTACCGTCGT CTTCAACTCA ACCGCAACTC TAGCCAGTCT TCATTATACC 287 AGATTTCAGG GTGAGCTAAC GCTTCTAGCT TGGACTGGAT CTCCTTCTTC ATGTCTTGAT 3020 |||||||| |||||||||| |||||||||| |||||||||| || ||||||| |||||||||| GGATTTCAGT GTGAGCTAAC GCTTCTAGCT TGGACTGGAT CTTCTTCTTC ATGTCTTGAT 347 GCCTTGAAGT TCCGGCATAG ACTAGCTTTT TATTTATTCT AGCTTTCTAG ATACTCTTAG 3080 |||||||||| |||||||| | |||||||||| || ||||||| |||||||||| |||||||||| GCCTTGAAGT TCCGGCATGG ACTAGCTTTT TAGTTATTCT AGCTTTCTAG ATACTCTTAG 407 AATTAGTGAT TTGAGGATAG ATGTTCTTGT GATGATGACT TCCAGATTTT GGGGATAGTG 3140 ||||||| || |||||||||| |||||||||| |||||||||| |||||||||| ||||||| | AATTAGTAAT TTGAGGATAG ATGTTCTTGT GATGATGACT TCCAGATTTT GGGGATAATA 467 ATAACTTTTG AG-TTTAAGA AGTTATTT-A TT-TTTTATA TTATTGAGTT TTAAGTCTTC 3197 ||| | ||| || ||| ||| |||||||| | || ||| | ||| |||| | |||||||||| ATAGTTGTTG AGTTTTTAGA AGTTATTTAA TTGATTTTCA TTAATGAG-T TTAAGTCTTC 526 CGCATTTTAT TTTGTTTCTT ATGTTTGAAA TGTTGGGGTT TAGATGGGTT GGTTCGCTCA 3257 |||||| ||| | | | || || |||||| |||||| || | || |||| |||||||||| CGCATTATAT TCCG-TCATT AT-ATTGAAA TGTTGGATTT TGTATTGGTT GGTTCGCTCA 584 CATAGTAGGA TAAGTGTGGG TGCCACTCGC GGCTCGTTTT GGGTCGTGAC A 3308 ||||| ||| |||||||||| ||||||| || |||||| ||| |||||||||| | CATAGGAGGG TAAGTGTGGG TGCCACTTGC GGCTCGATTT GGGTCGTGAC A 635 hqPGS_C06HBa0024L21.1-1+_SGN-E370357- (2901 3308) ******************************************************************************** EST sequence 6 +strand 405 n (File: SGN-E336814+) 1 CCCAAAGCAA ACAAAGCACT TCATGATCAT GGATTGACAT ATTGCTAATT TTCATTATCT 61 TCTGCTTTCC CTTGCATTAT TTTTTATGAC AAGGAAACCC GCAACTACTC CTTTGCAATA 121 GCTTGCAAAT CACACAAGAG AGCAAACGTG CCGTCATCTT CGACTCAACA GTAACTCTAG 181 CCAGTCTTCA TTATTCCGGA TATTAAGGTG AGCTAATGTT TCTAGCTTGG ACTGGATCTT 241 CCTCTTCATG TCTTGATGTC TTGAAGTTCC GGCATGGACT AGCTTTCTTG TATTTTAGCT 301 TTTTAGAACA CTCTTAGTTT AGTACTTTGA TCATAGATGT TCTTGTGGTG ATGACTTCCA 361 GATTTTGGGG ATAATAATAG TTATTGATTT TATTAAAAAA AAAAA Predicted gene structure (within gDNA segment 193 to 4948): Exon 1 1246 1257 ( 12 n); cDNA 126 137 ( 12 n); score: 0.833 Intron 1 1258 2900 (1643 n); Pd: 0.613 (s: 0), Pa: 0.678 (s: 0.82) Exon 2 2901 3160 ( 260 n); cDNA 138 396 ( 259 n); score: 0.825 MATCH C06HBa0024L21.1-1+ SGN-E336814+ 0.825 272 0.672 C PGS_C06HBa0024L21.1-1+_SGN-E336814+ (1246 1257,2901 3160) Alignment (genomic DNA sequence = upper lines): CAAAGTACAC AAGTATATAT GTGTATAGTA ATAGTAGTAG TAGAAGAAGA AGTTTAGAAT 1305 |||| |||| || CAAATCACAC AA........ .......... .......... .......... .......... 137 TTTTTATCAT CATTGTAAAA ATACATACAA ATCTGTAATA TTAACCCATG ATGCCAGTGT 1365 .......... .......... .......... .......... .......... .......... 137 GCCACTCAAC ATGACCAAAG TACATAAATA TTTAATTGTG TAGTTGTAAC GACCTGTTTA 1425 .......... .......... .......... .......... .......... .......... 137 GTCGTTTTGA GCAGCAGATT TTATTTCTGG AAAAACTGGC TGAGACGACG GATCCCACGA 1485 .......... .......... .......... .......... .......... .......... 137 CGGACCGTCA TGGGCACGAC GGACCGTCGA GGGGGTCTCA TTCTAAAACA CTTAGAATTC 1545 .......... .......... .......... .......... .......... .......... 137 TGAAATTTGG GTACTGAAAT CGACTCTCTG AACTTCGTGA CGAAGTGGCA GGACGGACCG 1605 .......... .......... .......... .......... .......... .......... 137 TCACAGGCAT GACGGGCCGT CACAGACCCT TGGTAAAAAA TCTAGTCTCT GAACTCTGAG 1665 .......... .......... .......... .......... .......... .......... 137 ACGGAAGCAG CAGGACGGAC CGTCGCAGGC ACGACGGCCC GTCACAGGCT GCGTAATCCC 1725 .......... .......... .......... .......... .......... .......... 137 AGGCTGAGTC GGATTTCTTT AAGTGTTTTA AGGGACGTTT TGGACTATTC CTGCTATAAT 1785 .......... .......... .......... .......... .......... .......... 137 TATAAATTTA GTGGGTTAAT GTTAATAATT TAACTACTTG AGGGTTAAAG GACATAACCT 1845 .......... .......... .......... .......... .......... .......... 137 TAAATTAATT AGTGGGTTAC TTTTGTCATC TTTTATACTT AATTATATGC TAATTAGGGT 1905 .......... .......... .......... .......... .......... .......... 137 AAAAGAAAAA GGGTTTGAAT AAGAAAGATA GAAAGAATAG AGAGAAGAGG GAGAAACGAT 1965 .......... .......... .......... .......... .......... .......... 137 CGAGAGAGAG AGGAACGAAG AAGAAAGCGA GGATTTTGAG GATTAGCTTG CTTGATCACA 2025 .......... .......... .......... .......... .......... .......... 137 ATTCTTCGGT GGAGGTAGGT TATGGTTTTT ATGCTATTCG TAGTAAACTC TTAATAGCGA 2085 .......... .......... .......... .......... .......... .......... 137 ATGATATGTA TTGGGTAGTG TTGTAAACCC TTCTATATGC TTAATTGTAT GCTTGCATGA 2145 .......... .......... .......... .......... .......... .......... 137 ATGTGATTAT ATGATTGTGA TAAAGTAAGC ATGATGAAGC TATTGAATCC TAAATCTTGA 2205 .......... .......... .......... .......... .......... .......... 137 AAAACCCTAA TCTACTTTGT TAATGATGAT GTCTTGGTAT AAAAGAAGGC TTGATGAACG 2265 .......... .......... .......... .......... .......... .......... 137 AAAGTAGTGA GATTAGGGGA TCGGGTGCCA CGTTCCGGTA CCAGGATAGT ATATGAGGAT 2325 .......... .......... .......... .......... .......... .......... 137 CGGAGTGTCA CGTTCCGACA CCAGGATAGT ATAGGGGATC GGGTGCCACG TTCCGATACC 2385 .......... .......... .......... .......... .......... .......... 137 AGGATAGTAT ATGAGGATCG GAGTGTCACG TTCCGACACC AGGATAGTAT ATGGATCGGG 2445 .......... .......... .......... .......... .......... .......... 137 TGCCACGTTC CGGTATCAGG ATAGTATATG AGGATCGGAG TGTCACGTTT CGACACCAGG 2505 .......... .......... .......... .......... .......... .......... 137 ATAGAATATG GATCGGGTGC CACGTTCCGG TACCAGAATA GTATATGAGG ATCGGAGTGT 2565 .......... .......... .......... .......... .......... .......... 137 CACGTTCCGA TACCAGGATA GAATATGGAT CGGGTGTCAC ATTTCGGCAC CAGGATTAGT 2625 .......... .......... .......... .......... .......... .......... 137 AAAGAGAATG AATCTTGAAA TATGTTAATA TACTCAATTT AATGAACCTA ATTCCCAAAT 2685 .......... .......... .......... .......... .......... .......... 137 GAGTATGATG GAGAGGCGTG AGTCCTCATT GATGTGCTTG GTGTTGTGAC CAAGGGTTAT 2745 .......... .......... .......... .......... .......... .......... 137 GGTAATTGTA AATGCCGCAT GTTGAGTTGT AGTTGATTTT ATAATATTAT CTGATATATG 2805 .......... .......... .......... .......... .......... .......... 137 TTGTTTTCTA TTTTGAGTTG GCCGATGATA TCTACTCAGT ACTTGTGTTT GTACTGACCC 2865 .......... .......... .......... .......... .......... .......... 137 CTACTTGTAT GTTTCTTTCT TTGTTAATTG TGGAGTACAG CAAACGCACC GTCGTCTTCA 2925 | || |||||| || ||| ||||| .......... .......... .......... .....GAGAG CAAACGTGCC GTCATCTTCG 162 ACTCAACCGC AACTCTAGCC AGACTCCATT ACACCAGATT TCAGGGTGAG CTAACGCTTC 2985 ||||||| | |||||||||| || || |||| | || ||| | | |||||| |||| | ||| ACTCAACAGT AACTCTAGCC AGTCTTCATT ATTCCGGATA TTAAGGTGAG CTAATGTTTC 222 TAGCTTGGAC TGGATCTCCT TCTTCATGTC TTGATGCCTT GAAGTTCCGG CATAGACTAG 3045 |||||||||| ||||||| | |||||||||| |||||| ||| |||||||||| ||| |||||| TAGCTTGGAC TGGATCTTCC TCTTCATGTC TTGATGTCTT GAAGTTCCGG CATGGACTAG 282 CTTTTTATTT ATTCTAGCTT TCTAG-ATAC TCTTAGAATT AGTGATTTGA GGATAGATGT 3104 |||| | | | ||| |||||| | ||| | || |||||| || ||| ||||| |||||||| CTTTCT-TGT ATTTTAGCTT TTTAGAACAC TCTTAG-TTT AGTACTTTGA TCATAGATGT 340 TCTTGTGATG ATGACTTCCA GATTTTGGGG ATAGTGATAA CTTTTGAGTT TAAGAA 3160 ||||||| || |||||||||| |||||||||| ||| | ||| | |||| || || || TCTTGTGGTG ATGACTTCCA GATTTTGGGG ATAATAATAG TTATTGATTT TATTAA 396 hqPGS_C06HBa0024L21.1-1+_SGN-E336814+ (2901 3160) ******************************************************************************** EST sequence 50 -strand 710 n (File: SGN-E392027-) 1 CAGCAAACGT GCCATCGTGT TCAACTCAAC AGTAATTCAA GCCAGTCTTA CTACATCGGA 61 AATTCAGGGT GAGCTAATGC TTCTAGCTTG GACTGGATCT TCTTCTTCAA GTCTTGATGC 121 CTTGAACTTC CGGCATGGAC TAGCTTCTTA TGTATTTTTA GCTTTTAGAC TACTCTTAGT 181 TTAGTCATTT GATCGTAGAT GTTCTTGTGG TGATGACTTC CAGATTTTGG GGAATAATAG 241 ATGTTGAATT TTAGAAGTTA ATGAATTGGT CTGTATTTAA TGAGTTTAAG TCTTCCACAT 301 TACTTTCTGT TGATATTATA TTGAAATGTT AAGGTTAGAT TGGTTGGTTC GCTCACATAG 361 GAGGGTAAGT GTGGGTGCCA GTCGCAACCC GGTTTTGGTC GTGACAAACT TGGTATCAGA 421 GCATTAGGTT CGTTGGTCTC ATCACACAAG AACGAGTCTA GTAGAGTCTT AAGGAACGGT 481 AGGGGGATGC CTTTACTTTT CCTTGAGAGG CTATAAGACT TTTGGAAAAT TCCATTCTTT 541 CTTCTTTCGT GCTATTACTT GGGTCCAATT GGTATCTAGG TGATACAAAT TGGTATCTGA 601 CCATCTTCAC TCTATTTCGC AGATGGTTAG AACTAGAGCA ACGACTACGC CAGCATCAAC 661 ACCAGCACCG GCGGGACAGG GTGCGACTGA GCCAGCCACT GGGGCTGTGG Predicted gene structure (within gDNA segment 1591 to 5131): Exon 1 2903 3547 ( 645 n); cDNA 1 644 ( 644 n); score: 0.852 MATCH C06HBa0024L21.1-1+ SGN-E392027- 0.852 645 0.908 C PGS_C06HBa0024L21.1-1+_SGN-E392027- (2903 3547) Alignment (genomic DNA sequence = upper lines): CAGCAAACGC ACCGTCGTCT TCAACTCAAC CGCAACTCTA GCCAGACTCC ATTACACCAG 2962 ||||||||| || |||| | |||||||||| | || || | ||||| || | |||| | | CAGCAAACGT GCCATCGTGT TCAACTCAAC AGTAATTCAA GCCAGTCT-T ACTACATCGG 59 -ATTTCAGGG TGAGCTAACG CTTCTAGCTT GGACTGGATC TCCTTCTTCA TGTCTTGATG 3021 | ||||||| |||||||| | |||||||||| |||||||||| | |||||||| ||||||||| AAATTCAGGG TGAGCTAATG CTTCTAGCTT GGACTGGATC TTCTTCTTCA AGTCTTGATG 119 CCTTGAAGTT CCGGCATAGA CTAGCTTTTT ATTTA-TTCT AGCTTTCTAG A-TACTCTTA 3079 ||||||| || ||||||| || ||||||| || || || || | |||||| ||| | |||||||| CCTTGAACTT CCGGCATGGA CTAGCTTCTT ATGTATTTTT AGCTTT-TAG ACTACTCTTA 178 GAATTAGTGA TTTGAGGATA GATGTTCTTG TGATGATGAC TTCCAGATTT TGGGGATAGT 3139 | ||||| | ||||| || |||||||||| || ||||||| |||||||||| |||||| | | G-TTTAGTCA TTTGATCGTA GATGTTCTTG TGGTGATGAC TTCCAGATTT TGGGGA-A-T 235 GATAACTTTT GAGTTTAAGA AGTT-ATTTA TT-TTTTATA -TTATTGAGT TTTAAGTCTT 3196 ||| | || || ||| ||| |||| || | || | | || ||| |||| |||||||||| AATAGATGTT GAATTTTAGA AGTTAATGAA TTGGTCTGTA TTTAATGAG- TTTAAGTCTT 294 CCGCATTTTA TTTTGTTTCT TATGT-TTGA AATGTTGGGG TTTAGATGGG TTGGTTCGCT 3255 || |||| || |||| | | | |||| |||||| || |||||| || |||||||||| CCACATTACT TTCTGTTGAT ATTATATTGA AATGTTAAGG -TTAGATTGG TTGGTTCGCT 353 CACATAGTAG GATAAGTGTG GGTGCCACTC GCGGCTCGTT TTGGGTCGTG ACAAACTTGG 3315 ||||||| || | |||||||| ||||||| || || | || | || ||||||| |||||||||| CACATAGGAG GGTAAGTGTG GGTGCCAGTC GCAACCCGGT TTTGGTCGTG ACAAACTTGG 413 TATCAAAGCA TTAGGTTCGT TGGTCTCATC ACACAAGAAC GAGTCTAGTA GAGTCTTAAG 3375 ||||| |||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATCAGAGCA TTAGGTTCGT TGGTCTCATC ACACAAGAAC GAGTCTAGTA GAGTCTTAAG 473 GAACGGTAGG GGGACGCCTT TACTTTTCTT TGAGAGGCTA TAAGACTTTA GGAAAATTCC 3435 |||||||||| |||| ||||| |||||||| | |||||||||| ||||||||| |||||||||| GAACGGTAGG GGGATGCCTT TACTTTTCCT TGAGAGGCTA TAAGACTTTT GGAAAATTCC 533 ATTCTTTCTT TTTTTCGTGC TATTACTTGG GTCCAATTGG TATCTAGGTG ATACAAATTG 3495 |||||||| | | |||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTCTTTC-T TCTTTCGTGC TATTACTTGG GTCCAATTGG TATCTAGGTG ATACAAATTG 592 GTATCTGACC ATCTTCGCTC TACTTCGTAG ATGGTTCGAA CTAGAGCAAC GA 3547 |||||||||| |||||| ||| || |||| || |||||| ||| |||||||||| || GTATCTGACC ATCTTCACTC TATTTCGCAG ATGGTTAGAA CTAGAGCAAC GA 644 hqPGS_C06HBa0024L21.1-1+_SGN-E392027- (2903 3547) ******************************************************************************** EST sequence 4 +strand 299 n (File: SGN-E373117+) 1 TCTTCTAGCT TGTCCAAATA CTGTCGTAAT TTTGGCAAAC GTACCGTCGT CTTCAACTCA 61 ACCGCAACTC TAGCCAGTCT TCATTACATC GGATTTCAGG GTGAGCTAAC GCTTCTAGCT 121 TGGACTGGAT CTTCTTCTTC ATGTCTTGAT GCCTTGAAGT TCCGGCATGG ACTAGCTGTT 181 TATGTATTTT AGCTTCTTAG ATACTCTTAG ATTTAGTAAT TTGAAGTAGA TGTTCTTGTG 241 ATGATGACTT CCAGATTTTG GGGATAATAA TAGTTGTTGA GTTTTTAGAA AAAAAAAAA Predicted gene structure (within gDNA segment 1893 to 4077): Exon 1 2906 3160 ( 255 n); cDNA 36 290 ( 255 n); score: 0.904 MATCH C06HBa0024L21.1-1+ SGN-E373117+ 0.904 255 0.853 C PGS_C06HBa0024L21.1-1+_SGN-E373117+ (2906 3160) Alignment (genomic DNA sequence = upper lines): CAAACGCACC GTCGTCTTCA ACTCAACCGC AACTCTAGCC AGACTCCATT ACACCAGATT 2965 |||||| ||| |||||||||| |||||||||| |||||||||| || || |||| ||| | |||| CAAACGTACC GTCGTCTTCA ACTCAACCGC AACTCTAGCC AGTCTTCATT ACATCGGATT 95 TCAGGGTGAG CTAACGCTTC TAGCTTGGAC TGGATCTCCT TCTTCATGTC TTGATGCCTT 3025 |||||||||| |||||||||| |||||||||| ||||||| || |||||||||| |||||||||| TCAGGGTGAG CTAACGCTTC TAGCTTGGAC TGGATCTTCT TCTTCATGTC TTGATGCCTT 155 GAAGTTCCGG CATAGACTAG CTTTTTATTT ATTCTAGCTT TCTAGATACT CTTAGAATTA 3085 |||||||||| ||| |||||| || ||||| | ||| |||||| |||||||| |||||| ||| GAAGTTCCGG CATGGACTAG CTGTTTATGT ATTTTAGCTT CTTAGATACT CTTAGATTTA 215 GTGATTTGAG GATAGATGTT CTTGTGATGA TGACTTCCAG ATTTTGGGGA TAGTGATAAC 3145 || |||||| | |||||||| |||||||||| |||||||||| |||||||||| || | ||| GTAATTTGAA G-TAGATGTT CTTGTGATGA TGACTTCCAG ATTTTGGGGA TAATAATAGT 274 TTTTGAG-TT TAAGAA 3160 | ||||| || | |||| TGTTGAGTTT TTAGAA 290 hqPGS_C06HBa0024L21.1-1+_SGN-E373117+ (2906 3160) ******************************************************************************** EST sequence 30 -strand 299 n (File: SGN-E373116-) 1 CTCTTCTAGC TTGTCCAAAT ACTGTCGTAA TTTTGGCAAA CGTACCGTCG TCTTCAACTC 61 AACCGCAACT CTAGCCAGTC TTCATTACAT CGGATTTCAG GGTGAGCTAA CGCTTCTAGC 121 TTGGACTGGA TCTTCTTCTT CATGTCTTGA TGCCTTGAAG TTCCGGCATG GACTAGCTGT 181 TTATGTATTT TAGCTTCTTA GATACTCTTA GATTTAGTAA TTTGAAGTAG ATGTTCTTGT 241 GATGATGACT TCCAGATTTT GGGGATAATA ATAGTTGTTG AGTTTTTAGA AAAAAAAAA Predicted gene structure (within gDNA segment 1873 to 4057): Exon 1 2906 3160 ( 255 n); cDNA 37 291 ( 255 n); score: 0.904 MATCH C06HBa0024L21.1-1+ SGN-E373116- 0.904 255 0.853 C PGS_C06HBa0024L21.1-1+_SGN-E373116- (2906 3160) Alignment (genomic DNA sequence = upper lines): CAAACGCACC GTCGTCTTCA ACTCAACCGC AACTCTAGCC AGACTCCATT ACACCAGATT 2965 |||||| ||| |||||||||| |||||||||| |||||||||| || || |||| ||| | |||| CAAACGTACC GTCGTCTTCA ACTCAACCGC AACTCTAGCC AGTCTTCATT ACATCGGATT 96 TCAGGGTGAG CTAACGCTTC TAGCTTGGAC TGGATCTCCT TCTTCATGTC TTGATGCCTT 3025 |||||||||| |||||||||| |||||||||| ||||||| || |||||||||| |||||||||| TCAGGGTGAG CTAACGCTTC TAGCTTGGAC TGGATCTTCT TCTTCATGTC TTGATGCCTT 156 GAAGTTCCGG CATAGACTAG CTTTTTATTT ATTCTAGCTT TCTAGATACT CTTAGAATTA 3085 |||||||||| ||| |||||| || ||||| | ||| |||||| |||||||| |||||| ||| GAAGTTCCGG CATGGACTAG CTGTTTATGT ATTTTAGCTT CTTAGATACT CTTAGATTTA 216 GTGATTTGAG GATAGATGTT CTTGTGATGA TGACTTCCAG ATTTTGGGGA TAGTGATAAC 3145 || |||||| | |||||||| |||||||||| |||||||||| |||||||||| || | ||| GTAATTTGAA G-TAGATGTT CTTGTGATGA TGACTTCCAG ATTTTGGGGA TAATAATAGT 275 TTTTGAG-TT TAAGAA 3160 | ||||| || | |||| TGTTGAGTTT TTAGAA 291 hqPGS_C06HBa0024L21.1-1+_SGN-E373116- (2906 3160) ******************************************************************************** EST sequence 12 +strand 219 n (File: SGN-E298638+) 1 TCATTACATC GGATTTCAGG GTGAGCTAAC GCTTCTAGCT TGGACTGGAT CTTCTTCTTC 61 ATGTCTTGAT GCCTTGAAGT TCCGGCATGG ACTAGCTGTT TATGTATTTT AGCTTCTTAG 121 ATACTCTTAG ATTTAGTAAT TTGAAGTACA TGTTCTTGTG ATGATGACTG CCAGATTTTG 181 GGGATAATAA TAGTTGTTGA GTTTTTAGAA AAAAAAAAA Predicted gene structure (within gDNA segment 2252 to 4077): Exon 1 2952 3160 ( 209 n); cDNA 2 210 ( 209 n); score: 0.888 MATCH C06HBa0024L21.1-1+ SGN-E298638+ 0.888 209 0.954 C PGS_C06HBa0024L21.1-1+_SGN-E298638+ (2952 3160) Alignment (genomic DNA sequence = upper lines): CATTACACCA GATTTCAGGG TGAGCTAACG CTTCTAGCTT GGACTGGATC TCCTTCTTCA 3011 ||||||| | |||||||||| |||||||||| |||||||||| |||||||||| | |||||||| CATTACATCG GATTTCAGGG TGAGCTAACG CTTCTAGCTT GGACTGGATC TTCTTCTTCA 61 TGTCTTGATG CCTTGAAGTT CCGGCATAGA CTAGCTTTTT ATTTATTCTA GCTTTCTAGA 3071 |||||||||| |||||||||| ||||||| || |||||| ||| || |||| || |||| |||| TGTCTTGATG CCTTGAAGTT CCGGCATGGA CTAGCTGTTT ATGTATTTTA GCTTCTTAGA 121 TACTCTTAGA ATTAGTGATT TGAGGATAGA TGTTCTTGTG ATGATGACTT CCAGATTTTG 3131 |||||||||| ||||| ||| ||| | || | |||||||||| ||||||||| |||||||||| TACTCTTAGA TTTAGTAATT TGAAG-TACA TGTTCTTGTG ATGATGACTG CCAGATTTTG 180 GGGATAGTGA TAACTTTTGA G-TTTAAGAA 3160 |||||| | | || | |||| | ||| |||| GGGATAATAA TAGTTGTTGA GTTTTTAGAA 210 hqPGS_C06HBa0024L21.1-1+_SGN-E298638+ (2952 3160) ******************************************************************************** EST sequence 15 +strand 620 n (File: SGN-E238551+) 1 ACGCCTTTTG CTTTATGAAA CTAAAAAATA AAAATTGAAG TTTTGAAACG ATAGAGGTTT 61 AAAATTTGAA AGTCTGCTTA GAGAGTTAAG GCTTAGAAAG TTTAACTAAG ACGGAATCTT 121 AAAAGATTAA TATCTCAAAT TTGCAAAGTT TGGCTAAGTA AATCGTGATA AAAGTTCAAA 181 TAAATTTGCA AAGGGTAAAA ATAAAAATAA TCAAATAAGT TAGTCGTTGG AAAACCGTAT 241 TTAACGGAGT GTCTTAGGTG CCTTAAACAC CTTCCTAAGA CGCTAATAAG AATCCCGAAT 301 CCTAAAAAAT ATTTTCAAAA CGACTTTTCT GTTTAAATTG TTTTGAGAAT GAGTTTTCTT 361 GATTTTTCTT AAAAATTAAG TGGCGACTCC TAAAGTCGAA AAATACTTTA AAATAAAACA 421 AACTCTTTTC GAAAAATCAC CTTTTTTCGA TAAAACAAAG CTTCTAGCTT GGACTGGATC 481 TTCTTCTTCA TGTCTTGATG CCTTGAAGTT CCGGCATGGA CTAGCTGTTT ATGTATTTTA 541 GCTTCTTAGA TACTCTTAGA TTTAGTAATT CGAAGTAGAT GTTCTTGTGA TGATAACTTC 601 CAGATTTTGG GAAATAATAG Predicted gene structure (within gDNA segment 1 to 3833): Exon 1 381 399 ( 19 n); cDNA 401 418 ( 18 n); score: 0.895 Intron 1 400 824 ( 425 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0) Exon 2 825 854 ( 30 n); cDNA 419 448 ( 30 n); score: 0.700 Intron 2 855 1902 (1048 n); Pd: 0.000 (s: 0), Pa: 0.966 (s: 0) Exon 3 1903 1913 ( 11 n); cDNA 449 459 ( 11 n); score: 0.818 Intron 3 1914 2980 (1067 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.98) Exon 4 2981 3143 ( 163 n); cDNA 460 619 ( 160 n); score: 0.896 MATCH C06HBa0024L21.1-1+ SGN-E238551+ 0.896 223 0.360 C PGS_C06HBa0024L21.1-1+_SGN-E238551+ (381 399,825 854,1903 1913,2981 3143) Alignment (genomic DNA sequence = upper lines): AAAAACTTTA ATAATAAAAA TTATAACATC TTATCAGTTA TCCTTAATGA CATAAGTATA 440 ||| |||||| | ||||||| AAATACTTTA A-AATAAAA. .......... .......... .......... .......... 418 AGTTAATGAC TATAAAAATA TATATCAAGA TCTGTAACAT CAGAAATAAT GTCAGTGAAC 500 .......... .......... .......... .......... .......... .......... 418 CACTCAACAG GACCCAAATA CACATATATT TAATTGTGCG GAAGAAGAAA AAGTAGTTCA 560 .......... .......... .......... .......... .......... .......... 418 TAATTTTTGT TATTTGAAAA TGAGAGGAAA TCTATCTATT TATAGACGAC AAAGGGTAGT 620 .......... .......... .......... .......... .......... .......... 418 TGAACAAATG TTTATTGTAC CTTATCGGAA AGGTTACAAC TATGTAGAAA AGATGCAACC 680 .......... .......... .......... .......... .......... .......... 418 CTTCCGAAAG GTCGCTACCT TTCATAAAAG TCACAACTCT TCATAAAAGT CGCAACTCTT 740 .......... .......... .......... .......... .......... .......... 418 CATTAAAGTC GCAACTTTTC ATAAAAGTCA CAACTTTTTC TAAAAGTCAC AACTCTTCAT 800 .......... .......... .......... .......... .......... .......... 418 TAAAGTCTCA ATTTTTCACA AAGTCAAAAC TTTTTATATA AATCACAACT TTTCATGAAA 860 |||| |||| | | |||||| | |||| .......... .......... ....CAAACT CTTTTCGAAA AATCACCTTT TTTC...... 448 GGGAGAGCTA ATTTTGAAAA CCAATAAATG AATAGGGAAT CATGATTTTT GGTGGCACCA 920 .......... .......... .......... .......... .......... .......... 448 CGTAGGAGGA CCTTGGGTTC CTCATGCAGA AATTTCATAT CATAGAATTT ATATAATAAT 980 .......... .......... .......... .......... .......... .......... 448 ACTTAAAACA TATCCATCAT TAAAATTAAA AATTATATTA TATTACATAA AAGATAACAT 1040 .......... .......... .......... .......... .......... .......... 448 CGTATCAAAT ATTAATAATG TAAAGAATTA TATTATATTA CATAAAAGAT AACATCGTAT 1100 .......... .......... .......... .......... .......... .......... 448 CAAATATTAA TAATGTAAAG AATAATAAAA ATTATTACAT TGTATCATTT TATCCTTAAT 1160 .......... .......... .......... .......... .......... .......... 448 AACATAAACA ATAATCAACG ATTGTAAGAG TACATACCAG TATCTGTAAC ATAAATCATG 1220 .......... .......... .......... .......... .......... .......... 448 GTATCAATGA GCTGCTCAAC ATGAGCAAAG TACACAAGTA TATATGTGTA TAGTAATAGT 1280 .......... .......... .......... .......... .......... .......... 448 AGTAGTAGAA GAAGAAGTTT AGAATTTTTT ATCATCATTG TAAAAATACA TACAAATCTG 1340 .......... .......... .......... .......... .......... .......... 448 TAATATTAAC CCATGATGCC AGTGTGCCAC TCAACATGAC CAAAGTACAT AAATATTTAA 1400 .......... .......... .......... .......... .......... .......... 448 TTGTGTAGTT GTAACGACCT GTTTAGTCGT TTTGAGCAGC AGATTTTATT TCTGGAAAAA 1460 .......... .......... .......... .......... .......... .......... 448 CTGGCTGAGA CGACGGATCC CACGACGGAC CGTCATGGGC ACGACGGACC GTCGAGGGGG 1520 .......... .......... .......... .......... .......... .......... 448 TCTCATTCTA AAACACTTAG AATTCTGAAA TTTGGGTACT GAAATCGACT CTCTGAACTT 1580 .......... .......... .......... .......... .......... .......... 448 CGTGACGAAG TGGCAGGACG GACCGTCACA GGCATGACGG GCCGTCACAG ACCCTTGGTA 1640 .......... .......... .......... .......... .......... .......... 448 AAAAATCTAG TCTCTGAACT CTGAGACGGA AGCAGCAGGA CGGACCGTCG CAGGCACGAC 1700 .......... .......... .......... .......... .......... .......... 448 GGCCCGTCAC AGGCTGCGTA ATCCCAGGCT GAGTCGGATT TCTTTAAGTG TTTTAAGGGA 1760 .......... .......... .......... .......... .......... .......... 448 CGTTTTGGAC TATTCCTGCT ATAATTATAA ATTTAGTGGG TTAATGTTAA TAATTTAACT 1820 .......... .......... .......... .......... .......... .......... 448 ACTTGAGGGT TAAAGGACAT AACCTTAAAT TAATTAGTGG GTTACTTTTG TCATCTTTTA 1880 .......... .......... .......... .......... .......... .......... 448 TACTTAATTA TATGCTAATT AGGGTAAAAG AAAAAGGGTT TGAATAAGAA AGATAGAAAG 1940 | ||||| ||| .......... .......... ..GATAAAAC AAA....... .......... .......... 459 AATAGAGAGA AGAGGGAGAA ACGATCGAGA GAGAGAGGAA CGAAGAAGAA AGCGAGGATT 2000 .......... .......... .......... .......... .......... .......... 459 TTGAGGATTA GCTTGCTTGA TCACAATTCT TCGGTGGAGG TAGGTTATGG TTTTTATGCT 2060 .......... .......... .......... .......... .......... .......... 459 ATTCGTAGTA AACTCTTAAT AGCGAATGAT ATGTATTGGG TAGTGTTGTA AACCCTTCTA 2120 .......... .......... .......... .......... .......... .......... 459 TATGCTTAAT TGTATGCTTG CATGAATGTG ATTATATGAT TGTGATAAAG TAAGCATGAT 2180 .......... .......... .......... .......... .......... .......... 459 GAAGCTATTG AATCCTAAAT CTTGAAAAAC CCTAATCTAC TTTGTTAATG ATGATGTCTT 2240 .......... .......... .......... .......... .......... .......... 459 GGTATAAAAG AAGGCTTGAT GAACGAAAGT AGTGAGATTA GGGGATCGGG TGCCACGTTC 2300 .......... .......... .......... .......... .......... .......... 459 CGGTACCAGG ATAGTATATG AGGATCGGAG TGTCACGTTC CGACACCAGG ATAGTATAGG 2360 .......... .......... .......... .......... .......... .......... 459 GGATCGGGTG CCACGTTCCG ATACCAGGAT AGTATATGAG GATCGGAGTG TCACGTTCCG 2420 .......... .......... .......... .......... .......... .......... 459 ACACCAGGAT AGTATATGGA TCGGGTGCCA CGTTCCGGTA TCAGGATAGT ATATGAGGAT 2480 .......... .......... .......... .......... .......... .......... 459 CGGAGTGTCA CGTTTCGACA CCAGGATAGA ATATGGATCG GGTGCCACGT TCCGGTACCA 2540 .......... .......... .......... .......... .......... .......... 459 GAATAGTATA TGAGGATCGG AGTGTCACGT TCCGATACCA GGATAGAATA TGGATCGGGT 2600 .......... .......... .......... .......... .......... .......... 459 GTCACATTTC GGCACCAGGA TTAGTAAAGA GAATGAATCT TGAAATATGT TAATATACTC 2660 .......... .......... .......... .......... .......... .......... 459 AATTTAATGA ACCTAATTCC CAAATGAGTA TGATGGAGAG GCGTGAGTCC TCATTGATGT 2720 .......... .......... .......... .......... .......... .......... 459 GCTTGGTGTT GTGACCAAGG GTTATGGTAA TTGTAAATGC CGCATGTTGA GTTGTAGTTG 2780 .......... .......... .......... .......... .......... .......... 459 ATTTTATAAT ATTATCTGAT ATATGTTGTT TTCTATTTTG AGTTGGCCGA TGATATCTAC 2840 .......... .......... .......... .......... .......... .......... 459 TCAGTACTTG TGTTTGTACT GACCCCTACT TGTATGTTTC TTTCTTTGTT AATTGTGGAG 2900 .......... .......... .......... .......... .......... .......... 459 TACAGCAAAC GCACCGTCGT CTTCAACTCA ACCGCAACTC TAGCCAGACT CCATTACACC 2960 .......... .......... .......... .......... .......... .......... 459 AGATTTCAGG GTGAGCTAAC GCTTCTAGCT TGGACTGGAT CTCCTTCTTC ATGTCTTGAT 3020 |||||||||| |||||||||| || ||||||| |||||||||| .......... .......... GCTTCTAGCT TGGACTGGAT CTTCTTCTTC ATGTCTTGAT 499 GCCTTGAAGT TCCGGCATAG ACTAGCTTTT TATTTATTCT AGCTTTCTAG ATACTCTTAG 3080 |||||||||| |||||||| | ||||||| || ||| |||| | ||||| ||| |||||||||| GCCTTGAAGT TCCGGCATGG ACTAGCTGTT TATGTATTTT AGCTTCTTAG ATACTCTTAG 559 AATTAGTGAT TTGAGGATAG ATGTTCTTGT GATGATGACT TCCAGATTTT GGGGATAGTG 3140 | ||||| || | || | ||| |||||||||| |||||| ||| |||||||||| |||| | | ATTTAGTAAT TCGAAG-TAG ATGTTCTTGT GATGATAACT TCCAGATTTT -GGGA-AATA 616 ATA 3143 ||| ATA 619 hqPGS_C06HBa0024L21.1-1+_SGN-E238551+ (2981 3143) ******************************************************************************** EST sequence 7 +strand 402 n (File: SGN-E352844+) 1 GGAGTGTCTT AGGTGCCTTA AACACCTTCC TAAGACGCTA ATAAGAATCC CGAATCCTAA 61 AAAATATTTT CAAAACGACT TTTCTGTTTA AATTGTTTTG AGAATGAGTT TTCTTGATTT 121 TTCTTAAAAA TTAAGTGGCG ACTCCTAAAG TCGAAAAATA CTTTAAAATA AAACAAACTC 181 TTTTCGAAAA ATCACCTTTT TTCGATAAAA CAAAGCTTCT AGCTTGGACT GGATCTTCTT 241 CTTCATGTCT TGATGCCTTG AAGTTCCGGC ATGGACTAGC TGTTTATGTA TTTTAGCTTC 301 TTAGATACTC TTAGATTTAG TAATTCGAAG TAGATGTTCT TGTGATGATA ACTTCCAGAT 361 TTTGGGAAAT AATAGTTATT GAATTGGTTT TTATAAAAAA AA Predicted gene structure (within gDNA segment 1 to 4103): Exon 1 381 399 ( 19 n); cDNA 156 173 ( 18 n); score: 0.895 Intron 1 400 824 ( 425 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0) Exon 2 825 854 ( 30 n); cDNA 174 203 ( 30 n); score: 0.700 Intron 2 855 1902 (1048 n); Pd: 0.000 (s: 0), Pa: 0.966 (s: 0) Exon 3 1903 1913 ( 11 n); cDNA 204 214 ( 11 n); score: 0.818 Intron 3 1914 2980 (1067 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.98) Exon 4 2981 3133 ( 153 n); cDNA 215 366 ( 152 n); score: 0.915 MATCH C06HBa0024L21.1-1+ SGN-E352844+ 0.915 213 0.530 C PGS_C06HBa0024L21.1-1+_SGN-E352844+ (381 399,825 854,1903 1913,2981 3133) Alignment (genomic DNA sequence = upper lines): AAAAACTTTA ATAATAAAAA TTATAACATC TTATCAGTTA TCCTTAATGA CATAAGTATA 440 ||| |||||| | ||||||| AAATACTTTA A-AATAAAA. .......... .......... .......... .......... 173 AGTTAATGAC TATAAAAATA TATATCAAGA TCTGTAACAT CAGAAATAAT GTCAGTGAAC 500 .......... .......... .......... .......... .......... .......... 173 CACTCAACAG GACCCAAATA CACATATATT TAATTGTGCG GAAGAAGAAA AAGTAGTTCA 560 .......... .......... .......... .......... .......... .......... 173 TAATTTTTGT TATTTGAAAA TGAGAGGAAA TCTATCTATT TATAGACGAC AAAGGGTAGT 620 .......... .......... .......... .......... .......... .......... 173 TGAACAAATG TTTATTGTAC CTTATCGGAA AGGTTACAAC TATGTAGAAA AGATGCAACC 680 .......... .......... .......... .......... .......... .......... 173 CTTCCGAAAG GTCGCTACCT TTCATAAAAG TCACAACTCT TCATAAAAGT CGCAACTCTT 740 .......... .......... .......... .......... .......... .......... 173 CATTAAAGTC GCAACTTTTC ATAAAAGTCA CAACTTTTTC TAAAAGTCAC AACTCTTCAT 800 .......... .......... .......... .......... .......... .......... 173 TAAAGTCTCA ATTTTTCACA AAGTCAAAAC TTTTTATATA AATCACAACT TTTCATGAAA 860 |||| |||| | | |||||| | |||| .......... .......... ....CAAACT CTTTTCGAAA AATCACCTTT TTTC...... 203 GGGAGAGCTA ATTTTGAAAA CCAATAAATG AATAGGGAAT CATGATTTTT GGTGGCACCA 920 .......... .......... .......... .......... .......... .......... 203 CGTAGGAGGA CCTTGGGTTC CTCATGCAGA AATTTCATAT CATAGAATTT ATATAATAAT 980 .......... .......... .......... .......... .......... .......... 203 ACTTAAAACA TATCCATCAT TAAAATTAAA AATTATATTA TATTACATAA AAGATAACAT 1040 .......... .......... .......... .......... .......... .......... 203 CGTATCAAAT ATTAATAATG TAAAGAATTA TATTATATTA CATAAAAGAT AACATCGTAT 1100 .......... .......... .......... .......... .......... .......... 203 CAAATATTAA TAATGTAAAG AATAATAAAA ATTATTACAT TGTATCATTT TATCCTTAAT 1160 .......... .......... .......... .......... .......... .......... 203 AACATAAACA ATAATCAACG ATTGTAAGAG TACATACCAG TATCTGTAAC ATAAATCATG 1220 .......... .......... .......... .......... .......... .......... 203 GTATCAATGA GCTGCTCAAC ATGAGCAAAG TACACAAGTA TATATGTGTA TAGTAATAGT 1280 .......... .......... .......... .......... .......... .......... 203 AGTAGTAGAA GAAGAAGTTT AGAATTTTTT ATCATCATTG TAAAAATACA TACAAATCTG 1340 .......... .......... .......... .......... .......... .......... 203 TAATATTAAC CCATGATGCC AGTGTGCCAC TCAACATGAC CAAAGTACAT AAATATTTAA 1400 .......... .......... .......... .......... .......... .......... 203 TTGTGTAGTT GTAACGACCT GTTTAGTCGT TTTGAGCAGC AGATTTTATT TCTGGAAAAA 1460 .......... .......... .......... .......... .......... .......... 203 CTGGCTGAGA CGACGGATCC CACGACGGAC CGTCATGGGC ACGACGGACC GTCGAGGGGG 1520 .......... .......... .......... .......... .......... .......... 203 TCTCATTCTA AAACACTTAG AATTCTGAAA TTTGGGTACT GAAATCGACT CTCTGAACTT 1580 .......... .......... .......... .......... .......... .......... 203 CGTGACGAAG TGGCAGGACG GACCGTCACA GGCATGACGG GCCGTCACAG ACCCTTGGTA 1640 .......... .......... .......... .......... .......... .......... 203 AAAAATCTAG TCTCTGAACT CTGAGACGGA AGCAGCAGGA CGGACCGTCG CAGGCACGAC 1700 .......... .......... .......... .......... .......... .......... 203 GGCCCGTCAC AGGCTGCGTA ATCCCAGGCT GAGTCGGATT TCTTTAAGTG TTTTAAGGGA 1760 .......... .......... .......... .......... .......... .......... 203 CGTTTTGGAC TATTCCTGCT ATAATTATAA ATTTAGTGGG TTAATGTTAA TAATTTAACT 1820 .......... .......... .......... .......... .......... .......... 203 ACTTGAGGGT TAAAGGACAT AACCTTAAAT TAATTAGTGG GTTACTTTTG TCATCTTTTA 1880 .......... .......... .......... .......... .......... .......... 203 TACTTAATTA TATGCTAATT AGGGTAAAAG AAAAAGGGTT TGAATAAGAA AGATAGAAAG 1940 | ||||| ||| .......... .......... ..GATAAAAC AAA....... .......... .......... 214 AATAGAGAGA AGAGGGAGAA ACGATCGAGA GAGAGAGGAA CGAAGAAGAA AGCGAGGATT 2000 .......... .......... .......... .......... .......... .......... 214 TTGAGGATTA GCTTGCTTGA TCACAATTCT TCGGTGGAGG TAGGTTATGG TTTTTATGCT 2060 .......... .......... .......... .......... .......... .......... 214 ATTCGTAGTA AACTCTTAAT AGCGAATGAT ATGTATTGGG TAGTGTTGTA AACCCTTCTA 2120 .......... .......... .......... .......... .......... .......... 214 TATGCTTAAT TGTATGCTTG CATGAATGTG ATTATATGAT TGTGATAAAG TAAGCATGAT 2180 .......... .......... .......... .......... .......... .......... 214 GAAGCTATTG AATCCTAAAT CTTGAAAAAC CCTAATCTAC TTTGTTAATG ATGATGTCTT 2240 .......... .......... .......... .......... .......... .......... 214 GGTATAAAAG AAGGCTTGAT GAACGAAAGT AGTGAGATTA GGGGATCGGG TGCCACGTTC 2300 .......... .......... .......... .......... .......... .......... 214 CGGTACCAGG ATAGTATATG AGGATCGGAG TGTCACGTTC CGACACCAGG ATAGTATAGG 2360 .......... .......... .......... .......... .......... .......... 214 GGATCGGGTG CCACGTTCCG ATACCAGGAT AGTATATGAG GATCGGAGTG TCACGTTCCG 2420 .......... .......... .......... .......... .......... .......... 214 ACACCAGGAT AGTATATGGA TCGGGTGCCA CGTTCCGGTA TCAGGATAGT ATATGAGGAT 2480 .......... .......... .......... .......... .......... .......... 214 CGGAGTGTCA CGTTTCGACA CCAGGATAGA ATATGGATCG GGTGCCACGT TCCGGTACCA 2540 .......... .......... .......... .......... .......... .......... 214 GAATAGTATA TGAGGATCGG AGTGTCACGT TCCGATACCA GGATAGAATA TGGATCGGGT 2600 .......... .......... .......... .......... .......... .......... 214 GTCACATTTC GGCACCAGGA TTAGTAAAGA GAATGAATCT TGAAATATGT TAATATACTC 2660 .......... .......... .......... .......... .......... .......... 214 AATTTAATGA ACCTAATTCC CAAATGAGTA TGATGGAGAG GCGTGAGTCC TCATTGATGT 2720 .......... .......... .......... .......... .......... .......... 214 GCTTGGTGTT GTGACCAAGG GTTATGGTAA TTGTAAATGC CGCATGTTGA GTTGTAGTTG 2780 .......... .......... .......... .......... .......... .......... 214 ATTTTATAAT ATTATCTGAT ATATGTTGTT TTCTATTTTG AGTTGGCCGA TGATATCTAC 2840 .......... .......... .......... .......... .......... .......... 214 TCAGTACTTG TGTTTGTACT GACCCCTACT TGTATGTTTC TTTCTTTGTT AATTGTGGAG 2900 .......... .......... .......... .......... .......... .......... 214 TACAGCAAAC GCACCGTCGT CTTCAACTCA ACCGCAACTC TAGCCAGACT CCATTACACC 2960 .......... .......... .......... .......... .......... .......... 214 AGATTTCAGG GTGAGCTAAC GCTTCTAGCT TGGACTGGAT CTCCTTCTTC ATGTCTTGAT 3020 |||||||||| |||||||||| || ||||||| |||||||||| .......... .......... GCTTCTAGCT TGGACTGGAT CTTCTTCTTC ATGTCTTGAT 254 GCCTTGAAGT TCCGGCATAG ACTAGCTTTT TATTTATTCT AGCTTTCTAG ATACTCTTAG 3080 |||||||||| |||||||| | ||||||| || ||| |||| | ||||| ||| |||||||||| GCCTTGAAGT TCCGGCATGG ACTAGCTGTT TATGTATTTT AGCTTCTTAG ATACTCTTAG 314 AATTAGTGAT TTGAGGATAG ATGTTCTTGT GATGATGACT TCCAGATTTT GGG 3133 | ||||| || | || | ||| |||||||||| |||||| ||| |||||||||| ||| ATTTAGTAAT TCGAAG-TAG ATGTTCTTGT GATGATAACT TCCAGATTTT GGG 366 hqPGS_C06HBa0024L21.1-1+_SGN-E352844+ (2981 3133) ******************************************************************************** EST sequence 17 +strand 666 n (File: SGN-E368629+) 1 ACGCCTTTTG CTTTATGAAA CTAAAAAATA AAAATTGAAG TTTTGAAACG ATAGAGGTTT 61 AAAATTTGAA AGTCTGCTTA GAGAGTTAAG GCTTAGAAAG TTTAACTAAG ACGGAATCTT 121 AAAAGATTAA TATCTCAAAT TTGCAAAGTT TGGCTAAGTA AATCGTGATA AAAGTTCAAA 181 TAAATTTGCA AAGGGTAAAA ATAAAAATAA TCAAATAAGT TAGTCGTTGG AAAACCGTAT 241 TTAACGGAGT GTCTTAGGTG CCTTAAACAC CTTCCTAAGA CGCTAATAAG AATCCCGAAT 301 CCTAAAAAAT ATTTTCAAAA CGACTTTTCT GTTTAAATTG TTTTGAGAAT GAGTTTTCTT 361 GATTTTTCTT AAAAATTAAG TGGCGACTCC TAAAGTCGAA AAATACTTTA AAATAAAACA 421 AACTCTTTTC GAAAAATCAC CTTTTTTCGA TAAAACAAAG CTTCTAGCTT GGACTGGATC 481 TTCTTCTTTA TGTCTTGATG CCTTGAAGTT TCGGCATGGA CTAACTGTGT TATGTATTTT 541 AGGCTCTTAG ATACTTCTAG ATTTAGTAAT TCGAAGTAGA TGTTCTTGTG ATGATAACTT 601 CCAGATTTTG GGAAATAATA GTTATTGAAT TGGTTTTTAT AAAAAAAAAA AAAAAAAAAA 661 AAAAAA Predicted gene structure (within gDNA segment 1 to 4283): Exon 1 381 399 ( 19 n); cDNA 401 418 ( 18 n); score: 0.895 Intron 1 400 824 ( 425 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0) Exon 2 825 854 ( 30 n); cDNA 419 448 ( 30 n); score: 0.700 Intron 2 855 1902 (1048 n); Pd: 0.000 (s: 0), Pa: 0.966 (s: 0) Exon 3 1903 1913 ( 11 n); cDNA 449 459 ( 11 n); score: 0.818 Intron 3 1914 2980 (1067 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.96) Exon 4 2981 3133 ( 153 n); cDNA 460 612 ( 153 n); score: 0.853 PPA cDNA 639 666 MATCH C06HBa0024L21.1-1+ SGN-E368629+ 0.853 213 0.320 C PGS_C06HBa0024L21.1-1+_SGN-E368629+ (381 399,825 854,1903 1913,2981 3133) Alignment (genomic DNA sequence = upper lines): AAAAACTTTA ATAATAAAAA TTATAACATC TTATCAGTTA TCCTTAATGA CATAAGTATA 440 ||| |||||| | ||||||| AAATACTTTA A-AATAAAA. .......... .......... .......... .......... 418 AGTTAATGAC TATAAAAATA TATATCAAGA TCTGTAACAT CAGAAATAAT GTCAGTGAAC 500 .......... .......... .......... .......... .......... .......... 418 CACTCAACAG GACCCAAATA CACATATATT TAATTGTGCG GAAGAAGAAA AAGTAGTTCA 560 .......... .......... .......... .......... .......... .......... 418 TAATTTTTGT TATTTGAAAA TGAGAGGAAA TCTATCTATT TATAGACGAC AAAGGGTAGT 620 .......... .......... .......... .......... .......... .......... 418 TGAACAAATG TTTATTGTAC CTTATCGGAA AGGTTACAAC TATGTAGAAA AGATGCAACC 680 .......... .......... .......... .......... .......... .......... 418 CTTCCGAAAG GTCGCTACCT TTCATAAAAG TCACAACTCT TCATAAAAGT CGCAACTCTT 740 .......... .......... .......... .......... .......... .......... 418 CATTAAAGTC GCAACTTTTC ATAAAAGTCA CAACTTTTTC TAAAAGTCAC AACTCTTCAT 800 .......... .......... .......... .......... .......... .......... 418 TAAAGTCTCA ATTTTTCACA AAGTCAAAAC TTTTTATATA AATCACAACT TTTCATGAAA 860 |||| |||| | | |||||| | |||| .......... .......... ....CAAACT CTTTTCGAAA AATCACCTTT TTTC...... 448 GGGAGAGCTA ATTTTGAAAA CCAATAAATG AATAGGGAAT CATGATTTTT GGTGGCACCA 920 .......... .......... .......... .......... .......... .......... 448 CGTAGGAGGA CCTTGGGTTC CTCATGCAGA AATTTCATAT CATAGAATTT ATATAATAAT 980 .......... .......... .......... .......... .......... .......... 448 ACTTAAAACA TATCCATCAT TAAAATTAAA AATTATATTA TATTACATAA AAGATAACAT 1040 .......... .......... .......... .......... .......... .......... 448 CGTATCAAAT ATTAATAATG TAAAGAATTA TATTATATTA CATAAAAGAT AACATCGTAT 1100 .......... .......... .......... .......... .......... .......... 448 CAAATATTAA TAATGTAAAG AATAATAAAA ATTATTACAT TGTATCATTT TATCCTTAAT 1160 .......... .......... .......... .......... .......... .......... 448 AACATAAACA ATAATCAACG ATTGTAAGAG TACATACCAG TATCTGTAAC ATAAATCATG 1220 .......... .......... .......... .......... .......... .......... 448 GTATCAATGA GCTGCTCAAC ATGAGCAAAG TACACAAGTA TATATGTGTA TAGTAATAGT 1280 .......... .......... .......... .......... .......... .......... 448 AGTAGTAGAA GAAGAAGTTT AGAATTTTTT ATCATCATTG TAAAAATACA TACAAATCTG 1340 .......... .......... .......... .......... .......... .......... 448 TAATATTAAC CCATGATGCC AGTGTGCCAC TCAACATGAC CAAAGTACAT AAATATTTAA 1400 .......... .......... .......... .......... .......... .......... 448 TTGTGTAGTT GTAACGACCT GTTTAGTCGT TTTGAGCAGC AGATTTTATT TCTGGAAAAA 1460 .......... .......... .......... .......... .......... .......... 448 CTGGCTGAGA CGACGGATCC CACGACGGAC CGTCATGGGC ACGACGGACC GTCGAGGGGG 1520 .......... .......... .......... .......... .......... .......... 448 TCTCATTCTA AAACACTTAG AATTCTGAAA TTTGGGTACT GAAATCGACT CTCTGAACTT 1580 .......... .......... .......... .......... .......... .......... 448 CGTGACGAAG TGGCAGGACG GACCGTCACA GGCATGACGG GCCGTCACAG ACCCTTGGTA 1640 .......... .......... .......... .......... .......... .......... 448 AAAAATCTAG TCTCTGAACT CTGAGACGGA AGCAGCAGGA CGGACCGTCG CAGGCACGAC 1700 .......... .......... .......... .......... .......... .......... 448 GGCCCGTCAC AGGCTGCGTA ATCCCAGGCT GAGTCGGATT TCTTTAAGTG TTTTAAGGGA 1760 .......... .......... .......... .......... .......... .......... 448 CGTTTTGGAC TATTCCTGCT ATAATTATAA ATTTAGTGGG TTAATGTTAA TAATTTAACT 1820 .......... .......... .......... .......... .......... .......... 448 ACTTGAGGGT TAAAGGACAT AACCTTAAAT TAATTAGTGG GTTACTTTTG TCATCTTTTA 1880 .......... .......... .......... .......... .......... .......... 448 TACTTAATTA TATGCTAATT AGGGTAAAAG AAAAAGGGTT TGAATAAGAA AGATAGAAAG 1940 | ||||| ||| .......... .......... ..GATAAAAC AAA....... .......... .......... 459 AATAGAGAGA AGAGGGAGAA ACGATCGAGA GAGAGAGGAA CGAAGAAGAA AGCGAGGATT 2000 .......... .......... .......... .......... .......... .......... 459 TTGAGGATTA GCTTGCTTGA TCACAATTCT TCGGTGGAGG TAGGTTATGG TTTTTATGCT 2060 .......... .......... .......... .......... .......... .......... 459 ATTCGTAGTA AACTCTTAAT AGCGAATGAT ATGTATTGGG TAGTGTTGTA AACCCTTCTA 2120 .......... .......... .......... .......... .......... .......... 459 TATGCTTAAT TGTATGCTTG CATGAATGTG ATTATATGAT TGTGATAAAG TAAGCATGAT 2180 .......... .......... .......... .......... .......... .......... 459 GAAGCTATTG AATCCTAAAT CTTGAAAAAC CCTAATCTAC TTTGTTAATG ATGATGTCTT 2240 .......... .......... .......... .......... .......... .......... 459 GGTATAAAAG AAGGCTTGAT GAACGAAAGT AGTGAGATTA GGGGATCGGG TGCCACGTTC 2300 .......... .......... .......... .......... .......... .......... 459 CGGTACCAGG ATAGTATATG AGGATCGGAG TGTCACGTTC CGACACCAGG ATAGTATAGG 2360 .......... .......... .......... .......... .......... .......... 459 GGATCGGGTG CCACGTTCCG ATACCAGGAT AGTATATGAG GATCGGAGTG TCACGTTCCG 2420 .......... .......... .......... .......... .......... .......... 459 ACACCAGGAT AGTATATGGA TCGGGTGCCA CGTTCCGGTA TCAGGATAGT ATATGAGGAT 2480 .......... .......... .......... .......... .......... .......... 459 CGGAGTGTCA CGTTTCGACA CCAGGATAGA ATATGGATCG GGTGCCACGT TCCGGTACCA 2540 .......... .......... .......... .......... .......... .......... 459 GAATAGTATA TGAGGATCGG AGTGTCACGT TCCGATACCA GGATAGAATA TGGATCGGGT 2600 .......... .......... .......... .......... .......... .......... 459 GTCACATTTC GGCACCAGGA TTAGTAAAGA GAATGAATCT TGAAATATGT TAATATACTC 2660 .......... .......... .......... .......... .......... .......... 459 AATTTAATGA ACCTAATTCC CAAATGAGTA TGATGGAGAG GCGTGAGTCC TCATTGATGT 2720 .......... .......... .......... .......... .......... .......... 459 GCTTGGTGTT GTGACCAAGG GTTATGGTAA TTGTAAATGC CGCATGTTGA GTTGTAGTTG 2780 .......... .......... .......... .......... .......... .......... 459 ATTTTATAAT ATTATCTGAT ATATGTTGTT TTCTATTTTG AGTTGGCCGA TGATATCTAC 2840 .......... .......... .......... .......... .......... .......... 459 TCAGTACTTG TGTTTGTACT GACCCCTACT TGTATGTTTC TTTCTTTGTT AATTGTGGAG 2900 .......... .......... .......... .......... .......... .......... 459 TACAGCAAAC GCACCGTCGT CTTCAACTCA ACCGCAACTC TAGCCAGACT CCATTACACC 2960 .......... .......... .......... .......... .......... .......... 459 AGATTTCAGG GTGAGCTAAC GCTTCTAGCT TGGACTGGAT CTCCTTCTTC ATGTCTTGAT 3020 |||||||||| |||||||||| || |||||| |||||||||| .......... .......... GCTTCTAGCT TGGACTGGAT CTTCTTCTTT ATGTCTTGAT 499 GCCTTGAAGT TCCGGCATAG ACTAGCT-TT TTATTTATTC TAGCTTTCTA GATACTCTTA 3079 |||||||||| | |||||| | |||| || | |||| |||| ||| | || |||||| || GCCTTGAAGT TTCGGCATGG ACTAACTGTG TTATGTATTT TAGGCTCTTA GATACTTCTA 559 GAATTAGTGA TTTGAGGATA GATGTTCTTG TGATGATGAC TTCCAGATTT TGGG 3133 || ||||| | || || | || |||||||||| ||||||| || |||||||||| |||| GATTTAGTAA TTCGAAG-TA GATGTTCTTG TGATGATAAC TTCCAGATTT TGGG 612 hqPGS_C06HBa0024L21.1-1+_SGN-E368629+ (2981 3133) ******************************************************************************** EST sequence 14 +strand 286 n (File: SGN-E355114+) 1 TTAGGTTCGT TGGTCTCATC ACACAAGAAC AGGTCTAGTA GAGTCTTTAG GAACGGTAGG 61 GGGACGCCTT TACTTTTCTT TGAGAGGCTA TAAGACTTTA GGAAAATTTC ACCCTTTCAT 121 TCTTTCTTTC GTGCTACTAC TTGAGTCCAA TTGGTATCTA GGCGATACAA ATTGGTATCT 181 GACCATCTTC ACTCTCTTTT GCAGATGGTT AGAACTAGAG CAACGACCAC GTCAACACCA 241 ACACCGGCCA GACAAGAAAC AACTGAGCCA GCCACTGGGG CTGTGG Predicted gene structure (within gDNA segment 2726 to 5081): Exon 1 3326 3606 ( 281 n); cDNA 1 284 ( 284 n); score: 0.875 MATCH C06HBa0024L21.1-1+ SGN-E355114+ 0.875 281 0.983 C PGS_C06HBa0024L21.1-1+_SGN-E355114+ (3326 3606) Alignment (genomic DNA sequence = upper lines): TTAGGTTCGT TGGTCTCATC ACACAAGAAC GAGTCTAGTA GAGTCTTAAG GAACGGTAGG 3385 |||||||||| |||||||||| |||||||||| |||||||| ||||||| || |||||||||| TTAGGTTCGT TGGTCTCATC ACACAAGAAC AGGTCTAGTA GAGTCTTTAG GAACGGTAGG 60 GGGACGCCTT TACTTTTCTT TGAGAGGCTA TAAGACTTTA GGAAAA-TT- --CCATTCTT 3441 |||||||||| |||||||||| |||||||||| |||||||||| |||||| || || ||| | GGGACGCCTT TACTTTTCTT TGAGAGGCTA TAAGACTTTA GGAAAATTTC ACCCTTTCAT 120 TCTTTTTTTC GTGCTATTAC TTGGGTCCAA TTGGTATCTA GGTGATACAA ATTGGTATCT 3501 ||||| |||| |||||| ||| ||| |||||| |||||||||| || ||||||| |||||||||| TCTTTCTTTC GTGCTACTAC TTGAGTCCAA TTGGTATCTA GGCGATACAA ATTGGTATCT 180 GACCATCTTC GCTCTACTTC GTAGATGGTT CGAACTAGAG CAACGAATGC GCCAACACTA 3561 |||||||||| |||| || | |||||||| ||||||||| |||||| | | |||||| GACCATCTTC ACTCTCTTTT GCAGATGGTT AGAACTAGAG CAACGACCAC GTCAACAC-C 239 AACACCGGCA AGACAAGAAG CGTCTGAGCC AGCCACTGGG GCTGT 3606 ||||||||| ||||||||| | ||||||| |||||||||| ||||| AACACCGGCC AGACAAGAAA CAACTGAGCC AGCCACTGGG GCTGT 284 hqPGS_C06HBa0024L21.1-1+_SGN-E355114+ (3326 3606) ******************************************************************************** EST sequence 39 +strand 694 n (File: SGN-E353359+) 1 TGTAGTCTAT GCACATTCAA AAACTGCCGA TCTTTACAAC AAAACCGGAG CACCCCAAGG 61 AGATGCACTT GGTCTAATGA AGCCTTTGTT CAATAACTCT TGAAGTTGTG CCTTTAACTC 121 TCTTAACTCT GCGGGAGCCA TTCTATAAGG GGGTATAAAA ATGGGGCGTG TGCCCGGTTC 181 GAGATCAATA CAGAAGTCAA TATCCCTATC CGGTGGCATA CCAGGATGAT CTGCAGGGAA 241 CACATCCATA AACTCACGAA CTACTGAAAC TGAGTCAATC GAAGGTACTT GGGTAGTGTT 301 ATCCTTGAGA TGTGCCAAGA AAGCTAAACA CCCTTTACTA ACCATTTTCT TAGCACGAAG 361 AAAGGAGATG ATACGCACCG GATTGGAAGT GTAGTCACCC TCCTACACTA ACAGATCTGT 421 CCCAGGCTTG GCTAACGTCA CGGTTTTAGC ATTACAATCC AAGATTGCAA AATTTGGAGA 481 AAGCCAAGTC ATACCCAGAA TTACATCGAA GTCAACCATT TCTTGCAAGG ATTTTGCCGT 541 AGCCGCTACC TGTAACGCTG AAATCCGCAA CTCTGACCTC AACCCTTTCA CAAAACGACG 601 AATCCTCTCT TGTGGACTGA AACAAAGTTG AGTGGCATAT CTGGATAGTG CACGAAACTT 661 AGCCTCATAT GCATTGACCT ACATCCTACC TTGC Predicted gene structure (within gDNA segment 5996 to 3510): Exon 1 5651 5226 ( 426 n); cDNA 94 519 ( 426 n); score: 0.913 Intron 1 5225 4484 ( 742 n); Pd: 0.000 (s: 1.00), Pa: 0.000 (s: 0.96) Exon 2 4483 4309 ( 175 n); cDNA 520 694 ( 175 n); score: 0.926 MATCH C06HBa0024L21.1-1- SGN-E353359+ 0.917 601 0.866 C PGS_C06HBa0024L21.1-1-_SGN-E353359+ (5651 5226,4483 4309) Alignment (genomic DNA sequence = upper lines): TAACTCTTGA AGTTGAGCCT TTAACTCTCT TAACTCTGCG GGAGCCATTC TATAAGGGGG 5592 |||||||||| ||||| |||| |||||||||| |||||||||| |||||||||| |||||||||| TAACTCTTGA AGTTGTGCCT TTAACTCTCT TAACTCTGCG GGAGCCATTC TATAAGGGGG 153 TATAGAAATG GGGCGAGTAC TCGGTTCAAG ATCGATGCAA AAGTCAATAT CCCTATCCGG 5532 |||| ||||| ||||| || | |||||| || ||| || || |||||||||| |||||||||| TATAAAAATG GGGCGTGTGC CCGGTTCGAG ATCAATACAG AAGTCAATAT CCCTATCCGG 213 TGGCATACCA GGAAGGTCTG CGGGAAAAAC ATCTAGAAAC TCACGGACTA TCGAAACCGA 5472 |||||||||| ||| | |||| | || || || ||| | |||| ||||| |||| ||||| || TGGCATACCA GGATGATCTG CAGGGAACAC ATCCATAAAC TCACGAACTA CTGAAACTGA 273 CTCAATTGAA GGTACTTGGG TAATATCATC CCTGAGGTGT GCCAAGAAAG CTAAACAACC 5412 ||||| ||| |||||||||| || | | ||| | |||| ||| |||||||||| ||||||| || GTCAATCGAA GGTACTTGGG TAGTGTTATC CTTGAGATGT GCCAAGAAAG CTAAACACCC 333 CTTACTAACC ATTCTCTTAG CACGAAGAAA GGAGACAATA CGAACCGGGT TGGAAGTGTA 5352 ||||||||| ||| |||||| |||||||||| ||||| ||| || ||||| | |||||||||| TTTACTAACC ATTTTCTTAG CACGAAGAAA GGAGATGATA CGCACCGGAT TGGAAGTGTA 393 GTCACCCTCC CACACTAACG GATCTGTCCC AGGCTTGGCT AACGTCACAG TTTTAGCATT 5292 |||||||||| |||||||| |||||||||| |||||||||| |||||||| | |||||||||| GTCACCCTCC TACACTAACA GATCTGTCCC AGGCTTGGCT AACGTCACGG TTTTAGCATT 453 ACAATCCAAG ATTGCAAAAT TTGGAGAAAG CCAAGTCATA CCCAGAATTA CATCGAAGTC 5232 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACAATCCAAG ATTGCAAAAT TTGGAGAAAG CCAAGTCATA CCCAGAATTA CATCGAAGTC 513 AACCATTTCT AAGATAACCA AGTCTACATG AGTATTGCTC CCCACAAAAG TCACCAGACA 5172 |||||| AACCAT.... .......... .......... .......... .......... .......... 519 AGACCTATAC ACCTTTTCAA CTATCACAGA CTCACCCACC GGAGTAGAAA CACGAATAGG 5112 .......... .......... .......... .......... .......... .......... 519 CATGTCAAGC AATTCACAAT GTAATTTAAG ACCATTAGCA AATGAGGAAG ATACATAAGA 5052 .......... .......... .......... .......... .......... .......... 519 AAATGTGGAT CCAGGATCAA ACAATACAGA AGCCACGCAA TCACAAACCA AAAGATTACC 4992 .......... .......... .......... .......... .......... .......... 519 TGTGATAACA ACATCAGATG TCTCCGCTTC AGACCGCCCA GGGAAAGCGT AACAATGGGC 4932 .......... .......... .......... .......... .......... .......... 519 CCTATCACCT GTCTGTTCGT TGCCTCTACC AGGTTGCGCT GCAGTAGTTC CCATTTGTCC 4872 .......... .......... .......... .......... .......... .......... 519 GTCACCCCGG CCGTTTTGGT GACCACCATT ACCTCGGTCA CCACGCCCTC CAGAATGACG 4812 .......... .......... .......... .......... .......... .......... 519 GCCTCTTCCA TGACCACCTC TACCTCTGAC TATTTGAGGT CTGTAACTCT GTTTTGGACA 4752 .......... .......... .......... .......... .......... .......... 519 ATACCTCTTA ATTTGTCCAG TCTCCCCACA TCCATAACAT TCTCTGGATT CAAGCATAGG 4692 .......... .......... .......... .......... .......... .......... 519 TCTCTCAGAG AAGTGTTGAC CGGTCTGAGG TGGACCCAAC TACAGTCTGT AGTGAAGACT 4632 .......... .......... .......... .......... .......... .......... 519 GAATTGGTCG GACTGAGTAA CCTCCTGAAT CCTGTTCTCT AGAGTAAGAA CCATTAAACT 4572 .......... .......... .......... .......... .......... .......... 519 CACCTCCCCT TCGAAACCTT TTTGATGTCG ATGCCATGGT GAAGTCATCT GGCTTCACTC 4512 .......... .......... .......... .......... .......... .......... 519 CTTCCACCTC TATCACGAAG TCTACCACTT CTTGAAAGGA TTTTGCCGTA GCCGCTACCT 4452 || |||| ||||| |||||||||| |||||||||| .......... .......... ........TT CTTGCAAGGA TTTTGCCGTA GCCGCTACCT 551 GTAAGGCTGA AATCCGCAAT TCTGACCTCA ATCCCTTCAC AAAACGGCGA ATCCGCTCTT 4392 |||| ||||| ||||||||| |||||||||| | || ||||| |||||| ||| |||| ||||| GTAACGCTGA AATCCGCAAC TCTGACCTCA ACCCTTTCAC AAAACGACGA ATCCTCTCTT 611 GTGGACTGAA ACAAAGTTGG GTGGCATACC TGGATAATGC ACGAAACTTA GCCTCATATG 4332 |||||||||| ||||||||| |||||||| | |||||| ||| |||||||||| |||||||||| GTGGACTGAA ACAAAGTTGA GTGGCATATC TGGATAGTGC ACGAAACTTA GCCTCATATG 671 CAGTAACCGA CATCCTACCT TGC 4309 || | ||| | |||||||||| ||| CATTGACCTA CATCCTACCT TGC 694 hqPGS_C06HBa0024L21.1-1-_SGN-E353359+ (5651 5226,4483 4309) ******************************************************************************** EST sequence 38 +strand 433 n (File: SGN-E352180+) 1 CCCTTGAAGA CCGGAGGTTT CAATTTCAAG AACTTACTGA AAAGTTCATG CTGATCATTT 61 GTCATTATAG GCCCAGTAGT CAAACGTGGA AATGTACCTA TGTGCAATGG AACATCCATG 121 CGGGGAGCCA TAGTAGCCGC ATGTTGTACT TCTGAAACCG GAGGTGTTGG CGCAGAAAAC 181 ACTGGAGGTG CTTGACCTTG ATCAGATAAA CCGCTAAGAT AAGCCAGAAC CTGATTGATC 241 ATCTCTGGGG TAGGTTGGGG TGGCATTTCC TCATTTTGCA CTTGTTCAGT TTCCCCATCC 301 TCCCCTTCTC TTATTACTTC CTCAGTCGGT GGAGGAGTCA CCGCCCTAGT ACCAGATGGG 361 CTCGGTTCTC GTTCTCTTCC TCTAGATGAC GTCCTCCCAC GACCTCTACC ACGGCCCCTT 421 GCCGCTGTTC TCC Predicted gene structure (within gDNA segment 4755 to 2267): Exon 1 4047 3618 ( 430 n); cDNA 1 430 ( 430 n); score: 0.884 MATCH C06HBa0024L21.1-1- SGN-E352180+ 0.884 430 0.993 C PGS_C06HBa0024L21.1-1-_SGN-E352180+ (4047 3618) Alignment (genomic DNA sequence = upper lines): CCCTTGAAGA CTGGAGGTTT CAATTTCAAG AACTTACTGA AAAGTTCATG CTGATCATTT 3988 |||||||||| | |||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCCTTGAAGA CCGGAGGTTT CAATTTCAAG AACTTACTGA AAAGTTCATG CTGATCATTT 60 GTCATTATAG GCCCTGTAGT CAGACGAGGA AACGTGCCTA TTTCCAATGA GGCATCCATG 3928 |||||||||| |||| ||||| || ||| ||| || || |||| | | ||||| |||||||| GTCATTATAG GCCCAGTAGT CAAACGTGGA AATGTACCTA TGTGCAATGG AACATCCATG 120 CGGGGAGCCA CAGTAGCTGC ATGTTGTACC TCCGAAACCT GAGGTGCTGG TGCAGAAAAC 3868 |||||||||| |||||| || ||||||||| || |||||| |||||| ||| ||||||||| CGGGGAGCCA TAGTAGCCGC ATGTTGTACT TCTGAAACCG GAGGTGTTGG CGCAGAAAAC 180 ACTGGAGGTG TCTGGCCCTG ATCAGATAAC CCGTTAAGAT AAGCAAGAAC CTGATTGATC 3808 |||||||||| || || || ||||||||| ||| |||||| |||| ||||| |||||||||| ACTGGAGGTG CTTGACCTTG ATCAGATAAA CCGCTAAGAT AAGCCAGAAC CTGATTGATC 240 ATCTCTGGGG TAGGTTGGGG TGGCAATCCC TCATTCTGTA CTTGTTCATT CTCCCCTTCC 3748 |||||||||| |||||||||| ||||| | || ||||| || | |||||||| | ||||| ||| ATCTCTGGGG TAGGTTGGGG TGGCATTTCC TCATTTTGCA CTTGTTCAGT TTCCCCATCC 300 TTACCCTCTC TTACCACTTC CTCAGTCGGT GGAGGAGTCA CCGCCCTAGT ATCAGATGGG 3688 | || |||| ||| ||||| |||||||||| |||||||||| |||||||||| | |||||||| TCCCCTTCTC TTATTACTTC CTCAGTCGGT GGAGGAGTCA CCGCCCTAGT ACCAGATGGG 360 CTAGGTGCTT GTCCTCTTCC TCTAGAGGAC GTCCTCCCAC GACCTCTTCC ACGACCTCTT 3628 || ||| || || ||||||| |||||| ||| |||||||||| ||||||| || ||| || ||| CTCGGTTCTC GTTCTCTTCC TCTAGATGAC GTCCTCCCAC GACCTCTACC ACGGCCCCTT 420 GCCACCACTC 3618 ||| | || GCCGCTGTTC 430 hqPGS_C06HBa0024L21.1-1-_SGN-E352180+ (4047 3618) ******************************************************************************** EST sequence 21 -strand 554 n (File: SGN-E329287-) 1 AGAATGATGC CCAAGTCATA CGTGGTGCCT CTGTTGGTTG ACACTCAACA TGTGACCGCC 61 ACCACATTTT GGCGTTCCCT TGAAACTGAT AAGTCACAAA CTCAACACCA AACCGTTCTA 121 CTATACCCAT CTTGTGTAGT AGCTCATGAC AGTCAACCAG AAAATCGTAG GCATCCTCAG 181 ATTCAACACC CTTGTAGACT TGAGGTTTCA ATTTCAAGAA CTTACTAAAA AGTTCATGCT 241 GATCATTTGT CATTATAGGC CCTGTAGTCA GACGGGGAAA CGTTCCTATT TCCAATGAGG 301 TATCGATGCG GGGAGTCACA GTAGGCGCAT GTTGTACCTC CGGAGCCTGA GGTGCTAGTG 361 CAGAAAACAC TGGAGGTGCT TGGCCTTGAT CAGATAACCC GCTAAGGTAA GCAAGAACCT 421 GATTGATCAT CTCTTGGGTA GGTTGGGGTG GCAATTCCTC ATTCTGCACT TGTTCATTCT 481 CCCCATCCTC ACCCTCTCTT ACCACTTCCT CAGTTGGTGG AGGTGTCACC GCCTTAGTAC 541 CAGATGGGCT AGGT Predicted gene structure (within gDNA segment 4845 to 2722): Exon 1 4235 3682 ( 554 n); cDNA 1 554 ( 554 n); score: 0.946 MATCH C06HBa0024L21.1-1- SGN-E329287- 0.946 554 1.000 C PGS_C06HBa0024L21.1-1-_SGN-E329287- (4235 3682) Alignment (genomic DNA sequence = upper lines): AGAATGATGC CCAAGTCATA GGTGGTGCCT CTGTTGGTTG ACACTCAACA TGTGACCGCC 4176 |||||||||| |||||||||| ||||||||| |||||||||| |||||||||| |||||||||| AGAATGATGC CCAAGTCATA CGTGGTGCCT CTGTTGGTTG ACACTCAACA TGTGACCGCC 60 ACCACATTTT GGCGTTCCCT TGAAACTGAT AAGTCACAAA CTCAACACCA AACCGTTCTA 4116 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACCACATTTT GGCGTTCCCT TGAAACTGAT AAGTCACAAA CTCAACACCA AACCGTTCTA 120 CTATACCCAT CTTGTGTAGT AGCTCATGAC AGTCAACCAG AAAATCATAG GCATCCTCAG 4056 |||||||||| |||||||||| |||||||||| |||||||||| |||||| ||| |||||||||| CTATACCCAT CTTGTGTAGT AGCTCATGAC AGTCAACCAG AAAATCGTAG GCATCCTCAG 180 ATTCAGCACC CTTGAAGACT GGAGGTTTCA ATTTCAAGAA CTTACTGAAA AGTTCATGCT 3996 ||||| |||| |||| ||||| ||||||||| |||||||||| |||||| ||| |||||||||| ATTCAACACC CTTGTAGACT TGAGGTTTCA ATTTCAAGAA CTTACTAAAA AGTTCATGCT 240 GATCATTTGT CATTATAGGC CCTGTAGTCA GACGAGGAAA CGTGCCTATT TCCAATGAGG 3936 |||||||||| |||||||||| |||||||||| |||| ||||| ||| |||||| |||||||||| GATCATTTGT CATTATAGGC CCTGTAGTCA GACGGGGAAA CGTTCCTATT TCCAATGAGG 300 CATCCATGCG GGGAGCCACA GTAGCTGCAT GTTGTACCTC CGAAACCTGA GGTGCTGGTG 3876 ||| ||||| ||||| |||| |||| |||| |||||||||| || | ||||| |||||| ||| TATCGATGCG GGGAGTCACA GTAGGCGCAT GTTGTACCTC CGGAGCCTGA GGTGCTAGTG 360 CAGAAAACAC TGGAGGTGTC TGGCCCTGAT CAGATAACCC GTTAAGATAA GCAAGAACCT 3816 |||||||||| |||||||| ||||| |||| |||||||||| | |||| ||| |||||||||| CAGAAAACAC TGGAGGTGCT TGGCCTTGAT CAGATAACCC GCTAAGGTAA GCAAGAACCT 420 GATTGATCAT CTCTGGGGTA GGTTGGGGTG GCAATCCCTC ATTCTGTACT TGTTCATTCT 3756 |||||||||| |||| ||||| |||||||||| ||||| |||| |||||| ||| |||||||||| GATTGATCAT CTCTTGGGTA GGTTGGGGTG GCAATTCCTC ATTCTGCACT TGTTCATTCT 480 CCCCTTCCTT ACCCTCTCTT ACCACTTCCT CAGTCGGTGG AGGAGTCACC GCCCTAGTAT 3696 |||| |||| |||||||||| |||||||||| |||| ||||| ||| |||||| ||| ||||| CCCCATCCTC ACCCTCTCTT ACCACTTCCT CAGTTGGTGG AGGTGTCACC GCCTTAGTAC 540 CAGATGGGCT AGGT 3682 |||||||||| |||| CAGATGGGCT AGGT 554 hqPGS_C06HBa0024L21.1-1-_SGN-E329287- (4235 3682) ******************************************************************************** EST sequence 26 +strand 716 n (File: SGN-E577713+) 1 CGGTGGATAC CTAGGCACCC AGAGACGAGG AAGGGCGTAG TAATCGACGA AATGCTTCGG 61 GGAGTTGAAA ATAAGCATAG ATCCGGAGAT TCCCGAATAG GGCAACCTTT CGAACTGCTG 121 CTGAATCCAT GGGCAGGCAA GAGACAACCT GGCGAACTGA AACATCTTAG TAGCCAGAGG 181 AAAAGAAAGC AAATAAGGAA GATACATAAG AAAACGTGGA TCCAGGATCA AACAATACAG 241 AAGCCATGCA ATCACAAACC AGAAGATTAC CTGTGATGAC AACATCAGAT GCCTCCGCTT 301 CACACCGCCC AGGGAAAGCG TAACAATGGG CCCTATCGTT CGTCTGTCCG TTGCCCCTAC 361 CATGTTGTGA TGTAGTGGCC CAAGTTTGCC CATTACCTCT GCCGTTTTGG TGACCACCAT 421 TACCTCGACC ACCACGTCCT CCAGAATAAC GGCCTCTACC ATGACCACCT CTACCTCTAG 481 CTATTGGGGG TCTATAACTT TGTCTGGGAC AATTTTTCCT AATATGTCCA ATCTCCCCAC 541 ATCCATACCA TTCTCTGGAG TCAATCCTAG GCCCCTCGGA GAAGTGTTGA CCGGTCTGAG 601 GTGGTCCCCC AACTACAGTC TGTAGTGAAG ACTCAATTGG TCGGACTGAG TAACTTCCCG 661 AACCCTGTCC TCTAGTGTAA GAACCATTAA ACTCACCTCC CTTTCGAAGC CTTTTT Predicted gene structure (within gDNA segment 5996 to 3381): Exon 1 5142 5113 ( 30 n); cDNA 156 185 ( 30 n); score: 0.633 Intron 1 5112 5078 ( 35 n); Pd: 0.989 (s: 0), Pa: 0.000 (s: 0.92) Exon 2 5077 4549 ( 529 n); cDNA 186 716 ( 531 n); score: 0.868 MATCH C06HBa0024L21.1-1- SGN-E577713+ 0.868 559 0.781 C PGS_C06HBa0024L21.1-1-_SGN-E577713+ (5142 5113,5077 4549) Alignment (genomic DNA sequence = upper lines): ACTCACCCAC CGGAGTAGAA ACACGAATAG GCATGTCAAG CAATTCACAA TGTAATTTAA 5083 ||| | || | ||||| | | ||| || ACTGAAACAT CTTAGTAGCC AGAGGAAAAG .......... .......... .......... 185 GACCATTAGC AAATGAGGAA GATACATAAG AAAATGTGGA TCCAGGATCA AACAATACAG 5023 ||| |||| ||||| |||||||||| |||| ||||| |||||||||| |||||||||| .....AAAGC AAATAAGGAA GATACATAAG AAAACGTGGA TCCAGGATCA AACAATACAG 240 AAGCCACGCA ATCACAAACC AAAAGATTAC CTGTGATAAC AACATCAGAT GTCTCCGCTT 4963 |||||| ||| |||||||||| | |||||||| ||||||| || |||||||||| | |||||||| AAGCCATGCA ATCACAAACC AGAAGATTAC CTGTGATGAC AACATCAGAT GCCTCCGCTT 300 CAGACCGCCC AGGGAAAGCG TAACAATGGG CCCTATCACC TGTCTGTTCG TTGCCTCTAC 4903 || ||||||| |||||||||| |||||||||| ||||||| |||||| || ||||| |||| CACACCGCCC AGGGAAAGCG TAACAATGGG CCCTATCGTT CGTCTGTCCG TTGCCCCTAC 360 CAGGTTGCGC TGCAGTAGTT CCCATTTGTC CGTCACCCCG GCCGTTTTGG TGACCACCAT 4843 || |||| | || ||| | | |||| | | | ||| | |||||||||| |||||||||| CATGTTGTGA TGTAGTGGCC CAAGTTTGCC CATTACCTCT GCCGTTTTGG TGACCACCAT 420 TACCTCGGTC ACCACGCCCT CCAGAATGAC GGCCTCTTCC ATGACCACCT CTACCTCTGA 4783 ||||||| | |||||| ||| ||||||| || ||||||| || |||||||||| |||||||| TACCTCGACC ACCACGTCCT CCAGAATAAC GGCCTCTACC ATGACCACCT CTACCTCTAG 480 CTATTTGAGG TCTGTAACTC TGTTTTGGAC AATACCTCTT AATTTGTCCA GTCTCCCCAC 4723 ||||| | || ||| ||||| ||| | |||| ||| || | ||| |||||| ||||||||| CTATTGGGGG TCTATAACTT TGTCTGGGAC AATTTTTCCT AATATGTCCA ATCTCCCCAC 540 ATCCATAACA TTCTCTGGAT TCAAGCATAG GTCTCTCAGA GAAGTGTTGA CCGGTCTGAG 4663 ||||||| || ||||||||| |||| | ||| | | ||| || |||||||||| |||||||||| ATCCATACCA TTCTCTGGAG TCAATCCTAG GCCCCTCGGA GAAGTGTTGA CCGGTCTGAG 600 GTGG--ACCC AACTACAGTC TGTAGTGAAG ACTGAATTGG TCGGACTGAG TAACCTCCTG 4605 |||| ||| |||||||||| |||||||||| ||| |||||| |||||||||| |||| ||| | GTGGTCCCCC AACTACAGTC TGTAGTGAAG ACTCAATTGG TCGGACTGAG TAACTTCCCG 660 AATCCTGTTC TCTAGAGTAA GAACCATTAA ACTCACCTCC CCTTCGAAAC CTTTTT 4549 || ||||| | ||||| |||| |||||||||| |||||||||| | |||||| | |||||| AACCCTGTCC TCTAGTGTAA GAACCATTAA ACTCACCTCC CTTTCGAAGC CTTTTT 716 hqPGS_C06HBa0024L21.1-1-_SGN-E577713+ (5142 5113,5077 4549) ******************************************************************************** EST sequence 47 +strand 720 n (File: SGN-E356614+) 1 GCGAATCCGC TCTTGAGGAC TGAAACAGAG TTGAGTGGCA TATCTGGATA GTGCACGAAA 61 CTTAGCCTCA TAAGCATTAA CTGACACCCT ACCTTGCTCT AGGCTCAAGA ACTCATCCCT 121 TTTCTTATCC CTCAAAGTCC GGGGGATATA CTTCTCCATA AACAAACTAT AGAATGAGGC 181 CCAAGTCATA GGTGATGCCT CTATTGGTTG ACACTCGATA TGTGACCGCC ACCACATTTG 241 GGCGTTCCCT TGAAACTGAT AAGTCACAAA CTCCACACCA AACCGTTCTA CTATACCCAT 301 CTTGTGTAGT AGCTCGTGAC AGTCAACCAG AAAATCATAA GCATCCTCCG ATTCAGCACC 361 CTTGAAGACC GGAGGTTTCA ATTTCAAGAA CTTACTGAAA AGTTCATGCT GATCATTTGT 421 CATTATAGGG ACAGTAGTCA AACGTGGAAA TGTGCCTATG TCCAATGGAA CATCCATGCG 481 GGGAGCCATA GTAGCCGCAT GTTGTACTTC TGAAACCGGA GGTGTTGGCG CAGAAAACAC 541 TGGAGGTGCT TGACCTTGAT CAGATAACCC GCTAAGATAA GCCAGAACCT GATTGATCAT 601 CTCTGGGGTA GGTTGGGGTG GCATTTCCTC ATTTTGCACT TGNTCAGTTT CCCCATCCCT 661 CCCTTTCTCT ATTACTTCCT CAGTCAGTGG AAGAGTCACT GCCCTAGTAT CAGATGGGCT Predicted gene structure (within gDNA segment 5464 to 2203): Exon 1 4405 3686 ( 720 n); cDNA 1 720 ( 720 n); score: 0.909 MATCH C06HBa0024L21.1-1- SGN-E356614+ 0.909 720 1.000 C PGS_C06HBa0024L21.1-1-_SGN-E356614+ (4405 3686) Alignment (genomic DNA sequence = upper lines): GCGAATCCGC TCTTGTGGAC TGAAACAAAG TTGGGTGGCA TACCTGGATA ATGCACGAAA 4346 |||||||||| ||||| |||| ||||||| || ||| |||||| || ||||||| ||||||||| GCGAATCCGC TCTTGAGGAC TGAAACAGAG TTGAGTGGCA TATCTGGATA GTGCACGAAA 60 CTTAGCCTCA TATGCAGTAA CCGACATCCT ACCTTGCTCT AGGCTCAAGA ACTCATCTCT 4286 |||||||||| || ||| ||| | |||| ||| |||||||||| |||||||||| ||||||| || CTTAGCCTCA TAAGCATTAA CTGACACCCT ACCTTGCTCT AGGCTCAAGA ACTCATCCCT 120 TTTCCTATCC CTCAAAGTCC GGGGGATATA CTTCTCCATA AACAAGCTAG AGAATGATGC 4226 |||| ||||| |||||||||| |||||||||| |||||||||| ||||| ||| ||||||| || TTTCTTATCC CTCAAAGTCC GGGGGATATA CTTCTCCATA AACAAACTAT AGAATGAGGC 180 CCAAGTCATA GGTGGTGCCT CTGTTGGTTG ACACTCAACA TGTGACCGCC ACCACATTTT 4166 |||||||||| |||| ||||| || ||||||| |||||| | | |||||||||| ||||||||| CCAAGTCATA GGTGATGCCT CTATTGGTTG ACACTCGATA TGTGACCGCC ACCACATTTG 240 GGCGTTCCCT TGAAACTGAT AAGTCACAAA CTCAACACCA AACCGTTCTA CTATACCCAT 4106 |||||||||| |||||||||| |||||||||| ||| |||||| |||||||||| |||||||||| GGCGTTCCCT TGAAACTGAT AAGTCACAAA CTCCACACCA AACCGTTCTA CTATACCCAT 300 CTTGTGTAGT AGCTCATGAC AGTCAACCAG AAAATCATAG GCATCCTCAG ATTCAGCACC 4046 |||||||||| ||||| |||| |||||||||| ||||||||| |||||||| | |||||||||| CTTGTGTAGT AGCTCGTGAC AGTCAACCAG AAAATCATAA GCATCCTCCG ATTCAGCACC 360 CTTGAAGACT GGAGGTTTCA ATTTCAAGAA CTTACTGAAA AGTTCATGCT GATCATTTGT 3986 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTGAAGACC GGAGGTTTCA ATTTCAAGAA CTTACTGAAA AGTTCATGCT GATCATTTGT 420 CATTATAGGC CCTGTAGTCA GACGAGGAAA CGTGCCTATT TCCAATGAGG CATCCATGCG 3926 ||||||||| | ||||||| ||| ||||| |||||||| ||||||| |||||||||| CATTATAGGG ACAGTAGTCA AACGTGGAAA TGTGCCTATG TCCAATGGAA CATCCATGCG 480 GGGAGCCACA GTAGCTGCAT GTTGTACCTC CGAAACCTGA GGTGCTGGTG CAGAAAACAC 3866 |||||||| | ||||| |||| ||||||| || |||||| || |||| ||| | |||||||||| GGGAGCCATA GTAGCCGCAT GTTGTACTTC TGAAACCGGA GGTGTTGGCG CAGAAAACAC 540 TGGAGGTGTC TGGCCCTGAT CAGATAACCC GTTAAGATAA GCAAGAACCT GATTGATCAT 3806 |||||||| || || |||| |||||||||| | |||||||| || ||||||| |||||||||| TGGAGGTGCT TGACCTTGAT CAGATAACCC GCTAAGATAA GCCAGAACCT GATTGATCAT 600 CTCTGGGGTA GGTTGGGGTG GCAATCCCTC ATTCTGTACT TGTTCATTCT CCCCTTCCTT 3746 |||||||||| |||||||||| ||| | |||| ||| || ||| || ||| | | |||| ||| | CTCTGGGGTA GGTTGGGGTG GCATTTCCTC ATTTTGCACT TGNTCAGTTT CCCCATCCCT 660 ACCCTCTCT- TACCACTTCC TCAGTCGGTG GAGGAGTCAC CGCCCTAGTA TCAGATGGGC 3687 |||| ||| || |||||| |||||| ||| || ||||||| ||||||||| |||||||||| -CCCTTTCTC TATTACTTCC TCAGTCAGTG GAAGAGTCAC TGCCCTAGTA TCAGATGGGC 719 T 3686 | T 720 hqPGS_C06HBa0024L21.1-1-_SGN-E356614+ (4405 3686) ******************************************************************************** EST sequence 28 +strand 664 n (File: SGN-E352401+) 1 AATCCGCTCT TGAGGACTGA AACAGAGTTG AGTGGCATAT CTGGATAGTG CACGAAACTT 61 AGCCTCATAA GCATTAACTG ACACCCTACC TTGCTCTAGG CTCAAGAACT CATCCCTTTT 121 CTTATCCCTC AAAGTCCGGG GGATATACTT CTCCATAAAC AAACTATAGA ATGAGGCCCA 181 AGTCATAGGT GATGCCTCTA TTGGTTGACA CTCGATATGT GACCGCCACC ACATTTGGGC 241 GTTCCCTTGA AACTGATAAG TCACAAACTC CACACCAAAC CGTTCTACTA TACCCATCTT 301 GTGTAGTAGC TCGTGACAGT CAACCAGAAA ATCATAAGCA TCCTCCGATT CAGCACCCTT 361 GAAGACCGGA GGTTTCAATT TCAAGAACTT ACTGAAAAGT TCATGCTGAT CATTTGTCAT 421 TATAGGGACA GTAGTCAAAC GTGGAAATGT GCCTATGTCC AATGGAACAT CCATGCGGGG 481 AGCCATAGTA GCCGCATGTT GTACTTCTGA AACCGGAGGT GTTGGCGCAG AAAACACTGG 541 AGGTGCTTGA CCTTGATCAG ATAACCCGCT AAGATAAGCC AGAACCTGAT TGATCATCTC 601 TGGGGTAGGT TGGGGTGCCA TTTCCCTCAT TTGCACTTGT TCAGTTTCCC CATCCTCCCC 661 TTCT Predicted gene structure (within gDNA segment 5434 to 2706): Exon 1 4402 3739 ( 664 n); cDNA 1 664 ( 664 n); score: 0.910 MATCH C06HBa0024L21.1-1- SGN-E352401+ 0.910 664 1.000 C PGS_C06HBa0024L21.1-1-_SGN-E352401+ (4402 3739) Alignment (genomic DNA sequence = upper lines): AATCCGCTCT TGTGGACTGA AACAAAGTTG GGTGGCATAC CTGGATAATG CACGAAACTT 4343 |||||||||| || ||||||| |||| ||||| |||||||| ||||||| || |||||||||| AATCCGCTCT TGAGGACTGA AACAGAGTTG AGTGGCATAT CTGGATAGTG CACGAAACTT 60 AGCCTCATAT GCAGTAACCG ACATCCTACC TTGCTCTAGG CTCAAGAACT CATCTCTTTT 4283 ||||||||| ||| |||| | ||| |||||| |||||||||| |||||||||| |||| ||||| AGCCTCATAA GCATTAACTG ACACCCTACC TTGCTCTAGG CTCAAGAACT CATCCCTTTT 120 CCTATCCCTC AAAGTCCGGG GGATATACTT CTCCATAAAC AAGCTAGAGA ATGATGCCCA 4223 | |||||||| |||||||||| |||||||||| |||||||||| || ||| ||| |||| ||||| CTTATCCCTC AAAGTCCGGG GGATATACTT CTCCATAAAC AAACTATAGA ATGAGGCCCA 180 AGTCATAGGT GGTGCCTCTG TTGGTTGACA CTCAACATGT GACCGCCACC ACATTTTGGC 4163 |||||||||| | ||||||| |||||||||| ||| | |||| |||||||||| |||||| ||| AGTCATAGGT GATGCCTCTA TTGGTTGACA CTCGATATGT GACCGCCACC ACATTTGGGC 240 GTTCCCTTGA AACTGATAAG TCACAAACTC AACACCAAAC CGTTCTACTA TACCCATCTT 4103 |||||||||| |||||||||| |||||||||| ||||||||| |||||||||| |||||||||| GTTCCCTTGA AACTGATAAG TCACAAACTC CACACCAAAC CGTTCTACTA TACCCATCTT 300 GTGTAGTAGC TCATGACAGT CAACCAGAAA ATCATAGGCA TCCTCAGATT CAGCACCCTT 4043 |||||||||| || ||||||| |||||||||| |||||| ||| ||||| |||| |||||||||| GTGTAGTAGC TCGTGACAGT CAACCAGAAA ATCATAAGCA TCCTCCGATT CAGCACCCTT 360 GAAGACTGGA GGTTTCAATT TCAAGAACTT ACTGAAAAGT TCATGCTGAT CATTTGTCAT 3983 |||||| ||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAGACCGGA GGTTTCAATT TCAAGAACTT ACTGAAAAGT TCATGCTGAT CATTTGTCAT 420 TATAGGCCCT GTAGTCAGAC GAGGAAACGT GCCTATTTCC AATGAGGCAT CCATGCGGGG 3923 |||||| | ||||||| || | ||||| || |||||| ||| |||| ||| |||||||||| TATAGGGACA GTAGTCAAAC GTGGAAATGT GCCTATGTCC AATGGAACAT CCATGCGGGG 480 AGCCACAGTA GCTGCATGTT GTACCTCCGA AACCTGAGGT GCTGGTGCAG AAAACACTGG 3863 ||||| |||| || ||||||| |||| || || |||| ||||| | ||| |||| |||||||||| AGCCATAGTA GCCGCATGTT GTACTTCTGA AACCGGAGGT GTTGGCGCAG AAAACACTGG 540 AGGTGTCTGG CCCTGATCAG ATAACCCGTT AAGATAAGCA AGAACCTGAT TGATCATCTC 3803 ||||| || || ||||||| |||||||| | ||||||||| |||||||||| |||||||||| AGGTGCTTGA CCTTGATCAG ATAACCCGCT AAGATAAGCC AGAACCTGAT TGATCATCTC 600 TGGGGTAGGT TGGGGTGGCA -ATCCCTCAT TCTGTACTTG TTCATTCTCC CCTTCCTTAC 3744 |||||||||| ||||||| || |||||||| | || ||||| |||| | ||| || |||| | TGGGGTAGGT TGGGGTGCCA TTTCCCTCAT T-TGCACTTG TTCAGTTTCC CCATCCTCCC 659 CCTCT 3739 | ||| CTTCT 664 hqPGS_C06HBa0024L21.1-1-_SGN-E352401+ (4402 3739) ******************************************************************************** EST sequence 43 +strand 713 n (File: SGN-E349404+) 1 GGGGTTCTGT CCTCTAGAAT AAGAACCATT ATACTCTCCT CCCCTTCTAA ACCTCTTCGA 61 TGTCGATGTC GTGGTGAAGT CATCCGGTTT CACTCCTTCC ACCTCAATCA CAAAGTCTAC 121 CACCTCTTGA AAGGATGTTG CTGTTGCCGC TATCTGTAAG GCTGAAATCC GCAATTCTGA 181 TCTCAACCCC TTCACAAAAC GGCGGATCCG TTCTTGTGGA CTAAAACAGA GTTGGGTGGC 241 GTATCTGGAT AGTGCGCGAA ATTTAGCCTC ATACGCGTTT ACTGTCATCC TTCCCTGTTC 301 AAGACTCAAG AACTCATCCC TTTTCCTATC TCTCAAAGTC CTTGGGATAT ATTTCTCCAT 361 GAACAAACTA GAGAATGATT CCCAAGTCAT AGGTGGTGCC TCTGTTGGTT GACACTCAAC 421 ATGTGAACGC CACCACATCT TGGCGTTCCC TTGGAACTGA TAGCTCACGA ACTCGACGCC 481 AAACCTCTCT ACTATCCCCA TTTTGTGTAG TAGCTCATGA CAATCAACCA GAAAATCATA 541 AGCATCTTCA GATTCTGCAC CCTTGAAGAC TGGAGGTTTC AGTTTCAAGA ACTTACTGAA 601 AAGTTCATGT TGATCGTTTG TCATAATAGG CCCAGTAGTC AGACGTGGAA ATGTGCCTAT 661 TCCCAATGGT GCATCTATGC GGGGAGCCAT AGTAGCCGCA TGTCGTATCT CTG Predicted gene structure (within gDNA segment 5996 to 2348): Exon 1 4600 3896 ( 705 n); cDNA 7 711 ( 705 n); score: 0.888 MATCH C06HBa0024L21.1-1- SGN-E349404+ 0.888 705 0.989 C PGS_C06HBa0024L21.1-1-_SGN-E349404+ (4600 3896) Alignment (genomic DNA sequence = upper lines): CTGTTCTCTA GAGTAAGAAC CATTAAACTC ACCTCCCCTT CGAAACCTTT TTGATGTCGA 4541 |||| ||||| || ||||||| ||||| |||| ||||||||| | |||||| | | |||||||| CTGTCCTCTA GAATAAGAAC CATTATACTC TCCTCCCCTT CTAAACCTCT TCGATGTCGA 66 TGCCATGGTG AAGTCATCTG GCTTCACTCC TTCCACCTCT ATCACGAAGT CTACCACTTC 4481 || | ||||| |||||||| | | |||||||| ||||||||| ||||| |||| ||||||| || TGTCGTGGTG AAGTCATCCG GTTTCACTCC TTCCACCTCA ATCACAAAGT CTACCACCTC 126 TTGAAAGGAT TTTGCCGTAG CCGCTACCTG TAAGGCTGAA ATCCGCAATT CTGACCTCAA 4421 |||||||||| |||| || | |||||| ||| |||||||||| |||||||||| |||| ||||| TTGAAAGGAT GTTGCTGTTG CCGCTATCTG TAAGGCTGAA ATCCGCAATT CTGATCTCAA 186 TCCCTTCACA AAACGGCGAA TCCGCTCTTG TGGACTGAAA CAAAGTTGGG TGGCATACCT 4361 ||||||||| |||||||| | |||| ||||| |||||| ||| || ||||||| |||| || || CCCCTTCACA AAACGGCGGA TCCGTTCTTG TGGACTAAAA CAGAGTTGGG TGGCGTATCT 246 GGATAATGCA CGAAACTTAG CCTCATATGC AGTAACCGAC ATCCTACCTT GCTCTAGGCT 4301 ||||| ||| ||||| |||| ||||||| || | || | | ||||| || | | || || || GGATAGTGCG CGAAATTTAG CCTCATACGC GTTTACTGTC ATCCTTCCCT GTTCAAGACT 306 CAAGAACTCA TCTCTTTTCC TATCCCTCAA AGTCCGGGGG ATATACTTCT CCATAAACAA 4241 |||||||||| || ||||||| |||| ||||| ||||| ||| ||||| |||| |||| ||||| CAAGAACTCA TCCCTTTTCC TATCTCTCAA AGTCCTTGGG ATATATTTCT CCATGAACAA 366 GCTAGAGAAT GATGCCCAAG TCATAGGTGG TGCCTCTGTT GGTTGACACT CAACATGTGA 4181 ||||||||| ||| |||||| |||||||||| |||||||||| |||||||||| |||||||||| ACTAGAGAAT GATTCCCAAG TCATAGGTGG TGCCTCTGTT GGTTGACACT CAACATGTGA 426 CCGCCACCAC ATTTTGGCGT TCCCTTGAAA CTGATAAGTC ACAAACTCAA CACCAAACCG 4121 ||||||||| || ||||||| ||||||| || |||||| || || ||||| | | ||||||| ACGCCACCAC ATCTTGGCGT TCCCTTGGAA CTGATAGCTC ACGAACTCGA CGCCAAACCT 486 TTCTACTATA CCCATCTTGT GTAGTAGCTC ATGACAGTCA ACCAGAAAAT CATAGGCATC 4061 |||||||| ||||| |||| |||||||||| |||||| ||| |||||||||| |||| ||||| CTCTACTATC CCCATTTTGT GTAGTAGCTC ATGACAATCA ACCAGAAAAT CATAAGCATC 546 CTCAGATTCA GCACCCTTGA AGACTGGAGG TTTCAATTTC AAGAACTTAC TGAAAAGTTC 4001 |||||||| |||||||||| |||||||||| ||||| |||| |||||||||| |||||||||| TTCAGATTCT GCACCCTTGA AGACTGGAGG TTTCAGTTTC AAGAACTTAC TGAAAAGTTC 606 ATGCTGATCA TTTGTCATTA TAGGCCCTGT AGTCAGACGA GGAAACGTGC CTATTTCCAA 3941 ||| ||||| |||||||| | ||||||| || ||||||||| ||||| |||| ||||| |||| ATGTTGATCG TTTGTCATAA TAGGCCCAGT AGTCAGACGT GGAAATGTGC CTATTCCCAA 666 TGAGGCATCC ATGCGGGGAG CCACAGTAGC TGCATGTTGT ACCTC 3896 || ||||| |||||||||| ||| |||||| |||||| || | ||| TGGTGCATCT ATGCGGGGAG CCATAGTAGC CGCATGTCGT ATCTC 711 hqPGS_C06HBa0024L21.1-1-_SGN-E349404+ (4600 3896) ******************************************************************************** EST sequence 37 +strand 679 n (File: SGN-E351625+) 1 GGGGTTCTGT CCTCTAGAAT AAGAACCATT ATACTCTCCT CCCCTTCTAA ACCTCTTCGA 61 TGTCGATGTC GTGGTGAAGT CATCCGGTTT CACTCCTTCC ACCTCAATCA CAAAGTCTAC 121 CACCTCTTGA AAGGATGTTG CTGTTGCCGC TATCTGTAAG GCTGAAATCC GCAATTCTGA 181 TCTCAACCCC TTCACAAAAC GGCGGATCCG TTCTTGTGGA CTAAAACAGA GTTGGGTGGC 241 GTATCTGGAT AGTGCGCGAA ATTTAGCCTC ATACGCGTTT ACTGTCATCC TTCCCTGTTC 301 AAGACTCAAG AACTCATCCC TTTTCCTATC TCTCAAAGTC CTTGGGATAT ATTTCTCCAT 361 GAACAAACTA GAGAATGATT CCCAAGTCAT AGGTGGTGCC TCTGTTGGTT GACACTCAAC 421 ATGTGAACGC CACCACATCT TGGCGTTCCC TTGGAACTGA TAGCTCACGA ACTCGACGCC 481 AAACCTCTCT ACTATCCCCA TTTTGTGTAG TAGCTCATGA CAATCAACCA GAAAATCATA 541 AGCATCTTCA GATTCTGCAC CCTTGAAGAC TGGAGGTTTC AGTTTCAAGA ACTTACTGAA 601 AAGTTCATGT TGATCGTTTG TCATAATAAG CCCAGTAGTC AGACGTGGAA ATGTGCCTAT 661 TCCCAATGGT GCATCTATG Predicted gene structure (within gDNA segment 5996 to 2688): Exon 1 4600 3928 ( 673 n); cDNA 7 679 ( 673 n); score: 0.887 MATCH C06HBa0024L21.1-1- SGN-E351625+ 0.887 673 0.991 C PGS_C06HBa0024L21.1-1-_SGN-E351625+ (4600 3928) Alignment (genomic DNA sequence = upper lines): CTGTTCTCTA GAGTAAGAAC CATTAAACTC ACCTCCCCTT CGAAACCTTT TTGATGTCGA 4541 |||| ||||| || ||||||| ||||| |||| ||||||||| | |||||| | | |||||||| CTGTCCTCTA GAATAAGAAC CATTATACTC TCCTCCCCTT CTAAACCTCT TCGATGTCGA 66 TGCCATGGTG AAGTCATCTG GCTTCACTCC TTCCACCTCT ATCACGAAGT CTACCACTTC 4481 || | ||||| |||||||| | | |||||||| ||||||||| ||||| |||| ||||||| || TGTCGTGGTG AAGTCATCCG GTTTCACTCC TTCCACCTCA ATCACAAAGT CTACCACCTC 126 TTGAAAGGAT TTTGCCGTAG CCGCTACCTG TAAGGCTGAA ATCCGCAATT CTGACCTCAA 4421 |||||||||| |||| || | |||||| ||| |||||||||| |||||||||| |||| ||||| TTGAAAGGAT GTTGCTGTTG CCGCTATCTG TAAGGCTGAA ATCCGCAATT CTGATCTCAA 186 TCCCTTCACA AAACGGCGAA TCCGCTCTTG TGGACTGAAA CAAAGTTGGG TGGCATACCT 4361 ||||||||| |||||||| | |||| ||||| |||||| ||| || ||||||| |||| || || CCCCTTCACA AAACGGCGGA TCCGTTCTTG TGGACTAAAA CAGAGTTGGG TGGCGTATCT 246 GGATAATGCA CGAAACTTAG CCTCATATGC AGTAACCGAC ATCCTACCTT GCTCTAGGCT 4301 ||||| ||| ||||| |||| ||||||| || | || | | ||||| || | | || || || GGATAGTGCG CGAAATTTAG CCTCATACGC GTTTACTGTC ATCCTTCCCT GTTCAAGACT 306 CAAGAACTCA TCTCTTTTCC TATCCCTCAA AGTCCGGGGG ATATACTTCT CCATAAACAA 4241 |||||||||| || ||||||| |||| ||||| ||||| ||| ||||| |||| |||| ||||| CAAGAACTCA TCCCTTTTCC TATCTCTCAA AGTCCTTGGG ATATATTTCT CCATGAACAA 366 GCTAGAGAAT GATGCCCAAG TCATAGGTGG TGCCTCTGTT GGTTGACACT CAACATGTGA 4181 ||||||||| ||| |||||| |||||||||| |||||||||| |||||||||| |||||||||| ACTAGAGAAT GATTCCCAAG TCATAGGTGG TGCCTCTGTT GGTTGACACT CAACATGTGA 426 CCGCCACCAC ATTTTGGCGT TCCCTTGAAA CTGATAAGTC ACAAACTCAA CACCAAACCG 4121 ||||||||| || ||||||| ||||||| || |||||| || || ||||| | | ||||||| ACGCCACCAC ATCTTGGCGT TCCCTTGGAA CTGATAGCTC ACGAACTCGA CGCCAAACCT 486 TTCTACTATA CCCATCTTGT GTAGTAGCTC ATGACAGTCA ACCAGAAAAT CATAGGCATC 4061 |||||||| ||||| |||| |||||||||| |||||| ||| |||||||||| |||| ||||| CTCTACTATC CCCATTTTGT GTAGTAGCTC ATGACAATCA ACCAGAAAAT CATAAGCATC 546 CTCAGATTCA GCACCCTTGA AGACTGGAGG TTTCAATTTC AAGAACTTAC TGAAAAGTTC 4001 |||||||| |||||||||| |||||||||| ||||| |||| |||||||||| |||||||||| TTCAGATTCT GCACCCTTGA AGACTGGAGG TTTCAGTTTC AAGAACTTAC TGAAAAGTTC 606 ATGCTGATCA TTTGTCATTA TAGGCCCTGT AGTCAGACGA GGAAACGTGC CTATTTCCAA 3941 ||| ||||| |||||||| | || |||| || ||||||||| ||||| |||| ||||| |||| ATGTTGATCG TTTGTCATAA TAAGCCCAGT AGTCAGACGT GGAAATGTGC CTATTCCCAA 666 TGAGGCATCC ATG 3928 || ||||| ||| TGGTGCATCT ATG 679 hqPGS_C06HBa0024L21.1-1-_SGN-E351625+ (4600 3928) ******************************************************************************** EST sequence 49 +strand 612 n (File: SGN-E357065+) 1 GGGTTCTGTC CTCTAGAATA AGAACCATTA TACTCTCCTC CCCTTCTAAA CCTCTTCGAT 61 GTCGATGTCG TGGTGAAGTC ATCCGGTTTC ACTCCTTCCA CCTCAATCAC AAAGTCTACC 121 ACCTCTTGAA AGGATGTTGC TGTTGCCGCT ATCTGTAAGG CTGAAATCCG CAATTCTGAT 181 CTCAACCCCT TCACAAAACG GCGGATCCGT TCTTGTGGAC TAAAACAGAG TTGGGTGGCG 241 TATCTGGATA GTGCGCGAAA TTTAGCCTCA TACGCGTTTA CTGTCATCCT TCCCTGTTCA 301 AGACTCAAGA ACTCATCCCT TTTCCTATCT CTCAAAGTCC TTGGGATATA TTTCTCCATG 361 AACAAACTAG AGAATGATTC CCAAGTCATA GGTGGTGCCT CTGTTGGTTG ACACTCAACA 421 TGTGAACGCC ACCACATCTT GGCGTTCCCT TGGAACTGAT AGCTCACGAA CTCGACGCCA 481 AACCTCTCTA CTATCCCCAT TTTGTGTAGT AGCTCATGAC AATCAACCAG AAAATCATAA 541 GCATCTTCAG ATTCTGCACC CTTGAAGACT GGAGGTTTCA GTTTCAAGAA CTTACTGAAA 601 AGTCATGTTG AT Predicted gene structure (within gDNA segment 5996 to 3303): Exon 1 4600 3993 ( 608 n); cDNA 6 612 ( 607 n); score: 0.890 MATCH C06HBa0024L21.1-1- SGN-E357065+ 0.890 608 0.993 C PGS_C06HBa0024L21.1-1-_SGN-E357065+ (4600 3993) Alignment (genomic DNA sequence = upper lines): CTGTTCTCTA GAGTAAGAAC CATTAAACTC ACCTCCCCTT CGAAACCTTT TTGATGTCGA 4541 |||| ||||| || ||||||| ||||| |||| ||||||||| | |||||| | | |||||||| CTGTCCTCTA GAATAAGAAC CATTATACTC TCCTCCCCTT CTAAACCTCT TCGATGTCGA 65 TGCCATGGTG AAGTCATCTG GCTTCACTCC TTCCACCTCT ATCACGAAGT CTACCACTTC 4481 || | ||||| |||||||| | | |||||||| ||||||||| ||||| |||| ||||||| || TGTCGTGGTG AAGTCATCCG GTTTCACTCC TTCCACCTCA ATCACAAAGT CTACCACCTC 125 TTGAAAGGAT TTTGCCGTAG CCGCTACCTG TAAGGCTGAA ATCCGCAATT CTGACCTCAA 4421 |||||||||| |||| || | |||||| ||| |||||||||| |||||||||| |||| ||||| TTGAAAGGAT GTTGCTGTTG CCGCTATCTG TAAGGCTGAA ATCCGCAATT CTGATCTCAA 185 TCCCTTCACA AAACGGCGAA TCCGCTCTTG TGGACTGAAA CAAAGTTGGG TGGCATACCT 4361 ||||||||| |||||||| | |||| ||||| |||||| ||| || ||||||| |||| || || CCCCTTCACA AAACGGCGGA TCCGTTCTTG TGGACTAAAA CAGAGTTGGG TGGCGTATCT 245 GGATAATGCA CGAAACTTAG CCTCATATGC AGTAACCGAC ATCCTACCTT GCTCTAGGCT 4301 ||||| ||| ||||| |||| ||||||| || | || | | ||||| || | | || || || GGATAGTGCG CGAAATTTAG CCTCATACGC GTTTACTGTC ATCCTTCCCT GTTCAAGACT 305 CAAGAACTCA TCTCTTTTCC TATCCCTCAA AGTCCGGGGG ATATACTTCT CCATAAACAA 4241 |||||||||| || ||||||| |||| ||||| ||||| ||| ||||| |||| |||| ||||| CAAGAACTCA TCCCTTTTCC TATCTCTCAA AGTCCTTGGG ATATATTTCT CCATGAACAA 365 GCTAGAGAAT GATGCCCAAG TCATAGGTGG TGCCTCTGTT GGTTGACACT CAACATGTGA 4181 ||||||||| ||| |||||| |||||||||| |||||||||| |||||||||| |||||||||| ACTAGAGAAT GATTCCCAAG TCATAGGTGG TGCCTCTGTT GGTTGACACT CAACATGTGA 425 CCGCCACCAC ATTTTGGCGT TCCCTTGAAA CTGATAAGTC ACAAACTCAA CACCAAACCG 4121 ||||||||| || ||||||| ||||||| || |||||| || || ||||| | | ||||||| ACGCCACCAC ATCTTGGCGT TCCCTTGGAA CTGATAGCTC ACGAACTCGA CGCCAAACCT 485 TTCTACTATA CCCATCTTGT GTAGTAGCTC ATGACAGTCA ACCAGAAAAT CATAGGCATC 4061 |||||||| ||||| |||| |||||||||| |||||| ||| |||||||||| |||| ||||| CTCTACTATC CCCATTTTGT GTAGTAGCTC ATGACAATCA ACCAGAAAAT CATAAGCATC 545 CTCAGATTCA GCACCCTTGA AGACTGGAGG TTTCAATTTC AAGAACTTAC TGAAAAGTTC 4001 |||||||| |||||||||| |||||||||| ||||| |||| |||||||||| ||||||| || TTCAGATTCT GCACCCTTGA AGACTGGAGG TTTCAGTTTC AAGAACTTAC TGAAAAG-TC 604 ATGCTGAT 3993 ||| |||| ATGTTGAT 612 hqPGS_C06HBa0024L21.1-1-_SGN-E357065+ (4600 3993) ******************************************************************************** EST sequence 29 +strand 524 n (File: SGN-E352365+) 1 GGGGTTCTGT CCTCTAGAAT AAGAACCATT ATACTCTCCT CCCCTTCTAA ACCTCTTCGA 61 TGTCGATGTC GTGGTGAAGT CATCCGGTTT CACTCCTTCC ACCTCAATCA CAAAGTCTAC 121 CACCTCTTGA AAGGATGTTG CTGTTGCCGC TATCTGTAAG GCTGAAATCC GCAATTCTGA 181 TCTCAACCCC TTCACAAAAC GGCGGATCCG TTCTTGTGGA CTAAAACAGA GTTGGGTGGC 241 GTATCTGGAT AGTGCGCGAA ATTTAGCCTC ATACGCGTTT ACTGTCATCC TTCCCTGTTC 301 AAGACTCAAG AACTCATCCC TTTTCCTATC TCTCAAAGTC CTTGGGATAT ATTTCTCCAT 361 GAACAAACTA GAGAATGATT CCCAAGTCAT AGGTGGTGCC TCTGTTGGTT GACACTCAAC 421 ATGTGAACGC CACCACATCT TGGCGTTCCC TTGGAACTGA TAGCTCACGA ACTCGACGCC 481 AAACCTCTCT ACTATCCCCA TTTTGTGTAG TAGCTCATGA CAAT Predicted gene structure (within gDNA segment 5996 to 2591): Exon 1 4600 4085 ( 516 n); cDNA 7 522 ( 516 n); score: 0.884 MATCH C06HBa0024L21.1-1- SGN-E352365+ 0.884 516 0.985 C PGS_C06HBa0024L21.1-1-_SGN-E352365+ (4600 4085) Alignment (genomic DNA sequence = upper lines): CTGTTCTCTA GAGTAAGAAC CATTAAACTC ACCTCCCCTT CGAAACCTTT TTGATGTCGA 4541 |||| ||||| || ||||||| ||||| |||| ||||||||| | |||||| | | |||||||| CTGTCCTCTA GAATAAGAAC CATTATACTC TCCTCCCCTT CTAAACCTCT TCGATGTCGA 66 TGCCATGGTG AAGTCATCTG GCTTCACTCC TTCCACCTCT ATCACGAAGT CTACCACTTC 4481 || | ||||| |||||||| | | |||||||| ||||||||| ||||| |||| ||||||| || TGTCGTGGTG AAGTCATCCG GTTTCACTCC TTCCACCTCA ATCACAAAGT CTACCACCTC 126 TTGAAAGGAT TTTGCCGTAG CCGCTACCTG TAAGGCTGAA ATCCGCAATT CTGACCTCAA 4421 |||||||||| |||| || | |||||| ||| |||||||||| |||||||||| |||| ||||| TTGAAAGGAT GTTGCTGTTG CCGCTATCTG TAAGGCTGAA ATCCGCAATT CTGATCTCAA 186 TCCCTTCACA AAACGGCGAA TCCGCTCTTG TGGACTGAAA CAAAGTTGGG TGGCATACCT 4361 ||||||||| |||||||| | |||| ||||| |||||| ||| || ||||||| |||| || || CCCCTTCACA AAACGGCGGA TCCGTTCTTG TGGACTAAAA CAGAGTTGGG TGGCGTATCT 246 GGATAATGCA CGAAACTTAG CCTCATATGC AGTAACCGAC ATCCTACCTT GCTCTAGGCT 4301 ||||| ||| ||||| |||| ||||||| || | || | | ||||| || | | || || || GGATAGTGCG CGAAATTTAG CCTCATACGC GTTTACTGTC ATCCTTCCCT GTTCAAGACT 306 CAAGAACTCA TCTCTTTTCC TATCCCTCAA AGTCCGGGGG ATATACTTCT CCATAAACAA 4241 |||||||||| || ||||||| |||| ||||| ||||| ||| ||||| |||| |||| ||||| CAAGAACTCA TCCCTTTTCC TATCTCTCAA AGTCCTTGGG ATATATTTCT CCATGAACAA 366 GCTAGAGAAT GATGCCCAAG TCATAGGTGG TGCCTCTGTT GGTTGACACT CAACATGTGA 4181 ||||||||| ||| |||||| |||||||||| |||||||||| |||||||||| |||||||||| ACTAGAGAAT GATTCCCAAG TCATAGGTGG TGCCTCTGTT GGTTGACACT CAACATGTGA 426 CCGCCACCAC ATTTTGGCGT TCCCTTGAAA CTGATAAGTC ACAAACTCAA CACCAAACCG 4121 ||||||||| || ||||||| ||||||| || |||||| || || ||||| | | ||||||| ACGCCACCAC ATCTTGGCGT TCCCTTGGAA CTGATAGCTC ACGAACTCGA CGCCAAACCT 486 TTCTACTATA CCCATCTTGT GTAGTAGCTC ATGACA 4085 |||||||| ||||| |||| |||||||||| |||||| CTCTACTATC CCCATTTTGT GTAGTAGCTC ATGACA 522 hqPGS_C06HBa0024L21.1-1-_SGN-E352365+ (4600 4085) ******************************************************************************** EST sequence 48 +strand 790 n (File: SGN-E356912+) 1 CAGGATCAAA CAATACGGAA GCCATGCAAT CACAAACTAG AAGATTACCT GTGATGACAG 61 CATCAGATGC CTCCGCTTCA GACCGCCCAG GGAAAGCGTA ACAATGGGCC CTATCGTTTG 121 TCTGCCCATT GCCCCTACCA TGTTGTGATG TAGTGGCCCC AGTTTGCCCA TTACCTCTGC 181 CGTTTTGGTG ACCACCATTA CCTCGACCAC CACGTCCTCC AGAATAACGG CCTCTACCAT 241 GACCACCTCT ACCTCTAGCT ATTGGGGGTC TATAACTTGG TCCAGGACAA TTTATCCTAA 301 TATGTCCAAT CTCCCCACAT CCATAACATT CTCTGGAGTC ACTCATAGGC CCCTTGGAGA 361 AGTGTTGACC GGTCTGAGGT GGACCCCCAA CTACAGTCTG TAGTGAAGAC TGAATGGGTC 421 GAGCCGAGTA ACCTCCGGAA CCTTGTCCTC TAGAGTAAGA ACCCTTAAAC TCACCTCCCT 481 TTCGAAACCT CTTTGATGTT GATGTCGTGG TGAAGTCGTC TGGCTTCACT CCTTCCACTT 541 CTATCACAAA GTCTACCACT TCTTGGAAGG ATTTTGCCGT TGCCGCTACC TGTAAGGCCG 601 AAATCCGCAA TTCTGACCTC AACCCCTTCA CAAACCGGAG AATCCGCTCT TGAGGACTGA 661 AACAGAGTTG AGTGGCATAT CCGGATAGTG CACGGAACTT AGCCTCATAA GCATTAACCG 721 ACATCCTACC TTGCTCTAGG CTCAGGAACT CATCTCTTTT CCTATCCCTC AAAGTCCGGG 781 GGATATACTT Predicted gene structure (within gDNA segment 5996 to 3643): Exon 1 5040 4253 ( 788 n); cDNA 1 790 ( 790 n); score: 0.881 MATCH C06HBa0024L21.1-1- SGN-E356912+ 0.881 788 0.997 C PGS_C06HBa0024L21.1-1-_SGN-E356912+ (5040 4253) Alignment (genomic DNA sequence = upper lines): CAGGATCAAA CAATACAGAA GCCACGCAAT CACAAACCAA AAGATTACCT GTGATAACAA 4981 |||||||||| |||||| ||| |||| ||||| ||||||| | |||||||||| ||||| ||| CAGGATCAAA CAATACGGAA GCCATGCAAT CACAAACTAG AAGATTACCT GTGATGACAG 60 CATCAGATGT CTCCGCTTCA GACCGCCCAG GGAAAGCGTA ACAATGGGCC CTATCACCTG 4921 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||| || CATCAGATGC CTCCGCTTCA GACCGCCCAG GGAAAGCGTA ACAATGGGCC CTATCGTTTG 120 TCTGTTCGTT GCCTCTACCA GGTTGCGCTG CAGTAGTTCC CATTTGTCCG TCACCCCGGC 4861 |||| | || ||| |||||| |||| | || ||| | || |||| || | ||| | || TCTGCCCATT GCCCCTACCA TGTTGTGATG TAGTGGCCCC AGTTTGCCCA TTACCTCTGC 180 CGTTTTGGTG ACCACCATTA CCTCGGTCAC CACGCCCTCC AGAATGACGG CCTCTTCCAT 4801 |||||||||| |||||||||| ||||| ||| |||| ||||| ||||| |||| ||||| |||| CGTTTTGGTG ACCACCATTA CCTCGACCAC CACGTCCTCC AGAATAACGG CCTCTACCAT 240 GACCACCTCT ACCTCTGACT ATTTGAGGTC TGTAACTCTG TTTTGGACAA TACCTCTTAA 4741 |||||||||| |||||| || ||| | |||| | ||||| | | |||||| | || ||| GACCACCTCT ACCTCTAGCT ATTGGGGGTC TATAACTTGG TCCAGGACAA TTTATCCTAA 300 TTTGTCCAGT CTCCCCACAT CCATAACATT CTCTGGATTC AAGCATAGGT CTCTCAGAGA 4681 | |||||| | |||||||||| |||||||||| ||||||| || | |||||| | || |||| TATGTCCAAT CTCCCCACAT CCATAACATT CTCTGGAGTC ACTCATAGGC CCCTTGGAGA 360 AGTGTTGACC GGTCTGAGGT GGA--CCCAA CTACAGTCTG TAGTGAAGAC TGAATTGGTC 4623 |||||||||| |||||||||| ||| ||||| |||||||||| |||||||||| ||||| |||| AGTGTTGACC GGTCTGAGGT GGACCCCCAA CTACAGTCTG TAGTGAAGAC TGAATGGGTC 420 GGACTGAGTA ACCTCCTGAA TCCTGTTCTC TAGAGTAAGA ACCATTAAAC TCACCTCCCC 4563 | | ||||| |||||| ||| | ||| ||| |||||||||| ||| |||||| ||||||||| GAGCCGAGTA ACCTCCGGAA CCTTGTCCTC TAGAGTAAGA ACCCTTAAAC TCACCTCCCT 480 TTCGAAACCT TTTTGATGTC GATGCCATGG TGAAGTCATC TGGCTTCACT CCTTCCACCT 4503 |||||||||| |||||||| |||| | ||| ||||||| || |||||||||| |||||||| | TTCGAAACCT CTTTGATGTT GATGTCGTGG TGAAGTCGTC TGGCTTCACT CCTTCCACTT 540 CTATCACGAA GTCTACCACT TCTTGAAAGG ATTTTGCCGT AGCCGCTACC TGTAAGGCTG 4443 ||||||| || |||||||||| ||||| |||| |||||||||| ||||||||| |||||||| | CTATCACAAA GTCTACCACT TCTTGGAAGG ATTTTGCCGT TGCCGCTACC TGTAAGGCCG 600 AAATCCGCAA TTCTGACCTC AATCCCTTCA CAAAACGGCG AATCCGCTCT TGTGGACTGA 4383 |||||||||| |||||||||| || ||||||| |||| ||| | |||||||||| || ||||||| AAATCCGCAA TTCTGACCTC AACCCCTTCA CAAACCGGAG AATCCGCTCT TGAGGACTGA 660 AACAAAGTTG GGTGGCATAC CTGGATAATG CACGAAACTT AGCCTCATAT GCAGTAACCG 4323 |||| ||||| |||||||| | ||||| || |||| ||||| ||||||||| ||| |||||| AACAGAGTTG AGTGGCATAT CCGGATAGTG CACGGAACTT AGCCTCATAA GCATTAACCG 720 ACATCCTACC TTGCTCTAGG CTCAAGAACT CATCTCTTTT CCTATCCCTC AAAGTCCGGG 4263 |||||||||| |||||||||| |||| ||||| |||||||||| |||||||||| |||||||||| ACATCCTACC TTGCTCTAGG CTCAGGAACT CATCTCTTTT CCTATCCCTC AAAGTCCGGG 780 GGATATACTT 4253 |||||||||| GGATATACTT 790 hqPGS_C06HBa0024L21.1-1-_SGN-E356912+ (5040 4253) ******************************************************************************** EST sequence 45 +strand 698 n (File: SGN-E356209+) 1 TTCAGACCGC CCAGGGAAAG CGTAACAATG GGCCCTATCG TTCGTCTGTC CGTTGCCCCT 61 ACCATGTTGT GATGTAGTGG CCCCAGTTTG CCCATTACCT CTGCCATTTT GGTGACCACC 121 ATTACCTCGA CCACCACGTC CTCCAGAATA ACGGCCTCTA CCATGACCAC CTCTACCTCT 181 AGCTATTGGG GGTCTATAAC TTTGTCTGGG ACAATTTTTC CTAATATGTC CAATCTCCCC 241 ACATCCATAA CATTCTCTGG AGTCAAGCAT AGGCCCCTCG GAGAAGTGTT AACCGGTCTG 301 AGGTGGTCTC CCAACTACAG TCTGTAGTGA AGACTGAATT GGTCGGACTG AGTAACTTCC 361 CGAACCCTGT CCTCTAGTGT AAGAACCATT AAACTCACCT CCCTTCCGAA ACCTTTTTGA 421 TGTCGATGTT GTGGTGAAGT CGTCTGGCTT CACTCCTTCC ACTTCTATCA CAAAGTCTAC 481 CACTTCTTGG AAGGATTTTG CCGTTGCCGC TATCTGTAAG GACGAAATCC GCAATTCTGA 541 CCTCAACCCC TTCACAAACC GGCGAATCCG CTCTTGAGGA CTGAAACAGA GTTGAGTGGC 601 ATATCTGGAT AGTGCACGAA ACTTAGCCTC ATAAGCATTA ACCGACATCC TACCTTGCTC 661 TAGGCTCAAG AACTCATCCC TTTTCCTATC CCTCAAAG Predicted gene structure (within gDNA segment 5564 to 3659): Exon 1 4964 4269 ( 696 n); cDNA 1 698 ( 698 n); score: 0.886 MATCH C06HBa0024L21.1-1- SGN-E356209+ 0.886 696 0.997 C PGS_C06HBa0024L21.1-1-_SGN-E356209+ (4964 4269) Alignment (genomic DNA sequence = upper lines): TTCAGACCGC CCAGGGAAAG CGTAACAATG GGCCCTATCA CCTGTCTGTT CGTTGCCTCT 4905 |||||||||| |||||||||| |||||||||| ||||||||| |||||| ||||||| || TTCAGACCGC CCAGGGAAAG CGTAACAATG GGCCCTATCG TTCGTCTGTC CGTTGCCCCT 60 ACCAGGTTGC GCTGCAGTAG TTCCCATTTG TCCGTCACCC CGGCCGTTTT GGTGACCACC 4845 |||| |||| | || ||| | || |||| || | ||| | ||| |||| |||||||||| ACCATGTTGT GATGTAGTGG CCCCAGTTTG CCCATTACCT CTGCCATTTT GGTGACCACC 120 ATTACCTCGG TCACCACGCC CTCCAGAATG ACGGCCTCTT CCATGACCAC CTCTACCTCT 4785 ||||||||| ||||||| | ||||||||| ||||||||| |||||||||| |||||||||| ATTACCTCGA CCACCACGTC CTCCAGAATA ACGGCCTCTA CCATGACCAC CTCTACCTCT 180 GACTATTTGA GGTCTGTAAC TCTGTTTTGG ACAATACCTC TTAATTTGTC CAGTCTCCCC 4725 ||||| | ||||| |||| | ||| | || ||||| || |||| |||| || ||||||| AGCTATTGGG GGTCTATAAC TTTGTCTGGG ACAATTTTTC CTAATATGTC CAATCTCCCC 240 ACATCCATAA CATTCTCTGG ATTCAAGCAT AGGTCTCTCA GAGAAGTGTT GACCGGTCTG 4665 |||||||||| |||||||||| | |||||||| ||| | ||| |||||||||| ||||||||| ACATCCATAA CATTCTCTGG AGTCAAGCAT AGGCCCCTCG GAGAAGTGTT AACCGGTCTG 300 AGGTGG--AC CCAACTACAG TCTGTAGTGA AGACTGAATT GGTCGGACTG AGTAACCTCC 4607 |||||| | |||||||||| |||||||||| |||||||||| |||||||||| |||||| ||| AGGTGGTCTC CCAACTACAG TCTGTAGTGA AGACTGAATT GGTCGGACTG AGTAACTTCC 360 TGAATCCTGT TCTCTAGAGT AAGAACCATT AAACTCACCT CCCCTTCGAA ACCTTTTTGA 4547 ||| ||||| |||||| || |||||||||| |||||||||| ||| | |||| |||||||||| CGAACCCTGT CCTCTAGTGT AAGAACCATT AAACTCACCT CCCTTCCGAA ACCTTTTTGA 420 TGTCGATGCC ATGGTGAAGT CATCTGGCTT CACTCCTTCC ACCTCTATCA CGAAGTCTAC 4487 |||||||| ||||||||| | |||||||| |||||||||| || ||||||| | |||||||| TGTCGATGTT GTGGTGAAGT CGTCTGGCTT CACTCCTTCC ACTTCTATCA CAAAGTCTAC 480 CACTTCTTGA AAGGATTTTG CCGTAGCCGC TACCTGTAAG GCTGAAATCC GCAATTCTGA 4427 ||||||||| |||||||||| |||| ||||| || ||||||| | ||||||| |||||||||| CACTTCTTGG AAGGATTTTG CCGTTGCCGC TATCTGTAAG GACGAAATCC GCAATTCTGA 540 CCTCAATCCC TTCACAAAAC GGCGAATCCG CTCTTGTGGA CTGAAACAAA GTTGGGTGGC 4367 |||||| ||| |||||||| | |||||||||| |||||| ||| |||||||| | |||| ||||| CCTCAACCCC TTCACAAACC GGCGAATCCG CTCTTGAGGA CTGAAACAGA GTTGAGTGGC 600 ATACCTGGAT AATGCACGAA ACTTAGCCTC ATATGCAGTA ACCGACATCC TACCTTGCTC 4307 ||| |||||| | |||||||| |||||||||| ||| ||| || |||||||||| |||||||||| ATATCTGGAT AGTGCACGAA ACTTAGCCTC ATAAGCATTA ACCGACATCC TACCTTGCTC 660 TAGGCTCAAG AACTCATCTC TTTTCCTATC CCTCAAAG 4269 |||||||||| |||||||| | |||||||||| |||||||| TAGGCTCAAG AACTCATCCC TTTTCCTATC CCTCAAAG 698 hqPGS_C06HBa0024L21.1-1-_SGN-E356209+ (4964 4269) ******************************************************************************** EST sequence 34 +strand 763 n (File: SGN-E214046+) 1 ACGAATAGGC ATATCAAGAA ATTCACAATG TAAATTTAGA CCATTAGCAA ATGAGGAAGA 61 TACATAAGAA AACGTGGATC CAGGATCAAA CAATACGGAA GCCATGCAAT CACAAACAAG 121 AAGATTACCT GTGATGACAG CATCAGATGC CTCCGCTTTA GACCGCCCAG GGAAAGCGTA 181 ACAATGGGCC CTATAGTTTG TTTGTCCATT GCCCCTACCA TGTCGTGATG TAGTGGCCCC 241 AGTTTGTCCA TTACCTCTGC CGTTTTGGTG ACCACCATTG CCTCGACCAC CACGTCCTCC 301 AAAATAACGG CCTCTACCAT GACAACCTCT ACCTCTAACT ATTGGGGGTC TATAACTTGG 361 TCCGGGAAAA TTTCTCCTAA TATGTCCAAT CTCCCCACAT CCATAACATT CTCTAGAGTC 421 ACTCATAGGC CCCTCGGAGA AGTGTTGACC GGTCTGAGGT GGACCCCCAA CTACAGTTTG 481 TAGTGAAGAC TGAATGGGTC GAACTGAGTA ACCTCCAGAA CCTTGTCCTC TAGAGTAAGA 541 ACCCTTAAAC TCATCTCCCC TTTGAAACCT CATCGATGTC GATGTCGTGG TGAAGTCGTC 601 TGGTTTCACT CCTTCCACTT CTATCAAAAA GTCTACCACT TCTTGGAAGG ATTTTGCCGT 661 TGCCGCTACC TGTAAGGGCG AAATCCGCAA TTCTGACCTC AACCCCTTCA CAACCGGCGA 721 ATCCGCTCTT GAGGGACTGA ACAGAGTTGA GTGGCATATC TGG Predicted gene structure (within gDNA segment 5996 to 3461): Exon 1 5120 4359 ( 762 n); cDNA 1 763 ( 763 n); score: 0.863 MATCH C06HBa0024L21.1-1- SGN-E214046+ 0.863 762 0.999 C PGS_C06HBa0024L21.1-1-_SGN-E214046+ (5120 4359) Alignment (genomic DNA sequence = upper lines): ACGAATAGGC ATGTCAAGCA ATTCACAATG TAATTTAAGA CCATTAGCAA ATGAGGAAGA 5061 |||||||||| || ||||| | |||||||||| ||| || ||| |||||||||| |||||||||| ACGAATAGGC ATATCAAGAA ATTCACAATG TAAATTTAGA CCATTAGCAA ATGAGGAAGA 60 TACATAAGAA AATGTGGATC CAGGATCAAA CAATACAGAA GCCACGCAAT CACAAACCAA 5001 |||||||||| || ||||||| |||||||||| |||||| ||| |||| ||||| ||||||| | TACATAAGAA AACGTGGATC CAGGATCAAA CAATACGGAA GCCATGCAAT CACAAACAAG 120 AAGATTACCT GTGATAACAA CATCAGATGT CTCCGCTTCA GACCGCCCAG GGAAAGCGTA 4941 |||||||||| ||||| ||| ||||||||| |||||||| | |||||||||| |||||||||| AAGATTACCT GTGATGACAG CATCAGATGC CTCCGCTTTA GACCGCCCAG GGAAAGCGTA 180 ACAATGGGCC CTATCACCTG TCTGTTCGTT GCCTCTACCA GGTTGCGCTG CAGTAGTTCC 4881 |||||||||| |||| || | ||| | || ||| |||||| || | | || ||| | || ACAATGGGCC CTATAGTTTG TTTGTCCATT GCCCCTACCA TGTCGTGATG TAGTGGCCCC 240 CATTTGTCCG TCACCCCGGC CGTTTTGGTG ACCACCATTA CCTCGGTCAC CACGCCCTCC 4821 ||||||| | ||| | || |||||||||| ||||||||| ||||| ||| |||| ||||| AGTTTGTCCA TTACCTCTGC CGTTTTGGTG ACCACCATTG CCTCGACCAC CACGTCCTCC 300 AGAATGACGG CCTCTTCCAT GACCACCTCT ACCTCTGACT ATTTGAGGTC TGTAACTCTG 4761 | ||| |||| ||||| |||| ||| |||||| |||||| ||| ||| | |||| | ||||| | AAAATAACGG CCTCTACCAT GACAACCTCT ACCTCTAACT ATTGGGGGTC TATAACTTGG 360 TTTTGGACAA TACCTCTTAA TTTGTCCAGT CTCCCCACAT CCATAACATT CTCTGGATTC 4701 | ||| || | ||| ||| | |||||| | |||||||||| |||||||||| |||| || || TCCGGGAAAA TTTCTCCTAA TATGTCCAAT CTCCCCACAT CCATAACATT CTCTAGAGTC 420 AAGCATAGGT CTCTCAGAGA AGTGTTGACC GGTCTGAGGT GGA--CCCAA CTACAGTCTG 4643 | |||||| | ||| |||| |||||||||| |||||||||| ||| ||||| ||||||| || ACTCATAGGC CCCTCGGAGA AGTGTTGACC GGTCTGAGGT GGACCCCCAA CTACAGTTTG 480 TAGTGAAGAC TGAATTGGTC GGACTGAGTA ACCTCCTGAA TCCTGTTCTC TAGAGTAAGA 4583 |||||||||| ||||| |||| | |||||||| |||||| ||| | ||| ||| |||||||||| TAGTGAAGAC TGAATGGGTC GAACTGAGTA ACCTCCAGAA CCTTGTCCTC TAGAGTAAGA 540 ACCATTAAAC TCACCTCCCC TTCGAAACCT TTTTGATGTC GATGCCATGG TGAAGTCATC 4523 ||| |||||| ||| |||||| || ||||||| | |||||| |||| | ||| ||||||| || ACCCTTAAAC TCATCTCCCC TTTGAAACCT CATCGATGTC GATGTCGTGG TGAAGTCGTC 600 TGGCTTCACT CCTTCCACCT CTATCACGAA GTCTACCACT TCTTGAAAGG ATTTTGCCGT 4463 ||| |||||| |||||||| | |||||| || |||||||||| ||||| |||| |||||||||| TGGTTTCACT CCTTCCACTT CTATCAAAAA GTCTACCACT TCTTGGAAGG ATTTTGCCGT 660 AGCCGCTACC TGTAAGGCTG AAATCCGCAA TTCTGACCTC AATCCCTTCA CAAAACGGCG 4403 ||||||||| ||||||| | |||||||||| |||||||||| || ||||||| | || ||||| TGCCGCTACC TGTAAGGGCG AAATCCGCAA TTCTGACCTC AACCCCTTCA C-AACCGGCG 719 AATCCGCTCT TG-TGGACTG AAACAAAGTT GGGTGGCATA CCTGG 4359 |||||||||| || |||||| |||| |||| | |||||||| |||| AATCCGCTCT TGAGGGACTG -AACAGAGTT GAGTGGCATA TCTGG 763 hqPGS_C06HBa0024L21.1-1-_SGN-E214046+ (5120 4359) ******************************************************************************** EST sequence 31 +strand 533 n (File: SGN-E353805+) 1 GGATCAACAA TACGGAAGCC ATGCAATCAC AAACTAGAAG ATTACCTGTG ATGACAGCAT 61 CAGATGCCTC CGCTTCAGAC CGCCCAGGGA AAGCGTAACA ATGGGCCCTA TCGTTTGTCT 121 GCCCATTGCC CCTACCATGT TGTGATGTAG TGGCCCCAGT TTGCCCATTA CCTCTGCCGT 181 TTTGGTGACC ACCATTACCT CGACCACCAC GTCCTCCAGA ATAACGGCCT CTACCATGAC 241 CACCTCTACC TCTAGCTATT GGGGGTCTAT AACTTGGTCC AGGACAATTT ATCCTAATAT 301 GTCCAATCTC CCCACATCCA TAACATTCTC TGGAGTCACT CATAGGCCCC TTGGAGAAGT 361 GTTGACCGGT CTGAGGTGGA CCCCCAACTA CAGTCTGTAG TGAAGACTGA ATGGGTCGAG 421 CCGAGTAACC TCCGGAACCT TGTCCTCTAA AGTAAGAACC CTTAAACTCA CCTCCCTTTC 481 GAAACCTCTT TGATGTTGAT GTCGTGGTGA AGTCGTCTGG CTTCACTCCT TCC Predicted gene structure (within gDNA segment 5996 to 2808): Exon 1 5038 4507 ( 532 n); cDNA 1 533 ( 533 n); score: 0.853 MATCH C06HBa0024L21.1-1- SGN-E353805+ 0.853 532 0.998 C PGS_C06HBa0024L21.1-1-_SGN-E353805+ (5038 4507) Alignment (genomic DNA sequence = upper lines): GGATCAAACA ATACAGAAGC CACGCAATCA CAAACCAAAA GATTACCTGT GATAACAACA 4979 ||||| |||| |||| ||||| || ||||||| ||||| | || |||||||||| ||| ||| || GGATC-AACA ATACGGAAGC CATGCAATCA CAAACTAGAA GATTACCTGT GATGACAGCA 59 TCAGATGTCT CCGCTTCAGA CCGCCCAGGG AAAGCGTAAC AATGGGCCCT ATCACCTGTC 4919 ||||||| || |||||||||| |||||||||| |||||||||| |||||||||| ||| |||| TCAGATGCCT CCGCTTCAGA CCGCCCAGGG AAAGCGTAAC AATGGGCCCT ATCGTTTGTC 119 TGTTCGTTGC CTCTACCAGG TTGCGCTGCA GTAGTTCCCA TTTGTCCGTC ACCCCGGCCG 4859 || | |||| | |||||| | ||| | || | || | || |||| || | ||| | |||| TGCCCATTGC CCCTACCATG TTGTGATGTA GTGGCCCCAG TTTGCCCATT ACCTCTGCCG 179 TTTTGGTGAC CACCATTACC TCGGTCACCA CGCCCTCCAG AATGACGGCC TCTTCCATGA 4799 |||||||||| |||||||||| ||| ||||| || ||||||| ||| |||||| ||| |||||| TTTTGGTGAC CACCATTACC TCGACCACCA CGTCCTCCAG AATAACGGCC TCTACCATGA 239 CCACCTCTAC CTCTGACTAT TTGAGGTCTG TAACTCTGTT TTGGACAATA CCTCTTAATT 4739 |||||||||| |||| |||| | | ||||| ||||| || ||||||| || |||| CCACCTCTAC CTCTAGCTAT TGGGGGTCTA TAACTTGGTC CAGGACAATT TATCCTAATA 299 TGTCCAGTCT CCCCACATCC ATAACATTCT CTGGATTCAA GCATAGGTCT CTCAGAGAAG 4679 |||||| ||| |||||||||| |||||||||| ||||| ||| |||||| | || |||||| TGTCCAATCT CCCCACATCC ATAACATTCT CTGGAGTCAC TCATAGGCCC CTTGGAGAAG 359 TGTTGACCGG TCTGAGGTGG A--CCCAACT ACAGTCTGTA GTGAAGACTG AATTGGTCGG 4621 |||||||||| |||||||||| | ||||||| |||||||||| |||||||||| ||| ||||| TGTTGACCGG TCTGAGGTGG ACCCCCAACT ACAGTCTGTA GTGAAGACTG AATGGGTCGA 419 ACTGAGTAAC CTCCTGAATC CTGTTCTCTA GAGTAAGAAC CATTAAACTC ACCTCCCCTT 4561 | ||||||| |||| ||| | ||| ||||| ||||||||| | |||||||| ||||||| || GCCGAGTAAC CTCCGGAACC TTGTCCTCTA AAGTAAGAAC CCTTAAACTC ACCTCCCTTT 479 CGAAACCTTT TTGATGTCGA TGCCATGGTG AAGTCATCTG GCTTCACTCC TTCC 4507 |||||||| | ||||||| || || | ||||| ||||| |||| |||||||||| |||| CGAAACCTCT TTGATGTTGA TGTCGTGGTG AAGTCGTCTG GCTTCACTCC TTCC 533 hqPGS_C06HBa0024L21.1-1-_SGN-E353805+ (5038 4507) ******************************************************************************** EST sequence 36 +strand 559 n (File: SGN-E244046+) 1 AAACACGAAT AGGCATATCA AGTAATTCAC AATGTAAAGT TAGACCATTA GCAAATGAGG 61 AAGATACATA AGAAAATGTG GATCCAGGAT CAAACAATAC AGAAGCCATG CAATCACAAA 121 CCAAAAGATT ACCTGTGATG ACAACATCAG ATTCCTCCGC TTCAGACCGC CCAGGGAAAG 181 CGTAACAATG GGCCCTATCA TTCTTATGTC TGTTGCCCCT ACCATGTTGT GATGTAGTGG 241 CTCCAGTTTG CCCATCACCT CGGCCGTTTT GGTGACCACC ATTTCCTCGA CCGCCACGTC 301 CTCCAGAATA ACGGACTCTG CCATGACCAC CTCTACCTCT AACCTTTGGA GGTCTGTAAC 361 TCTGTTTTGG ACAATATCTC TTAATATGTC CAATCTCCCC ACACCCATAG CACTCTCTGG 421 GTTCATGCAT AAGTCTCTCA GAGAAGTGTT GACCGGTCGA AGGTGGACCC CCAACTACAG 481 TCTGTAGTGA AGACTGAATT GGTCGGACTG AGTAACTTCC CGAACCCTGT CCTCTAGTGT 541 AAGCACCATT AAACTCACC Predicted gene structure (within gDNA segment 5996 to 3571): Exon 1 5124 4568 ( 557 n); cDNA 1 559 ( 559 n); score: 0.889 MATCH C06HBa0024L21.1-1- SGN-E244046+ 0.889 557 0.996 C PGS_C06HBa0024L21.1-1-_SGN-E244046+ (5124 4568) Alignment (genomic DNA sequence = upper lines): AAACACGAAT AGGCATGTCA AGCAATTCAC AATGTAATTT AAGACCATTA GCAAATGAGG 5065 |||||||||| |||||| ||| || ||||||| ||||||| | ||||||||| |||||||||| AAACACGAAT AGGCATATCA AGTAATTCAC AATGTAAAGT TAGACCATTA GCAAATGAGG 60 AAGATACATA AGAAAATGTG GATCCAGGAT CAAACAATAC AGAAGCCACG CAATCACAAA 5005 |||||||||| |||||||||| |||||||||| |||||||||| |||||||| | |||||||||| AAGATACATA AGAAAATGTG GATCCAGGAT CAAACAATAC AGAAGCCATG CAATCACAAA 120 CCAAAAGATT ACCTGTGATA ACAACATCAG ATGTCTCCGC TTCAGACCGC CCAGGGAAAG 4945 |||||||||| ||||||||| |||||||||| || |||||| |||||||||| |||||||||| CCAAAAGATT ACCTGTGATG ACAACATCAG ATTCCTCCGC TTCAGACCGC CCAGGGAAAG 180 CGTAACAATG GGCCCTATCA CCTGTCTGTT CGTTGCCTCT ACCAGGTTGC GCTGCAGTAG 4885 |||||||||| |||||||||| | ||| |||||| || |||| |||| | || ||| | CGTAACAATG GGCCCTATCA TTCTTATGTC TGTTGCCCCT ACCATGTTGT GATGTAGTGG 240 TTCCCATTTG TCCGTCACCC CGGCCGTTTT GGTGACCACC ATTACCTCGG TCACCACGCC 4825 ||| |||| || ||||| |||||||||| |||||||||| ||| ||||| | ||||| | CTCCAGTTTG CCCATCACCT CGGCCGTTTT GGTGACCACC ATTTCCTCGA CCGCCACGTC 300 CTCCAGAATG ACGGCCTCTT CCATGACCAC CTCTACCTCT GACTATTTGA GGTCTGTAAC 4765 ||||||||| |||| |||| |||||||||| |||||||||| || || || |||||||||| CTCCAGAATA ACGGACTCTG CCATGACCAC CTCTACCTCT AACCTTTGGA GGTCTGTAAC 360 TCTGTTTTGG ACAATACCTC TTAATTTGTC CAGTCTCCCC ACATCCATAA CATTCTCTGG 4705 |||||||||| |||||| ||| ||||| |||| || ||||||| ||| ||||| || ||||||| TCTGTTTTGG ACAATATCTC TTAATATGTC CAATCTCCCC ACACCCATAG CACTCTCTGG 420 ATTCAAGCAT AGGTCTCTCA GAGAAGTGTT GACCGGTCTG AGGTGGA--C CCAACTACAG 4647 |||| |||| | |||||||| |||||||||| |||||||| ||||||| | |||||||||| GTTCATGCAT AAGTCTCTCA GAGAAGTGTT GACCGGTCGA AGGTGGACCC CCAACTACAG 480 TCTGTAGTGA AGACTGAATT GGTCGGACTG AGTAACCTCC TGAATCCTGT TCTCTAGAGT 4587 |||||||||| |||||||||| |||||||||| |||||| ||| ||| ||||| |||||| || TCTGTAGTGA AGACTGAATT GGTCGGACTG AGTAACTTCC CGAACCCTGT CCTCTAGTGT 540 AAGAACCATT AAACTCACC 4568 ||| |||||| ||||||||| AAGCACCATT AAACTCACC 559 hqPGS_C06HBa0024L21.1-1-_SGN-E244046+ (5124 4568) ******************************************************************************** EST sequence 42 +strand 543 n (File: SGN-E355026+) 1 GAACACATCC AAAAATTCTC AAACTACCAA AACTAATTCA ATTGAGGGTA CTTGGATAGT 61 GTCATCCTTG AGATGTGCCA AGAAGGATAG ACAACCCTTA CTAACCATCT TCTGAGCACA 121 AAGAAAGGAG ATAATACGCA CCGGATTGGA AGTGTAGTCA CCCTCCCACA CTAACGGATC 181 TGTCCCAGGC TTGGCTAACG TCACCGTTTT AGCATTACAA TCCAAGATCG CAAAATTGGG 241 AGAAAGCCAA GTCATACCCA GAATTACATC AAAGTCACCC ATTTCTAAAG TAACCAAATC 301 TAGATAAGTG TTGCTCCCCA CGAAATTCAC CAAACAAGAC CTATGTACCT TTTCAACTAT 361 CACAGACTCA CCCACCGGAG TAGAAACACG AATAGGCATG TCAAGTAATT CACAATGCAA 421 TTTTAGACCA TTAGCAAATG ATGAAGATAC ATATGAAAAC GTGGAGCCAG GGTCAAATAA 481 TACAGATGCC ATGCAATCAC AAACCAAGAG ATTACCTGTG ATAACAGCAT CAGACGCCTC 541 TGC Predicted gene structure (within gDNA segment 5996 to 3113): Exon 1 5506 4965 ( 542 n); cDNA 2 543 ( 542 n); score: 0.889 MATCH C06HBa0024L21.1-1- SGN-E355026+ 0.889 542 0.998 C PGS_C06HBa0024L21.1-1-_SGN-E355026+ (5506 4965) Alignment (genomic DNA sequence = upper lines): AAAACATCTA GAAACTCACG GACTATCGAA ACCGACTCAA TTGAAGGTAC TTGGGTAATA 5447 || ||||| | ||| || | |||| | || || | |||| |||| ||||| |||| || | AACACATCCA AAAATTCTCA AACTACCAAA ACTAATTCAA TTGAGGGTAC TTGGATAGTG 61 TCATCCCTGA GGTGTGCCAA GAAAGCTAAA CAACCCTTAC TAACCATTCT CTTAGCACGA 5387 |||||| ||| | |||||||| ||| | || | |||||||||| ||||||| | || ||||| | TCATCCTTGA GATGTGCCAA GAAGGATAGA CAACCCTTAC TAACCATCTT CTGAGCACAA 121 AGAAAGGAGA CAATACGAAC CGGGTTGGAA GTGTAGTCAC CCTCCCACAC TAACGGATCT 5327 |||||||||| |||||| || ||| |||||| |||||||||| |||||||||| |||||||||| AGAAAGGAGA TAATACGCAC CGGATTGGAA GTGTAGTCAC CCTCCCACAC TAACGGATCT 181 GTCCCAGGCT TGGCTAACGT CACAGTTTTA GCATTACAAT CCAAGATTGC AAAATTTGGA 5267 |||||||||| |||||||||| ||| |||||| |||||||||| ||||||| || |||||| ||| GTCCCAGGCT TGGCTAACGT CACCGTTTTA GCATTACAAT CCAAGATCGC AAAATTGGGA 241 GAAAGCCAAG TCATACCCAG AATTACATCG AAGTCAACCA TTTCTAAGAT AACCAAGTCT 5207 |||||||||| |||||||||| ||||||||| |||||| ||| ||||||| | |||||| ||| GAAAGCCAAG TCATACCCAG AATTACATCA AAGTCACCCA TTTCTAAAGT AACCAAATCT 301 ACATGAGTAT TGCTCCCCAC AAAAGTCACC AGACAAGACC TATACACCTT TTCAACTATC 5147 | || ||| | |||||||||| ||| ||||| | |||||||| ||| ||||| |||||||||| AGATAAGTGT TGCTCCCCAC GAAATTCACC AAACAAGACC TATGTACCTT TTCAACTATC 361 ACAGACTCAC CCACCGGAGT AGAAACACGA ATAGGCATGT CAAGCAATTC ACAATGTAAT 5087 |||||||||| |||||||||| |||||||||| |||||||||| |||| ||||| |||||| ||| ACAGACTCAC CCACCGGAGT AGAAACACGA ATAGGCATGT CAAGTAATTC ACAATGCAAT 421 TTAAGACCAT TAGCAAATGA GGAAGATACA TAAGAAAATG TGGATCCAGG ATCAAACAAT 5027 || ||||||| |||||||||| ||||||||| || ||||| | |||| ||||| ||||| ||| TTTAGACCAT TAGCAAATGA TGAAGATACA TATGAAAACG TGGAGCCAGG GTCAAATAAT 481 ACAGAAGCCA CGCAATCACA AACCAAAAGA TTACCTGTGA TAACAACATC AGATGTCTCC 4967 ||||| |||| ||||||||| |||||| ||| |||||||||| ||||| |||| ||| | ||| ACAGATGCCA TGCAATCACA AACCAAGAGA TTACCTGTGA TAACAGCATC AGACGCCTCT 541 GC 4965 || GC 543 hqPGS_C06HBa0024L21.1-1-_SGN-E355026+ (5506 4965) ******************************************************************************** EST sequence 41 +strand 761 n (File: SGN-E355244+) 1 CGGAAACTCC CATCCTTCTT CTTCACAAAC AAAATCGGAG CACCCCAAGG AGATGCACTT 61 GGTCTAATGA AACCTTTGCT CAACAACTCT TGAAGTTGGG CCTTTAACTC TCTTAACTCT 121 ACGGGAGCCA TTCTATAAGG GGGTATAGAA ATGGGGCGTG TGCCCGGTTC AAGATCGATA 181 CAGAAGTCAA TATCCCTATC TGGTGGCATA CCAGGAAGAT CTGCAGGGAA CACATCCAAA 241 AACTCACAGA CTATAAAAAC CGACTCAATC GAAGGTACTT GGGTAGTGTC ATCCTTGAGA 301 TGTGCCAAGA AAGCTAAACA CCCTTTACTA ACCATTTTCT TAGCACGAAG AAAGGAGATG 361 ATGCACACCG GATTGGAAGT GTAGTCACCC TCCCACACTA ACGGATCTGT CCCAGGCTTG 421 GCTAATGTCA CCGTTTTAGC ATTACAATCC AAGATCGCAA ATTGCGGAGA AAGCCAAGTC 481 ATACCCAGAA TTACATCAAA ATCAACCATT TCTAAGATAA CCAAATCTAC ATAAGTGTTG 541 CTCCCCACAA AGTTCACCAA ACAAGACCTA TATACCTTTT CAACTACCAC AGACTCACCC 601 ACCGGAGTAG AAACACGAAT AGGCATATCA AGTAATTCAC AATGTAAATT TAGACCGTTA 661 GCAAATGAGG AAGATACANT AGAAAACGTG GATCCCAGGA TCAACAATAC AGAAGCCATG 721 CAATCACAAT CGAAAGATTA CCTGTGATGA CAGCATCTAA T Predicted gene structure (within gDNA segment 5996 to 4246): Exon 1 5650 4973 ( 678 n); cDNA 85 761 ( 677 n); score: 0.902 MATCH C06HBa0024L21.1-1- SGN-E355244+ 0.902 678 0.891 C PGS_C06HBa0024L21.1-1-_SGN-E355244+ (5650 4973) Alignment (genomic DNA sequence = upper lines): AACTCTTGAA GTTGAGCCTT TAACTCTCTT AACTCTGCGG GAGCCATTCT ATAAGGGGGT 5591 |||||||||| |||| ||||| |||||||||| |||||| ||| |||||||||| |||||||||| AACTCTTGAA GTTGGGCCTT TAACTCTCTT AACTCTACGG GAGCCATTCT ATAAGGGGGT 144 ATAGAAATGG GGCGAGTACT CGGTTCAAGA TCGATGCAAA AGTCAATATC CCTATCCGGT 5531 |||||||||| |||| || | |||||||||| ||||| || | |||||||||| |||||| ||| ATAGAAATGG GGCGTGTGCC CGGTTCAAGA TCGATACAGA AGTCAATATC CCTATCTGGT 204 GGCATACCAG GAAGGTCTGC GGGAAAAACA TCTAGAAACT CACGGACTAT CGAAACCGAC 5471 |||||||||| |||| ||||| || || ||| || | ||||| ||| |||||| |||||||| GGCATACCAG GAAGATCTGC AGGGAACACA TCCAAAAACT CACAGACTAT AAAAACCGAC 264 TCAATTGAAG GTACTTGGGT AATATCATCC CTGAGGTGTG CCAAGAAAGC TAAACAACCC 5411 ||||| |||| |||||||||| | | |||||| |||| |||| |||||||||| |||||| || TCAATCGAAG GTACTTGGGT AGTGTCATCC TTGAGATGTG CCAAGAAAGC TAAACACCCT 324 TTACTAACCA TTCTCTTAGC ACGAAGAAAG GAGACAATAC GAACCGGGTT GGAAGTGTAG 5351 |||||||||| || ||||||| |||||||||| |||| || | ||||| || |||||||||| TTACTAACCA TTTTCTTAGC ACGAAGAAAG GAGATGATGC ACACCGGATT GGAAGTGTAG 384 TCACCCTCCC ACACTAACGG ATCTGTCCCA GGCTTGGCTA ACGTCACAGT TTTAGCATTA 5291 |||||||||| |||||||||| |||||||||| |||||||||| | ||||| || |||||||||| TCACCCTCCC ACACTAACGG ATCTGTCCCA GGCTTGGCTA ATGTCACCGT TTTAGCATTA 444 CAATCCAAGA TTGCAAAATT TGGAGAAAGC CAAGTCATAC CCAGAATTAC ATCGAAGTCA 5231 |||||||||| | ||||| | ||||||||| |||||||||| |||||||||| ||| || ||| CAATCCAAGA TCGCAAATTG CGGAGAAAGC CAAGTCATAC CCAGAATTAC ATCAAAATCA 504 ACCATTTCTA AGATAACCAA GTCTACATGA GTATTGCTCC CCACAAAAGT CACCAGACAA 5171 |||||||||| |||||||||| ||||||| | || ||||||| ||||||| | ||||| |||| ACCATTTCTA AGATAACCAA ATCTACATAA GTGTTGCTCC CCACAAAGTT CACCAAACAA 564 GACCTATACA CCTTTTCAAC TATCACAGAC TCACCCACCG GAGTAGAAAC ACGAATAGGC 5111 |||||||| | |||||||||| || ||||||| |||||||||| |||||||||| |||||||||| GACCTATATA CCTTTTCAAC TACCACAGAC TCACCCACCG GAGTAGAAAC ACGAATAGGC 624 ATGTCAAGCA ATTCACAATG TAATTTAAGA CCATTAGCAA ATGAGGAAGA TACATAAGAA 5051 || ||||| | |||||||||| ||| || ||| || ||||||| |||||||||| |||| |||| ATATCAAGTA ATTCACAATG TAAATTTAGA CCGTTAGCAA ATGAGGAAGA TACANTAGAA 684 AATGTGGAT- CCAGGATCAA ACAATACAGA AGCCACGCAA TCACAAACCA AAAGATTACC 4992 || |||||| |||||||| | |||||||||| ||||| |||| |||| || | |||||||||| AACGTGGATC CCAGGATC-A ACAATACAGA AGCCATGCAA TCAC-AATCG AAAGATTACC 742 TGTGATAACA ACATCAGAT 4973 |||||| ||| |||| || TGTGATGACA GCATCTAAT 761 hqPGS_C06HBa0024L21.1-1-_SGN-E355244+ (5650 4973) ******************************************************************************** EST sequence 32 +strand 331 n (File: SGN-E352716+) 1 GATCTGTCCC AGGCTTGGCT AACGTCACAG TTTTAGCATT ACAATCCAAG ATTGCAAAAT 61 TTGGAGAAAG CCAAGTCATA CCCAGAATTA CATCAAAATC AACCATTTCT AAGATAACCA 121 AGTCTACATA AGTATTGCTC CCCACAAAAG TCACCAGACC AGACCTATAT ACTTTTTCAA 181 CTATCACAGA CTCACCCACC GGAGTAGAAA CACGAATAGG CATGTCAAGC AATTCATAAT 241 TTAATTTAAG ACCAGTAGCA AATGAGGAAG ATACATATGA AAATGTGGAT CCAGGGTCAA 301 ATAATACAAA AGCCATGCAA TCACAAAAAA A Predicted gene structure (within gDNA segment 5931 to 4067): Exon 1 5331 5001 ( 331 n); cDNA 1 331 ( 331 n); score: 0.952 MATCH C06HBa0024L21.1-1- SGN-E352716+ 0.952 331 1.000 C PGS_C06HBa0024L21.1-1-_SGN-E352716+ (5331 5001) Alignment (genomic DNA sequence = upper lines): GATCTGTCCC AGGCTTGGCT AACGTCACAG TTTTAGCATT ACAATCCAAG ATTGCAAAAT 5272 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATCTGTCCC AGGCTTGGCT AACGTCACAG TTTTAGCATT ACAATCCAAG ATTGCAAAAT 60 TTGGAGAAAG CCAAGTCATA CCCAGAATTA CATCGAAGTC AACCATTTCT AAGATAACCA 5212 |||||||||| |||||||||| |||||||||| |||| || || |||||||||| |||||||||| TTGGAGAAAG CCAAGTCATA CCCAGAATTA CATCAAAATC AACCATTTCT AAGATAACCA 120 AGTCTACATG AGTATTGCTC CCCACAAAAG TCACCAGACA AGACCTATAC ACCTTTTCAA 5152 ||||||||| |||||||||| |||||||||| ||||||||| ||||||||| || ||||||| AGTCTACATA AGTATTGCTC CCCACAAAAG TCACCAGACC AGACCTATAT ACTTTTTCAA 180 CTATCACAGA CTCACCCACC GGAGTAGAAA CACGAATAGG CATGTCAAGC AATTCACAAT 5092 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||| ||| CTATCACAGA CTCACCCACC GGAGTAGAAA CACGAATAGG CATGTCAAGC AATTCATAAT 240 GTAATTTAAG ACCATTAGCA AATGAGGAAG ATACATAAGA AAATGTGGAT CCAGGATCAA 5032 ||||||||| |||| ||||| |||||||||| ||||||| || |||||||||| ||||| |||| TTAATTTAAG ACCAGTAGCA AATGAGGAAG ATACATATGA AAATGTGGAT CCAGGGTCAA 300 ACAATACAGA AGCCACGCAA TCACAAACCA A 5001 | |||||| | ||||| |||| ||||||| | | ATAATACAAA AGCCATGCAA TCACAAAAAA A 331 hqPGS_C06HBa0024L21.1-1-_SGN-E352716+ (5331 5001) ******************************************************************************** EST sequence 11 -strand 659 n (File: SGN-E352117-) 1 CCCAAGGGGA TGCACTTGGC NTAATGAAGC CCTTACNTAA CAACTCTTGA AGTTGGGCCT 61 TTAACTCCCC CAACTCAGCG GGAGCCATTC TATAAGGGGG TATGGAAATG GGGTGATCAC 121 CCGGCTCCAG ATCAATGCAA AAGTCAATAT CCCTATCCGG TGGCATACCA GGAAGGTCTG 181 CAGGAAACAC ATCCAGAAAC TCACGGACTA TCGAAACTGA CTCAATTGAA GGTACTTGGG 241 TAGTATCATC CCTGAGGTGT GCCAAGAAAG CTAAACACCC TTTACTAACC ATTCTCTTAG 301 CACAAAGAAA GGAGATGATA CGAACTGGAG TGGAAGTGTA GTCACCCTCC CACACTAACG 361 CATCTATCTC AGGCTTGGCC AACGTTACAG TTTTAGCATT ACAATCCAAG ATTGCAAAAT 421 TTGGAGACAG CCAAGTCATA CCCAGAATTA CATCGAAGTC AACCATTTAT AGGATAACCA 481 AGTCTACATG AGTATTGCTC CCACAAATGT CACAAGACAA GACCTATACA CCTTTTCAAC 541 AATCACAGAC TCACCCACCG GAGTAGAACA CGAATAGGTA TGTCAAGCGA TTCACTATGT 601 AAATTAAGAA CAGTAGCAAA TGAGGAAGAT ACATATGAAA ATGTGGAGGC AGGATCAAA Predicted gene structure (within gDNA segment 5996 to 3613): Exon 1 5639 5031 ( 609 n); cDNA 53 659 ( 607 n); score: 0.921 MATCH C06HBa0024L21.1-1- SGN-E352117- 0.921 609 0.924 C PGS_C06HBa0024L21.1-1-_SGN-E352117- (5639 5031) Alignment (genomic DNA sequence = upper lines): TTGAGCCTTT AACTCTCTTA ACTCTGCGGG AGCCATTCTA TAAGGGGGTA TAGAAATGGG 5580 ||| |||||| ||||| | | |||| ||||| |||||||||| |||||||||| | |||||||| TTGGGCCTTT AACTCCCCCA ACTCAGCGGG AGCCATTCTA TAAGGGGGTA TGGAAATGGG 112 GCGAGTACTC GGTTCAAGAT CGATGCAAAA GTCAATATCC CTATCCGGTG GCATACCAGG 5520 | || || | || || |||| | |||||||| |||||||||| |||||||||| |||||||||| GTGATCACCC GGCTCCAGAT CAATGCAAAA GTCAATATCC CTATCCGGTG GCATACCAGG 172 AAGGTCTGCG GGAAAAACAT CTAGAAACTC ACGGACTATC GAAACCGACT CAATTGAAGG 5460 ||||||||| ||||| |||| | |||||||| |||||||||| ||||| |||| |||||||||| AAGGTCTGCA GGAAACACAT CCAGAAACTC ACGGACTATC GAAACTGACT CAATTGAAGG 232 TACTTGGGTA ATATCATCCC TGAGGTGTGC CAAGAAAGCT AAACAACCCT TACTAACCAT 5400 |||||||||| ||||||||| |||||||||| |||||||||| ||||| || | |||||||||| TACTTGGGTA GTATCATCCC TGAGGTGTGC CAAGAAAGCT AAACACCCTT TACTAACCAT 292 TCTCTTAGCA CGAAGAAAGG AGACAATACG AACCGGGTTG GAAGTGTAGT CACCCTCCCA 5340 |||||||||| | |||||||| ||| ||||| ||| || || |||||||||| |||||||||| TCTCTTAGCA CAAAGAAAGG AGATGATACG AACTGGAGTG GAAGTGTAGT CACCCTCCCA 352 CACTAACGGA TCTGTCCCAG GCTTGGCTAA CGTCACAGTT TTAGCATTAC AATCCAAGAT 5280 |||||||| | ||| || ||| ||||||| || ||| |||||| |||||||||| |||||||||| CACTAACGCA TCTATCTCAG GCTTGGCCAA CGTTACAGTT TTAGCATTAC AATCCAAGAT 412 TGCAAAATTT GGAGAAAGCC AAGTCATACC CAGAATTACA TCGAAGTCAA CCATTTCTAA 5220 |||||||||| ||||| |||| |||||||||| |||||||||| |||||||||| |||||| || TGCAAAATTT GGAGACAGCC AAGTCATACC CAGAATTACA TCGAAGTCAA CCATTTATAG 472 GATAACCAAG TCTACATGAG TATTGCTCCC CACAAAAGTC ACCAGACAAG ACCTATACAC 5160 |||||||||| |||||||||| ||||||| || |||||| ||| || ||||||| |||||||||| GATAACCAAG TCTACATGAG TATTGCT-CC CACAAATGTC ACAAGACAAG ACCTATACAC 531 CTTTTCAACT ATCACAGACT CACCCACCGG AGTAGAAACA CGAATAGGCA TGTCAAGCAA 5100 ||||||||| |||||||||| |||||||||| ||||| |||| |||||||| | |||||||| | CTTTTCAACA ATCACAGACT CACCCACCGG AGTAG-AACA CGAATAGGTA TGTCAAGCGA 590 TTCACAATGT AATTTAAGAC CATTAGCAAA TGAGGAAGAT ACATAAGAAA ATGTGGATCC 5040 ||||| |||| || |||||| || ||||||| |||||||||| ||||| |||| ||||||| | TTCACTATGT AAATTAAGAA CAGTAGCAAA TGAGGAAGAT ACATATGAAA ATGTGGAGGC 650 AGGATCAAA 5031 ||||||||| AGGATCAAA 659 hqPGS_C06HBa0024L21.1-1-_SGN-E352117- (5639 5031) ******************************************************************************** EST sequence 35 +strand 661 n (File: SGN-E351414+) 1 CGGAAACTCC CATCCTTCTT CTTCACAAAC AAAATCGGAG CACCCCAAGG AGATGCACTT 61 GGTCTAATGA AACCTTTGCT CAACAACTCT TGAAGTTGGG CCTTTAACTC TCTTAACTCT 121 ACGGGAGCCA TTCTATAAGG GGGTATAGAA ATGGGGCGTG TGCCCGGTTC AAGATCGATA 181 CAGAAGTCAA TATCCCTATC TGGTGGCATA CCAGGAAGAT CTGCAGGGAA CACATCCAAA 241 AACTCACAGA CTATAAAAAC CGACTCAATC GAAGGTACTT GGGTAGTGTC ATCCTTGAGA 301 TGTGCCAAGA AAGCTAAACA CCCTTTACTA ACCATTTTCT TAGCACGAAG AAAGGAGATG 361 ATGCACACCG GATTGGAAGT GTAGTCACCC TCCCACACTA ACGGATCTGT CCCAGGCTTG 421 GCTAATGTCA CCGTTTTAGC ATTACAATCC AAGATCGCAA ATTGCGGAGA AAGCCAAGTC 481 ATACCCAGAA TTACATCAAA ATCAACCATT TCTAAGATAA CCAAATCTAC ATAAGTGTTG 541 CTCCCCACAA AGTTCACCAA ACAAGACCTA TATACCTTTT CAACTACCAC AGACTCACCC 601 ACCGGAGTAG AAACACGAAT AGGCATATCA AGTAATTCAC AATGTAAATT TAGACCGTTA 661 G Predicted gene structure (within gDNA segment 5996 to 4149): Exon 1 5650 5074 ( 577 n); cDNA 85 661 ( 577 n); score: 0.910 MATCH C06HBa0024L21.1-1- SGN-E351414+ 0.910 577 0.873 C PGS_C06HBa0024L21.1-1-_SGN-E351414+ (5650 5074) Alignment (genomic DNA sequence = upper lines): AACTCTTGAA GTTGAGCCTT TAACTCTCTT AACTCTGCGG GAGCCATTCT ATAAGGGGGT 5591 |||||||||| |||| ||||| |||||||||| |||||| ||| |||||||||| |||||||||| AACTCTTGAA GTTGGGCCTT TAACTCTCTT AACTCTACGG GAGCCATTCT ATAAGGGGGT 144 ATAGAAATGG GGCGAGTACT CGGTTCAAGA TCGATGCAAA AGTCAATATC CCTATCCGGT 5531 |||||||||| |||| || | |||||||||| ||||| || | |||||||||| |||||| ||| ATAGAAATGG GGCGTGTGCC CGGTTCAAGA TCGATACAGA AGTCAATATC CCTATCTGGT 204 GGCATACCAG GAAGGTCTGC GGGAAAAACA TCTAGAAACT CACGGACTAT CGAAACCGAC 5471 |||||||||| |||| ||||| || || ||| || | ||||| ||| |||||| |||||||| GGCATACCAG GAAGATCTGC AGGGAACACA TCCAAAAACT CACAGACTAT AAAAACCGAC 264 TCAATTGAAG GTACTTGGGT AATATCATCC CTGAGGTGTG CCAAGAAAGC TAAACAACCC 5411 ||||| |||| |||||||||| | | |||||| |||| |||| |||||||||| |||||| || TCAATCGAAG GTACTTGGGT AGTGTCATCC TTGAGATGTG CCAAGAAAGC TAAACACCCT 324 TTACTAACCA TTCTCTTAGC ACGAAGAAAG GAGACAATAC GAACCGGGTT GGAAGTGTAG 5351 |||||||||| || ||||||| |||||||||| |||| || | ||||| || |||||||||| TTACTAACCA TTTTCTTAGC ACGAAGAAAG GAGATGATGC ACACCGGATT GGAAGTGTAG 384 TCACCCTCCC ACACTAACGG ATCTGTCCCA GGCTTGGCTA ACGTCACAGT TTTAGCATTA 5291 |||||||||| |||||||||| |||||||||| |||||||||| | ||||| || |||||||||| TCACCCTCCC ACACTAACGG ATCTGTCCCA GGCTTGGCTA ATGTCACCGT TTTAGCATTA 444 CAATCCAAGA TTGCAAAATT TGGAGAAAGC CAAGTCATAC CCAGAATTAC ATCGAAGTCA 5231 |||||||||| | ||||| | ||||||||| |||||||||| |||||||||| ||| || ||| CAATCCAAGA TCGCAAATTG CGGAGAAAGC CAAGTCATAC CCAGAATTAC ATCAAAATCA 504 ACCATTTCTA AGATAACCAA GTCTACATGA GTATTGCTCC CCACAAAAGT CACCAGACAA 5171 |||||||||| |||||||||| ||||||| | || ||||||| ||||||| | ||||| |||| ACCATTTCTA AGATAACCAA ATCTACATAA GTGTTGCTCC CCACAAAGTT CACCAAACAA 564 GACCTATACA CCTTTTCAAC TATCACAGAC TCACCCACCG GAGTAGAAAC ACGAATAGGC 5111 |||||||| | |||||||||| || ||||||| |||||||||| |||||||||| |||||||||| GACCTATATA CCTTTTCAAC TACCACAGAC TCACCCACCG GAGTAGAAAC ACGAATAGGC 624 ATGTCAAGCA ATTCACAATG TAATTTAAGA CCATTAG 5074 || ||||| | |||||||||| ||| || ||| || |||| ATATCAAGTA ATTCACAATG TAAATTTAGA CCGTTAG 661 hqPGS_C06HBa0024L21.1-1-_SGN-E351414+ (5650 5074) ******************************************************************************** EST sequence 27 +strand 560 n (File: SGN-E242765+) 1 TGGTTCTAGC ATTAGGACAT CATAGCTCAT TTGATTATTT CTCATCTCAT AATTAGTATT 61 TAGTATTCCC TCAATTTAAT AATTTCATTA AAGTGTTCAT AGAGACTTAT CTCTTCATTA 121 GCTTTACACT ATAAAAGGTG AGTAAGTGTT GGTAATATTT ACTTAGGCTT ATTTGCTATT 181 GAAACCGACT CAATCGAAGG TACTTGGGTA GTGTCATCAT TGAGATGTGC TAAGAAAGAT 241 AAACACCTTT TACTAATCAT TTTCTTAGCA AGAAGAAAGG AGACGATGCG GACCGGATTG 301 GAAGTGTAGT CACCCTCTCA CACTAACGGG TCTATCCCAG GCTTGGCTAA CGTCACCGTT 361 TTAGCATTAC AATCCAAGAT TGCAAATTGC GGAGAAAGCA AAGTCATACC CAGAATCACA 421 TCAAAATCAT CCATTGCCAA GATAACCAAA TCTACATAAG TGTTGCTCCC CACAAAGTTT 481 ACGACACAAG ACCTATATAC TTTTTCAACT ACCTCAGACT CACCCACCGG AGTAGAAACA 541 CGAATAGGCA TATCAAGAAA Predicted gene structure (within gDNA segment 5996 to 4409): Exon 1 5483 5100 ( 384 n); cDNA 177 560 ( 384 n); score: 0.878 MATCH C06HBa0024L21.1-1- SGN-E242765+ 0.878 384 0.686 C PGS_C06HBa0024L21.1-1-_SGN-E242765+ (5483 5100) Alignment (genomic DNA sequence = upper lines): TATCGAAACC GACTCAATTG AAGGTACTTG GGTAATATCA TCCCTGAGGT GTGCCAAGAA 5424 ||| |||||| |||||||| | |||||||||| |||| | ||| || |||| | |||| ||||| TATTGAAACC GACTCAATCG AAGGTACTTG GGTAGTGTCA TCATTGAGAT GTGCTAAGAA 236 AGCTAAACAA CCCTTACTAA CCATTCTCTT AGCACGAAGA AAGGAGACAA TACGAACCGG 5364 || |||||| | ||||||| |||| |||| |||| ||||| |||||||| | | || ||||| AGATAAACAC CTTTTACTAA TCATTTTCTT AGCAAGAAGA AAGGAGACGA TGCGGACCGG 296 GTTGGAAGTG TAGTCACCCT CCCACACTAA CGGATCTGTC CCAGGCTTGG CTAACGTCAC 5304 ||||||||| |||||||||| | |||||||| ||| ||| || |||||||||| |||||||||| ATTGGAAGTG TAGTCACCCT CTCACACTAA CGGGTCTATC CCAGGCTTGG CTAACGTCAC 356 AGTTTTAGCA TTACAATCCA AGATTGCAAA ATTTGGAGAA AGCCAAGTCA TACCCAGAAT 5244 ||||||||| |||||||||| |||||||||| | |||||| ||| |||||| |||||||||| CGTTTTAGCA TTACAATCCA AGATTGCAAA TTGCGGAGAA AGCAAAGTCA TACCCAGAAT 416 TACATCGAAG TCAACCATTT CTAAGATAAC CAAGTCTACA TGAGTATTGC TCCCCACAAA 5184 ||||| || ||| ||||| | |||||||| ||| |||||| | ||| |||| |||||||||| CACATCAAAA TCATCCATTG CCAAGATAAC CAAATCTACA TAAGTGTTGC TCCCCACAAA 476 AGTCACCAGA CAAGACCTAT ACACCTTTTC AACTATCACA GACTCACCCA CCGGAGTAGA 5124 | || | | |||||||||| | || ||||| ||||| | || |||||||||| |||||||||| GTTTACGACA CAAGACCTAT ATACTTTTTC AACTACCTCA GACTCACCCA CCGGAGTAGA 536 AACACGAATA GGCATGTCAA GCAA 5100 |||||||||| ||||| |||| | || AACACGAATA GGCATATCAA GAAA 560 hqPGS_C06HBa0024L21.1-1-_SGN-E242765+ (5483 5100) ******************************************************************************** EST sequence 40 +strand 658 n (File: SGN-E355232+) 1 TCAATGCGAG GAAGAGGATA CTTGTTCTTA ATAGTTACCT TGTTCAGTTG TCTGTAGTCT 61 ATGCACATTC TAAAACTTCC ATCCTTCTTC TTCACAAATA AAACTGGAGC ACCCCAAGGA 121 GATGCACTTG GTCTAATGAA GACCTTGCTC AACAACTCTT GAAGTTGAGC CTTTAACTCT 181 CTTAATTCGG CGGGAGCCAT TCTATAAGGG GGTATAGAAA TGGGGCGTGT GCCTGGTTCA 241 AGATCGATAC AGAAGTCAAT ATCCCTATCT GGTGGCATAC CAGGAAGATC TGCAGGAAAC 301 ACGTCCAAAA ACTCGCGGAC TACCGAAACC GACTCAATTG AGGGTACTTG AGTAGTGTCA 361 TCCTTGAGAT GTGCCAAGAA AGCTGAACAC CCTTTACTAA CCATTTTCTT AGCACGAAGA 421 AAGGATATGA TACGCACCAG ATTGGAAGTG TAGTCACCCT CCCACACTAA CGGATCTGTC 481 CCAGGCTTGG CTAACGTCAC CGTTTTAGCA TTACAATCCA AGATCGCAAA ATTTGGAGAA 541 AGCCAAGTCA TACCCAGAAT TACATCAATG TCACCCATTT CTAAAAAACC AAATCTACAT 601 AAGTGTTGCT CCCCACGAAA TTCNACAAAA CAGAACTATG TACCTTTTCA ACTACCAC Predicted gene structure (within gDNA segment 5996 to 3708): Exon 1 5650 5145 ( 506 n); cDNA 154 658 ( 505 n); score: 0.893 MATCH C06HBa0024L21.1-1- SGN-E355232+ 0.893 506 0.769 C PGS_C06HBa0024L21.1-1-_SGN-E355232+ (5650 5145) Alignment (genomic DNA sequence = upper lines): AACTCTTGAA GTTGAGCCTT TAACTCTCTT AACTCTGCGG GAGCCATTCT ATAAGGGGGT 5591 |||||||||| |||||||||| |||||||||| || || |||| |||||||||| |||||||||| AACTCTTGAA GTTGAGCCTT TAACTCTCTT AATTCGGCGG GAGCCATTCT ATAAGGGGGT 213 ATAGAAATGG GGCGAGTACT CGGTTCAAGA TCGATGCAAA AGTCAATATC CCTATCCGGT 5531 |||||||||| |||| || | ||||||||| ||||| || | |||||||||| |||||| ||| ATAGAAATGG GGCGTGTGCC TGGTTCAAGA TCGATACAGA AGTCAATATC CCTATCTGGT 273 GGCATACCAG GAAGGTCTGC GGGAAAAACA TCTAGAAACT CACGGACTAT CGAAACCGAC 5471 |||||||||| |||| ||||| ||||| || || | ||||| | ||||||| |||||||||| GGCATACCAG GAAGATCTGC AGGAAACACG TCCAAAAACT CGCGGACTAC CGAAACCGAC 333 TCAATTGAAG GTACTTGGGT AATATCATCC CTGAGGTGTG CCAAGAAAGC TAAACAACCC 5411 |||||||| | ||||||| || | | |||||| |||| |||| |||||||||| | |||| || TCAATTGAGG GTACTTGAGT AGTGTCATCC TTGAGATGTG CCAAGAAAGC TGAACACCCT 393 TTACTAACCA TTCTCTTAGC ACGAAGAAAG GAGACAATAC GAACCGGGTT GGAAGTGTAG 5351 |||||||||| || ||||||| |||||||||| || | |||| | ||| | || |||||||||| TTACTAACCA TTTTCTTAGC ACGAAGAAAG GATATGATAC GCACCAGATT GGAAGTGTAG 453 TCACCCTCCC ACACTAACGG ATCTGTCCCA GGCTTGGCTA ACGTCACAGT TTTAGCATTA 5291 |||||||||| |||||||||| |||||||||| |||||||||| ||||||| || |||||||||| TCACCCTCCC ACACTAACGG ATCTGTCCCA GGCTTGGCTA ACGTCACCGT TTTAGCATTA 513 CAATCCAAGA TTGCAAAATT TGGAGAAAGC CAAGTCATAC CCAGAATTAC ATCGAAGTCA 5231 |||||||||| | |||||||| |||||||||| |||||||||| |||||||||| ||| | |||| CAATCCAAGA TCGCAAAATT TGGAGAAAGC CAAGTCATAC CCAGAATTAC ATCAATGTCA 573 ACCATTTCTA AGATAACCAA GTCTACATGA GTATTGCTCC CCACAAAAGT CACCAGACAA 5171 ||||||||| | | |||||| ||||||| | || ||||||| |||| ||| | | || | | CCCATTTCTA A-AAAACCAA ATCTACATAA GTGTTGCTCC CCACGAAATT CNACAAAACA 632 GACCTATACA CCTTTTCAAC TATCAC 5145 || |||| | |||||||||| || ||| GAACTATGTA CCTTTTCAAC TACCAC 658 hqPGS_C06HBa0024L21.1-1-_SGN-E355232+ (5650 5145) ******************************************************************************** EST sequence 44 +strand 679 n (File: SGN-E368762+) 1 GTCTCACCCA ATTCTTCACT GTCTCAATCT TACAAGGATC CACCATCACT CCATCCTTAG 61 AAACCACGTG CCCCAAGAAG GACACTGCAT CTATCCAAAA CTCACACTTA GAGAACTTGG 121 CATAAAGCTT TTTCTCCCTC AACATTTCTA ATACAATTCT CAAATGCTCC TCATGTTCCT 181 TCTTACTATT AGAGTATATC AGTATATCAT CAATAAACAT GATGACAAAG AGATCCAAAT 241 ATGGCTTAAA ATCCCGTTCA TCAAGCTCAT GAACGCAGCA GGGGCATTCG TAAGACCAAA 301 AGACATCACT ACAAATTCGT AATGCCCATA CCTGGTTCTA AAAGCAGTCT TTGGCACATC 361 CGTTGCCCGT ATTTTCAATT GATGATAACC GGATCTCAAG TCAATCTTAG AGAAGACACA 421 AGCACCTTGT AACTGATCGA ACAAGTCATC AATGCGAGGA AGTGGATACT TGTTCTTAAT 481 AGTTACCTTG TTCAACTGCC GGTAGTCTAT GCACATCCGA AAACTCCCAT CCTTCTTCTT 541 CACAAACCAA ACCGGAGCAC CCCAAGGAGA TGCACTTGGT CTAATGAAGA CTTTGCTCAA 601 AAACTCTTGA AGTTGGGCCT TTAACTCTCT TAACTCCGCG GGAGCCATTC TATAAGGGGG 661 TATAGAAATG GGGCGAGTG Predicted gene structure (within gDNA segment 5996 to 4954): Exon 1 5639 5574 ( 66 n); cDNA 613 678 ( 66 n); score: 0.970 MATCH C06HBa0024L21.1-1- SGN-E368762+ 0.970 66 0.097 C PGS_C06HBa0024L21.1-1-_SGN-E368762+ (5639 5574) Alignment (genomic DNA sequence = upper lines): TTGAGCCTTT AACTCTCTTA ACTCTGCGGG AGCCATTCTA TAAGGGGGTA TAGAAATGGG 5580 ||| |||||| |||||||||| |||| ||||| |||||||||| |||||||||| |||||||||| TTGGGCCTTT AACTCTCTTA ACTCCGCGGG AGCCATTCTA TAAGGGGGTA TAGAAATGGG 672 GCGAGT 5574 |||||| GCGAGT 678 hqPGS_C06HBa0024L21.1-1-_SGN-E368762+ (5639 5574) Total number of EST alignments reported: 51 ________________________________________________________________________________ Predicted gene locations (2) in segment 1 to 5996: PGL 1 (+ strand): 1409 3606 AGS-1 (1409 2280,2315 2391,2465 3606) SCR (e 0.808 d 0.000 a 0.000,e 0.591 d 0.000 a 0.000,e 0.819) Exon 1 1409 2280 ( 872 n); score: 0.808 Intron 1 2281 2314 ( 34 n); Pd: 0.000 Pa: 0.000 Exon 2 2315 2391 ( 77 n); score: 0.591 Intron 2 2392 2464 ( 73 n); Pd: 0.000 Pa: 0.000 Exon 3 2465 3606 (1142 n); score: 0.819 PGS (1409 1693) SGN-E252199+ PGS (1409 1574) SGN-E354383+ PGS (1410 1537) SGN-E356257- PGS (1410 1524) SGN-E275667+ PGS (1455 2107) SGN-E349296+ PGS (1466 1855) SGN-E242274+ PGS (1728 2280,2315 2391,2465 2539) SGN-E546548+ PGS (1917 2286) SGN-E578076+ PGS (2012 2291) SGN-E347579+ PGS (2452 3137) SGN-E546506- PGS (2665 2897) SGN-E209683+ PGS (2823 3547) SGN-E351546+ PGS (2823 3474) SGN-E356696+ PGS (2823 3403) SGN-E356206+ PGS (2901 3308) SGN-E370357- PGS (2901 3160) SGN-E336814+ PGS (2903 3547) SGN-E392027- PGS (2906 3160) SGN-E373117+ PGS (2906 3160) SGN-E373116- PGS (2952 3160) SGN-E298638+ PGS (2981 3143) SGN-E238551+ PGS (2981 3133) SGN-E352844+ PGS (2981 3133) SGN-E368629+ PGS (3326 3606) SGN-E355114+ 3-phase translation of AGS-1 (+strand): . . . . . . 1409 TTGTAACGACCTGTTTAGTCGTTTTGAGCAGCAGATTTTATTTCTGGAAAAACTGGCTGA L - R P V - S F - A A D F I S G K T G - C N D L F S R F E Q Q I L F L E K L A E V T T C L V V L S S R F Y F W K N W L . . . . . . 1469 GACGACGGATCCCACGACGGACCGTCATGGGCACGACGGACCGTCGAGGGGGTCTCATTC D D G S H D G P S W A R R T V E G V S F T T D P T T D R H G H D G P S R G S H S R R R I P R R T V M G T T D R R G G L I . . . . . . 1529 TAAAACACTTAGAATTCTGAAATTTGGGTACTGAAATCGACTCTCTGAACTTCGTGACGA - N T - N S E I W V L K S T L - T S - R K T L R I L K F G Y - N R L S E L R D E L K H L E F - N L G T E I D S L N F V T . . . . . . 1589 AGTGGCAGGACGGACCGTCACAGGCATGACGGGCCGTCACAGACCCTTGGTAAAAAATCT S G R T D R H R H D G P S Q T L G K K S V A G R T V T G M T G R H R P L V K N L K W Q D G P S Q A - R A V T D P W - K I . . . . . . 1649 AGTCTCTGAACTCTGAGACGGAAGCAGCAGGACGGACCGTCGCAGGCACGACGGCCCGTC S L - T L R R K Q Q D G P S Q A R R P V V S E L - D G S S R T D R R R H D G P S - S L N S E T E A A G R T V A G T T A R . . . . . . 1709 ACAGGCTGCGTAATCCCAGGCTGAGTCGGATTTCTTTAAGTGTTTTAAGGGACGTTTTGG T G C V I P G - V G F L - V F - G T F W Q A A - S Q A E S D F F K C F K G R F G H R L R N P R L S R I S L S V L R D V L . . . . . . 1769 ACTATTCCTGCTATAATTATAAATTTAGTGGGTTAATGTTAATAATTTAACTACTTGAGG T I P A I I I N L V G - C - - F N Y L R L F L L - L - I - W V N V N N L T T - G D Y S C Y N Y K F S G L M L I I - L L E . . . . . . 1829 GTTAAAGGACATAACCTTAAATTAATTAGTGGGTTACTTTTGTCATCTTTTATACTTAAT V K G H N L K L I S G L L L S S F I L N L K D I T L N - L V G Y F C H L L Y L I G - R T - P - I N - W V T F V I F Y T - . . . . . . 1889 TATATGCTAATTAGGGTAAAAGAAAAAGGGTTTGAATAAGAAAGATAGAAAGAATAGAGA Y M L I R V K E K G F E - E R - K E - R I C - L G - K K K G L N K K D R K N R E L Y A N - G K R K R V - I R K I E R I E . . . . . . 1949 GAAGAGGGAGAAACGATCGAGAGAGAGAGGAACGAAGAAGAAAGCGAGGATTTTGAGGAT E E G E T I E R E R N E E E S E D F E D K R E K R S R E R G T K K K A R I L R I R R G R N D R E R E E R R R K R G F - G . . . . . . 2009 TAGCTTGCTTGATCACAATTCTTCGGTGGAGGTAGGTTATGGTTTTTATGCTATTCGTAG - L A - S Q F F G G G R L W F L C Y S - S L L D H N S S V E V G Y G F Y A I R S L A C L I T I L R W R - V M V F M L F V . . . . . . 2069 TAAACTCTTAATAGCGAATGATATGTATTGGGTAGTGTTGTAAACCCTTCTATATGCTTA - T L N S E - Y V L G S V V N P S I C L K L L I A N D M Y W V V L - T L L Y A - V N S - - R M I C I G - C C K P F Y M L . . . . . . 2129 ATTGTATGCTTGCATGAATGTGATTATATGATTGTGATAAAGTAAGCATGATGAAGCTAT I V C L H E C D Y M I V I K - A - - S Y L Y A C M N V I I - L - - S K H D E A I N C M L A - M - L Y D C D K V S M M K L . . . . . . 2189 TGAATCCTAAATCTTGAAAAACCCTAATCTACTTTGTTAATGATGATGTCTTGGTATAAA - I L N L E K P - S T L L M M M S W Y K E S - I L K N P N L L C - - - C L G I K L N P K S - K T L I Y F V N D D V L V - . . . . : . . 2249 AGAAGGCTTGATGAACGAAAGTAGTGAGATTA : TATATGAGGATCGGAGTGTCACGTTCCG R R L D E R K - - D Y : I - G S E C H V P E G L M N E S S E I : I Y E D R S V T F R K K A - - T K V V R L : Y M R I G V S R S . . . . . : . 2343 ACACCAGGATAGTATAGGGGATCGGGTGCCACGTTCCGATACCAGGATA : GATAGTATATG T P G - Y R G S G A T F R Y Q D : R - Y M H Q D S I G D R V P R S D T R I : D S I - D T R I V - G I G C H V P I P G - : I V Y . . . . . . 2476 AGGATCGGAGTGTCACGTTTCGACACCAGGATAGAATATGGATCGGGTGCCACGTTCCGG R I G V S R F D T R I E Y G S G A T F R G S E C H V S T P G - N M D R V P R S G E D R S V T F R H Q D R I W I G C H V P . . . . . . 2536 TACCAGAATAGTATATGAGGATCGGAGTGTCACGTTCCGATACCAGGATAGAATATGGAT Y Q N S I - G S E C H V P I P G - N M D T R I V Y E D R S V T F R Y Q D R I W I V P E - Y M R I G V S R S D T R I E Y G . . . . . . 2596 CGGGTGTCACATTTCGGCACCAGGATTAGTAAAGAGAATGAATCTTGAAATATGTTAATA R V S H F G T R I S K E N E S - N M L I G C H I S A P G L V K R M N L E I C - Y S G V T F R H Q D - - R E - I L K Y V N . . . . . . 2656 TACTCAATTTAATGAACCTAATTCCCAAATGAGTATGATGGAGAGGCGTGAGTCCTCATT Y S I - - T - F P N E Y D G E A - V L I T Q F N E P N S Q M S M M E R R E S S L I L N L M N L I P K - V - W R G V S P H . . . . . . 2716 GATGTGCTTGGTGTTGTGACCAAGGGTTATGGTAATTGTAAATGCCGCATGTTGAGTTGT D V L G V V T K G Y G N C K C R M L S C M C L V L - P R V M V I V N A A C - V V - C A W C C D Q G L W - L - M P H V E L . . . . . . 2776 AGTTGATTTTATAATATTATCTGATATATGTTGTTTTCTATTTTGAGTTGGCCGATGATA S - F Y N I I - Y M L F S I L S W P M I V D F I I L S D I C C F L F - V G R - Y - L I L - Y Y L I Y V V F Y F E L A D D . . . . . . 2836 TCTACTCAGTACTTGTGTTTGTACTGACCCCTACTTGTATGTTTCTTTCTTTGTTAATTG S T Q Y L C L Y - P L L V C F F L C - L L L S T C V C T D P Y L Y V S F F V N C I Y S V L V F V L T P T C M F L S L L I . . . . . . 2896 TGGAGTACAGCAAACGCACCGTCGTCTTCAACTCAACCGCAACTCTAGCCAGACTCCATT W S T A N A P S S S T Q P Q L - P D S I G V Q Q T H R R L Q L N R N S S Q T P L V E Y S K R T V V F N S T A T L A R L H . . . . . . 2956 ACACCAGATTTCAGGGTGAGCTAACGCTTCTAGCTTGGACTGGATCTCCTTCTTCATGTC T P D F R V S - R F - L G L D L L L H V H Q I S G - A N A S S L D W I S F F M S Y T R F Q G E L T L L A W T G S P S S C . . . . . . 3016 TTGATGCCTTGAAGTTCCGGCATAGACTAGCTTTTTATTTATTCTAGCTTTCTAGATACT L M P - S S G I D - L F I Y S S F L D T - C L E V P A - T S F L F I L A F - I L L D A L K F R H R L A F Y L F - L S R Y . . . . . . 3076 CTTAGAATTAGTGATTTGAGGATAGATGTTCTTGTGATGATGACTTCCAGATTTTGGGGA L R I S D L R I D V L V M M T S R F W G L E L V I - G - M F L - - - L P D F G D S - N - - F E D R C S C D D D F Q I L G . . . . . . 3136 TAGTGATAACTTTTGAGTTTAAGAAGTTATTTATTTTTTATATTATTGAGTTTTAAGTCT - - - L L S L R S Y L F F I L L S F K S S D N F - V - E V I Y F L Y Y - V L S L I V I T F E F K K L F I F Y I I E F - V . . . . . . 3196 TCCGCATTTTATTTTGTTTCTTATGTTTGAAATGTTGGGGTTTAGATGGGTTGGTTCGCT S A F Y F V S Y V - N V G V - M G W F A P H F I L F L M F E M L G F R W V G S L F R I L F C F L C L K C W G L D G L V R . . . . . . 3256 CACATAGTAGGATAAGTGTGGGTGCCACTCGCGGCTCGTTTTGGGTCGTGACAAACTTGG H I V G - V W V P L A A R F G S - Q T W T - - D K C G C H S R L V L G R D K L G S H S R I S V G A T R G S F W V V T N L . . . . . . 3316 TATCAAAGCATTAGGTTCGTTGGTCTCATCACACAAGAACGAGTCTAGTAGAGTCTTAAG Y Q S I R F V G L I T Q E R V - - S L K I K A L G S L V S S H K N E S S R V L R V S K H - V R W S H H T R T S L V E S - . . . . . . 3376 GAACGGTAGGGGGACGCCTTTACTTTTCTTTGAGAGGCTATAAGACTTTAGGAAAATTCC E R - G D A F T F L - E A I R L - E N S N G R G T P L L F F E R L - D F R K I P G T V G G R L Y F S L R G Y K T L G K F . . . . . . 3436 ATTCTTTCTTTTTTTCGTGCTATTACTTGGGTCCAATTGGTATCTAGGTGATACAAATTG I L S F F R A I T W V Q L V S R - Y K L F F L F F V L L L G S N W Y L G D T N W H S F F F S C Y Y L G P I G I - V I Q I . . . . . . 3496 GTATCTGACCATCTTCGCTCTACTTCGTAGATGGTTCGAACTAGAGCAACGAATGCGCCA V S D H L R S T S - M V R T R A T N A P Y L T I F A L L R R W F E L E Q R M R Q G I - P S S L Y F V D G S N - S N E C A . . . . . . 3556 ACACTAAACACCGGCAAGACAAGAAGCGTCTGAGCCAGCCACTGGGGCTGT T L N T G K T R S V - A S H W G C H - T P A R Q E A S E P A T G A N T K H R Q D K K R L S Q P L G L Maximal non-overlapping open reading frames (>= 64 codons): >C06HBa0024L21.1-1+_PGL-1_AGS-1_PPS_1 (2790 3062) (frame '0'; 270 bp, 90 residues) 1 YYLIYVVFYF ELADDIYSVL VFVLTPTCMF LSLLIVEYSK RTVVFNSTAT LARLHYTRFQ 61 GELTLLAWTG SPSSCLDALK FRHRLAFYLF - >C06HBa0024L21.1-1+_PGL-1_AGS-1_PPS_2 (1908 2111) (frame '2'; 201 bp, 67 residues) 1 KKKGLNKKDR KNREKREKRS RERGTKKKAR ILRISLLDHN SSVEVGYGFY AIRSKLLIAN 61 DMYWVVL- AGS-2 (2211 2444,2485 2587,2625 2804) SCR (e 0.932 d 0.000 a 0.000,e 0.840 d 0.000 a 0.000,e 0.811) Exon 1 2211 2444 ( 234 n); score: 0.932 Intron 1 2445 2484 ( 40 n); Pd: 0.000 Pa: 0.000 Exon 2 2485 2587 ( 103 n); score: 0.840 Intron 2 2588 2624 ( 37 n); Pd: 0.000 Pa: 0.000 Exon 3 2625 2804 ( 180 n); score: 0.811 PGS (2211 2444,2485 2587,2625 2804) SGN-E242359+ 3-phase translation of AGS-2 (+strand): . . . . . . 2211 CCTAATCTACTTTGTTAATGATGATGTCTTGGTATAAAAGAAGGCTTGATGAACGAAAGT P N L L C - - - C L G I K E G L M N E S L I Y F V N D D V L V - K K A - - T K V - S T L L M M M S W Y K R R L D E R K . . . . . . 2271 AGTGAGATTAGGGGATCGGGTGCCACGTTCCGGTACCAGGATAGTATATGAGGATCGGAG S E I R G S G A T F R Y Q D S I - G S E V R L G D R V P R S G T R I V Y E D R S - - D - G I G C H V P V P G - Y M R I G . . . . . . 2331 TGTCACGTTCCGACACCAGGATAGTATAGGGGATCGGGTGCCACGTTCCGATACCAGGAT C H V P T P G - Y R G S G A T F R Y Q D V T F R H Q D S I G D R V P R S D T R I V S R S D T R I V - G I G C H V P I P G . . . . . . : 2391 AGTATATGAGGATCGGAGTGTCACGTTCCGACACCAGGATAGTATATGGATCGG : GTGTCA S I - G S E C H V P T P G - Y M D R : V S V Y E D R S V T F R H Q D S I W I G : C H - Y M R I G V S R S D T R I V Y G S : G V . . . . . . 2491 CGTTTCGACACCAGGATAGAATATGGATCGGGTGCCACGTTCCGGTACCAGAATAGTATA R F D T R I E Y G S G A T F R Y Q N S I V S T P G - N M D R V P R S G T R I V Y T F R H Q D R I W I G C H V P V P E - Y . . . . : . . 2551 TGAGGATCGGAGTGTCACGTTCCGATACCAGGATAGA : TAAAGAGAATGAATCTTGAAATA - G S E C H V P I P G - : I K R M N L E I E D R S V T F R Y Q D R : - R E - I L K Y M R I G V S R S D T R I D : K E N E S - N . . . . . . 2648 TGTTAATATACTCAATTTAATGAACCTAATTCCCAAATGAGTATGATGGAGAGGCGTGAG C - Y T Q F N E P N S Q M S M M E R R E V N I L N L M N L I P K - V - W R G V S M L I Y S I - - T - F P N E Y D G E A - . . . . . . 2708 TCCTCATTGATGTGCTTGGTGTTGTGACCAAGGGTTATGGTAATTGTAAATGCCGCATGT S S L M C L V L - P R V M V I V N A A C P H - C A W C C D Q G L W - L - M P H V V L I D V L G V V T K G Y G N C K C R M . . . . 2768 TGAGTTGTAGTTGATTTTATAATATTATCTGATATAT - V V V D F I I L S D I E L - L I L - Y Y L I Y L S C S - F Y N I I - Y Maximal non-overlapping open reading frames (>= 64 codons): >C06HBa0024L21.1-1+_PGL-1_AGS-2_PPS_1 (2263 2444,2485 2509) (frame '2'; 204 bp, 68 residues) 1 TKVVRLGDRV PRSGTRIVYE DRSVTFRHQD SIGDRVPRSD TRIVYEDRSV TFRHQDSIWI 61 GCHVSTPG- AGS-3 (2222 2509,2625 3038) SCR (e 0.760 d 0.000 a 0.000,e 0.842) Exon 1 2222 2509 ( 288 n); score: 0.760 Intron 1 2510 2624 ( 115 n); Pd: 0.000 Pa: 0.000 Exon 2 2625 3038 ( 414 n); score: 0.842 PGS (2222 2509,2625 3038) SGN-E241789- 3-phase translation of AGS-3 (+strand): . . . . . . 2222 TTGTTAATGATGATGTCTTGGTATAAAAGAAGGCTTGATGAACGAAAGTAGTGAGATTAG L L M M M S W Y K R R L D E R K - - D - C - - - C L G I K E G L M N E S S E I R V N D D V L V - K K A - - T K V V R L . . . . . . 2282 GGGATCGGGTGCCACGTTCCGGTACCAGGATAGTATATGAGGATCGGAGTGTCACGTTCC G I G C H V P V P G - Y M R I G V S R S G S G A T F R Y Q D S I - G S E C H V P G D R V P R S G T R I V Y E D R S V T F . . . . . . 2342 GACACCAGGATAGTATAGGGGATCGGGTGCCACGTTCCGATACCAGGATAGTATATGAGG D T R I V - G I G C H V P I P G - Y M R T P G - Y R G S G A T F R Y Q D S I - G R H Q D S I G D R V P R S D T R I V Y E . . . . . . 2402 ATCGGAGTGTCACGTTCCGACACCAGGATAGTATATGGATCGGGTGCCACGTTCCGGTAT I G V S R S D T R I V Y G S G A T F R Y S E C H V P T P G - Y M D R V P R S G I D R S V T F R H Q D S I W I G C H V P V . . . . . : . 2462 CAGGATAGTATATGAGGATCGGAGTGTCACGTTTCGACACCAGGATAG : TAAAGAGAATGA Q D S I - G S E C H V S T P G - : - R E - R I V Y E D R S V T F R H Q D S : K E N E S G - Y M R I G V S R F D T R I : V K R M . . . . . . 2637 ATCTTGAAATATGTTAATATACTCAATTTAATGAACCTAATTCCCAAATGAGTATGATGG I L K Y V N I L N L M N L I P K - V - W S - N M L I Y S I - - T - F P N E Y D G N L E I C - Y T Q F N E P N S Q M S M M . . . . . . 2697 AGAGGCGTGAGTCCTCATTGATGTGCTTGGTGTTGTGACCAAGGGTTATGGTAATTGTAA R G V S P H - C A W C C D Q G L W - L - E A - V L I D V L G V V T K G Y G N C K E R R E S S L M C L V L - P R V M V I V . . . . . . 2757 ATGCCGCATGTTGAGTTGTAGTTGATTTTATAATATTATCTGATATATGTTGTTTTCTAT M P H V E L - L I L - Y Y L I Y V V F Y C R M L S C S - F Y N I I - Y M L F S I N A A C - V V V D F I I L S D I C C F L . . . . . . 2817 TTTGAGTTGGCCGATGATATCTACTCAGTACTTGTGTTTGTACTGACCCCTACTTGTATG F E L A D D I Y S V L V F V L T P T C M L S W P M I S T Q Y L C L Y - P L L V C F - V G R - Y L L S T C V C T D P Y L Y . . . . . . 2877 TTTCTTTCTTTGTTAATTGTGGAGTACAGCAAACGCACCGTCGTCTTCAACTCAACCGCA F L S L L I V E Y S K R T V V F N S T A F F L C - L W S T A N A P S S S T Q P Q V S F F V N C G V Q Q T H R R L Q L N R . . . . . . 2937 ACTCTAGCCAGACTCCATTACACCAGATTTCAGGGTGAGCTAACGCTTCTAGCTTGGACT T L A R L H Y T R F Q G E L T L L A W T L - P D S I T P D F R V S - R F - L G L N S S Q T P L H Q I S G - A N A S S L D . . . . . 2997 GGATCTCCTTCTTCATGTCTTGATGCCTTGAAGTTCCGGCAT G S P S S C L D A L K F R H D L L L H V L M P - S S G W I S F F M S - C L E V P A Maximal non-overlapping open reading frames (>= 64 codons): >C06HBa0024L21.1-1+_PGL-1_AGS-3_PPS_1 (2790 3038) (frame '1'; 249 bp, 83 residues) 1 YYLIYVVFYF ELADDIYSVL VFVLTPTCMF LSLLIVEYSK RTVVFNSTAT LARLHYTRFQ 61 GELTLLAWTG SPSSCLDALK FRH >C06HBa0024L21.1-1+_PGL-1_AGS-3_PPS_2 (2263 2469) (frame '0'; 204 bp, 68 residues) 1 TKVVRLGDRV PRSGTRIVYE DRSVTFRHQD SIGDRVPRSD TRIVYEDRSV TFRHQDSIWI 61 GCHVPVSG- AGS-4 (2251 2431,2465 2841) SCR (e 0.796 d 0.000 a 0.000,e 0.739) Exon 1 2251 2431 ( 181 n); score: 0.796 Intron 1 2432 2464 ( 33 n); Pd: 0.000 Pa: 0.000 Exon 2 2465 2841 ( 377 n); score: 0.739 PGS (2251 2431,2465 2841) SGN-E349977+ 3-phase translation of AGS-4 (+strand): . . . . . . 2251 AAGGCTTGATGAACGAAAGTAGTGAGATTAGGGGATCGGGTGCCACGTTCCGGTACCAGG K A - - T K V V R L G D R V P R S G T R R L D E R K - - D - G I G C H V P V P G G L M N E S S E I R G S G A T F R Y Q . . . . . . 2311 ATAGTATATGAGGATCGGAGTGTCACGTTCCGACACCAGGATAGTATAGGGGATCGGGTG I V Y E D R S V T F R H Q D S I G D R V - Y M R I G V S R S D T R I V - G I G C D S I - G S E C H V P T P G - Y R G S G . . . . . . 2371 CCACGTTCCGATACCAGGATAGTATATGAGGATCGGAGTGTCACGTTCCGACACCAGGAT P R S D T R I V Y E D R S V T F R H Q D H V P I P G - Y M R I G V S R S D T R I A T F R Y Q D S I - G S E C H V P T P G . : . . . . . 2431 A : GATAGTATATGAGGATCGGAGTGTCACGTTTCGACACCAGGATAGAATATGGATCGGGT : R - Y M R I G V S R F D T R I E Y G S G : D S I - G S E C H V S T P G - N M D R V - : I V Y E D R S V T F R H Q D R I W I G . . . . . . 2524 GCCACGTTCCGGTACCAGAATAGTATATGAGGATCGGAGTGTCACGTTCCGATACCAGGA A T F R Y Q N S I - G S E C H V P I P G P R S G T R I V Y E D R S V T F R Y Q D C H V P V P E - Y M R I G V S R S D T R . . . . . . 2584 TAGAATATGGATCGGGTGTCACATTTCGGCACCAGGATTAGTAAAGAGAATGAATCTTGA - N M D R V S H F G T R I S K E N E S - R I W I G C H I S A P G L V K R M N L E I E Y G S G V T F R H Q D - - R E - I L . . . . . . 2644 AATATGTTAATATACTCAATTTAATGAACCTAATTCCCAAATGAGTATGATGGAGAGGCG N M L I Y S I - - T - F P N E Y D G E A I C - Y T Q F N E P N S Q M S M M E R R K Y V N I L N L M N L I P K - V - W R G . . . . . . 2704 TGAGTCCTCATTGATGTGCTTGGTGTTGTGACCAAGGGTTATGGTAATTGTAAATGCCGC - V L I D V L G V V T K G Y G N C K C R E S S L M C L V L - P R V M V I V N A A V S P H - C A W C C D Q G L W - L - M P . . . . . . 2764 ATGTTGAGTTGTAGTTGATTTTATAATATTATCTGATATATGTTGTTTTCTATTTTGAGT M L S C S - F Y N I I - Y M L F S I L S C - V V V D F I I L S D I C C F L F - V H V E L - L I L - Y Y L I Y V V F Y F E . . 2824 TGGCCGATGATATCTACT W P M I S T G R - Y L L A D D I Y Maximal non-overlapping open reading frames (>= 64 codons): none AGS-5 (2323 2353,2625 2996) SCR (e 0.790 d 0.000 a 0.000,e 0.780) Exon 1 2323 2353 ( 31 n); score: 0.790 Intron 1 2354 2624 ( 271 n); Pd: 0.000 Pa: 0.000 Exon 2 2625 2996 ( 372 n); score: 0.780 PGS (2323 2353,2625 2996) SGN-E246710+ 3-phase translation of AGS-5 (+strand): . . . . : . . 2323 GATCGGAGTGTCACGTTCCGACACCAGGATA : TAAAGAGAATGAATCTTGAAATATGTTAA D R S V T F R H Q D : I K R M N L E I C - I G V S R S D T R I : - R E - I L K Y V N S E C H V P T P G Y : K E N E S - N M L . . . . . . 2654 TATACTCAATTTAATGAACCTAATTCCCAAATGAGTATGATGGAGAGGCGTGAGTCCTCA Y T Q F N E P N S Q M S M M E R R E S S I L N L M N L I P K - V - W R G V S P H I Y S I - - T - F P N E Y D G E A - V L . . . . . . 2714 TTGATGTGCTTGGTGTTGTGACCAAGGGTTATGGTAATTGTAAATGCCGCATGTTGAGTT L M C L V L - P R V M V I V N A A C - V - C A W C C D Q G L W - L - M P H V E L I D V L G V V T K G Y G N C K C R M L S . . . . . . 2774 GTAGTTGATTTTATAATATTATCTGATATATGTTGTTTTCTATTTTGAGTTGGCCGATGA V V D F I I L S D I C C F L F - V G R - - L I L - Y Y L I Y V V F Y F E L A D D C S - F Y N I I - Y M L F S I L S W P M . . . . . . 2834 TATCTACTCAGTACTTGTGTTTGTACTGACCCCTACTTGTATGTTTCTTTCTTTGTTAAT Y L L S T C V C T D P Y L Y V S F F V N I Y S V L V F V L T P T C M F L S L L I I S T Q Y L C L Y - P L L V C F F L C - . . . . . . 2894 TGTGGAGTACAGCAAACGCACCGTCGTCTTCAACTCAACCGCAACTCTAGCCAGACTCCA C G V Q Q T H R R L Q L N R N S S Q T P V E Y S K R T V V F N S T A T L A R L H L W S T A N A P S S S T Q P Q L - P D S . . . . . 2954 TTACACCAGATTTCAGGGTGAGCTAACGCTTCTAGCTTGGACT L H Q I S G - A N A S S L D Y T R F Q G E L T L L A W T I T P D F R V S - R F - L G Maximal non-overlapping open reading frames (>= 64 codons): >C06HBa0024L21.1-1+_PGL-1_AGS-5_PPS_1 (2790 2996) (frame '2'; 207 bp, 69 residues) 1 YYLIYVVFYF ELADDIYSVL VFVLTPTCMF LSLLIVEYSK RTVVFNSTAT LARLHYTRFQ 61 GELTLLAWT PGL 2 (- strand): 5651 3618 AGS-1 (5650 3618) SCR (e 0.909) Exon 1 5650 3618 (2033 n); score: 0.909 PGS (4047 3618) SGN-E352180+ PGS (4235 3682) SGN-E329287- PGS (4405 3686) SGN-E356614+ PGS (4402 3739) SGN-E352401+ PGS (4600 3896) SGN-E349404+ PGS (4600 3928) SGN-E351625+ PGS (4600 3993) SGN-E357065+ PGS (4600 4085) SGN-E352365+ PGS (5040 4253) SGN-E356912+ PGS (4964 4269) SGN-E356209+ PGS (5120 4359) SGN-E214046+ PGS (5038 4507) SGN-E353805+ PGS (5124 4568) SGN-E244046+ PGS (5506 4965) SGN-E355026+ PGS (5650 4973) SGN-E355244+ PGS (5331 5001) SGN-E352716+ PGS (5639 5031) SGN-E352117- PGS (5650 5074) SGN-E351414+ PGS (5483 5100) SGN-E242765+ PGS (5650 5145) SGN-E355232+ PGS (5639 5574) SGN-E368762+ 3-phase translation of AGS-1 (-strand): . . . . . . 5650 AACTCTTGAAGTTGAGCCTTTAACTCTCTTAACTCTGCGGGAGCCATTCTATAAGGGGGT N S - S - A F N S L N S A G A I L - G G T L E V E P L T L L T L R E P F Y K G V L L K L S L - L S - L C G S H S I R G . . . . . . 5590 ATAGAAATGGGGCGAGTACTCGGTTCAAGATCGATGCAAAAGTCAATATCCCTATCCGGT I E M G R V L G S R S M Q K S I S L S G - K W G E Y S V Q D R C K S Q Y P Y P V Y R N G A S T R F K I D A K V N I P I R . . . . . . 5530 GGCATACCAGGAAGGTCTGCGGGAAAAACATCTAGAAACTCACGGACTATCGAAACCGAC G I P G R S A G K T S R N S R T I E T D A Y Q E G L R E K H L E T H G L S K P T W H T R K V C G K N I - K L T D Y R N R . . . . . . 5470 TCAATTGAAGGTACTTGGGTAATATCATCCCTGAGGTGTGCCAAGAAAGCTAAACAACCC S I E G T W V I S S L R C A K K A K Q P Q L K V L G - Y H P - G V P R K L N N P L N - R Y L G N I I P E V C Q E S - T T . . . . . . 5410 TTACTAACCATTCTCTTAGCACGAAGAAAGGAGACAATACGAACCGGGTTGGAAGTGTAG L L T I L L A R R K E T I R T G L E V - Y - P F S - H E E R R Q Y E P G W K C S L T N H S L S T K K G D N T N R V G S V . . . . . . 5350 TCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTA S P S H T N G S V P G L A N V T V L A L H P P T L T D L S Q A W L T S Q F - H Y V T L P H - R I C P R L G - R H S F S I . . . . . . 5290 CAATCCAAGATTGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCGAAGTCA Q S K I A K F G E S Q V I P R I T S K S N P R L Q N L E K A K S Y P E L H R S Q T I Q D C K I W R K P S H T Q N Y I E V . . . . . . 5230 ACCATTTCTAAGATAACCAAGTCTACATGAGTATTGCTCCCCACAAAAGTCACCAGACAA T I S K I T K S T - V L L P T K V T R Q P F L R - P S L H E Y C S P Q K S P D K N H F - D N Q V Y M S I A P H K S H Q T . . . . . . 5170 GACCTATACACCTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGC D L Y T F S T I T D S P T G V E T R I G T Y T P F Q L S Q T H P P E - K H E - A R P I H L F N Y H R L T H R S R N T N R . . . . . . 5110 ATGTCAAGCAATTCACAATGTAATTTAAGACCATTAGCAAATGAGGAAGATACATAAGAA M S S N S Q C N L R P L A N E E D T - E C Q A I H N V I - D H - Q M R K I H K K H V K Q F T M - F K T I S K - G R Y I R . . . . . . 5050 AATGTGGATCCAGGATCAAACAATACAGAAGCCACGCAATCACAAACCAAAAGATTACCT N V D P G S N N T E A T Q S Q T K R L P M W I Q D Q T I Q K P R N H K P K D Y L K C G S R I K Q Y R S H A I T N Q K I T . . . . . . 4990 GTGATAACAACATCAGATGTCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCC V I T T S D V S A S D R P G K A - Q W A - - Q H Q M S P L Q T A Q G K R N N G P C D N N I R C L R F R P P R E S V T M G . . . . . . 4930 CTATCACCTGTCTGTTCGTTGCCTCTACCAGGTTGCGCTGCAGTAGTTCCCATTTGTCCG L S P V C S L P L P G C A A V V P I C P Y H L S V R C L Y Q V A L Q - F P F V R P I T C L F V A S T R L R C S S S H L S . . . . . . 4870 TCACCCCGGCCGTTTTGGTGACCACCATTACCTCGGTCACCACGCCCTCCAGAATGACGG S P R P F W - P P L P R S P R P P E - R H P G R F G D H H Y L G H H A L Q N D G V T P A V L V T T I T S V T T P S R M T . . . . . . 4810 CCTCTTCCATGACCACCTCTACCTCTGACTATTTGAGGTCTGTAACTCTGTTTTGGACAA P L P - P P L P L T I - G L - L C F G Q L F H D H L Y L - L F E V C N S V L D N A S S M T T S T S D Y L R S V T L F W T . . . . . . 4750 TACCTCTTAATTTGTCCAGTCTCCCCACATCCATAACATTCTCTGGATTCAAGCATAGGT Y L L I C P V S P H P - H S L D S S I G T S - F V Q S P H I H N I L W I Q A - V I P L N L S S L P T S I T F S G F K H R . . . . . . 4690 CTCTCAGAGAAGTGTTGACCGGTCTGAGGTGGACCCAACTACAGTCTGTAGTGAAGACTG L S E K C - P V - G G P N Y S L - - R L S Q R S V D R S E V D P T T V C S E D - S L R E V L T G L R W T Q L Q S V V K T . . . . . . 4630 AATTGGTCGGACTGAGTAACCTCCTGAATCCTGTTCTCTAGAGTAAGAACCATTAAACTC N W S D - V T S - I L F S R V R T I K L I G R T E - P P E S C S L E - E P L N S E L V G L S N L L N P V L - S K N H - T . . . . . . 4570 ACCTCCCCTTCGAAACCTTTTTGATGTCGATGCCATGGTGAAGTCATCTGGCTTCACTCC T S P S K P F - C R C H G E V I W L H S P P L R N L F D V D A M V K S S G F T P H L P F E T F L M S M P W - S H L A S L . . . . . . 4510 TTCCACCTCTATCACGAAGTCTACCACTTCTTGAAAGGATTTTGCCGTAGCCGCTACCTG F H L Y H E V Y H F L K G F C R S R Y L S T S I T K S T T S - K D F A V A A T C L P P L S R S L P L L E R I L P - P L P . . . . . . 4450 TAAGGCTGAAATCCGCAATTCTGACCTCAATCCCTTCACAAAACGGCGAATCCGCTCTTG - G - N P Q F - P Q S L H K T A N P L L K A E I R N S D L N P F T K R R I R S C V R L K S A I L T S I P S Q N G E S A L . . . . . . 4390 TGGACTGAAACAAAGTTGGGTGGCATACCTGGATAATGCACGAAACTTAGCCTCATATGC W T E T K L G G I P G - C T K L S L I C G L K Q S W V A Y L D N A R N L A S Y A V D - N K V G W H T W I M H E T - P H M . . . . . . 4330 AGTAACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCTCTTTTCCTATCCCTCAA S N R H P T L L - A Q E L I S F P I P Q V T D I L P C S R L K N S S L F L S L K Q - P T S Y L A L G S R T H L F S Y P S . . . . . . 4270 AGTCCGGGGGATATACTTCTCCATAAACAAGCTAGAGAATGATGCCCAAGTCATAGGTGG S P G D I L L H K Q A R E - C P S H R W V R G I Y F S I N K L E N D A Q V I G G K S G G Y T S P - T S - R M M P K S - V . . . . . . 4210 TGCCTCTGTTGGTTGACACTCAACATGTGACCGCCACCACATTTTGGCGTTCCCTTGAAA C L C W L T L N M - P P P H F G V P L K A S V G - H S T C D R H H I L A F P - N V P L L V D T Q H V T A T T F W R S L E . . . . . . 4150 CTGATAAGTCACAAACTCAACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTC L I S H K L N T K P F Y Y T H L V - - L - - V T N S T P N R S T I P I L C S S S T D K S Q T Q H Q T V L L Y P S C V V A . . . . . . 4090 ATGACAGTCAACCAGAAAATCATAGGCATCCTCAGATTCAGCACCCTTGAAGACTGGAGG M T V N Q K I I G I L R F S T L E D W R - Q S T R K S - A S S D S A P L K T G G H D S Q P E N H R H P Q I Q H P - R L E . . . . . . 4030 TTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCTGT F Q F Q E L T E K F M L I I C H Y R P C F N F K N L L K S S C - S F V I I G P V V S I S R T Y - K V H A D H L S L - A L . . . . . . 3970 AGTCAGACGAGGAAACGTGCCTATTTCCAATGAGGCATCCATGCGGGGAGCCACAGTAGC S Q T R K R A Y F Q - G I H A G S H S S V R R G N V P I S N E A S M R G A T V A - S D E E T C L F P M R H P C G E P Q - . . . . . . 3910 TGCATGTTGTACCTCCGAAACCTGAGGTGCTGGTGCAGAAAACACTGGAGGTGTCTGGCC C M L Y L R N L R C W C R K H W R C L A A C C T S E T - G A G A E N T G G V W P L H V V P P K P E V L V Q K T L E V S G . . . . . . 3850 CTGATCAGATAACCCGTTAAGATAAGCAAGAACCTGATTGATCATCTCTGGGGTAGGTTG L I R - P V K I S K N L I D H L W G R L - S D N P L R - A R T - L I I S G V G W P D Q I T R - D K Q E P D - S S L G - V . . . . . . 3790 GGGTGGCAATCCCTCATTCTGTACTTGTTCATTCTCCCCTTCCTTACCCTCTCTTACCAC G W Q S L I L Y L F I L P F L T L S Y H G G N P S F C T C S F S P S L P S L T T G V A I P H S V L V H S P L P Y P L L P . . . . . . 3730 TTCCTCAGTCGGTGGAGGAGTCACCGCCCTAGTATCAGATGGGCTAGGTGCTTGTCCTCT F L S R W R S H R P S I R W A R C L S S S S V G G G V T A L V S D G L G A C P L L P Q S V E E S P P - Y Q M G - V L V L . . . . . . 3670 TCCTCTAGAGGACGTCCTCCCACGACCTCTTCCACGACCTCTTGCCACCACTC S S R G R P P T T S S T T S C H H P L E D V L P R P L P R P L A T T F L - R T S S H D L F H D L L P P L Maximal non-overlapping open reading frames (>= 64 codons): >C06HBa0024L21.1-1-_PGL-2_AGS-1_PPS_1 (5066 4590) (frame '0'; 474 bp, 158 residues) 1 GRYIRKCGSR IKQYRSHAIT NQKITCDNNI RCLRFRPPRE SVTMGPITCL FVASTRLRCS 61 SSHLSVTPAV LVTTITSVTT PSRMTASSMT TSTSDYLRSV TLFWTIPLNL SSLPTSITFS 121 GFKHRSLREV LTGLRWTQLQ SVVKTELVGL SNLLNPVL- >C06HBa0024L21.1-1-_PGL-2_AGS-1_PPS_2 (4476 4195) (frame '2'; 279 bp, 93 residues) 1 KDFAVAATCK AEIRNSDLNP FTKRRIRSCG LKQSWVAYLD NARNLASYAV TDILPCSRLK 61 NSSLFLSLKV RGIYFSINKL ENDAQVIGGA SVG- >C06HBa0024L21.1-1-_PGL-2_AGS-1_PPS_3 (5596 5351) (frame '1'; 243 bp, 81 residues) 1 GGIEMGRVLG SRSMQKSISL SGGIPGRSAG KTSRNSRTIE TDSIEGTWVI SSLRCAKKAK 61 QPLLTILLAR RKETIRTGLE V- >C06HBa0024L21.1-1-_PGL-2_AGS-1_PPS_4 (3838 3620) (frame '1'; 219 bp, 73 residues) 1 PVKISKNLID HLWGRLGWQS LILYLFILPF LTLSYHFLSR WRSHRPSIRW ARCLSSSSRG 61 RPPTTSSTTS CHH 3-phase translation of AGS-1 (+strand): . . . . . . 3618 GAGTGGTGGCAAGAGGTCGTGGAAGAGGTCGTGGGAGGACGTCCTCTAGAGGAAGAGGAC E W W Q E V V E E V V G G R P L E E E D S G G K R S W K R S W E D V L - R K R T V V A R G R G R G R G R T S S R G R G . . . . . . 3678 AAGCACCTAGCCCATCTGATACTAGGGCGGTGACTCCTCCACCGACTGAGGAAGTGGTAA K H L A H L I L G R - L L H R L R K W - S T - P I - Y - G G D S S T D - G S G K Q A P S P S D T R A V T P P P T E E V V . . . . . . 3738 GAGAGGGTAAGGAAGGGGAGAATGAACAAGTACAGAATGAGGGATTGCCACCCCAACCTA E R V R K G R M N K Y R M R D C H P N L R G - G R G E - T S T E - G I A T P T Y R E G K E G E N E Q V Q N E G L P P Q P . . . . . . 3798 CCCCAGAGATGATCAATCAGGTTCTTGCTTATCTTAACGGGTTATCTGATCAGGGCCAGA P Q R - S I R F L L I L T G Y L I R A R P R D D Q S G S C L S - R V I - S G P D T P E M I N Q V L A Y L N G L S D Q G Q . . . . . . 3858 CACCTCCAGTGTTTTCTGCACCAGCACCTCAGGTTTCGGAGGTACAACATGCAGCTACTG H L Q C F L H Q H L R F R R Y N M Q L L T S S V F C T S T S G F G G T T C S Y C T P P V F S A P A P Q V S E V Q H A A T . . . . . . 3918 TGGCTCCCCGCATGGATGCCTCATTGGAAATAGGCACGTTTCCTCGTCTGACTACAGGGC W L P A W M P H W K - A R F L V - L Q G G S P H G C L I G N R H V S S S D Y R A V A P R M D A S L E I G T F P R L T T G . . . . . . 3978 CTATAATGACAAATGATCAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAG L - - Q M I S M N F S V S S - N - N L Q Y N D K - S A - T F Q - V L E I E T S S P I M T N D Q H E L F S K F L K L K P P . . . . . . 4038 TCTTCAAGGGTGCTGAATCTGAGGATGCCTATGATTTTCTGGTTGACTGTCATGAGCTAC S S R V L N L R M P M I F W L T V M S Y L Q G C - I - G C L - F S G - L S - A T V F K G A E S E D A Y D F L V D C H E L . . . . . . 4098 TACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTTGTGACTTATCAGTTTCAAG Y T R W V - - N G L V L S L - L I S F K T Q D G Y S R T V W C - V C D L S V S R L H K M G I V E R F G V E F V T Y Q F Q . . . . . . 4158 GGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACCTA G T P K C G G G H M L S V N Q Q R H H L E R Q N V V A V T C - V S T N R G T T Y G N A K M W W R S H V E C Q P T E A P P . . . . . . 4218 TGACTTGGGCATCATTCTCTAGCTTGTTTATGGAGAAGTATATCCCCCGGACTTTGAGGG - L G H H S L A C L W R S I S P G L - G D L G I I L - L V Y G E V Y P P D F E G M T W A S F S S L F M E K Y I P R T L R . . . . . . 4278 ATAGGAAAAGAGATGAGTTCTTGAGCCTAGAGCAAGGTAGGATGTCGGTTACTGCATATG I G K E M S S - A - S K V G C R L L H M - E K R - V L E P R A R - D V G Y C I - D R K R D E F L S L E Q G R M S V T A Y . . . . . . 4338 AGGCTAAGTTTCGTGCATTATCCAGGTATGCCACCCAACTTTGTTTCAGTCCACAAGAGC R L S F V H Y P G M P P N F V S V H K S G - V S C I I Q V C H P T L F Q S T R A E A K F R A L S R Y A T Q L C F S P Q E . . . . . . 4398 GGATTCGCCGTTTTGTGAAGGGATTGAGGTCAGAATTGCGGATTTCAGCCTTACAGGTAG G F A V L - R D - G Q N C G F Q P Y R - D S P F C E G I E V R I A D F S L T G S R I R R F V K G L R S E L R I S A L Q V . . . . . . 4458 CGGCTACGGCAAAATCCTTTCAAGAAGTGGTAGACTTCGTGATAGAGGTGGAAGGAGTGA R L R Q N P F K K W - T S - - R W K E - G Y G K I L S R S G R L R D R G G R S E A A T A K S F Q E V V D F V I E V E G V . . . . . . 4518 AGCCAGATGACTTCACCATGGCATCGACATCAAAAAGGTTTCGAAGGGGAGGTGAGTTTA S Q M T S P W H R H Q K G F E G E V S L A R - L H H G I D I K K V S K G R - V - K P D D F T M A S T S K R F R R G G E F . . . . . . 4578 ATGGTTCTTACTCTAGAGAACAGGATTCAGGAGGTTACTCAGTCCGACCAATTCAGTCTT M V L T L E N R I Q E V T Q S D Q F S L W F L L - R T G F R R L L S P T N S V F N G S Y S R E Q D S G G Y S V R P I Q S . . . . . . 4638 CACTACAGACTGTAGTTGGGTCCACCTCAGACCGGTCAACACTTCTCTGAGAGACCTATG H Y R L - L G P P Q T G Q H F S E R P M T T D C S W V H L R P V N T S L R D L C S L Q T V V G S T S D R S T L L - E T Y . . . . . . 4698 CTTGAATCCAGAGAATGTTATGGATGTGGGGAGACTGGACAAATTAAGAGGTATTGTCCA L E S R E C Y G C G E T G Q I K R Y C P L N P E N V M D V G R L D K L R G I V Q A - I Q R M L W M W G D W T N - E V L S . . . . . . 4758 AAACAGAGTTACAGACCTCAAATAGTCAGAGGTAGAGGTGGTCATGGAAGAGGCCGTCAT K Q S Y R P Q I V R G R G G H G R G R H N R V T D L K - S E V E V V M E E A V I K T E L Q T S N S Q R - R W S W K R P S . . . . . . 4818 TCTGGAGGGCGTGGTGACCGAGGTAATGGTGGTCACCAAAACGGCCGGGGTGACGGACAA S G G R G D R G N G G H Q N G R G D G Q L E G V V T E V M V V T K T A G V T D K F W R A W - P R - W W S P K R P G - R T . . . . . . 4878 ATGGGAACTACTGCAGCGCAACCTGGTAGAGGCAACGAACAGACAGGTGATAGGGCCCAT M G T T A A Q P G R G N E Q T G D R A H W E L L Q R N L V E A T N R Q V I G P I N G N Y C S A T W - R Q R T D R - - G P . . . . . . 4938 TGTTACGCTTTCCCTGGGCGGTCTGAAGCGGAGACATCTGATGTTGTTATCACAGGTAAT C Y A F P G R S E A E T S D V V I T G N V T L S L G G L K R R H L M L L S Q V I L L R F P W A V - S G D I - C C Y H R - . . . . . . 4998 CTTTTGGTTTGTGATTGCGTGGCTTCTGTATTGTTTGATCCTGGATCCACATTTTCTTAT L L V C D C V A S V L F D P G S T F S Y F W F V I A W L L Y C L I L D P H F L M S F G L - L R G F C I V - S W I H I F L . . . . . . 5058 GTATCTTCCTCATTTGCTAATGGTCTTAAATTACATTGTGAATTGCTTGACATGCCTATT V S S S F A N G L K L H C E L L D M P I Y L P H L L M V L N Y I V N C L T C L F C I F L I C - W S - I T L - I A - H A Y . . . . . . 5118 CGTGTTTCTACTCCGGTGGGTGAGTCTGTGATAGTTGAAAAGGTGTATAGGTCTTGTCTG R V S T P V G E S V I V E K V Y R S C L V F L L R W V S L - - L K R C I G L V W S C F Y S G G - V C D S - K G V - V L S . . . . . . 5178 GTGACTTTTGTGGGGAGCAATACTCATGTAGACTTGGTTATCTTAGAAATGGTTGACTTC V T F V G S N T H V D L V I L E M V D F - L L W G A I L M - T W L S - K W L T S G D F C G E Q Y S C R L G Y L R N G - L . . . . . . 5238 GATGTAATTCTGGGTATGACTTGGCTTTCTCCAAATTTTGCAATCTTGGATTGTAATGCT D V I L G M T W L S P N F A I L D C N A M - F W V - L G F L Q I L Q S W I V M L R C N S G Y D L A F S K F C N L G L - C . . . . . . 5298 AAAACTGTGACGTTAGCCAAGCCTGGGACAGATCCGTTAGTGTGGGAGGGTGACTACACT K T V T L A K P G T D P L V W E G D Y T K L - R - P S L G Q I R - C G R V T T L - N C D V S Q A W D R S V S V G G - L H . . . . . . 5358 TCCAACCCGGTTCGTATTGTCTCCTTTCTTCGTGCTAAGAGAATGGTTAGTAAGGGTTGT S N P V R I V S F L R A K R M V S K G C P T R F V L S P F F V L R E W L V R V V F Q P G S Y C L L S S C - E N G - - G L . . . . . . 5418 TTAGCTTTCTTGGCACACCTCAGGGATGATATTACCCAAGTACCTTCAATTGAGTCGGTT L A F L A H L R D D I T Q V P S I E S V - L S W H T S G M I L P K Y L Q L S R F F S F L G T P Q G - Y Y P S T F N - V G . . . . . . 5478 TCGATAGTCCGTGAGTTTCTAGATGTTTTTCCCGCAGACCTTCCTGGTATGCCACCGGAT S I V R E F L D V F P A D L P G M P P D R - S V S F - M F F P Q T F L V C H R I F D S P - V S R C F S R R P S W Y A T G . . . . . . 5538 AGGGATATTGACTTTTGCATCGATCTTGAACCGAGTACTCGCCCCATTTCTATACCCCCT R D I D F C I D L E P S T R P I S I P P G I L T F A S I L N R V L A P F L Y P L - G Y - L L H R S - T E Y S P H F Y T P . . . . . . 5598 TATAGAATGGCTCCCGCAGAGTTAAGAGAGTTAAAGGCTCAACTTCAAGAGTT Y R M A P A E L R E L K A Q L Q E I E W L P Q S - E S - R L N F K S L - N G S R R V K R V K G S T S R V Maximal non-overlapping open reading frames (>= 64 codons): >C06HBa0024L21.1-1+_PGL-2_AGS-1_PPS_1 (3620 4687) (frame '0'; 1065 bp, 355 residues) 1 VVARGRGRGR GRTSSRGRGQ APSPSDTRAV TPPPTEEVVR EGKEGENEQV QNEGLPPQPT 61 PEMINQVLAY LNGLSDQGQT PPVFSAPAPQ VSEVQHAATV APRMDASLEI GTFPRLTTGP 121 IMTNDQHELF SKFLKLKPPV FKGAESEDAY DFLVDCHELL HKMGIVERFG VEFVTYQFQG 181 NAKMWWRSHV ECQPTEAPPM TWASFSSLFM EKYIPRTLRD RKRDEFLSLE QGRMSVTAYE 241 AKFRALSRYA TQLCFSPQER IRRFVKGLRS ELRISALQVA ATAKSFQEVV DFVIEVEGVK 301 PDDFTMASTS KRFRRGGEFN GSYSREQDSG GYSVRPIQSS LQTVVGSTSD RSTLL- >C06HBa0024L21.1-1+_PGL-2_AGS-1_PPS_2 (4783 5148) (frame '2'; 363 bp, 121 residues) 1 SEVEVVMEEA VILEGVVTEV MVVTKTAGVT DKWELLQRNL VEATNRQVIG PIVTLSLGGL 61 KRRHLMLLSQ VIFWFVIAWL LYCLILDPHF LMYLPHLLMV LNYIVNCLTC LFVFLLRWVS 121 L- AGS-2 (5651 5226,4483 4309) SCR (e 0.913 d 0.000 a 0.000,e 0.926) Exon 1 5651 5226 ( 426 n); score: 0.913 Intron 1 5225 4484 ( 742 n); Pd: 0.000 Pa: 0.000 Exon 2 4483 4309 ( 175 n); score: 0.926 PGS (5651 5226,4483 4309) SGN-E353359+ 3-phase translation of AGS-2 (-strand): . . . . . . 5651 TAACTCTTGAAGTTGAGCCTTTAACTCTCTTAACTCTGCGGGAGCCATTCTATAAGGGGG - L L K L S L - L S - L C G S H S I R G N S - S - A F N S L N S A G A I L - G G T L E V E P L T L L T L R E P F Y K G . . . . . . 5591 TATAGAAATGGGGCGAGTACTCGGTTCAAGATCGATGCAAAAGTCAATATCCCTATCCGG Y R N G A S T R F K I D A K V N I P I R I E M G R V L G S R S M Q K S I S L S G V - K W G E Y S V Q D R C K S Q Y P Y P . . . . . . 5531 TGGCATACCAGGAAGGTCTGCGGGAAAAACATCTAGAAACTCACGGACTATCGAAACCGA W H T R K V C G K N I - K L T D Y R N R G I P G R S A G K T S R N S R T I E T D V A Y Q E G L R E K H L E T H G L S K P . . . . . . 5471 CTCAATTGAAGGTACTTGGGTAATATCATCCCTGAGGTGTGCCAAGAAAGCTAAACAACC L N - R Y L G N I I P E V C Q E S - T T S I E G T W V I S S L R C A K K A K Q P T Q L K V L G - Y H P - G V P R K L N N . . . . . . 5411 CTTACTAACCATTCTCTTAGCACGAAGAAAGGAGACAATACGAACCGGGTTGGAAGTGTA L T N H S L S T K K G D N T N R V G S V L L T I L L A R R K E T I R T G L E V - P Y - P F S - H E E R R Q Y E P G W K C . . . . . . 5351 GTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATT V T L P H - R I C P R L G - R H S F S I S P S H T N G S V P G L A N V T V L A L S H P P T L T D L S Q A W L T S Q F - H . . . . . . 5291 ACAATCCAAGATTGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCGAAGTC T I Q D C K I W R K P S H T Q N Y I E V Q S K I A K F G E S Q V I P R I T S K S Y N P R L Q N L E K A K S Y P E L H R S . : . . . . . 5231 AACCAT : TTCTTGAAAGGATTTTGCCGTAGCCGCTACCTGTAAGGCTGAAATCCGCAATTC N H : F L K G F C R S R Y L - G - N P Q F T I : S - K D F A V A A T C K A E I R N S Q P : F L E R I L P - P L P V R L K S A I . . . . . . 4429 TGACCTCAATCCCTTCACAAAACGGCGAATCCGCTCTTGTGGACTGAAACAAAGTTGGGT - P Q S L H K T A N P L L W T E T K L G D L N P F T K R R I R S C G L K Q S W V L T S I P S Q N G E S A L V D - N K V G . . . . . . 4369 GGCATACCTGGATAATGCACGAAACTTAGCCTCATATGCAGTAACCGACATCCTACCTTG G I P G - C T K L S L I C S N R H P T L A Y L D N A R N L A S Y A V T D I L P C W H T W I M H E T - P H M Q - P T S Y L . 4309 C Maximal non-overlapping open reading frames (>= 64 codons): >C06HBa0024L21.1-1-_PGL-2_AGS-2_PPS_1 (5596 5351) (frame '2'; 243 bp, 81 residues) 1 GGIEMGRVLG SRSMQKSISL SGGIPGRSAG KTSRNSRTIE TDSIEGTWVI SSLRCAKKAK 61 QPLLTILLAR RKETIRTGLE V- AGS-3 (5142 5113,5077 4549) SCR (e 0.633 d 0.989 a 0.000,e 0.868) Exon 1 5142 5113 ( 30 n); score: 0.633 Intron 1 5112 5078 ( 35 n); Pd: 0.989 Pa: 0.000 Exon 2 5077 4549 ( 529 n); score: 0.868 PGS (5142 5113,5077 4549) SGN-E577713+ 3-phase translation of AGS-3 (-strand): . . . : . . . 5142 ACTCACCCACCGGAGTAGAAACACGAATAG : TTAGCAAATGAGGAAGATACATAAGAAAAT T H P P E - K H E - : L A N E E D T - E N L T H R S R N T N S : - Q M R K I H K K M S P T G V E T R I : V S K - G R Y I R K . . . . . . 5047 GTGGATCCAGGATCAAACAATACAGAAGCCACGCAATCACAAACCAAAAGATTACCTGTG V D P G S N N T E A T Q S Q T K R L P V W I Q D Q T I Q K P R N H K P K D Y L - C G S R I K Q Y R S H A I T N Q K I T C . . . . . . 4987 ATAACAACATCAGATGTCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTA I T T S D V S A S D R P G K A - Q W A L - Q H Q M S P L Q T A Q G K R N N G P Y D N N I R C L R F R P P R E S V T M G P . . . . . . 4927 TCACCTGTCTGTTCGTTGCCTCTACCAGGTTGCGCTGCAGTAGTTCCCATTTGTCCGTCA S P V C S L P L P G C A A V V P I C P S H L S V R C L Y Q V A L Q - F P F V R H I T C L F V A S T R L R C S S S H L S V . . . . . . 4867 CCCCGGCCGTTTTGGTGACCACCATTACCTCGGTCACCACGCCCTCCAGAATGACGGCCT P R P F W - P P L P R S P R P P E - R P P G R F G D H H Y L G H H A L Q N D G L T P A V L V T T I T S V T T P S R M T A . . . . . . 4807 CTTCCATGACCACCTCTACCTCTGACTATTTGAGGTCTGTAACTCTGTTTTGGACAATAC L P - P P L P L T I - G L - L C F G Q Y F H D H L Y L - L F E V C N S V L D N T S S M T T S T S D Y L R S V T L F W T I . . . . . . 4747 CTCTTAATTTGTCCAGTCTCCCCACATCCATAACATTCTCTGGATTCAAGCATAGGTCTC L L I C P V S P H P - H S L D S S I G L S - F V Q S P H I H N I L W I Q A - V S P L N L S S L P T S I T F S G F K H R S . . . . . . 4687 TCAGAGAAGTGTTGACCGGTCTGAGGTGGACCCAACTACAGTCTGTAGTGAAGACTGAAT S E K C - P V - G G P N Y S L - - R L N Q R S V D R S E V D P T T V C S E D - I L R E V L T G L R W T Q L Q S V V K T E . . . . . . 4627 TGGTCGGACTGAGTAACCTCCTGAATCCTGTTCTCTAGAGTAAGAACCATTAAACTCACC W S D - V T S - I L F S R V R T I K L T G R T E - P P E S C S L E - E P L N S P L V G L S N L L N P V L - S K N H - T H . . 4567 TCCCCTTCGAAACCTTTTT S P S K P F P L R N L F L P F E T F Maximal non-overlapping open reading frames (>= 64 codons): >C06HBa0024L21.1-1-_PGL-2_AGS-3_PPS_1 (5066 4590) (frame '0'; 474 bp, 158 residues) 1 GRYIRKCGSR IKQYRSHAIT NQKITCDNNI RCLRFRPPRE SVTMGPITCL FVASTRLRCS 61 SSHLSVTPAV LVTTITSVTT PSRMTASSMT TSTSDYLRSV TLFWTIPLNL SSLPTSITFS 121 GFKHRSLREV LTGLRWTQLQ SVVKTELVGL SNLLNPVL- ... finished at: Mon Jul 24 23:16:04 2006 ________________________________________________________________________________ Sequence 2: C06HBa0024L21.1-2, from 1 to 2891, both strands analyzed. ... started at: Mon Jul 24 23:16:04 2006 EST library file: /tmp/cxgn-bacpublish-resources-MvEQ8q/sgn_ests; matching gDNA +strand ... ... found all matches, elapsed seconds = 5 ... matches indexed, elapsed seconds = 5 HitsTableSize = 17 EST library file: /tmp/cxgn-bacpublish-resources-MvEQ8q/sgn_ests; matching gDNA -strand ... ... found all matches, elapsed seconds = 5 ... matches indexed, elapsed seconds = 5 HitsTableSize = 0 ******************************************************************************** EST sequence 9 +strand 582 n (File: SGN-E256887+) 1 AAAAAGGAAC CATTCATTTC TCTAAATCCG TTTGGTCAAG TTCCAGCTTT TGAAGATGGA 61 GATTTAAAGC TTTTTGAGTC AAGAGCTATT ACACAATACA TAGCTCACAC ATATGCAGAC 121 AAAGGGAACC AACTTTTACC CAATGACCCA AAGAAAATGG CAGTCATGTC TGTATGGATG 181 GAAGTAGAAG CCCAGAAATT CGACCCCATT GGTTCAAAAC TAGGGTTTGA GATTGTCATT 241 AAGCCAATGT TGGGCATGGT GACTGATGAT GCAGTCGTGG CAGAGAACGA AGAGAAACTC 301 GGGAAACTTC TTGATGTGTA TGAATCTAGA CTCAAGGAAT CGAAATATTT GGGTGGTGAG 361 AGTTTCACCC TAGCTGATTT GCACCACGCC CCGTCTTTGC ACTACTTGTC GGGGAGTAAA 421 GTGAAGAGCT TGTTCGATGC TAGGCCTCAT GTTAGCGCTT GGGTTGCTGA TATTTTGGCT 481 AGGCCAGCTT GGTCTAAGAC AATTGAGTTG TCAAAACAGT AAGTTTAGTG GCGGATGGGT 541 GAGTATCGCG TTGAAAAGGA AGGGGAACAA TAGTTTGGAA AT Predicted gene structure (within gDNA segment 1 to 2891): Exon 1 2 46 ( 45 n); cDNA 31 76 ( 46 n); score: 0.878 Intron 1 47 649 ( 603 n); Pd: 0.000 (s: 0.88), Pa: 0.989 (s: 0.96) Exon 2 650 1096 ( 447 n); cDNA 77 523 ( 447 n); score: 0.890 MATCH C06HBa0024L21.1-2+ SGN-E256887+ 0.890 492 0.845 C PGS_C06HBa0024L21.1-2+_SGN-E256887+ (2 46,650 1096) Alignment (genomic DNA sequence = upper lines): TTTGGTC-AG TTCCTGCTTT TGAAGATGGA GATCTCAAGC TTTTTGGTAA GTTAAACTTT 60 ||||||| || |||| ||||| |||||||||| ||| | |||| |||||| TTTGGTCAAG TTCCAGCTTT TGAAGATGGA GATTTAAAGC TTTTTG.... .......... 76 TTTTGCACAT TCATAATCTA ATATTTGTGA TTTTACATAT ATATCTATAT ATGTTCTCGT 120 .......... .......... .......... .......... .......... .......... 76 GTTAAAAATA CTCGGGATTT AAAATTTATA AACTCGAGTT CTTTATTATA CTACAATTTA 180 .......... .......... .......... .......... .......... .......... 76 TTCGATTTAC AAAATCTAAA TAAAAGTTAC TAATTCGAAT GAACACATAG CATGTATACT 240 .......... .......... .......... .......... .......... .......... 76 AGGATCACCT TTTGATTTAG TTGAACTATT AAGTTTATAC TATGTTTGTC TCGAACAAAT 300 .......... .......... .......... .......... .......... .......... 76 TCGACTAATT TAAATTTGTG CGAACAACAT ATCCTGTAAT TAGTATAGTT CCTCAAATGG 360 .......... .......... .......... .......... .......... .......... 76 TGTCTAAATT GTATATATAC CTCAAGAAAA TCGTTTCTCA AAACTACACT GTATTAACGT 420 .......... .......... .......... .......... .......... .......... 76 ATGACCTATT TAAGGAGAAA TACTCTATCT TTGGTTTCAA GATCTAAAGT AAAATTAGAT 480 .......... .......... .......... .......... .......... .......... 76 ACTAGTTCGA ATGAATACAC AACTTGTATA CTATGTCACA TATTCAGTAT AATTCTATAA 540 .......... .......... .......... .......... .......... .......... 76 GTGCGATCTG GGGAAGGTAG TATGTATGCA TACCTTATGC TCTACCTTCG TGTGGTAGAG 600 .......... .......... .......... .......... .......... .......... 76 AGGATGTTTT CGATAGACGT TTGATTTTTG TGAATTATTG TGAATGCAGA GTCAAGAGCT 660 | |||||||||| .......... .......... .......... .......... .........A GTCAAGAGCT 87 ATTACACAAT ACATAGCTCA CACATATGCT GACAAGGGGA ACCAACTCTT ACCAAATGAC 720 |||||||||| |||||||||| ||||||||| ||||| |||| ||||||| || ||| |||||| ATTACACAAT ACATAGCTCA CACATATGCA GACAAAGGGA ACCAACTTTT ACCCAATGAC 147 CCAAAGAAAA TGGCAATCAT GTATGTATGG ATTGAAGTTG AAGCCCAAAG ATTTGAACCT 780 |||||||||| ||||| |||| || ||||||| || ||||| | ||||||| | ||| || || CCAAAGAAAA TGGCAGTCAT GTCTGTATGG ATGGAAGTAG AAGCCCAGAA ATTCGACCCC 207 GTTGTTTCAA AACTATGCTA TGAGATTGTC ATCAAGCCAT TGTTGGACAT GGTGACTGAT 840 ||| ||||| ||||| | | |||||||||| || |||||| |||||| ||| |||||||||| ATTGGTTCAA AACTAGGGTT TGAGATTGTC ATTAAGCCAA TGTTGGGCAT GGTGACTGAT 267 GATGCAATCG TGGCGGAGAA CGAAGAAAAA CTTAGCAAAC TTCTTGACGT TTATGAATCT 900 |||||| ||| |||| ||||| |||||| ||| || | |||| ||||||| || ||||||||| GATGCAGTCG TGGCAGAGAA CGAAGAGAAA CTCGGGAAAC TTCTTGATGT GTATGAATCT 327 AGACTCAAGG ATTCGAAATA TTTGGGTGGT GATAGTTTTA CCCTAGCTGA TTTGAACCAC 960 |||||||||| | |||||||| |||||||||| || ||||| | |||||||||| |||| ||||| AGACTCAAGG AATCGAAATA TTTGGGTGGT GAGAGTTTCA CCCTAGCTGA TTTGCACCAC 387 GCCCCGGCTT TGCACTACTT GATGGGGACG AAAGTGAAGA GCTTGTTCAA TGCTAGGCCT 1020 |||||| ||| |||||||||| | ||||| |||||||||| |||||||| | |||||||||| GCCCCGTCTT TGCACTACTT GTCGGGGAGT AAAGTGAAGA GCTTGTTCGA TGCTAGGCCT 447 CATGTTGGTG CTTGGGTTGC TAATATCTTG GCTAGGCCAG CTTGGGCTAA GTCACTTGAG 1080 |||||| | | |||||||||| | |||| ||| |||||||||| ||||| |||| | || ||||| CATGTTAGCG CTTGGGTTGC TGATATTTTG GCTAGGCCAG CTTGGTCTAA GACAATTGAG 507 TTGACTAAAT AGTAAG 1096 ||| | ||| |||||| TTGTCAAAAC AGTAAG 523 hqPGS_C06HBa0024L21.1-2+_SGN-E256887+ (2 46,650 1096) ******************************************************************************** EST sequence 11 +strand 559 n (File: SGN-E259458+) 1 CTAAATCCGT TTGGTCAAGT TCCAGCTTTT GAAGATGGAG ATTTAAAGCT TTTTGAGTCA 61 AGAGCTATTA CACAATACAT AGCTCACACA TATGCAGACA AAGGGAACCA ACTTTTACCC 121 AATGACCCAA AGAAAATGGC AGTCATGTCT GTATGGATGG AAGTAGAAGC CCAGAAATTC 181 GACCCCATTG GTTCAAAACT AGGGTTTGAG ATTGTCATTA AGCCAATGTT GGGCATGGTG 241 ACTGATGATG CAGTCGTGGC AGAGAACGAA GAGAAACTCG GGAAACTTCT TGATGTGTAT 301 GAATCTAGAC TCAAGGAATC GAAATATTTG GGTGGTGAGA GTTTCACCCT AGCTGATTTG 361 CACCACGCCC CGTCTTTGCA CTACTTGTCG GGGAGTAAAG TGAAGAGCTT GTTCGATGCT 421 AGGCCTCATG TTAGCGCTTG GGTTGCTGAT ATTTTGGCTA GGCCAGCTTG GTCTAAGACA 481 ATTGAGTTGT CAAAACAGTA AGTTTAGTGG CGGATGGGTG AGTATCGCGT TGAAAGGAAG 541 GGGGAACAAT AGTTGGAAA Predicted gene structure (within gDNA segment 1 to 2891): Exon 1 2 46 ( 45 n); cDNA 10 55 ( 46 n); score: 0.878 Intron 1 47 649 ( 603 n); Pd: 0.000 (s: 0.88), Pa: 0.989 (s: 0.96) Exon 2 650 1096 ( 447 n); cDNA 56 502 ( 447 n); score: 0.890 MATCH C06HBa0024L21.1-2+ SGN-E259458+ 0.890 492 0.880 C PGS_C06HBa0024L21.1-2+_SGN-E259458+ (2 46,650 1096) Alignment (genomic DNA sequence = upper lines): TTTGGTC-AG TTCCTGCTTT TGAAGATGGA GATCTCAAGC TTTTTGGTAA GTTAAACTTT 60 ||||||| || |||| ||||| |||||||||| ||| | |||| |||||| TTTGGTCAAG TTCCAGCTTT TGAAGATGGA GATTTAAAGC TTTTTG.... .......... 55 TTTTGCACAT TCATAATCTA ATATTTGTGA TTTTACATAT ATATCTATAT ATGTTCTCGT 120 .......... .......... .......... .......... .......... .......... 55 GTTAAAAATA CTCGGGATTT AAAATTTATA AACTCGAGTT CTTTATTATA CTACAATTTA 180 .......... .......... .......... .......... .......... .......... 55 TTCGATTTAC AAAATCTAAA TAAAAGTTAC TAATTCGAAT GAACACATAG CATGTATACT 240 .......... .......... .......... .......... .......... .......... 55 AGGATCACCT TTTGATTTAG TTGAACTATT AAGTTTATAC TATGTTTGTC TCGAACAAAT 300 .......... .......... .......... .......... .......... .......... 55 TCGACTAATT TAAATTTGTG CGAACAACAT ATCCTGTAAT TAGTATAGTT CCTCAAATGG 360 .......... .......... .......... .......... .......... .......... 55 TGTCTAAATT GTATATATAC CTCAAGAAAA TCGTTTCTCA AAACTACACT GTATTAACGT 420 .......... .......... .......... .......... .......... .......... 55 ATGACCTATT TAAGGAGAAA TACTCTATCT TTGGTTTCAA GATCTAAAGT AAAATTAGAT 480 .......... .......... .......... .......... .......... .......... 55 ACTAGTTCGA ATGAATACAC AACTTGTATA CTATGTCACA TATTCAGTAT AATTCTATAA 540 .......... .......... .......... .......... .......... .......... 55 GTGCGATCTG GGGAAGGTAG TATGTATGCA TACCTTATGC TCTACCTTCG TGTGGTAGAG 600 .......... .......... .......... .......... .......... .......... 55 AGGATGTTTT CGATAGACGT TTGATTTTTG TGAATTATTG TGAATGCAGA GTCAAGAGCT 660 | |||||||||| .......... .......... .......... .......... .........A GTCAAGAGCT 66 ATTACACAAT ACATAGCTCA CACATATGCT GACAAGGGGA ACCAACTCTT ACCAAATGAC 720 |||||||||| |||||||||| ||||||||| ||||| |||| ||||||| || ||| |||||| ATTACACAAT ACATAGCTCA CACATATGCA GACAAAGGGA ACCAACTTTT ACCCAATGAC 126 CCAAAGAAAA TGGCAATCAT GTATGTATGG ATTGAAGTTG AAGCCCAAAG ATTTGAACCT 780 |||||||||| ||||| |||| || ||||||| || ||||| | ||||||| | ||| || || CCAAAGAAAA TGGCAGTCAT GTCTGTATGG ATGGAAGTAG AAGCCCAGAA ATTCGACCCC 186 GTTGTTTCAA AACTATGCTA TGAGATTGTC ATCAAGCCAT TGTTGGACAT GGTGACTGAT 840 ||| ||||| ||||| | | |||||||||| || |||||| |||||| ||| |||||||||| ATTGGTTCAA AACTAGGGTT TGAGATTGTC ATTAAGCCAA TGTTGGGCAT GGTGACTGAT 246 GATGCAATCG TGGCGGAGAA CGAAGAAAAA CTTAGCAAAC TTCTTGACGT TTATGAATCT 900 |||||| ||| |||| ||||| |||||| ||| || | |||| ||||||| || ||||||||| GATGCAGTCG TGGCAGAGAA CGAAGAGAAA CTCGGGAAAC TTCTTGATGT GTATGAATCT 306 AGACTCAAGG ATTCGAAATA TTTGGGTGGT GATAGTTTTA CCCTAGCTGA TTTGAACCAC 960 |||||||||| | |||||||| |||||||||| || ||||| | |||||||||| |||| ||||| AGACTCAAGG AATCGAAATA TTTGGGTGGT GAGAGTTTCA CCCTAGCTGA TTTGCACCAC 366 GCCCCGGCTT TGCACTACTT GATGGGGACG AAAGTGAAGA GCTTGTTCAA TGCTAGGCCT 1020 |||||| ||| |||||||||| | ||||| |||||||||| |||||||| | |||||||||| GCCCCGTCTT TGCACTACTT GTCGGGGAGT AAAGTGAAGA GCTTGTTCGA TGCTAGGCCT 426 CATGTTGGTG CTTGGGTTGC TAATATCTTG GCTAGGCCAG CTTGGGCTAA GTCACTTGAG 1080 |||||| | | |||||||||| | |||| ||| |||||||||| ||||| |||| | || ||||| CATGTTAGCG CTTGGGTTGC TGATATTTTG GCTAGGCCAG CTTGGTCTAA GACAATTGAG 486 TTGACTAAAT AGTAAG 1096 ||| | ||| |||||| TTGTCAAAAC AGTAAG 502 hqPGS_C06HBa0024L21.1-2+_SGN-E259458+ (2 46,650 1096) ******************************************************************************** EST sequence 12 +strand 570 n (File: SGN-E259186+) 1 GTTTGGTCAA GTTCCAGCTT TTGAAGATGG AGATTTAAAG CTTTTTGAGT CAAGAGCTAT 61 TACACAATAC ATAGCTCACA CATATGCAGA CAAAGGGAAC CCAACTTTTA CCCAATGACC 121 CAAAGAAAAT GGCAGTCATG TCTGTATGGA TGGAAGTAGA AGCCCAGAAA TTCGACCCCA 181 TTGGTTCAAA ACTAGGGTTT GAGATTGTCA TTAAGCCAAT GTTGGGCATG GTGACTGATG 241 ATGCAGTCGT GGCAGAGAAC GAAGAGAAAC TCGGGAAACT TCTTGATGTG TATGAATCTA 301 GACTCAAGGA ATCGAAATAT TTGGGTGGTG AGAGTTTCAC CCTAGCTGAT TTGCACCACG 361 CCCCGTCTTT GCACTACTTG TCGGGGAGTA AAGTGAAGAG CTTGTTCGAT GCTAGGCCTC 421 ATGTTAGCGC TTGGGTTGCT GATATTTTGG CTAGGCCAGC TTGGTCTAAG ACAATTGAGT 481 TGTCAAAACA GTAAGTTTAG TGGCGGATGG GTGAGTATCG CGTTGAAAGG AAGGGGGAAC 541 AATAGTTGGA AATGGCTGCT AATACCTCGT Predicted gene structure (within gDNA segment 1 to 2891): Exon 1 2 46 ( 45 n); cDNA 2 47 ( 46 n); score: 0.878 Intron 1 47 649 ( 603 n); Pd: 0.000 (s: 0.88), Pa: 0.989 (s: 0.96) Exon 2 650 1096 ( 447 n); cDNA 48 495 ( 448 n); score: 0.885 MATCH C06HBa0024L21.1-2+ SGN-E259186+ 0.885 492 0.863 C PGS_C06HBa0024L21.1-2+_SGN-E259186+ (2 46,650 1096) Alignment (genomic DNA sequence = upper lines): TTTGGTC-AG TTCCTGCTTT TGAAGATGGA GATCTCAAGC TTTTTGGTAA GTTAAACTTT 60 ||||||| || |||| ||||| |||||||||| ||| | |||| |||||| TTTGGTCAAG TTCCAGCTTT TGAAGATGGA GATTTAAAGC TTTTTG.... .......... 47 TTTTGCACAT TCATAATCTA ATATTTGTGA TTTTACATAT ATATCTATAT ATGTTCTCGT 120 .......... .......... .......... .......... .......... .......... 47 GTTAAAAATA CTCGGGATTT AAAATTTATA AACTCGAGTT CTTTATTATA CTACAATTTA 180 .......... .......... .......... .......... .......... .......... 47 TTCGATTTAC AAAATCTAAA TAAAAGTTAC TAATTCGAAT GAACACATAG CATGTATACT 240 .......... .......... .......... .......... .......... .......... 47 AGGATCACCT TTTGATTTAG TTGAACTATT AAGTTTATAC TATGTTTGTC TCGAACAAAT 300 .......... .......... .......... .......... .......... .......... 47 TCGACTAATT TAAATTTGTG CGAACAACAT ATCCTGTAAT TAGTATAGTT CCTCAAATGG 360 .......... .......... .......... .......... .......... .......... 47 TGTCTAAATT GTATATATAC CTCAAGAAAA TCGTTTCTCA AAACTACACT GTATTAACGT 420 .......... .......... .......... .......... .......... .......... 47 ATGACCTATT TAAGGAGAAA TACTCTATCT TTGGTTTCAA GATCTAAAGT AAAATTAGAT 480 .......... .......... .......... .......... .......... .......... 47 ACTAGTTCGA ATGAATACAC AACTTGTATA CTATGTCACA TATTCAGTAT AATTCTATAA 540 .......... .......... .......... .......... .......... .......... 47 GTGCGATCTG GGGAAGGTAG TATGTATGCA TACCTTATGC TCTACCTTCG TGTGGTAGAG 600 .......... .......... .......... .......... .......... .......... 47 AGGATGTTTT CGATAGACGT TTGATTTTTG TGAATTATTG TGAATGCAGA GTCAAGAGCT 660 | |||||||||| .......... .......... .......... .......... .........A GTCAAGAGCT 58 ATTACACAAT ACATAGCTCA CACATATGCT GACAAGGGGA A-CCAACTCT TACCAAATGA 719 |||||||||| |||||||||| ||||||||| ||||| |||| | |||||| | |||| ||||| ATTACACAAT ACATAGCTCA CACATATGCA GACAAAGGGA ACCCAACTTT TACCCAATGA 118 CCCAAAGAAA ATGGCAATCA TGTATGTATG GATTGAAGTT GAAGCCCAAA GATTTGAACC 779 |||||||||| |||||| ||| ||| |||||| ||| ||||| |||||||| | ||| || || CCCAAAGAAA ATGGCAGTCA TGTCTGTATG GATGGAAGTA GAAGCCCAGA AATTCGACCC 178 TGTTGTTTCA AAACTATGCT ATGAGATTGT CATCAAGCCA TTGTTGGACA TGGTGACTGA 839 ||| |||| |||||| | | ||||||||| ||| |||||| |||||| || |||||||||| CATTGGTTCA AAACTAGGGT TTGAGATTGT CATTAAGCCA ATGTTGGGCA TGGTGACTGA 238 TGATGCAATC GTGGCGGAGA ACGAAGAAAA ACTTAGCAAA CTTCTTGACG TTTATGAATC 899 ||||||| || ||||| |||| ||||||| || ||| | ||| |||||||| | | |||||||| TGATGCAGTC GTGGCAGAGA ACGAAGAGAA ACTCGGGAAA CTTCTTGATG TGTATGAATC 298 TAGACTCAAG GATTCGAAAT ATTTGGGTGG TGATAGTTTT ACCCTAGCTG ATTTGAACCA 959 |||||||||| || ||||||| |||||||||| ||| ||||| |||||||||| ||||| |||| TAGACTCAAG GAATCGAAAT ATTTGGGTGG TGAGAGTTTC ACCCTAGCTG ATTTGCACCA 358 CGCCCCGGCT TTGCACTACT TGATGGGGAC GAAAGTGAAG AGCTTGTTCA ATGCTAGGCC 1019 ||||||| || |||||||||| || ||||| ||||||||| ||||||||| |||||||||| CGCCCCGTCT TTGCACTACT TGTCGGGGAG TAAAGTGAAG AGCTTGTTCG ATGCTAGGCC 418 TCATGTTGGT GCTTGGGTTG CTAATATCTT GGCTAGGCCA GCTTGGGCTA AGTCACTTGA 1079 ||||||| | |||||||||| || |||| || |||||||||| |||||| ||| || || |||| TCATGTTAGC GCTTGGGTTG CTGATATTTT GGCTAGGCCA GCTTGGTCTA AGACAATTGA 478 GTTGACTAAA TAGTAAG 1096 |||| | ||| |||||| GTTGTCAAAA CAGTAAG 495 hqPGS_C06HBa0024L21.1-2+_SGN-E259186+ (2 46,650 1096) ******************************************************************************** EST sequence 13 +strand 599 n (File: SGN-E309123+) 1 ATCTCACACA CAAATTTCAT TTTCTACTTT CACTTTCTCT CTCTAGAAAA CAAAAATGGC 61 GATCAAGGTT CATGGCCCTA TGATGTCCCC TGCTGTTATG AGAGTCGTAG CTACACTCAA 121 AGAGAAAGAT CTTGATTTTG AACTTGTTCC TGTTAATATG CAAGCTGGTG ATCACAAAAA 181 GGAACCATTC ATTTCTCTAA ATCCGTTTGG TCAAGTTCCA GCTTTTGAAG ATGGAGATTT 241 AAAGCTTTTT GAGTCAAGAG CTATTACACA ATACATAGCT CACACATATG CAGACAAAGG 301 GAACCAACTT TTACCCAATG ACCCAAAGAA AATGGCAGTC ATGTCTGTAT GGATGGAAGT 361 AGAAGCCCAG AAATTCGACC CCATTGGTTC AAAACTAGGG TTTGAGATTG TCATTAAGCC 421 AATGTTGGGC ATGGTGACTG ATGATGCAGT CGTGGCAGAG AACGAAGAGA AACTCGGGAA 481 ACTTCTTGAT GTGTATGAAT CTAGACTCAA GGAATCGAAA TATTTGGGTG GTGAGAGTTT 541 CACCCTAGCT GATTTGCACC ACGCCCCGTC TTTGCACTAC TTGTCGGGGA GTAAAGTGA Predicted gene structure (within gDNA segment 1 to 2192): Exon 1 2 46 ( 45 n); cDNA 206 251 ( 46 n); score: 0.878 Intron 1 47 649 ( 603 n); Pd: 0.000 (s: 0.88), Pa: 0.989 (s: 0.96) Exon 2 650 997 ( 348 n); cDNA 252 599 ( 348 n); score: 0.891 MATCH C06HBa0024L21.1-2+ SGN-E309123+ 0.891 393 0.656 C PGS_C06HBa0024L21.1-2+_SGN-E309123+ (2 46,650 997) Alignment (genomic DNA sequence = upper lines): TTTGGTC-AG TTCCTGCTTT TGAAGATGGA GATCTCAAGC TTTTTGGTAA GTTAAACTTT 60 ||||||| || |||| ||||| |||||||||| ||| | |||| |||||| TTTGGTCAAG TTCCAGCTTT TGAAGATGGA GATTTAAAGC TTTTTG.... .......... 251 TTTTGCACAT TCATAATCTA ATATTTGTGA TTTTACATAT ATATCTATAT ATGTTCTCGT 120 .......... .......... .......... .......... .......... .......... 251 GTTAAAAATA CTCGGGATTT AAAATTTATA AACTCGAGTT CTTTATTATA CTACAATTTA 180 .......... .......... .......... .......... .......... .......... 251 TTCGATTTAC AAAATCTAAA TAAAAGTTAC TAATTCGAAT GAACACATAG CATGTATACT 240 .......... .......... .......... .......... .......... .......... 251 AGGATCACCT TTTGATTTAG TTGAACTATT AAGTTTATAC TATGTTTGTC TCGAACAAAT 300 .......... .......... .......... .......... .......... .......... 251 TCGACTAATT TAAATTTGTG CGAACAACAT ATCCTGTAAT TAGTATAGTT CCTCAAATGG 360 .......... .......... .......... .......... .......... .......... 251 TGTCTAAATT GTATATATAC CTCAAGAAAA TCGTTTCTCA AAACTACACT GTATTAACGT 420 .......... .......... .......... .......... .......... .......... 251 ATGACCTATT TAAGGAGAAA TACTCTATCT TTGGTTTCAA GATCTAAAGT AAAATTAGAT 480 .......... .......... .......... .......... .......... .......... 251 ACTAGTTCGA ATGAATACAC AACTTGTATA CTATGTCACA TATTCAGTAT AATTCTATAA 540 .......... .......... .......... .......... .......... .......... 251 GTGCGATCTG GGGAAGGTAG TATGTATGCA TACCTTATGC TCTACCTTCG TGTGGTAGAG 600 .......... .......... .......... .......... .......... .......... 251 AGGATGTTTT CGATAGACGT TTGATTTTTG TGAATTATTG TGAATGCAGA GTCAAGAGCT 660 | |||||||||| .......... .......... .......... .......... .........A GTCAAGAGCT 262 ATTACACAAT ACATAGCTCA CACATATGCT GACAAGGGGA ACCAACTCTT ACCAAATGAC 720 |||||||||| |||||||||| ||||||||| ||||| |||| ||||||| || ||| |||||| ATTACACAAT ACATAGCTCA CACATATGCA GACAAAGGGA ACCAACTTTT ACCCAATGAC 322 CCAAAGAAAA TGGCAATCAT GTATGTATGG ATTGAAGTTG AAGCCCAAAG ATTTGAACCT 780 |||||||||| ||||| |||| || ||||||| || ||||| | ||||||| | ||| || || CCAAAGAAAA TGGCAGTCAT GTCTGTATGG ATGGAAGTAG AAGCCCAGAA ATTCGACCCC 382 GTTGTTTCAA AACTATGCTA TGAGATTGTC ATCAAGCCAT TGTTGGACAT GGTGACTGAT 840 ||| ||||| ||||| | | |||||||||| || |||||| |||||| ||| |||||||||| ATTGGTTCAA AACTAGGGTT TGAGATTGTC ATTAAGCCAA TGTTGGGCAT GGTGACTGAT 442 GATGCAATCG TGGCGGAGAA CGAAGAAAAA CTTAGCAAAC TTCTTGACGT TTATGAATCT 900 |||||| ||| |||| ||||| |||||| ||| || | |||| ||||||| || ||||||||| GATGCAGTCG TGGCAGAGAA CGAAGAGAAA CTCGGGAAAC TTCTTGATGT GTATGAATCT 502 AGACTCAAGG ATTCGAAATA TTTGGGTGGT GATAGTTTTA CCCTAGCTGA TTTGAACCAC 960 |||||||||| | |||||||| |||||||||| || ||||| | |||||||||| |||| ||||| AGACTCAAGG AATCGAAATA TTTGGGTGGT GAGAGTTTCA CCCTAGCTGA TTTGCACCAC 562 GCCCCGGCTT TGCACTACTT GATGGGGACG AAAGTGA 997 |||||| ||| |||||||||| | ||||| ||||||| GCCCCGTCTT TGCACTACTT GTCGGGGAGT AAAGTGA 599 hqPGS_C06HBa0024L21.1-2+_SGN-E309123+ (2 46,650 997) ******************************************************************************** EST sequence 15 +strand 574 n (File: SGN-E283551+) 1 TCATTTTCTA CTTTCACTTT CTCTCTCTAG AAAACAAAAA TGGCGATCAA GGTTCATGGC 61 CCTATGATGT CCCCTGCTGT TATGAGAGTC GTAGCTACAC TCAAAGAGAA AGATCTTGAT 121 TTTGAACTTG TTCCTGTTAA TATGCAAGCT GGTGATCACA AAAAGGAACC ATTCATTTCT 181 CTAAATCCGT TTGGTCAAGT TCCAGCTTTT GAAGATGGAG ATTTAAAGCT TTTTGAGTCA 241 AGAGCTATTA CACAATACAT AGCTCACACA TATGCAGACA AAGGGAACCA ACTTTTACCC 301 AATGACCCAA AGAAAATGGC AGTCATGTCT GTATGGATGG AAGTAGAAGC CCAGAAATTC 361 GACCCCATTG GTTCAAAACT AGGGTTTGAG ATTGTCATTA AGCCAATGTT GGGCATGGTG 421 ACTGATGATG CAGTCGTGGC AGAGAACGAA GAGAAACTCG GGAAACTTCT TGATGTGTAT 481 GAATCTAGAC TCAAGGAATC GAAATATTTG GGTGGTGAGA GTTTCACCCT AGCTGATTTG 541 CACCACGCCC CGTCTTTGCA CTACTTGTCG GGGA Predicted gene structure (within gDNA segment 1 to 2102): Exon 1 2 46 ( 45 n); cDNA 190 235 ( 46 n); score: 0.878 Intron 1 47 649 ( 603 n); Pd: 0.000 (s: 0.88), Pa: 0.989 (s: 0.96) Exon 2 650 988 ( 339 n); cDNA 236 574 ( 339 n); score: 0.894 MATCH C06HBa0024L21.1-2+ SGN-E283551+ 0.894 384 0.669 C PGS_C06HBa0024L21.1-2+_SGN-E283551+ (2 46,650 988) Alignment (genomic DNA sequence = upper lines): TTTGGTC-AG TTCCTGCTTT TGAAGATGGA GATCTCAAGC TTTTTGGTAA GTTAAACTTT 60 ||||||| || |||| ||||| |||||||||| ||| | |||| |||||| TTTGGTCAAG TTCCAGCTTT TGAAGATGGA GATTTAAAGC TTTTTG.... .......... 235 TTTTGCACAT TCATAATCTA ATATTTGTGA TTTTACATAT ATATCTATAT ATGTTCTCGT 120 .......... .......... .......... .......... .......... .......... 235 GTTAAAAATA CTCGGGATTT AAAATTTATA AACTCGAGTT CTTTATTATA CTACAATTTA 180 .......... .......... .......... .......... .......... .......... 235 TTCGATTTAC AAAATCTAAA TAAAAGTTAC TAATTCGAAT GAACACATAG CATGTATACT 240 .......... .......... .......... .......... .......... .......... 235 AGGATCACCT TTTGATTTAG TTGAACTATT AAGTTTATAC TATGTTTGTC TCGAACAAAT 300 .......... .......... .......... .......... .......... .......... 235 TCGACTAATT TAAATTTGTG CGAACAACAT ATCCTGTAAT TAGTATAGTT CCTCAAATGG 360 .......... .......... .......... .......... .......... .......... 235 TGTCTAAATT GTATATATAC CTCAAGAAAA TCGTTTCTCA AAACTACACT GTATTAACGT 420 .......... .......... .......... .......... .......... .......... 235 ATGACCTATT TAAGGAGAAA TACTCTATCT TTGGTTTCAA GATCTAAAGT AAAATTAGAT 480 .......... .......... .......... .......... .......... .......... 235 ACTAGTTCGA ATGAATACAC AACTTGTATA CTATGTCACA TATTCAGTAT AATTCTATAA 540 .......... .......... .......... .......... .......... .......... 235 GTGCGATCTG GGGAAGGTAG TATGTATGCA TACCTTATGC TCTACCTTCG TGTGGTAGAG 600 .......... .......... .......... .......... .......... .......... 235 AGGATGTTTT CGATAGACGT TTGATTTTTG TGAATTATTG TGAATGCAGA GTCAAGAGCT 660 | |||||||||| .......... .......... .......... .......... .........A GTCAAGAGCT 246 ATTACACAAT ACATAGCTCA CACATATGCT GACAAGGGGA ACCAACTCTT ACCAAATGAC 720 |||||||||| |||||||||| ||||||||| ||||| |||| ||||||| || ||| |||||| ATTACACAAT ACATAGCTCA CACATATGCA GACAAAGGGA ACCAACTTTT ACCCAATGAC 306 CCAAAGAAAA TGGCAATCAT GTATGTATGG ATTGAAGTTG AAGCCCAAAG ATTTGAACCT 780 |||||||||| ||||| |||| || ||||||| || ||||| | ||||||| | ||| || || CCAAAGAAAA TGGCAGTCAT GTCTGTATGG ATGGAAGTAG AAGCCCAGAA ATTCGACCCC 366 GTTGTTTCAA AACTATGCTA TGAGATTGTC ATCAAGCCAT TGTTGGACAT GGTGACTGAT 840 ||| ||||| ||||| | | |||||||||| || |||||| |||||| ||| |||||||||| ATTGGTTCAA AACTAGGGTT TGAGATTGTC ATTAAGCCAA TGTTGGGCAT GGTGACTGAT 426 GATGCAATCG TGGCGGAGAA CGAAGAAAAA CTTAGCAAAC TTCTTGACGT TTATGAATCT 900 |||||| ||| |||| ||||| |||||| ||| || | |||| ||||||| || ||||||||| GATGCAGTCG TGGCAGAGAA CGAAGAGAAA CTCGGGAAAC TTCTTGATGT GTATGAATCT 486 AGACTCAAGG ATTCGAAATA TTTGGGTGGT GATAGTTTTA CCCTAGCTGA TTTGAACCAC 960 |||||||||| | |||||||| |||||||||| || ||||| | |||||||||| |||| ||||| AGACTCAAGG AATCGAAATA TTTGGGTGGT GAGAGTTTCA CCCTAGCTGA TTTGCACCAC 546 GCCCCGGCTT TGCACTACTT GATGGGGA 988 |||||| ||| |||||||||| | ||||| GCCCCGTCTT TGCACTACTT GTCGGGGA 574 hqPGS_C06HBa0024L21.1-2+_SGN-E283551+ (2 46,650 988) ******************************************************************************** EST sequence 2 +strand 591 n (File: SGN-E304236+) 1 ACATCTCACA CACAAATTTC ATTTTCTACT TTCACTTTCT CTCTCTAGAA AACAAAAATG 61 GCGATCAAGG TTCATGGCCC TATGATGTCC CCTGCTGTTA TGAGAGTCGT AGCTACACTC 121 AAAGAGAAAG ATCTTGATTT TGAACTTGTT CCTGTTAATA TGCAAGCTGG TGATCACAAA 181 AAGGAACCAT TCATTTCTCT AAATCCGTTT GGTCAAGTTC CAGCTTTTGA AGATGGAGAT 241 TTAAAGCTTT TTGAGTCAAG AGCTATTACA CAATACATAG CTCACACATA TGCAGACAAA 301 GGGAACCAAC TTTTACCCAA TGACCCAAAG AAAATGGCAG TCATGTCTGT ATGGATGGAA 361 GTAGAAGCCC AGAAATTCGA CCCCATTGGT TCAAAACTAG GGTTTGAGAT TGTCATTAAG 421 CCAATGTTGG GCATGGTGAC TGATGATGCA GTCGTGGCAG AGAACGAAGA GAAACTCGGG 481 AAACTTCTTG ATGTGTATGA ATCTAGACTC AAGGAATCGA AATATTTGGG TGGTGAGAGT 541 TTCACCCTAG CTGATTTGCA CCACGCCCCG TCTTTGCACT ACTTGTCGGG G Predicted gene structure (within gDNA segment 1 to 2092): Exon 1 2 46 ( 45 n); cDNA 208 253 ( 46 n); score: 0.878 Intron 1 47 649 ( 603 n); Pd: 0.000 (s: 0.88), Pa: 0.989 (s: 0.96) Exon 2 650 987 ( 338 n); cDNA 254 591 ( 338 n); score: 0.893 MATCH C06HBa0024L21.1-2+ SGN-E304236+ 0.893 383 0.648 C PGS_C06HBa0024L21.1-2+_SGN-E304236+ (2 46,650 987) Alignment (genomic DNA sequence = upper lines): TTTGGTC-AG TTCCTGCTTT TGAAGATGGA GATCTCAAGC TTTTTGGTAA GTTAAACTTT 60 ||||||| || |||| ||||| |||||||||| ||| | |||| |||||| TTTGGTCAAG TTCCAGCTTT TGAAGATGGA GATTTAAAGC TTTTTG.... .......... 253 TTTTGCACAT TCATAATCTA ATATTTGTGA TTTTACATAT ATATCTATAT ATGTTCTCGT 120 .......... .......... .......... .......... .......... .......... 253 GTTAAAAATA CTCGGGATTT AAAATTTATA AACTCGAGTT CTTTATTATA CTACAATTTA 180 .......... .......... .......... .......... .......... .......... 253 TTCGATTTAC AAAATCTAAA TAAAAGTTAC TAATTCGAAT GAACACATAG CATGTATACT 240 .......... .......... .......... .......... .......... .......... 253 AGGATCACCT TTTGATTTAG TTGAACTATT AAGTTTATAC TATGTTTGTC TCGAACAAAT 300 .......... .......... .......... .......... .......... .......... 253 TCGACTAATT TAAATTTGTG CGAACAACAT ATCCTGTAAT TAGTATAGTT CCTCAAATGG 360 .......... .......... .......... .......... .......... .......... 253 TGTCTAAATT GTATATATAC CTCAAGAAAA TCGTTTCTCA AAACTACACT GTATTAACGT 420 .......... .......... .......... .......... .......... .......... 253 ATGACCTATT TAAGGAGAAA TACTCTATCT TTGGTTTCAA GATCTAAAGT AAAATTAGAT 480 .......... .......... .......... .......... .......... .......... 253 ACTAGTTCGA ATGAATACAC AACTTGTATA CTATGTCACA TATTCAGTAT AATTCTATAA 540 .......... .......... .......... .......... .......... .......... 253 GTGCGATCTG GGGAAGGTAG TATGTATGCA TACCTTATGC TCTACCTTCG TGTGGTAGAG 600 .......... .......... .......... .......... .......... .......... 253 AGGATGTTTT CGATAGACGT TTGATTTTTG TGAATTATTG TGAATGCAGA GTCAAGAGCT 660 | |||||||||| .......... .......... .......... .......... .........A GTCAAGAGCT 264 ATTACACAAT ACATAGCTCA CACATATGCT GACAAGGGGA ACCAACTCTT ACCAAATGAC 720 |||||||||| |||||||||| ||||||||| ||||| |||| ||||||| || ||| |||||| ATTACACAAT ACATAGCTCA CACATATGCA GACAAAGGGA ACCAACTTTT ACCCAATGAC 324 CCAAAGAAAA TGGCAATCAT GTATGTATGG ATTGAAGTTG AAGCCCAAAG ATTTGAACCT 780 |||||||||| ||||| |||| || ||||||| || ||||| | ||||||| | ||| || || CCAAAGAAAA TGGCAGTCAT GTCTGTATGG ATGGAAGTAG AAGCCCAGAA ATTCGACCCC 384 GTTGTTTCAA AACTATGCTA TGAGATTGTC ATCAAGCCAT TGTTGGACAT GGTGACTGAT 840 ||| ||||| ||||| | | |||||||||| || |||||| |||||| ||| |||||||||| ATTGGTTCAA AACTAGGGTT TGAGATTGTC ATTAAGCCAA TGTTGGGCAT GGTGACTGAT 444 GATGCAATCG TGGCGGAGAA CGAAGAAAAA CTTAGCAAAC TTCTTGACGT TTATGAATCT 900 |||||| ||| |||| ||||| |||||| ||| || | |||| ||||||| || ||||||||| GATGCAGTCG TGGCAGAGAA CGAAGAGAAA CTCGGGAAAC TTCTTGATGT GTATGAATCT 504 AGACTCAAGG ATTCGAAATA TTTGGGTGGT GATAGTTTTA CCCTAGCTGA TTTGAACCAC 960 |||||||||| | |||||||| |||||||||| || ||||| | |||||||||| |||| ||||| AGACTCAAGG AATCGAAATA TTTGGGTGGT GAGAGTTTCA CCCTAGCTGA TTTGCACCAC 564 GCCCCGGCTT TGCACTACTT GATGGGG 987 |||||| ||| |||||||||| | |||| GCCCCGTCTT TGCACTACTT GTCGGGG 591 hqPGS_C06HBa0024L21.1-2+_SGN-E304236+ (2 46,650 987) ******************************************************************************** EST sequence 5 +strand 539 n (File: SGN-E252214+) 1 AAAACAAAAA TGGCGATCAA GGTTCATGGC CCTATGATGT CCCCTGCTGT TATGAGAGTC 61 GTAGCTACAC TCAAAGAGAA AGATCTTGAT TTTGAACTTG TTCCTGTTAA TATGCAAGCT 121 GGTGATCACA AAAAGGAACC ATTCATTTCT CTAAATCCGT TTGGTCAAGT TCCAGCTTTT 181 GAAGATGGAG ATTTAAAGCT TTTTGAGTCA AGAGCTATTA CACAATACAT AGCTCACACA 241 TATGCAGACA AAGGGAACCA ACTTTTACCC AATGACCCAA AGAAAATGGC AGTCATGTCT 301 GTATGGATGG AAGTAGAAGC CCAGAAATTC GACCCCATTG GTTCAAAACT AGGGTTTGAG 361 ATTGTCATTA AGCCAATGTT GGGCATGGTG ACTGATGATG CAGTCGTGGC AGAGAACGAA 421 GAGAAACTCG GGAAACTTCT TGATGTGTAT GAATCTAGAC TCAAGGAATC GAAATATTTG 481 GGTGGTGAGA GTTTCACCCT AGCTGATTTG CACCACGCCC CGTCTTTGCA CTACTTGTC Predicted gene structure (within gDNA segment 1 to 2052): Exon 1 2 46 ( 45 n); cDNA 160 205 ( 46 n); score: 0.878 Intron 1 47 649 ( 603 n); Pd: 0.000 (s: 0.88), Pa: 0.989 (s: 0.96) Exon 2 650 981 ( 332 n); cDNA 206 537 ( 332 n); score: 0.898 MATCH C06HBa0024L21.1-2+ SGN-E252214+ 0.898 377 0.699 C PGS_C06HBa0024L21.1-2+_SGN-E252214+ (2 46,650 981) Alignment (genomic DNA sequence = upper lines): TTTGGTC-AG TTCCTGCTTT TGAAGATGGA GATCTCAAGC TTTTTGGTAA GTTAAACTTT 60 ||||||| || |||| ||||| |||||||||| ||| | |||| |||||| TTTGGTCAAG TTCCAGCTTT TGAAGATGGA GATTTAAAGC TTTTTG.... .......... 205 TTTTGCACAT TCATAATCTA ATATTTGTGA TTTTACATAT ATATCTATAT ATGTTCTCGT 120 .......... .......... .......... .......... .......... .......... 205 GTTAAAAATA CTCGGGATTT AAAATTTATA AACTCGAGTT CTTTATTATA CTACAATTTA 180 .......... .......... .......... .......... .......... .......... 205 TTCGATTTAC AAAATCTAAA TAAAAGTTAC TAATTCGAAT GAACACATAG CATGTATACT 240 .......... .......... .......... .......... .......... .......... 205 AGGATCACCT TTTGATTTAG TTGAACTATT AAGTTTATAC TATGTTTGTC TCGAACAAAT 300 .......... .......... .......... .......... .......... .......... 205 TCGACTAATT TAAATTTGTG CGAACAACAT ATCCTGTAAT TAGTATAGTT CCTCAAATGG 360 .......... .......... .......... .......... .......... .......... 205 TGTCTAAATT GTATATATAC CTCAAGAAAA TCGTTTCTCA AAACTACACT GTATTAACGT 420 .......... .......... .......... .......... .......... .......... 205 ATGACCTATT TAAGGAGAAA TACTCTATCT TTGGTTTCAA GATCTAAAGT AAAATTAGAT 480 .......... .......... .......... .......... .......... .......... 205 ACTAGTTCGA ATGAATACAC AACTTGTATA CTATGTCACA TATTCAGTAT AATTCTATAA 540 .......... .......... .......... .......... .......... .......... 205 GTGCGATCTG GGGAAGGTAG TATGTATGCA TACCTTATGC TCTACCTTCG TGTGGTAGAG 600 .......... .......... .......... .......... .......... .......... 205 AGGATGTTTT CGATAGACGT TTGATTTTTG TGAATTATTG TGAATGCAGA GTCAAGAGCT 660 | |||||||||| .......... .......... .......... .......... .........A GTCAAGAGCT 216 ATTACACAAT ACATAGCTCA CACATATGCT GACAAGGGGA ACCAACTCTT ACCAAATGAC 720 |||||||||| |||||||||| ||||||||| ||||| |||| ||||||| || ||| |||||| ATTACACAAT ACATAGCTCA CACATATGCA GACAAAGGGA ACCAACTTTT ACCCAATGAC 276 CCAAAGAAAA TGGCAATCAT GTATGTATGG ATTGAAGTTG AAGCCCAAAG ATTTGAACCT 780 |||||||||| ||||| |||| || ||||||| || ||||| | ||||||| | ||| || || CCAAAGAAAA TGGCAGTCAT GTCTGTATGG ATGGAAGTAG AAGCCCAGAA ATTCGACCCC 336 GTTGTTTCAA AACTATGCTA TGAGATTGTC ATCAAGCCAT TGTTGGACAT GGTGACTGAT 840 ||| ||||| ||||| | | |||||||||| || |||||| |||||| ||| |||||||||| ATTGGTTCAA AACTAGGGTT TGAGATTGTC ATTAAGCCAA TGTTGGGCAT GGTGACTGAT 396 GATGCAATCG TGGCGGAGAA CGAAGAAAAA CTTAGCAAAC TTCTTGACGT TTATGAATCT 900 |||||| ||| |||| ||||| |||||| ||| || | |||| ||||||| || ||||||||| GATGCAGTCG TGGCAGAGAA CGAAGAGAAA CTCGGGAAAC TTCTTGATGT GTATGAATCT 456 AGACTCAAGG ATTCGAAATA TTTGGGTGGT GATAGTTTTA CCCTAGCTGA TTTGAACCAC 960 |||||||||| | |||||||| |||||||||| || ||||| | |||||||||| |||| ||||| AGACTCAAGG AATCGAAATA TTTGGGTGGT GAGAGTTTCA CCCTAGCTGA TTTGCACCAC 516 GCCCCGGCTT TGCACTACTT G 981 |||||| ||| |||||||||| | GCCCCGTCTT TGCACTACTT G 537 hqPGS_C06HBa0024L21.1-2+_SGN-E252214+ (2 46,650 981) ******************************************************************************** EST sequence 6 +strand 577 n (File: SGN-E312205+) 1 TCACACACAA ATTTCATTTT CTACTTTCAC TTTCTCTCTC TAGAAAACAA AAATGGCGAT 61 CAAGGTTCAT GGCCCTATGA TGTCCCCTGC TGTTATGAGA GTCGTAGCTA CACTCAAAGA 121 GAAAGATCTT GATTTTGAAC TTGTTCCTGT TAATATGCAA GCTGGTGATC ACAAAAAGGA 181 ACCATTCATT TCTCTAAATC CGTTTGGTCA AGTTCCAGCT TTTGAAGATG GAGATTTAAA 241 GCTTTTTGAG TCAAGAGCTA TTACACAATA CATAGCTCAC ACATATGCAG ACAAAGGGAA 301 CCAACTTTTA CCCAATGACC CAAAGAAAAT GGCAGTCATG TCTGTATGGA TGGAAGTAGA 361 AGCCCAGAAA TTCGACCCCA TTGGTTCAAA ACTAGGGTTT GAGATTGTCA TTAAGCCAAT 421 GTTGGGCATG GTGACTGATG ATGCAGTCGT GGCAGAGAAC GAAGAGAAAC TCGGGAAACT 481 TCTTGATGTG TATGAATCTA GACTCAAGGA ATCGAAATAT TTGGGTGGTG AGAGTTTCAC 541 CCTAGCTGAT TTGCACCACG CCCCGTCTTT GCACTAC Predicted gene structure (within gDNA segment 1 to 2002): Exon 1 2 46 ( 45 n); cDNA 203 248 ( 46 n); score: 0.878 Intron 1 47 649 ( 603 n); Pd: 0.000 (s: 0.88), Pa: 0.989 (s: 0.96) Exon 2 650 978 ( 329 n); cDNA 249 577 ( 329 n); score: 0.897 MATCH C06HBa0024L21.1-2+ SGN-E312205+ 0.897 374 0.648 C PGS_C06HBa0024L21.1-2+_SGN-E312205+ (2 46,650 978) Alignment (genomic DNA sequence = upper lines): TTTGGTC-AG TTCCTGCTTT TGAAGATGGA GATCTCAAGC TTTTTGGTAA GTTAAACTTT 60 ||||||| || |||| ||||| |||||||||| ||| | |||| |||||| TTTGGTCAAG TTCCAGCTTT TGAAGATGGA GATTTAAAGC TTTTTG.... .......... 248 TTTTGCACAT TCATAATCTA ATATTTGTGA TTTTACATAT ATATCTATAT ATGTTCTCGT 120 .......... .......... .......... .......... .......... .......... 248 GTTAAAAATA CTCGGGATTT AAAATTTATA AACTCGAGTT CTTTATTATA CTACAATTTA 180 .......... .......... .......... .......... .......... .......... 248 TTCGATTTAC AAAATCTAAA TAAAAGTTAC TAATTCGAAT GAACACATAG CATGTATACT 240 .......... .......... .......... .......... .......... .......... 248 AGGATCACCT TTTGATTTAG TTGAACTATT AAGTTTATAC TATGTTTGTC TCGAACAAAT 300 .......... .......... .......... .......... .......... .......... 248 TCGACTAATT TAAATTTGTG CGAACAACAT ATCCTGTAAT TAGTATAGTT CCTCAAATGG 360 .......... .......... .......... .......... .......... .......... 248 TGTCTAAATT GTATATATAC CTCAAGAAAA TCGTTTCTCA AAACTACACT GTATTAACGT 420 .......... .......... .......... .......... .......... .......... 248 ATGACCTATT TAAGGAGAAA TACTCTATCT TTGGTTTCAA GATCTAAAGT AAAATTAGAT 480 .......... .......... .......... .......... .......... .......... 248 ACTAGTTCGA ATGAATACAC AACTTGTATA CTATGTCACA TATTCAGTAT AATTCTATAA 540 .......... .......... .......... .......... .......... .......... 248 GTGCGATCTG GGGAAGGTAG TATGTATGCA TACCTTATGC TCTACCTTCG TGTGGTAGAG 600 .......... .......... .......... .......... .......... .......... 248 AGGATGTTTT CGATAGACGT TTGATTTTTG TGAATTATTG TGAATGCAGA GTCAAGAGCT 660 | |||||||||| .......... .......... .......... .......... .........A GTCAAGAGCT 259 ATTACACAAT ACATAGCTCA CACATATGCT GACAAGGGGA ACCAACTCTT ACCAAATGAC 720 |||||||||| |||||||||| ||||||||| ||||| |||| ||||||| || ||| |||||| ATTACACAAT ACATAGCTCA CACATATGCA GACAAAGGGA ACCAACTTTT ACCCAATGAC 319 CCAAAGAAAA TGGCAATCAT GTATGTATGG ATTGAAGTTG AAGCCCAAAG ATTTGAACCT 780 |||||||||| ||||| |||| || ||||||| || ||||| | ||||||| | ||| || || CCAAAGAAAA TGGCAGTCAT GTCTGTATGG ATGGAAGTAG AAGCCCAGAA ATTCGACCCC 379 GTTGTTTCAA AACTATGCTA TGAGATTGTC ATCAAGCCAT TGTTGGACAT GGTGACTGAT 840 ||| ||||| ||||| | | |||||||||| || |||||| |||||| ||| |||||||||| ATTGGTTCAA AACTAGGGTT TGAGATTGTC ATTAAGCCAA TGTTGGGCAT GGTGACTGAT 439 GATGCAATCG TGGCGGAGAA CGAAGAAAAA CTTAGCAAAC TTCTTGACGT TTATGAATCT 900 |||||| ||| |||| ||||| |||||| ||| || | |||| ||||||| || ||||||||| GATGCAGTCG TGGCAGAGAA CGAAGAGAAA CTCGGGAAAC TTCTTGATGT GTATGAATCT 499 AGACTCAAGG ATTCGAAATA TTTGGGTGGT GATAGTTTTA CCCTAGCTGA TTTGAACCAC 960 |||||||||| | |||||||| |||||||||| || ||||| | |||||||||| |||| ||||| AGACTCAAGG AATCGAAATA TTTGGGTGGT GAGAGTTTCA CCCTAGCTGA TTTGCACCAC 559 GCCCCGGCTT TGCACTAC 978 |||||| ||| |||||||| GCCCCGTCTT TGCACTAC 577 hqPGS_C06HBa0024L21.1-2+_SGN-E312205+ (2 46,650 978) ******************************************************************************** EST sequence 7 +strand 558 n (File: SGN-E318444+) 1 TCACACACAA ATTTCATTGT CTACTTTCAC TTTCTCTCTC TAGAAAACAA AAATGGCGAT 61 CAAGGTTCAT GGCCCTATGA TGTCCCCTGC TGTTATGAGA GTCGTAGCTA CACTCAAAGA 121 GAAAGATCTT GATTTTGAAC TTGTTCCTGT TAATATGCAA GCTGGTGATC ACAAAAAGGA 181 ACCATTCATT TCTCTAAATC CGTTTGGTCA AGTTCCAGCT TTTGAAGATG GAGATTTAAA 241 GCTTTTTGAG TCAAGAGCTA TTACACAATA CATAGCTCAC ACATATGCGG ACAAAGGGAA 301 CCAACTTTTA CCCAATGACC CCACGAAAAT GGCAGTCATG TCTGTATGGA TGGAAGTAGA 361 AGCCCAGAAA TTCGACCCCA TTGGTTCAAA ACTAGGGTTT GAGATTGTCA TTAAGCCAAT 421 GTTGGGCATG GTGACTGATG ATGCAATCGT GGCAGAGAAC GAAGAGAAAC TCGGGAAACT 481 TCTTGATGTG TATGAATCTA GACTCAAGGA ATCGAAATAT TTGGGTGGTG AGAGATTCAC 541 CCTAGCTGAT TTGCACCA Predicted gene structure (within gDNA segment 1 to 1812): Exon 1 2 46 ( 45 n); cDNA 203 248 ( 46 n); score: 0.878 Intron 1 47 649 ( 603 n); Pd: 0.000 (s: 0.88), Pa: 0.989 (s: 0.96) Exon 2 650 959 ( 310 n); cDNA 249 558 ( 310 n); score: 0.887 MATCH C06HBa0024L21.1-2+ SGN-E318444+ 0.887 355 0.636 C PGS_C06HBa0024L21.1-2+_SGN-E318444+ (2 46,650 959) Alignment (genomic DNA sequence = upper lines): TTTGGTC-AG TTCCTGCTTT TGAAGATGGA GATCTCAAGC TTTTTGGTAA GTTAAACTTT 60 ||||||| || |||| ||||| |||||||||| ||| | |||| |||||| TTTGGTCAAG TTCCAGCTTT TGAAGATGGA GATTTAAAGC TTTTTG.... .......... 248 TTTTGCACAT TCATAATCTA ATATTTGTGA TTTTACATAT ATATCTATAT ATGTTCTCGT 120 .......... .......... .......... .......... .......... .......... 248 GTTAAAAATA CTCGGGATTT AAAATTTATA AACTCGAGTT CTTTATTATA CTACAATTTA 180 .......... .......... .......... .......... .......... .......... 248 TTCGATTTAC AAAATCTAAA TAAAAGTTAC TAATTCGAAT GAACACATAG CATGTATACT 240 .......... .......... .......... .......... .......... .......... 248 AGGATCACCT TTTGATTTAG TTGAACTATT AAGTTTATAC TATGTTTGTC TCGAACAAAT 300 .......... .......... .......... .......... .......... .......... 248 TCGACTAATT TAAATTTGTG CGAACAACAT ATCCTGTAAT TAGTATAGTT CCTCAAATGG 360 .......... .......... .......... .......... .......... .......... 248 TGTCTAAATT GTATATATAC CTCAAGAAAA TCGTTTCTCA AAACTACACT GTATTAACGT 420 .......... .......... .......... .......... .......... .......... 248 ATGACCTATT TAAGGAGAAA TACTCTATCT TTGGTTTCAA GATCTAAAGT AAAATTAGAT 480 .......... .......... .......... .......... .......... .......... 248 ACTAGTTCGA ATGAATACAC AACTTGTATA CTATGTCACA TATTCAGTAT AATTCTATAA 540 .......... .......... .......... .......... .......... .......... 248 GTGCGATCTG GGGAAGGTAG TATGTATGCA TACCTTATGC TCTACCTTCG TGTGGTAGAG 600 .......... .......... .......... .......... .......... .......... 248 AGGATGTTTT CGATAGACGT TTGATTTTTG TGAATTATTG TGAATGCAGA GTCAAGAGCT 660 | |||||||||| .......... .......... .......... .......... .........A GTCAAGAGCT 259 ATTACACAAT ACATAGCTCA CACATATGCT GACAAGGGGA ACCAACTCTT ACCAAATGAC 720 |||||||||| |||||||||| ||||||||| ||||| |||| ||||||| || ||| |||||| ATTACACAAT ACATAGCTCA CACATATGCG GACAAAGGGA ACCAACTTTT ACCCAATGAC 319 CCAAAGAAAA TGGCAATCAT GTATGTATGG ATTGAAGTTG AAGCCCAAAG ATTTGAACCT 780 || | ||||| ||||| |||| || ||||||| || ||||| | ||||||| | ||| || || CCCACGAAAA TGGCAGTCAT GTCTGTATGG ATGGAAGTAG AAGCCCAGAA ATTCGACCCC 379 GTTGTTTCAA AACTATGCTA TGAGATTGTC ATCAAGCCAT TGTTGGACAT GGTGACTGAT 840 ||| ||||| ||||| | | |||||||||| || |||||| |||||| ||| |||||||||| ATTGGTTCAA AACTAGGGTT TGAGATTGTC ATTAAGCCAA TGTTGGGCAT GGTGACTGAT 439 GATGCAATCG TGGCGGAGAA CGAAGAAAAA CTTAGCAAAC TTCTTGACGT TTATGAATCT 900 |||||||||| |||| ||||| |||||| ||| || | |||| ||||||| || ||||||||| GATGCAATCG TGGCAGAGAA CGAAGAGAAA CTCGGGAAAC TTCTTGATGT GTATGAATCT 499 AGACTCAAGG ATTCGAAATA TTTGGGTGGT GATAGTTTTA CCCTAGCTGA TTTGAACCA 959 |||||||||| | |||||||| |||||||||| || || || | |||||||||| |||| |||| AGACTCAAGG AATCGAAATA TTTGGGTGGT GAGAGATTCA CCCTAGCTGA TTTGCACCA 558 hqPGS_C06HBa0024L21.1-2+_SGN-E318444+ (2 46,650 959) ******************************************************************************** EST sequence 14 +strand 553 n (File: SGN-E290753+) 1 ATCTCACACA CAAATTTCAT TTTCTACTTT CACTTTCTCT CTCTAGAAAA CAAAAATGGC 61 GATCAAGGTT CATGGCCCTA TGATGTCCCC TGCTGTTATG AGAGTCGTAG CTACACTCAA 121 AGAGAAAGAT CTTGATTTTG AACTTGTTCC TGTTAATATG CAAGCTGGTG ATCACAAAAA 181 GGAACCATTC ATTTCTCTAA ATCCGTTTGG TCAAGTTCCA GCTTTTGAAG ATGGAGATTT 241 AAAGCTTTTT GAGTCAAGAG CTATTACACA ATACATAGCT CACACATATG CAGACAAAGG 301 GAACCAACTT TTACCCAATG ACCCAAAGAA AATGGCAGTC ATGTCTGTAT GGATGGAAGT 361 AGAAGCCCAG AAATTCGACC CCATTGGTTC AAAACTAGGG TTTGAGATTG TCATTAAGCC 421 AATGTTGGGC ATGGTGACTG ATGATGCAGT CGTGGCAGAG AACGAAGAGA AACTCGGGAA 481 ACTTCTTGAT GTGTATGAAT CTAGACTCAA GGAATCGAAA TATTTGGGTG GTGAGAGTTT 541 CACCCTAGCT GAT Predicted gene structure (within gDNA segment 1 to 1732): Exon 1 2 46 ( 45 n); cDNA 206 251 ( 46 n); score: 0.878 Intron 1 47 649 ( 603 n); Pd: 0.000 (s: 0.88), Pa: 0.989 (s: 0.96) Exon 2 650 951 ( 302 n); cDNA 252 553 ( 302 n); score: 0.894 MATCH C06HBa0024L21.1-2+ SGN-E290753+ 0.894 347 0.627 C PGS_C06HBa0024L21.1-2+_SGN-E290753+ (2 46,650 951) Alignment (genomic DNA sequence = upper lines): TTTGGTC-AG TTCCTGCTTT TGAAGATGGA GATCTCAAGC TTTTTGGTAA GTTAAACTTT 60 ||||||| || |||| ||||| |||||||||| ||| | |||| |||||| TTTGGTCAAG TTCCAGCTTT TGAAGATGGA GATTTAAAGC TTTTTG.... .......... 251 TTTTGCACAT TCATAATCTA ATATTTGTGA TTTTACATAT ATATCTATAT ATGTTCTCGT 120 .......... .......... .......... .......... .......... .......... 251 GTTAAAAATA CTCGGGATTT AAAATTTATA AACTCGAGTT CTTTATTATA CTACAATTTA 180 .......... .......... .......... .......... .......... .......... 251 TTCGATTTAC AAAATCTAAA TAAAAGTTAC TAATTCGAAT GAACACATAG CATGTATACT 240 .......... .......... .......... .......... .......... .......... 251 AGGATCACCT TTTGATTTAG TTGAACTATT AAGTTTATAC TATGTTTGTC TCGAACAAAT 300 .......... .......... .......... .......... .......... .......... 251 TCGACTAATT TAAATTTGTG CGAACAACAT ATCCTGTAAT TAGTATAGTT CCTCAAATGG 360 .......... .......... .......... .......... .......... .......... 251 TGTCTAAATT GTATATATAC CTCAAGAAAA TCGTTTCTCA AAACTACACT GTATTAACGT 420 .......... .......... .......... .......... .......... .......... 251 ATGACCTATT TAAGGAGAAA TACTCTATCT TTGGTTTCAA GATCTAAAGT AAAATTAGAT 480 .......... .......... .......... .......... .......... .......... 251 ACTAGTTCGA ATGAATACAC AACTTGTATA CTATGTCACA TATTCAGTAT AATTCTATAA 540 .......... .......... .......... .......... .......... .......... 251 GTGCGATCTG GGGAAGGTAG TATGTATGCA TACCTTATGC TCTACCTTCG TGTGGTAGAG 600 .......... .......... .......... .......... .......... .......... 251 AGGATGTTTT CGATAGACGT TTGATTTTTG TGAATTATTG TGAATGCAGA GTCAAGAGCT 660 | |||||||||| .......... .......... .......... .......... .........A GTCAAGAGCT 262 ATTACACAAT ACATAGCTCA CACATATGCT GACAAGGGGA ACCAACTCTT ACCAAATGAC 720 |||||||||| |||||||||| ||||||||| ||||| |||| ||||||| || ||| |||||| ATTACACAAT ACATAGCTCA CACATATGCA GACAAAGGGA ACCAACTTTT ACCCAATGAC 322 CCAAAGAAAA TGGCAATCAT GTATGTATGG ATTGAAGTTG AAGCCCAAAG ATTTGAACCT 780 |||||||||| ||||| |||| || ||||||| || ||||| | ||||||| | ||| || || CCAAAGAAAA TGGCAGTCAT GTCTGTATGG ATGGAAGTAG AAGCCCAGAA ATTCGACCCC 382 GTTGTTTCAA AACTATGCTA TGAGATTGTC ATCAAGCCAT TGTTGGACAT GGTGACTGAT 840 ||| ||||| ||||| | | |||||||||| || |||||| |||||| ||| |||||||||| ATTGGTTCAA AACTAGGGTT TGAGATTGTC ATTAAGCCAA TGTTGGGCAT GGTGACTGAT 442 GATGCAATCG TGGCGGAGAA CGAAGAAAAA CTTAGCAAAC TTCTTGACGT TTATGAATCT 900 |||||| ||| |||| ||||| |||||| ||| || | |||| ||||||| || ||||||||| GATGCAGTCG TGGCAGAGAA CGAAGAGAAA CTCGGGAAAC TTCTTGATGT GTATGAATCT 502 AGACTCAAGG ATTCGAAATA TTTGGGTGGT GATAGTTTTA CCCTAGCTGA T 951 |||||||||| | |||||||| |||||||||| || ||||| | |||||||||| | AGACTCAAGG AATCGAAATA TTTGGGTGGT GAGAGTTTCA CCCTAGCTGA T 553 hqPGS_C06HBa0024L21.1-2+_SGN-E290753+ (2 46,650 951) ******************************************************************************** EST sequence 16 +strand 429 n (File: SGN-E293109+) 1 GCAAGCTGGT GATCACAAAA AGGAACCATT CATTTCTCTA AATCCGCTTG GTCAAGTTCC 61 AGCTTTTGAA GATGGAGATT TAAAGCTTTT TGAGTCAAGA GCTATTACAC AATACATAGC 121 TCACACATAT GCAGACAAAG GGAACCAACT TTTACCCAAT GACCCAAAGA AAATGGCAGT 181 CATGTCTGTA TGGATGGAAG TAGAAGCCCA GAAATTCGAC CCCATTGGTT CAAAACTAGG 241 GTTTGAGATT GTCATTAAGC CAATGCTGGG CATGGCGACT GATGATGCAG TCGTGGCAGA 301 GAACGAAGAG AAACTCGGGA AACTTCTTGA TGTGTATGAA TCTAGACTCA AGGAATCGAA 361 ATATTTGGGT GGTGAGAGTT TCACCCTAGC TGATTTGCAC CACGCCCCGT CTTTGCACTA 421 CTTGTCGGG Predicted gene structure (within gDNA segment 1 to 2082): Exon 1 3 46 ( 44 n); cDNA 48 92 ( 45 n); score: 0.875 Intron 1 47 649 ( 603 n); Pd: 0.000 (s: 0.88), Pa: 0.989 (s: 0.96) Exon 2 650 986 ( 337 n); cDNA 93 429 ( 337 n); score: 0.887 MATCH C06HBa0024L21.1-2+ SGN-E293109+ 0.887 381 0.888 C PGS_C06HBa0024L21.1-2+_SGN-E293109+ (3 46,650 986) Alignment (genomic DNA sequence = upper lines): TTGGTC-AGT TCCTGCTTTT GAAGATGGAG ATCTCAAGCT TTTTGGTAAG TTAAACTTTT 61 |||||| ||| ||| |||||| |||||||||| || | ||||| ||||| TTGGTCAAGT TCCAGCTTTT GAAGATGGAG ATTTAAAGCT TTTTG..... .......... 92 TTTGCACATT CATAATCTAA TATTTGTGAT TTTACATATA TATCTATATA TGTTCTCGTG 121 .......... .......... .......... .......... .......... .......... 92 TTAAAAATAC TCGGGATTTA AAATTTATAA ACTCGAGTTC TTTATTATAC TACAATTTAT 181 .......... .......... .......... .......... .......... .......... 92 TCGATTTACA AAATCTAAAT AAAAGTTACT AATTCGAATG AACACATAGC ATGTATACTA 241 .......... .......... .......... .......... .......... .......... 92 GGATCACCTT TTGATTTAGT TGAACTATTA AGTTTATACT ATGTTTGTCT CGAACAAATT 301 .......... .......... .......... .......... .......... .......... 92 CGACTAATTT AAATTTGTGC GAACAACATA TCCTGTAATT AGTATAGTTC CTCAAATGGT 361 .......... .......... .......... .......... .......... .......... 92 GTCTAAATTG TATATATACC TCAAGAAAAT CGTTTCTCAA AACTACACTG TATTAACGTA 421 .......... .......... .......... .......... .......... .......... 92 TGACCTATTT AAGGAGAAAT ACTCTATCTT TGGTTTCAAG ATCTAAAGTA AAATTAGATA 481 .......... .......... .......... .......... .......... .......... 92 CTAGTTCGAA TGAATACACA ACTTGTATAC TATGTCACAT ATTCAGTATA ATTCTATAAG 541 .......... .......... .......... .......... .......... .......... 92 TGCGATCTGG GGAAGGTAGT ATGTATGCAT ACCTTATGCT CTACCTTCGT GTGGTAGAGA 601 .......... .......... .......... .......... .......... .......... 92 GGATGTTTTC GATAGACGTT TGATTTTTGT GAATTATTGT GAATGCAGAG TCAAGAGCTA 661 || |||||||||| .......... .......... .......... .......... ........AG TCAAGAGCTA 104 TTACACAATA CATAGCTCAC ACATATGCTG ACAAGGGGAA CCAACTCTTA CCAAATGACC 721 |||||||||| |||||||||| |||||||| | |||| ||||| |||||| ||| || ||||||| TTACACAATA CATAGCTCAC ACATATGCAG ACAAAGGGAA CCAACTTTTA CCCAATGACC 164 CAAAGAAAAT GGCAATCATG TATGTATGGA TTGAAGTTGA AGCCCAAAGA TTTGAACCTG 781 |||||||||| |||| ||||| | |||||||| | ||||| || |||||| | | || || || CAAAGAAAAT GGCAGTCATG TCTGTATGGA TGGAAGTAGA AGCCCAGAAA TTCGACCCCA 224 TTGTTTCAAA ACTATGCTAT GAGATTGTCA TCAAGCCATT GTTGGACATG GTGACTGATG 841 ||| |||||| |||| | | | |||||||||| | |||||| | | ||| |||| | |||||||| TTGGTTCAAA ACTAGGGTTT GAGATTGTCA TTAAGCCAAT GCTGGGCATG GCGACTGATG 284 ATGCAATCGT GGCGGAGAAC GAAGAAAAAC TTAGCAAACT TCTTGACGTT TATGAATCTA 901 ||||| |||| ||| |||||| ||||| |||| | | ||||| |||||| || |||||||||| ATGCAGTCGT GGCAGAGAAC GAAGAGAAAC TCGGGAAACT TCTTGATGTG TATGAATCTA 344 GACTCAAGGA TTCGAAATAT TTGGGTGGTG ATAGTTTTAC CCTAGCTGAT TTGAACCACG 961 |||||||||| ||||||||| |||||||||| | ||||| || |||||||||| ||| |||||| GACTCAAGGA ATCGAAATAT TTGGGTGGTG AGAGTTTCAC CCTAGCTGAT TTGCACCACG 404 CCCCGGCTTT GCACTACTTG ATGGG 986 ||||| |||| |||||||||| ||| CCCCGTCTTT GCACTACTTG TCGGG 429 hqPGS_C06HBa0024L21.1-2+_SGN-E293109+ (3 46,650 986) ******************************************************************************** EST sequence 8 +strand 416 n (File: SGN-E337275+) 1 AAGTTCCAGC TTTTGAAGAT GGAGATTTAA AGCTTTTTGA GTCAAGAGCT ATTACACAAT 61 ACATAGCTCA CACATATGCA GACAAAGGGA ACCAACTTTT ACCCAATGAC CCAAAGAAAA 121 TGGCAGTCAT GTCTGTATGG ATGGAAGTAG AAGCCCAGAA ATTCGACCCC ATTGGTTCAA 181 AACTAGGGTT TGAGATTGTC ATTAAGCCAA TGTTGGGCAT GGTGACTGAT GATGCAGTCG 241 TGGCAGAGAA CGAAGAGAAA CTCGGGAAAC TTCTTGATGT GTATGAATCT AGACTCAAGG 301 AATCGAAATA TTTGGGTGGT GAGAGTTTCA CCCTAGCTGA TTTGCACCAC GCCCCGTCTT 361 TGCACTACTT GTCGGGGAGT AAAGTGAAGA GCTTGTTCGA TGCTAGGCCT CATGTT Predicted gene structure (within gDNA segment 1 to 1636): Exon 1 9 46 ( 38 n); cDNA 2 39 ( 38 n); score: 0.921 Intron 1 47 649 ( 603 n); Pd: 0.000 (s: 0), Pa: 0.989 (s: 0.96) Exon 2 650 1026 ( 377 n); cDNA 40 416 ( 377 n); score: 0.897 MATCH C06HBa0024L21.1-2+ SGN-E337275+ 0.897 415 0.998 C PGS_C06HBa0024L21.1-2+_SGN-E337275+ (9 46,650 1026) Alignment (genomic DNA sequence = upper lines): AGTTCCTGCT TTTGAAGATG GAGATCTCAA GCTTTTTGGT AAGTTAAACT TTTTTTGCAC 68 |||||| ||| |||||||||| ||||| | || |||||||| AGTTCCAGCT TTTGAAGATG GAGATTTAAA GCTTTTTG.. .......... .......... 39 ATTCATAATC TAATATTTGT GATTTTACAT ATATATCTAT ATATGTTCTC GTGTTAAAAA 128 .......... .......... .......... .......... .......... .......... 39 TACTCGGGAT TTAAAATTTA TAAACTCGAG TTCTTTATTA TACTACAATT TATTCGATTT 188 .......... .......... .......... .......... .......... .......... 39 ACAAAATCTA AATAAAAGTT ACTAATTCGA ATGAACACAT AGCATGTATA CTAGGATCAC 248 .......... .......... .......... .......... .......... .......... 39 CTTTTGATTT AGTTGAACTA TTAAGTTTAT ACTATGTTTG TCTCGAACAA ATTCGACTAA 308 .......... .......... .......... .......... .......... .......... 39 TTTAAATTTG TGCGAACAAC ATATCCTGTA ATTAGTATAG TTCCTCAAAT GGTGTCTAAA 368 .......... .......... .......... .......... .......... .......... 39 TTGTATATAT ACCTCAAGAA AATCGTTTCT CAAAACTACA CTGTATTAAC GTATGACCTA 428 .......... .......... .......... .......... .......... .......... 39 TTTAAGGAGA AATACTCTAT CTTTGGTTTC AAGATCTAAA GTAAAATTAG ATACTAGTTC 488 .......... .......... .......... .......... .......... .......... 39 GAATGAATAC ACAACTTGTA TACTATGTCA CATATTCAGT ATAATTCTAT AAGTGCGATC 548 .......... .......... .......... .......... .......... .......... 39 TGGGGAAGGT AGTATGTATG CATACCTTAT GCTCTACCTT CGTGTGGTAG AGAGGATGTT 608 .......... .......... .......... .......... .......... .......... 39 TTCGATAGAC GTTTGATTTT TGTGAATTAT TGTGAATGCA GAGTCAAGAG CTATTACACA 668 ||||||||| |||||||||| .......... .......... .......... .......... .AGTCAAGAG CTATTACACA 58 ATACATAGCT CACACATATG CTGACAAGGG GAACCAACTC TTACCAAATG ACCCAAAGAA 728 |||||||||| |||||||||| | ||||| || ||||||||| ||||| |||| |||||||||| ATACATAGCT CACACATATG CAGACAAAGG GAACCAACTT TTACCCAATG ACCCAAAGAA 118 AATGGCAATC ATGTATGTAT GGATTGAAGT TGAAGCCCAA AGATTTGAAC CTGTTGTTTC 788 ||||||| || |||| ||||| |||| ||||| |||||||| | ||| || | | ||| ||| AATGGCAGTC ATGTCTGTAT GGATGGAAGT AGAAGCCCAG AAATTCGACC CCATTGGTTC 178 AAAACTATGC TATGAGATTG TCATCAAGCC ATTGTTGGAC ATGGTGACTG ATGATGCAAT 848 ||||||| | | |||||||| |||| ||||| | |||||| | |||||||||| |||||||| | AAAACTAGGG TTTGAGATTG TCATTAAGCC AATGTTGGGC ATGGTGACTG ATGATGCAGT 238 CGTGGCGGAG AACGAAGAAA AACTTAGCAA ACTTCTTGAC GTTTATGAAT CTAGACTCAA 908 |||||| ||| |||||||| | |||| | || ||||||||| || ||||||| |||||||||| CGTGGCAGAG AACGAAGAGA AACTCGGGAA ACTTCTTGAT GTGTATGAAT CTAGACTCAA 298 GGATTCGAAA TATTTGGGTG GTGATAGTTT TACCCTAGCT GATTTGAACC ACGCCCCGGC 968 ||| |||||| |||||||||| |||| ||||| ||||||||| |||||| ||| |||||||| | GGAATCGAAA TATTTGGGTG GTGAGAGTTT CACCCTAGCT GATTTGCACC ACGCCCCGTC 358 TTTGCACTAC TTGATGGGGA CGAAAGTGAA GAGCTTGTTC AATGCTAGGC CTCATGTT 1026 |||||||||| ||| ||||| |||||||| |||||||||| ||||||||| |||||||| TTTGCACTAC TTGTCGGGGA GTAAAGTGAA GAGCTTGTTC GATGCTAGGC CTCATGTT 416 hqPGS_C06HBa0024L21.1-2+_SGN-E337275+ (9 46,650 1026) ******************************************************************************** EST sequence 10 +strand 541 n (File: SGN-E256779+) 1 AGCTTTTGAA GATGGAGATT TAAAGCTTTT TGAGTCAAGA GCTATGGGAC AATACATAGC 61 TCACACATAT GCAGACAAAG GGAACCAACT TTTACCCAAT GACCCAAAGA AAATGGCAGT 121 CATGTCTGTA TGGATGGAAG TAGAAGCCCA GAAATTCGAC CCCATTGGTT CAAAACTAGG 181 GTTTGAGATT GTCATTAAGC CAATGTTGGG CATGGTGACT GATGATGCAG TCGTGGCAGA 241 GAACGAAGAG AAACTCGGGA AACTTCTTGA TGTGTATGAA TCTAGACTCA AGGAATCGAA 301 ATATTTGGGT GGTGAGAGTT TCACCCTAGC TGATTTGCAC CACGCCCCGT CTTTGCACTA 361 CTTGTCGGGG AGTAAAGTGA AGAGCTTGTT CGATGCTAGG CCTCATGTTA GCGCTTGGGT 421 TGCTGATATT TTGGCTAGGC CAGCTTGGTC TAAGACAATT GAGTTGTCAA AACAGTAAGT 481 TTAGTGGCGG ATGGGTGAGT ATCGCGTTGA AAGGAAGGGG GAACAATATT TGGAAATGGC 541 T Predicted gene structure (within gDNA segment 1 to 2891): Exon 1 16 46 ( 31 n); cDNA 2 32 ( 31 n); score: 0.935 Intron 1 47 649 ( 603 n); Pd: 0.000 (s: 0), Pa: 0.989 (s: 0.90) Exon 2 650 1096 ( 447 n); cDNA 33 479 ( 447 n); score: 0.884 MATCH C06HBa0024L21.1-2+ SGN-E256779+ 0.884 478 0.884 C PGS_C06HBa0024L21.1-2+_SGN-E256779+ (16 46,650 1096) Alignment (genomic DNA sequence = upper lines): GCTTTTGAAG ATGGAGATCT CAAGCTTTTT GGTAAGTTAA ACTTTTTTTG CACATTCATA 75 |||||||||| |||||||| | ||||||||| | GCTTTTGAAG ATGGAGATTT AAAGCTTTTT G......... .......... .......... 32 ATCTAATATT TGTGATTTTA CATATATATC TATATATGTT CTCGTGTTAA AAATACTCGG 135 .......... .......... .......... .......... .......... .......... 32 GATTTAAAAT TTATAAACTC GAGTTCTTTA TTATACTACA ATTTATTCGA TTTACAAAAT 195 .......... .......... .......... .......... .......... .......... 32 CTAAATAAAA GTTACTAATT CGAATGAACA CATAGCATGT ATACTAGGAT CACCTTTTGA 255 .......... .......... .......... .......... .......... .......... 32 TTTAGTTGAA CTATTAAGTT TATACTATGT TTGTCTCGAA CAAATTCGAC TAATTTAAAT 315 .......... .......... .......... .......... .......... .......... 32 TTGTGCGAAC AACATATCCT GTAATTAGTA TAGTTCCTCA AATGGTGTCT AAATTGTATA 375 .......... .......... .......... .......... .......... .......... 32 TATACCTCAA GAAAATCGTT TCTCAAAACT ACACTGTATT AACGTATGAC CTATTTAAGG 435 .......... .......... .......... .......... .......... .......... 32 AGAAATACTC TATCTTTGGT TTCAAGATCT AAAGTAAAAT TAGATACTAG TTCGAATGAA 495 .......... .......... .......... .......... .......... .......... 32 TACACAACTT GTATACTATG TCACATATTC AGTATAATTC TATAAGTGCG ATCTGGGGAA 555 .......... .......... .......... .......... .......... .......... 32 GGTAGTATGT ATGCATACCT TATGCTCTAC CTTCGTGTGG TAGAGAGGAT GTTTTCGATA 615 .......... .......... .......... .......... .......... .......... 32 GACGTTTGAT TTTTGTGAAT TATTGTGAAT GCAGAGTCAA GAGCTATTAC ACAATACATA 675 |||||| ||||||| |||||||||| .......... .......... .......... ....AGTCAA GAGCTATGGG ACAATACATA 58 GCTCACACAT ATGCTGACAA GGGGAACCAA CTCTTACCAA ATGACCCAAA GAAAATGGCA 735 |||||||||| |||| ||||| ||||||||| || ||||| | |||||||||| |||||||||| GCTCACACAT ATGCAGACAA AGGGAACCAA CTTTTACCCA ATGACCCAAA GAAAATGGCA 118 ATCATGTATG TATGGATTGA AGTTGAAGCC CAAAGATTTG AACCTGTTGT TTCAAAACTA 795 |||||| || ||||||| || ||| |||||| || | ||| | | || ||| |||||||||| GTCATGTCTG TATGGATGGA AGTAGAAGCC CAGAAATTCG ACCCCATTGG TTCAAAACTA 178 TGCTATGAGA TTGTCATCAA GCCATTGTTG GACATGGTGA CTGATGATGC AATCGTGGCG 855 | | ||||| ||||||| || |||| ||||| | |||||||| |||||||||| | ||||||| GGGTTTGAGA TTGTCATTAA GCCAATGTTG GGCATGGTGA CTGATGATGC AGTCGTGGCA 238 GAGAACGAAG AAAAACTTAG CAAACTTCTT GACGTTTATG AATCTAGACT CAAGGATTCG 915 |||||||||| | ||||| | ||||||||| || || |||| |||||||||| |||||| ||| GAGAACGAAG AGAAACTCGG GAAACTTCTT GATGTGTATG AATCTAGACT CAAGGAATCG 298 AAATATTTGG GTGGTGATAG TTTTACCCTA GCTGATTTGA ACCACGCCCC GGCTTTGCAC 975 |||||||||| ||||||| || ||| |||||| ||||||||| |||||||||| | |||||||| AAATATTTGG GTGGTGAGAG TTTCACCCTA GCTGATTTGC ACCACGCCCC GTCTTTGCAC 358 TACTTGATGG GGACGAAAGT GAAGAGCTTG TTCAATGCTA GGCCTCATGT TGGTGCTTGG 1035 |||||| || ||| ||||| |||||||||| ||| |||||| |||||||||| | | |||||| TACTTGTCGG GGAGTAAAGT GAAGAGCTTG TTCGATGCTA GGCCTCATGT TAGCGCTTGG 418 GTTGCTAATA TCTTGGCTAG GCCAGCTTGG GCTAAGTCAC TTGAGTTGAC TAAATAGTAA 1095 |||||| ||| | |||||||| |||||||||| ||||| || |||||||| | ||| ||||| GTTGCTGATA TTTTGGCTAG GCCAGCTTGG TCTAAGACAA TTGAGTTGTC AAAACAGTAA 478 G 1096 | G 479 hqPGS_C06HBa0024L21.1-2+_SGN-E256779+ (16 46,650 1096) ******************************************************************************** EST sequence 17 +strand 430 n (File: SGN-E301792+) 1 GCTTTTGAAG ATGGAGATTT AAAGCTTTTT GAGTCAAGAG CTATTACACA ATACATAGCT 61 CACACATATG CAGACAAAGG GAACCAACTT TTACCCAATG ACCCAAAGAA AATGGCAGTC 121 ATGTCTGTAT GGATGGAAGT AGAAGCCCAG AAATTCGACC CCATTGGTTC AAAACTAGGG 181 TTTGAGATTG TCATTAAGCC AATGTTGGGC ATGGTGACTG ATGATGCAGT CGTGGCAGAG 241 AACGAAGAGA AACTCGGGAA ACTTCTTGAT GTGTATGAAT CTAGACTCAA GGAATCGAAA 301 TATTTGGGTG GTGAGAGTTT CACCCTAGCT GATTTGCACC ACGCCCCGTC TTTGCACTAC 361 TTGTCGGGGA GTAAAGTGAA GAGCTTGTTC GATGCTAGGC CTCATGTTAG CGCTTGGGTT 421 GCTGATATTT Predicted gene structure (within gDNA segment 1 to 1856): Exon 1 16 46 ( 31 n); cDNA 1 31 ( 31 n); score: 0.935 Intron 1 47 649 ( 603 n); Pd: 0.000 (s: 0), Pa: 0.989 (s: 0.96) Exon 2 650 1046 ( 397 n); cDNA 32 428 ( 397 n); score: 0.894 MATCH C06HBa0024L21.1-2+ SGN-E301792+ 0.894 428 0.995 C PGS_C06HBa0024L21.1-2+_SGN-E301792+ (16 46,650 1046) Alignment (genomic DNA sequence = upper lines): GCTTTTGAAG ATGGAGATCT CAAGCTTTTT GGTAAGTTAA ACTTTTTTTG CACATTCATA 75 |||||||||| |||||||| | ||||||||| | GCTTTTGAAG ATGGAGATTT AAAGCTTTTT G......... .......... .......... 31 ATCTAATATT TGTGATTTTA CATATATATC TATATATGTT CTCGTGTTAA AAATACTCGG 135 .......... .......... .......... .......... .......... .......... 31 GATTTAAAAT TTATAAACTC GAGTTCTTTA TTATACTACA ATTTATTCGA TTTACAAAAT 195 .......... .......... .......... .......... .......... .......... 31 CTAAATAAAA GTTACTAATT CGAATGAACA CATAGCATGT ATACTAGGAT CACCTTTTGA 255 .......... .......... .......... .......... .......... .......... 31 TTTAGTTGAA CTATTAAGTT TATACTATGT TTGTCTCGAA CAAATTCGAC TAATTTAAAT 315 .......... .......... .......... .......... .......... .......... 31 TTGTGCGAAC AACATATCCT GTAATTAGTA TAGTTCCTCA AATGGTGTCT AAATTGTATA 375 .......... .......... .......... .......... .......... .......... 31 TATACCTCAA GAAAATCGTT TCTCAAAACT ACACTGTATT AACGTATGAC CTATTTAAGG 435 .......... .......... .......... .......... .......... .......... 31 AGAAATACTC TATCTTTGGT TTCAAGATCT AAAGTAAAAT TAGATACTAG TTCGAATGAA 495 .......... .......... .......... .......... .......... .......... 31 TACACAACTT GTATACTATG TCACATATTC AGTATAATTC TATAAGTGCG ATCTGGGGAA 555 .......... .......... .......... .......... .......... .......... 31 GGTAGTATGT ATGCATACCT TATGCTCTAC CTTCGTGTGG TAGAGAGGAT GTTTTCGATA 615 .......... .......... .......... .......... .......... .......... 31 GACGTTTGAT TTTTGTGAAT TATTGTGAAT GCAGAGTCAA GAGCTATTAC ACAATACATA 675 |||||| |||||||||| |||||||||| .......... .......... .......... ....AGTCAA GAGCTATTAC ACAATACATA 57 GCTCACACAT ATGCTGACAA GGGGAACCAA CTCTTACCAA ATGACCCAAA GAAAATGGCA 735 |||||||||| |||| ||||| ||||||||| || ||||| | |||||||||| |||||||||| GCTCACACAT ATGCAGACAA AGGGAACCAA CTTTTACCCA ATGACCCAAA GAAAATGGCA 117 ATCATGTATG TATGGATTGA AGTTGAAGCC CAAAGATTTG AACCTGTTGT TTCAAAACTA 795 |||||| || ||||||| || ||| |||||| || | ||| | | || ||| |||||||||| GTCATGTCTG TATGGATGGA AGTAGAAGCC CAGAAATTCG ACCCCATTGG TTCAAAACTA 177 TGCTATGAGA TTGTCATCAA GCCATTGTTG GACATGGTGA CTGATGATGC AATCGTGGCG 855 | | ||||| ||||||| || |||| ||||| | |||||||| |||||||||| | ||||||| GGGTTTGAGA TTGTCATTAA GCCAATGTTG GGCATGGTGA CTGATGATGC AGTCGTGGCA 237 GAGAACGAAG AAAAACTTAG CAAACTTCTT GACGTTTATG AATCTAGACT CAAGGATTCG 915 |||||||||| | ||||| | ||||||||| || || |||| |||||||||| |||||| ||| GAGAACGAAG AGAAACTCGG GAAACTTCTT GATGTGTATG AATCTAGACT CAAGGAATCG 297 AAATATTTGG GTGGTGATAG TTTTACCCTA GCTGATTTGA ACCACGCCCC GGCTTTGCAC 975 |||||||||| ||||||| || ||| |||||| ||||||||| |||||||||| | |||||||| AAATATTTGG GTGGTGAGAG TTTCACCCTA GCTGATTTGC ACCACGCCCC GTCTTTGCAC 357 TACTTGATGG GGACGAAAGT GAAGAGCTTG TTCAATGCTA GGCCTCATGT TGGTGCTTGG 1035 |||||| || ||| ||||| |||||||||| ||| |||||| |||||||||| | | |||||| TACTTGTCGG GGAGTAAAGT GAAGAGCTTG TTCGATGCTA GGCCTCATGT TAGCGCTTGG 417 GTTGCTAATA T 1046 |||||| ||| | GTTGCTGATA T 428 hqPGS_C06HBa0024L21.1-2+_SGN-E301792+ (16 46,650 1046) ******************************************************************************** EST sequence 4 +strand 678 n (File: SGN-E264641+) 1 GAAGATGGAG ATTTAAAGCT TTTTGAGTCA AGAGCTATTA CACAATACAT AGCTCACACA 61 TATGCAGACA AAGGGAACCA ACTTTTACCC AATGACCCAA AGAAAATGGC AGTCATGTCT 121 GTATGGATGG AAGTAGAAGC CCAGAAATTC GACCCCATTG GTTCAAAACT AGGGTTTGAG 181 ATTGTCATTA AGCCAATGTT GGGCATGGTG ACTGATGATG CAGTCGTGGC AGAGAACGAA 241 GAGAAACTCG GGAAACTTCT TGATGTGTAT GAATCTAGAC TCAAGGAATC GAAATATTTG 301 GGTGGTGAGA GTTTCACCCT AGCTGATTTG CACCACGCCC CGTCTTTGCA CTACTTGTCG 361 GGGAGTAAAG TGAAGAGCTT GTTCGATGCT AGGCCTCATG TTAGCGCTTG GGTTGCTGAT 421 ATTTTGGCTA GGCCAGCTTG GTCTAAGACA ATTGAGTTGT CAAAACAGTA AGTTTAGTGG 481 CGGATGGGTG AGTATCGCGT TGAAAGGAAG GGGGAACAAT AGTTGGAAAT GGCTGCNTAT 541 ACCTCGTAGA CTGAGGAGCA AAATATGGGC TATGTATTAC TAGTAGGNTA ATAAATATAG 601 GCCACAAGTA ACACTCCTTT TGTAACTTTT TGCTTTGTGG TGTGCTCTTT TTTTTCCTCC 661 TATCCTTCAT CCTTGTCT Predicted gene structure (within gDNA segment 1 to 2891): Exon 1 22 46 ( 25 n); cDNA 1 25 ( 25 n); score: 0.920 Intron 1 47 649 ( 603 n); Pd: 0.000 (s: 0), Pa: 0.989 (s: 0.96) Exon 2 650 1096 ( 447 n); cDNA 26 472 ( 447 n); score: 0.890 MATCH C06HBa0024L21.1-2+ SGN-E264641+ 0.890 472 0.696 C PGS_C06HBa0024L21.1-2+_SGN-E264641+ (22 46,650 1096) Alignment (genomic DNA sequence = upper lines): GAAGATGGAG ATCTCAAGCT TTTTGGTAAG TTAAACTTTT TTTGCACATT CATAATCTAA 81 |||||||||| || | ||||| ||||| GAAGATGGAG ATTTAAAGCT TTTTG..... .......... .......... .......... 25 TATTTGTGAT TTTACATATA TATCTATATA TGTTCTCGTG TTAAAAATAC TCGGGATTTA 141 .......... .......... .......... .......... .......... .......... 25 AAATTTATAA ACTCGAGTTC TTTATTATAC TACAATTTAT TCGATTTACA AAATCTAAAT 201 .......... .......... .......... .......... .......... .......... 25 AAAAGTTACT AATTCGAATG AACACATAGC ATGTATACTA GGATCACCTT TTGATTTAGT 261 .......... .......... .......... .......... .......... .......... 25 TGAACTATTA AGTTTATACT ATGTTTGTCT CGAACAAATT CGACTAATTT AAATTTGTGC 321 .......... .......... .......... .......... .......... .......... 25 GAACAACATA TCCTGTAATT AGTATAGTTC CTCAAATGGT GTCTAAATTG TATATATACC 381 .......... .......... .......... .......... .......... .......... 25 TCAAGAAAAT CGTTTCTCAA AACTACACTG TATTAACGTA TGACCTATTT AAGGAGAAAT 441 .......... .......... .......... .......... .......... .......... 25 ACTCTATCTT TGGTTTCAAG ATCTAAAGTA AAATTAGATA CTAGTTCGAA TGAATACACA 501 .......... .......... .......... .......... .......... .......... 25 ACTTGTATAC TATGTCACAT ATTCAGTATA ATTCTATAAG TGCGATCTGG GGAAGGTAGT 561 .......... .......... .......... .......... .......... .......... 25 ATGTATGCAT ACCTTATGCT CTACCTTCGT GTGGTAGAGA GGATGTTTTC GATAGACGTT 621 .......... .......... .......... .......... .......... .......... 25 TGATTTTTGT GAATTATTGT GAATGCAGAG TCAAGAGCTA TTACACAATA CATAGCTCAC 681 || |||||||||| |||||||||| |||||||||| .......... .......... ........AG TCAAGAGCTA TTACACAATA CATAGCTCAC 57 ACATATGCTG ACAAGGGGAA CCAACTCTTA CCAAATGACC CAAAGAAAAT GGCAATCATG 741 |||||||| | |||| ||||| |||||| ||| || ||||||| |||||||||| |||| ||||| ACATATGCAG ACAAAGGGAA CCAACTTTTA CCCAATGACC CAAAGAAAAT GGCAGTCATG 117 TATGTATGGA TTGAAGTTGA AGCCCAAAGA TTTGAACCTG TTGTTTCAAA ACTATGCTAT 801 | |||||||| | ||||| || |||||| | | || || || ||| |||||| |||| | | | TCTGTATGGA TGGAAGTAGA AGCCCAGAAA TTCGACCCCA TTGGTTCAAA ACTAGGGTTT 177 GAGATTGTCA TCAAGCCATT GTTGGACATG GTGACTGATG ATGCAATCGT GGCGGAGAAC 861 |||||||||| | |||||| | ||||| |||| |||||||||| ||||| |||| ||| |||||| GAGATTGTCA TTAAGCCAAT GTTGGGCATG GTGACTGATG ATGCAGTCGT GGCAGAGAAC 237 GAAGAAAAAC TTAGCAAACT TCTTGACGTT TATGAATCTA GACTCAAGGA TTCGAAATAT 921 ||||| |||| | | ||||| |||||| || |||||||||| |||||||||| ||||||||| GAAGAGAAAC TCGGGAAACT TCTTGATGTG TATGAATCTA GACTCAAGGA ATCGAAATAT 297 TTGGGTGGTG ATAGTTTTAC CCTAGCTGAT TTGAACCACG CCCCGGCTTT GCACTACTTG 981 |||||||||| | ||||| || |||||||||| ||| |||||| ||||| |||| |||||||||| TTGGGTGGTG AGAGTTTCAC CCTAGCTGAT TTGCACCACG CCCCGTCTTT GCACTACTTG 357 ATGGGGACGA AAGTGAAGAG CTTGTTCAAT GCTAGGCCTC ATGTTGGTGC TTGGGTTGCT 1041 ||||| | |||||||||| ||||||| || |||||||||| ||||| | || |||||||||| TCGGGGAGTA AAGTGAAGAG CTTGTTCGAT GCTAGGCCTC ATGTTAGCGC TTGGGTTGCT 417 AATATCTTGG CTAGGCCAGC TTGGGCTAAG TCACTTGAGT TGACTAAATA GTAAG 1096 |||| |||| |||||||||| |||| ||||| || |||||| || | ||| | ||||| GATATTTTGG CTAGGCCAGC TTGGTCTAAG ACAATTGAGT TGTCAAAACA GTAAG 472 hqPGS_C06HBa0024L21.1-2+_SGN-E264641+ (22 46,650 1096) ******************************************************************************** EST sequence 3 +strand 434 n (File: SGN-E232940+) 1 GAAGATGGAG ATTTAAAGCT TTTTGAGTCA AGAGCTATTA CACAATACAT AGCTCACACA 61 TATGCAGACA AAGGGAACCA ACTTTTACCC AATGACCCAA AGAAAATGGC AGTCATGTCT 121 GTATGGATGG AAGTAGAAGC CCAGAAATTC GACCCCATTG GTTCAAAACT AGGGTTTGAG 181 ATTGTCATTA AGCCAATGTT GGGCATGGTG ACTGATGATG CAGTCGTGGC AGAGAACGAA 241 GAGAAACTCG GGAAACTTCT TGATGTGTAT GAATCTAGAC TCAAGGAATC GAAATATTTG 301 GGTGGTGAGA GTTTCACCCT AGCTGATTTG CACCACGCCC CGTCTTTGCA CTACTTGTCG 361 GGGAGTAAAG TGAAGAGCTT GTTCGATGCT AGGCCTCATG TTAGCGCTTG GGTTGCTGAT 421 ATTTTGGCTA GGCC Predicted gene structure (within gDNA segment 1 to 1956): Exon 1 22 46 ( 25 n); cDNA 1 25 ( 25 n); score: 0.920 Intron 1 47 649 ( 603 n); Pd: 0.000 (s: 0), Pa: 0.989 (s: 0.96) Exon 2 650 1058 ( 409 n); cDNA 26 434 ( 409 n); score: 0.895 MATCH C06HBa0024L21.1-2+ SGN-E232940+ 0.895 434 1.000 C PGS_C06HBa0024L21.1-2+_SGN-E232940+ (22 46,650 1058) Alignment (genomic DNA sequence = upper lines): GAAGATGGAG ATCTCAAGCT TTTTGGTAAG TTAAACTTTT TTTGCACATT CATAATCTAA 81 |||||||||| || | ||||| ||||| GAAGATGGAG ATTTAAAGCT TTTTG..... .......... .......... .......... 25 TATTTGTGAT TTTACATATA TATCTATATA TGTTCTCGTG TTAAAAATAC TCGGGATTTA 141 .......... .......... .......... .......... .......... .......... 25 AAATTTATAA ACTCGAGTTC TTTATTATAC TACAATTTAT TCGATTTACA AAATCTAAAT 201 .......... .......... .......... .......... .......... .......... 25 AAAAGTTACT AATTCGAATG AACACATAGC ATGTATACTA GGATCACCTT TTGATTTAGT 261 .......... .......... .......... .......... .......... .......... 25 TGAACTATTA AGTTTATACT ATGTTTGTCT CGAACAAATT CGACTAATTT AAATTTGTGC 321 .......... .......... .......... .......... .......... .......... 25 GAACAACATA TCCTGTAATT AGTATAGTTC CTCAAATGGT GTCTAAATTG TATATATACC 381 .......... .......... .......... .......... .......... .......... 25 TCAAGAAAAT CGTTTCTCAA AACTACACTG TATTAACGTA TGACCTATTT AAGGAGAAAT 441 .......... .......... .......... .......... .......... .......... 25 ACTCTATCTT TGGTTTCAAG ATCTAAAGTA AAATTAGATA CTAGTTCGAA TGAATACACA 501 .......... .......... .......... .......... .......... .......... 25 ACTTGTATAC TATGTCACAT ATTCAGTATA ATTCTATAAG TGCGATCTGG GGAAGGTAGT 561 .......... .......... .......... .......... .......... .......... 25 ATGTATGCAT ACCTTATGCT CTACCTTCGT GTGGTAGAGA GGATGTTTTC GATAGACGTT 621 .......... .......... .......... .......... .......... .......... 25 TGATTTTTGT GAATTATTGT GAATGCAGAG TCAAGAGCTA TTACACAATA CATAGCTCAC 681 || |||||||||| |||||||||| |||||||||| .......... .......... ........AG TCAAGAGCTA TTACACAATA CATAGCTCAC 57 ACATATGCTG ACAAGGGGAA CCAACTCTTA CCAAATGACC CAAAGAAAAT GGCAATCATG 741 |||||||| | |||| ||||| |||||| ||| || ||||||| |||||||||| |||| ||||| ACATATGCAG ACAAAGGGAA CCAACTTTTA CCCAATGACC CAAAGAAAAT GGCAGTCATG 117 TATGTATGGA TTGAAGTTGA AGCCCAAAGA TTTGAACCTG TTGTTTCAAA ACTATGCTAT 801 | |||||||| | ||||| || |||||| | | || || || ||| |||||| |||| | | | TCTGTATGGA TGGAAGTAGA AGCCCAGAAA TTCGACCCCA TTGGTTCAAA ACTAGGGTTT 177 GAGATTGTCA TCAAGCCATT GTTGGACATG GTGACTGATG ATGCAATCGT GGCGGAGAAC 861 |||||||||| | |||||| | ||||| |||| |||||||||| ||||| |||| ||| |||||| GAGATTGTCA TTAAGCCAAT GTTGGGCATG GTGACTGATG ATGCAGTCGT GGCAGAGAAC 237 GAAGAAAAAC TTAGCAAACT TCTTGACGTT TATGAATCTA GACTCAAGGA TTCGAAATAT 921 ||||| |||| | | ||||| |||||| || |||||||||| |||||||||| ||||||||| GAAGAGAAAC TCGGGAAACT TCTTGATGTG TATGAATCTA GACTCAAGGA ATCGAAATAT 297 TTGGGTGGTG ATAGTTTTAC CCTAGCTGAT TTGAACCACG CCCCGGCTTT GCACTACTTG 981 |||||||||| | ||||| || |||||||||| ||| |||||| ||||| |||| |||||||||| TTGGGTGGTG AGAGTTTCAC CCTAGCTGAT TTGCACCACG CCCCGTCTTT GCACTACTTG 357 ATGGGGACGA AAGTGAAGAG CTTGTTCAAT GCTAGGCCTC ATGTTGGTGC TTGGGTTGCT 1041 ||||| | |||||||||| ||||||| || |||||||||| ||||| | || |||||||||| TCGGGGAGTA AAGTGAAGAG CTTGTTCGAT GCTAGGCCTC ATGTTAGCGC TTGGGTTGCT 417 AATATCTTGG CTAGGCC 1058 |||| |||| ||||||| GATATTTTGG CTAGGCC 434 hqPGS_C06HBa0024L21.1-2+_SGN-E232940+ (22 46,650 1058) ******************************************************************************** EST sequence 1 +strand 741 n (File: SGN-E212661+) 1 AGATTTAAAG CTTTTTGAGT CAAGAGCTAT TACACAATAC ATAGCTCACA CATATGCAGA 61 CAAAGGGAAC CAACTTTTAC CCAATGACCC AAAGAAAATG GCAGTCATGT CTGTATGGAT 121 GGAAGTAGAA GCCCAGAAAT TCGACCCCAT TGGTTCAAAA CTAGGGTTTG AGATTGTCAT 181 TAAGCCAATG TTGGGCATGG TGACTGATGA TGCAGTCGTG GCAGAGAACG AAGAGAAACT 241 CGGGAAACTT CTTGATGTGT ATGAATCTAG ACTCAAGGAA TCGAAATATT TGGGTGGTGA 301 GAGTTTCACC CTAGCTGATT TGCACCACGC CCCGTCTTTG CACTACTTGT CGGGGAGTAA 361 AGTGAAGAGC TTGTTCGATG CTAGGCCTCA TGTTAGCGCT TGGGTTGCTG ATATTTTGGC 421 TAGGCCAGCT TGGTCTAAGA CAATTGAGTT GTCAAAACAG TAAGTTTAGT GGCGGATGGG 481 TGAGTATCGC GTTGAAAGGA AGGGGGAACA ATAGTTGGAA ATGGCTGCTA ATACCTCGTA 541 GACTGANGAG CAAAATATGG CCTATGTATT ACTAGTAGGT TAATAAATAT AGGCCACAAG 601 TAACACTCCT TTTGTAACCT TTTTGCTTTG TGGTGTGCTC TTTTTTTTCC TTCCTATCCT 661 TCATCCTTGT CTGTGAGTCA AGTGTTTGTT GTATCGTAAG ACGTTCTCTT TTTATTGAAT 721 TTTTGTGTGC GCGTATGCGT A Predicted gene structure (within gDNA segment 1 to 2891): Exon 1 30 46 ( 17 n); cDNA 1 17 ( 17 n); score: 0.882 Intron 1 47 649 ( 603 n); Pd: 0.000 (s: 0), Pa: 0.989 (s: 0.96) Exon 2 650 1096 ( 447 n); cDNA 18 464 ( 447 n); score: 0.890 MATCH C06HBa0024L21.1-2+ SGN-E212661+ 0.890 464 0.626 C PGS_C06HBa0024L21.1-2+_SGN-E212661+ (30 46,650 1096) Alignment (genomic DNA sequence = upper lines): AGATCTCAAG CTTTTTGGTA AGTTAAACTT TTTTTGCACA TTCATAATCT AATATTTGTG 89 |||| | ||| ||||||| AGATTTAAAG CTTTTTG... .......... .......... .......... .......... 17 ATTTTACATA TATATCTATA TATGTTCTCG TGTTAAAAAT ACTCGGGATT TAAAATTTAT 149 .......... .......... .......... .......... .......... .......... 17 AAACTCGAGT TCTTTATTAT ACTACAATTT ATTCGATTTA CAAAATCTAA ATAAAAGTTA 209 .......... .......... .......... .......... .......... .......... 17 CTAATTCGAA TGAACACATA GCATGTATAC TAGGATCACC TTTTGATTTA GTTGAACTAT 269 .......... .......... .......... .......... .......... .......... 17 TAAGTTTATA CTATGTTTGT CTCGAACAAA TTCGACTAAT TTAAATTTGT GCGAACAACA 329 .......... .......... .......... .......... .......... .......... 17 TATCCTGTAA TTAGTATAGT TCCTCAAATG GTGTCTAAAT TGTATATATA CCTCAAGAAA 389 .......... .......... .......... .......... .......... .......... 17 ATCGTTTCTC AAAACTACAC TGTATTAACG TATGACCTAT TTAAGGAGAA ATACTCTATC 449 .......... .......... .......... .......... .......... .......... 17 TTTGGTTTCA AGATCTAAAG TAAAATTAGA TACTAGTTCG AATGAATACA CAACTTGTAT 509 .......... .......... .......... .......... .......... .......... 17 ACTATGTCAC ATATTCAGTA TAATTCTATA AGTGCGATCT GGGGAAGGTA GTATGTATGC 569 .......... .......... .......... .......... .......... .......... 17 ATACCTTATG CTCTACCTTC GTGTGGTAGA GAGGATGTTT TCGATAGACG TTTGATTTTT 629 .......... .......... .......... .......... .......... .......... 17 GTGAATTATT GTGAATGCAG AGTCAAGAGC TATTACACAA TACATAGCTC ACACATATGC 689 |||||||||| |||||||||| |||||||||| |||||||||| .......... .......... AGTCAAGAGC TATTACACAA TACATAGCTC ACACATATGC 57 TGACAAGGGG AACCAACTCT TACCAAATGA CCCAAAGAAA ATGGCAATCA TGTATGTATG 749 ||||| ||| |||||||| | |||| ||||| |||||||||| |||||| ||| ||| |||||| AGACAAAGGG AACCAACTTT TACCCAATGA CCCAAAGAAA ATGGCAGTCA TGTCTGTATG 117 GATTGAAGTT GAAGCCCAAA GATTTGAACC TGTTGTTTCA AAACTATGCT ATGAGATTGT 809 ||| ||||| |||||||| | ||| || || ||| |||| |||||| | | ||||||||| GATGGAAGTA GAAGCCCAGA AATTCGACCC CATTGGTTCA AAACTAGGGT TTGAGATTGT 177 CATCAAGCCA TTGTTGGACA TGGTGACTGA TGATGCAATC GTGGCGGAGA ACGAAGAAAA 869 ||| |||||| |||||| || |||||||||| ||||||| || ||||| |||| ||||||| || CATTAAGCCA ATGTTGGGCA TGGTGACTGA TGATGCAGTC GTGGCAGAGA ACGAAGAGAA 237 ACTTAGCAAA CTTCTTGACG TTTATGAATC TAGACTCAAG GATTCGAAAT ATTTGGGTGG 929 ||| | ||| |||||||| | | |||||||| |||||||||| || ||||||| |||||||||| ACTCGGGAAA CTTCTTGATG TGTATGAATC TAGACTCAAG GAATCGAAAT ATTTGGGTGG 297 TGATAGTTTT ACCCTAGCTG ATTTGAACCA CGCCCCGGCT TTGCACTACT TGATGGGGAC 989 ||| ||||| |||||||||| ||||| |||| ||||||| || |||||||||| || ||||| TGAGAGTTTC ACCCTAGCTG ATTTGCACCA CGCCCCGTCT TTGCACTACT TGTCGGGGAG 357 GAAAGTGAAG AGCTTGTTCA ATGCTAGGCC TCATGTTGGT GCTTGGGTTG CTAATATCTT 1049 ||||||||| ||||||||| |||||||||| ||||||| | |||||||||| || |||| || TAAAGTGAAG AGCTTGTTCG ATGCTAGGCC TCATGTTAGC GCTTGGGTTG CTGATATTTT 417 GGCTAGGCCA GCTTGGGCTA AGTCACTTGA GTTGACTAAA TAGTAAG 1096 |||||||||| |||||| ||| || || |||| |||| | ||| |||||| GGCTAGGCCA GCTTGGTCTA AGACAATTGA GTTGTCAAAA CAGTAAG 464 hqPGS_C06HBa0024L21.1-2+_SGN-E212661+ (650 1096) Total number of EST alignments reported: 17 ________________________________________________________________________________ Predicted gene locations (1) in segment 1 to 2891: PGL 1 (+ strand): 2 1096 AGS-1 (2 46,650 1096) SCR (e 0.935 d 0.000 a 0.989,e 0.890) Exon 1 2 46 ( 45 n); score: 0.935 Intron 1 47 649 ( 603 n); Pd: 0.000 Pa: 0.989 Exon 2 650 1096 ( 447 n); score: 0.890 PGS (2 46,650 1096) SGN-E256887+ PGS (2 46,650 1096) SGN-E259458+ PGS (2 46,650 1096) SGN-E259186+ PGS (2 46,650 997) SGN-E309123+ PGS (2 46,650 988) SGN-E283551+ PGS (2 46,650 987) SGN-E304236+ PGS (2 46,650 981) SGN-E252214+ PGS (2 46,650 978) SGN-E312205+ PGS (2 46,650 959) SGN-E318444+ PGS (2 46,650 951) SGN-E290753+ PGS (3 46,650 986) SGN-E293109+ PGS (9 46,650 1026) SGN-E337275+ PGS (16 46,650 1096) SGN-E256779+ PGS (16 46,650 1046) SGN-E301792+ PGS (22 46,650 1096) SGN-E264641+ PGS (22 46,650 1058) SGN-E232940+ PGS (650 1096) SGN-E212661+ 3-phase translation of AGS-1 (+strand): . . . . . : . 2 TTTGGTCAGTTCCTGCTTTTGAAGATGGAGATCTCAAGCTTTTTG : AGTCAAGAGCTATTA F G Q F L L L K M E I S S F L : S Q E L L L V S S C F - R W R S Q A F - : V K S Y Y W S V P A F E D G D L K L F : E S R A I . . . . . . 665 CACAATACATAGCTCACACATATGCTGACAAGGGGAACCAACTCTTACCAAATGACCCAA H N T - L T H M L T R G T N S Y Q M T Q T I H S S H I C - Q G E P T L T K - P K T Q Y I A H T Y A D K G N Q L L P N D P . . . . . . 725 AGAAAATGGCAATCATGTATGTATGGATTGAAGTTGAAGCCCAAAGATTTGAACCTGTTG R K W Q S C M Y G L K L K P K D L N L L E N G N H V C M D - S - S P K I - T C C K K M A I M Y V W I E V E A Q R F E P V . . . . . . 785 TTTCAAAACTATGCTATGAGATTGTCATCAAGCCATTGTTGGACATGGTGACTGATGATG F Q N Y A M R L S S S H C W T W - L M M F K T M L - D C H Q A I V G H G D - - C V S K L C Y E I V I K P L L D M V T D D . . . . . . 845 CAATCGTGGCGGAGAACGAAGAAAAACTTAGCAAACTTCTTGACGTTTATGAATCTAGAC Q S W R R T K K N L A N F L T F M N L D N R G G E R R K T - Q T S - R L - I - T A I V A E N E E K L S K L L D V Y E S R . . . . . . 905 TCAAGGATTCGAAATATTTGGGTGGTGATAGTTTTACCCTAGCTGATTTGAACCACGCCC S R I R N I W V V I V L P - L I - T T P Q G F E I F G W - - F Y P S - F E P R P L K D S K Y L G G D S F T L A D L N H A . . . . . . 965 CGGCTTTGCACTACTTGATGGGGACGAAAGTGAAGAGCTTGTTCAATGCTAGGCCTCATG R L C T T - W G R K - R A C S M L G L M G F A L L D G D E S E E L V Q C - A S C P A L H Y L M G T K V K S L F N A R P H . . . . . . 1025 TTGGTGCTTGGGTTGCTAATATCTTGGCTAGGCCAGCTTGGGCTAAGTCACTTGAGTTGA L V L G L L I S W L G Q L G L S H L S - W C L G C - Y L G - A S L G - V T - V D V G A W V A N I L A R P A W A K S L E L . . 1085 CTAAATAGTAAG L N S K - I V T K - - Maximal non-overlapping open reading frames (>= 64 codons): >C06HBa0024L21.1-2+_PGL-1_AGS-1_PPS_1 (4 46,650 1092) (frame '0'; 483 bp, 161 residues) 1 WSVPAFEDGD LKLFESRAIT QYIAHTYADK GNQLLPNDPK KMAIMYVWIE VEAQRFEPVV 61 SKLCYEIVIK PLLDMVTDDA IVAENEEKLS KLLDVYESRL KDSKYLGGDS FTLADLNHAP 121 ALHYLMGTKV KSLFNARPHV GAWVANILAR PAWAKSLELT K- ... finished at: Mon Jul 24 23:16:26 2006 ________________________________________________________________________________ Sequence 3: C06HBa0024L21.1-3, from 1 to 6859, both strands analyzed. ... started at: Mon Jul 24 23:16:26 2006 EST library file: /tmp/cxgn-bacpublish-resources-MvEQ8q/sgn_ests; matching gDNA +strand ... ... found all matches, elapsed seconds = 6 ... matches indexed, elapsed seconds = 6 HitsTableSize = 0 EST library file: /tmp/cxgn-bacpublish-resources-MvEQ8q/sgn_ests; matching gDNA -strand ... ... found all matches, elapsed seconds = 5 ... matches indexed, elapsed seconds = 5 HitsTableSize = 0 No significant EST matches were found. ... finished at: Mon Jul 24 23:16:37 2006 ________________________________________________________________________________ Sequence 4: C06HBa0024L21.1-4, from 1 to 9883, both strands analyzed. ... started at: Mon Jul 24 23:16:37 2006 EST library file: /tmp/cxgn-bacpublish-resources-MvEQ8q/sgn_ests; matching gDNA +strand ... ... found all matches, elapsed seconds = 6 ... matches indexed, elapsed seconds = 6 HitsTableSize = 21 EST library file: /tmp/cxgn-bacpublish-resources-MvEQ8q/sgn_ests; matching gDNA -strand ... ... found all matches, elapsed seconds = 6 ... matches indexed, elapsed seconds = 6 HitsTableSize = 37 ******************************************************************************** EST sequence 11 +strand 577 n (File: SGN-E247476+) 1 AAAAAGCTAA GGAGATATGC AAAGAAAAAT CTGTGAATGA TGTTGTAGTT GAGATAGTGG 61 AAGGTGATGC TAGGCATGTC CTTTGTGAAG CTGTAGAGAA ACTTCATGCC TCTGTTTTAG 121 TTGTTGGTTG TCATGGTTAT GGAGTTATAA AGAGGACTGT TTTGGGTAGT GTAAGTGACT 181 ACTGTGCTCA TCATGCCCAC TGCAGTGTGA TGATTGTGAA GAAGCCAAAG ACTAAAGCTT 241 AAATTGTTTC TACTTGGCAT TTGATTTGTT GTGTTGTCCT AGTGAATAAG ATTACAAATA 301 TGTGATCTGT TTCTTCAACT CCAGGAGGAA AGGAAAAGAA AAGAAACTCA TTTGTTTGTG 361 TATTTATTTG ATTTCTGCAC TCAGTATCTA TATATTACAA GGCTGTGGTG GTTGTGTAAC 421 AAAACAAATA CTTTAGGGTC TTGTGTAGTG TTAATCACAA TCTTCATGTA TAAAATAAAA 481 GACTAAATGC AGTGTATGGA GCTCCAAGTT ATCCTCCTCA TAAATATATC AGGTTGTCCA 541 CGAGAATTAT TAGTAGTATA GAAACTTGAT ATACATT Predicted gene structure (within gDNA segment 1 to 2067): Exon 1 68 189 ( 122 n); cDNA 33 154 ( 122 n); score: 1.000 Intron 1 190 1034 ( 845 n); Pd: 0.966 (s: 1.00), Pa: 0.997 (s: 1.00) Exon 2 1035 1457 ( 423 n); cDNA 155 577 ( 423 n); score: 1.000 MATCH C06HBa0024L21.1-4+ SGN-E247476+ 1.000 545 0.945 C PGS_C06HBa0024L21.1-4+_SGN-E247476+ (68 189,1035 1457) Alignment (genomic DNA sequence = upper lines): GTGAATGATG TTGTAGTTGA GATAGTGGAA GGTGATGCTA GGCATGTCCT TTGTGAAGCT 127 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGAATGATG TTGTAGTTGA GATAGTGGAA GGTGATGCTA GGCATGTCCT TTGTGAAGCT 92 GTAGAGAAAC TTCATGCCTC TGTTTTAGTT GTTGGTTGTC ATGGTTATGG AGTTATAAAG 187 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTAGAGAAAC TTCATGCCTC TGTTTTAGTT GTTGGTTGTC ATGGTTATGG AGTTATAAAG 152 AGGTAAATTT AATTTATATA CGTTCACAGT ATAAATAGCT TGTTTATATT TCTAATTAAC 247 || AG........ .......... .......... .......... .......... .......... 154 GAGCAATTCT CGATGGTAAT TCTAGTGTTG TTGATCTTTC CTACTATAAC ATGTTGGTTT 307 .......... .......... .......... .......... .......... .......... 154 CAATTTTTAT CAGGATTAAC ATTTACTATG TTGGTTTTTG GACGATGGCC TTATAGATGA 367 .......... .......... .......... .......... .......... .......... 154 TCTGACCTTA GATTAGATAG AAGAGCATGA AGGTCGAGAA TTAGGGTAGA AAGTTAGTGA 427 .......... .......... .......... .......... .......... .......... 154 ATAGTCGAGC AATTTCTCTT GAAAGAGTGT GGCTCTAGTT GGAGTACCCA TTTTGCTCCC 487 .......... .......... .......... .......... .......... .......... 154 TCTTCTCCTT ATCATTGCTA CTACTAATAT TATTTGTCTT ACTATTTTTT CTTTTCCTTG 547 .......... .......... .......... .......... .......... .......... 154 GCATTTTCAT CAATGCTTCT TCTGTCTTAT ATTTTTCAAA CTTGTTTTCG AAAGATCTTT 607 .......... .......... .......... .......... .......... .......... 154 TTAGCTGAGT GTATCAAAAA ACAATCCCTA TACCTTGCAC AATGTGGGGT TAACGTCTAT 667 .......... .......... .......... .......... .......... .......... 154 ATATTAGGCC CCTTCCCTTC TCTTTTGGAT GAATGGGGTG ATTTAGAAGG TGCTTCCCGA 727 .......... .......... .......... .......... .......... .......... 154 TCTATAGTCC CTCGAAACGA AGGGTTAGGC AGGTAGTATG GGCCCTCTGA CTTCCAGTTA 787 .......... .......... .......... .......... .......... .......... 154 TGTGTTGTGC CGCTCCGGCG AAGAAAATGA AGGGAAGTTG TTCGAGCTTC CGAGTGGACT 847 .......... .......... .......... .......... .......... .......... 154 TACGCTTTAC TCTTACTCTT AGCCTCTTTT CTACCCTCCT AAAGTCCGAC TTGTGAGATC 907 .......... .......... .......... .......... .......... .......... 154 TCATTGGGCA TGTTGGTGTC GTTGTTGTTG ACTTTATAGG TGGTCTGATT GCATATAAAT 967 .......... .......... .......... .......... .......... .......... 154 TTATTTACAC CTTCAATGCT TAGAACAAGA ACTTGTTTTT GTGCTAAACA CATTATTGAT 1027 .......... .......... .......... .......... .......... .......... 154 TGTGCAGGAC TGTTTTGGGT AGTGTAAGTG ACTACTGTGC TCATCATGCC CACTGCAGTG 1087 ||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......GAC TGTTTTGGGT AGTGTAAGTG ACTACTGTGC TCATCATGCC CACTGCAGTG 207 TGATGATTGT GAAGAAGCCA AAGACTAAAG CTTAAATTGT TTCTACTTGG CATTTGATTT 1147 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGATGATTGT GAAGAAGCCA AAGACTAAAG CTTAAATTGT TTCTACTTGG CATTTGATTT 267 GTTGTGTTGT CCTAGTGAAT AAGATTACAA ATATGTGATC TGTTTCTTCA ACTCCAGGAG 1207 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTGTGTTGT CCTAGTGAAT AAGATTACAA ATATGTGATC TGTTTCTTCA ACTCCAGGAG 327 GAAAGGAAAA GAAAAGAAAC TCATTTGTTT GTGTATTTAT TTGATTTCTG CACTCAGTAT 1267 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAAGGAAAA GAAAAGAAAC TCATTTGTTT GTGTATTTAT TTGATTTCTG CACTCAGTAT 387 CTATATATTA CAAGGCTGTG GTGGTTGTGT AACAAAACAA ATACTTTAGG GTCTTGTGTA 1327 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTATATATTA CAAGGCTGTG GTGGTTGTGT AACAAAACAA ATACTTTAGG GTCTTGTGTA 447 GTGTTAATCA CAATCTTCAT GTATAAAATA AAAGACTAAA TGCAGTGTAT GGAGCTCCAA 1387 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGTTAATCA CAATCTTCAT GTATAAAATA AAAGACTAAA TGCAGTGTAT GGAGCTCCAA 507 GTTATCCTCC TCATAAATAT ATCAGGTTGT CCACGAGAAT TATTAGTAGT ATAGAAACTT 1447 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTATCCTCC TCATAAATAT ATCAGGTTGT CCACGAGAAT TATTAGTAGT ATAGAAACTT 567 GATATACATT 1457 |||||||||| GATATACATT 577 hqPGS_C06HBa0024L21.1-4+_SGN-E247476+ (68 189,1035 1457) ******************************************************************************** EST sequence 54 -strand 702 n (File: SGN-E392034-) 1 AAGATAATCA ACATAGTTTT TATGCATTAG AATGGACTTT GGATCATTTT TTTACAAATT 61 ATAATTCTAA TTCTCCTTTT AAACTTGTTT ATTTTTCATG CTAAACCTAC TCCTGCTTCT 121 GTCATTGGTC TTGCTGTTGG TCCTGGGAGT GTGGAAGCTT TTTCAGCCAT AGAGTCTAAT 181 TTAAAGAAAA TTGCTGCAAG GGTTGTGGAA AAAGCTAAGG AGATATGCAA AGAAAAATCT 241 GTGAATGATG TTGTAGTTGA GATAGTGGAA GGTGATGCTA GGCATGTCCT TTGTGAAGCT 301 GTAGAGAAAC TTCATGCCTC TGTTTTAGTT GTTGGTTGTC ATGGTTATGG AGTTATAAAG 361 AGGACTGTTT TGGGTAGTGT AAGTGACTAC TGTGCTCATC ATGCCCACTG CAGTGTGATG 421 ATTGTGAAGA AGCCAAAGAC TAAAGCTTAA ATTGTTTCTA CTTGGCATTT GATTTGTTGT 481 GTTGTCCTAG TGAATAAGAT TACAAATATG TGATCTGTTT CTTCAACTCC AGGAGGAAAG 541 GAAAAGAAAA GAAACTCATT TGTTTGTGTA TTTATTTGAT TTCTGCACTC AGTATCTATA 601 TATTACAAGG CTGTGGTGGT TGTGTAACAA AACAAATACT TTAGGGTCTT GTGTAGTGTT 661 AATCACAATC TTCATGTATA AAATAAAAGA CTAAAAAAAA AA Predicted gene structure (within gDNA segment 1 to 2037): Exon 1 68 189 ( 122 n); cDNA 241 362 ( 122 n); score: 1.000 Intron 1 190 1034 ( 845 n); Pd: 0.966 (s: 1.00), Pa: 0.997 (s: 1.00) Exon 2 1035 1367 ( 333 n); cDNA 363 695 ( 333 n); score: 1.000 MATCH C06HBa0024L21.1-4+ SGN-E392034- 1.000 455 0.648 C PGS_C06HBa0024L21.1-4+_SGN-E392034- (68 189,1035 1367) Alignment (genomic DNA sequence = upper lines): GTGAATGATG TTGTAGTTGA GATAGTGGAA GGTGATGCTA GGCATGTCCT TTGTGAAGCT 127 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGAATGATG TTGTAGTTGA GATAGTGGAA GGTGATGCTA GGCATGTCCT TTGTGAAGCT 300 GTAGAGAAAC TTCATGCCTC TGTTTTAGTT GTTGGTTGTC ATGGTTATGG AGTTATAAAG 187 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTAGAGAAAC TTCATGCCTC TGTTTTAGTT GTTGGTTGTC ATGGTTATGG AGTTATAAAG 360 AGGTAAATTT AATTTATATA CGTTCACAGT ATAAATAGCT TGTTTATATT TCTAATTAAC 247 || AG........ .......... .......... .......... .......... .......... 362 GAGCAATTCT CGATGGTAAT TCTAGTGTTG TTGATCTTTC CTACTATAAC ATGTTGGTTT 307 .......... .......... .......... .......... .......... .......... 362 CAATTTTTAT CAGGATTAAC ATTTACTATG TTGGTTTTTG GACGATGGCC TTATAGATGA 367 .......... .......... .......... .......... .......... .......... 362 TCTGACCTTA GATTAGATAG AAGAGCATGA AGGTCGAGAA TTAGGGTAGA AAGTTAGTGA 427 .......... .......... .......... .......... .......... .......... 362 ATAGTCGAGC AATTTCTCTT GAAAGAGTGT GGCTCTAGTT GGAGTACCCA TTTTGCTCCC 487 .......... .......... .......... .......... .......... .......... 362 TCTTCTCCTT ATCATTGCTA CTACTAATAT TATTTGTCTT ACTATTTTTT CTTTTCCTTG 547 .......... .......... .......... .......... .......... .......... 362 GCATTTTCAT CAATGCTTCT TCTGTCTTAT ATTTTTCAAA CTTGTTTTCG AAAGATCTTT 607 .......... .......... .......... .......... .......... .......... 362 TTAGCTGAGT GTATCAAAAA ACAATCCCTA TACCTTGCAC AATGTGGGGT TAACGTCTAT 667 .......... .......... .......... .......... .......... .......... 362 ATATTAGGCC CCTTCCCTTC TCTTTTGGAT GAATGGGGTG ATTTAGAAGG TGCTTCCCGA 727 .......... .......... .......... .......... .......... .......... 362 TCTATAGTCC CTCGAAACGA AGGGTTAGGC AGGTAGTATG GGCCCTCTGA CTTCCAGTTA 787 .......... .......... .......... .......... .......... .......... 362 TGTGTTGTGC CGCTCCGGCG AAGAAAATGA AGGGAAGTTG TTCGAGCTTC CGAGTGGACT 847 .......... .......... .......... .......... .......... .......... 362 TACGCTTTAC TCTTACTCTT AGCCTCTTTT CTACCCTCCT AAAGTCCGAC TTGTGAGATC 907 .......... .......... .......... .......... .......... .......... 362 TCATTGGGCA TGTTGGTGTC GTTGTTGTTG ACTTTATAGG TGGTCTGATT GCATATAAAT 967 .......... .......... .......... .......... .......... .......... 362 TTATTTACAC CTTCAATGCT TAGAACAAGA ACTTGTTTTT GTGCTAAACA CATTATTGAT 1027 .......... .......... .......... .......... .......... .......... 362 TGTGCAGGAC TGTTTTGGGT AGTGTAAGTG ACTACTGTGC TCATCATGCC CACTGCAGTG 1087 ||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......GAC TGTTTTGGGT AGTGTAAGTG ACTACTGTGC TCATCATGCC CACTGCAGTG 415 TGATGATTGT GAAGAAGCCA AAGACTAAAG CTTAAATTGT TTCTACTTGG CATTTGATTT 1147 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGATGATTGT GAAGAAGCCA AAGACTAAAG CTTAAATTGT TTCTACTTGG CATTTGATTT 475 GTTGTGTTGT CCTAGTGAAT AAGATTACAA ATATGTGATC TGTTTCTTCA ACTCCAGGAG 1207 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTGTGTTGT CCTAGTGAAT AAGATTACAA ATATGTGATC TGTTTCTTCA ACTCCAGGAG 535 GAAAGGAAAA GAAAAGAAAC TCATTTGTTT GTGTATTTAT TTGATTTCTG CACTCAGTAT 1267 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAAGGAAAA GAAAAGAAAC TCATTTGTTT GTGTATTTAT TTGATTTCTG CACTCAGTAT 595 CTATATATTA CAAGGCTGTG GTGGTTGTGT AACAAAACAA ATACTTTAGG GTCTTGTGTA 1327 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTATATATTA CAAGGCTGTG GTGGTTGTGT AACAAAACAA ATACTTTAGG GTCTTGTGTA 655 GTGTTAATCA CAATCTTCAT GTATAAAATA AAAGACTAAA 1367 |||||||||| |||||||||| |||||||||| |||||||||| GTGTTAATCA CAATCTTCAT GTATAAAATA AAAGACTAAA 695 hqPGS_C06HBa0024L21.1-4+_SGN-E392034- (68 189,1035 1367) ******************************************************************************** EST sequence 3 +strand 739 n (File: SGN-E213576+) 1 TCAAATATTT TATTTCATTT CACACACAAA AAAATTGAAT TCAAATTATT GATTAGCAAA 61 AAATGGGAGA GGAAAAATCT GTGATGGTAG TTGGATTAGA AGATAATCAA CATAGTTTTT 121 ATGCATTAGA ATGGACTTTG GATCATTTTT TTACAAATTA TAATTCTAAT TCTCCTTTTA 181 AACTTGTTAT TCTTCATGCT AAACCTACTC CTGCTTCTGT CATTGGTCTT GCTGTTGGTC 241 CTGGGAGTGT GGAAGCTTTT TCAGCCATAG AGTCTAATTT AAAGAAAATT GCTGCAAGGG 301 TTGTGGAAAA AGCTAAGGAG ATATGCAAAG AAAAATCTGT GAATGATGTT GTAGTTGAGA 361 TAGTGGAAGG TGATGCTAGG CATGTCCTTT GTGAAGCTGT AGAGAAACTT CATGCCTCTG 421 TTTTAGTTGT TGGTTGTCAT GGTTATGGAG TTATAAAGAG GACTGTTTTG GGTAGTGTAA 481 GTGACTACTG TGCTCATCAT GCCCACTGCA GTGTGATGAT TGTGAAGAAG CCAAAGACTA 541 AAGCTTAAAT TGTTTCTACT TGGCATTTGA TTTGTTGTGT TGTCCTAGTG AATAAGATTA 601 CAAATATGTG ATCTGTTTCT TCAACTCCAG GAGGAAAGGA AAAGAAAAGA AACTCATTTG 661 TTTGTGTATT TATTTGATTT CTGCACTCAG TATCTATATA TTTACAGGGC TGTGGTGGTT 721 GTGTAACAAA CAAATACTT Predicted gene structure (within gDNA segment 1 to 2003): Exon 1 68 189 ( 122 n); cDNA 339 460 ( 122 n); score: 1.000 Intron 1 190 1034 ( 845 n); Pd: 0.966 (s: 1.00), Pa: 0.997 (s: 1.00) Exon 2 1035 1313 ( 279 n); cDNA 461 739 ( 279 n); score: 0.984 MATCH C06HBa0024L21.1-4+ SGN-E213576+ 0.989 401 0.543 C PGS_C06HBa0024L21.1-4+_SGN-E213576+ (68 189,1035 1313) Alignment (genomic DNA sequence = upper lines): GTGAATGATG TTGTAGTTGA GATAGTGGAA GGTGATGCTA GGCATGTCCT TTGTGAAGCT 127 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGAATGATG TTGTAGTTGA GATAGTGGAA GGTGATGCTA GGCATGTCCT TTGTGAAGCT 398 GTAGAGAAAC TTCATGCCTC TGTTTTAGTT GTTGGTTGTC ATGGTTATGG AGTTATAAAG 187 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTAGAGAAAC TTCATGCCTC TGTTTTAGTT GTTGGTTGTC ATGGTTATGG AGTTATAAAG 458 AGGTAAATTT AATTTATATA CGTTCACAGT ATAAATAGCT TGTTTATATT TCTAATTAAC 247 || AG........ .......... .......... .......... .......... .......... 460 GAGCAATTCT CGATGGTAAT TCTAGTGTTG TTGATCTTTC CTACTATAAC ATGTTGGTTT 307 .......... .......... .......... .......... .......... .......... 460 CAATTTTTAT CAGGATTAAC ATTTACTATG TTGGTTTTTG GACGATGGCC TTATAGATGA 367 .......... .......... .......... .......... .......... .......... 460 TCTGACCTTA GATTAGATAG AAGAGCATGA AGGTCGAGAA TTAGGGTAGA AAGTTAGTGA 427 .......... .......... .......... .......... .......... .......... 460 ATAGTCGAGC AATTTCTCTT GAAAGAGTGT GGCTCTAGTT GGAGTACCCA TTTTGCTCCC 487 .......... .......... .......... .......... .......... .......... 460 TCTTCTCCTT ATCATTGCTA CTACTAATAT TATTTGTCTT ACTATTTTTT CTTTTCCTTG 547 .......... .......... .......... .......... .......... .......... 460 GCATTTTCAT CAATGCTTCT TCTGTCTTAT ATTTTTCAAA CTTGTTTTCG AAAGATCTTT 607 .......... .......... .......... .......... .......... .......... 460 TTAGCTGAGT GTATCAAAAA ACAATCCCTA TACCTTGCAC AATGTGGGGT TAACGTCTAT 667 .......... .......... .......... .......... .......... .......... 460 ATATTAGGCC CCTTCCCTTC TCTTTTGGAT GAATGGGGTG ATTTAGAAGG TGCTTCCCGA 727 .......... .......... .......... .......... .......... .......... 460 TCTATAGTCC CTCGAAACGA AGGGTTAGGC AGGTAGTATG GGCCCTCTGA CTTCCAGTTA 787 .......... .......... .......... .......... .......... .......... 460 TGTGTTGTGC CGCTCCGGCG AAGAAAATGA AGGGAAGTTG TTCGAGCTTC CGAGTGGACT 847 .......... .......... .......... .......... .......... .......... 460 TACGCTTTAC TCTTACTCTT AGCCTCTTTT CTACCCTCCT AAAGTCCGAC TTGTGAGATC 907 .......... .......... .......... .......... .......... .......... 460 TCATTGGGCA TGTTGGTGTC GTTGTTGTTG ACTTTATAGG TGGTCTGATT GCATATAAAT 967 .......... .......... .......... .......... .......... .......... 460 TTATTTACAC CTTCAATGCT TAGAACAAGA ACTTGTTTTT GTGCTAAACA CATTATTGAT 1027 .......... .......... .......... .......... .......... .......... 460 TGTGCAGGAC TGTTTTGGGT AGTGTAAGTG ACTACTGTGC TCATCATGCC CACTGCAGTG 1087 ||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......GAC TGTTTTGGGT AGTGTAAGTG ACTACTGTGC TCATCATGCC CACTGCAGTG 513 TGATGATTGT GAAGAAGCCA AAGACTAAAG CTTAAATTGT TTCTACTTGG CATTTGATTT 1147 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGATGATTGT GAAGAAGCCA AAGACTAAAG CTTAAATTGT TTCTACTTGG CATTTGATTT 573 GTTGTGTTGT CCTAGTGAAT AAGATTACAA ATATGTGATC TGTTTCTTCA ACTCCAGGAG 1207 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTGTGTTGT CCTAGTGAAT AAGATTACAA ATATGTGATC TGTTTCTTCA ACTCCAGGAG 633 GAAAGGAAAA GAAAAGAAAC TCATTTGTTT GTGTATTTAT TTGATTTCTG CACTCAGTAT 1267 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAAGGAAAA GAAAAGAAAC TCATTTGTTT GTGTATTTAT TTGATTTCTG CACTCAGTAT 693 CTATATA-TT ACAAGGCTGT GGTGGTTGTG TAACAAAACA AATACTT 1313 ||||||| || ||| |||||| |||||||||| |||| ||||| ||||||| CTATATATTT ACAGGGCTGT GGTGGTTGTG TAAC-AAACA AATACTT 739 hqPGS_C06HBa0024L21.1-4+_SGN-E213576+ (68 189,1035 1313) ******************************************************************************** EST sequence 21 +strand 623 n (File: SGN-E397751+) 1 GGAGAGGAAA AATCTGTGAT GGTAGTTGGA TTAGAAGATA ATCAACATAG TTTTTATGCA 61 TTAGAATGGA CTTTGGATCA TTTTTTTACA AATTATAATT CTAATTCTCC TTTTAAACTT 121 GTTATTCTTC ATGCTAAACC TACTCCTGCT TCTGTCATTG GTCTTGCTGT TGGTCCTGGG 181 AGTGTGGAAG CTTTTTCAGC CATAGAGTCT AATTTAAAGA AAATTGCTGC AAGGGTTGTG 241 GAAAAAGCTA AGGAGATATG CAAAGAAAAA TCTGTGAATG ATGTTGTAGT TGAGATAGTG 301 GAAGGTGATG CTAGGCATGT CCTTTGTGAA GCTGTAGAGA AACTTCATGC CTCTGTTTTA 361 GTTGTTGGTT GTCATGGTTA TGGAGTTATA AAGAGGACTG TTTTGGGTAG TGTAAGTGAC 421 TACTGTGCTC ATCATGCCCA CTGCAGTGTG ATGATTGTGA AGAAGCCAAA GACTAAAGCT 481 TAAATTGTTT CTACTTGGCA TTTGATTTGT TGTGTTGTCC TAGTGAATAA GATTACAAAT 541 ATGTGATCTG TTTCTTCAAC TCCAGGAGGA AAGGAAAAGA AAAGAAACTC ATTTGTTTGT 601 GTATTTATTT GATTTCTGCA CTC Predicted gene structure (within gDNA segment 1 to 1872): Exon 1 68 189 ( 122 n); cDNA 274 395 ( 122 n); score: 1.000 Intron 1 190 1034 ( 845 n); Pd: 0.966 (s: 1.00), Pa: 0.997 (s: 1.00) Exon 2 1035 1262 ( 228 n); cDNA 396 623 ( 228 n); score: 1.000 MATCH C06HBa0024L21.1-4+ SGN-E397751+ 1.000 350 0.562 C PGS_C06HBa0024L21.1-4+_SGN-E397751+ (68 189,1035 1262) Alignment (genomic DNA sequence = upper lines): GTGAATGATG TTGTAGTTGA GATAGTGGAA GGTGATGCTA GGCATGTCCT TTGTGAAGCT 127 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGAATGATG TTGTAGTTGA GATAGTGGAA GGTGATGCTA GGCATGTCCT TTGTGAAGCT 333 GTAGAGAAAC TTCATGCCTC TGTTTTAGTT GTTGGTTGTC ATGGTTATGG AGTTATAAAG 187 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTAGAGAAAC TTCATGCCTC TGTTTTAGTT GTTGGTTGTC ATGGTTATGG AGTTATAAAG 393 AGGTAAATTT AATTTATATA CGTTCACAGT ATAAATAGCT TGTTTATATT TCTAATTAAC 247 || AG........ .......... .......... .......... .......... .......... 395 GAGCAATTCT CGATGGTAAT TCTAGTGTTG TTGATCTTTC CTACTATAAC ATGTTGGTTT 307 .......... .......... .......... .......... .......... .......... 395 CAATTTTTAT CAGGATTAAC ATTTACTATG TTGGTTTTTG GACGATGGCC TTATAGATGA 367 .......... .......... .......... .......... .......... .......... 395 TCTGACCTTA GATTAGATAG AAGAGCATGA AGGTCGAGAA TTAGGGTAGA AAGTTAGTGA 427 .......... .......... .......... .......... .......... .......... 395 ATAGTCGAGC AATTTCTCTT GAAAGAGTGT GGCTCTAGTT GGAGTACCCA TTTTGCTCCC 487 .......... .......... .......... .......... .......... .......... 395 TCTTCTCCTT ATCATTGCTA CTACTAATAT TATTTGTCTT ACTATTTTTT CTTTTCCTTG 547 .......... .......... .......... .......... .......... .......... 395 GCATTTTCAT CAATGCTTCT TCTGTCTTAT ATTTTTCAAA CTTGTTTTCG AAAGATCTTT 607 .......... .......... .......... .......... .......... .......... 395 TTAGCTGAGT GTATCAAAAA ACAATCCCTA TACCTTGCAC AATGTGGGGT TAACGTCTAT 667 .......... .......... .......... .......... .......... .......... 395 ATATTAGGCC CCTTCCCTTC TCTTTTGGAT GAATGGGGTG ATTTAGAAGG TGCTTCCCGA 727 .......... .......... .......... .......... .......... .......... 395 TCTATAGTCC CTCGAAACGA AGGGTTAGGC AGGTAGTATG GGCCCTCTGA CTTCCAGTTA 787 .......... .......... .......... .......... .......... .......... 395 TGTGTTGTGC CGCTCCGGCG AAGAAAATGA AGGGAAGTTG TTCGAGCTTC CGAGTGGACT 847 .......... .......... .......... .......... .......... .......... 395 TACGCTTTAC TCTTACTCTT AGCCTCTTTT CTACCCTCCT AAAGTCCGAC TTGTGAGATC 907 .......... .......... .......... .......... .......... .......... 395 TCATTGGGCA TGTTGGTGTC GTTGTTGTTG ACTTTATAGG TGGTCTGATT GCATATAAAT 967 .......... .......... .......... .......... .......... .......... 395 TTATTTACAC CTTCAATGCT TAGAACAAGA ACTTGTTTTT GTGCTAAACA CATTATTGAT 1027 .......... .......... .......... .......... .......... .......... 395 TGTGCAGGAC TGTTTTGGGT AGTGTAAGTG ACTACTGTGC TCATCATGCC CACTGCAGTG 1087 ||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......GAC TGTTTTGGGT AGTGTAAGTG ACTACTGTGC TCATCATGCC CACTGCAGTG 448 TGATGATTGT GAAGAAGCCA AAGACTAAAG CTTAAATTGT TTCTACTTGG CATTTGATTT 1147 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGATGATTGT GAAGAAGCCA AAGACTAAAG CTTAAATTGT TTCTACTTGG CATTTGATTT 508 GTTGTGTTGT CCTAGTGAAT AAGATTACAA ATATGTGATC TGTTTCTTCA ACTCCAGGAG 1207 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTGTGTTGT CCTAGTGAAT AAGATTACAA ATATGTGATC TGTTTCTTCA ACTCCAGGAG 568 GAAAGGAAAA GAAAAGAAAC TCATTTGTTT GTGTATTTAT TTGATTTCTG CACTC 1262 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||| GAAAGGAAAA GAAAAGAAAC TCATTTGTTT GTGTATTTAT TTGATTTCTG CACTC 623 hqPGS_C06HBa0024L21.1-4+_SGN-E397751+ (68 189,1035 1262) ******************************************************************************** EST sequence 20 +strand 595 n (File: SGN-E391787+) 1 GGAGAGGAAA AATCTGTGAT GGTAGTTGGA TTAGAAGATA ATCAACATAG TTTTTATGCA 61 TTAGAATGGA CTTTGGATCA TTTTTTTACA AATTATAATT CTAATTCTCC TTTTAAACTT 121 GTTATTCTTC ATGCTAAACC TACTCCTGCT TCTGTCATTG GTCTTGCTGT TGGTCCTGGG 181 AGTGTGGAAG CTTTTTCAGC CATAGAGTCT AATTTAAAGA AAATTGCTGC AAGGGTTGTG 241 GAAAAAGCTA AGGAGATATG CAAAGAAAAA TCTGTGAATG ATGTTGTAGT TGAGATAGTG 301 GAAGGTGATG CTAGGCATGT CCTTTGTGAA GCTGTAGAGA AACTTCATGC CTCTGTTTTA 361 GTTGTTGGTT GTCATGGTTA TGGAGTTATA AAGAGGACTG TTTTGGGTAG TGGGGGTGAC 421 TACTGTGCTC ATCATGCCCA CTGCAGTGTG ATGATTGTGA AGAAGCCAAA GACTAAAGCT 481 TAAATTGTTT CTACTTGGCA TTTGATTTGT TGTGTTGTCC TAGTGAATAA GATACAAATA 541 TGTGATCTGT TTCTTCAACT CCAGGAGGAA AGGAAAAAAA AAGAACCTCA TTTGT Predicted gene structure (within gDNA segment 1 to 2007): Exon 1 68 189 ( 122 n); cDNA 274 395 ( 122 n); score: 1.000 Intron 1 190 1034 ( 845 n); Pd: 0.966 (s: 1.00), Pa: 0.997 (s: 0.94) Exon 2 1035 1235 ( 201 n); cDNA 396 595 ( 200 n); score: 0.970 MATCH C06HBa0024L21.1-4+ SGN-E391787+ 0.981 323 0.543 C PGS_C06HBa0024L21.1-4+_SGN-E391787+ (68 189,1035 1235) Alignment (genomic DNA sequence = upper lines): GTGAATGATG TTGTAGTTGA GATAGTGGAA GGTGATGCTA GGCATGTCCT TTGTGAAGCT 127 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGAATGATG TTGTAGTTGA GATAGTGGAA GGTGATGCTA GGCATGTCCT TTGTGAAGCT 333 GTAGAGAAAC TTCATGCCTC TGTTTTAGTT GTTGGTTGTC ATGGTTATGG AGTTATAAAG 187 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTAGAGAAAC TTCATGCCTC TGTTTTAGTT GTTGGTTGTC ATGGTTATGG AGTTATAAAG 393 AGGTAAATTT AATTTATATA CGTTCACAGT ATAAATAGCT TGTTTATATT TCTAATTAAC 247 || AG........ .......... .......... .......... .......... .......... 395 GAGCAATTCT CGATGGTAAT TCTAGTGTTG TTGATCTTTC CTACTATAAC ATGTTGGTTT 307 .......... .......... .......... .......... .......... .......... 395 CAATTTTTAT CAGGATTAAC ATTTACTATG TTGGTTTTTG GACGATGGCC TTATAGATGA 367 .......... .......... .......... .......... .......... .......... 395 TCTGACCTTA GATTAGATAG AAGAGCATGA AGGTCGAGAA TTAGGGTAGA AAGTTAGTGA 427 .......... .......... .......... .......... .......... .......... 395 ATAGTCGAGC AATTTCTCTT GAAAGAGTGT GGCTCTAGTT GGAGTACCCA TTTTGCTCCC 487 .......... .......... .......... .......... .......... .......... 395 TCTTCTCCTT ATCATTGCTA CTACTAATAT TATTTGTCTT ACTATTTTTT CTTTTCCTTG 547 .......... .......... .......... .......... .......... .......... 395 GCATTTTCAT CAATGCTTCT TCTGTCTTAT ATTTTTCAAA CTTGTTTTCG AAAGATCTTT 607 .......... .......... .......... .......... .......... .......... 395 TTAGCTGAGT GTATCAAAAA ACAATCCCTA TACCTTGCAC AATGTGGGGT TAACGTCTAT 667 .......... .......... .......... .......... .......... .......... 395 ATATTAGGCC CCTTCCCTTC TCTTTTGGAT GAATGGGGTG ATTTAGAAGG TGCTTCCCGA 727 .......... .......... .......... .......... .......... .......... 395 TCTATAGTCC CTCGAAACGA AGGGTTAGGC AGGTAGTATG GGCCCTCTGA CTTCCAGTTA 787 .......... .......... .......... .......... .......... .......... 395 TGTGTTGTGC CGCTCCGGCG AAGAAAATGA AGGGAAGTTG TTCGAGCTTC CGAGTGGACT 847 .......... .......... .......... .......... .......... .......... 395 TACGCTTTAC TCTTACTCTT AGCCTCTTTT CTACCCTCCT AAAGTCCGAC TTGTGAGATC 907 .......... .......... .......... .......... .......... .......... 395 TCATTGGGCA TGTTGGTGTC GTTGTTGTTG ACTTTATAGG TGGTCTGATT GCATATAAAT 967 .......... .......... .......... .......... .......... .......... 395 TTATTTACAC CTTCAATGCT TAGAACAAGA ACTTGTTTTT GTGCTAAACA CATTATTGAT 1027 .......... .......... .......... .......... .......... .......... 395 TGTGCAGGAC TGTTTTGGGT AGTGTAAGTG ACTACTGTGC TCATCATGCC CACTGCAGTG 1087 ||| |||||||||| |||| ||| |||||||||| |||||||||| |||||||||| .......GAC TGTTTTGGGT AGTGGGGGTG ACTACTGTGC TCATCATGCC CACTGCAGTG 448 TGATGATTGT GAAGAAGCCA AAGACTAAAG CTTAAATTGT TTCTACTTGG CATTTGATTT 1147 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGATGATTGT GAAGAAGCCA AAGACTAAAG CTTAAATTGT TTCTACTTGG CATTTGATTT 508 GTTGTGTTGT CCTAGTGAAT AAGATTACAA ATATGTGATC TGTTTCTTCA ACTCCAGGAG 1207 |||||||||| |||||||||| |||| ||||| |||||||||| |||||||||| |||||||||| GTTGTGTTGT CCTAGTGAAT AAGA-TACAA ATATGTGATC TGTTTCTTCA ACTCCAGGAG 567 GAAAGGAAAA GAAAAGAAAC TCATTTGT 1235 |||||||||| ||||||| | |||||||| GAAAGGAAAA AAAAAGAACC TCATTTGT 595 hqPGS_C06HBa0024L21.1-4+_SGN-E391787+ (68 189,1035 1235) ******************************************************************************** EST sequence 14 +strand 582 n (File: SGN-E259407+) 1 AATTGAATTC AAATTATTGA TTAGCAAAAA ATGGGAGAGG AAAAATCTGT GATGGTAGTT 61 GGATTAGAAG ATAATCAACA TAGTTTTTAT GCATTAGAAT GGACTTTGGA TCATTTTTTT 121 ACAAATTATA ATTCTAATTC TCCTTTTAAA CTTGTTATTC TTCATGCTAA ACCTACTCCT 181 GCTTCTGTCA TTGGTCTTGC TGTTGGTCCT GGGAGTGTGG AAGCTTTTTC AGCCATAGAG 241 TCTAATTTAA AGAAAATTGC TGCAAGGGTT GTGGAAAAAG CTAAGGAGAT ATGCAAAGAA 301 AAATCTGTGA ATGATGTTGT AGTTGAGATA GTGGAAGGTG ATGCTAGGCA TGTCCTTTGT 361 GAAGCTGTAG AGAAACTTCA TGCCTCTGTT TTAGTTGTTG GTTGTCATGG TTATGGAGTT 421 ATAAAGAGGA CTGTTTTGGG TAGTGTAAGT GACTACTGTG CTCATCATGC CCACTGCAGT 481 GTGATGATTG TGAAGAAGCC AAAGACTAAA GCTTAAATTG TTTCTACTTG GCATTTGATT 541 TGTTGTGTTG TCCTAGTGAA TAAGATTACA AATATGTGAT CT Predicted gene structure (within gDNA segment 1 to 1798): Exon 1 68 189 ( 122 n); cDNA 307 428 ( 122 n); score: 1.000 Intron 1 190 1034 ( 845 n); Pd: 0.966 (s: 1.00), Pa: 0.997 (s: 1.00) Exon 2 1035 1188 ( 154 n); cDNA 429 582 ( 154 n); score: 1.000 MATCH C06HBa0024L21.1-4+ SGN-E259407+ 1.000 276 0.474 C PGS_C06HBa0024L21.1-4+_SGN-E259407+ (68 189,1035 1188) Alignment (genomic DNA sequence = upper lines): GTGAATGATG TTGTAGTTGA GATAGTGGAA GGTGATGCTA GGCATGTCCT TTGTGAAGCT 127 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGAATGATG TTGTAGTTGA GATAGTGGAA GGTGATGCTA GGCATGTCCT TTGTGAAGCT 366 GTAGAGAAAC TTCATGCCTC TGTTTTAGTT GTTGGTTGTC ATGGTTATGG AGTTATAAAG 187 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTAGAGAAAC TTCATGCCTC TGTTTTAGTT GTTGGTTGTC ATGGTTATGG AGTTATAAAG 426 AGGTAAATTT AATTTATATA CGTTCACAGT ATAAATAGCT TGTTTATATT TCTAATTAAC 247 || AG........ .......... .......... .......... .......... .......... 428 GAGCAATTCT CGATGGTAAT TCTAGTGTTG TTGATCTTTC CTACTATAAC ATGTTGGTTT 307 .......... .......... .......... .......... .......... .......... 428 CAATTTTTAT CAGGATTAAC ATTTACTATG TTGGTTTTTG GACGATGGCC TTATAGATGA 367 .......... .......... .......... .......... .......... .......... 428 TCTGACCTTA GATTAGATAG AAGAGCATGA AGGTCGAGAA TTAGGGTAGA AAGTTAGTGA 427 .......... .......... .......... .......... .......... .......... 428 ATAGTCGAGC AATTTCTCTT GAAAGAGTGT GGCTCTAGTT GGAGTACCCA TTTTGCTCCC 487 .......... .......... .......... .......... .......... .......... 428 TCTTCTCCTT ATCATTGCTA CTACTAATAT TATTTGTCTT ACTATTTTTT CTTTTCCTTG 547 .......... .......... .......... .......... .......... .......... 428 GCATTTTCAT CAATGCTTCT TCTGTCTTAT ATTTTTCAAA CTTGTTTTCG AAAGATCTTT 607 .......... .......... .......... .......... .......... .......... 428 TTAGCTGAGT GTATCAAAAA ACAATCCCTA TACCTTGCAC AATGTGGGGT TAACGTCTAT 667 .......... .......... .......... .......... .......... .......... 428 ATATTAGGCC CCTTCCCTTC TCTTTTGGAT GAATGGGGTG ATTTAGAAGG TGCTTCCCGA 727 .......... .......... .......... .......... .......... .......... 428 TCTATAGTCC CTCGAAACGA AGGGTTAGGC AGGTAGTATG GGCCCTCTGA CTTCCAGTTA 787 .......... .......... .......... .......... .......... .......... 428 TGTGTTGTGC CGCTCCGGCG AAGAAAATGA AGGGAAGTTG TTCGAGCTTC CGAGTGGACT 847 .......... .......... .......... .......... .......... .......... 428 TACGCTTTAC TCTTACTCTT AGCCTCTTTT CTACCCTCCT AAAGTCCGAC TTGTGAGATC 907 .......... .......... .......... .......... .......... .......... 428 TCATTGGGCA TGTTGGTGTC GTTGTTGTTG ACTTTATAGG TGGTCTGATT GCATATAAAT 967 .......... .......... .......... .......... .......... .......... 428 TTATTTACAC CTTCAATGCT TAGAACAAGA ACTTGTTTTT GTGCTAAACA CATTATTGAT 1027 .......... .......... .......... .......... .......... .......... 428 TGTGCAGGAC TGTTTTGGGT AGTGTAAGTG ACTACTGTGC TCATCATGCC CACTGCAGTG 1087 ||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......GAC TGTTTTGGGT AGTGTAAGTG ACTACTGTGC TCATCATGCC CACTGCAGTG 481 TGATGATTGT GAAGAAGCCA AAGACTAAAG CTTAAATTGT TTCTACTTGG CATTTGATTT 1147 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGATGATTGT GAAGAAGCCA AAGACTAAAG CTTAAATTGT TTCTACTTGG CATTTGATTT 541 GTTGTGTTGT CCTAGTGAAT AAGATTACAA ATATGTGATC T 1188 |||||||||| |||||||||| |||||||||| |||||||||| | GTTGTGTTGT CCTAGTGAAT AAGATTACAA ATATGTGATC T 582 hqPGS_C06HBa0024L21.1-4+_SGN-E259407+ (68 189,1035 1188) ******************************************************************************** EST sequence 19 +strand 492 n (File: SGN-E250018+) 1 AAATGGGAGA GGAAAAATCT GTGATGGTAG TTGGATTAGA AGATAATCAA CATAGTTTTT 61 ATGCATTAGA ATGGACTTTG GATCATTTTT TTACAAATTA TAATTCTAAT TCTCCTTTTA 121 AACTTGTTAT TCTTCATGCT AAACCTACTC CTGCTTCTGT CATTGGTCTT GCTGTTGGTC 181 CTGGGAGTGT GGAAGCTTTT TCAGCCATAG AGTCTAATTT AAAGAAAATT GCTGCAAGGG 241 TTGTGGAAAA AGCTAAGGAG ATATGCAAAG AAAAATCTGT GAATGATGTT GTAGTTGAGA 301 TAGTGGAAGG TGATGCTAGG CATGTCCTTT GTGAAGCTGT AGAGAAACTT CATGCCTCTG 361 TTTTAGTTGT TGGTTGTCAT GGTTATGGAG TTATAAAGAG GACTGTTTTG GGTAGTGTAA 421 GTGACTACTG TGCTCATCAT GCCCACTGCA GTGTGATGAT TGTGAAGAAG CCAAAGACTA 481 AAGCTTAAAT TG Predicted gene structure (within gDNA segment 1 to 1736): Exon 1 68 189 ( 122 n); cDNA 279 400 ( 122 n); score: 1.000 Intron 1 190 1034 ( 845 n); Pd: 0.966 (s: 1.00), Pa: 0.997 (s: 1.00) Exon 2 1035 1126 ( 92 n); cDNA 401 492 ( 92 n); score: 1.000 MATCH C06HBa0024L21.1-4+ SGN-E250018+ 1.000 214 0.435 C PGS_C06HBa0024L21.1-4+_SGN-E250018+ (68 189,1035 1126) Alignment (genomic DNA sequence = upper lines): GTGAATGATG TTGTAGTTGA GATAGTGGAA GGTGATGCTA GGCATGTCCT TTGTGAAGCT 127 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGAATGATG TTGTAGTTGA GATAGTGGAA GGTGATGCTA GGCATGTCCT TTGTGAAGCT 338 GTAGAGAAAC TTCATGCCTC TGTTTTAGTT GTTGGTTGTC ATGGTTATGG AGTTATAAAG 187 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTAGAGAAAC TTCATGCCTC TGTTTTAGTT GTTGGTTGTC ATGGTTATGG AGTTATAAAG 398 AGGTAAATTT AATTTATATA CGTTCACAGT ATAAATAGCT TGTTTATATT TCTAATTAAC 247 || AG........ .......... .......... .......... .......... .......... 400 GAGCAATTCT CGATGGTAAT TCTAGTGTTG TTGATCTTTC CTACTATAAC ATGTTGGTTT 307 .......... .......... .......... .......... .......... .......... 400 CAATTTTTAT CAGGATTAAC ATTTACTATG TTGGTTTTTG GACGATGGCC TTATAGATGA 367 .......... .......... .......... .......... .......... .......... 400 TCTGACCTTA GATTAGATAG AAGAGCATGA AGGTCGAGAA TTAGGGTAGA AAGTTAGTGA 427 .......... .......... .......... .......... .......... .......... 400 ATAGTCGAGC AATTTCTCTT GAAAGAGTGT GGCTCTAGTT GGAGTACCCA TTTTGCTCCC 487 .......... .......... .......... .......... .......... .......... 400 TCTTCTCCTT ATCATTGCTA CTACTAATAT TATTTGTCTT ACTATTTTTT CTTTTCCTTG 547 .......... .......... .......... .......... .......... .......... 400 GCATTTTCAT CAATGCTTCT TCTGTCTTAT ATTTTTCAAA CTTGTTTTCG AAAGATCTTT 607 .......... .......... .......... .......... .......... .......... 400 TTAGCTGAGT GTATCAAAAA ACAATCCCTA TACCTTGCAC AATGTGGGGT TAACGTCTAT 667 .......... .......... .......... .......... .......... .......... 400 ATATTAGGCC CCTTCCCTTC TCTTTTGGAT GAATGGGGTG ATTTAGAAGG TGCTTCCCGA 727 .......... .......... .......... .......... .......... .......... 400 TCTATAGTCC CTCGAAACGA AGGGTTAGGC AGGTAGTATG GGCCCTCTGA CTTCCAGTTA 787 .......... .......... .......... .......... .......... .......... 400 TGTGTTGTGC CGCTCCGGCG AAGAAAATGA AGGGAAGTTG TTCGAGCTTC CGAGTGGACT 847 .......... .......... .......... .......... .......... .......... 400 TACGCTTTAC TCTTACTCTT AGCCTCTTTT CTACCCTCCT AAAGTCCGAC TTGTGAGATC 907 .......... .......... .......... .......... .......... .......... 400 TCATTGGGCA TGTTGGTGTC GTTGTTGTTG ACTTTATAGG TGGTCTGATT GCATATAAAT 967 .......... .......... .......... .......... .......... .......... 400 TTATTTACAC CTTCAATGCT TAGAACAAGA ACTTGTTTTT GTGCTAAACA CATTATTGAT 1027 .......... .......... .......... .......... .......... .......... 400 TGTGCAGGAC TGTTTTGGGT AGTGTAAGTG ACTACTGTGC TCATCATGCC CACTGCAGTG 1087 ||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......GAC TGTTTTGGGT AGTGTAAGTG ACTACTGTGC TCATCATGCC CACTGCAGTG 453 TGATGATTGT GAAGAAGCCA AAGACTAAAG CTTAAATTG 1126 |||||||||| |||||||||| |||||||||| ||||||||| TGATGATTGT GAAGAAGCCA AAGACTAAAG CTTAAATTG 492 hqPGS_C06HBa0024L21.1-4+_SGN-E250018+ (68 189,1035 1126) ******************************************************************************** EST sequence 1 +strand 613 n (File: SGN-E251289+) 1 CAAAGTGTAA TCGTAATGGG GGAAAAACCG GTGATGGTGG TGGGGCTGGA TGACAGCGAA 61 TACAGTTTTT ATGCATTAGA GTGGACTTTG GAACACTTGT TTAGATCTTC ACCGCCTCCT 121 TTCAAACTCC TTATCGTTCA CGCCAAACCT ACTGCTACTT CTGCCATCGG CCTCGCTGGT 181 CCTGGGGGTG CCGATGTTTT GCCCTATGTG GAGGCTGATT TGAGGAAGAT CTCTTCAAGG 241 ATAGCCGAAA AAGCTAAGAA GATTTGTTCT GCTAAATCGG TAAACGATGT TGTAGTTGAG 301 ATTGCGGAAG GTGATGCTAG GAGTGTCTTG TGTGATGCAG TGGAGAAGCA TCATGCCTCT 361 ATGTTAGTTG TTGGTAGTCA TGGTTATGGA GTTCTGAAGA GGGCTGTTTT GGGCAGTGTA 421 AGTGACTACT GTGCTCACCA CACTCACTGC AGTGTGATGA TTGTGAAGCG CCCAAAGATC 481 AAGGCTTGAG ATTTGGTTGA TGCTGTGTAT TTATATAATT CCAATAATAA ATAGAGTAGA 541 TTTGGAAATT GGAGTAGCTA GCAATTTTTA CAAGTCTACG CACAAAATTT GTAACAAAAC 601 ATAATAGCTT GGG Predicted gene structure (within gDNA segment 1 to 3161): Exon 1 68 189 ( 122 n); cDNA 280 401 ( 122 n); score: 0.852 Intron 1 190 1034 ( 845 n); Pd: 0.966 (s: 0.90), Pa: 0.997 (s: 0.88) Exon 2 1035 1120 ( 86 n); cDNA 402 487 ( 86 n); score: 0.860 MATCH C06HBa0024L21.1-4+ SGN-E251289+ 0.856 208 0.339 C PGS_C06HBa0024L21.1-4+_SGN-E251289+ (68 189,1035 1120) Alignment (genomic DNA sequence = upper lines): GTGAATGATG TTGTAGTTGA GATAGTGGAA GGTGATGCTA GGCATGTCCT TTGTGAAGCT 127 || || |||| |||||||||| ||| | |||| |||||||||| || |||| | ||||| || GTAAACGATG TTGTAGTTGA GATTGCGGAA GGTGATGCTA GGAGTGTCTT GTGTGATGCA 339 GTAGAGAAAC TTCATGCCTC TGTTTTAGTT GTTGGTTGTC ATGGTTATGG AGTTATAAAG 187 || ||||| | ||||||||| | | |||||| |||||| ||| |||||||||| |||| | ||| GTGGAGAAGC ATCATGCCTC TATGTTAGTT GTTGGTAGTC ATGGTTATGG AGTTCTGAAG 399 AGGTAAATTT AATTTATATA CGTTCACAGT ATAAATAGCT TGTTTATATT TCTAATTAAC 247 || AG........ .......... .......... .......... .......... .......... 401 GAGCAATTCT CGATGGTAAT TCTAGTGTTG TTGATCTTTC CTACTATAAC ATGTTGGTTT 307 .......... .......... .......... .......... .......... .......... 401 CAATTTTTAT CAGGATTAAC ATTTACTATG TTGGTTTTTG GACGATGGCC TTATAGATGA 367 .......... .......... .......... .......... .......... .......... 401 TCTGACCTTA GATTAGATAG AAGAGCATGA AGGTCGAGAA TTAGGGTAGA AAGTTAGTGA 427 .......... .......... .......... .......... .......... .......... 401 ATAGTCGAGC AATTTCTCTT GAAAGAGTGT GGCTCTAGTT GGAGTACCCA TTTTGCTCCC 487 .......... .......... .......... .......... .......... .......... 401 TCTTCTCCTT ATCATTGCTA CTACTAATAT TATTTGTCTT ACTATTTTTT CTTTTCCTTG 547 .......... .......... .......... .......... .......... .......... 401 GCATTTTCAT CAATGCTTCT TCTGTCTTAT ATTTTTCAAA CTTGTTTTCG AAAGATCTTT 607 .......... .......... .......... .......... .......... .......... 401 TTAGCTGAGT GTATCAAAAA ACAATCCCTA TACCTTGCAC AATGTGGGGT TAACGTCTAT 667 .......... .......... .......... .......... .......... .......... 401 ATATTAGGCC CCTTCCCTTC TCTTTTGGAT GAATGGGGTG ATTTAGAAGG TGCTTCCCGA 727 .......... .......... .......... .......... .......... .......... 401 TCTATAGTCC CTCGAAACGA AGGGTTAGGC AGGTAGTATG GGCCCTCTGA CTTCCAGTTA 787 .......... .......... .......... .......... .......... .......... 401 TGTGTTGTGC CGCTCCGGCG AAGAAAATGA AGGGAAGTTG TTCGAGCTTC CGAGTGGACT 847 .......... .......... .......... .......... .......... .......... 401 TACGCTTTAC TCTTACTCTT AGCCTCTTTT CTACCCTCCT AAAGTCCGAC TTGTGAGATC 907 .......... .......... .......... .......... .......... .......... 401 TCATTGGGCA TGTTGGTGTC GTTGTTGTTG ACTTTATAGG TGGTCTGATT GCATATAAAT 967 .......... .......... .......... .......... .......... .......... 401 TTATTTACAC CTTCAATGCT TAGAACAAGA ACTTGTTTTT GTGCTAAACA CATTATTGAT 1027 .......... .......... .......... .......... .......... .......... 401 TGTGCAGGAC TGTTTTGGGT AGTGTAAGTG ACTACTGTGC TCATCATGCC CACTGCAGTG 1087 | | ||||||||| |||||||||| |||||||||| ||| || | |||||||||| .......GGC TGTTTTGGGC AGTGTAAGTG ACTACTGTGC TCACCACACT CACTGCAGTG 454 TGATGATTGT GAAGAAGCCA AAGACTAAAG CTT 1120 |||||||||| |||| ||| |||| || | ||| TGATGATTGT GAAGCGCCCA AAGATCAAGG CTT 487 hqPGS_C06HBa0024L21.1-4+_SGN-E251289+ (68 189,1035 1120) ******************************************************************************** EST sequence 13 +strand 550 n (File: SGN-E276382+) 1 CGGTGATGGT GGTGGGGCTG GATGACAGCG AATACAGTTT TTATGCATTA GAGTGGACTT 61 TGGAACACTT GTTTAGATCT TCACCGCCTC CTTTCAAACT CCTTATCGTT CACGCCAAAC 121 CTACTGCTAC TTCTGCCATC GGCCTCGCTG GTCCTGGGGG TGCCGATGTT TTGCCCTATG 181 TGGAGGCTGA TTTGAGGAAG ATCTCTTCAA GGATAGCCGA AAAAGCTAAG AAGATTTGTT 241 CTGCTAAATC GGTAAACGAT GTTGTAGTTG AGATTGCGGA AGGTGATGCT AGGAGTGTCT 301 TGTGTGATGC AGTGGAGAAG CATCATGCCT CTATGTTAGT TGTTGGTAGT CATGGTTATG 361 GAGTTCTGAA GAGGGCTGTT TTGGGCAGTG TAAGTGACTA CTGTGCTCAC CACACTCACT 421 GCAGTGTGAT GATTGTGAAG CGCCCAAAGA TCAAGGCTTG AGATTTGGTT GATGCTGTGT 481 ATTTATATAA TTCCAATAAT AAATAGAGTA GATTTGGAAA TTGGAGTAGC TAGCAATTTT 541 CACAAGTCTA Predicted gene structure (within gDNA segment 1 to 2811): Exon 1 68 189 ( 122 n); cDNA 252 373 ( 122 n); score: 0.852 Intron 1 190 1034 ( 845 n); Pd: 0.966 (s: 0.90), Pa: 0.997 (s: 0.88) Exon 2 1035 1120 ( 86 n); cDNA 374 459 ( 86 n); score: 0.860 MATCH C06HBa0024L21.1-4+ SGN-E276382+ 0.856 208 0.378 C PGS_C06HBa0024L21.1-4+_SGN-E276382+ (68 189,1035 1120) Alignment (genomic DNA sequence = upper lines): GTGAATGATG TTGTAGTTGA GATAGTGGAA GGTGATGCTA GGCATGTCCT TTGTGAAGCT 127 || || |||| |||||||||| ||| | |||| |||||||||| || |||| | ||||| || GTAAACGATG TTGTAGTTGA GATTGCGGAA GGTGATGCTA GGAGTGTCTT GTGTGATGCA 311 GTAGAGAAAC TTCATGCCTC TGTTTTAGTT GTTGGTTGTC ATGGTTATGG AGTTATAAAG 187 || ||||| | ||||||||| | | |||||| |||||| ||| |||||||||| |||| | ||| GTGGAGAAGC ATCATGCCTC TATGTTAGTT GTTGGTAGTC ATGGTTATGG AGTTCTGAAG 371 AGGTAAATTT AATTTATATA CGTTCACAGT ATAAATAGCT TGTTTATATT TCTAATTAAC 247 || AG........ .......... .......... .......... .......... .......... 373 GAGCAATTCT CGATGGTAAT TCTAGTGTTG TTGATCTTTC CTACTATAAC ATGTTGGTTT 307 .......... .......... .......... .......... .......... .......... 373 CAATTTTTAT CAGGATTAAC ATTTACTATG TTGGTTTTTG GACGATGGCC TTATAGATGA 367 .......... .......... .......... .......... .......... .......... 373 TCTGACCTTA GATTAGATAG AAGAGCATGA AGGTCGAGAA TTAGGGTAGA AAGTTAGTGA 427 .......... .......... .......... .......... .......... .......... 373 ATAGTCGAGC AATTTCTCTT GAAAGAGTGT GGCTCTAGTT GGAGTACCCA TTTTGCTCCC 487 .......... .......... .......... .......... .......... .......... 373 TCTTCTCCTT ATCATTGCTA CTACTAATAT TATTTGTCTT ACTATTTTTT CTTTTCCTTG 547 .......... .......... .......... .......... .......... .......... 373 GCATTTTCAT CAATGCTTCT TCTGTCTTAT ATTTTTCAAA CTTGTTTTCG AAAGATCTTT 607 .......... .......... .......... .......... .......... .......... 373 TTAGCTGAGT GTATCAAAAA ACAATCCCTA TACCTTGCAC AATGTGGGGT TAACGTCTAT 667 .......... .......... .......... .......... .......... .......... 373 ATATTAGGCC CCTTCCCTTC TCTTTTGGAT GAATGGGGTG ATTTAGAAGG TGCTTCCCGA 727 .......... .......... .......... .......... .......... .......... 373 TCTATAGTCC CTCGAAACGA AGGGTTAGGC AGGTAGTATG GGCCCTCTGA CTTCCAGTTA 787 .......... .......... .......... .......... .......... .......... 373 TGTGTTGTGC CGCTCCGGCG AAGAAAATGA AGGGAAGTTG TTCGAGCTTC CGAGTGGACT 847 .......... .......... .......... .......... .......... .......... 373 TACGCTTTAC TCTTACTCTT AGCCTCTTTT CTACCCTCCT AAAGTCCGAC TTGTGAGATC 907 .......... .......... .......... .......... .......... .......... 373 TCATTGGGCA TGTTGGTGTC GTTGTTGTTG ACTTTATAGG TGGTCTGATT GCATATAAAT 967 .......... .......... .......... .......... .......... .......... 373 TTATTTACAC CTTCAATGCT TAGAACAAGA ACTTGTTTTT GTGCTAAACA CATTATTGAT 1027 .......... .......... .......... .......... .......... .......... 373 TGTGCAGGAC TGTTTTGGGT AGTGTAAGTG ACTACTGTGC TCATCATGCC CACTGCAGTG 1087 | | ||||||||| |||||||||| |||||||||| ||| || | |||||||||| .......GGC TGTTTTGGGC AGTGTAAGTG ACTACTGTGC TCACCACACT CACTGCAGTG 426 TGATGATTGT GAAGAAGCCA AAGACTAAAG CTT 1120 |||||||||| |||| ||| |||| || | ||| TGATGATTGT GAAGCGCCCA AAGATCAAGG CTT 459 hqPGS_C06HBa0024L21.1-4+_SGN-E276382+ (68 189,1035 1120) ******************************************************************************** EST sequence 44 -strand 419 n (File: SGN-E393150-) 1 TCAAGGATAG CCGAAAAAGC TAAGAAGATT TGTTCTGCTA AATCGGTAAA CGATGTTGTA 61 GTTGAGATTG CGGAAGGTGA TGCTAGGAGT GTCTTGTGTG ATACAGTGGA GAAGCATCAT 121 GCCTCTATGT TAGTTGTTGG TAGTCATGGT TATGGAGTTC TGAAGAGGGC TGTTTTGGGC 181 AGTGTAAGTG ACTACTGTGC TCACCACACT CACTGCAGTG TGATGATTGT GAAGCGCCCA 241 AAGATCAAGG CTTGAGATTT GGTTGATGCT GTGTATTTAT ATAATTCCAA TAATAAATAG 301 AGTAGATTTG GAAATTGGAG TAGCTAGCAA TTTTCACAAG TCTACGCACA AAATTTGTAA 361 CAAAACATAA TAGCTTGGGG CCGTCTCAAA AGAAAATTAA TAAATCAGAA ACAAAAAAC Predicted gene structure (within gDNA segment 1 to 3551): Exon 1 68 189 ( 122 n); cDNA 46 167 ( 122 n); score: 0.844 Intron 1 190 1034 ( 845 n); Pd: 0.966 (s: 0.90), Pa: 0.997 (s: 0.88) Exon 2 1035 1120 ( 86 n); cDNA 168 253 ( 86 n); score: 0.860 MATCH C06HBa0024L21.1-4+ SGN-E393150- 0.851 208 0.496 C PGS_C06HBa0024L21.1-4+_SGN-E393150- (68 189,1035 1120) Alignment (genomic DNA sequence = upper lines): GTGAATGATG TTGTAGTTGA GATAGTGGAA GGTGATGCTA GGCATGTCCT TTGTGAAGCT 127 || || |||| |||||||||| ||| | |||| |||||||||| || |||| | ||||| | GTAAACGATG TTGTAGTTGA GATTGCGGAA GGTGATGCTA GGAGTGTCTT GTGTGATACA 105 GTAGAGAAAC TTCATGCCTC TGTTTTAGTT GTTGGTTGTC ATGGTTATGG AGTTATAAAG 187 || ||||| | ||||||||| | | |||||| |||||| ||| |||||||||| |||| | ||| GTGGAGAAGC ATCATGCCTC TATGTTAGTT GTTGGTAGTC ATGGTTATGG AGTTCTGAAG 165 AGGTAAATTT AATTTATATA CGTTCACAGT ATAAATAGCT TGTTTATATT TCTAATTAAC 247 || AG........ .......... .......... .......... .......... .......... 167 GAGCAATTCT CGATGGTAAT TCTAGTGTTG TTGATCTTTC CTACTATAAC ATGTTGGTTT 307 .......... .......... .......... .......... .......... .......... 167 CAATTTTTAT CAGGATTAAC ATTTACTATG TTGGTTTTTG GACGATGGCC TTATAGATGA 367 .......... .......... .......... .......... .......... .......... 167 TCTGACCTTA GATTAGATAG AAGAGCATGA AGGTCGAGAA TTAGGGTAGA AAGTTAGTGA 427 .......... .......... .......... .......... .......... .......... 167 ATAGTCGAGC AATTTCTCTT GAAAGAGTGT GGCTCTAGTT GGAGTACCCA TTTTGCTCCC 487 .......... .......... .......... .......... .......... .......... 167 TCTTCTCCTT ATCATTGCTA CTACTAATAT TATTTGTCTT ACTATTTTTT CTTTTCCTTG 547 .......... .......... .......... .......... .......... .......... 167 GCATTTTCAT CAATGCTTCT TCTGTCTTAT ATTTTTCAAA CTTGTTTTCG AAAGATCTTT 607 .......... .......... .......... .......... .......... .......... 167 TTAGCTGAGT GTATCAAAAA ACAATCCCTA TACCTTGCAC AATGTGGGGT TAACGTCTAT 667 .......... .......... .......... .......... .......... .......... 167 ATATTAGGCC CCTTCCCTTC TCTTTTGGAT GAATGGGGTG ATTTAGAAGG TGCTTCCCGA 727 .......... .......... .......... .......... .......... .......... 167 TCTATAGTCC CTCGAAACGA AGGGTTAGGC AGGTAGTATG GGCCCTCTGA CTTCCAGTTA 787 .......... .......... .......... .......... .......... .......... 167 TGTGTTGTGC CGCTCCGGCG AAGAAAATGA AGGGAAGTTG TTCGAGCTTC CGAGTGGACT 847 .......... .......... .......... .......... .......... .......... 167 TACGCTTTAC TCTTACTCTT AGCCTCTTTT CTACCCTCCT AAAGTCCGAC TTGTGAGATC 907 .......... .......... .......... .......... .......... .......... 167 TCATTGGGCA TGTTGGTGTC GTTGTTGTTG ACTTTATAGG TGGTCTGATT GCATATAAAT 967 .......... .......... .......... .......... .......... .......... 167 TTATTTACAC CTTCAATGCT TAGAACAAGA ACTTGTTTTT GTGCTAAACA CATTATTGAT 1027 .......... .......... .......... .......... .......... .......... 167 TGTGCAGGAC TGTTTTGGGT AGTGTAAGTG ACTACTGTGC TCATCATGCC CACTGCAGTG 1087 | | ||||||||| |||||||||| |||||||||| ||| || | |||||||||| .......GGC TGTTTTGGGC AGTGTAAGTG ACTACTGTGC TCACCACACT CACTGCAGTG 220 TGATGATTGT GAAGAAGCCA AAGACTAAAG CTT 1120 |||||||||| |||| ||| |||| || | ||| TGATGATTGT GAAGCGCCCA AAGATCAAGG CTT 253 hqPGS_C06HBa0024L21.1-4+_SGN-E393150- (68 189,1035 1120) ******************************************************************************** EST sequence 52 -strand 385 n (File: SGN-E219441-) 1 ATCGGTAAAC GATGTTGTAG TTGAGATTGC GGAAGGTGAT GCTAGGAGTG TCTTGTGTGA 61 TGCAGTGGAG AAGCATCATG CCTCTATGTT AGTTGTTGGT AGTCATGGTT ATGGAGTTCT 121 GAAGAGGGCT GTTTTGGGCA GTGTAAGTGA CTACTGTGCT CACCACACTC ACTGCAGTGT 181 GATGATTGTG AAGCGCCCAA AGATCAAGGC TTGAGATTTG GTTGATGCTG TGTATTTATA 241 TAATTCCAAT AATAAATAGA GTAGATTTGG AAATTGGAGT AGCTAGCAAT TTTCACAAGT 301 CTACGCACAA AATTTGTAAC AAAACATAAT AGCTTGGGGC CGTCTCAAAA GAAAATTAGT 361 AAATCAGACC AAAAAAAAAA AAAAA Predicted gene structure (within gDNA segment 1 to 3621): Exon 1 68 189 ( 122 n); cDNA 5 126 ( 122 n); score: 0.852 Intron 1 190 1034 ( 845 n); Pd: 0.966 (s: 0.90), Pa: 0.997 (s: 0.88) Exon 2 1035 1120 ( 86 n); cDNA 127 212 ( 86 n); score: 0.860 PPA cDNA 371 385 MATCH C06HBa0024L21.1-4+ SGN-E219441- 0.856 208 0.540 C PGS_C06HBa0024L21.1-4+_SGN-E219441- (68 189,1035 1120) Alignment (genomic DNA sequence = upper lines): GTGAATGATG TTGTAGTTGA GATAGTGGAA GGTGATGCTA GGCATGTCCT TTGTGAAGCT 127 || || |||| |||||||||| ||| | |||| |||||||||| || |||| | ||||| || GTAAACGATG TTGTAGTTGA GATTGCGGAA GGTGATGCTA GGAGTGTCTT GTGTGATGCA 64 GTAGAGAAAC TTCATGCCTC TGTTTTAGTT GTTGGTTGTC ATGGTTATGG AGTTATAAAG 187 || ||||| | ||||||||| | | |||||| |||||| ||| |||||||||| |||| | ||| GTGGAGAAGC ATCATGCCTC TATGTTAGTT GTTGGTAGTC ATGGTTATGG AGTTCTGAAG 124 AGGTAAATTT AATTTATATA CGTTCACAGT ATAAATAGCT TGTTTATATT TCTAATTAAC 247 || AG........ .......... .......... .......... .......... .......... 126 GAGCAATTCT CGATGGTAAT TCTAGTGTTG TTGATCTTTC CTACTATAAC ATGTTGGTTT 307 .......... .......... .......... .......... .......... .......... 126 CAATTTTTAT CAGGATTAAC ATTTACTATG TTGGTTTTTG GACGATGGCC TTATAGATGA 367 .......... .......... .......... .......... .......... .......... 126 TCTGACCTTA GATTAGATAG AAGAGCATGA AGGTCGAGAA TTAGGGTAGA AAGTTAGTGA 427 .......... .......... .......... .......... .......... .......... 126 ATAGTCGAGC AATTTCTCTT GAAAGAGTGT GGCTCTAGTT GGAGTACCCA TTTTGCTCCC 487 .......... .......... .......... .......... .......... .......... 126 TCTTCTCCTT ATCATTGCTA CTACTAATAT TATTTGTCTT ACTATTTTTT CTTTTCCTTG 547 .......... .......... .......... .......... .......... .......... 126 GCATTTTCAT CAATGCTTCT TCTGTCTTAT ATTTTTCAAA CTTGTTTTCG AAAGATCTTT 607 .......... .......... .......... .......... .......... .......... 126 TTAGCTGAGT GTATCAAAAA ACAATCCCTA TACCTTGCAC AATGTGGGGT TAACGTCTAT 667 .......... .......... .......... .......... .......... .......... 126 ATATTAGGCC CCTTCCCTTC TCTTTTGGAT GAATGGGGTG ATTTAGAAGG TGCTTCCCGA 727 .......... .......... .......... .......... .......... .......... 126 TCTATAGTCC CTCGAAACGA AGGGTTAGGC AGGTAGTATG GGCCCTCTGA CTTCCAGTTA 787 .......... .......... .......... .......... .......... .......... 126 TGTGTTGTGC CGCTCCGGCG AAGAAAATGA AGGGAAGTTG TTCGAGCTTC CGAGTGGACT 847 .......... .......... .......... .......... .......... .......... 126 TACGCTTTAC TCTTACTCTT AGCCTCTTTT CTACCCTCCT AAAGTCCGAC TTGTGAGATC 907 .......... .......... .......... .......... .......... .......... 126 TCATTGGGCA TGTTGGTGTC GTTGTTGTTG ACTTTATAGG TGGTCTGATT GCATATAAAT 967 .......... .......... .......... .......... .......... .......... 126 TTATTTACAC CTTCAATGCT TAGAACAAGA ACTTGTTTTT GTGCTAAACA CATTATTGAT 1027 .......... .......... .......... .......... .......... .......... 126 TGTGCAGGAC TGTTTTGGGT AGTGTAAGTG ACTACTGTGC TCATCATGCC CACTGCAGTG 1087 | | ||||||||| |||||||||| |||||||||| ||| || | |||||||||| .......GGC TGTTTTGGGC AGTGTAAGTG ACTACTGTGC TCACCACACT CACTGCAGTG 179 TGATGATTGT GAAGAAGCCA AAGACTAAAG CTT 1120 |||||||||| |||| ||| |||| || | ||| TGATGATTGT GAAGCGCCCA AAGATCAAGG CTT 212 hqPGS_C06HBa0024L21.1-4+_SGN-E219441- (68 189,1035 1120) ******************************************************************************** EST sequence 15 +strand 429 n (File: SGN-E276224+) 1 GGTGGGGCTG TTTGACAGCG AATACTTTTT TTATGCATTA GAGTGGACTT TGGAACACTT 61 GTTTAGATCT TCACCGCCTC CTTTCAAACT CCTTATCGTT CACGCCAAAC CTACTGCTAC 121 TTCTGCCATC GGCCTCGCTG GTCCTGGGGG TGCCGATGTT TTGCCCTATG TGGAGGCTGA 181 TTTGAGGAAG ATCTCTTCAA GGATAGCCGA AAAAGCTAAG AAGATTTGTT CTGCTAAATC 241 GGTAAACGAT GTTGTAGTTG AGATTGCGGA AGGTGATGCT AGGAGTGTCT TGTGTGATGC 301 AGTGGAGAAG CATCATGCCT CTATGTTAGT TGTTGGTAGT CATGGTTATG GAGTTCTGAA 361 GAGGGCTGTT TTGGGCAGTG TAAGTGACTA CTGTGCTCAC CACACTCACT GCAGTGTGAT 421 GATTGTGAA Predicted gene structure (within gDNA segment 1 to 1710): Exon 1 68 189 ( 122 n); cDNA 242 363 ( 122 n); score: 0.852 Intron 1 190 1034 ( 845 n); Pd: 0.966 (s: 0.90), Pa: 0.997 (s: 0.88) Exon 2 1035 1100 ( 66 n); cDNA 364 429 ( 66 n); score: 0.909 MATCH C06HBa0024L21.1-4+ SGN-E276224+ 0.872 188 0.438 C PGS_C06HBa0024L21.1-4+_SGN-E276224+ (68 189,1035 1100) Alignment (genomic DNA sequence = upper lines): GTGAATGATG TTGTAGTTGA GATAGTGGAA GGTGATGCTA GGCATGTCCT TTGTGAAGCT 127 || || |||| |||||||||| ||| | |||| |||||||||| || |||| | ||||| || GTAAACGATG TTGTAGTTGA GATTGCGGAA GGTGATGCTA GGAGTGTCTT GTGTGATGCA 301 GTAGAGAAAC TTCATGCCTC TGTTTTAGTT GTTGGTTGTC ATGGTTATGG AGTTATAAAG 187 || ||||| | ||||||||| | | |||||| |||||| ||| |||||||||| |||| | ||| GTGGAGAAGC ATCATGCCTC TATGTTAGTT GTTGGTAGTC ATGGTTATGG AGTTCTGAAG 361 AGGTAAATTT AATTTATATA CGTTCACAGT ATAAATAGCT TGTTTATATT TCTAATTAAC 247 || AG........ .......... .......... .......... .......... .......... 363 GAGCAATTCT CGATGGTAAT TCTAGTGTTG TTGATCTTTC CTACTATAAC ATGTTGGTTT 307 .......... .......... .......... .......... .......... .......... 363 CAATTTTTAT CAGGATTAAC ATTTACTATG TTGGTTTTTG GACGATGGCC TTATAGATGA 367 .......... .......... .......... .......... .......... .......... 363 TCTGACCTTA GATTAGATAG AAGAGCATGA AGGTCGAGAA TTAGGGTAGA AAGTTAGTGA 427 .......... .......... .......... .......... .......... .......... 363 ATAGTCGAGC AATTTCTCTT GAAAGAGTGT GGCTCTAGTT GGAGTACCCA TTTTGCTCCC 487 .......... .......... .......... .......... .......... .......... 363 TCTTCTCCTT ATCATTGCTA CTACTAATAT TATTTGTCTT ACTATTTTTT CTTTTCCTTG 547 .......... .......... .......... .......... .......... .......... 363 GCATTTTCAT CAATGCTTCT TCTGTCTTAT ATTTTTCAAA CTTGTTTTCG AAAGATCTTT 607 .......... .......... .......... .......... .......... .......... 363 TTAGCTGAGT GTATCAAAAA ACAATCCCTA TACCTTGCAC AATGTGGGGT TAACGTCTAT 667 .......... .......... .......... .......... .......... .......... 363 ATATTAGGCC CCTTCCCTTC TCTTTTGGAT GAATGGGGTG ATTTAGAAGG TGCTTCCCGA 727 .......... .......... .......... .......... .......... .......... 363 TCTATAGTCC CTCGAAACGA AGGGTTAGGC AGGTAGTATG GGCCCTCTGA CTTCCAGTTA 787 .......... .......... .......... .......... .......... .......... 363 TGTGTTGTGC CGCTCCGGCG AAGAAAATGA AGGGAAGTTG TTCGAGCTTC CGAGTGGACT 847 .......... .......... .......... .......... .......... .......... 363 TACGCTTTAC TCTTACTCTT AGCCTCTTTT CTACCCTCCT AAAGTCCGAC TTGTGAGATC 907 .......... .......... .......... .......... .......... .......... 363 TCATTGGGCA TGTTGGTGTC GTTGTTGTTG ACTTTATAGG TGGTCTGATT GCATATAAAT 967 .......... .......... .......... .......... .......... .......... 363 TTATTTACAC CTTCAATGCT TAGAACAAGA ACTTGTTTTT GTGCTAAACA CATTATTGAT 1027 .......... .......... .......... .......... .......... .......... 363 TGTGCAGGAC TGTTTTGGGT AGTGTAAGTG ACTACTGTGC TCATCATGCC CACTGCAGTG 1087 | | ||||||||| |||||||||| |||||||||| ||| || | |||||||||| .......GGC TGTTTTGGGC AGTGTAAGTG ACTACTGTGC TCACCACACT CACTGCAGTG 416 TGATGATTGT GAA 1100 |||||||||| ||| TGATGATTGT GAA 429 hqPGS_C06HBa0024L21.1-4+_SGN-E276224+ (68 189,1035 1100) ******************************************************************************** EST sequence 16 +strand 457 n (File: SGN-E247389+) 1 GAGAGGAAAA ATCTGTGATG GTAGTTGGAT TAGAAGATAA TCAACATAGT TTTTATGCAT 61 TAGAATGGAC TTTGGATCAT TTTTTTACAA ATTATAATTC TAATTCTCCT TTTAAACTTG 121 TTATTCTTCA TGCTAAACCT ACTCCTGCTT CTGTCATTGG TCTTGCTGTT GGTCCTGGGA 181 GTGTGGAAGC TTTTTCAGCC ATAGAGTCTA ATTTAAAGAA AATTGCTGCA AGGGTTGTGG 241 AAAAAGCTAA GGAGATATGC AAAGAAAAAT CTGTGAATGA TGTTGTAGTT GAGATAGTGG 301 AAGGTGATGC TAGGCATGTC CTTTGTGAAG CTGTAGAGAA ACTTCATGCC TCTGTTTTAG 361 TTGTTGGTTG TCATGGTTAT GGAGTTATAA AGAGGACTGT TTTGGGTAGT GTAAGTGACT 421 ACTGTGCTCA TCATGCCCAC TGCAGTGTGA TGATTGT Predicted gene structure (within gDNA segment 1 to 1707): Exon 1 68 189 ( 122 n); cDNA 273 394 ( 122 n); score: 1.000 Intron 1 190 1034 ( 845 n); Pd: 0.966 (s: 1.00), Pa: 0.997 (s: 1.00) Exon 2 1035 1097 ( 63 n); cDNA 395 457 ( 63 n); score: 1.000 MATCH C06HBa0024L21.1-4+ SGN-E247389+ 1.000 185 0.405 C PGS_C06HBa0024L21.1-4+_SGN-E247389+ (68 189,1035 1097) Alignment (genomic DNA sequence = upper lines): GTGAATGATG TTGTAGTTGA GATAGTGGAA GGTGATGCTA GGCATGTCCT TTGTGAAGCT 127 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGAATGATG TTGTAGTTGA GATAGTGGAA GGTGATGCTA GGCATGTCCT TTGTGAAGCT 332 GTAGAGAAAC TTCATGCCTC TGTTTTAGTT GTTGGTTGTC ATGGTTATGG AGTTATAAAG 187 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTAGAGAAAC TTCATGCCTC TGTTTTAGTT GTTGGTTGTC ATGGTTATGG AGTTATAAAG 392 AGGTAAATTT AATTTATATA CGTTCACAGT ATAAATAGCT TGTTTATATT TCTAATTAAC 247 || AG........ .......... .......... .......... .......... .......... 394 GAGCAATTCT CGATGGTAAT TCTAGTGTTG TTGATCTTTC CTACTATAAC ATGTTGGTTT 307 .......... .......... .......... .......... .......... .......... 394 CAATTTTTAT CAGGATTAAC ATTTACTATG TTGGTTTTTG GACGATGGCC TTATAGATGA 367 .......... .......... .......... .......... .......... .......... 394 TCTGACCTTA GATTAGATAG AAGAGCATGA AGGTCGAGAA TTAGGGTAGA AAGTTAGTGA 427 .......... .......... .......... .......... .......... .......... 394 ATAGTCGAGC AATTTCTCTT GAAAGAGTGT GGCTCTAGTT GGAGTACCCA TTTTGCTCCC 487 .......... .......... .......... .......... .......... .......... 394 TCTTCTCCTT ATCATTGCTA CTACTAATAT TATTTGTCTT ACTATTTTTT CTTTTCCTTG 547 .......... .......... .......... .......... .......... .......... 394 GCATTTTCAT CAATGCTTCT TCTGTCTTAT ATTTTTCAAA CTTGTTTTCG AAAGATCTTT 607 .......... .......... .......... .......... .......... .......... 394 TTAGCTGAGT GTATCAAAAA ACAATCCCTA TACCTTGCAC AATGTGGGGT TAACGTCTAT 667 .......... .......... .......... .......... .......... .......... 394 ATATTAGGCC CCTTCCCTTC TCTTTTGGAT GAATGGGGTG ATTTAGAAGG TGCTTCCCGA 727 .......... .......... .......... .......... .......... .......... 394 TCTATAGTCC CTCGAAACGA AGGGTTAGGC AGGTAGTATG GGCCCTCTGA CTTCCAGTTA 787 .......... .......... .......... .......... .......... .......... 394 TGTGTTGTGC CGCTCCGGCG AAGAAAATGA AGGGAAGTTG TTCGAGCTTC CGAGTGGACT 847 .......... .......... .......... .......... .......... .......... 394 TACGCTTTAC TCTTACTCTT AGCCTCTTTT CTACCCTCCT AAAGTCCGAC TTGTGAGATC 907 .......... .......... .......... .......... .......... .......... 394 TCATTGGGCA TGTTGGTGTC GTTGTTGTTG ACTTTATAGG TGGTCTGATT GCATATAAAT 967 .......... .......... .......... .......... .......... .......... 394 TTATTTACAC CTTCAATGCT TAGAACAAGA ACTTGTTTTT GTGCTAAACA CATTATTGAT 1027 .......... .......... .......... .......... .......... .......... 394 TGTGCAGGAC TGTTTTGGGT AGTGTAAGTG ACTACTGTGC TCATCATGCC CACTGCAGTG 1087 ||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......GAC TGTTTTGGGT AGTGTAAGTG ACTACTGTGC TCATCATGCC CACTGCAGTG 447 TGATGATTGT 1097 |||||||||| TGATGATTGT 457 hqPGS_C06HBa0024L21.1-4+_SGN-E247389+ (68 189,1035 1097) ******************************************************************************** EST sequence 12 +strand 422 n (File: SGN-E259159+) 1 TGCAGGGCTG GATGACAGCG AATACAGTTT TTATGCATTA GAGTGGACTT TGGAACACTT 61 GTTTAGATCT TCACCGCCTC CTTTCAAACT CCTTATCGTT CACGCCAAAC CTACTGCTAC 121 TTCTGCCATC GGCCTCGCTG GTCCTGGGGG TGCCGATGTT TTGCCCTATG TGGAAGCTGA 181 TTTGAGGAAG ATCTCTTCAA GGATAGCCGA AAAAGCTAAG AAGATTTGTT CTGCTAAATC 241 GGTAAACGAT GTTGTAGTTG AGATTGCGGA AGGTGATGCT AGGAGTGTCT TGTGTGATGC 301 AGTGGAGAAG CATCATGCCT CTATGTTAGT TGTTGGTAGT CATGGTTATG GAGTTCTGAA 361 GAGGGCTGTT TTGGGCAGTG TAAGTGACTA CTGTGCTCAC CACACTCACT GCAGTGTGAT 421 GA Predicted gene structure (within gDNA segment 1 to 1703): Exon 1 68 189 ( 122 n); cDNA 242 363 ( 122 n); score: 0.852 Intron 1 190 1034 ( 845 n); Pd: 0.966 (s: 0.90), Pa: 0.997 (s: 0.88) Exon 2 1035 1093 ( 59 n); cDNA 364 422 ( 59 n); score: 0.898 MATCH C06HBa0024L21.1-4+ SGN-E259159+ 0.867 181 0.429 C PGS_C06HBa0024L21.1-4+_SGN-E259159+ (68 189,1035 1093) Alignment (genomic DNA sequence = upper lines): GTGAATGATG TTGTAGTTGA GATAGTGGAA GGTGATGCTA GGCATGTCCT TTGTGAAGCT 127 || || |||| |||||||||| ||| | |||| |||||||||| || |||| | ||||| || GTAAACGATG TTGTAGTTGA GATTGCGGAA GGTGATGCTA GGAGTGTCTT GTGTGATGCA 301 GTAGAGAAAC TTCATGCCTC TGTTTTAGTT GTTGGTTGTC ATGGTTATGG AGTTATAAAG 187 || ||||| | ||||||||| | | |||||| |||||| ||| |||||||||| |||| | ||| GTGGAGAAGC ATCATGCCTC TATGTTAGTT GTTGGTAGTC ATGGTTATGG AGTTCTGAAG 361 AGGTAAATTT AATTTATATA CGTTCACAGT ATAAATAGCT TGTTTATATT TCTAATTAAC 247 || AG........ .......... .......... .......... .......... .......... 363 GAGCAATTCT CGATGGTAAT TCTAGTGTTG TTGATCTTTC CTACTATAAC ATGTTGGTTT 307 .......... .......... .......... .......... .......... .......... 363 CAATTTTTAT CAGGATTAAC ATTTACTATG TTGGTTTTTG GACGATGGCC TTATAGATGA 367 .......... .......... .......... .......... .......... .......... 363 TCTGACCTTA GATTAGATAG AAGAGCATGA AGGTCGAGAA TTAGGGTAGA AAGTTAGTGA 427 .......... .......... .......... .......... .......... .......... 363 ATAGTCGAGC AATTTCTCTT GAAAGAGTGT GGCTCTAGTT GGAGTACCCA TTTTGCTCCC 487 .......... .......... .......... .......... .......... .......... 363 TCTTCTCCTT ATCATTGCTA CTACTAATAT TATTTGTCTT ACTATTTTTT CTTTTCCTTG 547 .......... .......... .......... .......... .......... .......... 363 GCATTTTCAT CAATGCTTCT TCTGTCTTAT ATTTTTCAAA CTTGTTTTCG AAAGATCTTT 607 .......... .......... .......... .......... .......... .......... 363 TTAGCTGAGT GTATCAAAAA ACAATCCCTA TACCTTGCAC AATGTGGGGT TAACGTCTAT 667 .......... .......... .......... .......... .......... .......... 363 ATATTAGGCC CCTTCCCTTC TCTTTTGGAT GAATGGGGTG ATTTAGAAGG TGCTTCCCGA 727 .......... .......... .......... .......... .......... .......... 363 TCTATAGTCC CTCGAAACGA AGGGTTAGGC AGGTAGTATG GGCCCTCTGA CTTCCAGTTA 787 .......... .......... .......... .......... .......... .......... 363 TGTGTTGTGC CGCTCCGGCG AAGAAAATGA AGGGAAGTTG TTCGAGCTTC CGAGTGGACT 847 .......... .......... .......... .......... .......... .......... 363 TACGCTTTAC TCTTACTCTT AGCCTCTTTT CTACCCTCCT AAAGTCCGAC TTGTGAGATC 907 .......... .......... .......... .......... .......... .......... 363 TCATTGGGCA TGTTGGTGTC GTTGTTGTTG ACTTTATAGG TGGTCTGATT GCATATAAAT 967 .......... .......... .......... .......... .......... .......... 363 TTATTTACAC CTTCAATGCT TAGAACAAGA ACTTGTTTTT GTGCTAAACA CATTATTGAT 1027 .......... .......... .......... .......... .......... .......... 363 TGTGCAGGAC TGTTTTGGGT AGTGTAAGTG ACTACTGTGC TCATCATGCC CACTGCAGTG 1087 | | ||||||||| |||||||||| |||||||||| ||| || | |||||||||| .......GGC TGTTTTGGGC AGTGTAAGTG ACTACTGTGC TCACCACACT CACTGCAGTG 416 TGATGA 1093 |||||| TGATGA 422 hqPGS_C06HBa0024L21.1-4+_SGN-E259159+ (68 189,1035 1093) ******************************************************************************** EST sequence 17 +strand 584 n (File: SGN-E356681+) 1 ACAAATCCAT AATAATCCCT TTATATTTCG TGTTCAAATT CTCTACTTCT ACTTTGCTTT 61 TTTCATCAAA TATTTTATTT CATTTCACAC ACAAAAAAAT TGAATTCAAA TTATTGATTA 121 GCAAAAAATG GGAGAGGAAA AATCTGTGAT GGTAGTTGGA TTAGAAGATA ATCAACATAG 181 TTTTTATGCA TTAGAATGGA CTTTGGATCA TTTTTTTACA AATTATAATT CTAATTCTCC 241 TTTTAAACTT GTTATTCTTC ATGCTAAACC TACTCCTGCT TCTGTCATTG GTCTTGCTGT 301 TGGTCCTGGG AGTGTGGAAG CTTTTTCAGC CATAGAGTCT AATTTAAAGA AAATTGCTGC 361 AAGGGTTGTG GAAAAAGCTA AGGAGATATG CAAAGAAAAA TCTGTGAATG ATGTTGTAGT 421 TGAGATAGTG GAAGGTGATG CTAGGCATGT CCTTTGTGAA GCTGTAGAGA AACTTCATGC 481 CTCTGTTTTA GTTGTTGGTT GTCATGGTTA TGGAGTTATA AAGAGGACTG TTTTGGGTAG 541 TGTAAGTGAC TACTGTGCTC ATCATGCCCA CTGCAGTGTG ATGA Predicted gene structure (within gDNA segment 1 to 1703): Exon 1 68 189 ( 122 n); cDNA 404 525 ( 122 n); score: 1.000 Intron 1 190 1034 ( 845 n); Pd: 0.966 (s: 1.00), Pa: 0.997 (s: 1.00) Exon 2 1035 1093 ( 59 n); cDNA 526 584 ( 59 n); score: 1.000 MATCH C06HBa0024L21.1-4+ SGN-E356681+ 1.000 181 0.310 C PGS_C06HBa0024L21.1-4+_SGN-E356681+ (68 189,1035 1093) Alignment (genomic DNA sequence = upper lines): GTGAATGATG TTGTAGTTGA GATAGTGGAA GGTGATGCTA GGCATGTCCT TTGTGAAGCT 127 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGAATGATG TTGTAGTTGA GATAGTGGAA GGTGATGCTA GGCATGTCCT TTGTGAAGCT 463 GTAGAGAAAC TTCATGCCTC TGTTTTAGTT GTTGGTTGTC ATGGTTATGG AGTTATAAAG 187 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTAGAGAAAC TTCATGCCTC TGTTTTAGTT GTTGGTTGTC ATGGTTATGG AGTTATAAAG 523 AGGTAAATTT AATTTATATA CGTTCACAGT ATAAATAGCT TGTTTATATT TCTAATTAAC 247 || AG........ .......... .......... .......... .......... .......... 525 GAGCAATTCT CGATGGTAAT TCTAGTGTTG TTGATCTTTC CTACTATAAC ATGTTGGTTT 307 .......... .......... .......... .......... .......... .......... 525 CAATTTTTAT CAGGATTAAC ATTTACTATG TTGGTTTTTG GACGATGGCC TTATAGATGA 367 .......... .......... .......... .......... .......... .......... 525 TCTGACCTTA GATTAGATAG AAGAGCATGA AGGTCGAGAA TTAGGGTAGA AAGTTAGTGA 427 .......... .......... .......... .......... .......... .......... 525 ATAGTCGAGC AATTTCTCTT GAAAGAGTGT GGCTCTAGTT GGAGTACCCA TTTTGCTCCC 487 .......... .......... .......... .......... .......... .......... 525 TCTTCTCCTT ATCATTGCTA CTACTAATAT TATTTGTCTT ACTATTTTTT CTTTTCCTTG 547 .......... .......... .......... .......... .......... .......... 525 GCATTTTCAT CAATGCTTCT TCTGTCTTAT ATTTTTCAAA CTTGTTTTCG AAAGATCTTT 607 .......... .......... .......... .......... .......... .......... 525 TTAGCTGAGT GTATCAAAAA ACAATCCCTA TACCTTGCAC AATGTGGGGT TAACGTCTAT 667 .......... .......... .......... .......... .......... .......... 525 ATATTAGGCC CCTTCCCTTC TCTTTTGGAT GAATGGGGTG ATTTAGAAGG TGCTTCCCGA 727 .......... .......... .......... .......... .......... .......... 525 TCTATAGTCC CTCGAAACGA AGGGTTAGGC AGGTAGTATG GGCCCTCTGA CTTCCAGTTA 787 .......... .......... .......... .......... .......... .......... 525 TGTGTTGTGC CGCTCCGGCG AAGAAAATGA AGGGAAGTTG TTCGAGCTTC CGAGTGGACT 847 .......... .......... .......... .......... .......... .......... 525 TACGCTTTAC TCTTACTCTT AGCCTCTTTT CTACCCTCCT AAAGTCCGAC TTGTGAGATC 907 .......... .......... .......... .......... .......... .......... 525 TCATTGGGCA TGTTGGTGTC GTTGTTGTTG ACTTTATAGG TGGTCTGATT GCATATAAAT 967 .......... .......... .......... .......... .......... .......... 525 TTATTTACAC CTTCAATGCT TAGAACAAGA ACTTGTTTTT GTGCTAAACA CATTATTGAT 1027 .......... .......... .......... .......... .......... .......... 525 TGTGCAGGAC TGTTTTGGGT AGTGTAAGTG ACTACTGTGC TCATCATGCC CACTGCAGTG 1087 ||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......GAC TGTTTTGGGT AGTGTAAGTG ACTACTGTGC TCATCATGCC CACTGCAGTG 578 TGATGA 1093 |||||| TGATGA 584 hqPGS_C06HBa0024L21.1-4+_SGN-E356681+ (68 189,1035 1093) ******************************************************************************** EST sequence 9 +strand 588 n (File: SGN-E274513+) 1 TATTTTATTT CATTTCACAC ACAAAAAAAT TGAATTCAAA TTATTGATTA GCAAAAAATG 61 GGAGAGGAAA AATCTGTGAT GGTAGTTGGA TTAGAAGATA ATCAACATAG TTTTTATGCA 121 TTAGAATGGA CTTTGGATCA TTTTTTTACA AATTATAATT CTAATTCTCC TTTTAAACTT 181 GTTATTCTTC ATGCTAAACC TACTCCTGCT TCTGTCATTG GTCTTGCTGT TGGTCCTGGG 241 AGTGTGGAAG CTTTTTCAGC CATAGAGTCT AATTTAAAGA AAATTGCTGC AAGGGTTGTG 301 GAAAAAGCTA AGGAGATATG CAAAGAAAAA TCTGTAATTT ATTATTATTA TCATTATTAA 361 AACAATGATT TTTTTAAAAA AAAAAGGTTT AAAAAAATCA TTTTTACGTA GTGATTTGAT 421 ATTTTTGTAC TATTTTGTAG GTGAATGATG TTGTAGTTGA GATAGTGGAA GGTGATGCTA 481 GGCATGTCCT TTGTGAAGCT GTAGAGAAAC TTCATGCCTC TGTTTTAGTT GTTGGTTGTC 541 ATGGTTATGG AGTTATAAAG AGGTAAATTT AATTTATATA CGTTCACA Predicted gene structure (within gDNA segment 1 to 825): Exon 1 1 215 ( 215 n); cDNA 374 588 ( 215 n); score: 0.995 MATCH C06HBa0024L21.1-4+ SGN-E274513+ 0.995 215 0.366 C PGS_C06HBa0024L21.1-4+_SGN-E274513+ (1 215) Alignment (genomic DNA sequence = upper lines): TTTAAAAAAA AAGGTTTAAA AAAATCATTT TTACGTAGTG ATTTGATATT TTTGTACTAT 60 || ||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTAAAAAAAA AAGGTTTAAA AAAATCATTT TTACGTAGTG ATTTGATATT TTTGTACTAT 433 TTTGTAGGTG AATGATGTTG TAGTTGAGAT AGTGGAAGGT GATGCTAGGC ATGTCCTTTG 120 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTGTAGGTG AATGATGTTG TAGTTGAGAT AGTGGAAGGT GATGCTAGGC ATGTCCTTTG 493 TGAAGCTGTA GAGAAACTTC ATGCCTCTGT TTTAGTTGTT GGTTGTCATG GTTATGGAGT 180 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAAGCTGTA GAGAAACTTC ATGCCTCTGT TTTAGTTGTT GGTTGTCATG GTTATGGAGT 553 TATAAAGAGG TAAATTTAAT TTATATACGT TCACA 215 |||||||||| |||||||||| |||||||||| ||||| TATAAAGAGG TAAATTTAAT TTATATACGT TCACA 588 hqPGS_C06HBa0024L21.1-4+_SGN-E274513+ (1 215) ******************************************************************************** EST sequence 18 +strand 418 n (File: SGN-E249992+) 1 TCAATTTTAG TTATAATATA TAGAAAACTT GTATTAACAA ATCACTCTAG GTAAGAGAAA 61 GTGAACTAAA TACGTTAACG AATTGAAATC ACTTATTAGC TCGAAAAATT TTAAATTATA 121 TATATTATAT ATATATAGGT AAGAAAAAGT GAACTAAATG CGTTCACGAA TTGAAATCAC 181 TTATTAGCTC GAAAAATTTC AAATTATATA TATATATATA TACACATATA TGATGTTTCG 241 ATTTTACTTT TTTTTTTTAA TGAATTGTGT AGGGAGTGTG GAAGCTTTTT CAGCCATAGA 301 GTCTAATTTA AAGAAAATTG CTGCAAGGGT TGTGGAAAAA GCTAAGGAGA TATGCAAAGA 361 AAAATCTGTG AATGATGTTG TAGTTGAGAT AGTGGAAGGT GATGCTAGGC ATGTCCTT Predicted gene structure (within gDNA segment 1 to 728): Exon 1 68 118 ( 51 n); cDNA 368 418 ( 51 n); score: 1.000 MATCH C06HBa0024L21.1-4+ SGN-E249992+ 1.000 51 0.122 C PGS_C06HBa0024L21.1-4+_SGN-E249992+ (68 118) Alignment (genomic DNA sequence = upper lines): GTGAATGATG TTGTAGTTGA GATAGTGGAA GGTGATGCTA GGCATGTCCT T 118 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| | GTGAATGATG TTGTAGTTGA GATAGTGGAA GGTGATGCTA GGCATGTCCT T 418 hqPGS_C06HBa0024L21.1-4+_SGN-E249992+ (68 118) ******************************************************************************** EST sequence 6 +strand 690 n (File: SGN-E253631+) 1 TGGTGGTTGT GTAACAAAAC AAATACTTTA GGGTCTTGTG TAGTGTTAAT CACAATCTTC 61 ATGTATAAAA TAAAAGACTA AATGCAGTGT ATGGAGCTCC AAAAAAAAAA AAAAAAAAAA 121 CTCGAGACTA GTTCTCCAAA AAGCAGCACA AATTGGAGTA ACTTCTTCTT CTCATACTGC 181 TAATAACATG AGCGCCACAA CTTTTTTCAG TCCTACTACC AGTACAACAA CTGGCATTGC 241 AATGTCAGGA TCAGGATCAG GAGCAGGAGT AGCACGTCAA TATCATCCAT TTGAAAATAA 301 TAATAATAAT AATAATACAA ACACTGATTT TGTTACTGGT AATACGTCTT TTCCTGATTT 361 TGGTGCGAGT GTCACCCCTG GGTTCATGGA ACAAGTCCAT GACATGCAAA ACATGATGGC 421 TACTACTGCA CCTTCTTTGC CATGTACTAG TTTTGATGAA GGATTTGGTC GCGGCGCGCA 481 TTTGATGAGA CAAGGTAAAG AAAATAATGA AGGGTTGACA AGAGATTTTT TGGGACTTAG 541 AGCATTTCCA CATCACAGGG ATTTTCTCAG TCCTACTACA CCACCTGCTG CTCTTCATTA 601 TAACATGGGT TCTTCTGCTG CTGCTGCTGC TCCTGCTTCA TTTGATCAAC ATCATCATCA 661 TCATCAGAAT CAAAATCAAA ATCAATTACC Predicted gene structure (within gDNA segment 686 to 9077): Exon 1 1286 1387 ( 102 n); cDNA 1 102 ( 102 n); score: 1.000 Intron 1 1388 7025 (5638 n); Pd: 0.000 (s: 1.00), Pa: 0.000 (s: 0) Exon 2 7026 7039 ( 14 n); cDNA 103 116 ( 14 n); score: 0.786 MATCH C06HBa0024L21.1-4+ SGN-E253631+ 1.000 116 0.168 C PGS_C06HBa0024L21.1-4+_SGN-E253631+ (1286 1387,7026 7039) Alignment (genomic DNA sequence = upper lines): TGGTGGTTGT GTAACAAAAC AAATACTTTA GGGTCTTGTG TAGTGTTAAT CACAATCTTC 1345 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGTGGTTGT GTAACAAAAC AAATACTTTA GGGTCTTGTG TAGTGTTAAT CACAATCTTC 60 ATGTATAAAA TAAAAGACTA AATGCAGTGT ATGGAGCTCC AAGTTATCCT CCTCATAAAT 1405 |||||||||| |||||||||| |||||||||| |||||||||| || ATGTATAAAA TAAAAGACTA AATGCAGTGT ATGGAGCTCC AA........ .......... 102 ATATCAGGTT GTCCACGAGA ATTATTAGTA GTATAGAAAC TTGATATACA TTTAGTGAGC 1465 .......... .......... .......... .......... .......... .......... 102 TTCTTACTCA TTGGGATCCA CTTCTTTCAG AAACAGTTGT ATTTTTTTTA ATGAATTCGA 1525 .......... .......... .......... .......... .......... .......... 102 TTTGATCATT ATTTTCAACT AAGTCGTTCA AGATTGTTGC GTTGAGTTGT TACTCGAGGC 1585 .......... .......... .......... .......... .......... .......... 102 AAGGAATGGA TATAACTCTG TGAACTAGTC AATTCTATTT CTCAAAGTGG GATAAGAAAG 1645 .......... .......... .......... .......... .......... .......... 102 GGTTATAACT CACAGAAGGG TAATAAACAT CCTTCAATCA CAAAGATAAA AGGTGACTGC 1705 .......... .......... .......... .......... .......... .......... 102 CCTATGGCAC CGGCAAACCA GGGCTTAAGG TTGCATAAAA CACCAACCTC CCTACGACCC 1765 .......... .......... .......... .......... .......... .......... 102 TAATTCATCA GGAAAACAGA CACACATCAG GAAAAGAACT TACAAAGTCA CAAGAGTGCA 1825 .......... .......... .......... .......... .......... .......... 102 GACAATGTCA TTACATAAGT AGCATTTCAC CTGCAGGAAA CAAATAACAA AATCTGCAAA 1885 .......... .......... .......... .......... .......... .......... 102 TATCCAAGAC ATAATTTTCA ATTTTTGCCA TCATACATGC TGCAAAGTTG CTTAAAATAC 1945 .......... .......... .......... .......... .......... .......... 102 TAGAATACTG CAGTCTTCCC CAAGTCAAAG GTTCACAGTT GAGTTCTATT TTGGTCATGG 2005 .......... .......... .......... .......... .......... .......... 102 ACCAAAAAAT TCAGAAGCCA TTCATCAGGA CTAGTTATCG GAAAAGATGA CACCAACAGC 2065 .......... .......... .......... .......... .......... .......... 102 TCAGCTGCTC TATTCAGGCA CAGCAGCACA CTCTCTATCT CCGCACCTGC AGCAACAGCT 2125 .......... .......... .......... .......... .......... .......... 102 TAATCCACAA TATAGCTCTC ACCTGTAAAA TTGTAATCAA TAGTCAACAA AATAGCAATG 2185 .......... .......... .......... .......... .......... .......... 102 ATATGTTATG CCTCAAGCAA CTGGATGACT GTTCATTAAT CTACAAAAAA AAAAACAGAT 2245 .......... .......... .......... .......... .......... .......... 102 GAGCAAGAAG ACCTCGACAA ACTCCCACTG CGACTCCGGC TGCGGCTCCT GCTAGGGCTT 2305 .......... .......... .......... .......... .......... .......... 102 CTCCTGGAAT TGCGTGGTTT GGGGCTTTTG CTCCTGCTGG GGCTCCTCCT GGAATTGCGT 2365 .......... .......... .......... .......... .......... .......... 102 GGTTCGGGGC TTTTACTCAT GCTCTTGCTT CTCCTGGAAT CACGCAGTTT GGGGCTCTTG 2425 .......... .......... .......... .......... .......... .......... 102 CTTGGACTCT CGCTTCTCCT GGAATCACGA GGTTTTGGGC TTTTACTCAA GCTCTGGCTT 2485 .......... .......... .......... .......... .......... .......... 102 CTCCTGGAGT CGCGAGGTTT TGGGCTTTTG CTCACACGTT TTGGGCGCTG AGACCAATCC 2545 .......... .......... .......... .......... .......... .......... 102 AGCCAAATAT AAAATGCCAA CAAACAAAGA GAGGATTCGA AGTAAAAAAG AATGTAATTC 2605 .......... .......... .......... .......... .......... .......... 102 AAATAACTTA ATACAAATGT AATAAGACAA AATAGTTCTA CCGCCAGATA CAATAATTCC 2665 .......... .......... .......... .......... .......... .......... 102 AAGCTTTCAT TTTTATCTTA GAAGAGTCAT TTGACTTACA GATGGTACTG GGGATCTGGA 2725 .......... .......... .......... .......... .......... .......... 102 TCTTGATGGA GATCTGCAAA ATGTCCAGAA ACAACTCAAT TTAATATCCA ACCTTCCGCT 2785 .......... .......... .......... .......... .......... .......... 102 TAACAACTTT CATCCGACTG CCTTGATGCC ACTTCCACGT CGGAGTGGCC ATAATCAAAG 2845 .......... .......... .......... .......... .......... .......... 102 TAGACATGCA GAAACCCGTT ACCATTTCAC CATCCCAAAG AGAAAACAAT GACAAGTATG 2905 .......... .......... .......... .......... .......... .......... 102 AAGCCATGCA AGTTACCTAG TTAAGGAAGA GTTCTAGTCA ATAATTTAAG TTTGTGTTGT 2965 .......... .......... .......... .......... .......... .......... 102 TTAAAGACCA ATTAACAGGA AGTGAAAGAA CCAATTAGTG TCTTATTAGC TTGCCAGATG 3025 .......... .......... .......... .......... .......... .......... 102 GCGATCCCAA ATTCAAAGTG AAGTTCTAGT ATGCCACTCC AGCTTGACCA TCAAAATCCA 3085 .......... .......... .......... .......... .......... .......... 102 TGATCTTCTT GTTCCCAATC TTAGCATCGA TGGACATTTC ATGATGCTCA TTAGAGGAGA 3145 .......... .......... .......... .......... .......... .......... 102 GACACCATAA AAGATTCCGA AGCTGCCATC TAGAAAACAG CATACCTCCA CAACAACATT 3205 .......... .......... .......... .......... .......... .......... 102 TGTTGTAGGC AAGACCATAT CCACTCAAGA TCCTAATATG CATTCCAAGA TCCTCGTATA 3265 .......... .......... .......... .......... .......... .......... 102 AATCCAACAT CTAGAAAAAC CAACAATGTG ATTTCTCATA TTTACAAAGG AAATAATAAA 3325 .......... .......... .......... .......... .......... .......... 102 TGATACCTTG ACAACACAGA ATATTTTCCC GACATTTCCA AAATGCAAAA GTCACAAGAA 3385 .......... .......... .......... .......... .......... .......... 102 GCATAGGAAG AACCAACTTC TACATCCAAC ACCCAACAAC TATTTTGTTC CTAATGGATT 3445 .......... .......... .......... .......... .......... .......... 102 CTGAAATGCA GTATCTAGAC ATCTTTTCAT AACTGAATGA CCAGTTGACC ACATATTTGA 3505 .......... .......... .......... .......... .......... .......... 102 TAGCCGCAAT TACAGTTAGA CACAGCATAA TTAGAAGAAG AAGAACAATC CTGATGTACA 3565 .......... .......... .......... .......... .......... .......... 102 GGACTCTGCA CTTGTGATGT TCCCTAGCTT GTCTGGTTTA TCAAATGGTT TGACATTGCT 3625 .......... .......... .......... .......... .......... .......... 102 TAGGTTCAAA AAGATCTATC ACCCTGAAGC AGACTGGGTT TTTTTGGACG GAGACACCCT 3685 .......... .......... .......... .......... .......... .......... 102 GAAGCAGAAT GAAATTAACA TTGGCTATCT CTATGCCACC AAAAAAGATG CAGAATTGTA 3745 .......... .......... .......... .......... .......... .......... 102 CCTCACCATA ATATAAAGCC TATTAAAACT ACAATACGAG CACCATATTA GCTAATGACA 3805 .......... .......... .......... .......... .......... .......... 102 GCTTAGTTAC CCACTGAGCC ATTGCACGTT GATCTAGAAT CTTGACAAAT TTCCAAAAGG 3865 .......... .......... .......... .......... .......... .......... 102 TTCACTTACA ATTTTGGAAG GACGATATTG ATCCAAACTG AATGAGGGAT CAGAACCTTA 3925 .......... .......... .......... .......... .......... .......... 102 ATGTTCATAC GCAGTACACA TGATCTGTTA CTCTATATAT GGGAAAGAAG GCCGTTGTCG 3985 .......... .......... .......... .......... .......... .......... 102 GGCCAAGACT TACCACATCA ATCATAAATA ATGTACAACC AATATAATGC TTCTCGAAAA 4045 .......... .......... .......... .......... .......... .......... 102 ATCAAAAAGG AGGAACAATT GAAATCATTT TGCAGATGCA ATTTGCAATT TGAATTTGTG 4105 .......... .......... .......... .......... .......... .......... 102 AAATTTACAA CCAACTTGTG TGAAAATGTT AAATTGGTCA CACTGCAAAA CAACTTTTTG 4165 .......... .......... .......... .......... .......... .......... 102 CTTCAAAGCC ATCTCATGTC CACAACTATA CAAAGTCTAG TCAAGATTAA GGGTTGGAAA 4225 .......... .......... .......... .......... .......... .......... 102 CAAAGTGCTC AGCTGATTTC CCACTAAATA AATGAGGTGC AAGATGCAAC AGTTAATTCC 4285 .......... .......... .......... .......... .......... .......... 102 CAGGTGGCTT TCACAAAGAA AAGATTAAAA TGATTAAGAT AAACTGATAG ACACAAGGAC 4345 .......... .......... .......... .......... .......... .......... 102 TTTTGACTCA AAAAAAGACC AGTACAAGGA CTTGCATAAA AATATACATT AACCTTGTAC 4405 .......... .......... .......... .......... .......... .......... 102 TATATGCTAC TTTTACATAA CCTGCCCCAA CAACAAAATG GGTAGATATG ACCAGTAAGA 4465 .......... .......... .......... .......... .......... .......... 102 AAGATTACCT TGACAAAGAG CGTCCTTTTA ACCCAGAACG GGGCTGAGAA GAGACAGATC 4525 .......... .......... .......... .......... .......... .......... 102 TAGAACGAGA TCTTGTACGC TTTGACGACT TAGCTTTAGG AGATTTGCTG CTAGGAAAGA 4585 .......... .......... .......... .......... .......... .......... 102 GCAGCAATGA GATACATAGT AGCATTCAAA GGTGAAGTAA CAAGCTATAA AACGTGCAAA 4645 .......... .......... .......... .......... .......... .......... 102 CTACATAATA CATACCTTCT GCTCCGGCTG CGACTGTAAC TTCGACTGCG GCTACGGCTA 4705 .......... .......... .......... .......... .......... .......... 102 CCACTCTTTC CTCTCGAGTA AGAACGGCTG CGGCTGCGGC TTCTAGAATC ATGTTCCTTC 4765 .......... .......... .......... .......... .......... .......... 102 ACCTACATAA GACAAAGCAA TATTTTTATG AAGCATAAGA CAATGGTATA GGCTAACAAA 4825 .......... .......... .......... .......... .......... .......... 102 AGAAAAGGCA CTAAGCATCC TGCAATCATA TCATTTGAGT TATAATCACA TCATACCCGA 4885 .......... .......... .......... .......... .......... .......... 102 ATTGTTGAAC GAGAAAAAGC ATTCCGAAAC TCAGATTCAT CAAGTTTTTT TATCTACATA 4945 .......... .......... .......... .......... .......... .......... 102 CAAGGAAAAT TAATTACACT CGTTAGTCGA GCATAAACAT ATTTCAAATA TCTTGAACAA 5005 .......... .......... .......... .......... .......... .......... 102 AAATTGAGGA TAATTATACA GAATAAGAAA CAGGAGATAG CTTACAGCAT ATTTCATGTC 5065 .......... .......... .......... .......... .......... .......... 102 GTCATAGTTG GTATAATCCA CAATCCCAGT GGTCCCTGAA GAGCAAAACT GATTGTTAGC 5125 .......... .......... .......... .......... .......... .......... 102 GCACCATCCA CCACAAAAGA ATCACTTAAG GAGAGTAAAT TCACAAGTCA TAGCAAGAGT 5185 .......... .......... .......... .......... .......... .......... 102 AGGGTGCTTG CCACAACAAA AATTGAGTAG AAGCACAAGA AATTATTTCA AAGATAAGGC 5245 .......... .......... .......... .......... .......... .......... 102 AGCACCACAT TTGATTACAG AATAAAAAAA ATCTGAAGCA CATTATTTCC ACAGGTCTTT 5305 .......... .......... .......... .......... .......... .......... 102 AAACTGCTCA GCCATACATT CGGGCCATTT TAGTCACAAC CACAAAATTG AAATATCCAA 5365 .......... .......... .......... .......... .......... .......... 102 TAAATCTCAG CTGACCCTAG ATTTTGAGTG GCAATCACTA TTTTCAATTC CATTTATATA 5425 .......... .......... .......... .......... .......... .......... 102 GGGTAAAATC AACTATTAAA TTCCTATTTT AGAGTCGAAC CATCTTTGCC ATCTGTCTAT 5485 .......... .......... .......... .......... .......... .......... 102 TAACTGTCTT AATTATAAAG GCTCTAGTAT ATTTGTCCTG ACAAAAATGA TGACAATTTT 5545 .......... .......... .......... .......... .......... .......... 102 CTATGTAAAA CCTAATAGCA AGCTAACTGA AACAATTAAA GGAAAGAAGG AAAGTTATCT 5605 .......... .......... .......... .......... .......... .......... 102 TATTGCATAA TCTGAAACAT TAAAGGAAAG AGGTAAAAAG AGATCTTATT GCATGATCTT 5665 .......... .......... .......... .......... .......... .......... 102 GCACTAAGCT ACCTTTTGGA GTTGAGTTAG CATGATCTGA AACATGAAGG AAAGAGGGAA 5725 .......... .......... .......... .......... .......... .......... 102 AAAGAGATCT TATTGCATGA TCTGGCACTA AGGTACCTTT TGGAGTTGAG TTGGGCCCAA 5785 .......... .......... .......... .......... .......... .......... 102 ATTTTCCACT TAACATGGTA TGATATTAGA GCCAGACCCA CTCCTATTCT TGGTGTATCC 5845 .......... .......... .......... .......... .......... .......... 102 ATTGTTAAGC CCACTTATTA GATTAGCCTC TTCATTATCT TGGCTTGTTC AAGGTTGGTA 5905 .......... .......... .......... .......... .......... .......... 102 ACATGCAATA AGCCAGATAG CAGTACTATC TTGTTATGGA GGACCACTAT CACCAGGCGG 5965 .......... .......... .......... .......... .......... .......... 102 GACATAATCC AGGCATTACA TCCAGACACA CATCAACATT TATTCAAAGA GTGAGGAATA 6025 .......... .......... .......... .......... .......... .......... 102 CACAGGTAAG CACAGGATGT TATTCAACAT GGAAGATGAA AAAATAAGCT CACTTATTTC 6085 .......... .......... .......... .......... .......... .......... 102 CTGCTATCTT CTCCTCATCG TCCAACAGAG CTCCCACTTA CCTCTCCAAC AAATGCCCCA 6145 .......... .......... .......... .......... .......... .......... 102 AAAAATAATT AATCTACTCT TCTACAACAC CTGGGTTGAA ACATTACCGT CTTTCCTCAA 6205 .......... .......... .......... .......... .......... .......... 102 CCCCAAACCA AGGATTTCTT TTAGACTTCC CTCCTTTCTC TTTTTCTGCT CCATTTTATT 6265 .......... .......... .......... .......... .......... .......... 102 TTTCCCTGCT ATTTTTTTTA CTTTATGCGT TACCCCAACA AATTTTTCAT CTACTTTTTT 6325 .......... .......... .......... .......... .......... .......... 102 TTTATGTTAA TACTTTTTAA CTTTCTGTAA TTCTTTCTTG TTCTATTATA TTACTATGGC 6385 .......... .......... .......... .......... .......... .......... 102 ACCAGAAGAG AAAAATAGTT TTCTGACTAA AACGGATGGA ACTATGTTTT GAATGATGAT 6445 .......... .......... .......... .......... .......... .......... 102 GTACAATGAC AAACTTCAGT CAAAGGATAT ATAATATATC AAACCTGACC ATTTTACCAA 6505 .......... .......... .......... .......... .......... .......... 102 GATTGGTAAT AGCACCCATT ATCCCATCCA AACTGAGTGA CGCAGTCACT TTATCCAGCC 6565 .......... .......... .......... .......... .......... .......... 102 AAGTTGGCTA AACATTATAG TATAAACTAT AAACTATAAA CTAAGCCAGA AGTCATCAAA 6625 .......... .......... .......... .......... .......... .......... 102 TATATAACTA ATGCACGTTA CTGCAGCGTA CAGCAATTTT GTTCTCAACA ATAGCCCAAA 6685 .......... .......... .......... .......... .......... .......... 102 AATATCATCT ATTCACGGGC CATAGAACAA GATTTGGTTT TGATTGGGTC TGAAAGATAA 6745 .......... .......... .......... .......... .......... .......... 102 TATTAGCTGT TATATGGTTG GGAAAGACAC TTGCAGACCC AATGATGAAC CACAGTCACA 6805 .......... .......... .......... .......... .......... .......... 102 TTCAACACAA GATTTAAGAA ATGATTCTAC TTTGAGAAAG CCTTTCTAGT TGCATTATGA 6865 .......... .......... .......... .......... .......... .......... 102 AAGATAGTCA GCTCAAGGTA GTAAGTTAAA GAGCCATAAA AACAATTGAA ATTCAAGTTA 6925 .......... .......... .......... .......... .......... .......... 102 TCCACAGAAA ATATATTGCT ATTCTCAAAA AAAAGGATCA AATATCCATC CTTCTCCAAC 6985 .......... .......... .......... .......... .......... .......... 102 CACTTCTCAA AGAAGAAAAC CCAACAGAAA GACGGAAAAG GAAAAAAAGA GAAA 7039 ||||||| | ||| .......... .......... .......... .......... AAAAAAAAAA AAAA 116 hqPGS_C06HBa0024L21.1-4+_SGN-E253631+ (1286 1387) ******************************************************************************** EST sequence 8 +strand 640 n (File: SGN-E255587+) 1 TGGTGGTTGT GTAACAAAAC AAATACTTTA GGGTCTTGTG TAGTGTTAAT CACAATCTTC 61 ATGTATAAAA TAAAAGACTA AATGCAGTGT ATGGAGCTCC AAAAAAAAAA AAAAAAAAAA 121 CTCGAGACTA GTTCTCCAAA AAGCAGCACA AATTGGAGTA ACTTCTTCTT CTCATACTGC 181 TAATAACATG AGCGCCACAA CTTTTTTCAG TCCTACTACC AGTACAACAA CTGGCATTGC 241 AATGTCAGGA TCAGGATCAG GAGCAGGAGT AGCACGTCAA TATCATCCAT TTGAAAATAA 301 TAATAATAAT AATAATACAA ACACTGATTT TGTTACTGGT AATACGTCTT TTCCTGATTT 361 TGGTGCGAGT GTCACCCCTG GGTTCATGGA ACAAGTCCAT GACATGCAAA ACATGATGGC 421 TACTACTGCA CCTTCTTTGC CATGTACTAG TTTTGATGAA GGATTTGGTC GCGGCGCGCA 481 TTTGATGAGA CAAGGTAAAG AAAATAATGA AGGGTTGACA AGAGATTTTT TGGGACTTAG 541 AGCATTTCCA CATCACAGGG ATTTTCTCAG TCCTACTACA CCACCTGCTG CTCTTCATTA 601 TAACATGGGT TCTTCTGCTG CTGCTGCTGC TCCTGCTTCA Predicted gene structure (within gDNA segment 686 to 7977): Exon 1 1286 1387 ( 102 n); cDNA 1 102 ( 102 n); score: 1.000 Intron 1 1388 7025 (5638 n); Pd: 0.000 (s: 1.00), Pa: 0.000 (s: 0) Exon 2 7026 7039 ( 14 n); cDNA 103 116 ( 14 n); score: 0.786 MATCH C06HBa0024L21.1-4+ SGN-E255587+ 1.000 116 0.181 C PGS_C06HBa0024L21.1-4+_SGN-E255587+ (1286 1387,7026 7039) Alignment (genomic DNA sequence = upper lines): TGGTGGTTGT GTAACAAAAC AAATACTTTA GGGTCTTGTG TAGTGTTAAT CACAATCTTC 1345 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGTGGTTGT GTAACAAAAC AAATACTTTA GGGTCTTGTG TAGTGTTAAT CACAATCTTC 60 ATGTATAAAA TAAAAGACTA AATGCAGTGT ATGGAGCTCC AAGTTATCCT CCTCATAAAT 1405 |||||||||| |||||||||| |||||||||| |||||||||| || ATGTATAAAA TAAAAGACTA AATGCAGTGT ATGGAGCTCC AA........ .......... 102 ATATCAGGTT GTCCACGAGA ATTATTAGTA GTATAGAAAC TTGATATACA TTTAGTGAGC 1465 .......... .......... .......... .......... .......... .......... 102 TTCTTACTCA TTGGGATCCA CTTCTTTCAG AAACAGTTGT ATTTTTTTTA ATGAATTCGA 1525 .......... .......... .......... .......... .......... .......... 102 TTTGATCATT ATTTTCAACT AAGTCGTTCA AGATTGTTGC GTTGAGTTGT TACTCGAGGC 1585 .......... .......... .......... .......... .......... .......... 102 AAGGAATGGA TATAACTCTG TGAACTAGTC AATTCTATTT CTCAAAGTGG GATAAGAAAG 1645 .......... .......... .......... .......... .......... .......... 102 GGTTATAACT CACAGAAGGG TAATAAACAT CCTTCAATCA CAAAGATAAA AGGTGACTGC 1705 .......... .......... .......... .......... .......... .......... 102 CCTATGGCAC CGGCAAACCA GGGCTTAAGG TTGCATAAAA CACCAACCTC CCTACGACCC 1765 .......... .......... .......... .......... .......... .......... 102 TAATTCATCA GGAAAACAGA CACACATCAG GAAAAGAACT TACAAAGTCA CAAGAGTGCA 1825 .......... .......... .......... .......... .......... .......... 102 GACAATGTCA TTACATAAGT AGCATTTCAC CTGCAGGAAA CAAATAACAA AATCTGCAAA 1885 .......... .......... .......... .......... .......... .......... 102 TATCCAAGAC ATAATTTTCA ATTTTTGCCA TCATACATGC TGCAAAGTTG CTTAAAATAC 1945 .......... .......... .......... .......... .......... .......... 102 TAGAATACTG CAGTCTTCCC CAAGTCAAAG GTTCACAGTT GAGTTCTATT TTGGTCATGG 2005 .......... .......... .......... .......... .......... .......... 102 ACCAAAAAAT TCAGAAGCCA TTCATCAGGA CTAGTTATCG GAAAAGATGA CACCAACAGC 2065 .......... .......... .......... .......... .......... .......... 102 TCAGCTGCTC TATTCAGGCA CAGCAGCACA CTCTCTATCT CCGCACCTGC AGCAACAGCT 2125 .......... .......... .......... .......... .......... .......... 102 TAATCCACAA TATAGCTCTC ACCTGTAAAA TTGTAATCAA TAGTCAACAA AATAGCAATG 2185 .......... .......... .......... .......... .......... .......... 102 ATATGTTATG CCTCAAGCAA CTGGATGACT GTTCATTAAT CTACAAAAAA AAAAACAGAT 2245 .......... .......... .......... .......... .......... .......... 102 GAGCAAGAAG ACCTCGACAA ACTCCCACTG CGACTCCGGC TGCGGCTCCT GCTAGGGCTT 2305 .......... .......... .......... .......... .......... .......... 102 CTCCTGGAAT TGCGTGGTTT GGGGCTTTTG CTCCTGCTGG GGCTCCTCCT GGAATTGCGT 2365 .......... .......... .......... .......... .......... .......... 102 GGTTCGGGGC TTTTACTCAT GCTCTTGCTT CTCCTGGAAT CACGCAGTTT GGGGCTCTTG 2425 .......... .......... .......... .......... .......... .......... 102 CTTGGACTCT CGCTTCTCCT GGAATCACGA GGTTTTGGGC TTTTACTCAA GCTCTGGCTT 2485 .......... .......... .......... .......... .......... .......... 102 CTCCTGGAGT CGCGAGGTTT TGGGCTTTTG CTCACACGTT TTGGGCGCTG AGACCAATCC 2545 .......... .......... .......... .......... .......... .......... 102 AGCCAAATAT AAAATGCCAA CAAACAAAGA GAGGATTCGA AGTAAAAAAG AATGTAATTC 2605 .......... .......... .......... .......... .......... .......... 102 AAATAACTTA ATACAAATGT AATAAGACAA AATAGTTCTA CCGCCAGATA CAATAATTCC 2665 .......... .......... .......... .......... .......... .......... 102 AAGCTTTCAT TTTTATCTTA GAAGAGTCAT TTGACTTACA GATGGTACTG GGGATCTGGA 2725 .......... .......... .......... .......... .......... .......... 102 TCTTGATGGA GATCTGCAAA ATGTCCAGAA ACAACTCAAT TTAATATCCA ACCTTCCGCT 2785 .......... .......... .......... .......... .......... .......... 102 TAACAACTTT CATCCGACTG CCTTGATGCC ACTTCCACGT CGGAGTGGCC ATAATCAAAG 2845 .......... .......... .......... .......... .......... .......... 102 TAGACATGCA GAAACCCGTT ACCATTTCAC CATCCCAAAG AGAAAACAAT GACAAGTATG 2905 .......... .......... .......... .......... .......... .......... 102 AAGCCATGCA AGTTACCTAG TTAAGGAAGA GTTCTAGTCA ATAATTTAAG TTTGTGTTGT 2965 .......... .......... .......... .......... .......... .......... 102 TTAAAGACCA ATTAACAGGA AGTGAAAGAA CCAATTAGTG TCTTATTAGC TTGCCAGATG 3025 .......... .......... .......... .......... .......... .......... 102 GCGATCCCAA ATTCAAAGTG AAGTTCTAGT ATGCCACTCC AGCTTGACCA TCAAAATCCA 3085 .......... .......... .......... .......... .......... .......... 102 TGATCTTCTT GTTCCCAATC TTAGCATCGA TGGACATTTC ATGATGCTCA TTAGAGGAGA 3145 .......... .......... .......... .......... .......... .......... 102 GACACCATAA AAGATTCCGA AGCTGCCATC TAGAAAACAG CATACCTCCA CAACAACATT 3205 .......... .......... .......... .......... .......... .......... 102 TGTTGTAGGC AAGACCATAT CCACTCAAGA TCCTAATATG CATTCCAAGA TCCTCGTATA 3265 .......... .......... .......... .......... .......... .......... 102 AATCCAACAT CTAGAAAAAC CAACAATGTG ATTTCTCATA TTTACAAAGG AAATAATAAA 3325 .......... .......... .......... .......... .......... .......... 102 TGATACCTTG ACAACACAGA ATATTTTCCC GACATTTCCA AAATGCAAAA GTCACAAGAA 3385 .......... .......... .......... .......... .......... .......... 102 GCATAGGAAG AACCAACTTC TACATCCAAC ACCCAACAAC TATTTTGTTC CTAATGGATT 3445 .......... .......... .......... .......... .......... .......... 102 CTGAAATGCA GTATCTAGAC ATCTTTTCAT AACTGAATGA CCAGTTGACC ACATATTTGA 3505 .......... .......... .......... .......... .......... .......... 102 TAGCCGCAAT TACAGTTAGA CACAGCATAA TTAGAAGAAG AAGAACAATC CTGATGTACA 3565 .......... .......... .......... .......... .......... .......... 102 GGACTCTGCA CTTGTGATGT TCCCTAGCTT GTCTGGTTTA TCAAATGGTT TGACATTGCT 3625 .......... .......... .......... .......... .......... .......... 102 TAGGTTCAAA AAGATCTATC ACCCTGAAGC AGACTGGGTT TTTTTGGACG GAGACACCCT 3685 .......... .......... .......... .......... .......... .......... 102 GAAGCAGAAT GAAATTAACA TTGGCTATCT CTATGCCACC AAAAAAGATG CAGAATTGTA 3745 .......... .......... .......... .......... .......... .......... 102 CCTCACCATA ATATAAAGCC TATTAAAACT ACAATACGAG CACCATATTA GCTAATGACA 3805 .......... .......... .......... .......... .......... .......... 102 GCTTAGTTAC CCACTGAGCC ATTGCACGTT GATCTAGAAT CTTGACAAAT TTCCAAAAGG 3865 .......... .......... .......... .......... .......... .......... 102 TTCACTTACA ATTTTGGAAG GACGATATTG ATCCAAACTG AATGAGGGAT CAGAACCTTA 3925 .......... .......... .......... .......... .......... .......... 102 ATGTTCATAC GCAGTACACA TGATCTGTTA CTCTATATAT GGGAAAGAAG GCCGTTGTCG 3985 .......... .......... .......... .......... .......... .......... 102 GGCCAAGACT TACCACATCA ATCATAAATA ATGTACAACC AATATAATGC TTCTCGAAAA 4045 .......... .......... .......... .......... .......... .......... 102 ATCAAAAAGG AGGAACAATT GAAATCATTT TGCAGATGCA ATTTGCAATT TGAATTTGTG 4105 .......... .......... .......... .......... .......... .......... 102 AAATTTACAA CCAACTTGTG TGAAAATGTT AAATTGGTCA CACTGCAAAA CAACTTTTTG 4165 .......... .......... .......... .......... .......... .......... 102 CTTCAAAGCC ATCTCATGTC CACAACTATA CAAAGTCTAG TCAAGATTAA GGGTTGGAAA 4225 .......... .......... .......... .......... .......... .......... 102 CAAAGTGCTC AGCTGATTTC CCACTAAATA AATGAGGTGC AAGATGCAAC AGTTAATTCC 4285 .......... .......... .......... .......... .......... .......... 102 CAGGTGGCTT TCACAAAGAA AAGATTAAAA TGATTAAGAT AAACTGATAG ACACAAGGAC 4345 .......... .......... .......... .......... .......... .......... 102 TTTTGACTCA AAAAAAGACC AGTACAAGGA CTTGCATAAA AATATACATT AACCTTGTAC 4405 .......... .......... .......... .......... .......... .......... 102 TATATGCTAC TTTTACATAA CCTGCCCCAA CAACAAAATG GGTAGATATG ACCAGTAAGA 4465 .......... .......... .......... .......... .......... .......... 102 AAGATTACCT TGACAAAGAG CGTCCTTTTA ACCCAGAACG GGGCTGAGAA GAGACAGATC 4525 .......... .......... .......... .......... .......... .......... 102 TAGAACGAGA TCTTGTACGC TTTGACGACT TAGCTTTAGG AGATTTGCTG CTAGGAAAGA 4585 .......... .......... .......... .......... .......... .......... 102 GCAGCAATGA GATACATAGT AGCATTCAAA GGTGAAGTAA CAAGCTATAA AACGTGCAAA 4645 .......... .......... .......... .......... .......... .......... 102 CTACATAATA CATACCTTCT GCTCCGGCTG CGACTGTAAC TTCGACTGCG GCTACGGCTA 4705 .......... .......... .......... .......... .......... .......... 102 CCACTCTTTC CTCTCGAGTA AGAACGGCTG CGGCTGCGGC TTCTAGAATC ATGTTCCTTC 4765 .......... .......... .......... .......... .......... .......... 102 ACCTACATAA GACAAAGCAA TATTTTTATG AAGCATAAGA CAATGGTATA GGCTAACAAA 4825 .......... .......... .......... .......... .......... .......... 102 AGAAAAGGCA CTAAGCATCC TGCAATCATA TCATTTGAGT TATAATCACA TCATACCCGA 4885 .......... .......... .......... .......... .......... .......... 102 ATTGTTGAAC GAGAAAAAGC ATTCCGAAAC TCAGATTCAT CAAGTTTTTT TATCTACATA 4945 .......... .......... .......... .......... .......... .......... 102 CAAGGAAAAT TAATTACACT CGTTAGTCGA GCATAAACAT ATTTCAAATA TCTTGAACAA 5005 .......... .......... .......... .......... .......... .......... 102 AAATTGAGGA TAATTATACA GAATAAGAAA CAGGAGATAG CTTACAGCAT ATTTCATGTC 5065 .......... .......... .......... .......... .......... .......... 102 GTCATAGTTG GTATAATCCA CAATCCCAGT GGTCCCTGAA GAGCAAAACT GATTGTTAGC 5125 .......... .......... .......... .......... .......... .......... 102 GCACCATCCA CCACAAAAGA ATCACTTAAG GAGAGTAAAT TCACAAGTCA TAGCAAGAGT 5185 .......... .......... .......... .......... .......... .......... 102 AGGGTGCTTG CCACAACAAA AATTGAGTAG AAGCACAAGA AATTATTTCA AAGATAAGGC 5245 .......... .......... .......... .......... .......... .......... 102 AGCACCACAT TTGATTACAG AATAAAAAAA ATCTGAAGCA CATTATTTCC ACAGGTCTTT 5305 .......... .......... .......... .......... .......... .......... 102 AAACTGCTCA GCCATACATT CGGGCCATTT TAGTCACAAC CACAAAATTG AAATATCCAA 5365 .......... .......... .......... .......... .......... .......... 102 TAAATCTCAG CTGACCCTAG ATTTTGAGTG GCAATCACTA TTTTCAATTC CATTTATATA 5425 .......... .......... .......... .......... .......... .......... 102 GGGTAAAATC AACTATTAAA TTCCTATTTT AGAGTCGAAC CATCTTTGCC ATCTGTCTAT 5485 .......... .......... .......... .......... .......... .......... 102 TAACTGTCTT AATTATAAAG GCTCTAGTAT ATTTGTCCTG ACAAAAATGA TGACAATTTT 5545 .......... .......... .......... .......... .......... .......... 102 CTATGTAAAA CCTAATAGCA AGCTAACTGA AACAATTAAA GGAAAGAAGG AAAGTTATCT 5605 .......... .......... .......... .......... .......... .......... 102 TATTGCATAA TCTGAAACAT TAAAGGAAAG AGGTAAAAAG AGATCTTATT GCATGATCTT 5665 .......... .......... .......... .......... .......... .......... 102 GCACTAAGCT ACCTTTTGGA GTTGAGTTAG CATGATCTGA AACATGAAGG AAAGAGGGAA 5725 .......... .......... .......... .......... .......... .......... 102 AAAGAGATCT TATTGCATGA TCTGGCACTA AGGTACCTTT TGGAGTTGAG TTGGGCCCAA 5785 .......... .......... .......... .......... .......... .......... 102 ATTTTCCACT TAACATGGTA TGATATTAGA GCCAGACCCA CTCCTATTCT TGGTGTATCC 5845 .......... .......... .......... .......... .......... .......... 102 ATTGTTAAGC CCACTTATTA GATTAGCCTC TTCATTATCT TGGCTTGTTC AAGGTTGGTA 5905 .......... .......... .......... .......... .......... .......... 102 ACATGCAATA AGCCAGATAG CAGTACTATC TTGTTATGGA GGACCACTAT CACCAGGCGG 5965 .......... .......... .......... .......... .......... .......... 102 GACATAATCC AGGCATTACA TCCAGACACA CATCAACATT TATTCAAAGA GTGAGGAATA 6025 .......... .......... .......... .......... .......... .......... 102 CACAGGTAAG CACAGGATGT TATTCAACAT GGAAGATGAA AAAATAAGCT CACTTATTTC 6085 .......... .......... .......... .......... .......... .......... 102 CTGCTATCTT CTCCTCATCG TCCAACAGAG CTCCCACTTA CCTCTCCAAC AAATGCCCCA 6145 .......... .......... .......... .......... .......... .......... 102 AAAAATAATT AATCTACTCT TCTACAACAC CTGGGTTGAA ACATTACCGT CTTTCCTCAA 6205 .......... .......... .......... .......... .......... .......... 102 CCCCAAACCA AGGATTTCTT TTAGACTTCC CTCCTTTCTC TTTTTCTGCT CCATTTTATT 6265 .......... .......... .......... .......... .......... .......... 102 TTTCCCTGCT ATTTTTTTTA CTTTATGCGT TACCCCAACA AATTTTTCAT CTACTTTTTT 6325 .......... .......... .......... .......... .......... .......... 102 TTTATGTTAA TACTTTTTAA CTTTCTGTAA TTCTTTCTTG TTCTATTATA TTACTATGGC 6385 .......... .......... .......... .......... .......... .......... 102 ACCAGAAGAG AAAAATAGTT TTCTGACTAA AACGGATGGA ACTATGTTTT GAATGATGAT 6445 .......... .......... .......... .......... .......... .......... 102 GTACAATGAC AAACTTCAGT CAAAGGATAT ATAATATATC AAACCTGACC ATTTTACCAA 6505 .......... .......... .......... .......... .......... .......... 102 GATTGGTAAT AGCACCCATT ATCCCATCCA AACTGAGTGA CGCAGTCACT TTATCCAGCC 6565 .......... .......... .......... .......... .......... .......... 102 AAGTTGGCTA AACATTATAG TATAAACTAT AAACTATAAA CTAAGCCAGA AGTCATCAAA 6625 .......... .......... .......... .......... .......... .......... 102 TATATAACTA ATGCACGTTA CTGCAGCGTA CAGCAATTTT GTTCTCAACA ATAGCCCAAA 6685 .......... .......... .......... .......... .......... .......... 102 AATATCATCT ATTCACGGGC CATAGAACAA GATTTGGTTT TGATTGGGTC TGAAAGATAA 6745 .......... .......... .......... .......... .......... .......... 102 TATTAGCTGT TATATGGTTG GGAAAGACAC TTGCAGACCC AATGATGAAC CACAGTCACA 6805 .......... .......... .......... .......... .......... .......... 102 TTCAACACAA GATTTAAGAA ATGATTCTAC TTTGAGAAAG CCTTTCTAGT TGCATTATGA 6865 .......... .......... .......... .......... .......... .......... 102 AAGATAGTCA GCTCAAGGTA GTAAGTTAAA GAGCCATAAA AACAATTGAA ATTCAAGTTA 6925 .......... .......... .......... .......... .......... .......... 102 TCCACAGAAA ATATATTGCT ATTCTCAAAA AAAAGGATCA AATATCCATC CTTCTCCAAC 6985 .......... .......... .......... .......... .......... .......... 102 CACTTCTCAA AGAAGAAAAC CCAACAGAAA GACGGAAAAG GAAAAAAAGA GAAA 7039 ||||||| | ||| .......... .......... .......... .......... AAAAAAAAAA AAAA 116 hqPGS_C06HBa0024L21.1-4+_SGN-E255587+ (1286 1387) ******************************************************************************** EST sequence 25 +strand 438 n (File: SGN-E350954+) 1 AGGAGCAAAA GCCCCAAACC ACGCAATTCC AGGAGAAGCC CTAGCAGGAG CCGCAGCCGG 61 AGTCGCAGTG GGAGTTTGTC GAGGTGAGAG CTATATTGTG GATTAAGCTG TTGCTGCAGG 121 TGCGGAGATA GAGAGTGTGC TGCTGTGCCT GAATAGAGCA GCTGAGCTGT TGGTGTCATC 181 TTTTCCGATA ACTAGTCCTG ATGAATGGCT TCTGAATTTT TTGGTCCATG ACCAAAATAG 241 AACTCAACTG TGAACCTTTG ACTTGGGGAA GACTGCAGTA TTCTAGTATT TTAAGCAACT 301 TTGCAGCATG TATGATGGCA AAAATTGAAA ATTATGTCTT GGATATTTGC AGATTTTGTT 361 ATTTGTTTCC TGCAGGTGAA ATGCTACTTA TGTAATGACA TTGTCTGCAC TCTTGTGACT 421 TTGTAAGTTC TTTTCCTG Predicted gene structure (within gDNA segment 2940 to 1183): Exon 1 2340 2258 ( 83 n); cDNA 1 83 ( 83 n); score: 1.000 Intron 1 2257 2148 ( 110 n); Pd: 0.723 (s: 1.00), Pa: 0.997 (s: 1.00) Exon 2 2147 1793 ( 355 n); cDNA 84 438 ( 355 n); score: 1.000 MATCH C06HBa0024L21.1-4- SGN-E350954+ 1.000 438 1.000 C PGS_C06HBa0024L21.1-4-_SGN-E350954+ (2340 2258,2147 1793) Alignment (genomic DNA sequence = upper lines): AGGAGCAAAA GCCCCAAACC ACGCAATTCC AGGAGAAGCC CTAGCAGGAG CCGCAGCCGG 2281 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGAGCAAAA GCCCCAAACC ACGCAATTCC AGGAGAAGCC CTAGCAGGAG CCGCAGCCGG 60 AGTCGCAGTG GGAGTTTGTC GAGGTCTTCT TGCTCATCTG TTTTTTTTTT TGTAGATTAA 2221 |||||||||| |||||||||| ||| AGTCGCAGTG GGAGTTTGTC GAG....... .......... .......... .......... 83 TGAACAGTCA TCCAGTTGCT TGAGGCATAA CATATCATTG CTATTTTGTT GACTATTGAT 2161 .......... .......... .......... .......... .......... .......... 83 TACAATTTTA CAGGTGAGAG CTATATTGTG GATTAAGCTG TTGCTGCAGG TGCGGAGATA 2101 ||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ...GTGAGAG CTATATTGTG GATTAAGCTG TTGCTGCAGG TGCGGAGATA 130 GAGAGTGTGC TGCTGTGCCT GAATAGAGCA GCTGAGCTGT TGGTGTCATC TTTTCCGATA 2041 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGAGTGTGC TGCTGTGCCT GAATAGAGCA GCTGAGCTGT TGGTGTCATC TTTTCCGATA 190 ACTAGTCCTG ATGAATGGCT TCTGAATTTT TTGGTCCATG ACCAAAATAG AACTCAACTG 1981 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACTAGTCCTG ATGAATGGCT TCTGAATTTT TTGGTCCATG ACCAAAATAG AACTCAACTG 250 TGAACCTTTG ACTTGGGGAA GACTGCAGTA TTCTAGTATT TTAAGCAACT TTGCAGCATG 1921 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAACCTTTG ACTTGGGGAA GACTGCAGTA TTCTAGTATT TTAAGCAACT TTGCAGCATG 310 TATGATGGCA AAAATTGAAA ATTATGTCTT GGATATTTGC AGATTTTGTT ATTTGTTTCC 1861 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATGATGGCA AAAATTGAAA ATTATGTCTT GGATATTTGC AGATTTTGTT ATTTGTTTCC 370 TGCAGGTGAA ATGCTACTTA TGTAATGACA TTGTCTGCAC TCTTGTGACT TTGTAAGTTC 1801 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCAGGTGAA ATGCTACTTA TGTAATGACA TTGTCTGCAC TCTTGTGACT TTGTAAGTTC 430 TTTTCCTG 1793 |||||||| TTTTCCTG 438 hqPGS_C06HBa0024L21.1-4-_SGN-E350954+ (2340 2258,2147 1793) ******************************************************************************** EST sequence 53 +strand 440 n (File: SGN-E345135+) 1 CCAAACCACG CAATTCCAGG AGAAGCCCTA GCAGGAGCCG CAGCCGGAGT CGCAGTGGGA 61 GTTTGTCGAG GTGAGAGCTA TATTGTGGAT TAAGCTGTTG CTGCAGGTGC GGAGATAGAG 121 AGTGTGCTGC TGTGCCTGAA TAGAGCAGCT GAGCTGTTGG TGTCATCTTT TCCGATAACT 181 AGTCCTGATG AATGGCTTCT GAATTTTTTG GTCCATGACC AAAATAGAAC TCAACTGTGA 241 ACCTTTGACT TGGGGAAGAC TGCAGTATTC TAGTATTTTA AGCAACTTTG CAGCATGTAT 301 GATGGCAAAA ATTGAAAATT ATGTCTTGGA TATTTGCAGA TTTTGTTATT TGTTTCCTGC 361 AGGTGAAATG CTACTTATGT AATGACATTG TCTGCACTCT TGTGACTTTG TAAGTTCTTT 421 TCCTGAAAAA AAAAAAAAAA Predicted gene structure (within gDNA segment 2927 to 1042): Exon 1 2327 2258 ( 70 n); cDNA 1 70 ( 70 n); score: 1.000 Intron 1 2257 2148 ( 110 n); Pd: 0.723 (s: 1.00), Pa: 0.997 (s: 1.00) Exon 2 2147 1793 ( 355 n); cDNA 71 425 ( 355 n); score: 1.000 PPA cDNA 426 440 MATCH C06HBa0024L21.1-4- SGN-E345135+ 1.000 425 0.966 C PGS_C06HBa0024L21.1-4-_SGN-E345135+ (2327 2258,2147 1793) Alignment (genomic DNA sequence = upper lines): CCAAACCACG CAATTCCAGG AGAAGCCCTA GCAGGAGCCG CAGCCGGAGT CGCAGTGGGA 2268 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCAAACCACG CAATTCCAGG AGAAGCCCTA GCAGGAGCCG CAGCCGGAGT CGCAGTGGGA 60 GTTTGTCGAG GTCTTCTTGC TCATCTGTTT TTTTTTTTGT AGATTAATGA ACAGTCATCC 2208 |||||||||| GTTTGTCGAG .......... .......... .......... .......... .......... 70 AGTTGCTTGA GGCATAACAT ATCATTGCTA TTTTGTTGAC TATTGATTAC AATTTTACAG 2148 .......... .......... .......... .......... .......... .......... 70 GTGAGAGCTA TATTGTGGAT TAAGCTGTTG CTGCAGGTGC GGAGATAGAG AGTGTGCTGC 2088 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGAGAGCTA TATTGTGGAT TAAGCTGTTG CTGCAGGTGC GGAGATAGAG AGTGTGCTGC 130 TGTGCCTGAA TAGAGCAGCT GAGCTGTTGG TGTCATCTTT TCCGATAACT AGTCCTGATG 2028 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTGCCTGAA TAGAGCAGCT GAGCTGTTGG TGTCATCTTT TCCGATAACT AGTCCTGATG 190 AATGGCTTCT GAATTTTTTG GTCCATGACC AAAATAGAAC TCAACTGTGA ACCTTTGACT 1968 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATGGCTTCT GAATTTTTTG GTCCATGACC AAAATAGAAC TCAACTGTGA ACCTTTGACT 250 TGGGGAAGAC TGCAGTATTC TAGTATTTTA AGCAACTTTG CAGCATGTAT GATGGCAAAA 1908 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGGGAAGAC TGCAGTATTC TAGTATTTTA AGCAACTTTG CAGCATGTAT GATGGCAAAA 310 ATTGAAAATT ATGTCTTGGA TATTTGCAGA TTTTGTTATT TGTTTCCTGC AGGTGAAATG 1848 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTGAAAATT ATGTCTTGGA TATTTGCAGA TTTTGTTATT TGTTTCCTGC AGGTGAAATG 370 CTACTTATGT AATGACATTG TCTGCACTCT TGTGACTTTG TAAGTTCTTT TCCTG 1793 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||| CTACTTATGT AATGACATTG TCTGCACTCT TGTGACTTTG TAAGTTCTTT TCCTG 425 hqPGS_C06HBa0024L21.1-4-_SGN-E345135+ (2327 2258,2147 1793) ******************************************************************************** EST sequence 7 -strand 808 n (File: SGN-E554369-) 1 GGAAAGAGTG GTAGCCGTAG CCGCAGTCGA AGTTACAGTC GCAGCCGGAG CAGAAGCAAA 61 TCTCCTAAAG CTAAGTCGTC AAAGCGTACA AGATCTCGTT CTAGATCTGT CTCTTCTCAG 121 CCCCGTTCTG GGTTAAAAGG ACGCTCTTTG TCAAGATCTC CATCAAGATC CAGATCCCCA 181 GTACCATCTC GCCCAAAACG TGTGAGCAAA AGCCCAAAAC CTCGCGACTC CAGGAGAAGC 241 CAGAGCTTGA GTAAAAGCCC AAAACCTCGT GATTCCAGGA GAAGCGAGAG TCCAAGCAAG 301 AGCCCCAAAC TGCGTGATTC CAGGAGAAGC AAGAGCATGA GTAAAAGCCC CGAACCACGC 361 AATTCCAGGA GGAGCCCCAG CAGGAGCAAA AGCCCCAAAC CACGCAATTC CAGGAGAAGC 421 CCTAGCAGGA GCCGCAGCCG GAGTCGCAGT GGGAGTTTGT CGAGGTGAGA GCTATATTGT 481 GGATTAAGCT GTTGCTGCAG GTGCGGAGAT AGAGAGTGTG CTGCTGTGCC TGAATAGAGC 541 AGCTGAGCTG TTGGTGTCAT CTTTTCCGAT AACTAGTCCT GATGAATGGC TTCTGAATTT 601 TTTGGTCCAT GACCAAAATA GAACTCAACT GTGAACCTTT GACTTGGGGA AGACTGCAGT 661 ATTCTAGTAT TTTAAGCAAC TTTGCAGCAT GTATGATGGC AAAAATTGAA AATTATGTCT 721 TGGATATTTG CAGATTTTGT TATTTGTTTC CTGCAGGTGA AATGCTACTT ATGTAATGAC 781 ATTGTCTGCA CTCTTGTGAC TTTGTAAC Predicted gene structure (within gDNA segment 5326 to 1195): Exon 1 4716 4661 ( 56 n); cDNA 1 56 ( 56 n); score: 1.000 Intron 1 4660 4573 ( 88 n); Pd: 1.000 (s: 1.00), Pa: 0.429 (s: 1.00) Exon 2 4572 4474 ( 99 n); cDNA 57 155 ( 99 n); score: 1.000 Intron 2 4473 2739 (1735 n); Pd: 0.995 (s: 1.00), Pa: 0.876 (s: 0) Exon 3 2738 2705 ( 34 n); cDNA 156 189 ( 34 n); score: 1.000 Intron 3 2704 2533 ( 172 n); Pd: 0.996 (s: 0), Pa: 0.978 (s: 1.00) Exon 4 2532 2258 ( 275 n); cDNA 190 464 ( 275 n); score: 1.000 Intron 4 2257 2148 ( 110 n); Pd: 0.723 (s: 1.00), Pa: 0.997 (s: 1.00) Exon 5 2147 1805 ( 343 n); cDNA 465 807 ( 343 n); score: 1.000 MATCH C06HBa0024L21.1-4- SGN-E554369- 1.000 807 0.999 C PGS_C06HBa0024L21.1-4-_SGN-E554369- (4716 4661,4572 4474,2738 2705,2532 2258,2147 1805) Alignment (genomic DNA sequence = upper lines): GGAAAGAGTG GTAGCCGTAG CCGCAGTCGA AGTTACAGTC GCAGCCGGAG CAGAAGGTAT 4657 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||| GGAAAGAGTG GTAGCCGTAG CCGCAGTCGA AGTTACAGTC GCAGCCGGAG CAGAAG.... 56 GTATTATGTA GTTTGCACGT TTTATAGCTT GTTACTTCAC CTTTGAATGC TACTATGTAT 4597 .......... .......... .......... .......... .......... .......... 56 CTCATTGCTG CTCTTTCCTA GCAGCAAATC TCCTAAAGCT AAGTCGTCAA AGCGTACAAG 4537 |||||| |||||||||| |||||||||| |||||||||| .......... .......... ....CAAATC TCCTAAAGCT AAGTCGTCAA AGCGTACAAG 92 ATCTCGTTCT AGATCTGTCT CTTCTCAGCC CCGTTCTGGG TTAAAAGGAC GCTCTTTGTC 4477 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCTCGTTCT AGATCTGTCT CTTCTCAGCC CCGTTCTGGG TTAAAAGGAC GCTCTTTGTC 152 AAGGTAATCT TTCTTACTGG TCATATCTAC CCATTTTGTT GTTGGGGCAG GTTATGTAAA 4417 ||| AAG....... .......... .......... .......... .......... .......... 155 AGTAGCATAT AGTACAAGGT TAATGTATAT TTTTATGCAA GTCCTTGTAC TGGTCTTTTT 4357 .......... .......... .......... .......... .......... .......... 155 TTGAGTCAAA AGTCCTTGTG TCTATCAGTT TATCTTAATC ATTTTAATCT TTTCTTTGTG 4297 .......... .......... .......... .......... .......... .......... 155 AAAGCCACCT GGGAATTAAC TGTTGCATCT TGCACCTCAT TTATTTAGTG GGAAATCAGC 4237 .......... .......... .......... .......... .......... .......... 155 TGAGCACTTT GTTTCCAACC CTTAATCTTG ACTAGACTTT GTATAGTTGT GGACATGAGA 4177 .......... .......... .......... .......... .......... .......... 155 TGGCTTTGAA GCAAAAAGTT GTTTTGCAGT GTGACCAATT TAACATTTTC ACACAAGTTG 4117 .......... .......... .......... .......... .......... .......... 155 GTTGTAAATT TCACAAATTC AAATTGCAAA TTGCATCTGC AAAATGATTT CAATTGTTCC 4057 .......... .......... .......... .......... .......... .......... 155 TCCTTTTTGA TTTTTCGAGA AGCATTATAT TGGTTGTACA TTATTTATGA TTGATGTGGT 3997 .......... .......... .......... .......... .......... .......... 155 AAGTCTTGGC CCGACAACGG CCTTCTTTCC CATATATAGA GTAACAGATC ATGTGTACTG 3937 .......... .......... .......... .......... .......... .......... 155 CGTATGAACA TTAAGGTTCT GATCCCTCAT TCAGTTTGGA TCAATATCGT CCTTCCAAAA 3877 .......... .......... .......... .......... .......... .......... 155 TTGTAAGTGA ACCTTTTGGA AATTTGTCAA GATTCTAGAT CAACGTGCAA TGGCTCAGTG 3817 .......... .......... .......... .......... .......... .......... 155 GGTAACTAAG CTGTCATTAG CTAATATGGT GCTCGTATTG TAGTTTTAAT AGGCTTTATA 3757 .......... .......... .......... .......... .......... .......... 155 TTATGGTGAG GTACAATTCT GCATCTTTTT TGGTGGCATA GAGATAGCCA ATGTTAATTT 3697 .......... .......... .......... .......... .......... .......... 155 CATTCTGCTT CAGGGTGTCT CCGTCCAAAA AAACCCAGTC TGCTTCAGGG TGATAGATCT 3637 .......... .......... .......... .......... .......... .......... 155 TTTTGAACCT AAGCAATGTC AAACCATTTG ATAAACCAGA CAAGCTAGGG AACATCACAA 3577 .......... .......... .......... .......... .......... .......... 155 GTGCAGAGTC CTGTACATCA GGATTGTTCT TCTTCTTCTA ATTATGCTGT GTCTAACTGT 3517 .......... .......... .......... .......... .......... .......... 155 AATTGCGGCT ATCAAATATG TGGTCAACTG GTCATTCAGT TATGAAAAGA TGTCTAGATA 3457 .......... .......... .......... .......... .......... .......... 155 CTGCATTTCA GAATCCATTA GGAACAAAAT AGTTGTTGGG TGTTGGATGT AGAAGTTGGT 3397 .......... .......... .......... .......... .......... .......... 155 TCTTCCTATG CTTCTTGTGA CTTTTGCATT TTGGAAATGT CGGGAAAATA TTCTGTGTTG 3337 .......... .......... .......... .......... .......... .......... 155 TCAAGGTATC ATTTATTATT TCCTTTGTAA ATATGAGAAA TCACATTGTT GGTTTTTCTA 3277 .......... .......... .......... .......... .......... .......... 155 GATGTTGGAT TTATACGAGG ATCTTGGAAT GCATATTAGG ATCTTGAGTG GATATGGTCT 3217 .......... .......... .......... .......... .......... .......... 155 TGCCTACAAC AAATGTTGTT GTGGAGGTAT GCTGTTTTCT AGATGGCAGC TTCGGAATCT 3157 .......... .......... .......... .......... .......... .......... 155 TTTATGGTGT CTCTCCTCTA ATGAGCATCA TGAAATGTCC ATCGATGCTA AGATTGGGAA 3097 .......... .......... .......... .......... .......... .......... 155 CAAGAAGATC ATGGATTTTG ATGGTCAAGC TGGAGTGGCA TACTAGAACT TCACTTTGAA 3037 .......... .......... .......... .......... .......... .......... 155 TTTGGGATCG CCATCTGGCA AGCTAATAAG ACACTAATTG GTTCTTTCAC TTCCTGTTAA 2977 .......... .......... .......... .......... .......... .......... 155 TTGGTCTTTA AACAACACAA ACTTAAATTA TTGACTAGAA CTCTTCCTTA ACTAGGTAAC 2917 .......... .......... .......... .......... .......... .......... 155 TTGCATGGCT TCATACTTGT CATTGTTTTC TCTTTGGGAT GGTGAAATGG TAACGGGTTT 2857 .......... .......... .......... .......... .......... .......... 155 CTGCATGTCT ACTTTGATTA TGGCCACTCC GACGTGGAAG TGGCATCAAG GCAGTCGGAT 2797 .......... .......... .......... .......... .......... .......... 155 GAAAGTTGTT AAGCGGAAGG TTGGATATTA AATTGAGTTG TTTCTGGACA TTTTGCAGAT 2737 || .......... .......... .......... .......... .......... ........AT 157 CTCCATCAAG ATCCAGATCC CCAGTACCAT CTGTAAGTCA AATGACTCTT CTAAGATAAA 2677 |||||||||| |||||||||| |||||||||| || CTCCATCAAG ATCCAGATCC CCAGTACCAT CT........ .......... .......... 189 AATGAAAGCT TGGAATTATT GTATCTGGCG GTAGAACTAT TTTGTCTTAT TACATTTGTA 2617 .......... .......... .......... .......... .......... .......... 189 TTAAGTTATT TGAATTACAT TCTTTTTTAC TTCGAATCCT CTCTTTGTTT GTTGGCATTT 2557 .......... .......... .......... .......... .......... .......... 189 TATATTTGGC TGGATTGGTC TCAGCGCCCA AAACGTGTGA GCAAAAGCCC AAAACCTCGC 2497 |||||| |||||||||| |||||||||| |||||||||| .......... .......... ....CGCCCA AAACGTGTGA GCAAAAGCCC AAAACCTCGC 225 GACTCCAGGA GAAGCCAGAG CTTGAGTAAA AGCCCAAAAC CTCGTGATTC CAGGAGAAGC 2437 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GACTCCAGGA GAAGCCAGAG CTTGAGTAAA AGCCCAAAAC CTCGTGATTC CAGGAGAAGC 285 GAGAGTCCAA GCAAGAGCCC CAAACTGCGT GATTCCAGGA GAAGCAAGAG CATGAGTAAA 2377 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGAGTCCAA GCAAGAGCCC CAAACTGCGT GATTCCAGGA GAAGCAAGAG CATGAGTAAA 345 AGCCCCGAAC CACGCAATTC CAGGAGGAGC CCCAGCAGGA GCAAAAGCCC CAAACCACGC 2317 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCCCCGAAC CACGCAATTC CAGGAGGAGC CCCAGCAGGA GCAAAAGCCC CAAACCACGC 405 AATTCCAGGA GAAGCCCTAG CAGGAGCCGC AGCCGGAGTC GCAGTGGGAG TTTGTCGAGG 2257 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| AATTCCAGGA GAAGCCCTAG CAGGAGCCGC AGCCGGAGTC GCAGTGGGAG TTTGTCGAG. 464 TCTTCTTGCT CATCTGTTTT TTTTTTTGTA GATTAATGAA CAGTCATCCA GTTGCTTGAG 2197 .......... .......... .......... .......... .......... .......... 464 GCATAACATA TCATTGCTAT TTTGTTGACT ATTGATTACA ATTTTACAGG TGAGAGCTAT 2137 | |||||||||| .......... .......... .......... .......... .........G TGAGAGCTAT 475 ATTGTGGATT AAGCTGTTGC TGCAGGTGCG GAGATAGAGA GTGTGCTGCT GTGCCTGAAT 2077 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTGTGGATT AAGCTGTTGC TGCAGGTGCG GAGATAGAGA GTGTGCTGCT GTGCCTGAAT 535 AGAGCAGCTG AGCTGTTGGT GTCATCTTTT CCGATAACTA GTCCTGATGA ATGGCTTCTG 2017 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAGCAGCTG AGCTGTTGGT GTCATCTTTT CCGATAACTA GTCCTGATGA ATGGCTTCTG 595 AATTTTTTGG TCCATGACCA AAATAGAACT CAACTGTGAA CCTTTGACTT GGGGAAGACT 1957 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATTTTTTGG TCCATGACCA AAATAGAACT CAACTGTGAA CCTTTGACTT GGGGAAGACT 655 GCAGTATTCT AGTATTTTAA GCAACTTTGC AGCATGTATG ATGGCAAAAA TTGAAAATTA 1897 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCAGTATTCT AGTATTTTAA GCAACTTTGC AGCATGTATG ATGGCAAAAA TTGAAAATTA 715 TGTCTTGGAT ATTTGCAGAT TTTGTTATTT GTTTCCTGCA GGTGAAATGC TACTTATGTA 1837 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTCTTGGAT ATTTGCAGAT TTTGTTATTT GTTTCCTGCA GGTGAAATGC TACTTATGTA 775 ATGACATTGT CTGCACTCTT GTGACTTTGT AA 1805 |||||||||| |||||||||| |||||||||| || ATGACATTGT CTGCACTCTT GTGACTTTGT AA 807 hqPGS_C06HBa0024L21.1-4-_SGN-E554369- (4716 4661,4572 4474,2738 2705,2532 2258,2147 1805) ******************************************************************************** EST sequence 47 +strand 533 n (File: SGN-E208084+) 1 CAAAACGTGT GAGCAAAAGC CCAAAACCTC GCGACTCCAG GAGAAGCCAG AGCTTGAGTA 61 AAAGCCCAAA ACCTCGTGAT TCCAGGAGAA GCGAGAGTCC AAGCAAGAGC CCCAAACTGC 121 GTGATTCCAG GAGAAGCAAG AGCATGAGTA AAAGCCCCGA ACCACGCAAT TCCAGGAGGA 181 GCCCCAGCAG GAGCAAAAGC CCCAAACCAC GCAATTCCAG GAGAAGCCCT AGCAGGAGCC 241 GCAGCCGGAG TCGCAGTGGG AGTTTGTCGA GGTGAGAGCT ATATTGTGGA TTAAGCTGTT 301 GCTGCAGGTG CGGAGATAGA GAGTGTGCTG CTGTGCCTGA ATAGAGCAGC TGAGCTGTTG 361 GTGTCATCTT TTCCGATAAC TAGTCCTGAT GAATGGCTTC TGAATTTTTT GGTCCATGAC 421 CAAAATAGAA CTCAACTGTG AACCTTTGAC TTGGGGAAGA CTGCAGTATT CTAGTATTTT 481 AAGCAACTTT GCAGCATGTA TGATGGCAAA AATTGAAAAT TATGTCTTGG ATA Predicted gene structure (within gDNA segment 3128 to 1276): Exon 1 2528 2258 ( 271 n); cDNA 1 271 ( 271 n); score: 1.000 Intron 1 2257 2148 ( 110 n); Pd: 0.723 (s: 1.00), Pa: 0.997 (s: 1.00) Exon 2 2147 1886 ( 262 n); cDNA 272 533 ( 262 n); score: 1.000 MATCH C06HBa0024L21.1-4- SGN-E208084+ 1.000 533 1.000 C PGS_C06HBa0024L21.1-4-_SGN-E208084+ (2528 2258,2147 1886) Alignment (genomic DNA sequence = upper lines): CAAAACGTGT GAGCAAAAGC CCAAAACCTC GCGACTCCAG GAGAAGCCAG AGCTTGAGTA 2469 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAAACGTGT GAGCAAAAGC CCAAAACCTC GCGACTCCAG GAGAAGCCAG AGCTTGAGTA 60 AAAGCCCAAA ACCTCGTGAT TCCAGGAGAA GCGAGAGTCC AAGCAAGAGC CCCAAACTGC 2409 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAGCCCAAA ACCTCGTGAT TCCAGGAGAA GCGAGAGTCC AAGCAAGAGC CCCAAACTGC 120 GTGATTCCAG GAGAAGCAAG AGCATGAGTA AAAGCCCCGA ACCACGCAAT TCCAGGAGGA 2349 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGATTCCAG GAGAAGCAAG AGCATGAGTA AAAGCCCCGA ACCACGCAAT TCCAGGAGGA 180 GCCCCAGCAG GAGCAAAAGC CCCAAACCAC GCAATTCCAG GAGAAGCCCT AGCAGGAGCC 2289 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCCCCAGCAG GAGCAAAAGC CCCAAACCAC GCAATTCCAG GAGAAGCCCT AGCAGGAGCC 240 GCAGCCGGAG TCGCAGTGGG AGTTTGTCGA GGTCTTCTTG CTCATCTGTT TTTTTTTTTG 2229 |||||||||| |||||||||| |||||||||| | GCAGCCGGAG TCGCAGTGGG AGTTTGTCGA G......... .......... .......... 271 TAGATTAATG AACAGTCATC CAGTTGCTTG AGGCATAACA TATCATTGCT ATTTTGTTGA 2169 .......... .......... .......... .......... .......... .......... 271 CTATTGATTA CAATTTTACA GGTGAGAGCT ATATTGTGGA TTAAGCTGTT GCTGCAGGTG 2109 ||||||||| |||||||||| |||||||||| |||||||||| .......... .......... .GTGAGAGCT ATATTGTGGA TTAAGCTGTT GCTGCAGGTG 310 CGGAGATAGA GAGTGTGCTG CTGTGCCTGA ATAGAGCAGC TGAGCTGTTG GTGTCATCTT 2049 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGGAGATAGA GAGTGTGCTG CTGTGCCTGA ATAGAGCAGC TGAGCTGTTG GTGTCATCTT 370 TTCCGATAAC TAGTCCTGAT GAATGGCTTC TGAATTTTTT GGTCCATGAC CAAAATAGAA 1989 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCCGATAAC TAGTCCTGAT GAATGGCTTC TGAATTTTTT GGTCCATGAC CAAAATAGAA 430 CTCAACTGTG AACCTTTGAC TTGGGGAAGA CTGCAGTATT CTAGTATTTT AAGCAACTTT 1929 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCAACTGTG AACCTTTGAC TTGGGGAAGA CTGCAGTATT CTAGTATTTT AAGCAACTTT 490 GCAGCATGTA TGATGGCAAA AATTGAAAAT TATGTCTTGG ATA 1886 |||||||||| |||||||||| |||||||||| |||||||||| ||| GCAGCATGTA TGATGGCAAA AATTGAAAAT TATGTCTTGG ATA 533 hqPGS_C06HBa0024L21.1-4-_SGN-E208084+ (2528 2258,2147 1886) ******************************************************************************** EST sequence 10 -strand 716 n (File: SGN-E542930-) 1 GTTTTCTCTT GGGGATGGTG AAATGGTAAC GGGTTTCTGC ATGTCTACTT TGATATTGGC 61 CACTCCGACG TGGAAGTGGC ATCAAGGCAG TCGGATGAAA GTTGTTAAGC GGAAGGTTGG 121 ATATTAAATT GAGTTGTTTC TGGACATTTT GCAGATCTCC ATCAAGATCC AGATCCCCAG 181 TACCATCTCG CCCAAAACGT GTGAGCAAAA GCCCAAAACC TCGCGACTCC AGGAGAAGCC 241 AGAGCTTGAG TAAAAGCCCA AAACCTCGTG ATTCCAGGAG AAGCGAGAGT CCAAGCAAGA 301 GCCCCAAACT GCGTGATTCC AGGAGAAGCA AGAGCATGAG TAAAAGCCCC GAACCACGCA 361 ATTCCAGGAG GAGCCCCTGC AGGAGCAAAA GCCCCAAACC ACGCAATTCC AGGAGAAGCC 421 CTAGCAGGAG CCGCAGCCGG AGTCGCAGTG GGAGTTTGTC GAGGTGAGAG CTATATTGTG 481 GATTAAGCTG TTGCTGCAGG TGCGGAGATA GAGAGTGTGC TGCTGTGCCT GAATAGAGCA 541 GCTGAGCTGT TGGTGTCATC TTTTCCGATA ACTAGTCCTG ATGAATGGCT TCTGAATTTT 601 TTGGTCCATG ACCAAAATAG AACTCAACTG TGAACCTTTG ACTTGGGGAA GACTGCAGTA 661 TTCTAGTATT TTAAGCAACT TTGCAGCATG TATGATGGCA AAAATGAAAA AAAAAA Predicted gene structure (within gDNA segment 3601 to 1196): Exon 1 2892 2705 ( 188 n); cDNA 1 188 ( 188 n); score: 0.984 Intron 1 2704 2533 ( 172 n); Pd: 0.996 (s: 1.00), Pa: 0.978 (s: 1.00) Exon 2 2532 2258 ( 275 n); cDNA 189 463 ( 275 n); score: 0.996 Intron 2 2257 2148 ( 110 n); Pd: 0.723 (s: 1.00), Pa: 0.997 (s: 1.00) Exon 3 2147 1900 ( 248 n); cDNA 464 711 ( 248 n); score: 0.992 MATCH C06HBa0024L21.1-4- SGN-E542930- 0.992 711 0.993 C PGS_C06HBa0024L21.1-4-_SGN-E542930- (2892 2705,2532 2258,2147 1900) Alignment (genomic DNA sequence = upper lines): GTTTTCTCTT TGGGATGGTG AAATGGTAAC GGGTTTCTGC ATGTCTACTT TGATTATGGC 2833 |||||||||| ||||||||| |||||||||| |||||||||| |||||||||| |||| |||| GTTTTCTCTT GGGGATGGTG AAATGGTAAC GGGTTTCTGC ATGTCTACTT TGATATTGGC 60 CACTCCGACG TGGAAGTGGC ATCAAGGCAG TCGGATGAAA GTTGTTAAGC GGAAGGTTGG 2773 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CACTCCGACG TGGAAGTGGC ATCAAGGCAG TCGGATGAAA GTTGTTAAGC GGAAGGTTGG 120 ATATTAAATT GAGTTGTTTC TGGACATTTT GCAGATCTCC ATCAAGATCC AGATCCCCAG 2713 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATATTAAATT GAGTTGTTTC TGGACATTTT GCAGATCTCC ATCAAGATCC AGATCCCCAG 180 TACCATCTGT AAGTCAAATG ACTCTTCTAA GATAAAAATG AAAGCTTGGA ATTATTGTAT 2653 |||||||| TACCATCT.. .......... .......... .......... .......... .......... 188 CTGGCGGTAG AACTATTTTG TCTTATTACA TTTGTATTAA GTTATTTGAA TTACATTCTT 2593 .......... .......... .......... .......... .......... .......... 188 TTTTACTTCG AATCCTCTCT TTGTTTGTTG GCATTTTATA TTTGGCTGGA TTGGTCTCAG 2533 .......... .......... .......... .......... .......... .......... 188 CGCCCAAAAC GTGTGAGCAA AAGCCCAAAA CCTCGCGACT CCAGGAGAAG CCAGAGCTTG 2473 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGCCCAAAAC GTGTGAGCAA AAGCCCAAAA CCTCGCGACT CCAGGAGAAG CCAGAGCTTG 248 AGTAAAAGCC CAAAACCTCG TGATTCCAGG AGAAGCGAGA GTCCAAGCAA GAGCCCCAAA 2413 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTAAAAGCC CAAAACCTCG TGATTCCAGG AGAAGCGAGA GTCCAAGCAA GAGCCCCAAA 308 CTGCGTGATT CCAGGAGAAG CAAGAGCATG AGTAAAAGCC CCGAACCACG CAATTCCAGG 2353 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGCGTGATT CCAGGAGAAG CAAGAGCATG AGTAAAAGCC CCGAACCACG CAATTCCAGG 368 AGGAGCCCCA GCAGGAGCAA AAGCCCCAAA CCACGCAATT CCAGGAGAAG CCCTAGCAGG 2293 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGAGCCCCT GCAGGAGCAA AAGCCCCAAA CCACGCAATT CCAGGAGAAG CCCTAGCAGG 428 AGCCGCAGCC GGAGTCGCAG TGGGAGTTTG TCGAGGTCTT CTTGCTCATC TGTTTTTTTT 2233 |||||||||| |||||||||| |||||||||| ||||| AGCCGCAGCC GGAGTCGCAG TGGGAGTTTG TCGAG..... .......... .......... 463 TTTGTAGATT AATGAACAGT CATCCAGTTG CTTGAGGCAT AACATATCAT TGCTATTTTG 2173 .......... .......... .......... .......... .......... .......... 463 TTGACTATTG ATTACAATTT TACAGGTGAG AGCTATATTG TGGATTAAGC TGTTGCTGCA 2113 ||||| |||||||||| |||||||||| |||||||||| .......... .......... .....GTGAG AGCTATATTG TGGATTAAGC TGTTGCTGCA 498 GGTGCGGAGA TAGAGAGTGT GCTGCTGTGC CTGAATAGAG CAGCTGAGCT GTTGGTGTCA 2053 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGTGCGGAGA TAGAGAGTGT GCTGCTGTGC CTGAATAGAG CAGCTGAGCT GTTGGTGTCA 558 TCTTTTCCGA TAACTAGTCC TGATGAATGG CTTCTGAATT TTTTGGTCCA TGACCAAAAT 1993 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTTTTCCGA TAACTAGTCC TGATGAATGG CTTCTGAATT TTTTGGTCCA TGACCAAAAT 618 AGAACTCAAC TGTGAACCTT TGACTTGGGG AAGACTGCAG TATTCTAGTA TTTTAAGCAA 1933 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAACTCAAC TGTGAACCTT TGACTTGGGG AAGACTGCAG TATTCTAGTA TTTTAAGCAA 678 CTTTGCAGCA TGTATGATGG CAAAAATTGA AAA 1900 |||||||||| |||||||||| ||||||| | ||| CTTTGCAGCA TGTATGATGG CAAAAATGAA AAA 711 hqPGS_C06HBa0024L21.1-4-_SGN-E542930- (2892 2705,2532 2258,2147 1900) ******************************************************************************** EST sequence 36 +strand 514 n (File: SGN-E336629+) 1 CCATCTCGCC CAAAACGTGT GAGCAAAAGC CCAAAACCTC GCGACTCCAG GAGAAGCCAG 61 AGCTTGAGTA AAAGCCCAAA ACCTCGTGAT TCCAGGAGAA GCGAGAGTCC AAGCAAGAGC 121 CCCAAACTGC GTGATTCCAG GAGAAGCAAG AGCATGAGTA AAAGCCCCGA ACCACGCAAT 181 TCCAGGAGGA GCCCCAGCAG GAGCAAAAGC CCCAAACCAC GCAATTCCAG GAGAAGCCCT 241 AGCAGGAGCC GCAGCCGGAG TCGCAGTGGG AGTTTGTCGA GGTGAGAGCT ATATTGTGGA 301 TTAAGCTGTT GCTGCAGGTG CGGAGATAGA GAGTGTGCTG CTGTGCCTGA ATAGAGCAGC 361 TGAGCTGTTG GTGTCATCTT TTCCGATAAC TAGTCCTGAT GAATGGCTTC TGAATTTTTT 421 GGTCCATGAC CAAAATAGAA CTCAACTGTG AACCTTTGAC TTGGGGAAGA CTGCAGTATT 481 CTAGTATTTT AAGCAACTTT GCAGCATGTA TGAT Predicted gene structure (within gDNA segment 3192 to 1305): Exon 1 2710 2705 ( 6 n); cDNA 1 6 ( 6 n); score: 1.000 Intron 1 2704 2533 ( 172 n); Pd: 0.996 (s: 0), Pa: 0.978 (s: 1.00) Exon 2 2532 2258 ( 275 n); cDNA 7 281 ( 275 n); score: 1.000 Intron 2 2257 2148 ( 110 n); Pd: 0.723 (s: 1.00), Pa: 0.997 (s: 1.00) Exon 3 2147 1915 ( 233 n); cDNA 282 514 ( 233 n); score: 1.000 MATCH C06HBa0024L21.1-4- SGN-E336629+ 1.000 514 1.000 C PGS_C06HBa0024L21.1-4-_SGN-E336629+ (2710 2705,2532 2258,2147 1915) Alignment (genomic DNA sequence = upper lines): CCATCTGTAA GTCAAATGAC TCTTCTAAGA TAAAAATGAA AGCTTGGAAT TATTGTATCT 2651 |||||| CCATCT.... .......... .......... .......... .......... .......... 6 GGCGGTAGAA CTATTTTGTC TTATTACATT TGTATTAAGT TATTTGAATT ACATTCTTTT 2591 .......... .......... .......... .......... .......... .......... 6 TTACTTCGAA TCCTCTCTTT GTTTGTTGGC ATTTTATATT TGGCTGGATT GGTCTCAGCG 2531 || .......... .......... .......... .......... .......... ........CG 8 CCCAAAACGT GTGAGCAAAA GCCCAAAACC TCGCGACTCC AGGAGAAGCC AGAGCTTGAG 2471 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCCAAAACGT GTGAGCAAAA GCCCAAAACC TCGCGACTCC AGGAGAAGCC AGAGCTTGAG 68 TAAAAGCCCA AAACCTCGTG ATTCCAGGAG AAGCGAGAGT CCAAGCAAGA GCCCCAAACT 2411 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAAAAGCCCA AAACCTCGTG ATTCCAGGAG AAGCGAGAGT CCAAGCAAGA GCCCCAAACT 128 GCGTGATTCC AGGAGAAGCA AGAGCATGAG TAAAAGCCCC GAACCACGCA ATTCCAGGAG 2351 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCGTGATTCC AGGAGAAGCA AGAGCATGAG TAAAAGCCCC GAACCACGCA ATTCCAGGAG 188 GAGCCCCAGC AGGAGCAAAA GCCCCAAACC ACGCAATTCC AGGAGAAGCC CTAGCAGGAG 2291 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGCCCCAGC AGGAGCAAAA GCCCCAAACC ACGCAATTCC AGGAGAAGCC CTAGCAGGAG 248 CCGCAGCCGG AGTCGCAGTG GGAGTTTGTC GAGGTCTTCT TGCTCATCTG TTTTTTTTTT 2231 |||||||||| |||||||||| |||||||||| ||| CCGCAGCCGG AGTCGCAGTG GGAGTTTGTC GAG....... .......... .......... 281 TGTAGATTAA TGAACAGTCA TCCAGTTGCT TGAGGCATAA CATATCATTG CTATTTTGTT 2171 .......... .......... .......... .......... .......... .......... 281 GACTATTGAT TACAATTTTA CAGGTGAGAG CTATATTGTG GATTAAGCTG TTGCTGCAGG 2111 ||||||| |||||||||| |||||||||| |||||||||| .......... .......... ...GTGAGAG CTATATTGTG GATTAAGCTG TTGCTGCAGG 318 TGCGGAGATA GAGAGTGTGC TGCTGTGCCT GAATAGAGCA GCTGAGCTGT TGGTGTCATC 2051 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCGGAGATA GAGAGTGTGC TGCTGTGCCT GAATAGAGCA GCTGAGCTGT TGGTGTCATC 378 TTTTCCGATA ACTAGTCCTG ATGAATGGCT TCTGAATTTT TTGGTCCATG ACCAAAATAG 1991 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTTCCGATA ACTAGTCCTG ATGAATGGCT TCTGAATTTT TTGGTCCATG ACCAAAATAG 438 AACTCAACTG TGAACCTTTG ACTTGGGGAA GACTGCAGTA TTCTAGTATT TTAAGCAACT 1931 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACTCAACTG TGAACCTTTG ACTTGGGGAA GACTGCAGTA TTCTAGTATT TTAAGCAACT 498 TTGCAGCATG TATGAT 1915 |||||||||| |||||| TTGCAGCATG TATGAT 514 hqPGS_C06HBa0024L21.1-4-_SGN-E336629+ (2710 2705,2532 2258,2147 1915) ******************************************************************************** EST sequence 5 -strand 359 n (File: SGN-E220834-) 1 ACTTTGCAGC ATGTATGATG GCAAAAATTG AAAATTATGT CTTGGATATT TGCAGATTTT 61 GTTATTTGCT TCCTGCAGGT GAAATGCTAC TTATGTAATG ACATTGTCTG CACTCTTGTG 121 ACTTTGTAAG TTCTTTTCCT GATGTGTGTC TGTTTTCCTG ATGAATTAGG GTAGTAGGGA 181 GGTTGGTGTT TTATGCAACC ATAAGCCCTG GTTTGCCGGT GCCATAGGGC AGTCACCTTT 241 TATCTTTGTG ATTGAAGGAT GTTTATTACC CTTCTGTGAG TTATAACCCT TTCTTATCCC 301 CCTTTGAGAA ATAGAATTGA CTAGTTCACA GAGTTATATC CCCAAAAAAA AAAAAAAAA Predicted gene structure (within gDNA segment 2543 to 813): Exon 1 1933 1599 ( 335 n); cDNA 1 335 ( 335 n); score: 0.988 PPA cDNA 344 359 MATCH C06HBa0024L21.1-4- SGN-E220834- 0.988 335 0.933 C PGS_C06HBa0024L21.1-4-_SGN-E220834- (1933 1599) Alignment (genomic DNA sequence = upper lines): ACTTTGCAGC ATGTATGATG GCAAAAATTG AAAATTATGT CTTGGATATT TGCAGATTTT 1874 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACTTTGCAGC ATGTATGATG GCAAAAATTG AAAATTATGT CTTGGATATT TGCAGATTTT 60 GTTATTTGTT TCCTGCAGGT GAAATGCTAC TTATGTAATG ACATTGTCTG CACTCTTGTG 1814 |||||||| | |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTATTTGCT TCCTGCAGGT GAAATGCTAC TTATGTAATG ACATTGTCTG CACTCTTGTG 120 ACTTTGTAAG TTCTTTTCCT GATGTGTGTC TGTTTTCCTG ATGAATTAGG GTCGTAGGGA 1754 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| || ||||||| ACTTTGTAAG TTCTTTTCCT GATGTGTGTC TGTTTTCCTG ATGAATTAGG GTAGTAGGGA 180 GGTTGGTGTT TTATGCAACC TTAAGCCCTG GTTTGCCGGT GCCATAGGGC AGTCACCTTT 1694 |||||||||| |||||||||| ||||||||| |||||||||| |||||||||| |||||||||| GGTTGGTGTT TTATGCAACC ATAAGCCCTG GTTTGCCGGT GCCATAGGGC AGTCACCTTT 240 TATCTTTGTG ATTGAAGGAT GTTTATTACC CTTCTGTGAG TTATAACCCT TTCTTATCCC 1634 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATCTTTGTG ATTGAAGGAT GTTTATTACC CTTCTGTGAG TTATAACCCT TTCTTATCCC 300 ACTTTGAGAA ATAGAATTGA CTAGTTCACA GAGTT 1599 ||||||||| |||||||||| |||||||||| ||||| CCTTTGAGAA ATAGAATTGA CTAGTTCACA GAGTT 335 hqPGS_C06HBa0024L21.1-4-_SGN-E220834- (1933 1599) ******************************************************************************** EST sequence 4 -strand 246 n (File: SGN-E220905-) 1 TCTTGTGACT TTGTAAGTTC TTTTCCTGAT GTGTGTCTGT TTTCCTGATG AATTAGGGTC 61 GTAGGAAGGT TGGTGTTTTA TGCAACCTTA AGCCCTGGTT TGCCGGTGCC ATAGGGCAGT 121 CACCTTTTAT CTTTGTGATT GAAGGATGTT TATCCCCCAT CTGTGAGTTA TAACCCTTTC 181 TTATCCCACT TTGAGAAATA GAATTGACTA GTTCACAGAG TTATATCCAA AAAAAAAAAA 241 AAAAAA Predicted gene structure (within gDNA segment 2430 to 822): Exon 1 1820 1599 ( 222 n); cDNA 1 222 ( 222 n); score: 0.982 PPA cDNA 229 246 MATCH C06HBa0024L21.1-4- SGN-E220905- 0.982 222 0.902 C PGS_C06HBa0024L21.1-4-_SGN-E220905- (1820 1599) Alignment (genomic DNA sequence = upper lines): TCTTGTGACT TTGTAAGTTC TTTTCCTGAT GTGTGTCTGT TTTCCTGATG AATTAGGGTC 1761 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTTGTGACT TTGTAAGTTC TTTTCCTGAT GTGTGTCTGT TTTCCTGATG AATTAGGGTC 60 GTAGGGAGGT TGGTGTTTTA TGCAACCTTA AGCCCTGGTT TGCCGGTGCC ATAGGGCAGT 1701 ||||| |||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTAGGAAGGT TGGTGTTTTA TGCAACCTTA AGCCCTGGTT TGCCGGTGCC ATAGGGCAGT 120 CACCTTTTAT CTTTGTGATT GAAGGATGTT TATTACCCTT CTGTGAGTTA TAACCCTTTC 1641 |||||||||| |||||||||| |||||||||| ||| ||| | |||||||||| |||||||||| CACCTTTTAT CTTTGTGATT GAAGGATGTT TATCCCCCAT CTGTGAGTTA TAACCCTTTC 180 TTATCCCACT TTGAGAAATA GAATTGACTA GTTCACAGAG TT 1599 |||||||||| |||||||||| |||||||||| |||||||||| || TTATCCCACT TTGAGAAATA GAATTGACTA GTTCACAGAG TT 222 hqPGS_C06HBa0024L21.1-4-_SGN-E220905- (1820 1599) ******************************************************************************** EST sequence 30 +strand 537 n (File: SGN-E201707+) 1 TATGCTATAA AAAAACTTGA TGAATCTGAG TTTCGGAATG CTTTTTCTCG TTCAACAATT 61 CGGGTGAAGG AACATGATTC TAGAAGCCGC ATCCGCAGCC GTTCTTACTC GAGAGGAAAG 121 AGTGGTAGCC GTAGCCGCAG TCGAAGTTAC AGTCGCAGCC GGAGCAGAAG CAAATCTCCT 181 AAAGCTAAGT CGTCAAAGCG TACAAGATCT CGTTCTAGAT CTGGCTCTTC TCAGCCCCGT 241 TCTGGGTTAA AAGGACGCTC TTTGTCAAGA TCTCCATCAA GATCCAGATC CCCAGTACCG 301 TCTCGCCCAA AACGTGTGAG CAAAAGCCCA AAACCTCGCG ACTCCAGGAG AAGCCAGAGC 361 TTGAGTAAAA GCCCAAAACC TCGTGATTCC AGGAGAAGCG AGAGTCCAAG CAAGAGCCCC 421 AAACTGCGTG ATTCCAGGAG AAGCAAGAGC GTGAGTAAAA GCCCCGAACC ACGCAATTCC 481 AGGAGGAGCC CCAGCAGGAG CAAAAGCCCC AAACCACGCA ATTCCAGGAG AAGCCCT Predicted gene structure (within gDNA segment 5598 to 1689): Exon 1 5056 5051 ( 6 n); cDNA 1 6 ( 6 n); score: 1.000 Intron 1 5050 4939 ( 112 n); Pd: 0.999 (s: 0), Pa: 0.959 (s: 1.00) Exon 2 4938 4882 ( 57 n); cDNA 7 63 ( 57 n); score: 1.000 Intron 2 4881 4768 ( 114 n); Pd: 0.871 (s: 1.00), Pa: 0.999 (s: 0.98) Exon 3 4767 4661 ( 107 n); cDNA 64 170 ( 107 n); score: 0.991 Intron 3 4660 4573 ( 88 n); Pd: 1.000 (s: 1.00), Pa: 0.429 (s: 1.00) Exon 4 4572 4474 ( 99 n); cDNA 171 269 ( 99 n); score: 0.990 Intron 4 4473 2739 (1735 n); Pd: 0.995 (s: 0.98), Pa: 0.876 (s: 0) Exon 5 2738 2705 ( 34 n); cDNA 270 303 ( 34 n); score: 0.971 Intron 5 2704 2533 ( 172 n); Pd: 0.996 (s: 0), Pa: 0.978 (s: 1.00) Exon 6 2532 2299 ( 234 n); cDNA 304 537 ( 234 n); score: 0.996 MATCH C06HBa0024L21.1-4- SGN-E201707+ 0.994 537 1.000 C PGS_C06HBa0024L21.1-4-_SGN-E201707+ (5056 5051,4938 4882,4767 4661,4572 4474,2738 2705,2532 2299) Alignment (genomic DNA sequence = upper lines): TATGCTGTAA GCTATCTCCT GTTTCTTATT CTGTATAATT ATCCTCAATT TTTGTTCAAG 4997 |||||| TATGCT.... .......... .......... .......... .......... .......... 6 ATATTTGAAA TATGTTTATG CTCGACTAAC GAGTGTAATT AATTTTCCTT GTATGTAGAT 4937 || .......... .......... .......... .......... .......... ........AT 8 AAAAAAACTT GATGAATCTG AGTTTCGGAA TGCTTTTTCT CGTTCAACAA TTCGGGTATG 4877 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||| AAAAAAACTT GATGAATCTG AGTTTCGGAA TGCTTTTTCT CGTTCAACAA TTCGG..... 63 ATGTGATTAT AACTCAAATG ATATGATTGC AGGATGCTTA GTGCCTTTTC TTTTGTTAGC 4817 .......... .......... .......... .......... .......... .......... 63 CTATACCATT GTCTTATGCT TCATAAAAAT ATTGCTTTGT CTTATGTAGG TGAAGGAACA 4757 | |||||||||| .......... .......... .......... .......... .........G TGAAGGAACA 74 TGATTCTAGA AGCCGCAGCC GCAGCCGTTC TTACTCGAGA GGAAAGAGTG GTAGCCGTAG 4697 |||||||||| ||||||| || |||||||||| |||||||||| |||||||||| |||||||||| TGATTCTAGA AGCCGCATCC GCAGCCGTTC TTACTCGAGA GGAAAGAGTG GTAGCCGTAG 134 CCGCAGTCGA AGTTACAGTC GCAGCCGGAG CAGAAGGTAT GTATTATGTA GTTTGCACGT 4637 |||||||||| |||||||||| |||||||||| |||||| CCGCAGTCGA AGTTACAGTC GCAGCCGGAG CAGAAG.... .......... .......... 170 TTTATAGCTT GTTACTTCAC CTTTGAATGC TACTATGTAT CTCATTGCTG CTCTTTCCTA 4577 .......... .......... .......... .......... .......... .......... 170 GCAGCAAATC TCCTAAAGCT AAGTCGTCAA AGCGTACAAG ATCTCGTTCT AGATCTGTCT 4517 |||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||| || ....CAAATC TCCTAAAGCT AAGTCGTCAA AGCGTACAAG ATCTCGTTCT AGATCTGGCT 226 CTTCTCAGCC CCGTTCTGGG TTAAAAGGAC GCTCTTTGTC AAGGTAATCT TTCTTACTGG 4457 |||||||||| |||||||||| |||||||||| |||||||||| ||| CTTCTCAGCC CCGTTCTGGG TTAAAAGGAC GCTCTTTGTC AAG....... .......... 269 TCATATCTAC CCATTTTGTT GTTGGGGCAG GTTATGTAAA AGTAGCATAT AGTACAAGGT 4397 .......... .......... .......... .......... .......... .......... 269 TAATGTATAT TTTTATGCAA GTCCTTGTAC TGGTCTTTTT TTGAGTCAAA AGTCCTTGTG 4337 .......... .......... .......... .......... .......... .......... 269 TCTATCAGTT TATCTTAATC ATTTTAATCT TTTCTTTGTG AAAGCCACCT GGGAATTAAC 4277 .......... .......... .......... .......... .......... .......... 269 TGTTGCATCT TGCACCTCAT TTATTTAGTG GGAAATCAGC TGAGCACTTT GTTTCCAACC 4217 .......... .......... .......... .......... .......... .......... 269 CTTAATCTTG ACTAGACTTT GTATAGTTGT GGACATGAGA TGGCTTTGAA GCAAAAAGTT 4157 .......... .......... .......... .......... .......... .......... 269 GTTTTGCAGT GTGACCAATT TAACATTTTC ACACAAGTTG GTTGTAAATT TCACAAATTC 4097 .......... .......... .......... .......... .......... .......... 269 AAATTGCAAA TTGCATCTGC AAAATGATTT CAATTGTTCC TCCTTTTTGA TTTTTCGAGA 4037 .......... .......... .......... .......... .......... .......... 269 AGCATTATAT TGGTTGTACA TTATTTATGA TTGATGTGGT AAGTCTTGGC CCGACAACGG 3977 .......... .......... .......... .......... .......... .......... 269 CCTTCTTTCC CATATATAGA GTAACAGATC ATGTGTACTG CGTATGAACA TTAAGGTTCT 3917 .......... .......... .......... .......... .......... .......... 269 GATCCCTCAT TCAGTTTGGA TCAATATCGT CCTTCCAAAA TTGTAAGTGA ACCTTTTGGA 3857 .......... .......... .......... .......... .......... .......... 269 AATTTGTCAA GATTCTAGAT CAACGTGCAA TGGCTCAGTG GGTAACTAAG CTGTCATTAG 3797 .......... .......... .......... .......... .......... .......... 269 CTAATATGGT GCTCGTATTG TAGTTTTAAT AGGCTTTATA TTATGGTGAG GTACAATTCT 3737 .......... .......... .......... .......... .......... .......... 269 GCATCTTTTT TGGTGGCATA GAGATAGCCA ATGTTAATTT CATTCTGCTT CAGGGTGTCT 3677 .......... .......... .......... .......... .......... .......... 269 CCGTCCAAAA AAACCCAGTC TGCTTCAGGG TGATAGATCT TTTTGAACCT AAGCAATGTC 3617 .......... .......... .......... .......... .......... .......... 269 AAACCATTTG ATAAACCAGA CAAGCTAGGG AACATCACAA GTGCAGAGTC CTGTACATCA 3557 .......... .......... .......... .......... .......... .......... 269 GGATTGTTCT TCTTCTTCTA ATTATGCTGT GTCTAACTGT AATTGCGGCT ATCAAATATG 3497 .......... .......... .......... .......... .......... .......... 269 TGGTCAACTG GTCATTCAGT TATGAAAAGA TGTCTAGATA CTGCATTTCA GAATCCATTA 3437 .......... .......... .......... .......... .......... .......... 269 GGAACAAAAT AGTTGTTGGG TGTTGGATGT AGAAGTTGGT TCTTCCTATG CTTCTTGTGA 3377 .......... .......... .......... .......... .......... .......... 269 CTTTTGCATT TTGGAAATGT CGGGAAAATA TTCTGTGTTG TCAAGGTATC ATTTATTATT 3317 .......... .......... .......... .......... .......... .......... 269 TCCTTTGTAA ATATGAGAAA TCACATTGTT GGTTTTTCTA GATGTTGGAT TTATACGAGG 3257 .......... .......... .......... .......... .......... .......... 269 ATCTTGGAAT GCATATTAGG ATCTTGAGTG GATATGGTCT TGCCTACAAC AAATGTTGTT 3197 .......... .......... .......... .......... .......... .......... 269 GTGGAGGTAT GCTGTTTTCT AGATGGCAGC TTCGGAATCT TTTATGGTGT CTCTCCTCTA 3137 .......... .......... .......... .......... .......... .......... 269 ATGAGCATCA TGAAATGTCC ATCGATGCTA AGATTGGGAA CAAGAAGATC ATGGATTTTG 3077 .......... .......... .......... .......... .......... .......... 269 ATGGTCAAGC TGGAGTGGCA TACTAGAACT TCACTTTGAA TTTGGGATCG CCATCTGGCA 3017 .......... .......... .......... .......... .......... .......... 269 AGCTAATAAG ACACTAATTG GTTCTTTCAC TTCCTGTTAA TTGGTCTTTA AACAACACAA 2957 .......... .......... .......... .......... .......... .......... 269 ACTTAAATTA TTGACTAGAA CTCTTCCTTA ACTAGGTAAC TTGCATGGCT TCATACTTGT 2897 .......... .......... .......... .......... .......... .......... 269 CATTGTTTTC TCTTTGGGAT GGTGAAATGG TAACGGGTTT CTGCATGTCT ACTTTGATTA 2837 .......... .......... .......... .......... .......... .......... 269 TGGCCACTCC GACGTGGAAG TGGCATCAAG GCAGTCGGAT GAAAGTTGTT AAGCGGAAGG 2777 .......... .......... .......... .......... .......... .......... 269 TTGGATATTA AATTGAGTTG TTTCTGGACA TTTTGCAGAT CTCCATCAAG ATCCAGATCC 2717 || |||||||||| |||||||||| .......... .......... .......... ........AT CTCCATCAAG ATCCAGATCC 291 CCAGTACCAT CTGTAAGTCA AATGACTCTT CTAAGATAAA AATGAAAGCT TGGAATTATT 2657 |||||||| | || CCAGTACCGT CT........ .......... .......... .......... .......... 303 GTATCTGGCG GTAGAACTAT TTTGTCTTAT TACATTTGTA TTAAGTTATT TGAATTACAT 2597 .......... .......... .......... .......... .......... .......... 303 TCTTTTTTAC TTCGAATCCT CTCTTTGTTT GTTGGCATTT TATATTTGGC TGGATTGGTC 2537 .......... .......... .......... .......... .......... .......... 303 TCAGCGCCCA AAACGTGTGA GCAAAAGCCC AAAACCTCGC GACTCCAGGA GAAGCCAGAG 2477 |||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ....CGCCCA AAACGTGTGA GCAAAAGCCC AAAACCTCGC GACTCCAGGA GAAGCCAGAG 359 CTTGAGTAAA AGCCCAAAAC CTCGTGATTC CAGGAGAAGC GAGAGTCCAA GCAAGAGCCC 2417 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTGAGTAAA AGCCCAAAAC CTCGTGATTC CAGGAGAAGC GAGAGTCCAA GCAAGAGCCC 419 CAAACTGCGT GATTCCAGGA GAAGCAAGAG CATGAGTAAA AGCCCCGAAC CACGCAATTC 2357 |||||||||| |||||||||| |||||||||| | |||||||| |||||||||| |||||||||| CAAACTGCGT GATTCCAGGA GAAGCAAGAG CGTGAGTAAA AGCCCCGAAC CACGCAATTC 479 CAGGAGGAGC CCCAGCAGGA GCAAAAGCCC CAAACCACGC AATTCCAGGA GAAGCCCT 2299 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||| CAGGAGGAGC CCCAGCAGGA GCAAAAGCCC CAAACCACGC AATTCCAGGA GAAGCCCT 537 hqPGS_C06HBa0024L21.1-4-_SGN-E201707+ (5056 5051,4938 4882,4767 4661,4572 4474,2738 2705,2532 2299) ******************************************************************************** EST sequence 51 +strand 448 n (File: SGN-E274214+) 1 CTTGATGAAT CTGAGTTTCG GAATGCTTTT TCTCGTTCAA CAATTCGGGT GAAGGAACAT 61 GATTCTAGAA GCCGCAGCCG CAGCCGTTCT TACTCGAGAG GAAAGAGTGG TAGCCGTAGC 121 CGCAGTCGAA GTTACAGTCG CAGCCGGAGC AGAAGCAAAT CTCCTAAAGC TAAGTCGTCA 181 AAGCGTACAA GATCTCGTTC TAGATCTGTC TCTTCTCAGC CCCGTTCTGG GTTAAAAGGA 241 CGCTCTTTGT CAAGATCTCC ATCAAGATCC AGATCCCCAG TACCATCTCG CCCAAAACGT 301 GTGAGCAAAA GCCCAAAACC TCGCGACTCC AGGAGAAGCC AGAGCTTGAG TAAAAGCCCA 361 AAACCTCGTG ATTCCAGGAG AAGCGAGAGT CCAAGCAAGA GCCCCAAACT GCGTGATTCC 421 AGGAGAAGCA AGAGCATGAG TAAAAGCC Predicted gene structure (within gDNA segment 5529 to 1763): Exon 1 4929 4882 ( 48 n); cDNA 1 48 ( 48 n); score: 1.000 Intron 1 4881 4768 ( 114 n); Pd: 0.871 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 2 4767 4661 ( 107 n); cDNA 49 155 ( 107 n); score: 1.000 Intron 2 4660 4573 ( 88 n); Pd: 1.000 (s: 1.00), Pa: 0.429 (s: 1.00) Exon 3 4572 4474 ( 99 n); cDNA 156 254 ( 99 n); score: 1.000 Intron 3 4473 2739 (1735 n); Pd: 0.995 (s: 1.00), Pa: 0.876 (s: 0) Exon 4 2738 2705 ( 34 n); cDNA 255 288 ( 34 n); score: 1.000 Intron 4 2704 2533 ( 172 n); Pd: 0.996 (s: 0), Pa: 0.978 (s: 1.00) Exon 5 2532 2373 ( 160 n); cDNA 289 448 ( 160 n); score: 1.000 MATCH C06HBa0024L21.1-4- SGN-E274214+ 1.000 448 1.000 C PGS_C06HBa0024L21.1-4-_SGN-E274214+ (4929 4882,4767 4661,4572 4474,2738 2705,2532 2373) Alignment (genomic DNA sequence = upper lines): CTTGATGAAT CTGAGTTTCG GAATGCTTTT TCTCGTTCAA CAATTCGGGT ATGATGTGAT 4870 |||||||||| |||||||||| |||||||||| |||||||||| |||||||| CTTGATGAAT CTGAGTTTCG GAATGCTTTT TCTCGTTCAA CAATTCGG.. .......... 48 TATAACTCAA ATGATATGAT TGCAGGATGC TTAGTGCCTT TTCTTTTGTT AGCCTATACC 4810 .......... .......... .......... .......... .......... .......... 48 ATTGTCTTAT GCTTCATAAA AATATTGCTT TGTCTTATGT AGGTGAAGGA ACATGATTCT 4750 |||||||| |||||||||| .......... .......... .......... .......... ..GTGAAGGA ACATGATTCT 66 AGAAGCCGCA GCCGCAGCCG TTCTTACTCG AGAGGAAAGA GTGGTAGCCG TAGCCGCAGT 4690 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAAGCCGCA GCCGCAGCCG TTCTTACTCG AGAGGAAAGA GTGGTAGCCG TAGCCGCAGT 126 CGAAGTTACA GTCGCAGCCG GAGCAGAAGG TATGTATTAT GTAGTTTGCA CGTTTTATAG 4630 |||||||||| |||||||||| ||||||||| CGAAGTTACA GTCGCAGCCG GAGCAGAAG. .......... .......... .......... 155 CTTGTTACTT CACCTTTGAA TGCTACTATG TATCTCATTG CTGCTCTTTC CTAGCAGCAA 4570 ||| .......... .......... .......... .......... .......... .......CAA 158 ATCTCCTAAA GCTAAGTCGT CAAAGCGTAC AAGATCTCGT TCTAGATCTG TCTCTTCTCA 4510 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCTCCTAAA GCTAAGTCGT CAAAGCGTAC AAGATCTCGT TCTAGATCTG TCTCTTCTCA 218 GCCCCGTTCT GGGTTAAAAG GACGCTCTTT GTCAAGGTAA TCTTTCTTAC TGGTCATATC 4450 |||||||||| |||||||||| |||||||||| |||||| GCCCCGTTCT GGGTTAAAAG GACGCTCTTT GTCAAG.... .......... .......... 254 TACCCATTTT GTTGTTGGGG CAGGTTATGT AAAAGTAGCA TATAGTACAA GGTTAATGTA 4390 .......... .......... .......... .......... .......... .......... 254 TATTTTTATG CAAGTCCTTG TACTGGTCTT TTTTTGAGTC AAAAGTCCTT GTGTCTATCA 4330 .......... .......... .......... .......... .......... .......... 254 GTTTATCTTA ATCATTTTAA TCTTTTCTTT GTGAAAGCCA CCTGGGAATT AACTGTTGCA 4270 .......... .......... .......... .......... .......... .......... 254 TCTTGCACCT CATTTATTTA GTGGGAAATC AGCTGAGCAC TTTGTTTCCA ACCCTTAATC 4210 .......... .......... .......... .......... .......... .......... 254 TTGACTAGAC TTTGTATAGT TGTGGACATG AGATGGCTTT GAAGCAAAAA GTTGTTTTGC 4150 .......... .......... .......... .......... .......... .......... 254 AGTGTGACCA ATTTAACATT TTCACACAAG TTGGTTGTAA ATTTCACAAA TTCAAATTGC 4090 .......... .......... .......... .......... .......... .......... 254 AAATTGCATC TGCAAAATGA TTTCAATTGT TCCTCCTTTT TGATTTTTCG AGAAGCATTA 4030 .......... .......... .......... .......... .......... .......... 254 TATTGGTTGT ACATTATTTA TGATTGATGT GGTAAGTCTT GGCCCGACAA CGGCCTTCTT 3970 .......... .......... .......... .......... .......... .......... 254 TCCCATATAT AGAGTAACAG ATCATGTGTA CTGCGTATGA ACATTAAGGT TCTGATCCCT 3910 .......... .......... .......... .......... .......... .......... 254 CATTCAGTTT GGATCAATAT CGTCCTTCCA AAATTGTAAG TGAACCTTTT GGAAATTTGT 3850 .......... .......... .......... .......... .......... .......... 254 CAAGATTCTA GATCAACGTG CAATGGCTCA GTGGGTAACT AAGCTGTCAT TAGCTAATAT 3790 .......... .......... .......... .......... .......... .......... 254 GGTGCTCGTA TTGTAGTTTT AATAGGCTTT ATATTATGGT GAGGTACAAT TCTGCATCTT 3730 .......... .......... .......... .......... .......... .......... 254 TTTTGGTGGC ATAGAGATAG CCAATGTTAA TTTCATTCTG CTTCAGGGTG TCTCCGTCCA 3670 .......... .......... .......... .......... .......... .......... 254 AAAAAACCCA GTCTGCTTCA GGGTGATAGA TCTTTTTGAA CCTAAGCAAT GTCAAACCAT 3610 .......... .......... .......... .......... .......... .......... 254 TTGATAAACC AGACAAGCTA GGGAACATCA CAAGTGCAGA GTCCTGTACA TCAGGATTGT 3550 .......... .......... .......... .......... .......... .......... 254 TCTTCTTCTT CTAATTATGC TGTGTCTAAC TGTAATTGCG GCTATCAAAT ATGTGGTCAA 3490 .......... .......... .......... .......... .......... .......... 254 CTGGTCATTC AGTTATGAAA AGATGTCTAG ATACTGCATT TCAGAATCCA TTAGGAACAA 3430 .......... .......... .......... .......... .......... .......... 254 AATAGTTGTT GGGTGTTGGA TGTAGAAGTT GGTTCTTCCT ATGCTTCTTG TGACTTTTGC 3370 .......... .......... .......... .......... .......... .......... 254 ATTTTGGAAA TGTCGGGAAA ATATTCTGTG TTGTCAAGGT ATCATTTATT ATTTCCTTTG 3310 .......... .......... .......... .......... .......... .......... 254 TAAATATGAG AAATCACATT GTTGGTTTTT CTAGATGTTG GATTTATACG AGGATCTTGG 3250 .......... .......... .......... .......... .......... .......... 254 AATGCATATT AGGATCTTGA GTGGATATGG TCTTGCCTAC AACAAATGTT GTTGTGGAGG 3190 .......... .......... .......... .......... .......... .......... 254 TATGCTGTTT TCTAGATGGC AGCTTCGGAA TCTTTTATGG TGTCTCTCCT CTAATGAGCA 3130 .......... .......... .......... .......... .......... .......... 254 TCATGAAATG TCCATCGATG CTAAGATTGG GAACAAGAAG ATCATGGATT TTGATGGTCA 3070 .......... .......... .......... .......... .......... .......... 254 AGCTGGAGTG GCATACTAGA ACTTCACTTT GAATTTGGGA TCGCCATCTG GCAAGCTAAT 3010 .......... .......... .......... .......... .......... .......... 254 AAGACACTAA TTGGTTCTTT CACTTCCTGT TAATTGGTCT TTAAACAACA CAAACTTAAA 2950 .......... .......... .......... .......... .......... .......... 254 TTATTGACTA GAACTCTTCC TTAACTAGGT AACTTGCATG GCTTCATACT TGTCATTGTT 2890 .......... .......... .......... .......... .......... .......... 254 TTCTCTTTGG GATGGTGAAA TGGTAACGGG TTTCTGCATG TCTACTTTGA TTATGGCCAC 2830 .......... .......... .......... .......... .......... .......... 254 TCCGACGTGG AAGTGGCATC AAGGCAGTCG GATGAAAGTT GTTAAGCGGA AGGTTGGATA 2770 .......... .......... .......... .......... .......... .......... 254 TTAAATTGAG TTGTTTCTGG ACATTTTGCA GATCTCCATC AAGATCCAGA TCCCCAGTAC 2710 ||||||||| |||||||||| |||||||||| .......... .......... .......... .ATCTCCATC AAGATCCAGA TCCCCAGTAC 283 CATCTGTAAG TCAAATGACT CTTCTAAGAT AAAAATGAAA GCTTGGAATT ATTGTATCTG 2650 ||||| CATCT..... .......... .......... .......... .......... .......... 288 GCGGTAGAAC TATTTTGTCT TATTACATTT GTATTAAGTT ATTTGAATTA CATTCTTTTT 2590 .......... .......... .......... .......... .......... .......... 288 TACTTCGAAT CCTCTCTTTG TTTGTTGGCA TTTTATATTT GGCTGGATTG GTCTCAGCGC 2530 ||| .......... .......... .......... .......... .......... .......CGC 291 CCAAAACGTG TGAGCAAAAG CCCAAAACCT CGCGACTCCA GGAGAAGCCA GAGCTTGAGT 2470 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCAAAACGTG TGAGCAAAAG CCCAAAACCT CGCGACTCCA GGAGAAGCCA GAGCTTGAGT 351 AAAAGCCCAA AACCTCGTGA TTCCAGGAGA AGCGAGAGTC CAAGCAAGAG CCCCAAACTG 2410 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAAGCCCAA AACCTCGTGA TTCCAGGAGA AGCGAGAGTC CAAGCAAGAG CCCCAAACTG 411 CGTGATTCCA GGAGAAGCAA GAGCATGAGT AAAAGCC 2373 |||||||||| |||||||||| |||||||||| ||||||| CGTGATTCCA GGAGAAGCAA GAGCATGAGT AAAAGCC 448 hqPGS_C06HBa0024L21.1-4-_SGN-E274214+ (4929 4882,4767 4661,4572 4474,2738 2705,2532 2373) ******************************************************************************** EST sequence 22 +strand 393 n (File: SGN-E348264+) 1 TGAGAGCTAT ATTGTGGATT AAGCTGTTGC TGCAGGTGCG GAGATAGAGA GTGTGCTGCT 61 GTGCCTGAAT AGAGCAGCTG AGCTGTTGGT GTCATCTTTT CCGATAACTA GTCCTGATGA 121 ATGGCTTCTG AATTTTTTGG TCCATGACCA AAATAGAACT CAACTGTGAA CCTTTGACTT 181 GGGGAAGACT GCAGTATTCT AGTATTTTAA GCAACTTTGC AGCATGTATG ATGGCAAAAA 241 TTGAAAATTA TGTCTTGGAT ATTTGCAGAT TTTGTTATTT GTTTCCTGCA GGTGAAATGC 301 TACTTATGTA ATGACATTGT CTGCACTCTT GTGACTTTGT AAGTTCTTTT CCTGATGTGT 361 GTCTGTTTTC CTGAAAAAAA AAAAAAAAAA AAA Predicted gene structure (within gDNA segment 2746 to 973): Exon 1 2146 1774 ( 373 n); cDNA 1 373 ( 373 n); score: 1.000 PPA cDNA 374 393 MATCH C06HBa0024L21.1-4- SGN-E348264+ 1.000 373 0.949 C PGS_C06HBa0024L21.1-4-_SGN-E348264+ (2146 1774) Alignment (genomic DNA sequence = upper lines): TGAGAGCTAT ATTGTGGATT AAGCTGTTGC TGCAGGTGCG GAGATAGAGA GTGTGCTGCT 2087 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAGAGCTAT ATTGTGGATT AAGCTGTTGC TGCAGGTGCG GAGATAGAGA GTGTGCTGCT 60 GTGCCTGAAT AGAGCAGCTG AGCTGTTGGT GTCATCTTTT CCGATAACTA GTCCTGATGA 2027 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGCCTGAAT AGAGCAGCTG AGCTGTTGGT GTCATCTTTT CCGATAACTA GTCCTGATGA 120 ATGGCTTCTG AATTTTTTGG TCCATGACCA AAATAGAACT CAACTGTGAA CCTTTGACTT 1967 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGGCTTCTG AATTTTTTGG TCCATGACCA AAATAGAACT CAACTGTGAA CCTTTGACTT 180 GGGGAAGACT GCAGTATTCT AGTATTTTAA GCAACTTTGC AGCATGTATG ATGGCAAAAA 1907 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGGGAAGACT GCAGTATTCT AGTATTTTAA GCAACTTTGC AGCATGTATG ATGGCAAAAA 240 TTGAAAATTA TGTCTTGGAT ATTTGCAGAT TTTGTTATTT GTTTCCTGCA GGTGAAATGC 1847 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGAAAATTA TGTCTTGGAT ATTTGCAGAT TTTGTTATTT GTTTCCTGCA GGTGAAATGC 300 TACTTATGTA ATGACATTGT CTGCACTCTT GTGACTTTGT AAGTTCTTTT CCTGATGTGT 1787 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TACTTATGTA ATGACATTGT CTGCACTCTT GTGACTTTGT AAGTTCTTTT CCTGATGTGT 360 GTCTGTTTTC CTG 1774 |||||||||| ||| GTCTGTTTTC CTG 373 hqPGS_C06HBa0024L21.1-4-_SGN-E348264+ (2146 1774) ******************************************************************************** EST sequence 2 -strand 280 n (File: SGN-E224349-) 1 TGTTGGTGTA ATCTTTTCCG ATAACTAGTC CTGATGAATG GCTTCTGAAT TTTTTGGTCC 61 ATGACCAAAA TAGAACTCAA CTGTGAACCT TTGACTTGGG GAAGACTGCA GTATTCTAGT 121 ATTTTAAGCA ACTTTGCAGC ATGTATGATG GCAAAAATTG AAAATTATGT CTTGGATATT 181 TGCAGATTTT GTTATTTGTT TCCTGCAGGT AAAATGCTAC TTATGTAATG ACATTGTCTG 241 CACTCTTGTG ACTTTGTAAA AAAAAAAAAA AAAAAAAAAA Predicted gene structure (within gDNA segment 2763 to 995): Exon 1 2063 1805 ( 259 n); cDNA 1 259 ( 259 n); score: 0.992 PPA cDNA 260 280 MATCH C06HBa0024L21.1-4- SGN-E224349- 0.992 259 0.925 C PGS_C06HBa0024L21.1-4-_SGN-E224349- (2063 1805) Alignment (genomic DNA sequence = upper lines): TGTTGGTGTC ATCTTTTCCG ATAACTAGTC CTGATGAATG GCTTCTGAAT TTTTTGGTCC 2004 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTTGGTGTA ATCTTTTCCG ATAACTAGTC CTGATGAATG GCTTCTGAAT TTTTTGGTCC 60 ATGACCAAAA TAGAACTCAA CTGTGAACCT TTGACTTGGG GAAGACTGCA GTATTCTAGT 1944 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGACCAAAA TAGAACTCAA CTGTGAACCT TTGACTTGGG GAAGACTGCA GTATTCTAGT 120 ATTTTAAGCA ACTTTGCAGC ATGTATGATG GCAAAAATTG AAAATTATGT CTTGGATATT 1884 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTTTAAGCA ACTTTGCAGC ATGTATGATG GCAAAAATTG AAAATTATGT CTTGGATATT 180 TGCAGATTTT GTTATTTGTT TCCTGCAGGT GAAATGCTAC TTATGTAATG ACATTGTCTG 1824 |||||||||| |||||||||| |||||||||| ||||||||| |||||||||| |||||||||| TGCAGATTTT GTTATTTGTT TCCTGCAGGT AAAATGCTAC TTATGTAATG ACATTGTCTG 240 CACTCTTGTG ACTTTGTAA 1805 |||||||||| ||||||||| CACTCTTGTG ACTTTGTAA 259 hqPGS_C06HBa0024L21.1-4-_SGN-E224349- (2063 1805) ******************************************************************************** EST sequence 48 +strand 772 n (File: SGN-E320480+) 1 TGTTCTACAA GTATGGCCCG ATAGCACATA TTGATCTGAA AATTCCACCA AGACCCCCAG 61 GTTATGCTTT TGTTGAGTTT GAAGAGGCAC GCGATGCTGA GGATGCTATT CGTGGGCGCG 121 ATGGCTATGA ATTTGATGGG CATCGTTTGA GGGTTGAGCT TGCACATGGT GGGCGTGGTA 181 ACTCATCGTC AGATCGTTAT AATAGTGGCA ATAATAGTGG CCATAATGGT GGTCGTAATA 241 ATCACAAATT TGGAGCGCCC AAACGTACCG AGTATCGAGT TTTAGTTACC GGATTGCCCC 301 ATTCAGCATC CTGGCAGGAT CTCAAGGATC ATATGCGTCG AGCTGGGGAT GTTTGTTTCT 361 CACAAGTTTT CCGTGAGGGG AGTGGGACCA CTGGGATTGT GGATTATACC AACTATGACG 421 ACATGAAATA TGCTATAAAA AAACTTGATG AATCTGAGTT TCGGAATGCT TTTTCTCGTT 481 CAACAATTCG GGTGAAGGAA CATGATTCTA GAAGCCGCAG CCGCAGCCGT TCTTACTCGA 541 GAGGAAAGAG TGGTAGCCGT AGCCGCAGTC GAAGTTACAG TCGCAGCCGG AGCAGAAGCA 601 AATCTCCTAA AGCTAAGTCG TCAAAGCGTA CAAGATCTCG TTCTAGATCT GTCTCTTCTC 661 AGCCCCGTTC TGGGTTAAAA GGACGCTCTT TGTNCAGATC TCCATCAAGA TCCAGATCCC 721 CAGTACCATC TCGCCCAAGA CGTGTGAGCA AAAGCCCCAA ACCACGCAAT TC Predicted gene structure (within gDNA segment 8928 to 1685): Exon 1 8334 8324 ( 11 n); cDNA 1 11 ( 11 n); score: 1.000 Intron 1 8323 8237 ( 87 n); Pd: 1.000 (s: 0), Pa: 0.999 (s: 1.00) Exon 2 8236 8171 ( 66 n); cDNA 12 77 ( 66 n); score: 1.000 Intron 2 8170 8074 ( 97 n); Pd: 0.999 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 3 8073 7999 ( 75 n); cDNA 78 152 ( 75 n); score: 1.000 Intron 3 7998 7621 ( 378 n); Pd: 0.996 (s: 1.00), Pa: 0.996 (s: 1.00) Exon 4 7620 7494 ( 127 n); cDNA 153 279 ( 127 n); score: 1.000 Intron 4 7493 7413 ( 81 n); Pd: 0.994 (s: 1.00), Pa: 0.994 (s: 1.00) Exon 5 7412 7366 ( 47 n); cDNA 280 326 ( 47 n); score: 1.000 Intron 5 7365 7259 ( 107 n); Pd: 0.700 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 6 7258 7201 ( 58 n); cDNA 327 384 ( 58 n); score: 1.000 Intron 6 7200 5101 (2100 n); Pd: 0.922 (s: 1.00), Pa: 0.926 (s: 1.00) Exon 7 5100 5051 ( 50 n); cDNA 385 434 ( 50 n); score: 1.000 Intron 7 5050 4939 ( 112 n); Pd: 0.999 (s: 1.00), Pa: 0.959 (s: 1.00) Exon 8 4938 4882 ( 57 n); cDNA 435 491 ( 57 n); score: 1.000 Intron 8 4881 4768 ( 114 n); Pd: 0.871 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 9 4767 4661 ( 107 n); cDNA 492 598 ( 107 n); score: 1.000 Intron 9 4660 4573 ( 88 n); Pd: 1.000 (s: 1.00), Pa: 0.429 (s: 1.00) Exon 10 4572 4474 ( 99 n); cDNA 599 697 ( 99 n); score: 0.980 Intron 10 4473 2739 (1735 n); Pd: 0.995 (s: 0.96), Pa: 0.876 (s: 0) Exon 11 2738 2705 ( 34 n); cDNA 698 731 ( 34 n); score: 1.000 Intron 11 2704 2533 ( 172 n); Pd: 0.996 (s: 0), Pa: 0.978 (s: 0.88) Exon 12 2532 2492 ( 41 n); cDNA 732 772 ( 41 n); score: 0.878 MATCH C06HBa0024L21.1-4- SGN-E320480+ 0.997 772 1.000 C PGS_C06HBa0024L21.1-4-_SGN-E320480+ (8334 8324,8236 8171,8073 7999,7620 7494,7412 7366,7258 7201,5100 5051,4938 4882,4767 4661,4572 4474,2738 2705,2532 2492) Alignment (genomic DNA sequence = upper lines): TGTTCTACAA GGTACTTGTA TAACACTTAG CTTCATACTT TAGTTGGATG TCATTTACTA 8275 |||||||||| | TGTTCTACAA G......... .......... .......... .......... .......... 11 TGCTCATAAA CTTAAATGTG TGTGGCGTAT AATTGTAGTA TGGCCCGATA GCACATATTG 8215 || |||||||||| |||||||||| .......... .......... .......... ........TA TGGCCCGATA GCACATATTG 33 ATCTGAAAAT TCCACCAAGA CCCCCAGGTT ATGCTTTTGT TGAGGTAAGT TTTGACTGCA 8155 |||||||||| |||||||||| |||||||||| |||||||||| |||| ATCTGAAAAT TCCACCAAGA CCCCCAGGTT ATGCTTTTGT TGAG...... .......... 77 TTGGCTAAAA TGAATTTCAT TGGATATTTC CTTCTCAATT GTTAACCTAT TTTGACATTG 8095 .......... .......... .......... .......... .......... .......... 77 TTTTGTTGGA ACTAAACACA GTTTGAAGAG GCACGCGATG CTGAGGATGC TATTCGTGGG 8035 ||||||||| |||||||||| |||||||||| |||||||||| .......... .......... .TTTGAAGAG GCACGCGATG CTGAGGATGC TATTCGTGGG 116 CGCGATGGCT ATGAATTTGA TGGGCATCGT TTGAGGGTTA GTAAAATCTT AACAGCATAT 7975 |||||||||| |||||||||| |||||||||| |||||| CGCGATGGCT ATGAATTTGA TGGGCATCGT TTGAGG.... .......... .......... 152 AGGATACACA CACATGAATC AATTGTATCC TCTGTTTACT CTGAGAAGTA TGATTGACTT 7915 .......... .......... .......... .......... .......... .......... 152 GCATTTTTGA ATCAGGGTTT CCAATTCTTG TATTAATTGC ATTTCGTTGA CCCTAGCATT 7855 .......... .......... .......... .......... .......... .......... 152 TCACCTAAAC CATTATGTTT CTTTATTAAA TGCTTGTCCC AAATTAGTTG GGATCAGTTT 7795 .......... .......... .......... .......... .......... .......... 152 TATAAATTGT CTGTAACCAT CCTACTTTAT CCAGGCGTAT TTTTCTTTTC AAGCTTAGTT 7735 .......... .......... .......... .......... .......... .......... 152 TGTCTTTCAA GGCAAATTAA CATGTCTAAT ACATATAAGA CACCTAAATG CTAAATAGTT 7675 .......... .......... .......... .......... .......... .......... 152 TTCTTTTTGA GGTGCTTAAG ATCTAAGCCT ACTGAAACTG TTACATGTAT GCAGGTTGAG 7615 |||||| .......... .......... .......... .......... .......... ....GTTGAG 158 CTTGCACATG GTGGGCGTGG TAACTCATCG TCAGATCGTT ATAATAGTGG CAATAATAGT 7555 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTGCACATG GTGGGCGTGG TAACTCATCG TCAGATCGTT ATAATAGTGG CAATAATAGT 218 GGCCATAATG GTGGTCGTAA TAATCACAAA TTTGGAGCGC CCAAACGTAC CGAGTATCGA 7495 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGCCATAATG GTGGTCGTAA TAATCACAAA TTTGGAGCGC CCAAACGTAC CGAGTATCGA 278 GGCACGTATG TTATTAATGT GCACATAATT TTCTTTATTG CATTTCATGC CTTCTTGATC 7435 | G......... .......... .......... .......... .......... .......... 279 TAATTCACTT ACTCATTTTC AGTTTTAGTT ACCGGATTGC CCCATTCAGC ATCCTGGCAG 7375 |||||||| |||||||||| |||||||||| |||||||||| .......... .......... ..TTTTAGTT ACCGGATTGC CCCATTCAGC ATCCTGGCAG 317 GATCTCAAGG TGAGTGGTGT CTGTGTGGTA AATTATAAGG ACCGTGGCTA AAAGTGATCT 7315 ||||||||| GATCTCAAG. .......... .......... .......... .......... .......... 326 TCCTTTTCTG GTATCTTCTA GCTTCTGAAT ATTGGTATTC TATGTTTCTT ATGTAGGATC 7255 |||| .......... .......... .......... .......... .......... ......GATC 330 ATATGCGTCG AGCTGGGGAT GTTTGTTTCT CACAAGTTTT CCGTGAGGGG AGTGGTAAGA 7195 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||| ATATGCGTCG AGCTGGGGAT GTTTGTTTCT CACAAGTTTT CCGTGAGGGG AGTG...... 384 TAATTTGCAA CAGATACTAG TTTTATGCTC CTCTTAATTG TCCCTTTGTT TTGTTTGTAT 7135 .......... .......... .......... .......... .......... .......... 384 AAGGGTTTGT TTTTACTATG CCAAAGGAAC TTGCCTATAT CAGGACCTAT ATTGGTAAAT 7075 .......... .......... .......... .......... .......... .......... 384 TTGGTAAATT AAGAGTCAAG TCTCTATAAC TACCCTTTCT CTTTTTTTCC TTTTCCGTCT 7015 .......... .......... .......... .......... .......... .......... 384 TTCTGTTGGG TTTTCTTCTT TGAGAAGTGG TTGGAGAAGG ATGGATATTT GATCCTTTTT 6955 .......... .......... .......... .......... .......... .......... 384 TTTGAGAATA GCAATATATT TTCTGTGGAT AACTTGAATT TCAATTGTTT TTATGGCTCT 6895 .......... .......... .......... .......... .......... .......... 384 TTAACTTACT ACCTTGAGCT GACTATCTTT CATAATGCAA CTAGAAAGGC TTTCTCAAAG 6835 .......... .......... .......... .......... .......... .......... 384 TAGAATCATT TCTTAAATCT TGTGTTGAAT GTGACTGTGG TTCATCATTG GGTCTGCAAG 6775 .......... .......... .......... .......... .......... .......... 384 TGTCTTTCCC AACCATATAA CAGCTAATAT TATCTTTCAG ACCCAATCAA AACCAAATCT 6715 .......... .......... .......... .......... .......... .......... 384 TGTTCTATGG CCCGTGAATA GATGATATTT TTGGGCTATT GTTGAGAACA AAATTGCTGT 6655 .......... .......... .......... .......... .......... .......... 384 ACGCTGCAGT AACGTGCATT AGTTATATAT TTGATGACTT CTGGCTTAGT TTATAGTTTA 6595 .......... .......... .......... .......... .......... .......... 384 TAGTTTATAC TATAATGTTT AGCCAACTTG GCTGGATAAA GTGACTGCGT CACTCAGTTT 6535 .......... .......... .......... .......... .......... .......... 384 GGATGGGATA ATGGGTGCTA TTACCAATCT TGGTAAAATG GTCAGGTTTG ATATATTATA 6475 .......... .......... .......... .......... .......... .......... 384 TATCCTTTGA CTGAAGTTTG TCATTGTACA TCATCATTCA AAACATAGTT CCATCCGTTT 6415 .......... .......... .......... .......... .......... .......... 384 TAGTCAGAAA ACTATTTTTC TCTTCTGGTG CCATAGTAAT ATAATAGAAC AAGAAAGAAT 6355 .......... .......... .......... .......... .......... .......... 384 TACAGAAAGT TAAAAAGTAT TAACATAAAA AAAAAGTAGA TGAAAAATTT GTTGGGGTAA 6295 .......... .......... .......... .......... .......... .......... 384 CGCATAAAGT AAAAAAAATA GCAGGGAAAA ATAAAATGGA GCAGAAAAAG AGAAAGGAGG 6235 .......... .......... .......... .......... .......... .......... 384 GAAGTCTAAA AGAAATCCTT GGTTTGGGGT TGAGGAAAGA CGGTAATGTT TCAACCCAGG 6175 .......... .......... .......... .......... .......... .......... 384 TGTTGTAGAA GAGTAGATTA ATTATTTTTT GGGGCATTTG TTGGAGAGGT AAGTGGGAGC 6115 .......... .......... .......... .......... .......... .......... 384 TCTGTTGGAC GATGAGGAGA AGATAGCAGG AAATAAGTGA GCTTATTTTT TCATCTTCCA 6055 .......... .......... .......... .......... .......... .......... 384 TGTTGAATAA CATCCTGTGC TTACCTGTGT ATTCCTCACT CTTTGAATAA ATGTTGATGT 5995 .......... .......... .......... .......... .......... .......... 384 GTGTCTGGAT GTAATGCCTG GATTATGTCC CGCCTGGTGA TAGTGGTCCT CCATAACAAG 5935 .......... .......... .......... .......... .......... .......... 384 ATAGTACTGC TATCTGGCTT ATTGCATGTT ACCAACCTTG AACAAGCCAA GATAATGAAG 5875 .......... .......... .......... .......... .......... .......... 384 AGGCTAATCT AATAAGTGGG CTTAACAATG GATACACCAA GAATAGGAGT GGGTCTGGCT 5815 .......... .......... .......... .......... .......... .......... 384 CTAATATCAT ACCATGTTAA GTGGAAAATT TGGGCCCAAC TCAACTCCAA AAGGTACCTT 5755 .......... .......... .......... .......... .......... .......... 384 AGTGCCAGAT CATGCAATAA GATCTCTTTT TCCCTCTTTC CTTCATGTTT CAGATCATGC 5695 .......... .......... .......... .......... .......... .......... 384 TAACTCAACT CCAAAAGGTA GCTTAGTGCA AGATCATGCA ATAAGATCTC TTTTTACCTC 5635 .......... .......... .......... .......... .......... .......... 384 TTTCCTTTAA TGTTTCAGAT TATGCAATAA GATAACTTTC CTTCTTTCCT TTAATTGTTT 5575 .......... .......... .......... .......... .......... .......... 384 CAGTTAGCTT GCTATTAGGT TTTACATAGA AAATTGTCAT CATTTTTGTC AGGACAAATA 5515 .......... .......... .......... .......... .......... .......... 384 TACTAGAGCC TTTATAATTA AGACAGTTAA TAGACAGATG GCAAAGATGG TTCGACTCTA 5455 .......... .......... .......... .......... .......... .......... 384 AAATAGGAAT TTAATAGTTG ATTTTACCCT ATATAAATGG AATTGAAAAT AGTGATTGCC 5395 .......... .......... .......... .......... .......... .......... 384 ACTCAAAATC TAGGGTCAGC TGAGATTTAT TGGATATTTC AATTTTGTGG TTGTGACTAA 5335 .......... .......... .......... .......... .......... .......... 384 AATGGCCCGA ATGTATGGCT GAGCAGTTTA AAGACCTGTG GAAATAATGT GCTTCAGATT 5275 .......... .......... .......... .......... .......... .......... 384 TTTTTTATTC TGTAATCAAA TGTGGTGCTG CCTTATCTTT GAAATAATTT CTTGTGCTTC 5215 .......... .......... .......... .......... .......... .......... 384 TACTCAATTT TTGTTGTGGC AAGCACCCTA CTCTTGCTAT GACTTGTGAA TTTACTCTCC 5155 .......... .......... .......... .......... .......... .......... 384 TTAAGTGATT CTTTTGTGGT GGATGGTGCG CTAACAATCA GTTTTGCTCT TCAGGGACCA 5095 |||||| .......... .......... .......... .......... .......... ....GGACCA 390 CTGGGATTGT GGATTATACC AACTATGACG ACATGAAATA TGCTGTAAGC TATCTCCTGT 5035 |||||||||| |||||||||| |||||||||| |||||||||| |||| CTGGGATTGT GGATTATACC AACTATGACG ACATGAAATA TGCT...... .......... 434 TTCTTATTCT GTATAATTAT CCTCAATTTT TGTTCAAGAT ATTTGAAATA TGTTTATGCT 4975 .......... .......... .......... .......... .......... .......... 434 CGACTAACGA GTGTAATTAA TTTTCCTTGT ATGTAGATAA AAAAACTTGA TGAATCTGAG 4915 |||| |||||||||| |||||||||| .......... .......... .......... ......ATAA AAAAACTTGA TGAATCTGAG 458 TTTCGGAATG CTTTTTCTCG TTCAACAATT CGGGTATGAT GTGATTATAA CTCAAATGAT 4855 |||||||||| |||||||||| |||||||||| ||| TTTCGGAATG CTTTTTCTCG TTCAACAATT CGG....... .......... .......... 491 ATGATTGCAG GATGCTTAGT GCCTTTTCTT TTGTTAGCCT ATACCATTGT CTTATGCTTC 4795 .......... .......... .......... .......... .......... .......... 491 ATAAAAATAT TGCTTTGTCT TATGTAGGTG AAGGAACATG ATTCTAGAAG CCGCAGCCGC 4735 ||| |||||||||| |||||||||| |||||||||| .......... .......... .......GTG AAGGAACATG ATTCTAGAAG CCGCAGCCGC 524 AGCCGTTCTT ACTCGAGAGG AAAGAGTGGT AGCCGTAGCC GCAGTCGAAG TTACAGTCGC 4675 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCCGTTCTT ACTCGAGAGG AAAGAGTGGT AGCCGTAGCC GCAGTCGAAG TTACAGTCGC 584 AGCCGGAGCA GAAGGTATGT ATTATGTAGT TTGCACGTTT TATAGCTTGT TACTTCACCT 4615 |||||||||| |||| AGCCGGAGCA GAAG...... .......... .......... .......... .......... 598 TTGAATGCTA CTATGTATCT CATTGCTGCT CTTTCCTAGC AGCAAATCTC CTAAAGCTAA 4555 |||||||| |||||||||| .......... .......... .......... .......... ..CAAATCTC CTAAAGCTAA 616 GTCGTCAAAG CGTACAAGAT CTCGTTCTAG ATCTGTCTCT TCTCAGCCCC GTTCTGGGTT 4495 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTCGTCAAAG CGTACAAGAT CTCGTTCTAG ATCTGTCTCT TCTCAGCCCC GTTCTGGGTT 676 AAAAGGACGC TCTTTGTCAA GGTAATCTTT CTTACTGGTC ATATCTACCC ATTTTGTTGT 4435 |||||||||| ||||||| | | AAAAGGACGC TCTTTGTNCA G......... .......... .......... .......... 697 TGGGGCAGGT TATGTAAAAG TAGCATATAG TACAAGGTTA ATGTATATTT TTATGCAAGT 4375 .......... .......... .......... .......... .......... .......... 697 CCTTGTACTG GTCTTTTTTT GAGTCAAAAG TCCTTGTGTC TATCAGTTTA TCTTAATCAT 4315 .......... .......... .......... .......... .......... .......... 697 TTTAATCTTT TCTTTGTGAA AGCCACCTGG GAATTAACTG TTGCATCTTG CACCTCATTT 4255 .......... .......... .......... .......... .......... .......... 697 ATTTAGTGGG AAATCAGCTG AGCACTTTGT TTCCAACCCT TAATCTTGAC TAGACTTTGT 4195 .......... .......... .......... .......... .......... .......... 697 ATAGTTGTGG ACATGAGATG GCTTTGAAGC AAAAAGTTGT TTTGCAGTGT GACCAATTTA 4135 .......... .......... .......... .......... .......... .......... 697 ACATTTTCAC ACAAGTTGGT TGTAAATTTC ACAAATTCAA ATTGCAAATT GCATCTGCAA 4075 .......... .......... .......... .......... .......... .......... 697 AATGATTTCA ATTGTTCCTC CTTTTTGATT TTTCGAGAAG CATTATATTG GTTGTACATT 4015 .......... .......... .......... .......... .......... .......... 697 ATTTATGATT GATGTGGTAA GTCTTGGCCC GACAACGGCC TTCTTTCCCA TATATAGAGT 3955 .......... .......... .......... .......... .......... .......... 697 AACAGATCAT GTGTACTGCG TATGAACATT AAGGTTCTGA TCCCTCATTC AGTTTGGATC 3895 .......... .......... .......... .......... .......... .......... 697 AATATCGTCC TTCCAAAATT GTAAGTGAAC CTTTTGGAAA TTTGTCAAGA TTCTAGATCA 3835 .......... .......... .......... .......... .......... .......... 697 ACGTGCAATG GCTCAGTGGG TAACTAAGCT GTCATTAGCT AATATGGTGC TCGTATTGTA 3775 .......... .......... .......... .......... .......... .......... 697 GTTTTAATAG GCTTTATATT ATGGTGAGGT ACAATTCTGC ATCTTTTTTG GTGGCATAGA 3715 .......... .......... .......... .......... .......... .......... 697 GATAGCCAAT GTTAATTTCA TTCTGCTTCA GGGTGTCTCC GTCCAAAAAA ACCCAGTCTG 3655 .......... .......... .......... .......... .......... .......... 697 CTTCAGGGTG ATAGATCTTT TTGAACCTAA GCAATGTCAA ACCATTTGAT AAACCAGACA 3595 .......... .......... .......... .......... .......... .......... 697 AGCTAGGGAA CATCACAAGT GCAGAGTCCT GTACATCAGG ATTGTTCTTC TTCTTCTAAT 3535 .......... .......... .......... .......... .......... .......... 697 TATGCTGTGT CTAACTGTAA TTGCGGCTAT CAAATATGTG GTCAACTGGT CATTCAGTTA 3475 .......... .......... .......... .......... .......... .......... 697 TGAAAAGATG TCTAGATACT GCATTTCAGA ATCCATTAGG AACAAAATAG TTGTTGGGTG 3415 .......... .......... .......... .......... .......... .......... 697 TTGGATGTAG AAGTTGGTTC TTCCTATGCT TCTTGTGACT TTTGCATTTT GGAAATGTCG 3355 .......... .......... .......... .......... .......... .......... 697 GGAAAATATT CTGTGTTGTC AAGGTATCAT TTATTATTTC CTTTGTAAAT ATGAGAAATC 3295 .......... .......... .......... .......... .......... .......... 697 ACATTGTTGG TTTTTCTAGA TGTTGGATTT ATACGAGGAT CTTGGAATGC ATATTAGGAT 3235 .......... .......... .......... .......... .......... .......... 697 CTTGAGTGGA TATGGTCTTG CCTACAACAA ATGTTGTTGT GGAGGTATGC TGTTTTCTAG 3175 .......... .......... .......... .......... .......... .......... 697 ATGGCAGCTT CGGAATCTTT TATGGTGTCT CTCCTCTAAT GAGCATCATG AAATGTCCAT 3115 .......... .......... .......... .......... .......... .......... 697 CGATGCTAAG ATTGGGAACA AGAAGATCAT GGATTTTGAT GGTCAAGCTG GAGTGGCATA 3055 .......... .......... .......... .......... .......... .......... 697 CTAGAACTTC ACTTTGAATT TGGGATCGCC ATCTGGCAAG CTAATAAGAC ACTAATTGGT 2995 .......... .......... .......... .......... .......... .......... 697 TCTTTCACTT CCTGTTAATT GGTCTTTAAA CAACACAAAC TTAAATTATT GACTAGAACT 2935 .......... .......... .......... .......... .......... .......... 697 CTTCCTTAAC TAGGTAACTT GCATGGCTTC ATACTTGTCA TTGTTTTCTC TTTGGGATGG 2875 .......... .......... .......... .......... .......... .......... 697 TGAAATGGTA ACGGGTTTCT GCATGTCTAC TTTGATTATG GCCACTCCGA CGTGGAAGTG 2815 .......... .......... .......... .......... .......... .......... 697 GCATCAAGGC AGTCGGATGA AAGTTGTTAA GCGGAAGGTT GGATATTAAA TTGAGTTGTT 2755 .......... .......... .......... .......... .......... .......... 697 TCTGGACATT TTGCAGATCT CCATCAAGAT CCAGATCCCC AGTACCATCT GTAAGTCAAA 2695 |||| |||||||||| |||||||||| |||||||||| .......... ......ATCT CCATCAAGAT CCAGATCCCC AGTACCATCT .......... 731 TGACTCTTCT AAGATAAAAA TGAAAGCTTG GAATTATTGT ATCTGGCGGT AGAACTATTT 2635 .......... .......... .......... .......... .......... .......... 731 TGTCTTATTA CATTTGTATT AAGTTATTTG AATTACATTC TTTTTTACTT CGAATCCTCT 2575 .......... .......... .......... .......... .......... .......... 731 CTTTGTTTGT TGGCATTTTA TATTTGGCTG GATTGGTCTC AGCGCCCAAA ACGTGTGAGC 2515 ||||||| |||||||||| .......... .......... .......... .......... ..CGCCCAAG ACGTGTGAGC 749 AAAAGCCCAA AACCTCGCGA CTC 2492 |||||||| | |||| ||| | || AAAAGCCCCA AACCACGCAA TTC 772 hqPGS_C06HBa0024L21.1-4-_SGN-E320480+ (8334 8324,8236 8171,8073 7999,7620 7494,7412 7366,7258 7201,5100 5051,4938 4882,4767 4661,4572 4474,2738 2705,2532 2492) ******************************************************************************** EST sequence 43 +strand 685 n (File: SGN-E542931+) 1 ACCAACTATG ACGACATGAA ATATGCTATA AAAAAACTTG ATGAATCTGA GTTTCGGAAT 61 GCTTTTTCTC GTTCAACAAT TCGGGTGAAG GAACATGATT CTAGAAGCCG CAGCCGCAGC 121 CGTTCTTACT CGAGAGGAAA GAGTGGTAGC CGTAGCCGCA GTCGAAGTTA CAGTCGCAGC 181 CGGAGCAGAA GCAAATCTCC TAAAGCTAAG TCGTCAAAGC GTACAAGATC TCGTTCTAGA 241 TCTGTCTCTT CTCAGCCCCG TTCTGGGTTA AAAGGACGCT CTTTGTCAAG GTAATCTTTC 301 TTACTGGTCA TATCTACCCA TTTTGTTGTT GGGGCAGGTT ATGTAAAAGT AGCATATAGT 361 ACAAGGTTAA TGTATATTTT TATGCAAGTC CTTGTACTGG TCTTTTTTTG AGTCAAAAGT 421 CCTTGTGTCT ATCAGTTTAT CTTAATCATT TTAATCTTTT CTTTGTGAAA GCCACCTGGG 481 AATTAACTGT TGCATCTTGC ACCTCATTTA TTTAGTGGGA AATCAGCTGA GCACTTTGTT 541 TCCAACCCTT AATCTTGACT AGACTTTGTA TAGTTGTGGA CATGAGATGG CTTTGAAGCA 601 AAAAGTTGTT TTGCAGTGTG ACCAATTTAA CATTTTCACA CAAGTTGGGT TGTAAATTTC 661 ACAAATTCAA ATTGCAAATT GCATC Predicted gene structure (within gDNA segment 5808 to 3470): Exon 1 5077 5051 ( 27 n); cDNA 1 27 ( 27 n); score: 1.000 Intron 1 5050 4939 ( 112 n); Pd: 0.999 (s: 0), Pa: 0.959 (s: 1.00) Exon 2 4938 4882 ( 57 n); cDNA 28 84 ( 57 n); score: 1.000 Intron 2 4881 4768 ( 114 n); Pd: 0.871 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 3 4767 4661 ( 107 n); cDNA 85 191 ( 107 n); score: 1.000 Intron 3 4660 4573 ( 88 n); Pd: 1.000 (s: 1.00), Pa: 0.429 (s: 1.00) Exon 4 4572 4080 ( 493 n); cDNA 192 685 ( 494 n); score: 0.995 MATCH C06HBa0024L21.1-4- SGN-E542931+ 0.996 684 0.999 C PGS_C06HBa0024L21.1-4-_SGN-E542931+ (5077 5051,4938 4882,4767 4661,4572 4080) Alignment (genomic DNA sequence = upper lines): ACCAACTATG ACGACATGAA ATATGCTGTA AGCTATCTCC TGTTTCTTAT TCTGTATAAT 5018 |||||||||| |||||||||| ||||||| ACCAACTATG ACGACATGAA ATATGCT... .......... .......... .......... 27 TATCCTCAAT TTTTGTTCAA GATATTTGAA ATATGTTTAT GCTCGACTAA CGAGTGTAAT 4958 .......... .......... .......... .......... .......... .......... 27 TAATTTTCCT TGTATGTAGA TAAAAAAACT TGATGAATCT GAGTTTCGGA ATGCTTTTTC 4898 | |||||||||| |||||||||| |||||||||| |||||||||| .......... .........A TAAAAAAACT TGATGAATCT GAGTTTCGGA ATGCTTTTTC 68 TCGTTCAACA ATTCGGGTAT GATGTGATTA TAACTCAAAT GATATGATTG CAGGATGCTT 4838 |||||||||| |||||| TCGTTCAACA ATTCGG.... .......... .......... .......... .......... 84 AGTGCCTTTT CTTTTGTTAG CCTATACCAT TGTCTTATGC TTCATAAAAA TATTGCTTTG 4778 .......... .......... .......... .......... .......... .......... 84 TCTTATGTAG GTGAAGGAAC ATGATTCTAG AAGCCGCAGC CGCAGCCGTT CTTACTCGAG 4718 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... GTGAAGGAAC ATGATTCTAG AAGCCGCAGC CGCAGCCGTT CTTACTCGAG 134 AGGAAAGAGT GGTAGCCGTA GCCGCAGTCG AAGTTACAGT CGCAGCCGGA GCAGAAGGTA 4658 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||| AGGAAAGAGT GGTAGCCGTA GCCGCAGTCG AAGTTACAGT CGCAGCCGGA GCAGAAG... 191 TGTATTATGT AGTTTGCACG TTTTATAGCT TGTTACTTCA CCTTTGAATG CTACTATGTA 4598 .......... .......... .......... .......... .......... .......... 191 TCTCATTGCT GCTCTTTCCT AGCAGCAAAT CTCCTAAAGC TAAGTCGTCA AAGCGTACAA 4538 ||||| |||||||||| |||||||||| |||||||||| .......... .......... .....CAAAT CTCCTAAAGC TAAGTCGTCA AAGCGTACAA 226 GATCTCGTTC TAGATCTGTC TCTTCTCAGC CCCGTTCTGG GTTAAAAGGA CGCTCTTTGT 4478 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATCTCGTTC TAGATCTGTC TCTTCTCAGC CCCGTTCTGG GTTAAAAGGA CGCTCTTTGT 286 CAAGGTAATC TTTCTTACTG GTCATATCTA CCCATTTTGT TGTTGGGGCA GGTTATGTAA 4418 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAGGTAATC TTTCTTACTG GTCATATCTA CCCATTTTGT TGTTGGGGCA GGTTATGTAA 346 AAGTAGCATA TAGTACAAGG TTAATGTATA TTTTTATGCA AGTCCTTGTA CTGGTCTTTT 4358 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGTAGCATA TAGTACAAGG TTAATGTATA TTTTTATGCA AGTCCTTGTA CTGGTCTTTT 406 TTTGAGTCAA AAGTCCTTGT GTCTATCAGT TTATCTTAAT CATTTTAATC TTTTCTTTGT 4298 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTGAGTCAA AAGTCCTTGT GTCTATCAGT TTATCTTAAT CATTTTAATC TTTTCTTTGT 466 GAAAGCCACC TGGGAATTAA CTGTTGCATC TTGCACCTCA TTTATTTAGT GGGAAATCAG 4238 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAAGCCACC TGGGAATTAA CTGTTGCATC TTGCACCTCA TTTATTTAGT GGGAAATCAG 526 CTGAGCACTT TGTTTCCAAC CCTTAATCTT GACTAGACTT TGTATAGTTG TGGACATGAG 4178 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGAGCACTT TGTTTCCAAC CCTTAATCTT GACTAGACTT TGTATAGTTG TGGACATGAG 586 ATGGCTTTGA AGCAAAAAGT TGTTTTGCAG TGTGACCAAT TTAACATTTT CACACAAGTT 4118 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGGCTTTGA AGCAAAAAGT TGTTTTGCAG TGTGACCAAT TTAACATTTT CACACAAGTT 646 -GGTTGTAAA TTTCACAAAT TCAAATTGCA AATTGCATC 4080 ||||||||| |||||||||| |||||||||| ||||||||| GGGTTGTAAA TTTCACAAAT TCAAATTGCA AATTGCATC 685 hqPGS_C06HBa0024L21.1-4-_SGN-E542931+ (5077 5051,4938 4882,4767 4661,4572 4080) ******************************************************************************** EST sequence 58 +strand 583 n (File: SGN-E303030+) 1 CCAACTATGA CGACATGAAA TAGGGTATAA TAAAACTTGA TGAATCTGAG TTCCCGAATG 61 CTTTTTCTCG TTCAACAATT CGGGTGAAGG AACATGATTC TAGAAGCCGC AGCCGCAGCC 121 GTTCTTACTC GAGAGGAAAG AGTGGTAGCC GTAGCCGCAG TCGAAGTTAC AGTCGCAGCC 181 GGAGCAGAAG CAAATCTCCT AAAGCTAAGT CGCCAAAGCG TACAAGATCT CGTTCTAGAT 241 CTGTCTCTTC TCAGCCCCGT TCTGGGTTAA AAGGACGCTC TTTGTCAAGG TAATCTTTAT 301 TACTGGTCAT ATCTACCCAT TTTGTTGAAG GGGCAGGTTA TGTAAAAGTA GCATATAGTA 361 CAAGGTTAAT GTATATTTTT ATGCAAGTCC TTGTACTGGT CTTTTTTTGA GTCAAAAGTC 421 CTTGTGTCTA TCAGTTTATC TTAATCATTT TAATCTTTTC TTTGTGAAAG CCACCTGGGA 481 ATTAACTGTT GCATCTTGCA CCTCATATAT TTAGTGGGAA ATCACCTGAG CACTTTGTTT 541 CCAACCCTTA ATCTTGACTA AACTTTGTAT AGGTGTGGAC ATG Predicted gene structure (within gDNA segment 5843 to 3363): Exon 1 5076 5051 ( 26 n); cDNA 1 26 ( 26 n); score: 0.923 Intron 1 5050 4939 ( 112 n); Pd: 0.999 (s: 0), Pa: 0.959 (s: 0.94) Exon 2 4938 4882 ( 57 n); cDNA 27 83 ( 57 n); score: 0.947 Intron 2 4881 4768 ( 114 n); Pd: 0.871 (s: 0.96), Pa: 0.999 (s: 1.00) Exon 3 4767 4661 ( 107 n); cDNA 84 190 ( 107 n); score: 1.000 Intron 3 4660 4573 ( 88 n); Pd: 1.000 (s: 1.00), Pa: 0.429 (s: 0.98) Exon 4 4572 4180 ( 393 n); cDNA 191 583 ( 393 n); score: 0.980 MATCH C06HBa0024L21.1-4- SGN-E303030+ 0.980 583 1.000 C PGS_C06HBa0024L21.1-4-_SGN-E303030+ (5076 5051,4938 4882,4767 4661,4572 4180) Alignment (genomic DNA sequence = upper lines): CCAACTATGA CGACATGAAA TATGCTGTAA GCTATCTCCT GTTTCTTATT CTGTATAATT 5017 |||||||||| |||||||||| || | | CCAACTATGA CGACATGAAA TAGGGT.... .......... .......... .......... 26 ATCCTCAATT TTTGTTCAAG ATATTTGAAA TATGTTTATG CTCGACTAAC GAGTGTAATT 4957 .......... .......... .......... .......... .......... .......... 26 AATTTTCCTT GTATGTAGAT AAAAAAACTT GATGAATCTG AGTTTCGGAA TGCTTTTTCT 4897 || || ||||||| |||||||||| |||| | ||| |||||||||| .......... ........AT AATAAAACTT GATGAATCTG AGTTCCCGAA TGCTTTTTCT 68 CGTTCAACAA TTCGGGTATG ATGTGATTAT AACTCAAATG ATATGATTGC AGGATGCTTA 4837 |||||||||| ||||| CGTTCAACAA TTCGG..... .......... .......... .......... .......... 83 GTGCCTTTTC TTTTGTTAGC CTATACCATT GTCTTATGCT TCATAAAAAT ATTGCTTTGT 4777 .......... .......... .......... .......... .......... .......... 83 CTTATGTAGG TGAAGGAACA TGATTCTAGA AGCCGCAGCC GCAGCCGTTC TTACTCGAGA 4717 | |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .........G TGAAGGAACA TGATTCTAGA AGCCGCAGCC GCAGCCGTTC TTACTCGAGA 134 GGAAAGAGTG GTAGCCGTAG CCGCAGTCGA AGTTACAGTC GCAGCCGGAG CAGAAGGTAT 4657 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||| GGAAAGAGTG GTAGCCGTAG CCGCAGTCGA AGTTACAGTC GCAGCCGGAG CAGAAG.... 190 GTATTATGTA GTTTGCACGT TTTATAGCTT GTTACTTCAC CTTTGAATGC TACTATGTAT 4597 .......... .......... .......... .......... .......... .......... 190 CTCATTGCTG CTCTTTCCTA GCAGCAAATC TCCTAAAGCT AAGTCGTCAA AGCGTACAAG 4537 |||||| |||||||||| |||||| ||| |||||||||| .......... .......... ....CAAATC TCCTAAAGCT AAGTCGCCAA AGCGTACAAG 226 ATCTCGTTCT AGATCTGTCT CTTCTCAGCC CCGTTCTGGG TTAAAAGGAC GCTCTTTGTC 4477 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCTCGTTCT AGATCTGTCT CTTCTCAGCC CCGTTCTGGG TTAAAAGGAC GCTCTTTGTC 286 AAGGTAATCT TTCTTACTGG TCATATCTAC CCATTTTGTT GTTGGGGCAG GTTATGTAAA 4417 |||||||||| || ||||||| |||||||||| |||||||||| | ||||||| |||||||||| AAGGTAATCT TTATTACTGG TCATATCTAC CCATTTTGTT GAAGGGGCAG GTTATGTAAA 346 AGTAGCATAT AGTACAAGGT TAATGTATAT TTTTATGCAA GTCCTTGTAC TGGTCTTTTT 4357 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTAGCATAT AGTACAAGGT TAATGTATAT TTTTATGCAA GTCCTTGTAC TGGTCTTTTT 406 TTGAGTCAAA AGTCCTTGTG TCTATCAGTT TATCTTAATC ATTTTAATCT TTTCTTTGTG 4297 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGAGTCAAA AGTCCTTGTG TCTATCAGTT TATCTTAATC ATTTTAATCT TTTCTTTGTG 466 AAAGCCACCT GGGAATTAAC TGTTGCATCT TGCACCTCAT TTATTTAGTG GGAAATCAGC 4237 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| |||||||| | AAAGCCACCT GGGAATTAAC TGTTGCATCT TGCACCTCAT ATATTTAGTG GGAAATCACC 526 TGAGCACTTT GTTTCCAACC CTTAATCTTG ACTAGACTTT GTATAGTTGT GGACATG 4180 |||||||||| |||||||||| |||||||||| |||| ||||| |||||| ||| ||||||| TGAGCACTTT GTTTCCAACC CTTAATCTTG ACTAAACTTT GTATAGGTGT GGACATG 583 hqPGS_C06HBa0024L21.1-4-_SGN-E303030+ (5076 5051,4938 4882,4767 4661,4572 4180) ******************************************************************************** EST sequence 38 +strand 545 n (File: SGN-E270899+) 1 AACATTAAAG TTCTGATCCC TCATTCAGTT TGGATCAATA TCGTCCTTCC AAAATTGTAA 61 GTGAACCTTT TGGAAATTTG TCAAGATTCT AGATCAACGT GCAATGGCTC AGTGGGTAAC 121 TAAGCTGTCA TTAGCTAATA TGGTGCTCGT ATTGTAGTTT TAATAGGCTT TATATTATGG 181 TGAGGTACAA TTCTGCATCT TTTTTGGTGG CATAGAGATA GCCAATGTTA ATTTCATTCT 241 GCTTCAAGGT GTCTCCGTCC AAAAAAACCC AGTCTGCTTC AAGGTGATAG ATCTTTTTGA 301 ACCTAAGCAA TGTCAAACCA TTTGATAAAC CAGACAAGCT AGGGAACATC ACAAGTGCAG 361 AGTCCTGTAC ATCAGGATTG TTCTTCTTCT TCTAATTATG CTGTGTCTAA CTGTAATTGC 421 GGCTATCAAA TATGTGGTCA ACTGGTCATT CAGTTATGAA AAGATGTCTA GATACTGCAT 481 TTCAGAATCC ATTAGGAACA AAATAGTTGT TGGGTGTTGG ATGTAGAAGT TGGTTCTTCC 541 TATGC Predicted gene structure (within gDNA segment 4611 to 2776): Exon 1 3930 3386 ( 545 n); cDNA 1 545 ( 545 n); score: 0.994 MATCH C06HBa0024L21.1-4- SGN-E270899+ 0.994 545 1.000 C PGS_C06HBa0024L21.1-4-_SGN-E270899+ (3930 3386) Alignment (genomic DNA sequence = upper lines): AACATTAAGG TTCTGATCCC TCATTCAGTT TGGATCAATA TCGTCCTTCC AAAATTGTAA 3871 |||||||| | |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACATTAAAG TTCTGATCCC TCATTCAGTT TGGATCAATA TCGTCCTTCC AAAATTGTAA 60 GTGAACCTTT TGGAAATTTG TCAAGATTCT AGATCAACGT GCAATGGCTC AGTGGGTAAC 3811 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGAACCTTT TGGAAATTTG TCAAGATTCT AGATCAACGT GCAATGGCTC AGTGGGTAAC 120 TAAGCTGTCA TTAGCTAATA TGGTGCTCGT ATTGTAGTTT TAATAGGCTT TATATTATGG 3751 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAAGCTGTCA TTAGCTAATA TGGTGCTCGT ATTGTAGTTT TAATAGGCTT TATATTATGG 180 TGAGGTACAA TTCTGCATCT TTTTTGGTGG CATAGAGATA GCCAATGTTA ATTTCATTCT 3691 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAGGTACAA TTCTGCATCT TTTTTGGTGG CATAGAGATA GCCAATGTTA ATTTCATTCT 240 GCTTCAGGGT GTCTCCGTCC AAAAAAACCC AGTCTGCTTC AGGGTGATAG ATCTTTTTGA 3631 |||||| ||| |||||||||| |||||||||| |||||||||| | |||||||| |||||||||| GCTTCAAGGT GTCTCCGTCC AAAAAAACCC AGTCTGCTTC AAGGTGATAG ATCTTTTTGA 300 ACCTAAGCAA TGTCAAACCA TTTGATAAAC CAGACAAGCT AGGGAACATC ACAAGTGCAG 3571 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACCTAAGCAA TGTCAAACCA TTTGATAAAC CAGACAAGCT AGGGAACATC ACAAGTGCAG 360 AGTCCTGTAC ATCAGGATTG TTCTTCTTCT TCTAATTATG CTGTGTCTAA CTGTAATTGC 3511 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTCCTGTAC ATCAGGATTG TTCTTCTTCT TCTAATTATG CTGTGTCTAA CTGTAATTGC 420 GGCTATCAAA TATGTGGTCA ACTGGTCATT CAGTTATGAA AAGATGTCTA GATACTGCAT 3451 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGCTATCAAA TATGTGGTCA ACTGGTCATT CAGTTATGAA AAGATGTCTA GATACTGCAT 480 TTCAGAATCC ATTAGGAACA AAATAGTTGT TGGGTGTTGG ATGTAGAAGT TGGTTCTTCC 3391 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCAGAATCC ATTAGGAACA AAATAGTTGT TGGGTGTTGG ATGTAGAAGT TGGTTCTTCC 540 TATGC 3386 ||||| TATGC 545 hqPGS_C06HBa0024L21.1-4-_SGN-E270899+ (3930 3386) ******************************************************************************** EST sequence 34 +strand 596 n (File: SGN-E253820+) 1 AAAATTCCAC CAAGACCCCC TGGTTATGCT TTTGTTGAGT TTGAAGAGGC TCGTGATGCT 61 GAAGATGCTA TTCGTGGTCG TGATGGCTAT GATTTTGATG GGCACCGTCT GCGGGTTGAG 121 CTTGCACATG GCGGGCGTGG TAACTCATCA TCAAATGATC GTTATGGTGG TGGCGGTGGC 181 GGCCGTGGTC AGCGTGGTGG AGGAGTGTCA AGACGTTCAG ATTATCGAGT GTTAGTTACA 241 GGATTACCCC ATTCAGCATC GTGGCAGGAT CTCAAGGATC ACATGCGCCG TGCTGGGGAT 301 GTTTGTTTCT CCCAAGTTTT CCGTGACGGG AGTGGAACCA CTGGTATAAT TGATTATACA 361 AACTATGATG ACATGAAATA TGCTATCAAA AAGCTTGATG ACTCTGAGTT TCGAAATGCC 421 TTTTCTCGTG CGACAATTCG AGTTAAAGAA TATGACCGCA GTCGAAGTCG CAGCCGCAGT 481 CGCAGTCGCT CTTACTCCAG AGGGAAGAGT GTTAGTCGAA GCCGAAGCCG TAGCCGAAGT 541 AGAAGCCGAA GCAAGAGCAA AAGCAAATCT CCTAAAGTTA AGTCTTCAAA GCGCTC Predicted gene structure (within gDNA segment 8809 to 2506): Exon 1 8209 8171 ( 39 n); cDNA 1 39 ( 39 n); score: 0.974 Intron 1 8170 8074 ( 97 n); Pd: 0.999 (s: 0), Pa: 0.998 (s: 0.90) Exon 2 8073 7999 ( 75 n); cDNA 40 114 ( 75 n); score: 0.880 Intron 2 7998 7621 ( 378 n); Pd: 0.996 (s: 0.88), Pa: 0.996 (s: 0.82) Exon 3 7620 7494 ( 127 n); cDNA 115 229 ( 115 n); score: 0.661 Intron 3 7493 7413 ( 81 n); Pd: 0.994 (s: 0.58), Pa: 0.994 (s: 0.91) Exon 4 7412 7366 ( 47 n); cDNA 230 276 ( 47 n); score: 0.915 Intron 4 7365 7259 ( 107 n); Pd: 0.700 (s: 0.91), Pa: 0.998 (s: 0.92) Exon 5 7258 7201 ( 58 n); cDNA 277 334 ( 58 n); score: 0.914 Intron 5 7200 5101 (2100 n); Pd: 0.922 (s: 0.92), Pa: 0.926 (s: 0.86) Exon 6 5100 5051 ( 50 n); cDNA 335 384 ( 50 n); score: 0.860 Intron 6 5050 4939 ( 112 n); Pd: 0.999 (s: 0.86), Pa: 0.959 (s: 0.86) Exon 7 4938 4882 ( 57 n); cDNA 385 441 ( 57 n); score: 0.860 Intron 7 4881 4779 ( 103 n); Pd: 0.871 (s: 0.86), Pa: 0.000 (s: 0.60) Exon 8 4778 4661 ( 118 n); cDNA 442 557 ( 116 n); score: 0.686 Intron 8 4660 4579 ( 82 n); Pd: 1.000 (s: 0.70), Pa: 0.000 (s: 0) Exon 9 4578 4543 ( 36 n); cDNA 558 593 ( 36 n); score: 0.861 MATCH C06HBa0024L21.1-4- SGN-E253820+ 0.775 607 1.018 C PGS_C06HBa0024L21.1-4-_SGN-E253820+ (8209 8171,8073 7999,7620 7494,7412 7366,7258 7201,5100 5051,4938 4882,4778 4661,4578 4543) Alignment (genomic DNA sequence = upper lines): AAAATTCCAC CAAGACCCCC AGGTTATGCT TTTGTTGAGG TAAGTTTTGA CTGCATTGGC 8150 |||||||||| |||||||||| ||||||||| ||||||||| AAAATTCCAC CAAGACCCCC TGGTTATGCT TTTGTTGAG. .......... .......... 39 TAAAATGAAT TTCATTGGAT ATTTCCTTCT CAATTGTTAA CCTATTTTGA CATTGTTTTG 8090 .......... .......... .......... .......... .......... .......... 39 TTGGAACTAA ACACAGTTTG AAGAGGCACG CGATGCTGAG GATGCTATTC GTGGGCGCGA 8030 |||| ||||||| || |||||||| |||||||||| |||| || || .......... ......TTTG AAGAGGCTCG TGATGCTGAA GATGCTATTC GTGGTCGTGA 83 TGGCTATGAA TTTGATGGGC ATCGTTTGAG GGTTAGTAAA ATCTTAACAG CATATAGGAT 7970 ||||||||| |||||||||| | ||| || | | TGGCTATGAT TTTGATGGGC ACCGTCTGCG G......... .......... .......... 114 ACACACACAT GAATCAATTG TATCCTCTGT TTACTCTGAG AAGTATGATT GACTTGCATT 7910 .......... .......... .......... .......... .......... .......... 114 TTTGAATCAG GGTTTCCAAT TCTTGTATTA ATTGCATTTC GTTGACCCTA GCATTTCACC 7850 .......... .......... .......... .......... .......... .......... 114 TAAACCATTA TGTTTCTTTA TTAAATGCTT GTCCCAAATT AGTTGGGATC AGTTTTATAA 7790 .......... .......... .......... .......... .......... .......... 114 ATTGTCTGTA ACCATCCTAC TTTATCCAGG CGTATTTTTC TTTTCAAGCT TAGTTTGTCT 7730 .......... .......... .......... .......... .......... .......... 114 TTCAAGGCAA ATTAACATGT CTAATACATA TAAGACACCT AAATGCTAAA TAGTTTTCTT 7670 .......... .......... .......... .......... .......... .......... 114 TTTGAGGTGC TTAAGATCTA AGCCTACTGA AACTGTTACA TGTATGCAGG TTGAGCTTGC 7610 | |||||||||| .......... .......... .......... .......... .........G TTGAGCTTGC 125 ACATGGTGGG CGTGGTAACT CATCGTCAGA TCGTTATAAT AGTGGCAATA ATAGTGGCCA 7550 |||||| ||| |||||||||| |||| ||| | || || || || | |||| | ACATGGCGGG CGTGGTAACT CATCATCA-A -----ATGAT CGT---TATG GTGGTGG-C- 174 TAATGGTGGT CGTAATAATC ACAAATTTGG AGCGCCCAAA CGTACCGAGT ATCGAGGCAC 7490 ||| || ||| | | | || || | | | | ||| | || | |||||| -GGTGGCGGC CGTGGTCAGC GTGGTGGAGG AGTGTCAAGA CGTTCAGATT ATCGAG.... 229 GTATGTTATT AATGTGCACA TAATTTTCTT TATTGCATTT CATGCCTTCT TGATCTAATT 7430 .......... .......... .......... .......... .......... .......... 229 CACTTACTCA TTTTCAGTTT TAGTTACCGG ATTGCCCCAT TCAGCATCCT GGCAGGATCT 7370 | | ||||||| || ||| |||||| |||||||| | |||||||||| .......... .......TGT TAGTTACAGG ATTACCCCAT TCAGCATCGT GGCAGGATCT 272 CAAGGTGAGT GGTGTCTGTG TGGTAAATTA TAAGGACCGT GGCTAAAAGT GATCTTCCTT 7310 |||| CAAG...... .......... .......... .......... .......... .......... 276 TTCTGGTATC TTCTAGCTTC TGAATATTGG TATTCTATGT TTCTTATGTA GGATCATATG 7250 ||||| ||| .......... .......... .......... .......... .......... .GATCACATG 285 CGTCGAGCTG GGGATGTTTG TTTCTCACAA GTTTTCCGTG AGGGGAGTGG TAAGATAATT 7190 || || |||| |||||||||| |||||| ||| |||||||||| | ||||||| CGCCGTGCTG GGGATGTTTG TTTCTCCCAA GTTTTCCGTG ACGGGAGTG. .......... 334 TGCAACAGAT ACTAGTTTTA TGCTCCTCTT AATTGTCCCT TTGTTTTGTT TGTATAAGGG 7130 .......... .......... .......... .......... .......... .......... 334 TTTGTTTTTA CTATGCCAAA GGAACTTGCC TATATCAGGA CCTATATTGG TAAATTTGGT 7070 .......... .......... .......... .......... .......... .......... 334 AAATTAAGAG TCAAGTCTCT ATAACTACCC TTTCTCTTTT TTTCCTTTTC CGTCTTTCTG 7010 .......... .......... .......... .......... .......... .......... 334 TTGGGTTTTC TTCTTTGAGA AGTGGTTGGA GAAGGATGGA TATTTGATCC TTTTTTTTGA 6950 .......... .......... .......... .......... .......... .......... 334 GAATAGCAAT ATATTTTCTG TGGATAACTT GAATTTCAAT TGTTTTTATG GCTCTTTAAC 6890 .......... .......... .......... .......... .......... .......... 334 TTACTACCTT GAGCTGACTA TCTTTCATAA TGCAACTAGA AAGGCTTTCT CAAAGTAGAA 6830 .......... .......... .......... .......... .......... .......... 334 TCATTTCTTA AATCTTGTGT TGAATGTGAC TGTGGTTCAT CATTGGGTCT GCAAGTGTCT 6770 .......... .......... .......... .......... .......... .......... 334 TTCCCAACCA TATAACAGCT AATATTATCT TTCAGACCCA ATCAAAACCA AATCTTGTTC 6710 .......... .......... .......... .......... .......... .......... 334 TATGGCCCGT GAATAGATGA TATTTTTGGG CTATTGTTGA GAACAAAATT GCTGTACGCT 6650 .......... .......... .......... .......... .......... .......... 334 GCAGTAACGT GCATTAGTTA TATATTTGAT GACTTCTGGC TTAGTTTATA GTTTATAGTT 6590 .......... .......... .......... .......... .......... .......... 334 TATACTATAA TGTTTAGCCA ACTTGGCTGG ATAAAGTGAC TGCGTCACTC AGTTTGGATG 6530 .......... .......... .......... .......... .......... .......... 334 GGATAATGGG TGCTATTACC AATCTTGGTA AAATGGTCAG GTTTGATATA TTATATATCC 6470 .......... .......... .......... .......... .......... .......... 334 TTTGACTGAA GTTTGTCATT GTACATCATC ATTCAAAACA TAGTTCCATC CGTTTTAGTC 6410 .......... .......... .......... .......... .......... .......... 334 AGAAAACTAT TTTTCTCTTC TGGTGCCATA GTAATATAAT AGAACAAGAA AGAATTACAG 6350 .......... .......... .......... .......... .......... .......... 334 AAAGTTAAAA AGTATTAACA TAAAAAAAAA GTAGATGAAA AATTTGTTGG GGTAACGCAT 6290 .......... .......... .......... .......... .......... .......... 334 AAAGTAAAAA AAATAGCAGG GAAAAATAAA ATGGAGCAGA AAAAGAGAAA GGAGGGAAGT 6230 .......... .......... .......... .......... .......... .......... 334 CTAAAAGAAA TCCTTGGTTT GGGGTTGAGG AAAGACGGTA ATGTTTCAAC CCAGGTGTTG 6170 .......... .......... .......... .......... .......... .......... 334 TAGAAGAGTA GATTAATTAT TTTTTGGGGC ATTTGTTGGA GAGGTAAGTG GGAGCTCTGT 6110 .......... .......... .......... .......... .......... .......... 334 TGGACGATGA GGAGAAGATA GCAGGAAATA AGTGAGCTTA TTTTTTCATC TTCCATGTTG 6050 .......... .......... .......... .......... .......... .......... 334 AATAACATCC TGTGCTTACC TGTGTATTCC TCACTCTTTG AATAAATGTT GATGTGTGTC 5990 .......... .......... .......... .......... .......... .......... 334 TGGATGTAAT GCCTGGATTA TGTCCCGCCT GGTGATAGTG GTCCTCCATA ACAAGATAGT 5930 .......... .......... .......... .......... .......... .......... 334 ACTGCTATCT GGCTTATTGC ATGTTACCAA CCTTGAACAA GCCAAGATAA TGAAGAGGCT 5870 .......... .......... .......... .......... .......... .......... 334 AATCTAATAA GTGGGCTTAA CAATGGATAC ACCAAGAATA GGAGTGGGTC TGGCTCTAAT 5810 .......... .......... .......... .......... .......... .......... 334 ATCATACCAT GTTAAGTGGA AAATTTGGGC CCAACTCAAC TCCAAAAGGT ACCTTAGTGC 5750 .......... .......... .......... .......... .......... .......... 334 CAGATCATGC AATAAGATCT CTTTTTCCCT CTTTCCTTCA TGTTTCAGAT CATGCTAACT 5690 .......... .......... .......... .......... .......... .......... 334 CAACTCCAAA AGGTAGCTTA GTGCAAGATC ATGCAATAAG ATCTCTTTTT ACCTCTTTCC 5630 .......... .......... .......... .......... .......... .......... 334 TTTAATGTTT CAGATTATGC AATAAGATAA CTTTCCTTCT TTCCTTTAAT TGTTTCAGTT 5570 .......... .......... .......... .......... .......... .......... 334 AGCTTGCTAT TAGGTTTTAC ATAGAAAATT GTCATCATTT TTGTCAGGAC AAATATACTA 5510 .......... .......... .......... .......... .......... .......... 334 GAGCCTTTAT AATTAAGACA GTTAATAGAC AGATGGCAAA GATGGTTCGA CTCTAAAATA 5450 .......... .......... .......... .......... .......... .......... 334 GGAATTTAAT AGTTGATTTT ACCCTATATA AATGGAATTG AAAATAGTGA TTGCCACTCA 5390 .......... .......... .......... .......... .......... .......... 334 AAATCTAGGG TCAGCTGAGA TTTATTGGAT ATTTCAATTT TGTGGTTGTG ACTAAAATGG 5330 .......... .......... .......... .......... .......... .......... 334 CCCGAATGTA TGGCTGAGCA GTTTAAAGAC CTGTGGAAAT AATGTGCTTC AGATTTTTTT 5270 .......... .......... .......... .......... .......... .......... 334 TATTCTGTAA TCAAATGTGG TGCTGCCTTA TCTTTGAAAT AATTTCTTGT GCTTCTACTC 5210 .......... .......... .......... .......... .......... .......... 334 AATTTTTGTT GTGGCAAGCA CCCTACTCTT GCTATGACTT GTGAATTTAC TCTCCTTAAG 5150 .......... .......... .......... .......... .......... .......... 334 TGATTCTTTT GTGGTGGATG GTGCGCTAAC AATCAGTTTT GCTCTTCAGG GACCACTGGG 5090 | |||||||| .......... .......... .......... .......... .........G AACCACTGGT 345 ATTGTGGATT ATACCAACTA TGACGACATG AAATATGCTG TAAGCTATCT CCTGTTTCTT 5030 || | |||| |||| ||||| ||| |||||| ||||||||| ATAATTGATT ATACAAACTA TGATGACATG AAATATGCT. .......... .......... 384 ATTCTGTATA ATTATCCTCA ATTTTTGTTC AAGATATTTG AAATATGTTT ATGCTCGACT 4970 .......... .......... .......... .......... .......... .......... 384 AACGAGTGTA ATTAATTTTC CTTGTATGTA GATAAAAAAA CTTGATGAAT CTGAGTTTCG 4910 || ||||| |||||||| | |||||||||| .......... .......... .......... .ATCAAAAAG CTTGATGACT CTGAGTTTCG 413 GAATGCTTTT TCTCGTTCAA CAATTCGGGT ATGATGTGAT TATAACTCAA ATGATATGAT 4850 ||||| ||| |||||| | | ||||||| AAATGCCTTT TCTCGTGCGA CAATTCGA.. .......... .......... .......... 441 TGCAGGATGC TTAGTGCCTT TTCTTTTGTT AGCCTATACC ATTGTCTTAT GCTTCATAAA 4790 .......... .......... .......... .......... .......... .......... 441 AATATTGCTT TGTCTTATGT AGGTGAAGGA ACATGATTCT AGAAGCCGCA GCCGCAGCCG 4730 || | | | | ||| | | || | | ||||||| | ||||| || .......... .GT-TAAAGA ATATGACCGC AGTCGA-AGT CGCAGCCGCA GTCGCAGTCG 488 TTCTTACTCG AGAGGAAAGA GTGGTAGCCG TAGCCGCAGT CGAAGTTACA GTCGCAGCCG 4670 |||||||| ||||| |||| ||| ||| || ||||| || || || | || | ||||| CTCTTACTCC AGAGGGAAGA GTGTTAGTCG AAGCCGAAGC CGTAGCCGAA GTAGAAGCCG 548 GAGCAGAAGG TATGTATTAT GTAGTTTGCA CGTTTTATAG CTTGTTACTT CACCTTTGAA 4610 |||| || AAGCAAGAG. .......... .......... .......... .......... .......... 557 TGCTACTATG TATCTCATTG CTGCTCTTTC CTAGCAGCAA ATCTCCTAAA GCTAAGTCGT 4550 | ||||| |||||||||| | |||||| | .......... .......... .......... .CAAAAGCAA ATCTCCTAAA GTTAAGTCTT 586 CAAAGCG 4543 ||||||| CAAAGCG 593 hqPGS_C06HBa0024L21.1-4-_SGN-E253820+ (8209 8171,8073 7999,7620 7494,7412 7366,7258 7201,5100 5051,4938 4882,4778 4661,4578 4543) ******************************************************************************** EST sequence 28 +strand 688 n (File: SGN-E316156+) 1 CCTTCTCTAA GCGCTCTGTG TTTTCATCCT TCATCAATCT TCTAGTAAAG GAACAATGAG 61 TCGTTCAAGT AGGACGATTT ATGTTGGTAA TCTTCCTGGT GATATTCGTG AGCGAGAAGT 121 GGAGGATCTG TTCTACAAGT ATGGCCCGAT AGCACATATT GATCTGAAAA TTCCACCAAG 181 ACCCCCAGGT TATGCTTTTG TTGAGTTTGA AGAGGCACGC GATGCTGAGG ATGCTATTCG 241 TGGGCGCGAT GGCTATGAAT TTGATGGGCA TCGTTTGAGG GTTGAGCTTG CACATGGTGG 301 GCGTGGTAAC TCATCGTCAG ATCGTTATAA TAGTGGCAAT AATAGTGGCC ATAATGGTGG 361 TCGTAATAAT CACAAATTTG GAGCGCCCAA ACGTACCGAG TATCGAGTTT TAGTTACCGG 421 ATTGCCCCAT TCAGCATCCT GGCAGGATCT CAAGGATCAT ATGCGTCGAG CTGGGGATGT 481 TTGTTTCTCA CAAGTTTTCC GTGAGGGGAG TGGGACCACT GGGATTGTGG ATTATACCAA 541 CTATGACGAC ATGAAATATG CTATAAAAAA ACTTGATGAA TCTGAGTTTC GGAATGCTTT 601 TTCTCGTTCA ACAATTCGGG TGAAGGAACA TGATTCTAGA AGCCGCAGCC GCAGCCGTTC 661 TTACTCGAGA GGAAAGAGTG GTAGCCGT Predicted gene structure (within gDNA segment 9847 to 4089): Exon 1 9247 9198 ( 50 n); cDNA 1 50 ( 50 n); score: 1.000 Intron 1 9197 8413 ( 785 n); Pd: 0.980 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 2 8412 8324 ( 89 n); cDNA 51 139 ( 89 n); score: 1.000 Intron 2 8323 8237 ( 87 n); Pd: 1.000 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 3 8236 8171 ( 66 n); cDNA 140 205 ( 66 n); score: 1.000 Intron 3 8170 8074 ( 97 n); Pd: 0.999 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 4 8073 7999 ( 75 n); cDNA 206 280 ( 75 n); score: 1.000 Intron 4 7998 7621 ( 378 n); Pd: 0.996 (s: 1.00), Pa: 0.996 (s: 1.00) Exon 5 7620 7494 ( 127 n); cDNA 281 407 ( 127 n); score: 1.000 Intron 5 7493 7413 ( 81 n); Pd: 0.994 (s: 1.00), Pa: 0.994 (s: 1.00) Exon 6 7412 7366 ( 47 n); cDNA 408 454 ( 47 n); score: 1.000 Intron 6 7365 7259 ( 107 n); Pd: 0.700 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 7 7258 7201 ( 58 n); cDNA 455 512 ( 58 n); score: 1.000 Intron 7 7200 5101 (2100 n); Pd: 0.922 (s: 1.00), Pa: 0.926 (s: 1.00) Exon 8 5100 5051 ( 50 n); cDNA 513 562 ( 50 n); score: 1.000 Intron 8 5050 4939 ( 112 n); Pd: 0.999 (s: 1.00), Pa: 0.959 (s: 1.00) Exon 9 4938 4882 ( 57 n); cDNA 563 619 ( 57 n); score: 1.000 Intron 9 4881 4768 ( 114 n); Pd: 0.871 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 10 4767 4699 ( 69 n); cDNA 620 688 ( 69 n); score: 1.000 MATCH C06HBa0024L21.1-4- SGN-E316156+ 1.000 688 1.000 C PGS_C06HBa0024L21.1-4-_SGN-E316156+ (9247 9198,8412 8324,8236 8171,8073 7999,7620 7494,7412 7366,7258 7201,5100 5051,4938 4882,4767 4699) Alignment (genomic DNA sequence = upper lines): CCTTCTCTAA GCGCTCTGTG TTTTCATCCT TCATCAATCT TCTAGTAAAG GTACGTTCCT 9188 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCTTCTCTAA GCGCTCTGTG TTTTCATCCT TCATCAATCT TCTAGTAAAG .......... 50 TCGGTCTTTG TTAATGGAGG TCCGTTTAAT CGGCATCTAT CAAACGAAAT AGCTAACAAG 9128 .......... .......... .......... .......... .......... .......... 50 ATCTGTTTTT TAATTTTAGT TTCTTCCGTT TTGCTCATTT TACCCAGCGA AAAATGTATT 9068 .......... .......... .......... .......... .......... .......... 50 TCAATTCACT TAAAACGTTG TTCAGAGGCG GATCTAGCAT AGAATCAGTC TACATACAGG 9008 .......... .......... .......... .......... .......... .......... 50 AAAAATAGCA ATAAAGTATC TATACATAAT TTGTGTATGT AATTGTGTAT CCATTATTAG 8948 .......... .......... .......... .......... .......... .......... 50 TGTGTTCTGT ATGCAGGAAA TGTTTTTTTT CGTCTTGGAA AATAACCGGG TTTCTTACTT 8888 .......... .......... .......... .......... .......... .......... 50 AGTTGTGTTC GGTAGGCAAG CGAAAAATAT TAGTACAATT ATTTGTATGT AATCTAGACA 8828 .......... .......... .......... .......... .......... .......... 50 AATACTCTTG AGTTGGGTGG TGGGGATGGT GGCTAAGAGT GTGGTGGTGA AGATGAGGTT 8768 .......... .......... .......... .......... .......... .......... 50 GGTTGGAGGG TGGGGAGAAC ACAATCAATG TGGAATTTTA TTTGTTGAAC CTGTTTTCAC 8708 .......... .......... .......... .......... .......... .......... 50 TACTTCCATT GAGGAAGTCA AATTTTTTTA TTTTGAAGCA ACTTAATTTC CTAGAGAAGA 8648 .......... .......... .......... .......... .......... .......... 50 TGTTTTCCAT AAATTTTACC AACCATGAGA AAACTTGGAA ACATTTTTCT GGAAAATGGT 8588 .......... .......... .......... .......... .......... .......... 50 TTCATTCGTA TCTAACACAC CCTATATGTA TGTTTGTTAC TTTGTTTATG TATTTGTGTG 8528 .......... .......... .......... .......... .......... .......... 50 CGAATCAAGT TGATTGCTCA AGTTGTGTTT TTGTGACTTA AGTTCTTCAT GAATTTTATC 8468 .......... .......... .......... .......... .......... .......... 50 CATTTTTGTT TCTCAGGTGG GTTTTGATTG TATTTTTTTG TTGAATTATT TTTAGGAACA 8408 ||||| .......... .......... .......... .......... .......... .....GAACA 55 ATGAGTCGTT CAAGTAGGAC GATTTATGTT GGTAATCTTC CTGGTGATAT TCGTGAGCGA 8348 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGAGTCGTT CAAGTAGGAC GATTTATGTT GGTAATCTTC CTGGTGATAT TCGTGAGCGA 115 GAAGTGGAGG ATCTGTTCTA CAAGGTACTT GTATAACACT TAGCTTCATA CTTTAGTTGG 8288 |||||||||| |||||||||| |||| GAAGTGGAGG ATCTGTTCTA CAAG...... .......... .......... .......... 139 ATGTCATTTA CTATGCTCAT AAACTTAAAT GTGTGTGGCG TATAATTGTA GTATGGCCCG 8228 ||||||||| .......... .......... .......... .......... .......... .TATGGCCCG 148 ATAGCACATA TTGATCTGAA AATTCCACCA AGACCCCCAG GTTATGCTTT TGTTGAGGTA 8168 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||| ATAGCACATA TTGATCTGAA AATTCCACCA AGACCCCCAG GTTATGCTTT TGTTGAG... 205 AGTTTTGACT GCATTGGCTA AAATGAATTT CATTGGATAT TTCCTTCTCA ATTGTTAACC 8108 .......... .......... .......... .......... .......... .......... 205 TATTTTGACA TTGTTTTGTT GGAACTAAAC ACAGTTTGAA GAGGCACGCG ATGCTGAGGA 8048 |||||| |||||||||| |||||||||| .......... .......... .......... ....TTTGAA GAGGCACGCG ATGCTGAGGA 231 TGCTATTCGT GGGCGCGATG GCTATGAATT TGATGGGCAT CGTTTGAGGG TTAGTAAAAT 7988 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| TGCTATTCGT GGGCGCGATG GCTATGAATT TGATGGGCAT CGTTTGAGG. .......... 280 CTTAACAGCA TATAGGATAC ACACACATGA ATCAATTGTA TCCTCTGTTT ACTCTGAGAA 7928 .......... .......... .......... .......... .......... .......... 280 GTATGATTGA CTTGCATTTT TGAATCAGGG TTTCCAATTC TTGTATTAAT TGCATTTCGT 7868 .......... .......... .......... .......... .......... .......... 280 TGACCCTAGC ATTTCACCTA AACCATTATG TTTCTTTATT AAATGCTTGT CCCAAATTAG 7808 .......... .......... .......... .......... .......... .......... 280 TTGGGATCAG TTTTATAAAT TGTCTGTAAC CATCCTACTT TATCCAGGCG TATTTTTCTT 7748 .......... .......... .......... .......... .......... .......... 280 TTCAAGCTTA GTTTGTCTTT CAAGGCAAAT TAACATGTCT AATACATATA AGACACCTAA 7688 .......... .......... .......... .......... .......... .......... 280 ATGCTAAATA GTTTTCTTTT TGAGGTGCTT AAGATCTAAG CCTACTGAAA CTGTTACATG 7628 .......... .......... .......... .......... .......... .......... 280 TATGCAGGTT GAGCTTGCAC ATGGTGGGCG TGGTAACTCA TCGTCAGATC GTTATAATAG 7568 ||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......GTT GAGCTTGCAC ATGGTGGGCG TGGTAACTCA TCGTCAGATC GTTATAATAG 333 TGGCAATAAT AGTGGCCATA ATGGTGGTCG TAATAATCAC AAATTTGGAG CGCCCAAACG 7508 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGCAATAAT AGTGGCCATA ATGGTGGTCG TAATAATCAC AAATTTGGAG CGCCCAAACG 393 TACCGAGTAT CGAGGCACGT ATGTTATTAA TGTGCACATA ATTTTCTTTA TTGCATTTCA 7448 |||||||||| |||| TACCGAGTAT CGAG...... .......... .......... .......... .......... 407 TGCCTTCTTG ATCTAATTCA CTTACTCATT TTCAGTTTTA GTTACCGGAT TGCCCCATTC 7388 ||||| |||||||||| |||||||||| .......... .......... .......... .....TTTTA GTTACCGGAT TGCCCCATTC 432 AGCATCCTGG CAGGATCTCA AGGTGAGTGG TGTCTGTGTG GTAAATTATA AGGACCGTGG 7328 |||||||||| |||||||||| || AGCATCCTGG CAGGATCTCA AG........ .......... .......... .......... 454 CTAAAAGTGA TCTTCCTTTT CTGGTATCTT CTAGCTTCTG AATATTGGTA TTCTATGTTT 7268 .......... .......... .......... .......... .......... .......... 454 CTTATGTAGG ATCATATGCG TCGAGCTGGG GATGTTTGTT TCTCACAAGT TTTCCGTGAG 7208 | |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .........G ATCATATGCG TCGAGCTGGG GATGTTTGTT TCTCACAAGT TTTCCGTGAG 505 GGGAGTGGTA AGATAATTTG CAACAGATAC TAGTTTTATG CTCCTCTTAA TTGTCCCTTT 7148 ||||||| GGGAGTG... .......... .......... .......... .......... .......... 512 GTTTTGTTTG TATAAGGGTT TGTTTTTACT ATGCCAAAGG AACTTGCCTA TATCAGGACC 7088 .......... .......... .......... .......... .......... .......... 512 TATATTGGTA AATTTGGTAA ATTAAGAGTC AAGTCTCTAT AACTACCCTT TCTCTTTTTT 7028 .......... .......... .......... .......... .......... .......... 512 TCCTTTTCCG TCTTTCTGTT GGGTTTTCTT CTTTGAGAAG TGGTTGGAGA AGGATGGATA 6968 .......... .......... .......... .......... .......... .......... 512 TTTGATCCTT TTTTTTGAGA ATAGCAATAT ATTTTCTGTG GATAACTTGA ATTTCAATTG 6908 .......... .......... .......... .......... .......... .......... 512 TTTTTATGGC TCTTTAACTT ACTACCTTGA GCTGACTATC TTTCATAATG CAACTAGAAA 6848 .......... .......... .......... .......... .......... .......... 512 GGCTTTCTCA AAGTAGAATC ATTTCTTAAA TCTTGTGTTG AATGTGACTG TGGTTCATCA 6788 .......... .......... .......... .......... .......... .......... 512 TTGGGTCTGC AAGTGTCTTT CCCAACCATA TAACAGCTAA TATTATCTTT CAGACCCAAT 6728 .......... .......... .......... .......... .......... .......... 512 CAAAACCAAA TCTTGTTCTA TGGCCCGTGA ATAGATGATA TTTTTGGGCT ATTGTTGAGA 6668 .......... .......... .......... .......... .......... .......... 512 ACAAAATTGC TGTACGCTGC AGTAACGTGC ATTAGTTATA TATTTGATGA CTTCTGGCTT 6608 .......... .......... .......... .......... .......... .......... 512 AGTTTATAGT TTATAGTTTA TACTATAATG TTTAGCCAAC TTGGCTGGAT AAAGTGACTG 6548 .......... .......... .......... .......... .......... .......... 512 CGTCACTCAG TTTGGATGGG ATAATGGGTG CTATTACCAA TCTTGGTAAA ATGGTCAGGT 6488 .......... .......... .......... .......... .......... .......... 512 TTGATATATT ATATATCCTT TGACTGAAGT TTGTCATTGT ACATCATCAT TCAAAACATA 6428 .......... .......... .......... .......... .......... .......... 512 GTTCCATCCG TTTTAGTCAG AAAACTATTT TTCTCTTCTG GTGCCATAGT AATATAATAG 6368 .......... .......... .......... .......... .......... .......... 512 AACAAGAAAG AATTACAGAA AGTTAAAAAG TATTAACATA AAAAAAAAGT AGATGAAAAA 6308 .......... .......... .......... .......... .......... .......... 512 TTTGTTGGGG TAACGCATAA AGTAAAAAAA ATAGCAGGGA AAAATAAAAT GGAGCAGAAA 6248 .......... .......... .......... .......... .......... .......... 512 AAGAGAAAGG AGGGAAGTCT AAAAGAAATC CTTGGTTTGG GGTTGAGGAA AGACGGTAAT 6188 .......... .......... .......... .......... .......... .......... 512 GTTTCAACCC AGGTGTTGTA GAAGAGTAGA TTAATTATTT TTTGGGGCAT TTGTTGGAGA 6128 .......... .......... .......... .......... .......... .......... 512 GGTAAGTGGG AGCTCTGTTG GACGATGAGG AGAAGATAGC AGGAAATAAG TGAGCTTATT 6068 .......... .......... .......... .......... .......... .......... 512 TTTTCATCTT CCATGTTGAA TAACATCCTG TGCTTACCTG TGTATTCCTC ACTCTTTGAA 6008 .......... .......... .......... .......... .......... .......... 512 TAAATGTTGA TGTGTGTCTG GATGTAATGC CTGGATTATG TCCCGCCTGG TGATAGTGGT 5948 .......... .......... .......... .......... .......... .......... 512 CCTCCATAAC AAGATAGTAC TGCTATCTGG CTTATTGCAT GTTACCAACC TTGAACAAGC 5888 .......... .......... .......... .......... .......... .......... 512 CAAGATAATG AAGAGGCTAA TCTAATAAGT GGGCTTAACA ATGGATACAC CAAGAATAGG 5828 .......... .......... .......... .......... .......... .......... 512 AGTGGGTCTG GCTCTAATAT CATACCATGT TAAGTGGAAA ATTTGGGCCC AACTCAACTC 5768 .......... .......... .......... .......... .......... .......... 512 CAAAAGGTAC CTTAGTGCCA GATCATGCAA TAAGATCTCT TTTTCCCTCT TTCCTTCATG 5708 .......... .......... .......... .......... .......... .......... 512 TTTCAGATCA TGCTAACTCA ACTCCAAAAG GTAGCTTAGT GCAAGATCAT GCAATAAGAT 5648 .......... .......... .......... .......... .......... .......... 512 CTCTTTTTAC CTCTTTCCTT TAATGTTTCA GATTATGCAA TAAGATAACT TTCCTTCTTT 5588 .......... .......... .......... .......... .......... .......... 512 CCTTTAATTG TTTCAGTTAG CTTGCTATTA GGTTTTACAT AGAAAATTGT CATCATTTTT 5528 .......... .......... .......... .......... .......... .......... 512 GTCAGGACAA ATATACTAGA GCCTTTATAA TTAAGACAGT TAATAGACAG ATGGCAAAGA 5468 .......... .......... .......... .......... .......... .......... 512 TGGTTCGACT CTAAAATAGG AATTTAATAG TTGATTTTAC CCTATATAAA TGGAATTGAA 5408 .......... .......... .......... .......... .......... .......... 512 AATAGTGATT GCCACTCAAA ATCTAGGGTC AGCTGAGATT TATTGGATAT TTCAATTTTG 5348 .......... .......... .......... .......... .......... .......... 512 TGGTTGTGAC TAAAATGGCC CGAATGTATG GCTGAGCAGT TTAAAGACCT GTGGAAATAA 5288 .......... .......... .......... .......... .......... .......... 512 TGTGCTTCAG ATTTTTTTTA TTCTGTAATC AAATGTGGTG CTGCCTTATC TTTGAAATAA 5228 .......... .......... .......... .......... .......... .......... 512 TTTCTTGTGC TTCTACTCAA TTTTTGTTGT GGCAAGCACC CTACTCTTGC TATGACTTGT 5168 .......... .......... .......... .......... .......... .......... 512 GAATTTACTC TCCTTAAGTG ATTCTTTTGT GGTGGATGGT GCGCTAACAA TCAGTTTTGC 5108 .......... .......... .......... .......... .......... .......... 512 TCTTCAGGGA CCACTGGGAT TGTGGATTAT ACCAACTATG ACGACATGAA ATATGCTGTA 5048 ||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||| .......GGA CCACTGGGAT TGTGGATTAT ACCAACTATG ACGACATGAA ATATGCT... 562 AGCTATCTCC TGTTTCTTAT TCTGTATAAT TATCCTCAAT TTTTGTTCAA GATATTTGAA 4988 .......... .......... .......... .......... .......... .......... 562 ATATGTTTAT GCTCGACTAA CGAGTGTAAT TAATTTTCCT TGTATGTAGA TAAAAAAACT 4928 | |||||||||| .......... .......... .......... .......... .........A TAAAAAAACT 573 TGATGAATCT GAGTTTCGGA ATGCTTTTTC TCGTTCAACA ATTCGGGTAT GATGTGATTA 4868 |||||||||| |||||||||| |||||||||| |||||||||| |||||| TGATGAATCT GAGTTTCGGA ATGCTTTTTC TCGTTCAACA ATTCGG.... .......... 619 TAACTCAAAT GATATGATTG CAGGATGCTT AGTGCCTTTT CTTTTGTTAG CCTATACCAT 4808 .......... .......... .......... .......... .......... .......... 619 TGTCTTATGC TTCATAAAAA TATTGCTTTG TCTTATGTAG GTGAAGGAAC ATGATTCTAG 4748 |||||||||| |||||||||| .......... .......... .......... .......... GTGAAGGAAC ATGATTCTAG 639 AAGCCGCAGC CGCAGCCGTT CTTACTCGAG AGGAAAGAGT GGTAGCCGT 4699 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| AAGCCGCAGC CGCAGCCGTT CTTACTCGAG AGGAAAGAGT GGTAGCCGT 688 hqPGS_C06HBa0024L21.1-4-_SGN-E316156+ (9247 9198,8412 8324,8236 8171,8073 7999,7620 7494,7412 7366,7258 7201,5100 5051,4938 4882,4767 4699) ******************************************************************************** EST sequence 39 +strand 582 n (File: SGN-E271755+) 1 TCCCAGGAAC AATGAGTCGG TCGAGTAGGA CACTTTATGT TGGCAATCTT CCTGGTGATG 61 GGCGTGAGCG TGAAGTGGAA GATCTCTTTT ACAAGTATGG ACCGATTGCA CATATTGAGC 121 TGAAAATTCC ACCAAGACCC CCTGGTTATG CTTTTGTTGA GTTTGAAGAG GCTCGTGATG 181 CTGAAGATGC TATTCGTGGT CGTGATGGCT ATGATTTTGA TGGGCACCGT CTGCGGGTTG 241 AGCTTGCACA TGGCGGGCGT GGTAACTCAT CATCAAATGA TCGTTATGGT GGTGGCGGTG 301 GCGGCCGTGG TCAGCGTGGT GGAGGAGTGT CAAGACGTTC AGATTATCGA GTGTTAGTTA 361 CAGGATTACC CCATTCAGCA TCGTGGCAGG ATCTCAAGGA TCACATGCGC CGTGCTGGGG 421 ATGTTTGTTT CTCCCAAGTT TTCCGTGACG GGAGTGGAAC CACTGGTATA ATTGATTATA 481 CAAACTATGA TGACATGAAA TATGCTATCA AAAAGCTTGA TGACTCTGAG TTTCGAAATG 541 CCTTTTCTCG TGCGACAATT CGAGTTAAAG AATATGACCG CA Predicted gene structure (within gDNA segment 9883 to 3866): Exon 1 8414 8324 ( 91 n); cDNA 5 95 ( 91 n); score: 0.868 Intron 1 8323 8237 ( 87 n); Pd: 1.000 (s: 0.86), Pa: 0.999 (s: 0.92) Exon 2 8236 8171 ( 66 n); cDNA 96 161 ( 66 n); score: 0.939 Intron 2 8170 8074 ( 97 n); Pd: 0.999 (s: 0.96), Pa: 0.998 (s: 0.90) Exon 3 8073 7999 ( 75 n); cDNA 162 236 ( 75 n); score: 0.880 Intron 3 7998 7621 ( 378 n); Pd: 0.996 (s: 0.88), Pa: 0.996 (s: 0.82) Exon 4 7620 7494 ( 127 n); cDNA 237 351 ( 115 n); score: 0.661 Intron 4 7493 7413 ( 81 n); Pd: 0.994 (s: 0.58), Pa: 0.994 (s: 0.91) Exon 5 7412 7366 ( 47 n); cDNA 352 398 ( 47 n); score: 0.915 Intron 5 7365 7259 ( 107 n); Pd: 0.700 (s: 0.91), Pa: 0.998 (s: 0.92) Exon 6 7258 7201 ( 58 n); cDNA 399 456 ( 58 n); score: 0.914 Intron 6 7200 5101 (2100 n); Pd: 0.922 (s: 0.92), Pa: 0.926 (s: 0.86) Exon 7 5100 5051 ( 50 n); cDNA 457 506 ( 50 n); score: 0.860 Intron 7 5050 4939 ( 112 n); Pd: 0.999 (s: 0.86), Pa: 0.959 (s: 0.86) Exon 8 4938 4882 ( 57 n); cDNA 507 563 ( 57 n); score: 0.860 Intron 8 4881 4768 ( 114 n); Pd: 0.871 (s: 0.86), Pa: 0.999 (s: 0) Exon 9 4767 4754 ( 14 n); cDNA 564 577 ( 14 n); score: 0.786 MATCH C06HBa0024L21.1-4- SGN-E271755+ 0.832 585 1.005 C PGS_C06HBa0024L21.1-4-_SGN-E271755+ (8414 8324,8236 8171,8073 7999,7620 7494,7412 7366,7258 7201,5100 5051,4938 4882,4767 4754) Alignment (genomic DNA sequence = upper lines): AGGAACAATG AGTCGTTCAA GTAGGACGAT TTATGTTGGT AATCTTCCTG GTGATATTCG 8355 |||||||||| ||||| || | ||||||| | ||||||||| |||||||||| ||||| || AGGAACAATG AGTCGGTCGA GTAGGACACT TTATGTTGGC AATCTTCCTG GTGATGGGCG 64 TGAGCGAGAA GTGGAGGATC TGTTCTACAA GGTACTTGTA TAACACTTAG CTTCATACTT 8295 |||||| ||| ||||| |||| | || ||||| | TGAGCGTGAA GTGGAAGATC TCTTTTACAA G......... .......... .......... 95 TAGTTGGATG TCATTTACTA TGCTCATAAA CTTAAATGTG TGTGGCGTAT AATTGTAGTA 8235 || .......... .......... .......... .......... .......... ........TA 97 TGGCCCGATA GCACATATTG ATCTGAAAAT TCCACCAAGA CCCCCAGGTT ATGCTTTTGT 8175 ||| ||||| |||||||||| | |||||||| |||||||||| ||||| |||| |||||||||| TGGACCGATT GCACATATTG AGCTGAAAAT TCCACCAAGA CCCCCTGGTT ATGCTTTTGT 157 TGAGGTAAGT TTTGACTGCA TTGGCTAAAA TGAATTTCAT TGGATATTTC CTTCTCAATT 8115 |||| TGAG...... .......... .......... .......... .......... .......... 161 GTTAACCTAT TTTGACATTG TTTTGTTGGA ACTAAACACA GTTTGAAGAG GCACGCGATG 8055 ||||||||| || || |||| .......... .......... .......... .......... .TTTGAAGAG GCTCGTGATG 180 CTGAGGATGC TATTCGTGGG CGCGATGGCT ATGAATTTGA TGGGCATCGT TTGAGGGTTA 7995 |||| ||||| ||||||||| || ||||||| |||| ||||| |||||| ||| || || CTGAAGATGC TATTCGTGGT CGTGATGGCT ATGATTTTGA TGGGCACCGT CTGCGG.... 236 GTAAAATCTT AACAGCATAT AGGATACACA CACATGAATC AATTGTATCC TCTGTTTACT 7935 .......... .......... .......... .......... .......... .......... 236 CTGAGAAGTA TGATTGACTT GCATTTTTGA ATCAGGGTTT CCAATTCTTG TATTAATTGC 7875 .......... .......... .......... .......... .......... .......... 236 ATTTCGTTGA CCCTAGCATT TCACCTAAAC CATTATGTTT CTTTATTAAA TGCTTGTCCC 7815 .......... .......... .......... .......... .......... .......... 236 AAATTAGTTG GGATCAGTTT TATAAATTGT CTGTAACCAT CCTACTTTAT CCAGGCGTAT 7755 .......... .......... .......... .......... .......... .......... 236 TTTTCTTTTC AAGCTTAGTT TGTCTTTCAA GGCAAATTAA CATGTCTAAT ACATATAAGA 7695 .......... .......... .......... .......... .......... .......... 236 CACCTAAATG CTAAATAGTT TTCTTTTTGA GGTGCTTAAG ATCTAAGCCT ACTGAAACTG 7635 .......... .......... .......... .......... .......... .......... 236 TTACATGTAT GCAGGTTGAG CTTGCACATG GTGGGCGTGG TAACTCATCG TCAGATCGTT 7575 |||||| |||||||||| | |||||||| ||||||||| ||| | .......... ....GTTGAG CTTGCACATG GCGGGCGTGG TAACTCATCA TCA-A----- 276 ATAATAGTGG CAATAATAGT GGCCATAATG GTGGTCGTAA TAATCACAAA TTTGGAGCGC 7515 || || || || | || || | || | || ||| | | | |||| | ATGATCGT-- -TATGGTGGT GG-C--GGTG GCGGCCGTGG TCAGCGTGGT GGAGGAGTGT 330 CCAAACGTAC CGAGTATCGA GGCACGTATG TTATTAATGT GCACATAATT TTCTTTATTG 7455 | | |||| | || |||||| | CAAGACGTTC AGATTATCGA G......... .......... .......... .......... 351 CATTTCATGC CTTCTTGATC TAATTCACTT ACTCATTTTC AGTTTTAGTT ACCGGATTGC 7395 | |||||| || ||||| | .......... .......... .......... .......... ..TGTTAGTT ACAGGATTAC 369 CCCATTCAGC ATCCTGGCAG GATCTCAAGG TGAGTGGTGT CTGTGTGGTA AATTATAAGG 7335 |||||||||| ||| |||||| ||||||||| CCCATTCAGC ATCGTGGCAG GATCTCAAG. .......... .......... .......... 398 ACCGTGGCTA AAAGTGATCT TCCTTTTCTG GTATCTTCTA GCTTCTGAAT ATTGGTATTC 7275 .......... .......... .......... .......... .......... .......... 398 TATGTTTCTT ATGTAGGATC ATATGCGTCG AGCTGGGGAT GTTTGTTTCT CACAAGTTTT 7215 |||| | ||||| || ||||||||| |||||||||| | |||||||| .......... ......GATC ACATGCGCCG TGCTGGGGAT GTTTGTTTCT CCCAAGTTTT 442 CCGTGAGGGG AGTGGTAAGA TAATTTGCAA CAGATACTAG TTTTATGCTC CTCTTAATTG 7155 |||||| ||| |||| CCGTGACGGG AGTG...... .......... .......... .......... .......... 456 TCCCTTTGTT TTGTTTGTAT AAGGGTTTGT TTTTACTATG CCAAAGGAAC TTGCCTATAT 7095 .......... .......... .......... .......... .......... .......... 456 CAGGACCTAT ATTGGTAAAT TTGGTAAATT AAGAGTCAAG TCTCTATAAC TACCCTTTCT 7035 .......... .......... .......... .......... .......... .......... 456 CTTTTTTTCC TTTTCCGTCT TTCTGTTGGG TTTTCTTCTT TGAGAAGTGG TTGGAGAAGG 6975 .......... .......... .......... .......... .......... .......... 456 ATGGATATTT GATCCTTTTT TTTGAGAATA GCAATATATT TTCTGTGGAT AACTTGAATT 6915 .......... .......... .......... .......... .......... .......... 456 TCAATTGTTT TTATGGCTCT TTAACTTACT ACCTTGAGCT GACTATCTTT CATAATGCAA 6855 .......... .......... .......... .......... .......... .......... 456 CTAGAAAGGC TTTCTCAAAG TAGAATCATT TCTTAAATCT TGTGTTGAAT GTGACTGTGG 6795 .......... .......... .......... .......... .......... .......... 456 TTCATCATTG GGTCTGCAAG TGTCTTTCCC AACCATATAA CAGCTAATAT TATCTTTCAG 6735 .......... .......... .......... .......... .......... .......... 456 ACCCAATCAA AACCAAATCT TGTTCTATGG CCCGTGAATA GATGATATTT TTGGGCTATT 6675 .......... .......... .......... .......... .......... .......... 456 GTTGAGAACA AAATTGCTGT ACGCTGCAGT AACGTGCATT AGTTATATAT TTGATGACTT 6615 .......... .......... .......... .......... .......... .......... 456 CTGGCTTAGT TTATAGTTTA TAGTTTATAC TATAATGTTT AGCCAACTTG GCTGGATAAA 6555 .......... .......... .......... .......... .......... .......... 456 GTGACTGCGT CACTCAGTTT GGATGGGATA ATGGGTGCTA TTACCAATCT TGGTAAAATG 6495 .......... .......... .......... .......... .......... .......... 456 GTCAGGTTTG ATATATTATA TATCCTTTGA CTGAAGTTTG TCATTGTACA TCATCATTCA 6435 .......... .......... .......... .......... .......... .......... 456 AAACATAGTT CCATCCGTTT TAGTCAGAAA ACTATTTTTC TCTTCTGGTG CCATAGTAAT 6375 .......... .......... .......... .......... .......... .......... 456 ATAATAGAAC AAGAAAGAAT TACAGAAAGT TAAAAAGTAT TAACATAAAA AAAAAGTAGA 6315 .......... .......... .......... .......... .......... .......... 456 TGAAAAATTT GTTGGGGTAA CGCATAAAGT AAAAAAAATA GCAGGGAAAA ATAAAATGGA 6255 .......... .......... .......... .......... .......... .......... 456 GCAGAAAAAG AGAAAGGAGG GAAGTCTAAA AGAAATCCTT GGTTTGGGGT TGAGGAAAGA 6195 .......... .......... .......... .......... .......... .......... 456 CGGTAATGTT TCAACCCAGG TGTTGTAGAA GAGTAGATTA ATTATTTTTT GGGGCATTTG 6135 .......... .......... .......... .......... .......... .......... 456 TTGGAGAGGT AAGTGGGAGC TCTGTTGGAC GATGAGGAGA AGATAGCAGG AAATAAGTGA 6075 .......... .......... .......... .......... .......... .......... 456 GCTTATTTTT TCATCTTCCA TGTTGAATAA CATCCTGTGC TTACCTGTGT ATTCCTCACT 6015 .......... .......... .......... .......... .......... .......... 456 CTTTGAATAA ATGTTGATGT GTGTCTGGAT GTAATGCCTG GATTATGTCC CGCCTGGTGA 5955 .......... .......... .......... .......... .......... .......... 456 TAGTGGTCCT CCATAACAAG ATAGTACTGC TATCTGGCTT ATTGCATGTT ACCAACCTTG 5895 .......... .......... .......... .......... .......... .......... 456 AACAAGCCAA GATAATGAAG AGGCTAATCT AATAAGTGGG CTTAACAATG GATACACCAA 5835 .......... .......... .......... .......... .......... .......... 456 GAATAGGAGT GGGTCTGGCT CTAATATCAT ACCATGTTAA GTGGAAAATT TGGGCCCAAC 5775 .......... .......... .......... .......... .......... .......... 456 TCAACTCCAA AAGGTACCTT AGTGCCAGAT CATGCAATAA GATCTCTTTT TCCCTCTTTC 5715 .......... .......... .......... .......... .......... .......... 456 CTTCATGTTT CAGATCATGC TAACTCAACT CCAAAAGGTA GCTTAGTGCA AGATCATGCA 5655 .......... .......... .......... .......... .......... .......... 456 ATAAGATCTC TTTTTACCTC TTTCCTTTAA TGTTTCAGAT TATGCAATAA GATAACTTTC 5595 .......... .......... .......... .......... .......... .......... 456 CTTCTTTCCT TTAATTGTTT CAGTTAGCTT GCTATTAGGT TTTACATAGA AAATTGTCAT 5535 .......... .......... .......... .......... .......... .......... 456 CATTTTTGTC AGGACAAATA TACTAGAGCC TTTATAATTA AGACAGTTAA TAGACAGATG 5475 .......... .......... .......... .......... .......... .......... 456 GCAAAGATGG TTCGACTCTA AAATAGGAAT TTAATAGTTG ATTTTACCCT ATATAAATGG 5415 .......... .......... .......... .......... .......... .......... 456 AATTGAAAAT AGTGATTGCC ACTCAAAATC TAGGGTCAGC TGAGATTTAT TGGATATTTC 5355 .......... .......... .......... .......... .......... .......... 456 AATTTTGTGG TTGTGACTAA AATGGCCCGA ATGTATGGCT GAGCAGTTTA AAGACCTGTG 5295 .......... .......... .......... .......... .......... .......... 456 GAAATAATGT GCTTCAGATT TTTTTTATTC TGTAATCAAA TGTGGTGCTG CCTTATCTTT 5235 .......... .......... .......... .......... .......... .......... 456 GAAATAATTT CTTGTGCTTC TACTCAATTT TTGTTGTGGC AAGCACCCTA CTCTTGCTAT 5175 .......... .......... .......... .......... .......... .......... 456 GACTTGTGAA TTTACTCTCC TTAAGTGATT CTTTTGTGGT GGATGGTGCG CTAACAATCA 5115 .......... .......... .......... .......... .......... .......... 456 GTTTTGCTCT TCAGGGACCA CTGGGATTGT GGATTATACC AACTATGACG ACATGAAATA 5055 | |||| |||| || | |||||||| |||||||| | |||||||||| .......... ....GAACCA CTGGTATAAT TGATTATACA AACTATGATG ACATGAAATA 502 TGCTGTAAGC TATCTCCTGT TTCTTATTCT GTATAATTAT CCTCAATTTT TGTTCAAGAT 4995 |||| TGCT...... .......... .......... .......... .......... .......... 506 ATTTGAAATA TGTTTATGCT CGACTAACGA GTGTAATTAA TTTTCCTTGT ATGTAGATAA 4935 || | .......... .......... .......... .......... .......... ......ATCA 510 AAAAACTTGA TGAATCTGAG TTTCGGAATG CTTTTTCTCG TTCAACAATT CGGGTATGAT 4875 |||| ||||| ||| |||||| ||||| |||| | |||||||| | | |||||| || AAAAGCTTGA TGACTCTGAG TTTCGAAATG CCTTTTCTCG TGCGACAATT CGA....... 563 GTGATTATAA CTCAAATGAT ATGATTGCAG GATGCTTAGT GCCTTTTCTT TTGTTAGCCT 4815 .......... .......... .......... .......... .......... .......... 563 ATACCATTGT CTTATGCTTC ATAAAAATAT TGCTTTGTCT TATGTAGGTG AAGGAACATG 4755 || || ||| ||| .......... .......... .......... .......... .......GTT AAAGAATATG 576 A 4754 | A 577 hqPGS_C06HBa0024L21.1-4-_SGN-E271755+ (8414 8324,8236 8171,8073 7999,7620 7494,7412 7366,7258 7201,5100 5051,4938 4882,4767 4754) ******************************************************************************** EST sequence 35 +strand 614 n (File: SGN-E341527+) 1 CAGGAACAAT GAGTCGGTCG AGTAGGACAC TTTATGTTGG CAATCTTCCT GGTGATGTTC 61 GTGAGCGTGA AGTGGAAGAT CTCTTTTACA AGTATGGACC GATTGCACAT ATTGAGCTGA 121 AAATTCCACC AAGACCCCCT GGTTATGCTT TTGTTGAGTT TGAAGAGGCT CGTGATGCTG 181 AAGATGCTAT TCGTGGTCGT GATGGCTATG ATTTTGATGG GCACCGTCTG CGGGTTGAGC 241 TTGCACATGG CGGGCGTGGT AACTCATCAT CAAATGATCG TTATGGTGGT GGCGGTGGCG 301 GCCGTGGTCA GCGTGGTGGA GGAGTGTCAA GACGTTCAGA TTATCGAGTG TTAGTTACAG 361 GATTACCCCA TTCAGCATCG TGGCAGGATC TCAAGGATCA CATGCGCCGT GCTGGGGATG 421 TTTGTTTCTC CCAAGTTTTC CGTGACGGGA GTGGAACCAC TGGTATAATT GATTATACAA 481 ACTATGATGA CATGAAATAT GCTATCAAAA AGCTTGATGA CTCTGAGTTT CGAAATGCCT 541 TTTCTCGTGC GACAATTCGA GTTAAAGAAT ATGACCGCAG TCGAAGTCGC AGCCGCAGTC 601 GCAGTCGCTC TTAC Predicted gene structure (within gDNA segment 9883 to 3516): Exon 1 8414 8324 ( 91 n); cDNA 2 92 ( 91 n); score: 0.890 Intron 1 8323 8237 ( 87 n); Pd: 1.000 (s: 0.90), Pa: 0.999 (s: 0.92) Exon 2 8236 8171 ( 66 n); cDNA 93 158 ( 66 n); score: 0.939 Intron 2 8170 8074 ( 97 n); Pd: 0.999 (s: 0.96), Pa: 0.998 (s: 0.90) Exon 3 8073 7999 ( 75 n); cDNA 159 233 ( 75 n); score: 0.880 Intron 3 7998 7621 ( 378 n); Pd: 0.996 (s: 0.88), Pa: 0.996 (s: 0.82) Exon 4 7620 7494 ( 127 n); cDNA 234 348 ( 115 n); score: 0.661 Intron 4 7493 7413 ( 81 n); Pd: 0.994 (s: 0.58), Pa: 0.994 (s: 0.91) Exon 5 7412 7366 ( 47 n); cDNA 349 395 ( 47 n); score: 0.915 Intron 5 7365 7259 ( 107 n); Pd: 0.700 (s: 0.91), Pa: 0.998 (s: 0.92) Exon 6 7258 7201 ( 58 n); cDNA 396 453 ( 58 n); score: 0.914 Intron 6 7200 5101 (2100 n); Pd: 0.922 (s: 0.92), Pa: 0.926 (s: 0.86) Exon 7 5100 5051 ( 50 n); cDNA 454 503 ( 50 n); score: 0.860 Intron 7 5050 4939 ( 112 n); Pd: 0.999 (s: 0.86), Pa: 0.959 (s: 0.86) Exon 8 4938 4882 ( 57 n); cDNA 504 560 ( 57 n); score: 0.860 Intron 8 4881 4768 ( 114 n); Pd: 0.871 (s: 0.86), Pa: 0.999 (s: 0) Exon 9 4767 4755 ( 13 n); cDNA 561 573 ( 13 n); score: 0.769 MATCH C06HBa0024L21.1-4- SGN-E341527+ 0.836 584 0.951 C PGS_C06HBa0024L21.1-4-_SGN-E341527+ (8414 8324,8236 8171,8073 7999,7620 7494,7412 7366,7258 7201,5100 5051,4938 4882,4767 4755) Alignment (genomic DNA sequence = upper lines): AGGAACAATG AGTCGTTCAA GTAGGACGAT TTATGTTGGT AATCTTCCTG GTGATATTCG 8355 |||||||||| ||||| || | ||||||| | ||||||||| |||||||||| ||||| |||| AGGAACAATG AGTCGGTCGA GTAGGACACT TTATGTTGGC AATCTTCCTG GTGATGTTCG 61 TGAGCGAGAA GTGGAGGATC TGTTCTACAA GGTACTTGTA TAACACTTAG CTTCATACTT 8295 |||||| ||| ||||| |||| | || ||||| | TGAGCGTGAA GTGGAAGATC TCTTTTACAA G......... .......... .......... 92 TAGTTGGATG TCATTTACTA TGCTCATAAA CTTAAATGTG TGTGGCGTAT AATTGTAGTA 8235 || .......... .......... .......... .......... .......... ........TA 94 TGGCCCGATA GCACATATTG ATCTGAAAAT TCCACCAAGA CCCCCAGGTT ATGCTTTTGT 8175 ||| ||||| |||||||||| | |||||||| |||||||||| ||||| |||| |||||||||| TGGACCGATT GCACATATTG AGCTGAAAAT TCCACCAAGA CCCCCTGGTT ATGCTTTTGT 154 TGAGGTAAGT TTTGACTGCA TTGGCTAAAA TGAATTTCAT TGGATATTTC CTTCTCAATT 8115 |||| TGAG...... .......... .......... .......... .......... .......... 158 GTTAACCTAT TTTGACATTG TTTTGTTGGA ACTAAACACA GTTTGAAGAG GCACGCGATG 8055 ||||||||| || || |||| .......... .......... .......... .......... .TTTGAAGAG GCTCGTGATG 177 CTGAGGATGC TATTCGTGGG CGCGATGGCT ATGAATTTGA TGGGCATCGT TTGAGGGTTA 7995 |||| ||||| ||||||||| || ||||||| |||| ||||| |||||| ||| || || CTGAAGATGC TATTCGTGGT CGTGATGGCT ATGATTTTGA TGGGCACCGT CTGCGG.... 233 GTAAAATCTT AACAGCATAT AGGATACACA CACATGAATC AATTGTATCC TCTGTTTACT 7935 .......... .......... .......... .......... .......... .......... 233 CTGAGAAGTA TGATTGACTT GCATTTTTGA ATCAGGGTTT CCAATTCTTG TATTAATTGC 7875 .......... .......... .......... .......... .......... .......... 233 ATTTCGTTGA CCCTAGCATT TCACCTAAAC CATTATGTTT CTTTATTAAA TGCTTGTCCC 7815 .......... .......... .......... .......... .......... .......... 233 AAATTAGTTG GGATCAGTTT TATAAATTGT CTGTAACCAT CCTACTTTAT CCAGGCGTAT 7755 .......... .......... .......... .......... .......... .......... 233 TTTTCTTTTC AAGCTTAGTT TGTCTTTCAA GGCAAATTAA CATGTCTAAT ACATATAAGA 7695 .......... .......... .......... .......... .......... .......... 233 CACCTAAATG CTAAATAGTT TTCTTTTTGA GGTGCTTAAG ATCTAAGCCT ACTGAAACTG 7635 .......... .......... .......... .......... .......... .......... 233 TTACATGTAT GCAGGTTGAG CTTGCACATG GTGGGCGTGG TAACTCATCG TCAGATCGTT 7575 |||||| |||||||||| | |||||||| ||||||||| ||| | .......... ....GTTGAG CTTGCACATG GCGGGCGTGG TAACTCATCA TCA-A----- 273 ATAATAGTGG CAATAATAGT GGCCATAATG GTGGTCGTAA TAATCACAAA TTTGGAGCGC 7515 || || || || | || || | || | || ||| | | | |||| | ATGATCGT-- -TATGGTGGT GG-C--GGTG GCGGCCGTGG TCAGCGTGGT GGAGGAGTGT 327 CCAAACGTAC CGAGTATCGA GGCACGTATG TTATTAATGT GCACATAATT TTCTTTATTG 7455 | | |||| | || |||||| | CAAGACGTTC AGATTATCGA G......... .......... .......... .......... 348 CATTTCATGC CTTCTTGATC TAATTCACTT ACTCATTTTC AGTTTTAGTT ACCGGATTGC 7395 | |||||| || ||||| | .......... .......... .......... .......... ..TGTTAGTT ACAGGATTAC 366 CCCATTCAGC ATCCTGGCAG GATCTCAAGG TGAGTGGTGT CTGTGTGGTA AATTATAAGG 7335 |||||||||| ||| |||||| ||||||||| CCCATTCAGC ATCGTGGCAG GATCTCAAG. .......... .......... .......... 395 ACCGTGGCTA AAAGTGATCT TCCTTTTCTG GTATCTTCTA GCTTCTGAAT ATTGGTATTC 7275 .......... .......... .......... .......... .......... .......... 395 TATGTTTCTT ATGTAGGATC ATATGCGTCG AGCTGGGGAT GTTTGTTTCT CACAAGTTTT 7215 |||| | ||||| || ||||||||| |||||||||| | |||||||| .......... ......GATC ACATGCGCCG TGCTGGGGAT GTTTGTTTCT CCCAAGTTTT 439 CCGTGAGGGG AGTGGTAAGA TAATTTGCAA CAGATACTAG TTTTATGCTC CTCTTAATTG 7155 |||||| ||| |||| CCGTGACGGG AGTG...... .......... .......... .......... .......... 453 TCCCTTTGTT TTGTTTGTAT AAGGGTTTGT TTTTACTATG CCAAAGGAAC TTGCCTATAT 7095 .......... .......... .......... .......... .......... .......... 453 CAGGACCTAT ATTGGTAAAT TTGGTAAATT AAGAGTCAAG TCTCTATAAC TACCCTTTCT 7035 .......... .......... .......... .......... .......... .......... 453 CTTTTTTTCC TTTTCCGTCT TTCTGTTGGG TTTTCTTCTT TGAGAAGTGG TTGGAGAAGG 6975 .......... .......... .......... .......... .......... .......... 453 ATGGATATTT GATCCTTTTT TTTGAGAATA GCAATATATT TTCTGTGGAT AACTTGAATT 6915 .......... .......... .......... .......... .......... .......... 453 TCAATTGTTT TTATGGCTCT TTAACTTACT ACCTTGAGCT GACTATCTTT CATAATGCAA 6855 .......... .......... .......... .......... .......... .......... 453 CTAGAAAGGC TTTCTCAAAG TAGAATCATT TCTTAAATCT TGTGTTGAAT GTGACTGTGG 6795 .......... .......... .......... .......... .......... .......... 453 TTCATCATTG GGTCTGCAAG TGTCTTTCCC AACCATATAA CAGCTAATAT TATCTTTCAG 6735 .......... .......... .......... .......... .......... .......... 453 ACCCAATCAA AACCAAATCT TGTTCTATGG CCCGTGAATA GATGATATTT TTGGGCTATT 6675 .......... .......... .......... .......... .......... .......... 453 GTTGAGAACA AAATTGCTGT ACGCTGCAGT AACGTGCATT AGTTATATAT TTGATGACTT 6615 .......... .......... .......... .......... .......... .......... 453 CTGGCTTAGT TTATAGTTTA TAGTTTATAC TATAATGTTT AGCCAACTTG GCTGGATAAA 6555 .......... .......... .......... .......... .......... .......... 453 GTGACTGCGT CACTCAGTTT GGATGGGATA ATGGGTGCTA TTACCAATCT TGGTAAAATG 6495 .......... .......... .......... .......... .......... .......... 453 GTCAGGTTTG ATATATTATA TATCCTTTGA CTGAAGTTTG TCATTGTACA TCATCATTCA 6435 .......... .......... .......... .......... .......... .......... 453 AAACATAGTT CCATCCGTTT TAGTCAGAAA ACTATTTTTC TCTTCTGGTG CCATAGTAAT 6375 .......... .......... .......... .......... .......... .......... 453 ATAATAGAAC AAGAAAGAAT TACAGAAAGT TAAAAAGTAT TAACATAAAA AAAAAGTAGA 6315 .......... .......... .......... .......... .......... .......... 453 TGAAAAATTT GTTGGGGTAA CGCATAAAGT AAAAAAAATA GCAGGGAAAA ATAAAATGGA 6255 .......... .......... .......... .......... .......... .......... 453 GCAGAAAAAG AGAAAGGAGG GAAGTCTAAA AGAAATCCTT GGTTTGGGGT TGAGGAAAGA 6195 .......... .......... .......... .......... .......... .......... 453 CGGTAATGTT TCAACCCAGG TGTTGTAGAA GAGTAGATTA ATTATTTTTT GGGGCATTTG 6135 .......... .......... .......... .......... .......... .......... 453 TTGGAGAGGT AAGTGGGAGC TCTGTTGGAC GATGAGGAGA AGATAGCAGG AAATAAGTGA 6075 .......... .......... .......... .......... .......... .......... 453 GCTTATTTTT TCATCTTCCA TGTTGAATAA CATCCTGTGC TTACCTGTGT ATTCCTCACT 6015 .......... .......... .......... .......... .......... .......... 453 CTTTGAATAA ATGTTGATGT GTGTCTGGAT GTAATGCCTG GATTATGTCC CGCCTGGTGA 5955 .......... .......... .......... .......... .......... .......... 453 TAGTGGTCCT CCATAACAAG ATAGTACTGC TATCTGGCTT ATTGCATGTT ACCAACCTTG 5895 .......... .......... .......... .......... .......... .......... 453 AACAAGCCAA GATAATGAAG AGGCTAATCT AATAAGTGGG CTTAACAATG GATACACCAA 5835 .......... .......... .......... .......... .......... .......... 453 GAATAGGAGT GGGTCTGGCT CTAATATCAT ACCATGTTAA GTGGAAAATT TGGGCCCAAC 5775 .......... .......... .......... .......... .......... .......... 453 TCAACTCCAA AAGGTACCTT AGTGCCAGAT CATGCAATAA GATCTCTTTT TCCCTCTTTC 5715 .......... .......... .......... .......... .......... .......... 453 CTTCATGTTT CAGATCATGC TAACTCAACT CCAAAAGGTA GCTTAGTGCA AGATCATGCA 5655 .......... .......... .......... .......... .......... .......... 453 ATAAGATCTC TTTTTACCTC TTTCCTTTAA TGTTTCAGAT TATGCAATAA GATAACTTTC 5595 .......... .......... .......... .......... .......... .......... 453 CTTCTTTCCT TTAATTGTTT CAGTTAGCTT GCTATTAGGT TTTACATAGA AAATTGTCAT 5535 .......... .......... .......... .......... .......... .......... 453 CATTTTTGTC AGGACAAATA TACTAGAGCC TTTATAATTA AGACAGTTAA TAGACAGATG 5475 .......... .......... .......... .......... .......... .......... 453 GCAAAGATGG TTCGACTCTA AAATAGGAAT TTAATAGTTG ATTTTACCCT ATATAAATGG 5415 .......... .......... .......... .......... .......... .......... 453 AATTGAAAAT AGTGATTGCC ACTCAAAATC TAGGGTCAGC TGAGATTTAT TGGATATTTC 5355 .......... .......... .......... .......... .......... .......... 453 AATTTTGTGG TTGTGACTAA AATGGCCCGA ATGTATGGCT GAGCAGTTTA AAGACCTGTG 5295 .......... .......... .......... .......... .......... .......... 453 GAAATAATGT GCTTCAGATT TTTTTTATTC TGTAATCAAA TGTGGTGCTG CCTTATCTTT 5235 .......... .......... .......... .......... .......... .......... 453 GAAATAATTT CTTGTGCTTC TACTCAATTT TTGTTGTGGC AAGCACCCTA CTCTTGCTAT 5175 .......... .......... .......... .......... .......... .......... 453 GACTTGTGAA TTTACTCTCC TTAAGTGATT CTTTTGTGGT GGATGGTGCG CTAACAATCA 5115 .......... .......... .......... .......... .......... .......... 453 GTTTTGCTCT TCAGGGACCA CTGGGATTGT GGATTATACC AACTATGACG ACATGAAATA 5055 | |||| |||| || | |||||||| |||||||| | |||||||||| .......... ....GAACCA CTGGTATAAT TGATTATACA AACTATGATG ACATGAAATA 499 TGCTGTAAGC TATCTCCTGT TTCTTATTCT GTATAATTAT CCTCAATTTT TGTTCAAGAT 4995 |||| TGCT...... .......... .......... .......... .......... .......... 503 ATTTGAAATA TGTTTATGCT CGACTAACGA GTGTAATTAA TTTTCCTTGT ATGTAGATAA 4935 || | .......... .......... .......... .......... .......... ......ATCA 507 AAAAACTTGA TGAATCTGAG TTTCGGAATG CTTTTTCTCG TTCAACAATT CGGGTATGAT 4875 |||| ||||| ||| |||||| ||||| |||| | |||||||| | | |||||| || AAAAGCTTGA TGACTCTGAG TTTCGAAATG CCTTTTCTCG TGCGACAATT CGA....... 560 GTGATTATAA CTCAAATGAT ATGATTGCAG GATGCTTAGT GCCTTTTCTT TTGTTAGCCT 4815 .......... .......... .......... .......... .......... .......... 560 ATACCATTGT CTTATGCTTC ATAAAAATAT TGCTTTGTCT TATGTAGGTG AAGGAACATG 4755 || || ||| ||| .......... .......... .......... .......... .......GTT AAAGAATATG 573 hqPGS_C06HBa0024L21.1-4-_SGN-E341527+ (8414 8324,8236 8171,8073 7999,7620 7494,7412 7366,7258 7201,5100 5051,4938 4882,4767 4755) ******************************************************************************** EST sequence 41 +strand 495 n (File: SGN-E256458+) 1 AAAATTCCAC CAAGACCCCC TGGTTATGCT TTTGTTGAGT TTGAAGAGGC TCGTGATGCT 61 GAAGATGCTA TTCGTGGTCG TGATGGCTAT GATTTTGATG GGCACCGTCT GCGGGTTGAG 121 CTTGCACATG GCGGGCGTGG TAACTCATCA TCAAATGATC GTTATGGTGG TGGCGGTGGC 181 GGCCGTGGTC ACCGTGGTGG AGGAGTGTCA AGACGTTCAG ATTATCGAGT GTTAGTTACA 241 GGATTACCCC ATTCAGCATC GTGGCAGGAT CTCAAGGATC ACATGCGCCG TGCTGGGGAT 301 GTTTGTTTCT CCCAAGTTTT CCGTGACGGG AGTGGAACCA CTGGTATAAT TGATTATACA 361 AACTATGATG ACATGAAATA TGCTATCAAA AAGCTTGATG ACTCTGAGTT TCGAAATGCC 421 TTTTCTCGTG CGACAATTCG AGTTAAAGAA TATGACCGCA GTCGAAGTCG CAGCCGCAGT 481 CGCAGTCGCT CTTAC Predicted gene structure (within gDNA segment 8809 to 3516): Exon 1 8209 8171 ( 39 n); cDNA 1 39 ( 39 n); score: 0.974 Intron 1 8170 8074 ( 97 n); Pd: 0.999 (s: 0), Pa: 0.998 (s: 0.90) Exon 2 8073 7999 ( 75 n); cDNA 40 114 ( 75 n); score: 0.880 Intron 2 7998 7621 ( 378 n); Pd: 0.996 (s: 0.88), Pa: 0.996 (s: 0.82) Exon 3 7620 7494 ( 127 n); cDNA 115 229 ( 115 n); score: 0.661 Intron 3 7493 7413 ( 81 n); Pd: 0.994 (s: 0.58), Pa: 0.994 (s: 0.91) Exon 4 7412 7366 ( 47 n); cDNA 230 276 ( 47 n); score: 0.915 Intron 4 7365 7259 ( 107 n); Pd: 0.700 (s: 0.91), Pa: 0.998 (s: 0.92) Exon 5 7258 7201 ( 58 n); cDNA 277 334 ( 58 n); score: 0.914 Intron 5 7200 5101 (2100 n); Pd: 0.922 (s: 0.92), Pa: 0.926 (s: 0.86) Exon 6 5100 5051 ( 50 n); cDNA 335 384 ( 50 n); score: 0.860 Intron 6 5050 4939 ( 112 n); Pd: 0.999 (s: 0.86), Pa: 0.959 (s: 0.86) Exon 7 4938 4882 ( 57 n); cDNA 385 441 ( 57 n); score: 0.860 Intron 7 4881 4768 ( 114 n); Pd: 0.871 (s: 0.86), Pa: 0.999 (s: 0) Exon 8 4767 4755 ( 13 n); cDNA 442 454 ( 13 n); score: 0.769 MATCH C06HBa0024L21.1-4- SGN-E256458+ 0.804 466 0.941 C PGS_C06HBa0024L21.1-4-_SGN-E256458+ (8209 8171,8073 7999,7620 7494,7412 7366,7258 7201,5100 5051,4938 4882,4767 4755) Alignment (genomic DNA sequence = upper lines): AAAATTCCAC CAAGACCCCC AGGTTATGCT TTTGTTGAGG TAAGTTTTGA CTGCATTGGC 8150 |||||||||| |||||||||| ||||||||| ||||||||| AAAATTCCAC CAAGACCCCC TGGTTATGCT TTTGTTGAG. .......... .......... 39 TAAAATGAAT TTCATTGGAT ATTTCCTTCT CAATTGTTAA CCTATTTTGA CATTGTTTTG 8090 .......... .......... .......... .......... .......... .......... 39 TTGGAACTAA ACACAGTTTG AAGAGGCACG CGATGCTGAG GATGCTATTC GTGGGCGCGA 8030 |||| ||||||| || |||||||| |||||||||| |||| || || .......... ......TTTG AAGAGGCTCG TGATGCTGAA GATGCTATTC GTGGTCGTGA 83 TGGCTATGAA TTTGATGGGC ATCGTTTGAG GGTTAGTAAA ATCTTAACAG CATATAGGAT 7970 ||||||||| |||||||||| | ||| || | | TGGCTATGAT TTTGATGGGC ACCGTCTGCG G......... .......... .......... 114 ACACACACAT GAATCAATTG TATCCTCTGT TTACTCTGAG AAGTATGATT GACTTGCATT 7910 .......... .......... .......... .......... .......... .......... 114 TTTGAATCAG GGTTTCCAAT TCTTGTATTA ATTGCATTTC GTTGACCCTA GCATTTCACC 7850 .......... .......... .......... .......... .......... .......... 114 TAAACCATTA TGTTTCTTTA TTAAATGCTT GTCCCAAATT AGTTGGGATC AGTTTTATAA 7790 .......... .......... .......... .......... .......... .......... 114 ATTGTCTGTA ACCATCCTAC TTTATCCAGG CGTATTTTTC TTTTCAAGCT TAGTTTGTCT 7730 .......... .......... .......... .......... .......... .......... 114 TTCAAGGCAA ATTAACATGT CTAATACATA TAAGACACCT AAATGCTAAA TAGTTTTCTT 7670 .......... .......... .......... .......... .......... .......... 114 TTTGAGGTGC TTAAGATCTA AGCCTACTGA AACTGTTACA TGTATGCAGG TTGAGCTTGC 7610 | |||||||||| .......... .......... .......... .......... .........G TTGAGCTTGC 125 ACATGGTGGG CGTGGTAACT CATCGTCAGA TCGTTATAAT AGTGGCAATA ATAGTGGCCA 7550 |||||| ||| |||||||||| |||| ||| | || || || || | |||| | ACATGGCGGG CGTGGTAACT CATCATCA-A -----ATGAT CGT---TATG GTGGTGG-C- 174 TAATGGTGGT CGTAATAATC ACAAATTTGG AGCGCCCAAA CGTACCGAGT ATCGAGGCAC 7490 ||| || ||| | | | || || | | | | ||| | || | |||||| -GGTGGCGGC CGTGGTCACC GTGGTGGAGG AGTGTCAAGA CGTTCAGATT ATCGAG.... 229 GTATGTTATT AATGTGCACA TAATTTTCTT TATTGCATTT CATGCCTTCT TGATCTAATT 7430 .......... .......... .......... .......... .......... .......... 229 CACTTACTCA TTTTCAGTTT TAGTTACCGG ATTGCCCCAT TCAGCATCCT GGCAGGATCT 7370 | | ||||||| || ||| |||||| |||||||| | |||||||||| .......... .......TGT TAGTTACAGG ATTACCCCAT TCAGCATCGT GGCAGGATCT 272 CAAGGTGAGT GGTGTCTGTG TGGTAAATTA TAAGGACCGT GGCTAAAAGT GATCTTCCTT 7310 |||| CAAG...... .......... .......... .......... .......... .......... 276 TTCTGGTATC TTCTAGCTTC TGAATATTGG TATTCTATGT TTCTTATGTA GGATCATATG 7250 ||||| ||| .......... .......... .......... .......... .......... .GATCACATG 285 CGTCGAGCTG GGGATGTTTG TTTCTCACAA GTTTTCCGTG AGGGGAGTGG TAAGATAATT 7190 || || |||| |||||||||| |||||| ||| |||||||||| | ||||||| CGCCGTGCTG GGGATGTTTG TTTCTCCCAA GTTTTCCGTG ACGGGAGTG. .......... 334 TGCAACAGAT ACTAGTTTTA TGCTCCTCTT AATTGTCCCT TTGTTTTGTT TGTATAAGGG 7130 .......... .......... .......... .......... .......... .......... 334 TTTGTTTTTA CTATGCCAAA GGAACTTGCC TATATCAGGA CCTATATTGG TAAATTTGGT 7070 .......... .......... .......... .......... .......... .......... 334 AAATTAAGAG TCAAGTCTCT ATAACTACCC TTTCTCTTTT TTTCCTTTTC CGTCTTTCTG 7010 .......... .......... .......... .......... .......... .......... 334 TTGGGTTTTC TTCTTTGAGA AGTGGTTGGA GAAGGATGGA TATTTGATCC TTTTTTTTGA 6950 .......... .......... .......... .......... .......... .......... 334 GAATAGCAAT ATATTTTCTG TGGATAACTT GAATTTCAAT TGTTTTTATG GCTCTTTAAC 6890 .......... .......... .......... .......... .......... .......... 334 TTACTACCTT GAGCTGACTA TCTTTCATAA TGCAACTAGA AAGGCTTTCT CAAAGTAGAA 6830 .......... .......... .......... .......... .......... .......... 334 TCATTTCTTA AATCTTGTGT TGAATGTGAC TGTGGTTCAT CATTGGGTCT GCAAGTGTCT 6770 .......... .......... .......... .......... .......... .......... 334 TTCCCAACCA TATAACAGCT AATATTATCT TTCAGACCCA ATCAAAACCA AATCTTGTTC 6710 .......... .......... .......... .......... .......... .......... 334 TATGGCCCGT GAATAGATGA TATTTTTGGG CTATTGTTGA GAACAAAATT GCTGTACGCT 6650 .......... .......... .......... .......... .......... .......... 334 GCAGTAACGT GCATTAGTTA TATATTTGAT GACTTCTGGC TTAGTTTATA GTTTATAGTT 6590 .......... .......... .......... .......... .......... .......... 334 TATACTATAA TGTTTAGCCA ACTTGGCTGG ATAAAGTGAC TGCGTCACTC AGTTTGGATG 6530 .......... .......... .......... .......... .......... .......... 334 GGATAATGGG TGCTATTACC AATCTTGGTA AAATGGTCAG GTTTGATATA TTATATATCC 6470 .......... .......... .......... .......... .......... .......... 334 TTTGACTGAA GTTTGTCATT GTACATCATC ATTCAAAACA TAGTTCCATC CGTTTTAGTC 6410 .......... .......... .......... .......... .......... .......... 334 AGAAAACTAT TTTTCTCTTC TGGTGCCATA GTAATATAAT AGAACAAGAA AGAATTACAG 6350 .......... .......... .......... .......... .......... .......... 334 AAAGTTAAAA AGTATTAACA TAAAAAAAAA GTAGATGAAA AATTTGTTGG GGTAACGCAT 6290 .......... .......... .......... .......... .......... .......... 334 AAAGTAAAAA AAATAGCAGG GAAAAATAAA ATGGAGCAGA AAAAGAGAAA GGAGGGAAGT 6230 .......... .......... .......... .......... .......... .......... 334 CTAAAAGAAA TCCTTGGTTT GGGGTTGAGG AAAGACGGTA ATGTTTCAAC CCAGGTGTTG 6170 .......... .......... .......... .......... .......... .......... 334 TAGAAGAGTA GATTAATTAT TTTTTGGGGC ATTTGTTGGA GAGGTAAGTG GGAGCTCTGT 6110 .......... .......... .......... .......... .......... .......... 334 TGGACGATGA GGAGAAGATA GCAGGAAATA AGTGAGCTTA TTTTTTCATC TTCCATGTTG 6050 .......... .......... .......... .......... .......... .......... 334 AATAACATCC TGTGCTTACC TGTGTATTCC TCACTCTTTG AATAAATGTT GATGTGTGTC 5990 .......... .......... .......... .......... .......... .......... 334 TGGATGTAAT GCCTGGATTA TGTCCCGCCT GGTGATAGTG GTCCTCCATA ACAAGATAGT 5930 .......... .......... .......... .......... .......... .......... 334 ACTGCTATCT GGCTTATTGC ATGTTACCAA CCTTGAACAA GCCAAGATAA TGAAGAGGCT 5870 .......... .......... .......... .......... .......... .......... 334 AATCTAATAA GTGGGCTTAA CAATGGATAC ACCAAGAATA GGAGTGGGTC TGGCTCTAAT 5810 .......... .......... .......... .......... .......... .......... 334 ATCATACCAT GTTAAGTGGA AAATTTGGGC CCAACTCAAC TCCAAAAGGT ACCTTAGTGC 5750 .......... .......... .......... .......... .......... .......... 334 CAGATCATGC AATAAGATCT CTTTTTCCCT CTTTCCTTCA TGTTTCAGAT CATGCTAACT 5690 .......... .......... .......... .......... .......... .......... 334 CAACTCCAAA AGGTAGCTTA GTGCAAGATC ATGCAATAAG ATCTCTTTTT ACCTCTTTCC 5630 .......... .......... .......... .......... .......... .......... 334 TTTAATGTTT CAGATTATGC AATAAGATAA CTTTCCTTCT TTCCTTTAAT TGTTTCAGTT 5570 .......... .......... .......... .......... .......... .......... 334 AGCTTGCTAT TAGGTTTTAC ATAGAAAATT GTCATCATTT TTGTCAGGAC AAATATACTA 5510 .......... .......... .......... .......... .......... .......... 334 GAGCCTTTAT AATTAAGACA GTTAATAGAC AGATGGCAAA GATGGTTCGA CTCTAAAATA 5450 .......... .......... .......... .......... .......... .......... 334 GGAATTTAAT AGTTGATTTT ACCCTATATA AATGGAATTG AAAATAGTGA TTGCCACTCA 5390 .......... .......... .......... .......... .......... .......... 334 AAATCTAGGG TCAGCTGAGA TTTATTGGAT ATTTCAATTT TGTGGTTGTG ACTAAAATGG 5330 .......... .......... .......... .......... .......... .......... 334 CCCGAATGTA TGGCTGAGCA GTTTAAAGAC CTGTGGAAAT AATGTGCTTC AGATTTTTTT 5270 .......... .......... .......... .......... .......... .......... 334 TATTCTGTAA TCAAATGTGG TGCTGCCTTA TCTTTGAAAT AATTTCTTGT GCTTCTACTC 5210 .......... .......... .......... .......... .......... .......... 334 AATTTTTGTT GTGGCAAGCA CCCTACTCTT GCTATGACTT GTGAATTTAC TCTCCTTAAG 5150 .......... .......... .......... .......... .......... .......... 334 TGATTCTTTT GTGGTGGATG GTGCGCTAAC AATCAGTTTT GCTCTTCAGG GACCACTGGG 5090 | |||||||| .......... .......... .......... .......... .........G AACCACTGGT 345 ATTGTGGATT ATACCAACTA TGACGACATG AAATATGCTG TAAGCTATCT CCTGTTTCTT 5030 || | |||| |||| ||||| ||| |||||| ||||||||| ATAATTGATT ATACAAACTA TGATGACATG AAATATGCT. .......... .......... 384 ATTCTGTATA ATTATCCTCA ATTTTTGTTC AAGATATTTG AAATATGTTT ATGCTCGACT 4970 .......... .......... .......... .......... .......... .......... 384 AACGAGTGTA ATTAATTTTC CTTGTATGTA GATAAAAAAA CTTGATGAAT CTGAGTTTCG 4910 || ||||| |||||||| | |||||||||| .......... .......... .......... .ATCAAAAAG CTTGATGACT CTGAGTTTCG 413 GAATGCTTTT TCTCGTTCAA CAATTCGGGT ATGATGTGAT TATAACTCAA ATGATATGAT 4850 ||||| ||| |||||| | | ||||||| AAATGCCTTT TCTCGTGCGA CAATTCGA.. .......... .......... .......... 441 TGCAGGATGC TTAGTGCCTT TTCTTTTGTT AGCCTATACC ATTGTCTTAT GCTTCATAAA 4790 .......... .......... .......... .......... .......... .......... 441 AATATTGCTT TGTCTTATGT AGGTGAAGGA ACATG 4755 || || || | ||| .......... .......... ..GTTAAAGA ATATG 454 hqPGS_C06HBa0024L21.1-4-_SGN-E256458+ (8209 8171,8073 7999,7620 7494,7412 7366,7258 7201,5100 5051,4938 4882,4767 4755) ******************************************************************************** EST sequence 42 +strand 580 n (File: SGN-E288997+) 1 GAACAATGAG TCGGTCGAGT AGGACACTTT ATGTTGGCAA TCTTCCTGGT GATGTTCGTG 61 AGCGTGAAGT GGAAGATCTC TTTTACAAGT ATGGACCGAT TGCACATATT GAGCTGAAAA 121 TTCCACCAAG ACCCCCTGGT TATGCTTTTG TTGAGTTTGA AGAGGCTCGT GATGCTGAAG 181 ATGCTATTCG TGGTCGTGAT GGCTATGATT TTGATGGGCA CCGTCTGCGG GTTGAGCTTG 241 CACATGGCGG GCGTGGTAAC TCATCATCAA ATGATCGTTA TGGTGGTGGC GGTGGCGGCC 301 GTGGTCAGCG TGGTGGAGGA GTGTCAAGAC GTTCAGATTA TCGAGTGTTA GTTACAGGAT 361 TACCCCATTC AGCATCGTGG CAGGATCTCA AGGATCACAT GCGCCGTGCT GGGGATGTTT 421 GTTTCTCCCA AGTTTTCCGT GACGGGAGTG GAACCACTGG TATAATTGAT TATACAAACT 481 ATGATGACAT GAAATATGCT ATCAAAAAGC TTGATGACTC TGAGTTTCGA AATGCCTTTT 541 CTCGTGCGAC AATTCGAGTT AAAGAATATG ACCGCAGTCG Predicted gene structure (within gDNA segment 9883 to 3826): Exon 1 8412 8324 ( 89 n); cDNA 1 89 ( 89 n); score: 0.888 Intron 1 8323 8237 ( 87 n); Pd: 1.000 (s: 0.90), Pa: 0.999 (s: 0.92) Exon 2 8236 8171 ( 66 n); cDNA 90 155 ( 66 n); score: 0.939 Intron 2 8170 8074 ( 97 n); Pd: 0.999 (s: 0.96), Pa: 0.998 (s: 0.90) Exon 3 8073 7999 ( 75 n); cDNA 156 230 ( 75 n); score: 0.880 Intron 3 7998 7621 ( 378 n); Pd: 0.996 (s: 0.88), Pa: 0.996 (s: 0.82) Exon 4 7620 7494 ( 127 n); cDNA 231 345 ( 115 n); score: 0.661 Intron 4 7493 7413 ( 81 n); Pd: 0.994 (s: 0.58), Pa: 0.994 (s: 0.91) Exon 5 7412 7366 ( 47 n); cDNA 346 392 ( 47 n); score: 0.915 Intron 5 7365 7259 ( 107 n); Pd: 0.700 (s: 0.91), Pa: 0.998 (s: 0.92) Exon 6 7258 7201 ( 58 n); cDNA 393 450 ( 58 n); score: 0.914 Intron 6 7200 5101 (2100 n); Pd: 0.922 (s: 0.92), Pa: 0.926 (s: 0.86) Exon 7 5100 5051 ( 50 n); cDNA 451 500 ( 50 n); score: 0.860 Intron 7 5050 4939 ( 112 n); Pd: 0.999 (s: 0.86), Pa: 0.959 (s: 0.86) Exon 8 4938 4882 ( 57 n); cDNA 501 557 ( 57 n); score: 0.860 Intron 8 4881 4768 ( 114 n); Pd: 0.871 (s: 0.86), Pa: 0.999 (s: 0) Exon 9 4767 4748 ( 20 n); cDNA 558 577 ( 20 n); score: 0.650 MATCH C06HBa0024L21.1-4- SGN-E288997+ 0.835 589 1.016 C PGS_C06HBa0024L21.1-4-_SGN-E288997+ (8412 8324,8236 8171,8073 7999,7620 7494,7412 7366,7258 7201,5100 5051,4938 4882,4767 4748) Alignment (genomic DNA sequence = upper lines): GAACAATGAG TCGTTCAAGT AGGACGATTT ATGTTGGTAA TCTTCCTGGT GATATTCGTG 8353 |||||||||| ||| || ||| ||||| ||| ||||||| || |||||||||| ||| |||||| GAACAATGAG TCGGTCGAGT AGGACACTTT ATGTTGGCAA TCTTCCTGGT GATGTTCGTG 60 AGCGAGAAGT GGAGGATCTG TTCTACAAGG TACTTGTATA ACACTTAGCT TCATACTTTA 8293 |||| ||||| ||| ||||| || |||||| AGCGTGAAGT GGAAGATCTC TTTTACAAG. .......... .......... .......... 89 GTTGGATGTC ATTTACTATG CTCATAAACT TAAATGTGTG TGGCGTATAA TTGTAGTATG 8233 |||| .......... .......... .......... .......... .......... ......TATG 93 GCCCGATAGC ACATATTGAT CTGAAAATTC CACCAAGACC CCCAGGTTAT GCTTTTGTTG 8173 | ||||| || ||||||||| |||||||||| |||||||||| ||| |||||| |||||||||| GACCGATTGC ACATATTGAG CTGAAAATTC CACCAAGACC CCCTGGTTAT GCTTTTGTTG 153 AGGTAAGTTT TGACTGCATT GGCTAAAATG AATTTCATTG GATATTTCCT TCTCAATTGT 8113 || AG........ .......... .......... .......... .......... .......... 155 TAACCTATTT TGACATTGTT TTGTTGGAAC TAAACACAGT TTGAAGAGGC ACGCGATGCT 8053 | |||||||||| || |||||| .......... .......... .......... .........T TTGAAGAGGC TCGTGATGCT 176 GAGGATGCTA TTCGTGGGCG CGATGGCTAT GAATTTGATG GGCATCGTTT GAGGGTTAGT 7993 || ||||||| ||||||| || ||||||||| || ||||||| |||| ||| | | || GAAGATGCTA TTCGTGGTCG TGATGGCTAT GATTTTGATG GGCACCGTCT GCGG...... 230 AAAATCTTAA CAGCATATAG GATACACACA CATGAATCAA TTGTATCCTC TGTTTACTCT 7933 .......... .......... .......... .......... .......... .......... 230 GAGAAGTATG ATTGACTTGC ATTTTTGAAT CAGGGTTTCC AATTCTTGTA TTAATTGCAT 7873 .......... .......... .......... .......... .......... .......... 230 TTCGTTGACC CTAGCATTTC ACCTAAACCA TTATGTTTCT TTATTAAATG CTTGTCCCAA 7813 .......... .......... .......... .......... .......... .......... 230 ATTAGTTGGG ATCAGTTTTA TAAATTGTCT GTAACCATCC TACTTTATCC AGGCGTATTT 7753 .......... .......... .......... .......... .......... .......... 230 TTCTTTTCAA GCTTAGTTTG TCTTTCAAGG CAAATTAACA TGTCTAATAC ATATAAGACA 7693 .......... .......... .......... .......... .......... .......... 230 CCTAAATGCT AAATAGTTTT CTTTTTGAGG TGCTTAAGAT CTAAGCCTAC TGAAACTGTT 7633 .......... .......... .......... .......... .......... .......... 230 ACATGTATGC AGGTTGAGCT TGCACATGGT GGGCGTGGTA ACTCATCGTC AGATCGTTAT 7573 |||||||| ||||||||| |||||||||| ||||||| || | | || .......... ..GTTGAGCT TGCACATGGC GGGCGTGGTA ACTCATCATC A-A-----AT 272 AATAGTGGCA ATAATAGTGG CCATAATGGT GGTCGTAATA ATCACAAATT TGGAGCGCCC 7513 || || || | |||| | ||| || ||| | | | |||| | | GATCGT---T ATGGTGGTGG -C--GGTGGC GGCCGTGGTC AGCGTGGTGG AGGAGTGTCA 326 AAACGTACCG AGTATCGAGG CACGTATGTT ATTAATGTGC ACATAATTTT CTTTATTGCA 7453 | |||| | | | ||||||| AGACGTTCAG ATTATCGAG. .......... .......... .......... .......... 345 TTTCATGCCT TCTTGATCTA ATTCACTTAC TCATTTTCAG TTTTAGTTAC CGGATTGCCC 7393 | |||||||| ||||| ||| .......... .......... .......... .......... TGTTAGTTAC AGGATTACCC 365 CATTCAGCAT CCTGGCAGGA TCTCAAGGTG AGTGGTGTCT GTGTGGTAAA TTATAAGGAC 7333 |||||||||| | |||||||| ||||||| CATTCAGCAT CGTGGCAGGA TCTCAAG... .......... .......... .......... 392 CGTGGCTAAA AGTGATCTTC CTTTTCTGGT ATCTTCTAGC TTCTGAATAT TGGTATTCTA 7273 .......... .......... .......... .......... .......... .......... 392 TGTTTCTTAT GTAGGATCAT ATGCGTCGAG CTGGGGATGT TTGTTTCTCA CAAGTTTTCC 7213 ||||| ||||| || | |||||||||| ||||||||| |||||||||| .......... ....GATCAC ATGCGCCGTG CTGGGGATGT TTGTTTCTCC CAAGTTTTCC 438 GTGAGGGGAG TGGTAAGATA ATTTGCAACA GATACTAGTT TTATGCTCCT CTTAATTGTC 7153 |||| ||||| || GTGACGGGAG TG........ .......... .......... .......... .......... 450 CCTTTGTTTT GTTTGTATAA GGGTTTGTTT TTACTATGCC AAAGGAACTT GCCTATATCA 7093 .......... .......... .......... .......... .......... .......... 450 GGACCTATAT TGGTAAATTT GGTAAATTAA GAGTCAAGTC TCTATAACTA CCCTTTCTCT 7033 .......... .......... .......... .......... .......... .......... 450 TTTTTTCCTT TTCCGTCTTT CTGTTGGGTT TTCTTCTTTG AGAAGTGGTT GGAGAAGGAT 6973 .......... .......... .......... .......... .......... .......... 450 GGATATTTGA TCCTTTTTTT TGAGAATAGC AATATATTTT CTGTGGATAA CTTGAATTTC 6913 .......... .......... .......... .......... .......... .......... 450 AATTGTTTTT ATGGCTCTTT AACTTACTAC CTTGAGCTGA CTATCTTTCA TAATGCAACT 6853 .......... .......... .......... .......... .......... .......... 450 AGAAAGGCTT TCTCAAAGTA GAATCATTTC TTAAATCTTG TGTTGAATGT GACTGTGGTT 6793 .......... .......... .......... .......... .......... .......... 450 CATCATTGGG TCTGCAAGTG TCTTTCCCAA CCATATAACA GCTAATATTA TCTTTCAGAC 6733 .......... .......... .......... .......... .......... .......... 450 CCAATCAAAA CCAAATCTTG TTCTATGGCC CGTGAATAGA TGATATTTTT GGGCTATTGT 6673 .......... .......... .......... .......... .......... .......... 450 TGAGAACAAA ATTGCTGTAC GCTGCAGTAA CGTGCATTAG TTATATATTT GATGACTTCT 6613 .......... .......... .......... .......... .......... .......... 450 GGCTTAGTTT ATAGTTTATA GTTTATACTA TAATGTTTAG CCAACTTGGC TGGATAAAGT 6553 .......... .......... .......... .......... .......... .......... 450 GACTGCGTCA CTCAGTTTGG ATGGGATAAT GGGTGCTATT ACCAATCTTG GTAAAATGGT 6493 .......... .......... .......... .......... .......... .......... 450 CAGGTTTGAT ATATTATATA TCCTTTGACT GAAGTTTGTC ATTGTACATC ATCATTCAAA 6433 .......... .......... .......... .......... .......... .......... 450 ACATAGTTCC ATCCGTTTTA GTCAGAAAAC TATTTTTCTC TTCTGGTGCC ATAGTAATAT 6373 .......... .......... .......... .......... .......... .......... 450 AATAGAACAA GAAAGAATTA CAGAAAGTTA AAAAGTATTA ACATAAAAAA AAAGTAGATG 6313 .......... .......... .......... .......... .......... .......... 450 AAAAATTTGT TGGGGTAACG CATAAAGTAA AAAAAATAGC AGGGAAAAAT AAAATGGAGC 6253 .......... .......... .......... .......... .......... .......... 450 AGAAAAAGAG AAAGGAGGGA AGTCTAAAAG AAATCCTTGG TTTGGGGTTG AGGAAAGACG 6193 .......... .......... .......... .......... .......... .......... 450 GTAATGTTTC AACCCAGGTG TTGTAGAAGA GTAGATTAAT TATTTTTTGG GGCATTTGTT 6133 .......... .......... .......... .......... .......... .......... 450 GGAGAGGTAA GTGGGAGCTC TGTTGGACGA TGAGGAGAAG ATAGCAGGAA ATAAGTGAGC 6073 .......... .......... .......... .......... .......... .......... 450 TTATTTTTTC ATCTTCCATG TTGAATAACA TCCTGTGCTT ACCTGTGTAT TCCTCACTCT 6013 .......... .......... .......... .......... .......... .......... 450 TTGAATAAAT GTTGATGTGT GTCTGGATGT AATGCCTGGA TTATGTCCCG CCTGGTGATA 5953 .......... .......... .......... .......... .......... .......... 450 GTGGTCCTCC ATAACAAGAT AGTACTGCTA TCTGGCTTAT TGCATGTTAC CAACCTTGAA 5893 .......... .......... .......... .......... .......... .......... 450 CAAGCCAAGA TAATGAAGAG GCTAATCTAA TAAGTGGGCT TAACAATGGA TACACCAAGA 5833 .......... .......... .......... .......... .......... .......... 450 ATAGGAGTGG GTCTGGCTCT AATATCATAC CATGTTAAGT GGAAAATTTG GGCCCAACTC 5773 .......... .......... .......... .......... .......... .......... 450 AACTCCAAAA GGTACCTTAG TGCCAGATCA TGCAATAAGA TCTCTTTTTC CCTCTTTCCT 5713 .......... .......... .......... .......... .......... .......... 450 TCATGTTTCA GATCATGCTA ACTCAACTCC AAAAGGTAGC TTAGTGCAAG ATCATGCAAT 5653 .......... .......... .......... .......... .......... .......... 450 AAGATCTCTT TTTACCTCTT TCCTTTAATG TTTCAGATTA TGCAATAAGA TAACTTTCCT 5593 .......... .......... .......... .......... .......... .......... 450 TCTTTCCTTT AATTGTTTCA GTTAGCTTGC TATTAGGTTT TACATAGAAA ATTGTCATCA 5533 .......... .......... .......... .......... .......... .......... 450 TTTTTGTCAG GACAAATATA CTAGAGCCTT TATAATTAAG ACAGTTAATA GACAGATGGC 5473 .......... .......... .......... .......... .......... .......... 450 AAAGATGGTT CGACTCTAAA ATAGGAATTT AATAGTTGAT TTTACCCTAT ATAAATGGAA 5413 .......... .......... .......... .......... .......... .......... 450 TTGAAAATAG TGATTGCCAC TCAAAATCTA GGGTCAGCTG AGATTTATTG GATATTTCAA 5353 .......... .......... .......... .......... .......... .......... 450 TTTTGTGGTT GTGACTAAAA TGGCCCGAAT GTATGGCTGA GCAGTTTAAA GACCTGTGGA 5293 .......... .......... .......... .......... .......... .......... 450 AATAATGTGC TTCAGATTTT TTTTATTCTG TAATCAAATG TGGTGCTGCC TTATCTTTGA 5233 .......... .......... .......... .......... .......... .......... 450 AATAATTTCT TGTGCTTCTA CTCAATTTTT GTTGTGGCAA GCACCCTACT CTTGCTATGA 5173 .......... .......... .......... .......... .......... .......... 450 CTTGTGAATT TACTCTCCTT AAGTGATTCT TTTGTGGTGG ATGGTGCGCT AACAATCAGT 5113 .......... .......... .......... .......... .......... .......... 450 TTTGCTCTTC AGGGACCACT GGGATTGTGG ATTATACCAA CTATGACGAC ATGAAATATG 5053 | |||||| || || | | ||||||| || |||||| ||| |||||||||| .......... ..GAACCACT GGTATAATTG ATTATACAAA CTATGATGAC ATGAAATATG 498 CTGTAAGCTA TCTCCTGTTT CTTATTCTGT ATAATTATCC TCAATTTTTG TTCAAGATAT 4993 || CT........ .......... .......... .......... .......... .......... 500 TTGAAATATG TTTATGCTCG ACTAACGAGT GTAATTAATT TTCCTTGTAT GTAGATAAAA 4933 || ||| .......... .......... .......... .......... .......... ....ATCAAA 506 AAACTTGATG AATCTGAGTT TCGGAATGCT TTTTCTCGTT CAACAATTCG GGTATGATGT 4873 || ||||||| | |||||||| ||| ||||| ||||||||| | |||||||| AAGCTTGATG ACTCTGAGTT TCGAAATGCC TTTTCTCGTG CGACAATTCG A......... 557 GATTATAACT CAAATGATAT GATTGCAGGA TGCTTAGTGC CTTTTCTTTT GTTAGCCTAT 4813 .......... .......... .......... .......... .......... .......... 557 ACCATTGTCT TATGCTTCAT AAAAATATTG CTTTGTCTTA TGTAGGTGAA GGAACATGAT 4753 || || ||| |||| .......... .......... .......... .......... .....GTTAA AGAATATGAC 572 TCTAG 4748 || CGCAG 577 hqPGS_C06HBa0024L21.1-4-_SGN-E288997+ (8412 8324,8236 8171,8073 7999,7620 7494,7412 7366,7258 7201,5100 5051,4938 4882) ******************************************************************************** EST sequence 31 +strand 607 n (File: SGN-E316391+) 1 TGAGTCGGTC GAGTAGGACA CTTTATGTTG GCAATCTTCC TGGTGATGTT CGTGAGCGTG 61 AAGTGGAAGA TCTCTTTTAC AAGTATGGAC CGATTGCACA TATTGAGCTG AAAATTCCAC 121 CAAGACCCCC TGGTTATGCT TTTGTTGAGT TTGAAGAGGC TCGTGATGCT GAAGATGCTA 181 TTCGTGGTCG TGATGGCTAT GATTTTGATG GGCACCGTCT GCGGGTTGAG CTTGCACATG 241 GCGGGCGTGG TAACTCATCA TCAAATGATC GTTATGGTGG TGGCGGTGGC GGCCGTGGTC 301 AGCGTGGTGG AGGAGTGTCA AGACGTTCAG ATTATCGAGT GTTAGTTACA GGATTACCCC 361 ATTCAGCATC GTGGCAGGAT CTCAAGGATC ACATGCGCCG TGCTGGGGAT GTTTGTTTTC 421 TCCCAGTTTT CCGTGACGGG AGTGGAACCA CTGGTATAAT TGATTATACA AACTATGATG 481 ACATGAAATA TGCTATCAAA AAGCTTGATG ACTCTGAGTT NCGAAATGCC TTTTCTCGTG 541 CGACAATTCG AGTTNAAGAA TATGACCGCA GTCGAAGTCG CAGCCGCAGT CGCAGTCGCT 601 CTTACTC Predicted gene structure (within gDNA segment 9882 to 3496): Exon 1 8406 8324 ( 83 n); cDNA 1 83 ( 83 n); score: 0.880 Intron 1 8323 8237 ( 87 n); Pd: 1.000 (s: 0.90), Pa: 0.999 (s: 0.92) Exon 2 8236 8171 ( 66 n); cDNA 84 149 ( 66 n); score: 0.939 Intron 2 8170 8074 ( 97 n); Pd: 0.999 (s: 0.96), Pa: 0.998 (s: 0.90) Exon 3 8073 7999 ( 75 n); cDNA 150 224 ( 75 n); score: 0.880 Intron 3 7998 7621 ( 378 n); Pd: 0.996 (s: 0.88), Pa: 0.996 (s: 0.82) Exon 4 7620 7494 ( 127 n); cDNA 225 339 ( 115 n); score: 0.661 Intron 4 7493 7413 ( 81 n); Pd: 0.994 (s: 0.58), Pa: 0.994 (s: 0.91) Exon 5 7412 7366 ( 47 n); cDNA 340 386 ( 47 n); score: 0.915 Intron 5 7365 7259 ( 107 n); Pd: 0.700 (s: 0.91), Pa: 0.998 (s: 0.85) Exon 6 7258 7201 ( 58 n); cDNA 387 444 ( 58 n); score: 0.853 Intron 6 7200 5101 (2100 n); Pd: 0.922 (s: 0.85), Pa: 0.926 (s: 0.86) Exon 7 5100 5051 ( 50 n); cDNA 445 494 ( 50 n); score: 0.860 Intron 7 5050 4939 ( 112 n); Pd: 0.999 (s: 0.86), Pa: 0.959 (s: 0.84) Exon 8 4938 4882 ( 57 n); cDNA 495 551 ( 57 n); score: 0.842 Intron 8 4881 4768 ( 114 n); Pd: 0.871 (s: 0.84), Pa: 0.999 (s: 0) Exon 9 4767 4755 ( 13 n); cDNA 552 564 ( 13 n); score: 0.692 MATCH C06HBa0024L21.1-4- SGN-E316391+ 0.825 576 0.949 C PGS_C06HBa0024L21.1-4-_SGN-E316391+ (8406 8324,8236 8171,8073 7999,7620 7494,7412 7366,7258 7201,5100 5051,4938 4882,4767 4755) Alignment (genomic DNA sequence = upper lines): TGAGTCGTTC AAGTAGGACG ATTTATGTTG GTAATCTTCC TGGTGATATT CGTGAGCGAG 8347 ||||||| || |||||||| ||||||||| | |||||||| ||||||| || |||||||| | TGAGTCGGTC GAGTAGGACA CTTTATGTTG GCAATCTTCC TGGTGATGTT CGTGAGCGTG 60 AAGTGGAGGA TCTGTTCTAC AAGGTACTTG TATAACACTT AGCTTCATAC TTTAGTTGGA 8287 ||||||| || ||| || ||| ||| AAGTGGAAGA TCTCTTTTAC AAG....... .......... .......... .......... 83 TGTCATTTAC TATGCTCATA AACTTAAATG TGTGTGGCGT ATAATTGTAG TATGGCCCGA 8227 ||||| |||| .......... .......... .......... .......... .......... TATGGACCGA 93 TAGCACATAT TGATCTGAAA ATTCCACCAA GACCCCCAGG TTATGCTTTT GTTGAGGTAA 8167 | |||||||| ||| |||||| |||||||||| ||||||| || |||||||||| |||||| TTGCACATAT TGAGCTGAAA ATTCCACCAA GACCCCCTGG TTATGCTTTT GTTGAG.... 149 GTTTTGACTG CATTGGCTAA AATGAATTTC ATTGGATATT TCCTTCTCAA TTGTTAACCT 8107 .......... .......... .......... .......... .......... .......... 149 ATTTTGACAT TGTTTTGTTG GAACTAAACA CAGTTTGAAG AGGCACGCGA TGCTGAGGAT 8047 ||||||| |||| || || |||||| ||| .......... .......... .......... ...TTTGAAG AGGCTCGTGA TGCTGAAGAT 176 GCTATTCGTG GGCGCGATGG CTATGAATTT GATGGGCATC GTTTGAGGGT TAGTAAAATC 7987 |||||||||| | || ||||| |||||| ||| |||||||| | || || || GCTATTCGTG GTCGTGATGG CTATGATTTT GATGGGCACC GTCTGCGG.. .......... 224 TTAACAGCAT ATAGGATACA CACACATGAA TCAATTGTAT CCTCTGTTTA CTCTGAGAAG 7927 .......... .......... .......... .......... .......... .......... 224 TATGATTGAC TTGCATTTTT GAATCAGGGT TTCCAATTCT TGTATTAATT GCATTTCGTT 7867 .......... .......... .......... .......... .......... .......... 224 GACCCTAGCA TTTCACCTAA ACCATTATGT TTCTTTATTA AATGCTTGTC CCAAATTAGT 7807 .......... .......... .......... .......... .......... .......... 224 TGGGATCAGT TTTATAAATT GTCTGTAACC ATCCTACTTT ATCCAGGCGT ATTTTTCTTT 7747 .......... .......... .......... .......... .......... .......... 224 TCAAGCTTAG TTTGTCTTTC AAGGCAAATT AACATGTCTA ATACATATAA GACACCTAAA 7687 .......... .......... .......... .......... .......... .......... 224 TGCTAAATAG TTTTCTTTTT GAGGTGCTTA AGATCTAAGC CTACTGAAAC TGTTACATGT 7627 .......... .......... .......... .......... .......... .......... 224 ATGCAGGTTG AGCTTGCACA TGGTGGGCGT GGTAACTCAT CGTCAGATCG TTATAATAGT 7567 |||| |||||||||| ||| |||||| |||||||||| | ||| | || || || ......GTTG AGCTTGCACA TGGCGGGCGT GGTAACTCAT CATCA-A--- --ATGATCGT 272 GGCAATAATA GTGGCCATAA TGGTGGTCGT AATAATCACA AATTTGGAGC GCCCAAACGT 7507 || | |||| | ||| || ||| | | | |||| | | | |||| ---TATGGTG GTGG-C--GG TGGCGGCCGT GGTCAGCGTG GTGGAGGAGT GTCAAGACGT 326 ACCGAGTATC GAGGCACGTA TGTTATTAAT GTGCACATAA TTTTCTTTAT TGCATTTCAT 7447 | || |||| ||| TCAGATTATC GAG....... .......... .......... .......... .......... 339 GCCTTCTTGA TCTAATTCAC TTACTCATTT TCAGTTTTAG TTACCGGATT GCCCCATTCA 7387 | |||| |||| ||||| ||||||||| .......... .......... .......... ....TGTTAG TTACAGGATT ACCCCATTCA 365 GCATCCTGGC AGGATCTCAA GGTGAGTGGT GTCTGTGTGG TAAATTATAA GGACCGTGGC 7327 ||||| |||| |||||||||| | GCATCGTGGC AGGATCTCAA G......... .......... .......... .......... 386 TAAAAGTGAT CTTCCTTTTC TGGTATCTTC TAGCTTCTGA ATATTGGTAT TCTATGTTTC 7267 .......... .......... .......... .......... .......... .......... 386 TTATGTAGGA TCATATGCGT CGAGCTGGGG ATGTTTG-TT TCTCACAAGT TTTCCGTGAG 7208 || ||| ||||| || ||||||| ||||||| || |||| | ||| ||||||||| ........GA TCACATGCGC CGTGCTGGGG ATGTTTGTTT TCTC-CCAGT TTTCCGTGAC 437 GGGAGTGGTA AGATAATTTG CAACAGATAC TAGTTTTATG CTCCTCTTAA TTGTCCCTTT 7148 ||||||| GGGAGTG... .......... .......... .......... .......... .......... 444 GTTTTGTTTG TATAAGGGTT TGTTTTTACT ATGCCAAAGG AACTTGCCTA TATCAGGACC 7088 .......... .......... .......... .......... .......... .......... 444 TATATTGGTA AATTTGGTAA ATTAAGAGTC AAGTCTCTAT AACTACCCTT TCTCTTTTTT 7028 .......... .......... .......... .......... .......... .......... 444 TCCTTTTCCG TCTTTCTGTT GGGTTTTCTT CTTTGAGAAG TGGTTGGAGA AGGATGGATA 6968 .......... .......... .......... .......... .......... .......... 444 TTTGATCCTT TTTTTTGAGA ATAGCAATAT ATTTTCTGTG GATAACTTGA ATTTCAATTG 6908 .......... .......... .......... .......... .......... .......... 444 TTTTTATGGC TCTTTAACTT ACTACCTTGA GCTGACTATC TTTCATAATG CAACTAGAAA 6848 .......... .......... .......... .......... .......... .......... 444 GGCTTTCTCA AAGTAGAATC ATTTCTTAAA TCTTGTGTTG AATGTGACTG TGGTTCATCA 6788 .......... .......... .......... .......... .......... .......... 444 TTGGGTCTGC AAGTGTCTTT CCCAACCATA TAACAGCTAA TATTATCTTT CAGACCCAAT 6728 .......... .......... .......... .......... .......... .......... 444 CAAAACCAAA TCTTGTTCTA TGGCCCGTGA ATAGATGATA TTTTTGGGCT ATTGTTGAGA 6668 .......... .......... .......... .......... .......... .......... 444 ACAAAATTGC TGTACGCTGC AGTAACGTGC ATTAGTTATA TATTTGATGA CTTCTGGCTT 6608 .......... .......... .......... .......... .......... .......... 444 AGTTTATAGT TTATAGTTTA TACTATAATG TTTAGCCAAC TTGGCTGGAT AAAGTGACTG 6548 .......... .......... .......... .......... .......... .......... 444 CGTCACTCAG TTTGGATGGG ATAATGGGTG CTATTACCAA TCTTGGTAAA ATGGTCAGGT 6488 .......... .......... .......... .......... .......... .......... 444 TTGATATATT ATATATCCTT TGACTGAAGT TTGTCATTGT ACATCATCAT TCAAAACATA 6428 .......... .......... .......... .......... .......... .......... 444 GTTCCATCCG TTTTAGTCAG AAAACTATTT TTCTCTTCTG GTGCCATAGT AATATAATAG 6368 .......... .......... .......... .......... .......... .......... 444 AACAAGAAAG AATTACAGAA AGTTAAAAAG TATTAACATA AAAAAAAAGT AGATGAAAAA 6308 .......... .......... .......... .......... .......... .......... 444 TTTGTTGGGG TAACGCATAA AGTAAAAAAA ATAGCAGGGA AAAATAAAAT GGAGCAGAAA 6248 .......... .......... .......... .......... .......... .......... 444 AAGAGAAAGG AGGGAAGTCT AAAAGAAATC CTTGGTTTGG GGTTGAGGAA AGACGGTAAT 6188 .......... .......... .......... .......... .......... .......... 444 GTTTCAACCC AGGTGTTGTA GAAGAGTAGA TTAATTATTT TTTGGGGCAT TTGTTGGAGA 6128 .......... .......... .......... .......... .......... .......... 444 GGTAAGTGGG AGCTCTGTTG GACGATGAGG AGAAGATAGC AGGAAATAAG TGAGCTTATT 6068 .......... .......... .......... .......... .......... .......... 444 TTTTCATCTT CCATGTTGAA TAACATCCTG TGCTTACCTG TGTATTCCTC ACTCTTTGAA 6008 .......... .......... .......... .......... .......... .......... 444 TAAATGTTGA TGTGTGTCTG GATGTAATGC CTGGATTATG TCCCGCCTGG TGATAGTGGT 5948 .......... .......... .......... .......... .......... .......... 444 CCTCCATAAC AAGATAGTAC TGCTATCTGG CTTATTGCAT GTTACCAACC TTGAACAAGC 5888 .......... .......... .......... .......... .......... .......... 444 CAAGATAATG AAGAGGCTAA TCTAATAAGT GGGCTTAACA ATGGATACAC CAAGAATAGG 5828 .......... .......... .......... .......... .......... .......... 444 AGTGGGTCTG GCTCTAATAT CATACCATGT TAAGTGGAAA ATTTGGGCCC AACTCAACTC 5768 .......... .......... .......... .......... .......... .......... 444 CAAAAGGTAC CTTAGTGCCA GATCATGCAA TAAGATCTCT TTTTCCCTCT TTCCTTCATG 5708 .......... .......... .......... .......... .......... .......... 444 TTTCAGATCA TGCTAACTCA ACTCCAAAAG GTAGCTTAGT GCAAGATCAT GCAATAAGAT 5648 .......... .......... .......... .......... .......... .......... 444 CTCTTTTTAC CTCTTTCCTT TAATGTTTCA GATTATGCAA TAAGATAACT TTCCTTCTTT 5588 .......... .......... .......... .......... .......... .......... 444 CCTTTAATTG TTTCAGTTAG CTTGCTATTA GGTTTTACAT AGAAAATTGT CATCATTTTT 5528 .......... .......... .......... .......... .......... .......... 444 GTCAGGACAA ATATACTAGA GCCTTTATAA TTAAGACAGT TAATAGACAG ATGGCAAAGA 5468 .......... .......... .......... .......... .......... .......... 444 TGGTTCGACT CTAAAATAGG AATTTAATAG TTGATTTTAC CCTATATAAA TGGAATTGAA 5408 .......... .......... .......... .......... .......... .......... 444 AATAGTGATT GCCACTCAAA ATCTAGGGTC AGCTGAGATT TATTGGATAT TTCAATTTTG 5348 .......... .......... .......... .......... .......... .......... 444 TGGTTGTGAC TAAAATGGCC CGAATGTATG GCTGAGCAGT TTAAAGACCT GTGGAAATAA 5288 .......... .......... .......... .......... .......... .......... 444 TGTGCTTCAG ATTTTTTTTA TTCTGTAATC AAATGTGGTG CTGCCTTATC TTTGAAATAA 5228 .......... .......... .......... .......... .......... .......... 444 TTTCTTGTGC TTCTACTCAA TTTTTGTTGT GGCAAGCACC CTACTCTTGC TATGACTTGT 5168 .......... .......... .......... .......... .......... .......... 444 GAATTTACTC TCCTTAAGTG ATTCTTTTGT GGTGGATGGT GCGCTAACAA TCAGTTTTGC 5108 .......... .......... .......... .......... .......... .......... 444 TCTTCAGGGA CCACTGGGAT TGTGGATTAT ACCAACTATG ACGACATGAA ATATGCTGTA 5048 | | ||||||| || | |||||| || ||||||| | |||||||| ||||||| .......GAA CCACTGGTAT AATTGATTAT ACAAACTATG ATGACATGAA ATATGCT... 494 AGCTATCTCC TGTTTCTTAT TCTGTATAAT TATCCTCAAT TTTTGTTCAA GATATTTGAA 4988 .......... .......... .......... .......... .......... .......... 494 ATATGTTTAT GCTCGACTAA CGAGTGTAAT TAATTTTCCT TGTATGTAGA TAAAAAAACT 4928 | | ||||| || .......... .......... .......... .......... .........A TCAAAAAGCT 505 TGATGAATCT GAGTTTCGGA ATGCTTTTTC TCGTTCAACA ATTCGGGTAT GATGTGATTA 4868 |||||| ||| ||||| || | |||| ||||| |||| | ||| ||||| TGATGACTCT GAGTTNCGAA ATGCCTTTTC TCGTGCGACA ATTCGA.... .......... 551 TAACTCAAAT GATATGATTG CAGGATGCTT AGTGCCTTTT CTTTTGTTAG CCTATACCAT 4808 .......... .......... .......... .......... .......... .......... 551 TGTCTTATGC TTCATAAAAA TATTGCTTTG TCTTATGTAG GTGAAGGAAC ATG 4755 || | ||| ||| .......... .......... .......... .......... GTTNAAGAAT ATG 564 hqPGS_C06HBa0024L21.1-4-_SGN-E316391+ (8406 8324,8236 8171,8073 7999,7620 7494,7412 7366,7258 7201,5100 5051,4938 4882) ******************************************************************************** EST sequence 55 +strand 551 n (File: SGN-E246019+) 1 GGAACAATGA GTCGGTCGAG TAGGACACTT TATGTTGGCA ATCTTCCTGG TGATGTTCGT 61 GAGCGTGAAG TGGAAGATCT CTTTTACAAG TATGGACCGA TTGCACATAT TGAGCTGAAA 121 ATTCCACCAA GACCCCCTGG TTATGCTTTT GTTGAGTTTG AAGAGGCTCG TGATGCTGAA 181 GATGCTATTC GTGGTCGTGA TGGCTATGAT TTTGATGGGC ACCGTCTGCG GGTTGAGCTT 241 GCACATGGCG GGCGTGGTAA CTCATCATCA AATGATCGTT ATGGTGGTGG CGGTGGCGGC 301 CGTGGTCAGC GTGGTGGAGG AGTGTCAAGA CGTTCAGATT ATCGAGTGTT AGTTACAGGA 361 TTACCCCATT CAGCATCGTG GCAGGATCTC AAGGATCACA TGCGCCGTGC TGGGGATGTT 421 TGTTTCTCCC AAGTTTTCCG TGACGGGAGT GGAACCACTG GTATAATTGA TTATACAAAC 481 TATGATGACA TGAAATATGC TATCAAAAAG CTTGATGACT CTGAGTTTCG AAATGCCTTT 541 TCTCGTGCGA C Predicted gene structure (within gDNA segment 9883 to 4126): Exon 1 8413 8324 ( 90 n); cDNA 1 90 ( 90 n); score: 0.889 Intron 1 8323 8237 ( 87 n); Pd: 1.000 (s: 0.90), Pa: 0.999 (s: 0.92) Exon 2 8236 8171 ( 66 n); cDNA 91 156 ( 66 n); score: 0.939 Intron 2 8170 8074 ( 97 n); Pd: 0.999 (s: 0.96), Pa: 0.998 (s: 0.90) Exon 3 8073 7999 ( 75 n); cDNA 157 231 ( 75 n); score: 0.880 Intron 3 7998 7621 ( 378 n); Pd: 0.996 (s: 0.88), Pa: 0.996 (s: 0.82) Exon 4 7620 7494 ( 127 n); cDNA 232 346 ( 115 n); score: 0.661 Intron 4 7493 7413 ( 81 n); Pd: 0.994 (s: 0.58), Pa: 0.994 (s: 0.91) Exon 5 7412 7366 ( 47 n); cDNA 347 393 ( 47 n); score: 0.915 Intron 5 7365 7259 ( 107 n); Pd: 0.700 (s: 0.91), Pa: 0.998 (s: 0.92) Exon 6 7258 7201 ( 58 n); cDNA 394 451 ( 58 n); score: 0.914 Intron 6 7200 5101 (2100 n); Pd: 0.922 (s: 0.92), Pa: 0.926 (s: 0.86) Exon 7 5100 5051 ( 50 n); cDNA 452 501 ( 50 n); score: 0.860 Intron 7 5050 4939 ( 112 n); Pd: 0.999 (s: 0.86), Pa: 0.959 (s: 0.86) Exon 8 4938 4889 ( 50 n); cDNA 502 551 ( 50 n); score: 0.860 MATCH C06HBa0024L21.1-4- SGN-E246019+ 0.835 563 1.022 C PGS_C06HBa0024L21.1-4-_SGN-E246019+ (8413 8324,8236 8171,8073 7999,7620 7494,7412 7366,7258 7201,5100 5051,4938 4889) Alignment (genomic DNA sequence = upper lines): GGAACAATGA GTCGTTCAAG TAGGACGATT TATGTTGGTA ATCTTCCTGG TGATATTCGT 8354 |||||||||| |||| || || |||||| || |||||||| | |||||||||| |||| ||||| GGAACAATGA GTCGGTCGAG TAGGACACTT TATGTTGGCA ATCTTCCTGG TGATGTTCGT 60 GAGCGAGAAG TGGAGGATCT GTTCTACAAG GTACTTGTAT AACACTTAGC TTCATACTTT 8294 ||||| |||| |||| ||||| || |||||| GAGCGTGAAG TGGAAGATCT CTTTTACAAG .......... .......... .......... 90 AGTTGGATGT CATTTACTAT GCTCATAAAC TTAAATGTGT GTGGCGTATA ATTGTAGTAT 8234 ||| .......... .......... .......... .......... .......... .......TAT 93 GGCCCGATAG CACATATTGA TCTGAAAATT CCACCAAGAC CCCCAGGTTA TGCTTTTGTT 8174 || ||||| | |||||||||| ||||||||| |||||||||| |||| ||||| |||||||||| GGACCGATTG CACATATTGA GCTGAAAATT CCACCAAGAC CCCCTGGTTA TGCTTTTGTT 153 GAGGTAAGTT TTGACTGCAT TGGCTAAAAT GAATTTCATT GGATATTTCC TTCTCAATTG 8114 ||| GAG....... .......... .......... .......... .......... .......... 156 TTAACCTATT TTGACATTGT TTTGTTGGAA CTAAACACAG TTTGAAGAGG CACGCGATGC 8054 |||||||||| | || ||||| .......... .......... .......... .......... TTTGAAGAGG CTCGTGATGC 176 TGAGGATGCT ATTCGTGGGC GCGATGGCTA TGAATTTGAT GGGCATCGTT TGAGGGTTAG 7994 ||| |||||| |||||||| | | |||||||| ||| |||||| ||||| ||| || || TGAAGATGCT ATTCGTGGTC GTGATGGCTA TGATTTTGAT GGGCACCGTC TGCGG..... 231 TAAAATCTTA ACAGCATATA GGATACACAC ACATGAATCA ATTGTATCCT CTGTTTACTC 7934 .......... .......... .......... .......... .......... .......... 231 TGAGAAGTAT GATTGACTTG CATTTTTGAA TCAGGGTTTC CAATTCTTGT ATTAATTGCA 7874 .......... .......... .......... .......... .......... .......... 231 TTTCGTTGAC CCTAGCATTT CACCTAAACC ATTATGTTTC TTTATTAAAT GCTTGTCCCA 7814 .......... .......... .......... .......... .......... .......... 231 AATTAGTTGG GATCAGTTTT ATAAATTGTC TGTAACCATC CTACTTTATC CAGGCGTATT 7754 .......... .......... .......... .......... .......... .......... 231 TTTCTTTTCA AGCTTAGTTT GTCTTTCAAG GCAAATTAAC ATGTCTAATA CATATAAGAC 7694 .......... .......... .......... .......... .......... .......... 231 ACCTAAATGC TAAATAGTTT TCTTTTTGAG GTGCTTAAGA TCTAAGCCTA CTGAAACTGT 7634 .......... .......... .......... .......... .......... .......... 231 TACATGTATG CAGGTTGAGC TTGCACATGG TGGGCGTGGT AACTCATCGT CAGATCGTTA 7574 ||||||| |||||||||| ||||||||| |||||||| | || | | .......... ...GTTGAGC TTGCACATGG CGGGCGTGGT AACTCATCAT CA-A-----A 272 TAATAGTGGC AATAATAGTG GCCATAATGG TGGTCGTAAT AATCACAAAT TTGGAGCGCC 7514 | || || || | ||| | | ||| || ||| | | | |||| | | TGATCGT--- TATGGTGGTG G-C--GGTGG CGGCCGTGGT CAGCGTGGTG GAGGAGTGTC 326 CAAACGTACC GAGTATCGAG GCACGTATGT TATTAATGTG CACATAATTT TCTTTATTGC 7454 | |||| | || ||||||| AAGACGTTCA GATTATCGAG .......... .......... .......... .......... 346 ATTTCATGCC TTCTTGATCT AATTCACTTA CTCATTTTCA GTTTTAGTTA CCGGATTGCC 7394 | ||||||| | ||||| || .......... .......... .......... .......... .TGTTAGTTA CAGGATTACC 365 CCATTCAGCA TCCTGGCAGG ATCTCAAGGT GAGTGGTGTC TGTGTGGTAA ATTATAAGGA 7334 |||||||||| || ||||||| |||||||| CCATTCAGCA TCGTGGCAGG ATCTCAAG.. .......... .......... .......... 393 CCGTGGCTAA AAGTGATCTT CCTTTTCTGG TATCTTCTAG CTTCTGAATA TTGGTATTCT 7274 .......... .......... .......... .......... .......... .......... 393 ATGTTTCTTA TGTAGGATCA TATGCGTCGA GCTGGGGATG TTTGTTTCTC ACAAGTTTTC 7214 ||||| ||||| || |||||||||| |||||||||| ||||||||| .......... .....GATCA CATGCGCCGT GCTGGGGATG TTTGTTTCTC CCAAGTTTTC 438 CGTGAGGGGA GTGGTAAGAT AATTTGCAAC AGATACTAGT TTTATGCTCC TCTTAATTGT 7154 ||||| |||| ||| CGTGACGGGA GTG....... .......... .......... .......... .......... 451 CCCTTTGTTT TGTTTGTATA AGGGTTTGTT TTTACTATGC CAAAGGAACT TGCCTATATC 7094 .......... .......... .......... .......... .......... .......... 451 AGGACCTATA TTGGTAAATT TGGTAAATTA AGAGTCAAGT CTCTATAACT ACCCTTTCTC 7034 .......... .......... .......... .......... .......... .......... 451 TTTTTTTCCT TTTCCGTCTT TCTGTTGGGT TTTCTTCTTT GAGAAGTGGT TGGAGAAGGA 6974 .......... .......... .......... .......... .......... .......... 451 TGGATATTTG ATCCTTTTTT TTGAGAATAG CAATATATTT TCTGTGGATA ACTTGAATTT 6914 .......... .......... .......... .......... .......... .......... 451 CAATTGTTTT TATGGCTCTT TAACTTACTA CCTTGAGCTG ACTATCTTTC ATAATGCAAC 6854 .......... .......... .......... .......... .......... .......... 451 TAGAAAGGCT TTCTCAAAGT AGAATCATTT CTTAAATCTT GTGTTGAATG TGACTGTGGT 6794 .......... .......... .......... .......... .......... .......... 451 TCATCATTGG GTCTGCAAGT GTCTTTCCCA ACCATATAAC AGCTAATATT ATCTTTCAGA 6734 .......... .......... .......... .......... .......... .......... 451 CCCAATCAAA ACCAAATCTT GTTCTATGGC CCGTGAATAG ATGATATTTT TGGGCTATTG 6674 .......... .......... .......... .......... .......... .......... 451 TTGAGAACAA AATTGCTGTA CGCTGCAGTA ACGTGCATTA GTTATATATT TGATGACTTC 6614 .......... .......... .......... .......... .......... .......... 451 TGGCTTAGTT TATAGTTTAT AGTTTATACT ATAATGTTTA GCCAACTTGG CTGGATAAAG 6554 .......... .......... .......... .......... .......... .......... 451 TGACTGCGTC ACTCAGTTTG GATGGGATAA TGGGTGCTAT TACCAATCTT GGTAAAATGG 6494 .......... .......... .......... .......... .......... .......... 451 TCAGGTTTGA TATATTATAT ATCCTTTGAC TGAAGTTTGT CATTGTACAT CATCATTCAA 6434 .......... .......... .......... .......... .......... .......... 451 AACATAGTTC CATCCGTTTT AGTCAGAAAA CTATTTTTCT CTTCTGGTGC CATAGTAATA 6374 .......... .......... .......... .......... .......... .......... 451 TAATAGAACA AGAAAGAATT ACAGAAAGTT AAAAAGTATT AACATAAAAA AAAAGTAGAT 6314 .......... .......... .......... .......... .......... .......... 451 GAAAAATTTG TTGGGGTAAC GCATAAAGTA AAAAAAATAG CAGGGAAAAA TAAAATGGAG 6254 .......... .......... .......... .......... .......... .......... 451 CAGAAAAAGA GAAAGGAGGG AAGTCTAAAA GAAATCCTTG GTTTGGGGTT GAGGAAAGAC 6194 .......... .......... .......... .......... .......... .......... 451 GGTAATGTTT CAACCCAGGT GTTGTAGAAG AGTAGATTAA TTATTTTTTG GGGCATTTGT 6134 .......... .......... .......... .......... .......... .......... 451 TGGAGAGGTA AGTGGGAGCT CTGTTGGACG ATGAGGAGAA GATAGCAGGA AATAAGTGAG 6074 .......... .......... .......... .......... .......... .......... 451 CTTATTTTTT CATCTTCCAT GTTGAATAAC ATCCTGTGCT TACCTGTGTA TTCCTCACTC 6014 .......... .......... .......... .......... .......... .......... 451 TTTGAATAAA TGTTGATGTG TGTCTGGATG TAATGCCTGG ATTATGTCCC GCCTGGTGAT 5954 .......... .......... .......... .......... .......... .......... 451 AGTGGTCCTC CATAACAAGA TAGTACTGCT ATCTGGCTTA TTGCATGTTA CCAACCTTGA 5894 .......... .......... .......... .......... .......... .......... 451 ACAAGCCAAG ATAATGAAGA GGCTAATCTA ATAAGTGGGC TTAACAATGG ATACACCAAG 5834 .......... .......... .......... .......... .......... .......... 451 AATAGGAGTG GGTCTGGCTC TAATATCATA CCATGTTAAG TGGAAAATTT GGGCCCAACT 5774 .......... .......... .......... .......... .......... .......... 451 CAACTCCAAA AGGTACCTTA GTGCCAGATC ATGCAATAAG ATCTCTTTTT CCCTCTTTCC 5714 .......... .......... .......... .......... .......... .......... 451 TTCATGTTTC AGATCATGCT AACTCAACTC CAAAAGGTAG CTTAGTGCAA GATCATGCAA 5654 .......... .......... .......... .......... .......... .......... 451 TAAGATCTCT TTTTACCTCT TTCCTTTAAT GTTTCAGATT ATGCAATAAG ATAACTTTCC 5594 .......... .......... .......... .......... .......... .......... 451 TTCTTTCCTT TAATTGTTTC AGTTAGCTTG CTATTAGGTT TTACATAGAA AATTGTCATC 5534 .......... .......... .......... .......... .......... .......... 451 ATTTTTGTCA GGACAAATAT ACTAGAGCCT TTATAATTAA GACAGTTAAT AGACAGATGG 5474 .......... .......... .......... .......... .......... .......... 451 CAAAGATGGT TCGACTCTAA AATAGGAATT TAATAGTTGA TTTTACCCTA TATAAATGGA 5414 .......... .......... .......... .......... .......... .......... 451 ATTGAAAATA GTGATTGCCA CTCAAAATCT AGGGTCAGCT GAGATTTATT GGATATTTCA 5354 .......... .......... .......... .......... .......... .......... 451 ATTTTGTGGT TGTGACTAAA ATGGCCCGAA TGTATGGCTG AGCAGTTTAA AGACCTGTGG 5294 .......... .......... .......... .......... .......... .......... 451 AAATAATGTG CTTCAGATTT TTTTTATTCT GTAATCAAAT GTGGTGCTGC CTTATCTTTG 5234 .......... .......... .......... .......... .......... .......... 451 AAATAATTTC TTGTGCTTCT ACTCAATTTT TGTTGTGGCA AGCACCCTAC TCTTGCTATG 5174 .......... .......... .......... .......... .......... .......... 451 ACTTGTGAAT TTACTCTCCT TAAGTGATTC TTTTGTGGTG GATGGTGCGC TAACAATCAG 5114 .......... .......... .......... .......... .......... .......... 451 TTTTGCTCTT CAGGGACCAC TGGGATTGTG GATTATACCA ACTATGACGA CATGAAATAT 5054 | ||||| ||| || | |||||||| | ||||||| || |||||||||| .......... ...GAACCAC TGGTATAATT GATTATACAA ACTATGATGA CATGAAATAT 498 GCTGTAAGCT ATCTCCTGTT TCTTATTCTG TATAATTATC CTCAATTTTT GTTCAAGATA 4994 ||| GCT....... .......... .......... .......... .......... .......... 501 TTTGAAATAT GTTTATGCTC GACTAACGAG TGTAATTAAT TTTCCTTGTA TGTAGATAAA 4934 || || .......... .......... .......... .......... .......... .....ATCAA 506 AAAACTTGAT GAATCTGAGT TTCGGAATGC TTTTTCTCGT TCAAC 4889 ||| |||||| || ||||||| |||| ||||| ||||||||| | || AAAGCTTGAT GACTCTGAGT TTCGAAATGC CTTTTCTCGT GCGAC 551 hqPGS_C06HBa0024L21.1-4-_SGN-E246019+ (8413 8324,8236 8171,8073 7999,7620 7494,7412 7366,7258 7201,5100 5051,4938 4889) ******************************************************************************** EST sequence 27 +strand 561 n (File: SGN-E315505+) 1 TCGATCTTCC CAGGAACAAT GAGTCGGTCG AGTAGGACAC TTTATGTTGG CAATCTTCCT 61 GGTGATGTTC GTGAGCGTGA AGTGGAAGAT CTCTTTTACA AGTATGGACC GATTGCACAT 121 ATTGAGCTGA AAATTCCACC AAGACCCCCT GGTTATGCTT TTGTTGAGTT TGAAGAGGCT 181 CGTGATGCTG AAGATGCTAT TCGTGGTCGT GATGGCTATG ATTTTGATGG GCACCGTCTG 241 CGGGTTGAGC TTGCACATGG CGGGCGTGGT AACTCATCAT CAAATGATCG TTATGGTGGT 301 GGCGGTGGCG GCCGTGGTCA NCGTGGTGGA GGAGTGTCAA GACGTTCAGA TTATCGAGTG 361 TTAGTTACAG GATTACCCCA TTCAGCATCG TGGCAGGATC TCAAGGATCA CATGCGCCGT 421 GCTGGGGATG TTTGTTTCTC CCAAGTTTTC CGTGACGGGA GTGGAACCAC TGGTATAATT 481 GATTATACAA ACTATGATGA CATGAAATAT GCTATCAAAA AGCTTGATGA CTCTGAGTTT 541 CGAAATGCCT TTTCTCGTGC G Predicted gene structure (within gDNA segment 9883 to 4146): Exon 1 8419 8324 ( 96 n); cDNA 7 102 ( 96 n); score: 0.865 Intron 1 8323 8237 ( 87 n); Pd: 1.000 (s: 0.90), Pa: 0.999 (s: 0.92) Exon 2 8236 8171 ( 66 n); cDNA 103 168 ( 66 n); score: 0.939 Intron 2 8170 8074 ( 97 n); Pd: 0.999 (s: 0.96), Pa: 0.998 (s: 0.90) Exon 3 8073 7999 ( 75 n); cDNA 169 243 ( 75 n); score: 0.880 Intron 3 7998 7621 ( 378 n); Pd: 0.996 (s: 0.88), Pa: 0.996 (s: 0.82) Exon 4 7620 7494 ( 127 n); cDNA 244 358 ( 115 n); score: 0.661 Intron 4 7493 7413 ( 81 n); Pd: 0.994 (s: 0.58), Pa: 0.994 (s: 0.91) Exon 5 7412 7366 ( 47 n); cDNA 359 405 ( 47 n); score: 0.915 Intron 5 7365 7259 ( 107 n); Pd: 0.700 (s: 0.91), Pa: 0.998 (s: 0.92) Exon 6 7258 7201 ( 58 n); cDNA 406 463 ( 58 n); score: 0.914 Intron 6 7200 5101 (2100 n); Pd: 0.922 (s: 0.92), Pa: 0.926 (s: 0.86) Exon 7 5100 5051 ( 50 n); cDNA 464 513 ( 50 n); score: 0.860 Intron 7 5050 4939 ( 112 n); Pd: 0.999 (s: 0.86), Pa: 0.959 (s: 0.89) Exon 8 4938 4894 ( 45 n); cDNA 514 558 ( 45 n); score: 0.889 MATCH C06HBa0024L21.1-4- SGN-E315505+ 0.828 564 1.005 C PGS_C06HBa0024L21.1-4-_SGN-E315505+ (8419 8324,8236 8171,8073 7999,7620 7494,7412 7366,7258 7201,5100 5051,4938 4894) Alignment (genomic DNA sequence = upper lines): TTTTTAGGAA CAATGAGTCG TTCAAGTAGG ACGATTTATG TTGGTAATCT TCCTGGTGAT 8360 || ||||| |||||||||| || |||||| || |||||| |||| ||||| |||||||||| TTCCCAGGAA CAATGAGTCG GTCGAGTAGG ACACTTTATG TTGGCAATCT TCCTGGTGAT 66 ATTCGTGAGC GAGAAGTGGA GGATCTGTTC TACAAGGTAC TTGTATAACA CTTAGCTTCA 8300 ||||||||| | |||||||| ||||| || |||||| GTTCGTGAGC GTGAAGTGGA AGATCTCTTT TACAAG.... .......... .......... 102 TACTTTAGTT GGATGTCATT TACTATGCTC ATAAACTTAA ATGTGTGTGG CGTATAATTG 8240 .......... .......... .......... .......... .......... .......... 102 TAGTATGGCC CGATAGCACA TATTGATCTG AAAATTCCAC CAAGACCCCC AGGTTATGCT 8180 ||||| | |||| ||||| |||||| ||| |||||||||| |||||||||| ||||||||| ...TATGGAC CGATTGCACA TATTGAGCTG AAAATTCCAC CAAGACCCCC TGGTTATGCT 159 TTTGTTGAGG TAAGTTTTGA CTGCATTGGC TAAAATGAAT TTCATTGGAT ATTTCCTTCT 8120 ||||||||| TTTGTTGAG. .......... .......... .......... .......... .......... 168 CAATTGTTAA CCTATTTTGA CATTGTTTTG TTGGAACTAA ACACAGTTTG AAGAGGCACG 8060 |||| ||||||| || .......... .......... .......... .......... ......TTTG AAGAGGCTCG 182 CGATGCTGAG GATGCTATTC GTGGGCGCGA TGGCTATGAA TTTGATGGGC ATCGTTTGAG 8000 |||||||| |||||||||| |||| || || ||||||||| |||||||||| | ||| || | TGATGCTGAA GATGCTATTC GTGGTCGTGA TGGCTATGAT TTTGATGGGC ACCGTCTGCG 242 GGTTAGTAAA ATCTTAACAG CATATAGGAT ACACACACAT GAATCAATTG TATCCTCTGT 7940 | G......... .......... .......... .......... .......... .......... 243 TTACTCTGAG AAGTATGATT GACTTGCATT TTTGAATCAG GGTTTCCAAT TCTTGTATTA 7880 .......... .......... .......... .......... .......... .......... 243 ATTGCATTTC GTTGACCCTA GCATTTCACC TAAACCATTA TGTTTCTTTA TTAAATGCTT 7820 .......... .......... .......... .......... .......... .......... 243 GTCCCAAATT AGTTGGGATC AGTTTTATAA ATTGTCTGTA ACCATCCTAC TTTATCCAGG 7760 .......... .......... .......... .......... .......... .......... 243 CGTATTTTTC TTTTCAAGCT TAGTTTGTCT TTCAAGGCAA ATTAACATGT CTAATACATA 7700 .......... .......... .......... .......... .......... .......... 243 TAAGACACCT AAATGCTAAA TAGTTTTCTT TTTGAGGTGC TTAAGATCTA AGCCTACTGA 7640 .......... .......... .......... .......... .......... .......... 243 AACTGTTACA TGTATGCAGG TTGAGCTTGC ACATGGTGGG CGTGGTAACT CATCGTCAGA 7580 | |||||||||| |||||| ||| |||||||||| |||| ||| | .......... .........G TTGAGCTTGC ACATGGCGGG CGTGGTAACT CATCATCA-A 283 TCGTTATAAT AGTGGCAATA ATAGTGGCCA TAATGGTGGT CGTAATAATC ACAAATTTGG 7520 || || || || | |||| | ||| || ||| | | | || -----ATGAT CGT---TATG GTGGTGG-C- -GGTGGCGGC CGTGGTCANC GTGGTGGAGG 332 AGCGCCCAAA CGTACCGAGT ATCGAGGCAC GTATGTTATT AATGTGCACA TAATTTTCTT 7460 || | | | | ||| | || | |||||| AGTGTCAAGA CGTTCAGATT ATCGAG.... .......... .......... .......... 358 TATTGCATTT CATGCCTTCT TGATCTAATT CACTTACTCA TTTTCAGTTT TAGTTACCGG 7400 | | ||||||| || .......... .......... .......... .......... .......TGT TAGTTACAGG 371 ATTGCCCCAT TCAGCATCCT GGCAGGATCT CAAGGTGAGT GGTGTCTGTG TGGTAAATTA 7340 ||| |||||| |||||||| | |||||||||| |||| ATTACCCCAT TCAGCATCGT GGCAGGATCT CAAG...... .......... .......... 405 TAAGGACCGT GGCTAAAAGT GATCTTCCTT TTCTGGTATC TTCTAGCTTC TGAATATTGG 7280 .......... .......... .......... .......... .......... .......... 405 TATTCTATGT TTCTTATGTA GGATCATATG CGTCGAGCTG GGGATGTTTG TTTCTCACAA 7220 ||||| ||| || || |||| |||||||||| |||||| ||| .......... .......... .GATCACATG CGCCGTGCTG GGGATGTTTG TTTCTCCCAA 444 GTTTTCCGTG AGGGGAGTGG TAAGATAATT TGCAACAGAT ACTAGTTTTA TGCTCCTCTT 7160 |||||||||| | ||||||| GTTTTCCGTG ACGGGAGTG. .......... .......... .......... .......... 463 AATTGTCCCT TTGTTTTGTT TGTATAAGGG TTTGTTTTTA CTATGCCAAA GGAACTTGCC 7100 .......... .......... .......... .......... .......... .......... 463 TATATCAGGA CCTATATTGG TAAATTTGGT AAATTAAGAG TCAAGTCTCT ATAACTACCC 7040 .......... .......... .......... .......... .......... .......... 463 TTTCTCTTTT TTTCCTTTTC CGTCTTTCTG TTGGGTTTTC TTCTTTGAGA AGTGGTTGGA 6980 .......... .......... .......... .......... .......... .......... 463 GAAGGATGGA TATTTGATCC TTTTTTTTGA GAATAGCAAT ATATTTTCTG TGGATAACTT 6920 .......... .......... .......... .......... .......... .......... 463 GAATTTCAAT TGTTTTTATG GCTCTTTAAC TTACTACCTT GAGCTGACTA TCTTTCATAA 6860 .......... .......... .......... .......... .......... .......... 463 TGCAACTAGA AAGGCTTTCT CAAAGTAGAA TCATTTCTTA AATCTTGTGT TGAATGTGAC 6800 .......... .......... .......... .......... .......... .......... 463 TGTGGTTCAT CATTGGGTCT GCAAGTGTCT TTCCCAACCA TATAACAGCT AATATTATCT 6740 .......... .......... .......... .......... .......... .......... 463 TTCAGACCCA ATCAAAACCA AATCTTGTTC TATGGCCCGT GAATAGATGA TATTTTTGGG 6680 .......... .......... .......... .......... .......... .......... 463 CTATTGTTGA GAACAAAATT GCTGTACGCT GCAGTAACGT GCATTAGTTA TATATTTGAT 6620 .......... .......... .......... .......... .......... .......... 463 GACTTCTGGC TTAGTTTATA GTTTATAGTT TATACTATAA TGTTTAGCCA ACTTGGCTGG 6560 .......... .......... .......... .......... .......... .......... 463 ATAAAGTGAC TGCGTCACTC AGTTTGGATG GGATAATGGG TGCTATTACC AATCTTGGTA 6500 .......... .......... .......... .......... .......... .......... 463 AAATGGTCAG GTTTGATATA TTATATATCC TTTGACTGAA GTTTGTCATT GTACATCATC 6440 .......... .......... .......... .......... .......... .......... 463 ATTCAAAACA TAGTTCCATC CGTTTTAGTC AGAAAACTAT TTTTCTCTTC TGGTGCCATA 6380 .......... .......... .......... .......... .......... .......... 463 GTAATATAAT AGAACAAGAA AGAATTACAG AAAGTTAAAA AGTATTAACA TAAAAAAAAA 6320 .......... .......... .......... .......... .......... .......... 463 GTAGATGAAA AATTTGTTGG GGTAACGCAT AAAGTAAAAA AAATAGCAGG GAAAAATAAA 6260 .......... .......... .......... .......... .......... .......... 463 ATGGAGCAGA AAAAGAGAAA GGAGGGAAGT CTAAAAGAAA TCCTTGGTTT GGGGTTGAGG 6200 .......... .......... .......... .......... .......... .......... 463 AAAGACGGTA ATGTTTCAAC CCAGGTGTTG TAGAAGAGTA GATTAATTAT TTTTTGGGGC 6140 .......... .......... .......... .......... .......... .......... 463 ATTTGTTGGA GAGGTAAGTG GGAGCTCTGT TGGACGATGA GGAGAAGATA GCAGGAAATA 6080 .......... .......... .......... .......... .......... .......... 463 AGTGAGCTTA TTTTTTCATC TTCCATGTTG AATAACATCC TGTGCTTACC TGTGTATTCC 6020 .......... .......... .......... .......... .......... .......... 463 TCACTCTTTG AATAAATGTT GATGTGTGTC TGGATGTAAT GCCTGGATTA TGTCCCGCCT 5960 .......... .......... .......... .......... .......... .......... 463 GGTGATAGTG GTCCTCCATA ACAAGATAGT ACTGCTATCT GGCTTATTGC ATGTTACCAA 5900 .......... .......... .......... .......... .......... .......... 463 CCTTGAACAA GCCAAGATAA TGAAGAGGCT AATCTAATAA GTGGGCTTAA CAATGGATAC 5840 .......... .......... .......... .......... .......... .......... 463 ACCAAGAATA GGAGTGGGTC TGGCTCTAAT ATCATACCAT GTTAAGTGGA AAATTTGGGC 5780 .......... .......... .......... .......... .......... .......... 463 CCAACTCAAC TCCAAAAGGT ACCTTAGTGC CAGATCATGC AATAAGATCT CTTTTTCCCT 5720 .......... .......... .......... .......... .......... .......... 463 CTTTCCTTCA TGTTTCAGAT CATGCTAACT CAACTCCAAA AGGTAGCTTA GTGCAAGATC 5660 .......... .......... .......... .......... .......... .......... 463 ATGCAATAAG ATCTCTTTTT ACCTCTTTCC TTTAATGTTT CAGATTATGC AATAAGATAA 5600 .......... .......... .......... .......... .......... .......... 463 CTTTCCTTCT TTCCTTTAAT TGTTTCAGTT AGCTTGCTAT TAGGTTTTAC ATAGAAAATT 5540 .......... .......... .......... .......... .......... .......... 463 GTCATCATTT TTGTCAGGAC AAATATACTA GAGCCTTTAT AATTAAGACA GTTAATAGAC 5480 .......... .......... .......... .......... .......... .......... 463 AGATGGCAAA GATGGTTCGA CTCTAAAATA GGAATTTAAT AGTTGATTTT ACCCTATATA 5420 .......... .......... .......... .......... .......... .......... 463 AATGGAATTG AAAATAGTGA TTGCCACTCA AAATCTAGGG TCAGCTGAGA TTTATTGGAT 5360 .......... .......... .......... .......... .......... .......... 463 ATTTCAATTT TGTGGTTGTG ACTAAAATGG CCCGAATGTA TGGCTGAGCA GTTTAAAGAC 5300 .......... .......... .......... .......... .......... .......... 463 CTGTGGAAAT AATGTGCTTC AGATTTTTTT TATTCTGTAA TCAAATGTGG TGCTGCCTTA 5240 .......... .......... .......... .......... .......... .......... 463 TCTTTGAAAT AATTTCTTGT GCTTCTACTC AATTTTTGTT GTGGCAAGCA CCCTACTCTT 5180 .......... .......... .......... .......... .......... .......... 463 GCTATGACTT GTGAATTTAC TCTCCTTAAG TGATTCTTTT GTGGTGGATG GTGCGCTAAC 5120 .......... .......... .......... .......... .......... .......... 463 AATCAGTTTT GCTCTTCAGG GACCACTGGG ATTGTGGATT ATACCAACTA TGACGACATG 5060 | |||||||| || | |||| |||| ||||| ||| |||||| .......... .........G AACCACTGGT ATAATTGATT ATACAAACTA TGATGACATG 504 AAATATGCTG TAAGCTATCT CCTGTTTCTT ATTCTGTATA ATTATCCTCA ATTTTTGTTC 5000 ||||||||| AAATATGCT. .......... .......... .......... .......... .......... 513 AAGATATTTG AAATATGTTT ATGCTCGACT AACGAGTGTA ATTAATTTTC CTTGTATGTA 4940 .......... .......... .......... .......... .......... .......... 513 GATAAAAAAA CTTGATGAAT CTGAGTTTCG GAATGCTTTT TCTCGT 4894 || ||||| |||||||| | |||||||||| ||||| ||| |||||| .ATCAAAAAG CTTGATGACT CTGAGTTTCG AAATGCCTTT TCTCGT 558 hqPGS_C06HBa0024L21.1-4-_SGN-E315505+ (8419 8324,8236 8171,8073 7999,7620 7494,7412 7366,7258 7201,5100 5051,4938 4894) ******************************************************************************** EST sequence 37 +strand 559 n (File: SGN-E270766+) 1 GATCTTCCCA GGAACAATGA GTCGGTCGAG TAGGACACTT TATGTTGGCA ATCTTCCTGG 61 TGATGTTCGT GAGCGTGAAG TGGAAGATCT CTTTTACAAG TATGGACCGA TTGCACATAT 121 TGAGCTGAAA ATTCCACCAA GACCCCCTGG TTATGCTTTT GTTGAGTTTG AAGAGGCTCG 181 TGATGCTGAA GATGCTATTC GTGGTCGTGA TGGCTATGAT TTTGATGGGC ACCGTCTGCG 241 GGTTGAGCTT GCACATGGCG GGCGTGGTAA CTCATCATCA AATGATCGTT ATGGTGGTGG 301 CGGTGGCGGC CGTGGTCAGC GTGGTGGAGG AGTGTCAAGA CGTTCAGATT ATCGAGTGTT 361 AGTTACAGGA TTACCCCATT CAGCATCGTG GCAGGATCTC AAGGATCACA TGCGCCGTGC 421 TGGGGATGTT TGTTTCTCCC AAGTTTTCCG TGACGGGAGT GGAACCACTG GTATAATTGA 481 TTATACAAAC TATGATGACA TGAAATATGC TATCAAAAAG CTTGATGACT CTGAGTTTCG 541 AAATGCCTTT TCTCGTGCG Predicted gene structure (within gDNA segment 9883 to 4146): Exon 1 8419 8324 ( 96 n); cDNA 5 100 ( 96 n); score: 0.865 Intron 1 8323 8237 ( 87 n); Pd: 1.000 (s: 0.90), Pa: 0.999 (s: 0.92) Exon 2 8236 8171 ( 66 n); cDNA 101 166 ( 66 n); score: 0.939 Intron 2 8170 8074 ( 97 n); Pd: 0.999 (s: 0.96), Pa: 0.998 (s: 0.90) Exon 3 8073 7999 ( 75 n); cDNA 167 241 ( 75 n); score: 0.880 Intron 3 7998 7621 ( 378 n); Pd: 0.996 (s: 0.88), Pa: 0.996 (s: 0.82) Exon 4 7620 7494 ( 127 n); cDNA 242 356 ( 115 n); score: 0.661 Intron 4 7493 7413 ( 81 n); Pd: 0.994 (s: 0.58), Pa: 0.994 (s: 0.91) Exon 5 7412 7366 ( 47 n); cDNA 357 403 ( 47 n); score: 0.915 Intron 5 7365 7259 ( 107 n); Pd: 0.700 (s: 0.91), Pa: 0.998 (s: 0.92) Exon 6 7258 7201 ( 58 n); cDNA 404 461 ( 58 n); score: 0.914 Intron 6 7200 5101 (2100 n); Pd: 0.922 (s: 0.92), Pa: 0.926 (s: 0.86) Exon 7 5100 5051 ( 50 n); cDNA 462 511 ( 50 n); score: 0.860 Intron 7 5050 4939 ( 112 n); Pd: 0.999 (s: 0.86), Pa: 0.959 (s: 0.89) Exon 8 4938 4894 ( 45 n); cDNA 512 556 ( 45 n); score: 0.889 MATCH C06HBa0024L21.1-4- SGN-E270766+ 0.828 564 1.009 C PGS_C06HBa0024L21.1-4-_SGN-E270766+ (8419 8324,8236 8171,8073 7999,7620 7494,7412 7366,7258 7201,5100 5051,4938 4894) Alignment (genomic DNA sequence = upper lines): TTTTTAGGAA CAATGAGTCG TTCAAGTAGG ACGATTTATG TTGGTAATCT TCCTGGTGAT 8360 || ||||| |||||||||| || |||||| || |||||| |||| ||||| |||||||||| TTCCCAGGAA CAATGAGTCG GTCGAGTAGG ACACTTTATG TTGGCAATCT TCCTGGTGAT 64 ATTCGTGAGC GAGAAGTGGA GGATCTGTTC TACAAGGTAC TTGTATAACA CTTAGCTTCA 8300 ||||||||| | |||||||| ||||| || |||||| GTTCGTGAGC GTGAAGTGGA AGATCTCTTT TACAAG.... .......... .......... 100 TACTTTAGTT GGATGTCATT TACTATGCTC ATAAACTTAA ATGTGTGTGG CGTATAATTG 8240 .......... .......... .......... .......... .......... .......... 100 TAGTATGGCC CGATAGCACA TATTGATCTG AAAATTCCAC CAAGACCCCC AGGTTATGCT 8180 ||||| | |||| ||||| |||||| ||| |||||||||| |||||||||| ||||||||| ...TATGGAC CGATTGCACA TATTGAGCTG AAAATTCCAC CAAGACCCCC TGGTTATGCT 157 TTTGTTGAGG TAAGTTTTGA CTGCATTGGC TAAAATGAAT TTCATTGGAT ATTTCCTTCT 8120 ||||||||| TTTGTTGAG. .......... .......... .......... .......... .......... 166 CAATTGTTAA CCTATTTTGA CATTGTTTTG TTGGAACTAA ACACAGTTTG AAGAGGCACG 8060 |||| ||||||| || .......... .......... .......... .......... ......TTTG AAGAGGCTCG 180 CGATGCTGAG GATGCTATTC GTGGGCGCGA TGGCTATGAA TTTGATGGGC ATCGTTTGAG 8000 |||||||| |||||||||| |||| || || ||||||||| |||||||||| | ||| || | TGATGCTGAA GATGCTATTC GTGGTCGTGA TGGCTATGAT TTTGATGGGC ACCGTCTGCG 240 GGTTAGTAAA ATCTTAACAG CATATAGGAT ACACACACAT GAATCAATTG TATCCTCTGT 7940 | G......... .......... .......... .......... .......... .......... 241 TTACTCTGAG AAGTATGATT GACTTGCATT TTTGAATCAG GGTTTCCAAT TCTTGTATTA 7880 .......... .......... .......... .......... .......... .......... 241 ATTGCATTTC GTTGACCCTA GCATTTCACC TAAACCATTA TGTTTCTTTA TTAAATGCTT 7820 .......... .......... .......... .......... .......... .......... 241 GTCCCAAATT AGTTGGGATC AGTTTTATAA ATTGTCTGTA ACCATCCTAC TTTATCCAGG 7760 .......... .......... .......... .......... .......... .......... 241 CGTATTTTTC TTTTCAAGCT TAGTTTGTCT TTCAAGGCAA ATTAACATGT CTAATACATA 7700 .......... .......... .......... .......... .......... .......... 241 TAAGACACCT AAATGCTAAA TAGTTTTCTT TTTGAGGTGC TTAAGATCTA AGCCTACTGA 7640 .......... .......... .......... .......... .......... .......... 241 AACTGTTACA TGTATGCAGG TTGAGCTTGC ACATGGTGGG CGTGGTAACT CATCGTCAGA 7580 | |||||||||| |||||| ||| |||||||||| |||| ||| | .......... .........G TTGAGCTTGC ACATGGCGGG CGTGGTAACT CATCATCA-A 281 TCGTTATAAT AGTGGCAATA ATAGTGGCCA TAATGGTGGT CGTAATAATC ACAAATTTGG 7520 || || || || | |||| | ||| || ||| | | | || -----ATGAT CGT---TATG GTGGTGG-C- -GGTGGCGGC CGTGGTCAGC GTGGTGGAGG 330 AGCGCCCAAA CGTACCGAGT ATCGAGGCAC GTATGTTATT AATGTGCACA TAATTTTCTT 7460 || | | | | ||| | || | |||||| AGTGTCAAGA CGTTCAGATT ATCGAG.... .......... .......... .......... 356 TATTGCATTT CATGCCTTCT TGATCTAATT CACTTACTCA TTTTCAGTTT TAGTTACCGG 7400 | | ||||||| || .......... .......... .......... .......... .......TGT TAGTTACAGG 369 ATTGCCCCAT TCAGCATCCT GGCAGGATCT CAAGGTGAGT GGTGTCTGTG TGGTAAATTA 7340 ||| |||||| |||||||| | |||||||||| |||| ATTACCCCAT TCAGCATCGT GGCAGGATCT CAAG...... .......... .......... 403 TAAGGACCGT GGCTAAAAGT GATCTTCCTT TTCTGGTATC TTCTAGCTTC TGAATATTGG 7280 .......... .......... .......... .......... .......... .......... 403 TATTCTATGT TTCTTATGTA GGATCATATG CGTCGAGCTG GGGATGTTTG TTTCTCACAA 7220 ||||| ||| || || |||| |||||||||| |||||| ||| .......... .......... .GATCACATG CGCCGTGCTG GGGATGTTTG TTTCTCCCAA 442 GTTTTCCGTG AGGGGAGTGG TAAGATAATT TGCAACAGAT ACTAGTTTTA TGCTCCTCTT 7160 |||||||||| | ||||||| GTTTTCCGTG ACGGGAGTG. .......... .......... .......... .......... 461 AATTGTCCCT TTGTTTTGTT TGTATAAGGG TTTGTTTTTA CTATGCCAAA GGAACTTGCC 7100 .......... .......... .......... .......... .......... .......... 461 TATATCAGGA CCTATATTGG TAAATTTGGT AAATTAAGAG TCAAGTCTCT ATAACTACCC 7040 .......... .......... .......... .......... .......... .......... 461 TTTCTCTTTT TTTCCTTTTC CGTCTTTCTG TTGGGTTTTC TTCTTTGAGA AGTGGTTGGA 6980 .......... .......... .......... .......... .......... .......... 461 GAAGGATGGA TATTTGATCC TTTTTTTTGA GAATAGCAAT ATATTTTCTG TGGATAACTT 6920 .......... .......... .......... .......... .......... .......... 461 GAATTTCAAT TGTTTTTATG GCTCTTTAAC TTACTACCTT GAGCTGACTA TCTTTCATAA 6860 .......... .......... .......... .......... .......... .......... 461 TGCAACTAGA AAGGCTTTCT CAAAGTAGAA TCATTTCTTA AATCTTGTGT TGAATGTGAC 6800 .......... .......... .......... .......... .......... .......... 461 TGTGGTTCAT CATTGGGTCT GCAAGTGTCT TTCCCAACCA TATAACAGCT AATATTATCT 6740 .......... .......... .......... .......... .......... .......... 461 TTCAGACCCA ATCAAAACCA AATCTTGTTC TATGGCCCGT GAATAGATGA TATTTTTGGG 6680 .......... .......... .......... .......... .......... .......... 461 CTATTGTTGA GAACAAAATT GCTGTACGCT GCAGTAACGT GCATTAGTTA TATATTTGAT 6620 .......... .......... .......... .......... .......... .......... 461 GACTTCTGGC TTAGTTTATA GTTTATAGTT TATACTATAA TGTTTAGCCA ACTTGGCTGG 6560 .......... .......... .......... .......... .......... .......... 461 ATAAAGTGAC TGCGTCACTC AGTTTGGATG GGATAATGGG TGCTATTACC AATCTTGGTA 6500 .......... .......... .......... .......... .......... .......... 461 AAATGGTCAG GTTTGATATA TTATATATCC TTTGACTGAA GTTTGTCATT GTACATCATC 6440 .......... .......... .......... .......... .......... .......... 461 ATTCAAAACA TAGTTCCATC CGTTTTAGTC AGAAAACTAT TTTTCTCTTC TGGTGCCATA 6380 .......... .......... .......... .......... .......... .......... 461 GTAATATAAT AGAACAAGAA AGAATTACAG AAAGTTAAAA AGTATTAACA TAAAAAAAAA 6320 .......... .......... .......... .......... .......... .......... 461 GTAGATGAAA AATTTGTTGG GGTAACGCAT AAAGTAAAAA AAATAGCAGG GAAAAATAAA 6260 .......... .......... .......... .......... .......... .......... 461 ATGGAGCAGA AAAAGAGAAA GGAGGGAAGT CTAAAAGAAA TCCTTGGTTT GGGGTTGAGG 6200 .......... .......... .......... .......... .......... .......... 461 AAAGACGGTA ATGTTTCAAC CCAGGTGTTG TAGAAGAGTA GATTAATTAT TTTTTGGGGC 6140 .......... .......... .......... .......... .......... .......... 461 ATTTGTTGGA GAGGTAAGTG GGAGCTCTGT TGGACGATGA GGAGAAGATA GCAGGAAATA 6080 .......... .......... .......... .......... .......... .......... 461 AGTGAGCTTA TTTTTTCATC TTCCATGTTG AATAACATCC TGTGCTTACC TGTGTATTCC 6020 .......... .......... .......... .......... .......... .......... 461 TCACTCTTTG AATAAATGTT GATGTGTGTC TGGATGTAAT GCCTGGATTA TGTCCCGCCT 5960 .......... .......... .......... .......... .......... .......... 461 GGTGATAGTG GTCCTCCATA ACAAGATAGT ACTGCTATCT GGCTTATTGC ATGTTACCAA 5900 .......... .......... .......... .......... .......... .......... 461 CCTTGAACAA GCCAAGATAA TGAAGAGGCT AATCTAATAA GTGGGCTTAA CAATGGATAC 5840 .......... .......... .......... .......... .......... .......... 461 ACCAAGAATA GGAGTGGGTC TGGCTCTAAT ATCATACCAT GTTAAGTGGA AAATTTGGGC 5780 .......... .......... .......... .......... .......... .......... 461 CCAACTCAAC TCCAAAAGGT ACCTTAGTGC CAGATCATGC AATAAGATCT CTTTTTCCCT 5720 .......... .......... .......... .......... .......... .......... 461 CTTTCCTTCA TGTTTCAGAT CATGCTAACT CAACTCCAAA AGGTAGCTTA GTGCAAGATC 5660 .......... .......... .......... .......... .......... .......... 461 ATGCAATAAG ATCTCTTTTT ACCTCTTTCC TTTAATGTTT CAGATTATGC AATAAGATAA 5600 .......... .......... .......... .......... .......... .......... 461 CTTTCCTTCT TTCCTTTAAT TGTTTCAGTT AGCTTGCTAT TAGGTTTTAC ATAGAAAATT 5540 .......... .......... .......... .......... .......... .......... 461 GTCATCATTT TTGTCAGGAC AAATATACTA GAGCCTTTAT AATTAAGACA GTTAATAGAC 5480 .......... .......... .......... .......... .......... .......... 461 AGATGGCAAA GATGGTTCGA CTCTAAAATA GGAATTTAAT AGTTGATTTT ACCCTATATA 5420 .......... .......... .......... .......... .......... .......... 461 AATGGAATTG AAAATAGTGA TTGCCACTCA AAATCTAGGG TCAGCTGAGA TTTATTGGAT 5360 .......... .......... .......... .......... .......... .......... 461 ATTTCAATTT TGTGGTTGTG ACTAAAATGG CCCGAATGTA TGGCTGAGCA GTTTAAAGAC 5300 .......... .......... .......... .......... .......... .......... 461 CTGTGGAAAT AATGTGCTTC AGATTTTTTT TATTCTGTAA TCAAATGTGG TGCTGCCTTA 5240 .......... .......... .......... .......... .......... .......... 461 TCTTTGAAAT AATTTCTTGT GCTTCTACTC AATTTTTGTT GTGGCAAGCA CCCTACTCTT 5180 .......... .......... .......... .......... .......... .......... 461 GCTATGACTT GTGAATTTAC TCTCCTTAAG TGATTCTTTT GTGGTGGATG GTGCGCTAAC 5120 .......... .......... .......... .......... .......... .......... 461 AATCAGTTTT GCTCTTCAGG GACCACTGGG ATTGTGGATT ATACCAACTA TGACGACATG 5060 | |||||||| || | |||| |||| ||||| ||| |||||| .......... .........G AACCACTGGT ATAATTGATT ATACAAACTA TGATGACATG 502 AAATATGCTG TAAGCTATCT CCTGTTTCTT ATTCTGTATA ATTATCCTCA ATTTTTGTTC 5000 ||||||||| AAATATGCT. .......... .......... .......... .......... .......... 511 AAGATATTTG AAATATGTTT ATGCTCGACT AACGAGTGTA ATTAATTTTC CTTGTATGTA 4940 .......... .......... .......... .......... .......... .......... 511 GATAAAAAAA CTTGATGAAT CTGAGTTTCG GAATGCTTTT TCTCGT 4894 || ||||| |||||||| | |||||||||| ||||| ||| |||||| .ATCAAAAAG CTTGATGACT CTGAGTTTCG AAATGCCTTT TCTCGT 556 hqPGS_C06HBa0024L21.1-4-_SGN-E270766+ (8419 8324,8236 8171,8073 7999,7620 7494,7412 7366,7258 7201,5100 5051,4938 4894) ******************************************************************************** EST sequence 32 +strand 561 n (File: SGN-E273178+) 1 GAGGCTTCCC AGGAACCAAT GAGTCGGTCG AGTAGGACAC CTTTATGTTG GCAATCTTCC 61 TGGTGATGTT CGTGAGCCGT GAAGTGGAAG ATCTCTTTTA CAAGTATGGA CCGATTGCAC 121 ATATTGAGCT GAAAATTCCA CCAAGACCCC CTGGTTATGC TTTTGTTGAG TTTGAAGAGG 181 CTCGTGATGC TGAAGATGCT ATTCGTGGTC GTGATGGCTA TGATTTTGAT GGGCACCGTC 241 TGCGGGTTGA GCTTGCACAT GGCGGGCGTG GTAACTCATC ATCAAATGAT CGTTATGGTG 301 GTGGCGGTGG CGGCCGTGGT CAGCGTGGTG GAGGAGTGTC AAGACGTTCA GATTATCGAG 361 TGTTAGTTAC AGGATTACCC CATTCAGCAT CGTGGCAGGA TCTCAAGGAT CACATGCGCC 421 GTGCTGGGGA TGTTTGTTTC TCCCAAGTTT TCCGTGACGG GAGTGGAACC ACTGGTATAA 481 TTGATTATAC AAACTATGAT GACATGAAAT ATGCTATCAA AAAGCTTGAT GACTCTGAGT 541 TTCGAAATGC CTTTTCTCGT G Predicted gene structure (within gDNA segment 9883 to 4166): Exon 1 8409 8324 ( 86 n); cDNA 17 104 ( 88 n); score: 0.826 Intron 1 8323 8237 ( 87 n); Pd: 1.000 (s: 0.85), Pa: 0.999 (s: 0.92) Exon 2 8236 8171 ( 66 n); cDNA 105 170 ( 66 n); score: 0.939 Intron 2 8170 8074 ( 97 n); Pd: 0.999 (s: 0.96), Pa: 0.998 (s: 0.90) Exon 3 8073 7999 ( 75 n); cDNA 171 245 ( 75 n); score: 0.880 Intron 3 7998 7621 ( 378 n); Pd: 0.996 (s: 0.88), Pa: 0.996 (s: 0.82) Exon 4 7620 7494 ( 127 n); cDNA 246 360 ( 115 n); score: 0.661 Intron 4 7493 7413 ( 81 n); Pd: 0.994 (s: 0.58), Pa: 0.994 (s: 0.91) Exon 5 7412 7366 ( 47 n); cDNA 361 407 ( 47 n); score: 0.915 Intron 5 7365 7259 ( 107 n); Pd: 0.700 (s: 0.91), Pa: 0.998 (s: 0.92) Exon 6 7258 7201 ( 58 n); cDNA 408 465 ( 58 n); score: 0.914 Intron 6 7200 5101 (2100 n); Pd: 0.922 (s: 0.92), Pa: 0.926 (s: 0.86) Exon 7 5100 5051 ( 50 n); cDNA 466 515 ( 50 n); score: 0.860 Intron 7 5050 4939 ( 112 n); Pd: 0.999 (s: 0.86), Pa: 0.959 (s: 0.89) Exon 8 4938 4894 ( 45 n); cDNA 516 560 ( 45 n); score: 0.889 MATCH C06HBa0024L21.1-4- SGN-E273178+ 0.820 554 0.988 C PGS_C06HBa0024L21.1-4-_SGN-E273178+ (8409 8324,8236 8171,8073 7999,7620 7494,7412 7366,7258 7201,5100 5051,4938 4894) Alignment (genomic DNA sequence = upper lines): CAATGAGTCG TTCAAGTAGG AC-GATTTAT GTTGGTAATC TTCCTGGTGA TATTCGTGAG 8351 |||||||||| || |||||| || ||||| ||||| |||| |||||||||| | |||||||| CAATGAGTCG GTCGAGTAGG ACACCTTTAT GTTGGCAATC TTCCTGGTGA TGTTCGTGAG 76 -CGAGAAGTG GAGGATCTGT TCTACAAGGT ACTTGTATAA CACTTAGCTT CATACTTTAG 8292 || |||||| || ||||| | | |||||| CCGTGAAGTG GAAGATCTCT TTTACAAG.. .......... .......... .......... 104 TTGGATGTCA TTTACTATGC TCATAAACTT AAATGTGTGT GGCGTATAAT TGTAGTATGG 8232 ||||| .......... .......... .......... .......... .......... .....TATGG 109 CCCGATAGCA CATATTGATC TGAAAATTCC ACCAAGACCC CCAGGTTATG CTTTTGTTGA 8172 ||||| ||| |||||||| | |||||||||| |||||||||| || ||||||| |||||||||| ACCGATTGCA CATATTGAGC TGAAAATTCC ACCAAGACCC CCTGGTTATG CTTTTGTTGA 169 GGTAAGTTTT GACTGCATTG GCTAAAATGA ATTTCATTGG ATATTTCCTT CTCAATTGTT 8112 | G......... .......... .......... .......... .......... .......... 170 AACCTATTTT GACATTGTTT TGTTGGAACT AAACACAGTT TGAAGAGGCA CGCGATGCTG 8052 || ||||||||| || ||||||| .......... .......... .......... ........TT TGAAGAGGCT CGTGATGCTG 192 AGGATGCTAT TCGTGGGCGC GATGGCTATG AATTTGATGG GCATCGTTTG AGGGTTAGTA 7992 | |||||||| |||||| || |||||||||| | |||||||| ||| ||| || || AAGATGCTAT TCGTGGTCGT GATGGCTATG ATTTTGATGG GCACCGTCTG CGG....... 245 AAATCTTAAC AGCATATAGG ATACACACAC ATGAATCAAT TGTATCCTCT GTTTACTCTG 7932 .......... .......... .......... .......... .......... .......... 245 AGAAGTATGA TTGACTTGCA TTTTTGAATC AGGGTTTCCA ATTCTTGTAT TAATTGCATT 7872 .......... .......... .......... .......... .......... .......... 245 TCGTTGACCC TAGCATTTCA CCTAAACCAT TATGTTTCTT TATTAAATGC TTGTCCCAAA 7812 .......... .......... .......... .......... .......... .......... 245 TTAGTTGGGA TCAGTTTTAT AAATTGTCTG TAACCATCCT ACTTTATCCA GGCGTATTTT 7752 .......... .......... .......... .......... .......... .......... 245 TCTTTTCAAG CTTAGTTTGT CTTTCAAGGC AAATTAACAT GTCTAATACA TATAAGACAC 7692 .......... .......... .......... .......... .......... .......... 245 CTAAATGCTA AATAGTTTTC TTTTTGAGGT GCTTAAGATC TAAGCCTACT GAAACTGTTA 7632 .......... .......... .......... .......... .......... .......... 245 CATGTATGCA GGTTGAGCTT GCACATGGTG GGCGTGGTAA CTCATCGTCA GATCGTTATA 7572 ||||||||| |||||||| | |||||||||| |||||| ||| | || .......... .GTTGAGCTT GCACATGGCG GGCGTGGTAA CTCATCATCA -A-----ATG 288 ATAGTGGCAA TAATAGTGGC CATAATGGTG GTCGTAATAA TCACAAATTT GGAGCGCCCA 7512 || || | | | |||| | ||| | | ||| | | | |||| | | | ATCGT---TA TGGTGGTGG- C--GGTGGCG GCCGTGGTCA GCGTGGTGGA GGAGTGTCAA 342 AACGTACCGA GTATCGAGGC ACGTATGTTA TTAATGTGCA CATAATTTTC TTTATTGCAT 7452 |||| | || ||||||| GACGTTCAGA TTATCGAG.. .......... .......... .......... .......... 360 TTCATGCCTT CTTGATCTAA TTCACTTACT CATTTTCAGT TTTAGTTACC GGATTGCCCC 7392 | |||||||| ||||| |||| .......... .......... .......... .........T GTTAGTTACA GGATTACCCC 381 ATTCAGCATC CTGGCAGGAT CTCAAGGTGA GTGGTGTCTG TGTGGTAAAT TATAAGGACC 7332 |||||||||| ||||||||| |||||| ATTCAGCATC GTGGCAGGAT CTCAAG.... .......... .......... .......... 407 GTGGCTAAAA GTGATCTTCC TTTTCTGGTA TCTTCTAGCT TCTGAATATT GGTATTCTAT 7272 .......... .......... .......... .......... .......... .......... 407 GTTTCTTATG TAGGATCATA TGCGTCGAGC TGGGGATGTT TGTTTCTCAC AAGTTTTCCG 7212 ||||| | |||| || || |||||||||| |||||||| | |||||||||| .......... ...GATCACA TGCGCCGTGC TGGGGATGTT TGTTTCTCCC AAGTTTTCCG 454 TGAGGGGAGT GGTAAGATAA TTTGCAACAG ATACTAGTTT TATGCTCCTC TTAATTGTCC 7152 ||| |||||| | TGACGGGAGT G......... .......... .......... .......... .......... 465 CTTTGTTTTG TTTGTATAAG GGTTTGTTTT TACTATGCCA AAGGAACTTG CCTATATCAG 7092 .......... .......... .......... .......... .......... .......... 465 GACCTATATT GGTAAATTTG GTAAATTAAG AGTCAAGTCT CTATAACTAC CCTTTCTCTT 7032 .......... .......... .......... .......... .......... .......... 465 TTTTTCCTTT TCCGTCTTTC TGTTGGGTTT TCTTCTTTGA GAAGTGGTTG GAGAAGGATG 6972 .......... .......... .......... .......... .......... .......... 465 GATATTTGAT CCTTTTTTTT GAGAATAGCA ATATATTTTC TGTGGATAAC TTGAATTTCA 6912 .......... .......... .......... .......... .......... .......... 465 ATTGTTTTTA TGGCTCTTTA ACTTACTACC TTGAGCTGAC TATCTTTCAT AATGCAACTA 6852 .......... .......... .......... .......... .......... .......... 465 GAAAGGCTTT CTCAAAGTAG AATCATTTCT TAAATCTTGT GTTGAATGTG ACTGTGGTTC 6792 .......... .......... .......... .......... .......... .......... 465 ATCATTGGGT CTGCAAGTGT CTTTCCCAAC CATATAACAG CTAATATTAT CTTTCAGACC 6732 .......... .......... .......... .......... .......... .......... 465 CAATCAAAAC CAAATCTTGT TCTATGGCCC GTGAATAGAT GATATTTTTG GGCTATTGTT 6672 .......... .......... .......... .......... .......... .......... 465 GAGAACAAAA TTGCTGTACG CTGCAGTAAC GTGCATTAGT TATATATTTG ATGACTTCTG 6612 .......... .......... .......... .......... .......... .......... 465 GCTTAGTTTA TAGTTTATAG TTTATACTAT AATGTTTAGC CAACTTGGCT GGATAAAGTG 6552 .......... .......... .......... .......... .......... .......... 465 ACTGCGTCAC TCAGTTTGGA TGGGATAATG GGTGCTATTA CCAATCTTGG TAAAATGGTC 6492 .......... .......... .......... .......... .......... .......... 465 AGGTTTGATA TATTATATAT CCTTTGACTG AAGTTTGTCA TTGTACATCA TCATTCAAAA 6432 .......... .......... .......... .......... .......... .......... 465 CATAGTTCCA TCCGTTTTAG TCAGAAAACT ATTTTTCTCT TCTGGTGCCA TAGTAATATA 6372 .......... .......... .......... .......... .......... .......... 465 ATAGAACAAG AAAGAATTAC AGAAAGTTAA AAAGTATTAA CATAAAAAAA AAGTAGATGA 6312 .......... .......... .......... .......... .......... .......... 465 AAAATTTGTT GGGGTAACGC ATAAAGTAAA AAAAATAGCA GGGAAAAATA AAATGGAGCA 6252 .......... .......... .......... .......... .......... .......... 465 GAAAAAGAGA AAGGAGGGAA GTCTAAAAGA AATCCTTGGT TTGGGGTTGA GGAAAGACGG 6192 .......... .......... .......... .......... .......... .......... 465 TAATGTTTCA ACCCAGGTGT TGTAGAAGAG TAGATTAATT ATTTTTTGGG GCATTTGTTG 6132 .......... .......... .......... .......... .......... .......... 465 GAGAGGTAAG TGGGAGCTCT GTTGGACGAT GAGGAGAAGA TAGCAGGAAA TAAGTGAGCT 6072 .......... .......... .......... .......... .......... .......... 465 TATTTTTTCA TCTTCCATGT TGAATAACAT CCTGTGCTTA CCTGTGTATT CCTCACTCTT 6012 .......... .......... .......... .......... .......... .......... 465 TGAATAAATG TTGATGTGTG TCTGGATGTA ATGCCTGGAT TATGTCCCGC CTGGTGATAG 5952 .......... .......... .......... .......... .......... .......... 465 TGGTCCTCCA TAACAAGATA GTACTGCTAT CTGGCTTATT GCATGTTACC AACCTTGAAC 5892 .......... .......... .......... .......... .......... .......... 465 AAGCCAAGAT AATGAAGAGG CTAATCTAAT AAGTGGGCTT AACAATGGAT ACACCAAGAA 5832 .......... .......... .......... .......... .......... .......... 465 TAGGAGTGGG TCTGGCTCTA ATATCATACC ATGTTAAGTG GAAAATTTGG GCCCAACTCA 5772 .......... .......... .......... .......... .......... .......... 465 ACTCCAAAAG GTACCTTAGT GCCAGATCAT GCAATAAGAT CTCTTTTTCC CTCTTTCCTT 5712 .......... .......... .......... .......... .......... .......... 465 CATGTTTCAG ATCATGCTAA CTCAACTCCA AAAGGTAGCT TAGTGCAAGA TCATGCAATA 5652 .......... .......... .......... .......... .......... .......... 465 AGATCTCTTT TTACCTCTTT CCTTTAATGT TTCAGATTAT GCAATAAGAT AACTTTCCTT 5592 .......... .......... .......... .......... .......... .......... 465 CTTTCCTTTA ATTGTTTCAG TTAGCTTGCT ATTAGGTTTT ACATAGAAAA TTGTCATCAT 5532 .......... .......... .......... .......... .......... .......... 465 TTTTGTCAGG ACAAATATAC TAGAGCCTTT ATAATTAAGA CAGTTAATAG ACAGATGGCA 5472 .......... .......... .......... .......... .......... .......... 465 AAGATGGTTC GACTCTAAAA TAGGAATTTA ATAGTTGATT TTACCCTATA TAAATGGAAT 5412 .......... .......... .......... .......... .......... .......... 465 TGAAAATAGT GATTGCCACT CAAAATCTAG GGTCAGCTGA GATTTATTGG ATATTTCAAT 5352 .......... .......... .......... .......... .......... .......... 465 TTTGTGGTTG TGACTAAAAT GGCCCGAATG TATGGCTGAG CAGTTTAAAG ACCTGTGGAA 5292 .......... .......... .......... .......... .......... .......... 465 ATAATGTGCT TCAGATTTTT TTTATTCTGT AATCAAATGT GGTGCTGCCT TATCTTTGAA 5232 .......... .......... .......... .......... .......... .......... 465 ATAATTTCTT GTGCTTCTAC TCAATTTTTG TTGTGGCAAG CACCCTACTC TTGCTATGAC 5172 .......... .......... .......... .......... .......... .......... 465 TTGTGAATTT ACTCTCCTTA AGTGATTCTT TTGTGGTGGA TGGTGCGCTA ACAATCAGTT 5112 .......... .......... .......... .......... .......... .......... 465 TTGCTCTTCA GGGACCACTG GGATTGTGGA TTATACCAAC TATGACGACA TGAAATATGC 5052 | ||||||| | || | || |||||| ||| ||||| |||| |||||||||| .......... .GAACCACTG GTATAATTGA TTATACAAAC TATGATGACA TGAAATATGC 514 TGTAAGCTAT CTCCTGTTTC TTATTCTGTA TAATTATCCT CAATTTTTGT TCAAGATATT 4992 | T......... .......... .......... .......... .......... .......... 515 TGAAATATGT TTATGCTCGA CTAACGAGTG TAATTAATTT TCCTTGTATG TAGATAAAAA 4932 || |||| .......... .......... .......... .......... .......... ...ATCAAAA 522 AACTTGATGA ATCTGAGTTT CGGAATGCTT TTTCTCGT 4894 | |||||||| ||||||||| || ||||| | |||||||| AGCTTGATGA CTCTGAGTTT CGAAATGCCT TTTCTCGT 560 hqPGS_C06HBa0024L21.1-4-_SGN-E273178+ (8409 8324,8236 8171,8073 7999,7620 7494,7412 7366,7258 7201,5100 5051,4938 4894) ******************************************************************************** EST sequence 26 +strand 601 n (File: SGN-E314227+) 1 AATTCTCCTT CTCTAAGCGC TCTGTGTTTT CATCCTTCAT CAATCTTCTA GTAAAGGAAC 61 AATGAGTCGT TCAAGTAGGA CGATTTATGT TGGTAATCTT CCTGGTGATA TTCGTGAGCG 121 AGAAGTGGAG GATCTGTTCT ACAAGTATGG CCCGATAGCA CATATTGATC TGAAAATTCC 181 ACCAAGACCC CCAGGTTATG CTTTTGTTGA GTTTGAAGAG GCACGCGATG CTGAGGATGC 241 TATTCGTGGG CGCGATGGCT ATGAATTTGA TGGGCATCGT TTGAGGGTTG AGCTTGCACA 301 TGGTGGGCGT GGTAACTCAT CGTCAGATCG TTATAATAGT GGCAATAATA GTGGCCATAA 361 TGGTGGTCGT AATAATCACA AATTTGGAGC GCCCAAACGT ACCGAGTATC GAGTTTTAGT 421 TACCGGATTG CCCCATTCAG CATCCTGGCA GGATCTCAAG GATCATATGC GTCGAGCTGG 481 GGATGTTTGT TTCTCACAAG TTTTCCGTGA GGGGAGTGGG ACCACTGGGA TTGTGGATTA 541 TACCAACTAT GACGACATGA AATATGCTAT AAAAAAACTT GATGAATCTG AGTTTCGGAA 601 T Predicted gene structure (within gDNA segment 9853 to 4296): Exon 1 9253 9198 ( 56 n); cDNA 1 56 ( 56 n); score: 1.000 Intron 1 9197 8413 ( 785 n); Pd: 0.980 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 2 8412 8324 ( 89 n); cDNA 57 145 ( 89 n); score: 1.000 Intron 2 8323 8237 ( 87 n); Pd: 1.000 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 3 8236 8171 ( 66 n); cDNA 146 211 ( 66 n); score: 1.000 Intron 3 8170 8074 ( 97 n); Pd: 0.999 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 4 8073 7999 ( 75 n); cDNA 212 286 ( 75 n); score: 1.000 Intron 4 7998 7621 ( 378 n); Pd: 0.996 (s: 1.00), Pa: 0.996 (s: 1.00) Exon 5 7620 7494 ( 127 n); cDNA 287 413 ( 127 n); score: 1.000 Intron 5 7493 7413 ( 81 n); Pd: 0.994 (s: 1.00), Pa: 0.994 (s: 1.00) Exon 6 7412 7366 ( 47 n); cDNA 414 460 ( 47 n); score: 1.000 Intron 6 7365 7259 ( 107 n); Pd: 0.700 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 7 7258 7201 ( 58 n); cDNA 461 518 ( 58 n); score: 1.000 Intron 7 7200 5101 (2100 n); Pd: 0.922 (s: 1.00), Pa: 0.926 (s: 1.00) Exon 8 5100 5051 ( 50 n); cDNA 519 568 ( 50 n); score: 1.000 Intron 8 5050 4939 ( 112 n); Pd: 0.999 (s: 1.00), Pa: 0.959 (s: 0) Exon 9 4938 4906 ( 33 n); cDNA 569 601 ( 33 n); score: 1.000 MATCH C06HBa0024L21.1-4- SGN-E314227+ 1.000 601 1.000 C PGS_C06HBa0024L21.1-4-_SGN-E314227+ (9253 9198,8412 8324,8236 8171,8073 7999,7620 7494,7412 7366,7258 7201,5100 5051,4938 4906) Alignment (genomic DNA sequence = upper lines): AATTCTCCTT CTCTAAGCGC TCTGTGTTTT CATCCTTCAT CAATCTTCTA GTAAAGGTAC 9194 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||| AATTCTCCTT CTCTAAGCGC TCTGTGTTTT CATCCTTCAT CAATCTTCTA GTAAAG.... 56 GTTCCTTCGG TCTTTGTTAA TGGAGGTCCG TTTAATCGGC ATCTATCAAA CGAAATAGCT 9134 .......... .......... .......... .......... .......... .......... 56 AACAAGATCT GTTTTTTAAT TTTAGTTTCT TCCGTTTTGC TCATTTTACC CAGCGAAAAA 9074 .......... .......... .......... .......... .......... .......... 56 TGTATTTCAA TTCACTTAAA ACGTTGTTCA GAGGCGGATC TAGCATAGAA TCAGTCTACA 9014 .......... .......... .......... .......... .......... .......... 56 TACAGGAAAA ATAGCAATAA AGTATCTATA CATAATTTGT GTATGTAATT GTGTATCCAT 8954 .......... .......... .......... .......... .......... .......... 56 TATTAGTGTG TTCTGTATGC AGGAAATGTT TTTTTTCGTC TTGGAAAATA ACCGGGTTTC 8894 .......... .......... .......... .......... .......... .......... 56 TTACTTAGTT GTGTTCGGTA GGCAAGCGAA AAATATTAGT ACAATTATTT GTATGTAATC 8834 .......... .......... .......... .......... .......... .......... 56 TAGACAAATA CTCTTGAGTT GGGTGGTGGG GATGGTGGCT AAGAGTGTGG TGGTGAAGAT 8774 .......... .......... .......... .......... .......... .......... 56 GAGGTTGGTT GGAGGGTGGG GAGAACACAA TCAATGTGGA ATTTTATTTG TTGAACCTGT 8714 .......... .......... .......... .......... .......... .......... 56 TTTCACTACT TCCATTGAGG AAGTCAAATT TTTTTATTTT GAAGCAACTT AATTTCCTAG 8654 .......... .......... .......... .......... .......... .......... 56 AGAAGATGTT TTCCATAAAT TTTACCAACC ATGAGAAAAC TTGGAAACAT TTTTCTGGAA 8594 .......... .......... .......... .......... .......... .......... 56 AATGGTTTCA TTCGTATCTA ACACACCCTA TATGTATGTT TGTTACTTTG TTTATGTATT 8534 .......... .......... .......... .......... .......... .......... 56 TGTGTGCGAA TCAAGTTGAT TGCTCAAGTT GTGTTTTTGT GACTTAAGTT CTTCATGAAT 8474 .......... .......... .......... .......... .......... .......... 56 TTTATCCATT TTTGTTTCTC AGGTGGGTTT TGATTGTATT TTTTTGTTGA ATTATTTTTA 8414 .......... .......... .......... .......... .......... .......... 56 GGAACAATGA GTCGTTCAAG TAGGACGATT TATGTTGGTA ATCTTCCTGG TGATATTCGT 8354 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .GAACAATGA GTCGTTCAAG TAGGACGATT TATGTTGGTA ATCTTCCTGG TGATATTCGT 115 GAGCGAGAAG TGGAGGATCT GTTCTACAAG GTACTTGTAT AACACTTAGC TTCATACTTT 8294 |||||||||| |||||||||| |||||||||| GAGCGAGAAG TGGAGGATCT GTTCTACAAG .......... .......... .......... 145 AGTTGGATGT CATTTACTAT GCTCATAAAC TTAAATGTGT GTGGCGTATA ATTGTAGTAT 8234 ||| .......... .......... .......... .......... .......... .......TAT 148 GGCCCGATAG CACATATTGA TCTGAAAATT CCACCAAGAC CCCCAGGTTA TGCTTTTGTT 8174 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGCCCGATAG CACATATTGA TCTGAAAATT CCACCAAGAC CCCCAGGTTA TGCTTTTGTT 208 GAGGTAAGTT TTGACTGCAT TGGCTAAAAT GAATTTCATT GGATATTTCC TTCTCAATTG 8114 ||| GAG....... .......... .......... .......... .......... .......... 211 TTAACCTATT TTGACATTGT TTTGTTGGAA CTAAACACAG TTTGAAGAGG CACGCGATGC 8054 |||||||||| |||||||||| .......... .......... .......... .......... TTTGAAGAGG CACGCGATGC 231 TGAGGATGCT ATTCGTGGGC GCGATGGCTA TGAATTTGAT GGGCATCGTT TGAGGGTTAG 7994 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||| TGAGGATGCT ATTCGTGGGC GCGATGGCTA TGAATTTGAT GGGCATCGTT TGAGG..... 286 TAAAATCTTA ACAGCATATA GGATACACAC ACATGAATCA ATTGTATCCT CTGTTTACTC 7934 .......... .......... .......... .......... .......... .......... 286 TGAGAAGTAT GATTGACTTG CATTTTTGAA TCAGGGTTTC CAATTCTTGT ATTAATTGCA 7874 .......... .......... .......... .......... .......... .......... 286 TTTCGTTGAC CCTAGCATTT CACCTAAACC ATTATGTTTC TTTATTAAAT GCTTGTCCCA 7814 .......... .......... .......... .......... .......... .......... 286 AATTAGTTGG GATCAGTTTT ATAAATTGTC TGTAACCATC CTACTTTATC CAGGCGTATT 7754 .......... .......... .......... .......... .......... .......... 286 TTTCTTTTCA AGCTTAGTTT GTCTTTCAAG GCAAATTAAC ATGTCTAATA CATATAAGAC 7694 .......... .......... .......... .......... .......... .......... 286 ACCTAAATGC TAAATAGTTT TCTTTTTGAG GTGCTTAAGA TCTAAGCCTA CTGAAACTGT 7634 .......... .......... .......... .......... .......... .......... 286 TACATGTATG CAGGTTGAGC TTGCACATGG TGGGCGTGGT AACTCATCGT CAGATCGTTA 7574 ||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ...GTTGAGC TTGCACATGG TGGGCGTGGT AACTCATCGT CAGATCGTTA 333 TAATAGTGGC AATAATAGTG GCCATAATGG TGGTCGTAAT AATCACAAAT TTGGAGCGCC 7514 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAATAGTGGC AATAATAGTG GCCATAATGG TGGTCGTAAT AATCACAAAT TTGGAGCGCC 393 CAAACGTACC GAGTATCGAG GCACGTATGT TATTAATGTG CACATAATTT TCTTTATTGC 7454 |||||||||| |||||||||| CAAACGTACC GAGTATCGAG .......... .......... .......... .......... 413 ATTTCATGCC TTCTTGATCT AATTCACTTA CTCATTTTCA GTTTTAGTTA CCGGATTGCC 7394 ||||||||| |||||||||| .......... .......... .......... .......... .TTTTAGTTA CCGGATTGCC 432 CCATTCAGCA TCCTGGCAGG ATCTCAAGGT GAGTGGTGTC TGTGTGGTAA ATTATAAGGA 7334 |||||||||| |||||||||| |||||||| CCATTCAGCA TCCTGGCAGG ATCTCAAG.. .......... .......... .......... 460 CCGTGGCTAA AAGTGATCTT CCTTTTCTGG TATCTTCTAG CTTCTGAATA TTGGTATTCT 7274 .......... .......... .......... .......... .......... .......... 460 ATGTTTCTTA TGTAGGATCA TATGCGTCGA GCTGGGGATG TTTGTTTCTC ACAAGTTTTC 7214 ||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... .....GATCA TATGCGTCGA GCTGGGGATG TTTGTTTCTC ACAAGTTTTC 505 CGTGAGGGGA GTGGTAAGAT AATTTGCAAC AGATACTAGT TTTATGCTCC TCTTAATTGT 7154 |||||||||| ||| CGTGAGGGGA GTG....... .......... .......... .......... .......... 518 CCCTTTGTTT TGTTTGTATA AGGGTTTGTT TTTACTATGC CAAAGGAACT TGCCTATATC 7094 .......... .......... .......... .......... .......... .......... 518 AGGACCTATA TTGGTAAATT TGGTAAATTA AGAGTCAAGT CTCTATAACT ACCCTTTCTC 7034 .......... .......... .......... .......... .......... .......... 518 TTTTTTTCCT TTTCCGTCTT TCTGTTGGGT TTTCTTCTTT GAGAAGTGGT TGGAGAAGGA 6974 .......... .......... .......... .......... .......... .......... 518 TGGATATTTG ATCCTTTTTT TTGAGAATAG CAATATATTT TCTGTGGATA ACTTGAATTT 6914 .......... .......... .......... .......... .......... .......... 518 CAATTGTTTT TATGGCTCTT TAACTTACTA CCTTGAGCTG ACTATCTTTC ATAATGCAAC 6854 .......... .......... .......... .......... .......... .......... 518 TAGAAAGGCT TTCTCAAAGT AGAATCATTT CTTAAATCTT GTGTTGAATG TGACTGTGGT 6794 .......... .......... .......... .......... .......... .......... 518 TCATCATTGG GTCTGCAAGT GTCTTTCCCA ACCATATAAC AGCTAATATT ATCTTTCAGA 6734 .......... .......... .......... .......... .......... .......... 518 CCCAATCAAA ACCAAATCTT GTTCTATGGC CCGTGAATAG ATGATATTTT TGGGCTATTG 6674 .......... .......... .......... .......... .......... .......... 518 TTGAGAACAA AATTGCTGTA CGCTGCAGTA ACGTGCATTA GTTATATATT TGATGACTTC 6614 .......... .......... .......... .......... .......... .......... 518 TGGCTTAGTT TATAGTTTAT AGTTTATACT ATAATGTTTA GCCAACTTGG CTGGATAAAG 6554 .......... .......... .......... .......... .......... .......... 518 TGACTGCGTC ACTCAGTTTG GATGGGATAA TGGGTGCTAT TACCAATCTT GGTAAAATGG 6494 .......... .......... .......... .......... .......... .......... 518 TCAGGTTTGA TATATTATAT ATCCTTTGAC TGAAGTTTGT CATTGTACAT CATCATTCAA 6434 .......... .......... .......... .......... .......... .......... 518 AACATAGTTC CATCCGTTTT AGTCAGAAAA CTATTTTTCT CTTCTGGTGC CATAGTAATA 6374 .......... .......... .......... .......... .......... .......... 518 TAATAGAACA AGAAAGAATT ACAGAAAGTT AAAAAGTATT AACATAAAAA AAAAGTAGAT 6314 .......... .......... .......... .......... .......... .......... 518 GAAAAATTTG TTGGGGTAAC GCATAAAGTA AAAAAAATAG CAGGGAAAAA TAAAATGGAG 6254 .......... .......... .......... .......... .......... .......... 518 CAGAAAAAGA GAAAGGAGGG AAGTCTAAAA GAAATCCTTG GTTTGGGGTT GAGGAAAGAC 6194 .......... .......... .......... .......... .......... .......... 518 GGTAATGTTT CAACCCAGGT GTTGTAGAAG AGTAGATTAA TTATTTTTTG GGGCATTTGT 6134 .......... .......... .......... .......... .......... .......... 518 TGGAGAGGTA AGTGGGAGCT CTGTTGGACG ATGAGGAGAA GATAGCAGGA AATAAGTGAG 6074 .......... .......... .......... .......... .......... .......... 518 CTTATTTTTT CATCTTCCAT GTTGAATAAC ATCCTGTGCT TACCTGTGTA TTCCTCACTC 6014 .......... .......... .......... .......... .......... .......... 518 TTTGAATAAA TGTTGATGTG TGTCTGGATG TAATGCCTGG ATTATGTCCC GCCTGGTGAT 5954 .......... .......... .......... .......... .......... .......... 518 AGTGGTCCTC CATAACAAGA TAGTACTGCT ATCTGGCTTA TTGCATGTTA CCAACCTTGA 5894 .......... .......... .......... .......... .......... .......... 518 ACAAGCCAAG ATAATGAAGA GGCTAATCTA ATAAGTGGGC TTAACAATGG ATACACCAAG 5834 .......... .......... .......... .......... .......... .......... 518 AATAGGAGTG GGTCTGGCTC TAATATCATA CCATGTTAAG TGGAAAATTT GGGCCCAACT 5774 .......... .......... .......... .......... .......... .......... 518 CAACTCCAAA AGGTACCTTA GTGCCAGATC ATGCAATAAG ATCTCTTTTT CCCTCTTTCC 5714 .......... .......... .......... .......... .......... .......... 518 TTCATGTTTC AGATCATGCT AACTCAACTC CAAAAGGTAG CTTAGTGCAA GATCATGCAA 5654 .......... .......... .......... .......... .......... .......... 518 TAAGATCTCT TTTTACCTCT TTCCTTTAAT GTTTCAGATT ATGCAATAAG ATAACTTTCC 5594 .......... .......... .......... .......... .......... .......... 518 TTCTTTCCTT TAATTGTTTC AGTTAGCTTG CTATTAGGTT TTACATAGAA AATTGTCATC 5534 .......... .......... .......... .......... .......... .......... 518 ATTTTTGTCA GGACAAATAT ACTAGAGCCT TTATAATTAA GACAGTTAAT AGACAGATGG 5474 .......... .......... .......... .......... .......... .......... 518 CAAAGATGGT TCGACTCTAA AATAGGAATT TAATAGTTGA TTTTACCCTA TATAAATGGA 5414 .......... .......... .......... .......... .......... .......... 518 ATTGAAAATA GTGATTGCCA CTCAAAATCT AGGGTCAGCT GAGATTTATT GGATATTTCA 5354 .......... .......... .......... .......... .......... .......... 518 ATTTTGTGGT TGTGACTAAA ATGGCCCGAA TGTATGGCTG AGCAGTTTAA AGACCTGTGG 5294 .......... .......... .......... .......... .......... .......... 518 AAATAATGTG CTTCAGATTT TTTTTATTCT GTAATCAAAT GTGGTGCTGC CTTATCTTTG 5234 .......... .......... .......... .......... .......... .......... 518 AAATAATTTC TTGTGCTTCT ACTCAATTTT TGTTGTGGCA AGCACCCTAC TCTTGCTATG 5174 .......... .......... .......... .......... .......... .......... 518 ACTTGTGAAT TTACTCTCCT TAAGTGATTC TTTTGTGGTG GATGGTGCGC TAACAATCAG 5114 .......... .......... .......... .......... .......... .......... 518 TTTTGCTCTT CAGGGACCAC TGGGATTGTG GATTATACCA ACTATGACGA CATGAAATAT 5054 ||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ...GGACCAC TGGGATTGTG GATTATACCA ACTATGACGA CATGAAATAT 565 GCTGTAAGCT ATCTCCTGTT TCTTATTCTG TATAATTATC CTCAATTTTT GTTCAAGATA 4994 ||| GCT....... .......... .......... .......... .......... .......... 568 TTTGAAATAT GTTTATGCTC GACTAACGAG TGTAATTAAT TTTCCTTGTA TGTAGATAAA 4934 ||||| .......... .......... .......... .......... .......... .....ATAAA 573 AAAACTTGAT GAATCTGAGT TTCGGAAT 4906 |||||||||| |||||||||| |||||||| AAAACTTGAT GAATCTGAGT TTCGGAAT 601 hqPGS_C06HBa0024L21.1-4-_SGN-E314227+ (9253 9198,8412 8324,8236 8171,8073 7999,7620 7494,7412 7366,7258 7201,5100 5051,4938 4906) ******************************************************************************** EST sequence 33 +strand 539 n (File: SGN-E303833+) 1 TCGATCTTCC CAGGAACAAT GAGTCGGTCG AGTAGGACAC TTTATGTTGG CAATCTTCCT 61 GGTGATGTTC GTGAGCGTGA AGTGGAAGAT CTCTTTTACA AGTATGGACC GATTGCACAT 121 ATTGAGCTGA AAATTCCACC AAGACCCCCT GGTTATGCTT TTGTTGAGTT TGAAGAGGCT 181 CGTGATGCTG AAGATGCTAT TCGTGGTCGT GATGGCTATG ATTTTGATGG GCACCGTCTG 241 CGGGTTGAGC TTGCACATGG CGGGCGTGGT AACTCATCAT CAAATGATCG TTATGGTGGT 301 GGCGGTGGCG GCCGTGGTCA GCGTGGTGGA GGAGTGTCAA GACGTTCAGA TTATCGAGTG 361 TTAGTTACAG GATTACCCCA TTCAGCATCG TGGCAGGATC TCAAGGATCA CATGCGCCGT 421 GCTGGGGATG TTTGTTTCTC CCAAGTTTTC CGTGACGGGA GTGGAACCAC TGGTATAATT 481 GATTATACAA ACTATGATGA CATGAAATAT GCTATCAAAA AGCTTGATGA CTCTGAGTT Predicted gene structure (within gDNA segment 9883 to 4366): Exon 1 8419 8324 ( 96 n); cDNA 7 102 ( 96 n); score: 0.865 Intron 1 8323 8237 ( 87 n); Pd: 1.000 (s: 0.90), Pa: 0.999 (s: 0.92) Exon 2 8236 8171 ( 66 n); cDNA 103 168 ( 66 n); score: 0.939 Intron 2 8170 8074 ( 97 n); Pd: 0.999 (s: 0.96), Pa: 0.998 (s: 0.90) Exon 3 8073 7999 ( 75 n); cDNA 169 243 ( 75 n); score: 0.880 Intron 3 7998 7621 ( 378 n); Pd: 0.996 (s: 0.88), Pa: 0.996 (s: 0.82) Exon 4 7620 7494 ( 127 n); cDNA 244 358 ( 115 n); score: 0.661 Intron 4 7493 7413 ( 81 n); Pd: 0.994 (s: 0.58), Pa: 0.994 (s: 0.91) Exon 5 7412 7366 ( 47 n); cDNA 359 405 ( 47 n); score: 0.915 Intron 5 7365 7259 ( 107 n); Pd: 0.700 (s: 0.91), Pa: 0.998 (s: 0.92) Exon 6 7258 7201 ( 58 n); cDNA 406 463 ( 58 n); score: 0.914 Intron 6 7200 5101 (2100 n); Pd: 0.922 (s: 0.92), Pa: 0.926 (s: 0.86) Exon 7 5100 5051 ( 50 n); cDNA 464 513 ( 50 n); score: 0.860 Intron 7 5050 4939 ( 112 n); Pd: 0.999 (s: 0.86), Pa: 0.959 (s: 0) Exon 8 4938 4913 ( 26 n); cDNA 514 539 ( 26 n); score: 0.885 MATCH C06HBa0024L21.1-4- SGN-E303833+ 0.828 545 1.011 C PGS_C06HBa0024L21.1-4-_SGN-E303833+ (8419 8324,8236 8171,8073 7999,7620 7494,7412 7366,7258 7201,5100 5051,4938 4913) Alignment (genomic DNA sequence = upper lines): TTTTTAGGAA CAATGAGTCG TTCAAGTAGG ACGATTTATG TTGGTAATCT TCCTGGTGAT 8360 || ||||| |||||||||| || |||||| || |||||| |||| ||||| |||||||||| TTCCCAGGAA CAATGAGTCG GTCGAGTAGG ACACTTTATG TTGGCAATCT TCCTGGTGAT 66 ATTCGTGAGC GAGAAGTGGA GGATCTGTTC TACAAGGTAC TTGTATAACA CTTAGCTTCA 8300 ||||||||| | |||||||| ||||| || |||||| GTTCGTGAGC GTGAAGTGGA AGATCTCTTT TACAAG.... .......... .......... 102 TACTTTAGTT GGATGTCATT TACTATGCTC ATAAACTTAA ATGTGTGTGG CGTATAATTG 8240 .......... .......... .......... .......... .......... .......... 102 TAGTATGGCC CGATAGCACA TATTGATCTG AAAATTCCAC CAAGACCCCC AGGTTATGCT 8180 ||||| | |||| ||||| |||||| ||| |||||||||| |||||||||| ||||||||| ...TATGGAC CGATTGCACA TATTGAGCTG AAAATTCCAC CAAGACCCCC TGGTTATGCT 159 TTTGTTGAGG TAAGTTTTGA CTGCATTGGC TAAAATGAAT TTCATTGGAT ATTTCCTTCT 8120 ||||||||| TTTGTTGAG. .......... .......... .......... .......... .......... 168 CAATTGTTAA CCTATTTTGA CATTGTTTTG TTGGAACTAA ACACAGTTTG AAGAGGCACG 8060 |||| ||||||| || .......... .......... .......... .......... ......TTTG AAGAGGCTCG 182 CGATGCTGAG GATGCTATTC GTGGGCGCGA TGGCTATGAA TTTGATGGGC ATCGTTTGAG 8000 |||||||| |||||||||| |||| || || ||||||||| |||||||||| | ||| || | TGATGCTGAA GATGCTATTC GTGGTCGTGA TGGCTATGAT TTTGATGGGC ACCGTCTGCG 242 GGTTAGTAAA ATCTTAACAG CATATAGGAT ACACACACAT GAATCAATTG TATCCTCTGT 7940 | G......... .......... .......... .......... .......... .......... 243 TTACTCTGAG AAGTATGATT GACTTGCATT TTTGAATCAG GGTTTCCAAT TCTTGTATTA 7880 .......... .......... .......... .......... .......... .......... 243 ATTGCATTTC GTTGACCCTA GCATTTCACC TAAACCATTA TGTTTCTTTA TTAAATGCTT 7820 .......... .......... .......... .......... .......... .......... 243 GTCCCAAATT AGTTGGGATC AGTTTTATAA ATTGTCTGTA ACCATCCTAC TTTATCCAGG 7760 .......... .......... .......... .......... .......... .......... 243 CGTATTTTTC TTTTCAAGCT TAGTTTGTCT TTCAAGGCAA ATTAACATGT CTAATACATA 7700 .......... .......... .......... .......... .......... .......... 243 TAAGACACCT AAATGCTAAA TAGTTTTCTT TTTGAGGTGC TTAAGATCTA AGCCTACTGA 7640 .......... .......... .......... .......... .......... .......... 243 AACTGTTACA TGTATGCAGG TTGAGCTTGC ACATGGTGGG CGTGGTAACT CATCGTCAGA 7580 | |||||||||| |||||| ||| |||||||||| |||| ||| | .......... .........G TTGAGCTTGC ACATGGCGGG CGTGGTAACT CATCATCA-A 283 TCGTTATAAT AGTGGCAATA ATAGTGGCCA TAATGGTGGT CGTAATAATC ACAAATTTGG 7520 || || || || | |||| | ||| || ||| | | | || -----ATGAT CGT---TATG GTGGTGG-C- -GGTGGCGGC CGTGGTCAGC GTGGTGGAGG 332 AGCGCCCAAA CGTACCGAGT ATCGAGGCAC GTATGTTATT AATGTGCACA TAATTTTCTT 7460 || | | | | ||| | || | |||||| AGTGTCAAGA CGTTCAGATT ATCGAG.... .......... .......... .......... 358 TATTGCATTT CATGCCTTCT TGATCTAATT CACTTACTCA TTTTCAGTTT TAGTTACCGG 7400 | | ||||||| || .......... .......... .......... .......... .......TGT TAGTTACAGG 371 ATTGCCCCAT TCAGCATCCT GGCAGGATCT CAAGGTGAGT GGTGTCTGTG TGGTAAATTA 7340 ||| |||||| |||||||| | |||||||||| |||| ATTACCCCAT TCAGCATCGT GGCAGGATCT CAAG...... .......... .......... 405 TAAGGACCGT GGCTAAAAGT GATCTTCCTT TTCTGGTATC TTCTAGCTTC TGAATATTGG 7280 .......... .......... .......... .......... .......... .......... 405 TATTCTATGT TTCTTATGTA GGATCATATG CGTCGAGCTG GGGATGTTTG TTTCTCACAA 7220 ||||| ||| || || |||| |||||||||| |||||| ||| .......... .......... .GATCACATG CGCCGTGCTG GGGATGTTTG TTTCTCCCAA 444 GTTTTCCGTG AGGGGAGTGG TAAGATAATT TGCAACAGAT ACTAGTTTTA TGCTCCTCTT 7160 |||||||||| | ||||||| GTTTTCCGTG ACGGGAGTG. .......... .......... .......... .......... 463 AATTGTCCCT TTGTTTTGTT TGTATAAGGG TTTGTTTTTA CTATGCCAAA GGAACTTGCC 7100 .......... .......... .......... .......... .......... .......... 463 TATATCAGGA CCTATATTGG TAAATTTGGT AAATTAAGAG TCAAGTCTCT ATAACTACCC 7040 .......... .......... .......... .......... .......... .......... 463 TTTCTCTTTT TTTCCTTTTC CGTCTTTCTG TTGGGTTTTC TTCTTTGAGA AGTGGTTGGA 6980 .......... .......... .......... .......... .......... .......... 463 GAAGGATGGA TATTTGATCC TTTTTTTTGA GAATAGCAAT ATATTTTCTG TGGATAACTT 6920 .......... .......... .......... .......... .......... .......... 463 GAATTTCAAT TGTTTTTATG GCTCTTTAAC TTACTACCTT GAGCTGACTA TCTTTCATAA 6860 .......... .......... .......... .......... .......... .......... 463 TGCAACTAGA AAGGCTTTCT CAAAGTAGAA TCATTTCTTA AATCTTGTGT TGAATGTGAC 6800 .......... .......... .......... .......... .......... .......... 463 TGTGGTTCAT CATTGGGTCT GCAAGTGTCT TTCCCAACCA TATAACAGCT AATATTATCT 6740 .......... .......... .......... .......... .......... .......... 463 TTCAGACCCA ATCAAAACCA AATCTTGTTC TATGGCCCGT GAATAGATGA TATTTTTGGG 6680 .......... .......... .......... .......... .......... .......... 463 CTATTGTTGA GAACAAAATT GCTGTACGCT GCAGTAACGT GCATTAGTTA TATATTTGAT 6620 .......... .......... .......... .......... .......... .......... 463 GACTTCTGGC TTAGTTTATA GTTTATAGTT TATACTATAA TGTTTAGCCA ACTTGGCTGG 6560 .......... .......... .......... .......... .......... .......... 463 ATAAAGTGAC TGCGTCACTC AGTTTGGATG GGATAATGGG TGCTATTACC AATCTTGGTA 6500 .......... .......... .......... .......... .......... .......... 463 AAATGGTCAG GTTTGATATA TTATATATCC TTTGACTGAA GTTTGTCATT GTACATCATC 6440 .......... .......... .......... .......... .......... .......... 463 ATTCAAAACA TAGTTCCATC CGTTTTAGTC AGAAAACTAT TTTTCTCTTC TGGTGCCATA 6380 .......... .......... .......... .......... .......... .......... 463 GTAATATAAT AGAACAAGAA AGAATTACAG AAAGTTAAAA AGTATTAACA TAAAAAAAAA 6320 .......... .......... .......... .......... .......... .......... 463 GTAGATGAAA AATTTGTTGG GGTAACGCAT AAAGTAAAAA AAATAGCAGG GAAAAATAAA 6260 .......... .......... .......... .......... .......... .......... 463 ATGGAGCAGA AAAAGAGAAA GGAGGGAAGT CTAAAAGAAA TCCTTGGTTT GGGGTTGAGG 6200 .......... .......... .......... .......... .......... .......... 463 AAAGACGGTA ATGTTTCAAC CCAGGTGTTG TAGAAGAGTA GATTAATTAT TTTTTGGGGC 6140 .......... .......... .......... .......... .......... .......... 463 ATTTGTTGGA GAGGTAAGTG GGAGCTCTGT TGGACGATGA GGAGAAGATA GCAGGAAATA 6080 .......... .......... .......... .......... .......... .......... 463 AGTGAGCTTA TTTTTTCATC TTCCATGTTG AATAACATCC TGTGCTTACC TGTGTATTCC 6020 .......... .......... .......... .......... .......... .......... 463 TCACTCTTTG AATAAATGTT GATGTGTGTC TGGATGTAAT GCCTGGATTA TGTCCCGCCT 5960 .......... .......... .......... .......... .......... .......... 463 GGTGATAGTG GTCCTCCATA ACAAGATAGT ACTGCTATCT GGCTTATTGC ATGTTACCAA 5900 .......... .......... .......... .......... .......... .......... 463 CCTTGAACAA GCCAAGATAA TGAAGAGGCT AATCTAATAA GTGGGCTTAA CAATGGATAC 5840 .......... .......... .......... .......... .......... .......... 463 ACCAAGAATA GGAGTGGGTC TGGCTCTAAT ATCATACCAT GTTAAGTGGA AAATTTGGGC 5780 .......... .......... .......... .......... .......... .......... 463 CCAACTCAAC TCCAAAAGGT ACCTTAGTGC CAGATCATGC AATAAGATCT CTTTTTCCCT 5720 .......... .......... .......... .......... .......... .......... 463 CTTTCCTTCA TGTTTCAGAT CATGCTAACT CAACTCCAAA AGGTAGCTTA GTGCAAGATC 5660 .......... .......... .......... .......... .......... .......... 463 ATGCAATAAG ATCTCTTTTT ACCTCTTTCC TTTAATGTTT CAGATTATGC AATAAGATAA 5600 .......... .......... .......... .......... .......... .......... 463 CTTTCCTTCT TTCCTTTAAT TGTTTCAGTT AGCTTGCTAT TAGGTTTTAC ATAGAAAATT 5540 .......... .......... .......... .......... .......... .......... 463 GTCATCATTT TTGTCAGGAC AAATATACTA GAGCCTTTAT AATTAAGACA GTTAATAGAC 5480 .......... .......... .......... .......... .......... .......... 463 AGATGGCAAA GATGGTTCGA CTCTAAAATA GGAATTTAAT AGTTGATTTT ACCCTATATA 5420 .......... .......... .......... .......... .......... .......... 463 AATGGAATTG AAAATAGTGA TTGCCACTCA AAATCTAGGG TCAGCTGAGA TTTATTGGAT 5360 .......... .......... .......... .......... .......... .......... 463 ATTTCAATTT TGTGGTTGTG ACTAAAATGG CCCGAATGTA TGGCTGAGCA GTTTAAAGAC 5300 .......... .......... .......... .......... .......... .......... 463 CTGTGGAAAT AATGTGCTTC AGATTTTTTT TATTCTGTAA TCAAATGTGG TGCTGCCTTA 5240 .......... .......... .......... .......... .......... .......... 463 TCTTTGAAAT AATTTCTTGT GCTTCTACTC AATTTTTGTT GTGGCAAGCA CCCTACTCTT 5180 .......... .......... .......... .......... .......... .......... 463 GCTATGACTT GTGAATTTAC TCTCCTTAAG TGATTCTTTT GTGGTGGATG GTGCGCTAAC 5120 .......... .......... .......... .......... .......... .......... 463 AATCAGTTTT GCTCTTCAGG GACCACTGGG ATTGTGGATT ATACCAACTA TGACGACATG 5060 | |||||||| || | |||| |||| ||||| ||| |||||| .......... .........G AACCACTGGT ATAATTGATT ATACAAACTA TGATGACATG 504 AAATATGCTG TAAGCTATCT CCTGTTTCTT ATTCTGTATA ATTATCCTCA ATTTTTGTTC 5000 ||||||||| AAATATGCT. .......... .......... .......... .......... .......... 513 AAGATATTTG AAATATGTTT ATGCTCGACT AACGAGTGTA ATTAATTTTC CTTGTATGTA 4940 .......... .......... .......... .......... .......... .......... 513 GATAAAAAAA CTTGATGAAT CTGAGTT 4913 || ||||| |||||||| | ||||||| .ATCAAAAAG CTTGATGACT CTGAGTT 539 hqPGS_C06HBa0024L21.1-4-_SGN-E303833+ (8419 8324,8236 8171,8073 7999,7620 7494,7412 7366,7258 7201,5100 5051,4938 4913) ******************************************************************************** EST sequence 29 +strand 516 n (File: SGN-E338532+) 1 TGAGTCGGTC GAGTAGGACA CTTTATGTTG GCAATCTTCC TGGTGATGTT CGTGAGCGTG 61 AAGTGGAAGA TCTCTTTTAC AAGTATGGAC CGATTGCACA TATTGAGCTG AAAATTCCAC 121 CAAGACCCCC TGGTTATGCT TTTGTTGAGT TTGAAGAGGC TCGTGATGCT GAAGATGCTA 181 TTCGTGGTCG TGATGGCTAT GATTTTGATG GGCACCGTCT GCGGGTTGAG CTTGCACATG 241 GCGGGCGTGG TAACTCATCA TCAAATGATC GTTATGGTGG TGGCGGTGGC GGCCGTGGTC 301 AGCGTGGTGG AGGAGTGTCA AGACGTTCAG ATTATCGAGT GTTAGTTACA GGATTACCCC 361 ATTCAGCATC GTGGCAGGAT CTCAAGGATC ACATGCGCCG TGCTGGGGAT GTTTGTTTCT 421 CCCAAGTTTT CCGTGACGGG AGTGGAACCA CTGGTATAAT TGATTATACA AACTATGATG 481 ACATGAAATA TGCTATCAAA AAGCTTGATG ACTCTG Predicted gene structure (within gDNA segment 9882 to 4406): Exon 1 8406 8324 ( 83 n); cDNA 1 83 ( 83 n); score: 0.880 Intron 1 8323 8237 ( 87 n); Pd: 1.000 (s: 0.90), Pa: 0.999 (s: 0.92) Exon 2 8236 8171 ( 66 n); cDNA 84 149 ( 66 n); score: 0.939 Intron 2 8170 8074 ( 97 n); Pd: 0.999 (s: 0.96), Pa: 0.998 (s: 0.90) Exon 3 8073 7999 ( 75 n); cDNA 150 224 ( 75 n); score: 0.880 Intron 3 7998 7621 ( 378 n); Pd: 0.996 (s: 0.88), Pa: 0.996 (s: 0.82) Exon 4 7620 7494 ( 127 n); cDNA 225 339 ( 115 n); score: 0.661 Intron 4 7493 7413 ( 81 n); Pd: 0.994 (s: 0.58), Pa: 0.994 (s: 0.91) Exon 5 7412 7366 ( 47 n); cDNA 340 386 ( 47 n); score: 0.915 Intron 5 7365 7259 ( 107 n); Pd: 0.700 (s: 0.91), Pa: 0.998 (s: 0.92) Exon 6 7258 7201 ( 58 n); cDNA 387 444 ( 58 n); score: 0.914 Intron 6 7200 5101 (2100 n); Pd: 0.922 (s: 0.92), Pa: 0.926 (s: 0.86) Exon 7 5100 5051 ( 50 n); cDNA 445 494 ( 50 n); score: 0.860 Intron 7 5050 4939 ( 112 n); Pd: 0.999 (s: 0.86), Pa: 0.959 (s: 0) Exon 8 4938 4917 ( 22 n); cDNA 495 516 ( 22 n); score: 0.864 MATCH C06HBa0024L21.1-4- SGN-E338532+ 0.830 528 1.023 C PGS_C06HBa0024L21.1-4-_SGN-E338532+ (8406 8324,8236 8171,8073 7999,7620 7494,7412 7366,7258 7201,5100 5051,4938 4917) Alignment (genomic DNA sequence = upper lines): TGAGTCGTTC AAGTAGGACG ATTTATGTTG GTAATCTTCC TGGTGATATT CGTGAGCGAG 8347 ||||||| || |||||||| ||||||||| | |||||||| ||||||| || |||||||| | TGAGTCGGTC GAGTAGGACA CTTTATGTTG GCAATCTTCC TGGTGATGTT CGTGAGCGTG 60 AAGTGGAGGA TCTGTTCTAC AAGGTACTTG TATAACACTT AGCTTCATAC TTTAGTTGGA 8287 ||||||| || ||| || ||| ||| AAGTGGAAGA TCTCTTTTAC AAG....... .......... .......... .......... 83 TGTCATTTAC TATGCTCATA AACTTAAATG TGTGTGGCGT ATAATTGTAG TATGGCCCGA 8227 ||||| |||| .......... .......... .......... .......... .......... TATGGACCGA 93 TAGCACATAT TGATCTGAAA ATTCCACCAA GACCCCCAGG TTATGCTTTT GTTGAGGTAA 8167 | |||||||| ||| |||||| |||||||||| ||||||| || |||||||||| |||||| TTGCACATAT TGAGCTGAAA ATTCCACCAA GACCCCCTGG TTATGCTTTT GTTGAG.... 149 GTTTTGACTG CATTGGCTAA AATGAATTTC ATTGGATATT TCCTTCTCAA TTGTTAACCT 8107 .......... .......... .......... .......... .......... .......... 149 ATTTTGACAT TGTTTTGTTG GAACTAAACA CAGTTTGAAG AGGCACGCGA TGCTGAGGAT 8047 ||||||| |||| || || |||||| ||| .......... .......... .......... ...TTTGAAG AGGCTCGTGA TGCTGAAGAT 176 GCTATTCGTG GGCGCGATGG CTATGAATTT GATGGGCATC GTTTGAGGGT TAGTAAAATC 7987 |||||||||| | || ||||| |||||| ||| |||||||| | || || || GCTATTCGTG GTCGTGATGG CTATGATTTT GATGGGCACC GTCTGCGG.. .......... 224 TTAACAGCAT ATAGGATACA CACACATGAA TCAATTGTAT CCTCTGTTTA CTCTGAGAAG 7927 .......... .......... .......... .......... .......... .......... 224 TATGATTGAC TTGCATTTTT GAATCAGGGT TTCCAATTCT TGTATTAATT GCATTTCGTT 7867 .......... .......... .......... .......... .......... .......... 224 GACCCTAGCA TTTCACCTAA ACCATTATGT TTCTTTATTA AATGCTTGTC CCAAATTAGT 7807 .......... .......... .......... .......... .......... .......... 224 TGGGATCAGT TTTATAAATT GTCTGTAACC ATCCTACTTT ATCCAGGCGT ATTTTTCTTT 7747 .......... .......... .......... .......... .......... .......... 224 TCAAGCTTAG TTTGTCTTTC AAGGCAAATT AACATGTCTA ATACATATAA GACACCTAAA 7687 .......... .......... .......... .......... .......... .......... 224 TGCTAAATAG TTTTCTTTTT GAGGTGCTTA AGATCTAAGC CTACTGAAAC TGTTACATGT 7627 .......... .......... .......... .......... .......... .......... 224 ATGCAGGTTG AGCTTGCACA TGGTGGGCGT GGTAACTCAT CGTCAGATCG TTATAATAGT 7567 |||| |||||||||| ||| |||||| |||||||||| | ||| | || || || ......GTTG AGCTTGCACA TGGCGGGCGT GGTAACTCAT CATCA-A--- --ATGATCGT 272 GGCAATAATA GTGGCCATAA TGGTGGTCGT AATAATCACA AATTTGGAGC GCCCAAACGT 7507 || | |||| | ||| || ||| | | | |||| | | | |||| ---TATGGTG GTGG-C--GG TGGCGGCCGT GGTCAGCGTG GTGGAGGAGT GTCAAGACGT 326 ACCGAGTATC GAGGCACGTA TGTTATTAAT GTGCACATAA TTTTCTTTAT TGCATTTCAT 7447 | || |||| ||| TCAGATTATC GAG....... .......... .......... .......... .......... 339 GCCTTCTTGA TCTAATTCAC TTACTCATTT TCAGTTTTAG TTACCGGATT GCCCCATTCA 7387 | |||| |||| ||||| ||||||||| .......... .......... .......... ....TGTTAG TTACAGGATT ACCCCATTCA 365 GCATCCTGGC AGGATCTCAA GGTGAGTGGT GTCTGTGTGG TAAATTATAA GGACCGTGGC 7327 ||||| |||| |||||||||| | GCATCGTGGC AGGATCTCAA G......... .......... .......... .......... 386 TAAAAGTGAT CTTCCTTTTC TGGTATCTTC TAGCTTCTGA ATATTGGTAT TCTATGTTTC 7267 .......... .......... .......... .......... .......... .......... 386 TTATGTAGGA TCATATGCGT CGAGCTGGGG ATGTTTGTTT CTCACAAGTT TTCCGTGAGG 7207 || ||| ||||| || ||||||| |||||||||| ||| |||||| |||||||| | ........GA TCACATGCGC CGTGCTGGGG ATGTTTGTTT CTCCCAAGTT TTCCGTGACG 438 GGAGTGGTAA GATAATTTGC AACAGATACT AGTTTTATGC TCCTCTTAAT TGTCCCTTTG 7147 |||||| GGAGTG.... .......... .......... .......... .......... .......... 444 TTTTGTTTGT ATAAGGGTTT GTTTTTACTA TGCCAAAGGA ACTTGCCTAT ATCAGGACCT 7087 .......... .......... .......... .......... .......... .......... 444 ATATTGGTAA ATTTGGTAAA TTAAGAGTCA AGTCTCTATA ACTACCCTTT CTCTTTTTTT 7027 .......... .......... .......... .......... .......... .......... 444 CCTTTTCCGT CTTTCTGTTG GGTTTTCTTC TTTGAGAAGT GGTTGGAGAA GGATGGATAT 6967 .......... .......... .......... .......... .......... .......... 444 TTGATCCTTT TTTTTGAGAA TAGCAATATA TTTTCTGTGG ATAACTTGAA TTTCAATTGT 6907 .......... .......... .......... .......... .......... .......... 444 TTTTATGGCT CTTTAACTTA CTACCTTGAG CTGACTATCT TTCATAATGC AACTAGAAAG 6847 .......... .......... .......... .......... .......... .......... 444 GCTTTCTCAA AGTAGAATCA TTTCTTAAAT CTTGTGTTGA ATGTGACTGT GGTTCATCAT 6787 .......... .......... .......... .......... .......... .......... 444 TGGGTCTGCA AGTGTCTTTC CCAACCATAT AACAGCTAAT ATTATCTTTC AGACCCAATC 6727 .......... .......... .......... .......... .......... .......... 444 AAAACCAAAT CTTGTTCTAT GGCCCGTGAA TAGATGATAT TTTTGGGCTA TTGTTGAGAA 6667 .......... .......... .......... .......... .......... .......... 444 CAAAATTGCT GTACGCTGCA GTAACGTGCA TTAGTTATAT ATTTGATGAC TTCTGGCTTA 6607 .......... .......... .......... .......... .......... .......... 444 GTTTATAGTT TATAGTTTAT ACTATAATGT TTAGCCAACT TGGCTGGATA AAGTGACTGC 6547 .......... .......... .......... .......... .......... .......... 444 GTCACTCAGT TTGGATGGGA TAATGGGTGC TATTACCAAT CTTGGTAAAA TGGTCAGGTT 6487 .......... .......... .......... .......... .......... .......... 444 TGATATATTA TATATCCTTT GACTGAAGTT TGTCATTGTA CATCATCATT CAAAACATAG 6427 .......... .......... .......... .......... .......... .......... 444 TTCCATCCGT TTTAGTCAGA AAACTATTTT TCTCTTCTGG TGCCATAGTA ATATAATAGA 6367 .......... .......... .......... .......... .......... .......... 444 ACAAGAAAGA ATTACAGAAA GTTAAAAAGT ATTAACATAA AAAAAAAGTA GATGAAAAAT 6307 .......... .......... .......... .......... .......... .......... 444 TTGTTGGGGT AACGCATAAA GTAAAAAAAA TAGCAGGGAA AAATAAAATG GAGCAGAAAA 6247 .......... .......... .......... .......... .......... .......... 444 AGAGAAAGGA GGGAAGTCTA AAAGAAATCC TTGGTTTGGG GTTGAGGAAA GACGGTAATG 6187 .......... .......... .......... .......... .......... .......... 444 TTTCAACCCA GGTGTTGTAG AAGAGTAGAT TAATTATTTT TTGGGGCATT TGTTGGAGAG 6127 .......... .......... .......... .......... .......... .......... 444 GTAAGTGGGA GCTCTGTTGG ACGATGAGGA GAAGATAGCA GGAAATAAGT GAGCTTATTT 6067 .......... .......... .......... .......... .......... .......... 444 TTTCATCTTC CATGTTGAAT AACATCCTGT GCTTACCTGT GTATTCCTCA CTCTTTGAAT 6007 .......... .......... .......... .......... .......... .......... 444 AAATGTTGAT GTGTGTCTGG ATGTAATGCC TGGATTATGT CCCGCCTGGT GATAGTGGTC 5947 .......... .......... .......... .......... .......... .......... 444 CTCCATAACA AGATAGTACT GCTATCTGGC TTATTGCATG TTACCAACCT TGAACAAGCC 5887 .......... .......... .......... .......... .......... .......... 444 AAGATAATGA AGAGGCTAAT CTAATAAGTG GGCTTAACAA TGGATACACC AAGAATAGGA 5827 .......... .......... .......... .......... .......... .......... 444 GTGGGTCTGG CTCTAATATC ATACCATGTT AAGTGGAAAA TTTGGGCCCA ACTCAACTCC 5767 .......... .......... .......... .......... .......... .......... 444 AAAAGGTACC TTAGTGCCAG ATCATGCAAT AAGATCTCTT TTTCCCTCTT TCCTTCATGT 5707 .......... .......... .......... .......... .......... .......... 444 TTCAGATCAT GCTAACTCAA CTCCAAAAGG TAGCTTAGTG CAAGATCATG CAATAAGATC 5647 .......... .......... .......... .......... .......... .......... 444 TCTTTTTACC TCTTTCCTTT AATGTTTCAG ATTATGCAAT AAGATAACTT TCCTTCTTTC 5587 .......... .......... .......... .......... .......... .......... 444 CTTTAATTGT TTCAGTTAGC TTGCTATTAG GTTTTACATA GAAAATTGTC ATCATTTTTG 5527 .......... .......... .......... .......... .......... .......... 444 TCAGGACAAA TATACTAGAG CCTTTATAAT TAAGACAGTT AATAGACAGA TGGCAAAGAT 5467 .......... .......... .......... .......... .......... .......... 444 GGTTCGACTC TAAAATAGGA ATTTAATAGT TGATTTTACC CTATATAAAT GGAATTGAAA 5407 .......... .......... .......... .......... .......... .......... 444 ATAGTGATTG CCACTCAAAA TCTAGGGTCA GCTGAGATTT ATTGGATATT TCAATTTTGT 5347 .......... .......... .......... .......... .......... .......... 444 GGTTGTGACT AAAATGGCCC GAATGTATGG CTGAGCAGTT TAAAGACCTG TGGAAATAAT 5287 .......... .......... .......... .......... .......... .......... 444 GTGCTTCAGA TTTTTTTTAT TCTGTAATCA AATGTGGTGC TGCCTTATCT TTGAAATAAT 5227 .......... .......... .......... .......... .......... .......... 444 TTCTTGTGCT TCTACTCAAT TTTTGTTGTG GCAAGCACCC TACTCTTGCT ATGACTTGTG 5167 .......... .......... .......... .......... .......... .......... 444 AATTTACTCT CCTTAAGTGA TTCTTTTGTG GTGGATGGTG CGCTAACAAT CAGTTTTGCT 5107 .......... .......... .......... .......... .......... .......... 444 CTTCAGGGAC CACTGGGATT GTGGATTATA CCAACTATGA CGACATGAAA TATGCTGTAA 5047 | || |||||| || | ||||||| | |||||||| ||||||||| |||||| ......GAAC CACTGGTATA ATTGATTATA CAAACTATGA TGACATGAAA TATGCT.... 494 GCTATCTCCT GTTTCTTATT CTGTATAATT ATCCTCAATT TTTGTTCAAG ATATTTGAAA 4987 .......... .......... .......... .......... .......... .......... 494 TATGTTTATG CTCGACTAAC GAGTGTAATT AATTTTCCTT GTATGTAGAT AAAAAAACTT 4927 || ||||| ||| .......... .......... .......... .......... ........AT CAAAAAGCTT 506 GATGAATCTG 4917 ||||| |||| GATGACTCTG 516 hqPGS_C06HBa0024L21.1-4-_SGN-E338532+ (8406 8324,8236 8171,8073 7999,7620 7494,7412 7366,7258 7201,5100 5051,4938 4917) ******************************************************************************** EST sequence 40 +strand 547 n (File: SGN-E205241+) 1 TCCTTCTCTA AGCGCTCTGT GTTTTCATCC TTCATCAATC TTCTAGTAAA GGAACAATGA 61 GTCGTTCAAG TAGGACGATT TATGTTGGTA ATCTTCCTGG TGATATTCGT GAGCGAGAAG 121 TGGAGGATCT GTTCTACAAG TATGGCCCGA TAGCACATAT TGATCTGAAA ATTCCACCAA 181 GACCCCCAGG TTATGCTTTT GTTGAGTTTG AAGAGGCACG CGATGCTGAG GATGCTATTC 241 GTGGGCGCGA TGGCTATGAA TTTGATGGGC ATCGTTTGAG GGTTGAGCTT GCACATGGTG 301 GGCGTGGTAA CTCATCGTCA GATCGTTATA ATAGTGGCAA TAATAGTGGC CATAATGGTG 361 GTCGTAATAA TCACAAATTT GGAGCGCCCA AACGTACCGA GTATCGAGTT TTAGTTACCG 421 GATTGCCCCA TTCAGCATCC TGGCAGGATC TCAAGGATCA TATGCGTCGA GCTGGGGATG 481 TTTGTTTCTC ACAAGTTTTC CGTGAGGGGA GTGGGACCAC TGGGATTGTG GATTATACCA 541 ACTATGA Predicted gene structure (within gDNA segment 9848 to 4457): Exon 1 9248 9198 ( 51 n); cDNA 1 51 ( 51 n); score: 1.000 Intron 1 9197 8413 ( 785 n); Pd: 0.980 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 2 8412 8324 ( 89 n); cDNA 52 140 ( 89 n); score: 1.000 Intron 2 8323 8237 ( 87 n); Pd: 1.000 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 3 8236 8171 ( 66 n); cDNA 141 206 ( 66 n); score: 1.000 Intron 3 8170 8074 ( 97 n); Pd: 0.999 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 4 8073 7999 ( 75 n); cDNA 207 281 ( 75 n); score: 1.000 Intron 4 7998 7621 ( 378 n); Pd: 0.996 (s: 1.00), Pa: 0.996 (s: 1.00) Exon 5 7620 7494 ( 127 n); cDNA 282 408 ( 127 n); score: 1.000 Intron 5 7493 7413 ( 81 n); Pd: 0.994 (s: 1.00), Pa: 0.994 (s: 1.00) Exon 6 7412 7366 ( 47 n); cDNA 409 455 ( 47 n); score: 1.000 Intron 6 7365 7259 ( 107 n); Pd: 0.700 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 7 7258 7201 ( 58 n); cDNA 456 513 ( 58 n); score: 1.000 Intron 7 7200 5101 (2100 n); Pd: 0.922 (s: 1.00), Pa: 0.926 (s: 0) Exon 8 5100 5067 ( 34 n); cDNA 514 547 ( 34 n); score: 1.000 MATCH C06HBa0024L21.1-4- SGN-E205241+ 1.000 547 1.000 C PGS_C06HBa0024L21.1-4-_SGN-E205241+ (9248 9198,8412 8324,8236 8171,8073 7999,7620 7494,7412 7366,7258 7201,5100 5067) Alignment (genomic DNA sequence = upper lines): TCCTTCTCTA AGCGCTCTGT GTTTTCATCC TTCATCAATC TTCTAGTAAA GGTACGTTCC 9189 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| | TCCTTCTCTA AGCGCTCTGT GTTTTCATCC TTCATCAATC TTCTAGTAAA G......... 51 TTCGGTCTTT GTTAATGGAG GTCCGTTTAA TCGGCATCTA TCAAACGAAA TAGCTAACAA 9129 .......... .......... .......... .......... .......... .......... 51 GATCTGTTTT TTAATTTTAG TTTCTTCCGT TTTGCTCATT TTACCCAGCG AAAAATGTAT 9069 .......... .......... .......... .......... .......... .......... 51 TTCAATTCAC TTAAAACGTT GTTCAGAGGC GGATCTAGCA TAGAATCAGT CTACATACAG 9009 .......... .......... .......... .......... .......... .......... 51 GAAAAATAGC AATAAAGTAT CTATACATAA TTTGTGTATG TAATTGTGTA TCCATTATTA 8949 .......... .......... .......... .......... .......... .......... 51 GTGTGTTCTG TATGCAGGAA ATGTTTTTTT TCGTCTTGGA AAATAACCGG GTTTCTTACT 8889 .......... .......... .......... .......... .......... .......... 51 TAGTTGTGTT CGGTAGGCAA GCGAAAAATA TTAGTACAAT TATTTGTATG TAATCTAGAC 8829 .......... .......... .......... .......... .......... .......... 51 AAATACTCTT GAGTTGGGTG GTGGGGATGG TGGCTAAGAG TGTGGTGGTG AAGATGAGGT 8769 .......... .......... .......... .......... .......... .......... 51 TGGTTGGAGG GTGGGGAGAA CACAATCAAT GTGGAATTTT ATTTGTTGAA CCTGTTTTCA 8709 .......... .......... .......... .......... .......... .......... 51 CTACTTCCAT TGAGGAAGTC AAATTTTTTT ATTTTGAAGC AACTTAATTT CCTAGAGAAG 8649 .......... .......... .......... .......... .......... .......... 51 ATGTTTTCCA TAAATTTTAC CAACCATGAG AAAACTTGGA AACATTTTTC TGGAAAATGG 8589 .......... .......... .......... .......... .......... .......... 51 TTTCATTCGT ATCTAACACA CCCTATATGT ATGTTTGTTA CTTTGTTTAT GTATTTGTGT 8529 .......... .......... .......... .......... .......... .......... 51 GCGAATCAAG TTGATTGCTC AAGTTGTGTT TTTGTGACTT AAGTTCTTCA TGAATTTTAT 8469 .......... .......... .......... .......... .......... .......... 51 CCATTTTTGT TTCTCAGGTG GGTTTTGATT GTATTTTTTT GTTGAATTAT TTTTAGGAAC 8409 |||| .......... .......... .......... .......... .......... ......GAAC 55 AATGAGTCGT TCAAGTAGGA CGATTTATGT TGGTAATCTT CCTGGTGATA TTCGTGAGCG 8349 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATGAGTCGT TCAAGTAGGA CGATTTATGT TGGTAATCTT CCTGGTGATA TTCGTGAGCG 115 AGAAGTGGAG GATCTGTTCT ACAAGGTACT TGTATAACAC TTAGCTTCAT ACTTTAGTTG 8289 |||||||||| |||||||||| ||||| AGAAGTGGAG GATCTGTTCT ACAAG..... .......... .......... .......... 140 GATGTCATTT ACTATGCTCA TAAACTTAAA TGTGTGTGGC GTATAATTGT AGTATGGCCC 8229 |||||||| .......... .......... .......... .......... .......... ..TATGGCCC 148 GATAGCACAT ATTGATCTGA AAATTCCACC AAGACCCCCA GGTTATGCTT TTGTTGAGGT 8169 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||| GATAGCACAT ATTGATCTGA AAATTCCACC AAGACCCCCA GGTTATGCTT TTGTTGAG.. 206 AAGTTTTGAC TGCATTGGCT AAAATGAATT TCATTGGATA TTTCCTTCTC AATTGTTAAC 8109 .......... .......... .......... .......... .......... .......... 206 CTATTTTGAC ATTGTTTTGT TGGAACTAAA CACAGTTTGA AGAGGCACGC GATGCTGAGG 8049 ||||| |||||||||| |||||||||| .......... .......... .......... .....TTTGA AGAGGCACGC GATGCTGAGG 231 ATGCTATTCG TGGGCGCGAT GGCTATGAAT TTGATGGGCA TCGTTTGAGG GTTAGTAAAA 7989 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGCTATTCG TGGGCGCGAT GGCTATGAAT TTGATGGGCA TCGTTTGAGG .......... 281 TCTTAACAGC ATATAGGATA CACACACATG AATCAATTGT ATCCTCTGTT TACTCTGAGA 7929 .......... .......... .......... .......... .......... .......... 281 AGTATGATTG ACTTGCATTT TTGAATCAGG GTTTCCAATT CTTGTATTAA TTGCATTTCG 7869 .......... .......... .......... .......... .......... .......... 281 TTGACCCTAG CATTTCACCT AAACCATTAT GTTTCTTTAT TAAATGCTTG TCCCAAATTA 7809 .......... .......... .......... .......... .......... .......... 281 GTTGGGATCA GTTTTATAAA TTGTCTGTAA CCATCCTACT TTATCCAGGC GTATTTTTCT 7749 .......... .......... .......... .......... .......... .......... 281 TTTCAAGCTT AGTTTGTCTT TCAAGGCAAA TTAACATGTC TAATACATAT AAGACACCTA 7689 .......... .......... .......... .......... .......... .......... 281 AATGCTAAAT AGTTTTCTTT TTGAGGTGCT TAAGATCTAA GCCTACTGAA ACTGTTACAT 7629 .......... .......... .......... .......... .......... .......... 281 GTATGCAGGT TGAGCTTGCA CATGGTGGGC GTGGTAACTC ATCGTCAGAT CGTTATAATA 7569 || |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ........GT TGAGCTTGCA CATGGTGGGC GTGGTAACTC ATCGTCAGAT CGTTATAATA 333 GTGGCAATAA TAGTGGCCAT AATGGTGGTC GTAATAATCA CAAATTTGGA GCGCCCAAAC 7509 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGGCAATAA TAGTGGCCAT AATGGTGGTC GTAATAATCA CAAATTTGGA GCGCCCAAAC 393 GTACCGAGTA TCGAGGCACG TATGTTATTA ATGTGCACAT AATTTTCTTT ATTGCATTTC 7449 |||||||||| ||||| GTACCGAGTA TCGAG..... .......... .......... .......... .......... 408 ATGCCTTCTT GATCTAATTC ACTTACTCAT TTTCAGTTTT AGTTACCGGA TTGCCCCATT 7389 |||| |||||||||| |||||||||| .......... .......... .......... ......TTTT AGTTACCGGA TTGCCCCATT 432 CAGCATCCTG GCAGGATCTC AAGGTGAGTG GTGTCTGTGT GGTAAATTAT AAGGACCGTG 7329 |||||||||| |||||||||| ||| CAGCATCCTG GCAGGATCTC AAG....... .......... .......... .......... 455 GCTAAAAGTG ATCTTCCTTT TCTGGTATCT TCTAGCTTCT GAATATTGGT ATTCTATGTT 7269 .......... .......... .......... .......... .......... .......... 455 TCTTATGTAG GATCATATGC GTCGAGCTGG GGATGTTTGT TTCTCACAAG TTTTCCGTGA 7209 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... GATCATATGC GTCGAGCTGG GGATGTTTGT TTCTCACAAG TTTTCCGTGA 505 GGGGAGTGGT AAGATAATTT GCAACAGATA CTAGTTTTAT GCTCCTCTTA ATTGTCCCTT 7149 |||||||| GGGGAGTG.. .......... .......... .......... .......... .......... 513 TGTTTTGTTT GTATAAGGGT TTGTTTTTAC TATGCCAAAG GAACTTGCCT ATATCAGGAC 7089 .......... .......... .......... .......... .......... .......... 513 CTATATTGGT AAATTTGGTA AATTAAGAGT CAAGTCTCTA TAACTACCCT TTCTCTTTTT 7029 .......... .......... .......... .......... .......... .......... 513 TTCCTTTTCC GTCTTTCTGT TGGGTTTTCT TCTTTGAGAA GTGGTTGGAG AAGGATGGAT 6969 .......... .......... .......... .......... .......... .......... 513 ATTTGATCCT TTTTTTTGAG AATAGCAATA TATTTTCTGT GGATAACTTG AATTTCAATT 6909 .......... .......... .......... .......... .......... .......... 513 GTTTTTATGG CTCTTTAACT TACTACCTTG AGCTGACTAT CTTTCATAAT GCAACTAGAA 6849 .......... .......... .......... .......... .......... .......... 513 AGGCTTTCTC AAAGTAGAAT CATTTCTTAA ATCTTGTGTT GAATGTGACT GTGGTTCATC 6789 .......... .......... .......... .......... .......... .......... 513 ATTGGGTCTG CAAGTGTCTT TCCCAACCAT ATAACAGCTA ATATTATCTT TCAGACCCAA 6729 .......... .......... .......... .......... .......... .......... 513 TCAAAACCAA ATCTTGTTCT ATGGCCCGTG AATAGATGAT ATTTTTGGGC TATTGTTGAG 6669 .......... .......... .......... .......... .......... .......... 513 AACAAAATTG CTGTACGCTG CAGTAACGTG CATTAGTTAT ATATTTGATG ACTTCTGGCT 6609 .......... .......... .......... .......... .......... .......... 513 TAGTTTATAG TTTATAGTTT ATACTATAAT GTTTAGCCAA CTTGGCTGGA TAAAGTGACT 6549 .......... .......... .......... .......... .......... .......... 513 GCGTCACTCA GTTTGGATGG GATAATGGGT GCTATTACCA ATCTTGGTAA AATGGTCAGG 6489 .......... .......... .......... .......... .......... .......... 513 TTTGATATAT TATATATCCT TTGACTGAAG TTTGTCATTG TACATCATCA TTCAAAACAT 6429 .......... .......... .......... .......... .......... .......... 513 AGTTCCATCC GTTTTAGTCA GAAAACTATT TTTCTCTTCT GGTGCCATAG TAATATAATA 6369 .......... .......... .......... .......... .......... .......... 513 GAACAAGAAA GAATTACAGA AAGTTAAAAA GTATTAACAT AAAAAAAAAG TAGATGAAAA 6309 .......... .......... .......... .......... .......... .......... 513 ATTTGTTGGG GTAACGCATA AAGTAAAAAA AATAGCAGGG AAAAATAAAA TGGAGCAGAA 6249 .......... .......... .......... .......... .......... .......... 513 AAAGAGAAAG GAGGGAAGTC TAAAAGAAAT CCTTGGTTTG GGGTTGAGGA AAGACGGTAA 6189 .......... .......... .......... .......... .......... .......... 513 TGTTTCAACC CAGGTGTTGT AGAAGAGTAG ATTAATTATT TTTTGGGGCA TTTGTTGGAG 6129 .......... .......... .......... .......... .......... .......... 513 AGGTAAGTGG GAGCTCTGTT GGACGATGAG GAGAAGATAG CAGGAAATAA GTGAGCTTAT 6069 .......... .......... .......... .......... .......... .......... 513 TTTTTCATCT TCCATGTTGA ATAACATCCT GTGCTTACCT GTGTATTCCT CACTCTTTGA 6009 .......... .......... .......... .......... .......... .......... 513 ATAAATGTTG ATGTGTGTCT GGATGTAATG CCTGGATTAT GTCCCGCCTG GTGATAGTGG 5949 .......... .......... .......... .......... .......... .......... 513 TCCTCCATAA CAAGATAGTA CTGCTATCTG GCTTATTGCA TGTTACCAAC CTTGAACAAG 5889 .......... .......... .......... .......... .......... .......... 513 CCAAGATAAT GAAGAGGCTA ATCTAATAAG TGGGCTTAAC AATGGATACA CCAAGAATAG 5829 .......... .......... .......... .......... .......... .......... 513 GAGTGGGTCT GGCTCTAATA TCATACCATG TTAAGTGGAA AATTTGGGCC CAACTCAACT 5769 .......... .......... .......... .......... .......... .......... 513 CCAAAAGGTA CCTTAGTGCC AGATCATGCA ATAAGATCTC TTTTTCCCTC TTTCCTTCAT 5709 .......... .......... .......... .......... .......... .......... 513 GTTTCAGATC ATGCTAACTC AACTCCAAAA GGTAGCTTAG TGCAAGATCA TGCAATAAGA 5649 .......... .......... .......... .......... .......... .......... 513 TCTCTTTTTA CCTCTTTCCT TTAATGTTTC AGATTATGCA ATAAGATAAC TTTCCTTCTT 5589 .......... .......... .......... .......... .......... .......... 513 TCCTTTAATT GTTTCAGTTA GCTTGCTATT AGGTTTTACA TAGAAAATTG TCATCATTTT 5529 .......... .......... .......... .......... .......... .......... 513 TGTCAGGACA AATATACTAG AGCCTTTATA ATTAAGACAG TTAATAGACA GATGGCAAAG 5469 .......... .......... .......... .......... .......... .......... 513 ATGGTTCGAC TCTAAAATAG GAATTTAATA GTTGATTTTA CCCTATATAA ATGGAATTGA 5409 .......... .......... .......... .......... .......... .......... 513 AAATAGTGAT TGCCACTCAA AATCTAGGGT CAGCTGAGAT TTATTGGATA TTTCAATTTT 5349 .......... .......... .......... .......... .......... .......... 513 GTGGTTGTGA CTAAAATGGC CCGAATGTAT GGCTGAGCAG TTTAAAGACC TGTGGAAATA 5289 .......... .......... .......... .......... .......... .......... 513 ATGTGCTTCA GATTTTTTTT ATTCTGTAAT CAAATGTGGT GCTGCCTTAT CTTTGAAATA 5229 .......... .......... .......... .......... .......... .......... 513 ATTTCTTGTG CTTCTACTCA ATTTTTGTTG TGGCAAGCAC CCTACTCTTG CTATGACTTG 5169 .......... .......... .......... .......... .......... .......... 513 TGAATTTACT CTCCTTAAGT GATTCTTTTG TGGTGGATGG TGCGCTAACA ATCAGTTTTG 5109 .......... .......... .......... .......... .......... .......... 513 CTCTTCAGGG ACCACTGGGA TTGTGGATTA TACCAACTAT GA 5067 || |||||||||| |||||||||| |||||||||| || ........GG ACCACTGGGA TTGTGGATTA TACCAACTAT GA 547 hqPGS_C06HBa0024L21.1-4-_SGN-E205241+ (9248 9198,8412 8324,8236 8171,8073 7999,7620 7494,7412 7366,7258 7201,5100 5067) ******************************************************************************** EST sequence 23 +strand 535 n (File: SGN-E349024+) 1 AAAACCCTAA CCTTCAAAAT TCTCCTTCTC TAAGCGCTCT GTGTTTTCAT CCTTCATCAA 61 TCTTCTAGTA AAGGAACAAT GAGTCGTTCA AGTAGGACGA TTTATGTTGG TAATCTTCCT 121 GGTGATATTC GTGAGCGAGA AGTGGAGGAT CTGTTCTACA AGTATGGCCC GATAGCACAT 181 ATTGATCTGA AAATTCCACC AAGACCCCCA GGTTATGCTT TTGTTGAGTT TGAAGAGGCA 241 CGCGATGCTG AGGATGCTAT TCGTGGGCGC GATGGCTATG AATTTGATGG GCATCGTTTG 301 AGGGTTGAGC TTGCACATGG TGGGCGTGGT AACTCATCGT CAGATCGTTA TAATAGTGGC 361 AATAATAGTG GCCATAATGG TGGTCGTAAT AATCACAAAT TTGGAGCGCC CAAACGTACC 421 GAGTATCGAG TTTTAGTTAC CGGATTGCCC CATTCAGCAT CCTGGCAGGA TCTCAAGGAT 481 CATATGCGTC GAGCTGGGGA TGTTTGTTTC TCACAAGTTT TCCGTGAGGG GAGTG Predicted gene structure (within gDNA segment 9870 to 6591): Exon 1 9270 9198 ( 73 n); cDNA 1 73 ( 73 n); score: 1.000 Intron 1 9197 8413 ( 785 n); Pd: 0.980 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 2 8412 8324 ( 89 n); cDNA 74 162 ( 89 n); score: 1.000 Intron 2 8323 8237 ( 87 n); Pd: 1.000 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 3 8236 8171 ( 66 n); cDNA 163 228 ( 66 n); score: 1.000 Intron 3 8170 8074 ( 97 n); Pd: 0.999 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 4 8073 7999 ( 75 n); cDNA 229 303 ( 75 n); score: 1.000 Intron 4 7998 7621 ( 378 n); Pd: 0.996 (s: 1.00), Pa: 0.996 (s: 1.00) Exon 5 7620 7494 ( 127 n); cDNA 304 430 ( 127 n); score: 1.000 Intron 5 7493 7413 ( 81 n); Pd: 0.994 (s: 1.00), Pa: 0.994 (s: 1.00) Exon 6 7412 7366 ( 47 n); cDNA 431 477 ( 47 n); score: 1.000 Intron 6 7365 7259 ( 107 n); Pd: 0.700 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 7 7258 7201 ( 58 n); cDNA 478 535 ( 58 n); score: 1.000 MATCH C06HBa0024L21.1-4- SGN-E349024+ 1.000 535 1.000 C PGS_C06HBa0024L21.1-4-_SGN-E349024+ (9270 9198,8412 8324,8236 8171,8073 7999,7620 7494,7412 7366,7258 7201) Alignment (genomic DNA sequence = upper lines): AAAACCCTAA CCTTCAAAAT TCTCCTTCTC TAAGCGCTCT GTGTTTTCAT CCTTCATCAA 9211 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAACCCTAA CCTTCAAAAT TCTCCTTCTC TAAGCGCTCT GTGTTTTCAT CCTTCATCAA 60 TCTTCTAGTA AAGGTACGTT CCTTCGGTCT TTGTTAATGG AGGTCCGTTT AATCGGCATC 9151 |||||||||| ||| TCTTCTAGTA AAG....... .......... .......... .......... .......... 73 TATCAAACGA AATAGCTAAC AAGATCTGTT TTTTAATTTT AGTTTCTTCC GTTTTGCTCA 9091 .......... .......... .......... .......... .......... .......... 73 TTTTACCCAG CGAAAAATGT ATTTCAATTC ACTTAAAACG TTGTTCAGAG GCGGATCTAG 9031 .......... .......... .......... .......... .......... .......... 73 CATAGAATCA GTCTACATAC AGGAAAAATA GCAATAAAGT ATCTATACAT AATTTGTGTA 8971 .......... .......... .......... .......... .......... .......... 73 TGTAATTGTG TATCCATTAT TAGTGTGTTC TGTATGCAGG AAATGTTTTT TTTCGTCTTG 8911 .......... .......... .......... .......... .......... .......... 73 GAAAATAACC GGGTTTCTTA CTTAGTTGTG TTCGGTAGGC AAGCGAAAAA TATTAGTACA 8851 .......... .......... .......... .......... .......... .......... 73 ATTATTTGTA TGTAATCTAG ACAAATACTC TTGAGTTGGG TGGTGGGGAT GGTGGCTAAG 8791 .......... .......... .......... .......... .......... .......... 73 AGTGTGGTGG TGAAGATGAG GTTGGTTGGA GGGTGGGGAG AACACAATCA ATGTGGAATT 8731 .......... .......... .......... .......... .......... .......... 73 TTATTTGTTG AACCTGTTTT CACTACTTCC ATTGAGGAAG TCAAATTTTT TTATTTTGAA 8671 .......... .......... .......... .......... .......... .......... 73 GCAACTTAAT TTCCTAGAGA AGATGTTTTC CATAAATTTT ACCAACCATG AGAAAACTTG 8611 .......... .......... .......... .......... .......... .......... 73 GAAACATTTT TCTGGAAAAT GGTTTCATTC GTATCTAACA CACCCTATAT GTATGTTTGT 8551 .......... .......... .......... .......... .......... .......... 73 TACTTTGTTT ATGTATTTGT GTGCGAATCA AGTTGATTGC TCAAGTTGTG TTTTTGTGAC 8491 .......... .......... .......... .......... .......... .......... 73 TTAAGTTCTT CATGAATTTT ATCCATTTTT GTTTCTCAGG TGGGTTTTGA TTGTATTTTT 8431 .......... .......... .......... .......... .......... .......... 73 TTGTTGAATT ATTTTTAGGA ACAATGAGTC GTTCAAGTAG GACGATTTAT GTTGGTAATC 8371 || |||||||||| |||||||||| |||||||||| |||||||||| .......... ........GA ACAATGAGTC GTTCAAGTAG GACGATTTAT GTTGGTAATC 115 TTCCTGGTGA TATTCGTGAG CGAGAAGTGG AGGATCTGTT CTACAAGGTA CTTGTATAAC 8311 |||||||||| |||||||||| |||||||||| |||||||||| ||||||| TTCCTGGTGA TATTCGTGAG CGAGAAGTGG AGGATCTGTT CTACAAG... .......... 162 ACTTAGCTTC ATACTTTAGT TGGATGTCAT TTACTATGCT CATAAACTTA AATGTGTGTG 8251 .......... .......... .......... .......... .......... .......... 162 GCGTATAATT GTAGTATGGC CCGATAGCAC ATATTGATCT GAAAATTCCA CCAAGACCCC 8191 |||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ....TATGGC CCGATAGCAC ATATTGATCT GAAAATTCCA CCAAGACCCC 208 CAGGTTATGC TTTTGTTGAG GTAAGTTTTG ACTGCATTGG CTAAAATGAA TTTCATTGGA 8131 |||||||||| |||||||||| CAGGTTATGC TTTTGTTGAG .......... .......... .......... .......... 228 TATTTCCTTC TCAATTGTTA ACCTATTTTG ACATTGTTTT GTTGGAACTA AACACAGTTT 8071 ||| .......... .......... .......... .......... .......... .......TTT 231 GAAGAGGCAC GCGATGCTGA GGATGCTATT CGTGGGCGCG ATGGCTATGA ATTTGATGGG 8011 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAGAGGCAC GCGATGCTGA GGATGCTATT CGTGGGCGCG ATGGCTATGA ATTTGATGGG 291 CATCGTTTGA GGGTTAGTAA AATCTTAACA GCATATAGGA TACACACACA TGAATCAATT 7951 |||||||||| || CATCGTTTGA GG........ .......... .......... .......... .......... 303 GTATCCTCTG TTTACTCTGA GAAGTATGAT TGACTTGCAT TTTTGAATCA GGGTTTCCAA 7891 .......... .......... .......... .......... .......... .......... 303 TTCTTGTATT AATTGCATTT CGTTGACCCT AGCATTTCAC CTAAACCATT ATGTTTCTTT 7831 .......... .......... .......... .......... .......... .......... 303 ATTAAATGCT TGTCCCAAAT TAGTTGGGAT CAGTTTTATA AATTGTCTGT AACCATCCTA 7771 .......... .......... .......... .......... .......... .......... 303 CTTTATCCAG GCGTATTTTT CTTTTCAAGC TTAGTTTGTC TTTCAAGGCA AATTAACATG 7711 .......... .......... .......... .......... .......... .......... 303 TCTAATACAT ATAAGACACC TAAATGCTAA ATAGTTTTCT TTTTGAGGTG CTTAAGATCT 7651 .......... .......... .......... .......... .......... .......... 303 AAGCCTACTG AAACTGTTAC ATGTATGCAG GTTGAGCTTG CACATGGTGG GCGTGGTAAC 7591 |||||||||| |||||||||| |||||||||| .......... .......... .......... GTTGAGCTTG CACATGGTGG GCGTGGTAAC 333 TCATCGTCAG ATCGTTATAA TAGTGGCAAT AATAGTGGCC ATAATGGTGG TCGTAATAAT 7531 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCATCGTCAG ATCGTTATAA TAGTGGCAAT AATAGTGGCC ATAATGGTGG TCGTAATAAT 393 CACAAATTTG GAGCGCCCAA ACGTACCGAG TATCGAGGCA CGTATGTTAT TAATGTGCAC 7471 |||||||||| |||||||||| |||||||||| ||||||| CACAAATTTG GAGCGCCCAA ACGTACCGAG TATCGAG... .......... .......... 430 ATAATTTTCT TTATTGCATT TCATGCCTTC TTGATCTAAT TCACTTACTC ATTTTCAGTT 7411 || .......... .......... .......... .......... .......... ........TT 432 TTAGTTACCG GATTGCCCCA TTCAGCATCC TGGCAGGATC TCAAGGTGAG TGGTGTCTGT 7351 |||||||||| |||||||||| |||||||||| |||||||||| ||||| TTAGTTACCG GATTGCCCCA TTCAGCATCC TGGCAGGATC TCAAG..... .......... 477 GTGGTAAATT ATAAGGACCG TGGCTAAAAG TGATCTTCCT TTTCTGGTAT CTTCTAGCTT 7291 .......... .......... .......... .......... .......... .......... 477 CTGAATATTG GTATTCTATG TTTCTTATGT AGGATCATAT GCGTCGAGCT GGGGATGTTT 7231 |||||||| |||||||||| |||||||||| .......... .......... .......... ..GATCATAT GCGTCGAGCT GGGGATGTTT 505 GTTTCTCACA AGTTTTCCGT GAGGGGAGTG 7201 |||||||||| |||||||||| |||||||||| GTTTCTCACA AGTTTTCCGT GAGGGGAGTG 535 hqPGS_C06HBa0024L21.1-4-_SGN-E349024+ (9270 9198,8412 8324,8236 8171,8073 7999,7620 7494,7412 7366,7258 7201) ******************************************************************************** EST sequence 57 +strand 478 n (File: SGN-E331080+) 1 TTTTCATCCT TCATCAATCT TCTAGTAAAG GAACAATGAG TCGTTCAAGT AGGACGATTT 61 ATGTTGGTAA TCTTCCTGGT GATATTCGTG AGCGAGAAGT GGAGGATCTG TTCTACAAGT 121 ATGGCCCGAT AGCACATATT GATCTGAAAA TTCCACCAAG ACCCCCAGGT TATGCTTTTG 181 TTGAGTTTGA AGAGGCACGC GATGCTGAGG ATGCTATTCG TGGGCGCGAT GGCTATGAAT 241 TTGATGGGCA TCGTTTGAGG GTTGAGCTTG CACATGGTGG GCGTGGTAAC TCATCGTCAG 301 ATCGTTATAA TAGTGGCAAT AATAGTGGCC ATAATGGTGG TCGTAATAAT CACAAATTTG 361 GAGCGCCCAA ACGTACCGAG TATCGAGTTT TAGTTACCGG ATTGCCCCAT TCAGCATCCT 421 GGCAGGATCT CAAGGATCAT ATGCGTCGAG CTGGGGATGT TTGTTTCTCA CAAGTTTT Predicted gene structure (within gDNA segment 9827 to 6605): Exon 1 9227 9198 ( 30 n); cDNA 1 30 ( 30 n); score: 1.000 Intron 1 9197 8413 ( 785 n); Pd: 0.980 (s: 0), Pa: 0.998 (s: 1.00) Exon 2 8412 8324 ( 89 n); cDNA 31 119 ( 89 n); score: 1.000 Intron 2 8323 8237 ( 87 n); Pd: 1.000 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 3 8236 8171 ( 66 n); cDNA 120 185 ( 66 n); score: 1.000 Intron 3 8170 8074 ( 97 n); Pd: 0.999 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 4 8073 7999 ( 75 n); cDNA 186 260 ( 75 n); score: 1.000 Intron 4 7998 7621 ( 378 n); Pd: 0.996 (s: 1.00), Pa: 0.996 (s: 1.00) Exon 5 7620 7494 ( 127 n); cDNA 261 387 ( 127 n); score: 1.000 Intron 5 7493 7413 ( 81 n); Pd: 0.994 (s: 1.00), Pa: 0.994 (s: 1.00) Exon 6 7412 7366 ( 47 n); cDNA 388 434 ( 47 n); score: 1.000 Intron 6 7365 7259 ( 107 n); Pd: 0.700 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 7 7258 7215 ( 44 n); cDNA 435 478 ( 44 n); score: 1.000 MATCH C06HBa0024L21.1-4- SGN-E331080+ 1.000 478 1.000 C PGS_C06HBa0024L21.1-4-_SGN-E331080+ (9227 9198,8412 8324,8236 8171,8073 7999,7620 7494,7412 7366,7258 7215) Alignment (genomic DNA sequence = upper lines): TTTTCATCCT TCATCAATCT TCTAGTAAAG GTACGTTCCT TCGGTCTTTG TTAATGGAGG 9168 |||||||||| |||||||||| |||||||||| TTTTCATCCT TCATCAATCT TCTAGTAAAG .......... .......... .......... 30 TCCGTTTAAT CGGCATCTAT CAAACGAAAT AGCTAACAAG ATCTGTTTTT TAATTTTAGT 9108 .......... .......... .......... .......... .......... .......... 30 TTCTTCCGTT TTGCTCATTT TACCCAGCGA AAAATGTATT TCAATTCACT TAAAACGTTG 9048 .......... .......... .......... .......... .......... .......... 30 TTCAGAGGCG GATCTAGCAT AGAATCAGTC TACATACAGG AAAAATAGCA ATAAAGTATC 8988 .......... .......... .......... .......... .......... .......... 30 TATACATAAT TTGTGTATGT AATTGTGTAT CCATTATTAG TGTGTTCTGT ATGCAGGAAA 8928 .......... .......... .......... .......... .......... .......... 30 TGTTTTTTTT CGTCTTGGAA AATAACCGGG TTTCTTACTT AGTTGTGTTC GGTAGGCAAG 8868 .......... .......... .......... .......... .......... .......... 30 CGAAAAATAT TAGTACAATT ATTTGTATGT AATCTAGACA AATACTCTTG AGTTGGGTGG 8808 .......... .......... .......... .......... .......... .......... 30 TGGGGATGGT GGCTAAGAGT GTGGTGGTGA AGATGAGGTT GGTTGGAGGG TGGGGAGAAC 8748 .......... .......... .......... .......... .......... .......... 30 ACAATCAATG TGGAATTTTA TTTGTTGAAC CTGTTTTCAC TACTTCCATT GAGGAAGTCA 8688 .......... .......... .......... .......... .......... .......... 30 AATTTTTTTA TTTTGAAGCA ACTTAATTTC CTAGAGAAGA TGTTTTCCAT AAATTTTACC 8628 .......... .......... .......... .......... .......... .......... 30 AACCATGAGA AAACTTGGAA ACATTTTTCT GGAAAATGGT TTCATTCGTA TCTAACACAC 8568 .......... .......... .......... .......... .......... .......... 30 CCTATATGTA TGTTTGTTAC TTTGTTTATG TATTTGTGTG CGAATCAAGT TGATTGCTCA 8508 .......... .......... .......... .......... .......... .......... 30 AGTTGTGTTT TTGTGACTTA AGTTCTTCAT GAATTTTATC CATTTTTGTT TCTCAGGTGG 8448 .......... .......... .......... .......... .......... .......... 30 GTTTTGATTG TATTTTTTTG TTGAATTATT TTTAGGAACA ATGAGTCGTT CAAGTAGGAC 8388 ||||| |||||||||| |||||||||| .......... .......... .......... .....GAACA ATGAGTCGTT CAAGTAGGAC 55 GATTTATGTT GGTAATCTTC CTGGTGATAT TCGTGAGCGA GAAGTGGAGG ATCTGTTCTA 8328 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATTTATGTT GGTAATCTTC CTGGTGATAT TCGTGAGCGA GAAGTGGAGG ATCTGTTCTA 115 CAAGGTACTT GTATAACACT TAGCTTCATA CTTTAGTTGG ATGTCATTTA CTATGCTCAT 8268 |||| CAAG...... .......... .......... .......... .......... .......... 119 AAACTTAAAT GTGTGTGGCG TATAATTGTA GTATGGCCCG ATAGCACATA TTGATCTGAA 8208 ||||||||| |||||||||| |||||||||| .......... .......... .......... .TATGGCCCG ATAGCACATA TTGATCTGAA 148 AATTCCACCA AGACCCCCAG GTTATGCTTT TGTTGAGGTA AGTTTTGACT GCATTGGCTA 8148 |||||||||| |||||||||| |||||||||| ||||||| AATTCCACCA AGACCCCCAG GTTATGCTTT TGTTGAG... .......... .......... 185 AAATGAATTT CATTGGATAT TTCCTTCTCA ATTGTTAACC TATTTTGACA TTGTTTTGTT 8088 .......... .......... .......... .......... .......... .......... 185 GGAACTAAAC ACAGTTTGAA GAGGCACGCG ATGCTGAGGA TGCTATTCGT GGGCGCGATG 8028 |||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ....TTTGAA GAGGCACGCG ATGCTGAGGA TGCTATTCGT GGGCGCGATG 231 GCTATGAATT TGATGGGCAT CGTTTGAGGG TTAGTAAAAT CTTAACAGCA TATAGGATAC 7968 |||||||||| |||||||||| ||||||||| GCTATGAATT TGATGGGCAT CGTTTGAGG. .......... .......... .......... 260 ACACACATGA ATCAATTGTA TCCTCTGTTT ACTCTGAGAA GTATGATTGA CTTGCATTTT 7908 .......... .......... .......... .......... .......... .......... 260 TGAATCAGGG TTTCCAATTC TTGTATTAAT TGCATTTCGT TGACCCTAGC ATTTCACCTA 7848 .......... .......... .......... .......... .......... .......... 260 AACCATTATG TTTCTTTATT AAATGCTTGT CCCAAATTAG TTGGGATCAG TTTTATAAAT 7788 .......... .......... .......... .......... .......... .......... 260 TGTCTGTAAC CATCCTACTT TATCCAGGCG TATTTTTCTT TTCAAGCTTA GTTTGTCTTT 7728 .......... .......... .......... .......... .......... .......... 260 CAAGGCAAAT TAACATGTCT AATACATATA AGACACCTAA ATGCTAAATA GTTTTCTTTT 7668 .......... .......... .......... .......... .......... .......... 260 TGAGGTGCTT AAGATCTAAG CCTACTGAAA CTGTTACATG TATGCAGGTT GAGCTTGCAC 7608 ||| |||||||||| .......... .......... .......... .......... .......GTT GAGCTTGCAC 273 ATGGTGGGCG TGGTAACTCA TCGTCAGATC GTTATAATAG TGGCAATAAT AGTGGCCATA 7548 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGGTGGGCG TGGTAACTCA TCGTCAGATC GTTATAATAG TGGCAATAAT AGTGGCCATA 333 ATGGTGGTCG TAATAATCAC AAATTTGGAG CGCCCAAACG TACCGAGTAT CGAGGCACGT 7488 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||| ATGGTGGTCG TAATAATCAC AAATTTGGAG CGCCCAAACG TACCGAGTAT CGAG...... 387 ATGTTATTAA TGTGCACATA ATTTTCTTTA TTGCATTTCA TGCCTTCTTG ATCTAATTCA 7428 .......... .......... .......... .......... .......... .......... 387 CTTACTCATT TTCAGTTTTA GTTACCGGAT TGCCCCATTC AGCATCCTGG CAGGATCTCA 7368 ||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... .....TTTTA GTTACCGGAT TGCCCCATTC AGCATCCTGG CAGGATCTCA 432 AGGTGAGTGG TGTCTGTGTG GTAAATTATA AGGACCGTGG CTAAAAGTGA TCTTCCTTTT 7308 || AG........ .......... .......... .......... .......... .......... 434 CTGGTATCTT CTAGCTTCTG AATATTGGTA TTCTATGTTT CTTATGTAGG ATCATATGCG 7248 | |||||||||| .......... .......... .......... .......... .........G ATCATATGCG 445 TCGAGCTGGG GATGTTTGTT TCTCACAAGT TTT 7215 |||||||||| |||||||||| |||||||||| ||| TCGAGCTGGG GATGTTTGTT TCTCACAAGT TTT 478 hqPGS_C06HBa0024L21.1-4-_SGN-E331080+ (9227 9198,8412 8324,8236 8171,8073 7999,7620 7494,7412 7366,7258 7215) ******************************************************************************** EST sequence 45 +strand 489 n (File: SGN-E207746+) 1 TTCAAAATTC TCCTTCTCTA AGCGCTCTGT GTTTTCATCC TTCATCAATC TTCTAGTAAA 61 GGAACAATGA GTCGTTCAAG TAGGACGATT TATGTTGGTA ATCTTCCTGG TGATATTCGT 121 GAGCGAGAAG TGGAGGATCT GTTCTACAAG TATGGCCCGA TAGCACATAT TGATCTGAAA 181 ATTCCACCAA GACCCCCAGG TTATGCTTTT GTTGAGTTTG AAGAGGCACG CGATGCTGAG 241 GATGCTATTC GTGGGCGCGA TGGCTATGAA TTTGATGGGC ATCGTTTGAG GGTTGAGCTT 301 GCACATGGTG GGCGTGGTAA CTCATCGTCA GATCGTTATA ATAGTGGCAA TAATAGTGGC 361 CATAATGGTG GTCGTAATAA TCACAAATTT GGAGCGCCCA AACGTACCGA GTATCGAGTT 421 TTAGTTACCG GATTGCCCCA TTCAGCATCC TGGCAGGATC TCAAGGATCA TATGCGTCGA 481 GCTGGGGAT Predicted gene structure (within gDNA segment 9858 to 6525): Exon 1 9258 9198 ( 61 n); cDNA 1 61 ( 61 n); score: 1.000 Intron 1 9197 8413 ( 785 n); Pd: 0.980 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 2 8412 8324 ( 89 n); cDNA 62 150 ( 89 n); score: 1.000 Intron 2 8323 8237 ( 87 n); Pd: 1.000 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 3 8236 8171 ( 66 n); cDNA 151 216 ( 66 n); score: 1.000 Intron 3 8170 8074 ( 97 n); Pd: 0.999 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 4 8073 7999 ( 75 n); cDNA 217 291 ( 75 n); score: 1.000 Intron 4 7998 7621 ( 378 n); Pd: 0.996 (s: 1.00), Pa: 0.996 (s: 1.00) Exon 5 7620 7494 ( 127 n); cDNA 292 418 ( 127 n); score: 1.000 Intron 5 7493 7413 ( 81 n); Pd: 0.994 (s: 1.00), Pa: 0.994 (s: 1.00) Exon 6 7412 7366 ( 47 n); cDNA 419 465 ( 47 n); score: 1.000 Intron 6 7365 7259 ( 107 n); Pd: 0.700 (s: 1.00), Pa: 0.998 (s: 0) Exon 7 7258 7235 ( 24 n); cDNA 466 489 ( 24 n); score: 1.000 MATCH C06HBa0024L21.1-4- SGN-E207746+ 1.000 489 1.000 C PGS_C06HBa0024L21.1-4-_SGN-E207746+ (9258 9198,8412 8324,8236 8171,8073 7999,7620 7494,7412 7366,7258 7235) Alignment (genomic DNA sequence = upper lines): TTCAAAATTC TCCTTCTCTA AGCGCTCTGT GTTTTCATCC TTCATCAATC TTCTAGTAAA 9199 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCAAAATTC TCCTTCTCTA AGCGCTCTGT GTTTTCATCC TTCATCAATC TTCTAGTAAA 60 GGTACGTTCC TTCGGTCTTT GTTAATGGAG GTCCGTTTAA TCGGCATCTA TCAAACGAAA 9139 | G......... .......... .......... .......... .......... .......... 61 TAGCTAACAA GATCTGTTTT TTAATTTTAG TTTCTTCCGT TTTGCTCATT TTACCCAGCG 9079 .......... .......... .......... .......... .......... .......... 61 AAAAATGTAT TTCAATTCAC TTAAAACGTT GTTCAGAGGC GGATCTAGCA TAGAATCAGT 9019 .......... .......... .......... .......... .......... .......... 61 CTACATACAG GAAAAATAGC AATAAAGTAT CTATACATAA TTTGTGTATG TAATTGTGTA 8959 .......... .......... .......... .......... .......... .......... 61 TCCATTATTA GTGTGTTCTG TATGCAGGAA ATGTTTTTTT TCGTCTTGGA AAATAACCGG 8899 .......... .......... .......... .......... .......... .......... 61 GTTTCTTACT TAGTTGTGTT CGGTAGGCAA GCGAAAAATA TTAGTACAAT TATTTGTATG 8839 .......... .......... .......... .......... .......... .......... 61 TAATCTAGAC AAATACTCTT GAGTTGGGTG GTGGGGATGG TGGCTAAGAG TGTGGTGGTG 8779 .......... .......... .......... .......... .......... .......... 61 AAGATGAGGT TGGTTGGAGG GTGGGGAGAA CACAATCAAT GTGGAATTTT ATTTGTTGAA 8719 .......... .......... .......... .......... .......... .......... 61 CCTGTTTTCA CTACTTCCAT TGAGGAAGTC AAATTTTTTT ATTTTGAAGC AACTTAATTT 8659 .......... .......... .......... .......... .......... .......... 61 CCTAGAGAAG ATGTTTTCCA TAAATTTTAC CAACCATGAG AAAACTTGGA AACATTTTTC 8599 .......... .......... .......... .......... .......... .......... 61 TGGAAAATGG TTTCATTCGT ATCTAACACA CCCTATATGT ATGTTTGTTA CTTTGTTTAT 8539 .......... .......... .......... .......... .......... .......... 61 GTATTTGTGT GCGAATCAAG TTGATTGCTC AAGTTGTGTT TTTGTGACTT AAGTTCTTCA 8479 .......... .......... .......... .......... .......... .......... 61 TGAATTTTAT CCATTTTTGT TTCTCAGGTG GGTTTTGATT GTATTTTTTT GTTGAATTAT 8419 .......... .......... .......... .......... .......... .......... 61 TTTTAGGAAC AATGAGTCGT TCAAGTAGGA CGATTTATGT TGGTAATCTT CCTGGTGATA 8359 |||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ......GAAC AATGAGTCGT TCAAGTAGGA CGATTTATGT TGGTAATCTT CCTGGTGATA 115 TTCGTGAGCG AGAAGTGGAG GATCTGTTCT ACAAGGTACT TGTATAACAC TTAGCTTCAT 8299 |||||||||| |||||||||| |||||||||| ||||| TTCGTGAGCG AGAAGTGGAG GATCTGTTCT ACAAG..... .......... .......... 150 ACTTTAGTTG GATGTCATTT ACTATGCTCA TAAACTTAAA TGTGTGTGGC GTATAATTGT 8239 .......... .......... .......... .......... .......... .......... 150 AGTATGGCCC GATAGCACAT ATTGATCTGA AAATTCCACC AAGACCCCCA GGTTATGCTT 8179 |||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ..TATGGCCC GATAGCACAT ATTGATCTGA AAATTCCACC AAGACCCCCA GGTTATGCTT 208 TTGTTGAGGT AAGTTTTGAC TGCATTGGCT AAAATGAATT TCATTGGATA TTTCCTTCTC 8119 |||||||| TTGTTGAG.. .......... .......... .......... .......... .......... 216 AATTGTTAAC CTATTTTGAC ATTGTTTTGT TGGAACTAAA CACAGTTTGA AGAGGCACGC 8059 ||||| |||||||||| .......... .......... .......... .......... .....TTTGA AGAGGCACGC 231 GATGCTGAGG ATGCTATTCG TGGGCGCGAT GGCTATGAAT TTGATGGGCA TCGTTTGAGG 7999 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATGCTGAGG ATGCTATTCG TGGGCGCGAT GGCTATGAAT TTGATGGGCA TCGTTTGAGG 291 GTTAGTAAAA TCTTAACAGC ATATAGGATA CACACACATG AATCAATTGT ATCCTCTGTT 7939 .......... .......... .......... .......... .......... .......... 291 TACTCTGAGA AGTATGATTG ACTTGCATTT TTGAATCAGG GTTTCCAATT CTTGTATTAA 7879 .......... .......... .......... .......... .......... .......... 291 TTGCATTTCG TTGACCCTAG CATTTCACCT AAACCATTAT GTTTCTTTAT TAAATGCTTG 7819 .......... .......... .......... .......... .......... .......... 291 TCCCAAATTA GTTGGGATCA GTTTTATAAA TTGTCTGTAA CCATCCTACT TTATCCAGGC 7759 .......... .......... .......... .......... .......... .......... 291 GTATTTTTCT TTTCAAGCTT AGTTTGTCTT TCAAGGCAAA TTAACATGTC TAATACATAT 7699 .......... .......... .......... .......... .......... .......... 291 AAGACACCTA AATGCTAAAT AGTTTTCTTT TTGAGGTGCT TAAGATCTAA GCCTACTGAA 7639 .......... .......... .......... .......... .......... .......... 291 ACTGTTACAT GTATGCAGGT TGAGCTTGCA CATGGTGGGC GTGGTAACTC ATCGTCAGAT 7579 || |||||||||| |||||||||| |||||||||| |||||||||| .......... ........GT TGAGCTTGCA CATGGTGGGC GTGGTAACTC ATCGTCAGAT 333 CGTTATAATA GTGGCAATAA TAGTGGCCAT AATGGTGGTC GTAATAATCA CAAATTTGGA 7519 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGTTATAATA GTGGCAATAA TAGTGGCCAT AATGGTGGTC GTAATAATCA CAAATTTGGA 393 GCGCCCAAAC GTACCGAGTA TCGAGGCACG TATGTTATTA ATGTGCACAT AATTTTCTTT 7459 |||||||||| |||||||||| ||||| GCGCCCAAAC GTACCGAGTA TCGAG..... .......... .......... .......... 418 ATTGCATTTC ATGCCTTCTT GATCTAATTC ACTTACTCAT TTTCAGTTTT AGTTACCGGA 7399 |||| |||||||||| .......... .......... .......... .......... ......TTTT AGTTACCGGA 432 TTGCCCCATT CAGCATCCTG GCAGGATCTC AAGGTGAGTG GTGTCTGTGT GGTAAATTAT 7339 |||||||||| |||||||||| |||||||||| ||| TTGCCCCATT CAGCATCCTG GCAGGATCTC AAG....... .......... .......... 465 AAGGACCGTG GCTAAAAGTG ATCTTCCTTT TCTGGTATCT TCTAGCTTCT GAATATTGGT 7279 .......... .......... .......... .......... .......... .......... 465 ATTCTATGTT TCTTATGTAG GATCATATGC GTCGAGCTGG GGAT 7235 |||||||||| |||||||||| |||| .......... .......... GATCATATGC GTCGAGCTGG GGAT 489 hqPGS_C06HBa0024L21.1-4-_SGN-E207746+ (9258 9198,8412 8324,8236 8171,8073 7999,7620 7494,7412 7366,7258 7235) ******************************************************************************** EST sequence 46 +strand 475 n (File: SGN-E291630+) 1 CAAAATTCTC CTTCTCTAAG CGCTCTGTGT TTTCATCCTT CATCAATCTT CTAGTAAAGG 61 AACAATGAGT CGTTCAAGTA GGACGATTTA TGTTGGTAAT CTTCCTGGTG ATATTCGTGA 121 GCGAGAAGTG GAGGATCTGT TCTACAAGTA TGGCCCGATA GCACATATTG ATCTGAAAAT 181 TCCACCAAGA CCCCCAGGTT ATGCTTTTGT TGAGTTTGAA GAGGCACGCG ATGCTGAGGA 241 TGCTATTCGT GGGCGCGATG GCTATGAATT TGATGGGCAT CGTTTGAGGG TTGAGCTTGC 301 ACATGGTGGG CGTGGTAACT CATCGTCAGA TCGTTATAAT AGTGGCAATA ATAGTGGCCA 361 TAATGGTGGT CGTAATAATC ACAAATTTGG AGCGCCCAAA CGTACCGAGT ATCGAGTTTT 421 AGTTACCGGA TTGCCCCATT CAGCATCCTG GCAGGATCTC AAGGATCATA TGCGT Predicted gene structure (within gDNA segment 9856 to 6645): Exon 1 9256 9198 ( 59 n); cDNA 1 59 ( 59 n); score: 1.000 Intron 1 9197 8413 ( 785 n); Pd: 0.980 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 2 8412 8324 ( 89 n); cDNA 60 148 ( 89 n); score: 1.000 Intron 2 8323 8237 ( 87 n); Pd: 1.000 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 3 8236 8171 ( 66 n); cDNA 149 214 ( 66 n); score: 1.000 Intron 3 8170 8074 ( 97 n); Pd: 0.999 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 4 8073 7999 ( 75 n); cDNA 215 289 ( 75 n); score: 1.000 Intron 4 7998 7621 ( 378 n); Pd: 0.996 (s: 1.00), Pa: 0.996 (s: 1.00) Exon 5 7620 7494 ( 127 n); cDNA 290 416 ( 127 n); score: 1.000 Intron 5 7493 7413 ( 81 n); Pd: 0.994 (s: 1.00), Pa: 0.994 (s: 1.00) Exon 6 7412 7366 ( 47 n); cDNA 417 463 ( 47 n); score: 1.000 Intron 6 7365 7259 ( 107 n); Pd: 0.700 (s: 1.00), Pa: 0.998 (s: 0) Exon 7 7258 7247 ( 12 n); cDNA 464 475 ( 12 n); score: 1.000 MATCH C06HBa0024L21.1-4- SGN-E291630+ 1.000 475 1.000 C PGS_C06HBa0024L21.1-4-_SGN-E291630+ (9256 9198,8412 8324,8236 8171,8073 7999,7620 7494,7412 7366,7258 7247) Alignment (genomic DNA sequence = upper lines): CAAAATTCTC CTTCTCTAAG CGCTCTGTGT TTTCATCCTT CATCAATCTT CTAGTAAAGG 9197 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| CAAAATTCTC CTTCTCTAAG CGCTCTGTGT TTTCATCCTT CATCAATCTT CTAGTAAAG. 59 TACGTTCCTT CGGTCTTTGT TAATGGAGGT CCGTTTAATC GGCATCTATC AAACGAAATA 9137 .......... .......... .......... .......... .......... .......... 59 GCTAACAAGA TCTGTTTTTT AATTTTAGTT TCTTCCGTTT TGCTCATTTT ACCCAGCGAA 9077 .......... .......... .......... .......... .......... .......... 59 AAATGTATTT CAATTCACTT AAAACGTTGT TCAGAGGCGG ATCTAGCATA GAATCAGTCT 9017 .......... .......... .......... .......... .......... .......... 59 ACATACAGGA AAAATAGCAA TAAAGTATCT ATACATAATT TGTGTATGTA ATTGTGTATC 8957 .......... .......... .......... .......... .......... .......... 59 CATTATTAGT GTGTTCTGTA TGCAGGAAAT GTTTTTTTTC GTCTTGGAAA ATAACCGGGT 8897 .......... .......... .......... .......... .......... .......... 59 TTCTTACTTA GTTGTGTTCG GTAGGCAAGC GAAAAATATT AGTACAATTA TTTGTATGTA 8837 .......... .......... .......... .......... .......... .......... 59 ATCTAGACAA ATACTCTTGA GTTGGGTGGT GGGGATGGTG GCTAAGAGTG TGGTGGTGAA 8777 .......... .......... .......... .......... .......... .......... 59 GATGAGGTTG GTTGGAGGGT GGGGAGAACA CAATCAATGT GGAATTTTAT TTGTTGAACC 8717 .......... .......... .......... .......... .......... .......... 59 TGTTTTCACT ACTTCCATTG AGGAAGTCAA ATTTTTTTAT TTTGAAGCAA CTTAATTTCC 8657 .......... .......... .......... .......... .......... .......... 59 TAGAGAAGAT GTTTTCCATA AATTTTACCA ACCATGAGAA AACTTGGAAA CATTTTTCTG 8597 .......... .......... .......... .......... .......... .......... 59 GAAAATGGTT TCATTCGTAT CTAACACACC CTATATGTAT GTTTGTTACT TTGTTTATGT 8537 .......... .......... .......... .......... .......... .......... 59 ATTTGTGTGC GAATCAAGTT GATTGCTCAA GTTGTGTTTT TGTGACTTAA GTTCTTCATG 8477 .......... .......... .......... .......... .......... .......... 59 AATTTTATCC ATTTTTGTTT CTCAGGTGGG TTTTGATTGT ATTTTTTTGT TGAATTATTT 8417 .......... .......... .......... .......... .......... .......... 59 TTAGGAACAA TGAGTCGTTC AAGTAGGACG ATTTATGTTG GTAATCTTCC TGGTGATATT 8357 |||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ....GAACAA TGAGTCGTTC AAGTAGGACG ATTTATGTTG GTAATCTTCC TGGTGATATT 115 CGTGAGCGAG AAGTGGAGGA TCTGTTCTAC AAGGTACTTG TATAACACTT AGCTTCATAC 8297 |||||||||| |||||||||| |||||||||| ||| CGTGAGCGAG AAGTGGAGGA TCTGTTCTAC AAG....... .......... .......... 148 TTTAGTTGGA TGTCATTTAC TATGCTCATA AACTTAAATG TGTGTGGCGT ATAATTGTAG 8237 .......... .......... .......... .......... .......... .......... 148 TATGGCCCGA TAGCACATAT TGATCTGAAA ATTCCACCAA GACCCCCAGG TTATGCTTTT 8177 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATGGCCCGA TAGCACATAT TGATCTGAAA ATTCCACCAA GACCCCCAGG TTATGCTTTT 208 GTTGAGGTAA GTTTTGACTG CATTGGCTAA AATGAATTTC ATTGGATATT TCCTTCTCAA 8117 |||||| GTTGAG.... .......... .......... .......... .......... .......... 214 TTGTTAACCT ATTTTGACAT TGTTTTGTTG GAACTAAACA CAGTTTGAAG AGGCACGCGA 8057 ||||||| |||||||||| .......... .......... .......... .......... ...TTTGAAG AGGCACGCGA 231 TGCTGAGGAT GCTATTCGTG GGCGCGATGG CTATGAATTT GATGGGCATC GTTTGAGGGT 7997 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||| TGCTGAGGAT GCTATTCGTG GGCGCGATGG CTATGAATTT GATGGGCATC GTTTGAGG.. 289 TAGTAAAATC TTAACAGCAT ATAGGATACA CACACATGAA TCAATTGTAT CCTCTGTTTA 7937 .......... .......... .......... .......... .......... .......... 289 CTCTGAGAAG TATGATTGAC TTGCATTTTT GAATCAGGGT TTCCAATTCT TGTATTAATT 7877 .......... .......... .......... .......... .......... .......... 289 GCATTTCGTT GACCCTAGCA TTTCACCTAA ACCATTATGT TTCTTTATTA AATGCTTGTC 7817 .......... .......... .......... .......... .......... .......... 289 CCAAATTAGT TGGGATCAGT TTTATAAATT GTCTGTAACC ATCCTACTTT ATCCAGGCGT 7757 .......... .......... .......... .......... .......... .......... 289 ATTTTTCTTT TCAAGCTTAG TTTGTCTTTC AAGGCAAATT AACATGTCTA ATACATATAA 7697 .......... .......... .......... .......... .......... .......... 289 GACACCTAAA TGCTAAATAG TTTTCTTTTT GAGGTGCTTA AGATCTAAGC CTACTGAAAC 7637 .......... .......... .......... .......... .......... .......... 289 TGTTACATGT ATGCAGGTTG AGCTTGCACA TGGTGGGCGT GGTAACTCAT CGTCAGATCG 7577 |||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ......GTTG AGCTTGCACA TGGTGGGCGT GGTAACTCAT CGTCAGATCG 333 TTATAATAGT GGCAATAATA GTGGCCATAA TGGTGGTCGT AATAATCACA AATTTGGAGC 7517 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTATAATAGT GGCAATAATA GTGGCCATAA TGGTGGTCGT AATAATCACA AATTTGGAGC 393 GCCCAAACGT ACCGAGTATC GAGGCACGTA TGTTATTAAT GTGCACATAA TTTTCTTTAT 7457 |||||||||| |||||||||| ||| GCCCAAACGT ACCGAGTATC GAG....... .......... .......... .......... 416 TGCATTTCAT GCCTTCTTGA TCTAATTCAC TTACTCATTT TCAGTTTTAG TTACCGGATT 7397 |||||| |||||||||| .......... .......... .......... .......... ....TTTTAG TTACCGGATT 432 GCCCCATTCA GCATCCTGGC AGGATCTCAA GGTGAGTGGT GTCTGTGTGG TAAATTATAA 7337 |||||||||| |||||||||| |||||||||| | GCCCCATTCA GCATCCTGGC AGGATCTCAA G......... .......... .......... 463 GGACCGTGGC TAAAAGTGAT CTTCCTTTTC TGGTATCTTC TAGCTTCTGA ATATTGGTAT 7277 .......... .......... .......... .......... .......... .......... 463 TCTATGTTTC TTATGTAGGA TCATATGCGT 7247 || |||||||||| .......... ........GA TCATATGCGT 475 hqPGS_C06HBa0024L21.1-4-_SGN-E291630+ (9256 9198,8412 8324,8236 8171,8073 7999,7620 7494,7412 7366,7258 7247) ******************************************************************************** EST sequence 50 +strand 313 n (File: SGN-E277755+) 1 GCACGAGCTT CCCAGGAACA ATGAGTCGGT CGAGTAGGAC ACTTTATGTT GGCAATCTTC 61 CTGGTGATGT CTCGTGAGCG TGAAGTGGAA GATCTCTTTT ACAAGTATGG ACCGATTGCA 121 CATATTGAGC TGAAAATTCC ACCAAGACCC CCTGGTTATG CTTTTGTTGA GTTTGAAGAG 181 GCTCGTGATG CTGAAGATGC TATTCGTGGT CGTGATGGCT ATGATTTTGA TGGGCACCGT 241 CTGCGGGTTG AGCTTGCACA TGGCGGGCGT GGTAACTCAT CATCAAATGA TCGTTATGGT 301 GGTGGCGGTG GCG Predicted gene structure (within gDNA segment 9883 to 6656): Exon 1 8412 8324 ( 89 n); cDNA 16 105 ( 90 n); score: 0.860 Intron 1 8323 8237 ( 87 n); Pd: 1.000 (s: 0.85), Pa: 0.999 (s: 0.92) Exon 2 8236 8171 ( 66 n); cDNA 106 171 ( 66 n); score: 0.939 Intron 2 8170 8074 ( 97 n); Pd: 0.999 (s: 0.96), Pa: 0.998 (s: 0.90) Exon 3 8073 7999 ( 75 n); cDNA 172 246 ( 75 n); score: 0.880 Intron 3 7998 7621 ( 378 n); Pd: 0.996 (s: 0.88), Pa: 0.996 (s: 0.84) Exon 4 7620 7565 ( 56 n); cDNA 247 302 ( 56 n); score: 0.839 MATCH C06HBa0024L21.1-4- SGN-E277755+ 0.879 286 0.914 C PGS_C06HBa0024L21.1-4-_SGN-E277755+ (8412 8324,8236 8171,8073 7999,7620 7565) Alignment (genomic DNA sequence = upper lines): GAACAATGAG TCGTTCAAGT AGGACGATTT ATGTTGGTAA TCTTCCTGGT GATAT-TCGT 8354 |||||||||| ||| || ||| ||||| ||| ||||||| || |||||||||| ||| | |||| GAACAATGAG TCGGTCGAGT AGGACACTTT ATGTTGGCAA TCTTCCTGGT GATGTCTCGT 75 GAGCGAGAAG TGGAGGATCT GTTCTACAAG GTACTTGTAT AACACTTAGC TTCATACTTT 8294 ||||| |||| |||| ||||| || |||||| GAGCGTGAAG TGGAAGATCT CTTTTACAAG .......... .......... .......... 105 AGTTGGATGT CATTTACTAT GCTCATAAAC TTAAATGTGT GTGGCGTATA ATTGTAGTAT 8234 ||| .......... .......... .......... .......... .......... .......TAT 108 GGCCCGATAG CACATATTGA TCTGAAAATT CCACCAAGAC CCCCAGGTTA TGCTTTTGTT 8174 || ||||| | |||||||||| ||||||||| |||||||||| |||| ||||| |||||||||| GGACCGATTG CACATATTGA GCTGAAAATT CCACCAAGAC CCCCTGGTTA TGCTTTTGTT 168 GAGGTAAGTT TTGACTGCAT TGGCTAAAAT GAATTTCATT GGATATTTCC TTCTCAATTG 8114 ||| GAG....... .......... .......... .......... .......... .......... 171 TTAACCTATT TTGACATTGT TTTGTTGGAA CTAAACACAG TTTGAAGAGG CACGCGATGC 8054 |||||||||| | || ||||| .......... .......... .......... .......... TTTGAAGAGG CTCGTGATGC 191 TGAGGATGCT ATTCGTGGGC GCGATGGCTA TGAATTTGAT GGGCATCGTT TGAGGGTTAG 7994 ||| |||||| |||||||| | | |||||||| ||| |||||| ||||| ||| || || TGAAGATGCT ATTCGTGGTC GTGATGGCTA TGATTTTGAT GGGCACCGTC TGCGG..... 246 TAAAATCTTA ACAGCATATA GGATACACAC ACATGAATCA ATTGTATCCT CTGTTTACTC 7934 .......... .......... .......... .......... .......... .......... 246 TGAGAAGTAT GATTGACTTG CATTTTTGAA TCAGGGTTTC CAATTCTTGT ATTAATTGCA 7874 .......... .......... .......... .......... .......... .......... 246 TTTCGTTGAC CCTAGCATTT CACCTAAACC ATTATGTTTC TTTATTAAAT GCTTGTCCCA 7814 .......... .......... .......... .......... .......... .......... 246 AATTAGTTGG GATCAGTTTT ATAAATTGTC TGTAACCATC CTACTTTATC CAGGCGTATT 7754 .......... .......... .......... .......... .......... .......... 246 TTTCTTTTCA AGCTTAGTTT GTCTTTCAAG GCAAATTAAC ATGTCTAATA CATATAAGAC 7694 .......... .......... .......... .......... .......... .......... 246 ACCTAAATGC TAAATAGTTT TCTTTTTGAG GTGCTTAAGA TCTAAGCCTA CTGAAACTGT 7634 .......... .......... .......... .......... .......... .......... 246 TACATGTATG CAGGTTGAGC TTGCACATGG TGGGCGTGGT AACTCATCGT CAGATCGTTA 7574 ||||||| |||||||||| ||||||||| |||||||| | || || | .......... ...GTTGAGC TTGCACATGG CGGGCGTGGT AACTCATCAT CAAATGATCG 293 TAATAGTGG 7565 | || |||| TTATGGTGG 302 hqPGS_C06HBa0024L21.1-4-_SGN-E277755+ (8412 8324,8236 8171,8073 7999,7620 7565) ******************************************************************************** EST sequence 24 +strand 305 n (File: SGN-E337525+) 1 TGTTTTCATC CTTCATCAAT CTTCTAGTAA AGGAACAATG AGTCGTTCAA GTAGGACGAT 61 TTATGTTGGT AATCTTCCTG GTGATATTCG TGAGCGAGAA GTGGAGGATC TGTTCTACAA 121 GTATGGCCCG ATAGCACATA TTGATCTGAA AATTCCACCA AGACCCCCAG GTTATGCTTT 181 TGTTGAGTTT GAAGAGGCAC GCGATGCTGA GGATGCTATT CGTGGGCGCG ATGGCTATGA 241 ATTTGATGGG CATCGTTTGA GGGTTGAGCT TGCACATGGT GGGCGTGGTA ACTCATCGTC 301 AGATC Predicted gene structure (within gDNA segment 9829 to 6968): Exon 1 9229 9198 ( 32 n); cDNA 1 32 ( 32 n); score: 1.000 Intron 1 9197 8413 ( 785 n); Pd: 0.980 (s: 0), Pa: 0.998 (s: 1.00) Exon 2 8412 8324 ( 89 n); cDNA 33 121 ( 89 n); score: 1.000 Intron 2 8323 8237 ( 87 n); Pd: 1.000 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 3 8236 8171 ( 66 n); cDNA 122 187 ( 66 n); score: 1.000 Intron 3 8170 8074 ( 97 n); Pd: 0.999 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 4 8073 7999 ( 75 n); cDNA 188 262 ( 75 n); score: 1.000 Intron 4 7998 7621 ( 378 n); Pd: 0.996 (s: 1.00), Pa: 0.996 (s: 1.00) Exon 5 7620 7578 ( 43 n); cDNA 263 305 ( 43 n); score: 1.000 MATCH C06HBa0024L21.1-4- SGN-E337525+ 1.000 305 1.000 C PGS_C06HBa0024L21.1-4-_SGN-E337525+ (9229 9198,8412 8324,8236 8171,8073 7999,7620 7578) Alignment (genomic DNA sequence = upper lines): TGTTTTCATC CTTCATCAAT CTTCTAGTAA AGGTACGTTC CTTCGGTCTT TGTTAATGGA 9170 |||||||||| |||||||||| |||||||||| || TGTTTTCATC CTTCATCAAT CTTCTAGTAA AG........ .......... .......... 32 GGTCCGTTTA ATCGGCATCT ATCAAACGAA ATAGCTAACA AGATCTGTTT TTTAATTTTA 9110 .......... .......... .......... .......... .......... .......... 32 GTTTCTTCCG TTTTGCTCAT TTTACCCAGC GAAAAATGTA TTTCAATTCA CTTAAAACGT 9050 .......... .......... .......... .......... .......... .......... 32 TGTTCAGAGG CGGATCTAGC ATAGAATCAG TCTACATACA GGAAAAATAG CAATAAAGTA 8990 .......... .......... .......... .......... .......... .......... 32 TCTATACATA ATTTGTGTAT GTAATTGTGT ATCCATTATT AGTGTGTTCT GTATGCAGGA 8930 .......... .......... .......... .......... .......... .......... 32 AATGTTTTTT TTCGTCTTGG AAAATAACCG GGTTTCTTAC TTAGTTGTGT TCGGTAGGCA 8870 .......... .......... .......... .......... .......... .......... 32 AGCGAAAAAT ATTAGTACAA TTATTTGTAT GTAATCTAGA CAAATACTCT TGAGTTGGGT 8810 .......... .......... .......... .......... .......... .......... 32 GGTGGGGATG GTGGCTAAGA GTGTGGTGGT GAAGATGAGG TTGGTTGGAG GGTGGGGAGA 8750 .......... .......... .......... .......... .......... .......... 32 ACACAATCAA TGTGGAATTT TATTTGTTGA ACCTGTTTTC ACTACTTCCA TTGAGGAAGT 8690 .......... .......... .......... .......... .......... .......... 32 CAAATTTTTT TATTTTGAAG CAACTTAATT TCCTAGAGAA GATGTTTTCC ATAAATTTTA 8630 .......... .......... .......... .......... .......... .......... 32 CCAACCATGA GAAAACTTGG AAACATTTTT CTGGAAAATG GTTTCATTCG TATCTAACAC 8570 .......... .......... .......... .......... .......... .......... 32 ACCCTATATG TATGTTTGTT ACTTTGTTTA TGTATTTGTG TGCGAATCAA GTTGATTGCT 8510 .......... .......... .......... .......... .......... .......... 32 CAAGTTGTGT TTTTGTGACT TAAGTTCTTC ATGAATTTTA TCCATTTTTG TTTCTCAGGT 8450 .......... .......... .......... .......... .......... .......... 32 GGGTTTTGAT TGTATTTTTT TGTTGAATTA TTTTTAGGAA CAATGAGTCG TTCAAGTAGG 8390 ||| |||||||||| |||||||||| .......... .......... .......... .......GAA CAATGAGTCG TTCAAGTAGG 55 ACGATTTATG TTGGTAATCT TCCTGGTGAT ATTCGTGAGC GAGAAGTGGA GGATCTGTTC 8330 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACGATTTATG TTGGTAATCT TCCTGGTGAT ATTCGTGAGC GAGAAGTGGA GGATCTGTTC 115 TACAAGGTAC TTGTATAACA CTTAGCTTCA TACTTTAGTT GGATGTCATT TACTATGCTC 8270 |||||| TACAAG.... .......... .......... .......... .......... .......... 121 ATAAACTTAA ATGTGTGTGG CGTATAATTG TAGTATGGCC CGATAGCACA TATTGATCTG 8210 ||||||| |||||||||| |||||||||| .......... .......... .......... ...TATGGCC CGATAGCACA TATTGATCTG 148 AAAATTCCAC CAAGACCCCC AGGTTATGCT TTTGTTGAGG TAAGTTTTGA CTGCATTGGC 8150 |||||||||| |||||||||| |||||||||| ||||||||| AAAATTCCAC CAAGACCCCC AGGTTATGCT TTTGTTGAG. .......... .......... 187 TAAAATGAAT TTCATTGGAT ATTTCCTTCT CAATTGTTAA CCTATTTTGA CATTGTTTTG 8090 .......... .......... .......... .......... .......... .......... 187 TTGGAACTAA ACACAGTTTG AAGAGGCACG CGATGCTGAG GATGCTATTC GTGGGCGCGA 8030 |||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ......TTTG AAGAGGCACG CGATGCTGAG GATGCTATTC GTGGGCGCGA 231 TGGCTATGAA TTTGATGGGC ATCGTTTGAG GGTTAGTAAA ATCTTAACAG CATATAGGAT 7970 |||||||||| |||||||||| |||||||||| | TGGCTATGAA TTTGATGGGC ATCGTTTGAG G......... .......... .......... 262 ACACACACAT GAATCAATTG TATCCTCTGT TTACTCTGAG AAGTATGATT GACTTGCATT 7910 .......... .......... .......... .......... .......... .......... 262 TTTGAATCAG GGTTTCCAAT TCTTGTATTA ATTGCATTTC GTTGACCCTA GCATTTCACC 7850 .......... .......... .......... .......... .......... .......... 262 TAAACCATTA TGTTTCTTTA TTAAATGCTT GTCCCAAATT AGTTGGGATC AGTTTTATAA 7790 .......... .......... .......... .......... .......... .......... 262 ATTGTCTGTA ACCATCCTAC TTTATCCAGG CGTATTTTTC TTTTCAAGCT TAGTTTGTCT 7730 .......... .......... .......... .......... .......... .......... 262 TTCAAGGCAA ATTAACATGT CTAATACATA TAAGACACCT AAATGCTAAA TAGTTTTCTT 7670 .......... .......... .......... .......... .......... .......... 262 TTTGAGGTGC TTAAGATCTA AGCCTACTGA AACTGTTACA TGTATGCAGG TTGAGCTTGC 7610 | |||||||||| .......... .......... .......... .......... .........G TTGAGCTTGC 273 ACATGGTGGG CGTGGTAACT CATCGTCAGA TC 7578 |||||||||| |||||||||| |||||||||| || ACATGGTGGG CGTGGTAACT CATCGTCAGA TC 305 hqPGS_C06HBa0024L21.1-4-_SGN-E337525+ (9229 9198,8412 8324,8236 8171,8073 7999,7620 7578) ******************************************************************************** EST sequence 49 +strand 274 n (File: SGN-E311338+) 1 TTACAAGTAT GGACCGATTG CACATATTGA GCTGAAAATT CCACCAAGAC CCCCTGGTTA 61 TGCTTTTGTT GAGTTTGAAG AGGCTCGTGA TGCTGAAGAT GCTATTCGTG GTCGTGATGG 121 CTATGATTTT GATGGGCACC GTCTGCGGGT TGAGCTTGCA CATGGCGGGC GTGGTAACTC 181 ATCATCAAAT GATCGTTATG GTGGTGGCGG TGGCGGCCGT GGTCAGCGTG GTGGAGGAGT 241 GTCAAGACGT TCAGATTATC GAGTGTTAGT TACA Predicted gene structure (within gDNA segment 9122 to 6066): Exon 1 8329 8324 ( 6 n); cDNA 2 7 ( 6 n); score: 1.000 Intron 1 8323 8237 ( 87 n); Pd: 1.000 (s: 0), Pa: 0.999 (s: 0.92) Exon 2 8236 8171 ( 66 n); cDNA 8 73 ( 66 n); score: 0.939 Intron 2 8170 8074 ( 97 n); Pd: 0.999 (s: 0.96), Pa: 0.998 (s: 0.90) Exon 3 8073 7999 ( 75 n); cDNA 74 148 ( 75 n); score: 0.880 Intron 3 7998 7621 ( 378 n); Pd: 0.996 (s: 0.88), Pa: 0.996 (s: 0.93) Exon 4 7620 7579 ( 42 n); cDNA 149 190 ( 42 n); score: 0.929 MATCH C06HBa0024L21.1-4- SGN-E311338+ 0.908 189 0.690 C PGS_C06HBa0024L21.1-4-_SGN-E311338+ (8329 8324,8236 8171,8073 7999,7620 7579) Alignment (genomic DNA sequence = upper lines): TACAAGGTAC TTGTATAACA CTTAGCTTCA TACTTTAGTT GGATGTCATT TACTATGCTC 8270 |||||| TACAAG.... .......... .......... .......... .......... .......... 7 ATAAACTTAA ATGTGTGTGG CGTATAATTG TAGTATGGCC CGATAGCACA TATTGATCTG 8210 ||||| | |||| ||||| |||||| ||| .......... .......... .......... ...TATGGAC CGATTGCACA TATTGAGCTG 34 AAAATTCCAC CAAGACCCCC AGGTTATGCT TTTGTTGAGG TAAGTTTTGA CTGCATTGGC 8150 |||||||||| |||||||||| ||||||||| ||||||||| AAAATTCCAC CAAGACCCCC TGGTTATGCT TTTGTTGAG. .......... .......... 73 TAAAATGAAT TTCATTGGAT ATTTCCTTCT CAATTGTTAA CCTATTTTGA CATTGTTTTG 8090 .......... .......... .......... .......... .......... .......... 73 TTGGAACTAA ACACAGTTTG AAGAGGCACG CGATGCTGAG GATGCTATTC GTGGGCGCGA 8030 |||| ||||||| || |||||||| |||||||||| |||| || || .......... ......TTTG AAGAGGCTCG TGATGCTGAA GATGCTATTC GTGGTCGTGA 117 TGGCTATGAA TTTGATGGGC ATCGTTTGAG GGTTAGTAAA ATCTTAACAG CATATAGGAT 7970 ||||||||| |||||||||| | ||| || | | TGGCTATGAT TTTGATGGGC ACCGTCTGCG G......... .......... .......... 148 ACACACACAT GAATCAATTG TATCCTCTGT TTACTCTGAG AAGTATGATT GACTTGCATT 7910 .......... .......... .......... .......... .......... .......... 148 TTTGAATCAG GGTTTCCAAT TCTTGTATTA ATTGCATTTC GTTGACCCTA GCATTTCACC 7850 .......... .......... .......... .......... .......... .......... 148 TAAACCATTA TGTTTCTTTA TTAAATGCTT GTCCCAAATT AGTTGGGATC AGTTTTATAA 7790 .......... .......... .......... .......... .......... .......... 148 ATTGTCTGTA ACCATCCTAC TTTATCCAGG CGTATTTTTC TTTTCAAGCT TAGTTTGTCT 7730 .......... .......... .......... .......... .......... .......... 148 TTCAAGGCAA ATTAACATGT CTAATACATA TAAGACACCT AAATGCTAAA TAGTTTTCTT 7670 .......... .......... .......... .......... .......... .......... 148 TTTGAGGTGC TTAAGATCTA AGCCTACTGA AACTGTTACA TGTATGCAGG TTGAGCTTGC 7610 | |||||||||| .......... .......... .......... .......... .........G TTGAGCTTGC 159 ACATGGTGGG CGTGGTAACT CATCGTCAGA T 7579 |||||| ||| |||||||||| |||| ||| | | ACATGGCGGG CGTGGTAACT CATCATCAAA T 190 hqPGS_C06HBa0024L21.1-4-_SGN-E311338+ (8329 8324,8236 8171,8073 7999,7620 7579) ******************************************************************************** EST sequence 56 +strand 374 n (File: SGN-E313109+) 1 AATTTCCTCT TCTTCTACGC TTTCTGCTCT CGATCTTCCC AGGAACAATG AGTCGGTCGA 61 GTAGGACACT TTATGTTGGC AATCTTCCTG GTGATGTTCG TGAGCGTGAA GTGGAAGATC 121 TCTTTTACAA GTATGGACCG ATTGCACATA TTGAGCTGAA AATTCCACCA AGACCCCCTG 181 GTTATGCTTT TGTTGAGTTT GAAGAGGCTC GTGATGCTGA AGATGCTATT CGTGGTCGTG 241 ATGGCTATGA TTTTGATGGG CACCGTCTGC GGGTTGAGCT TGCACATGGC GGGCGTGGTA 301 ACTCATCATC AAATGATCGT TATGGTGGTG GCGGTGGCAG CCGTGGTCAG CGTGGTGGAG 361 GAGTGTCAAG ACGT Predicted gene structure (within gDNA segment 9883 to 6306): Exon 1 8412 8324 ( 89 n); cDNA 43 131 ( 89 n); score: 0.888 Intron 1 8323 8237 ( 87 n); Pd: 1.000 (s: 0.90), Pa: 0.999 (s: 0.92) Exon 2 8236 8171 ( 66 n); cDNA 132 197 ( 66 n); score: 0.939 Intron 2 8170 8074 ( 97 n); Pd: 0.999 (s: 0.96), Pa: 0.998 (s: 0.90) Exon 3 8073 7999 ( 75 n); cDNA 198 272 ( 75 n); score: 0.880 Intron 3 7998 7621 ( 378 n); Pd: 0.996 (s: 0.88), Pa: 0.996 (s: 0) Exon 4 7620 7586 ( 35 n); cDNA 273 307 ( 35 n); score: 0.971 MATCH C06HBa0024L21.1-4- SGN-E313109+ 0.900 265 0.709 C PGS_C06HBa0024L21.1-4-_SGN-E313109+ (8412 8324,8236 8171,8073 7999,7620 7586) Alignment (genomic DNA sequence = upper lines): GAACAATGAG TCGTTCAAGT AGGACGATTT ATGTTGGTAA TCTTCCTGGT GATATTCGTG 8353 |||||||||| ||| || ||| ||||| ||| ||||||| || |||||||||| ||| |||||| GAACAATGAG TCGGTCGAGT AGGACACTTT ATGTTGGCAA TCTTCCTGGT GATGTTCGTG 102 AGCGAGAAGT GGAGGATCTG TTCTACAAGG TACTTGTATA ACACTTAGCT TCATACTTTA 8293 |||| ||||| ||| ||||| || |||||| AGCGTGAAGT GGAAGATCTC TTTTACAAG. .......... .......... .......... 131 GTTGGATGTC ATTTACTATG CTCATAAACT TAAATGTGTG TGGCGTATAA TTGTAGTATG 8233 |||| .......... .......... .......... .......... .......... ......TATG 135 GCCCGATAGC ACATATTGAT CTGAAAATTC CACCAAGACC CCCAGGTTAT GCTTTTGTTG 8173 | ||||| || ||||||||| |||||||||| |||||||||| ||| |||||| |||||||||| GACCGATTGC ACATATTGAG CTGAAAATTC CACCAAGACC CCCTGGTTAT GCTTTTGTTG 195 AGGTAAGTTT TGACTGCATT GGCTAAAATG AATTTCATTG GATATTTCCT TCTCAATTGT 8113 || AG........ .......... .......... .......... .......... .......... 197 TAACCTATTT TGACATTGTT TTGTTGGAAC TAAACACAGT TTGAAGAGGC ACGCGATGCT 8053 | |||||||||| || |||||| .......... .......... .......... .........T TTGAAGAGGC TCGTGATGCT 218 GAGGATGCTA TTCGTGGGCG CGATGGCTAT GAATTTGATG GGCATCGTTT GAGGGTTAGT 7993 || ||||||| ||||||| || ||||||||| || ||||||| |||| ||| | | || GAAGATGCTA TTCGTGGTCG TGATGGCTAT GATTTTGATG GGCACCGTCT GCGG...... 272 AAAATCTTAA CAGCATATAG GATACACACA CATGAATCAA TTGTATCCTC TGTTTACTCT 7933 .......... .......... .......... .......... .......... .......... 272 GAGAAGTATG ATTGACTTGC ATTTTTGAAT CAGGGTTTCC AATTCTTGTA TTAATTGCAT 7873 .......... .......... .......... .......... .......... .......... 272 TTCGTTGACC CTAGCATTTC ACCTAAACCA TTATGTTTCT TTATTAAATG CTTGTCCCAA 7813 .......... .......... .......... .......... .......... .......... 272 ATTAGTTGGG ATCAGTTTTA TAAATTGTCT GTAACCATCC TACTTTATCC AGGCGTATTT 7753 .......... .......... .......... .......... .......... .......... 272 TTCTTTTCAA GCTTAGTTTG TCTTTCAAGG CAAATTAACA TGTCTAATAC ATATAAGACA 7693 .......... .......... .......... .......... .......... .......... 272 CCTAAATGCT AAATAGTTTT CTTTTTGAGG TGCTTAAGAT CTAAGCCTAC TGAAACTGTT 7633 .......... .......... .......... .......... .......... .......... 272 ACATGTATGC AGGTTGAGCT TGCACATGGT GGGCGTGGTA ACTCATC 7586 |||||||| ||||||||| |||||||||| ||||||| .......... ..GTTGAGCT TGCACATGGC GGGCGTGGTA ACTCATC 307 hqPGS_C06HBa0024L21.1-4-_SGN-E313109+ (8412 8324,8236 8171,8073 7999,7620 7586) Total number of EST alignments reported: 58 ________________________________________________________________________________ Predicted gene locations (2) in segment 1 to 9883: PGL 1 (+ strand): 1 1457 AGS-1 (1 215) SCR (e 0.995) Exon 1 1 215 ( 215 n); score: 0.995 PGS (1 215) SGN-E274513+ PGS (68 118) SGN-E249992+ 3-phase translation of AGS-1 (+strand): . . . . . . 1 TTTAAAAAAAAAGGTTTAAAAAAATCATTTTTACGTAGTGATTTGATATTTTTGTACTAT F K K K G L K K S F L R S D L I F L Y Y L K K K V - K N H F Y V V I - Y F C T I - K K R F K K I I F T - - F D I F V L . . . . . . 61 TTTGTAGGTGAATGATGTTGTAGTTGAGATAGTGGAAGGTGATGCTAGGCATGTCCTTTG F V G E - C C S - D S G R - C - A C P L L - V N D V V V E I V E G D A R H V L C F C R - M M L - L R - W K V M L G M S F . . . . . . 121 TGAAGCTGTAGAGAAACTTCATGCCTCTGTTTTAGTTGTTGGTTGTCATGGTTATGGAGT - S C R E T S C L C F S C W L S W L W S E A V E K L H A S V L V V G C H G Y G V V K L - R N F M P L F - L L V V M V M E . . . . 181 TATAAAGAGGTAAATTTAATTTATATACGTTCACA Y K E V N L I Y I R S I K R - I - F I Y V H L - R G K F N L Y T F T Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-1 (-strand): . . . . . . 215 TGTGAACGTATATAAATTAAATTTACCTCTTTATAACTCCATAACCATGACAACCAACAA C E R I - I K F T S L - L H N H D N Q Q V N V Y K L N L P L Y N S I T M T T N N - T Y I N - I Y L F I T P - P - Q P T . . . . . . 155 CTAAAACAGAGGCATGAAGTTTCTCTACAGCTTCACAAAGGACATGCCTAGCATCACCTT L K Q R H E V S L Q L H K G H A - H H L - N R G M K F L Y S F T K D M P S I T F T K T E A - S F S T A S Q R T C L A S P . . . . . . 95 CCACTATCTCAACTACAACATCATTCACCTACAAAATAGTACAAAAATATCAAATCACTA P L S Q L Q H H S P T K - Y K N I K S L H Y L N Y N I I H L Q N S T K I S N H Y S T I S T T T S F T Y K I V Q K Y Q I T . . . . 35 CGTAAAAATGATTTTTTTAAACCTTTTTTTTTAAA R K N D F F K P F F L V K M I F L N L F F - T - K - F F - T F F F K Maximal non-overlapping open reading frames (>= 64 codons): none AGS-2 (68 189,1035 1457) SCR (e 1.000 d 0.966 a 0.997,e 1.000) Exon 1 68 189 ( 122 n); score: 1.000 Intron 1 190 1034 ( 845 n); Pd: 0.966 Pa: 0.997 Exon 2 1035 1457 ( 423 n); score: 1.000 PGS (68 189,1035 1457) SGN-E247476+ PGS (68 189,1035 1367) SGN-E392034- PGS (68 189,1035 1313) SGN-E213576+ PGS (68 189,1035 1262) SGN-E397751+ PGS (68 189,1035 1235) SGN-E391787+ PGS (68 189,1035 1188) SGN-E259407+ PGS (68 189,1035 1126) SGN-E250018+ PGS (68 189,1035 1120) SGN-E251289+ PGS (68 189,1035 1120) SGN-E276382+ PGS (68 189,1035 1120) SGN-E393150- PGS (68 189,1035 1120) SGN-E219441- PGS (68 189,1035 1100) SGN-E276224+ PGS (68 189,1035 1097) SGN-E247389+ PGS (68 189,1035 1093) SGN-E259159+ PGS (68 189,1035 1093) SGN-E356681+ PGS (1286 1387) SGN-E253631+ PGS (1286 1387) SGN-E255587+ 3-phase translation of AGS-2 (+strand): . . . . . . 68 GTGAATGATGTTGTAGTTGAGATAGTGGAAGGTGATGCTAGGCATGTCCTTTGTGAAGCT V N D V V V E I V E G D A R H V L C E A - M M L - L R - W K V M L G M S F V K L E - C C S - D S G R - C - A C P L - S . . . . . . 128 GTAGAGAAACTTCATGCCTCTGTTTTAGTTGTTGGTTGTCATGGTTATGGAGTTATAAAG V E K L H A S V L V V G C H G Y G V I K - R N F M P L F - L L V V M V M E L - R C R E T S C L C F S C W L S W L W S Y K . : . . . . . 188 AG : GACTGTTTTGGGTAGTGTAAGTGACTACTGTGCTCATCATGCCCACTGCAGTGTGATG R : T V L G S V S D Y C A H H A H C S V M : G L F W V V - V T T V L I M P T A V - - E : D C F G - C K - L L C S S C P L Q C D . . . . . . 1093 ATTGTGAAGAAGCCAAAGACTAAAGCTTAAATTGTTTCTACTTGGCATTTGATTTGTTGT I V K K P K T K A - I V S T W H L I C C L - R S Q R L K L K L F L L G I - F V V D C E E A K D - S L N C F Y L A F D L L . . . . . . 1153 GTTGTCCTAGTGAATAAGATTACAAATATGTGATCTGTTTCTTCAACTCCAGGAGGAAAG V V L V N K I T N M - S V S S T P G G K L S - - I R L Q I C D L F L Q L Q E E R C C P S E - D Y K Y V I C F F N S R R K . . . . . . 1213 GAAAAGAAAAGAAACTCATTTGTTTGTGTATTTATTTGATTTCTGCACTCAGTATCTATA E K K R N S F V C V F I - F L H S V S I K R K E T H L F V Y L F D F C T Q Y L Y G K E K K L I C L C I Y L I S A L S I Y . . . . . . 1273 TATTACAAGGCTGTGGTGGTTGTGTAACAAAACAAATACTTTAGGGTCTTGTGTAGTGTT Y Y K A V V V V - Q N K Y F R V L C S V I T R L W W L C N K T N T L G S C V V L I L Q G C G G C V T K Q I L - G L V - C . . . . . . 1333 AATCACAATCTTCATGTATAAAATAAAAGACTAAATGCAGTGTATGGAGCTCCAAGTTAT N H N L H V - N K R L N A V Y G A P S Y I T I F M Y K I K D - M Q C M E L Q V I - S Q S S C I K - K T K C S V W S S K L . . . . . . 1393 CCTCCTCATAAATATATCAGGTTGTCCACGAGAATTATTAGTAGTATAGAAACTTGATAT P P H K Y I R L S T R I I S S I E T - Y L L I N I S G C P R E L L V V - K L D I S S S - I Y Q V V H E N Y - - Y R N L I . 1453 ACATT T H Y I Maximal non-overlapping open reading frames (>= 64 codons): >C06HBa0024L21.1-4+_PGL-1_AGS-2_PPS_1 (68 189,1035 1122) (frame '1'; 207 bp, 69 residues) 1 VNDVVVEIVE GDARHVLCEA VEKLHASVLV VGCHGYGVIK RTVLGSVSDY CAHHAHCSVM 61 IVKKPKTKA- >C06HBa0024L21.1-4+_PGL-1_AGS-2_PPS_2 (1166 1366) (frame '2'; 198 bp, 66 residues) 1 IRLQICDLFL QLQEERKRKE THLFVYLFDF CTQYLYITRL WWLCNKTNTL GSCVVLITIF 61 MYKIKD- PGL 2 (- strand): 9270 1599 AGS-1 (9270 9198,8412 8324,8236 8171,8073 7999,7620 7494,7412 7366,7258 7201,5100 5051,4938 4882,4767 4661,4572 4474,2738 2705,2532 2258,2147 1599) SCR (e 1.000 d 0.980 a 0.998,e 1.000 d 1.000 a 0.999,e 1.000 d 0.999 a 0.998,e 1.000 d 0.996 a 0.996,e 1.000 d 0.994 a 0.994,e 1.000 d 0.700 a 0.998,e 1.000 d 0.922 a 0.926,e 1.000 d 0.999 a 0.959,e 1.000 d 0.871 a 0.999,e 1.000 d 1.000 a 0.429,e 1.000 d 0.995 a 0.876,e 1.000 d 0.996 a 0.978,e 1.000 d 0.723 a 0.997,e 1.000) Exon 1 9270 9198 ( 73 n); score: 1.000 Intron 1 9197 8413 ( 785 n); Pd: 0.980 Pa: 0.998 Exon 2 8412 8324 ( 89 n); score: 1.000 Intron 2 8323 8237 ( 87 n); Pd: 1.000 Pa: 0.999 Exon 3 8236 8171 ( 66 n); score: 1.000 Intron 3 8170 8074 ( 97 n); Pd: 0.999 Pa: 0.998 Exon 4 8073 7999 ( 75 n); score: 1.000 Intron 4 7998 7621 ( 378 n); Pd: 0.996 Pa: 0.996 Exon 5 7620 7494 ( 127 n); score: 1.000 Intron 5 7493 7413 ( 81 n); Pd: 0.994 Pa: 0.994 Exon 6 7412 7366 ( 47 n); score: 1.000 Intron 6 7365 7259 ( 107 n); Pd: 0.700 Pa: 0.998 Exon 7 7258 7201 ( 58 n); score: 1.000 Intron 7 7200 5101 (2100 n); Pd: 0.922 Pa: 0.926 Exon 8 5100 5051 ( 50 n); score: 1.000 Intron 8 5050 4939 ( 112 n); Pd: 0.999 Pa: 0.959 Exon 9 4938 4882 ( 57 n); score: 1.000 Intron 9 4881 4768 ( 114 n); Pd: 0.871 Pa: 0.999 Exon 10 4767 4661 ( 107 n); score: 1.000 Intron 10 4660 4573 ( 88 n); Pd: 1.000 Pa: 0.429 Exon 11 4572 4474 ( 99 n); score: 1.000 Intron 11 4473 2739 (1735 n); Pd: 0.995 Pa: 0.876 Exon 12 2738 2705 ( 34 n); score: 1.000 Intron 12 2704 2533 ( 172 n); Pd: 0.996 Pa: 0.978 Exon 13 2532 2258 ( 275 n); score: 1.000 Intron 13 2257 2148 ( 110 n); Pd: 0.723 Pa: 0.997 Exon 14 2147 1599 ( 549 n); score: 1.000 PGS (1933 1599) SGN-E220834- PGS (1820 1599) SGN-E220905- PGS (2146 1774) SGN-E348264+ PGS (2340 2258,2147 1793) SGN-E350954+ PGS (2327 2258,2147 1793) SGN-E345135+ PGS (4716 4661,4572 4474,2738 2705,2532 2258,2147 1805) SGN-E554369- PGS (2063 1805) SGN-E224349- PGS (2528 2258,2147 1886) SGN-E208084+ PGS (2710 2705,2532 2258,2147 1915) SGN-E336629+ PGS (5056 5051,4938 4882,4767 4661,4572 4474,2738 2705,2532 2299) SGN-E201707+ PGS (4929 4882,4767 4661,4572 4474,2738 2705,2532 2373) SGN-E274214+ PGS (8334 8324,8236 8171,8073 7999,7620 7494,7412 7366,7258 7201,5100 5051,4938 4882,4767 4661,4572 4474,2738 2705,2532 2492) SGN-E320480+ PGS (9247 9198,8412 8324,8236 8171,8073 7999,7620 7494,7412 7366,7258 7201,5100 5051,4938 4882,4767 4699) SGN-E316156+ PGS (8414 8324,8236 8171,8073 7999,7620 7494,7412 7366,7258 7201,5100 5051,4938 4882,4767 4754) SGN-E271755+ PGS (8414 8324,8236 8171,8073 7999,7620 7494,7412 7366,7258 7201,5100 5051,4938 4882,4767 4755) SGN-E341527+ PGS (8209 8171,8073 7999,7620 7494,7412 7366,7258 7201,5100 5051,4938 4882,4767 4755) SGN-E256458+ PGS (8412 8324,8236 8171,8073 7999,7620 7494,7412 7366,7258 7201,5100 5051,4938 4882) SGN-E288997+ PGS (8406 8324,8236 8171,8073 7999,7620 7494,7412 7366,7258 7201,5100 5051,4938 4882) SGN-E316391+ PGS (8413 8324,8236 8171,8073 7999,7620 7494,7412 7366,7258 7201,5100 5051,4938 4889) SGN-E246019+ PGS (8419 8324,8236 8171,8073 7999,7620 7494,7412 7366,7258 7201,5100 5051,4938 4894) SGN-E315505+ PGS (8419 8324,8236 8171,8073 7999,7620 7494,7412 7366,7258 7201,5100 5051,4938 4894) SGN-E270766+ PGS (8409 8324,8236 8171,8073 7999,7620 7494,7412 7366,7258 7201,5100 5051,4938 4894) SGN-E273178+ PGS (9253 9198,8412 8324,8236 8171,8073 7999,7620 7494,7412 7366,7258 7201,5100 5051,4938 4906) SGN-E314227+ PGS (8419 8324,8236 8171,8073 7999,7620 7494,7412 7366,7258 7201,5100 5051,4938 4913) SGN-E303833+ PGS (8406 8324,8236 8171,8073 7999,7620 7494,7412 7366,7258 7201,5100 5051,4938 4917) SGN-E338532+ PGS (9248 9198,8412 8324,8236 8171,8073 7999,7620 7494,7412 7366,7258 7201,5100 5067) SGN-E205241+ PGS (9270 9198,8412 8324,8236 8171,8073 7999,7620 7494,7412 7366,7258 7201) SGN-E349024+ PGS (9227 9198,8412 8324,8236 8171,8073 7999,7620 7494,7412 7366,7258 7215) SGN-E331080+ PGS (9258 9198,8412 8324,8236 8171,8073 7999,7620 7494,7412 7366,7258 7235) SGN-E207746+ PGS (9256 9198,8412 8324,8236 8171,8073 7999,7620 7494,7412 7366,7258 7247) SGN-E291630+ PGS (8412 8324,8236 8171,8073 7999,7620 7565) SGN-E277755+ PGS (9229 9198,8412 8324,8236 8171,8073 7999,7620 7578) SGN-E337525+ PGS (8329 8324,8236 8171,8073 7999,7620 7579) SGN-E311338+ PGS (8412 8324,8236 8171,8073 7999,7620 7586) SGN-E313109+ 3-phase translation of AGS-1 (-strand): . . . . . . 9270 AAAACCCTAACCTTCAAAATTCTCCTTCTCTAAGCGCTCTGTGTTTTCATCCTTCATCAA K T L T F K I L L L - A L C V F I L H Q K P - P S K F S F S K R S V F S S F I N N P N L Q N S P S L S A L C F H P S S . . : . . . . 9210 TCTTCTAGTAAAG : GAACAATGAGTCGTTCAAGTAGGACGATTTATGTTGGTAATCTTCCT S S S K : G T M S R S S R T I Y V G N L P L L V K : E Q - V V Q V G R F M L V I F L I F - - R : N N E S F K - D D L C W - S S . . . . . : . 8365 GGTGATATTCGTGAGCGAGAAGTGGAGGATCTGTTCTACAAG : TATGGCCCGATAGCACAT G D I R E R E V E D L F Y K : Y G P I A H V I F V S E K W R I C S T S : M A R - H I W - Y S - A R S G G S V L Q : V W P D S T . . . . . : . 8218 ATTGATCTGAAAATTCCACCAAGACCCCCAGGTTATGCTTTTGTTGAG : TTTGAAGAGGCA I D L K I P P R P P G Y A F V E : F E E A L I - K F H Q D P Q V M L L L S : L K R H Y - S E N S T K T P R L C F C - : V - R G . . . . . . 8061 CGCGATGCTGAGGATGCTATTCGTGGGCGCGATGGCTATGAATTTGATGGGCATCGTTTG R D A E D A I R G R D G Y E F D G H R L A M L R M L F V G A M A M N L M G I V - T R C - G C Y S W A R W L - I - W A S F . : . . . . . 8001 AGG : GTTGAGCTTGCACATGGTGGGCGTGGTAACTCATCGTCAGATCGTTATAATAGTGGC R : V E L A H G G R G N S S S D R Y N S G G : L S L H M V G V V T H R Q I V I I V A E : G - A C T W W A W - L I V R S L - - W . . . . . . 7563 AATAATAGTGGCCATAATGGTGGTCGTAATAATCACAAATTTGGAGCGCCCAAACGTACC N N S G H N G G R N N H K F G A P K R T I I V A I M V V V I I T N L E R P N V P Q - - W P - W W S - - S Q I W S A Q T Y . : . . . . . : 7503 GAGTATCGAG : TTTTAGTTACCGGATTGCCCCATTCAGCATCCTGGCAGGATCTCAAG : GAT E Y R : V L V T G L P H S A S W Q D L K : D S I E : F - L P D C P I Q H P G R I S R : I R V S S : F S Y R I A P F S I L A G S Q : G . . . . . . : 7255 CATATGCGTCGAGCTGGGGATGTTTGTTTCTCACAAGTTTTCCGTGAGGGGAGTG : GGACC H M R R A G D V C F S Q V F R E G S : G T I C V E L G M F V S H K F S V R G V : G P S Y A S S W G C L F L T S F P - G E W : D . . . . . : . 5095 ACTGGGATTGTGGATTATACCAACTATGACGACATGAAATATGCT : ATAAAAAAACTTGAT T G I V D Y T N Y D D M K Y A : I K K L D L G L W I I P T M T T - N M L : - K N L M H W D C G L Y Q L - R H E I C : Y K K T - . . . . . : . 4923 GAATCTGAGTTTCGGAATGCTTTTTCTCGTTCAACAATTCGG : GTGAAGGAACATGATTCT E S E F R N A F S R S T I R : V K E H D S N L S F G M L F L V Q Q F G : - R N M I L - I - V S E C F F S F N N S : G E G T - F . . . . . . 4749 AGAAGCCGCAGCCGCAGCCGTTCTTACTCGAGAGGAAAGAGTGGTAGCCGTAGCCGCAGT R S R S R S R S Y S R G K S G S R S R S E A A A A A V L T R E E R V V A V A A V - K P Q P Q P F L L E R K E W - P - P Q . . . : . . . 4689 CGAAGTTACAGTCGCAGCCGGAGCAGAAG : CAAATCTCCTAAAGCTAAGTCGTCAAAGCGT R S Y S R S R S R S : K S P K A K S S K R E V T V A A G A E : A N L L K L S R Q S V S K L Q S Q P E Q K : Q I S - S - V V K A . . . . . . 4541 ACAAGATCTCGTTCTAGATCTGTCTCTTCTCAGCCCCGTTCTGGGTTAAAAGGACGCTCT T R S R S R S V S S Q P R S G L K G R S Q D L V L D L S L L S P V L G - K D A L Y K I S F - I C L F S A P F W V K R T L . : . . . . : . 4481 TTGTCAAG : ATCTCCATCAAGATCCAGATCCCCAGTACCATCT : CGCCCAAAACGTGTGAGC L S R : S P S R S R S P V P S : R P K R V S C Q : D L H Q D P D P Q Y H L : A Q N V - A F V K : I S I K I Q I P S T I : S P K T C E . . . . . . 2514 AAAAGCCCAAAACCTCGCGACTCCAGGAGAAGCCAGAGCTTGAGTAAAAGCCCAAAACCT K S P K P R D S R R S Q S L S K S P K P K A Q N L A T P G E A R A - V K A Q N L Q K P K T S R L Q E K P E L E - K P K T . . . . . . 2454 CGTGATTCCAGGAGAAGCGAGAGTCCAAGCAAGAGCCCCAAACTGCGTGATTCCAGGAGA R D S R R S E S P S K S P K L R D S R R V I P G E A R V Q A R A P N C V I P G E S - F Q E K R E S K Q E P Q T A - F Q E . . . . . . 2394 AGCAAGAGCATGAGTAAAAGCCCCGAACCACGCAATTCCAGGAGGAGCCCCAGCAGGAGC S K S M S K S P E P R N S R R S P S R S A R A - V K A P N H A I P G G A P A G A K Q E H E - K P R T T Q F Q E E P Q Q E . . . . . . 2334 AAAAGCCCCAAACCACGCAATTCCAGGAGAAGCCCTAGCAGGAGCCGCAGCCGGAGTCGC K S P K P R N S R R S P S R S R S R S R K A P N H A I P G E A L A G A A A G V A Q K P Q T T Q F Q E K P - Q E P Q P E S . . : . . . . 2274 AGTGGGAGTTTGTCGAG : GTGAGAGCTATATTGTGGATTAAGCTGTTGCTGCAGGTGCGGA S G S L S R : - E L Y C G L S C C C R C G V G V C R : G E S Y I V D - A V A A G A E Q W E F V E : V R A I L W I K L L L Q V R . . . . . . 2104 GATAGAGAGTGTGCTGCTGTGCCTGAATAGAGCAGCTGAGCTGTTGGTGTCATCTTTTCC D R E C A A V P E - S S - A V G V I F S I E S V L L C L N R A A E L L V S S F P R - R V C C C A - I E Q L S C W C H L F . . . . . . 2044 GATAACTAGTCCTGATGAATGGCTTCTGAATTTTTTGGTCCATGACCAAAATAGAACTCA D N - S - - M A S E F F G P - P K - N S I T S P D E W L L N F L V H D Q N R T Q R - L V L M N G F - I F W S M T K I E L . . . . . . 1984 ACTGTGAACCTTTGACTTGGGGAAGACTGCAGTATTCTAGTATTTTAAGCAACTTTGCAG T V N L - L G E D C S I L V F - A T L Q L - T F D L G K T A V F - Y F K Q L C S N C E P L T W G R L Q Y S S I L S N F A . . . . . . 1924 CATGTATGATGGCAAAAATTGAAAATTATGTCTTGGATATTTGCAGATTTTGTTATTTGT H V - W Q K L K I M S W I F A D F V I C M Y D G K N - K L C L G Y L Q I L L F V A C M M A K I E N Y V L D I C R F C Y L . . . . . . 1864 TTCCTGCAGGTGAAATGCTACTTATGTAATGACATTGTCTGCACTCTTGTGACTTTGTAA F L Q V K C Y L C N D I V C T L V T L - S C R - N A T Y V M T L S A L L - L C K F P A G E M L L M - - H C L H S C D F V . . . . . . 1804 GTTCTTTTCCTGATGTGTGTCTGTTTTCCTGATGAATTAGGGTCGTAGGGAGGTTGGTGT V L F L M C V C F P D E L G S - G G W C F F S - C V S V F L M N - G R R E V G V S S F P D V C L F S - - I R V V G R L V . . . . . . 1744 TTTATGCAACCTTAAGCCCTGGTTTGCCGGTGCCATAGGGCAGTCACCTTTTATCTTTGT F M Q P - A L V C R C H R A V T F Y L C L C N L K P W F A G A I G Q S P F I F V F Y A T L S P G L P V P - G S H L L S L . . . . . . 1684 GATTGAAGGATGTTTATTACCCTTCTGTGAGTTATAACCCTTTCTTATCCCACTTTGAGA D - R M F I T L L - V I T L S Y P T L R I E G C L L P F C E L - P F L I P L - E - L K D V Y Y P S V S Y N P F L S H F E . . . 1624 AATAGAATTGACTAGTTCACAGAGTT N R I D - F T E I E L T S S Q S K - N - L V H R V Maximal non-overlapping open reading frames (>= 64 codons): >C06HBa0024L21.1-4-_PGL-2_AGS-1_PPS_1 (9237 9198,8412 8324,8236 8171,8073 7999,7620 7494,7412 7366,7258 7201,5100 5051,4938 4882,4767 4661,4572 4474,2738 2705,2532 2258,2147 2144) (frame '1'; 1125 bp, 375 residues) 1 ALCVFILHQS SSKGTMSRSS RTIYVGNLPG DIREREVEDL FYKYGPIAHI DLKIPPRPPG 61 YAFVEFEEAR DAEDAIRGRD GYEFDGHRLR VELAHGGRGN SSSDRYNSGN NSGHNGGRNN 121 HKFGAPKRTE YRVLVTGLPH SASWQDLKDH MRRAGDVCFS QVFREGSGTT GIVDYTNYDD 181 MKYAIKKLDE SEFRNAFSRS TIRVKEHDSR SRSRSRSYSR GKSGSRSRSR SYSRSRSRSK 241 SPKAKSSKRT RSRSRSVSSQ PRSGLKGRSL SRSPSRSRSP VPSRPKRVSK SPKPRDSRRS 301 QSLSKSPKPR DSRRSESPSK SPKLRDSRRS KSMSKSPEPR NSRRSPSRSK SPKPRNSRRS 361 PSRSRSRSRS GSLSR- AGS-2 (2892 2705,2532 2258,2147 1900) SCR (e 0.984 d 0.996 a 0.978,e 0.996 d 0.723 a 0.997,e 0.992) Exon 1 2892 2705 ( 188 n); score: 0.984 Intron 1 2704 2533 ( 172 n); Pd: 0.996 Pa: 0.978 Exon 2 2532 2258 ( 275 n); score: 0.996 Intron 2 2257 2148 ( 110 n); Pd: 0.723 Pa: 0.997 Exon 3 2147 1900 ( 248 n); score: 0.992 PGS (2892 2705,2532 2258,2147 1900) SGN-E542930- 3-phase translation of AGS-2 (-strand): . . . . . . 2892 GTTTTCTCTTTGGGATGGTGAAATGGTAACGGGTTTCTGCATGTCTACTTTGATTATGGC V F S L G W - N G N G F L H V Y F D Y G F S L W D G E M V T G F C M S T L I M A F L F G M V K W - R V S A C L L - L W . . . . . . 2832 CACTCCGACGTGGAAGTGGCATCAAGGCAGTCGGATGAAAGTTGTTAAGCGGAAGGTTGG H S D V E V A S R Q S D E S C - A E G W T P T W K W H Q G S R M K V V K R K V G P L R R G S G I K A V G - K L L S G R L . . . . . . 2772 ATATTAAATTGAGTTGTTTCTGGACATTTTGCAGATCTCCATCAAGATCCAGATCCCCAG I L N - V V S G H F A D L H Q D P D P Q Y - I E L F L D I L Q I S I K I Q I P S D I K L S C F W T F C R S P S R S R S P . : . . . . . 2712 TACCATCT : CGCCCAAAACGTGTGAGCAAAAGCCCAAAACCTCGCGACTCCAGGAGAAGCC Y H L : A Q N V - A K A Q N L A T P G E A T I : S P K T C E Q K P K T S R L Q E K P V P S : R P K R V S K S P K P R D S R R S . . . . . . 2480 AGAGCTTGAGTAAAAGCCCAAAACCTCGTGATTCCAGGAGAAGCGAGAGTCCAAGCAAGA R A - V K A Q N L V I P G E A R V Q A R E L E - K P K T S - F Q E K R E S K Q E Q S L S K S P K P R D S R R S E S P S K . . . . . . 2420 GCCCCAAACTGCGTGATTCCAGGAGAAGCAAGAGCATGAGTAAAAGCCCCGAACCACGCA A P N C V I P G E A R A - V K A P N H A P Q T A - F Q E K Q E H E - K P R T T Q S P K L R D S R R S K S M S K S P E P R . . . . . . 2360 ATTCCAGGAGGAGCCCCAGCAGGAGCAAAAGCCCCAAACCACGCAATTCCAGGAGAAGCC I P G G A P A G A K A P N H A I P G E A F Q E E P Q Q E Q K P Q T T Q F Q E K P N S R R S P S R S K S P K P R N S R R S . . . . . : . 2300 CTAGCAGGAGCCGCAGCCGGAGTCGCAGTGGGAGTTTGTCGAG : GTGAGAGCTATATTGTG L A G A A A G V A V G V C R : G E S Y I V - Q E P Q P E S Q W E F V E : V R A I L W P S R S R S R S R S G S L S R : - E L Y C . . . . . . 2130 GATTAAGCTGTTGCTGCAGGTGCGGAGATAGAGAGTGTGCTGCTGTGCCTGAATAGAGCA D - A V A A G A E I E S V L L C L N R A I K L L L Q V R R - R V C C C A - I E Q G L S C C C R C G D R E C A A V P E - S . . . . . . 2070 GCTGAGCTGTTGGTGTCATCTTTTCCGATAACTAGTCCTGATGAATGGCTTCTGAATTTT A E L L V S S F P I T S P D E W L L N F L S C W C H L F R - L V L M N G F - I F S - A V G V I F S D N - S - - M A S E F . . . . . . 2010 TTGGTCCATGACCAAAATAGAACTCAACTGTGAACCTTTGACTTGGGGAAGACTGCAGTA L V H D Q N R T Q L - T F D L G K T A V W S M T K I E L N C E P L T W G R L Q Y F G P - P K - N S T V N L - L G E D C S . . . . . . 1950 TTCTAGTATTTTAAGCAACTTTGCAGCATGTATGATGGCAAAAATTGAAAA F - Y F K Q L C S M Y D G K N - K S S I L S N F A A C M M A K I E I L V F - A T L Q H V - W Q K L K Maximal non-overlapping open reading frames (>= 64 codons): >C06HBa0024L21.1-4-_PGL-2_AGS-2_PPS_1 (2794 2705,2532 2258,2147 2144) (frame '0'; 366 bp, 122 residues) 1 KLLSGRLDIK LSCFWTFCRS PSRSRSPVPS RPKRVSKSPK PRDSRRSQSL SKSPKPRDSR 61 RSESPSKSPK LRDSRRSKSM SKSPEPRNSR RSPSRSKSPK PRNSRRSPSR SRSRSRSGSL 121 SR- AGS-3 (3930 3386) SCR (e 0.994) Exon 1 3930 3386 ( 545 n); score: 0.994 PGS (3930 3386) SGN-E270899+ 3-phase translation of AGS-3 (-strand): . . . . . . 3930 AACATTAAGGTTCTGATCCCTCATTCAGTTTGGATCAATATCGTCCTTCCAAAATTGTAA N I K V L I P H S V W I N I V L P K L - T L R F - S L I Q F G S I S S F Q N C K H - G S D P S F S L D Q Y R P S K I V . . . . . . 3870 GTGAACCTTTTGGAAATTTGTCAAGATTCTAGATCAACGTGCAATGGCTCAGTGGGTAAC V N L L E I C Q D S R S T C N G S V G N - T F W K F V K I L D Q R A M A Q W V T S E P F G N L S R F - I N V Q W L S G - . . . . . . 3810 TAAGCTGTCATTAGCTAATATGGTGCTCGTATTGTAGTTTTAATAGGCTTTATATTATGG - A V I S - Y G A R I V V L I G F I L W K L S L A N M V L V L - F - - A L Y Y G L S C H - L I W C S Y C S F N R L Y I M . . . . . . 3750 TGAGGTACAATTCTGCATCTTTTTTGGTGGCATAGAGATAGCCAATGTTAATTTCATTCT - G T I L H L F W W H R D S Q C - F H S E V Q F C I F F G G I E I A N V N F I L V R Y N S A S F L V A - R - P M L I S F . . . . . . 3690 GCTTCAGGGTGTCTCCGTCCAAAAAAACCCAGTCTGCTTCAGGGTGATAGATCTTTTTGA A S G C L R P K K P S L L Q G D R S F - L Q G V S V Q K N P V C F R V I D L F E C F R V S P S K K T Q S A S G - - I F L . . . . . . 3630 ACCTAAGCAATGTCAAACCATTTGATAAACCAGACAAGCTAGGGAACATCACAAGTGCAG T - A M S N H L I N Q T S - G T S Q V Q P K Q C Q T I - - T R Q A R E H H K C R N L S N V K P F D K P D K L G N I T S A . . . . . . 3570 AGTCCTGTACATCAGGATTGTTCTTCTTCTTCTAATTATGCTGTGTCTAACTGTAATTGC S P V H Q D C S S S S N Y A V S N C N C V L Y I R I V L L L L I M L C L T V I A E S C T S G L F F F F - L C C V - L - L . . . . . . 3510 GGCTATCAAATATGTGGTCAACTGGTCATTCAGTTATGAAAAGATGTCTAGATACTGCAT G Y Q I C G Q L V I Q L - K D V - I L H A I K Y V V N W S F S Y E K M S R Y C I R L S N M W S T G H S V M K R C L D T A . . . . . . 3450 TTCAGAATCCATTAGGAACAAAATAGTTGTTGGGTGTTGGATGTAGAAGTTGGTTCTTCC F R I H - E Q N S C W V L D V E V G S S S E S I R N K I V V G C W M - K L V L P F Q N P L G T K - L L G V G C R S W F F . 3390 TATGC Y M L C Maximal non-overlapping open reading frames (>= 64 codons): >C06HBa0024L21.1-4-_PGL-2_AGS-3_PPS_1 (3602 3405) (frame '2'; 195 bp, 65 residues) 1 TRQAREHHKC RVLYIRIVLL LLIMLCLTVI AAIKYVVNWS FSYEKMSRYC ISESIRNKIV 61 VGCWM- 3-phase translation of AGS-3 (+strand): . . . . . . 3386 GCATAGGAAGAACCAACTTCTACATCCAACACCCAACAACTATTTTGTTCCTAATGGATT A - E E P T S T S N T Q Q L F C S - W I H R K N Q L L H P T P N N Y F V P N G F I G R T N F Y I Q H P T T I L F L M D . . . . . . 3446 CTGAAATGCAGTATCTAGACATCTTTTCATAACTGAATGACCAGTTGACCACATATTTGA L K C S I - T S F H N - M T S - P H I - - N A V S R H L F I T E - P V D H I F D S E M Q Y L D I F S - L N D Q L T T Y L . . . . . . 3506 TAGCCGCAATTACAGTTAGACACAGCATAATTAGAAGAAGAAGAACAATCCTGATGTACA - P Q L Q L D T A - L E E E E Q S - C T S R N Y S - T Q H N - K K K N N P D V Q I A A I T V R H S I I R R R R T I L M Y . . . . . . 3566 GGACTCTGCACTTGTGATGTTCCCTAGCTTGTCTGGTTTATCAAATGGTTTGACATTGCT G L C T C D V P - L V W F I K W F D I A D S A L V M F P S L S G L S N G L T L L R T L H L - C S L A C L V Y Q M V - H C . . . . . . 3626 TAGGTTCAAAAAGATCTATCACCCTGAAGCAGACTGGGTTTTTTTGGACGGAGACACCCT - V Q K D L S P - S R L G F F G R R H P R F K K I Y H P E A D W V F L D G D T L L G S K R S I T L K Q T G F F W T E T P . . . . . . 3686 GAAGCAGAATGAAATTAACATTGGCTATCTCTATGCCACCAAAAAAGATGCAGAATTGTA E A E - N - H W L S L C H Q K R C R I V K Q N E I N I G Y L Y A T K K D A E L Y - S R M K L T L A I S M P P K K M Q N C . . . . . . 3746 CCTCACCATAATATAAAGCCTATTAAAACTACAATACGAGCACCATATTAGCTAATGACA P H H N I K P I K T T I R A P Y - L M T L T I I - S L L K L Q Y E H H I S - - Q T S P - Y K A Y - N Y N T S T I L A N D . . . . . . 3806 GCTTAGTTACCCACTGAGCCATTGCACGTTGATCTAGAATCTTGACAAATTTCCAAAAGG A - L P T E P L H V D L E S - Q I S K R L S Y P L S H C T L I - N L D K F P K G S L V T H - A I A R - S R I L T N F Q K . . . . . . 3866 TTCACTTACAATTTTGGAAGGACGATATTGATCCAAACTGAATGAGGGATCAGAACCTTA F T Y N F G R T I L I Q T E - G I R T L S L T I L E G R Y - S K L N E G S E P - V H L Q F W K D D I D P N - M R D Q N L . 3926 ATGTT M C N V Maximal non-overlapping open reading frames (>= 64 codons): >C06HBa0024L21.1-4+_PGL-2_AGS-3_PPS_1 (3540 3761) (frame '2'; 219 bp, 73 residues) 1 KKKNNPDVQD SALVMFPSLS GLSNGLTLLR FKKIYHPEAD WVFLDGDTLK QNEINIGYLY 61 ATKKDAELYL TII- AGS-4 (5077 5051,4938 4882,4767 4661,4572 4080) SCR (e 1.000 d 0.999 a 0.959,e 1.000 d 0.871 a 0.999,e 1.000 d 1.000 a 0.429,e 0.995) Exon 1 5077 5051 ( 27 n); score: 1.000 Intron 1 5050 4939 ( 112 n); Pd: 0.999 Pa: 0.959 Exon 2 4938 4882 ( 57 n); score: 1.000 Intron 2 4881 4768 ( 114 n); Pd: 0.871 Pa: 0.999 Exon 3 4767 4661 ( 107 n); score: 1.000 Intron 3 4660 4573 ( 88 n); Pd: 1.000 Pa: 0.429 Exon 4 4572 4080 ( 493 n); score: 0.995 PGS (5077 5051,4938 4882,4767 4661,4572 4080) SGN-E542931+ PGS (5076 5051,4938 4882,4767 4661,4572 4180) SGN-E303030+ 3-phase translation of AGS-4 (-strand): . . . : . . . 5077 ACCAACTATGACGACATGAAATATGCT : ATAAAAAAACTTGATGAATCTGAGTTTCGGAAT T N Y D D M K Y A : I K K L D E S E F R N P T M T T - N M L : - K N L M N L S F G M Q L - R H E I C : Y K K T - - I - V S E . . . : . . . 4905 GCTTTTTCTCGTTCAACAATTCGG : GTGAAGGAACATGATTCTAGAAGCCGCAGCCGCAGC A F S R S T I R : V K E H D S R S R S R S L F L V Q Q F G : - R N M I L E A A A A A C F F S F N N S : G E G T - F - K P Q P Q . . . . . . 4731 CGTTCTTACTCGAGAGGAAAGAGTGGTAGCCGTAGCCGCAGTCGAAGTTACAGTCGCAGC R S Y S R G K S G S R S R S R S Y S R S V L T R E E R V V A V A A V E V T V A A P F L L E R K E W - P - P Q S K L Q S Q . . : . . . . 4671 CGGAGCAGAAG : CAAATCTCCTAAAGCTAAGTCGTCAAAGCGTACAAGATCTCGTTCTAGA R S R S : K S P K A K S S K R T R S R S R G A E : A N L L K L S R Q S V Q D L V L D P E Q K : Q I S - S - V V K A Y K I S F - . . . . . . 4523 TCTGTCTCTTCTCAGCCCCGTTCTGGGTTAAAAGGACGCTCTTTGTCAAGGTAATCTTTC S V S S Q P R S G L K G R S L S R - S F L S L L S P V L G - K D A L C Q G N L S I C L F S A P F W V K R T L F V K V I F . . . . . . 4463 TTACTGGTCATATCTACCCATTTTGTTGTTGGGGCAGGTTATGTAAAAGTAGCATATAGT L L V I S T H F V V G A G Y V K V A Y S Y W S Y L P I L L L G Q V M - K - H I V L T G H I Y P F C C W G R L C K S S I - . . . . . . 4403 ACAAGGTTAATGTATATTTTTATGCAAGTCCTTGTACTGGTCTTTTTTTGAGTCAAAAGT T R L M Y I F M Q V L V L V F F - V K S Q G - C I F L C K S L Y W S F F E S K V Y K V N V Y F Y A S P C T G L F L S Q K . . . . . . 4343 CCTTGTGTCTATCAGTTTATCTTAATCATTTTAATCTTTTCTTTGTGAAAGCCACCTGGG P C V Y Q F I L I I L I F S L - K P P G L V S I S L S - S F - S F L C E S H L G S L C L S V Y L N H F N L F F V K A T W . . . . . . 4283 AATTAACTGTTGCATCTTGCACCTCATTTATTTAGTGGGAAATCAGCTGAGCACTTTGTT N - L L H L A P H L F S G K S A E H F V I N C C I L H L I Y L V G N Q L S T L F E L T V A S C T S F I - W E I S - A L C . . . . . . 4223 TCCAACCCTTAATCTTGACTAGACTTTGTATAGTTGTGGACATGAGATGGCTTTGAAGCA S N P - S - L D F V - L W T - D G F E A P T L N L D - T L Y S C G H E M A L K Q F Q P L I L T R L C I V V D M R W L - S . . . . . . 4163 AAAAGTTGTTTTGCAGTGTGACCAATTTAACATTTTCACACAAGTTGGTTGTAAATTTCA K S C F A V - P I - H F H T S W L - I S K V V L Q C D Q F N I F T Q V G C K F H K K L F C S V T N L T F S H K L V V N F . . . 4103 CAAATTCAAATTGCAAATTGCATC Q I Q I A N C I K F K L Q I A T N S N C K L H Maximal non-overlapping open reading frames (>= 64 codons): >C06HBa0024L21.1-4-_PGL-2_AGS-4_PPS_1 (5077 5051,4938 4882,4767 4661,4572 4470) (frame '1'; 291 bp, 97 residues) 1 TNYDDMKYAI KKLDESEFRN AFSRSTIRVK EHDSRSRSRS RSYSRGKSGS RSRSRSYSRS 61 RSRSKSPKAK SSKRTRSRSR SVSSQPRSGL KGRSLSR- AGS-5 (8209 8171,8073 7999,7620 7494,7412 7366,7258 7201,5100 5051,4938 4882,4778 4661,4578 4543) SCR (e 0.974 d 0.999 a 0.998,e 0.880 d 0.996 a 0.996,e 0.661 d 0.994 a 0.994,e 0.915 d 0.700 a 0.998,e 0.914 d 0.922 a 0.926,e 0.860 d 0.999 a 0.959,e 0.860 d 0.871 a 0.000,e 0.686 d 1.000 a 0.000,e 0.861) Exon 1 8209 8171 ( 39 n); score: 0.974 Intron 1 8170 8074 ( 97 n); Pd: 0.999 Pa: 0.998 Exon 2 8073 7999 ( 75 n); score: 0.880 Intron 2 7998 7621 ( 378 n); Pd: 0.996 Pa: 0.996 Exon 3 7620 7494 ( 127 n); score: 0.661 Intron 3 7493 7413 ( 81 n); Pd: 0.994 Pa: 0.994 Exon 4 7412 7366 ( 47 n); score: 0.915 Intron 4 7365 7259 ( 107 n); Pd: 0.700 Pa: 0.998 Exon 5 7258 7201 ( 58 n); score: 0.914 Intron 5 7200 5101 (2100 n); Pd: 0.922 Pa: 0.926 Exon 6 5100 5051 ( 50 n); score: 0.860 Intron 6 5050 4939 ( 112 n); Pd: 0.999 Pa: 0.959 Exon 7 4938 4882 ( 57 n); score: 0.860 Intron 7 4881 4779 ( 103 n); Pd: 0.871 Pa: 0.000 Exon 8 4778 4661 ( 118 n); score: 0.686 Intron 8 4660 4579 ( 82 n); Pd: 1.000 Pa: 0.000 Exon 9 4578 4543 ( 36 n); score: 0.861 PGS (8209 8171,8073 7999,7620 7494,7412 7366,7258 7201,5100 5051,4938 4882,4778 4661,4578 4543) SGN-E253820+ 3-phase translation of AGS-5 (-strand): . . . . : . . 8209 AAAATTCCACCAAGACCCCCAGGTTATGCTTTTGTTGAG : TTTGAAGAGGCACGCGATGCT K I P P R P P G Y A F V E : F E E A R D A K F H Q D P Q V M L L L S : L K R H A M L N S T K T P R L C F C - : V - R G T R C . . . . . . : 8052 GAGGATGCTATTCGTGGGCGCGATGGCTATGAATTTGATGGGCATCGTTTGAGG : GTTGAG E D A I R G R D G Y E F D G H R L R : V E R M L F V G A M A M N L M G I V - G : L S - G C Y S W A R W L - I - W A S F E : G - . . . . . . 7614 CTTGCACATGGTGGGCGTGGTAACTCATCGTCAGATCGTTATAATAGTGGCAATAATAGT L A H G G R G N S S S D R Y N S G N N S L H M V G V V T H R Q I V I I V A I I V A C T W W A W - L I V R S L - - W Q - - . . . . . . 7554 GGCCATAATGGTGGTCGTAATAATCACAAATTTGGAGCGCCCAAACGTACCGAGTATCGA G H N G G R N N H K F G A P K R T E Y R A I M V V V I I T N L E R P N V P S I E W P - W W S - - S Q I W S A Q T Y R V S . : . . . . : . 7494 G : TTTTAGTTACCGGATTGCCCCATTCAGCATCCTGGCAGGATCTCAAG : GATCATATGCGT : V L V T G L P H S A S W Q D L K : D H M R : F - L P D C P I Q H P G R I S R : I I C V S : F S Y R I A P F S I L A G S Q : G S Y A . . . . . : . 7246 CGAGCTGGGGATGTTTGTTTCTCACAAGTTTTCCGTGAGGGGAGTG : GGACCACTGGGATT R A G D V C F S Q V F R E G S : G T T G I E L G M F V S H K F S V R G V : G P L G L S S W G C L F L T S F P - G E W : D H W D . . . . : . . 5086 GTGGATTATACCAACTATGACGACATGAAATATGCT : ATAAAAAAACTTGATGAATCTGAG V D Y T N Y D D M K Y A : I K K L D E S E W I I P T M T T - N M L : - K N L M N L S C G L Y Q L - R H E I C : Y K K T - - I - . . . . : . . 4914 TTTCGGAATGCTTTTTCTCGTTCAACAATTCGG : GTCTTATGTAGGTGAAGGAACATGATT F R N A F S R S T I R : V L C R - R N M I F G M L F L V Q Q F G : S Y V G E G T - F V S E C F F S F N N S : G L M - V K E H D . . . . . . 4751 CTAGAAGCCGCAGCCGCAGCCGTTCTTACTCGAGAGGAAAGAGTGGTAGCCGTAGCCGCA L E A A A A A V L T R E E R V V A V A A - K P Q P Q P F L L E R K E W - P - P Q S R S R S R S R S Y S R G K S G S R S R . . . . : . . 4691 GTCGAAGTTACAGTCGCAGCCGGAGCAGAAG : TAGCAGCAAATCTCCTAAAGCTAAGTCGT V E V T V A A G A E : V A A N L L K L S R S K L Q S Q P E Q K : - Q Q I S - S - V V S R S Y S R S R S R S : S S K S P K A K S . 4549 CAAAGCG Q S K A S K Maximal non-overlapping open reading frames (>= 64 codons): >C06HBa0024L21.1-4-_PGL-2_AGS-5_PPS_1 (8209 8171,8073 7999,7620 7494,7412 7366,7258 7201,5100 5051,4938 4882,4778 4764) (frame '1'; 465 bp, 155 residues) 1 KIPPRPPGYA FVEFEEARDA EDAIRGRDGY EFDGHRLRVE LAHGGRGNSS SDRYNSGNNS 61 GHNGGRNNHK FGAPKRTEYR VLVTGLPHSA SWQDLKDHMR RAGDVCFSQV FREGSGTTGI 121 VDYTNYDDMK YAIKKLDESE FRNAFSRSTI RVLCR- ... finished at: Mon Jul 24 23:17:34 2006 ________________________________________________________________________________ Sequence 5: C06HBa0024L21.1-5, from 1 to 3329, both strands analyzed. ... started at: Mon Jul 24 23:17:34 2006 EST library file: /tmp/cxgn-bacpublish-resources-MvEQ8q/sgn_ests; matching gDNA +strand ... ... found all matches, elapsed seconds = 6 ... matches indexed, elapsed seconds = 7 HitsTableSize = 3 EST library file: /tmp/cxgn-bacpublish-resources-MvEQ8q/sgn_ests; matching gDNA -strand ... ... found all matches, elapsed seconds = 6 ... matches indexed, elapsed seconds = 6 HitsTableSize = 30 ******************************************************************************** EST sequence 1 -strand 672 n (File: SGN-E389536-) 1 ATATCAGTTT CATATTATGG GTGAAGTGCA CGCGCTCTAC TAAGTAAAAT CTCAGTTTCA 61 TATTGATGAC ATGTCATATA ATTATTTTTT TATTTTTTTT ACTTTTCCAC ATCTTTTAAA 121 TAATTTATTT TTCACTCTTC ACCTATGCTC TTCATTTCAC TTGGGTCAAT TTCTTAAGAT 181 TCAAAATTTA ATATTGATTG ATTCCTTTTA TTTTTTATTA TTTTGTAATT ATTTACTATT 241 ACTTCCATCA ATTCTTATAT CAGTCACCAT ATTTTTTTTC CCAACTAGAT GAAACTATCA 301 ATTCATATCG ATATGGCGAT TTTAAATTTA TGTAAAATTG ATATGCTAAT TTTTTTGATT 361 AGTTGTTGAT TTAGTTATTT CATTTCTTAA TCCATATTCA GGTATAGATT AAGTATCATT 421 ATAGTTAAAT AAATAATTAT TTTGTTAAGG AAAATCAAAT CTCAAAAGTA AAGAATAAAG 481 AATATTATGT GGGGCTTAAA TGTGATTTTC TATTTTTGTA TAGCCAAAAA ATATATAGAA 541 TGTAGAGTTT GATGAAGAGA AAGAGGATGG GTCGATGTTG GGATAGGATG TGGTGAGTCT 601 TGGATAGTTT CAAGTAGGAG AAACAAGCAC GGATATGGGG GTTTTGAGAA ACGGGCAGAG 661 GTATTTGAAG AA Predicted gene structure (within gDNA segment 2338 to 269): Exon 1 1728 1058 ( 671 n); cDNA 1 672 ( 672 n); score: 0.983 MATCH C06HBa0024L21.1-5- SGN-E389536- 0.983 671 0.999 C PGS_C06HBa0024L21.1-5-_SGN-E389536- (1728 1058) Alignment (genomic DNA sequence = upper lines): ATATCAGTTT CATATTATGG GTGAAGTGCA CGCGCTCTAC TAAGTAAAAT CTCAGTTTCA 1669 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATATCAGTTT CATATTATGG GTGAAGTGCA CGCGCTCTAC TAAGTAAAAT CTCAGTTTCA 60 TATTGATGAC ATGTCATATA ATTATTTTTT TATTTTTTTT ACTTTTCCAC ATCTTTTAAA 1609 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATTGATGAC ATGTCATATA ATTATTTTTT TATTTTTTTT ACTTTTCCAC ATCTTTTAAA 120 TAATTTATTT TTCACTCTTC ACCTATGCTC TTCATTTCAC TTGGGTCAAT TTCTTAAGAT 1549 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAATTTATTT TTCACTCTTC ACCTATGCTC TTCATTTCAC TTGGGTCAAT TTCTTAAGAT 180 TCAAAATTTA ATATTGATTG ATTCCTTTTA TTTTTTATTA TTTTGTAATT ATTTACTATT 1489 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCAAAATTTA ATATTGATTG ATTCCTTTTA TTTTTTATTA TTTTGTAATT ATTTACTATT 240 ACTTCCATCA ATACTTATAT CAGTCACCAT ATTTTTTTTC CCAACTAGAT GAAACTATCA 1429 |||||||||| || ||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACTTCCATCA ATTCTTATAT CAGTCACCAT ATTTTTTTTC CCAACTAGAT GAAACTATCA 300 ATTCATATCG ATATGGCGAT TTTAAATTTA TGTAAAATTG ATATGCTAAT TTTTTTGATT 1369 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTCATATCG ATATGGCGAT TTTAAATTTA TGTAAAATTG ATATGCTAAT TTTTTTGATT 360 AGTTGTTGAT TTAGTTATTT CATTTCTTAA TCCATATTCA GGTATAGATT AAGTAACATT 1309 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||| |||| AGTTGTTGAT TTAGTTATTT CATTTCTTAA TCCATATTCA GGTATAGATT AAGTATCATT 420 ATAGTTAAAT AAATAATTAT TTTGTTAAGG AAAATCAAAT CTCAAAAGTA AAGAATAAAG 1249 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATAGTTAAAT AAATAATTAT TTTGTTAAGG AAAATCAAAT CTCAAAAGTA AAGAATAAAG 480 AATATTATGT GGGGCTTAAA TGTGATTTTC TATTTTTGTA TAGCCAAAAA ATATATAGAA 1189 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATATTATGT GGGGCTTAAA TGTGATTTTC TATTTTTGTA TAGCCAAAAA ATATATAGAA 540 TGTAGAGTTT GATGAAGAGA AAGAGGATGG GTCGATGTTG GGATAGGATG TGGTGAGACT 1129 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||| || TGTAGAGTTT GATGAAGAGA AAGAGGATGG GTCGATGTTG GGATAGGATG TGGTGAGTCT 600 TGG-GAGTTT CAAGAAGAAG AAACAAGCAC GGATATGGGG GTTTTGAGAA AGGGGTAGAG 1070 ||| ||||| |||| || || |||||||||| |||||||||| |||||||||| | ||| |||| TGGATAGTTT CAAGTAGGAG AAACAAGCAC GGATATGGGG GTTTTGAGAA ACGGGCAGAG 660 GAATTTGAAG AA 1058 | |||||||| || GTATTTGAAG AA 672 hqPGS_C06HBa0024L21.1-5-_SGN-E389536- (1728 1058) ******************************************************************************** EST sequence 7 +strand 647 n (File: SGN-E389796+) 1 ACAATATCAG TTTCATATTA TGGGTGAAGT GCACGCGCTC TACTAAGTAA AATCTCAGTT 61 TCATATTGAT GACATGTCAT ATAATTATTT TTTTATTTTT TTTACTTTTC CACATCTTTT 121 AAATAATTTA TTTTTCACTC TTCACCTATG CTCTTCATTT CACTTGGGTC AATTTCTTAA 181 GATTCAAAAT TTAATATTGA TTGATTCCTT TTATTTTTTA TTATTTTGTA ATTATTTACT 241 ATTACTTCCA TCAATACTTA TATCAGTCAC CATATTTTTT TTCCCAACTA GATGAAACTA 301 TCAATTCATA TCGATATGGC GATTTTAAAT TTATGTAAAA TTGATATGCT AATTTTTTTG 361 ATTAGTTGTT GATTTAGTTA TTTCATTTCT TAATCCATAT TCAGGTATAG ATTAAGTAAC 421 ATTATAGTTA AATAAATAAT TATTTTGTTA AGGAAAATCA AATCTCAAAA GTAAAGAATA 481 AAGAATATTA TGTGGGGCTT AAATGTGATT TTCTATTTTT GTATAGCCAA AAAATATATA 541 GAATGTAGAG TTTGATGAAG AGAAAGAGGA TGGGTCGATG TTGGGATAGG ATGTGGTGAG 601 ACTTGGGAGT TTCAAGAAGA AGAACAAGCA CGGATATGGG GGTTTTG Predicted gene structure (within gDNA segment 2331 to 474): Exon 1 1731 1084 ( 648 n); cDNA 1 647 ( 647 n); score: 0.998 MATCH C06HBa0024L21.1-5- SGN-E389796+ 0.998 648 1.002 C PGS_C06HBa0024L21.1-5-_SGN-E389796+ (1731 1084) Alignment (genomic DNA sequence = upper lines): ACAATATCAG TTTCATATTA TGGGTGAAGT GCACGCGCTC TACTAAGTAA AATCTCAGTT 1672 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACAATATCAG TTTCATATTA TGGGTGAAGT GCACGCGCTC TACTAAGTAA AATCTCAGTT 60 TCATATTGAT GACATGTCAT ATAATTATTT TTTTATTTTT TTTACTTTTC CACATCTTTT 1612 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCATATTGAT GACATGTCAT ATAATTATTT TTTTATTTTT TTTACTTTTC CACATCTTTT 120 AAATAATTTA TTTTTCACTC TTCACCTATG CTCTTCATTT CACTTGGGTC AATTTCTTAA 1552 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAATAATTTA TTTTTCACTC TTCACCTATG CTCTTCATTT CACTTGGGTC AATTTCTTAA 180 GATTCAAAAT TTAATATTGA TTGATTCCTT TTATTTTTTA TTATTTTGTA ATTATTTACT 1492 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATTCAAAAT TTAATATTGA TTGATTCCTT TTATTTTTTA TTATTTTGTA ATTATTTACT 240 ATTACTTCCA TCAATACTTA TATCAGTCAC CATATTTTTT TTCCCAACTA GATGAAACTA 1432 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTACTTCCA TCAATACTTA TATCAGTCAC CATATTTTTT TTCCCAACTA GATGAAACTA 300 TCAATTCATA TCGATATGGC GATTTTAAAT TTATGTAAAA TTGATATGCT AATTTTTTTG 1372 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCAATTCATA TCGATATGGC GATTTTAAAT TTATGTAAAA TTGATATGCT AATTTTTTTG 360 ATTAGTTGTT GATTTAGTTA TTTCATTTCT TAATCCATAT TCAGGTATAG ATTAAGTAAC 1312 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTAGTTGTT GATTTAGTTA TTTCATTTCT TAATCCATAT TCAGGTATAG ATTAAGTAAC 420 ATTATAGTTA AATAAATAAT TATTTTGTTA AGGAAAATCA AATCTCAAAA GTAAAGAATA 1252 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTATAGTTA AATAAATAAT TATTTTGTTA AGGAAAATCA AATCTCAAAA GTAAAGAATA 480 AAGAATATTA TGTGGGGCTT AAATGTGATT TTCTATTTTT GTATAGCCAA AAAATATATA 1192 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGAATATTA TGTGGGGCTT AAATGTGATT TTCTATTTTT GTATAGCCAA AAAATATATA 540 GAATGTAGAG TTTGATGAAG AGAAAGAGGA TGGGTCGATG TTGGGATAGG ATGTGGTGAG 1132 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAATGTAGAG TTTGATGAAG AGAAAGAGGA TGGGTCGATG TTGGGATAGG ATGTGGTGAG 600 ACTTGGGAGT TTCAAGAAGA AGAAACAAGC ACGGATATGG GGGTTTTG 1084 |||||||||| |||||||||| || ||||||| |||||||||| |||||||| ACTTGGGAGT TTCAAGAAGA AG-AACAAGC ACGGATATGG GGGTTTTG 647 hqPGS_C06HBa0024L21.1-5-_SGN-E389796+ (1731 1084) ******************************************************************************** EST sequence 19 +strand 628 n (File: SGN-E375129+) 1 CAATATCAGT TTCATATTAT GGGTGAAGTG CACGCGCTCT ACTAAGTAAA ATCTCAGTTT 61 CATATTGATG ACATGTCATA TAATTATTTT TTTATTTTTT TTACTTTTCC ACATCTTTTA 121 AATAATTTAT TTTTCACTCT TCACCTATGC TCTTCATTTC ACTTGGGTCA ATTTCTTAAG 181 ATTCAAAATT TAATATTGAT TGATTCCTTT TATTTTTTAT TATTTTGTAA TTATTTACTA 241 TTACTTCCAT CAATACTTAT ATCAGTCACC ATATTTTTTT TCCCAACTAG ATGAAACTAT 301 CAATTCATAT CGATATGGCG ATTTTAAATT TATGTAAAAT TGATATGCTA ATTTTTTTGA 361 TTAGTTGTTG ATTTAGTTAT TTCATTTCTT AATCCATATT CAGGTATAGA TTAAGTAACA 421 TTATAGTTAA ATAAATAATT ATTTTGTTAA GGAAAATCAA ATCTCAAAAG TAAAGAATAA 481 AGAATATTAT GTGGGGCTTA AATGTGATTT TCTATTTTTG TATAGCCAAA AAATATATAG 541 AATGTAGAGT TTGATGAAGA GAAAGAGGAT GGGTCGATGT TGGGATAGGA TGTGGTGAGA 601 CTTGGGAGTT TCAAGAAGAA AAAACAAG Predicted gene structure (within gDNA segment 2330 to 421): Exon 1 1730 1103 ( 628 n); cDNA 1 628 ( 628 n); score: 0.998 MATCH C06HBa0024L21.1-5- SGN-E375129+ 0.998 628 1.000 C PGS_C06HBa0024L21.1-5-_SGN-E375129+ (1730 1103) Alignment (genomic DNA sequence = upper lines): CAATATCAGT TTCATATTAT GGGTGAAGTG CACGCGCTCT ACTAAGTAAA ATCTCAGTTT 1671 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAATATCAGT TTCATATTAT GGGTGAAGTG CACGCGCTCT ACTAAGTAAA ATCTCAGTTT 60 CATATTGATG ACATGTCATA TAATTATTTT TTTATTTTTT TTACTTTTCC ACATCTTTTA 1611 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATATTGATG ACATGTCATA TAATTATTTT TTTATTTTTT TTACTTTTCC ACATCTTTTA 120 AATAATTTAT TTTTCACTCT TCACCTATGC TCTTCATTTC ACTTGGGTCA ATTTCTTAAG 1551 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATAATTTAT TTTTCACTCT TCACCTATGC TCTTCATTTC ACTTGGGTCA ATTTCTTAAG 180 ATTCAAAATT TAATATTGAT TGATTCCTTT TATTTTTTAT TATTTTGTAA TTATTTACTA 1491 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTCAAAATT TAATATTGAT TGATTCCTTT TATTTTTTAT TATTTTGTAA TTATTTACTA 240 TTACTTCCAT CAATACTTAT ATCAGTCACC ATATTTTTTT TCCCAACTAG ATGAAACTAT 1431 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTACTTCCAT CAATACTTAT ATCAGTCACC ATATTTTTTT TCCCAACTAG ATGAAACTAT 300 CAATTCATAT CGATATGGCG ATTTTAAATT TATGTAAAAT TGATATGCTA ATTTTTTTGA 1371 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAATTCATAT CGATATGGCG ATTTTAAATT TATGTAAAAT TGATATGCTA ATTTTTTTGA 360 TTAGTTGTTG ATTTAGTTAT TTCATTTCTT AATCCATATT CAGGTATAGA TTAAGTAACA 1311 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTAGTTGTTG ATTTAGTTAT TTCATTTCTT AATCCATATT CAGGTATAGA TTAAGTAACA 420 TTATAGTTAA ATAAATAATT ATTTTGTTAA GGAAAATCAA ATCTCAAAAG TAAAGAATAA 1251 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTATAGTTAA ATAAATAATT ATTTTGTTAA GGAAAATCAA ATCTCAAAAG TAAAGAATAA 480 AGAATATTAT GTGGGGCTTA AATGTGATTT TCTATTTTTG TATAGCCAAA AAATATATAG 1191 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAATATTAT GTGGGGCTTA AATGTGATTT TCTATTTTTG TATAGCCAAA AAATATATAG 540 AATGTAGAGT TTGATGAAGA GAAAGAGGAT GGGTCGATGT TGGGATAGGA TGTGGTGAGA 1131 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATGTAGAGT TTGATGAAGA GAAAGAGGAT GGGTCGATGT TGGGATAGGA TGTGGTGAGA 600 CTTGGGAGTT TCAAGAAGAA GAAACAAG 1103 |||||||||| |||||||||| ||||||| CTTGGGAGTT TCAAGAAGAA AAAACAAG 628 hqPGS_C06HBa0024L21.1-5-_SGN-E375129+ (1730 1103) ******************************************************************************** EST sequence 13 +strand 598 n (File: SGN-E231883+) 1 CAATATCAGT TTCATATTAT GGGTGAAGTG CACGCGCTCT ACTAAGTAAA ATCTCAGTTT 61 CATATTGATG ACATGTCATA TAATTATTTT TTTATTTTTT TTACTTTTCC ACATCTTTTA 121 AATAATTTAT TTTTCACTCT TCACCTATGC TCTTCATTTC ACTTGGGTCA ATTTCTTAAG 181 ATTCAAAATT TAATATTGAT TGATTCCTTT TATTTTTTAT TATTTTGTAA TTATTTACTA 241 TTACTTCCAT CAATACTTAT ATCAGTCACC ATATTTTTTT TCCCAACTAG ATGAAACTAT 301 CAATTCATAT CGATATGGCG ATTTTAAATT TATGTAAAAT TGATATGCTA ATTTTTTTGA 361 TTAGTTGTTG ATTTAGTTAT TTCATTTCTT AATCCATATT CAGGTATAGA TTAAGTAACA 421 TTATAGTTAA ATAAATAATT ATTTTGTTAA GGAAAATCAA ATCTCAAAAG TAAAGAATAA 481 AGAATATTAT GTGGGGCTTA AATGTGATTT TCTATTTTTG TATAGCCAAA AAATATATAG 541 AATGTAGAGT TTGATGAAGA GAAAGAGGAT GGGTCGATGT TGGGATAGGA TGTGGTGA Predicted gene structure (within gDNA segment 2330 to 523): Exon 1 1730 1133 ( 598 n); cDNA 1 598 ( 598 n); score: 1.000 MATCH C06HBa0024L21.1-5- SGN-E231883+ 1.000 598 1.000 C PGS_C06HBa0024L21.1-5-_SGN-E231883+ (1730 1133) Alignment (genomic DNA sequence = upper lines): CAATATCAGT TTCATATTAT GGGTGAAGTG CACGCGCTCT ACTAAGTAAA ATCTCAGTTT 1671 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAATATCAGT TTCATATTAT GGGTGAAGTG CACGCGCTCT ACTAAGTAAA ATCTCAGTTT 60 CATATTGATG ACATGTCATA TAATTATTTT TTTATTTTTT TTACTTTTCC ACATCTTTTA 1611 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATATTGATG ACATGTCATA TAATTATTTT TTTATTTTTT TTACTTTTCC ACATCTTTTA 120 AATAATTTAT TTTTCACTCT TCACCTATGC TCTTCATTTC ACTTGGGTCA ATTTCTTAAG 1551 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATAATTTAT TTTTCACTCT TCACCTATGC TCTTCATTTC ACTTGGGTCA ATTTCTTAAG 180 ATTCAAAATT TAATATTGAT TGATTCCTTT TATTTTTTAT TATTTTGTAA TTATTTACTA 1491 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTCAAAATT TAATATTGAT TGATTCCTTT TATTTTTTAT TATTTTGTAA TTATTTACTA 240 TTACTTCCAT CAATACTTAT ATCAGTCACC ATATTTTTTT TCCCAACTAG ATGAAACTAT 1431 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTACTTCCAT CAATACTTAT ATCAGTCACC ATATTTTTTT TCCCAACTAG ATGAAACTAT 300 CAATTCATAT CGATATGGCG ATTTTAAATT TATGTAAAAT TGATATGCTA ATTTTTTTGA 1371 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAATTCATAT CGATATGGCG ATTTTAAATT TATGTAAAAT TGATATGCTA ATTTTTTTGA 360 TTAGTTGTTG ATTTAGTTAT TTCATTTCTT AATCCATATT CAGGTATAGA TTAAGTAACA 1311 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTAGTTGTTG ATTTAGTTAT TTCATTTCTT AATCCATATT CAGGTATAGA TTAAGTAACA 420 TTATAGTTAA ATAAATAATT ATTTTGTTAA GGAAAATCAA ATCTCAAAAG TAAAGAATAA 1251 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTATAGTTAA ATAAATAATT ATTTTGTTAA GGAAAATCAA ATCTCAAAAG TAAAGAATAA 480 AGAATATTAT GTGGGGCTTA AATGTGATTT TCTATTTTTG TATAGCCAAA AAATATATAG 1191 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAATATTAT GTGGGGCTTA AATGTGATTT TCTATTTTTG TATAGCCAAA AAATATATAG 540 AATGTAGAGT TTGATGAAGA GAAAGAGGAT GGGTCGATGT TGGGATAGGA TGTGGTGA 1133 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||| AATGTAGAGT TTGATGAAGA GAAAGAGGAT GGGTCGATGT TGGGATAGGA TGTGGTGA 598 hqPGS_C06HBa0024L21.1-5-_SGN-E231883+ (1730 1133) ******************************************************************************** EST sequence 28 +strand 447 n (File: SGN-E240977+) 1 GAGACAATAT CAGTTTCATA TTATGGGTGA AGTGCACGCG CTCTACTAAG TAAAATCTCA 61 GTTTCATATT GATGACATGT CATATAATTA TTTTTTTATT TTTTTTACTT TTCCACATCT 121 TTTAAATAAT TTATTTTTCA CTCTTCACCT ATGCTCTTCA TTTCACTTGG GTCAATTTCT 181 TAAGATTCAA AATTTAATAT TGATTGATTC CTTTTATTTT TTATTATTTT GTAATTATTT 241 ACTATTACTT CCATCAATAC TTATATCAGT CACCATATTT TTTTTCCCAA CTAGATGAAA 301 CTATCAATTC ATATCGATAT GGCGATTATA AATTTATGTA AAATTGATAT GCTAATTTTT 361 TTGATTAGTT GGTGATTTAG CTATTTCATT TCTTAATCCA TATTCAGGTA TAGATTAAGT 421 AACATTATAG CTAAATAAAT AATTATT Predicted gene structure (within gDNA segment 2361 to 525): Exon 1 1731 1288 ( 444 n); cDNA 4 447 ( 444 n); score: 0.991 MATCH C06HBa0024L21.1-5- SGN-E240977+ 0.991 444 0.993 C PGS_C06HBa0024L21.1-5-_SGN-E240977+ (1731 1288) Alignment (genomic DNA sequence = upper lines): ACAATATCAG TTTCATATTA TGGGTGAAGT GCACGCGCTC TACTAAGTAA AATCTCAGTT 1672 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACAATATCAG TTTCATATTA TGGGTGAAGT GCACGCGCTC TACTAAGTAA AATCTCAGTT 63 TCATATTGAT GACATGTCAT ATAATTATTT TTTTATTTTT TTTACTTTTC CACATCTTTT 1612 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCATATTGAT GACATGTCAT ATAATTATTT TTTTATTTTT TTTACTTTTC CACATCTTTT 123 AAATAATTTA TTTTTCACTC TTCACCTATG CTCTTCATTT CACTTGGGTC AATTTCTTAA 1552 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAATAATTTA TTTTTCACTC TTCACCTATG CTCTTCATTT CACTTGGGTC AATTTCTTAA 183 GATTCAAAAT TTAATATTGA TTGATTCCTT TTATTTTTTA TTATTTTGTA ATTATTTACT 1492 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATTCAAAAT TTAATATTGA TTGATTCCTT TTATTTTTTA TTATTTTGTA ATTATTTACT 243 ATTACTTCCA TCAATACTTA TATCAGTCAC CATATTTTTT TTCCCAACTA GATGAAACTA 1432 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTACTTCCA TCAATACTTA TATCAGTCAC CATATTTTTT TTCCCAACTA GATGAAACTA 303 TCAATTCATA TCGATATGGC GATTTTAAAT TTATGTAAAA TTGATATGCT AATTTTTTTG 1372 |||||||||| |||||||||| |||| ||||| |||||||||| |||||||||| |||||||||| TCAATTCATA TCGATATGGC GATTATAAAT TTATGTAAAA TTGATATGCT AATTTTTTTG 363 ATTAGTTGTT GATTTAGTTA TTTCATTTCT TAATCCATAT TCAGGTATAG ATTAAGTAAC 1312 |||||||| | ||||||| || |||||||||| |||||||||| |||||||||| |||||||||| ATTAGTTGGT GATTTAGCTA TTTCATTTCT TAATCCATAT TCAGGTATAG ATTAAGTAAC 423 ATTATAGTTA AATAAATAAT TATT 1288 ||||||| || |||||||||| |||| ATTATAGCTA AATAAATAAT TATT 447 hqPGS_C06HBa0024L21.1-5-_SGN-E240977+ (1731 1288) ******************************************************************************** EST sequence 23 +strand 436 n (File: SGN-E376972+) 1 CAATATCAGT TTCATATTAT GGGTGAAGTG CACGCGCTCT ACTAAGTAAA ATCTCAGTTT 61 CATATTGATG ACATGTCATA TAATTATTTT TTTATTTTTT TTACTTTTCC ACATCTTTTA 121 AATAATTTAT TTTTCACTCT TCACCTATGC TCTTCATTTC ACTTGGGTCA ATTTCTTAAG 181 ATTCAAAATT TAATATTGAT TGATTCCTTT TAATTTTTAT TATTTTGTAA TTATTTACTA 241 TTACTTCCAT CAATACTTAT ATCAGTCACC ATATTTTTTT TCCCAACTAG ATGAAACTAT 301 CAATTCATAT CGATATGGCG ATTTTAAATT TATGTAAAAT TGATATGCTA ATTTTTTTGA 361 TTAGTTGTTG ATTTAGTTAT TTCATTTCTT AATCCATATT CAGGTATAGA TTAAGTAACA 421 TTATAGTTAA ATAAAT Predicted gene structure (within gDNA segment 2330 to 685): Exon 1 1730 1295 ( 436 n); cDNA 1 436 ( 436 n); score: 0.998 MATCH C06HBa0024L21.1-5- SGN-E376972+ 0.998 436 1.000 C PGS_C06HBa0024L21.1-5-_SGN-E376972+ (1730 1295) Alignment (genomic DNA sequence = upper lines): CAATATCAGT TTCATATTAT GGGTGAAGTG CACGCGCTCT ACTAAGTAAA ATCTCAGTTT 1671 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAATATCAGT TTCATATTAT GGGTGAAGTG CACGCGCTCT ACTAAGTAAA ATCTCAGTTT 60 CATATTGATG ACATGTCATA TAATTATTTT TTTATTTTTT TTACTTTTCC ACATCTTTTA 1611 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATATTGATG ACATGTCATA TAATTATTTT TTTATTTTTT TTACTTTTCC ACATCTTTTA 120 AATAATTTAT TTTTCACTCT TCACCTATGC TCTTCATTTC ACTTGGGTCA ATTTCTTAAG 1551 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATAATTTAT TTTTCACTCT TCACCTATGC TCTTCATTTC ACTTGGGTCA ATTTCTTAAG 180 ATTCAAAATT TAATATTGAT TGATTCCTTT TATTTTTTAT TATTTTGTAA TTATTTACTA 1491 |||||||||| |||||||||| |||||||||| || ||||||| |||||||||| |||||||||| ATTCAAAATT TAATATTGAT TGATTCCTTT TAATTTTTAT TATTTTGTAA TTATTTACTA 240 TTACTTCCAT CAATACTTAT ATCAGTCACC ATATTTTTTT TCCCAACTAG ATGAAACTAT 1431 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTACTTCCAT CAATACTTAT ATCAGTCACC ATATTTTTTT TCCCAACTAG ATGAAACTAT 300 CAATTCATAT CGATATGGCG ATTTTAAATT TATGTAAAAT TGATATGCTA ATTTTTTTGA 1371 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAATTCATAT CGATATGGCG ATTTTAAATT TATGTAAAAT TGATATGCTA ATTTTTTTGA 360 TTAGTTGTTG ATTTAGTTAT TTCATTTCTT AATCCATATT CAGGTATAGA TTAAGTAACA 1311 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTAGTTGTTG ATTTAGTTAT TTCATTTCTT AATCCATATT CAGGTATAGA TTAAGTAACA 420 TTATAGTTAA ATAAAT 1295 |||||||||| |||||| TTATAGTTAA ATAAAT 436 hqPGS_C06HBa0024L21.1-5-_SGN-E376972+ (1730 1295) ******************************************************************************** EST sequence 4 +strand 278 n (File: SGN-E550317+) 1 ACAATATCAG TTTCATATTA TGGGTGAAGT GCACGCGCTC TACTAAGTAA AATCTCAGTT 61 TCATATTGAT GACATGTCAT ATAATTATTT TTTTATTTTT TTTACTTTTC CACATCTTTT 121 AAATAATTTA TTTTTCACTC TTCACCTATG CTCTTCATTT CACTTGGGTC AATTTCTTAA 181 GATTCAAAAT TTAATATTGA TTGATTCCTT TTATTTTTTA TTATTTTGTA ATTATTTACT 241 ATTACTTCCA TCAATACTTA TATCAGTCAC CATATTTT Predicted gene structure (within gDNA segment 2331 to 844): Exon 1 1731 1454 ( 278 n); cDNA 1 278 ( 278 n); score: 1.000 MATCH C06HBa0024L21.1-5- SGN-E550317+ 1.000 278 1.000 C PGS_C06HBa0024L21.1-5-_SGN-E550317+ (1731 1454) Alignment (genomic DNA sequence = upper lines): ACAATATCAG TTTCATATTA TGGGTGAAGT GCACGCGCTC TACTAAGTAA AATCTCAGTT 1672 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACAATATCAG TTTCATATTA TGGGTGAAGT GCACGCGCTC TACTAAGTAA AATCTCAGTT 60 TCATATTGAT GACATGTCAT ATAATTATTT TTTTATTTTT TTTACTTTTC CACATCTTTT 1612 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCATATTGAT GACATGTCAT ATAATTATTT TTTTATTTTT TTTACTTTTC CACATCTTTT 120 AAATAATTTA TTTTTCACTC TTCACCTATG CTCTTCATTT CACTTGGGTC AATTTCTTAA 1552 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAATAATTTA TTTTTCACTC TTCACCTATG CTCTTCATTT CACTTGGGTC AATTTCTTAA 180 GATTCAAAAT TTAATATTGA TTGATTCCTT TTATTTTTTA TTATTTTGTA ATTATTTACT 1492 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATTCAAAAT TTAATATTGA TTGATTCCTT TTATTTTTTA TTATTTTGTA ATTATTTACT 240 ATTACTTCCA TCAATACTTA TATCAGTCAC CATATTTT 1454 |||||||||| |||||||||| |||||||||| |||||||| ATTACTTCCA TCAATACTTA TATCAGTCAC CATATTTT 278 hqPGS_C06HBa0024L21.1-5-_SGN-E550317+ (1731 1454) ******************************************************************************** EST sequence 11 +strand 678 n (File: SGN-E264641+) 1 GAAGATGGAG ATTTAAAGCT TTTTGAGTCA AGAGCTATTA CACAATACAT AGCTCACACA 61 TATGCAGACA AAGGGAACCA ACTTTTACCC AATGACCCAA AGAAAATGGC AGTCATGTCT 121 GTATGGATGG AAGTAGAAGC CCAGAAATTC GACCCCATTG GTTCAAAACT AGGGTTTGAG 181 ATTGTCATTA AGCCAATGTT GGGCATGGTG ACTGATGATG CAGTCGTGGC AGAGAACGAA 241 GAGAAACTCG GGAAACTTCT TGATGTGTAT GAATCTAGAC TCAAGGAATC GAAATATTTG 301 GGTGGTGAGA GTTTCACCCT AGCTGATTTG CACCACGCCC CGTCTTTGCA CTACTTGTCG 361 GGGAGTAAAG TGAAGAGCTT GTTCGATGCT AGGCCTCATG TTAGCGCTTG GGTTGCTGAT 421 ATTTTGGCTA GGCCAGCTTG GTCTAAGACA ATTGAGTTGT CAAAACAGTA AGTTTAGTGG 481 CGGATGGGTG AGTATCGCGT TGAAAGGAAG GGGGAACAAT AGTTGGAAAT GGCTGCNTAT 541 ACCTCGTAGA CTGAGGAGCA AAATATGGGC TATGTATTAC TAGTAGGNTA ATAAATATAG 601 GCCACAAGTA ACACTCCTTT TGTAACTTTT TGCTTTGTGG TGTGCTCTTT TTTTTCCTCC 661 TATCCTTCAT CCTTGTCT Predicted gene structure (within gDNA segment 3329 to 1510): Exon 1 3260 3236 ( 25 n); cDNA 1 25 ( 25 n); score: 1.000 Intron 1 3235 2775 ( 461 n); Pd: 0.977 (s: 0), Pa: 0.998 (s: 1.00) Exon 2 2774 2120 ( 655 n); cDNA 26 678 ( 653 n); score: 0.991 MATCH C06HBa0024L21.1-5- SGN-E264641+ 0.991 680 1.003 C PGS_C06HBa0024L21.1-5-_SGN-E264641+ (3260 3236,2774 2120) Alignment (genomic DNA sequence = upper lines): GAAGATGGAG ATTTAAAGCT TTTTGGTATG TTTCCCTTAG GATCATGATT GGCTAGAGAT 3201 |||||||||| |||||||||| ||||| GAAGATGGAG ATTTAAAGCT TTTTG..... .......... .......... .......... 25 TGTTATTTTT TTTTATGTAT AATATATATA TTAATTTGAA CCTCGTAAAA TTAGTGGCTC 3141 .......... .......... .......... .......... .......... .......... 25 CTCTAGTGGC GGACTCAGAA TTTTTGATAA AAGTATGGGT TTATGATTTA TTATATATAC 3081 .......... .......... .......... .......... .......... .......... 25 CTAAAAAATT ATTTTAATCA TGCGTATGTA ATATGATTTC TCAACAAAGG GGGGTTTGGA 3021 .......... .......... .......... .......... .......... .......... 25 TGAATCTGGG ACTCGTTGAC TTAGTGGTTG AGGGTTTGAA AATTCAACTT GACCTTATTT 2961 .......... .......... .......... .......... .......... .......... 25 AGACCTCGAT TCTCGTTAAT CTAAAGATAG AGAGGTTGTT TCTAACAGAG GTTCAGGATA 2901 .......... .......... .......... .......... .......... .......... 25 TAAGTACTAT GGAATCTTGC TTCAATTCAA TGAAAATCAT CACATAATTG ATATTGAATT 2841 .......... .......... .......... .......... .......... .......... 25 TACTTGAAAC ACACTTATTT CTTTGGTTTT ACGATGTTTG ATATATGAAT TATTGGGAAA 2781 .......... .......... .......... .......... .......... .......... 25 CTGCAGAGTC AAGAGCTATT ACACAATACA TAGCTCACAC ATATGCAGAC AAAGGGAACC 2721 |||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ......AGTC AAGAGCTATT ACACAATACA TAGCTCACAC ATATGCAGAC AAAGGGAACC 79 AACTTTTACC CAATGACCCA AAGAAAATGG CAGTCATGTC TGTATGGATG GAAGTAGAAG 2661 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACTTTTACC CAATGACCCA AAGAAAATGG CAGTCATGTC TGTATGGATG GAAGTAGAAG 139 CCCAGAAATT CGACCCCATT GGTTCAAAAC TAGGGTTTGA GATTGTCATT AAGCCAATGT 2601 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCCAGAAATT CGACCCCATT GGTTCAAAAC TAGGGTTTGA GATTGTCATT AAGCCAATGT 199 TGGGCATGGT GACTGATGAT GCAGTCGTGG CAGAGAACGA AGAGAAACTC GGGAAACTTC 2541 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGGCATGGT GACTGATGAT GCAGTCGTGG CAGAGAACGA AGAGAAACTC GGGAAACTTC 259 TTGATGTGTA TGAATCTAGA CTCAAGGAAT CGAAATATTT GGGTGGTGAG AGTTTCACCC 2481 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGATGTGTA TGAATCTAGA CTCAAGGAAT CGAAATATTT GGGTGGTGAG AGTTTCACCC 319 TAGCTGATTT GCACCACGCC CCGTCTTTGC ACTACTTGTC GGGGAGTAAA GTGAAGAGCT 2421 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAGCTGATTT GCACCACGCC CCGTCTTTGC ACTACTTGTC GGGGAGTAAA GTGAAGAGCT 379 TGTTCGATGC TAGGCCTCAT GTTAGCGCTT GGGTTGCTGA TATTTTGGCT AGGCCAGCTT 2361 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTTCGATGC TAGGCCTCAT GTTAGCGCTT GGGTTGCTGA TATTTTGGCT AGGCCAGCTT 439 GGTCTAAGAC AATTGAGTTG TCAAAACAGT AAGTTTAGTG GCGGATGGGT GAGTATCGCG 2301 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGTCTAAGAC AATTGAGTTG TCAAAACAGT AAGTTTAGTG GCGGATGGGT GAGTATCGCG 499 TTGAAAGGAA GGGGGAACAA TAGTTGGAAA TGGCTGCTAA TACCTCGTAG ACTGAGGAGC 2241 |||||||||| |||||||||| |||||||||| ||||||| | |||||||||| |||||||||| TTGAAAGGAA GGGGGAACAA TAGTTGGAAA TGGCTGCNTA TACCTCGTAG ACTGAGGAGC 559 AAAATATGGC CTATGTATTA CTAGTAGGTT AATAAATATA GGCCACAAGT AACACTCCTT 2181 ||||||||| |||||||||| |||||||| | |||||||||| |||||||||| |||||||||| AAAATATGGG CTATGTATTA CTAGTAGGNT AATAAATATA GGCCACAAGT AACACTCCTT 619 TTGTAACCTT TTTGCTTTGT GGTGTGCTCT TTTTTTTCCT TCCTATCCTT CATCCTTGTC 2121 |||||| ||| |||||||||| |||||||||| ||||||||| |||||||||| |||||||||| TTGTAA-CTT TTTGCTTTGT GGTGTGCTCT TTTTTTTCC- TCCTATCCTT CATCCTTGTC 677 T 2120 | T 678 hqPGS_C06HBa0024L21.1-5-_SGN-E264641+ (3260 3236,2774 2120) ******************************************************************************** EST sequence 24 +strand 570 n (File: SGN-E259186+) 1 GTTTGGTCAA GTTCCAGCTT TTGAAGATGG AGATTTAAAG CTTTTTGAGT CAAGAGCTAT 61 TACACAATAC ATAGCTCACA CATATGCAGA CAAAGGGAAC CCAACTTTTA CCCAATGACC 121 CAAAGAAAAT GGCAGTCATG TCTGTATGGA TGGAAGTAGA AGCCCAGAAA TTCGACCCCA 181 TTGGTTCAAA ACTAGGGTTT GAGATTGTCA TTAAGCCAAT GTTGGGCATG GTGACTGATG 241 ATGCAGTCGT GGCAGAGAAC GAAGAGAAAC TCGGGAAACT TCTTGATGTG TATGAATCTA 301 GACTCAAGGA ATCGAAATAT TTGGGTGGTG AGAGTTTCAC CCTAGCTGAT TTGCACCACG 361 CCCCGTCTTT GCACTACTTG TCGGGGAGTA AAGTGAAGAG CTTGTTCGAT GCTAGGCCTC 421 ATGTTAGCGC TTGGGTTGCT GATATTTTGG CTAGGCCAGC TTGGTCTAAG ACAATTGAGT 481 TGTCAAAACA GTAAGTTTAG TGGCGGATGG GTGAGTATCG CGTTGAAAGG AAGGGGGAAC 541 AATAGTTGGA AATGGCTGCT AATACCTCGT Predicted gene structure (within gDNA segment 3329 to 1643): Exon 1 3282 3236 ( 47 n); cDNA 1 47 ( 47 n); score: 1.000 Intron 1 3235 2775 ( 461 n); Pd: 0.977 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 2 2774 2253 ( 522 n); cDNA 48 570 ( 523 n); score: 0.995 MATCH C06HBa0024L21.1-5- SGN-E259186+ 0.995 569 0.998 C PGS_C06HBa0024L21.1-5-_SGN-E259186+ (3282 3236,2774 2253) Alignment (genomic DNA sequence = upper lines): GTTTGGTCAA GTTCCAGCTT TTGAAGATGG AGATTTAAAG CTTTTTGGTA TGTTTCCCTT 3223 |||||||||| |||||||||| |||||||||| |||||||||| ||||||| GTTTGGTCAA GTTCCAGCTT TTGAAGATGG AGATTTAAAG CTTTTTG... .......... 47 AGGATCATGA TTGGCTAGAG ATTGTTATTT TTTTTTATGT ATAATATATA TATTAATTTG 3163 .......... .......... .......... .......... .......... .......... 47 AACCTCGTAA AATTAGTGGC TCCTCTAGTG GCGGACTCAG AATTTTTGAT AAAAGTATGG 3103 .......... .......... .......... .......... .......... .......... 47 GTTTATGATT TATTATATAT ACCTAAAAAA TTATTTTAAT CATGCGTATG TAATATGATT 3043 .......... .......... .......... .......... .......... .......... 47 TCTCAACAAA GGGGGGTTTG GATGAATCTG GGACTCGTTG ACTTAGTGGT TGAGGGTTTG 2983 .......... .......... .......... .......... .......... .......... 47 AAAATTCAAC TTGACCTTAT TTAGACCTCG ATTCTCGTTA ATCTAAAGAT AGAGAGGTTG 2923 .......... .......... .......... .......... .......... .......... 47 TTTCTAACAG AGGTTCAGGA TATAAGTACT ATGGAATCTT GCTTCAATTC AATGAAAATC 2863 .......... .......... .......... .......... .......... .......... 47 ATCACATAAT TGATATTGAA TTTACTTGAA ACACACTTAT TTCTTTGGTT TTACGATGTT 2803 .......... .......... .......... .......... .......... .......... 47 TGATATATGA ATTATTGGGA AACTGCAGAG TCAAGAGCTA TTACACAATA CATAGCTCAC 2743 || |||||||||| |||||||||| |||||||||| .......... .......... ........AG TCAAGAGCTA TTACACAATA CATAGCTCAC 79 ACATATGCAG ACAAAGGGAA -CCAACTTTT ACCCAATGAC CCAAAGAAAA TGGCAGTCAT 2684 |||||||||| |||||||||| ||||||||| |||||||||| |||||||||| |||||||||| ACATATGCAG ACAAAGGGAA CCCAACTTTT ACCCAATGAC CCAAAGAAAA TGGCAGTCAT 139 GTCTGTATGG ATGGAAGTAG AAGCCCAGAA ATTCGACCCC ATTGGTTCAA AACTAGGGTT 2624 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTCTGTATGG ATGGAAGTAG AAGCCCAGAA ATTCGACCCC ATTGGTTCAA AACTAGGGTT 199 TGAGATTGTC ATTAAGCCAA TGTTGGGCAT GGTGACTGAT GATGCAGTCG TGGCAGAGAA 2564 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAGATTGTC ATTAAGCCAA TGTTGGGCAT GGTGACTGAT GATGCAGTCG TGGCAGAGAA 259 CGAAGAGAAA CTCGGGAAAC TTCTTGATGT GTATGAATCT AGACTCAAGG AATCGAAATA 2504 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGAAGAGAAA CTCGGGAAAC TTCTTGATGT GTATGAATCT AGACTCAAGG AATCGAAATA 319 TTTGGGTGGT GAGAGTTTCA CCCTAGCTGA TTTGCACCAC GCCCCGTCTT TGCACTACTT 2444 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTGGGTGGT GAGAGTTTCA CCCTAGCTGA TTTGCACCAC GCCCCGTCTT TGCACTACTT 379 GTCGGGGAGT AAAGTGAAGA GCTTGTTCGA TGCTAGGCCT CATGTTAGCG CTTGGGTTGC 2384 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTCGGGGAGT AAAGTGAAGA GCTTGTTCGA TGCTAGGCCT CATGTTAGCG CTTGGGTTGC 439 TGATATTTTG GCTAGGCCAG CTTGGTCTAA GACAATTGAG TTGTCAAAAC AGTAAGTTTA 2324 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGATATTTTG GCTAGGCCAG CTTGGTCTAA GACAATTGAG TTGTCAAAAC AGTAAGTTTA 499 GTGGCGGATG GGTGAGTATC GCGTTGAAAG GAAGGGGGAA CAATAGTTGG AAATGGCTGC 2264 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGGCGGATG GGTGAGTATC GCGTTGAAAG GAAGGGGGAA CAATAGTTGG AAATGGCTGC 559 TAATACCTCG T 2253 |||||||||| | TAATACCTCG T 570 hqPGS_C06HBa0024L21.1-5-_SGN-E259186+ (3282 3236,2774 2253) ******************************************************************************** EST sequence 21 +strand 541 n (File: SGN-E256779+) 1 AGCTTTTGAA GATGGAGATT TAAAGCTTTT TGAGTCAAGA GCTATGGGAC AATACATAGC 61 TCACACATAT GCAGACAAAG GGAACCAACT TTTACCCAAT GACCCAAAGA AAATGGCAGT 121 CATGTCTGTA TGGATGGAAG TAGAAGCCCA GAAATTCGAC CCCATTGGTT CAAAACTAGG 181 GTTTGAGATT GTCATTAAGC CAATGTTGGG CATGGTGACT GATGATGCAG TCGTGGCAGA 241 GAACGAAGAG AAACTCGGGA AACTTCTTGA TGTGTATGAA TCTAGACTCA AGGAATCGAA 301 ATATTTGGGT GGTGAGAGTT TCACCCTAGC TGATTTGCAC CACGCCCCGT CTTTGCACTA 361 CTTGTCGGGG AGTAAAGTGA AGAGCTTGTT CGATGCTAGG CCTCATGTTA GCGCTTGGGT 421 TGCTGATATT TTGGCTAGGC CAGCTTGGTC TAAGACAATT GAGTTGTCAA AACAGTAAGT 481 TTAGTGGCGG ATGGGTGAGT ATCGCGTTGA AAGGAAGGGG GAACAATATT TGGAAATGGC 541 T Predicted gene structure (within gDNA segment 3329 to 1539): Exon 1 3267 3236 ( 32 n); cDNA 1 32 ( 32 n); score: 1.000 Intron 1 3235 2775 ( 461 n); Pd: 0.977 (s: 0), Pa: 0.998 (s: 0.94) Exon 2 2774 2266 ( 509 n); cDNA 33 541 ( 509 n); score: 0.992 MATCH C06HBa0024L21.1-5- SGN-E256779+ 0.992 541 1.000 C PGS_C06HBa0024L21.1-5-_SGN-E256779+ (3267 3236,2774 2266) Alignment (genomic DNA sequence = upper lines): AGCTTTTGAA GATGGAGATT TAAAGCTTTT TGGTATGTTT CCCTTAGGAT CATGATTGGC 3208 |||||||||| |||||||||| |||||||||| || AGCTTTTGAA GATGGAGATT TAAAGCTTTT TG........ .......... .......... 32 TAGAGATTGT TATTTTTTTT TATGTATAAT ATATATATTA ATTTGAACCT CGTAAAATTA 3148 .......... .......... .......... .......... .......... .......... 32 GTGGCTCCTC TAGTGGCGGA CTCAGAATTT TTGATAAAAG TATGGGTTTA TGATTTATTA 3088 .......... .......... .......... .......... .......... .......... 32 TATATACCTA AAAAATTATT TTAATCATGC GTATGTAATA TGATTTCTCA ACAAAGGGGG 3028 .......... .......... .......... .......... .......... .......... 32 GTTTGGATGA ATCTGGGACT CGTTGACTTA GTGGTTGAGG GTTTGAAAAT TCAACTTGAC 2968 .......... .......... .......... .......... .......... .......... 32 CTTATTTAGA CCTCGATTCT CGTTAATCTA AAGATAGAGA GGTTGTTTCT AACAGAGGTT 2908 .......... .......... .......... .......... .......... .......... 32 CAGGATATAA GTACTATGGA ATCTTGCTTC AATTCAATGA AAATCATCAC ATAATTGATA 2848 .......... .......... .......... .......... .......... .......... 32 TTGAATTTAC TTGAAACACA CTTATTTCTT TGGTTTTACG ATGTTTGATA TATGAATTAT 2788 .......... .......... .......... .......... .......... .......... 32 TGGGAAACTG CAGAGTCAAG AGCTATTACA CAATACATAG CTCACACATA TGCAGACAAA 2728 ||||||| |||||| | |||||||||| |||||||||| |||||||||| .......... ...AGTCAAG AGCTATGGGA CAATACATAG CTCACACATA TGCAGACAAA 79 GGGAACCAAC TTTTACCCAA TGACCCAAAG AAAATGGCAG TCATGTCTGT ATGGATGGAA 2668 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGGAACCAAC TTTTACCCAA TGACCCAAAG AAAATGGCAG TCATGTCTGT ATGGATGGAA 139 GTAGAAGCCC AGAAATTCGA CCCCATTGGT TCAAAACTAG GGTTTGAGAT TGTCATTAAG 2608 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTAGAAGCCC AGAAATTCGA CCCCATTGGT TCAAAACTAG GGTTTGAGAT TGTCATTAAG 199 CCAATGTTGG GCATGGTGAC TGATGATGCA GTCGTGGCAG AGAACGAAGA GAAACTCGGG 2548 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCAATGTTGG GCATGGTGAC TGATGATGCA GTCGTGGCAG AGAACGAAGA GAAACTCGGG 259 AAACTTCTTG ATGTGTATGA ATCTAGACTC AAGGAATCGA AATATTTGGG TGGTGAGAGT 2488 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAACTTCTTG ATGTGTATGA ATCTAGACTC AAGGAATCGA AATATTTGGG TGGTGAGAGT 319 TTCACCCTAG CTGATTTGCA CCACGCCCCG TCTTTGCACT ACTTGTCGGG GAGTAAAGTG 2428 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCACCCTAG CTGATTTGCA CCACGCCCCG TCTTTGCACT ACTTGTCGGG GAGTAAAGTG 379 AAGAGCTTGT TCGATGCTAG GCCTCATGTT AGCGCTTGGG TTGCTGATAT TTTGGCTAGG 2368 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGAGCTTGT TCGATGCTAG GCCTCATGTT AGCGCTTGGG TTGCTGATAT TTTGGCTAGG 439 CCAGCTTGGT CTAAGACAAT TGAGTTGTCA AAACAGTAAG TTTAGTGGCG GATGGGTGAG 2308 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCAGCTTGGT CTAAGACAAT TGAGTTGTCA AAACAGTAAG TTTAGTGGCG GATGGGTGAG 499 TATCGCGTTG AAAGGAAGGG GGAACAATAG TTGGAAATGG CT 2266 |||||||||| |||||||||| ||||||||| |||||||||| || TATCGCGTTG AAAGGAAGGG GGAACAATAT TTGGAAATGG CT 541 hqPGS_C06HBa0024L21.1-5-_SGN-E256779+ (3267 3236,2774 2266) ******************************************************************************** EST sequence 20 +strand 582 n (File: SGN-E256887+) 1 AAAAAGGAAC CATTCATTTC TCTAAATCCG TTTGGTCAAG TTCCAGCTTT TGAAGATGGA 61 GATTTAAAGC TTTTTGAGTC AAGAGCTATT ACACAATACA TAGCTCACAC ATATGCAGAC 121 AAAGGGAACC AACTTTTACC CAATGACCCA AAGAAAATGG CAGTCATGTC TGTATGGATG 181 GAAGTAGAAG CCCAGAAATT CGACCCCATT GGTTCAAAAC TAGGGTTTGA GATTGTCATT 241 AAGCCAATGT TGGGCATGGT GACTGATGAT GCAGTCGTGG CAGAGAACGA AGAGAAACTC 301 GGGAAACTTC TTGATGTGTA TGAATCTAGA CTCAAGGAAT CGAAATATTT GGGTGGTGAG 361 AGTTTCACCC TAGCTGATTT GCACCACGCC CCGTCTTTGC ACTACTTGTC GGGGAGTAAA 421 GTGAAGAGCT TGTTCGATGC TAGGCCTCAT GTTAGCGCTT GGGTTGCTGA TATTTTGGCT 481 AGGCCAGCTT GGTCTAAGAC AATTGAGTTG TCAAAACAGT AAGTTTAGTG GCGGATGGGT 541 GAGTATCGCG TTGAAAAGGA AGGGGAACAA TAGTTTGGAA AT Predicted gene structure (within gDNA segment 3329 to 1425): Exon 1 3284 3236 ( 49 n); cDNA 28 76 ( 49 n); score: 1.000 Intron 1 3235 2775 ( 461 n); Pd: 0.977 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 2 2774 2270 ( 505 n); cDNA 77 582 ( 506 n); score: 0.989 MATCH C06HBa0024L21.1-5- SGN-E256887+ 0.989 554 0.952 C PGS_C06HBa0024L21.1-5-_SGN-E256887+ (3284 3236,2774 2270) Alignment (genomic DNA sequence = upper lines): CCGTTTGGTC AAGTTCCAGC TTTTGAAGAT GGAGATTTAA AGCTTTTTGG TATGTTTCCC 3225 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| CCGTTTGGTC AAGTTCCAGC TTTTGAAGAT GGAGATTTAA AGCTTTTTG. .......... 76 TTAGGATCAT GATTGGCTAG AGATTGTTAT TTTTTTTTAT GTATAATATA TATATTAATT 3165 .......... .......... .......... .......... .......... .......... 76 TGAACCTCGT AAAATTAGTG GCTCCTCTAG TGGCGGACTC AGAATTTTTG ATAAAAGTAT 3105 .......... .......... .......... .......... .......... .......... 76 GGGTTTATGA TTTATTATAT ATACCTAAAA AATTATTTTA ATCATGCGTA TGTAATATGA 3045 .......... .......... .......... .......... .......... .......... 76 TTTCTCAACA AAGGGGGGTT TGGATGAATC TGGGACTCGT TGACTTAGTG GTTGAGGGTT 2985 .......... .......... .......... .......... .......... .......... 76 TGAAAATTCA ACTTGACCTT ATTTAGACCT CGATTCTCGT TAATCTAAAG ATAGAGAGGT 2925 .......... .......... .......... .......... .......... .......... 76 TGTTTCTAAC AGAGGTTCAG GATATAAGTA CTATGGAATC TTGCTTCAAT TCAATGAAAA 2865 .......... .......... .......... .......... .......... .......... 76 TCATCACATA ATTGATATTG AATTTACTTG AAACACACTT ATTTCTTTGG TTTTACGATG 2805 .......... .......... .......... .......... .......... .......... 76 TTTGATATAT GAATTATTGG GAAACTGCAG AGTCAAGAGC TATTACACAA TACATAGCTC 2745 |||||||||| |||||||||| |||||||||| .......... .......... .......... AGTCAAGAGC TATTACACAA TACATAGCTC 106 ACACATATGC AGACAAAGGG AACCAACTTT TACCCAATGA CCCAAAGAAA ATGGCAGTCA 2685 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACACATATGC AGACAAAGGG AACCAACTTT TACCCAATGA CCCAAAGAAA ATGGCAGTCA 166 TGTCTGTATG GATGGAAGTA GAAGCCCAGA AATTCGACCC CATTGGTTCA AAACTAGGGT 2625 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTCTGTATG GATGGAAGTA GAAGCCCAGA AATTCGACCC CATTGGTTCA AAACTAGGGT 226 TTGAGATTGT CATTAAGCCA ATGTTGGGCA TGGTGACTGA TGATGCAGTC GTGGCAGAGA 2565 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGAGATTGT CATTAAGCCA ATGTTGGGCA TGGTGACTGA TGATGCAGTC GTGGCAGAGA 286 ACGAAGAGAA ACTCGGGAAA CTTCTTGATG TGTATGAATC TAGACTCAAG GAATCGAAAT 2505 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACGAAGAGAA ACTCGGGAAA CTTCTTGATG TGTATGAATC TAGACTCAAG GAATCGAAAT 346 ATTTGGGTGG TGAGAGTTTC ACCCTAGCTG ATTTGCACCA CGCCCCGTCT TTGCACTACT 2445 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTTGGGTGG TGAGAGTTTC ACCCTAGCTG ATTTGCACCA CGCCCCGTCT TTGCACTACT 406 TGTCGGGGAG TAAAGTGAAG AGCTTGTTCG ATGCTAGGCC TCATGTTAGC GCTTGGGTTG 2385 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTCGGGGAG TAAAGTGAAG AGCTTGTTCG ATGCTAGGCC TCATGTTAGC GCTTGGGTTG 466 CTGATATTTT GGCTAGGCCA GCTTGGTCTA AGACAATTGA GTTGTCAAAA CAGTAAGTTT 2325 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGATATTTT GGCTAGGCCA GCTTGGTCTA AGACAATTGA GTTGTCAAAA CAGTAAGTTT 526 AGTGGCGGAT GGGTGAGTAT CGCGTTGAAA GGAAGGGGGA ACAATAG-TT GGAAAT 2270 |||||||||| |||||||||| |||||||||| | | ||||| ||||||| || |||||| AGTGGCGGAT GGGTGAGTAT CGCGTTGAAA AGGAAGGGGA ACAATAGTTT GGAAAT 582 hqPGS_C06HBa0024L21.1-5-_SGN-E256887+ (3284 3236,2774 2270) ******************************************************************************** EST sequence 22 +strand 559 n (File: SGN-E259458+) 1 CTAAATCCGT TTGGTCAAGT TCCAGCTTTT GAAGATGGAG ATTTAAAGCT TTTTGAGTCA 61 AGAGCTATTA CACAATACAT AGCTCACACA TATGCAGACA AAGGGAACCA ACTTTTACCC 121 AATGACCCAA AGAAAATGGC AGTCATGTCT GTATGGATGG AAGTAGAAGC CCAGAAATTC 181 GACCCCATTG GTTCAAAACT AGGGTTTGAG ATTGTCATTA AGCCAATGTT GGGCATGGTG 241 ACTGATGATG CAGTCGTGGC AGAGAACGAA GAGAAACTCG GGAAACTTCT TGATGTGTAT 301 GAATCTAGAC TCAAGGAATC GAAATATTTG GGTGGTGAGA GTTTCACCCT AGCTGATTTG 361 CACCACGCCC CGTCTTTGCA CTACTTGTCG GGGAGTAAAG TGAAGAGCTT GTTCGATGCT 421 AGGCCTCATG TTAGCGCTTG GGTTGCTGAT ATTTTGGCTA GGCCAGCTTG GTCTAAGACA 481 ATTGAGTTGT CAAAACAGTA AGTTTAGTGG CGGATGGGTG AGTATCGCGT TGAAAGGAAG 541 GGGGAACAAT AGTTGGAAA Predicted gene structure (within gDNA segment 3329 to 1661): Exon 1 3284 3236 ( 49 n); cDNA 7 55 ( 49 n); score: 1.000 Intron 1 3235 2775 ( 461 n); Pd: 0.977 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 2 2774 2271 ( 504 n); cDNA 56 559 ( 504 n); score: 1.000 MATCH C06HBa0024L21.1-5- SGN-E259458+ 1.000 553 0.989 C PGS_C06HBa0024L21.1-5-_SGN-E259458+ (3284 3236,2774 2271) Alignment (genomic DNA sequence = upper lines): CCGTTTGGTC AAGTTCCAGC TTTTGAAGAT GGAGATTTAA AGCTTTTTGG TATGTTTCCC 3225 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| CCGTTTGGTC AAGTTCCAGC TTTTGAAGAT GGAGATTTAA AGCTTTTTG. .......... 55 TTAGGATCAT GATTGGCTAG AGATTGTTAT TTTTTTTTAT GTATAATATA TATATTAATT 3165 .......... .......... .......... .......... .......... .......... 55 TGAACCTCGT AAAATTAGTG GCTCCTCTAG TGGCGGACTC AGAATTTTTG ATAAAAGTAT 3105 .......... .......... .......... .......... .......... .......... 55 GGGTTTATGA TTTATTATAT ATACCTAAAA AATTATTTTA ATCATGCGTA TGTAATATGA 3045 .......... .......... .......... .......... .......... .......... 55 TTTCTCAACA AAGGGGGGTT TGGATGAATC TGGGACTCGT TGACTTAGTG GTTGAGGGTT 2985 .......... .......... .......... .......... .......... .......... 55 TGAAAATTCA ACTTGACCTT ATTTAGACCT CGATTCTCGT TAATCTAAAG ATAGAGAGGT 2925 .......... .......... .......... .......... .......... .......... 55 TGTTTCTAAC AGAGGTTCAG GATATAAGTA CTATGGAATC TTGCTTCAAT TCAATGAAAA 2865 .......... .......... .......... .......... .......... .......... 55 TCATCACATA ATTGATATTG AATTTACTTG AAACACACTT ATTTCTTTGG TTTTACGATG 2805 .......... .......... .......... .......... .......... .......... 55 TTTGATATAT GAATTATTGG GAAACTGCAG AGTCAAGAGC TATTACACAA TACATAGCTC 2745 |||||||||| |||||||||| |||||||||| .......... .......... .......... AGTCAAGAGC TATTACACAA TACATAGCTC 85 ACACATATGC AGACAAAGGG AACCAACTTT TACCCAATGA CCCAAAGAAA ATGGCAGTCA 2685 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACACATATGC AGACAAAGGG AACCAACTTT TACCCAATGA CCCAAAGAAA ATGGCAGTCA 145 TGTCTGTATG GATGGAAGTA GAAGCCCAGA AATTCGACCC CATTGGTTCA AAACTAGGGT 2625 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTCTGTATG GATGGAAGTA GAAGCCCAGA AATTCGACCC CATTGGTTCA AAACTAGGGT 205 TTGAGATTGT CATTAAGCCA ATGTTGGGCA TGGTGACTGA TGATGCAGTC GTGGCAGAGA 2565 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGAGATTGT CATTAAGCCA ATGTTGGGCA TGGTGACTGA TGATGCAGTC GTGGCAGAGA 265 ACGAAGAGAA ACTCGGGAAA CTTCTTGATG TGTATGAATC TAGACTCAAG GAATCGAAAT 2505 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACGAAGAGAA ACTCGGGAAA CTTCTTGATG TGTATGAATC TAGACTCAAG GAATCGAAAT 325 ATTTGGGTGG TGAGAGTTTC ACCCTAGCTG ATTTGCACCA CGCCCCGTCT TTGCACTACT 2445 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTTGGGTGG TGAGAGTTTC ACCCTAGCTG ATTTGCACCA CGCCCCGTCT TTGCACTACT 385 TGTCGGGGAG TAAAGTGAAG AGCTTGTTCG ATGCTAGGCC TCATGTTAGC GCTTGGGTTG 2385 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTCGGGGAG TAAAGTGAAG AGCTTGTTCG ATGCTAGGCC TCATGTTAGC GCTTGGGTTG 445 CTGATATTTT GGCTAGGCCA GCTTGGTCTA AGACAATTGA GTTGTCAAAA CAGTAAGTTT 2325 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGATATTTT GGCTAGGCCA GCTTGGTCTA AGACAATTGA GTTGTCAAAA CAGTAAGTTT 505 AGTGGCGGAT GGGTGAGTAT CGCGTTGAAA GGAAGGGGGA ACAATAGTTG GAAA 2271 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||| AGTGGCGGAT GGGTGAGTAT CGCGTTGAAA GGAAGGGGGA ACAATAGTTG GAAA 559 hqPGS_C06HBa0024L21.1-5-_SGN-E259458+ (3284 3236,2774 2271) ******************************************************************************** EST sequence 10 +strand 434 n (File: SGN-E232940+) 1 GAAGATGGAG ATTTAAAGCT TTTTGAGTCA AGAGCTATTA CACAATACAT AGCTCACACA 61 TATGCAGACA AAGGGAACCA ACTTTTACCC AATGACCCAA AGAAAATGGC AGTCATGTCT 121 GTATGGATGG AAGTAGAAGC CCAGAAATTC GACCCCATTG GTTCAAAACT AGGGTTTGAG 181 ATTGTCATTA AGCCAATGTT GGGCATGGTG ACTGATGATG CAGTCGTGGC AGAGAACGAA 241 GAGAAACTCG GGAAACTTCT TGATGTGTAT GAATCTAGAC TCAAGGAATC GAAATATTTG 301 GGTGGTGAGA GTTTCACCCT AGCTGATTTG CACCACGCCC CGTCTTTGCA CTACTTGTCG 361 GGGAGTAAAG TGAAGAGCTT GTTCGATGCT AGGCCTCATG TTAGCGCTTG GGTTGCTGAT 421 ATTTTGGCTA GGCC Predicted gene structure (within gDNA segment 3329 to 1756): Exon 1 3260 3236 ( 25 n); cDNA 1 25 ( 25 n); score: 1.000 Intron 1 3235 2775 ( 461 n); Pd: 0.977 (s: 0), Pa: 0.998 (s: 1.00) Exon 2 2774 2366 ( 409 n); cDNA 26 434 ( 409 n); score: 1.000 MATCH C06HBa0024L21.1-5- SGN-E232940+ 1.000 434 1.000 C PGS_C06HBa0024L21.1-5-_SGN-E232940+ (3260 3236,2774 2366) Alignment (genomic DNA sequence = upper lines): GAAGATGGAG ATTTAAAGCT TTTTGGTATG TTTCCCTTAG GATCATGATT GGCTAGAGAT 3201 |||||||||| |||||||||| ||||| GAAGATGGAG ATTTAAAGCT TTTTG..... .......... .......... .......... 25 TGTTATTTTT TTTTATGTAT AATATATATA TTAATTTGAA CCTCGTAAAA TTAGTGGCTC 3141 .......... .......... .......... .......... .......... .......... 25 CTCTAGTGGC GGACTCAGAA TTTTTGATAA AAGTATGGGT TTATGATTTA TTATATATAC 3081 .......... .......... .......... .......... .......... .......... 25 CTAAAAAATT ATTTTAATCA TGCGTATGTA ATATGATTTC TCAACAAAGG GGGGTTTGGA 3021 .......... .......... .......... .......... .......... .......... 25 TGAATCTGGG ACTCGTTGAC TTAGTGGTTG AGGGTTTGAA AATTCAACTT GACCTTATTT 2961 .......... .......... .......... .......... .......... .......... 25 AGACCTCGAT TCTCGTTAAT CTAAAGATAG AGAGGTTGTT TCTAACAGAG GTTCAGGATA 2901 .......... .......... .......... .......... .......... .......... 25 TAAGTACTAT GGAATCTTGC TTCAATTCAA TGAAAATCAT CACATAATTG ATATTGAATT 2841 .......... .......... .......... .......... .......... .......... 25 TACTTGAAAC ACACTTATTT CTTTGGTTTT ACGATGTTTG ATATATGAAT TATTGGGAAA 2781 .......... .......... .......... .......... .......... .......... 25 CTGCAGAGTC AAGAGCTATT ACACAATACA TAGCTCACAC ATATGCAGAC AAAGGGAACC 2721 |||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ......AGTC AAGAGCTATT ACACAATACA TAGCTCACAC ATATGCAGAC AAAGGGAACC 79 AACTTTTACC CAATGACCCA AAGAAAATGG CAGTCATGTC TGTATGGATG GAAGTAGAAG 2661 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACTTTTACC CAATGACCCA AAGAAAATGG CAGTCATGTC TGTATGGATG GAAGTAGAAG 139 CCCAGAAATT CGACCCCATT GGTTCAAAAC TAGGGTTTGA GATTGTCATT AAGCCAATGT 2601 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCCAGAAATT CGACCCCATT GGTTCAAAAC TAGGGTTTGA GATTGTCATT AAGCCAATGT 199 TGGGCATGGT GACTGATGAT GCAGTCGTGG CAGAGAACGA AGAGAAACTC GGGAAACTTC 2541 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGGCATGGT GACTGATGAT GCAGTCGTGG CAGAGAACGA AGAGAAACTC GGGAAACTTC 259 TTGATGTGTA TGAATCTAGA CTCAAGGAAT CGAAATATTT GGGTGGTGAG AGTTTCACCC 2481 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGATGTGTA TGAATCTAGA CTCAAGGAAT CGAAATATTT GGGTGGTGAG AGTTTCACCC 319 TAGCTGATTT GCACCACGCC CCGTCTTTGC ACTACTTGTC GGGGAGTAAA GTGAAGAGCT 2421 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAGCTGATTT GCACCACGCC CCGTCTTTGC ACTACTTGTC GGGGAGTAAA GTGAAGAGCT 379 TGTTCGATGC TAGGCCTCAT GTTAGCGCTT GGGTTGCTGA TATTTTGGCT AGGCC 2366 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||| TGTTCGATGC TAGGCCTCAT GTTAGCGCTT GGGTTGCTGA TATTTTGGCT AGGCC 434 hqPGS_C06HBa0024L21.1-5-_SGN-E232940+ (3260 3236,2774 2366) ******************************************************************************** EST sequence 33 +strand 430 n (File: SGN-E301792+) 1 GCTTTTGAAG ATGGAGATTT AAAGCTTTTT GAGTCAAGAG CTATTACACA ATACATAGCT 61 CACACATATG CAGACAAAGG GAACCAACTT TTACCCAATG ACCCAAAGAA AATGGCAGTC 121 ATGTCTGTAT GGATGGAAGT AGAAGCCCAG AAATTCGACC CCATTGGTTC AAAACTAGGG 181 TTTGAGATTG TCATTAAGCC AATGTTGGGC ATGGTGACTG ATGATGCAGT CGTGGCAGAG 241 AACGAAGAGA AACTCGGGAA ACTTCTTGAT GTGTATGAAT CTAGACTCAA GGAATCGAAA 301 TATTTGGGTG GTGAGAGTTT CACCCTAGCT GATTTGCACC ACGCCCCGTC TTTGCACTAC 361 TTGTCGGGGA GTAAAGTGAA GAGCTTGTTC GATGCTAGGC CTCATGTTAG CGCTTGGGTT 421 GCTGATATTT Predicted gene structure (within gDNA segment 3329 to 1766): Exon 1 3266 3236 ( 31 n); cDNA 1 31 ( 31 n); score: 1.000 Intron 1 3235 2775 ( 461 n); Pd: 0.977 (s: 0), Pa: 0.998 (s: 1.00) Exon 2 2774 2376 ( 399 n); cDNA 32 430 ( 399 n); score: 1.000 MATCH C06HBa0024L21.1-5- SGN-E301792+ 1.000 430 1.000 C PGS_C06HBa0024L21.1-5-_SGN-E301792+ (3266 3236,2774 2376) Alignment (genomic DNA sequence = upper lines): GCTTTTGAAG ATGGAGATTT AAAGCTTTTT GGTATGTTTC CCTTAGGATC ATGATTGGCT 3207 |||||||||| |||||||||| |||||||||| | GCTTTTGAAG ATGGAGATTT AAAGCTTTTT G......... .......... .......... 31 AGAGATTGTT ATTTTTTTTT ATGTATAATA TATATATTAA TTTGAACCTC GTAAAATTAG 3147 .......... .......... .......... .......... .......... .......... 31 TGGCTCCTCT AGTGGCGGAC TCAGAATTTT TGATAAAAGT ATGGGTTTAT GATTTATTAT 3087 .......... .......... .......... .......... .......... .......... 31 ATATACCTAA AAAATTATTT TAATCATGCG TATGTAATAT GATTTCTCAA CAAAGGGGGG 3027 .......... .......... .......... .......... .......... .......... 31 TTTGGATGAA TCTGGGACTC GTTGACTTAG TGGTTGAGGG TTTGAAAATT CAACTTGACC 2967 .......... .......... .......... .......... .......... .......... 31 TTATTTAGAC CTCGATTCTC GTTAATCTAA AGATAGAGAG GTTGTTTCTA ACAGAGGTTC 2907 .......... .......... .......... .......... .......... .......... 31 AGGATATAAG TACTATGGAA TCTTGCTTCA ATTCAATGAA AATCATCACA TAATTGATAT 2847 .......... .......... .......... .......... .......... .......... 31 TGAATTTACT TGAAACACAC TTATTTCTTT GGTTTTACGA TGTTTGATAT ATGAATTATT 2787 .......... .......... .......... .......... .......... .......... 31 GGGAAACTGC AGAGTCAAGA GCTATTACAC AATACATAGC TCACACATAT GCAGACAAAG 2727 |||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ..AGTCAAGA GCTATTACAC AATACATAGC TCACACATAT GCAGACAAAG 79 GGAACCAACT TTTACCCAAT GACCCAAAGA AAATGGCAGT CATGTCTGTA TGGATGGAAG 2667 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGAACCAACT TTTACCCAAT GACCCAAAGA AAATGGCAGT CATGTCTGTA TGGATGGAAG 139 TAGAAGCCCA GAAATTCGAC CCCATTGGTT CAAAACTAGG GTTTGAGATT GTCATTAAGC 2607 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAGAAGCCCA GAAATTCGAC CCCATTGGTT CAAAACTAGG GTTTGAGATT GTCATTAAGC 199 CAATGTTGGG CATGGTGACT GATGATGCAG TCGTGGCAGA GAACGAAGAG AAACTCGGGA 2547 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAATGTTGGG CATGGTGACT GATGATGCAG TCGTGGCAGA GAACGAAGAG AAACTCGGGA 259 AACTTCTTGA TGTGTATGAA TCTAGACTCA AGGAATCGAA ATATTTGGGT GGTGAGAGTT 2487 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACTTCTTGA TGTGTATGAA TCTAGACTCA AGGAATCGAA ATATTTGGGT GGTGAGAGTT 319 TCACCCTAGC TGATTTGCAC CACGCCCCGT CTTTGCACTA CTTGTCGGGG AGTAAAGTGA 2427 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCACCCTAGC TGATTTGCAC CACGCCCCGT CTTTGCACTA CTTGTCGGGG AGTAAAGTGA 379 AGAGCTTGTT CGATGCTAGG CCTCATGTTA GCGCTTGGGT TGCTGATATT T 2376 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| | AGAGCTTGTT CGATGCTAGG CCTCATGTTA GCGCTTGGGT TGCTGATATT T 430 hqPGS_C06HBa0024L21.1-5-_SGN-E301792+ (3266 3236,2774 2376) ******************************************************************************** EST sequence 18 +strand 416 n (File: SGN-E337275+) 1 AAGTTCCAGC TTTTGAAGAT GGAGATTTAA AGCTTTTTGA GTCAAGAGCT ATTACACAAT 61 ACATAGCTCA CACATATGCA GACAAAGGGA ACCAACTTTT ACCCAATGAC CCAAAGAAAA 121 TGGCAGTCAT GTCTGTATGG ATGGAAGTAG AAGCCCAGAA ATTCGACCCC ATTGGTTCAA 181 AACTAGGGTT TGAGATTGTC ATTAAGCCAA TGTTGGGCAT GGTGACTGAT GATGCAGTCG 241 TGGCAGAGAA CGAAGAGAAA CTCGGGAAAC TTCTTGATGT GTATGAATCT AGACTCAAGG 301 AATCGAAATA TTTGGGTGGT GAGAGTTTCA CCCTAGCTGA TTTGCACCAC GCCCCGTCTT 361 TGCACTACTT GTCGGGGAGT AAAGTGAAGA GCTTGTTCGA TGCTAGGCCT CATGTT Predicted gene structure (within gDNA segment 3329 to 1788): Exon 1 3274 3236 ( 39 n); cDNA 1 39 ( 39 n); score: 1.000 Intron 1 3235 2775 ( 461 n); Pd: 0.977 (s: 0), Pa: 0.998 (s: 1.00) Exon 2 2774 2398 ( 377 n); cDNA 40 416 ( 377 n); score: 1.000 MATCH C06HBa0024L21.1-5- SGN-E337275+ 1.000 416 1.000 C PGS_C06HBa0024L21.1-5-_SGN-E337275+ (3274 3236,2774 2398) Alignment (genomic DNA sequence = upper lines): AAGTTCCAGC TTTTGAAGAT GGAGATTTAA AGCTTTTTGG TATGTTTCCC TTAGGATCAT 3215 |||||||||| |||||||||| |||||||||| ||||||||| AAGTTCCAGC TTTTGAAGAT GGAGATTTAA AGCTTTTTG. .......... .......... 39 GATTGGCTAG AGATTGTTAT TTTTTTTTAT GTATAATATA TATATTAATT TGAACCTCGT 3155 .......... .......... .......... .......... .......... .......... 39 AAAATTAGTG GCTCCTCTAG TGGCGGACTC AGAATTTTTG ATAAAAGTAT GGGTTTATGA 3095 .......... .......... .......... .......... .......... .......... 39 TTTATTATAT ATACCTAAAA AATTATTTTA ATCATGCGTA TGTAATATGA TTTCTCAACA 3035 .......... .......... .......... .......... .......... .......... 39 AAGGGGGGTT TGGATGAATC TGGGACTCGT TGACTTAGTG GTTGAGGGTT TGAAAATTCA 2975 .......... .......... .......... .......... .......... .......... 39 ACTTGACCTT ATTTAGACCT CGATTCTCGT TAATCTAAAG ATAGAGAGGT TGTTTCTAAC 2915 .......... .......... .......... .......... .......... .......... 39 AGAGGTTCAG GATATAAGTA CTATGGAATC TTGCTTCAAT TCAATGAAAA TCATCACATA 2855 .......... .......... .......... .......... .......... .......... 39 ATTGATATTG AATTTACTTG AAACACACTT ATTTCTTTGG TTTTACGATG TTTGATATAT 2795 .......... .......... .......... .......... .......... .......... 39 GAATTATTGG GAAACTGCAG AGTCAAGAGC TATTACACAA TACATAGCTC ACACATATGC 2735 |||||||||| |||||||||| |||||||||| |||||||||| .......... .......... AGTCAAGAGC TATTACACAA TACATAGCTC ACACATATGC 79 AGACAAAGGG AACCAACTTT TACCCAATGA CCCAAAGAAA ATGGCAGTCA TGTCTGTATG 2675 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGACAAAGGG AACCAACTTT TACCCAATGA CCCAAAGAAA ATGGCAGTCA TGTCTGTATG 139 GATGGAAGTA GAAGCCCAGA AATTCGACCC CATTGGTTCA AAACTAGGGT TTGAGATTGT 2615 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATGGAAGTA GAAGCCCAGA AATTCGACCC CATTGGTTCA AAACTAGGGT TTGAGATTGT 199 CATTAAGCCA ATGTTGGGCA TGGTGACTGA TGATGCAGTC GTGGCAGAGA ACGAAGAGAA 2555 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATTAAGCCA ATGTTGGGCA TGGTGACTGA TGATGCAGTC GTGGCAGAGA ACGAAGAGAA 259 ACTCGGGAAA CTTCTTGATG TGTATGAATC TAGACTCAAG GAATCGAAAT ATTTGGGTGG 2495 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACTCGGGAAA CTTCTTGATG TGTATGAATC TAGACTCAAG GAATCGAAAT ATTTGGGTGG 319 TGAGAGTTTC ACCCTAGCTG ATTTGCACCA CGCCCCGTCT TTGCACTACT TGTCGGGGAG 2435 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAGAGTTTC ACCCTAGCTG ATTTGCACCA CGCCCCGTCT TTGCACTACT TGTCGGGGAG 379 TAAAGTGAAG AGCTTGTTCG ATGCTAGGCC TCATGTT 2398 |||||||||| |||||||||| |||||||||| ||||||| TAAAGTGAAG AGCTTGTTCG ATGCTAGGCC TCATGTT 416 hqPGS_C06HBa0024L21.1-5-_SGN-E337275+ (3274 3236,2774 2398) ******************************************************************************** EST sequence 25 +strand 599 n (File: SGN-E309123+) 1 ATCTCACACA CAAATTTCAT TTTCTACTTT CACTTTCTCT CTCTAGAAAA CAAAAATGGC 61 GATCAAGGTT CATGGCCCTA TGATGTCCCC TGCTGTTATG AGAGTCGTAG CTACACTCAA 121 AGAGAAAGAT CTTGATTTTG AACTTGTTCC TGTTAATATG CAAGCTGGTG ATCACAAAAA 181 GGAACCATTC ATTTCTCTAA ATCCGTTTGG TCAAGTTCCA GCTTTTGAAG ATGGAGATTT 241 AAAGCTTTTT GAGTCAAGAG CTATTACACA ATACATAGCT CACACATATG CAGACAAAGG 301 GAACCAACTT TTACCCAATG ACCCAAAGAA AATGGCAGTC ATGTCTGTAT GGATGGAAGT 361 AGAAGCCCAG AAATTCGACC CCATTGGTTC AAAACTAGGG TTTGAGATTG TCATTAAGCC 421 AATGTTGGGC ATGGTGACTG ATGATGCAGT CGTGGCAGAG AACGAAGAGA AACTCGGGAA 481 ACTTCTTGAT GTGTATGAAT CTAGACTCAA GGAATCGAAA TATTTGGGTG GTGAGAGTTT 541 CACCCTAGCT GATTTGCACC ACGCCCCGTC TTTGCACTAC TTGTCGGGGA GTAAAGTGA Predicted gene structure (within gDNA segment 3329 to 1817): Exon 1 3284 3236 ( 49 n); cDNA 203 251 ( 49 n); score: 1.000 Intron 1 3235 2775 ( 461 n); Pd: 0.977 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 2 2774 2427 ( 348 n); cDNA 252 599 ( 348 n); score: 1.000 MATCH C06HBa0024L21.1-5- SGN-E309123+ 1.000 397 0.663 C PGS_C06HBa0024L21.1-5-_SGN-E309123+ (3284 3236,2774 2427) Alignment (genomic DNA sequence = upper lines): CCGTTTGGTC AAGTTCCAGC TTTTGAAGAT GGAGATTTAA AGCTTTTTGG TATGTTTCCC 3225 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| CCGTTTGGTC AAGTTCCAGC TTTTGAAGAT GGAGATTTAA AGCTTTTTG. .......... 251 TTAGGATCAT GATTGGCTAG AGATTGTTAT TTTTTTTTAT GTATAATATA TATATTAATT 3165 .......... .......... .......... .......... .......... .......... 251 TGAACCTCGT AAAATTAGTG GCTCCTCTAG TGGCGGACTC AGAATTTTTG ATAAAAGTAT 3105 .......... .......... .......... .......... .......... .......... 251 GGGTTTATGA TTTATTATAT ATACCTAAAA AATTATTTTA ATCATGCGTA TGTAATATGA 3045 .......... .......... .......... .......... .......... .......... 251 TTTCTCAACA AAGGGGGGTT TGGATGAATC TGGGACTCGT TGACTTAGTG GTTGAGGGTT 2985 .......... .......... .......... .......... .......... .......... 251 TGAAAATTCA ACTTGACCTT ATTTAGACCT CGATTCTCGT TAATCTAAAG ATAGAGAGGT 2925 .......... .......... .......... .......... .......... .......... 251 TGTTTCTAAC AGAGGTTCAG GATATAAGTA CTATGGAATC TTGCTTCAAT TCAATGAAAA 2865 .......... .......... .......... .......... .......... .......... 251 TCATCACATA ATTGATATTG AATTTACTTG AAACACACTT ATTTCTTTGG TTTTACGATG 2805 .......... .......... .......... .......... .......... .......... 251 TTTGATATAT GAATTATTGG GAAACTGCAG AGTCAAGAGC TATTACACAA TACATAGCTC 2745 |||||||||| |||||||||| |||||||||| .......... .......... .......... AGTCAAGAGC TATTACACAA TACATAGCTC 281 ACACATATGC AGACAAAGGG AACCAACTTT TACCCAATGA CCCAAAGAAA ATGGCAGTCA 2685 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACACATATGC AGACAAAGGG AACCAACTTT TACCCAATGA CCCAAAGAAA ATGGCAGTCA 341 TGTCTGTATG GATGGAAGTA GAAGCCCAGA AATTCGACCC CATTGGTTCA AAACTAGGGT 2625 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTCTGTATG GATGGAAGTA GAAGCCCAGA AATTCGACCC CATTGGTTCA AAACTAGGGT 401 TTGAGATTGT CATTAAGCCA ATGTTGGGCA TGGTGACTGA TGATGCAGTC GTGGCAGAGA 2565 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGAGATTGT CATTAAGCCA ATGTTGGGCA TGGTGACTGA TGATGCAGTC GTGGCAGAGA 461 ACGAAGAGAA ACTCGGGAAA CTTCTTGATG TGTATGAATC TAGACTCAAG GAATCGAAAT 2505 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACGAAGAGAA ACTCGGGAAA CTTCTTGATG TGTATGAATC TAGACTCAAG GAATCGAAAT 521 ATTTGGGTGG TGAGAGTTTC ACCCTAGCTG ATTTGCACCA CGCCCCGTCT TTGCACTACT 2445 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTTGGGTGG TGAGAGTTTC ACCCTAGCTG ATTTGCACCA CGCCCCGTCT TTGCACTACT 581 TGTCGGGGAG TAAAGTGA 2427 |||||||||| |||||||| TGTCGGGGAG TAAAGTGA 599 hqPGS_C06HBa0024L21.1-5-_SGN-E309123+ (3284 3236,2774 2427) ******************************************************************************** EST sequence 29 +strand 574 n (File: SGN-E283551+) 1 TCATTTTCTA CTTTCACTTT CTCTCTCTAG AAAACAAAAA TGGCGATCAA GGTTCATGGC 61 CCTATGATGT CCCCTGCTGT TATGAGAGTC GTAGCTACAC TCAAAGAGAA AGATCTTGAT 121 TTTGAACTTG TTCCTGTTAA TATGCAAGCT GGTGATCACA AAAAGGAACC ATTCATTTCT 181 CTAAATCCGT TTGGTCAAGT TCCAGCTTTT GAAGATGGAG ATTTAAAGCT TTTTGAGTCA 241 AGAGCTATTA CACAATACAT AGCTCACACA TATGCAGACA AAGGGAACCA ACTTTTACCC 301 AATGACCCAA AGAAAATGGC AGTCATGTCT GTATGGATGG AAGTAGAAGC CCAGAAATTC 361 GACCCCATTG GTTCAAAACT AGGGTTTGAG ATTGTCATTA AGCCAATGTT GGGCATGGTG 421 ACTGATGATG CAGTCGTGGC AGAGAACGAA GAGAAACTCG GGAAACTTCT TGATGTGTAT 481 GAATCTAGAC TCAAGGAATC GAAATATTTG GGTGGTGAGA GTTTCACCCT AGCTGATTTG 541 CACCACGCCC CGTCTTTGCA CTACTTGTCG GGGA Predicted gene structure (within gDNA segment 3329 to 1826): Exon 1 3284 3236 ( 49 n); cDNA 187 235 ( 49 n); score: 1.000 Intron 1 3235 2775 ( 461 n); Pd: 0.977 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 2 2774 2436 ( 339 n); cDNA 236 574 ( 339 n); score: 1.000 MATCH C06HBa0024L21.1-5- SGN-E283551+ 1.000 388 0.676 C PGS_C06HBa0024L21.1-5-_SGN-E283551+ (3284 3236,2774 2436) Alignment (genomic DNA sequence = upper lines): CCGTTTGGTC AAGTTCCAGC TTTTGAAGAT GGAGATTTAA AGCTTTTTGG TATGTTTCCC 3225 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| CCGTTTGGTC AAGTTCCAGC TTTTGAAGAT GGAGATTTAA AGCTTTTTG. .......... 235 TTAGGATCAT GATTGGCTAG AGATTGTTAT TTTTTTTTAT GTATAATATA TATATTAATT 3165 .......... .......... .......... .......... .......... .......... 235 TGAACCTCGT AAAATTAGTG GCTCCTCTAG TGGCGGACTC AGAATTTTTG ATAAAAGTAT 3105 .......... .......... .......... .......... .......... .......... 235 GGGTTTATGA TTTATTATAT ATACCTAAAA AATTATTTTA ATCATGCGTA TGTAATATGA 3045 .......... .......... .......... .......... .......... .......... 235 TTTCTCAACA AAGGGGGGTT TGGATGAATC TGGGACTCGT TGACTTAGTG GTTGAGGGTT 2985 .......... .......... .......... .......... .......... .......... 235 TGAAAATTCA ACTTGACCTT ATTTAGACCT CGATTCTCGT TAATCTAAAG ATAGAGAGGT 2925 .......... .......... .......... .......... .......... .......... 235 TGTTTCTAAC AGAGGTTCAG GATATAAGTA CTATGGAATC TTGCTTCAAT TCAATGAAAA 2865 .......... .......... .......... .......... .......... .......... 235 TCATCACATA ATTGATATTG AATTTACTTG AAACACACTT ATTTCTTTGG TTTTACGATG 2805 .......... .......... .......... .......... .......... .......... 235 TTTGATATAT GAATTATTGG GAAACTGCAG AGTCAAGAGC TATTACACAA TACATAGCTC 2745 |||||||||| |||||||||| |||||||||| .......... .......... .......... AGTCAAGAGC TATTACACAA TACATAGCTC 265 ACACATATGC AGACAAAGGG AACCAACTTT TACCCAATGA CCCAAAGAAA ATGGCAGTCA 2685 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACACATATGC AGACAAAGGG AACCAACTTT TACCCAATGA CCCAAAGAAA ATGGCAGTCA 325 TGTCTGTATG GATGGAAGTA GAAGCCCAGA AATTCGACCC CATTGGTTCA AAACTAGGGT 2625 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTCTGTATG GATGGAAGTA GAAGCCCAGA AATTCGACCC CATTGGTTCA AAACTAGGGT 385 TTGAGATTGT CATTAAGCCA ATGTTGGGCA TGGTGACTGA TGATGCAGTC GTGGCAGAGA 2565 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGAGATTGT CATTAAGCCA ATGTTGGGCA TGGTGACTGA TGATGCAGTC GTGGCAGAGA 445 ACGAAGAGAA ACTCGGGAAA CTTCTTGATG TGTATGAATC TAGACTCAAG GAATCGAAAT 2505 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACGAAGAGAA ACTCGGGAAA CTTCTTGATG TGTATGAATC TAGACTCAAG GAATCGAAAT 505 ATTTGGGTGG TGAGAGTTTC ACCCTAGCTG ATTTGCACCA CGCCCCGTCT TTGCACTACT 2445 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTTGGGTGG TGAGAGTTTC ACCCTAGCTG ATTTGCACCA CGCCCCGTCT TTGCACTACT 565 TGTCGGGGA 2436 ||||||||| TGTCGGGGA 574 hqPGS_C06HBa0024L21.1-5-_SGN-E283551+ (3284 3236,2774 2436) ******************************************************************************** EST sequence 9 +strand 591 n (File: SGN-E304236+) 1 ACATCTCACA CACAAATTTC ATTTTCTACT TTCACTTTCT CTCTCTAGAA AACAAAAATG 61 GCGATCAAGG TTCATGGCCC TATGATGTCC CCTGCTGTTA TGAGAGTCGT AGCTACACTC 121 AAAGAGAAAG ATCTTGATTT TGAACTTGTT CCTGTTAATA TGCAAGCTGG TGATCACAAA 181 AAGGAACCAT TCATTTCTCT AAATCCGTTT GGTCAAGTTC CAGCTTTTGA AGATGGAGAT 241 TTAAAGCTTT TTGAGTCAAG AGCTATTACA CAATACATAG CTCACACATA TGCAGACAAA 301 GGGAACCAAC TTTTACCCAA TGACCCAAAG AAAATGGCAG TCATGTCTGT ATGGATGGAA 361 GTAGAAGCCC AGAAATTCGA CCCCATTGGT TCAAAACTAG GGTTTGAGAT TGTCATTAAG 421 CCAATGTTGG GCATGGTGAC TGATGATGCA GTCGTGGCAG AGAACGAAGA GAAACTCGGG 481 AAACTTCTTG ATGTGTATGA ATCTAGACTC AAGGAATCGA AATATTTGGG TGGTGAGAGT 541 TTCACCCTAG CTGATTTGCA CCACGCCCCG TCTTTGCACT ACTTGTCGGG G Predicted gene structure (within gDNA segment 3329 to 1827): Exon 1 3284 3236 ( 49 n); cDNA 205 253 ( 49 n); score: 1.000 Intron 1 3235 2775 ( 461 n); Pd: 0.977 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 2 2774 2437 ( 338 n); cDNA 254 591 ( 338 n); score: 1.000 MATCH C06HBa0024L21.1-5- SGN-E304236+ 1.000 387 0.655 C PGS_C06HBa0024L21.1-5-_SGN-E304236+ (3284 3236,2774 2437) Alignment (genomic DNA sequence = upper lines): CCGTTTGGTC AAGTTCCAGC TTTTGAAGAT GGAGATTTAA AGCTTTTTGG TATGTTTCCC 3225 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| CCGTTTGGTC AAGTTCCAGC TTTTGAAGAT GGAGATTTAA AGCTTTTTG. .......... 253 TTAGGATCAT GATTGGCTAG AGATTGTTAT TTTTTTTTAT GTATAATATA TATATTAATT 3165 .......... .......... .......... .......... .......... .......... 253 TGAACCTCGT AAAATTAGTG GCTCCTCTAG TGGCGGACTC AGAATTTTTG ATAAAAGTAT 3105 .......... .......... .......... .......... .......... .......... 253 GGGTTTATGA TTTATTATAT ATACCTAAAA AATTATTTTA ATCATGCGTA TGTAATATGA 3045 .......... .......... .......... .......... .......... .......... 253 TTTCTCAACA AAGGGGGGTT TGGATGAATC TGGGACTCGT TGACTTAGTG GTTGAGGGTT 2985 .......... .......... .......... .......... .......... .......... 253 TGAAAATTCA ACTTGACCTT ATTTAGACCT CGATTCTCGT TAATCTAAAG ATAGAGAGGT 2925 .......... .......... .......... .......... .......... .......... 253 TGTTTCTAAC AGAGGTTCAG GATATAAGTA CTATGGAATC TTGCTTCAAT TCAATGAAAA 2865 .......... .......... .......... .......... .......... .......... 253 TCATCACATA ATTGATATTG AATTTACTTG AAACACACTT ATTTCTTTGG TTTTACGATG 2805 .......... .......... .......... .......... .......... .......... 253 TTTGATATAT GAATTATTGG GAAACTGCAG AGTCAAGAGC TATTACACAA TACATAGCTC 2745 |||||||||| |||||||||| |||||||||| .......... .......... .......... AGTCAAGAGC TATTACACAA TACATAGCTC 283 ACACATATGC AGACAAAGGG AACCAACTTT TACCCAATGA CCCAAAGAAA ATGGCAGTCA 2685 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACACATATGC AGACAAAGGG AACCAACTTT TACCCAATGA CCCAAAGAAA ATGGCAGTCA 343 TGTCTGTATG GATGGAAGTA GAAGCCCAGA AATTCGACCC CATTGGTTCA AAACTAGGGT 2625 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTCTGTATG GATGGAAGTA GAAGCCCAGA AATTCGACCC CATTGGTTCA AAACTAGGGT 403 TTGAGATTGT CATTAAGCCA ATGTTGGGCA TGGTGACTGA TGATGCAGTC GTGGCAGAGA 2565 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGAGATTGT CATTAAGCCA ATGTTGGGCA TGGTGACTGA TGATGCAGTC GTGGCAGAGA 463 ACGAAGAGAA ACTCGGGAAA CTTCTTGATG TGTATGAATC TAGACTCAAG GAATCGAAAT 2505 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACGAAGAGAA ACTCGGGAAA CTTCTTGATG TGTATGAATC TAGACTCAAG GAATCGAAAT 523 ATTTGGGTGG TGAGAGTTTC ACCCTAGCTG ATTTGCACCA CGCCCCGTCT TTGCACTACT 2445 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTTGGGTGG TGAGAGTTTC ACCCTAGCTG ATTTGCACCA CGCCCCGTCT TTGCACTACT 583 TGTCGGGG 2437 |||||||| TGTCGGGG 591 hqPGS_C06HBa0024L21.1-5-_SGN-E304236+ (3284 3236,2774 2437) ******************************************************************************** EST sequence 32 +strand 429 n (File: SGN-E293109+) 1 GCAAGCTGGT GATCACAAAA AGGAACCATT CATTTCTCTA AATCCGCTTG GTCAAGTTCC 61 AGCTTTTGAA GATGGAGATT TAAAGCTTTT TGAGTCAAGA GCTATTACAC AATACATAGC 121 TCACACATAT GCAGACAAAG GGAACCAACT TTTACCCAAT GACCCAAAGA AAATGGCAGT 181 CATGTCTGTA TGGATGGAAG TAGAAGCCCA GAAATTCGAC CCCATTGGTT CAAAACTAGG 241 GTTTGAGATT GTCATTAAGC CAATGCTGGG CATGGCGACT GATGATGCAG TCGTGGCAGA 301 GAACGAAGAG AAACTCGGGA AACTTCTTGA TGTGTATGAA TCTAGACTCA AGGAATCGAA 361 ATATTTGGGT GGTGAGAGTT TCACCCTAGC TGATTTGCAC CACGCCCCGT CTTTGCACTA 421 CTTGTCGGG Predicted gene structure (within gDNA segment 3329 to 1828): Exon 1 3284 3236 ( 49 n); cDNA 44 92 ( 49 n); score: 0.980 Intron 1 3235 2775 ( 461 n); Pd: 0.977 (s: 0.98), Pa: 0.998 (s: 1.00) Exon 2 2774 2438 ( 337 n); cDNA 93 429 ( 337 n); score: 0.994 MATCH C06HBa0024L21.1-5- SGN-E293109+ 0.994 386 0.900 C PGS_C06HBa0024L21.1-5-_SGN-E293109+ (3284 3236,2774 2438) Alignment (genomic DNA sequence = upper lines): CCGTTTGGTC AAGTTCCAGC TTTTGAAGAT GGAGATTTAA AGCTTTTTGG TATGTTTCCC 3225 ||| |||||| |||||||||| |||||||||| |||||||||| ||||||||| CCGCTTGGTC AAGTTCCAGC TTTTGAAGAT GGAGATTTAA AGCTTTTTG. .......... 92 TTAGGATCAT GATTGGCTAG AGATTGTTAT TTTTTTTTAT GTATAATATA TATATTAATT 3165 .......... .......... .......... .......... .......... .......... 92 TGAACCTCGT AAAATTAGTG GCTCCTCTAG TGGCGGACTC AGAATTTTTG ATAAAAGTAT 3105 .......... .......... .......... .......... .......... .......... 92 GGGTTTATGA TTTATTATAT ATACCTAAAA AATTATTTTA ATCATGCGTA TGTAATATGA 3045 .......... .......... .......... .......... .......... .......... 92 TTTCTCAACA AAGGGGGGTT TGGATGAATC TGGGACTCGT TGACTTAGTG GTTGAGGGTT 2985 .......... .......... .......... .......... .......... .......... 92 TGAAAATTCA ACTTGACCTT ATTTAGACCT CGATTCTCGT TAATCTAAAG ATAGAGAGGT 2925 .......... .......... .......... .......... .......... .......... 92 TGTTTCTAAC AGAGGTTCAG GATATAAGTA CTATGGAATC TTGCTTCAAT TCAATGAAAA 2865 .......... .......... .......... .......... .......... .......... 92 TCATCACATA ATTGATATTG AATTTACTTG AAACACACTT ATTTCTTTGG TTTTACGATG 2805 .......... .......... .......... .......... .......... .......... 92 TTTGATATAT GAATTATTGG GAAACTGCAG AGTCAAGAGC TATTACACAA TACATAGCTC 2745 |||||||||| |||||||||| |||||||||| .......... .......... .......... AGTCAAGAGC TATTACACAA TACATAGCTC 122 ACACATATGC AGACAAAGGG AACCAACTTT TACCCAATGA CCCAAAGAAA ATGGCAGTCA 2685 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACACATATGC AGACAAAGGG AACCAACTTT TACCCAATGA CCCAAAGAAA ATGGCAGTCA 182 TGTCTGTATG GATGGAAGTA GAAGCCCAGA AATTCGACCC CATTGGTTCA AAACTAGGGT 2625 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTCTGTATG GATGGAAGTA GAAGCCCAGA AATTCGACCC CATTGGTTCA AAACTAGGGT 242 TTGAGATTGT CATTAAGCCA ATGTTGGGCA TGGTGACTGA TGATGCAGTC GTGGCAGAGA 2565 |||||||||| |||||||||| ||| |||||| ||| |||||| |||||||||| |||||||||| TTGAGATTGT CATTAAGCCA ATGCTGGGCA TGGCGACTGA TGATGCAGTC GTGGCAGAGA 302 ACGAAGAGAA ACTCGGGAAA CTTCTTGATG TGTATGAATC TAGACTCAAG GAATCGAAAT 2505 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACGAAGAGAA ACTCGGGAAA CTTCTTGATG TGTATGAATC TAGACTCAAG GAATCGAAAT 362 ATTTGGGTGG TGAGAGTTTC ACCCTAGCTG ATTTGCACCA CGCCCCGTCT TTGCACTACT 2445 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTTGGGTGG TGAGAGTTTC ACCCTAGCTG ATTTGCACCA CGCCCCGTCT TTGCACTACT 422 TGTCGGG 2438 ||||||| TGTCGGG 429 hqPGS_C06HBa0024L21.1-5-_SGN-E293109+ (3284 3236,2774 2438) ******************************************************************************** EST sequence 14 +strand 539 n (File: SGN-E252214+) 1 AAAACAAAAA TGGCGATCAA GGTTCATGGC CCTATGATGT CCCCTGCTGT TATGAGAGTC 61 GTAGCTACAC TCAAAGAGAA AGATCTTGAT TTTGAACTTG TTCCTGTTAA TATGCAAGCT 121 GGTGATCACA AAAAGGAACC ATTCATTTCT CTAAATCCGT TTGGTCAAGT TCCAGCTTTT 181 GAAGATGGAG ATTTAAAGCT TTTTGAGTCA AGAGCTATTA CACAATACAT AGCTCACACA 241 TATGCAGACA AAGGGAACCA ACTTTTACCC AATGACCCAA AGAAAATGGC AGTCATGTCT 301 GTATGGATGG AAGTAGAAGC CCAGAAATTC GACCCCATTG GTTCAAAACT AGGGTTTGAG 361 ATTGTCATTA AGCCAATGTT GGGCATGGTG ACTGATGATG CAGTCGTGGC AGAGAACGAA 421 GAGAAACTCG GGAAACTTCT TGATGTGTAT GAATCTAGAC TCAAGGAATC GAAATATTTG 481 GGTGGTGAGA GTTTCACCCT AGCTGATTTG CACCACGCCC CGTCTTTGCA CTACTTGTC Predicted gene structure (within gDNA segment 3329 to 1831): Exon 1 3284 3236 ( 49 n); cDNA 157 205 ( 49 n); score: 1.000 Intron 1 3235 2775 ( 461 n); Pd: 0.977 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 2 2774 2441 ( 334 n); cDNA 206 539 ( 334 n); score: 1.000 MATCH C06HBa0024L21.1-5- SGN-E252214+ 1.000 383 0.711 C PGS_C06HBa0024L21.1-5-_SGN-E252214+ (3284 3236,2774 2441) Alignment (genomic DNA sequence = upper lines): CCGTTTGGTC AAGTTCCAGC TTTTGAAGAT GGAGATTTAA AGCTTTTTGG TATGTTTCCC 3225 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| CCGTTTGGTC AAGTTCCAGC TTTTGAAGAT GGAGATTTAA AGCTTTTTG. .......... 205 TTAGGATCAT GATTGGCTAG AGATTGTTAT TTTTTTTTAT GTATAATATA TATATTAATT 3165 .......... .......... .......... .......... .......... .......... 205 TGAACCTCGT AAAATTAGTG GCTCCTCTAG TGGCGGACTC AGAATTTTTG ATAAAAGTAT 3105 .......... .......... .......... .......... .......... .......... 205 GGGTTTATGA TTTATTATAT ATACCTAAAA AATTATTTTA ATCATGCGTA TGTAATATGA 3045 .......... .......... .......... .......... .......... .......... 205 TTTCTCAACA AAGGGGGGTT TGGATGAATC TGGGACTCGT TGACTTAGTG GTTGAGGGTT 2985 .......... .......... .......... .......... .......... .......... 205 TGAAAATTCA ACTTGACCTT ATTTAGACCT CGATTCTCGT TAATCTAAAG ATAGAGAGGT 2925 .......... .......... .......... .......... .......... .......... 205 TGTTTCTAAC AGAGGTTCAG GATATAAGTA CTATGGAATC TTGCTTCAAT TCAATGAAAA 2865 .......... .......... .......... .......... .......... .......... 205 TCATCACATA ATTGATATTG AATTTACTTG AAACACACTT ATTTCTTTGG TTTTACGATG 2805 .......... .......... .......... .......... .......... .......... 205 TTTGATATAT GAATTATTGG GAAACTGCAG AGTCAAGAGC TATTACACAA TACATAGCTC 2745 |||||||||| |||||||||| |||||||||| .......... .......... .......... AGTCAAGAGC TATTACACAA TACATAGCTC 235 ACACATATGC AGACAAAGGG AACCAACTTT TACCCAATGA CCCAAAGAAA ATGGCAGTCA 2685 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACACATATGC AGACAAAGGG AACCAACTTT TACCCAATGA CCCAAAGAAA ATGGCAGTCA 295 TGTCTGTATG GATGGAAGTA GAAGCCCAGA AATTCGACCC CATTGGTTCA AAACTAGGGT 2625 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTCTGTATG GATGGAAGTA GAAGCCCAGA AATTCGACCC CATTGGTTCA AAACTAGGGT 355 TTGAGATTGT CATTAAGCCA ATGTTGGGCA TGGTGACTGA TGATGCAGTC GTGGCAGAGA 2565 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGAGATTGT CATTAAGCCA ATGTTGGGCA TGGTGACTGA TGATGCAGTC GTGGCAGAGA 415 ACGAAGAGAA ACTCGGGAAA CTTCTTGATG TGTATGAATC TAGACTCAAG GAATCGAAAT 2505 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACGAAGAGAA ACTCGGGAAA CTTCTTGATG TGTATGAATC TAGACTCAAG GAATCGAAAT 475 ATTTGGGTGG TGAGAGTTTC ACCCTAGCTG ATTTGCACCA CGCCCCGTCT TTGCACTACT 2445 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTTGGGTGG TGAGAGTTTC ACCCTAGCTG ATTTGCACCA CGCCCCGTCT TTGCACTACT 535 TGTC 2441 |||| TGTC 539 hqPGS_C06HBa0024L21.1-5-_SGN-E252214+ (3284 3236,2774 2441) ******************************************************************************** EST sequence 15 +strand 577 n (File: SGN-E312205+) 1 TCACACACAA ATTTCATTTT CTACTTTCAC TTTCTCTCTC TAGAAAACAA AAATGGCGAT 61 CAAGGTTCAT GGCCCTATGA TGTCCCCTGC TGTTATGAGA GTCGTAGCTA CACTCAAAGA 121 GAAAGATCTT GATTTTGAAC TTGTTCCTGT TAATATGCAA GCTGGTGATC ACAAAAAGGA 181 ACCATTCATT TCTCTAAATC CGTTTGGTCA AGTTCCAGCT TTTGAAGATG GAGATTTAAA 241 GCTTTTTGAG TCAAGAGCTA TTACACAATA CATAGCTCAC ACATATGCAG ACAAAGGGAA 301 CCAACTTTTA CCCAATGACC CAAAGAAAAT GGCAGTCATG TCTGTATGGA TGGAAGTAGA 361 AGCCCAGAAA TTCGACCCCA TTGGTTCAAA ACTAGGGTTT GAGATTGTCA TTAAGCCAAT 421 GTTGGGCATG GTGACTGATG ATGCAGTCGT GGCAGAGAAC GAAGAGAAAC TCGGGAAACT 481 TCTTGATGTG TATGAATCTA GACTCAAGGA ATCGAAATAT TTGGGTGGTG AGAGTTTCAC 541 CCTAGCTGAT TTGCACCACG CCCCGTCTTT GCACTAC Predicted gene structure (within gDNA segment 3329 to 1836): Exon 1 3284 3236 ( 49 n); cDNA 200 248 ( 49 n); score: 1.000 Intron 1 3235 2775 ( 461 n); Pd: 0.977 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 2 2774 2446 ( 329 n); cDNA 249 577 ( 329 n); score: 1.000 MATCH C06HBa0024L21.1-5- SGN-E312205+ 1.000 378 0.655 C PGS_C06HBa0024L21.1-5-_SGN-E312205+ (3284 3236,2774 2446) Alignment (genomic DNA sequence = upper lines): CCGTTTGGTC AAGTTCCAGC TTTTGAAGAT GGAGATTTAA AGCTTTTTGG TATGTTTCCC 3225 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| CCGTTTGGTC AAGTTCCAGC TTTTGAAGAT GGAGATTTAA AGCTTTTTG. .......... 248 TTAGGATCAT GATTGGCTAG AGATTGTTAT TTTTTTTTAT GTATAATATA TATATTAATT 3165 .......... .......... .......... .......... .......... .......... 248 TGAACCTCGT AAAATTAGTG GCTCCTCTAG TGGCGGACTC AGAATTTTTG ATAAAAGTAT 3105 .......... .......... .......... .......... .......... .......... 248 GGGTTTATGA TTTATTATAT ATACCTAAAA AATTATTTTA ATCATGCGTA TGTAATATGA 3045 .......... .......... .......... .......... .......... .......... 248 TTTCTCAACA AAGGGGGGTT TGGATGAATC TGGGACTCGT TGACTTAGTG GTTGAGGGTT 2985 .......... .......... .......... .......... .......... .......... 248 TGAAAATTCA ACTTGACCTT ATTTAGACCT CGATTCTCGT TAATCTAAAG ATAGAGAGGT 2925 .......... .......... .......... .......... .......... .......... 248 TGTTTCTAAC AGAGGTTCAG GATATAAGTA CTATGGAATC TTGCTTCAAT TCAATGAAAA 2865 .......... .......... .......... .......... .......... .......... 248 TCATCACATA ATTGATATTG AATTTACTTG AAACACACTT ATTTCTTTGG TTTTACGATG 2805 .......... .......... .......... .......... .......... .......... 248 TTTGATATAT GAATTATTGG GAAACTGCAG AGTCAAGAGC TATTACACAA TACATAGCTC 2745 |||||||||| |||||||||| |||||||||| .......... .......... .......... AGTCAAGAGC TATTACACAA TACATAGCTC 278 ACACATATGC AGACAAAGGG AACCAACTTT TACCCAATGA CCCAAAGAAA ATGGCAGTCA 2685 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACACATATGC AGACAAAGGG AACCAACTTT TACCCAATGA CCCAAAGAAA ATGGCAGTCA 338 TGTCTGTATG GATGGAAGTA GAAGCCCAGA AATTCGACCC CATTGGTTCA AAACTAGGGT 2625 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTCTGTATG GATGGAAGTA GAAGCCCAGA AATTCGACCC CATTGGTTCA AAACTAGGGT 398 TTGAGATTGT CATTAAGCCA ATGTTGGGCA TGGTGACTGA TGATGCAGTC GTGGCAGAGA 2565 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGAGATTGT CATTAAGCCA ATGTTGGGCA TGGTGACTGA TGATGCAGTC GTGGCAGAGA 458 ACGAAGAGAA ACTCGGGAAA CTTCTTGATG TGTATGAATC TAGACTCAAG GAATCGAAAT 2505 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACGAAGAGAA ACTCGGGAAA CTTCTTGATG TGTATGAATC TAGACTCAAG GAATCGAAAT 518 ATTTGGGTGG TGAGAGTTTC ACCCTAGCTG ATTTGCACCA CGCCCCGTCT TTGCACTAC 2446 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| ATTTGGGTGG TGAGAGTTTC ACCCTAGCTG ATTTGCACCA CGCCCCGTCT TTGCACTAC 577 hqPGS_C06HBa0024L21.1-5-_SGN-E312205+ (3284 3236,2774 2446) ******************************************************************************** EST sequence 17 +strand 558 n (File: SGN-E318444+) 1 TCACACACAA ATTTCATTGT CTACTTTCAC TTTCTCTCTC TAGAAAACAA AAATGGCGAT 61 CAAGGTTCAT GGCCCTATGA TGTCCCCTGC TGTTATGAGA GTCGTAGCTA CACTCAAAGA 121 GAAAGATCTT GATTTTGAAC TTGTTCCTGT TAATATGCAA GCTGGTGATC ACAAAAAGGA 181 ACCATTCATT TCTCTAAATC CGTTTGGTCA AGTTCCAGCT TTTGAAGATG GAGATTTAAA 241 GCTTTTTGAG TCAAGAGCTA TTACACAATA CATAGCTCAC ACATATGCGG ACAAAGGGAA 301 CCAACTTTTA CCCAATGACC CCACGAAAAT GGCAGTCATG TCTGTATGGA TGGAAGTAGA 361 AGCCCAGAAA TTCGACCCCA TTGGTTCAAA ACTAGGGTTT GAGATTGTCA TTAAGCCAAT 421 GTTGGGCATG GTGACTGATG ATGCAATCGT GGCAGAGAAC GAAGAGAAAC TCGGGAAACT 481 TCTTGATGTG TATGAATCTA GACTCAAGGA ATCGAAATAT TTGGGTGGTG AGAGATTCAC 541 CCTAGCTGAT TTGCACCA Predicted gene structure (within gDNA segment 3329 to 1855): Exon 1 3284 3236 ( 49 n); cDNA 200 248 ( 49 n); score: 1.000 Intron 1 3235 2775 ( 461 n); Pd: 0.977 (s: 1.00), Pa: 0.998 (s: 0.98) Exon 2 2774 2465 ( 310 n); cDNA 249 558 ( 310 n); score: 0.984 MATCH C06HBa0024L21.1-5- SGN-E318444+ 0.984 359 0.643 C PGS_C06HBa0024L21.1-5-_SGN-E318444+ (3284 3236,2774 2465) Alignment (genomic DNA sequence = upper lines): CCGTTTGGTC AAGTTCCAGC TTTTGAAGAT GGAGATTTAA AGCTTTTTGG TATGTTTCCC 3225 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| CCGTTTGGTC AAGTTCCAGC TTTTGAAGAT GGAGATTTAA AGCTTTTTG. .......... 248 TTAGGATCAT GATTGGCTAG AGATTGTTAT TTTTTTTTAT GTATAATATA TATATTAATT 3165 .......... .......... .......... .......... .......... .......... 248 TGAACCTCGT AAAATTAGTG GCTCCTCTAG TGGCGGACTC AGAATTTTTG ATAAAAGTAT 3105 .......... .......... .......... .......... .......... .......... 248 GGGTTTATGA TTTATTATAT ATACCTAAAA AATTATTTTA ATCATGCGTA TGTAATATGA 3045 .......... .......... .......... .......... .......... .......... 248 TTTCTCAACA AAGGGGGGTT TGGATGAATC TGGGACTCGT TGACTTAGTG GTTGAGGGTT 2985 .......... .......... .......... .......... .......... .......... 248 TGAAAATTCA ACTTGACCTT ATTTAGACCT CGATTCTCGT TAATCTAAAG ATAGAGAGGT 2925 .......... .......... .......... .......... .......... .......... 248 TGTTTCTAAC AGAGGTTCAG GATATAAGTA CTATGGAATC TTGCTTCAAT TCAATGAAAA 2865 .......... .......... .......... .......... .......... .......... 248 TCATCACATA ATTGATATTG AATTTACTTG AAACACACTT ATTTCTTTGG TTTTACGATG 2805 .......... .......... .......... .......... .......... .......... 248 TTTGATATAT GAATTATTGG GAAACTGCAG AGTCAAGAGC TATTACACAA TACATAGCTC 2745 |||||||||| |||||||||| |||||||||| .......... .......... .......... AGTCAAGAGC TATTACACAA TACATAGCTC 278 ACACATATGC AGACAAAGGG AACCAACTTT TACCCAATGA CCCAAAGAAA ATGGCAGTCA 2685 |||||||||| ||||||||| |||||||||| |||||||||| ||| | |||| |||||||||| ACACATATGC GGACAAAGGG AACCAACTTT TACCCAATGA CCCCACGAAA ATGGCAGTCA 338 TGTCTGTATG GATGGAAGTA GAAGCCCAGA AATTCGACCC CATTGGTTCA AAACTAGGGT 2625 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTCTGTATG GATGGAAGTA GAAGCCCAGA AATTCGACCC CATTGGTTCA AAACTAGGGT 398 TTGAGATTGT CATTAAGCCA ATGTTGGGCA TGGTGACTGA TGATGCAGTC GTGGCAGAGA 2565 |||||||||| |||||||||| |||||||||| |||||||||| ||||||| || |||||||||| TTGAGATTGT CATTAAGCCA ATGTTGGGCA TGGTGACTGA TGATGCAATC GTGGCAGAGA 458 ACGAAGAGAA ACTCGGGAAA CTTCTTGATG TGTATGAATC TAGACTCAAG GAATCGAAAT 2505 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACGAAGAGAA ACTCGGGAAA CTTCTTGATG TGTATGAATC TAGACTCAAG GAATCGAAAT 518 ATTTGGGTGG TGAGAGTTTC ACCCTAGCTG ATTTGCACCA 2465 |||||||||| |||||| ||| |||||||||| |||||||||| ATTTGGGTGG TGAGAGATTC ACCCTAGCTG ATTTGCACCA 558 hqPGS_C06HBa0024L21.1-5-_SGN-E318444+ (3284 3236,2774 2465) ******************************************************************************** EST sequence 27 +strand 553 n (File: SGN-E290753+) 1 ATCTCACACA CAAATTTCAT TTTCTACTTT CACTTTCTCT CTCTAGAAAA CAAAAATGGC 61 GATCAAGGTT CATGGCCCTA TGATGTCCCC TGCTGTTATG AGAGTCGTAG CTACACTCAA 121 AGAGAAAGAT CTTGATTTTG AACTTGTTCC TGTTAATATG CAAGCTGGTG ATCACAAAAA 181 GGAACCATTC ATTTCTCTAA ATCCGTTTGG TCAAGTTCCA GCTTTTGAAG ATGGAGATTT 241 AAAGCTTTTT GAGTCAAGAG CTATTACACA ATACATAGCT CACACATATG CAGACAAAGG 301 GAACCAACTT TTACCCAATG ACCCAAAGAA AATGGCAGTC ATGTCTGTAT GGATGGAAGT 361 AGAAGCCCAG AAATTCGACC CCATTGGTTC AAAACTAGGG TTTGAGATTG TCATTAAGCC 421 AATGTTGGGC ATGGTGACTG ATGATGCAGT CGTGGCAGAG AACGAAGAGA AACTCGGGAA 481 ACTTCTTGAT GTGTATGAAT CTAGACTCAA GGAATCGAAA TATTTGGGTG GTGAGAGTTT 541 CACCCTAGCT GAT Predicted gene structure (within gDNA segment 3329 to 1863): Exon 1 3284 3236 ( 49 n); cDNA 203 251 ( 49 n); score: 1.000 Intron 1 3235 2775 ( 461 n); Pd: 0.977 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 2 2774 2473 ( 302 n); cDNA 252 553 ( 302 n); score: 1.000 MATCH C06HBa0024L21.1-5- SGN-E290753+ 1.000 351 0.635 C PGS_C06HBa0024L21.1-5-_SGN-E290753+ (3284 3236,2774 2473) Alignment (genomic DNA sequence = upper lines): CCGTTTGGTC AAGTTCCAGC TTTTGAAGAT GGAGATTTAA AGCTTTTTGG TATGTTTCCC 3225 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| CCGTTTGGTC AAGTTCCAGC TTTTGAAGAT GGAGATTTAA AGCTTTTTG. .......... 251 TTAGGATCAT GATTGGCTAG AGATTGTTAT TTTTTTTTAT GTATAATATA TATATTAATT 3165 .......... .......... .......... .......... .......... .......... 251 TGAACCTCGT AAAATTAGTG GCTCCTCTAG TGGCGGACTC AGAATTTTTG ATAAAAGTAT 3105 .......... .......... .......... .......... .......... .......... 251 GGGTTTATGA TTTATTATAT ATACCTAAAA AATTATTTTA ATCATGCGTA TGTAATATGA 3045 .......... .......... .......... .......... .......... .......... 251 TTTCTCAACA AAGGGGGGTT TGGATGAATC TGGGACTCGT TGACTTAGTG GTTGAGGGTT 2985 .......... .......... .......... .......... .......... .......... 251 TGAAAATTCA ACTTGACCTT ATTTAGACCT CGATTCTCGT TAATCTAAAG ATAGAGAGGT 2925 .......... .......... .......... .......... .......... .......... 251 TGTTTCTAAC AGAGGTTCAG GATATAAGTA CTATGGAATC TTGCTTCAAT TCAATGAAAA 2865 .......... .......... .......... .......... .......... .......... 251 TCATCACATA ATTGATATTG AATTTACTTG AAACACACTT ATTTCTTTGG TTTTACGATG 2805 .......... .......... .......... .......... .......... .......... 251 TTTGATATAT GAATTATTGG GAAACTGCAG AGTCAAGAGC TATTACACAA TACATAGCTC 2745 |||||||||| |||||||||| |||||||||| .......... .......... .......... AGTCAAGAGC TATTACACAA TACATAGCTC 281 ACACATATGC AGACAAAGGG AACCAACTTT TACCCAATGA CCCAAAGAAA ATGGCAGTCA 2685 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACACATATGC AGACAAAGGG AACCAACTTT TACCCAATGA CCCAAAGAAA ATGGCAGTCA 341 TGTCTGTATG GATGGAAGTA GAAGCCCAGA AATTCGACCC CATTGGTTCA AAACTAGGGT 2625 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTCTGTATG GATGGAAGTA GAAGCCCAGA AATTCGACCC CATTGGTTCA AAACTAGGGT 401 TTGAGATTGT CATTAAGCCA ATGTTGGGCA TGGTGACTGA TGATGCAGTC GTGGCAGAGA 2565 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGAGATTGT CATTAAGCCA ATGTTGGGCA TGGTGACTGA TGATGCAGTC GTGGCAGAGA 461 ACGAAGAGAA ACTCGGGAAA CTTCTTGATG TGTATGAATC TAGACTCAAG GAATCGAAAT 2505 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACGAAGAGAA ACTCGGGAAA CTTCTTGATG TGTATGAATC TAGACTCAAG GAATCGAAAT 521 ATTTGGGTGG TGAGAGTTTC ACCCTAGCTG AT 2473 |||||||||| |||||||||| |||||||||| || ATTTGGGTGG TGAGAGTTTC ACCCTAGCTG AT 553 hqPGS_C06HBa0024L21.1-5-_SGN-E290753+ (3284 3236,2774 2473) ******************************************************************************** EST sequence 30 +strand 331 n (File: SGN-E260129+) 1 GTCTAAATCC GTTTGGTCAA GTTCCAGCTT TTGAAGATGG AGATTTAAAG CTTTTTGAGT 61 CAAGAGCTAT TACACAATAC ATAGCTCACA CATATGCAGA CAAAGGGAAC CAACTTTTAC 121 CCAATGACCC AAAGAAAATG GCAGTCATGT CTGTATGGAT GGAAGTAGAA GCCCAGAAAT 181 TCGACCCCAT TGGTTCAAAA CTAGGGTTTG AGATTGTCAT TAAGCCAATG TTGGGCATGG 241 TGACTGATGA TGCAGTCGTG GCAGAGAACG AAGAGAAACT CGGGAAACTT CTTGATGTGT 301 ATGAATCTAG ACTCCAGGAA TCGAAATATT T Predicted gene structure (within gDNA segment 3329 to 1891): Exon 1 3284 3236 ( 49 n); cDNA 9 57 ( 49 n); score: 1.000 Intron 1 3235 2775 ( 461 n); Pd: 0.977 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 2 2774 2501 ( 274 n); cDNA 58 331 ( 274 n); score: 0.996 MATCH C06HBa0024L21.1-5- SGN-E260129+ 0.996 323 0.976 C PGS_C06HBa0024L21.1-5-_SGN-E260129+ (3284 3236,2774 2501) Alignment (genomic DNA sequence = upper lines): CCGTTTGGTC AAGTTCCAGC TTTTGAAGAT GGAGATTTAA AGCTTTTTGG TATGTTTCCC 3225 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| CCGTTTGGTC AAGTTCCAGC TTTTGAAGAT GGAGATTTAA AGCTTTTTG. .......... 57 TTAGGATCAT GATTGGCTAG AGATTGTTAT TTTTTTTTAT GTATAATATA TATATTAATT 3165 .......... .......... .......... .......... .......... .......... 57 TGAACCTCGT AAAATTAGTG GCTCCTCTAG TGGCGGACTC AGAATTTTTG ATAAAAGTAT 3105 .......... .......... .......... .......... .......... .......... 57 GGGTTTATGA TTTATTATAT ATACCTAAAA AATTATTTTA ATCATGCGTA TGTAATATGA 3045 .......... .......... .......... .......... .......... .......... 57 TTTCTCAACA AAGGGGGGTT TGGATGAATC TGGGACTCGT TGACTTAGTG GTTGAGGGTT 2985 .......... .......... .......... .......... .......... .......... 57 TGAAAATTCA ACTTGACCTT ATTTAGACCT CGATTCTCGT TAATCTAAAG ATAGAGAGGT 2925 .......... .......... .......... .......... .......... .......... 57 TGTTTCTAAC AGAGGTTCAG GATATAAGTA CTATGGAATC TTGCTTCAAT TCAATGAAAA 2865 .......... .......... .......... .......... .......... .......... 57 TCATCACATA ATTGATATTG AATTTACTTG AAACACACTT ATTTCTTTGG TTTTACGATG 2805 .......... .......... .......... .......... .......... .......... 57 TTTGATATAT GAATTATTGG GAAACTGCAG AGTCAAGAGC TATTACACAA TACATAGCTC 2745 |||||||||| |||||||||| |||||||||| .......... .......... .......... AGTCAAGAGC TATTACACAA TACATAGCTC 87 ACACATATGC AGACAAAGGG AACCAACTTT TACCCAATGA CCCAAAGAAA ATGGCAGTCA 2685 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACACATATGC AGACAAAGGG AACCAACTTT TACCCAATGA CCCAAAGAAA ATGGCAGTCA 147 TGTCTGTATG GATGGAAGTA GAAGCCCAGA AATTCGACCC CATTGGTTCA AAACTAGGGT 2625 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTCTGTATG GATGGAAGTA GAAGCCCAGA AATTCGACCC CATTGGTTCA AAACTAGGGT 207 TTGAGATTGT CATTAAGCCA ATGTTGGGCA TGGTGACTGA TGATGCAGTC GTGGCAGAGA 2565 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGAGATTGT CATTAAGCCA ATGTTGGGCA TGGTGACTGA TGATGCAGTC GTGGCAGAGA 267 ACGAAGAGAA ACTCGGGAAA CTTCTTGATG TGTATGAATC TAGACTCAAG GAATCGAAAT 2505 |||||||||| |||||||||| |||||||||| |||||||||| ||||||| || |||||||||| ACGAAGAGAA ACTCGGGAAA CTTCTTGATG TGTATGAATC TAGACTCCAG GAATCGAAAT 327 ATTT 2501 |||| ATTT 331 hqPGS_C06HBa0024L21.1-5-_SGN-E260129+ (3284 3236,2774 2501) ******************************************************************************** EST sequence 26 +strand 367 n (File: SGN-E278586+) 1 GAACTTGTTC CTGTTAATAT GCAAGCTGGT GATCACAAAA AGGAACCATT CATTTCTCTA 61 AATCCGTTTG GTCAAGTTCC AGCTTTTGAA GATGGAGATT TAAAGCTTTT TGAGTCAAGA 121 GCTATTACAC AATACATAGC TCACACATAT GCAGACAAAG GGAACCAACT TTTACCCAAT 181 GACCCAAAGA AAATGGCAGT CATGTCTGTA TGGATGGAAG TAGAAGCCCA GAAATTCGAC 241 CCCATTGGTT CAAAACTAGG GTTTGAGATT GTCATTAAGC CAATGTTGGG CATGGCGACT 301 GATGATGCAG TCGTGGCTCA GAACGAAGAG AAACTCGGGA AACTTCTTGA TGTGTATGAA 361 TCTAGAC Predicted gene structure (within gDNA segment 3329 to 1910): Exon 1 3284 3236 ( 49 n); cDNA 64 112 ( 49 n); score: 1.000 Intron 1 3235 2775 ( 461 n); Pd: 0.977 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 2 2774 2520 ( 255 n); cDNA 113 367 ( 255 n); score: 0.988 MATCH C06HBa0024L21.1-5- SGN-E278586+ 0.988 304 0.828 C PGS_C06HBa0024L21.1-5-_SGN-E278586+ (3284 3236,2774 2520) Alignment (genomic DNA sequence = upper lines): CCGTTTGGTC AAGTTCCAGC TTTTGAAGAT GGAGATTTAA AGCTTTTTGG TATGTTTCCC 3225 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| CCGTTTGGTC AAGTTCCAGC TTTTGAAGAT GGAGATTTAA AGCTTTTTG. .......... 112 TTAGGATCAT GATTGGCTAG AGATTGTTAT TTTTTTTTAT GTATAATATA TATATTAATT 3165 .......... .......... .......... .......... .......... .......... 112 TGAACCTCGT AAAATTAGTG GCTCCTCTAG TGGCGGACTC AGAATTTTTG ATAAAAGTAT 3105 .......... .......... .......... .......... .......... .......... 112 GGGTTTATGA TTTATTATAT ATACCTAAAA AATTATTTTA ATCATGCGTA TGTAATATGA 3045 .......... .......... .......... .......... .......... .......... 112 TTTCTCAACA AAGGGGGGTT TGGATGAATC TGGGACTCGT TGACTTAGTG GTTGAGGGTT 2985 .......... .......... .......... .......... .......... .......... 112 TGAAAATTCA ACTTGACCTT ATTTAGACCT CGATTCTCGT TAATCTAAAG ATAGAGAGGT 2925 .......... .......... .......... .......... .......... .......... 112 TGTTTCTAAC AGAGGTTCAG GATATAAGTA CTATGGAATC TTGCTTCAAT TCAATGAAAA 2865 .......... .......... .......... .......... .......... .......... 112 TCATCACATA ATTGATATTG AATTTACTTG AAACACACTT ATTTCTTTGG TTTTACGATG 2805 .......... .......... .......... .......... .......... .......... 112 TTTGATATAT GAATTATTGG GAAACTGCAG AGTCAAGAGC TATTACACAA TACATAGCTC 2745 |||||||||| |||||||||| |||||||||| .......... .......... .......... AGTCAAGAGC TATTACACAA TACATAGCTC 142 ACACATATGC AGACAAAGGG AACCAACTTT TACCCAATGA CCCAAAGAAA ATGGCAGTCA 2685 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACACATATGC AGACAAAGGG AACCAACTTT TACCCAATGA CCCAAAGAAA ATGGCAGTCA 202 TGTCTGTATG GATGGAAGTA GAAGCCCAGA AATTCGACCC CATTGGTTCA AAACTAGGGT 2625 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTCTGTATG GATGGAAGTA GAAGCCCAGA AATTCGACCC CATTGGTTCA AAACTAGGGT 262 TTGAGATTGT CATTAAGCCA ATGTTGGGCA TGGTGACTGA TGATGCAGTC GTGGCAGAGA 2565 |||||||||| |||||||||| |||||||||| ||| |||||| |||||||||| ||||| ||| TTGAGATTGT CATTAAGCCA ATGTTGGGCA TGGCGACTGA TGATGCAGTC GTGGCTCAGA 322 ACGAAGAGAA ACTCGGGAAA CTTCTTGATG TGTATGAATC TAGAC 2520 |||||||||| |||||||||| |||||||||| |||||||||| ||||| ACGAAGAGAA ACTCGGGAAA CTTCTTGATG TGTATGAATC TAGAC 367 hqPGS_C06HBa0024L21.1-5-_SGN-E278586+ (3284 3236,2774 2520) ******************************************************************************** EST sequence 3 -strand 397 n (File: SGN-E285787-) 1 AGGGGGACCA ATAGTTGGAA ATGGCTGCTA ATCCCTCGTA GACTGAGGAG CAAAATATGG 61 CCTATGTATT ACTAGTAGGT TAATAAATAT AGGCCCCAAG TAACCCTCCT TTTGGAACCT 121 TTTTGCTTTG GGGGGGGCTC TTTTTTTTCC TTCCTATCCT TCATCCTTGT TTGTAAGTCA 181 AGTGTTTGTT GTATCGTAAA ACGTTCTCTT TTTATTGAAT TTTTTGGGGG GGGGTATGGG 241 TAAACCCACT TGTACTTTTT TGAACCTCCA TTGCCCTTTC ATTTTGTGCC TTGTATAGGT 301 CATAAAATAA GTGTTTCCCC TTACCAAAAA AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA 361 AAAAAAAAAA AAAAAAAAAA ACTCGAGACT AGTTCTC Predicted gene structure (within gDNA segment 2973 to 566): Exon 1 2291 1965 ( 327 n); cDNA 1 327 ( 327 n); score: 0.930 PPA cDNA 347 382 MATCH C06HBa0024L21.1-5- SGN-E285787- 0.930 327 0.824 C PGS_C06HBa0024L21.1-5-_SGN-E285787- (2291 1965) Alignment (genomic DNA sequence = upper lines): AGGGGGAACA ATAGTTGGAA ATGGCTGCTA ATACCTCGTA GACTGAGGAG CAAAATATGG 2232 ||||||| || |||||||||| |||||||||| || ||||||| |||||||||| |||||||||| AGGGGGACCA ATAGTTGGAA ATGGCTGCTA ATCCCTCGTA GACTGAGGAG CAAAATATGG 60 CCTATGTATT ACTAGTAGGT TAATAAATAT AGGCCACAAG TAACACTCCT TTTGTAACCT 2172 |||||||||| |||||||||| |||||||||| ||||| |||| |||| ||||| |||| ||||| CCTATGTATT ACTAGTAGGT TAATAAATAT AGGCCCCAAG TAACCCTCCT TTTGGAACCT 120 TTTTGCTTTG TGGTGTGCTC TTTTTTTTCC TTCCTATCCT TCATCCTTGT CTGTGAGTCA 2112 |||||||||| || | |||| |||||||||| |||||||||| |||||||||| ||| ||||| TTTTGCTTTG GGGGGGGCTC TTTTTTTTCC TTCCTATCCT TCATCCTTGT TTGTAAGTCA 180 AGTGTTTGTT GTATCGTAAG ACGTTCTCTT TTTATTGAAT TTTTTGTGTG CGCGTATGCG 2052 |||||||||| ||||||||| |||||||||| |||||||||| |||||| | | | ||||| | AGTGTTTGTT GTATCGTAAA ACGTTCTCTT TTTATTGAAT TTTTTGGGGG GGGGTATGGG 240 TAAGCCGACT TGTACTTTTT TGAACCTACA TTGCACTTTC ATTTTGTGCC TTGTATAGGT 1992 ||| || ||| |||||||||| ||||||| || |||| ||||| |||||||||| |||||||||| TAAACCCACT TGTACTTTTT TGAACCTCCA TTGCCCTTTC ATTTTGTGCC TTGTATAGGT 300 CATAAAATAA GTGTTTACCA TTAACAA 1965 |||||||||| |||||| || ||| ||| CATAAAATAA GTGTTTCCCC TTACCAA 327 hqPGS_C06HBa0024L21.1-5-_SGN-E285787- (2291 1965) ******************************************************************************** EST sequence 31 +strand 284 n (File: SGN-E292812+) 1 TAGACTGAGG AGCAAAATAT GGCCTATGTA TTACTAGTAG GTTAATAAAT ATAGGCCACA 61 AGTAACACTC CTTTTGTAAC CTTTTTGCTT TGTGGTGTGC TCTTTTTTTT CCTTCCTATC 121 CTTCATCCTT GTCTGTGAGT CAAGTGTTTG TTGTATCGTA AGACGTTCTC TTTTTATTGA 181 ATTTTTTGTG TGCGCGTATG CGTAAGCCGA CTTGTACTTT TTTGAACCTA CATTGCACTT 241 TCATTTTGTG CCTTGTATAG GTCATAAAAT AAGTGTTTAC CATT Predicted gene structure (within gDNA segment 2853 to 1360): Exon 1 2253 1970 ( 284 n); cDNA 1 284 ( 284 n); score: 1.000 MATCH C06HBa0024L21.1-5- SGN-E292812+ 1.000 284 1.000 C PGS_C06HBa0024L21.1-5-_SGN-E292812+ (2253 1970) Alignment (genomic DNA sequence = upper lines): TAGACTGAGG AGCAAAATAT GGCCTATGTA TTACTAGTAG GTTAATAAAT ATAGGCCACA 2194 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAGACTGAGG AGCAAAATAT GGCCTATGTA TTACTAGTAG GTTAATAAAT ATAGGCCACA 60 AGTAACACTC CTTTTGTAAC CTTTTTGCTT TGTGGTGTGC TCTTTTTTTT CCTTCCTATC 2134 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTAACACTC CTTTTGTAAC CTTTTTGCTT TGTGGTGTGC TCTTTTTTTT CCTTCCTATC 120 CTTCATCCTT GTCTGTGAGT CAAGTGTTTG TTGTATCGTA AGACGTTCTC TTTTTATTGA 2074 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTCATCCTT GTCTGTGAGT CAAGTGTTTG TTGTATCGTA AGACGTTCTC TTTTTATTGA 180 ATTTTTTGTG TGCGCGTATG CGTAAGCCGA CTTGTACTTT TTTGAACCTA CATTGCACTT 2014 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTTTTTGTG TGCGCGTATG CGTAAGCCGA CTTGTACTTT TTTGAACCTA CATTGCACTT 240 TCATTTTGTG CCTTGTATAG GTCATAAAAT AAGTGTTTAC CATT 1970 |||||||||| |||||||||| |||||||||| |||||||||| |||| TCATTTTGTG CCTTGTATAG GTCATAAAAT AAGTGTTTAC CATT 284 hqPGS_C06HBa0024L21.1-5-_SGN-E292812+ (2253 1970) ******************************************************************************** EST sequence 16 +strand 437 n (File: SGN-E336726+) 1 TCACATCTCA CACACAAATT TCATTTTCTA CTTTCACTTT CTCTCTCTAG AAAACAAAAA 61 TGGCGATCAA GGTTCATGGC CCTATGATGT CCCCTGCTGT TATGAGAGTC GTAGCTACAC 121 TCAAAGAGAA AGATCTTGAT TTTGAACTTG TTCCTGTTAA TATGCAAGCT GGTGATCACA 181 AAAAGGAACC ATTCATTTCT CTAAATCCGT TTGGTCAAGT TCCAGCTTTT GAAGATGGAG 241 ATTTAAAGCT TTTTGAGTCA AGAGCTATTA CACAATACAT AGCTCACACA TATGCAGACA 301 AAGGGAACCA ACTTTTACCC AATGACCCAA AGAAAATGGC AGTCATGTCT GTATGGATGG 361 AAGTAGAAGC CCAGAAATTC GACCCCATTG GTTCAAAACT AGGGTTTGAG ATTGTCATTA 421 AGCCAATGTT GGGCATG Predicted gene structure (within gDNA segment 3329 to 1983): Exon 1 3284 3236 ( 49 n); cDNA 207 255 ( 49 n); score: 1.000 Intron 1 3235 2775 ( 461 n); Pd: 0.977 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 2 2774 2593 ( 182 n); cDNA 256 437 ( 182 n); score: 1.000 MATCH C06HBa0024L21.1-5- SGN-E336726+ 1.000 231 0.529 C PGS_C06HBa0024L21.1-5-_SGN-E336726+ (3284 3236,2774 2593) Alignment (genomic DNA sequence = upper lines): CCGTTTGGTC AAGTTCCAGC TTTTGAAGAT GGAGATTTAA AGCTTTTTGG TATGTTTCCC 3225 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| CCGTTTGGTC AAGTTCCAGC TTTTGAAGAT GGAGATTTAA AGCTTTTTG. .......... 255 TTAGGATCAT GATTGGCTAG AGATTGTTAT TTTTTTTTAT GTATAATATA TATATTAATT 3165 .......... .......... .......... .......... .......... .......... 255 TGAACCTCGT AAAATTAGTG GCTCCTCTAG TGGCGGACTC AGAATTTTTG ATAAAAGTAT 3105 .......... .......... .......... .......... .......... .......... 255 GGGTTTATGA TTTATTATAT ATACCTAAAA AATTATTTTA ATCATGCGTA TGTAATATGA 3045 .......... .......... .......... .......... .......... .......... 255 TTTCTCAACA AAGGGGGGTT TGGATGAATC TGGGACTCGT TGACTTAGTG GTTGAGGGTT 2985 .......... .......... .......... .......... .......... .......... 255 TGAAAATTCA ACTTGACCTT ATTTAGACCT CGATTCTCGT TAATCTAAAG ATAGAGAGGT 2925 .......... .......... .......... .......... .......... .......... 255 TGTTTCTAAC AGAGGTTCAG GATATAAGTA CTATGGAATC TTGCTTCAAT TCAATGAAAA 2865 .......... .......... .......... .......... .......... .......... 255 TCATCACATA ATTGATATTG AATTTACTTG AAACACACTT ATTTCTTTGG TTTTACGATG 2805 .......... .......... .......... .......... .......... .......... 255 TTTGATATAT GAATTATTGG GAAACTGCAG AGTCAAGAGC TATTACACAA TACATAGCTC 2745 |||||||||| |||||||||| |||||||||| .......... .......... .......... AGTCAAGAGC TATTACACAA TACATAGCTC 285 ACACATATGC AGACAAAGGG AACCAACTTT TACCCAATGA CCCAAAGAAA ATGGCAGTCA 2685 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACACATATGC AGACAAAGGG AACCAACTTT TACCCAATGA CCCAAAGAAA ATGGCAGTCA 345 TGTCTGTATG GATGGAAGTA GAAGCCCAGA AATTCGACCC CATTGGTTCA AAACTAGGGT 2625 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTCTGTATG GATGGAAGTA GAAGCCCAGA AATTCGACCC CATTGGTTCA AAACTAGGGT 405 TTGAGATTGT CATTAAGCCA ATGTTGGGCA TG 2593 |||||||||| |||||||||| |||||||||| || TTGAGATTGT CATTAAGCCA ATGTTGGGCA TG 437 hqPGS_C06HBa0024L21.1-5-_SGN-E336726+ (3284 3236,2774 2593) ******************************************************************************** EST sequence 12 +strand 173 n (File: SGN-E263831+) 1 CATTCATTTC TCTAAATCCG TTTGGTCAAG TTCCAGCTTT TGAAGATGGA GATTTAAAGC 61 TTTTTGAGTC AAGAGCTATT ACACAATACA TAGCTCACAC ATATGCAGAC AAAGGGAACC 121 AACTTTTACC CAATGACCCA AAGAAAATGG CAGTCATGTC TGTATGGATG GAA Predicted gene structure (within gDNA segment 3329 to 2058): Exon 1 3284 3236 ( 49 n); cDNA 18 66 ( 49 n); score: 1.000 Intron 1 3235 2775 ( 461 n); Pd: 0.977 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 2 2774 2668 ( 107 n); cDNA 67 173 ( 107 n); score: 1.000 MATCH C06HBa0024L21.1-5- SGN-E263831+ 1.000 156 0.902 C PGS_C06HBa0024L21.1-5-_SGN-E263831+ (3284 3236,2774 2668) Alignment (genomic DNA sequence = upper lines): CCGTTTGGTC AAGTTCCAGC TTTTGAAGAT GGAGATTTAA AGCTTTTTGG TATGTTTCCC 3225 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| CCGTTTGGTC AAGTTCCAGC TTTTGAAGAT GGAGATTTAA AGCTTTTTG. .......... 66 TTAGGATCAT GATTGGCTAG AGATTGTTAT TTTTTTTTAT GTATAATATA TATATTAATT 3165 .......... .......... .......... .......... .......... .......... 66 TGAACCTCGT AAAATTAGTG GCTCCTCTAG TGGCGGACTC AGAATTTTTG ATAAAAGTAT 3105 .......... .......... .......... .......... .......... .......... 66 GGGTTTATGA TTTATTATAT ATACCTAAAA AATTATTTTA ATCATGCGTA TGTAATATGA 3045 .......... .......... .......... .......... .......... .......... 66 TTTCTCAACA AAGGGGGGTT TGGATGAATC TGGGACTCGT TGACTTAGTG GTTGAGGGTT 2985 .......... .......... .......... .......... .......... .......... 66 TGAAAATTCA ACTTGACCTT ATTTAGACCT CGATTCTCGT TAATCTAAAG ATAGAGAGGT 2925 .......... .......... .......... .......... .......... .......... 66 TGTTTCTAAC AGAGGTTCAG GATATAAGTA CTATGGAATC TTGCTTCAAT TCAATGAAAA 2865 .......... .......... .......... .......... .......... .......... 66 TCATCACATA ATTGATATTG AATTTACTTG AAACACACTT ATTTCTTTGG TTTTACGATG 2805 .......... .......... .......... .......... .......... .......... 66 TTTGATATAT GAATTATTGG GAAACTGCAG AGTCAAGAGC TATTACACAA TACATAGCTC 2745 |||||||||| |||||||||| |||||||||| .......... .......... .......... AGTCAAGAGC TATTACACAA TACATAGCTC 96 ACACATATGC AGACAAAGGG AACCAACTTT TACCCAATGA CCCAAAGAAA ATGGCAGTCA 2685 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACACATATGC AGACAAAGGG AACCAACTTT TACCCAATGA CCCAAAGAAA ATGGCAGTCA 156 TGTCTGTATG GATGGAA 2668 |||||||||| ||||||| TGTCTGTATG GATGGAA 173 hqPGS_C06HBa0024L21.1-5-_SGN-E263831+ (3284 3236,2774 2668) ******************************************************************************** EST sequence 6 +strand 458 n (File: SGN-E285304+) 1 TTCGATGCTA GGCCTCATGT TAGCGCTTGG GTTGCTGATA TTTTGGCTTG GCCAGCTTGG 61 TCTAAGACAA TTGAGTTGTC GAAACAGTAA GTTTAGTGGC GGATGGGTGA GTATCGCGTA 121 GAAAGGAAGG GGGAACAGTA GTTGGAAATG GCTGCTAATA CCTCCTAGAC TGAGGAGCAA 181 AATATGGCCT ATGTATTACT AGTAGGTTAA TAAATATAGG CCACAAGTAA CACTCCGTTT 241 TGTAACCTTT TTGCTTTGTG GTGTGCTCTT TTTCTTTCCT TCCTATCCTT CATCCTTGTC 301 TGTGAGTCAA GTGTTTGTTG TATCGTAAGA CGTTCTCTTT TTATTGAATT TTTTGTGTGC 361 GCGTATGCCT AAGCCGACTT GTACTTTTGT GAACCTACAT TGCACTGTTA TTTCGTGCCT 421 TGTATAGGTC ATAAAATAAG TGTTTACCAT TAAAAAAA Predicted gene structure (within gDNA segment 3018 to 1308): Exon 1 2418 1964 ( 455 n); cDNA 1 457 ( 457 n); score: 0.965 MATCH C06HBa0024L21.1-5- SGN-E285304+ 0.965 455 0.993 C PGS_C06HBa0024L21.1-5-_SGN-E285304+ (2418 1964) Alignment (genomic DNA sequence = upper lines): TTCGATGCTA GGCCTCATGT TAGCGCTTGG GTTGCTGATA TTTTGGCTAG GCCAGCTTGG 2359 |||||||||| |||||||||| |||||||||| |||||||||| |||||||| | |||||||||| TTCGATGCTA GGCCTCATGT TAGCGCTTGG GTTGCTGATA TTTTGGCTTG GCCAGCTTGG 60 TCTAAGACAA TTGAGTTGTC AAAACAGTAA GTTTAGTGGC GGATGGGTGA GTATCGCGTT 2299 |||||||||| |||||||||| ||||||||| |||||||||| |||||||||| ||||||||| TCTAAGACAA TTGAGTTGTC GAAACAGTAA GTTTAGTGGC GGATGGGTGA GTATCGCGTA 120 GAAAGGAAGG GGGAACAATA GTTGGAAATG GCTGCTAATA CCTCGTAGAC TGAGGAGCAA 2239 |||||||||| ||||||| || |||||||||| |||||||||| |||| ||||| |||||||||| GAAAGGAAGG GGGAACAGTA GTTGGAAATG GCTGCTAATA CCTCCTAGAC TGAGGAGCAA 180 AATATGGCCT ATGTATTACT AGTAGGTTAA TAAATATAGG CCACAAGTAA CACTCC-TTT 2180 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||| ||| AATATGGCCT ATGTATTACT AGTAGGTTAA TAAATATAGG CCACAAGTAA CACTCCGTTT 240 TGTAACCTTT TTGCTTTGTG GTGTGCTCTT TTT-TTTCCT TCCTATCCTT CATCCTTGTC 2121 |||||||||| |||||||||| |||||||||| ||| |||||| |||||||||| |||||||||| TGTAACCTTT TTGCTTTGTG GTGTGCTCTT TTTCTTTCCT TCCTATCCTT CATCCTTGTC 300 TGTGAGTCAA GTGTTTGTTG TATCGTAAGA CGTTCTCTTT TTATTGAATT TTTTGTGTGC 2061 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTGAGTCAA GTGTTTGTTG TATCGTAAGA CGTTCTCTTT TTATTGAATT TTTTGTGTGC 360 GCGTATGCGT AAGCCGACTT GTACTTTTTT GAACCTACAT TGCACTTTCA TTTTGTGCCT 2001 |||||||| | |||||||||| |||||||| | |||||||||| |||||| | | ||| |||||| GCGTATGCCT AAGCCGACTT GTACTTTTGT GAACCTACAT TGCACTGTTA TTTCGTGCCT 420 TGTATAGGTC ATAAAATAAG TGTTTACCAT TAACAAA 1964 |||||||||| |||||||||| |||||||||| ||| ||| TGTATAGGTC ATAAAATAAG TGTTTACCAT TAAAAAA 457 hqPGS_C06HBa0024L21.1-5-_SGN-E285304+ (2418 1964) ******************************************************************************** EST sequence 5 +strand 492 n (File: SGN-E371753+) 1 CTGATTTGCA CCACGCCCCG TCTTTGCACT ACTTGTCGGG GAGTAAAGTG AATAGCTTGC 61 TCGATGCTAC GCCTCATGTT AGCGCTTGGG TTGCTGATAT TTTGGCTAGG CCACCTTGGT 121 CTAAGACAAT TGAGTTGTCA AATCAGTAAG TTTATTGGCG GATGGGTGAG TATCGCGTAG 181 AAAGGAAGGG GGAACAATAT TTGGAAATGG CTGCTAATAC CTCGTAGACT GAGGAGCAAA 241 ATATGGCCTA TGTATTACTA GTAGGTTAAT AAATATAGGC CACAAGTAAC ACTCCTTTTG 301 TAACCTTTTT GCTTTGTGGT GTGCTCTTTT TTTTTCTTCC TATCCTTCAT CCTTGTCTGT 361 GAGTCAAGTG TTTGTTGTAT CGTAAGACGT TCTCTTTTTA TTGAATTTTT TGTGTGCGCG 421 TATGCGTAAG CCGACTTGTA CTTTTTTGAA CCTACATTGC ACTTTCATTT TGTGCCTTGT 481 ATAGGTCATA AA Predicted gene structure (within gDNA segment 3077 to 1376): Exon 1 2477 1986 ( 492 n); cDNA 1 492 ( 492 n); score: 0.982 MATCH C06HBa0024L21.1-5- SGN-E371753+ 0.982 492 1.000 C PGS_C06HBa0024L21.1-5-_SGN-E371753+ (2477 1986) Alignment (genomic DNA sequence = upper lines): CTGATTTGCA CCACGCCCCG TCTTTGCACT ACTTGTCGGG GAGTAAAGTG AAGAGCTTGT 2418 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| || |||||| CTGATTTGCA CCACGCCCCG TCTTTGCACT ACTTGTCGGG GAGTAAAGTG AATAGCTTGC 60 TCGATGCTAG GCCTCATGTT AGCGCTTGGG TTGCTGATAT TTTGGCTAGG CCAGCTTGGT 2358 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||| |||||| TCGATGCTAC GCCTCATGTT AGCGCTTGGG TTGCTGATAT TTTGGCTAGG CCACCTTGGT 120 CTAAGACAAT TGAGTTGTCA AAACAGTAAG TTTAGTGGCG GATGGGTGAG TATCGCGTTG 2298 |||||||||| |||||||||| || ||||||| |||| ||||| |||||||||| |||||||| | CTAAGACAAT TGAGTTGTCA AATCAGTAAG TTTATTGGCG GATGGGTGAG TATCGCGTAG 180 AAAGGAAGGG GGAACAATAG TTGGAAATGG CTGCTAATAC CTCGTAGACT GAGGAGCAAA 2238 |||||||||| ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAGGAAGGG GGAACAATAT TTGGAAATGG CTGCTAATAC CTCGTAGACT GAGGAGCAAA 240 ATATGGCCTA TGTATTACTA GTAGGTTAAT AAATATAGGC CACAAGTAAC ACTCCTTTTG 2178 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATATGGCCTA TGTATTACTA GTAGGTTAAT AAATATAGGC CACAAGTAAC ACTCCTTTTG 300 TAACCTTTTT GCTTTGTGGT GTGCTCTTTT TTTTCCTTCC TATCCTTCAT CCTTGTCTGT 2118 |||||||||| |||||||||| |||||||||| |||| ||||| |||||||||| |||||||||| TAACCTTTTT GCTTTGTGGT GTGCTCTTTT TTTTTCTTCC TATCCTTCAT CCTTGTCTGT 360 GAGTCAAGTG TTTGTTGTAT CGTAAGACGT TCTCTTTTTA TTGAATTTTT TGTGTGCGCG 2058 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGTCAAGTG TTTGTTGTAT CGTAAGACGT TCTCTTTTTA TTGAATTTTT TGTGTGCGCG 420 TATGCGTAAG CCGACTTGTA CTTTTTTGAA CCTACATTGC ACTTTCATTT TGTGCCTTGT 1998 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATGCGTAAG CCGACTTGTA CTTTTTTGAA CCTACATTGC ACTTTCATTT TGTGCCTTGT 480 ATAGGTCATA AA 1986 |||||||||| || ATAGGTCATA AA 492 hqPGS_C06HBa0024L21.1-5-_SGN-E371753+ (2477 1986) ******************************************************************************** EST sequence 8 +strand 741 n (File: SGN-E212661+) 1 AGATTTAAAG CTTTTTGAGT CAAGAGCTAT TACACAATAC ATAGCTCACA CATATGCAGA 61 CAAAGGGAAC CAACTTTTAC CCAATGACCC AAAGAAAATG GCAGTCATGT CTGTATGGAT 121 GGAAGTAGAA GCCCAGAAAT TCGACCCCAT TGGTTCAAAA CTAGGGTTTG AGATTGTCAT 181 TAAGCCAATG TTGGGCATGG TGACTGATGA TGCAGTCGTG GCAGAGAACG AAGAGAAACT 241 CGGGAAACTT CTTGATGTGT ATGAATCTAG ACTCAAGGAA TCGAAATATT TGGGTGGTGA 301 GAGTTTCACC CTAGCTGATT TGCACCACGC CCCGTCTTTG CACTACTTGT CGGGGAGTAA 361 AGTGAAGAGC TTGTTCGATG CTAGGCCTCA TGTTAGCGCT TGGGTTGCTG ATATTTTGGC 421 TAGGCCAGCT TGGTCTAAGA CAATTGAGTT GTCAAAACAG TAAGTTTAGT GGCGGATGGG 481 TGAGTATCGC GTTGAAAGGA AGGGGGAACA ATAGTTGGAA ATGGCTGCTA ATACCTCGTA 541 GACTGANGAG CAAAATATGG CCTATGTATT ACTAGTAGGT TAATAAATAT AGGCCACAAG 601 TAACACTCCT TTTGTAACCT TTTTGCTTTG TGGTGTGCTC TTTTTTTTCC TTCCTATCCT 661 TCATCCTTGT CTGTGAGTCA AGTGTTTGTT GTATCGTAAG ACGTTCTCTT TTTATTGAAT 721 TTTTGTGTGC GCGTATGCGT A Predicted gene structure (within gDNA segment 3329 to 1440): Exon 1 3252 3236 ( 17 n); cDNA 1 17 ( 17 n); score: 1.000 Intron 1 3235 2775 ( 461 n); Pd: 0.977 (s: 0), Pa: 0.998 (s: 1.00) Exon 2 2774 2050 ( 725 n); cDNA 18 741 ( 724 n); score: 0.997 MATCH C06HBa0024L21.1-5- SGN-E212661+ 0.997 742 1.001 C PGS_C06HBa0024L21.1-5-_SGN-E212661+ (3252 3236,2774 2050) Alignment (genomic DNA sequence = upper lines): AGATTTAAAG CTTTTTGGTA TGTTTCCCTT AGGATCATGA TTGGCTAGAG ATTGTTATTT 3193 |||||||||| ||||||| AGATTTAAAG CTTTTTG... .......... .......... .......... .......... 17 TTTTTTATGT ATAATATATA TATTAATTTG AACCTCGTAA AATTAGTGGC TCCTCTAGTG 3133 .......... .......... .......... .......... .......... .......... 17 GCGGACTCAG AATTTTTGAT AAAAGTATGG GTTTATGATT TATTATATAT ACCTAAAAAA 3073 .......... .......... .......... .......... .......... .......... 17 TTATTTTAAT CATGCGTATG TAATATGATT TCTCAACAAA GGGGGGTTTG GATGAATCTG 3013 .......... .......... .......... .......... .......... .......... 17 GGACTCGTTG ACTTAGTGGT TGAGGGTTTG AAAATTCAAC TTGACCTTAT TTAGACCTCG 2953 .......... .......... .......... .......... .......... .......... 17 ATTCTCGTTA ATCTAAAGAT AGAGAGGTTG TTTCTAACAG AGGTTCAGGA TATAAGTACT 2893 .......... .......... .......... .......... .......... .......... 17 ATGGAATCTT GCTTCAATTC AATGAAAATC ATCACATAAT TGATATTGAA TTTACTTGAA 2833 .......... .......... .......... .......... .......... .......... 17 ACACACTTAT TTCTTTGGTT TTACGATGTT TGATATATGA ATTATTGGGA AACTGCAGAG 2773 || .......... .......... .......... .......... .......... ........AG 19 TCAAGAGCTA TTACACAATA CATAGCTCAC ACATATGCAG ACAAAGGGAA CCAACTTTTA 2713 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCAAGAGCTA TTACACAATA CATAGCTCAC ACATATGCAG ACAAAGGGAA CCAACTTTTA 79 CCCAATGACC CAAAGAAAAT GGCAGTCATG TCTGTATGGA TGGAAGTAGA AGCCCAGAAA 2653 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCCAATGACC CAAAGAAAAT GGCAGTCATG TCTGTATGGA TGGAAGTAGA AGCCCAGAAA 139 TTCGACCCCA TTGGTTCAAA ACTAGGGTTT GAGATTGTCA TTAAGCCAAT GTTGGGCATG 2593 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCGACCCCA TTGGTTCAAA ACTAGGGTTT GAGATTGTCA TTAAGCCAAT GTTGGGCATG 199 GTGACTGATG ATGCAGTCGT GGCAGAGAAC GAAGAGAAAC TCGGGAAACT TCTTGATGTG 2533 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGACTGATG ATGCAGTCGT GGCAGAGAAC GAAGAGAAAC TCGGGAAACT TCTTGATGTG 259 TATGAATCTA GACTCAAGGA ATCGAAATAT TTGGGTGGTG AGAGTTTCAC CCTAGCTGAT 2473 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATGAATCTA GACTCAAGGA ATCGAAATAT TTGGGTGGTG AGAGTTTCAC CCTAGCTGAT 319 TTGCACCACG CCCCGTCTTT GCACTACTTG TCGGGGAGTA AAGTGAAGAG CTTGTTCGAT 2413 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGCACCACG CCCCGTCTTT GCACTACTTG TCGGGGAGTA AAGTGAAGAG CTTGTTCGAT 379 GCTAGGCCTC ATGTTAGCGC TTGGGTTGCT GATATTTTGG CTAGGCCAGC TTGGTCTAAG 2353 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTAGGCCTC ATGTTAGCGC TTGGGTTGCT GATATTTTGG CTAGGCCAGC TTGGTCTAAG 439 ACAATTGAGT TGTCAAAACA GTAAGTTTAG TGGCGGATGG GTGAGTATCG CGTTGAAAGG 2293 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACAATTGAGT TGTCAAAACA GTAAGTTTAG TGGCGGATGG GTGAGTATCG CGTTGAAAGG 499 AAGGGGGAAC AATAGTTGGA AATGGCTGCT AATACCTCGT AGACTGAGGA GCAAAATATG 2233 |||||||||| |||||||||| |||||||||| |||||||||| ||||||| || |||||||||| AAGGGGGAAC AATAGTTGGA AATGGCTGCT AATACCTCGT AGACTGANGA GCAAAATATG 559 GCCTATGTAT TACTAGTAGG TTAATAAATA TAGGCCACAA GTAACACTCC TTTTGTAACC 2173 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCCTATGTAT TACTAGTAGG TTAATAAATA TAGGCCACAA GTAACACTCC TTTTGTAACC 619 TTTTTGCTTT GTGGTGTGCT CTTTTTTTTC CTTCCTATCC TTCATCCTTG TCTGTGAGTC 2113 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTTTGCTTT GTGGTGTGCT CTTTTTTTTC CTTCCTATCC TTCATCCTTG TCTGTGAGTC 679 AAGTGTTTGT TGTATCGTAA GACGTTCTCT TTTTATTGAA TTTTTTGTGT GCGCGTATGC 2053 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| |||||||||| AAGTGTTTGT TGTATCGTAA GACGTTCTCT TTTTATTGAA -TTTTTGTGT GCGCGTATGC 738 GTA 2050 ||| GTA 741 hqPGS_C06HBa0024L21.1-5-_SGN-E212661+ (2774 2050) ******************************************************************************** EST sequence 2 -strand 501 n (File: SGN-E266436-) 1 CTAGACTCAA GGAATCGAAA TATTTGGGTG GTGAGAGTTT CACCCTAGAT GATTTGCACC 61 ACGCCCCGTC TTTGCACTAC TTGTCGGGGA GTAAAGTGAA GAGCTTGTTC GATGCTAGGC 121 CTCATGTTAG CGCTTGGGTT GCTGATATTT TGGCTAGGCC AGCTTGGTTT AAGACAATTG 181 AGTTGTCAAA ACAGTAAGTT TAGTGGCGGA TGGGTGAGTA TCGCGTTTAA AGGAAGGGGG 241 AACAATAGTT GGAAATGGCT GCTAATACCT CGTAGACTGA GGAGCCATAT ATGGCCTATG 301 TATTGCTAGT AGGTTAATAA ATATAGGCCA CAAGTAACAC TCCTTTTGTA ACCTTTTTGC 361 TTTGCGGTGT GCTCTTTTTT TTCCTTCCTA TCCTTCATCC TTGTCTGTGA GTCAAGTGTT 421 TGTTGTATCG TTAGACGTTC TCTTTCTATT GAATTTTTTG TGTCAAAAAC CAAAAAAAAA 481 AAAAATAAAA AAAACTCGAG A Predicted gene structure (within gDNA segment 3135 to 1083): Exon 1 2525 2063 ( 463 n); cDNA 1 463 ( 463 n); score: 0.981 PPA cDNA 472 494 MATCH C06HBa0024L21.1-5- SGN-E266436- 0.981 463 0.924 C PGS_C06HBa0024L21.1-5-_SGN-E266436- (2525 2063) Alignment (genomic DNA sequence = upper lines): CTAGACTCAA GGAATCGAAA TATTTGGGTG GTGAGAGTTT CACCCTAGCT GATTTGCACC 2466 |||||||||| |||||||||| |||||||||| |||||||||| |||||||| | |||||||||| CTAGACTCAA GGAATCGAAA TATTTGGGTG GTGAGAGTTT CACCCTAGAT GATTTGCACC 60 ACGCCCCGTC TTTGCACTAC TTGTCGGGGA GTAAAGTGAA GAGCTTGTTC GATGCTAGGC 2406 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACGCCCCGTC TTTGCACTAC TTGTCGGGGA GTAAAGTGAA GAGCTTGTTC GATGCTAGGC 120 CTCATGTTAG CGCTTGGGTT GCTGATATTT TGGCTAGGCC AGCTTGGTCT AAGACAATTG 2346 |||||||||| |||||||||| |||||||||| |||||||||| |||||||| | |||||||||| CTCATGTTAG CGCTTGGGTT GCTGATATTT TGGCTAGGCC AGCTTGGTTT AAGACAATTG 180 AGTTGTCAAA ACAGTAAGTT TAGTGGCGGA TGGGTGAGTA TCGCGTTGAA AGGAAGGGGG 2286 |||||||||| |||||||||| |||||||||| |||||||||| ||||||| || |||||||||| AGTTGTCAAA ACAGTAAGTT TAGTGGCGGA TGGGTGAGTA TCGCGTTTAA AGGAAGGGGG 240 AACAATAGTT GGAAATGGCT GCTAATACCT CGTAGACTGA GGAGCAAAAT ATGGCCTATG 2226 |||||||||| |||||||||| |||||||||| |||||||||| ||||| | || |||||||||| AACAATAGTT GGAAATGGCT GCTAATACCT CGTAGACTGA GGAGCCATAT ATGGCCTATG 300 TATTACTAGT AGGTTAATAA ATATAGGCCA CAAGTAACAC TCCTTTTGTA ACCTTTTTGC 2166 |||| ||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATTGCTAGT AGGTTAATAA ATATAGGCCA CAAGTAACAC TCCTTTTGTA ACCTTTTTGC 360 TTTGTGGTGT GCTCTTTTTT TTCCTTCCTA TCCTTCATCC TTGTCTGTGA GTCAAGTGTT 2106 |||| ||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTGCGGTGT GCTCTTTTTT TTCCTTCCTA TCCTTCATCC TTGTCTGTGA GTCAAGTGTT 420 TGTTGTATCG TAAGACGTTC TCTTTTTATT GAATTTTTTG TGT 2063 |||||||||| | |||||||| ||||| |||| |||||||||| ||| TGTTGTATCG TTAGACGTTC TCTTTCTATT GAATTTTTTG TGT 463 hqPGS_C06HBa0024L21.1-5-_SGN-E266436- (2525 2063) Total number of EST alignments reported: 33 ________________________________________________________________________________ Predicted gene locations (1) in segment 1 to 3329: PGL 1 (- strand): 3284 1058 AGS-1 (1731 1058) SCR (e 0.998) Exon 1 1731 1058 ( 674 n); score: 0.998 PGS (1728 1058) SGN-E389536- PGS (1731 1084) SGN-E389796+ PGS (1730 1103) SGN-E375129+ PGS (1730 1133) SGN-E231883+ PGS (1731 1288) SGN-E240977+ PGS (1730 1295) SGN-E376972+ PGS (1731 1454) SGN-E550317+ 3-phase translation of AGS-1 (-strand): . . . . . . 1731 ACAATATCAGTTTCATATTATGGGTGAAGTGCACGCGCTCTACTAAGTAAAATCTCAGTT T I S V S Y Y G - S A R A L L S K I S V Q Y Q F H I M G E V H A L Y - V K S Q F N I S F I L W V K C T R S T K - N L S . . . . . . 1671 TCATATTGATGACATGTCATATAATTATTTTTTTATTTTTTTTACTTTTCCACATCTTTT S Y - - H V I - L F F Y F F Y F S T S F H I D D M S Y N Y F F I F F T F P H L L F I L M T C H I I I F L F F L L F H I F . . . . . . 1611 AAATAATTTATTTTTCACTCTTCACCTATGCTCTTCATTTCACTTGGGTCAATTTCTTAA K - F I F H S S P M L F I S L G S I S - N N L F F T L H L C S S F H L G Q F L K - I I Y F S L F T Y A L H F T W V N F L . . . . . . 1551 GATTCAAAATTTAATATTGATTGATTCCTTTTATTTTTTATTATTTTGTAATTATTTACT D S K F N I D - F L L F F I I L - L F T I Q N L I L I D S F Y F L L F C N Y L L R F K I - Y - L I P F I F Y Y F V I I Y . . . . . . 1491 ATTACTTCCATCAATACTTATATCAGTCACCATATTTTTTTTCCCAACTAGATGAAACTA I T S I N T Y I S H H I F F P N - M K L L L P S I L I S V T I F F F P T R - N Y Y Y F H Q Y L Y Q S P Y F F S Q L D E T . . . . . . 1431 TCAATTCATATCGATATGGCGATTTTAAATTTATGTAAAATTGATATGCTAATTTTTTTG S I H I D M A I L N L C K I D M L I F L Q F I S I W R F - I Y V K L I C - F F - I N S Y R Y G D F K F M - N - Y A N F F . . . . . . 1371 ATTAGTTGTTGATTTAGTTATTTCATTTCTTAATCCATATTCAGGTATAGATTAAGTAAC I S C - F S Y F I S - S I F R Y R L S N L V V D L V I S F L N P Y S G I D - V T D - L L I - L F H F L I H I Q V - I K - . . . . . . 1311 ATTATAGTTAAATAAATAATTATTTTGTTAAGGAAAATCAAATCTCAAAAGTAAAGAATA I I V K - I I I L L R K I K S Q K - R I L - L N K - L F C - G K S N L K S K E - H Y S - I N N Y F V K E N Q I S K V K N . . . . . . 1251 AAGAATATTATGTGGGGCTTAAATGTGATTTTCTATTTTTGTATAGCCAAAAAATATATA K N I M W G L N V I F Y F C I A K K Y I R I L C G A - M - F S I F V - P K N I - K E Y Y V G L K C D F L F L Y S Q K I Y . . . . . . 1191 GAATGTAGAGTTTGATGAAGAGAAAGAGGATGGGTCGATGTTGGGATAGGATGTGGTGAG E C R V - - R E R G W V D V G I G C G E N V E F D E E K E D G S M L G - D V V R R M - S L M K R K R M G R C W D R M W - . . . . . . 1131 ACTTGGGAGTTTCAAGAAGAAGAAACAAGCACGGATATGGGGGTTTTGAGAAAGGGGTAG T W E F Q E E E T S T D M G V L R K G - L G S F K K K K Q A R I W G F - E R G R D L G V S R R R N K H G Y G G F E K G V . . 1071 AGGAATTTGAAGAA R N L K G I - R E E F E E Maximal non-overlapping open reading frames (>= 64 codons): >C06HBa0024L21.1-5-_PGL-1_AGS-1_PPS_1 (1685 1437) (frame '2'; 246 bp, 82 residues) 1 VKSQFHIDDM SYNYFFIFFT FPHLLNNLFF TLHLCSSFHL GQFLKIQNLI LIDSFYFLLF 61 CNYLLLLPSI LISVTIFFFP TR- 3-phase translation of AGS-1 (+strand): . . . . . . 1058 TTCTTCAAATTCCTCTACCCCTTTCTCAAAACCCCCATATCCGTGCTTGTTTCTTCTTCT F F K F L Y P F L K T P I S V L V S S S S S N S S T P F S K P P Y P C L F L L L L Q I P L P L S Q N P H I R A C F F F . . . . . . 1118 TGAAACTCCCAAGTCTCACCACATCCTATCCCAACATCGACCCATCCTCTTTCTCTTCAT - N S Q V S P H P I P T S T H P L S L H E T P K S H H I L S Q H R P I L F L F I L K L P S L T T S Y P N I D P S S F S S . . . . . . 1178 CAAACTCTACATTCTATATATTTTTTGGCTATACAAAAATAGAAAATCACATTTAAGCCC Q T L H S I Y F L A I Q K - K I T F K P K L Y I L Y I F W L Y K N R K S H L S P S N S T F Y I F F G Y T K I E N H I - A . . . . . . 1238 CACATAATATTCTTTATTCTTTACTTTTGAGATTTGATTTTCCTTAACAAAATAATTATT H I I F F I L Y F - D L I F L N K I I I T - Y S L F F T F E I - F S L T K - L F P H N I L Y S L L L R F D F P - Q N N Y . . . . . . 1298 TATTTAACTATAATGTTACTTAATCTATACCTGAATATGGATTAAGAAATGAAATAACTA Y L T I M L L N L Y L N M D - E M K - L I - L - C Y L I Y T - I W I K K - N N - L F N Y N V T - S I P E Y G L R N E I T . . . . . . 1358 AATCAACAACTAATCAAAAAAATTAGCATATCAATTTTACATAAATTTAAAATCGCCATA N Q Q L I K K I S I S I L H K F K I A I I N N - S K K L A Y Q F Y I N L K S P Y K S T T N Q K N - H I N F T - I - N R H . . . . . . 1418 TCGATATGAATTGATAGTTTCATCTAGTTGGGAAAAAAAATATGGTGACTGATATAAGTA S I - I D S F I - L G K K I W - L I - V R Y E L I V S S S W E K K Y G D - Y K Y I D M N - - F H L V G K K N M V T D I S . . . . . . 1478 TTGATGGAAGTAATAGTAAATAATTACAAAATAATAAAAAATAAAAGGAATCAATCAATA L M E V I V N N Y K I I K N K R N Q S I - W K - - - I I T K - - K I K G I N Q Y I D G S N S K - L Q N N K K - K E S I N . . . . . . 1538 TTAAATTTTGAATCTTAAGAAATTGACCCAAGTGAAATGAAGAGCATAGGTGAAGAGTGA L N F E S - E I D P S E M K S I G E E - - I L N L K K L T Q V K - R A - V K S E I K F - I L R N - P K - N E E H R - R V . . . . . . 1598 AAAATAAATTATTTAAAAGATGTGGAAAAGTAAAAAAAATAAAAAAATAATTATATGACA K I N Y L K D V E K - K K - K N N Y M T K - I I - K M W K S K K N K K I I I - H K N K L F K R C G K V K K I K K - L Y D . . . . . . 1658 TGTCATCAATATGAAACTGAGATTTTACTTAGTAGAGCGCGTGCACTTCACCCATAATAT C H Q Y E T E I L L S R A R A L H P - Y V I N M K L R F Y L V E R V H F T H N M M S S I - N - D F T - - S A C T S P I I . . 1718 GAAACTGATATTGT E T D I K L I L - N - Y C Maximal non-overlapping open reading frames (>= 64 codons): none AGS-2 (3284 3236,2774 1964) SCR (e 1.000 d 0.977 a 0.998,e 0.997) Exon 1 3284 3236 ( 49 n); score: 1.000 Intron 1 3235 2775 ( 461 n); Pd: 0.977 Pa: 0.998 Exon 2 2774 1964 ( 811 n); score: 0.997 PGS (2418 1964) SGN-E285304+ PGS (2291 1965) SGN-E285787- PGS (2253 1970) SGN-E292812+ PGS (2477 1986) SGN-E371753+ PGS (2774 2050) SGN-E212661+ PGS (2525 2063) SGN-E266436- PGS (3260 3236,2774 2120) SGN-E264641+ PGS (3282 3236,2774 2253) SGN-E259186+ PGS (3267 3236,2774 2266) SGN-E256779+ PGS (3284 3236,2774 2270) SGN-E256887+ PGS (3284 3236,2774 2271) SGN-E259458+ PGS (3260 3236,2774 2366) SGN-E232940+ PGS (3266 3236,2774 2376) SGN-E301792+ PGS (3274 3236,2774 2398) SGN-E337275+ PGS (3284 3236,2774 2427) SGN-E309123+ PGS (3284 3236,2774 2436) SGN-E283551+ PGS (3284 3236,2774 2437) SGN-E304236+ PGS (3284 3236,2774 2438) SGN-E293109+ PGS (3284 3236,2774 2441) SGN-E252214+ PGS (3284 3236,2774 2446) SGN-E312205+ PGS (3284 3236,2774 2465) SGN-E318444+ PGS (3284 3236,2774 2473) SGN-E290753+ PGS (3284 3236,2774 2501) SGN-E260129+ PGS (3284 3236,2774 2520) SGN-E278586+ PGS (3284 3236,2774 2593) SGN-E336726+ PGS (3284 3236,2774 2668) SGN-E263831+ 3-phase translation of AGS-2 (-strand): . . . . . : . 3284 CCGTTTGGTCAAGTTCCAGCTTTTGAAGATGGAGATTTAAAGCTTTTTG : AGTCAAGAGCT P F G Q V P A F E D G D L K L F : E S R A R L V K F Q L L K M E I - S F L : S Q E L V W S S S S F - R W R F K A F - : V K S . . . . . . 2763 ATTACACAATACATAGCTCACACATATGCAGACAAAGGGAACCAACTTTTACCCAATGAC I T Q Y I A H T Y A D K G N Q L L P N D L H N T - L T H M Q T K G T N F Y P M T Y Y T I H S S H I C R Q R E P T F T Q - . . . . . . 2703 CCAAAGAAAATGGCAGTCATGTCTGTATGGATGGAAGTAGAAGCCCAGAAATTCGACCCC P K K M A V M S V W M E V E A Q K F D P Q R K W Q S C L Y G W K - K P R N S T P P K E N G S H V C M D G S R S P E I R P . . . . . . 2643 ATTGGTTCAAAACTAGGGTTTGAGATTGTCATTAAGCCAATGTTGGGCATGGTGACTGAT I G S K L G F E I V I K P M L G M V T D L V Q N - G L R L S L S Q C W A W - L M H W F K T R V - D C H - A N V G H G D - . . . . . . 2583 GATGCAGTCGTGGCAGAGAACGAAGAGAAACTCGGGAAACTTCTTGATGTGTATGAATCT D A V V A E N E E K L G K L L D V Y E S M Q S W Q R T K R N S G N F L M C M N L - C S R G R E R R E T R E T S - C V - I . . . . . . 2523 AGACTCAAGGAATCGAAATATTTGGGTGGTGAGAGTTTCACCCTAGCTGATTTGCACCAC R L K E S K Y L G G E S F T L A D L H H D S R N R N I W V V R V S P - L I C T T - T Q G I E I F G W - E F H P S - F A P . . . . . . 2463 GCCCCGTCTTTGCACTACTTGTCGGGGAGTAAAGTGAAGAGCTTGTTCGATGCTAGGCCT A P S L H Y L S G S K V K S L F D A R P P R L C T T C R G V K - R A C S M L G L R P V F A L L V G E - S E E L V R C - A . . . . . . 2403 CATGTTAGCGCTTGGGTTGCTGATATTTTGGCTAGGCCAGCTTGGTCTAAGACAATTGAG H V S A W V A D I L A R P A W S K T I E M L A L G L L I F W L G Q L G L R Q L S S C - R L G C - Y F G - A S L V - D N - . . . . . . 2343 TTGTCAAAACAGTAAGTTTAGTGGCGGATGGGTGAGTATCGCGTTGAAAGGAAGGGGGAA L S K Q - V - W R M G E Y R V E R K G E C Q N S K F S G G W V S I A L K G R G N V V K T V S L V A D G - V S R - K E G G . . . . . . 2283 CAATAGTTGGAAATGGCTGCTAATACCTCGTAGACTGAGGAGCAAAATATGGCCTATGTA Q - L E M A A N T S - T E E Q N M A Y V N S W K W L L I P R R L R S K I W P M Y T I V G N G C - Y L V D - G A K Y G L C . . . . . . 2223 TTACTAGTAGGTTAATAAATATAGGCCACAAGTAACACTCCTTTTGTAACCTTTTTGCTT L L V G - - I - A T S N T P F V T F L L Y - - V N K Y R P Q V T L L L - P F C F I T S R L I N I G H K - H S F C N L F A . . . . . . 2163 TGTGGTGTGCTCTTTTTTTTCCTTCCTATCCTTCATCCTTGTCTGTGAGTCAAGTGTTTG C G V L F F F L P I L H P C L - V K C L V V C S F F S F L S F I L V C E S S V C L W C A L F F P S Y P S S L S V S Q V F . . . . . . 2103 TTGTATCGTAAGACGTTCTCTTTTTATTGAATTTTTTGTGTGCGCGTATGCGTAAGCCGA L Y R K T F S F Y - I F C V R V C V S R C I V R R S L F I E F F V C A Y A - A D V V S - D V L F L L N F L C A R M R K P . . . . . . 2043 CTTGTACTTTTTTGAACCTACATTGCACTTTCATTTTGTGCCTTGTATAGGTCATAAAAT L V L F - T Y I A L S F C A L Y R S - N L Y F F E P T L H F H F V P C I G H K I T C T F L N L H C T F I L C L V - V I K . . 1983 AAGTGTTTACCATTAACAAA K C L P L T S V Y H - Q - V F T I N K Maximal non-overlapping open reading frames (>= 64 codons): >C06HBa0024L21.1-5-_PGL-1_AGS-2_PPS_1 (3284 3236,2774 2329) (frame '1'; 492 bp, 164 residues) 1 PFGQVPAFED GDLKLFESRA ITQYIAHTYA DKGNQLLPND PKKMAVMSVW MEVEAQKFDP 61 IGSKLGFEIV IKPMLGMVTD DAVVAENEEK LGKLLDVYES RLKESKYLGG ESFTLADLHH 121 APSLHYLSGS KVKSLFDARP HVSAWVADIL ARPAWSKTIE LSKQ- ... finished at: Mon Jul 24 23:17:54 2006 ________________________________________________________________________________ Sequence 6: C06HBa0024L21.1-6, from 1 to 7552, both strands analyzed. ... started at: Mon Jul 24 23:17:54 2006 EST library file: /tmp/cxgn-bacpublish-resources-MvEQ8q/sgn_ests; matching gDNA +strand ... ... found all matches, elapsed seconds = 6 ... matches indexed, elapsed seconds = 6 HitsTableSize = 1 EST library file: /tmp/cxgn-bacpublish-resources-MvEQ8q/sgn_ests; matching gDNA -strand ... ... found all matches, elapsed seconds = 6 ... matches indexed, elapsed seconds = 6 HitsTableSize = 0 ******************************************************************************** EST sequence 1 -strand 567 n (File: SGN-E539593-) 1 GAAGTGTTAA CGACAAATCT TAAAGTGATG GAAAATAAAG CACAAATAAA GTACGGCATG 61 ATACATATCT AATCTTGGTT TCAAATTTTA ACTTTGACCT CCAACGTTCA TAGTAAACAA 121 ACAAACACTT CAATTATCTA ACCCTTTAAT AAATAAACAC GCGAGTCGTA CCTGGCAAAC 181 ATGTAATGTG CATGTATTTT GTGCGAGTTA GGAGTAGTAA TTTTTGAGGT CCACAATGGT 241 AAAAAAATGC TGAAATAACA ACTCCACCAT TAATGAATCC CTTTTATATA TTTTTTTATA 301 TTTCCAAATC AAAATTCATT TAAATTTTTT TTAAATTCTA AAATGGACGC ATAAAATATT 361 TAATTAGTTG GCAGTCATTG AGTGGCTCAC TAATATACGT GGGAGCATTT GCATTTCACT 421 CTCTTTGTCT CCAAAAATCG TGTGTTTATT TATTTAATGG TATGATAGTT TAAGTGTCTA 481 TTTGTGCACT ATTAAAGTTG GAGGTCAAAG TCAAAATTTG AAGTCAAGTT TAGGGTCCAA 541 TATATGTATT ATGCCTATAA AATATGA Predicted gene structure (within gDNA segment 7552 to 6251): Exon 1 7088 6963 ( 126 n); cDNA 438 563 ( 126 n); score: 0.873 MATCH C06HBa0024L21.1-6- SGN-E539593- 0.873 126 0.222 C PGS_C06HBa0024L21.1-6-_SGN-E539593- (7088 6963) Alignment (genomic DNA sequence = upper lines): TCATGTGTTT ATTTATTTAA AAGTTGGATA GTTAAAGTGC ATGTTTGTGC ATTATGAAAG 7029 || ||||||| |||||||||| || |||| ||| ||||| | ||||||| | ||| |||| TCGTGTGTTT ATTTATTTAA TGGTATGATA GTTTAAGTGT CTATTTGTGC ACTATTAAAG 497 TTGGAGGTCA AAGTTAAAAT TTGAAGTCAA GTTTAGGGTC AAATATATGT ATTATGCCAA 6969 |||||||||| |||| ||||| |||||||||| |||||||||| ||||||||| |||||||| | TTGGAGGTCA AAGTCAAAAT TTGAAGTCAA GTTTAGGGTC CAATATATGT ATTATGCCTA 557 TTATAT 6963 | | || TAAAAT 563 hqPGS_C06HBa0024L21.1-6-_SGN-E539593- (7088 6963) Total number of EST alignments reported: 1 ________________________________________________________________________________ Predicted gene locations (1) in segment 1 to 7552: PGL 1 (- strand): 7088 6963 AGS-1 (7088 6963) SCR (e 0.873) Exon 1 7088 6963 ( 126 n); score: 0.873 PGS (7088 6963) SGN-E539593- 3-phase translation of AGS-1 (-strand): . . . . . . 7088 TCATGTGTTTATTTATTTAAAAGTTGGATAGTTAAAGTGCATGTTTGTGCATTATGAAAG S C V Y L F K S W I V K V H V C A L - K H V F I Y L K V G - L K C M F V H Y E S M C L F I - K L D S - S A C L C I M K . . . . . . 7028 TTGGAGGTCAAAGTTAAAATTTGAAGTCAAGTTTAGGGTCAAATATATGTATTATGCCAA L E V K V K I - S Q V - G Q I Y V L C Q W R S K L K F E V K F R V K Y M Y Y A N V G G Q S - N L K S S L G S N I C I M P . 6968 TTATAT L Y Y I I Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-1 (+strand): . . . . . . 6963 ATATAATTGGCATAATACATATATTTGACCCTAAACTTGACTTCAAATTTTAACTTTGAC I - L A - Y I Y L T L N L T S N F N F D Y N W H N T Y I - P - T - L Q I L T L T I I G I I H I F D P K L D F K F - L - . . . . . . 7023 CTCCAACTTTCATAATGCACAAACATGCACTTTAACTATCCAACTTTTAAATAAATAAAC L Q L S - C T N M H F N Y P T F K - I N S N F H N A Q T C T L T I Q L L N K - T P P T F I M H K H A L - L S N F - I N K . 7083 ACATGA T - H H M Maximal non-overlapping open reading frames (>= 64 codons): none ... finished at: Mon Jul 24 23:18:07 2006 ________________________________________________________________________________ Sequence 7: C06HBa0024L21.1-7, from 1 to 12446, both strands analyzed. ... started at: Mon Jul 24 23:18:07 2006 EST library file: /tmp/cxgn-bacpublish-resources-MvEQ8q/sgn_ests; matching gDNA +strand ... ... found all matches, elapsed seconds = 4 ... matches indexed, elapsed seconds = 5 HitsTableSize = 62 EST library file: /tmp/cxgn-bacpublish-resources-MvEQ8q/sgn_ests; matching gDNA -strand ... ... found all matches, elapsed seconds = 4 ... matches indexed, elapsed seconds = 4 HitsTableSize = 62 ******************************************************************************** EST sequence 2 -strand 679 n (File: SGN-E370357-) 1 TTGGAGGTGG TGTTGCCATG GTGGATTGGG GGAAAAATGG AATTGGACTT TGTAGGAGGA 61 GAAATGGGCA TTTACTTACA CAAATGGCCA CTATTTACAA GAAAACACAT CAGAAATTCG 121 AGGAAAATTC TGCATCCGTA GGCAAATTTG AAAAATTTTA CAAATGGCAG AGGTGTAATC 181 AATCAATAAT ATTTGGGTGA CAGCCGAATG ATTAATTGAC ACTCGAATAA AGCAAACGTA 241 CCGTCGTCTT CAACTCAACC GCAACTCTAG CCAGTCTTCA TTATACCGGA TTTCAGTGTG 301 AGCTAACGCT TCTAGCTTGG ACTGGATCTT CTTCTTCATG TCTTGATGCC TTGAAGTTCC 361 GGCATGGACT AGCTTTTTAG TTATTCTAGC TTTCTAGATA CTCTTAGAAT TAGTAATTTG 421 AGGATAGATG TTCTTGTGAT GATGACTTCC AGATTTTGGG GATAATAATA GTTGTTGAGT 481 TTTTAGAAGT TATTTAATTG ATTTTCATTA ATGAGTTTAA GTCTTCCGCA TTATATTCCG 541 TCATTATATT GAAATGTTGG ATTTTGTATT GGTTGGTTCG CTCACATAGG AGGGTAAGTG 601 TGGGTGCCAC TTGCGGCTCG ATTTGGGTCG TGACATTAAA GATTATCGAA TTCATAATAT 661 AATTGTAAGA AAAAAAAAA Predicted gene structure (within gDNA segment 6627 to 2178): Exon 1 3600 3346 ( 255 n); cDNA 231 485 ( 255 n); score: 0.894 Intron 1 3345 3264 ( 82 n); Pd: 0.000 (s: 0.94), Pa: 0.976 (s: 0) Exon 2 3263 3257 ( 7 n); cDNA 486 492 ( 7 n); score: 0.714 Intron 2 3256 3104 ( 153 n); Pd: 0.000 (s: 0), Pa: 0.256 (s: 0) Exon 3 3103 3088 ( 16 n); cDNA 493 507 ( 15 n); score: 0.750 PPA cDNA 667 679 MATCH C06HBa0024L21.1-7- SGN-E370357- 0.894 278 0.409 C PGS_C06HBa0024L21.1-7-_SGN-E370357- (3600 3346,3263 3257,3103 3088) Alignment (genomic DNA sequence = upper lines): AGCAAACGTG TCATCGTCTT CAACTCAACC GCAACTCTAG CCAGTCTCCA TTATTTCGGA 3541 ||||||||| | ||||||| |||||||||| |||||||||| ||||||| || |||| |||| AGCAAACGTA CCGTCGTCTT CAACTCAACC GCAACTCTAG CCAGTCTTCA TTATACCGGA 290 TATCAGGGTG AGCTAATGCT TCTAGCTTGG ACTGGATCTT CCTCTTCATG TCTTGATGCC 3481 | |||| ||| |||||| ||| |||||||||| |||||||||| | |||||||| |||||||||| TTTCAGTGTG AGCTAACGCT TCTAGCTTGG ACTGGATCTT CTTCTTCATG TCTTGATGCC 350 TTGAAGTTCC GGCATGGACT AGC-TTTTAC TTGTTTTAGC TTTTTAGAAT ACTCTTAG-T 3423 |||||||||| |||||||||| ||| ||||| || || |||| ||| ||| || |||||||| TTGAAGTTCC GGCATGGACT AGCTTTTTAG TTATTCTAGC TTTCTAG-AT ACTCTTAGAA 409 TTAGTACTTT GATCATAGAT GTTCTTGTGA TGATGACTTC CAGATTTTGG GGATAATAAT 3363 |||||| ||| || |||||| |||||||||| |||||||||| |||||||||| |||||||||| TTAGTAATTT GAGGATAGAT GTTCTTGTGA TGATGACTTC CAGATTTTGG GGATAATAAT 469 AGTTATTGAT TTTATTAATG AGTTTAAGTC TTCCGCATTA CTTTCTGTTG ATATTATATT 3303 |||| |||| ||| ||| AGTTGTTGAG TTT-TTA... .......... .......... .......... .......... 485 GAAATGTTAA GGTTTAGATT GGTTGGTTCA CTCACACAGG AGGGTAAGTG TGGGTGCCAG 3243 | | | || .......... .......... .......... .........G AAGTTA.... .......... 492 TCGCAGCCCG ATTTGGGTCG TGACAAATAC ATAATATGAT CAAACAACAT TCATACGCAG 3183 .......... .......... .......... .......... .......... .......... 492 AACACACATT GATTCATACC TGTTGTTGTG CATCTGTTGT TGGTTGACCT ATTGACAATC 3123 .......... .......... .......... .......... .......... .......... 492 TAATCTCTTC AATTATCAGC TTAGTTGAGT TATCA 3088 ||| |||| | | ||| .......... .........T TTAATTGA-T TTTCA 507 hqPGS_C06HBa0024L21.1-7-_SGN-E370357- (3600 3346,3263 3257) ******************************************************************************** EST sequence 27 -strand 686 n (File: SGN-E241789-) 1 TTGTTAATGA TGATGTCTTG GTATAAAAGA AGGCTTGATG AACTAAAAGA ATGAGGTTAG 61 GGGATCGGGT GTCACGAACC GACACGTAGT ATTAATGGAT CGGGTGTCAC GAACCGACAC 121 ATAGTATTAA TGGATCGGGT GTCACGAATC GGCACGTAGT ATTAGGAGAT CGGGTGTAAC 181 GAACCGACAC GTAGTATTAG GGGATCGGGT GTCACGAACC GACACGTAGC ATTAGGGGAT 241 CGGAGTATCA CGTTCCGACA CCACGATAGT AAAAAGAATG AATCTTGAAT TATGTTAATG 301 TACTCAATTT AATGAACCTG TTTCCCAAAT GAGTATGGTG TGGAGGCTTG AGTCCTCATA 361 GATGTTCTTG GGTTGTGCCC AATGGTTATG GTACTTGTTG TTGTCACCTG TTAAGTGTTA 421 TGGTTGATTT TATTTTATTA TTTGATATAT ATTGTTCTCT ATTCTGAGTT GGCCGATGAT 481 ATCTACTCAG TACTCGTGTT TGTACTGACC CCTACTTTTA TGTTTTCTTT TTGTTAATTG 541 TGGAGTGCAG CAAACGTACC GTCGTCTTCA ACTCAACCGC AACTCTAACC AGTCTTCATC 601 ACGTCAGATT TCAGGGTGAG CTATTGTTCC TAGCTCGGAC TGGATTCTCT CTCATTCATG 661 TCTTGATGTC CTTGAAGATC AGACAT Predicted gene structure (within gDNA segment 5034 to 1702): Exon 1 4360 4160 ( 201 n); cDNA 2 190 ( 189 n); score: 0.761 Intron 1 4159 3967 ( 193 n); Pd: 0.000 (s: 0.70), Pa: 0.000 (s: 0.70) Exon 2 3966 3472 ( 495 n); cDNA 191 680 ( 490 n); score: 0.813 MATCH C06HBa0024L21.1-7- SGN-E241789- 0.798 696 1.015 C PGS_C06HBa0024L21.1-7-_SGN-E241789- (4360 4160,3966 3472) Alignment (genomic DNA sequence = upper lines): TGAGATTGAT GATGTCTTGG TAAGAAAGAA GGCTTGATGA ATTGATAGAA GGAGATTAGG 4301 || | |||| |||||||||| || |||||| |||||||||| | | | |||| ||| ||||| TGTTAATGAT GATGTCTTGG TATAAAAGAA GGCTTGATGA ACTAAAAGAA TGAGGTTAGG 61 GGATCGGGTG CCACGTTCCG GTACCAGGAT AGTATATGAG GATCGGAGTG TCACGTTCCG 4241 |||||||||| |||| || | | || | | ||||| | |||||| ||| ||||| ||| GGATCGGGTG TCACGAACC- G-A-CACG-T AGTATTAATG GATCGG-GTG TCACGAACCG 116 ACACCAGGAT AGAATATGGA TCGGGTGCCA CGTTTCGGTA CCAAGATAGA ATATGAGGAT 4181 ||| || | | | ||||| ||||||| || || |||| | | || | | || || ||| ACA-CATAGT ATTA-ATGGA TCGGGTGTCA CGAATCGGCA CGTAG-T--A TTAGGA-GAT 170 CGGAGTGTCA CGTTCCGACA CTAGGATAGA ATATGGATCG GGTGCCACAT TTCGGTACCA 4121 ||| |||| | || |||||| | CGG-GTGTAA CGAACCGACA C......... .......... .......... .......... 190 GGATAGTATA TGAGGATCGG AGTGTCACGT TCCGACACCA GGATAGAATA TGGATCGGGT 4061 .......... .......... .......... .......... .......... .......... 190 GCCACGTTCC GGTACCAGGA TAGTATATGA GGATCGGAGT GTCACGTTCC GACACCAGAA 4001 .......... .......... .......... .......... .......... .......... 190 TAGAATATGG ATCGGGTGCC ACGTTCGGTA CCAGGATAGT ATATGAGGAT CGGGTGCCAC 3941 | |||| || | |||| |||||| ||| .......... .......... .......... ....G-TAGT ATTAGGGGAT CGGGTGTCAC 215 GTTCCGGTAC CAGGATAGTA TATGAGGAGC GGAGTGTCAC GTACCGACAC GAGAGGAATA 3881 | || | | || | ||| | | | ||| | ||||| |||| || ||||||| | | || GAACC-G-A- CACG-TAGCA TTAGGGGATC GGAGTATCAC GTTCCGACAC CACGATAGTA 271 AAGATAATGA ATCTTGAAAG ATGTTAATAT ACTCAATCTA ATGAACCTAA ATCCCAAATG 3821 || | ||||| |||||||| |||||||| | ||||||| || |||||||| ||||||||| AAAAGAATGA ATCTTGAATT ATGTTAATGT ACTCAATTTA ATGAACCTGT TTCCCAAATG 331 AGTATGATGA GGAGGCGTGA GTCCTCATTG ATGAGCTTGG TGTTGTAACC AAGGGTTATG 3761 |||||| || |||||| ||| |||||||| | ||| ||||| ||||| || || ||||||| AGTATGGTGT GGAGGCTTGA GTCCTCATAG ATGTTCTTGG -GTTGTGCCC AATGGTTATG 390 GTAATTGTAA ATGCTACATG TTGAGTATCA TAGTTGATTT TATGATATTA CTTGGTATAT 3701 ||| |||| || || || || ||| | | | |||||||| ||| ||||| ||| ||||| GTACTTGTTG TTGTCACCTG TTAAGTGTTA TGGTTGATTT TATTTTATTA TTTGATATAT 450 ACTGTTTTCT ATTTTGAGTT GGCCGATGAT ACCTACTCAG TACTTGTGTT TGTACCGACC 3641 | |||| ||| ||| |||||| |||||||||| | |||||||| |||| ||||| ||||| || | ATTGTTCTCT ATTCTGAGTT GGCCGATGAT ATCTACTCAG TACTCGTGTT TGTACTGA-C 509 CCCTACTTTT ATGTTTTCTT TTTTGTTATT TGTGGAGTGC AGCAAACGTG TCATCGTCTT 3581 |||||||||| |||||||| | |||||||| | |||||||||| ||||||||| | ||||||| CCCTACTTTT ATGTTTTC-T TTTTGTTAAT TGTGGAGTGC AGCAAACGTA CCGTCGTCTT 568 CAACTCAACC GCAACTCTAG CCAGTCTCCA TTATTTCGGA TATCAGGGTG AGCTAATGCT 3521 |||||||||| ||||||||| ||||||| || | | || || | |||||||| ||||| || | CAACTCAACC GCAACTCTAA CCAGTCTTCA TCACGTCAGA TTTCAGGGTG AGCTATTGTT 628 TCTAGCTTGG ACTGGA-TCT TCCTC-TTCA TGTCTTGATG -CCTTGAAGT TC 3472 |||||| || |||||| ||| ||| |||| |||||||||| |||||||| || CCTAGCTCGG ACTGGATTCT CTCTCATTCA TGTCTTGATG TCCTTGAAGA TC 680 hqPGS_C06HBa0024L21.1-7-_SGN-E241789- (4360 4160,3966 3472) ******************************************************************************** EST sequence 59 +strand 774 n (File: SGN-E349977+) 1 GATGTTGTAA ACCTGTCTAT ATGCTTATTG GTATGCTTGC ATGATTATGA TTATGAAATT 61 GTTATGAATT AACAAAGCAT GATGAAGCTA TTGAATCCCA AATCTTGAAA GAACCCTAAT 121 TCACTTGATA TATTATATAA TAAGATTGAT GAGGCCTTAG TATGAGAGAA GGCTTGATAA 181 ATTATATAAT GAGAATGATG ATGCCTTAGT GTAGAAGAAG GCTTGATGAA TTAGGGGATC 241 GGGTGCCACG TTTCGGTACC AGGATAGAAT GAATATGAGG ATCGGAGTGT CACGTTCCGA 301 CACCAGGATA GAATATGAGG ATCGGAGTGT CACGTTCCGA CACCAGGATA GAATATGAGG 361 ATCGGGTGCC ACGTTCCGGT ACCAGGATAG AATGAATATG AGGATCGGAG TGTTACGTTC 421 CGACACCAGG ATAGAATATG AGGATCGGGT GCCACGTTCC GGTACCAGGA TAGAATGAAT 481 ATGAGGATCG GAGTGCCACG TTCCGGCACC AGGATAGAAA TAGAGGAGCG GAGTGTCACG 541 TACCGACACA AGAGGAAGAA AGATAATGAA TCTTGAAAGA TAATGAATAT ACTCAATCTA 601 ATGAACTTAA TTCCCAAATG AGTATGGTAT TGAGGCTTGA GTCCTCATGT GTGAACTTGA 661 CGGTAATTGT TAATGATNAA GAAATTGCTA TTGCTACATG ATGAGTATTG TAGTTGATTT 721 ACATTATTAT TGATATATAT TGTTCCCTAT TTTGAGTTAG CGATGATATC TACT Predicted gene structure (within gDNA segment 7081 to 1): Exon 1 4457 4413 ( 45 n); cDNA 78 122 ( 45 n); score: 0.856 Intron 1 4412 4380 ( 33 n); Pd: 0.000 (s: 0.86), Pa: 0.486 (s: 0.70) Exon 2 4379 4226 ( 154 n); cDNA 123 270 ( 148 n); score: 0.666 Intron 2 4225 4193 ( 33 n); Pd: 0.000 (s: 0.76), Pa: 0.000 (s: 0.98) Exon 3 4192 4151 ( 42 n); cDNA 271 312 ( 42 n); score: 0.976 Intron 3 4150 4114 ( 37 n); Pd: 0.000 (s: 0.98), Pa: 0.000 (s: 0.90) Exon 4 4113 3664 ( 450 n); cDNA 313 774 ( 462 n); score: 0.791 MATCH C06HBa0024L21.1-7- SGN-E349977+ 0.759 691 0.893 C PGS_C06HBa0024L21.1-7-_SGN-E349977+ (4457 4413,4379 4226,4192 4151,4113 3664) Alignment (genomic DNA sequence = upper lines): CATGATGAAG TTATTGAAAC CCAAATCTTG AAA-AATCCT AATCTCTTTG TTAATAATGA 4399 |||||||||| ||||||| | |||||||||| ||| || ||| ||| || CATGATGAAG CTATTGAATC CCAAATCTTG AAAGAACCCT AAT-TC.... .......... 122 GGCCTTGGTA TAAAAGAAGG CGTGATGAAC TAAAACTATG AGATTGATGA TGTCTTGGTA 4339 | |||| | | | | || |||||||||| | ||| ||| .......... .........A CTTGAT-ATA TTATATAATA AGATTGATGA GGCCTTAGTA 162 AGAAAGAAGG CTTGATGAAT TGATAGAAGG AGATTAGGGG ATCGGGTGCC ACGTTCCGGT 4279 || |||||| |||||| ||| | ||| || | ||| | | | || | | || | TGAGAGAAGG CTTGATAAAT T-ATATAATG AGAAT-GATG AT-GCCT-TA GTGTAGAAGA 218 A-CCAGGATA GTATATGAGG ATCGGAGTGT CACGTTCCGA CACCAGGATA GAATATGGAT 4220 | | ||| | || | || ||||| ||| |||||| || ||||||||| |||| AGGCTTGAT- GAATTAGGGG ATCGG-GTGC CACGTTTCGG TACCAGGATA GAAT...... 270 CGGGTGCCAC GTTTCGGTAC CAAGATAGAA TATGAGGATC GGAGTGTCAC GTTCCGACAC 4160 ||| |||||||||| |||||||||| |||||||||| .......... .......... .......GAA TATGAGGATC GGAGTGTCAC GTTCCGACAC 303 TAGGATAGAA TATGGATCGG GTGCCACATT TCGGTACCAG GATAGTATAT GAGGATCGGA 4100 |||||||| |||| |||||||||| CAGGATAGA. .......... .......... .......... ......ATAT GAGGATCGGA 326 GTGTCACGTT CCGACACCAG GATAGAATAT --GGATCGGG TGCCACGTTC CGGTACCAGG 4042 |||||||||| |||||||||| |||||||||| |||||||| |||||||||| |||||||||| GTGTCACGTT CCGACACCAG GATAGAATAT GAGGATCGGG TGCCACGTTC CGGTACCAGG 386 ATAG--T--A TATGAGGATC GGAGTGTCAC GTTCCGACAC CAGAATAGAA TAT--GGATC 3988 |||| | | |||||||||| ||||||| || |||||||||| ||| |||||| ||| ||||| ATAGAATGAA TATGAGGATC GGAGTGTTAC GTTCCGACAC CAGGATAGAA TATGAGGATC 446 GGGTGCCACG TT-CGGTACC AGGATAG--T --ATATGAGG ATCGG-GTGC CACGTTCCGG 3934 |||||||||| || ||||||| ||||||| | |||||||| ||||| |||| |||||||||| GGGTGCCACG TTCCGGTACC AGGATAGAAT GAATATGAGG ATCGGAGTGC CACGTTCCGG 506 TACCAGGATA GTATATGAGG AGCGGAGTGT CACGTACCGA CACGAGAGGA ATAAAGATAA 3874 ||||||||| | | |||| |||||||||| |||||||||| ||| |||||| | |||||||| CACCAGGATA GAAATAGAGG AGCGGAGTGT CACGTACCGA CACAAGAGGA AGAAAGATAA 566 TGAATCTTGA AAGAT-GTTA ATATACTCAA TCTAATGAAC CTAAATCCCA AATGAGTATG 3815 |||||||||| ||||| | | |||||||||| |||||||||| ||| ||||| |||||||||| TGAATCTTGA AAGATAATGA ATATACTCAA TCTAATGAAC TTAATTCCCA AATGAGTATG 626 ATGAGGAGGC GTGAGTCCTC ATTGATGAGC TTG-GTGTTG TAACCAAGGG TTATGGTAAT 3756 | ||||| ||||||||| || ||| | ||| || | || | | | | ||| GTATTGAGGC TTGAGTCCTC ATGTGTGAAC TTGACGGTAA TTGTTAATGA TNA-AGAAAT 685 TGTAAATGCT ACATGTTGAG TATCATAGTT GATTTTATGA TATTACTTGG TATATACTGT 3696 || | |||| ||||| |||| ||| ||||| || |||| ||||| ||| |||||| ||| TGCTATTGCT ACATGATGAG TATTGTAGTT GA-TTTACAT TATTA-TTGA TATATATTGT 743 TTTCTATTTT GAGTTGGCCG ATGATACCTA CT 3664 | ||||||| ||||| | || |||||| ||| || TCCCTATTTT GAGTTAG-CG ATGATATCTA CT 774 hqPGS_C06HBa0024L21.1-7-_SGN-E349977+ (4457 4413,4379 4226,4192 4151,4113 3664) ******************************************************************************** EST sequence 76 +strand 515 n (File: SGN-E242359+) 1 CCTAATCTAC TTTGTTAATA ATGATGCCTT GGTATAAAAG AAGGCTTGAT GAACGAAAGT 61 GGTGAGATTA GGGGATCGGG TGCCACGTTC CGGTACCAGG ATAGAATATG GATCGGGTGT 121 CACGTTCCGA CACCAGGATA GAATATGGAT CGGGTGCCAC GTTCCGGTAC CAGGATAGAA 181 TATGGATCGG GTGTCACGTT CCGACACCAG GATAGAATAT GGATCGGGTG TCACGTTCTG 241 ACACCAGGAT AGAATATGGA TCGGGTGCCA CGTTCCGGTG CCAGGATAGT ATATTGAGGA 301 GTGGAGTGTC ACGTAAGGAC ACGAGGGGAA TAAATATGAT GAATCTTGAA ATATGTTAAT 361 ATATGCAATC CAATGAACTA AATTCCCAAA TAAGTATGAT GAGGAGGTGT GAGTCCTCAT 421 TGATGTGCTT GGTGATGCAA CCAAGGGTTA TGGTAATTGC AAATGCTGCA TGCTAAGGAT 481 ATTAGTTAAT TTTATGATAT TGCTTAATAC ATACT Predicted gene structure (within gDNA segment 5296 to 2584): Exon 1 4421 4380 ( 42 n); cDNA 1 43 ( 43 n); score: 0.917 Intron 1 4379 4330 ( 50 n); Pd: 0.333 (s: 0.92), Pa: 0.000 (s: 0.85) Exon 2 4329 4140 ( 190 n); cDNA 44 227 ( 184 n); score: 0.908 Intron 2 4139 4100 ( 40 n); Pd: 0.000 (s: 0.92), Pa: 0.000 (s: 0.98) Exon 3 4099 4033 ( 67 n); cDNA 228 294 ( 67 n); score: 0.970 Intron 3 4032 3919 ( 114 n); Pd: 0.000 (s: 0.98), Pa: 0.000 (s: 0.88) Exon 4 3918 3698 ( 221 n); cDNA 295 515 ( 221 n); score: 0.864 MATCH C06HBa0024L21.1-7- SGN-E242359+ 0.896 520 1.010 C PGS_C06HBa0024L21.1-7-_SGN-E242359+ (4421 4380,4329 4140,4099 4033,3918 3698) Alignment (genomic DNA sequence = upper lines): CCTAATCT-C TTTGTTAATA ATGAGGCCTT GGTATAAAAG AAGGCGTGAT GAACTAAAAC 4363 |||||||| | |||||||||| |||| ||||| |||||||||| ||| CCTAATCTAC TTTGTTAATA ATGATGCCTT GGTATAAAAG AAG....... .......... 43 TATGAGATTG ATGATGTCTT GGTAAGAAAG AAGGCTTGAT GAATTGATAG AAG-GAGATT 4304 ||||||| ||| || || | |||||| .......... .......... .......... ...GCTTGAT GAA-CGAAAG TGGTGAGATT 69 AGGGGATCGG GTGCCACGTT CCGGTACCAG GATAGTATAT GAGGATCGGA GTGTCACGTT 4244 |||||||||| |||||||||| |||||||||| ||||| |||| ||||||| |||||||||| AGGGGATCGG GTGCCACGTT CCGGTACCAG GATAGAATAT --GGATCGG- GTGTCACGTT 126 CCGACACCAG GATAGAATAT GGATCGGGTG CCACGTTTCG GTACCAAGAT AGAATATGAG 4184 |||||||||| |||||||||| |||||||||| ||||||| || |||||| ||| ||||||| | CCGACACCAG GATAGAATAT GGATCGGGTG CCACGTTCCG GTACCAGGAT AGAATAT--G 184 GATCGGAGTG TCACGTTCCG ACACTAGGAT AGAATATGGA TCGGGTGCCA CATTTCGGTA 4124 |||||| ||| |||||||||| |||| ||||| |||||||||| |||| GATCGG-GTG TCACGTTCCG ACACCAGGAT AGAATATGGA TCGG...... .......... 227 CCAGGATAGT ATATGAGGAT CGGAGTGTCA CGTTCCGACA CCAGGATAGA ATATGGATCG 4064 |||||| ||||| |||| |||||||||| |||||||||| .......... .......... ....GTGTCA CGTTCTGACA CCAGGATAGA ATATGGATCG 263 GGTGCCACGT TCCGGTACCA GGATAGTATA TGAGGATCGG AGTGTCACGT TCCGACACCA 4004 |||||||||| |||||| ||| |||||||||| | GGTGCCACGT TCCGGTGCCA GGATAGTATA T......... .......... .......... 294 GAATAGAATA TGGATCGGGT GCCACGTTCG GTACCAGGAT AGTATATGAG GATCGGGTGC 3944 .......... .......... .......... .......... .......... .......... 294 CACGTTCCGG TACCAGGATA GTATATGAGG AGCGGAGTGT CACGTACCGA CACGAGAGGA 3884 ||||| || ||||||| |||||| || |||||| ||| .......... .......... .....TGAGG AGTGGAGTGT CACGTAAGGA CACGAGGGGA 329 ATAAAGATAA TGAATCTTGA AAGATGTTAA TATACTCAAT CTAATGAACC TAAATCCCAA 3824 ||||| || | |||||||||| || ||||||| |||| |||| | ||||||| || |||||| ATAAATATGA TGAATCTTGA AATATGTTAA TATATGCAAT CCAATGAACT AAATTCCCAA 389 ATGAGTATGA TGAGGAGGCG TGAGTCCTCA TTGATGAGCT TGGTGTTGTA ACCAAGGGTT 3764 || ||||||| |||||||| | |||||||||| |||||| ||| ||||| || | |||||||||| ATAAGTATGA TGAGGAGGTG TGAGTCCTCA TTGATGTGCT TGGTGATGCA ACCAAGGGTT 449 ATGGTAATTG TAAATGCTAC ATGTTGAGTA TCATAGTTGA TTTTATGATA TTACTTGGTA 3704 |||||||||| ||||||| | ||| | || | | ||||| | |||||||||| || ||| || ATGGTAATTG CAAATGCTGC ATGCTAAGGA TATTAGTTAA TTTTATGATA TTGCTTAATA 509 TATACT 3698 ||||| CATACT 515 hqPGS_C06HBa0024L21.1-7-_SGN-E242359+ (4421 4380,4329 4140,4099 4033,3918 3698) ******************************************************************************** EST sequence 74 +strand 729 n (File: SGN-E351546+) 1 TTGGCCGATG ATATCTACTC AGTAGCCGTG TTTTGTACTG ACCCCTACTT TTATGTTTTT 61 CTTCTTGGTA TTTGTGGAGT GCAGCAAACG TGCCGTCATC TTCGACTCAA CAGTAACTCA 121 AGCCAGTCTT CGTCACACCG GATCTTCAGG GTGAGCTAAC GCTTCTAGCT TGGACTGGAT 181 CTTCTCCTTC ATGTCTTGAT GCCTTGAACT TCCGGCATGG ACTAGCTTCT TATGTAATTT 241 TTTAGCTTCT TAGAAACTCT TAGAATTAGT AGTTTAAAGT AGATGTTCTT GTGATGATGA 301 CTTCCAGGTT TTGGGAATAA TAGATGTTTA ATAATAGTAG TTATTGATTT TATTAATGAG 361 TTTAAGTCTT CCGCATTACT TTCTGTTGCT ATTACATTGA AATGTTAAGG TTTAGATTGG 421 TTGGTTCGCT CACATAGGAG GGTAAGTGTG GGTGCCAGTG GCGGCCCGGA TTTGGGTCGT 481 GACAAAACTT GGTATCAGAG CATTAGGTTC GTTGGTCTCA TCACACAAGA ACAAGTCTAG 541 TAGAGTCTTA AGGAACGGTA GGGGGACGCT TTTACTTTTC CTTGAGAGGC TATAAGACTT 601 TAGGAAAACT TCACTCTTTC ATTCTTTCTT TCGTGCTACT ACTTCGAGTC AATTGGTATC 661 TAAGCGATAC GAATTGGTAT CTGACCATNC TCACTCTCTT GCCAGATGGG TAGAACTAGA 721 GCAACGACT Predicted gene structure (within gDNA segment 4651 to 176): Exon 1 3682 3217 ( 466 n); cDNA 1 485 ( 485 n); score: 0.785 MATCH C06HBa0024L21.1-7- SGN-E351546+ 0.785 466 0.639 C PGS_C06HBa0024L21.1-7-_SGN-E351546+ (3682 3217) Alignment (genomic DNA sequence = upper lines): TTGGCCGATG ATACCTACTC AGTACTTGTG -TTTGTACCG ACCCCCTACT TTTATGTTTT 3624 |||||||||| ||| |||||| |||| ||| ||||||| | || ||||||| |||||||||| TTGGCCGATG ATATCTACTC AGTAGCCGTG TTTTGTACTG AC-CCCTACT TTTATGTTTT 59 CTTTTTTGTT ATTTGTGGAG TGCAGCAAAC GTGTCATCGT CTTCAACTCA ACCGCAACTC 3564 || ||| | |||||||||| |||||||||| ||| | || | |||| ||||| || | ||||| TCTTCTTGGT ATTTGTGGAG TGCAGCAAAC GTGCCGTCAT CTTCGACTCA ACAGTAACTC 119 TAGCCAGTCT CCATTATTTC GGAT-ATCAG GGTGAGCTAA TGCTTCTAGC TTGGACTGGA 3505 ||||||||| | | | | |||| |||| |||||||||| ||||||||| |||||||||| AAGCCAGTCT TCGTCACACC GGATCTTCAG GGTGAGCTAA CGCTTCTAGC TTGGACTGGA 179 TCTTCCTCTT CATGTCTTGA TGCCTTGAAG TTCCGGCATG GACTAGCTT- TTA-CT--TG 3449 ||||| ||| |||||||||| ||||||||| |||||||||| ||||||||| ||| | | TCTTCTCCTT CATGTCTTGA TGCCTTGAAC TTCCGGCATG GACTAGCTTC TTATGTAATT 239 TTTTAGCTTT TTAGAATACT CTTAG-TTTA GTACTTTGAT CATAGATGTT CTTGTGATGA 3390 ||||||||| |||||| ||| ||||| ||| ||| ||| | |||||||| |||||||||| TTTTAGCTTC TTAGAA-ACT CTTAGAATTA GTAGTTT-AA AGTAGATGTT CTTGTGATGA 297 TGACTTCCAG ATTTTGGG-- -----GA--- -TAAT-A-A- TAGTTATTGA TTTTATTAAT 3344 |||||||||| ||||||| || |||| | | |||||||||| |||||||||| TGACTTCCAG GTTTTGGGAA TAATAGATGT TTAATAATAG TAGTTATTGA TTTTATTAAT 357 GAGTTTAAGT CTTCCGCATT ACTTTCTGTT GATATTATAT TGAAATGTTA AGGTTTAGAT 3284 |||||||||| |||||||||| |||||||||| | ||||| || |||||||||| |||||||||| GAGTTTAAGT CTTCCGCATT ACTTTCTGTT GCTATTACAT TGAAATGTTA AGGTTTAGAT 417 TGGTTGGTTC ACTCACACAG GAGGGTAAGT GTGGGTGCCA GTCGCAGCCC -GATTTGGGT 3225 |||||||||| |||||| || |||||||||| |||||||||| || || |||| ||||||||| TGGTTGGTTC GCTCACATAG GAGGGTAAGT GTGGGTGCCA GTGGCGGCCC GGATTTGGGT 477 CGTGACAA 3217 |||||||| CGTGACAA 485 hqPGS_C06HBa0024L21.1-7-_SGN-E351546+ (3682 3217) ******************************************************************************** EST sequence 100 +strand 580 n (File: SGN-E356206+) 1 TTGGCCGATG ATATCTACTC AGTAGCCGTG TTTTGTACTG ACCCCTACTT TTATGTTTTT 61 CTTCTTGTTA TTTGTGGAGT GCAGCAAACG TGCCGTCATC TTCGACTCAA CAGTAACTCA 121 AGCCAGTCTT CGTCACACCG GATCTTCAGG GTGAGCTAAC GCTTCTAGCT TGGACTGGAT 181 CTTCTCCTTC ATGTCTTGAT GCCTTGAACT TCCGGCATGG ACTAGCTTCT TATGTAATTT 241 TTTAGCTTCT TAGAAACTCT TAGAATTAGT AGTTTAAAGT AGATGTTCTT GTGATGATGA 301 CTTCCAGGTT TTGGGAATAA TAGATGTTTA ATAATAGTAG TTATTGATTT TATTAATGAG 361 TTTAAGTCTT CCGCATTACT TTCTGTTGCT ATTACATTGA AATGTTAAGG TTTAGATTGG 421 TTGGTTCGCT CACATAGGAG GGTAAGTGTG GGTGCCAGTG GCGGCCCGGA TTTGGGTCGT 481 GACAAAACTT GGTATCAGAG CATTAGGGTC GTTGGTCTCA TCACACAAGA ACAAGTCTAG 541 TAGAGTCTTA AGGGACGGTA NGGGGACGCT TTTACTTTTC Predicted gene structure (within gDNA segment 4651 to 1666): Exon 1 3682 3217 ( 466 n); cDNA 1 485 ( 485 n); score: 0.788 MATCH C06HBa0024L21.1-7- SGN-E356206+ 0.788 466 0.803 C PGS_C06HBa0024L21.1-7-_SGN-E356206+ (3682 3217) Alignment (genomic DNA sequence = upper lines): TTGGCCGATG ATACCTACTC AGTACTTGTG -TTTGTACCG ACCCCCTACT TTTATGTTTT 3624 |||||||||| ||| |||||| |||| ||| ||||||| | || ||||||| |||||||||| TTGGCCGATG ATATCTACTC AGTAGCCGTG TTTTGTACTG AC-CCCTACT TTTATGTTTT 59 CTTTTTTGTT ATTTGTGGAG TGCAGCAAAC GTGTCATCGT CTTCAACTCA ACCGCAACTC 3564 || ||||| |||||||||| |||||||||| ||| | || | |||| ||||| || | ||||| TCTTCTTGTT ATTTGTGGAG TGCAGCAAAC GTGCCGTCAT CTTCGACTCA ACAGTAACTC 119 TAGCCAGTCT CCATTATTTC GGAT-ATCAG GGTGAGCTAA TGCTTCTAGC TTGGACTGGA 3505 ||||||||| | | | | |||| |||| |||||||||| ||||||||| |||||||||| AAGCCAGTCT TCGTCACACC GGATCTTCAG GGTGAGCTAA CGCTTCTAGC TTGGACTGGA 179 TCTTCCTCTT CATGTCTTGA TGCCTTGAAG TTCCGGCATG GACTAGCTT- TTA-CT--TG 3449 ||||| ||| |||||||||| ||||||||| |||||||||| ||||||||| ||| | | TCTTCTCCTT CATGTCTTGA TGCCTTGAAC TTCCGGCATG GACTAGCTTC TTATGTAATT 239 TTTTAGCTTT TTAGAATACT CTTAG-TTTA GTACTTTGAT CATAGATGTT CTTGTGATGA 3390 ||||||||| |||||| ||| ||||| ||| ||| ||| | |||||||| |||||||||| TTTTAGCTTC TTAGAA-ACT CTTAGAATTA GTAGTTT-AA AGTAGATGTT CTTGTGATGA 297 TGACTTCCAG ATTTTGGG-- -----GA--- -TAAT-A-A- TAGTTATTGA TTTTATTAAT 3344 |||||||||| ||||||| || |||| | | |||||||||| |||||||||| TGACTTCCAG GTTTTGGGAA TAATAGATGT TTAATAATAG TAGTTATTGA TTTTATTAAT 357 GAGTTTAAGT CTTCCGCATT ACTTTCTGTT GATATTATAT TGAAATGTTA AGGTTTAGAT 3284 |||||||||| |||||||||| |||||||||| | ||||| || |||||||||| |||||||||| GAGTTTAAGT CTTCCGCATT ACTTTCTGTT GCTATTACAT TGAAATGTTA AGGTTTAGAT 417 TGGTTGGTTC ACTCACACAG GAGGGTAAGT GTGGGTGCCA GTCGCAGCCC -GATTTGGGT 3225 |||||||||| |||||| || |||||||||| |||||||||| || || |||| ||||||||| TGGTTGGTTC GCTCACATAG GAGGGTAAGT GTGGGTGCCA GTGGCGGCCC GGATTTGGGT 477 CGTGACAA 3217 |||||||| CGTGACAA 485 hqPGS_C06HBa0024L21.1-7-_SGN-E356206+ (3682 3217) ******************************************************************************** EST sequence 102 +strand 655 n (File: SGN-E356696+) 1 TTGGCCGATG ATATCTACTC AGTAGCCGTG TTTTGTACTG ACCCCTACTT TTATGTTTTT 61 CTTCTTGTTA TTTGTGGAGT GCAGCAAACG TGCCGTCATC TTCGACTCAA CAGTAACTCA 121 AGCCAGTCTT CGTCACACCG GATCTTCAGG GTGAGCTAAC GCTTCTAGCT TGGACTGGAT 181 CTTCTCCTTC ATGTCTTGAT GCCTTGAACT TCCGGCATGG ACTAGCTTCT TATGTAATTT 241 TTTAGCTTCT TAGAAACTCT TAGAATTAGT AGTTTAAAGT AGATGTTCTT GTGATGATGA 301 CTTCCAGGTT TTGGGAATAA TAGATGTTTA ATAATAGTAG TTATTGATTT TATTAATGAG 361 TTTAAGTCTT CCGCATTACT TTCTGTTGCT ATTACATTGA AATGTTAAGG TTTAGATTGG 421 TTGGTTCGCT CACATANGAG GGTAAGTGTG GGTGCCAGTG GCGGCCCGGA TTTGGGTCGT 481 GACAAAACTT GGTATCAGAG CATTAGGTTC GTTGGTCTCA TCACACAAGA ACAAGTCTAG 541 TAGAGTCTTA AGGAACGGTA GGGGGACGCT TTTACTTTTC CTTGAGAGGC TATAAGACTT 601 TAGGAAAACT TCACTCTTTC ATTCTTTCTT TCGTGCTACT ACTTGAGTCC AATTG Predicted gene structure (within gDNA segment 4651 to 916): Exon 1 3682 3217 ( 466 n); cDNA 1 485 ( 485 n); score: 0.785 MATCH C06HBa0024L21.1-7- SGN-E356696+ 0.785 466 0.711 C PGS_C06HBa0024L21.1-7-_SGN-E356696+ (3682 3217) Alignment (genomic DNA sequence = upper lines): TTGGCCGATG ATACCTACTC AGTACTTGTG -TTTGTACCG ACCCCCTACT TTTATGTTTT 3624 |||||||||| ||| |||||| |||| ||| ||||||| | || ||||||| |||||||||| TTGGCCGATG ATATCTACTC AGTAGCCGTG TTTTGTACTG AC-CCCTACT TTTATGTTTT 59 CTTTTTTGTT ATTTGTGGAG TGCAGCAAAC GTGTCATCGT CTTCAACTCA ACCGCAACTC 3564 || ||||| |||||||||| |||||||||| ||| | || | |||| ||||| || | ||||| TCTTCTTGTT ATTTGTGGAG TGCAGCAAAC GTGCCGTCAT CTTCGACTCA ACAGTAACTC 119 TAGCCAGTCT CCATTATTTC GGAT-ATCAG GGTGAGCTAA TGCTTCTAGC TTGGACTGGA 3505 ||||||||| | | | | |||| |||| |||||||||| ||||||||| |||||||||| AAGCCAGTCT TCGTCACACC GGATCTTCAG GGTGAGCTAA CGCTTCTAGC TTGGACTGGA 179 TCTTCCTCTT CATGTCTTGA TGCCTTGAAG TTCCGGCATG GACTAGCTT- TTA-CT--TG 3449 ||||| ||| |||||||||| ||||||||| |||||||||| ||||||||| ||| | | TCTTCTCCTT CATGTCTTGA TGCCTTGAAC TTCCGGCATG GACTAGCTTC TTATGTAATT 239 TTTTAGCTTT TTAGAATACT CTTAG-TTTA GTACTTTGAT CATAGATGTT CTTGTGATGA 3390 ||||||||| |||||| ||| ||||| ||| ||| ||| | |||||||| |||||||||| TTTTAGCTTC TTAGAA-ACT CTTAGAATTA GTAGTTT-AA AGTAGATGTT CTTGTGATGA 297 TGACTTCCAG ATTTTGGG-- -----GA--- -TAAT-A-A- TAGTTATTGA TTTTATTAAT 3344 |||||||||| ||||||| || |||| | | |||||||||| |||||||||| TGACTTCCAG GTTTTGGGAA TAATAGATGT TTAATAATAG TAGTTATTGA TTTTATTAAT 357 GAGTTTAAGT CTTCCGCATT ACTTTCTGTT GATATTATAT TGAAATGTTA AGGTTTAGAT 3284 |||||||||| |||||||||| |||||||||| | ||||| || |||||||||| |||||||||| GAGTTTAAGT CTTCCGCATT ACTTTCTGTT GCTATTACAT TGAAATGTTA AGGTTTAGAT 417 TGGTTGGTTC ACTCACACAG GAGGGTAAGT GTGGGTGCCA GTCGCAGCCC -GATTTGGGT 3225 |||||||||| |||||| | |||||||||| |||||||||| || || |||| ||||||||| TGGTTGGTTC GCTCACATAN GAGGGTAAGT GTGGGTGCCA GTGGCGGCCC GGATTTGGGT 477 CGTGACAA 3217 |||||||| CGTGACAA 485 hqPGS_C06HBa0024L21.1-7-_SGN-E356696+ (3682 3217) ******************************************************************************** EST sequence 29 -strand 840 n (File: SGN-E542084-) 1 GTTGCTGTAC ATATTCTACA AGGCATAATT TTCTTGAAAT TCCCAATATT GACACCTCAA 61 TGCAGCAAAC ATCATCTTTG CATAGAGATG GTTTTCCAAA ACAGACAGCA TTTATCATCT 121 GAGAAATTTC GGGGCTTTCT GAAAAAGAAA TAGAGTAGTC AGGAACTATC AACATGTATA 181 TAAAGCATCT AACTTTTCTA ATGACATCTT CATGGATGAT GTTGTCCAAC ACGAAGGTCT 241 CAGATGATCT CCAAACTAAA TCACCAAATG AGAGTGTTAT TTCTGCGTAA GCTCTTCCAT 301 CGCGTCTGCT AGCTTACACT CTCATTTACT TTGCAATGGG ATTCCTCTTT GGTTCCTCCT 361 TCAGCTTCTT CTCATTCCCG GTGTGCTTTC CCTTCTCCTC CGTCCACTGA TTTTAGCAAA 421 CGTGCCGTCA TCTTCGACTC AACAGTAACT CTAGCCAGTC TTCATTACTT CGGATATCAG 481 GGTGAGCTAA TGCTTTCTAG ATTGGACTGG ATCTTCCTCT TCATGTCTTG ATGTCTTGAA 541 GTTCCGGCAT GGACTAGCTT TTATGTATTT TTTAGCTTCT TAGAAACTCT TAGATTTAGT 601 AATTTGAAGT AGATGTTCTT ATGATGATGA CTTCCAGATT TTGGGAAATA ATAGTTATTG 661 AATTGGTTTT CATTAATAAG TTTAAGTCTT CCGCATTACT TTATGTTGAT ATTACATTGA 721 AATGTTAAGG TTTGGATTGG TTGGTTCGCT CACATAGCAG GGTAAGTGTG GGTGCCAGTC 781 GCGATCCGAT TTGGGTCGTG ACATTTATAG AAGTAAGAAA TTTTCCCCTA AAAAAAAAAA Predicted gene structure (within gDNA segment 9436 to 2248): Exon 1 8582 8529 ( 54 n); cDNA 347 400 ( 54 n); score: 0.639 Intron 1 8528 6546 (1983 n); Pd: 0.833 (s: 0.60), Pa: 0.000 (s: 0) Exon 2 6545 6535 ( 11 n); cDNA 401 411 ( 11 n); score: 0.545 Intron 2 6534 3604 (2931 n); Pd: 0.972 (s: 0), Pa: 0.760 (s: 0.84) Exon 3 3603 3218 ( 386 n); cDNA 412 803 ( 392 n); score: 0.855 PPA cDNA 830 840 MATCH C06HBa0024L21.1-7- SGN-E542084- 0.828 451 0.537 C PGS_C06HBa0024L21.1-7-_SGN-E542084- (8582 8529,6545 6535,3603 3218) Alignment (genomic DNA sequence = upper lines): CTTTGTTTTC CTCTTC-GTT TCTCCTCTCT CTCGATCGTT CTTCTCCCTC TCTTTGTTCT 8524 ||||| || | |||| | | ||| ||| | | || | || ||| || || || | CTTTGGTTCC TCCTTCAGCT TCTTCTCATT CCCGGT-GTG CTTTCCCTTC TCCTC..... 400 TTCTATTTTT CTTATTCAAC CCTCTTTCTT TTGCCCTAAT TAGCATATAA TTAAGTATAA 8464 .......... .......... .......... .......... .......... .......... 400 AAGATGATGA ATTAACCCTT TAATTAATTC AAGGTTATCT CCTTTAACCC TCAAGTAGTT 8404 .......... .......... .......... .......... .......... .......... 400 AAATTATTAA CATTAACCCA CTAAATTTAT AATTATAGCA GGAATAGTCC AAAATGTCCC 8344 .......... .......... .......... .......... .......... .......... 400 TTAAAACACT TAAAGAAATC CGACTCAGCC TAGGATCACG CAGCCTGTGA CGGGCCGTCG 8284 .......... .......... .......... .......... .......... .......... 400 TGCCTGCGAC GGTCTGTCTT GCTGCTTCCG TCACAGAGTT CAGAGACTAG ATTTTTACCA 8224 .......... .......... .......... .......... .......... .......... 400 AGGGTCTGTG ACGGTCCGTC CTGCCACTTC GTCGTGAAGT TCAGAGAGTC GATTTCAGTA 8164 .......... .......... .......... .......... .......... .......... 400 TCCAAATTTT AGAATTCTAA GTGTTTTGGA ACGAGACCCC CACGACGGTC TGTCGTGCCC 8104 .......... .......... .......... .......... .......... .......... 400 ATGCCGGTTC ATCGTGGGAT CCGTCGACTT AGCCAGTTTT TCCAGAAATA AAATCTGCTG 8044 .......... .......... .......... .......... .......... .......... 400 CTCAAAACGA CTAAACAGGT CGTTACAATA GATACCAATT TACCCATCGT TCGTCTCCGA 7984 .......... .......... .......... .......... .......... .......... 400 ACGATCACAA GAAGGAAAAC AAGGGCGAAA ATGAGTACCT GAATCTGTAA ACAGGTGTGG 7924 .......... .......... .......... .......... .......... .......... 400 GTATCTTTCT CGCATATCAG TCTCCTTCTC CCAAGTGGAC TCTTCAACTG GTCGATTCTT 7864 .......... .......... .......... .......... .......... .......... 400 CCATTGAACT TTGATAGATG CAATCTCCAT TGATCTCAAC TTGCGAATTT CTCTATTTAG 7804 .......... .......... .......... .......... .......... .......... 400 AATGGCAACA GGCTTCTCCT CATAAGTCAA ATTCTCATCA AGAAGAACCG AATCCCAACG 7744 .......... .......... .......... .......... .......... .......... 400 AATGATGTAG TTTTCACCCC ATGGTATCTT TTCAACATAG ACACATGAAA TACCGGATGC 7684 .......... .......... .......... .......... .......... .......... 400 ACTCCTGACA GTCCTGGGGG CAAGACTAAT TCATAAGCCA CCTCCCCTAC TCGCTTAAGT 7624 .......... .......... .......... .......... .......... .......... 400 ACTTTAAATG GTCCAATATA CCTTGGGCTT AGCTTACCTC TTTTTCCAAA CCGCATCACC 7564 .......... .......... .......... .......... .......... .......... 400 CCTTTCATGG GCGAAACCTT CAGCAAGACT TGCTCACCCT CCATGAACTC CAAGTCTCTA 7504 .......... .......... .......... .......... .......... .......... 400 ACCTTTCGAT CTGCATATTC CTTTTGCCTG CTTTGAGCCG CTAAGAGCTT TTCTTGAATA 7444 .......... .......... .......... .......... .......... .......... 400 GATTTCACCT TCTCTAATGA ATCCCTCAAA AGATCAGTAC CCCAAGGTCT AACCTCAAAT 7384 .......... .......... .......... .......... .......... .......... 400 GCATCAAACC AACCAATGGG AGACCTACAT CTCCTCCCAT ACAATGCTTC GAAAGGAGCC 7324 .......... .......... .......... .......... .......... .......... 400 ATATCAATAC TTGAGTGATA GCTATTATTG TATGAAAACT CCGCTAAGGG TAAGAATTTA 7264 .......... .......... .......... .......... .......... .......... 400 TCGCAATGAC CCCCAAATTC TATCACACAT GCACGAAGCA TATCTTCCAA CACCTGAATT 7204 .......... .......... .......... .......... .......... .......... 400 GTTCGTTCCG ACTGACCATC GGTCTGAGGG TGAAATGCAG TACTAAGGTC CAACCTAGTA 7144 .......... .......... .......... .......... .......... .......... 400 CCTAATTCAG CATGCAATGT TCTCCAAAAC TTAGAAGTAA ATTGCATACC TCTATCTAAT 7084 .......... .......... .......... .......... .......... .......... 400 ATGATGGAAA GTGGAACTCC ATGCAATCGA ACAATTTCTG AGATGTAAAT TTTGGCTAAC 7024 .......... .......... .......... .......... .......... .......... 400 TTCTCTGCAT TATAAGTCAC CTTGATCGGA ATGAAATGAG CAGACTTAGT TAATCTGTCC 6964 .......... .......... .......... .......... .......... .......... 400 ACAATTACCC AAATAGAGTC AAACTTCCCC AATGTCGTTG GAAGACCAAC CACGAAGCCC 6904 .......... .......... .......... .......... .......... .......... 400 ATTGCAATTC CTCCGGGCCT CTGGTGTTCA TACTTTACTT ATTGACAATT TGGACATTTG 6844 .......... .......... .......... .......... .......... .......... 400 GCAACAAAAT CAACAATGTC GCGCTTCATC CTACTCCACC AAAAGTGTTG CTTTAGGTCA 6784 .......... .......... .......... .......... .......... .......... 400 CGATACATCT TGGTTGCACC AGGATGTATA GAATATCAGG AACTATGAGC CTCTGTAAGA 6724 .......... .......... .......... .......... .......... .......... 400 ATAGTGTGAA CCAAATCATT AACACGGGGC ACACATACCC TTCCCTTAAT TCTCAAAACA 6664 .......... .......... .......... .......... .......... .......... 400 CCTTCCTCAT CCATTATTGC TTCTTTAGCC TCTCCTCACA ACACCATATC CCGAATTTGG 6604 .......... .......... .......... .......... .......... .......... 400 CTTAGTTTCT CATCATCAAA CTGTTTCCCC TTGATCTTTT CAAGAAAAGA AAATCTCGCC 6544 | .......... .......... .......... .......... .......... ........CG 402 TCCACATTGG CCAAAAATCC TCCCTTCTTA TTTACTTCTA ACCTCATAAG GTCGTTAGCC 6484 ||||| TCCACTGAT. .......... .......... .......... .......... .......... 411 AGAGTCTGAA CCTCTCTAGC CAATGGGCGT CTAGAAACTT ATAAGTGAGC TAGACTTCCC 6424 .......... .......... .......... .......... .......... .......... 411 ATGCTCCCTG CTTTTCTACT TAAGGCGTCT GCCACAACAT TAGCCTTTCC TGGGTGATAC 6364 .......... .......... .......... .......... .......... .......... 411 AAGATGGTAA CATCATAATC CTTCAGTAGT TTCATCCATC TCCAAAGACA ATCGTGGTTG 6304 .......... .......... .......... .......... .......... .......... 411 GTCTTCCAAA GACATTGGGG AAGTTTGACT CTATTTGGGT AATTGTGGAC AGATTAACTA 6244 .......... .......... .......... .......... .......... .......... 411 AGTCTGCTCA TTTCATTCCG ATCAAGGTGA CTTATAATGC AGAGAAGTTA GCCAAAATTT 6184 .......... .......... .......... .......... .......... .......... 411 ACATCTCAGA AATTGTTCGA TTGCATGGAG TTCCACTTTC CATCATATTA GATAGAGGTA 6124 .......... .......... .......... .......... .......... .......... 411 CGCAATTTAC TTCTAAGTTT TGGAGAACAT TGCATGCTGA TTAGGTACTA GGTTGGACCT 6064 .......... .......... .......... .......... .......... .......... 411 TAGTACTGCA TTTCACCCTC AGACCGATGG TCAGTCGGAA CGAACAATTC AGGTGTTGGA 6004 .......... .......... .......... .......... .......... .......... 411 AGATATGCTT CGTGCATGTG TGATAGAATT TGGGGGTCAT TGCGATAAAT TCTTACCCTT 5944 .......... .......... .......... .......... .......... .......... 411 AGCGGAGTTT TCATACAATA ATAGCTATCA CTCAAGTATT GATATGGCTC CTTTCGAAGC 5884 .......... .......... .......... .......... .......... .......... 411 ATTGTATGGG AGGAGATGTA GGTCTCCCAT TGGTTGGTTT GATGCATTTG AGGTTAGACC 5824 .......... .......... .......... .......... .......... .......... 411 TTGGGGTATT GATCTTTTGA GGGATTCATT AGAGAAGGTG AAATCTATTC AAGAAAAGCT 5764 .......... .......... .......... .......... .......... .......... 411 CTTAGCGGCT CAAAGCAGGC AAAAGGAATA TGCAGATCGA AAGGTTAGAG ACTTGGAGTT 5704 .......... .......... .......... .......... .......... .......... 411 CATGGAGGGT GAGCAAGTCT TGCTGAAGGT TTCGCCCATG AAAGGGGTGA TGCGGTTTGG 5644 .......... .......... .......... .......... .......... .......... 411 AAAAAGAGGT AAGCTAAGCC CAAGGTATAT TGGACCATTT AAAGTACTTA AGCGAGTAGG 5584 .......... .......... .......... .......... .......... .......... 411 GGAGGTGGCT TATGAATTAG TCTTGCCCCC AGGACTGTCA GGAGTGCATC CGGTATTTCA 5524 .......... .......... .......... .......... .......... .......... 411 TGTGTCTATG TTGAAAAGAT ACCATGGGGT GAAAACTACA TCATTCGTTG GGATTCGGTT 5464 .......... .......... .......... .......... .......... .......... 411 CTTCTTGATG AGAATTTGAC TTATGAGGAG AAGCCTGTTG CCATTCTAAA TAGAGAAATT 5404 .......... .......... .......... .......... .......... .......... 411 CGCAAGTTGA GATCAATGGA GATTGCATCT ATCAAAGTTC AATGGAAGAA TCGACCAGTT 5344 .......... .......... .......... .......... .......... .......... 411 GAATAGTCCA CTTGGGAGAA GGAGGCTGAT ATGCGAGAAA GATACCCACA CCTGTTTACA 5284 .......... .......... .......... .......... .......... .......... 411 GATTCAGGTA CTCATTTTCG CCCTTGTATC CTTCTTATGA TCGTTCGGGG ACGAACGATG 5224 .......... .......... .......... .......... .......... .......... 411 GGTAAATTGG TATCTATTGT AACGACCTGT TTAGTCGTTT TGAGCAGCAG ATTTTATTTC 5164 .......... .......... .......... .......... .......... .......... 411 TGGAAAAACA GGCTGAGACG ACGGAACCTA CGACGGACCG TCATGAGTAC GACGGACCGT 5104 .......... .......... .......... .......... .......... .......... 411 CGAGGGGTCT CGTTTCAAAA CACTTAGAAA TTTTGAAATT GGGTACTGAA AATCGACTCT 5044 .......... .......... .......... .......... .......... .......... 411 CTGAACTTCG TAACGGAATG GCAGGACGGA CCGTCACGGG CGTGACGGAC CGTCACAGAC 4984 .......... .......... .......... .......... .......... .......... 411 TCTTTGGTGG AAATTGAGTC TCTGAACCTT GCGATGACCT GCAGGACGGG CCGTCACAGG 4924 .......... .......... .......... .......... .......... .......... 411 TTGCGTAATC CCAGTCTGGG TCGGATTTCT GTTAAGTAAT TTAAGGGGTG TTTTGGACTA 4864 .......... .......... .......... .......... .......... .......... 411 TTCCAGCTTT ATTTATAAAG TTAGTGGGTT TATGTTAATA AGTCTAATTA CTTGGGTGTT 4804 .......... .......... .......... .......... .......... .......... 411 AAAAGAGGTA ACCTTGAGTA AATTAGTGGG TTATTATTGC CATCTTTTAT TCTTAATTAT 4744 .......... .......... .......... .......... .......... .......... 411 ATGCTAATTA GGGTAAAAGA AGGAGGGTTT GAATAAGAAA AAGAAAAGAA CAGAAAGAGA 4684 .......... .......... .......... .......... .......... .......... 411 GAGAAGGAGA ATCGATAGAG AGAGATGAAC GAAGAGGAAA AACACAAGGC TTTGGGAAAT 4624 .......... .......... .......... .......... .......... .......... 411 TCTTGCTTGA TCACTAGTCT TCGGTGGAGG TAGGTTATGG TTTCTCTTAC GATATTCGTA 4564 .......... .......... .......... .......... .......... .......... 411 GTAAACTCTT AATACCGAAT GATATGTATT GATAATATTG TAAACCCTGC TATGTGCTTA 4504 .......... .......... .......... .......... .......... .......... 411 CTTGTATGCT TGCATGAATG TAATTATATA ATTGTGATTA TATAAGCATG ATGAAGTTAT 4444 .......... .......... .......... .......... .......... .......... 411 TGAAACCCAA ATCTTGAAAA ATCCTAATCT CTTTGTTAAT AATGAGGCCT TGGTATAAAA 4384 .......... .......... .......... .......... .......... .......... 411 GAAGGCGTGA TGAACTAAAA CTATGAGATT GATGATGTCT TGGTAAGAAA GAAGGCTTGA 4324 .......... .......... .......... .......... .......... .......... 411 TGAATTGATA GAAGGAGATT AGGGGATCGG GTGCCACGTT CCGGTACCAG GATAGTATAT 4264 .......... .......... .......... .......... .......... .......... 411 GAGGATCGGA GTGTCACGTT CCGACACCAG GATAGAATAT GGATCGGGTG CCACGTTTCG 4204 .......... .......... .......... .......... .......... .......... 411 GTACCAAGAT AGAATATGAG GATCGGAGTG TCACGTTCCG ACACTAGGAT AGAATATGGA 4144 .......... .......... .......... .......... .......... .......... 411 TCGGGTGCCA CATTTCGGTA CCAGGATAGT ATATGAGGAT CGGAGTGTCA CGTTCCGACA 4084 .......... .......... .......... .......... .......... .......... 411 CCAGGATAGA ATATGGATCG GGTGCCACGT TCCGGTACCA GGATAGTATA TGAGGATCGG 4024 .......... .......... .......... .......... .......... .......... 411 AGTGTCACGT TCCGACACCA GAATAGAATA TGGATCGGGT GCCACGTTCG GTACCAGGAT 3964 .......... .......... .......... .......... .......... .......... 411 AGTATATGAG GATCGGGTGC CACGTTCCGG TACCAGGATA GTATATGAGG AGCGGAGTGT 3904 .......... .......... .......... .......... .......... .......... 411 CACGTACCGA CACGAGAGGA ATAAAGATAA TGAATCTTGA AAGATGTTAA TATACTCAAT 3844 .......... .......... .......... .......... .......... .......... 411 CTAATGAACC TAAATCCCAA ATGAGTATGA TGAGGAGGCG TGAGTCCTCA TTGATGAGCT 3784 .......... .......... .......... .......... .......... .......... 411 TGGTGTTGTA ACCAAGGGTT ATGGTAATTG TAAATGCTAC ATGTTGAGTA TCATAGTTGA 3724 .......... .......... .......... .......... .......... .......... 411 TTTTATGATA TTACTTGGTA TATACTGTTT TCTATTTTGA GTTGGCCGAT GATACCTACT 3664 .......... .......... .......... .......... .......... .......... 411 CAGTACTTGT GTTTGTACCG ACCCCCTACT TTTATGTTTT CTTTTTTGTT ATTTGTGGAG 3604 .......... .......... .......... .......... .......... .......... 411 TGCAGCAAAC GTGTCATCGT CTTCAACTCA ACCGCAACTC TAGCCAGTCT CCATTATTTC 3544 | ||||||| ||| | || | |||| ||||| || | ||||| |||||||||| ||||| ||| TTTAGCAAAC GTGCCGTCAT CTTCGACTCA ACAGTAACTC TAGCCAGTCT TCATTACTTC 471 GGATATCAGG GTGAGCTAAT GC-TTCTAGC TTGGACTGGA TCTTCCTCTT CATGTCTTGA 3485 |||||||||| |||||||||| || |||||| |||||||||| |||||||||| |||||||||| GGATATCAGG GTGAGCTAAT GCTTTCTAGA TTGGACTGGA TCTTCCTCTT CATGTCTTGA 531 TGCCTTGAAG TTCCGGCATG GACTAGCTTT TA-CT-TGTT TTAGCTTTTT AGAATACTCT 3427 || ||||||| |||||||||| |||||||||| || | | || ||||||| || |||| ||||| TGTCTTGAAG TTCCGGCATG GACTAGCTTT TATGTATTTT TTAGCTTCTT AGAA-ACTCT 590 TAG-TTTAGT ACTTTGATCA TAGATGTTCT TGTGATGATG ACTTCCAGAT TTTGGG-GAT 3369 ||| |||||| | ||||| |||||||||| | |||||||| |||||||||| |||||| || TAGATTTAGT AATTTGA-AG TAGATGTTCT TATGATGATG ACTTCCAGAT TTTGGGAAAT 649 AATA-ATAGT -TATTGATTT T-ATTAATGA GTTTAAGTCT TCCGCATTAC TTTCTGTTGA 3312 |||| || | |||| ||| | |||||| | |||||||||| |||||||||| ||| |||||| AATAGTTATT GAATTGGTTT TCATTAATAA GTTTAAGTCT TCCGCATTAC TTTATGTTGA 709 TATTATATTG AAATGTTAAG GTTTAGATTG GTTGGTTCAC TCACACAGGA GGGTAAGTGT 3252 ||||| |||| |||||||||| |||| ||||| |||||||| | ||||| || | |||||||||| TATTACATTG AAATGTTAAG GTTTGGATTG GTTGGTTCGC TCACATAGCA GGGTAAGTGT 769 GGGTGCCAGT CGCAGCCCGA TTTGGGTCGT GACA 3218 |||||||||| ||| |||| |||||||||| |||| GGGTGCCAGT CGCGATCCGA TTTGGGTCGT GACA 803 hqPGS_C06HBa0024L21.1-7-_SGN-E542084- (3603 3218) ******************************************************************************** EST sequence 53 -strand 710 n (File: SGN-E392027-) 1 CAGCAAACGT GCCATCGTGT TCAACTCAAC AGTAATTCAA GCCAGTCTTA CTACATCGGA 61 AATTCAGGGT GAGCTAATGC TTCTAGCTTG GACTGGATCT TCTTCTTCAA GTCTTGATGC 121 CTTGAACTTC CGGCATGGAC TAGCTTCTTA TGTATTTTTA GCTTTTAGAC TACTCTTAGT 181 TTAGTCATTT GATCGTAGAT GTTCTTGTGG TGATGACTTC CAGATTTTGG GGAATAATAG 241 ATGTTGAATT TTAGAAGTTA ATGAATTGGT CTGTATTTAA TGAGTTTAAG TCTTCCACAT 301 TACTTTCTGT TGATATTATA TTGAAATGTT AAGGTTAGAT TGGTTGGTTC GCTCACATAG 361 GAGGGTAAGT GTGGGTGCCA GTCGCAACCC GGTTTTGGTC GTGACAAACT TGGTATCAGA 421 GCATTAGGTT CGTTGGTCTC ATCACACAAG AACGAGTCTA GTAGAGTCTT AAGGAACGGT 481 AGGGGGATGC CTTTACTTTT CCTTGAGAGG CTATAAGACT TTTGGAAAAT TCCATTCTTT 541 CTTCTTTCGT GCTATTACTT GGGTCCAATT GGTATCTAGG TGATACAAAT TGGTATCTGA 601 CCATCTTCAC TCTATTTCGC AGATGGTTAG AACTAGAGCA ACGACTACGC CAGCATCAAC 661 ACCAGCACCG GCGGGACAGG GTGCGACTGA GCCAGCCACT GGGGCTGTGG Predicted gene structure (within gDNA segment 4778 to 1): Exon 1 3601 3219 ( 383 n); cDNA 1 405 ( 405 n); score: 0.753 Intron 1 3218 2775 ( 444 n); Pd: 0.000 (s: 0.92), Pa: 0.371 (s: 0) Exon 2 2774 2768 ( 7 n); cDNA 406 412 ( 7 n); score: 0.857 MATCH C06HBa0024L21.1-7- SGN-E392027- 0.753 390 0.549 C PGS_C06HBa0024L21.1-7-_SGN-E392027- (3601 3219,2774 2768) Alignment (genomic DNA sequence = upper lines): CAGCAAACGT GTCATCGTCT TCAACTCAAC CGCAACTCTA GCCAGTCTCC ATTATTTCGG 3542 |||||||||| | |||||| | |||||||||| | || || | |||||||| | || |||| CAGCAAACGT GCCATCGTGT TCAACTCAAC AGTAATTCAA GCCAGTCT-T ACTACATCGG 59 ATA-TCAGGG TGAGCTAATG CTTCTAGCTT GGACTGGATC TTCCTCTTCA TGTCTTGATG 3483 | | |||||| |||||||||| |||||||||| |||||||||| ||| |||||| ||||||||| AAATTCAGGG TGAGCTAATG CTTCTAGCTT GGACTGGATC TTCTTCTTCA AGTCTTGATG 119 CCTTGAAGTT CCGGCATGGA CTAGCTT-TT ACTTG-TTTT AGCTTTTTAG AATACTCTTA 3425 ||||||| || |||||||||| ||||||| || | | |||| ||| |||||| | |||||||| CCTTGAACTT CCGGCATGGA CTAGCTTCTT ATGTATTTTT AGC-TTTTAG ACTACTCTTA 178 GTTTAGTACT TTGATCATAG ATGTTCTTGT GATGATGACT TCCAGATTTT GGGG----AT 3369 ||||||| | |||||| ||| |||||||||| | |||||||| |||||||||| |||| || GTTTAGTCAT TTGATCGTAG ATGTTCTTGT GGTGATGACT TCCAGATTTT GGGGAATAAT 238 A-A---T-AA ---T---AGT TATTG-A-T- -T-T-TA-TT AATGAGTTTA AGTCTTCCGC 3327 | | | || | ||| || || | | | | || || |||||||||| |||||||| | AGATGTTGAA TTTTAGAAGT TAATGAATTG GTCTGTATTT AATGAGTTTA AGTCTTCCAC 298 ATTACTTTCT GTTGATATTA TATTGAAATG TTAAGGTTTA GATTGGTTGG TTCACTCACA 3267 |||||||||| |||||||||| |||||||||| |||||| ||| |||||||||| ||| |||||| ATTACTTTCT GTTGATATTA TATTGAAATG TTAAGG-TTA GATTGGTTGG TTCGCTCACA 357 CAGGAGGGTA AGTGTGGGTG CCAGTCGCAG CCCGATTTGG GTCGTGACAA ATACATAATA 3207 ||||||||| |||||||||| ||||||||| |||| ||| | |||||||| TAGGAGGGTA AGTGTGGGTG CCAGTCGCAA CCCGGTTTTG GTCGTGAC.. .......... 405 TGATCAAACA ACATTCATAC GCAGAACACA CATTGATTCA TACCTGTTGT TGTGCATCTG 3147 .......... .......... .......... .......... .......... .......... 405 TTGTTGGTTG ACCTATTGAC AATCTAATCT CTTCAATTAT CAGCTTAGTT GAGTTATCAA 3087 .......... .......... .......... .......... .......... .......... 405 CGTAAGTCTT GATTTCAACC ATGTGCTTGT CAACCTTATC AATGTATAAA AATATGTTAA 3027 .......... .......... .......... .......... .......... .......... 405 AATAATAAAA TAAAATATAG AATAGTTTTA TTAGTTAATT AAAACGTGAT TTGAACTAAC 2967 .......... .......... .......... .......... .......... .......... 405 ATTAACTTTG TGATTTTTCA ACTCCGCGTA ACTGTTCATT AAACAGTAAT AAATTTTGAT 2907 .......... .......... .......... .......... .......... .......... 405 ATGTATAATG TAATATCTAA AAACTATTAT AAGCACAAAT TTTTATTTAT ACCATTGCAA 2847 .......... .......... .......... .......... .......... .......... 405 TTTCAGCTTT CAACTCTACA TAATTTTTTT AAAAATCAAC GCCATGTTTT TCTGAGGTTT 2787 .......... .......... .......... .......... .......... .......... 405 CTCGCTCTTC AGAATCTTG 2768 || |||| .......... ..AAACTTG 412 hqPGS_C06HBa0024L21.1-7-_SGN-E392027- (3601 3219) ******************************************************************************** EST sequence 54 -strand 730 n (File: SGN-E546506-) 1 GTTCCGGTAC CAGGATAGAA TATGAGGATC GGAGTGTCAC GTTCCGACAC CAGGATAGAA 61 AATGGATCGG GTGCCACGTT CCGGTACCAG GATAGAATGA GGATCGGAGT GCCACGTTCC 121 GGCACCAGGA TAGAAATAGA GGATCGGAGT GTCACGTACC GACACAAGAG GAAGAAAGAT 181 AATGAATCTT GAAAGATAAT GAATATACTC AATCTAATGA ACTTAATTCC CAAATGAGTA 241 TGGTATTGAG GCTTGAGTCC TCATGTGTGA ACTCGGTTGT AGTTATTGAT GAATTCATGG 301 TGTTATTGCT ACATGTTGAG TATTGTAGTT GATTTACATT ATTATTGATA TATACTGTTC 361 CCTATTTTGA GTTGGCCGAT GATATCTACT CAGTACGTGT GGTTGTACTG ACCCCTACTT 421 TCATGTTTTC CTCTTTGTTA TTTGTGTAAT GCAGCAAACG TTCCGTCAAC TTCAACTCAA 481 CAGTAGATCT AGCCAGTCTT CACTTCATCG GAAAATTCAG GGTGAGCTAA TGCGTCTAGC 541 TTGGACTGGG TCTTCTTCTT CAAGTCTTGA TGCCTTGAAT TTCCGGCATG GACTAGCTTT 601 TTAGTTATTT TGTTCTTAGA CATTCCTAGT TAAGTAATTT GAGATAGATG TTCTTGTGAT 661 GATGACTTCC AGATTTTGGG GATAATAATA ATAGTATTGA ATTGTTTTTA TTAAAAAAAA 721 AAAAAAAAAA Predicted gene structure (within gDNA segment 5067 to 1): Exon 1 4055 3336 ( 720 n); cDNA 1 714 ( 714 n); score: 0.826 Intron 1 3335 2680 ( 656 n); Pd: 0.000 (s: 0.76), Pa: 0.522 (s: 0) Exon 2 2679 2670 ( 10 n); cDNA 715 724 ( 10 n); score: 0.800 MATCH C06HBa0024L21.1-7- SGN-E546506- 0.826 730 1.000 C PGS_C06HBa0024L21.1-7-_SGN-E546506- (4055 3336,2679 2670) Alignment (genomic DNA sequence = upper lines): GTTCCGGTAC CAGGATAGTA TATGAGGATC GGAGTGTCAC GTTCCGACAC CAGAATAGAA 3996 |||||||||| |||||||| | |||||||||| |||||||||| |||||||||| ||| |||||| GTTCCGGTAC CAGGATAGAA TATGAGGATC GGAGTGTCAC GTTCCGACAC CAGGATAGAA 60 TATGGATCGG GTGCCACGTT C-GGTACCAG GATAGTATAT GAGGATCGG- GTGCCACGTT 3938 ||||||||| |||||||||| | |||||||| ||||| | || ||||||||| |||||||||| AATGGATCGG GTGCCACGTT CCGGTACCAG GATAG-A-AT GAGGATCGGA GTGCCACGTT 118 CCGGTACCAG GATAGTATAT GAGGAGCGGA GTGTCACGTA CCGACACGAG AGGAATAAAG 3878 |||| ||||| ||||| | ||||| |||| |||||||||| ||||||| || ||||| |||| CCGGCACCAG GATAGAAATA GAGGATCGGA GTGTCACGTA CCGACACAAG AGGAAGAAAG 178 ATAATGAATC TTGAAAGAT- GTTAATATAC TCAATCTAAT GAACCTAAAT CCCAAATGAG 3819 |||||||||| ||||||||| | ||||||| |||||||||| |||| ||| | |||||||||| ATAATGAATC TTGAAAGATA ATGAATATAC TCAATCTAAT GAACTTAATT CCCAAATGAG 238 TATGATGAGG AGGCGTGAGT CCTCATTGAT GAGCTTGG-T GTTGTAACCA AGGGTTATGG 3760 |||| | | |||| ||||| |||||| | || || || | || || | | | | | TATGGTATTG AGGCTTGAGT CCTCATGTGT GAACTCGGTT GTAGTTATTG ATGAAT-TCA 297 TAATTGTAAA TGCTACATGT TGAGTATCAT AGTTGATTTT ATGATATTAC TTGGTATATA 3700 | ||| | |||||||||| ||||||| | |||||| ||| | ||||| ||| |||||| T-GGTGTTAT TGCTACATGT TGAGTATTGT AGTTGA-TTT ACATTATTA- TTGATATATA 354 CTGTTTTCTA TTTTGAGTTG GCCGATGATA CCTACTCAGT ACTTGTGTTT GTACCGACCC 3640 ||||| ||| |||||||||| |||||||||| ||||||||| || |||| || |||| || || CTGTTCCCTA TTTTGAGTTG GCCGATGATA TCTACTCAGT ACGTGTGGTT GTACTGA-CC 413 CCTACTTTTA TGTTTTCTTT TTTGTTATTT GTGGAGTGCA GCAAACGTGT CATCGTCTTC 3580 |||||||| | ||||||| | |||||||||| ||| | |||| |||||||| | || |||| CCTACTTTCA TGTTTTCCTC TTTGTTATTT GTGTAATGCA GCAAACGTTC CGTCAACTTC 473 AACTCAACCG CAACTCTAGC CAGTCTCCAT TATTTCGG-A TA-TCAGGGT GAGCTAATGC 3522 |||||||| | | |||||| |||||| || | |||| | | ||||||| |||||||||| AACTCAACAG TAGATCTAGC CAGTCTTCAC TTCATCGGAA AATTCAGGGT GAGCTAATGC 533 TTCTAGCTTG GACTGGATCT TCCTCTTCAT GTCTTGATGC CTTGAAGTTC CGGCATGGAC 3462 ||||||||| |||||| ||| || |||||| |||||||||| |||||| ||| |||||||||| GTCTAGCTTG GACTGGGTCT TCTTCTTCAA GTCTTGATGC CTTGAATTTC CGGCATGGAC 593 TAGC-TTTTA CTTGTTTTAG CTTTTTAGAA TACTCTTAGT TTAGTACTTT GATCATAGAT 3403 |||| ||||| || |||| | || |||| | | || |||| | |||| ||| || |||||| TAGCTTTTTA GTTATTTT-G -TTCTTAG-A CATTCCTAGT TAAGTAATTT GA-GATAGAT 649 GTTCTTGTGA TGATGACTTC CAGATTTTGG GGATAATAAT AGTTATTGAT TTTATTAATG 3343 |||||||||| |||||||||| |||||||||| |||||||||| | || | || | ||| | GTTCTTGTGA TGATGACTTC CAGATTTTGG GGATAATAAT A-ATAGT-AT TGAATTGTTT 707 AGTTTAAGTC TTCCGCATTA CTTTCTGTTG ATATTATATT GAAATGTTAA GGTTTAGATT 3283 |||| TTATTAA... .......... .......... .......... .......... .......... 714 GGTTGGTTCA CTCACACAGG AGGGTAAGTG TGGGTGCCAG TCGCAGCCCG ATTTGGGTCG 3223 .......... .......... .......... .......... .......... .......... 714 TGACAAATAC ATAATATGAT CAAACAACAT TCATACGCAG AACACACATT GATTCATACC 3163 .......... .......... .......... .......... .......... .......... 714 TGTTGTTGTG CATCTGTTGT TGGTTGACCT ATTGACAATC TAATCTCTTC AATTATCAGC 3103 .......... .......... .......... .......... .......... .......... 714 TTAGTTGAGT TATCAACGTA AGTCTTGATT TCAACCATGT GCTTGTCAAC CTTATCAATG 3043 .......... .......... .......... .......... .......... .......... 714 TATAAAAATA TGTTAAAATA ATAAAATAAA ATATAGAATA GTTTTATTAG TTAATTAAAA 2983 .......... .......... .......... .......... .......... .......... 714 CGTGATTTGA ACTAACATTA ACTTTGTGAT TTTTCAACTC CGCGTAACTG TTCATTAAAC 2923 .......... .......... .......... .......... .......... .......... 714 AGTAATAAAT TTTGATATGT ATAATGTAAT ATCTAAAAAC TATTATAAGC ACAAATTTTT 2863 .......... .......... .......... .......... .......... .......... 714 ATTTATACCA TTGCAATTTC AGCTTTCAAC TCTACATAAT TTTTTTAAAA ATCAACGCCA 2803 .......... .......... .......... .......... .......... .......... 714 TGTTTTTCTG AGGTTTCTCG CTCTTCAGAA TCTTGGTGAC TGGAAGACTT GATTCAAAAT 2743 .......... .......... .......... .......... .......... .......... 714 GGTTTCATCC GTGACATATA ACTCTTTTTG AGTAAAAATC ATATTTTTGA ATTTATGTTG 2683 .......... .......... .......... .......... .......... .......... 714 CAGAAATGAA AAA 2670 ||| || ||| ...AAAAAAA AAA 724 hqPGS_C06HBa0024L21.1-7-_SGN-E546506- (4055 3336) ******************************************************************************** EST sequence 71 +strand 405 n (File: SGN-E336814+) 1 CCCAAAGCAA ACAAAGCACT TCATGATCAT GGATTGACAT ATTGCTAATT TTCATTATCT 61 TCTGCTTTCC CTTGCATTAT TTTTTATGAC AAGGAAACCC GCAACTACTC CTTTGCAATA 121 GCTTGCAAAT CACACAAGAG AGCAAACGTG CCGTCATCTT CGACTCAACA GTAACTCTAG 181 CCAGTCTTCA TTATTCCGGA TATTAAGGTG AGCTAATGTT TCTAGCTTGG ACTGGATCTT 241 CCTCTTCATG TCTTGATGTC TTGAAGTTCC GGCATGGACT AGCTTTCTTG TATTTTAGCT 301 TTTTAGAACA CTCTTAGTTT AGTACTTTGA TCATAGATGT TCTTGTGGTG ATGACTTCCA 361 GATTTTGGGG ATAATAATAG TTATTGATTT TATTAAAAAA AAAAA Predicted gene structure (within gDNA segment 6311 to 2645): Exon 1 3600 3336 ( 265 n); cDNA 141 405 ( 265 n); score: 0.906 MATCH C06HBa0024L21.1-7- SGN-E336814+ 0.906 265 0.654 C PGS_C06HBa0024L21.1-7-_SGN-E336814+ (3600 3336) Alignment (genomic DNA sequence = upper lines): AGCAAACGTG TCATCGTCTT CAACTCAACC GCAACTCTAG CCAGTCTCCA TTATTTCGGA 3541 |||||||||| | || |||| | ||||||| | |||||||| ||||||| || ||||| |||| AGCAAACGTG CCGTCATCTT CGACTCAACA GTAACTCTAG CCAGTCTTCA TTATTCCGGA 200 TATCAGGGTG AGCTAATGCT TCTAGCTTGG ACTGGATCTT CCTCTTCATG TCTTGATGCC 3481 ||| | |||| |||||||| | |||||||||| |||||||||| |||||||||| |||||||| | TATTAAGGTG AGCTAATGTT TCTAGCTTGG ACTGGATCTT CCTCTTCATG TCTTGATGTC 260 TTGAAGTTCC GGCATGGACT AGCTTTTACT TGTTTTAGCT TTTTAGAATA CTCTTAGTTT 3421 |||||||||| |||||||||| |||||| | |||||||| |||||||| | |||||||||| TTGAAGTTCC GGCATGGACT AGCTTTCTTG TATTTTAGCT TTTTAGAACA CTCTTAGTTT 320 AGTACTTTGA TCATAGATGT TCTTGTGATG ATGACTTCCA GATTTTGGGG ATAATAATAG 3361 |||||||||| |||||||||| ||||||| || |||||||||| |||||||||| |||||||||| AGTACTTTGA TCATAGATGT TCTTGTGGTG ATGACTTCCA GATTTTGGGG ATAATAATAG 380 TTATTGATTT TATTAATGAG TTTAA 3336 |||||||||| |||||| | || TTATTGATTT TATTAAAAAA AAAAA 405 hqPGS_C06HBa0024L21.1-7-_SGN-E336814+ (3600 3336) ******************************************************************************** EST sequence 69 +strand 299 n (File: SGN-E373117+) 1 TCTTCTAGCT TGTCCAAATA CTGTCGTAAT TTTGGCAAAC GTACCGTCGT CTTCAACTCA 61 ACCGCAACTC TAGCCAGTCT TCATTACATC GGATTTCAGG GTGAGCTAAC GCTTCTAGCT 121 TGGACTGGAT CTTCTTCTTC ATGTCTTGAT GCCTTGAAGT TCCGGCATGG ACTAGCTGTT 181 TATGTATTTT AGCTTCTTAG ATACTCTTAG ATTTAGTAAT TTGAAGTAGA TGTTCTTGTG 241 ATGATGACTT CCAGATTTTG GGGATAATAA TAGTTGTTGA GTTTTTAGAA AAAAAAAAA Predicted gene structure (within gDNA segment 4647 to 2509): Exon 1 3598 3336 ( 263 n); cDNA 36 298 ( 263 n); score: 0.871 MATCH C06HBa0024L21.1-7- SGN-E373117+ 0.871 263 0.880 C PGS_C06HBa0024L21.1-7-_SGN-E373117+ (3598 3336) Alignment (genomic DNA sequence = upper lines): CAAACGTGTC ATCGTCTTCA ACTCAACCGC AACTCTAGCC AGTCTCCATT ATTTCGGATA 3539 ||||||| | ||||||||| |||||||||| |||||||||| ||||| |||| | |||||| CAAACGTACC GTCGTCTTCA ACTCAACCGC AACTCTAGCC AGTCTTCATT ACATCGGATT 95 TCAGGGTGAG CTAATGCTTC TAGCTTGGAC TGGATCTTCC TCTTCATGTC TTGATGCCTT 3479 |||||||||| |||| ||||| |||||||||| ||||||||| |||||||||| |||||||||| TCAGGGTGAG CTAACGCTTC TAGCTTGGAC TGGATCTTCT TCTTCATGTC TTGATGCCTT 155 GAAGTTCCGG CATGGACTAG CT-TTTACTT GTTTTAGCTT TTTAGAATAC TCTTAG-TTT 3421 |||||||||| |||||||||| || |||| | ||||||||| |||| |||| |||||| ||| GAAGTTCCGG CATGGACTAG CTGTTTATGT ATTTTAGCTT CTTAG-ATAC TCTTAGATTT 214 AGTACTTTGA TCATAGATGT TCTTGTGATG ATGACTTCCA GATTTTGGGG ATAATAATAG 3361 |||| ||||| ||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTAATTTGA -AGTAGATGT TCTTGTGATG ATGACTTCCA GATTTTGGGG ATAATAATAG 273 TTATTGATTT TATTAATGAG TTTAA 3336 || |||| || | | | | || TTGTTGAGTT TTTAGAAAAA AAAAA 298 hqPGS_C06HBa0024L21.1-7-_SGN-E373117+ (3598 3336) ******************************************************************************** EST sequence 22 -strand 299 n (File: SGN-E373116-) 1 CTCTTCTAGC TTGTCCAAAT ACTGTCGTAA TTTTGGCAAA CGTACCGTCG TCTTCAACTC 61 AACCGCAACT CTAGCCAGTC TTCATTACAT CGGATTTCAG GGTGAGCTAA CGCTTCTAGC 121 TTGGACTGGA TCTTCTTCTT CATGTCTTGA TGCCTTGAAG TTCCGGCATG GACTAGCTGT 181 TTATGTATTT TAGCTTCTTA GATACTCTTA GATTTAGTAA TTTGAAGTAG ATGTTCTTGT 241 GATGATGACT TCCAGATTTT GGGGATAATA ATAGTTGTTG AGTTTTTAGA AAAAAAAAA Predicted gene structure (within gDNA segment 4667 to 2529): Exon 1 3598 3336 ( 263 n); cDNA 37 299 ( 263 n); score: 0.871 MATCH C06HBa0024L21.1-7- SGN-E373116- 0.871 263 0.880 C PGS_C06HBa0024L21.1-7-_SGN-E373116- (3598 3336) Alignment (genomic DNA sequence = upper lines): CAAACGTGTC ATCGTCTTCA ACTCAACCGC AACTCTAGCC AGTCTCCATT ATTTCGGATA 3539 ||||||| | ||||||||| |||||||||| |||||||||| ||||| |||| | |||||| CAAACGTACC GTCGTCTTCA ACTCAACCGC AACTCTAGCC AGTCTTCATT ACATCGGATT 96 TCAGGGTGAG CTAATGCTTC TAGCTTGGAC TGGATCTTCC TCTTCATGTC TTGATGCCTT 3479 |||||||||| |||| ||||| |||||||||| ||||||||| |||||||||| |||||||||| TCAGGGTGAG CTAACGCTTC TAGCTTGGAC TGGATCTTCT TCTTCATGTC TTGATGCCTT 156 GAAGTTCCGG CATGGACTAG CT-TTTACTT GTTTTAGCTT TTTAGAATAC TCTTAG-TTT 3421 |||||||||| |||||||||| || |||| | ||||||||| |||| |||| |||||| ||| GAAGTTCCGG CATGGACTAG CTGTTTATGT ATTTTAGCTT CTTAG-ATAC TCTTAGATTT 215 AGTACTTTGA TCATAGATGT TCTTGTGATG ATGACTTCCA GATTTTGGGG ATAATAATAG 3361 |||| ||||| ||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTAATTTGA -AGTAGATGT TCTTGTGATG ATGACTTCCA GATTTTGGGG ATAATAATAG 274 TTATTGATTT TATTAATGAG TTTAA 3336 || |||| || | | | | || TTGTTGAGTT TTTAGAAAAA AAAAA 299 hqPGS_C06HBa0024L21.1-7-_SGN-E373116- (3598 3336) ******************************************************************************** EST sequence 79 +strand 219 n (File: SGN-E298638+) 1 TCATTACATC GGATTTCAGG GTGAGCTAAC GCTTCTAGCT TGGACTGGAT CTTCTTCTTC 61 ATGTCTTGAT GCCTTGAAGT TCCGGCATGG ACTAGCTGTT TATGTATTTT AGCTTCTTAG 121 ATACTCTTAG ATTTAGTAAT TTGAAGTACA TGTTCTTGTG ATGATGACTG CCAGATTTTG 181 GGGATAATAA TAGTTGTTGA GTTTTTAGAA AAAAAAAAA Predicted gene structure (within gDNA segment 4423 to 2509): Exon 1 3552 3336 ( 217 n); cDNA 2 218 ( 217 n); score: 0.853 MATCH C06HBa0024L21.1-7- SGN-E298638+ 0.853 217 0.991 C PGS_C06HBa0024L21.1-7-_SGN-E298638+ (3552 3336) Alignment (genomic DNA sequence = upper lines): CATTATTTCG GATATCAGGG TGAGCTAATG CTTCTAGCTT GGACTGGATC TTCCTCTTCA 3493 ||||| ||| ||| |||||| |||||||| | |||||||||| |||||||||| ||| |||||| CATTACATCG GATTTCAGGG TGAGCTAACG CTTCTAGCTT GGACTGGATC TTCTTCTTCA 61 TGTCTTGATG CCTTGAAGTT CCGGCATGGA CTAGCT-TTT ACTTGTTTTA GCTTTTTAGA 3434 |||||||||| |||||||||| |||||||||| |||||| ||| | | ||||| |||| |||| TGTCTTGATG CCTTGAAGTT CCGGCATGGA CTAGCTGTTT ATGTATTTTA GCTTCTTAG- 120 ATACTCTTAG -TTTAGTACT TTGATCATAG ATGTTCTTGT GATGATGACT TCCAGATTTT 3375 |||||||||| ||||||| | |||| || |||||||||| |||||||||| ||||||||| ATACTCTTAG ATTTAGTAAT TTGA-AGTAC ATGTTCTTGT GATGATGACT GCCAGATTTT 179 GGGGATAATA ATAGTTATTG ATTTTATTAA TGAGTTTAA 3336 |||||||||| |||||| ||| | ||| | | | || GGGGATAATA ATAGTTGTTG AGTTTTTAGA AAAAAAAAA 218 hqPGS_C06HBa0024L21.1-7-_SGN-E298638+ (3552 3336) ******************************************************************************** EST sequence 72 +strand 402 n (File: SGN-E352844+) 1 GGAGTGTCTT AGGTGCCTTA AACACCTTCC TAAGACGCTA ATAAGAATCC CGAATCCTAA 61 AAAATATTTT CAAAACGACT TTTCTGTTTA AATTGTTTTG AGAATGAGTT TTCTTGATTT 121 TTCTTAAAAA TTAAGTGGCG ACTCCTAAAG TCGAAAAATA CTTTAAAATA AAACAAACTC 181 TTTTCGAAAA ATCACCTTTT TTCGATAAAA CAAAGCTTCT AGCTTGGACT GGATCTTCTT 241 CTTCATGTCT TGATGCCTTG AAGTTCCGGC ATGGACTAGC TGTTTATGTA TTTTAGCTTC 301 TTAGATACTC TTAGATTTAG TAATTCGAAG TAGATGTTCT TGTGATGATA ACTTCCAGAT 361 TTTGGGAAAT AATAGTTATT GAATTGGTTT TTATAAAAAA AA Predicted gene structure (within gDNA segment 6263 to 2402): Exon 1 4730 4726 ( 5 n); cDNA 206 210 ( 5 n); score: 1.000 Intron 1 4725 3529 (1197 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.94) Exon 2 3528 3336 ( 193 n); cDNA 211 400 ( 190 n); score: 0.834 MATCH C06HBa0024L21.1-7- SGN-E352844+ 0.834 198 0.493 C PGS_C06HBa0024L21.1-7-_SGN-E352844+ (4730 4726,3528 3336) Alignment (genomic DNA sequence = upper lines): TAAAAGAAGG AGGGTTTGAA TAAGAAAAAG AAAAGAACAG AAAGAGAGAG AAGGAGAATC 4671 ||||| TAAAA..... .......... .......... .......... .......... .......... 210 GATAGAGAGA GATGAACGAA GAGGAAAAAC ACAAGGCTTT GGGAAATTCT TGCTTGATCA 4611 .......... .......... .......... .......... .......... .......... 210 CTAGTCTTCG GTGGAGGTAG GTTATGGTTT CTCTTACGAT ATTCGTAGTA AACTCTTAAT 4551 .......... .......... .......... .......... .......... .......... 210 ACCGAATGAT ATGTATTGAT AATATTGTAA ACCCTGCTAT GTGCTTACTT GTATGCTTGC 4491 .......... .......... .......... .......... .......... .......... 210 ATGAATGTAA TTATATAATT GTGATTATAT AAGCATGATG AAGTTATTGA AACCCAAATC 4431 .......... .......... .......... .......... .......... .......... 210 TTGAAAAATC CTAATCTCTT TGTTAATAAT GAGGCCTTGG TATAAAAGAA GGCGTGATGA 4371 .......... .......... .......... .......... .......... .......... 210 ACTAAAACTA TGAGATTGAT GATGTCTTGG TAAGAAAGAA GGCTTGATGA ATTGATAGAA 4311 .......... .......... .......... .......... .......... .......... 210 GGAGATTAGG GGATCGGGTG CCACGTTCCG GTACCAGGAT AGTATATGAG GATCGGAGTG 4251 .......... .......... .......... .......... .......... .......... 210 TCACGTTCCG ACACCAGGAT AGAATATGGA TCGGGTGCCA CGTTTCGGTA CCAAGATAGA 4191 .......... .......... .......... .......... .......... .......... 210 ATATGAGGAT CGGAGTGTCA CGTTCCGACA CTAGGATAGA ATATGGATCG GGTGCCACAT 4131 .......... .......... .......... .......... .......... .......... 210 TTCGGTACCA GGATAGTATA TGAGGATCGG AGTGTCACGT TCCGACACCA GGATAGAATA 4071 .......... .......... .......... .......... .......... .......... 210 TGGATCGGGT GCCACGTTCC GGTACCAGGA TAGTATATGA GGATCGGAGT GTCACGTTCC 4011 .......... .......... .......... .......... .......... .......... 210 GACACCAGAA TAGAATATGG ATCGGGTGCC ACGTTCGGTA CCAGGATAGT ATATGAGGAT 3951 .......... .......... .......... .......... .......... .......... 210 CGGGTGCCAC GTTCCGGTAC CAGGATAGTA TATGAGGAGC GGAGTGTCAC GTACCGACAC 3891 .......... .......... .......... .......... .......... .......... 210 GAGAGGAATA AAGATAATGA ATCTTGAAAG ATGTTAATAT ACTCAATCTA ATGAACCTAA 3831 .......... .......... .......... .......... .......... .......... 210 ATCCCAAATG AGTATGATGA GGAGGCGTGA GTCCTCATTG ATGAGCTTGG TGTTGTAACC 3771 .......... .......... .......... .......... .......... .......... 210 AAGGGTTATG GTAATTGTAA ATGCTACATG TTGAGTATCA TAGTTGATTT TATGATATTA 3711 .......... .......... .......... .......... .......... .......... 210 CTTGGTATAT ACTGTTTTCT ATTTTGAGTT GGCCGATGAT ACCTACTCAG TACTTGTGTT 3651 .......... .......... .......... .......... .......... .......... 210 TGTACCGACC CCCTACTTTT ATGTTTTCTT TTTTGTTATT TGTGGAGTGC AGCAAACGTG 3591 .......... .......... .......... .......... .......... .......... 210 TCATCGTCTT CAACTCAACC GCAACTCTAG CCAGTCTCCA TTATTTCGGA TATCAGGGTG 3531 .......... .......... .......... .......... .......... .......... 210 AGCTAATGCT TCTAGCTTGG ACTGGATCTT CCTCTTCATG TCTTGATGCC TTGAAGTTCC 3471 | || ||| |||||||||| |||||||||| | |||||||| |||||||||| |||||||||| ..C-AAAGCT TCTAGCTTGG ACTGGATCTT CTTCTTCATG TCTTGATGCC TTGAAGTTCC 267 GGCATGGACT AGCT-TTTAC TTGTTTTAGC TTTTTAGAAT ACTCTTAG-T TTAGTACTTT 3413 |||||||||| |||| |||| | ||||||| || |||| || |||||||| | |||||| || GGCATGGACT AGCTGTTTAT GTATTTTAGC TTCTTAG-AT ACTCTTAGAT TTAGTAATTC 326 GATCATAGAT GTTCTTGTGA TGATGACTTC CAGATTTTGG GGATAATAAT AGTTATTGAT 3353 || ||||| |||||||||| |||| ||||| |||||||| | ||| |||||| ||||||||| GA-AGTAGAT GTTCTTGTGA TGATAACTTC CAGATTTT-G GGA-AATAAT AGTTATTGAA 383 TTTATTAATG AGTTTAA 3336 || || | || TTGGTTTTTA TAAAAAA 400 hqPGS_C06HBa0024L21.1-7-_SGN-E352844+ (3528 3336) ******************************************************************************** EST sequence 96 +strand 666 n (File: SGN-E368629+) 1 ACGCCTTTTG CTTTATGAAA CTAAAAAATA AAAATTGAAG TTTTGAAACG ATAGAGGTTT 61 AAAATTTGAA AGTCTGCTTA GAGAGTTAAG GCTTAGAAAG TTTAACTAAG ACGGAATCTT 121 AAAAGATTAA TATCTCAAAT TTGCAAAGTT TGGCTAAGTA AATCGTGATA AAAGTTCAAA 181 TAAATTTGCA AAGGGTAAAA ATAAAAATAA TCAAATAAGT TAGTCGTTGG AAAACCGTAT 241 TTAACGGAGT GTCTTAGGTG CCTTAAACAC CTTCCTAAGA CGCTAATAAG AATCCCGAAT 301 CCTAAAAAAT ATTTTCAAAA CGACTTTTCT GTTTAAATTG TTTTGAGAAT GAGTTTTCTT 361 GATTTTTCTT AAAAATTAAG TGGCGACTCC TAAAGTCGAA AAATACTTTA AAATAAAACA 421 AACTCTTTTC GAAAAATCAC CTTTTTTCGA TAAAACAAAG CTTCTAGCTT GGACTGGATC 481 TTCTTCTTTA TGTCTTGATG CCTTGAAGTT TCGGCATGGA CTAACTGTGT TATGTATTTT 541 AGGCTCTTAG ATACTTCTAG ATTTAGTAAT TCGAAGTAGA TGTTCTTGTG ATGATAACTT 601 CCAGATTTTG GGAAATAATA GTTATTGAAT TGGTTTTTAT AAAAAAAAAA AAAAAAAAAA 661 AAAAAA Predicted gene structure (within gDNA segment 8713 to 2222): Exon 1 4730 4726 ( 5 n); cDNA 451 455 ( 5 n); score: 1.000 Intron 1 4725 3529 (1197 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.92) Exon 2 3528 3355 ( 174 n); cDNA 456 627 ( 172 n); score: 0.825 PPA cDNA 639 666 MATCH C06HBa0024L21.1-7- SGN-E368629+ 0.825 179 0.269 C PGS_C06HBa0024L21.1-7-_SGN-E368629+ (4730 4726,3528 3355) Alignment (genomic DNA sequence = upper lines): TAAAAGAAGG AGGGTTTGAA TAAGAAAAAG AAAAGAACAG AAAGAGAGAG AAGGAGAATC 4671 ||||| TAAAA..... .......... .......... .......... .......... .......... 455 GATAGAGAGA GATGAACGAA GAGGAAAAAC ACAAGGCTTT GGGAAATTCT TGCTTGATCA 4611 .......... .......... .......... .......... .......... .......... 455 CTAGTCTTCG GTGGAGGTAG GTTATGGTTT CTCTTACGAT ATTCGTAGTA AACTCTTAAT 4551 .......... .......... .......... .......... .......... .......... 455 ACCGAATGAT ATGTATTGAT AATATTGTAA ACCCTGCTAT GTGCTTACTT GTATGCTTGC 4491 .......... .......... .......... .......... .......... .......... 455 ATGAATGTAA TTATATAATT GTGATTATAT AAGCATGATG AAGTTATTGA AACCCAAATC 4431 .......... .......... .......... .......... .......... .......... 455 TTGAAAAATC CTAATCTCTT TGTTAATAAT GAGGCCTTGG TATAAAAGAA GGCGTGATGA 4371 .......... .......... .......... .......... .......... .......... 455 ACTAAAACTA TGAGATTGAT GATGTCTTGG TAAGAAAGAA GGCTTGATGA ATTGATAGAA 4311 .......... .......... .......... .......... .......... .......... 455 GGAGATTAGG GGATCGGGTG CCACGTTCCG GTACCAGGAT AGTATATGAG GATCGGAGTG 4251 .......... .......... .......... .......... .......... .......... 455 TCACGTTCCG ACACCAGGAT AGAATATGGA TCGGGTGCCA CGTTTCGGTA CCAAGATAGA 4191 .......... .......... .......... .......... .......... .......... 455 ATATGAGGAT CGGAGTGTCA CGTTCCGACA CTAGGATAGA ATATGGATCG GGTGCCACAT 4131 .......... .......... .......... .......... .......... .......... 455 TTCGGTACCA GGATAGTATA TGAGGATCGG AGTGTCACGT TCCGACACCA GGATAGAATA 4071 .......... .......... .......... .......... .......... .......... 455 TGGATCGGGT GCCACGTTCC GGTACCAGGA TAGTATATGA GGATCGGAGT GTCACGTTCC 4011 .......... .......... .......... .......... .......... .......... 455 GACACCAGAA TAGAATATGG ATCGGGTGCC ACGTTCGGTA CCAGGATAGT ATATGAGGAT 3951 .......... .......... .......... .......... .......... .......... 455 CGGGTGCCAC GTTCCGGTAC CAGGATAGTA TATGAGGAGC GGAGTGTCAC GTACCGACAC 3891 .......... .......... .......... .......... .......... .......... 455 GAGAGGAATA AAGATAATGA ATCTTGAAAG ATGTTAATAT ACTCAATCTA ATGAACCTAA 3831 .......... .......... .......... .......... .......... .......... 455 ATCCCAAATG AGTATGATGA GGAGGCGTGA GTCCTCATTG ATGAGCTTGG TGTTGTAACC 3771 .......... .......... .......... .......... .......... .......... 455 AAGGGTTATG GTAATTGTAA ATGCTACATG TTGAGTATCA TAGTTGATTT TATGATATTA 3711 .......... .......... .......... .......... .......... .......... 455 CTTGGTATAT ACTGTTTTCT ATTTTGAGTT GGCCGATGAT ACCTACTCAG TACTTGTGTT 3651 .......... .......... .......... .......... .......... .......... 455 TGTACCGACC CCCTACTTTT ATGTTTTCTT TTTTGTTATT TGTGGAGTGC AGCAAACGTG 3591 .......... .......... .......... .......... .......... .......... 455 TCATCGTCTT CAACTCAACC GCAACTCTAG CCAGTCTCCA TTATTTCGGA TATCAGGGTG 3531 .......... .......... .......... .......... .......... .......... 455 AGCTAATGCT TCTAGCTTGG ACTGGATCTT CCTCTTCATG TCTTGATGCC TTGAAGTTCC 3471 | || ||| |||||||||| |||||||||| | |||| ||| |||||||||| |||||||| | ..C-AAAGCT TCTAGCTTGG ACTGGATCTT CTTCTTTATG TCTTGATGCC TTGAAGTTTC 512 GGCATGGACT AGCT-T-TTA CTTGTTTTAG CTTTTTAGAA TACTCTTAG- TTTAGTACTT 3414 |||||||||| | || | ||| | |||||| | |||| | |||| ||| ||||||| || GGCATGGACT AACTGTGTTA TGTATTTTAG GCTCTTAG-A TACTTCTAGA TTTAGTAATT 571 TGATCATAGA TGTTCTTGTG ATGATGACTT CCAGATTTTG GGGATAATAA TAGTTATTG 3355 || |||| |||||||||| ||||| |||| ||||||||| |||| ||||| ||||||||| CGA-AGTAGA TGTTCTTGTG ATGATAACTT CCAGATTTT- GGGA-AATAA TAGTTATTG 627 hqPGS_C06HBa0024L21.1-7-_SGN-E368629+ (3528 3355) ******************************************************************************** EST sequence 93 +strand 620 n (File: SGN-E238551+) 1 ACGCCTTTTG CTTTATGAAA CTAAAAAATA AAAATTGAAG TTTTGAAACG ATAGAGGTTT 61 AAAATTTGAA AGTCTGCTTA GAGAGTTAAG GCTTAGAAAG TTTAACTAAG ACGGAATCTT 121 AAAAGATTAA TATCTCAAAT TTGCAAAGTT TGGCTAAGTA AATCGTGATA AAAGTTCAAA 181 TAAATTTGCA AAGGGTAAAA ATAAAAATAA TCAAATAAGT TAGTCGTTGG AAAACCGTAT 241 TTAACGGAGT GTCTTAGGTG CCTTAAACAC CTTCCTAAGA CGCTAATAAG AATCCCGAAT 301 CCTAAAAAAT ATTTTCAAAA CGACTTTTCT GTTTAAATTG TTTTGAGAAT GAGTTTTCTT 361 GATTTTTCTT AAAAATTAAG TGGCGACTCC TAAAGTCGAA AAATACTTTA AAATAAAACA 421 AACTCTTTTC GAAAAATCAC CTTTTTTCGA TAAAACAAAG CTTCTAGCTT GGACTGGATC 481 TTCTTCTTCA TGTCTTGATG CCTTGAAGTT CCGGCATGGA CTAGCTGTTT ATGTATTTTA 541 GCTTCTTAGA TACTCTTAGA TTTAGTAATT CGAAGTAGAT GTTCTTGTGA TGATAACTTC 601 CAGATTTTGG GAAATAATAG Predicted gene structure (within gDNA segment 8713 to 2672): Exon 1 4730 4726 ( 5 n); cDNA 451 455 ( 5 n); score: 1.000 Intron 1 4725 3529 (1197 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.94) Exon 2 3528 3361 ( 168 n); cDNA 456 620 ( 165 n); score: 0.875 MATCH C06HBa0024L21.1-7- SGN-E238551+ 0.875 173 0.279 C PGS_C06HBa0024L21.1-7-_SGN-E238551+ (4730 4726,3528 3361) Alignment (genomic DNA sequence = upper lines): TAAAAGAAGG AGGGTTTGAA TAAGAAAAAG AAAAGAACAG AAAGAGAGAG AAGGAGAATC 4671 ||||| TAAAA..... .......... .......... .......... .......... .......... 455 GATAGAGAGA GATGAACGAA GAGGAAAAAC ACAAGGCTTT GGGAAATTCT TGCTTGATCA 4611 .......... .......... .......... .......... .......... .......... 455 CTAGTCTTCG GTGGAGGTAG GTTATGGTTT CTCTTACGAT ATTCGTAGTA AACTCTTAAT 4551 .......... .......... .......... .......... .......... .......... 455 ACCGAATGAT ATGTATTGAT AATATTGTAA ACCCTGCTAT GTGCTTACTT GTATGCTTGC 4491 .......... .......... .......... .......... .......... .......... 455 ATGAATGTAA TTATATAATT GTGATTATAT AAGCATGATG AAGTTATTGA AACCCAAATC 4431 .......... .......... .......... .......... .......... .......... 455 TTGAAAAATC CTAATCTCTT TGTTAATAAT GAGGCCTTGG TATAAAAGAA GGCGTGATGA 4371 .......... .......... .......... .......... .......... .......... 455 ACTAAAACTA TGAGATTGAT GATGTCTTGG TAAGAAAGAA GGCTTGATGA ATTGATAGAA 4311 .......... .......... .......... .......... .......... .......... 455 GGAGATTAGG GGATCGGGTG CCACGTTCCG GTACCAGGAT AGTATATGAG GATCGGAGTG 4251 .......... .......... .......... .......... .......... .......... 455 TCACGTTCCG ACACCAGGAT AGAATATGGA TCGGGTGCCA CGTTTCGGTA CCAAGATAGA 4191 .......... .......... .......... .......... .......... .......... 455 ATATGAGGAT CGGAGTGTCA CGTTCCGACA CTAGGATAGA ATATGGATCG GGTGCCACAT 4131 .......... .......... .......... .......... .......... .......... 455 TTCGGTACCA GGATAGTATA TGAGGATCGG AGTGTCACGT TCCGACACCA GGATAGAATA 4071 .......... .......... .......... .......... .......... .......... 455 TGGATCGGGT GCCACGTTCC GGTACCAGGA TAGTATATGA GGATCGGAGT GTCACGTTCC 4011 .......... .......... .......... .......... .......... .......... 455 GACACCAGAA TAGAATATGG ATCGGGTGCC ACGTTCGGTA CCAGGATAGT ATATGAGGAT 3951 .......... .......... .......... .......... .......... .......... 455 CGGGTGCCAC GTTCCGGTAC CAGGATAGTA TATGAGGAGC GGAGTGTCAC GTACCGACAC 3891 .......... .......... .......... .......... .......... .......... 455 GAGAGGAATA AAGATAATGA ATCTTGAAAG ATGTTAATAT ACTCAATCTA ATGAACCTAA 3831 .......... .......... .......... .......... .......... .......... 455 ATCCCAAATG AGTATGATGA GGAGGCGTGA GTCCTCATTG ATGAGCTTGG TGTTGTAACC 3771 .......... .......... .......... .......... .......... .......... 455 AAGGGTTATG GTAATTGTAA ATGCTACATG TTGAGTATCA TAGTTGATTT TATGATATTA 3711 .......... .......... .......... .......... .......... .......... 455 CTTGGTATAT ACTGTTTTCT ATTTTGAGTT GGCCGATGAT ACCTACTCAG TACTTGTGTT 3651 .......... .......... .......... .......... .......... .......... 455 TGTACCGACC CCCTACTTTT ATGTTTTCTT TTTTGTTATT TGTGGAGTGC AGCAAACGTG 3591 .......... .......... .......... .......... .......... .......... 455 TCATCGTCTT CAACTCAACC GCAACTCTAG CCAGTCTCCA TTATTTCGGA TATCAGGGTG 3531 .......... .......... .......... .......... .......... .......... 455 AGCTAATGCT TCTAGCTTGG ACTGGATCTT CCTCTTCATG TCTTGATGCC TTGAAGTTCC 3471 | || ||| |||||||||| |||||||||| | |||||||| |||||||||| |||||||||| ..C-AAAGCT TCTAGCTTGG ACTGGATCTT CTTCTTCATG TCTTGATGCC TTGAAGTTCC 512 GGCATGGACT AGCT-TTTAC TTGTTTTAGC TTTTTAGAAT ACTCTTAG-T TTAGTACTTT 3413 |||||||||| |||| |||| | ||||||| || |||| || |||||||| | |||||| || GGCATGGACT AGCTGTTTAT GTATTTTAGC TTCTTAG-AT ACTCTTAGAT TTAGTAATTC 571 GATCATAGAT GTTCTTGTGA TGATGACTTC CAGATTTTGG GGATAATAAT AG 3361 || ||||| |||||||||| |||| ||||| |||||||| | ||| |||||| || GA-AGTAGAT GTTCTTGTGA TGATAACTTC CAGATTTT-G GGA-AATAAT AG 620 hqPGS_C06HBa0024L21.1-7-_SGN-E238551+ (3528 3361) ******************************************************************************** EST sequence 109 +strand 717 n (File: SGN-E349726+) 1 TAGTCTTCGG TGGAGGTAGG TTATTGTTTC TCTTACGATA TTCGTAGTAA ACTCTTAATA 61 GAGAATGATA TGTATTGATA ATATTGTAAA CCCTGCTATG TGCTTAATTG TATGCTTGCA 121 TGAATGTAAC TATATAATTG TTATTATATA AGCATGATGA AGTTATTGAA TCCCAAATCT 181 TGTAAAAACC TAATCTCTTT TTAATGATGA TGCCTTGGTA AGGGAGAAGG CTTGATGAAC 241 TAAAGTAATG AGATTGATGA TGCCTTGGTA AGGGAGAAGG CTTGATGAAT TGATAGAATG 301 AGATTAGGGG ATCGGGTGTC ACGAACTGAC ACGTAGAATT AGGGGATCGG GTGTCACAAA 361 CCGACACGTA GATTAAGGGA TCAGGTGTCA CGAACCAACA CATAGATTAG GGGATCGGGT 421 GTCACGAACC GACACGTAGA TTTAGGGGAT CGGGTGTCAC GAACCGACAC GTAGATTTAG 481 GGGATCGGGT GTCACGAACC GACACGTAGA TTTAGGGGAT CAGGTGTCAC GAACCGACAC 541 GTAGATTTAG GGGATCGGAG TGTCACGTTC CGACACGTAG ATTTAGGGGA TCAGAGTATC 601 ACGTACCGAC ACAAGAAGAT TAATGAATAT GANGGAGCGG AATGTCACGT ACCGACACAA 661 GAGAAATAAA GACAATGAAT CTTGAAAGAT GTTATATACT CAATCTAATG AACATAA Predicted gene structure (within gDNA segment 5209 to 3185): Exon 1 4609 3959 ( 651 n); cDNA 1 620 ( 620 n); score: 0.786 Intron 1 3958 3928 ( 31 n); Pd: 0.000 (s: 0.52), Pa: 0.000 (s: 0.81) Exon 2 3927 3831 ( 97 n); cDNA 621 717 ( 97 n); score: 0.871 MATCH C06HBa0024L21.1-7- SGN-E349726+ 0.797 748 1.043 C PGS_C06HBa0024L21.1-7-_SGN-E349726+ (4609 3959,3927 3831) Alignment (genomic DNA sequence = upper lines): TAGTCTTCGG TGGAGGTAGG TTATGGTTTC TCTTACGATA TTCGTAGTAA ACTCTTAATA 4550 |||||||||| |||||||||| |||| ||||| |||||||||| |||||||||| |||||||||| TAGTCTTCGG TGGAGGTAGG TTATTGTTTC TCTTACGATA TTCGTAGTAA ACTCTTAATA 60 CCGAATGATA TGTATTGATA ATATTGTAAA CCCTGCTATG TGCTTACTTG TATGCTTGCA 4490 |||||||| |||||||||| |||||||||| |||||||||| |||||| ||| |||||||||| GAGAATGATA TGTATTGATA ATATTGTAAA CCCTGCTATG TGCTTAATTG TATGCTTGCA 120 TGAATGTAAT TATATAATTG TGATTATATA AGCATGATGA AGTTATTGAA ACCCAAATCT 4430 ||||||||| |||||||||| | |||||||| |||||||||| |||||||||| ||||||||| TGAATGTAAC TATATAATTG TTATTATATA AGCATGATGA AGTTATTGAA TCCCAAATCT 180 TGAAAAATCC TAATCTCTTT GTTAATAATG AGGCCTTGGT ATAAAAGAAG GCGTGATGAA 4370 || |||| || |||||||||| ||||| ||| | |||||||| | ||||| || ||||||| TGTAAAAACC TAATCTCTTT -TTAATGATG ATGCCTTGGT AAGGGAGAAG GCTTGATGAA 239 CTAAAACTAT GAGATTGATG ATGTCTTGGT AAGAAAGAAG GCTTGATGAA TTGATAGAAG 4310 ||||| || |||||||||| ||| |||||| ||| ||||| |||||||||| ||||||||| CTAAAGTAAT GAGATTGATG ATGCCTTGGT AAGGGAGAAG GCTTGATGAA TTGATAGAAT 299 GAGATTAGGG GATCGGGTGC CACGTTCCGG TACCAGGATA GTATATGAGG ATCGGAGTGT 4250 |||||||||| ||||||||| |||| | | | || | || | || | || ||||| |||| GAGATTAGGG GATCGGGTGT CACG-AACTG -A-CACG-TA GAATTAGGGG ATCGG-GTGT 354 CACGTTCCGA CACCAGGATA GAATATGGAT CGGGTGCCAC GTTTCGGTAC CAAGATAGAA 4190 ||| |||| || | | | | | | |||| | |||| ||| | | | | | ||||| CACAAACCGA CA-C-GTAGA TTA-AGGGAT CAGGTGTCAC G-AAC--CAA C-ACATAGAT 407 TATGAGGATC GGAGTGTCAC GTTCCGACAC TAGGATAGAA TATGGATCGG GTGCCACATT 4130 || | ||||| || ||||||| | ||||||| ||| | ||||||| ||| ||| TA-GGGGATC GG-GTGTCAC GAACCGACAC GTAGAT-TTA -GGGGATCGG GTGTCAC-GA 462 TCGGTACCAG GATAGTATAT GAGGATCGGA GTGTCACGTT CCGACACCAG GATAGAATAT 4070 | | | || | ||| | | ||||||| |||||||| ||||||| ||| | ACCG-A-CAC G-TAGATTTA GGGGATCGG- GTGTCACGAA CCGACACGTA GATTTAG--G 516 GGATCGGGTG CCACGTTCCG GTACCAGGAT AGTATATGAG GATCGGAGTG TCACGTTCCG 4010 ||||| |||| |||| || | | || | | || | | | |||||||||| |||||||||| GGATCAGGTG TCACGAACC- G-A-CACG-T AGATTTAGGG GATCGGAGTG TCACGTTCCG 572 ACACCAGAAT AGAATATGGA TC-GGGTGCC ACGTTCGGTA CCAGGATAGT ATATGAGGAT 3951 ||| | | | | ||| || | || | |||| | | || || || || ACA-C-GTAG ATTTAGGGGA TCAGAGTATC ACGTACCGAC ACAAGA-AG- AT........ 620 CGGGTGCCAC GTTCCGGTAC CAGGATAGTA TATGA-GGAG CGGAGTGTCA CGTACCGACA 3892 | | | ||||| |||| |||| ||||| |||||||||| .......... .......... ...TAATGAA TATGANGGAG CGGAATGTCA CGTACCGACA 657 CGAGAGGAAT AAAGATAATG AATCTTGAAA GATGTTAATA TACTCAATCT AATGAACCTA 3832 | |||| ||| ||||| |||| |||||||||| |||||| ||| |||||||||| ||||||| || CAAGAGAAAT AAAGACAATG AATCTTGAAA GATGTT-ATA TACTCAATCT AATGAACATA 716 A 3831 | A 717 hqPGS_C06HBa0024L21.1-7-_SGN-E349726+ (4609 3959,3927 3831) ******************************************************************************** EST sequence 3 -strand 434 n (File: SGN-E222578-) 1 AAAAAAAAAA AAAAAAACTC GAGACTAGCA AGCCTCATCA CTGAAACTCC ATCTTGAAGC 61 TGGTAACACT CGAAGCTCTG CAAGCAAGTT TCCATCTCGA AGCCTTGAAG AAAGTCCCCA 121 TCTAGAAAGT TGTGGAGTGC AGCAAACGTG CCGTCATCTT CGACTCAACA GTAACTCAAG 181 CCAGTCTTCG TCACACCGGA TCTTCAGGGT GAGCTAACGC GTCTAGCTTG GACTGGATCT 241 TCTCCTTCAT GTCTTGATGC CTTGAACCTC CGGCATGGAC TAGCTTCTTA TGTATTTTTA 301 GCTTTTAGAA ACTCTTAGAA TTAGTAGTTT AAAGTAGATG TTCTTGTGAT GATGACTTCC 361 AGGTTTTGGG AATAATAGAT GTTGAATATT GATAGTTATT GAATTGGTTT TTATTAAAAA 421 AAAAAAAAAA AAAA Predicted gene structure (within gDNA segment 6340 to 1376): Exon 1 3611 3365 ( 247 n); cDNA 130 377 ( 248 n); score: 0.826 PPA cDNA 416 434 MATCH C06HBa0024L21.1-7- SGN-E222578- 0.826 247 0.569 C PGS_C06HBa0024L21.1-7-_SGN-E222578- (3611 3365) Alignment (genomic DNA sequence = upper lines): TTGTGGAGTG CAGCAAACGT GTCATCGTCT TCAACTCAAC CGCAACTCTA GCCAGTCTCC 3552 |||||||||| |||||||||| | | || ||| || ||||||| | ||||| | |||||||| | TTGTGGAGTG CAGCAAACGT GCCGTCATCT TCGACTCAAC AGTAACTCAA GCCAGTCTTC 189 ATTATTTCGG ATAT-CAGGG TGAGCTAATG CTTCTAGCTT GGACTGGATC TTCCTCTTCA 3493 | | ||| || | ||||| |||||||| | | |||||||| |||||||||| ||| ||||| GTCACACCGG ATCTTCAGGG TGAGCTAACG CGTCTAGCTT GGACTGGATC TTCTCCTTCA 249 TGTCTTGATG CCTTGAAGTT CCGGCATGGA CTAGCTT-TT A-CTTGTTTT AGCTTTTTAG 3435 |||||||||| ||||||| | |||||||||| ||||||| || | | |||| ||| |||||| TGTCTTGATG CCTTGAACCT CCGGCATGGA CTAGCTTCTT ATGTATTTTT AGC-TTTTAG 308 AATACTCTTA G-TTTAGTAC TTTGATCATA GATGTTCTTG TGATGATGAC TTCCAGATTT 3376 || ||||||| | |||||| ||| | || |||||||||| |||||||||| |||||| ||| AA-ACTCTTA GAATTAGTAG TTT-AAAGTA GATGTTCTTG TGATGATGAC TTCCAGGTTT 366 TGGGGATAAT A 3365 |||| ||||| | TGGGAATAAT A 377 hqPGS_C06HBa0024L21.1-7-_SGN-E222578- (3611 3365) ******************************************************************************** EST sequence 107 +strand 725 n (File: SGN-E546548+) 1 GCAAAATAGG ATTCCTCTAC ACGTTTTAGG GGTCGTTTTG GACTATTCTT TCCTTAATTA 61 TAAAGATTGA GGGTTAATAT TAATAGGTCT AATTACTTGG GGGTTAAAAG AGGTAACCTT 121 AAGTTAATTA GTGGGTTTTA TTGTCCTCCT TTACACTTAA TTATACTTTT AATTAGGGTA 181 AAAAGAAGGA GGGTTTGAAT AAAACAAAAC AAAAGAAAAG AACAGAAAGA GAGGAGAAAC 241 GAACGAGTAG AGAGAGAGAA ACGAAGAGGA TAGCAAGGAT TTTGAGAAGA TAGCTTGTTG 301 ATTCAATTCT TCGGTGGAGG TAGGTTATGG TTTATGTTAC GATATTCGTA GTGAACTCTT 361 AATAGTGAAT ATTATGTGTT GATAGTATTG TAAACCCTGC TATGTGCTTA AGTTGTATGC 421 TTGCATGATT ATGATTATGA AATTGCGATG AATTAACAAA GCATGATGAA GCAATTGAAT 481 CCCAAATCTT GAAAGAACCC TAATTCGCTT GATATATTAT ATAATGAGAA TGATGATGCC 541 TTAGTATGAA AGAAGGCTTG ATAAATTATA TAATGAGAAT GATGATGCCT TAGTGTAAAA 601 GAAGGCTTGA TGGATTAGGG GATCGGGTGC CACGTTCCGG TACCAGGATA GAATGAATAT 661 GAGGATCGGA GTGTCACGTT CCGACACCAG GATAGAATAT GGATCGGGTG CCACGTTCCG 721 GTACC Predicted gene structure (within gDNA segment 10949 to 3295): Exon 1 4901 4413 ( 489 n); cDNA 9 506 ( 498 n); score: 0.757 Intron 1 4412 4380 ( 33 n); Pd: 0.000 (s: 0.83), Pa: 0.486 (s: 0.76) Exon 2 4379 4226 ( 154 n); cDNA 507 654 ( 148 n); score: 0.692 Intron 2 4225 4116 ( 110 n); Pd: 0.000 (s: 0.78), Pa: 0.000 (s: 0.98) Exon 3 4115 4045 ( 71 n); cDNA 655 725 ( 71 n); score: 0.986 MATCH C06HBa0024L21.1-7- SGN-E546548+ 0.765 714 0.985 C PGS_C06HBa0024L21.1-7-_SGN-E546548+ (4901 4413,4379 4226,4115 4045) Alignment (genomic DNA sequence = upper lines): GGATTTCTGT TAAGTAATTT AAGGGGTGTT TTGGACTATT CCAGCTTTAT TTATAAAGTT 4842 ||||| || || ||| | ||| ||| |||||||||| | | ||| |||||||| | GGATTCCT-C TACACGTTTT AGGGGTCGTT TTGGACTATT CTTTCCTTAA TTATAAAGAT 67 AGTGGGTTTA TGTTAATAAG TCTAATTACT TGGGTGTTAA AAGAGGTAAC CTTGAGTAAA 4782 | ||||| | | |||||| | |||||||||| |||| ||||| |||||||||| ||| ||| || TGAGGGTTAA TATTAATAGG TCTAATTACT TGGGGGTTAA AAGAGGTAAC CTTAAGTTAA 127 TTAGTGGGTT ATTATTGCCA TCTTTTATTC TTAATTATA- TGCTAATTAG GGT-AAAAGA 4724 |||||||||| |||||| | || |||| | ||||||||| | ||||||| ||| |||||| TTAGTGGGTT -TTATTGTCC TCCTTTACAC TTAATTATAC TTTTAATTAG GGTAAAAAGA 186 AGGAGGGTTT GAATAAGA-A AAAGAAAAGA ACAGAA-AGA GAGAGAAG-G AGA--ATCGA 4669 |||||||||| |||||| | | ||| |||||| | |||| ||| ||||| | | | | | ||| AGGAGGGTTT GAATAAAACA AAACAAAAGA AAAGAACAGA AAGAGAGGAG AAACGAACGA 246 -TAGAGAGAG ATGAACGAAG AGGAAAAACA CAAGGCTTTG GGAA-AT-TC TTGCTTGATC 4612 ||||||||| | ||||||| ||| | | || | | |||| ||| || | ||| ||||| GTAGAGAGAG AGAAACGAAG AGG-ATAGCA -AGGATTTTG AGAAGATAGC TTG-TTGAT- 302 ACTAGTCTTC GGTGGAGGTA GGTTATGGTT TCTCTTACGA TATTCGTAGT AAACTCTTAA 4552 | | ||||| |||||||||| |||||||||| | | |||||| |||||||||| ||||||||| TCAATTCTTC GGTGGAGGTA GGTTATGGTT TATGTTACGA TATTCGTAGT GAACTCTTAA 362 TACCGAATGA TATGTATTGA TAATATTGTA AACCCTGCTA TGTGCTT-AC TTGTATGCTT 4493 || |||| ||||| |||| || ||||||| |||||||||| ||||||| | |||||||||| TAGTGAATAT TATGTGTTGA TAGTATTGTA AACCCTGCTA TGTGCTTAAG TTGTATGCTT 422 GCATGAATGT AATTATATAA TT--G-TG-A TTATATAAGC ATGATGAAGT TATTGAAACC 4437 |||||| | | ||||| || || | || | ||| |||| ||||||||| |||||| || GCATGATTAT GATTATGAAA TTGCGATGAA TTAACAAAGC ATGATGAAGC AATTGAATCC 482 CAAATCTTGA AA-AATCCTA ATCTCTTTGT TAATAATGAG GCCTTGGTAT AAAAGAAGGC 4378 |||||||||| || || |||| || || || CAAATCTTGA AAGAACCCTA AT-TC..... .......... .......... ........GC 508 GTGATGAACT AAAACTATGA GATTGATGAT GTCTTGGTAA GAAAGAAGGC TTGATGAATT 4318 |||| | | | | |||| || ||||||| | ||| ||| |||||||||| ||||| |||| TTGAT-ATAT TATATAATGA GAATGATGAT GCCTTAGTAT GAAAGAAGGC TTGATAAATT 567 GATAGAAGGA GATTAGGGGA TCGGGTGCCA CGTTCCGGTA -CCAGGATAG TATATGAGGA 4259 ||| || || || | | || | | | || | | | ||| | || | ||| -ATATAATGA GAAT-GATGA T-GCCT-TAG TGTAAAAGAA GGCTTGAT-G GATTAGGGGA 622 TCGGAGTGTC ACGTTCCGAC ACCAGGATAG AATATGGATC GGGTGCCACG TTTCGGTACC 4199 |||| ||| | |||||||| |||||||||| ||| TCGG-GTGCC ACGTTCCGGT ACCAGGATAG AAT....... .......... .......... 654 AAGATAGAAT ATGAGGATCG GAGTGTCACG TTCCGACACT AGGATAGAAT ATGGATCGGG 4139 .......... .......... .......... .......... .......... .......... 654 TGCCACATTT CGGTACCAGG ATAGTATATG AGGATCGGAG TGTCACGTTC CGACACCAGG 4079 | ||||| |||||||||| |||||||||| |||||||||| .......... .......... ...GAATATG AGGATCGGAG TGTCACGTTC CGACACCAGG 691 ATAGAATATG GATCGGGTGC CACGTTCCGG TACC 4045 |||||||||| |||||||||| |||||||||| |||| ATAGAATATG GATCGGGTGC CACGTTCCGG TACC 725 hqPGS_C06HBa0024L21.1-7-_SGN-E546548+ (4901 4413,4379 4226,4115 4045) ******************************************************************************** EST sequence 99 +strand 481 n (File: SGN-E246710+) 1 CACAAACCGA CATATAGATT TAGGGGATCG GAGTGTCACG TACCGACACA AGAGGATTAA 61 TGAATATTGA GGGAGCGGAG TGTCACGTAC CGACACAAGA GAAATAAAGA TAATGAATCT 121 TGAAAGATGT TAATATACTC AATCTAATGA ACATGATTCC CAAATGAGTA TGGTATTGAG 181 GCTTGAGTCC TCATGTGTGA ACTTGACGGT AATTGTTAAT GATATAGTAT TTGTTGTTGC 241 TACATGTTGA GTATCATAGT TGATTTTATG ATATTACTTG GTATATATAT TGATTTCTAT 301 TTTGAGTTGG CCGATGATAT CTACTCAGTA CCCGTGTTTT GTACTGACCC CTACTTTTAT 361 GTTCTCTTCT TGTTTATTTG TGGAGTGCAG CAAACGTGCC ATCGTGTTCA ACTCAACAGT 421 AATTCAAGCC AGTCTTACTA CATCGGAAAT TCAGGGTGAG CTAATGCTTC TAGCTTGGAC 481 T Predicted gene structure (within gDNA segment 5225 to 2898): Exon 1 3914 3508 ( 407 n); cDNA 73 481 ( 409 n); score: 0.840 MATCH C06HBa0024L21.1-7- SGN-E246710+ 0.840 407 0.846 C PGS_C06HBa0024L21.1-7-_SGN-E246710+ (3914 3508) Alignment (genomic DNA sequence = upper lines): GAGCGGAGTG TCACGTACCG ACACGAGAGG AATAAAGATA ATGAATCTTG AAAGATGTTA 3855 |||||||||| |||||||||| |||| |||| |||||||||| |||||||||| |||||||||| GAGCGGAGTG TCACGTACCG ACACAAGAGA AATAAAGATA ATGAATCTTG AAAGATGTTA 132 ATATACTCAA TCTAATGAAC CTAAATCCCA AATGAGTATG ATGAGGAGGC GTGAGTCCTC 3795 |||||||||| |||||||||| | | ||||| |||||||||| | ||||| ||||||||| ATATACTCAA TCTAATGAAC ATGATTCCCA AATGAGTATG GTATTGAGGC TTGAGTCCTC 192 ATTGATGAGC TTGGTGTTGT AACCAAGGGT TATGGTAATT GTAAATGCTA CATGTTGAGT 3735 || ||| | ||| | | | | ||| ||| || || ||||| |||||||||| ATGTGTGAAC TTGACGGTAA TTGTTAATGA TATAGTATTT GTTGTTGCTA CATGTTGAGT 252 ATCATAGTTG ATTTTATGAT ATTACTTGG- -TATATACTG TTTTCTATTT TGAGTTGGCC 3677 |||||||||| |||||||||| ||||||||| |||||| || ||||||||| |||||||||| ATCATAGTTG ATTTTATGAT ATTACTTGGT ATATATATTG ATTTCTATTT TGAGTTGGCC 312 GATGATACCT ACTCAGTACT TGTG-TTTGT ACCGACCCCC TACTTTTATG TTTTCTTTTT 3618 ||||||| || ||||||||| ||| ||||| || || |||| |||||||||| || |||| || GATGATATCT ACTCAGTACC CGTGTTTTGT ACTGA-CCCC TACTTTTATG TTCTCTTCTT 371 TGTTATTTGT GGAGTGCAGC AAACGTGTCA TCGTCTTCAA CTCAACCGCA ACTCTAGCCA 3558 |||||||| |||||||||| ||||||| || |||| ||||| |||||| | | | || ||||| GTTTATTTGT GGAGTGCAGC AAACGTGCCA TCGTGTTCAA CTCAACAGTA ATTCAAGCCA 431 GTCTCCATTA TTTCGGATA- TCAGGGTGAG CTAATGCTTC TAGCTTGGAC T 3508 |||| | || ||||| | |||||||||| |||||||||| |||||||||| | GTCT-TACTA CATCGGAAAT TCAGGGTGAG CTAATGCTTC TAGCTTGGAC T 481 hqPGS_C06HBa0024L21.1-7-_SGN-E246710+ (3914 3508) ******************************************************************************** EST sequence 110 +strand 236 n (File: SGN-E209683+) 1 TAATGAACTA AATTCCCAAA TGAGTATGAT GAGGAGGTGT GAGTCCTCAT TGATGTGCTT 61 GGTGTTGTAA CCAAGGGTTA TGGTAACTAT AAATGCTGCA TGTTAAGGAT ATTAGTTGAT 121 TTTATGATAT TGCTTAATAC ATACTGTTCC CTATTTTGAG TTGGCCGATG ATATCTACTC 181 AGTACCCGTG GTTTGTACTG ACCCCTACTT TTATGTTTAT CTTCTTGTTA TTTGTG Predicted gene structure (within gDNA segment 4559 to 1647): Exon 1 3842 3607 ( 236 n); cDNA 1 236 ( 236 n); score: 0.875 MATCH C06HBa0024L21.1-7- SGN-E209683+ 0.875 236 1.000 C PGS_C06HBa0024L21.1-7-_SGN-E209683+ (3842 3607) Alignment (genomic DNA sequence = upper lines): TAATGAACCT AAATCCCAAA TGAGTATGAT GAGGAGGCGT GAGTCCTCAT TGATGAGCTT 3783 |||||||| || ||||||| |||||||||| ||||||| || |||||||||| ||||| |||| TAATGAACTA AATTCCCAAA TGAGTATGAT GAGGAGGTGT GAGTCCTCAT TGATGTGCTT 60 GGTGTTGTAA CCAAGGGTTA TGGTAATTGT AAATGCTACA TGTTGAGTAT CATAGTTGAT 3723 |||||||||| |||||||||| |||||| | | ||||||| || |||| || || |||||||| GGTGTTGTAA CCAAGGGTTA TGGTAACTAT AAATGCTGCA TGTTAAGGAT ATTAGTTGAT 120 TTTATGATAT TACTTGGTAT ATACTGTTTT CTATTTTGAG TTGGCCGATG ATACCTACTC 3663 |||||||||| | ||| || |||||||| |||||||||| |||||||||| ||| |||||| TTTATGATAT TGCTTAATAC ATACTGTTCC CTATTTTGAG TTGGCCGATG ATATCTACTC 180 AGTACTTGT- GTTTGTACCG ACCCCCTACT TTTATGTTTT CTTTTTTGTT ATTTGTG 3607 ||||| || |||||||| | | |||||||| ||||||||| || ||||| ||||||| AGTACCCGTG GTTTGTACTG A-CCCCTACT TTTATGTTTA TCTTCTTGTT ATTTGTG 236 hqPGS_C06HBa0024L21.1-7-_SGN-E209683+ (3842 3607) ******************************************************************************** EST sequence 52 -strand 337 n (File: SGN-E357033-) 1 GGATAGCGTT CATGAAACTG TCATGTAGAT TTAGGGGATC GGAGTGTCAT GTGTTCACAC 61 AAGAGGATTA ATGAATATGA GGGAGCGGAA TGTCATGTTC CGTCACAAGA GAAATAAAGA 121 TAATGAATCT TGAAAGATGT TAATATACTA AATCTAATGA ACATGATTCC CAAATGAGTA 181 TGGTATTGAG GCTTGAGTCC TCATGTGTGA ACGTGACGGT AATTGTTAAT GATATAGTGC 241 TTGTTGTTGC TACATGTTGA GTATCATAGT TGATTTTATG ATAATNCTTG ATATATATTG 301 ATTTCTATTT TGAGTTGGGC GATGATATCT ATTCAGT Predicted gene structure (within gDNA segment 5614 to 2889): Exon 1 3914 3660 ( 255 n); cDNA 83 337 ( 255 n); score: 0.816 MATCH C06HBa0024L21.1-7- SGN-E357033- 0.816 255 0.757 C PGS_C06HBa0024L21.1-7-_SGN-E357033- (3914 3660) Alignment (genomic DNA sequence = upper lines): GAGCGGAGTG TCACGTACCG ACACGAGAGG AATAAAGATA ATGAATCTTG AAAGATGTTA 3855 ||||||| || ||| || ||| ||| |||| |||||||||| |||||||||| |||||||||| GAGCGGAATG TCATGTTCCG TCACAAGAGA AATAAAGATA ATGAATCTTG AAAGATGTTA 142 ATATACTCAA TCTAATGAAC CTAAATCCCA AATGAGTATG ATGAGGAGGC GTGAGTCCTC 3795 ||||||| || |||||||||| | | ||||| |||||||||| | ||||| ||||||||| ATATACTAAA TCTAATGAAC ATGATTCCCA AATGAGTATG GTATTGAGGC TTGAGTCCTC 202 ATTGATGAGC TTGGTGTTGT AACCAAGGGT TATGGTAATT GTAAATGCTA CATGTTGAGT 3735 || ||| | || | | | | ||| || || || ||||| |||||||||| ATGTGTGAAC GTGACGGTAA TTGTTAATGA TATAGTGCTT GTTGTTGCTA CATGTTGAGT 262 ATCATAGTTG ATTTTATGAT ATTACTTGGT ATATACTGTT TTCTATTTTG AGTTGGCCGA 3675 |||||||||| |||||||||| | | |||| | ||||| || | |||||||||| |||||| ||| ATCATAGTTG ATTTTATGAT AATNCTTGAT ATATATTGAT TTCTATTTTG AGTTGGGCGA 322 TGATACCTAC TCAGT 3660 ||||| ||| ||||| TGATATCTAT TCAGT 337 hqPGS_C06HBa0024L21.1-7-_SGN-E357033- (3914 3660) ******************************************************************************** EST sequence 105 +strand 239 n (File: SGN-E391780+) 1 TCACAAACCG ACATATAGAT TTAGGGGATC GGAGTGTCAC GTACCGACAC AAGAGGATTA 61 ATGAATATTG AGGGAGCGGA GTGTCACGTA CCGACACAAG AGAAATAAAG ATAATGAATC 121 TTGAAAGATG TTAATATACT CAATCTAATG AACATGATTC CCAAATGAGT ATGGTATTGA 181 GGCTTGAGTC CTCATGTGTG AACTTGACGG TAATTGTTAA TGATATAGTA TTTGTTGAT Predicted gene structure (within gDNA segment 5235 to 2365): Exon 1 3914 3749 ( 166 n); cDNA 74 239 ( 166 n); score: 0.813 MATCH C06HBa0024L21.1-7- SGN-E391780+ 0.813 166 0.695 C PGS_C06HBa0024L21.1-7-_SGN-E391780+ (3914 3749) Alignment (genomic DNA sequence = upper lines): GAGCGGAGTG TCACGTACCG ACACGAGAGG AATAAAGATA ATGAATCTTG AAAGATGTTA 3855 |||||||||| |||||||||| |||| |||| |||||||||| |||||||||| |||||||||| GAGCGGAGTG TCACGTACCG ACACAAGAGA AATAAAGATA ATGAATCTTG AAAGATGTTA 133 ATATACTCAA TCTAATGAAC CTAAATCCCA AATGAGTATG ATGAGGAGGC GTGAGTCCTC 3795 |||||||||| |||||||||| | | ||||| |||||||||| | ||||| ||||||||| ATATACTCAA TCTAATGAAC ATGATTCCCA AATGAGTATG GTATTGAGGC TTGAGTCCTC 193 ATTGATGAGC TTGGTGTTGT AACCAAGGGT TATGGTAATT GTAAAT 3749 || ||| | ||| | | | | ||| ||| || || || ATGTGTGAAC TTGACGGTAA TTGTTAATGA TATAGTATTT GTTGAT 239 hqPGS_C06HBa0024L21.1-7-_SGN-E391780+ (3914 3749) ******************************************************************************** EST sequence 101 +strand 548 n (File: SGN-E356257+) 1 AAAACACTTA GAAAATCTGA AATTGGGTAC TGAAAATCGA CTCTCTGAAC TTCGTGACGG 61 AATGACAGGA CGGACCATCA CAGGCGTGAC GGACCGTCAT AGATTGTTCA GTGGAAATTG 121 ACTCTCTGAC CCTTGCGACG ACCTGCAGGA CGGACCGTCA CAGTCACGAC GGCCCGTCAC 181 AGGTTGCGCA AATCCCAGGC AGAATCGGAT TTCCTTACAC GTTTTAAGGG ACGTTTTTGG 241 ACTATTCTTT CCTTAATTAT AGATTTCGTG GGTTTATATT AATAACTCAA ATTCTTGGGG 301 TTAAAAGAGG TAACCCTAAG TTAATTAGTG GGGTATTATT GCCATCTTTT ATTCTTAATT 361 ATATGTTAAT TTGGGGTAAA AGAAAGAGGG TTTTGAAACG AGACCCTGCG ATGGTCCGTC 421 GTGCCCATGA CGGTCCGTCG TGGGGTCCGT CGCTTCTGCC AGTTTTTCCA GAAATAAAGT 481 CTGCTGCTCA AAACGACTAA ACGGGTCGTT ACATTATTTG ACTCTATCAC TTTAATTTTC 541 TAGTTAAC Predicted gene structure (within gDNA segment 5840 to 1701): Exon 1 5057 5003 ( 55 n); cDNA 112 165 ( 54 n); score: 0.764 Intron 1 5002 4942 ( 61 n); Pd: 0.000 (s: 0.76), Pa: 0.000 (s: 0.77) Exon 2 4941 4713 ( 229 n); cDNA 166 394 ( 229 n); score: 0.806 Intron 2 4712 2539 (2174 n); Pd: 0.000 (s: 0.87), Pa: 0.996 (s: 0) Exon 3 2538 2533 ( 6 n); cDNA 395 400 ( 6 n); score: 0.833 MATCH C06HBa0024L21.1-7- SGN-E356257+ 0.798 290 0.529 C PGS_C06HBa0024L21.1-7-_SGN-E356257+ (5057 5003,4941 4713,2538 2533) Alignment (genomic DNA sequence = upper lines): TGAAAATCGA CTCTCTGAAC TTCGTAACGG AATGGCAGGA CGGACCGTCA CGGGCGTGAC 4998 || |||| || |||||||| | | | || | | |||||| |||||||||| | | | TGGAAATTGA CTCTCTGACC CTTGCGAC-G ACCTGCAGGA CGGACCGTCA CAGTC..... 165 GGACCGTCAC AGACTCTTTG GTGGAAATTG AGTCTCTGAA CCTTGCGATG ACCTGCAGGA 4938 | || .......... .......... .......... .......... .......... ......ACGA 169 CGGGCCGTCA CAGGTTGCG- TAATCCCAGT CTGGGTCGGA TTTCTGTTAA GTAATTTAAG 4879 ||| |||||| ||||||||| |||||||| | | ||||| |||| ||| |||||| CGGCCCGTCA CAGGTTGCGC AAATCCCAGG CAGAATCGGA TTTC-CTTAC ACGTTTTAAG 228 GGGTG-TTTT GGACTATTCC AGCTTTATTT ATAAAGTTAG TGGGTTTATG TTAATAAGTC 4820 || | |||| ||||||||| | ||| || ||| | || | ||||||||| ||||||| || GGACGTTTTT GGACTATTCT TTCCTTAATT ATAGATTTCG TGGGTTTATA TTAATAACTC 288 TAATTACTTG GGTGTTAAAA GAGGTAACCT TGAGTAAATT AGTGGGTTAT TATTGCCATC 4760 |||| |||| || ||||||| ||||||||| | ||| |||| |||||| ||| |||||||||| AAATT-CTTG GG-GTTAAAA GAGGTAACCC TAAGTTAATT AGTGGGGTAT TATTGCCATC 346 TTTTATTCTT AATTATATGC TAA-TTAGGG TAAAAGAAGG AGGGTTTGAA TAAGAAAAAG 4701 |||||||||| ||||||||| ||| || ||| |||||||| | ||||||| TTTTATTCTT AATTATATGT TAATTTGGGG TAAAAGAAAG AGGGTTTT.. .......... 394 AAAAGAACAG AAAGAGAGAG AAGGAGAATC GATAGAGAGA GATGAACGAA GAGGAAAAAC 4641 .......... .......... .......... .......... .......... .......... 394 ACAAGGCTTT GGGAAATTCT TGCTTGATCA CTAGTCTTCG GTGGAGGTAG GTTATGGTTT 4581 .......... .......... .......... .......... .......... .......... 394 CTCTTACGAT ATTCGTAGTA AACTCTTAAT ACCGAATGAT ATGTATTGAT AATATTGTAA 4521 .......... .......... .......... .......... .......... .......... 394 ACCCTGCTAT GTGCTTACTT GTATGCTTGC ATGAATGTAA TTATATAATT GTGATTATAT 4461 .......... .......... .......... .......... .......... .......... 394 AAGCATGATG AAGTTATTGA AACCCAAATC TTGAAAAATC CTAATCTCTT TGTTAATAAT 4401 .......... .......... .......... .......... .......... .......... 394 GAGGCCTTGG TATAAAAGAA GGCGTGATGA ACTAAAACTA TGAGATTGAT GATGTCTTGG 4341 .......... .......... .......... .......... .......... .......... 394 TAAGAAAGAA GGCTTGATGA ATTGATAGAA GGAGATTAGG GGATCGGGTG CCACGTTCCG 4281 .......... .......... .......... .......... .......... .......... 394 GTACCAGGAT AGTATATGAG GATCGGAGTG TCACGTTCCG ACACCAGGAT AGAATATGGA 4221 .......... .......... .......... .......... .......... .......... 394 TCGGGTGCCA CGTTTCGGTA CCAAGATAGA ATATGAGGAT CGGAGTGTCA CGTTCCGACA 4161 .......... .......... .......... .......... .......... .......... 394 CTAGGATAGA ATATGGATCG GGTGCCACAT TTCGGTACCA GGATAGTATA TGAGGATCGG 4101 .......... .......... .......... .......... .......... .......... 394 AGTGTCACGT TCCGACACCA GGATAGAATA TGGATCGGGT GCCACGTTCC GGTACCAGGA 4041 .......... .......... .......... .......... .......... .......... 394 TAGTATATGA GGATCGGAGT GTCACGTTCC GACACCAGAA TAGAATATGG ATCGGGTGCC 3981 .......... .......... .......... .......... .......... .......... 394 ACGTTCGGTA CCAGGATAGT ATATGAGGAT CGGGTGCCAC GTTCCGGTAC CAGGATAGTA 3921 .......... .......... .......... .......... .......... .......... 394 TATGAGGAGC GGAGTGTCAC GTACCGACAC GAGAGGAATA AAGATAATGA ATCTTGAAAG 3861 .......... .......... .......... .......... .......... .......... 394 ATGTTAATAT ACTCAATCTA ATGAACCTAA ATCCCAAATG AGTATGATGA GGAGGCGTGA 3801 .......... .......... .......... .......... .......... .......... 394 GTCCTCATTG ATGAGCTTGG TGTTGTAACC AAGGGTTATG GTAATTGTAA ATGCTACATG 3741 .......... .......... .......... .......... .......... .......... 394 TTGAGTATCA TAGTTGATTT TATGATATTA CTTGGTATAT ACTGTTTTCT ATTTTGAGTT 3681 .......... .......... .......... .......... .......... .......... 394 GGCCGATGAT ACCTACTCAG TACTTGTGTT TGTACCGACC CCCTACTTTT ATGTTTTCTT 3621 .......... .......... .......... .......... .......... .......... 394 TTTTGTTATT TGTGGAGTGC AGCAAACGTG TCATCGTCTT CAACTCAACC GCAACTCTAG 3561 .......... .......... .......... .......... .......... .......... 394 CCAGTCTCCA TTATTTCGGA TATCAGGGTG AGCTAATGCT TCTAGCTTGG ACTGGATCTT 3501 .......... .......... .......... .......... .......... .......... 394 CCTCTTCATG TCTTGATGCC TTGAAGTTCC GGCATGGACT AGCTTTTACT TGTTTTAGCT 3441 .......... .......... .......... .......... .......... .......... 394 TTTTAGAATA CTCTTAGTTT AGTACTTTGA TCATAGATGT TCTTGTGATG ATGACTTCCA 3381 .......... .......... .......... .......... .......... .......... 394 GATTTTGGGG ATAATAATAG TTATTGATTT TATTAATGAG TTTAAGTCTT CCGCATTACT 3321 .......... .......... .......... .......... .......... .......... 394 TTCTGTTGAT ATTATATTGA AATGTTAAGG TTTAGATTGG TTGGTTCACT CACACAGGAG 3261 .......... .......... .......... .......... .......... .......... 394 GGTAAGTGTG GGTGCCAGTC GCAGCCCGAT TTGGGTCGTG ACAAATACAT AATATGATCA 3201 .......... .......... .......... .......... .......... .......... 394 AACAACATTC ATACGCAGAA CACACATTGA TTCATACCTG TTGTTGTGCA TCTGTTGTTG 3141 .......... .......... .......... .......... .......... .......... 394 GTTGACCTAT TGACAATCTA ATCTCTTCAA TTATCAGCTT AGTTGAGTTA TCAACGTAAG 3081 .......... .......... .......... .......... .......... .......... 394 TCTTGATTTC AACCATGTGC TTGTCAACCT TATCAATGTA TAAAAATATG TTAAAATAAT 3021 .......... .......... .......... .......... .......... .......... 394 AAAATAAAAT ATAGAATAGT TTTATTAGTT AATTAAAACG TGATTTGAAC TAACATTAAC 2961 .......... .......... .......... .......... .......... .......... 394 TTTGTGATTT TTCAACTCCG CGTAACTGTT CATTAAACAG TAATAAATTT TGATATGTAT 2901 .......... .......... .......... .......... .......... .......... 394 AATGTAATAT CTAAAAACTA TTATAAGCAC AAATTTTTAT TTATACCATT GCAATTTCAG 2841 .......... .......... .......... .......... .......... .......... 394 CTTTCAACTC TACATAATTT TTTTAAAAAT CAACGCCATG TTTTTCTGAG GTTTCTCGCT 2781 .......... .......... .......... .......... .......... .......... 394 CTTCAGAATC TTGGTGACTG GAAGACTTGA TTCAAAATGG TTTCATCCGT GACATATAAC 2721 .......... .......... .......... .......... .......... .......... 394 TCTTTTTGAG TAAAAATCAT ATTTTTGAAT TTATGTTGCA GAAATGAAAA ATATGAGAAT 2661 .......... .......... .......... .......... .......... .......... 394 GTGTAATAAT TTATAATTAC TTTAATAACA TTCAATAAAG AGATTACTTG ATTGATGTAT 2601 .......... .......... .......... .......... .......... .......... 394 TTTTAATATC ATTTTTTTTA AATCATCAAA ATAAATAACG TCACTTGTTG TCTCTAGTTC 2541 .......... .......... .......... .......... .......... .......... 394 AGGATACG 2533 || ||| ..GAAACG 400 hqPGS_C06HBa0024L21.1-7-_SGN-E356257+ (5057 5003,4941 4713) ******************************************************************************** EST sequence 104 +strand 402 n (File: SGN-E357559+) 1 TAGTCTTCGG TGGAGGTAGG TTATTGTTTC TCTTACGATA TTCGTAGTAA ACTCTTAATA 61 GAGAATGATA TGTATTGATA ATATTGTAAA CCCTGCTATG TGCTTAATTG TATGCTTGCA 121 TGAATGTAAC TATATAATTG TTATTATATA AGCATGATGA AGTTATTGAA TCCCAAATCT 181 TGTAAAAACC TAATCTCTTT TTAATGATGA TGCCTTGGTA AGGGAGAAGG CTTGATGAAC 241 TAAAGTAATG AGATTGATGA TGCCTTGGTA AGGGAGAAGG CTTGATGAAT TGATAGAATG 301 AGATTAGGGG ATCGGGTGTC ACGAACTGAC ACGTAGAATT AGGGGATCGG GTGTCACAAA 361 CCGACACGTA GATTAAGGGA TCAGGTGTCA CGAACCAACA CA Predicted gene structure (within gDNA segment 5209 to 2832): Exon 1 4609 4287 ( 323 n); cDNA 1 322 ( 322 n); score: 0.923 MATCH C06HBa0024L21.1-7- SGN-E357559+ 0.923 323 0.803 C PGS_C06HBa0024L21.1-7-_SGN-E357559+ (4609 4287) Alignment (genomic DNA sequence = upper lines): TAGTCTTCGG TGGAGGTAGG TTATGGTTTC TCTTACGATA TTCGTAGTAA ACTCTTAATA 4550 |||||||||| |||||||||| |||| ||||| |||||||||| |||||||||| |||||||||| TAGTCTTCGG TGGAGGTAGG TTATTGTTTC TCTTACGATA TTCGTAGTAA ACTCTTAATA 60 CCGAATGATA TGTATTGATA ATATTGTAAA CCCTGCTATG TGCTTACTTG TATGCTTGCA 4490 |||||||| |||||||||| |||||||||| |||||||||| |||||| ||| |||||||||| GAGAATGATA TGTATTGATA ATATTGTAAA CCCTGCTATG TGCTTAATTG TATGCTTGCA 120 TGAATGTAAT TATATAATTG TGATTATATA AGCATGATGA AGTTATTGAA ACCCAAATCT 4430 ||||||||| |||||||||| | |||||||| |||||||||| |||||||||| ||||||||| TGAATGTAAC TATATAATTG TTATTATATA AGCATGATGA AGTTATTGAA TCCCAAATCT 180 TGAAAAATCC TAATCTCTTT GTTAATAATG AGGCCTTGGT ATAAAAGAAG GCGTGATGAA 4370 || |||| || |||||||||| ||||| ||| | |||||||| | ||||| || ||||||| TGTAAAAACC TAATCTCTTT -TTAATGATG ATGCCTTGGT AAGGGAGAAG GCTTGATGAA 239 CTAAAACTAT GAGATTGATG ATGTCTTGGT AAGAAAGAAG GCTTGATGAA TTGATAGAAG 4310 ||||| || |||||||||| ||| |||||| ||| ||||| |||||||||| ||||||||| CTAAAGTAAT GAGATTGATG ATGCCTTGGT AAGGGAGAAG GCTTGATGAA TTGATAGAAT 299 GAGATTAGGG GATCGGGTGC CAC 4287 |||||||||| ||||||||| ||| GAGATTAGGG GATCGGGTGT CAC 322 hqPGS_C06HBa0024L21.1-7-_SGN-E357559+ (4609 4287) ******************************************************************************** EST sequence 60 +strand 731 n (File: SGN-E578076+) 1 TTTCTCGGCC AAACGCGTCA TTTTTCTGTA GTTTTTCATA CTTCAATTTC CTTTTCATTT 61 CTTGGTTGAC CGACGAAACC CACCAACTCA CCACCTCATT CCGCCGTGGT CAGCTCGCTT 121 ACTAGGGTAT ACTCTACGTC TTCTTTAACT CATATAAGAC TCTATCTTTT GTATCTATAA 181 CTGAAGAACA AATTTGCAGT TCAACTGTTC GACGCTTTGC CCCAATTAAT CACAACGTAA 241 ATTTCTTCTG CTCTTAACCC TTGTTCAATT TCAGTGAATT ATCTATATCT CTGGTAAATT 301 GGAAGTCGGG AAACCGAAAA AAGTTGAAAT TTTTAGGGTT GTTTTGTTCT CTGTTTTGCT 361 CGTTAGGACG TTTGAATAAG AAAAATAGAA AGAACAAAGA GAAAACAGAA AAAGAAAGAG 421 AAACGAAGAG GATAGCAAGG ATTTTGAGAA GATAACTTGT TGATCGCAAT TCTTCGGTGG 481 AGGTAGGTTA TGGTTTCTCT TACGATATTC GTAGTAAACT CTTAATAGAG AATGATATGT 541 ATTGATAATA TTGTAAACCC TGCTATGTGC TTAATTGTAT GCTTGCATGA ATGTAACTAT 601 ATAATTGTGA TTATATAAGC ATGATGAAGT TATTGAATCC CAAATCTTGC AAAATCTTAA 661 TCTCTTTGTT CATAATGAGG CCTTGGTATA AAAGAAGGCG TGATGAACTA AAATAATGGG 721 ATTGATGATG C Predicted gene structure (within gDNA segment 9906 to 3574): Exon 1 4717 4347 ( 371 n); cDNA 370 730 ( 361 n); score: 0.877 MATCH C06HBa0024L21.1-7- SGN-E578076+ 0.877 371 0.508 C PGS_C06HBa0024L21.1-7-_SGN-E578076+ (4717 4347) Alignment (genomic DNA sequence = upper lines): GTTTGAATAA GAAAAAGA-A AAGAACAGAA AGAGAGAGAA GGAGAATCGA TAGAGAGAGA 4659 |||||||||| |||||| | | |||||| || ||||| | || |||| | ||| ||||| GTTTGAATAA GAAAAATAGA AAGAAC--AA AGAGA-A-AA -CAGAA---A AAGAAAGAGA 421 TGAACGAAGA GGAAAAACAC AAGGCTTTGG GAA-AT-TCT TGCTTGATCA CTAGTCTTCG 4601 |||||||| || | | || | | |||| ||| || || || |||||| | | |||||| --AACGAAGA GG-ATAGCA- AGGATTTTGA GAAGATAACT TG-TTGATCG CAATTCTTCG 476 GTGGAGGTAG GTTATGGTTT CTCTTACGAT ATTCGTAGTA AACTCTTAAT ACCGAATGAT 4541 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| | ||||||| GTGGAGGTAG GTTATGGTTT CTCTTACGAT ATTCGTAGTA AACTCTTAAT AGAGAATGAT 536 ATGTATTGAT AATATTGTAA ACCCTGCTAT GTGCTTACTT GTATGCTTGC ATGAATGTAA 4481 |||||||||| |||||||||| |||||||||| ||||||| || |||||||||| |||||||||| ATGTATTGAT AATATTGTAA ACCCTGCTAT GTGCTTAATT GTATGCTTGC ATGAATGTAA 596 TTATATAATT GTGATTATAT AAGCATGATG AAGTTATTGA AACCCAAATC TTGAAAAATC 4421 ||||||||| |||||||||| |||||||||| |||||||||| | |||||||| ||| |||||| CTATATAATT GTGATTATAT AAGCATGATG AAGTTATTGA ATCCCAAATC TTGCAAAATC 656 CTAATCTCTT TGTTAATAAT GAGGCCTTGG TATAAAAGAA GGCGTGATGA ACTAAAACTA 4361 ||||||||| |||| ||||| |||||||||| |||||||||| |||||||||| ||||||| | TTAATCTCTT TGTTCATAAT GAGGCCTTGG TATAAAAGAA GGCGTGATGA ACTAAAATAA 716 TGAGATTGAT GATG 4347 || ||||||| |||| TGGGATTGAT GATG 730 hqPGS_C06HBa0024L21.1-7-_SGN-E578076+ (4717 4347) ******************************************************************************** EST sequence 108 +strand 660 n (File: SGN-E349296+) 1 GAAAAACTGG CAGAAATGAC GGACCCCACG ACGGACCATC ATGGGCACGA CGGACCGTCG 61 CAGGGTCTCA TTTCAAAACA CTTAGGAAAT CTGAAATTGG GTACTGAAAA TCGACTCTCT 121 GAACTTCGTA ACGGAATGGC AAGACGGACC GTCACAGGCG TGATGGACCA TCACAGAGTC 181 TTCAGTGAAA ATCCAGTCTC TGAACCTTGC GACGACCTGC AGGACGGACC GTCGCAGGCA 241 CAACGGGCTG TCACAGGCTG CGTAAATCCC AGTCTGAGTC GGAATTCCTC AATTGTTTTA 301 AGGGACGTTT TTGACTATTC CTGCTTTAAT TATAAAGTTA GTGGGTTAAT GTTAATAAGT 361 CTAATTACTT GGGGGTTAAA AGAGGTAACC TTAAGTTAAT TAGTGGGTTA TTATTGCCAT 421 ATTTTATTCT TAATTATATA CTAATTAGGG TAAAAGAAAG AGGGTTTGAA TAAAGAAAAT 481 AGAAAGAACA AGAGAAAGAG AGAGAAAGTC GAACGAGAAA GAGGATCGAA CGAGAGGAAA 541 AAACACAAAG CTTGGGAAAT CACTTGCTTG ATCACGAATC TTCGGTGGAG GTAGGTTATG 601 GTTTCTCTTA CGATATTCGT AGTAAGCTCT TAATAGCGAA TAATATGTAT TGATAATATT Predicted gene structure (within gDNA segment 6580 to 3915): Exon 1 5161 4525 ( 637 n); cDNA 1 660 ( 660 n); score: 0.790 MATCH C06HBa0024L21.1-7- SGN-E349296+ 0.790 637 0.965 C PGS_C06HBa0024L21.1-7-_SGN-E349296+ (5161 4525) Alignment (genomic DNA sequence = upper lines): GAAAAACAGG CTGAGACGAC GGAACCTACG ACGGACCGTC ATGAGTACGA CGGACCGTCG 5102 ||||||| || | || | ||| ||| || ||| ||||||| || ||| | |||| |||||||||| GAAAAACTGG CAGAAATGAC GGACCCCACG ACGGACCATC ATGGGCACGA CGGACCGTCG 60 AGGGGTCTCG TTTCAAAACA CTTAGAAATT TTGAAATTGG GTACTGAAAA TCGACTCTCT 5042 ||||||| |||||||||| ||||| || | ||||||||| |||||||||| |||||||||| CAGGGTCTCA TTTCAAAACA CTTAGGAAAT CTGAAATTGG GTACTGAAAA TCGACTCTCT 120 GAACTTCGTA ACGGAATGGC AGGACGGACC GTCACGGGCG TGACGGACCG TCACAGACTC 4982 |||||||||| |||||||||| | |||||||| ||||| |||| ||| ||||| ||||||| || GAACTTCGTA ACGGAATGGC AAGACGGACC GTCACAGGCG TGATGGACCA TCACAGAGTC 180 TTTGGTGGAA ATTGAGTCTC TGAACCTT-- G-CGA--T-- ------GACC -T-GCAGG-- 4939 || ||| || || |||||| |||||||| | ||| | |||| | ||||| TTCAGTGAAA ATCCAGTCTC TGAACCTTGC GACGACCTGC AGGACGGACC GTCGCAGGCA 240 --ACGGGCCG TCACAGGTTG CGT-AATCCC AGTCTGGGTC GGATTTCTGT TAAGTAATTT 4882 |||||| | ||||||| || ||| |||||| |||||| ||| ||| ||| | || | ||| CAACGGGCTG TCACAGGCTG CGTAAATCCC AGTCTGAGTC GGAATTC-CT CAATTGTTTT 299 AAGGGGTGTT TTGGACTATT CCAGCTTTAT TTATAAAGTT AGTGGGTTTA TGTTAATAAG 4822 ||||| ||| || ||||||| || |||||| |||||||||| |||||||| | |||||||||| AAGGGACGTT TTTGACTATT CCTGCTTTAA TTATAAAGTT AGTGGGTTAA TGTTAATAAG 359 TCTAATTACT TGGGTGTTAA AAGAGGTAAC CTTGAGTAAA TTAGTGGGTT ATTATTGCCA 4762 |||||||||| |||| ||||| |||||||||| ||| ||| || |||||||||| |||||||||| TCTAATTACT TGGGGGTTAA AAGAGGTAAC CTTAAGTTAA TTAGTGGGTT ATTATTGCCA 419 TCTTTTATTC TTAATTATAT GCTAATTAGG GTAAAAGAAG GAGGGTTTGA AT-AAGAAAA 4703 | |||||||| |||||||||| ||||||||| ||||||||| |||||||||| || ||||||| TATTTTATTC TTAATTATAT ACTAATTAGG GTAAAAGAAA GAGGGTTTGA ATAAAGAAAA 479 -AG-AA-AAG AACAGAAAGA GAGAGAAGGA GAATCGATAG AGAGAGAT-G AACGAAGAGG 4647 || || || || ||||||| ||||||| | | ||| | |||| ||| | |||| ||||| TAGAAAGAAC AAGAGAAAGA GAGAGAAAGT CGAACGAGAA AGAG-GATCG AACG-AGAGG 537 -AAAAACACA AGGCTTTGGG AAAT-TCTTG CTTGATCACT AGTCTTCGGT GGAGGTAGGT 4589 ||||||||| | || ||||| |||| |||| ||||||||| | |||||||| |||||||||| AAAAAACACA AAGC-TTGGG AAATCACTTG CTTGATCACG AATCTTCGGT GGAGGTAGGT 596 TATGGTTTCT CTTACGATAT TCGTAGTAAA CTCTTAATAC CGAATGATAT GTATTGATAA 4529 |||||||||| |||||||||| ||||||||| ||||||||| ||||| |||| |||||||||| TATGGTTTCT CTTACGATAT TCGTAGTAAG CTCTTAATAG CGAATAATAT GTATTGATAA 656 TATT 4525 |||| TATT 660 hqPGS_C06HBa0024L21.1-7-_SGN-E349296+ (5161 4525) ******************************************************************************** EST sequence 6 -strand 726 n (File: SGN-E550322-) 1 GTTTTTTTTT TTTTTTTATG AATTAGCTCA ATGAAAAATG AGTAAATTTT TTATATTTTA 61 TGGCATAATT TTTTCATTAA TTCATGGTTG AGAAAATCTT TGTTTCTAAT AGTGTTATAA 121 ATCGTAAAAT AATAATAATA TTTAAGTAGG AAGAACATAA ATGTAACGAC CTGTTTAGTC 181 GTTTTGAGTA GCAGATTTTA TTTTTGGAAA AACAGGTTGA GACGACGGAA CCCACGACGG 241 ACCGTCATGA GCACGATGGA CCGTCGAGGA GTCTCGTTTC AAAACACTTA GAAATTCTGA 301 AATTGGGTAC TAAAAATCGA CTCTCTGAAC TTCGTAACGG AATGGCACGA CGGACCGTCA 361 CGGGCGTGAC GGACCGTCAC AGACTCTTTG GTGGAAATTG AGTCTCTGAA CCTTGCGACG 421 ACCTGCAGGA CGGACCGTCG CAGGCACGAC GGGCCATCAC AGGTTGCGTA ATCCCAGTCT 481 GGGTCGGATT TCTTTACACG TTTTAAGGGA CGTTTTGGAC TATTCCTACT TTAATTATAA 541 AGTTAGTGGG TTTATGTTAA TAAGTCTAAT TACCTGGGGG TTAAAAGAGG TAACCTTGAG 601 TAAATTAGTG GGTTATTATT CCATCTTTTA TTCTTAATTA TATGCTAATT AGGGTAAAAG 661 AAGGAGGGTT TGAATAAGAA AAAGAAAAGA ACAGAAAGAG AGAGAAGGAG AATCGATCTG 721 GTGCGA Predicted gene structure (within gDNA segment 8407 to 3978): Exon 1 5206 4659 ( 548 n); cDNA 162 726 ( 565 n); score: 0.859 PPA cDNA 19 2 MATCH C06HBa0024L21.1-7- SGN-E550322- 0.859 548 0.755 C PGS_C06HBa0024L21.1-7-_SGN-E550322- (5206 4659) Alignment (genomic DNA sequence = upper lines): TGTAACGACC TGTTTAGTCG TTTTGAGCAG CAGATTTTAT TTCTGGAAAA ACAGGCTGAG 5147 |||||||||| |||||||||| ||||||| || |||||||||| || ||||||| ||||| |||| TGTAACGACC TGTTTAGTCG TTTTGAGTAG CAGATTTTAT TTTTGGAAAA ACAGGTTGAG 221 ACGACGGAAC CTACGACGGA CCGTCATGAG TACGACGGAC CGTCGAGGGG TCTCGTTTCA 5087 |||||||||| | |||||||| |||||||||| |||| |||| |||||||| | |||||||||| ACGACGGAAC CCACGACGGA CCGTCATGAG CACGATGGAC CGTCGAGGAG TCTCGTTTCA 281 AAACACTTAG AAATTTTGAA ATTGGGTACT GAAAATCGAC TCTCTGAACT TCGTAACGGA 5027 |||||||||| ||||| |||| |||||||||| ||||||||| |||||||||| |||||||||| AAACACTTAG AAATTCTGAA ATTGGGTACT AAAAATCGAC TCTCTGAACT TCGTAACGGA 341 ATGGCAGGAC GGACCGTCAC GGGCGTGACG GACCGTCACA GACTCTTTGG TGGAAATTGA 4967 |||||| ||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGGCACGAC GGACCGTCAC GGGCGTGACG GACCGTCACA GACTCTTTGG TGGAAATTGA 401 GTCTCTGAAC CTT--G-CGA --T------- -GACC-T-GC A-G---GACG GGCCGTCACA 4926 |||||||||| ||| | ||| | |||| | || | | |||| |||| ||||| GTCTCTGAAC CTTGCGACGA CCTGCAGGAC GGACCGTCGC AGGCACGACG GGCCATCACA 461 GGTTGCGTAA TCCCAGTCTG GGTCGGATTT CTGTTAAGTA ATTTAAGGGG TGTTTTGGAC 4866 |||||||||| |||||||||| |||||||||| || ||| |||||||| ||||||||| GGTTGCGTAA TCCCAGTCTG GGTCGGATTT CT-TTACACG TTTTAAGGGA CGTTTTGGAC 520 TATTCCAGCT TTATTTATAA AGTTAGTGGG TTTATGTTAA TAAGTCTAAT TACTTGGGTG 4806 |||||| || ||| |||||| |||||||||| |||||||||| |||||||||| ||| |||| | TATTCCTACT TTAATTATAA AGTTAGTGGG TTTATGTTAA TAAGTCTAAT TACCTGGGGG 580 TTAAAAGAGG TAACCTTGAG TAAATTAGTG GGTTATTATT GCCATCTTTT ATTCTTAATT 4746 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| |||||||||| TTAAAAGAGG TAACCTTGAG TAAATTAGTG GGTTATTATT -CCATCTTTT ATTCTTAATT 639 ATATGCTAAT TAGGGTAAAA GAAGGAGGGT TTGAATAAGA AAAAGAAAAG AACAGAAAGA 4686 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATATGCTAAT TAGGGTAAAA GAAGGAGGGT TTGAATAAGA AAAAGAAAAG AACAGAAAGA 699 GAGAGAAGGA GAATCGATAG AGAGAGA 4659 |||||||||| |||||||| | | || GAGAGAAGGA GAATCGATCT GGTGCGA 726 hqPGS_C06HBa0024L21.1-7-_SGN-E550322- (5206 4659) ******************************************************************************** EST sequence 14 -strand 714 n (File: SGN-E390013-) 1 TTTTTTTTTT TTTTATGAAT TAGCTCAATG AAAAATGAGT AAATTTTTTA TATTTTATGG 61 CATAATTTTT TCATTAATTC ATGGTTGAGA AAATCTTNGT TTCTAATAGT GTTATAAATC 121 GTAAAATAAT AATAATATTT AAGTAGGAAG AACATAAATG TAACGACCTG TTTAGTCGTT 181 TTGAGTAGCA GATTTTATTT TTGGAAAAAC AGGTTGAGAC GACGGAACCC ACGACGGACC 241 GTCATGAGCA CGATGGACCG TCGAGGAGTC TCGTTTCAAA ACACTTAGAA ATTCTGAAAT 301 TGGGTACTAA AAATCGACTC TCTGAACTTC GTAACGGAAT GGCACGACGG ACCGTCACGG 361 GCGTGACGGA CCGTCACAGA CTCTTTGGTG GAAATTGAGT CTCTGAACCT TGCGACGACC 421 TGCAGGACGG ACCGTCGCAG GCACGACGGG CCATCACAGG TTGCGTAATC CCAGTCTGGG 481 TCGGATTTCT TTACACGTTT TAAGGGACGT TTTGGACTAT TCCTACTTTA ATTATAAAGT 541 TAGTGGGTTT ATGTTAATAA GTCTAATTAC CTGGGGGTTA AAAGAGGTAA CCTTGAGTAA 601 ATTAGTGGGT TATTATTCCA TCTTTTATTC TTAATTATAT GCTAATTAGG GTAAAAGAAG 661 GAGGGTTTGA ATAAGAAAAA GAAAAGAACA GAAAGAGAGA GAAGGAGAAT CGAT Predicted gene structure (within gDNA segment 9577 to 4068): Exon 1 5206 4668 ( 539 n); cDNA 159 714 ( 556 n); score: 0.865 PPA cDNA 16 1 MATCH C06HBa0024L21.1-7- SGN-E390013- 0.865 539 0.755 C PGS_C06HBa0024L21.1-7-_SGN-E390013- (5206 4668) Alignment (genomic DNA sequence = upper lines): TGTAACGACC TGTTTAGTCG TTTTGAGCAG CAGATTTTAT TTCTGGAAAA ACAGGCTGAG 5147 |||||||||| |||||||||| ||||||| || |||||||||| || ||||||| ||||| |||| TGTAACGACC TGTTTAGTCG TTTTGAGTAG CAGATTTTAT TTTTGGAAAA ACAGGTTGAG 218 ACGACGGAAC CTACGACGGA CCGTCATGAG TACGACGGAC CGTCGAGGGG TCTCGTTTCA 5087 |||||||||| | |||||||| |||||||||| |||| |||| |||||||| | |||||||||| ACGACGGAAC CCACGACGGA CCGTCATGAG CACGATGGAC CGTCGAGGAG TCTCGTTTCA 278 AAACACTTAG AAATTTTGAA ATTGGGTACT GAAAATCGAC TCTCTGAACT TCGTAACGGA 5027 |||||||||| ||||| |||| |||||||||| ||||||||| |||||||||| |||||||||| AAACACTTAG AAATTCTGAA ATTGGGTACT AAAAATCGAC TCTCTGAACT TCGTAACGGA 338 ATGGCAGGAC GGACCGTCAC GGGCGTGACG GACCGTCACA GACTCTTTGG TGGAAATTGA 4967 |||||| ||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGGCACGAC GGACCGTCAC GGGCGTGACG GACCGTCACA GACTCTTTGG TGGAAATTGA 398 GTCTCTGAAC CTT--G-CGA --T------- -GACC-T-GC A-G---GACG GGCCGTCACA 4926 |||||||||| ||| | ||| | |||| | || | | |||| |||| ||||| GTCTCTGAAC CTTGCGACGA CCTGCAGGAC GGACCGTCGC AGGCACGACG GGCCATCACA 458 GGTTGCGTAA TCCCAGTCTG GGTCGGATTT CTGTTAAGTA ATTTAAGGGG TGTTTTGGAC 4866 |||||||||| |||||||||| |||||||||| || ||| |||||||| ||||||||| GGTTGCGTAA TCCCAGTCTG GGTCGGATTT CT-TTACACG TTTTAAGGGA CGTTTTGGAC 517 TATTCCAGCT TTATTTATAA AGTTAGTGGG TTTATGTTAA TAAGTCTAAT TACTTGGGTG 4806 |||||| || ||| |||||| |||||||||| |||||||||| |||||||||| ||| |||| | TATTCCTACT TTAATTATAA AGTTAGTGGG TTTATGTTAA TAAGTCTAAT TACCTGGGGG 577 TTAAAAGAGG TAACCTTGAG TAAATTAGTG GGTTATTATT GCCATCTTTT ATTCTTAATT 4746 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| |||||||||| TTAAAAGAGG TAACCTTGAG TAAATTAGTG GGTTATTATT -CCATCTTTT ATTCTTAATT 636 ATATGCTAAT TAGGGTAAAA GAAGGAGGGT TTGAATAAGA AAAAGAAAAG AACAGAAAGA 4686 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATATGCTAAT TAGGGTAAAA GAAGGAGGGT TTGAATAAGA AAAAGAAAAG AACAGAAAGA 696 GAGAGAAGGA GAATCGAT 4668 |||||||||| |||||||| GAGAGAAGGA GAATCGAT 714 hqPGS_C06HBa0024L21.1-7-_SGN-E390013- (5206 4668) ******************************************************************************** EST sequence 17 -strand 713 n (File: SGN-E550211-) 1 TTTTTTTTTT TTTTATGAAT TAGCTCAATG AAAAATGAGT AAATTTTTTA TATTTTATGG 61 CATAATTTTT TCATTAATTC ATGGTTGAGA AAATCTTTGT TTCTAATAGT GTTATAAATC 121 GTAAAATAAT AATAATATTT AAGTAGGAAG AACATAAATG TAACGACCTG TTTAGTCGTT 181 TTGAGTAGCA GATTTTATTT TTGGAAAAAC AGGTTGAGAC GACGGAACCC ACGACGGACC 241 GTCATGAGCA CGATGGACCG TCGAGGAGTC TCGTTTCAAA ACACTTAGAA ATTCTGAAAT 301 TGGGTACTAA AAATCGACTC TCTGAACTTC GTAACGGAAT GGCACGACGG ACCGTCACGG 361 GCGTGACGGA CCGTCACAGA CTCTTTGGTG GAAATTGAGT CTCTGAACCT TGCGACGACC 421 TGCAGGACGG ACCGTCGCAG GCACGACGGG CCATCACAGG TTGCGTAATC CCAGTCTGGG 481 TCGGATTTCT TTACACGTTT TAAGGGACGT TTTGGACTAT TCCTACTTTA ATTATAAAGT 541 TAGTGGGTTT ATGTTAATAA GTCTAATTAC CTGGGGGTTA AAAGAGGTAA CCTTGAGTAA 601 ATTAGTGGGT TATTATTCCA TCTTTTATTC TTAATTATAT GCTAATTAGG GTAAAAGAAG 661 GAGGGTTGAA TAAGAAAAAG AAAAGAACAG AAAGAGAGAG AAGGAGAATC GAT Predicted gene structure (within gDNA segment 9577 to 4068): Exon 1 5206 4668 ( 539 n); cDNA 159 713 ( 555 n); score: 0.864 PPA cDNA 16 1 MATCH C06HBa0024L21.1-7- SGN-E550211- 0.864 539 0.756 C PGS_C06HBa0024L21.1-7-_SGN-E550211- (5206 4668) Alignment (genomic DNA sequence = upper lines): TGTAACGACC TGTTTAGTCG TTTTGAGCAG CAGATTTTAT TTCTGGAAAA ACAGGCTGAG 5147 |||||||||| |||||||||| ||||||| || |||||||||| || ||||||| ||||| |||| TGTAACGACC TGTTTAGTCG TTTTGAGTAG CAGATTTTAT TTTTGGAAAA ACAGGTTGAG 218 ACGACGGAAC CTACGACGGA CCGTCATGAG TACGACGGAC CGTCGAGGGG TCTCGTTTCA 5087 |||||||||| | |||||||| |||||||||| |||| |||| |||||||| | |||||||||| ACGACGGAAC CCACGACGGA CCGTCATGAG CACGATGGAC CGTCGAGGAG TCTCGTTTCA 278 AAACACTTAG AAATTTTGAA ATTGGGTACT GAAAATCGAC TCTCTGAACT TCGTAACGGA 5027 |||||||||| ||||| |||| |||||||||| ||||||||| |||||||||| |||||||||| AAACACTTAG AAATTCTGAA ATTGGGTACT AAAAATCGAC TCTCTGAACT TCGTAACGGA 338 ATGGCAGGAC GGACCGTCAC GGGCGTGACG GACCGTCACA GACTCTTTGG TGGAAATTGA 4967 |||||| ||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGGCACGAC GGACCGTCAC GGGCGTGACG GACCGTCACA GACTCTTTGG TGGAAATTGA 398 GTCTCTGAAC CTT--G-CGA --T------- -GACC-T-GC A-G---GACG GGCCGTCACA 4926 |||||||||| ||| | ||| | |||| | || | | |||| |||| ||||| GTCTCTGAAC CTTGCGACGA CCTGCAGGAC GGACCGTCGC AGGCACGACG GGCCATCACA 458 GGTTGCGTAA TCCCAGTCTG GGTCGGATTT CTGTTAAGTA ATTTAAGGGG TGTTTTGGAC 4866 |||||||||| |||||||||| |||||||||| || ||| |||||||| ||||||||| GGTTGCGTAA TCCCAGTCTG GGTCGGATTT CT-TTACACG TTTTAAGGGA CGTTTTGGAC 517 TATTCCAGCT TTATTTATAA AGTTAGTGGG TTTATGTTAA TAAGTCTAAT TACTTGGGTG 4806 |||||| || ||| |||||| |||||||||| |||||||||| |||||||||| ||| |||| | TATTCCTACT TTAATTATAA AGTTAGTGGG TTTATGTTAA TAAGTCTAAT TACCTGGGGG 577 TTAAAAGAGG TAACCTTGAG TAAATTAGTG GGTTATTATT GCCATCTTTT ATTCTTAATT 4746 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| |||||||||| TTAAAAGAGG TAACCTTGAG TAAATTAGTG GGTTATTATT -CCATCTTTT ATTCTTAATT 636 ATATGCTAAT TAGGGTAAAA GAAGGAGGGT TTGAATAAGA AAAAGAAAAG AACAGAAAGA 4686 |||||||||| |||||||||| ||||||||| |||||||||| |||||||||| |||||||||| ATATGCTAAT TAGGGTAAAA GAAGGAGGG- TTGAATAAGA AAAAGAAAAG AACAGAAAGA 695 GAGAGAAGGA GAATCGAT 4668 |||||||||| |||||||| GAGAGAAGGA GAATCGAT 713 hqPGS_C06HBa0024L21.1-7-_SGN-E550211- (5206 4668) ******************************************************************************** EST sequence 20 -strand 714 n (File: SGN-E550025-) 1 TTTTTTTTTT TTTTATGAAT TAGCTCAATG AAAAATGAGT AAATTTTTTA TATTTTATGG 61 CATAATTTTT TCATTAATTC ATGGTTGAGA AAATCTTTGT TTCTAATAGT GTTATAAATC 121 GTAAAATAAT AATAATATTT AAGTAGGAAG AACATAAATG TAACGACCTG TTTAGTCGTT 181 TTGAGTAGCA GATTTTATTT TTGGAAAAAC AGGTTGAGAC GACGGAACCC ACGACGGACC 241 GTCATGAGCA CGATGGACCG TCGAGGAGTC TCGTTTCAAA ACACTTAGAA ATTCTGAAAT 301 TGGGTACTAA AAATCGACTC TCTGAACTTC GTAACGGAAT GGCACGACGG ACCGTCACGG 361 GCGTGACGGA CCGTCACAGA CTCTTTGGTG GAAATTGAGT CTCTGAACCT TGCGACGACC 421 TGCAGGACGG ACCGTCGCAG GCACGACGGG CCATCACAGG TTGCGTAATC CCAGTCTGGG 481 TCGGATTTCT TTACACGTTT TAAGGGACGT TTTGGACTAT TCCTACTTTA ATTATAAAGT 541 TAGTGGGTTT ATGTTAATAA GTCTAATTAC CTGGGGGTTA AAAGAGGTAA CCTTGAGTAA 601 ATTAGTGGGT TATTATTCCA TCTTTTATTC TTAATTATAT GCTAATTAGG GTAAAAGAAG 661 GAGGGTTTGA ATAAGAAAAA GAAAAGAACA GAAAGAGAGA GAAGGAGAAT CGAT Predicted gene structure (within gDNA segment 9577 to 4068): Exon 1 5206 4668 ( 539 n); cDNA 159 714 ( 556 n); score: 0.865 PPA cDNA 16 1 MATCH C06HBa0024L21.1-7- SGN-E550025- 0.865 539 0.755 C PGS_C06HBa0024L21.1-7-_SGN-E550025- (5206 4668) Alignment (genomic DNA sequence = upper lines): TGTAACGACC TGTTTAGTCG TTTTGAGCAG CAGATTTTAT TTCTGGAAAA ACAGGCTGAG 5147 |||||||||| |||||||||| ||||||| || |||||||||| || ||||||| ||||| |||| TGTAACGACC TGTTTAGTCG TTTTGAGTAG CAGATTTTAT TTTTGGAAAA ACAGGTTGAG 218 ACGACGGAAC CTACGACGGA CCGTCATGAG TACGACGGAC CGTCGAGGGG TCTCGTTTCA 5087 |||||||||| | |||||||| |||||||||| |||| |||| |||||||| | |||||||||| ACGACGGAAC CCACGACGGA CCGTCATGAG CACGATGGAC CGTCGAGGAG TCTCGTTTCA 278 AAACACTTAG AAATTTTGAA ATTGGGTACT GAAAATCGAC TCTCTGAACT TCGTAACGGA 5027 |||||||||| ||||| |||| |||||||||| ||||||||| |||||||||| |||||||||| AAACACTTAG AAATTCTGAA ATTGGGTACT AAAAATCGAC TCTCTGAACT TCGTAACGGA 338 ATGGCAGGAC GGACCGTCAC GGGCGTGACG GACCGTCACA GACTCTTTGG TGGAAATTGA 4967 |||||| ||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGGCACGAC GGACCGTCAC GGGCGTGACG GACCGTCACA GACTCTTTGG TGGAAATTGA 398 GTCTCTGAAC CTT--G-CGA --T------- -GACC-T-GC A-G---GACG GGCCGTCACA 4926 |||||||||| ||| | ||| | |||| | || | | |||| |||| ||||| GTCTCTGAAC CTTGCGACGA CCTGCAGGAC GGACCGTCGC AGGCACGACG GGCCATCACA 458 GGTTGCGTAA TCCCAGTCTG GGTCGGATTT CTGTTAAGTA ATTTAAGGGG TGTTTTGGAC 4866 |||||||||| |||||||||| |||||||||| || ||| |||||||| ||||||||| GGTTGCGTAA TCCCAGTCTG GGTCGGATTT CT-TTACACG TTTTAAGGGA CGTTTTGGAC 517 TATTCCAGCT TTATTTATAA AGTTAGTGGG TTTATGTTAA TAAGTCTAAT TACTTGGGTG 4806 |||||| || ||| |||||| |||||||||| |||||||||| |||||||||| ||| |||| | TATTCCTACT TTAATTATAA AGTTAGTGGG TTTATGTTAA TAAGTCTAAT TACCTGGGGG 577 TTAAAAGAGG TAACCTTGAG TAAATTAGTG GGTTATTATT GCCATCTTTT ATTCTTAATT 4746 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| |||||||||| TTAAAAGAGG TAACCTTGAG TAAATTAGTG GGTTATTATT -CCATCTTTT ATTCTTAATT 636 ATATGCTAAT TAGGGTAAAA GAAGGAGGGT TTGAATAAGA AAAAGAAAAG AACAGAAAGA 4686 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATATGCTAAT TAGGGTAAAA GAAGGAGGGT TTGAATAAGA AAAAGAAAAG AACAGAAAGA 696 GAGAGAAGGA GAATCGAT 4668 |||||||||| |||||||| GAGAGAAGGA GAATCGAT 714 hqPGS_C06HBa0024L21.1-7-_SGN-E550025- (5206 4668) ******************************************************************************** EST sequence 4 -strand 729 n (File: SGN-E550212-) 1 GCCCCCCCCC GAGTTTTTTT TTTTTTTTTA TGAATTAGCT CAATGAAAAA TGAGTAAATT 61 TTTTATATTT TATGGCATAA TTTTTTCATT AATTCATGGT TGAGAAAATC TTTGTTTCTA 121 ATAGTGTTAT AAATCGTAAA ATAATAATAA TATTTAAGTA GGAAGAACAT AAATGTAACG 181 ACCTGTTTAG TCGTTTTGAG TAGCAGATTT TATTTTTGGA AAAACAGGTT GAGACGACGG 241 AACCCACGAC GGACCGTCAT GAGCACGATG GACCGTCGAG GAGTCTCGTT TCAAAACACT 301 TAGAAATTCT GAAATTGGGT ACTAAAAATC GACTCTCTGA ACTTCGTAAC GGAATGGCAC 361 GACGGACCGT CACGGGCGTG ACGGACCGTC ACAGACTCTT TGGTGGAAAT TGAGTCTCTG 421 AACCTTGCGA CGACCTGCAG GACGGACCGT CGCAGGCACG ACGGGCCATC ACAGGTTGCG 481 TAATCCCAGT CTGGGTCGGA TTTCTTTACA CGTTTTAAGG GACGTTTTGG ACTATTCCTA 541 CTTTAATTAT AAAGTTAGTG GGTTTATGTT AATAAGTCTA ATTACCTGGG GGTTAAAAGA 601 GGTAACCTTG AGTAAATTAG TGGGTTATTA TTCCATCTTT TATTCTTAAT TATATGCTAA 661 TTAGGGTAAA AGAAGGAGGG TTTGAATAAG AAAAAGAAAA GAACAGAAAG AGAGAGAAGG 721 AGAATCGAT Predicted gene structure (within gDNA segment 8527 to 4068): Exon 1 5206 4668 ( 539 n); cDNA 174 729 ( 556 n); score: 0.865 PPA cDNA 31 14 MATCH C06HBa0024L21.1-7- SGN-E550212- 0.865 539 0.739 C PGS_C06HBa0024L21.1-7-_SGN-E550212- (5206 4668) Alignment (genomic DNA sequence = upper lines): TGTAACGACC TGTTTAGTCG TTTTGAGCAG CAGATTTTAT TTCTGGAAAA ACAGGCTGAG 5147 |||||||||| |||||||||| ||||||| || |||||||||| || ||||||| ||||| |||| TGTAACGACC TGTTTAGTCG TTTTGAGTAG CAGATTTTAT TTTTGGAAAA ACAGGTTGAG 233 ACGACGGAAC CTACGACGGA CCGTCATGAG TACGACGGAC CGTCGAGGGG TCTCGTTTCA 5087 |||||||||| | |||||||| |||||||||| |||| |||| |||||||| | |||||||||| ACGACGGAAC CCACGACGGA CCGTCATGAG CACGATGGAC CGTCGAGGAG TCTCGTTTCA 293 AAACACTTAG AAATTTTGAA ATTGGGTACT GAAAATCGAC TCTCTGAACT TCGTAACGGA 5027 |||||||||| ||||| |||| |||||||||| ||||||||| |||||||||| |||||||||| AAACACTTAG AAATTCTGAA ATTGGGTACT AAAAATCGAC TCTCTGAACT TCGTAACGGA 353 ATGGCAGGAC GGACCGTCAC GGGCGTGACG GACCGTCACA GACTCTTTGG TGGAAATTGA 4967 |||||| ||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGGCACGAC GGACCGTCAC GGGCGTGACG GACCGTCACA GACTCTTTGG TGGAAATTGA 413 GTCTCTGAAC CTT--G-CGA --T------- -GACC-T-GC A-G---GACG GGCCGTCACA 4926 |||||||||| ||| | ||| | |||| | || | | |||| |||| ||||| GTCTCTGAAC CTTGCGACGA CCTGCAGGAC GGACCGTCGC AGGCACGACG GGCCATCACA 473 GGTTGCGTAA TCCCAGTCTG GGTCGGATTT CTGTTAAGTA ATTTAAGGGG TGTTTTGGAC 4866 |||||||||| |||||||||| |||||||||| || ||| |||||||| ||||||||| GGTTGCGTAA TCCCAGTCTG GGTCGGATTT CT-TTACACG TTTTAAGGGA CGTTTTGGAC 532 TATTCCAGCT TTATTTATAA AGTTAGTGGG TTTATGTTAA TAAGTCTAAT TACTTGGGTG 4806 |||||| || ||| |||||| |||||||||| |||||||||| |||||||||| ||| |||| | TATTCCTACT TTAATTATAA AGTTAGTGGG TTTATGTTAA TAAGTCTAAT TACCTGGGGG 592 TTAAAAGAGG TAACCTTGAG TAAATTAGTG GGTTATTATT GCCATCTTTT ATTCTTAATT 4746 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| |||||||||| TTAAAAGAGG TAACCTTGAG TAAATTAGTG GGTTATTATT -CCATCTTTT ATTCTTAATT 651 ATATGCTAAT TAGGGTAAAA GAAGGAGGGT TTGAATAAGA AAAAGAAAAG AACAGAAAGA 4686 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATATGCTAAT TAGGGTAAAA GAAGGAGGGT TTGAATAAGA AAAAGAAAAG AACAGAAAGA 711 GAGAGAAGGA GAATCGAT 4668 |||||||||| |||||||| GAGAGAAGGA GAATCGAT 729 hqPGS_C06HBa0024L21.1-7-_SGN-E550212- (5206 4668) ******************************************************************************** EST sequence 5 -strand 710 n (File: SGN-E550065-) 1 TTTTTTTCTT ATGAATCAGC TCAATGAAAA ATGAGTAAAT TTTTTATATT TCATGGCATA 61 ATTTTTTCAT TAATTCATGG TTGAGAAAAT CTTTGTTTCT AATAGTGTTA TAAATCGTAA 121 AATAATAATA ATATTTAAGT AGGAAGAACA TAAATGTAAC GACCTGTTTA GTCGTTTTGA 181 GTAGCAGATT TTATTTTTGG AAAAACAGGT TGAGACGACG GAACCCACGA CGGACCGTCA 241 TGAGCACGAT GGACCGTCGA GGAGTCTCGT TTCAAAACAC TTAGAAATTC TGAAATTGGG 301 TACTAAAAAT CGACTCTCTG AACTTCGTAA CGGAATGGCA CGACGGACCG TCACGGGCGT 361 GACGGACCGT CACAGACTCT TTGGTGGAAA TTGAGTCTCT GAACCTTGCG ACGACCTGCA 421 GGACGGACCG TCGCAGGCAC GACGGGCCAT CACAGGTTGC GTAATCCCAG TCTGGGTCGG 481 ATTTCTTTAC ACGTTTTAAG GGACGTTTTG GACTATTCCT ACTTTAATTA TAAAGTTAGT 541 GGGTTTATGT TAATAAGTCT AATTACCTGG GGGTTAAAAG AGGTAACCTT GAGTAAATTA 601 GTGGGTTATT ATTCCATCTT TTATTCTTAA TTATATGCTA ATTAGGGTAA AAGAAGGAGG 661 GTTTGAATAA GAAAAAGAAA AGAACAGAAA GAGAGAGAAG GAGAATCGAT Predicted gene structure (within gDNA segment 8337 to 4068): Exon 1 5206 4668 ( 539 n); cDNA 155 710 ( 556 n); score: 0.865 MATCH C06HBa0024L21.1-7- SGN-E550065- 0.865 539 0.759 C PGS_C06HBa0024L21.1-7-_SGN-E550065- (5206 4668) Alignment (genomic DNA sequence = upper lines): TGTAACGACC TGTTTAGTCG TTTTGAGCAG CAGATTTTAT TTCTGGAAAA ACAGGCTGAG 5147 |||||||||| |||||||||| ||||||| || |||||||||| || ||||||| ||||| |||| TGTAACGACC TGTTTAGTCG TTTTGAGTAG CAGATTTTAT TTTTGGAAAA ACAGGTTGAG 214 ACGACGGAAC CTACGACGGA CCGTCATGAG TACGACGGAC CGTCGAGGGG TCTCGTTTCA 5087 |||||||||| | |||||||| |||||||||| |||| |||| |||||||| | |||||||||| ACGACGGAAC CCACGACGGA CCGTCATGAG CACGATGGAC CGTCGAGGAG TCTCGTTTCA 274 AAACACTTAG AAATTTTGAA ATTGGGTACT GAAAATCGAC TCTCTGAACT TCGTAACGGA 5027 |||||||||| ||||| |||| |||||||||| ||||||||| |||||||||| |||||||||| AAACACTTAG AAATTCTGAA ATTGGGTACT AAAAATCGAC TCTCTGAACT TCGTAACGGA 334 ATGGCAGGAC GGACCGTCAC GGGCGTGACG GACCGTCACA GACTCTTTGG TGGAAATTGA 4967 |||||| ||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGGCACGAC GGACCGTCAC GGGCGTGACG GACCGTCACA GACTCTTTGG TGGAAATTGA 394 GTCTCTGAAC CTT--G-CGA --T------- -GACC-T-GC A-G---GACG GGCCGTCACA 4926 |||||||||| ||| | ||| | |||| | || | | |||| |||| ||||| GTCTCTGAAC CTTGCGACGA CCTGCAGGAC GGACCGTCGC AGGCACGACG GGCCATCACA 454 GGTTGCGTAA TCCCAGTCTG GGTCGGATTT CTGTTAAGTA ATTTAAGGGG TGTTTTGGAC 4866 |||||||||| |||||||||| |||||||||| || ||| |||||||| ||||||||| GGTTGCGTAA TCCCAGTCTG GGTCGGATTT CT-TTACACG TTTTAAGGGA CGTTTTGGAC 513 TATTCCAGCT TTATTTATAA AGTTAGTGGG TTTATGTTAA TAAGTCTAAT TACTTGGGTG 4806 |||||| || ||| |||||| |||||||||| |||||||||| |||||||||| ||| |||| | TATTCCTACT TTAATTATAA AGTTAGTGGG TTTATGTTAA TAAGTCTAAT TACCTGGGGG 573 TTAAAAGAGG TAACCTTGAG TAAATTAGTG GGTTATTATT GCCATCTTTT ATTCTTAATT 4746 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| |||||||||| TTAAAAGAGG TAACCTTGAG TAAATTAGTG GGTTATTATT -CCATCTTTT ATTCTTAATT 632 ATATGCTAAT TAGGGTAAAA GAAGGAGGGT TTGAATAAGA AAAAGAAAAG AACAGAAAGA 4686 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATATGCTAAT TAGGGTAAAA GAAGGAGGGT TTGAATAAGA AAAAGAAAAG AACAGAAAGA 692 GAGAGAAGGA GAATCGAT 4668 |||||||||| |||||||| GAGAGAAGGA GAATCGAT 710 hqPGS_C06HBa0024L21.1-7-_SGN-E550065- (5206 4668) ******************************************************************************** EST sequence 7 -strand 732 n (File: SGN-E550201-) 1 GGCCCCCCCT CGAGTTTTTT TTTTTTTTTT TTATGAATTA GCTCAATGAA AAATGAGTAA 61 ATTTTTTATA TTTTATGGCA TAATTTTTTC ATTAATTCAT GGTNGAGAAA ATCTTTGTTT 121 CTAATAGTGT TATAAATCGT AAAATAATAA TAATATTTAA GTAGGAAGAA CATAAATGTA 181 ACGACCTGTT TAGTCGTTTT GAGTAGCAGA TTTTATTTTT GGAAAAACAG GTTGAGACGA 241 CGGAACCCAC GACGGACCGT CATGAGCACG ATGGACCGTC GAGGAGTCTC GTTTCAAAAC 301 ACTTAGAAAT TCTGAAATTG GGTACTAAAA ATCGACTCTC TGAACTTCGT AACGGAATGG 361 CACGACGGAC CGTCACGGGC GTGACGGACC GTCACAGACT CTTTGGTGGA AATTGAGTCT 421 CTGAACCTTG CGACGACCTG CAGGACGGAC CGTCGCAGGC ACGACGGGCC ATCACAGGTT 481 GCGTAATCCC AGTCTGGGTC GGATTTCTTT ACACGTTTTA AGGGACGTTT TGGACTATTC 541 CTACTTTAAT TATAAAGTTA GTGGGTTTAT GTTAATAAGT CTAATTACCT GGGGGTTAAA 601 AGAGGTAACC TTGAGTAAAT TAGTGGGTTA TTATTCCATC TTTTATTCTT AATTATATGC 661 TAATTAGGGT AAAAGAAGGA GGGTTTGAAT AAGAAAAAGA AAAGAACAGA AAGAGAGAGA 721 AGGAGAATCG AT Predicted gene structure (within gDNA segment 8557 to 4068): Exon 1 5206 4668 ( 539 n); cDNA 177 732 ( 556 n); score: 0.865 PPA cDNA 34 15 MATCH C06HBa0024L21.1-7- SGN-E550201- 0.865 539 0.736 C PGS_C06HBa0024L21.1-7-_SGN-E550201- (5206 4668) Alignment (genomic DNA sequence = upper lines): TGTAACGACC TGTTTAGTCG TTTTGAGCAG CAGATTTTAT TTCTGGAAAA ACAGGCTGAG 5147 |||||||||| |||||||||| ||||||| || |||||||||| || ||||||| ||||| |||| TGTAACGACC TGTTTAGTCG TTTTGAGTAG CAGATTTTAT TTTTGGAAAA ACAGGTTGAG 236 ACGACGGAAC CTACGACGGA CCGTCATGAG TACGACGGAC CGTCGAGGGG TCTCGTTTCA 5087 |||||||||| | |||||||| |||||||||| |||| |||| |||||||| | |||||||||| ACGACGGAAC CCACGACGGA CCGTCATGAG CACGATGGAC CGTCGAGGAG TCTCGTTTCA 296 AAACACTTAG AAATTTTGAA ATTGGGTACT GAAAATCGAC TCTCTGAACT TCGTAACGGA 5027 |||||||||| ||||| |||| |||||||||| ||||||||| |||||||||| |||||||||| AAACACTTAG AAATTCTGAA ATTGGGTACT AAAAATCGAC TCTCTGAACT TCGTAACGGA 356 ATGGCAGGAC GGACCGTCAC GGGCGTGACG GACCGTCACA GACTCTTTGG TGGAAATTGA 4967 |||||| ||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGGCACGAC GGACCGTCAC GGGCGTGACG GACCGTCACA GACTCTTTGG TGGAAATTGA 416 GTCTCTGAAC CTT--G-CGA --T------- -GACC-T-GC A-G---GACG GGCCGTCACA 4926 |||||||||| ||| | ||| | |||| | || | | |||| |||| ||||| GTCTCTGAAC CTTGCGACGA CCTGCAGGAC GGACCGTCGC AGGCACGACG GGCCATCACA 476 GGTTGCGTAA TCCCAGTCTG GGTCGGATTT CTGTTAAGTA ATTTAAGGGG TGTTTTGGAC 4866 |||||||||| |||||||||| |||||||||| || ||| |||||||| ||||||||| GGTTGCGTAA TCCCAGTCTG GGTCGGATTT CT-TTACACG TTTTAAGGGA CGTTTTGGAC 535 TATTCCAGCT TTATTTATAA AGTTAGTGGG TTTATGTTAA TAAGTCTAAT TACTTGGGTG 4806 |||||| || ||| |||||| |||||||||| |||||||||| |||||||||| ||| |||| | TATTCCTACT TTAATTATAA AGTTAGTGGG TTTATGTTAA TAAGTCTAAT TACCTGGGGG 595 TTAAAAGAGG TAACCTTGAG TAAATTAGTG GGTTATTATT GCCATCTTTT ATTCTTAATT 4746 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| |||||||||| TTAAAAGAGG TAACCTTGAG TAAATTAGTG GGTTATTATT -CCATCTTTT ATTCTTAATT 654 ATATGCTAAT TAGGGTAAAA GAAGGAGGGT TTGAATAAGA AAAAGAAAAG AACAGAAAGA 4686 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATATGCTAAT TAGGGTAAAA GAAGGAGGGT TTGAATAAGA AAAAGAAAAG AACAGAAAGA 714 GAGAGAAGGA GAATCGAT 4668 |||||||||| |||||||| GAGAGAAGGA GAATCGAT 732 hqPGS_C06HBa0024L21.1-7-_SGN-E550201- (5206 4668) ******************************************************************************** EST sequence 8 -strand 709 n (File: SGN-E550207-) 1 TTTTTTTTTA TGAATTAGCT CAATGAAAAA TGAGTAAATT TTTTATATTT TATGGCATAA 61 TTTTTTCATT AATTCATGGT GNAGAAAATC TTTGTTTCTA ATAGTGTTAT AAATCGTAAA 121 ATAATAATAA TATTTAAGTA GGAAGAACAT AAATGTAACG ACCTGTTTAG TCGTTTTGAG 181 TAGCAGATTT TATTTTTGGA AAAACAGGTT GAGACGACGG AACCCACGAC GGACCGTCAT 241 GAGCACGATG GACCGTCGAG GAGTCTCGTT TCAAAACACT TAGAAATTCT GAAATTGGGT 301 ACTAAAAATC GACTCTCTGA ACTTCGTAAC GGAATGGCAC GACGGACCGT CACGGGCGTG 361 ACGGACCGTC ACAGACTCTT TGGTGGAAAT TGAGTCTCTG AACCTTGCGA CGACCTGCAG 421 GACGGACCGT CGCAGGCACG ACGGGCCATC ACAGGTTGCG TAATCCCAGT CTGGGTCGGA 481 TTTCTTTACA CGTTTTAAGG GACGTTTTGG ACTATTCCTA CTTTAATTAT AAAGTTAGTG 541 GGTTTATGTT AATAAGTCTA ATTACCTGGG GGTTAAAAGA GGTAACCTTG AGTAAATTAG 601 TGGGTTATTA TTCCATCTTT TATTCTTAAT TATATGCTAA TTAGGGTAAA AGAAGGAGGG 661 TTTGAATAAG AAAAAGAAAA GAACAGAAAG AGAGAGAAGG AGAATCGAT Predicted gene structure (within gDNA segment 8327 to 4068): Exon 1 5206 4668 ( 539 n); cDNA 154 709 ( 556 n); score: 0.865 PPA cDNA 11 1 MATCH C06HBa0024L21.1-7- SGN-E550207- 0.865 539 0.760 C PGS_C06HBa0024L21.1-7-_SGN-E550207- (5206 4668) Alignment (genomic DNA sequence = upper lines): TGTAACGACC TGTTTAGTCG TTTTGAGCAG CAGATTTTAT TTCTGGAAAA ACAGGCTGAG 5147 |||||||||| |||||||||| ||||||| || |||||||||| || ||||||| ||||| |||| TGTAACGACC TGTTTAGTCG TTTTGAGTAG CAGATTTTAT TTTTGGAAAA ACAGGTTGAG 213 ACGACGGAAC CTACGACGGA CCGTCATGAG TACGACGGAC CGTCGAGGGG TCTCGTTTCA 5087 |||||||||| | |||||||| |||||||||| |||| |||| |||||||| | |||||||||| ACGACGGAAC CCACGACGGA CCGTCATGAG CACGATGGAC CGTCGAGGAG TCTCGTTTCA 273 AAACACTTAG AAATTTTGAA ATTGGGTACT GAAAATCGAC TCTCTGAACT TCGTAACGGA 5027 |||||||||| ||||| |||| |||||||||| ||||||||| |||||||||| |||||||||| AAACACTTAG AAATTCTGAA ATTGGGTACT AAAAATCGAC TCTCTGAACT TCGTAACGGA 333 ATGGCAGGAC GGACCGTCAC GGGCGTGACG GACCGTCACA GACTCTTTGG TGGAAATTGA 4967 |||||| ||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGGCACGAC GGACCGTCAC GGGCGTGACG GACCGTCACA GACTCTTTGG TGGAAATTGA 393 GTCTCTGAAC CTT--G-CGA --T------- -GACC-T-GC A-G---GACG GGCCGTCACA 4926 |||||||||| ||| | ||| | |||| | || | | |||| |||| ||||| GTCTCTGAAC CTTGCGACGA CCTGCAGGAC GGACCGTCGC AGGCACGACG GGCCATCACA 453 GGTTGCGTAA TCCCAGTCTG GGTCGGATTT CTGTTAAGTA ATTTAAGGGG TGTTTTGGAC 4866 |||||||||| |||||||||| |||||||||| || ||| |||||||| ||||||||| GGTTGCGTAA TCCCAGTCTG GGTCGGATTT CT-TTACACG TTTTAAGGGA CGTTTTGGAC 512 TATTCCAGCT TTATTTATAA AGTTAGTGGG TTTATGTTAA TAAGTCTAAT TACTTGGGTG 4806 |||||| || ||| |||||| |||||||||| |||||||||| |||||||||| ||| |||| | TATTCCTACT TTAATTATAA AGTTAGTGGG TTTATGTTAA TAAGTCTAAT TACCTGGGGG 572 TTAAAAGAGG TAACCTTGAG TAAATTAGTG GGTTATTATT GCCATCTTTT ATTCTTAATT 4746 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| |||||||||| TTAAAAGAGG TAACCTTGAG TAAATTAGTG GGTTATTATT -CCATCTTTT ATTCTTAATT 631 ATATGCTAAT TAGGGTAAAA GAAGGAGGGT TTGAATAAGA AAAAGAAAAG AACAGAAAGA 4686 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATATGCTAAT TAGGGTAAAA GAAGGAGGGT TTGAATAAGA AAAAGAAAAG AACAGAAAGA 691 GAGAGAAGGA GAATCGAT 4668 |||||||||| |||||||| GAGAGAAGGA GAATCGAT 709 hqPGS_C06HBa0024L21.1-7-_SGN-E550207- (5206 4668) ******************************************************************************** EST sequence 9 -strand 715 n (File: SGN-E550335-) 1 TTTTTTTTTT TTTTTTATGA ATTAGCTCAA TGAAAAATGA GTAAATTTTT TATATTTTAT 61 GGCATAATTT TTTCATTAAT TCATGGTNGA GAAAATCTTT GTTTCTAATA GTGTTATAAA 121 TCGTAAAATA ATAATAATAT TTAAGTAGGA AGAACATAAA TGTAACGACC TGTTTAGTCG 181 TTTTGAGTAG CAGATTTTAT TTTTGGAAAA ACAGGTTGAG ACGACGGAAC CCACGACGGA 241 CCGTCATGAG CACGATGGAC CGTCGAGGAG TCTCGTTTCA AAACACTTAG AAATTCTGAA 301 ATTGGGTACT AAAAATCGAC TCTCTGAACT TCGTAACGGA ATGGCACGAC GGACCGTCAC 361 GGGCGTGACG GACCGTCACA GATTCTTTGG TGGAAATTGA GTCTCTGAAC CTTGCGACGA 421 CCTGCAGGAC GGACCGTCGC AGGCACGACG GGCCATCACA GGTTGCGTAA TCCCAGTCTG 481 GGTCGGATTT CTTTACACGT TTTAAGGGAC GTTTTGGACT ATTCCTACTT TAATTATAAA 541 GTTAGTGGGT TTATGTTAAT AAGTCTAATT ACCTGGGGGT TAAAAGAGGT AACCTTGAGT 601 AAATTAGTGG GTTATTATTC CATCTTTTAT TCTTAATTAT ATGCTAATTA GGGTAAAAGA 661 AGGAGGGTTG AATAAGAAAA AGAAAAGAAC AGAAAGAGAG AGAAGGAGAA TCGAT Predicted gene structure (within gDNA segment 8397 to 4068): Exon 1 5206 4668 ( 539 n); cDNA 161 715 ( 555 n); score: 0.862 PPA cDNA 18 1 MATCH C06HBa0024L21.1-7- SGN-E550335- 0.862 539 0.754 C PGS_C06HBa0024L21.1-7-_SGN-E550335- (5206 4668) Alignment (genomic DNA sequence = upper lines): TGTAACGACC TGTTTAGTCG TTTTGAGCAG CAGATTTTAT TTCTGGAAAA ACAGGCTGAG 5147 |||||||||| |||||||||| ||||||| || |||||||||| || ||||||| ||||| |||| TGTAACGACC TGTTTAGTCG TTTTGAGTAG CAGATTTTAT TTTTGGAAAA ACAGGTTGAG 220 ACGACGGAAC CTACGACGGA CCGTCATGAG TACGACGGAC CGTCGAGGGG TCTCGTTTCA 5087 |||||||||| | |||||||| |||||||||| |||| |||| |||||||| | |||||||||| ACGACGGAAC CCACGACGGA CCGTCATGAG CACGATGGAC CGTCGAGGAG TCTCGTTTCA 280 AAACACTTAG AAATTTTGAA ATTGGGTACT GAAAATCGAC TCTCTGAACT TCGTAACGGA 5027 |||||||||| ||||| |||| |||||||||| ||||||||| |||||||||| |||||||||| AAACACTTAG AAATTCTGAA ATTGGGTACT AAAAATCGAC TCTCTGAACT TCGTAACGGA 340 ATGGCAGGAC GGACCGTCAC GGGCGTGACG GACCGTCACA GACTCTTTGG TGGAAATTGA 4967 |||||| ||| |||||||||| |||||||||| |||||||||| || ||||||| |||||||||| ATGGCACGAC GGACCGTCAC GGGCGTGACG GACCGTCACA GATTCTTTGG TGGAAATTGA 400 GTCTCTGAAC CTT--G-CGA --T------- -GACC-T-GC A-G---GACG GGCCGTCACA 4926 |||||||||| ||| | ||| | |||| | || | | |||| |||| ||||| GTCTCTGAAC CTTGCGACGA CCTGCAGGAC GGACCGTCGC AGGCACGACG GGCCATCACA 460 GGTTGCGTAA TCCCAGTCTG GGTCGGATTT CTGTTAAGTA ATTTAAGGGG TGTTTTGGAC 4866 |||||||||| |||||||||| |||||||||| || ||| |||||||| ||||||||| GGTTGCGTAA TCCCAGTCTG GGTCGGATTT CT-TTACACG TTTTAAGGGA CGTTTTGGAC 519 TATTCCAGCT TTATTTATAA AGTTAGTGGG TTTATGTTAA TAAGTCTAAT TACTTGGGTG 4806 |||||| || ||| |||||| |||||||||| |||||||||| |||||||||| ||| |||| | TATTCCTACT TTAATTATAA AGTTAGTGGG TTTATGTTAA TAAGTCTAAT TACCTGGGGG 579 TTAAAAGAGG TAACCTTGAG TAAATTAGTG GGTTATTATT GCCATCTTTT ATTCTTAATT 4746 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| |||||||||| TTAAAAGAGG TAACCTTGAG TAAATTAGTG GGTTATTATT -CCATCTTTT ATTCTTAATT 638 ATATGCTAAT TAGGGTAAAA GAAGGAGGGT TTGAATAAGA AAAAGAAAAG AACAGAAAGA 4686 |||||||||| |||||||||| ||||||||| |||||||||| |||||||||| |||||||||| ATATGCTAAT TAGGGTAAAA GAAGGAGGG- TTGAATAAGA AAAAGAAAAG AACAGAAAGA 697 GAGAGAAGGA GAATCGAT 4668 |||||||||| |||||||| GAGAGAAGGA GAATCGAT 715 hqPGS_C06HBa0024L21.1-7-_SGN-E550335- (5206 4668) ******************************************************************************** EST sequence 15 -strand 720 n (File: SGN-E389834-) 1 CCCTCGATTT TTTTTTTTTT TTCACGAATA GCTCAATGAA GAACGAGTAA ATTTTTATAT 61 TTCATGGCAT ATTTTTTCAT TAATTCATGG TCGAGAAAAT CTTCGTTTCT AATAGTGTTA 121 TAAATCGTAA AATAATAATG ATATTTAAGT AGGACGATCA TAAATGTAAC GTCCTGTTTA 181 GTCGTTCTGA GTAGCAGATT TTATTTTTGG AAAAACAGGT TGAGTCGACG TAACCCACGA 241 CGGACCGTCA TGAGCACGAT GGACCGTCGA GGAGTCTCGT TTCAAAACAC TTAGAAATTC 301 TGAAATTGGG TACTAAAAAT CGACTCTCTG AACTTCGTAA CGGAATGGCA CGACGGACCG 361 TCACGGGCGT GACGGACCGT CACAGACTCT TTGGTGGAAA TTGAGTCTCT GAACCTTGCG 421 ACGACCTGCA GGACGGACCG TCGCAGGCAC GACGGGCCAT CACAGGTTGC GTAATCCCAG 481 TCTGGGTCGG ATTTCTTTAC ACGTTTTAAG GGACGTTTTG GACTATTCCT ACTTTAATTA 541 TAAAGTTAGT GGGTTTATGT TAATAAGTCT AATTACCTGG GGGTTAAAAG AGGTAACCTT 601 GAGTAAATTA GTGGGTTATT ATTCCATCTT TTATTCTTAA TTATATGCTA ATTAGGGTAA 661 AAGAAGGAGG GTTTGAATAA GAAAAAGAAA AGAACAGAAA GAGAGAGAAG GAGAATCGAT Predicted gene structure (within gDNA segment 8437 to 4068): Exon 1 5206 4668 ( 539 n); cDNA 165 720 ( 556 n); score: 0.858 PPA cDNA 22 7 MATCH C06HBa0024L21.1-7- SGN-E389834- 0.858 539 0.749 C PGS_C06HBa0024L21.1-7-_SGN-E389834- (5206 4668) Alignment (genomic DNA sequence = upper lines): TGTAACGACC TGTTTAGTCG TTTTGAGCAG CAGATTTTAT TTCTGGAAAA ACAGGCTGAG 5147 ||||||| || |||||||||| || |||| || |||||||||| || ||||||| ||||| |||| TGTAACGTCC TGTTTAGTCG TTCTGAGTAG CAGATTTTAT TTTTGGAAAA ACAGGTTGAG 224 ACGACGGAAC CTACGACGGA CCGTCATGAG TACGACGGAC CGTCGAGGGG TCTCGTTTCA 5087 ||||| ||| | |||||||| |||||||||| |||| |||| |||||||| | |||||||||| TCGACGTAAC CCACGACGGA CCGTCATGAG CACGATGGAC CGTCGAGGAG TCTCGTTTCA 284 AAACACTTAG AAATTTTGAA ATTGGGTACT GAAAATCGAC TCTCTGAACT TCGTAACGGA 5027 |||||||||| ||||| |||| |||||||||| ||||||||| |||||||||| |||||||||| AAACACTTAG AAATTCTGAA ATTGGGTACT AAAAATCGAC TCTCTGAACT TCGTAACGGA 344 ATGGCAGGAC GGACCGTCAC GGGCGTGACG GACCGTCACA GACTCTTTGG TGGAAATTGA 4967 |||||| ||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGGCACGAC GGACCGTCAC GGGCGTGACG GACCGTCACA GACTCTTTGG TGGAAATTGA 404 GTCTCTGAAC CTT--G-CGA --T------- -GACC-T-GC A-G---GACG GGCCGTCACA 4926 |||||||||| ||| | ||| | |||| | || | | |||| |||| ||||| GTCTCTGAAC CTTGCGACGA CCTGCAGGAC GGACCGTCGC AGGCACGACG GGCCATCACA 464 GGTTGCGTAA TCCCAGTCTG GGTCGGATTT CTGTTAAGTA ATTTAAGGGG TGTTTTGGAC 4866 |||||||||| |||||||||| |||||||||| || ||| |||||||| ||||||||| GGTTGCGTAA TCCCAGTCTG GGTCGGATTT CT-TTACACG TTTTAAGGGA CGTTTTGGAC 523 TATTCCAGCT TTATTTATAA AGTTAGTGGG TTTATGTTAA TAAGTCTAAT TACTTGGGTG 4806 |||||| || ||| |||||| |||||||||| |||||||||| |||||||||| ||| |||| | TATTCCTACT TTAATTATAA AGTTAGTGGG TTTATGTTAA TAAGTCTAAT TACCTGGGGG 583 TTAAAAGAGG TAACCTTGAG TAAATTAGTG GGTTATTATT GCCATCTTTT ATTCTTAATT 4746 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| |||||||||| TTAAAAGAGG TAACCTTGAG TAAATTAGTG GGTTATTATT -CCATCTTTT ATTCTTAATT 642 ATATGCTAAT TAGGGTAAAA GAAGGAGGGT TTGAATAAGA AAAAGAAAAG AACAGAAAGA 4686 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATATGCTAAT TAGGGTAAAA GAAGGAGGGT TTGAATAAGA AAAAGAAAAG AACAGAAAGA 702 GAGAGAAGGA GAATCGAT 4668 |||||||||| |||||||| GAGAGAAGGA GAATCGAT 720 hqPGS_C06HBa0024L21.1-7-_SGN-E389834- (5206 4668) ******************************************************************************** EST sequence 16 -strand 717 n (File: SGN-E550484-) 1 TTTTTTTTTT TTTTTTTATG AATTAGCTCA ATGAAAAATG AGTAAATTTT TTATATTTTA 61 TGGCATAATT TTTTCATTAA TTCATGGTTG AGAAAATCTT TGTTTCTAAT AGTGTTATAA 121 ATCGTAAAAT AATAATAATA TTTAAGTAGG AAGAACATAA ATGTAACGAC CTGTTTAGTC 181 GTTTTGAGTA GCAGATTTTA TTTTTGGAAA AACAGGTTGA GACGACGGAA CCCACGACGG 241 ACCGTCATGA GCACGATGGA CCGTCGAGGA GTCTCGTTTC AAAACACTTA GAAATTCTGA 301 AATTGGGTAC TAAAAATCGA CTCTCTGAAC TTCGTAACGG AATGGCACGA CGGACCGTCA 361 CGGGCGTGAC GGACCGTCAC AGACTCTTTG GTGGAAATTG AGTCTCTGAA CCTTGCGACG 421 ACCTGCAGGA CGGACCGTCG CAGGCACGAC GGGCCATCAC AGGTTGCGTA ATCCCAGTCT 481 GGGTCGGATT TCTTTACACG TTTTAAGGGA CGTTTTGGAC TATTCCTACT TTAATTATAA 541 AGTTAGTGGG TTTATGTTAA TAAGTCTAAT TACCTGGGGG TTAAAAGAGG TAACCTTGAG 601 TAAATTAGTG GGTTATTATT CCATCTTTTA TTCTTAATTA TATGCTAATT AGGGTAAAAG 661 AAGGAGGGTT TGAATAAGAA AAAGAAAAGA ACAGAAAGAG AGAGAAGGAG AATCGAT Predicted gene structure (within gDNA segment 8407 to 4068): Exon 1 5206 4668 ( 539 n); cDNA 162 717 ( 556 n); score: 0.865 PPA cDNA 19 1 MATCH C06HBa0024L21.1-7- SGN-E550484- 0.865 539 0.752 C PGS_C06HBa0024L21.1-7-_SGN-E550484- (5206 4668) Alignment (genomic DNA sequence = upper lines): TGTAACGACC TGTTTAGTCG TTTTGAGCAG CAGATTTTAT TTCTGGAAAA ACAGGCTGAG 5147 |||||||||| |||||||||| ||||||| || |||||||||| || ||||||| ||||| |||| TGTAACGACC TGTTTAGTCG TTTTGAGTAG CAGATTTTAT TTTTGGAAAA ACAGGTTGAG 221 ACGACGGAAC CTACGACGGA CCGTCATGAG TACGACGGAC CGTCGAGGGG TCTCGTTTCA 5087 |||||||||| | |||||||| |||||||||| |||| |||| |||||||| | |||||||||| ACGACGGAAC CCACGACGGA CCGTCATGAG CACGATGGAC CGTCGAGGAG TCTCGTTTCA 281 AAACACTTAG AAATTTTGAA ATTGGGTACT GAAAATCGAC TCTCTGAACT TCGTAACGGA 5027 |||||||||| ||||| |||| |||||||||| ||||||||| |||||||||| |||||||||| AAACACTTAG AAATTCTGAA ATTGGGTACT AAAAATCGAC TCTCTGAACT TCGTAACGGA 341 ATGGCAGGAC GGACCGTCAC GGGCGTGACG GACCGTCACA GACTCTTTGG TGGAAATTGA 4967 |||||| ||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGGCACGAC GGACCGTCAC GGGCGTGACG GACCGTCACA GACTCTTTGG TGGAAATTGA 401 GTCTCTGAAC CTT--G-CGA --T------- -GACC-T-GC A-G---GACG GGCCGTCACA 4926 |||||||||| ||| | ||| | |||| | || | | |||| |||| ||||| GTCTCTGAAC CTTGCGACGA CCTGCAGGAC GGACCGTCGC AGGCACGACG GGCCATCACA 461 GGTTGCGTAA TCCCAGTCTG GGTCGGATTT CTGTTAAGTA ATTTAAGGGG TGTTTTGGAC 4866 |||||||||| |||||||||| |||||||||| || ||| |||||||| ||||||||| GGTTGCGTAA TCCCAGTCTG GGTCGGATTT CT-TTACACG TTTTAAGGGA CGTTTTGGAC 520 TATTCCAGCT TTATTTATAA AGTTAGTGGG TTTATGTTAA TAAGTCTAAT TACTTGGGTG 4806 |||||| || ||| |||||| |||||||||| |||||||||| |||||||||| ||| |||| | TATTCCTACT TTAATTATAA AGTTAGTGGG TTTATGTTAA TAAGTCTAAT TACCTGGGGG 580 TTAAAAGAGG TAACCTTGAG TAAATTAGTG GGTTATTATT GCCATCTTTT ATTCTTAATT 4746 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| |||||||||| TTAAAAGAGG TAACCTTGAG TAAATTAGTG GGTTATTATT -CCATCTTTT ATTCTTAATT 639 ATATGCTAAT TAGGGTAAAA GAAGGAGGGT TTGAATAAGA AAAAGAAAAG AACAGAAAGA 4686 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATATGCTAAT TAGGGTAAAA GAAGGAGGGT TTGAATAAGA AAAAGAAAAG AACAGAAAGA 699 GAGAGAAGGA GAATCGAT 4668 |||||||||| |||||||| GAGAGAAGGA GAATCGAT 717 hqPGS_C06HBa0024L21.1-7-_SGN-E550484- (5206 4668) ******************************************************************************** EST sequence 18 -strand 713 n (File: SGN-E550464-) 1 TTTTTTTTTT TTTTATGAAT TAGCTCAATG AAAAATGAGT AAATTTTTTA TATCTTATGG 61 CATAATTTTT CATTAATTCA TGGTAGAGAA AATCTTTGTT TCTAATAGTG TTATAAATCG 121 TAAAATAATA ATAATATTTA AGTAGGAAGA ACATAAATGT ANCGACCTGT TTAGTCGTTT 181 TGAGTAGCAG ATTTTATTTT TGGAAAAACA GGTTGAGACG ACGGAACCCA CGACGGACCG 241 TCATGAGCAC GATGGACCGT CGAGGAGTCT CGTTTCAAAA CACTTAGAAA TTCTGAAATT 301 GGGTACTAAA AATCGACTCT CTGAACTTCG TAACGGAATG GCACGACGGA CCGTCACGGG 361 CGTGACGGAC CGTCACAGAC TCTTTGGTGG AAATTGAGTC TCTGAACCTT GCGACGACCT 421 GCAGGACGGA CCGTCGCAGG CACGACGGGC CATCACAGGT TGCGTAATCC CAGTCTGGGT 481 CGGATTTCTT TACACGTTTT AAGGGACGTT TTGGACTATT CCTACTTTAA TTATAAAGTT 541 AGTGGGTTTA TGTTAATAAG TCTAATTACC TGGGGGTTAA AAGAGGTAAC CTTGAGTAAA 601 TTAGTGGGTT ATTATTCCAT CTTTTATTCT TAATTATATG CTAATTAGGG TAAAAGAAGG 661 AGGGTTTGAA TAAGAAAAAG AAAAGAACAG AAAGAGAGAG AAGGAGAATC GAT Predicted gene structure (within gDNA segment 8967 to 4068): Exon 1 5206 4668 ( 539 n); cDNA 158 713 ( 556 n); score: 0.864 PPA cDNA 16 1 MATCH C06HBa0024L21.1-7- SGN-E550464- 0.864 539 0.756 C PGS_C06HBa0024L21.1-7-_SGN-E550464- (5206 4668) Alignment (genomic DNA sequence = upper lines): TGTAACGACC TGTTTAGTCG TTTTGAGCAG CAGATTTTAT TTCTGGAAAA ACAGGCTGAG 5147 |||| ||||| |||||||||| ||||||| || |||||||||| || ||||||| ||||| |||| TGTANCGACC TGTTTAGTCG TTTTGAGTAG CAGATTTTAT TTTTGGAAAA ACAGGTTGAG 217 ACGACGGAAC CTACGACGGA CCGTCATGAG TACGACGGAC CGTCGAGGGG TCTCGTTTCA 5087 |||||||||| | |||||||| |||||||||| |||| |||| |||||||| | |||||||||| ACGACGGAAC CCACGACGGA CCGTCATGAG CACGATGGAC CGTCGAGGAG TCTCGTTTCA 277 AAACACTTAG AAATTTTGAA ATTGGGTACT GAAAATCGAC TCTCTGAACT TCGTAACGGA 5027 |||||||||| ||||| |||| |||||||||| ||||||||| |||||||||| |||||||||| AAACACTTAG AAATTCTGAA ATTGGGTACT AAAAATCGAC TCTCTGAACT TCGTAACGGA 337 ATGGCAGGAC GGACCGTCAC GGGCGTGACG GACCGTCACA GACTCTTTGG TGGAAATTGA 4967 |||||| ||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGGCACGAC GGACCGTCAC GGGCGTGACG GACCGTCACA GACTCTTTGG TGGAAATTGA 397 GTCTCTGAAC CTT--G-CGA --T------- -GACC-T-GC A-G---GACG GGCCGTCACA 4926 |||||||||| ||| | ||| | |||| | || | | |||| |||| ||||| GTCTCTGAAC CTTGCGACGA CCTGCAGGAC GGACCGTCGC AGGCACGACG GGCCATCACA 457 GGTTGCGTAA TCCCAGTCTG GGTCGGATTT CTGTTAAGTA ATTTAAGGGG TGTTTTGGAC 4866 |||||||||| |||||||||| |||||||||| || ||| |||||||| ||||||||| GGTTGCGTAA TCCCAGTCTG GGTCGGATTT CT-TTACACG TTTTAAGGGA CGTTTTGGAC 516 TATTCCAGCT TTATTTATAA AGTTAGTGGG TTTATGTTAA TAAGTCTAAT TACTTGGGTG 4806 |||||| || ||| |||||| |||||||||| |||||||||| |||||||||| ||| |||| | TATTCCTACT TTAATTATAA AGTTAGTGGG TTTATGTTAA TAAGTCTAAT TACCTGGGGG 576 TTAAAAGAGG TAACCTTGAG TAAATTAGTG GGTTATTATT GCCATCTTTT ATTCTTAATT 4746 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| |||||||||| TTAAAAGAGG TAACCTTGAG TAAATTAGTG GGTTATTATT -CCATCTTTT ATTCTTAATT 635 ATATGCTAAT TAGGGTAAAA GAAGGAGGGT TTGAATAAGA AAAAGAAAAG AACAGAAAGA 4686 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATATGCTAAT TAGGGTAAAA GAAGGAGGGT TTGAATAAGA AAAAGAAAAG AACAGAAAGA 695 GAGAGAAGGA GAATCGAT 4668 |||||||||| |||||||| GAGAGAAGGA GAATCGAT 713 hqPGS_C06HBa0024L21.1-7-_SGN-E550464- (5206 4668) ******************************************************************************** EST sequence 19 -strand 713 n (File: SGN-E549941-) 1 TTTTTTTTTT TTTATGAATT AGCTCAATGA AAAATGAGTA AATTTTTTAT ATTTTGATGG 61 CATAATTTTT CATTAATCAT NGGTCGAGAA AATCTTTGTT TCTAATAGTG TTATAAATCG 121 TAAAATAATA ATAATATTTA AGTAGGAAGA ACATAAATGT AACGACCTGT TTAGTCGTTT 181 TGAGTAGCAG ATATTATTTT TGGAAAAACA GGTTGAGACG ACGGAACCCA CGACGGACCG 241 TCATGAGCAC GATGGACCGT CGAGGAGTCT CGTTTCAAAA CACTTAGAAA TTCTGAAATT 301 GGGTACTAAA AATCGACTCT CTGAACTTCG TAACGGAATG GCACGACGGA CCGTCACGGG 361 CGTGACGGAC CGTCACAGAC TCTTTGGTGG AAATTGAGTC TCTGAACCTT GCGACGACCT 421 GCAGGACGGA CCGTCGCAGG CACGACGGGC CATCACAGGT TGCGTAATCC CAGTCTGGGT 481 CGGATTTCTT TACACGTTTT AAGGGACGTT TTGGACTATT CCTACTTTAA TTATAAAGTT 541 AGTGGGTTTA TGTTAATAAG TCTAATTACC TGGGGGTTAA AAGAGGTAAC CTTGAGTAAA 601 TTAGTGGGTT ATTATTCCAT CTTTTATTCT TAATTATATG CTAATTAGGG TAAAAGAAGG 661 AGGGTTTGAA TAAGAAAAAG AAAAGAACAG AAAGAGAGAG AAGGAGAATC GAT Predicted gene structure (within gDNA segment 8967 to 4068): Exon 1 5206 4668 ( 539 n); cDNA 158 713 ( 556 n); score: 0.864 PPA cDNA 15 1 MATCH C06HBa0024L21.1-7- SGN-E549941- 0.864 539 0.756 C PGS_C06HBa0024L21.1-7-_SGN-E549941- (5206 4668) Alignment (genomic DNA sequence = upper lines): TGTAACGACC TGTTTAGTCG TTTTGAGCAG CAGATTTTAT TTCTGGAAAA ACAGGCTGAG 5147 |||||||||| |||||||||| ||||||| || ||||| |||| || ||||||| ||||| |||| TGTAACGACC TGTTTAGTCG TTTTGAGTAG CAGATATTAT TTTTGGAAAA ACAGGTTGAG 217 ACGACGGAAC CTACGACGGA CCGTCATGAG TACGACGGAC CGTCGAGGGG TCTCGTTTCA 5087 |||||||||| | |||||||| |||||||||| |||| |||| |||||||| | |||||||||| ACGACGGAAC CCACGACGGA CCGTCATGAG CACGATGGAC CGTCGAGGAG TCTCGTTTCA 277 AAACACTTAG AAATTTTGAA ATTGGGTACT GAAAATCGAC TCTCTGAACT TCGTAACGGA 5027 |||||||||| ||||| |||| |||||||||| ||||||||| |||||||||| |||||||||| AAACACTTAG AAATTCTGAA ATTGGGTACT AAAAATCGAC TCTCTGAACT TCGTAACGGA 337 ATGGCAGGAC GGACCGTCAC GGGCGTGACG GACCGTCACA GACTCTTTGG TGGAAATTGA 4967 |||||| ||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGGCACGAC GGACCGTCAC GGGCGTGACG GACCGTCACA GACTCTTTGG TGGAAATTGA 397 GTCTCTGAAC CTT--G-CGA --T------- -GACC-T-GC A-G---GACG GGCCGTCACA 4926 |||||||||| ||| | ||| | |||| | || | | |||| |||| ||||| GTCTCTGAAC CTTGCGACGA CCTGCAGGAC GGACCGTCGC AGGCACGACG GGCCATCACA 457 GGTTGCGTAA TCCCAGTCTG GGTCGGATTT CTGTTAAGTA ATTTAAGGGG TGTTTTGGAC 4866 |||||||||| |||||||||| |||||||||| || ||| |||||||| ||||||||| GGTTGCGTAA TCCCAGTCTG GGTCGGATTT CT-TTACACG TTTTAAGGGA CGTTTTGGAC 516 TATTCCAGCT TTATTTATAA AGTTAGTGGG TTTATGTTAA TAAGTCTAAT TACTTGGGTG 4806 |||||| || ||| |||||| |||||||||| |||||||||| |||||||||| ||| |||| | TATTCCTACT TTAATTATAA AGTTAGTGGG TTTATGTTAA TAAGTCTAAT TACCTGGGGG 576 TTAAAAGAGG TAACCTTGAG TAAATTAGTG GGTTATTATT GCCATCTTTT ATTCTTAATT 4746 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| |||||||||| TTAAAAGAGG TAACCTTGAG TAAATTAGTG GGTTATTATT -CCATCTTTT ATTCTTAATT 635 ATATGCTAAT TAGGGTAAAA GAAGGAGGGT TTGAATAAGA AAAAGAAAAG AACAGAAAGA 4686 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATATGCTAAT TAGGGTAAAA GAAGGAGGGT TTGAATAAGA AAAAGAAAAG AACAGAAAGA 695 GAGAGAAGGA GAATCGAT 4668 |||||||||| |||||||| GAGAGAAGGA GAATCGAT 713 hqPGS_C06HBa0024L21.1-7-_SGN-E549941- (5206 4668) ******************************************************************************** EST sequence 37 -strand 711 n (File: SGN-E396039-) 1 TTTTTTTTTT TGAATTAGCT CCAAGAAAAA ATGAGTAAAT TTTTTTTATT TTTATGGCAT 61 AATTTTTTCA TTAATTCATG GTGGAGAAAA TCTTTGTTTT TAATAGTGTT ATAAATCGTA 121 AAATAATAAT AATATTTAAG TAGGAAGAAC ATAAATGTAA CGACCTGTTT AGTCGTTTTG 181 AGTAGCAGAT TTTATTTTTG GAAAAACAGG TTGAGACGAC GGAACCCACG ACGGACCGTC 241 ATGAGCACGA TGGACCGTCG AGGAGTCTCG TTTCAAAACA CTTAGAAATT CTGAAATTGG 301 GTACTAAAAA TCGACTCTCT GAACTTCGTA ACGGAATGGC ACGACGGACC GTCACGGGCG 361 TGACGGACCG TCACAGACTC TTTGGTGGAA ATTGAGTCTC TGAACCTTGC GACGACCTGC 421 AGGACGGACC GTCGCAGGCA CGACGGGCCA TCACAGGTTG CGTAATCCCA GTCTGGGTCG 481 GATTTCTTTA CACGTTTTAA GGGACGTTTT GGACTATTCC TACTTTAATT ATAAAGTTAG 541 TGGGTTTATG TTAATAAGTC TAATTACCTG GGGGTTAAAA GAGGTAACCT TGAGTAAATT 601 AGTGGGTTAT TATTCCATCT TTTATTCTTA ATTATATGCT AATTAGGGTA AAAGAAGGAG 661 GGTTTGAATA AGAAAAAGAA AAGAACAGAA AGAGAGAGAA GGAGAATCGA T Predicted gene structure (within gDNA segment 8347 to 4068): Exon 1 5206 4668 ( 539 n); cDNA 156 711 ( 556 n); score: 0.865 PPA cDNA 50 40 MATCH C06HBa0024L21.1-7- SGN-E396039- 0.865 539 0.758 C PGS_C06HBa0024L21.1-7-_SGN-E396039- (5206 4668) Alignment (genomic DNA sequence = upper lines): TGTAACGACC TGTTTAGTCG TTTTGAGCAG CAGATTTTAT TTCTGGAAAA ACAGGCTGAG 5147 |||||||||| |||||||||| ||||||| || |||||||||| || ||||||| ||||| |||| TGTAACGACC TGTTTAGTCG TTTTGAGTAG CAGATTTTAT TTTTGGAAAA ACAGGTTGAG 215 ACGACGGAAC CTACGACGGA CCGTCATGAG TACGACGGAC CGTCGAGGGG TCTCGTTTCA 5087 |||||||||| | |||||||| |||||||||| |||| |||| |||||||| | |||||||||| ACGACGGAAC CCACGACGGA CCGTCATGAG CACGATGGAC CGTCGAGGAG TCTCGTTTCA 275 AAACACTTAG AAATTTTGAA ATTGGGTACT GAAAATCGAC TCTCTGAACT TCGTAACGGA 5027 |||||||||| ||||| |||| |||||||||| ||||||||| |||||||||| |||||||||| AAACACTTAG AAATTCTGAA ATTGGGTACT AAAAATCGAC TCTCTGAACT TCGTAACGGA 335 ATGGCAGGAC GGACCGTCAC GGGCGTGACG GACCGTCACA GACTCTTTGG TGGAAATTGA 4967 |||||| ||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGGCACGAC GGACCGTCAC GGGCGTGACG GACCGTCACA GACTCTTTGG TGGAAATTGA 395 GTCTCTGAAC CTT--G-CGA --T------- -GACC-T-GC A-G---GACG GGCCGTCACA 4926 |||||||||| ||| | ||| | |||| | || | | |||| |||| ||||| GTCTCTGAAC CTTGCGACGA CCTGCAGGAC GGACCGTCGC AGGCACGACG GGCCATCACA 455 GGTTGCGTAA TCCCAGTCTG GGTCGGATTT CTGTTAAGTA ATTTAAGGGG TGTTTTGGAC 4866 |||||||||| |||||||||| |||||||||| || ||| |||||||| ||||||||| GGTTGCGTAA TCCCAGTCTG GGTCGGATTT CT-TTACACG TTTTAAGGGA CGTTTTGGAC 514 TATTCCAGCT TTATTTATAA AGTTAGTGGG TTTATGTTAA TAAGTCTAAT TACTTGGGTG 4806 |||||| || ||| |||||| |||||||||| |||||||||| |||||||||| ||| |||| | TATTCCTACT TTAATTATAA AGTTAGTGGG TTTATGTTAA TAAGTCTAAT TACCTGGGGG 574 TTAAAAGAGG TAACCTTGAG TAAATTAGTG GGTTATTATT GCCATCTTTT ATTCTTAATT 4746 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| |||||||||| TTAAAAGAGG TAACCTTGAG TAAATTAGTG GGTTATTATT -CCATCTTTT ATTCTTAATT 633 ATATGCTAAT TAGGGTAAAA GAAGGAGGGT TTGAATAAGA AAAAGAAAAG AACAGAAAGA 4686 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATATGCTAAT TAGGGTAAAA GAAGGAGGGT TTGAATAAGA AAAAGAAAAG AACAGAAAGA 693 GAGAGAAGGA GAATCGAT 4668 |||||||||| |||||||| GAGAGAAGGA GAATCGAT 711 hqPGS_C06HBa0024L21.1-7-_SGN-E396039- (5206 4668) ******************************************************************************** EST sequence 38 -strand 618 n (File: SGN-E396054-) 1 TTGTTTCTAA TAGTGTTATA AATCGTAAAA TAATAATAAT ATTTAAGTAG GAAGAACATA 61 AATGTAACGA CCTGTTTAGT CGTTTTGAGT AGCAGATTTT ATTTTTGGAA AAACAGGTTG 121 AGACGACGGA ACCCACGACG GACCGTCATG AGCACGATGG ACCGTCGAGG AGTCTCGTTT 181 CAAAACACTT AGAAATTCTG AAATTGGGTA CTAAAAATCG ACTCTCTGAA CTTCGTAACG 241 GAATGGCACG ACGGACCGTC ACGGGCGTGA CGGACCGTCA CAGACTCTTT GGTGGAAATT 301 GAGTCTCTGA ACCTTGCGAC GACCTGCAGG ACGGACCGTC GCAGGCACGA CGGGCCATCA 361 CAGGTTGCGT AATCCCAGTC TGGGTCGGAT TTCTTTACAC GTTTTAAGGG ACGTTTTGGA 421 CTATTCCTAC TTTAATTATA AAGTTAGTGG GTTTATGTTA ATAAGTCTAA TTACCTGGGG 481 GTTAAAAGAG GTAACCTTGA GTAAATTAGT GGGTTATTAT TCCATCTTTT ATTCTTAATT 541 ATATGCTAAT TAGGGTAAAA GAAGGAGGGT TTGAATAAGA AAAAGAAAAG AACAGAAAGA 601 GAGAGAAGGA GAATCGAT Predicted gene structure (within gDNA segment 7417 to 4068): Exon 1 5206 4668 ( 539 n); cDNA 63 618 ( 556 n); score: 0.865 MATCH C06HBa0024L21.1-7- SGN-E396054- 0.865 539 0.872 C PGS_C06HBa0024L21.1-7-_SGN-E396054- (5206 4668) Alignment (genomic DNA sequence = upper lines): TGTAACGACC TGTTTAGTCG TTTTGAGCAG CAGATTTTAT TTCTGGAAAA ACAGGCTGAG 5147 |||||||||| |||||||||| ||||||| || |||||||||| || ||||||| ||||| |||| TGTAACGACC TGTTTAGTCG TTTTGAGTAG CAGATTTTAT TTTTGGAAAA ACAGGTTGAG 122 ACGACGGAAC CTACGACGGA CCGTCATGAG TACGACGGAC CGTCGAGGGG TCTCGTTTCA 5087 |||||||||| | |||||||| |||||||||| |||| |||| |||||||| | |||||||||| ACGACGGAAC CCACGACGGA CCGTCATGAG CACGATGGAC CGTCGAGGAG TCTCGTTTCA 182 AAACACTTAG AAATTTTGAA ATTGGGTACT GAAAATCGAC TCTCTGAACT TCGTAACGGA 5027 |||||||||| ||||| |||| |||||||||| ||||||||| |||||||||| |||||||||| AAACACTTAG AAATTCTGAA ATTGGGTACT AAAAATCGAC TCTCTGAACT TCGTAACGGA 242 ATGGCAGGAC GGACCGTCAC GGGCGTGACG GACCGTCACA GACTCTTTGG TGGAAATTGA 4967 |||||| ||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGGCACGAC GGACCGTCAC GGGCGTGACG GACCGTCACA GACTCTTTGG TGGAAATTGA 302 GTCTCTGAAC CTT--G-CGA --T------- -GACC-T-GC A-G---GACG GGCCGTCACA 4926 |||||||||| ||| | ||| | |||| | || | | |||| |||| ||||| GTCTCTGAAC CTTGCGACGA CCTGCAGGAC GGACCGTCGC AGGCACGACG GGCCATCACA 362 GGTTGCGTAA TCCCAGTCTG GGTCGGATTT CTGTTAAGTA ATTTAAGGGG TGTTTTGGAC 4866 |||||||||| |||||||||| |||||||||| || ||| |||||||| ||||||||| GGTTGCGTAA TCCCAGTCTG GGTCGGATTT CT-TTACACG TTTTAAGGGA CGTTTTGGAC 421 TATTCCAGCT TTATTTATAA AGTTAGTGGG TTTATGTTAA TAAGTCTAAT TACTTGGGTG 4806 |||||| || ||| |||||| |||||||||| |||||||||| |||||||||| ||| |||| | TATTCCTACT TTAATTATAA AGTTAGTGGG TTTATGTTAA TAAGTCTAAT TACCTGGGGG 481 TTAAAAGAGG TAACCTTGAG TAAATTAGTG GGTTATTATT GCCATCTTTT ATTCTTAATT 4746 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| |||||||||| TTAAAAGAGG TAACCTTGAG TAAATTAGTG GGTTATTATT -CCATCTTTT ATTCTTAATT 540 ATATGCTAAT TAGGGTAAAA GAAGGAGGGT TTGAATAAGA AAAAGAAAAG AACAGAAAGA 4686 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATATGCTAAT TAGGGTAAAA GAAGGAGGGT TTGAATAAGA AAAAGAAAAG AACAGAAAGA 600 GAGAGAAGGA GAATCGAT 4668 |||||||||| |||||||| GAGAGAAGGA GAATCGAT 618 hqPGS_C06HBa0024L21.1-7-_SGN-E396054- (5206 4668) ******************************************************************************** EST sequence 39 -strand 711 n (File: SGN-E396056-) 1 TTTTTTTTTT ATGAATTAGC TCAAAGAAAA AATGAGTAAA TTTTTATTAT TTTATGGCAT 61 AATTTTTTCA TTAATTCATG GGTGAGAAAA TTTTTGTTTC TAATAGTGTT ATAAATCGTA 121 AAATAATAAT AATATTTAAG TAGGAAGAAC ATAAATGTAA CGACCTGTTT AGTCGTTTTG 181 AGTAGCAGAT TTTATTTTTG GAAAAACAGG TTGAGACGAC GGAACCCACG ACGGACCGTC 241 ATGAGCACGA TGGACCGTCG AGGAGTCTCG TTTCAAAACA CTTAGAAATT CTGAAATTGG 301 GTACTAAAAA TCGACTCTCT GAACTTCGTA ACGGAATGGC ACGACGGACC GTCACGGGCG 361 TGACGGACCG TCACAGACTC TTTGGTGGAA ATTGAGTCTC TGAACCTTGC GACGACCTGC 421 AGGACGGACC GTCGCAGGCA CGACGGGCCA TCACAGGTTG CGTAATCCCA GTCTGGGTCG 481 GATTTCTTTA CACGTTTTAA GGGACGTTTT GGACTATTCC TACTTTAATT ATAAAGTTAG 541 TGGGTTTATG TTAATAAGTC TAATTACCTG GGGGTTAAAA GAGGTAACCT TGAGTAAATT 601 AGTGGGTTAT TATTCCATCT TTTATTCTTA ATTATATGCT AATTAGGGTA AAAGAAGGAG 661 GGTTTGAATA AGAAAAAGAA AAGAACAGAA AGAGAGAGAA GGAGAATCGA T Predicted gene structure (within gDNA segment 8347 to 4068): Exon 1 5206 4668 ( 539 n); cDNA 156 711 ( 556 n); score: 0.865 PPA cDNA 12 1 MATCH C06HBa0024L21.1-7- SGN-E396056- 0.865 539 0.758 C PGS_C06HBa0024L21.1-7-_SGN-E396056- (5206 4668) Alignment (genomic DNA sequence = upper lines): TGTAACGACC TGTTTAGTCG TTTTGAGCAG CAGATTTTAT TTCTGGAAAA ACAGGCTGAG 5147 |||||||||| |||||||||| ||||||| || |||||||||| || ||||||| ||||| |||| TGTAACGACC TGTTTAGTCG TTTTGAGTAG CAGATTTTAT TTTTGGAAAA ACAGGTTGAG 215 ACGACGGAAC CTACGACGGA CCGTCATGAG TACGACGGAC CGTCGAGGGG TCTCGTTTCA 5087 |||||||||| | |||||||| |||||||||| |||| |||| |||||||| | |||||||||| ACGACGGAAC CCACGACGGA CCGTCATGAG CACGATGGAC CGTCGAGGAG TCTCGTTTCA 275 AAACACTTAG AAATTTTGAA ATTGGGTACT GAAAATCGAC TCTCTGAACT TCGTAACGGA 5027 |||||||||| ||||| |||| |||||||||| ||||||||| |||||||||| |||||||||| AAACACTTAG AAATTCTGAA ATTGGGTACT AAAAATCGAC TCTCTGAACT TCGTAACGGA 335 ATGGCAGGAC GGACCGTCAC GGGCGTGACG GACCGTCACA GACTCTTTGG TGGAAATTGA 4967 |||||| ||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGGCACGAC GGACCGTCAC GGGCGTGACG GACCGTCACA GACTCTTTGG TGGAAATTGA 395 GTCTCTGAAC CTT--G-CGA --T------- -GACC-T-GC A-G---GACG GGCCGTCACA 4926 |||||||||| ||| | ||| | |||| | || | | |||| |||| ||||| GTCTCTGAAC CTTGCGACGA CCTGCAGGAC GGACCGTCGC AGGCACGACG GGCCATCACA 455 GGTTGCGTAA TCCCAGTCTG GGTCGGATTT CTGTTAAGTA ATTTAAGGGG TGTTTTGGAC 4866 |||||||||| |||||||||| |||||||||| || ||| |||||||| ||||||||| GGTTGCGTAA TCCCAGTCTG GGTCGGATTT CT-TTACACG TTTTAAGGGA CGTTTTGGAC 514 TATTCCAGCT TTATTTATAA AGTTAGTGGG TTTATGTTAA TAAGTCTAAT TACTTGGGTG 4806 |||||| || ||| |||||| |||||||||| |||||||||| |||||||||| ||| |||| | TATTCCTACT TTAATTATAA AGTTAGTGGG TTTATGTTAA TAAGTCTAAT TACCTGGGGG 574 TTAAAAGAGG TAACCTTGAG TAAATTAGTG GGTTATTATT GCCATCTTTT ATTCTTAATT 4746 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| |||||||||| TTAAAAGAGG TAACCTTGAG TAAATTAGTG GGTTATTATT -CCATCTTTT ATTCTTAATT 633 ATATGCTAAT TAGGGTAAAA GAAGGAGGGT TTGAATAAGA AAAAGAAAAG AACAGAAAGA 4686 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATATGCTAAT TAGGGTAAAA GAAGGAGGGT TTGAATAAGA AAAAGAAAAG AACAGAAAGA 693 GAGAGAAGGA GAATCGAT 4668 |||||||||| |||||||| GAGAGAAGGA GAATCGAT 711 hqPGS_C06HBa0024L21.1-7-_SGN-E396056- (5206 4668) ******************************************************************************** EST sequence 40 -strand 610 n (File: SGN-E396058-) 1 AATAGTGTTA TAAATCGTAA AATAATAATA ATAGTTAACT ATGAAGAACC TAAATGTAAC 61 GACCTGTTTA GTCGTTGTGA GTAGCAGATT TTATTTTTGG AAACACAGGT TGAGACGACG 121 GAACCCACGA CGGACCGTCA TGAGCACGAT GGACCGTCGA GGAGTCTCGT TTCAAAACAC 181 TTAGAAATTC TGAAATTGGG TACTAAAAAT CGACTCTCTG AACTTCGTAA CGGAATGGCA 241 CGACGGACCG TCACGGGCGT GACGGACCGT CACAGACTCT TTGGTGGAAA TTGAGTCTCT 301 GAACCTTGCG ACGACCTGCA GGACGGACCG TCGCAGGCAC GACGGGCCAT CACAGGTTGC 361 GTAATCCCAG TCTGGGTCGG ATTTCTTTAC ACGTTTTAAG GGACGTTTTG GACTATTCCT 421 ACTTTAATTA TAAAGTTAGT GGGTTTATGT TAATAAGTCT AATTACCTGG GGGTTAAAAG 481 AGGTAACCTT GAGTAAATTA GTGGGTTATT ATTCCATCTT TTATTCTTAA TTATATGCTA 541 ATTAGGGTAA AAGAAGGAGG GTTTGAATAA GAAAAAGAAA AGAACAGAAA GAGAGAGAAG 601 GAGAATCGAT Predicted gene structure (within gDNA segment 7337 to 4068): Exon 1 5206 4668 ( 539 n); cDNA 55 610 ( 556 n); score: 0.862 MATCH C06HBa0024L21.1-7- SGN-E396058- 0.862 539 0.884 C PGS_C06HBa0024L21.1-7-_SGN-E396058- (5206 4668) Alignment (genomic DNA sequence = upper lines): TGTAACGACC TGTTTAGTCG TTTTGAGCAG CAGATTTTAT TTCTGGAAAA ACAGGCTGAG 5147 |||||||||| |||||||||| || |||| || |||||||||| || |||||| ||||| |||| TGTAACGACC TGTTTAGTCG TTGTGAGTAG CAGATTTTAT TTTTGGAAAC ACAGGTTGAG 114 ACGACGGAAC CTACGACGGA CCGTCATGAG TACGACGGAC CGTCGAGGGG TCTCGTTTCA 5087 |||||||||| | |||||||| |||||||||| |||| |||| |||||||| | |||||||||| ACGACGGAAC CCACGACGGA CCGTCATGAG CACGATGGAC CGTCGAGGAG TCTCGTTTCA 174 AAACACTTAG AAATTTTGAA ATTGGGTACT GAAAATCGAC TCTCTGAACT TCGTAACGGA 5027 |||||||||| ||||| |||| |||||||||| ||||||||| |||||||||| |||||||||| AAACACTTAG AAATTCTGAA ATTGGGTACT AAAAATCGAC TCTCTGAACT TCGTAACGGA 234 ATGGCAGGAC GGACCGTCAC GGGCGTGACG GACCGTCACA GACTCTTTGG TGGAAATTGA 4967 |||||| ||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGGCACGAC GGACCGTCAC GGGCGTGACG GACCGTCACA GACTCTTTGG TGGAAATTGA 294 GTCTCTGAAC CTT--G-CGA --T------- -GACC-T-GC A-G---GACG GGCCGTCACA 4926 |||||||||| ||| | ||| | |||| | || | | |||| |||| ||||| GTCTCTGAAC CTTGCGACGA CCTGCAGGAC GGACCGTCGC AGGCACGACG GGCCATCACA 354 GGTTGCGTAA TCCCAGTCTG GGTCGGATTT CTGTTAAGTA ATTTAAGGGG TGTTTTGGAC 4866 |||||||||| |||||||||| |||||||||| || ||| |||||||| ||||||||| GGTTGCGTAA TCCCAGTCTG GGTCGGATTT CT-TTACACG TTTTAAGGGA CGTTTTGGAC 413 TATTCCAGCT TTATTTATAA AGTTAGTGGG TTTATGTTAA TAAGTCTAAT TACTTGGGTG 4806 |||||| || ||| |||||| |||||||||| |||||||||| |||||||||| ||| |||| | TATTCCTACT TTAATTATAA AGTTAGTGGG TTTATGTTAA TAAGTCTAAT TACCTGGGGG 473 TTAAAAGAGG TAACCTTGAG TAAATTAGTG GGTTATTATT GCCATCTTTT ATTCTTAATT 4746 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| |||||||||| TTAAAAGAGG TAACCTTGAG TAAATTAGTG GGTTATTATT -CCATCTTTT ATTCTTAATT 532 ATATGCTAAT TAGGGTAAAA GAAGGAGGGT TTGAATAAGA AAAAGAAAAG AACAGAAAGA 4686 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATATGCTAAT TAGGGTAAAA GAAGGAGGGT TTGAATAAGA AAAAGAAAAG AACAGAAAGA 592 GAGAGAAGGA GAATCGAT 4668 |||||||||| |||||||| GAGAGAAGGA GAATCGAT 610 hqPGS_C06HBa0024L21.1-7-_SGN-E396058- (5206 4668) ******************************************************************************** EST sequence 63 +strand 679 n (File: SGN-E550127+) 1 ATGAGTAATT TTTTATATTT TATGTCATAA TTTTTTCATT AATTCATGGT TGTGCAAATC 61 TTTGTTTCTA ATAGTGTTAT AAATCGTAAA ATAATAATAA TATTTAAGTA GGAAGAACAT 121 AAATGTAACG ACCTGTTTAG TCGTTTTGAG TAGCAGATTT TATTTTTGGA AAAACAGGTT 181 GAGACGACGG AACCCACGAC GGACCGTCAT GAGCACGATG GACCGTCGAG GAGTCTCGTT 241 TCAAAACACT TAGAAATTCT GAAATTGGGT ACTAAAAATC GACTCTCTGA ACTTCGTAAC 301 GGAATGGCAC GACGGACCGT CACGGGCGTG ACGGACCGTC ACAGACTCTT TGGTGGAAAT 361 TGAGTCTCTG AACCTTGCGA CGACCTGCAG GACGGACCGT CGCAGGCACG ACGGGCCATC 421 ACAGGTTGCG TAATCCCAGT CTGGGTCGGA TTTCTTTACA CGTTTTAAGG GACGTTTTGG 481 ACTATTCCTA CTTTAATTAT AAAGTTAGTG GGTTTATGTT AATAAGTCTA ATTACCTGGG 541 GGTTAAAAGA GGTAACCTTG AGTAAATTAG TGGGTTATTA TTCCATCTTT TATTCTTAAT 601 TATATGCTAA TTAGGGTAAA AGAAGGAGGG TTTTGATAAG AAAAAGAAAA GGACAGAAAG 661 AGAGAGAAGG AGAATCGAT Predicted gene structure (within gDNA segment 8017 to 4058): Exon 1 5206 4668 ( 539 n); cDNA 124 679 ( 556 n); score: 0.860 MATCH C06HBa0024L21.1-7- SGN-E550127+ 0.860 539 0.794 C PGS_C06HBa0024L21.1-7-_SGN-E550127+ (5206 4668) Alignment (genomic DNA sequence = upper lines): TGTAACGACC TGTTTAGTCG TTTTGAGCAG CAGATTTTAT TTCTGGAAAA ACAGGCTGAG 5147 |||||||||| |||||||||| ||||||| || |||||||||| || ||||||| ||||| |||| TGTAACGACC TGTTTAGTCG TTTTGAGTAG CAGATTTTAT TTTTGGAAAA ACAGGTTGAG 183 ACGACGGAAC CTACGACGGA CCGTCATGAG TACGACGGAC CGTCGAGGGG TCTCGTTTCA 5087 |||||||||| | |||||||| |||||||||| |||| |||| |||||||| | |||||||||| ACGACGGAAC CCACGACGGA CCGTCATGAG CACGATGGAC CGTCGAGGAG TCTCGTTTCA 243 AAACACTTAG AAATTTTGAA ATTGGGTACT GAAAATCGAC TCTCTGAACT TCGTAACGGA 5027 |||||||||| ||||| |||| |||||||||| ||||||||| |||||||||| |||||||||| AAACACTTAG AAATTCTGAA ATTGGGTACT AAAAATCGAC TCTCTGAACT TCGTAACGGA 303 ATGGCAGGAC GGACCGTCAC GGGCGTGACG GACCGTCACA GACTCTTTGG TGGAAATTGA 4967 |||||| ||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGGCACGAC GGACCGTCAC GGGCGTGACG GACCGTCACA GACTCTTTGG TGGAAATTGA 363 GTCTCTGAAC CTT--G-CGA --T------- -GACC-T-GC A-G---GACG GGCCGTCACA 4926 |||||||||| ||| | ||| | |||| | || | | |||| |||| ||||| GTCTCTGAAC CTTGCGACGA CCTGCAGGAC GGACCGTCGC AGGCACGACG GGCCATCACA 423 GGTTGCGTAA TCCCAGTCTG GGTCGGATTT CTGTTAAGTA ATTTAAGGGG TGTTTTGGAC 4866 |||||||||| |||||||||| |||||||||| || ||| |||||||| ||||||||| GGTTGCGTAA TCCCAGTCTG GGTCGGATTT CT-TTACACG TTTTAAGGGA CGTTTTGGAC 482 TATTCCAGCT TTATTTATAA AGTTAGTGGG TTTATGTTAA TAAGTCTAAT TACTTGGGTG 4806 |||||| || ||| |||||| |||||||||| |||||||||| |||||||||| ||| |||| | TATTCCTACT TTAATTATAA AGTTAGTGGG TTTATGTTAA TAAGTCTAAT TACCTGGGGG 542 TTAAAAGAGG TAACCTTGAG TAAATTAGTG GGTTATTATT GCCATCTTTT ATTCTTAATT 4746 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| |||||||||| TTAAAAGAGG TAACCTTGAG TAAATTAGTG GGTTATTATT -CCATCTTTT ATTCTTAATT 601 ATATGCTAAT TAGGGTAAAA GAAGGAGGGT TTGAATAAGA AAAAGAAAAG AACAGAAAGA 4686 |||||||||| |||||||||| |||||||||| || |||||| |||||||||| ||||||||| ATATGCTAAT TAGGGTAAAA GAAGGAGGGT TTTGATAAGA AAAAGAAAAG GACAGAAAGA 661 GAGAGAAGGA GAATCGAT 4668 |||||||||| |||||||| GAGAGAAGGA GAATCGAT 679 hqPGS_C06HBa0024L21.1-7-_SGN-E550127+ (5206 4668) ******************************************************************************** EST sequence 64 +strand 673 n (File: SGN-E550140+) 1 GTAATTTTTT ATATTTTTGG TCTAATTTTT TGTTAATTCA TGGTTGATAA CATCTTTGTT 61 TCTAATAGTG TTATAAATCG TAAAATAATA ATAATATTTA AGTAGGAAGA ACATAAATGT 121 AACGACCTGT TTAGTCGTTT TGAGTAGCAG ATTTTATTTT TGGAAAAACA GGTTGAGACG 181 ACGGAACCCA CGACGGACCG TCATGAGCAC GATGGACCGT CGAGGAGTCT CGTTTCAAAA 241 CACTTAGAAA TTCTGAAATT GGGTACTAAA AATCGACTCT CTGAACTTCG TAACGGAATG 301 GCACGACGGA CCGTCACGGG CGTGACGGAC CGTCACAGAC TCTTTGGTGG AAATTGAGTC 361 TCTGAACCTT GCGACGACCT GCAGGACGGA CCGTCGCAGG CACGACGGGC CATCACAGGT 421 TGCGTAATCC CAGTCTGGGT CGGATTTCTT TACACGTTTT AAGGGACGTT TTGGACTATT 481 CCTACTTTAA TTATAAAGTT AGTGGGTTTA TGTTAATAAG TCTAATTACC TGGGGGTTAA 541 AAGAGGTAAC CTTNGAGTAA TTAGTGGGTT ATTATTCCAT CTTTTATTCT TAATTATATG 601 CTAATTAGGG TAAAAGAAGG AGGGTTTGAA TAAGAAAAAG AAAAGAACAG AAAGAGAGAG 661 AAGGAGAATC GAT Predicted gene structure (within gDNA segment 7957 to 4058): Exon 1 5206 4668 ( 539 n); cDNA 118 673 ( 556 n); score: 0.859 MATCH C06HBa0024L21.1-7- SGN-E550140+ 0.859 539 0.801 C PGS_C06HBa0024L21.1-7-_SGN-E550140+ (5206 4668) Alignment (genomic DNA sequence = upper lines): TGTAACGACC TGTTTAGTCG TTTTGAGCAG CAGATTTTAT TTCTGGAAAA ACAGGCTGAG 5147 |||||||||| |||||||||| ||||||| || |||||||||| || ||||||| ||||| |||| TGTAACGACC TGTTTAGTCG TTTTGAGTAG CAGATTTTAT TTTTGGAAAA ACAGGTTGAG 177 ACGACGGAAC CTACGACGGA CCGTCATGAG TACGACGGAC CGTCGAGGGG TCTCGTTTCA 5087 |||||||||| | |||||||| |||||||||| |||| |||| |||||||| | |||||||||| ACGACGGAAC CCACGACGGA CCGTCATGAG CACGATGGAC CGTCGAGGAG TCTCGTTTCA 237 AAACACTTAG AAATTTTGAA ATTGGGTACT GAAAATCGAC TCTCTGAACT TCGTAACGGA 5027 |||||||||| ||||| |||| |||||||||| ||||||||| |||||||||| |||||||||| AAACACTTAG AAATTCTGAA ATTGGGTACT AAAAATCGAC TCTCTGAACT TCGTAACGGA 297 ATGGCAGGAC GGACCGTCAC GGGCGTGACG GACCGTCACA GACTCTTTGG TGGAAATTGA 4967 |||||| ||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGGCACGAC GGACCGTCAC GGGCGTGACG GACCGTCACA GACTCTTTGG TGGAAATTGA 357 GTCTCTGAAC CTT--G-CGA --T------- -GACC-T-GC A-G---GACG GGCCGTCACA 4926 |||||||||| ||| | ||| | |||| | || | | |||| |||| ||||| GTCTCTGAAC CTTGCGACGA CCTGCAGGAC GGACCGTCGC AGGCACGACG GGCCATCACA 417 GGTTGCGTAA TCCCAGTCTG GGTCGGATTT CTGTTAAGTA ATTTAAGGGG TGTTTTGGAC 4866 |||||||||| |||||||||| |||||||||| || ||| |||||||| ||||||||| GGTTGCGTAA TCCCAGTCTG GGTCGGATTT CT-TTACACG TTTTAAGGGA CGTTTTGGAC 476 TATTCCAGCT TTATTTATAA AGTTAGTGGG TTTATGTTAA TAAGTCTAAT TACTTGGGTG 4806 |||||| || ||| |||||| |||||||||| |||||||||| |||||||||| ||| |||| | TATTCCTACT TTAATTATAA AGTTAGTGGG TTTATGTTAA TAAGTCTAAT TACCTGGGGG 536 TTAAAAGAGG TAACCTT-GA GTAAATTAGT GGGTTATTAT TGCCATCTTT TATTCTTAAT 4747 |||||||||| ||||||| || || ||||||| |||||||||| | |||||||| |||||||||| TTAAAAGAGG TAACCTTNGA GT-AATTAGT GGGTTATTAT T-CCATCTTT TATTCTTAAT 594 TATATGCTAA TTAGGGTAAA AGAAGGAGGG TTTGAATAAG AAAAAGAAAA GAACAGAAAG 4687 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATATGCTAA TTAGGGTAAA AGAAGGAGGG TTTGAATAAG AAAAAGAAAA GAACAGAAAG 654 AGAGAGAAGG AGAATCGAT 4668 |||||||||| ||||||||| AGAGAGAAGG AGAATCGAT 673 hqPGS_C06HBa0024L21.1-7-_SGN-E550140+ (5206 4668) ******************************************************************************** EST sequence 67 +strand 681 n (File: SGN-E389553+) 1 AATGAGTAAT TTTTTATATT TTATTCCATA ATTTTTTCAT TAATTCATGG TTGAGAAAAT 61 CTTTGTTTCT AATAGTGTTA TAAATCGTAA AATAATAATA ATATTTAAGT AGGAACGAAC 121 ATAAATGTAA CGACCTGTTT AGTCGTTTTG AGTAGCAGAT TTTATTTTTG GAAAAACAGG 181 TTGAGACGAC GGAACCCACG ACGGACCGTC ATGAGCACGA TGGACCGTCG AGGAGTCTCG 241 TTTCAAAACA CTTAGAAATT CTGAAATTGG GTACTAAAAA TCGACTCTCT GAACTTCGTA 301 ACGGAATGGC ACGACGGACC GTCACGGGCG TGACGGACCG TCACAGACTC TTTGGTGGAA 361 ATTGAGTCTC TGAACCTTGC GACGACCTGC AGGACGGACC GTCGCAGGCA CGACGGGCCA 421 TCACAGGTTG CGTAATCCCA GTCTGGGTCG GATTTCTTTA CACGTTTTAA GGGACGTTTT 481 GGACTATTCC TACTTTAATT ATAAAGTTAG TGGGTTTATG TTAATAAGTC TAATTACCTG 541 GGGGTTAAAA GAGGTAACCT TGAGTAAATT AGTGGGTTAT TATTCCATCT TTTATTCTTA 601 ATTATATGCT AATTAGGGTA AAAGAAGGAG GGTTTGAATA AGAAAAAGAA AAGAACAGAA 661 AGAGAGAGAA GGAGAATCGA T Predicted gene structure (within gDNA segment 8037 to 4058): Exon 1 5206 4668 ( 539 n); cDNA 126 681 ( 556 n); score: 0.865 MATCH C06HBa0024L21.1-7- SGN-E389553+ 0.865 539 0.791 C PGS_C06HBa0024L21.1-7-_SGN-E389553+ (5206 4668) Alignment (genomic DNA sequence = upper lines): TGTAACGACC TGTTTAGTCG TTTTGAGCAG CAGATTTTAT TTCTGGAAAA ACAGGCTGAG 5147 |||||||||| |||||||||| ||||||| || |||||||||| || ||||||| ||||| |||| TGTAACGACC TGTTTAGTCG TTTTGAGTAG CAGATTTTAT TTTTGGAAAA ACAGGTTGAG 185 ACGACGGAAC CTACGACGGA CCGTCATGAG TACGACGGAC CGTCGAGGGG TCTCGTTTCA 5087 |||||||||| | |||||||| |||||||||| |||| |||| |||||||| | |||||||||| ACGACGGAAC CCACGACGGA CCGTCATGAG CACGATGGAC CGTCGAGGAG TCTCGTTTCA 245 AAACACTTAG AAATTTTGAA ATTGGGTACT GAAAATCGAC TCTCTGAACT TCGTAACGGA 5027 |||||||||| ||||| |||| |||||||||| ||||||||| |||||||||| |||||||||| AAACACTTAG AAATTCTGAA ATTGGGTACT AAAAATCGAC TCTCTGAACT TCGTAACGGA 305 ATGGCAGGAC GGACCGTCAC GGGCGTGACG GACCGTCACA GACTCTTTGG TGGAAATTGA 4967 |||||| ||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGGCACGAC GGACCGTCAC GGGCGTGACG GACCGTCACA GACTCTTTGG TGGAAATTGA 365 GTCTCTGAAC CTT--G-CGA --T------- -GACC-T-GC A-G---GACG GGCCGTCACA 4926 |||||||||| ||| | ||| | |||| | || | | |||| |||| ||||| GTCTCTGAAC CTTGCGACGA CCTGCAGGAC GGACCGTCGC AGGCACGACG GGCCATCACA 425 GGTTGCGTAA TCCCAGTCTG GGTCGGATTT CTGTTAAGTA ATTTAAGGGG TGTTTTGGAC 4866 |||||||||| |||||||||| |||||||||| || ||| |||||||| ||||||||| GGTTGCGTAA TCCCAGTCTG GGTCGGATTT CT-TTACACG TTTTAAGGGA CGTTTTGGAC 484 TATTCCAGCT TTATTTATAA AGTTAGTGGG TTTATGTTAA TAAGTCTAAT TACTTGGGTG 4806 |||||| || ||| |||||| |||||||||| |||||||||| |||||||||| ||| |||| | TATTCCTACT TTAATTATAA AGTTAGTGGG TTTATGTTAA TAAGTCTAAT TACCTGGGGG 544 TTAAAAGAGG TAACCTTGAG TAAATTAGTG GGTTATTATT GCCATCTTTT ATTCTTAATT 4746 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| |||||||||| TTAAAAGAGG TAACCTTGAG TAAATTAGTG GGTTATTATT -CCATCTTTT ATTCTTAATT 603 ATATGCTAAT TAGGGTAAAA GAAGGAGGGT TTGAATAAGA AAAAGAAAAG AACAGAAAGA 4686 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATATGCTAAT TAGGGTAAAA GAAGGAGGGT TTGAATAAGA AAAAGAAAAG AACAGAAAGA 663 GAGAGAAGGA GAATCGAT 4668 |||||||||| |||||||| GAGAGAAGGA GAATCGAT 681 hqPGS_C06HBa0024L21.1-7-_SGN-E389553+ (5206 4668) ******************************************************************************** EST sequence 41 -strand 454 n (File: SGN-E396070-) 1 TCGAGGAGTC TAGTTTCAAA ACAATTAGAA ACTCCCCCCC CCGGTACTAA AAATCGACTC 61 TCTGAACTTC GTAACGGAAT GGCACGACGG ACCGTCACGG GCGTGACGGA CCGTCACAGA 121 CTCTTTGGTG GAAATTGAGT CTCTGAACCT TGCGACGACC TGCAGGACGG ACCGTCGCAG 181 GCACGACGGG CCATCACAGG TTGCGTAATC CCAGTCTGGG TCGGATTTCT TTACACGTTT 241 TAAGGGACGT TTTGGACTAT TCCTACTTTA ATTATAAAGT TAGTGGGTTT ATGTTAATAA 301 GTCTAATTAC CTGGGGGTTA AAAGAGGTAA CCTTGAGTAA ATTAGTGGGT TATTATTCCA 361 TCTTTTATTC TTAATTATAT GCTAATTAGG GTAAAAGAAG GAGGGTTTGA ATAAGAAAAA 421 GAAAAGAACA GAAAGAGAGA GAAGGAGAAT CGAT Predicted gene structure (within gDNA segment 6155 to 4068): Exon 1 5104 4668 ( 437 n); cDNA 1 454 ( 454 n); score: 0.823 MATCH C06HBa0024L21.1-7- SGN-E396070- 0.823 437 0.963 C PGS_C06HBa0024L21.1-7-_SGN-E396070- (5104 4668) Alignment (genomic DNA sequence = upper lines): TCGAGGGGTC TCGTTTCAAA ACACTTAGAA ATTTTGAAAT TGGGTACTGA AAATCGACTC 5045 |||||| ||| | |||||||| ||| |||||| | | |||||| | |||||||||| TCGAGGAGTC TAGTTTCAAA ACAATTAGAA ACTCCCCCCC CCGGTACTAA AAATCGACTC 60 TCTGAACTTC GTAACGGAAT GGCAGGACGG ACCGTCACGG GCGTGACGGA CCGTCACAGA 4985 |||||||||| |||||||||| |||| ||||| |||||||||| |||||||||| |||||||||| TCTGAACTTC GTAACGGAAT GGCACGACGG ACCGTCACGG GCGTGACGGA CCGTCACAGA 120 CTCTTTGGTG GAAATTGAGT CTCTGAACCT TGCGATGACC TGCAGGACGG ---G-C-C-- 4932 |||||||||| |||||||||| |||||||||| ||||| |||| |||||||||| | | | CTCTTTGGTG GAAATTGAGT CTCTGAACCT TGCGACGACC TGCAGGACGG ACCGTCGCAG 180 G--------- ---TCACAGG TTGCGTAATC CCAGTCTGGG TCGGATTTCT GTTAAGTAAT 4884 | ||||||| |||||||||| |||||||||| |||||||||| ||| | GCACGACGGG CCATCACAGG TTGCGTAATC CCAGTCTGGG TCGGATTTCT -TTACACGTT 239 TTAAGGGGTG TTTTGGACTA TTCCAGCTTT ATTTATAAAG TTAGTGGGTT TATGTTAATA 4824 ||||||| | |||||||||| |||| |||| | |||||||| |||||||||| |||||||||| TTAAGGGACG TTTTGGACTA TTCCTACTTT AATTATAAAG TTAGTGGGTT TATGTTAATA 299 AGTCTAATTA CTTGGGTGTT AAAAGAGGTA ACCTTGAGTA AATTAGTGGG TTATTATTGC 4764 |||||||||| | |||| ||| |||||||||| |||||||||| |||||||||| |||||||| | AGTCTAATTA CCTGGGGGTT AAAAGAGGTA ACCTTGAGTA AATTAGTGGG TTATTATT-C 358 CATCTTTTAT TCTTAATTAT ATGCTAATTA GGGTAAAAGA AGGAGGGTTT GAATAAGAAA 4704 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATCTTTTAT TCTTAATTAT ATGCTAATTA GGGTAAAAGA AGGAGGGTTT GAATAAGAAA 418 AAGAAAAGAA CAGAAAGAGA GAGAAGGAGA ATCGAT 4668 |||||||||| |||||||||| |||||||||| |||||| AAGAAAAGAA CAGAAAGAGA GAGAAGGAGA ATCGAT 454 hqPGS_C06HBa0024L21.1-7-_SGN-E396070- (5104 4668) ******************************************************************************** EST sequence 21 -strand 558 n (File: SGN-E231589-) 1 AAATGTAACG ACCTGTTTAG TCGTTTTGAG TAGCAGATTT TATTTTTGGA AAAACAGGTT 61 GAGACGACGG AACCCACGAC GGACCGTCAT GAGCACGATG GACCGTCGAG GAGTCTCGTT 121 TCAAAACACT TAGAAATTCT GAAATTGGGT ACTAAAAATC GACTCTCTGA ACTTCGTAAC 181 GGAATGGCAC GACGGACCGT CACGGGCGTG ACGGACCGTC ACAGACTCTT TGGTGGAAAT 241 TGAGTCTATG AACCTTGCGA CGACCTGCAG GACGGACCGT CGCAGGCACG ACGGGCCATC 301 ACAGGTTGCG TAATCCCAGT CTGGGTCGGA TTTCTTTACA CGTTTTAAGG GACGTTTTGG 361 ACTATTCCTA CTTTAATTAT AAAGTTAGTG GGTTTATGTT AATAAGTCTA ATTACCTGGG 421 GGTTAAAAGA GGTAACCTTG AGTAAATTAG TGGGTTATTA TTCCATCTTT TATTCTTAAT 481 TATATGCTAA TTAGGGTAAA AGAAGGAGGG TTTGAATAAG AAAAAGAAAA GAACAGAAAG 541 AGAGAGAAGG AGAATCGA Predicted gene structure (within gDNA segment 6827 to 4069): Exon 1 5206 4669 ( 538 n); cDNA 4 558 ( 555 n); score: 0.863 MATCH C06HBa0024L21.1-7- SGN-E231589- 0.863 538 0.964 C PGS_C06HBa0024L21.1-7-_SGN-E231589- (5206 4669) Alignment (genomic DNA sequence = upper lines): TGTAACGACC TGTTTAGTCG TTTTGAGCAG CAGATTTTAT TTCTGGAAAA ACAGGCTGAG 5147 |||||||||| |||||||||| ||||||| || |||||||||| || ||||||| ||||| |||| TGTAACGACC TGTTTAGTCG TTTTGAGTAG CAGATTTTAT TTTTGGAAAA ACAGGTTGAG 63 ACGACGGAAC CTACGACGGA CCGTCATGAG TACGACGGAC CGTCGAGGGG TCTCGTTTCA 5087 |||||||||| | |||||||| |||||||||| |||| |||| |||||||| | |||||||||| ACGACGGAAC CCACGACGGA CCGTCATGAG CACGATGGAC CGTCGAGGAG TCTCGTTTCA 123 AAACACTTAG AAATTTTGAA ATTGGGTACT GAAAATCGAC TCTCTGAACT TCGTAACGGA 5027 |||||||||| ||||| |||| |||||||||| ||||||||| |||||||||| |||||||||| AAACACTTAG AAATTCTGAA ATTGGGTACT AAAAATCGAC TCTCTGAACT TCGTAACGGA 183 ATGGCAGGAC GGACCGTCAC GGGCGTGACG GACCGTCACA GACTCTTTGG TGGAAATTGA 4967 |||||| ||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGGCACGAC GGACCGTCAC GGGCGTGACG GACCGTCACA GACTCTTTGG TGGAAATTGA 243 GTCTCTGAAC CTT--G-CGA --T------- -GACC-T-GC A-G---GACG GGCCGTCACA 4926 |||| ||||| ||| | ||| | |||| | || | | |||| |||| ||||| GTCTATGAAC CTTGCGACGA CCTGCAGGAC GGACCGTCGC AGGCACGACG GGCCATCACA 303 GGTTGCGTAA TCCCAGTCTG GGTCGGATTT CTGTTAAGTA ATTTAAGGGG TGTTTTGGAC 4866 |||||||||| |||||||||| |||||||||| || ||| |||||||| ||||||||| GGTTGCGTAA TCCCAGTCTG GGTCGGATTT CT-TTACACG TTTTAAGGGA CGTTTTGGAC 362 TATTCCAGCT TTATTTATAA AGTTAGTGGG TTTATGTTAA TAAGTCTAAT TACTTGGGTG 4806 |||||| || ||| |||||| |||||||||| |||||||||| |||||||||| ||| |||| | TATTCCTACT TTAATTATAA AGTTAGTGGG TTTATGTTAA TAAGTCTAAT TACCTGGGGG 422 TTAAAAGAGG TAACCTTGAG TAAATTAGTG GGTTATTATT GCCATCTTTT ATTCTTAATT 4746 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| |||||||||| TTAAAAGAGG TAACCTTGAG TAAATTAGTG GGTTATTATT -CCATCTTTT ATTCTTAATT 481 ATATGCTAAT TAGGGTAAAA GAAGGAGGGT TTGAATAAGA AAAAGAAAAG AACAGAAAGA 4686 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATATGCTAAT TAGGGTAAAA GAAGGAGGGT TTGAATAAGA AAAAGAAAAG AACAGAAAGA 541 GAGAGAAGGA GAATCGA 4669 |||||||||| ||||||| GAGAGAAGGA GAATCGA 558 hqPGS_C06HBa0024L21.1-7-_SGN-E231589- (5206 4669) ******************************************************************************** EST sequence 32 -strand 649 n (File: SGN-E374999-) 1 ATTTTTTCAT TAATTCAGGG TGAAGAAAAT CTTTGTTTCT AATAGTGTTA TAAATCGTAA 61 AATAATAATA ATATTTAAGT AGGAAGAACA TAAATGTAAC GACCTGTTTA GTCGTTTGGA 121 GTAGCAGATT TTATTTTTGG AAAAACAGGT TGAGACGACG GAACCCACGA CGGACCGTCA 181 TGAGCACGAT GGACCGTCGA GGAGTCTCGT TTCAAAACAC TTAGAAATTC TGAAATTGGG 241 TACTAAAAAT CGACTCTCTG AACTTCGTAA CGGAATGGCA CGACGGACCG TCACGGGCGT 301 GACGGACCGT CACAGACTCT TTGGTGGAAA TTGAGTCTCT GAACCTTGCG ACGACCTGCA 361 GGACGGACCG TCGCAGGCAC GACGGGCCAT CACAGGTTGC GTAATCCCAG TCTGGGTCGG 421 ATTTCTTTAC ACGTTTTAAG GGACGTTTTG GACTATTCCT ACTTTAATTA TAAAGTTAGT 481 GGGTTTATGT TAATAAGTCT AATTACCTGG GGGTTAAAAG AGGTAACCTT GAGTAAATTA 541 GTGGGTTATT ATTCCATCTT TTATTCTTAA TTATATGCTA ATTAGGGTAA AAGAAGGAGG 601 GTTTGAATAA GAAAAAGAAA AGAACAGAAA GAGAGAGAAG GAGAATCGA Predicted gene structure (within gDNA segment 7737 to 4069): Exon 1 5206 4669 ( 538 n); cDNA 95 649 ( 555 n); score: 0.863 MATCH C06HBa0024L21.1-7- SGN-E374999- 0.863 538 0.829 C PGS_C06HBa0024L21.1-7-_SGN-E374999- (5206 4669) Alignment (genomic DNA sequence = upper lines): TGTAACGACC TGTTTAGTCG TTTTGAGCAG CAGATTTTAT TTCTGGAAAA ACAGGCTGAG 5147 |||||||||| |||||||||| ||| ||| || |||||||||| || ||||||| ||||| |||| TGTAACGACC TGTTTAGTCG TTTGGAGTAG CAGATTTTAT TTTTGGAAAA ACAGGTTGAG 154 ACGACGGAAC CTACGACGGA CCGTCATGAG TACGACGGAC CGTCGAGGGG TCTCGTTTCA 5087 |||||||||| | |||||||| |||||||||| |||| |||| |||||||| | |||||||||| ACGACGGAAC CCACGACGGA CCGTCATGAG CACGATGGAC CGTCGAGGAG TCTCGTTTCA 214 AAACACTTAG AAATTTTGAA ATTGGGTACT GAAAATCGAC TCTCTGAACT TCGTAACGGA 5027 |||||||||| ||||| |||| |||||||||| ||||||||| |||||||||| |||||||||| AAACACTTAG AAATTCTGAA ATTGGGTACT AAAAATCGAC TCTCTGAACT TCGTAACGGA 274 ATGGCAGGAC GGACCGTCAC GGGCGTGACG GACCGTCACA GACTCTTTGG TGGAAATTGA 4967 |||||| ||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGGCACGAC GGACCGTCAC GGGCGTGACG GACCGTCACA GACTCTTTGG TGGAAATTGA 334 GTCTCTGAAC CTT--G-CGA --T------- -GACC-T-GC A-G---GACG GGCCGTCACA 4926 |||||||||| ||| | ||| | |||| | || | | |||| |||| ||||| GTCTCTGAAC CTTGCGACGA CCTGCAGGAC GGACCGTCGC AGGCACGACG GGCCATCACA 394 GGTTGCGTAA TCCCAGTCTG GGTCGGATTT CTGTTAAGTA ATTTAAGGGG TGTTTTGGAC 4866 |||||||||| |||||||||| |||||||||| || ||| |||||||| ||||||||| GGTTGCGTAA TCCCAGTCTG GGTCGGATTT CT-TTACACG TTTTAAGGGA CGTTTTGGAC 453 TATTCCAGCT TTATTTATAA AGTTAGTGGG TTTATGTTAA TAAGTCTAAT TACTTGGGTG 4806 |||||| || ||| |||||| |||||||||| |||||||||| |||||||||| ||| |||| | TATTCCTACT TTAATTATAA AGTTAGTGGG TTTATGTTAA TAAGTCTAAT TACCTGGGGG 513 TTAAAAGAGG TAACCTTGAG TAAATTAGTG GGTTATTATT GCCATCTTTT ATTCTTAATT 4746 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| |||||||||| TTAAAAGAGG TAACCTTGAG TAAATTAGTG GGTTATTATT -CCATCTTTT ATTCTTAATT 572 ATATGCTAAT TAGGGTAAAA GAAGGAGGGT TTGAATAAGA AAAAGAAAAG AACAGAAAGA 4686 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATATGCTAAT TAGGGTAAAA GAAGGAGGGT TTGAATAAGA AAAAGAAAAG AACAGAAAGA 632 GAGAGAAGGA GAATCGA 4669 |||||||||| ||||||| GAGAGAAGGA GAATCGA 649 hqPGS_C06HBa0024L21.1-7-_SGN-E374999- (5206 4669) ******************************************************************************** EST sequence 45 -strand 690 n (File: SGN-E377133-) 1 CTCAATGAAA AATGAGTAAA TTTTTTATAT TTTATGGCAT AATTTTTTCA TTAATTCATG 61 GTTGAGAAAA TCTTTGTTTC TAATAGTGTT ATAAATCGTA AAATAATAAT AATATTTAAG 121 TAGGAAGAAC ATAAATGTAA CGACCTGTTT AGTCGTTTTG AGTAGCAGAT TTTATTTTTG 181 GAAAAACAGG TTGAGACGAC GGAACCCACG ACGGACCGTC ATGAGCACGA TGGACCGTCG 241 AGGAGTCTCG TTTCAAAACA CTTAGAAATT CTGAAATTGG GTACTAAAAA TCGACTCTCT 301 GAACTTCGTA ACGGAATGGC ACGACGGACC GTCACGGGCG TGACGGACCG TCACAGACTC 361 TTTGGTGGAA ATTGAGTCTC TGAACCTTGC GACGACCTGC AGGACGGACC GTCGCAGGCA 421 CGACGGGCCA TCACAGGTTG CGTAATCCCA GTCTGGGTCG GATTTCTTTA CACGTTTTAA 481 GGGACGTTTT GGACTATTCC TACTTTAATT ATAAAGTTAG TGGGTTTATG TTAATAAGTC 541 TAATTACCTG GGGGTTAAAA GAGGTAACCT TGAGTAAATT AGTGGGTTAT TATTCCATCT 601 TTTATTCTTA ATTATATGCT AATTAGGGTA AAAGAAGGAG GGTTTGAATA AGAAAAAGAA 661 AAGAACAGAA AGAGAGAGAA GGAGAATCGA Predicted gene structure (within gDNA segment 8147 to 4069): Exon 1 5206 4669 ( 538 n); cDNA 136 690 ( 555 n); score: 0.865 MATCH C06HBa0024L21.1-7- SGN-E377133- 0.865 538 0.780 C PGS_C06HBa0024L21.1-7-_SGN-E377133- (5206 4669) Alignment (genomic DNA sequence = upper lines): TGTAACGACC TGTTTAGTCG TTTTGAGCAG CAGATTTTAT TTCTGGAAAA ACAGGCTGAG 5147 |||||||||| |||||||||| ||||||| || |||||||||| || ||||||| ||||| |||| TGTAACGACC TGTTTAGTCG TTTTGAGTAG CAGATTTTAT TTTTGGAAAA ACAGGTTGAG 195 ACGACGGAAC CTACGACGGA CCGTCATGAG TACGACGGAC CGTCGAGGGG TCTCGTTTCA 5087 |||||||||| | |||||||| |||||||||| |||| |||| |||||||| | |||||||||| ACGACGGAAC CCACGACGGA CCGTCATGAG CACGATGGAC CGTCGAGGAG TCTCGTTTCA 255 AAACACTTAG AAATTTTGAA ATTGGGTACT GAAAATCGAC TCTCTGAACT TCGTAACGGA 5027 |||||||||| ||||| |||| |||||||||| ||||||||| |||||||||| |||||||||| AAACACTTAG AAATTCTGAA ATTGGGTACT AAAAATCGAC TCTCTGAACT TCGTAACGGA 315 ATGGCAGGAC GGACCGTCAC GGGCGTGACG GACCGTCACA GACTCTTTGG TGGAAATTGA 4967 |||||| ||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGGCACGAC GGACCGTCAC GGGCGTGACG GACCGTCACA GACTCTTTGG TGGAAATTGA 375 GTCTCTGAAC CTT--G-CGA --T------- -GACC-T-GC A-G---GACG GGCCGTCACA 4926 |||||||||| ||| | ||| | |||| | || | | |||| |||| ||||| GTCTCTGAAC CTTGCGACGA CCTGCAGGAC GGACCGTCGC AGGCACGACG GGCCATCACA 435 GGTTGCGTAA TCCCAGTCTG GGTCGGATTT CTGTTAAGTA ATTTAAGGGG TGTTTTGGAC 4866 |||||||||| |||||||||| |||||||||| || ||| |||||||| ||||||||| GGTTGCGTAA TCCCAGTCTG GGTCGGATTT CT-TTACACG TTTTAAGGGA CGTTTTGGAC 494 TATTCCAGCT TTATTTATAA AGTTAGTGGG TTTATGTTAA TAAGTCTAAT TACTTGGGTG 4806 |||||| || ||| |||||| |||||||||| |||||||||| |||||||||| ||| |||| | TATTCCTACT TTAATTATAA AGTTAGTGGG TTTATGTTAA TAAGTCTAAT TACCTGGGGG 554 TTAAAAGAGG TAACCTTGAG TAAATTAGTG GGTTATTATT GCCATCTTTT ATTCTTAATT 4746 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| |||||||||| TTAAAAGAGG TAACCTTGAG TAAATTAGTG GGTTATTATT -CCATCTTTT ATTCTTAATT 613 ATATGCTAAT TAGGGTAAAA GAAGGAGGGT TTGAATAAGA AAAAGAAAAG AACAGAAAGA 4686 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATATGCTAAT TAGGGTAAAA GAAGGAGGGT TTGAATAAGA AAAAGAAAAG AACAGAAAGA 673 GAGAGAAGGA GAATCGA 4669 |||||||||| ||||||| GAGAGAAGGA GAATCGA 690 hqPGS_C06HBa0024L21.1-7-_SGN-E377133- (5206 4669) ******************************************************************************** EST sequence 57 -strand 545 n (File: SGN-E241959-) 1 TGTTTAGTCG TTTTGAGTAG CAGATTTTAT TTTTGGAAAA ACAGGTTGAG ACGACGGAAC 61 CCACGACGGA CCGTCATGAG CACGATGGAC CGTCGAGGAG TCTCGTTTCA AAACACTTAG 121 AAATTCTGAA ATTGGGTACT AAAAATCGAC TCTCTGAACT TCGTAACGGA ATGGCACGAC 181 GGACCGTCAC GGGCGTGACG GACCGTCACA GACTCTTTGG TGGAAATTGA GTCTCTGAAC 241 CTTGCGACGA CCTGCAGGAC GGACCGTCGC AGGCACGACG GGCCATCACA GGTTGCGTAA 301 TCCCAGTCTG GGTCGGATTT CTTTACACGT TTTAAGGGAC GTTTTGGACT ATTCCTACTT 361 TAATTATAAA GTTAGTGGGT TTATGTTAAT AAGTCTAATT ACCTGGGGGT TAAAAGAGGT 421 AACCTTGAGT AAATTAGTGG GTTATTATTC CATCTTTTAT TCTTAATTAT ATGCTAATTA 481 GGGTAAAAGA AGGAGGGTTT GAATAAGAAA AAGAAAAGAA CAGAAAGAGA GAGAAGGAGA 541 ATCGA Predicted gene structure (within gDNA segment 6697 to 4069): Exon 1 5196 4669 ( 528 n); cDNA 1 545 ( 545 n); score: 0.863 MATCH C06HBa0024L21.1-7- SGN-E241959- 0.863 528 0.969 C PGS_C06HBa0024L21.1-7-_SGN-E241959- (5196 4669) Alignment (genomic DNA sequence = upper lines): TGTTTAGTCG TTTTGAGCAG CAGATTTTAT TTCTGGAAAA ACAGGCTGAG ACGACGGAAC 5137 |||||||||| ||||||| || |||||||||| || ||||||| ||||| |||| |||||||||| TGTTTAGTCG TTTTGAGTAG CAGATTTTAT TTTTGGAAAA ACAGGTTGAG ACGACGGAAC 60 CTACGACGGA CCGTCATGAG TACGACGGAC CGTCGAGGGG TCTCGTTTCA AAACACTTAG 5077 | |||||||| |||||||||| |||| |||| |||||||| | |||||||||| |||||||||| CCACGACGGA CCGTCATGAG CACGATGGAC CGTCGAGGAG TCTCGTTTCA AAACACTTAG 120 AAATTTTGAA ATTGGGTACT GAAAATCGAC TCTCTGAACT TCGTAACGGA ATGGCAGGAC 5017 ||||| |||| |||||||||| ||||||||| |||||||||| |||||||||| |||||| ||| AAATTCTGAA ATTGGGTACT AAAAATCGAC TCTCTGAACT TCGTAACGGA ATGGCACGAC 180 GGACCGTCAC GGGCGTGACG GACCGTCACA GACTCTTTGG TGGAAATTGA GTCTCTGAAC 4957 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGACCGTCAC GGGCGTGACG GACCGTCACA GACTCTTTGG TGGAAATTGA GTCTCTGAAC 240 CTT--G-CGA --T------- -GACC-T-GC A-G---GACG GGCCGTCACA GGTTGCGTAA 4916 ||| | ||| | |||| | || | | |||| |||| ||||| |||||||||| CTTGCGACGA CCTGCAGGAC GGACCGTCGC AGGCACGACG GGCCATCACA GGTTGCGTAA 300 TCCCAGTCTG GGTCGGATTT CTGTTAAGTA ATTTAAGGGG TGTTTTGGAC TATTCCAGCT 4856 |||||||||| |||||||||| || ||| |||||||| ||||||||| |||||| || TCCCAGTCTG GGTCGGATTT CT-TTACACG TTTTAAGGGA CGTTTTGGAC TATTCCTACT 359 TTATTTATAA AGTTAGTGGG TTTATGTTAA TAAGTCTAAT TACTTGGGTG TTAAAAGAGG 4796 ||| |||||| |||||||||| |||||||||| |||||||||| ||| |||| | |||||||||| TTAATTATAA AGTTAGTGGG TTTATGTTAA TAAGTCTAAT TACCTGGGGG TTAAAAGAGG 419 TAACCTTGAG TAAATTAGTG GGTTATTATT GCCATCTTTT ATTCTTAATT ATATGCTAAT 4736 |||||||||| |||||||||| |||||||||| ||||||||| |||||||||| |||||||||| TAACCTTGAG TAAATTAGTG GGTTATTATT -CCATCTTTT ATTCTTAATT ATATGCTAAT 478 TAGGGTAAAA GAAGGAGGGT TTGAATAAGA AAAAGAAAAG AACAGAAAGA GAGAGAAGGA 4676 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAGGGTAAAA GAAGGAGGGT TTGAATAAGA AAAAGAAAAG AACAGAAAGA GAGAGAAGGA 538 GAATCGA 4669 ||||||| GAATCGA 545 hqPGS_C06HBa0024L21.1-7-_SGN-E241959- (5196 4669) ******************************************************************************** EST sequence 42 -strand 472 n (File: SGN-E236652-) 1 TCATGAGCAC GATGGACCGT CGAGGAGTCT CGTTTCAAAA CACTTAGAAA TTCTGAAATT 61 GGGTACTAAA AATCGACTCT CTGAACTTCG TAACGGAATG GCACGACGGA CCGTCACGGG 121 CGTGACGGAC CGTCACAGAC TCTTTGGTGG AAATTGAGTC TCTGAACCTT GCGACGACCT 181 GCAGGACGGA CCGTCGCAGG CACGACGGGC CATCACAGGT TGCGTAATCC CAGTCTGGGT 241 CGGATTTCTT TACACGTTTT AAGGGACGTT TTGGACTATT CCTACTTTAA TTATAAAGTT 301 AGTGGGTTTA TGTTAATAAG TCTAATTACC TGGGGGTTAA AAGAGGTAAC CTTGAGTAAA 361 TTAGTGGGTT ATTATTCCAT CTTTTATTCT TAATTATATG CTAATTAGGG TAAAAGAAGG 421 AGGGTTTGAA TAAGAAAAAG AAAAGAACAG AAAGAGAGAG AAGGAGAATC GA Predicted gene structure (within gDNA segment 5967 to 4069): Exon 1 5123 4669 ( 455 n); cDNA 1 472 ( 472 n); score: 0.849 MATCH C06HBa0024L21.1-7- SGN-E236652- 0.849 455 0.964 C PGS_C06HBa0024L21.1-7-_SGN-E236652- (5123 4669) Alignment (genomic DNA sequence = upper lines): TCATGAGTAC GACGGACCGT CGAGGGGTCT CGTTTCAAAA CACTTAGAAA TTTTGAAATT 5064 ||||||| || || ||||||| ||||| |||| |||||||||| |||||||||| || ||||||| TCATGAGCAC GATGGACCGT CGAGGAGTCT CGTTTCAAAA CACTTAGAAA TTCTGAAATT 60 GGGTACTGAA AATCGACTCT CTGAACTTCG TAACGGAATG GCAGGACGGA CCGTCACGGG 5004 ||||||| || |||||||||| |||||||||| |||||||||| ||| |||||| |||||||||| GGGTACTAAA AATCGACTCT CTGAACTTCG TAACGGAATG GCACGACGGA CCGTCACGGG 120 CGTGACGGAC CGTCACAGAC TCTTTGGTGG AAATTGAGTC TCTGAACCTT GCGATGACCT 4944 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||| ||||| CGTGACGGAC CGTCACAGAC TCTTTGGTGG AAATTGAGTC TCTGAACCTT GCGACGACCT 180 GC---A-GGA ----CG--GG --C--C--G- --TCACAGGT TGCGTAATCC CAGTCTGGGT 4903 || | ||| || || | | | |||||||| |||||||||| |||||||||| GCAGGACGGA CCGTCGCAGG CACGACGGGC CATCACAGGT TGCGTAATCC CAGTCTGGGT 240 CGGATTTCTG TTAAGTAATT TAAGGGGTGT TTTGGACTAT TCCAGCTTTA TTTATAAAGT 4843 ||||||||| ||| || |||||| || |||||||||| ||| ||||| ||||||||| CGGATTTCT- TTACACGTTT TAAGGGACGT TTTGGACTAT TCCTACTTTA ATTATAAAGT 299 TAGTGGGTTT ATGTTAATAA GTCTAATTAC TTGGGTGTTA AAAGAGGTAA CCTTGAGTAA 4783 |||||||||| |||||||||| |||||||||| |||| |||| |||||||||| |||||||||| TAGTGGGTTT ATGTTAATAA GTCTAATTAC CTGGGGGTTA AAAGAGGTAA CCTTGAGTAA 359 ATTAGTGGGT TATTATTGCC ATCTTTTATT CTTAATTATA TGCTAATTAG GGTAAAAGAA 4723 |||||||||| ||||||| || |||||||||| |||||||||| |||||||||| |||||||||| ATTAGTGGGT TATTATT-CC ATCTTTTATT CTTAATTATA TGCTAATTAG GGTAAAAGAA 418 GGAGGGTTTG AATAAGAAAA AGAAAAGAAC AGAAAGAGAG AGAAGGAGAA TCGA 4669 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||| GGAGGGTTTG AATAAGAAAA AGAAAAGAAC AGAAAGAGAG AGAAGGAGAA TCGA 472 hqPGS_C06HBa0024L21.1-7-_SGN-E236652- (5123 4669) ******************************************************************************** EST sequence 83 +strand 674 n (File: SGN-E396057+) 1 TTTTTTTTTT ATGAATTAGC TCAATGAAAA ATGAGTAAAT TTTTTATATT TTATGGCATA 61 ATTTTTTCAT TAATTCATGG TTGAGAAAAT CTTTGTTTCT AATAGTGTTA TAAATCGTAA 121 AATAATAATA ATATTTAAGT AGGAAGAACA TAAATGTAAC GACCTGTTTA GTCGTTTTGA 181 GTAGCAGATT TTATTTTTGG AAAAACAGGT TGAGACGACG GAACCCACGA CGGACCGTCA 241 TGAGCACGAT GGACCGTCGA GGAGTCTCGT TTCAAAACAC TTAAAAATTC TGAAATTGGG 301 TACTAAAAAT CGACTCTCTG AACTTCGTAA CGGAATGGCA CGACGGACCG TCACGGGCGT 361 GACGGACCGT CACAGACTCT TTGGTGGAAA TTGAGTCTCT GAACCTTGCG ACGACCTGCA 421 GGACGGACCG TCGCAGGCAC GACGGGCCAT CACAGGTTGC GTAATCCCAG TCTGGGTCGG 481 ATTTCTTTAC ACGTTTTAAG GGACGTTTTG GACTATTCCT ACTTTAATTA TAAAGTTAGT 541 GGGTTTATGT TAATAAGTCT AATTACCTGG GGGTTAAAAG AGGTAACCTT GAGTAAATTA 601 GTGGGTTATT ATTCCATCTT TTATTCTTAA TTATATGCTA ATTAGGGTAA AAAAAAGAAG 661 GTTTGAATAA AAAA Predicted gene structure (within gDNA segment 9305 to 3896): Exon 1 5206 4704 ( 503 n); cDNA 155 674 ( 520 n); score: 0.846 PPA cDNA 12 1 MATCH C06HBa0024L21.1-7- SGN-E396057+ 0.846 503 0.746 C PGS_C06HBa0024L21.1-7-_SGN-E396057+ (5206 4704) Alignment (genomic DNA sequence = upper lines): TGTAACGACC TGTTTAGTCG TTTTGAGCAG CAGATTTTAT TTCTGGAAAA ACAGGCTGAG 5147 |||||||||| |||||||||| ||||||| || |||||||||| || ||||||| ||||| |||| TGTAACGACC TGTTTAGTCG TTTTGAGTAG CAGATTTTAT TTTTGGAAAA ACAGGTTGAG 214 ACGACGGAAC CTACGACGGA CCGTCATGAG TACGACGGAC CGTCGAGGGG TCTCGTTTCA 5087 |||||||||| | |||||||| |||||||||| |||| |||| |||||||| | |||||||||| ACGACGGAAC CCACGACGGA CCGTCATGAG CACGATGGAC CGTCGAGGAG TCTCGTTTCA 274 AAACACTTAG AAATTTTGAA ATTGGGTACT GAAAATCGAC TCTCTGAACT TCGTAACGGA 5027 ||||||||| ||||| |||| |||||||||| ||||||||| |||||||||| |||||||||| AAACACTTAA AAATTCTGAA ATTGGGTACT AAAAATCGAC TCTCTGAACT TCGTAACGGA 334 ATGGCAGGAC GGACCGTCAC GGGCGTGACG GACCGTCACA GACTCTTTGG TGGAAATTGA 4967 |||||| ||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGGCACGAC GGACCGTCAC GGGCGTGACG GACCGTCACA GACTCTTTGG TGGAAATTGA 394 GTCTCTGAAC CTT--G-CGA --T------- -GACC-T-GC A-G---GACG GGCCGTCACA 4926 |||||||||| ||| | ||| | |||| | || | | |||| |||| ||||| GTCTCTGAAC CTTGCGACGA CCTGCAGGAC GGACCGTCGC AGGCACGACG GGCCATCACA 454 GGTTGCGTAA TCCCAGTCTG GGTCGGATTT CTGTTAAGTA ATTTAAGGGG TGTTTTGGAC 4866 |||||||||| |||||||||| |||||||||| || ||| |||||||| ||||||||| GGTTGCGTAA TCCCAGTCTG GGTCGGATTT CT-TTACACG TTTTAAGGGA CGTTTTGGAC 513 TATTCCAGCT TTATTTATAA AGTTAGTGGG TTTATGTTAA TAAGTCTAAT TACTTGGGTG 4806 |||||| || ||| |||||| |||||||||| |||||||||| |||||||||| ||| |||| | TATTCCTACT TTAATTATAA AGTTAGTGGG TTTATGTTAA TAAGTCTAAT TACCTGGGGG 573 TTAAAAGAGG TAACCTTGAG TAAATTAGTG GGTTATTATT GCCATCTTTT ATTCTTAATT 4746 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| |||||||||| TTAAAAGAGG TAACCTTGAG TAAATTAGTG GGTTATTATT -CCATCTTTT ATTCTTAATT 632 ATATGCTAAT TAGGGTAAAA GAAGGAGGGT TTGAATAAGA AA 4704 |||||||||| |||||||||| || || ||| |||||||| | || ATATGCTAAT TAGGGTAAAA AAAAGAAGGT TTGAATAAAA AA 674 hqPGS_C06HBa0024L21.1-7-_SGN-E396057+ (5206 4704) ******************************************************************************** EST sequence 94 +strand 658 n (File: SGN-E377132+) 1 TTTTTTTTTA TGAATTAGCT CAATGAAAAA TGAGTAAATT TTTTATATTT TATGGCATAA 61 TTTTTTCATT AATTCATGGT TGAGAAAATC TTTGTTTCTA ATAGTGTTAT AAATCGTAAA 121 ATAATAATAA TATTTAAGTA GGAAGAACAT AAATGTAACG ACCTGTTTAG TCGTTTTGAG 181 TAGCAGATTT TATTTTTGGA AAAACAGGTT GAGACGACGG AACCCACGAC GGACCGTCAT 241 GAGCACGATG GACCGTCGAG GAGTCTCGTT TCAAAACACT TAGAAATTCT GAAATTGGGT 301 ACTAAAAATC GACTCTCTGA ACTTCGTAAC GGAATGGCAC GACGGACCGT CACGGGCGTG 361 ACGGACCGTC ACAGACTCTT TGGTGGAAAT TGAGTCTCTG AACCTTGCGA CGACCTGCAG 421 GACGGACCGT CGCAGGCACG ACGGGCCATC ACAGGTTGCG TAATCCCAGT CTGGGTCGGA 481 TTTCTTTACA CGTTTTAAGG GACGTTTTGG ACTATTCCTA CTTTAATTAT AAAGTTAGTG 541 GGTTTATGTT AATAAGTCTA ATTACCTGGG GGTTAAAAGA GGTAACCTTG AGTAAATTAG 601 TGGGTTATTA TTCCATCTTT TATTCTTAAA TATATGCTAA TTAGGGTAAA AGAAGGAA Predicted gene structure (within gDNA segment 8317 to 4100): Exon 1 5206 4720 ( 487 n); cDNA 154 657 ( 504 n); score: 0.849 PPA cDNA 11 1 MATCH C06HBa0024L21.1-7- SGN-E377132+ 0.849 487 0.740 C PGS_C06HBa0024L21.1-7-_SGN-E377132+ (5206 4720) Alignment (genomic DNA sequence = upper lines): TGTAACGACC TGTTTAGTCG TTTTGAGCAG CAGATTTTAT TTCTGGAAAA ACAGGCTGAG 5147 |||||||||| |||||||||| ||||||| || |||||||||| || ||||||| ||||| |||| TGTAACGACC TGTTTAGTCG TTTTGAGTAG CAGATTTTAT TTTTGGAAAA ACAGGTTGAG 213 ACGACGGAAC CTACGACGGA CCGTCATGAG TACGACGGAC CGTCGAGGGG TCTCGTTTCA 5087 |||||||||| | |||||||| |||||||||| |||| |||| |||||||| | |||||||||| ACGACGGAAC CCACGACGGA CCGTCATGAG CACGATGGAC CGTCGAGGAG TCTCGTTTCA 273 AAACACTTAG AAATTTTGAA ATTGGGTACT GAAAATCGAC TCTCTGAACT TCGTAACGGA 5027 |||||||||| ||||| |||| |||||||||| ||||||||| |||||||||| |||||||||| AAACACTTAG AAATTCTGAA ATTGGGTACT AAAAATCGAC TCTCTGAACT TCGTAACGGA 333 ATGGCAGGAC GGACCGTCAC GGGCGTGACG GACCGTCACA GACTCTTTGG TGGAAATTGA 4967 |||||| ||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGGCACGAC GGACCGTCAC GGGCGTGACG GACCGTCACA GACTCTTTGG TGGAAATTGA 393 GTCTCTGAAC CTT--G-CGA --T------- -GACC-T-GC A-G---GACG GGCCGTCACA 4926 |||||||||| ||| | ||| | |||| | || | | |||| |||| ||||| GTCTCTGAAC CTTGCGACGA CCTGCAGGAC GGACCGTCGC AGGCACGACG GGCCATCACA 453 GGTTGCGTAA TCCCAGTCTG GGTCGGATTT CTGTTAAGTA ATTTAAGGGG TGTTTTGGAC 4866 |||||||||| |||||||||| |||||||||| || ||| |||||||| ||||||||| GGTTGCGTAA TCCCAGTCTG GGTCGGATTT CT-TTACACG TTTTAAGGGA CGTTTTGGAC 512 TATTCCAGCT TTATTTATAA AGTTAGTGGG TTTATGTTAA TAAGTCTAAT TACTTGGGTG 4806 |||||| || ||| |||||| |||||||||| |||||||||| |||||||||| ||| |||| | TATTCCTACT TTAATTATAA AGTTAGTGGG TTTATGTTAA TAAGTCTAAT TACCTGGGGG 572 TTAAAAGAGG TAACCTTGAG TAAATTAGTG GGTTATTATT GCCATCTTTT ATTCTTAATT 4746 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| |||||||| | TTAAAAGAGG TAACCTTGAG TAAATTAGTG GGTTATTATT -CCATCTTTT ATTCTTAAAT 631 ATATGCTAAT TAGGGTAAAA GAAGGA 4720 |||||||||| |||||||||| |||||| ATATGCTAAT TAGGGTAAAA GAAGGA 657 hqPGS_C06HBa0024L21.1-7-_SGN-E377132+ (5206 4720) ******************************************************************************** EST sequence 82 +strand 647 n (File: SGN-E396055+) 1 TTTTTTTTTT ATGAATTAGC TCAATGAAAA ATGAGTAAAT TTTTTATATT TTATGGCATA 61 ATTTTTTCAT TAATTCATGG TTGAGAAAAT CTTTGTTTCT AATAGTGTTA TAAATCGTAA 121 AATAATAATA ATATTTAAGT AGGAAGAACA TAAATGTAAC GACCTGTTTA GTCGTTTTGA 181 GTAGCAGATT TTATTTTTGG AAAAACAGGT TGAGACGACG GAACCCACGA CGGACCGTCA 241 TGAGCACGAT GGACCGTCGA GGAGTCTCGT TTCAAAACAC TTAGAAATTC TGAAATTGGG 301 TACTAAAAAT CGACTCTCTG AACTTCGTAA CGGAATGGCA CGACGGACCG TCACGGGCGT 361 GACGGACCGT CACAGACTCT TTGGTGGAAA TTGAGTCTCT GAACCTTGCG ACGACCTGCA 421 GGACGGACCG TCGCAGGCAC GACGGGCCAT CACAGGTTGC GTAATCCCAG TCTGGGTCGG 481 ATTTCTTTAC ACGTTTTAAG GGACGTTTTG GACTATTCCT ACTTTAATTA TAAAGTTAGT 541 GGGGTTTATG TTAATAAGTC TAATTACCCT GGGGGTTAAA AAAAGGAACC CTTGAGTAAA 601 TTAGTGGGTT ATTATTTCCA TCTTTTTATT CTTAATTATA TGCTAAT Predicted gene structure (within gDNA segment 8327 to 4126): Exon 1 5206 4736 ( 471 n); cDNA 155 647 ( 493 n); score: 0.818 PPA cDNA 12 1 MATCH C06HBa0024L21.1-7- SGN-E396055+ 0.818 471 0.728 C PGS_C06HBa0024L21.1-7-_SGN-E396055+ (5206 4736) Alignment (genomic DNA sequence = upper lines): TGTAACGACC TGTTTAGTCG TTTTGAGCAG CAGATTTTAT TTCTGGAAAA ACAGGCTGAG 5147 |||||||||| |||||||||| ||||||| || |||||||||| || ||||||| ||||| |||| TGTAACGACC TGTTTAGTCG TTTTGAGTAG CAGATTTTAT TTTTGGAAAA ACAGGTTGAG 214 ACGACGGAAC CTACGACGGA CCGTCATGAG TACGACGGAC CGTCGAGGGG TCTCGTTTCA 5087 |||||||||| | |||||||| |||||||||| |||| |||| |||||||| | |||||||||| ACGACGGAAC CCACGACGGA CCGTCATGAG CACGATGGAC CGTCGAGGAG TCTCGTTTCA 274 AAACACTTAG AAATTTTGAA ATTGGGTACT GAAAATCGAC TCTCTGAACT TCGTAACGGA 5027 |||||||||| ||||| |||| |||||||||| ||||||||| |||||||||| |||||||||| AAACACTTAG AAATTCTGAA ATTGGGTACT AAAAATCGAC TCTCTGAACT TCGTAACGGA 334 ATGGCAGGAC GGACCGTCAC GGGCGTGACG GACCGTCACA GACTCTTTGG TGGAAATTGA 4967 |||||| ||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGGCACGAC GGACCGTCAC GGGCGTGACG GACCGTCACA GACTCTTTGG TGGAAATTGA 394 GTCTCTGAAC CTT--G-CGA --T------- -GACC-T-GC A-G---GACG GGCCGTCACA 4926 |||||||||| ||| | ||| | |||| | || | | |||| |||| ||||| GTCTCTGAAC CTTGCGACGA CCTGCAGGAC GGACCGTCGC AGGCACGACG GGCCATCACA 454 GGTTGCGTAA TCCCAGTCTG GGTCGGATTT CTGTTAAGTA ATTTAAGGGG TGTTTTGGAC 4866 |||||||||| |||||||||| |||||||||| || ||| |||||||| ||||||||| GGTTGCGTAA TCCCAGTCTG GGTCGGATTT CT-TTACACG TTTTAAGGGA CGTTTTGGAC 513 TATTCCAGCT TTATTTATAA AGTTAGT-GG GTTTATGTTA ATAAGTCTAA TTAC-TTGGG 4808 |||||| || ||| |||||| ||||||| || |||||||||| |||||||||| |||| |||| TATTCCTACT TTAATTATAA AGTTAGTGGG GTTTATGTTA ATAAGTCTAA TTACCCTGGG 573 TGTT-AAAAG AGGTAACCTT GAGTAAATTA GTGGGTTATT ATTGCCATC- TTTTATTCTT 4750 ||| |||| ||| | |||| |||||||||| |||||||||| ||| ||||| |||||||||| GGTTAAAAAA AGGAACCCTT GAGTAAATTA GTGGGTTATT ATTTCCATCT TTTTATTCTT 633 AATTATATGC TAAT 4736 |||||||||| |||| AATTATATGC TAAT 647 hqPGS_C06HBa0024L21.1-7-_SGN-E396055+ (5206 4736) ******************************************************************************** EST sequence 81 +strand 640 n (File: SGN-E398551+) 1 TTTTTTTTTT ATGAATTAGC TCAATGAAAA ATGAGTAAAT TTTTTATATT TTATGGCATA 61 ATTTTTTCAT TAATTCATGG TTGAGAAAAT CTTTGTTTCT AATAGTGTTA TAAATCGTAA 121 AATAATAATA ATATTTAAGT AGGAAGAACA TAAATGTAAC GACCTGTTTA GTCGTTTTGA 181 GTAGCAGATT TTATTTTTGG AAAAACAGGT TGAGACGACG GAACCCACGA CGGACCGTCA 241 TGAGCACGAT GGACCGTCGA GGAGTCTCGT TTCAAAACAC TTAGAAATTC TGAAATTGGG 301 TACTAAAAAT CGACTCTCTG AACTTCGTAA CGGAATGGCA CGACGGACCG TCACGGGCGT 361 GACGGACCGT CACAGACTCT TTGGTGGAAA TTGAGTCTCT GAACCTTGCG ACGACCTGCA 421 GGACGGACCG TCGCAGGCAC GACGGGCCAT CACAGGTTGC GTAATCCCAG TCTGGGTCGG 481 ATTTCTTTAC ACGTTTTAAG GGACGTTTTG GACTATTCCT ACTTTAATTA TAAAGTTAGT 541 GGGTTTATGT TAATAAGTCT AATTACCTGG GGGTTAAAAG AGGTAACCTT GAGTAAATTA 601 TTGGGTTATT ATTCCATCTT TTATTCTTAA TTATATGCTA Predicted gene structure (within gDNA segment 8327 to 4128): Exon 1 5206 4738 ( 469 n); cDNA 155 640 ( 486 n); score: 0.843 PPA cDNA 12 1 MATCH C06HBa0024L21.1-7- SGN-E398551+ 0.843 469 0.733 C PGS_C06HBa0024L21.1-7-_SGN-E398551+ (5206 4738) Alignment (genomic DNA sequence = upper lines): TGTAACGACC TGTTTAGTCG TTTTGAGCAG CAGATTTTAT TTCTGGAAAA ACAGGCTGAG 5147 |||||||||| |||||||||| ||||||| || |||||||||| || ||||||| ||||| |||| TGTAACGACC TGTTTAGTCG TTTTGAGTAG CAGATTTTAT TTTTGGAAAA ACAGGTTGAG 214 ACGACGGAAC CTACGACGGA CCGTCATGAG TACGACGGAC CGTCGAGGGG TCTCGTTTCA 5087 |||||||||| | |||||||| |||||||||| |||| |||| |||||||| | |||||||||| ACGACGGAAC CCACGACGGA CCGTCATGAG CACGATGGAC CGTCGAGGAG TCTCGTTTCA 274 AAACACTTAG AAATTTTGAA ATTGGGTACT GAAAATCGAC TCTCTGAACT TCGTAACGGA 5027 |||||||||| ||||| |||| |||||||||| ||||||||| |||||||||| |||||||||| AAACACTTAG AAATTCTGAA ATTGGGTACT AAAAATCGAC TCTCTGAACT TCGTAACGGA 334 ATGGCAGGAC GGACCGTCAC GGGCGTGACG GACCGTCACA GACTCTTTGG TGGAAATTGA 4967 |||||| ||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGGCACGAC GGACCGTCAC GGGCGTGACG GACCGTCACA GACTCTTTGG TGGAAATTGA 394 GTCTCTGAAC CTT--G-CGA --T------- -GACC-T-GC A-G---GACG GGCCGTCACA 4926 |||||||||| ||| | ||| | |||| | || | | |||| |||| ||||| GTCTCTGAAC CTTGCGACGA CCTGCAGGAC GGACCGTCGC AGGCACGACG GGCCATCACA 454 GGTTGCGTAA TCCCAGTCTG GGTCGGATTT CTGTTAAGTA ATTTAAGGGG TGTTTTGGAC 4866 |||||||||| |||||||||| |||||||||| || ||| |||||||| ||||||||| GGTTGCGTAA TCCCAGTCTG GGTCGGATTT CT-TTACACG TTTTAAGGGA CGTTTTGGAC 513 TATTCCAGCT TTATTTATAA AGTTAGTGGG TTTATGTTAA TAAGTCTAAT TACTTGGGTG 4806 |||||| || ||| |||||| |||||||||| |||||||||| |||||||||| ||| |||| | TATTCCTACT TTAATTATAA AGTTAGTGGG TTTATGTTAA TAAGTCTAAT TACCTGGGGG 573 TTAAAAGAGG TAACCTTGAG TAAATTAGTG GGTTATTATT GCCATCTTTT ATTCTTAATT 4746 |||||||||| |||||||||| ||||||| || |||||||||| ||||||||| |||||||||| TTAAAAGAGG TAACCTTGAG TAAATTATTG GGTTATTATT -CCATCTTTT ATTCTTAATT 632 ATATGCTA 4738 |||||||| ATATGCTA 640 hqPGS_C06HBa0024L21.1-7-_SGN-E398551+ (5206 4738) ******************************************************************************** EST sequence 80 +strand 630 n (File: SGN-E396038+) 1 TTTTTTTTTT ATTATTTAAC TCTATGAAAA ATGAGTAAAT TTTTTATATT TTATGGCATA 61 ATTTTTTCAT TAATTCATGG TTGAGAAAAT CTTTGTTTCT AATAGTGTTA TAAATCGTAA 121 AATAATAATA ATATTTAAGT AGGAAGAACA TAAATGTAAC GACCTGTTTA GTCGTTTTGA 181 GTAGCAGATT TTATTTTTGG AAAAACAGGT TGAGACGACG GAACCCACGA CGGACCGTCA 241 TGAGCACGAT GGACCGTCGA GGAGTCTCGT TTCAAAACAC TTAGAAATTC TGAAATTGGG 301 TACTAAAAAT CGACTCTCTG AACTTCGTAA CGGAATGGCA CGACGGACCG TCACGGGCGT 361 GACGGACCGT CACAGACTCT TTGGTGGAAA TTGAGTCTCT GAACCTTGCG ACGACCTGCA 421 GGACGGACCG TCGCAGGCAC GACGGGCCAT CACAGGTTGC GTAATCCCAG TCTGGGTCGG 481 ATTTCTTTAC ACGTTTTAAG GGACGTTTTG GACTATTCCT ACTTTAATTA TAAAGTTAGT 541 GGGTTTATGT TAATAAGTCT AATTACCTGG GGGTTAAAAG AGGTAACCTT GAGTAAATTA 601 GTGGGTTATT ATTCCATCTT TTATTCTTAA Predicted gene structure (within gDNA segment 8327 to 4138): Exon 1 5206 4748 ( 459 n); cDNA 155 630 ( 476 n); score: 0.842 PPA cDNA 10 1 MATCH C06HBa0024L21.1-7- SGN-E396038+ 0.842 459 0.729 C PGS_C06HBa0024L21.1-7-_SGN-E396038+ (5206 4748) Alignment (genomic DNA sequence = upper lines): TGTAACGACC TGTTTAGTCG TTTTGAGCAG CAGATTTTAT TTCTGGAAAA ACAGGCTGAG 5147 |||||||||| |||||||||| ||||||| || |||||||||| || ||||||| ||||| |||| TGTAACGACC TGTTTAGTCG TTTTGAGTAG CAGATTTTAT TTTTGGAAAA ACAGGTTGAG 214 ACGACGGAAC CTACGACGGA CCGTCATGAG TACGACGGAC CGTCGAGGGG TCTCGTTTCA 5087 |||||||||| | |||||||| |||||||||| |||| |||| |||||||| | |||||||||| ACGACGGAAC CCACGACGGA CCGTCATGAG CACGATGGAC CGTCGAGGAG TCTCGTTTCA 274 AAACACTTAG AAATTTTGAA ATTGGGTACT GAAAATCGAC TCTCTGAACT TCGTAACGGA 5027 |||||||||| ||||| |||| |||||||||| ||||||||| |||||||||| |||||||||| AAACACTTAG AAATTCTGAA ATTGGGTACT AAAAATCGAC TCTCTGAACT TCGTAACGGA 334 ATGGCAGGAC GGACCGTCAC GGGCGTGACG GACCGTCACA GACTCTTTGG TGGAAATTGA 4967 |||||| ||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGGCACGAC GGACCGTCAC GGGCGTGACG GACCGTCACA GACTCTTTGG TGGAAATTGA 394 GTCTCTGAAC CTT--G-CGA --T------- -GACC-T-GC A-G---GACG GGCCGTCACA 4926 |||||||||| ||| | ||| | |||| | || | | |||| |||| ||||| GTCTCTGAAC CTTGCGACGA CCTGCAGGAC GGACCGTCGC AGGCACGACG GGCCATCACA 454 GGTTGCGTAA TCCCAGTCTG GGTCGGATTT CTGTTAAGTA ATTTAAGGGG TGTTTTGGAC 4866 |||||||||| |||||||||| |||||||||| || ||| |||||||| ||||||||| GGTTGCGTAA TCCCAGTCTG GGTCGGATTT CT-TTACACG TTTTAAGGGA CGTTTTGGAC 513 TATTCCAGCT TTATTTATAA AGTTAGTGGG TTTATGTTAA TAAGTCTAAT TACTTGGGTG 4806 |||||| || ||| |||||| |||||||||| |||||||||| |||||||||| ||| |||| | TATTCCTACT TTAATTATAA AGTTAGTGGG TTTATGTTAA TAAGTCTAAT TACCTGGGGG 573 TTAAAAGAGG TAACCTTGAG TAAATTAGTG GGTTATTATT GCCATCTTTT ATTCTTAA 4748 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| |||||||| TTAAAAGAGG TAACCTTGAG TAAATTAGTG GGTTATTATT -CCATCTTTT ATTCTTAA 630 hqPGS_C06HBa0024L21.1-7-_SGN-E396038+ (5206 4748) ******************************************************************************** EST sequence 36 -strand 356 n (File: SGN-E396037-) 1 GTCACAGACT CTTTGGTGGA AAGAGAGTCT CTGAACCTAG AGAAGACCTG CAGGACGGAC 61 CGTCGCAGGC ACGACGGGCC ATCACAGGTT GCGTAATCCC AGTCTGGGTC GGATTTCTTT 121 ACACGTTTTA AGGGACGTTT TGGACTATTC CTACTTTAAT TATAAAGTTA GTGGGTTTAT 181 GTTAATAAGT CTAATTACCT GGGGGTTAAA AGAGGTAACC TCGAGTAAAA CATCCATCTC 241 AATACCCCAT TCATCCTCAT CTTCTTCTCG TGAATCGTGG TAGTCATCAT CATCATCATC 301 ATGTTAATCA TATAGATGCG GCATAGTGGT AAACAAAACA TGAGGCTCCG CTGCCC Predicted gene structure (within gDNA segment 6350 to 2840): Exon 1 4939 4782 ( 158 n); cDNA 73 229 ( 157 n); score: 0.905 MATCH C06HBa0024L21.1-7- SGN-E396037- 0.905 158 0.444 C PGS_C06HBa0024L21.1-7-_SGN-E396037- (4939 4782) Alignment (genomic DNA sequence = upper lines): GACGGGCCGT CACAGGTTGC GTAATCCCAG TCTGGGTCGG ATTTCTGTTA AGTAATTTAA 4880 |||||||| | |||||||||| |||||||||| |||||||||| |||||| ||| ||||| GACGGGCCAT CACAGGTTGC GTAATCCCAG TCTGGGTCGG ATTTCT-TTA CACGTTTTAA 131 GGGGTGTTTT GGACTATTCC AGCTTTATTT ATAAAGTTAG TGGGTTTATG TTAATAAGTC 4820 ||| ||||| |||||||||| ||||| || |||||||||| |||||||||| |||||||||| GGGACGTTTT GGACTATTCC TACTTTAATT ATAAAGTTAG TGGGTTTATG TTAATAAGTC 191 TAATTACTTG GGTGTTAAAA GAGGTAACCT TGAGTAAA 4782 ||||||| || || ||||||| |||||||||| ||||||| TAATTACCTG GGGGTTAAAA GAGGTAACCT CGAGTAAA 229 hqPGS_C06HBa0024L21.1-7-_SGN-E396037- (4939 4782) ******************************************************************************** EST sequence 70 +strand 542 n (File: SGN-E252199+) 1 CTTGATGAGA ATTTGTCTTA TGAGGAGGAG CCTGTTGCCA TTTTAGATAG AGAAGTCCGC 61 AAATTGAGGT CAAGGGAGAT TGCATCTATC AAAGTTCAAT GGAAGAATCG ACCAGTTGAA 121 GAATCCACTT GGGAGAAGGA AGTTGATATG CGAGAAAGAT ACCCATACCT GTTTACAGAT 181 TCAGGTACTC CTTTTCGCCC TTGTTTTTCT TCTTGTGATC GTTCGGGGAC GAACGATGGG 241 TAAATTGGTA TCTATTGTAA CGACCTGTTT AGTCGTTTTG AGTAACAGAT TTTATTTCTG 301 GAAAAACTGA CTGAGACGAC GGATCCCACG ACGGACCGTC GAGGGGGTCT CGTTCCAAAA 361 CACTTAGAAT TCTGAAATTT GGGTACTGAA ATCGACTCTC TGAACTTCGT GACGGAATGG 421 CAGGACGGAC CGTCACAGGC GTGATGGGCC GTCACAGACC CTTGGTAAAA ATCTAGTCTC 481 TGAACTCTGT GACGGACGTG CAGGACGGAC CGTCACAGAC TGCGTAATCC CAGGCTGGGT 541 CG Predicted gene structure (within gDNA segment 6726 to 3319): Exon 1 5460 4901 ( 560 n); cDNA 1 542 ( 542 n); score: 0.871 MATCH C06HBa0024L21.1-7- SGN-E252199+ 0.871 560 1.033 C PGS_C06HBa0024L21.1-7-_SGN-E252199+ (5460 4901) Alignment (genomic DNA sequence = upper lines): CTTGATGAGA ATTTGACTTA TGAGGAGAAG CCTGTTGCCA TTCTAAATAG AGAAATTCGC 5401 |||||||||| ||||| |||| ||||||| || |||||||||| || || |||| |||| | ||| CTTGATGAGA ATTTGTCTTA TGAGGAGGAG CCTGTTGCCA TTTTAGATAG AGAAGTCCGC 60 AAGTTGAGAT CAATGGAGAT TGCATCTATC AAAGTTCAAT GGAAGAATCG ACCAGTTGAA 5341 || ||||| | ||| |||||| |||||||||| |||||||||| |||||||||| |||||||||| AAATTGAGGT CAAGGGAGAT TGCATCTATC AAAGTTCAAT GGAAGAATCG ACCAGTTGAA 120 TAGTCCACTT GGGAGAAGGA GGCTGATATG CGAGAAAGAT ACCCACACCT GTTTACAGAT 5281 | ||||||| |||||||||| | ||||||| |||||||||| ||||| |||| |||||||||| GAATCCACTT GGGAGAAGGA AGTTGATATG CGAGAAAGAT ACCCATACCT GTTTACAGAT 180 TCAGGTACTC ATTTTCGCCC TTG-TATCCT TCTTATGATC GTTCGGGGAC GAACGATGGG 5222 |||||||||| ||||||||| ||| | | || |||| ||||| |||||||||| |||||||||| TCAGGTACTC CTTTTCGCCC TTGTTTTTCT TCTTGTGATC GTTCGGGGAC GAACGATGGG 240 TAAATTGGTA TCTATTGTAA CGACCTGTTT AGTCGTTTTG AGCAGCAGAT TTTATTTCTG 5162 |||||||||| |||||||||| |||||||||| |||||||||| || | ||||| |||||||||| TAAATTGGTA TCTATTGTAA CGACCTGTTT AGTCGTTTTG AGTAACAGAT TTTATTTCTG 300 GAAAAACAGG CTGAGACGAC GGAACCTACG ACGGACCGTC ATGAGTACGA CGGACCGTCG 5102 ||||||| | |||||||||| ||| || ||| ||||| | | || | || | GAAAAACTGA CTGAGACGAC GGATCCCACG ACGGA-C--C ----GT---- C-GA-----G 343 AGGGGTCTCG TTTCAAAACA CTTAGAAATT TTGAAA-TTG GGTACTGAAA ATCGACTCTC 5043 ||||||||| || ||||||| ||||| |||| ||||| ||| ||||||| || |||||||||| -GGGGTCTCG TTCCAAAACA CTTAG-AATT CTGAAATTTG GGTACTG-AA ATCGACTCTC 400 TGAACTTCGT AACGGAATGG CAGGACGGAC CGTCACGGGC GTGACGGACC GTCACAGACT 4983 |||||||||| ||||||||| |||||||||| |||||| ||| |||| || || ||||||||| TGAACTTCGT GACGGAATGG CAGGACGGAC CGTCACAGGC GTGATGGGCC GTCACAGAC- 459 CTTTGGTGGA AATTGAGTCT CTGAACCTTG CGA-TGACCT GCAGGACGGG CCGTCACAGG 4924 | ||||| | ||| ||||| |||||| || || ||| | ||||||||| ||||||||| CCTTGGTAAA AATCTAGTCT CTGAACTCTG TGACGGACGT GCAGGACGGA CCGTCACAGA 519 TTGCGTAATC CCAGTCTGGG TCG 4901 ||||||||| |||| ||||| ||| CTGCGTAATC CCAGGCTGGG TCG 542 hqPGS_C06HBa0024L21.1-7-_SGN-E252199+ (5460 4901) ******************************************************************************** EST sequence 75 +strand 519 n (File: SGN-E374998+) 1 TTTTTTTTTA TGAATTAGCT CAATGAAAAA TGAGTAAATT TTTTATATTT TATGGCATAA 61 TTTTTTCATT AATTCATGGT TGAGAAAATC TTTGTTTCTA ATAGTGTTAT AAATCGTAAA 121 ATAATAATAA TATTTAAGTA GGAAGAACAT AAATGTAACG ACCTGTTTAG TCGTTTTGAG 181 TAGCAGATTT TATTTTTGGA AAAACAGGTT GAGACGACGG AACCCACGAC GGACCGTCAT 241 GAGCACGATG GACCGTCGAG GAGTCTCGTT TCAAAACACT TAGAAATTCT GAAATTGGGT 301 ACTAAAAATC GACTCTCTGA ACTTCGTAAC GGAATGGCAC GACGGACCGT CACGGGCGTG 361 ACGGACCGTC ACAGACTCTT TGGTGGAAAT TGAGTCTCTG AACCTTGCGA CGACCTGCAG 421 GACGGACCGT CGCAGGCACG ACGGGCCATC ACAGGTTGCG TAATCCCAGT CTGGGTCGGA 481 TTTCTTTTAC ACGTTTTAAG GGACGTTATG TACTATTCC Predicted gene structure (within gDNA segment 8317 to 3944): Exon 1 5206 4925 ( 282 n); cDNA 154 435 ( 282 n); score: 0.954 PPA cDNA 11 1 MATCH C06HBa0024L21.1-7- SGN-E374998+ 0.954 282 0.543 C PGS_C06HBa0024L21.1-7-_SGN-E374998+ (5206 4925) Alignment (genomic DNA sequence = upper lines): TGTAACGACC TGTTTAGTCG TTTTGAGCAG CAGATTTTAT TTCTGGAAAA ACAGGCTGAG 5147 |||||||||| |||||||||| ||||||| || |||||||||| || ||||||| ||||| |||| TGTAACGACC TGTTTAGTCG TTTTGAGTAG CAGATTTTAT TTTTGGAAAA ACAGGTTGAG 213 ACGACGGAAC CTACGACGGA CCGTCATGAG TACGACGGAC CGTCGAGGGG TCTCGTTTCA 5087 |||||||||| | |||||||| |||||||||| |||| |||| |||||||| | |||||||||| ACGACGGAAC CCACGACGGA CCGTCATGAG CACGATGGAC CGTCGAGGAG TCTCGTTTCA 273 AAACACTTAG AAATTTTGAA ATTGGGTACT GAAAATCGAC TCTCTGAACT TCGTAACGGA 5027 |||||||||| ||||| |||| |||||||||| ||||||||| |||||||||| |||||||||| AAACACTTAG AAATTCTGAA ATTGGGTACT AAAAATCGAC TCTCTGAACT TCGTAACGGA 333 ATGGCAGGAC GGACCGTCAC GGGCGTGACG GACCGTCACA GACTCTTTGG TGGAAATTGA 4967 |||||| ||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGGCACGAC GGACCGTCAC GGGCGTGACG GACCGTCACA GACTCTTTGG TGGAAATTGA 393 GTCTCTGAAC CTTGCGATGA CCTGCAGGAC GGGCCGTCAC AG 4925 |||||||||| ||||||| || |||||||||| || ||||| | || GTCTCTGAAC CTTGCGACGA CCTGCAGGAC GGACCGTCGC AG 435 hqPGS_C06HBa0024L21.1-7-_SGN-E374998+ (5206 4925) ******************************************************************************** EST sequence 85 +strand 525 n (File: SGN-E396069+) 1 TTTTTTTTTT ATGAATTAGC TCAATGAAAA ATGAGTAAAT TTTTTATATT TTATGGCATA 61 ATTTTTTCAT TAATTCATGG TTGAGAAAAT CTTTGTTTCT AATAGTGTTA TAAATCGTAA 121 AATAATAATA ATATTTAAGT AGGAAGAACA TAAATGTAAC GACCTGTTTA GTCGTTTTGA 181 GTAGCAGATT TTATTTTTGG AAAAACAGGT TGAGACGACG GAACCCACGA CGGACCGTCA 241 TGAGCACGAT GGACCGTCGA GGAGTCTCGT TTCAAAACAC TTAGAAATTC TGAAATTGGG 301 TACTAAAAAT CGACTCTCTG AACTTCGTAA CGGAATGGCA CGACGGACCG TCACGGGCGT 361 GACGGACCGT CACAGACTCT TTGGTGGAAA TTGAGTCTCT GAACCTTGCG ACGACCTGCA 421 GGACGGACCG TCGCAGGCAC GACGGGCCAT CACAGGTTGC GTAATCCCGG TGGGGGTCGG 481 ATTTCTTTAC ACGTTTTAAG GGACGTTTTG GACTATTCCT ACTTT Predicted gene structure (within gDNA segment 8327 to 3200): Exon 1 5206 4925 ( 282 n); cDNA 155 436 ( 282 n); score: 0.954 PPA cDNA 12 1 MATCH C06HBa0024L21.1-7- SGN-E396069+ 0.954 282 0.537 C PGS_C06HBa0024L21.1-7-_SGN-E396069+ (5206 4925) Alignment (genomic DNA sequence = upper lines): TGTAACGACC TGTTTAGTCG TTTTGAGCAG CAGATTTTAT TTCTGGAAAA ACAGGCTGAG 5147 |||||||||| |||||||||| ||||||| || |||||||||| || ||||||| ||||| |||| TGTAACGACC TGTTTAGTCG TTTTGAGTAG CAGATTTTAT TTTTGGAAAA ACAGGTTGAG 214 ACGACGGAAC CTACGACGGA CCGTCATGAG TACGACGGAC CGTCGAGGGG TCTCGTTTCA 5087 |||||||||| | |||||||| |||||||||| |||| |||| |||||||| | |||||||||| ACGACGGAAC CCACGACGGA CCGTCATGAG CACGATGGAC CGTCGAGGAG TCTCGTTTCA 274 AAACACTTAG AAATTTTGAA ATTGGGTACT GAAAATCGAC TCTCTGAACT TCGTAACGGA 5027 |||||||||| ||||| |||| |||||||||| ||||||||| |||||||||| |||||||||| AAACACTTAG AAATTCTGAA ATTGGGTACT AAAAATCGAC TCTCTGAACT TCGTAACGGA 334 ATGGCAGGAC GGACCGTCAC GGGCGTGACG GACCGTCACA GACTCTTTGG TGGAAATTGA 4967 |||||| ||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGGCACGAC GGACCGTCAC GGGCGTGACG GACCGTCACA GACTCTTTGG TGGAAATTGA 394 GTCTCTGAAC CTTGCGATGA CCTGCAGGAC GGGCCGTCAC AG 4925 |||||||||| ||||||| || |||||||||| || ||||| | || GTCTCTGAAC CTTGCGACGA CCTGCAGGAC GGACCGTCGC AG 436 hqPGS_C06HBa0024L21.1-7-_SGN-E396069+ (5206 4925) ******************************************************************************** EST sequence 92 +strand 763 n (File: SGN-E354383+) 1 AGATTCGATG GAGAAAGTGA AGTCTATTCA AGAAAAGCTT CTAGCGGCGC AAAGTAGACA 61 AAAAGAATAT GCAGATCGAA AGGTTAGAGA CTTAGAGTTC ATGGAGGGCG AACAAGTCTT 121 GTTGAAAGTC TCGCCAATGA AAGGGGTGAT GCGGTTTCGT AAAAGAGGTA AGTTAAGTCC 181 AAGGTATATT GGACCATTTG AGGTACTAAA GCGAGTAGGG GAGGTGGCTT ATGAATTAGC 241 CTTACCTCCA GGGCTGTCCG GAGTACATCC GGTATTTCAT GTATCCATGT TGAAAAGATA 301 CCATGGAGAT GGAAACTACA TCATCCGTTG GGATTCAGTT TCGCTTGGTG AGAATTGGAC 361 TTATGAGGAG GAACCAGTTG CTATTTTAGA TAGAGAGGTT CGCAAGTTGA GGTCGAGAGA 421 AATTGCATCC ATCAAAGTTC AATGGAAGAA TCGACCGGTT GAAGAAGCTA CTTGGGAGAA 481 GGAGGCAGAT ATGCAAGAAA AATACCCACA TCTGTTTACA GATTCAGGTA CTCCTTTTCG 541 CCATTGTTTT TCTTCATTTG ATCGTTCGGG GACGAACGAT GGGTAAATTG GTATCTATTG 601 TAACGACCTG TTTAGTCGTT TTGAGCAGCA GATTTTAATT CTGGAAAAAC TGGCCAAGAC 661 CACGGGCACT GCGACGGACC GTCACAGGCA CGACGGCCCG TCGAAGGTGC ATCGTTTCAG 721 CATACTTAGA ATTTCTGAAT TTGGATATGA AAATCGACTC TCT Predicted gene structure (within gDNA segment 8004 to 3298): Exon 1 5801 5042 ( 760 n); cDNA 2 763 ( 762 n); score: 0.864 MATCH C06HBa0024L21.1-7- SGN-E354383+ 0.864 760 0.996 C PGS_C06HBa0024L21.1-7-_SGN-E354383+ (5801 5042) Alignment (genomic DNA sequence = upper lines): GATTCATTAG AGAAGGTGAA ATCTATTCAA GAAAAGCTCT TAGCGGCTCA AAGCAGGCAA 5742 ||||| | | |||| ||||| ||||||||| |||||||| ||||||| || ||| || ||| GATTCGATGG AGAAAGTGAA GTCTATTCAA GAAAAGCTTC TAGCGGCGCA AAGTAGACAA 61 AAGGAATATG CAGATCGAAA GGTTAGAGAC TTGGAGTTCA TGGAGGGTGA GCAAGTCTTG 5682 || ||||||| |||||||||| |||||||||| || ||||||| ||||||| || ||||||||| AAAGAATATG CAGATCGAAA GGTTAGAGAC TTAGAGTTCA TGGAGGGCGA ACAAGTCTTG 121 CTGAAGGTTT CGCCCATGAA AGGGGTGATG CGGTTTGGAA AAAGAGGTAA GCTAAGCCCA 5622 |||| || | |||| ||||| |||||||||| |||||| | | |||||||||| | |||| ||| TTGAAAGTCT CGCCAATGAA AGGGGTGATG CGGTTTCGTA AAAGAGGTAA GTTAAGTCCA 181 AGGTATATTG GACCATTTAA AGTACTTAAG CGAGTAGGGG AGGTGGCTTA TGAATTAGTC 5562 |||||||||| |||||||| | ||||| ||| |||||||||| |||||||||| |||||||| | AGGTATATTG GACCATTTGA GGTACTAAAG CGAGTAGGGG AGGTGGCTTA TGAATTAGCC 241 TTGCCCCCAG GACTGTCAGG AGTGCATCCG GTATTTCATG TGTCTATGTT GAAAAGATAC 5502 || || |||| | ||||| || ||| |||||| |||||||||| | || ||||| |||||||||| TTACCTCCAG GGCTGTCCGG AGTACATCCG GTATTTCATG TATCCATGTT GAAAAGATAC 301 CATGG-GGTG AAAACTACAT CATTCGTTGG GATTCGGTTC TTCTTGATGA GAATTTGACT 5443 ||||| | || ||||||||| ||| |||||| ||||| ||| |||| ||| ||||| |||| CATGGAGATG GAAACTACAT CATCCGTTGG GATTCAGTTT CGCTTGGTGA GAATTGGACT 361 TATGAGGAGA AGCCTGTTGC CATTCTAAAT AGAGAAATTC GCAAGTTGAG ATCAATGGAG 5383 ||||||||| | || ||||| ||| || || ||||| ||| |||||||||| || | || TATGAGGAGG AACCAGTTGC TATTTTAGAT AGAGAGGTTC GCAAGTTGAG GTCGAGAGAA 421 ATTGCATCTA TCAAAGTTCA ATGGAAGAAT CGACCAGTTG AATAGTCCAC TTGGGAGAAG 5323 |||||||| | |||||||||| |||||||||| ||||| |||| || | | || |||||||||| ATTGCATCCA TCAAAGTTCA ATGGAAGAAT CGACCGGTTG AAGAAGCTAC TTGGGAGAAG 481 GAGGCTGATA TGCGAGAAAG ATACCCACAC CTGTTTACAG ATTCAGGTAC TCATTTTCGC 5263 ||||| |||| ||| ||||| ||||||||| |||||||||| |||||||||| || ||||||| GAGGCAGATA TGCAAGAAAA ATACCCACAT CTGTTTACAG ATTCAGGTAC TCCTTTTCGC 541 CCTTG-TATC CTTCTTATGA TCGTTCGGGG ACGAACGATG GGTAAATTGG TATCTATTGT 5204 | ||| | | |||| | ||| |||||||||| |||||||||| |||||||||| |||||||||| CATTGTTTTT CTTCATTTGA TCGTTCGGGG ACGAACGATG GGTAAATTGG TATCTATTGT 601 AACGACCTGT TTAGTCGTTT TGAGCAGCAG ATTTTATTTC TGGAAAAACA GGCTGAGACG 5144 |||||||||| |||||||||| |||||||||| |||||| ||| ||||||||| ||| |||| AACGACCTGT TTAGTCGTTT TGAGCAGCAG ATTTTAATTC TGGAAAAACT GGCCAAGACC 661 ACGGAACCTA CGACGGACCG TCATGAGTAC GACGGACCGT CG-AGGGGTC TCGTTTCAAA 5085 |||| || |||||||||| ||| | || ||||| |||| || ||| | |||||||| ACGGGCACTG CGACGGACCG TCACAGGCAC GACGGCCCGT CGAAGGTGCA TCGTTTCAGC 721 ACACTTAGAA ATTTTGAAAT TGGGTACTGA AAATCGACTC TCT 5042 | |||||||| || |||| | ||| || ||| |||||||||| ||| ATACTTAGAA TTTCTGAATT TGGATA-TGA AAATCGACTC TCT 763 hqPGS_C06HBa0024L21.1-7-_SGN-E354383+ (5801 5042) ******************************************************************************** EST sequence 95 +strand 565 n (File: SGN-E275667+) 1 GCGCTCAATG AAAGATTAGA TCTATTCAAT AATAATGTGA TTACTTTTGC ATATGCACCA 61 TGTGATGTCG ATATTCATAA TGTCAAAATT TTAAAAGACA TTGAGGCGAA TTGAGTGTAT 121 TCTAAAAAAG TTTAATATTT GAGAAAAGAT ATAAAAATAC CATTAAAGTT ATTTTAAATT 181 ATTAAAAAGA TATCTTAACT TAGCGGACAT TTTATTACTC CCTTAAATAA TTTTAAAGTG 241 TTGTAAATAT CTCATTTTTT AACCATCCTC ACTTGCAAAA AAAGAAGTTC AATTACGCAT 301 CAATTATAAT CTGCCACGTA TTAATTTTTA TTTTTATTTT TCTTATTTTA TCAATTTCAT 361 TTTCTTTTTC TTTTTCTTTT TCTCTTTCTT CTTCTTCCCT TTTCTCTTTC TTTCTTCTTT 421 CTTTATTCTC TTTCTTCTTT TTTTTCATTA CTGTAACGAC CTGTTTAGTC GTTTTGAGCA 481 GCAGATTTTA TTTCTGGAAA ATTGGCTGAA ACAACGGAAC CCACGACGGA CCGTCACAGG 541 CACGACGGTC CGTCACAGAT GTCTC Predicted gene structure (within gDNA segment 10316 to 3907): Exon 1 8581 8492 ( 90 n); cDNA 356 441 ( 86 n); score: 0.683 Intron 1 8491 5218 (3274 n); Pd: 0.000 (s: 0.66), Pa: 0.000 (s: 0.90) Exon 2 5217 5093 ( 125 n); cDNA 442 565 ( 124 n); score: 0.828 MATCH C06HBa0024L21.1-7- SGN-E275667+ 0.767 215 0.381 C PGS_C06HBa0024L21.1-7-_SGN-E275667+ (8581 8492,5217 5093) Alignment (genomic DNA sequence = upper lines): TTTGTTTTCC TCTTCGTTTC TCCTCTCTCT CGATCGTTCT TC-TCCCTCT CTTTGTTCTT 8523 || ||||| | ||| ||| | || | ||| | || |||| || ||||| | | ||||| TTCATTTTCT TTTTCTTTT- T-CTTTTTCT CTTTC-TTCT TCTTCCCTTT TCTCTTTCTT 412 TCTATTTTTC TTATTCAACC CTCTTTCTTT TGCCCTAATT AGCATATAAT TAAGTATAAA 8463 ||| ||| |||||| | || |||||| | TCTTCTTTCT TTATTC-TCT TTC-TTCTTT T......... .......... .......... 441 AGATGATGAA TTAACCCTTT AATTAATTCA AGGTTATCTC CTTTAACCCT CAAGTAGTTA 8403 .......... .......... .......... .......... .......... .......... 441 AATTATTAAC ATTAACCCAC TAAATTTATA ATTATAGCAG GAATAGTCCA AAATGTCCCT 8343 .......... .......... .......... .......... .......... .......... 441 TAAAACACTT AAAGAAATCC GACTCAGCCT AGGATCACGC AGCCTGTGAC GGGCCGTCGT 8283 .......... .......... .......... .......... .......... .......... 441 GCCTGCGACG GTCTGTCTTG CTGCTTCCGT CACAGAGTTC AGAGACTAGA TTTTTACCAA 8223 .......... .......... .......... .......... .......... .......... 441 GGGTCTGTGA CGGTCCGTCC TGCCACTTCG TCGTGAAGTT CAGAGAGTCG ATTTCAGTAT 8163 .......... .......... .......... .......... .......... .......... 441 CCAAATTTTA GAATTCTAAG TGTTTTGGAA CGAGACCCCC ACGACGGTCT GTCGTGCCCA 8103 .......... .......... .......... .......... .......... .......... 441 TGCCGGTTCA TCGTGGGATC CGTCGACTTA GCCAGTTTTT CCAGAAATAA AATCTGCTGC 8043 .......... .......... .......... .......... .......... .......... 441 TCAAAACGAC TAAACAGGTC GTTACAATAG ATACCAATTT ACCCATCGTT CGTCTCCGAA 7983 .......... .......... .......... .......... .......... .......... 441 CGATCACAAG AAGGAAAACA AGGGCGAAAA TGAGTACCTG AATCTGTAAA CAGGTGTGGG 7923 .......... .......... .......... .......... .......... .......... 441 TATCTTTCTC GCATATCAGT CTCCTTCTCC CAAGTGGACT CTTCAACTGG TCGATTCTTC 7863 .......... .......... .......... .......... .......... .......... 441 CATTGAACTT TGATAGATGC AATCTCCATT GATCTCAACT TGCGAATTTC TCTATTTAGA 7803 .......... .......... .......... .......... .......... .......... 441 ATGGCAACAG GCTTCTCCTC ATAAGTCAAA TTCTCATCAA GAAGAACCGA ATCCCAACGA 7743 .......... .......... .......... .......... .......... .......... 441 ATGATGTAGT TTTCACCCCA TGGTATCTTT TCAACATAGA CACATGAAAT ACCGGATGCA 7683 .......... .......... .......... .......... .......... .......... 441 CTCCTGACAG TCCTGGGGGC AAGACTAATT CATAAGCCAC CTCCCCTACT CGCTTAAGTA 7623 .......... .......... .......... .......... .......... .......... 441 CTTTAAATGG TCCAATATAC CTTGGGCTTA GCTTACCTCT TTTTCCAAAC CGCATCACCC 7563 .......... .......... .......... .......... .......... .......... 441 CTTTCATGGG CGAAACCTTC AGCAAGACTT GCTCACCCTC CATGAACTCC AAGTCTCTAA 7503 .......... .......... .......... .......... .......... .......... 441 CCTTTCGATC TGCATATTCC TTTTGCCTGC TTTGAGCCGC TAAGAGCTTT TCTTGAATAG 7443 .......... .......... .......... .......... .......... .......... 441 ATTTCACCTT CTCTAATGAA TCCCTCAAAA GATCAGTACC CCAAGGTCTA ACCTCAAATG 7383 .......... .......... .......... .......... .......... .......... 441 CATCAAACCA ACCAATGGGA GACCTACATC TCCTCCCATA CAATGCTTCG AAAGGAGCCA 7323 .......... .......... .......... .......... .......... .......... 441 TATCAATACT TGAGTGATAG CTATTATTGT ATGAAAACTC CGCTAAGGGT AAGAATTTAT 7263 .......... .......... .......... .......... .......... .......... 441 CGCAATGACC CCCAAATTCT ATCACACATG CACGAAGCAT ATCTTCCAAC ACCTGAATTG 7203 .......... .......... .......... .......... .......... .......... 441 TTCGTTCCGA CTGACCATCG GTCTGAGGGT GAAATGCAGT ACTAAGGTCC AACCTAGTAC 7143 .......... .......... .......... .......... .......... .......... 441 CTAATTCAGC ATGCAATGTT CTCCAAAACT TAGAAGTAAA TTGCATACCT CTATCTAATA 7083 .......... .......... .......... .......... .......... .......... 441 TGATGGAAAG TGGAACTCCA TGCAATCGAA CAATTTCTGA GATGTAAATT TTGGCTAACT 7023 .......... .......... .......... .......... .......... .......... 441 TCTCTGCATT ATAAGTCACC TTGATCGGAA TGAAATGAGC AGACTTAGTT AATCTGTCCA 6963 .......... .......... .......... .......... .......... .......... 441 CAATTACCCA AATAGAGTCA AACTTCCCCA ATGTCGTTGG AAGACCAACC ACGAAGCCCA 6903 .......... .......... .......... .......... .......... .......... 441 TTGCAATTCC TCCGGGCCTC TGGTGTTCAT ACTTTACTTA TTGACAATTT GGACATTTGG 6843 .......... .......... .......... .......... .......... .......... 441 CAACAAAATC AACAATGTCG CGCTTCATCC TACTCCACCA AAAGTGTTGC TTTAGGTCAC 6783 .......... .......... .......... .......... .......... .......... 441 GATACATCTT GGTTGCACCA GGATGTATAG AATATCAGGA ACTATGAGCC TCTGTAAGAA 6723 .......... .......... .......... .......... .......... .......... 441 TAGTGTGAAC CAAATCATTA ACACGGGGCA CACATACCCT TCCCTTAATT CTCAAAACAC 6663 .......... .......... .......... .......... .......... .......... 441 CTTCCTCATC CATTATTGCT TCTTTAGCCT CTCCTCACAA CACCATATCC CGAATTTGGC 6603 .......... .......... .......... .......... .......... .......... 441 TTAGTTTCTC ATCATCAAAC TGTTTCCCCT TGATCTTTTC AAGAAAAGAA AATCTCGCCT 6543 .......... .......... .......... .......... .......... .......... 441 CCACATTGGC CAAAAATCCT CCCTTCTTAT TTACTTCTAA CCTCATAAGG TCGTTAGCCA 6483 .......... .......... .......... .......... .......... .......... 441 GAGTCTGAAC CTCTCTAGCC AATGGGCGTC TAGAAACTTA TAAGTGAGCT AGACTTCCCA 6423 .......... .......... .......... .......... .......... .......... 441 TGCTCCCTGC TTTTCTACTT AAGGCGTCTG CCACAACATT AGCCTTTCCT GGGTGATACA 6363 .......... .......... .......... .......... .......... .......... 441 AGATGGTAAC ATCATAATCC TTCAGTAGTT TCATCCATCT CCAAAGACAA TCGTGGTTGG 6303 .......... .......... .......... .......... .......... .......... 441 TCTTCCAAAG ACATTGGGGA AGTTTGACTC TATTTGGGTA ATTGTGGACA GATTAACTAA 6243 .......... .......... .......... .......... .......... .......... 441 GTCTGCTCAT TTCATTCCGA TCAAGGTGAC TTATAATGCA GAGAAGTTAG CCAAAATTTA 6183 .......... .......... .......... .......... .......... .......... 441 CATCTCAGAA ATTGTTCGAT TGCATGGAGT TCCACTTTCC ATCATATTAG ATAGAGGTAC 6123 .......... .......... .......... .......... .......... .......... 441 GCAATTTACT TCTAAGTTTT GGAGAACATT GCATGCTGAT TAGGTACTAG GTTGGACCTT 6063 .......... .......... .......... .......... .......... .......... 441 AGTACTGCAT TTCACCCTCA GACCGATGGT CAGTCGGAAC GAACAATTCA GGTGTTGGAA 6003 .......... .......... .......... .......... .......... .......... 441 GATATGCTTC GTGCATGTGT GATAGAATTT GGGGGTCATT GCGATAAATT CTTACCCTTA 5943 .......... .......... .......... .......... .......... .......... 441 GCGGAGTTTT CATACAATAA TAGCTATCAC TCAAGTATTG ATATGGCTCC TTTCGAAGCA 5883 .......... .......... .......... .......... .......... .......... 441 TTGTATGGGA GGAGATGTAG GTCTCCCATT GGTTGGTTTG ATGCATTTGA GGTTAGACCT 5823 .......... .......... .......... .......... .......... .......... 441 TGGGGTATTG ATCTTTTGAG GGATTCATTA GAGAAGGTGA AATCTATTCA AGAAAAGCTC 5763 .......... .......... .......... .......... .......... .......... 441 TTAGCGGCTC AAAGCAGGCA AAAGGAATAT GCAGATCGAA AGGTTAGAGA CTTGGAGTTC 5703 .......... .......... .......... .......... .......... .......... 441 ATGGAGGGTG AGCAAGTCTT GCTGAAGGTT TCGCCCATGA AAGGGGTGAT GCGGTTTGGA 5643 .......... .......... .......... .......... .......... .......... 441 AAAAGAGGTA AGCTAAGCCC AAGGTATATT GGACCATTTA AAGTACTTAA GCGAGTAGGG 5583 .......... .......... .......... .......... .......... .......... 441 GAGGTGGCTT ATGAATTAGT CTTGCCCCCA GGACTGTCAG GAGTGCATCC GGTATTTCAT 5523 .......... .......... .......... .......... .......... .......... 441 GTGTCTATGT TGAAAAGATA CCATGGGGTG AAAACTACAT CATTCGTTGG GATTCGGTTC 5463 .......... .......... .......... .......... .......... .......... 441 TTCTTGATGA GAATTTGACT TATGAGGAGA AGCCTGTTGC CATTCTAAAT AGAGAAATTC 5403 .......... .......... .......... .......... .......... .......... 441 GCAAGTTGAG ATCAATGGAG ATTGCATCTA TCAAAGTTCA ATGGAAGAAT CGACCAGTTG 5343 .......... .......... .......... .......... .......... .......... 441 AATAGTCCAC TTGGGAGAAG GAGGCTGATA TGCGAGAAAG ATACCCACAC CTGTTTACAG 5283 .......... .......... .......... .......... .......... .......... 441 ATTCAGGTAC TCATTTTCGC CCTTGTATCC TTCTTATGAT CGTTCGGGGA CGAACGATGG 5223 .......... .......... .......... .......... .......... .......... 441 GTAAATTGGT ATCTATTGTA ACGACCTGTT TAGTCGTTTT GAGCAGCAGA TTTTATTTCT 5163 || || || |||| |||||||||| |||||||||| |||||||||| |||||||||| .....TTTTC AT-TACTGTA ACGACCTGTT TAGTCGTTTT GAGCAGCAGA TTTTATTTCT 495 GGAAAAACAG GCTGAGACGA CGGAACCTAC GACGGACCGT CATGAGTACG ACGGACCGTC 5103 || |||| | ||||| || | ||||||| || |||||||||| || | ||| |||| ||||| GG-AAAATTG GCTGAAACAA CGGAACCCAC GACGGACCGT CACAGGCACG ACGGTCCGTC 554 -GAGGGGTCT C 5093 || |||| | ACAGATGTCT C 565 hqPGS_C06HBa0024L21.1-7-_SGN-E275667+ (5217 5093) ******************************************************************************** EST sequence 34 -strand 542 n (File: SGN-E353207-) 1 AAAGAAGCAA AAATCGATGA GGAAGGTGTT TTGAGAATAA GGGAAGGAGT ATGTGTACCC 61 CGCGTCGATG ATTTGATTCA CACTATTCTT ATATAGGCTC ATAGTTCGAA GTACTCTATA 121 CATCCTGGTG CAAACAAGAT GTATCGTGAC CTAAAGCAAC ATTTTTGGTG GAGTAGGATG 181 AAGCGTGACA TTGTTAATTT TGTTGCTCAA TGCCCGAATT GTCAGCAAGT AAAGTATGAA 241 CACCAGAGGC CTGGAGGGAC ACTTCAGAGA ATGCCCATTC CTGAATGGAA GTGGGAGAGA 301 ATTGCAATGG ACTTCGTGGT TAGTCATCCA AAGACGATGG GTAGGTATGA CTCTATTTGG 361 GTGATTGTTG ACAGATTAAC TAAGTCTGCT CACTCTATTT CGGTTAAGGT GACTTACAAT 421 GCAGAGAAGT TAGCCAAACT TTACATCTTA GAAATTGTTC GATTGCACGG AGTTCCACTC 481 TCCATCATAT CAGATAGAGG TACGCAATTT ACTTCTAAGT TTTGGAAAAC AGTACATGCC 541 GA Predicted gene structure (within gDNA segment 10988 to 5340): Exon 1 6312 6084 ( 229 n); cDNA 314 542 ( 229 n); score: 0.891 MATCH C06HBa0024L21.1-7- SGN-E353207- 0.891 229 0.423 C PGS_C06HBa0024L21.1-7-_SGN-E353207- (6312 6084) Alignment (genomic DNA sequence = upper lines): TCGTGGTTGG TCTTCCAAAG ACATTGGGGA AGTTTGACTC TATTTGGGTA ATTGTGGACA 6253 |||||||| | || ||||||| || |||| | || |||||| ||||||||| ||||| |||| TCGTGGTTAG TCATCCAAAG ACGATGGGTA GGTATGACTC TATTTGGGTG ATTGTTGACA 373 GATTAACTAA GTCTGCTCAT TTCATTCCGA TCAAGGTGAC TTATAATGCA GAGAAGTTAG 6193 |||||||||| ||||||||| | ||| || | |||||||| ||| |||||| |||||||||| GATTAACTAA GTCTGCTCAC TCTATTTCGG TTAAGGTGAC TTACAATGCA GAGAAGTTAG 433 CCAAAATTTA CATCTCAGAA ATTGTTCGAT TGCATGGAGT TCCACTTTCC ATCATATTAG 6133 ||||| |||| ||||| |||| |||||||||| |||| ||||| |||||| ||| ||||||| || CCAAACTTTA CATCTTAGAA ATTGTTCGAT TGCACGGAGT TCCACTCTCC ATCATATCAG 493 ATAGAGGTAC GCAATTTACT TCTAAGTTTT GGAGAACATT GCATGCTGA 6084 |||||||||| |||||||||| |||||||||| ||| |||| | ||||| || ATAGAGGTAC GCAATTTACT TCTAAGTTTT GGAAAACAGT ACATGCCGA 542 hqPGS_C06HBa0024L21.1-7-_SGN-E353207- (6312 6084) ******************************************************************************** EST sequence 73 +strand 554 n (File: SGN-E352647+) 1 CCTCTGTAAG AATAGTGTGA ATCAAATCGT CGGCACGGGG TACACATACC TTTCCCTTAA 61 TCCTCAAAAC ACCTTCCTTA TCGATTTTTG CTTCTTTAGC CTCTCCTCGC ATTACCTTAT 121 CTCGAATCCA GATCAGTTTC TCATCGGTAA ACTGCTTTCC TTTAATCTTA TCAAGAAAGG 181 AAGATCTTGC CTCCACACAA GCCAAAAATT CTCCCTTCTC ATTTAATTCT AGCCTCATAA 241 GGTCATTAGC CAGAGTCTGA ACCTCTCTAG CCAATGGGCA TCTAGAAACC TGCAAGTGAG 301 CTAGACTTCC CATGCTCCCT GCCTTTCTAC TTAAAGCATC TGCCACAACA TTAGCCTTTC 361 CCGGATGATA CAAGATAGTG ATATCATAGT CCTTCAGTAG CTCCATCGAT CTCCTCTGTC 421 TCAAATTCAA ATCTTTCTGA GTAAAGACAT ACTGTAAACT ACGATGATCC ATATAGACTT 481 CACACTTAAA CCCATAGAGA TAATGGCTCT ATTACTTTAA TGCAATCACT ACTGCCGCTA 541 ACTCCAAATC ATGG Predicted gene structure (within gDNA segment 7892 to 3834): Exon 1 6734 6321 ( 414 n); cDNA 1 414 ( 414 n); score: 0.865 MATCH C06HBa0024L21.1-7- SGN-E352647+ 0.865 414 0.747 C PGS_C06HBa0024L21.1-7-_SGN-E352647+ (6734 6321) Alignment (genomic DNA sequence = upper lines): CCTCTGTAAG AATAGTGTGA ACCAAATCAT TAACACGGGG CACACATACC CTTCCCTTAA 6675 |||||||||| |||||||||| | |||||| | ||||||| ||||||||| ||||||||| CCTCTGTAAG AATAGTGTGA ATCAAATCGT CGGCACGGGG TACACATACC TTTCCCTTAA 60 TTCTCAAAAC ACCTTCCTCA TCCATTATTG CTTCTTTAGC CTCTCCTCAC AACACCATAT 6615 | |||||||| |||||||| | || ||| ||| |||||||||| |||||||| | | ||| ||| TCCTCAAAAC ACCTTCCTTA TCGATTTTTG CTTCTTTAGC CTCTCCTCGC ATTACCTTAT 120 CCCGAATTTG GCTTAGTTTC TCATCATCAA ACTGTTTCCC CTTGATCTTT TCAAGAAAAG 6555 | ||||| | | |||||| ||||| || |||| || || || ||||| |||||||| | CTCGAATCCA GATCAGTTTC TCATCGGTAA ACTGCTTTCC TTTAATCTTA TCAAGAAAGG 180 AAAATCTCGC CTCCACATTG GCCAAAAATC CTCCCTTCTT ATTTACTTCT AACCTCATAA 6495 || |||| || ||||||| ||||||||| ||||||||| ||||| |||| | |||||||| AAGATCTTGC CTCCACACAA GCCAAAAATT CTCCCTTCTC ATTTAATTCT AGCCTCATAA 240 GGTCGTTAGC CAGAGTCTGA ACCTCTCTAG CCAATGGGCG TCTAGAAACT TATAAGTGAG 6435 |||| ||||| |||||||||| |||||||||| ||||||||| ||||||||| | ||||||| GGTCATTAGC CAGAGTCTGA ACCTCTCTAG CCAATGGGCA TCTAGAAACC TGCAAGTGAG 300 CTAGACTTCC CATGCTCCCT GCTTTTCTAC TTAAGGCGTC TGCCACAACA TTAGCCTTTC 6375 |||||||||| |||||||||| || ||||||| |||| || || |||||||||| |||||||||| CTAGACTTCC CATGCTCCCT GCCTTTCTAC TTAAAGCATC TGCCACAACA TTAGCCTTTC 360 CTGGGTGATA CAAGATGGTA ACATCATAAT CCTTCAGTAG TTTCATCCAT CTCC 6321 | || ||||| |||||| || | |||||| | |||||||||| | |||| || |||| CCGGATGATA CAAGATAGTG ATATCATAGT CCTTCAGTAG CTCCATCGAT CTCC 414 hqPGS_C06HBa0024L21.1-7-_SGN-E352647+ (6734 6321) ******************************************************************************** EST sequence 78 +strand 587 n (File: SGN-E352950+) 1 CCTCTGTAAG AATAGTGTGA ATCAAATCGT CGGCACGGGG TACACATACC TTTCCCTTAA 61 TCCTCAAAAC ACCTTCCTTA TCGATTTTTG CTTCTTTAGC CTCTCCTCGC ATTACCTTAT 121 CTCGAATCCA GATCAGTTTC TCATCGGTAA ACTGCTTTCC TTTAATCTTA TCAAGAAAGG 181 AAGATCTTGC CTCCACACAA GCCAAAAATT CTCCCTTCTC ATTTAATTCT AGCCTCATAA 241 GGTCATTAGC CAGAGTCTGA ACCTCTCTAG CCAATGGGCA TCTAGAAACC TGCAAGTGAG 301 CTAGACTTCC CATGCTCCCT GCCTTTCTAC TTAAAGCATC TGCCACAACA TTAGCCTTTC 361 CCGGATGATA CAAGATAGTG ATATCATAGT CCTTCAGTAG CTCCATCGAT CTCCTCTGTC 421 TCAAATTCAA ATCTTTCTGA GTAAAGACAT ACTGTAAACT ACGATGATCC ATATAGACTT 481 CACACTTAAC CCCATAGAGA TAATGTCTCT ATTACTTTAA TGCAATCACT ACTGCCGCTA 541 ACTCCAAATC ATGGGTCGGA TAATTACGTT CATGCACCTT TAATTGC Predicted gene structure (within gDNA segment 7892 to 3504): Exon 1 6734 6321 ( 414 n); cDNA 1 414 ( 414 n); score: 0.865 MATCH C06HBa0024L21.1-7- SGN-E352950+ 0.865 414 0.705 C PGS_C06HBa0024L21.1-7-_SGN-E352950+ (6734 6321) Alignment (genomic DNA sequence = upper lines): CCTCTGTAAG AATAGTGTGA ACCAAATCAT TAACACGGGG CACACATACC CTTCCCTTAA 6675 |||||||||| |||||||||| | |||||| | ||||||| ||||||||| ||||||||| CCTCTGTAAG AATAGTGTGA ATCAAATCGT CGGCACGGGG TACACATACC TTTCCCTTAA 60 TTCTCAAAAC ACCTTCCTCA TCCATTATTG CTTCTTTAGC CTCTCCTCAC AACACCATAT 6615 | |||||||| |||||||| | || ||| ||| |||||||||| |||||||| | | ||| ||| TCCTCAAAAC ACCTTCCTTA TCGATTTTTG CTTCTTTAGC CTCTCCTCGC ATTACCTTAT 120 CCCGAATTTG GCTTAGTTTC TCATCATCAA ACTGTTTCCC CTTGATCTTT TCAAGAAAAG 6555 | ||||| | | |||||| ||||| || |||| || || || ||||| |||||||| | CTCGAATCCA GATCAGTTTC TCATCGGTAA ACTGCTTTCC TTTAATCTTA TCAAGAAAGG 180 AAAATCTCGC CTCCACATTG GCCAAAAATC CTCCCTTCTT ATTTACTTCT AACCTCATAA 6495 || |||| || ||||||| ||||||||| ||||||||| ||||| |||| | |||||||| AAGATCTTGC CTCCACACAA GCCAAAAATT CTCCCTTCTC ATTTAATTCT AGCCTCATAA 240 GGTCGTTAGC CAGAGTCTGA ACCTCTCTAG CCAATGGGCG TCTAGAAACT TATAAGTGAG 6435 |||| ||||| |||||||||| |||||||||| ||||||||| ||||||||| | ||||||| GGTCATTAGC CAGAGTCTGA ACCTCTCTAG CCAATGGGCA TCTAGAAACC TGCAAGTGAG 300 CTAGACTTCC CATGCTCCCT GCTTTTCTAC TTAAGGCGTC TGCCACAACA TTAGCCTTTC 6375 |||||||||| |||||||||| || ||||||| |||| || || |||||||||| |||||||||| CTAGACTTCC CATGCTCCCT GCCTTTCTAC TTAAAGCATC TGCCACAACA TTAGCCTTTC 360 CTGGGTGATA CAAGATGGTA ACATCATAAT CCTTCAGTAG TTTCATCCAT CTCC 6321 | || ||||| |||||| || | |||||| | |||||||||| | |||| || |||| CCGGATGATA CAAGATAGTG ATATCATAGT CCTTCAGTAG CTCCATCGAT CTCC 414 hqPGS_C06HBa0024L21.1-7-_SGN-E352950+ (6734 6321) ******************************************************************************** EST sequence 103 +strand 587 n (File: SGN-E357100+) 1 CCTCTGTAAG AATAGTGTGA ATCAAATCGT CGGCACGGGG TACACATACC TTTCCCTTAA 61 TCCTCAAAAC ACCTTCCTTA TCGATTTTTG CTTCTTTAGC CTCTCCTCGC ATTACCTTAT 121 CTCGAATCCA GATCAGTTTC TCATCGGTAA ACTGCTTTCC TTTAATCTTA TCAAGAAAGG 181 AAGATCTTGC CTCCACACAA GCCAAAAATT CTCCCTTCTC ATTTAATTCT AGCCTCATAA 241 GGTCATTAGC CAGAGTCTGA ACCTCTCTAG CCAATGGGCA TCTAGAAACC TGCAAGTGAG 301 CTAGACTTCC CATGCTCCCT GCCTTTCTAC TTAAAGCATC TGCCACAACA TTAGCCTTTC 361 CCGGATGATA CAAGATAGTG ATATCATAGT CCTTCAGTAG CTCCATCGAT CTCCTCTGTC 421 TCAAATTCAA ATCTTTCTGA GTAAAGACAT ACTGTAAACT ACGATGATCC ATATAGACTT 481 CACACTTAAC CCCATAGAGA TAATGTCTCT ATTACTTTAA TGCAATCACT ACTGCCGCTA 541 ACTCCAAATC ATGGGTCGGA TAATTACGTT CATGCACCTT TAATTGC Predicted gene structure (within gDNA segment 7892 to 3504): Exon 1 6734 6321 ( 414 n); cDNA 1 414 ( 414 n); score: 0.865 MATCH C06HBa0024L21.1-7- SGN-E357100+ 0.865 414 0.705 C PGS_C06HBa0024L21.1-7-_SGN-E357100+ (6734 6321) Alignment (genomic DNA sequence = upper lines): CCTCTGTAAG AATAGTGTGA ACCAAATCAT TAACACGGGG CACACATACC CTTCCCTTAA 6675 |||||||||| |||||||||| | |||||| | ||||||| ||||||||| ||||||||| CCTCTGTAAG AATAGTGTGA ATCAAATCGT CGGCACGGGG TACACATACC TTTCCCTTAA 60 TTCTCAAAAC ACCTTCCTCA TCCATTATTG CTTCTTTAGC CTCTCCTCAC AACACCATAT 6615 | |||||||| |||||||| | || ||| ||| |||||||||| |||||||| | | ||| ||| TCCTCAAAAC ACCTTCCTTA TCGATTTTTG CTTCTTTAGC CTCTCCTCGC ATTACCTTAT 120 CCCGAATTTG GCTTAGTTTC TCATCATCAA ACTGTTTCCC CTTGATCTTT TCAAGAAAAG 6555 | ||||| | | |||||| ||||| || |||| || || || ||||| |||||||| | CTCGAATCCA GATCAGTTTC TCATCGGTAA ACTGCTTTCC TTTAATCTTA TCAAGAAAGG 180 AAAATCTCGC CTCCACATTG GCCAAAAATC CTCCCTTCTT ATTTACTTCT AACCTCATAA 6495 || |||| || ||||||| ||||||||| ||||||||| ||||| |||| | |||||||| AAGATCTTGC CTCCACACAA GCCAAAAATT CTCCCTTCTC ATTTAATTCT AGCCTCATAA 240 GGTCGTTAGC CAGAGTCTGA ACCTCTCTAG CCAATGGGCG TCTAGAAACT TATAAGTGAG 6435 |||| ||||| |||||||||| |||||||||| ||||||||| ||||||||| | ||||||| GGTCATTAGC CAGAGTCTGA ACCTCTCTAG CCAATGGGCA TCTAGAAACC TGCAAGTGAG 300 CTAGACTTCC CATGCTCCCT GCTTTTCTAC TTAAGGCGTC TGCCACAACA TTAGCCTTTC 6375 |||||||||| |||||||||| || ||||||| |||| || || |||||||||| |||||||||| CTAGACTTCC CATGCTCCCT GCCTTTCTAC TTAAAGCATC TGCCACAACA TTAGCCTTTC 360 CTGGGTGATA CAAGATGGTA ACATCATAAT CCTTCAGTAG TTTCATCCAT CTCC 6321 | || ||||| |||||| || | |||||| | |||||||||| | |||| || |||| CCGGATGATA CAAGATAGTG ATATCATAGT CCTTCAGTAG CTCCATCGAT CTCC 414 hqPGS_C06HBa0024L21.1-7-_SGN-E357100+ (6734 6321) ******************************************************************************** EST sequence 77 +strand 542 n (File: SGN-E353207+) 1 TCGGCATGTA CTGTTTTCCA AAACTTAGAA GTAAATTGCG TACCTCTATC TGATATGATG 61 GAGAGTGGAA CTCCGTGCAA TCGAACAATT TCTAAGATGT AAAGTTTGGC TAACTTCTCT 121 GCATTGTAAG TCACCTTAAC CGAAATAGAG TGAGCAGACT TAGTTAATCT GTCAACAATC 181 ACCCAAATAG AGTCATACCT ACCCATCGTC TTTGGATGAC TAACCACGAA GTCCATTGCA 241 ATTCTCTCCC ACTTCCATTC AGGAATGGGC ATTCTCTGAA GTGTCCCTCC AGGCCTCTGG 301 TGTTCATACT TTACTTGCTG ACAATTCGGG CATTGAGCAA CAAAATTAAC AATGTCACGC 361 TTCATCCTAC TCCACCAAAA ATGTTGCTTT AGGTCACGAT ACATCTTGTT TGCACCAGGA 421 TGTATAGAGT ACTTCGAACT ATGAGCCTAT ATAAGAATAG TGTGAATCAA ATCATCGACG 481 CGGGGTACAC ATACTCCTTC CCTTATTCTC AAAACACCTT CCTCATCGAT TTTTGCTTCT 541 TT Predicted gene structure (within gDNA segment 8412 to 5002): Exon 1 6894 6638 ( 257 n); cDNA 286 542 ( 257 n); score: 0.889 MATCH C06HBa0024L21.1-7- SGN-E353207+ 0.889 257 0.474 C PGS_C06HBa0024L21.1-7-_SGN-E353207+ (6894 6638) Alignment (genomic DNA sequence = upper lines): CCTCCGGGCC TCTGGTGTTC ATACTTTACT TATTGACAAT TTGGACATTT GGCAACAAAA 6835 ||||| |||| |||||||||| |||||||||| | ||||||| | || |||| ||||||||| CCTCCAGGCC TCTGGTGTTC ATACTTTACT TGCTGACAAT TCGGGCATTG AGCAACAAAA 345 TCAACAATGT CGCGCTTCAT CCTACTCCAC CAAAAGTGTT GCTTTAGGTC ACGATACATC 6775 | |||||||| | |||||||| |||||||||| ||||| |||| |||||||||| |||||||||| TTAACAATGT CACGCTTCAT CCTACTCCAC CAAAAATGTT GCTTTAGGTC ACGATACATC 405 TTGGTTGCAC CAGGATGTAT AGAATATCAG GAACTATGAG CCTCTGTAAG AATAGTGTGA 6715 ||| |||||| |||||||||| ||| || |||||||||| ||| | |||| |||||||||| TTGTTTGCAC CAGGATGTAT AGAGTACTTC GAACTATGAG CCTATATAAG AATAGTGTGA 465 ACCAAATCAT TAACACGGGG CACACATAC- CCTTCCCTTA ATTCTCAAAA CACCTTCCTC 6656 | |||||||| || ||||| |||||||| ||||||||| |||||||||| |||||||||| ATCAAATCAT CGACGCGGGG TACACATACT CCTTCCCTT- ATTCTCAAAA CACCTTCCTC 524 ATCCATTATT GCTTCTTT 6638 ||| ||| || |||||||| ATCGATTTTT GCTTCTTT 542 hqPGS_C06HBa0024L21.1-7-_SGN-E353207+ (6894 6638) ******************************************************************************** EST sequence 31 -strand 390 n (File: SGN-E242274-) 1 AATTAATTCA AGGTTATCTC CTTCAACCCC CCAAGTAATT GAATTATTAA CATTAAACCA 61 CTAATTTCAT AATTATAAGC AGGAATAGTC CAAAACGCCC CTTAAAACAT TTAACAAAAA 121 TCCGACCCAG TCAGGGTTAC GCAGTCTGTG ACGACCAGTC GTGCCTGCGA CGGTCCGTCC 181 TGCTGCTTCC GTCACAAAGT TCAGAGATTA AATTTCACTA AGGGTTTGTG ACAGCCCGTC 241 ATGCCTGTGA CGGTCCGTCG TGCCATTTCG TCGCGAAGTT CAGAGAGTCG ATCTCAGTAC 301 CCAAATTTCA GAATTCTAAG TGTTTTGGAA CGAGACACCC TCCACGGTCC GTCGTGCTCA 361 TGACGGTCCG TCGTGGGATC CGTCGACTCA Predicted gene structure (within gDNA segment 10467 to 6987): Exon 1 8442 8196 ( 247 n); cDNA 1 248 ( 248 n); score: 0.832 Intron 1 8195 8121 ( 75 n); Pd: 0.000 (s: 0.78), Pa: 0.000 (s: 0) Exon 2 8120 8098 ( 23 n); cDNA 249 270 ( 22 n); score: 0.826 MATCH C06HBa0024L21.1-7- SGN-E242274- 0.832 270 0.692 C PGS_C06HBa0024L21.1-7-_SGN-E242274- (8442 8196,8120 8098) Alignment (genomic DNA sequence = upper lines): AATTAATTCA AGGTTATCTC CTTTAA-CCC TCAAGTAGTT AAATTATTAA CATTAACCCA 8384 |||||||||| |||||||||| ||| || ||| |||||| || ||||||||| |||||| ||| AATTAATTCA AGGTTATCTC CTTCAACCCC CCAAGTAATT GAATTATTAA CATTAAACCA 60 CTAAATTTAT AATTAT-AGC AGGAATAGTC CAAAATGTCC CTTAAAACAC TTAA-AGAAA 8326 |||| || || |||||| ||| |||||||||| ||||| | || ||||||||| |||| | ||| CTAATTTCAT AATTATAAGC AGGAATAGTC CAAAACGCCC CTTAAAACAT TTAACAAAAA 120 TCCGACTCAG CCTAGGATCA CGCAGCCTGT GACGGGCCGT CGTGCCTGCG ACGGTCTGTC 8266 |||||| ||| | ||| | | ||||| |||| |||| | || |||||||||| |||||| ||| TCCGACCCAG TC-AGGGTTA CGCAGTCTGT GACGACCAGT CGTGCCTGCG ACGGTCCGTC 179 TTGCTGCTTC CGTCACAGAG TTCAGAGACT AGATTTTTAC CAAGGGTCTG TGACGGTCCG 8206 ||||||||| ||||||| || |||||||| | | | ||| || |||||| || |||| | ||| CTGCTGCTTC CGTCACAAAG TTCAGAGATT A-AATTTCAC TAAGGGTTTG TGACAGCCCG 238 TCCTGCCACT TCGTCGTGAA GTTCAGAGAG TCGATTTCAG TATCCAAATT TTAGAATTCT 8146 || |||| | TCATGCCTGT .......... .......... .......... .......... .......... 248 AAGTGTTTTG GAACGAGACC CCCACGACGG TCTGTCGTGC CCATGCCG 8098 ||||| || |||||| |||| || .......... .......... .....GACGG TCCGTCGTG- CCATTTCG 270 hqPGS_C06HBa0024L21.1-7-_SGN-E242274- (8442 8196,8120 8098) ******************************************************************************** EST sequence 43 -strand 763 n (File: SGN-E354383-) 1 AGAGAGTCGA TTTTCATATC CAAATTCAGA AATTCTAAGT ATGCTGAAAC GATGCACCTT 61 CGACGGGCCG TCGTGCCTGT GACGGTCCGT CGCAGTGCCC GTGGTCTTGG CCAGTTTTTC 121 CAGAATTAAA ATCTGCTGCT CAAAACGACT AAACAGGTCG TTACAATAGA TACCAATTTA 181 CCCATCGTTC GTCCCCGAAC GATCAAATGA AGAAAAACAA TGGCGAAAAG GAGTACCTGA 241 ATCTGTAAAC AGATGTGGGT ATTTTTCTTG CATATCTGCC TCCTTCTCCC AAGTAGCTTC 301 TTCAACCGGT CGATTCTTCC ATTGAACTTT GATGGATGCA ATTTCTCTCG ACCTCAACTT 361 GCGAACCTCT CTATCTAAAA TAGCAACTGG TTCCTCCTCA TAAGTCCAAT TCTCACCAAG 421 CGAAACTGAA TCCCAACGGA TGATGTAGTT TCCATCTCCA TGGTATCTTT TCAACATGGA 481 TACATGAAAT ACCGGATGTA CTCCGGACAG CCCTGGAGGT AAGGCTAATT CATAAGCCAC 541 CTCCCCTACT CGCTTTAGTA CCTCAAATGG TCCAATATAC CTTGGACTTA ACTTACCTCT 601 TTTACGAAAC CGCATCACCC CTTTCATTGG CGAGACTTTC AACAAGACTT GTTCGCCCTC 661 CATGAACTCT AAGTCTCTAA CCTTTCGATC TGCATATTCT TTTTGTCTAC TTTGCGCCGC 721 TAGAAGCTTT TCTTGAATAG ACTTCACTTT CTCCATCGAA TCT Predicted gene structure (within gDNA segment 9772 to 5218): Exon 1 8181 7421 ( 761 n); cDNA 1 762 ( 762 n); score: 0.861 MATCH C06HBa0024L21.1-7- SGN-E354383- 0.861 761 0.997 C PGS_C06HBa0024L21.1-7-_SGN-E354383- (8181 7421) Alignment (genomic DNA sequence = upper lines): AGAGAGTCGA TTTCAGTATC CAAATTTTAG AATTCTAAGT GTTTTGGAAC GAGACCCCCA 8122 |||||||||| ||| |||| |||||| |||||||||| | || ||| || | || AGAGAGTCGA TTTTCATATC CAAATTCAGA AATTCTAAGT ATGCTGAAAC GATGCACCTT 60 CGACGGTCTG TCGTGCCCAT GCCGGTTCAT CGTGGGATCC GTCGACTTAG CCAGTTTTTC 8062 |||||| | | ||||||| | | |||| | | || | || || | ||| | |||||||||| CGACGGGCCG TCGTGCCTGT GACGGTCCGT CGCAGTGCCC GTGGTCTTGG CCAGTTTTTC 120 CAGAAATAAA ATCTGCTGCT CAAAACGACT AAACAGGTCG TTACAATAGA TACCAATTTA 8002 ||||| |||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAGAATTAAA ATCTGCTGCT CAAAACGACT AAACAGGTCG TTACAATAGA TACCAATTTA 180 CCCATCGTTC GTCTCCGAAC GATCACAAGA AGGAAAACAA GGGCGAAAAT GAGTACCTGA 7942 |||||||||| ||| |||||| ||||| | || || ||||||| |||||||| |||||||||| CCCATCGTTC GTCCCCGAAC GATCAAATGA AGAAAAACAA TGGCGAAAAG GAGTACCTGA 240 ATCTGTAAAC AGGTGTGGGT ATCTTTCTCG CATATCAGTC TCCTTCTCCC AAGTGGACTC 7882 |||||||||| || ||||||| || ||||| | |||||| | | |||||||||| |||| | || ATCTGTAAAC AGATGTGGGT ATTTTTCTTG CATATCTGCC TCCTTCTCCC AAGTAGCTTC 300 TTCAACTGGT CGATTCTTCC ATTGAACTTT GATAGATGCA ATCTCCATTG ATCTCAACTT 7822 |||||| ||| |||||||||| |||||||||| ||| |||||| || || | | | |||||||| TTCAACCGGT CGATTCTTCC ATTGAACTTT GATGGATGCA ATTTCTCTCG ACCTCAACTT 360 GCGAATTTCT CTATTTAGAA TGGCAACAGG CTTCTCCTCA TAAGTCAAAT TCTCATCAAG 7762 ||||| ||| |||| || || | ||||| || | ||||||| |||||| ||| ||||| |||| GCGAACCTCT CTATCTAAAA TAGCAACTGG TTCCTCCTCA TAAGTCCAAT TCTCACCAAG 420 AAGAACCGAA TCCCAACGAA TGATGTAGTT TTCA-CCCCA TGGTATCTTT TCAACATAGA 7703 ||| ||| |||||||| | |||||||||| | || | ||| |||||||||| ||||||| || CGAAACTGAA TCCCAACGGA TGATGTAGTT TCCATCTCCA TGGTATCTTT TCAACATGGA 480 CACATGAAAT ACCGGATGCA CTCCTGACAG TCCTGGGGGC AAGACTAATT CATAAGCCAC 7643 ||||||||| |||||||| | |||| ||||| ||||| || ||| |||||| |||||||||| TACATGAAAT ACCGGATGTA CTCCGGACAG CCCTGGAGGT AAGGCTAATT CATAAGCCAC 540 CTCCCCTACT CGCTTAAGTA CTTTAAATGG TCCAATATAC CTTGGGCTTA GCTTACCTCT 7583 |||||||||| ||||| |||| | | |||||| |||||||||| ||||| |||| ||||||||| CTCCCCTACT CGCTTTAGTA CCTCAAATGG TCCAATATAC CTTGGACTTA ACTTACCTCT 600 TTTTCCAAAC CGCATCACCC CTTTCATGGG CGAAACCTTC AGCAAGACTT GCTCACCCTC 7523 ||| | |||| |||||||||| ||||||| || ||| || ||| | |||||||| | || ||||| TTTACGAAAC CGCATCACCC CTTTCATTGG CGAGACTTTC AACAAGACTT GTTCGCCCTC 660 CATGAACTCC AAGTCTCTAA CCTTTCGATC TGCATATTCC TTTTGCCTGC TTTGAGCCGC 7463 ||||||||| |||||||||| |||||||||| ||||||||| ||||| || | |||| ||||| CATGAACTCT AAGTCTCTAA CCTTTCGATC TGCATATTCT TTTTGTCTAC TTTGCGCCGC 720 TAAGAGCTTT TCTTGAATAG ATTTCACCTT CTCTAATGAA TC 7421 || |||||| |||||||||| | ||||| || ||| | ||| || TAGAAGCTTT TCTTGAATAG ACTTCACTTT CTCCATCGAA TC 762 hqPGS_C06HBa0024L21.1-7-_SGN-E354383- (8181 7421) ******************************************************************************** EST sequence 24 -strand 542 n (File: SGN-E252199-) 1 CGACCCAGCC TGGGATTACG CAGTCTGTGA CGGTCCGTCC TGCACGTCCG TCACAGAGTT 61 CAGAGACTAG ATTTTTACCA AGGGTCTGTG ACGGCCCATC ACGCCTGTGA CGGTCCGTCC 121 TGCCATTCCG TCACGAAGTT CAGAGAGTCG ATTTCAGTAC CCAAATTTCA GAATTCTAAG 181 TGTTTTGGAA CGAGACCCCC TCGACGGTCC GTCGTGGGAT CCGTCGTCTC AGTCAGTTTT 241 TCCAGAAATA AAATCTGTTA CTCAAAACGA CTAAACAGGT CGTTACAATA GATACCAATT 301 TACCCATCGT TCGTCCCCGA ACGATCACAA GAAGAAAAAC AAGGGCGAAA AGGAGTACCT 361 GAATCTGTAA ACAGGTATGG GTATCTTTCT CGCATATCAA CTTCCTTCTC CCAAGTGGAT 421 TCTTCAACTG GTCGATTCTT CCATTGAACT TTGATAGATG CAATCTCCCT TGACCTCAAT 481 TTGCGGACTT CTCTATCTAA AATGGCAACA GGCTCCTCCT CATAAGACAA ATTCTCATCA 541 AG Predicted gene structure (within gDNA segment 9327 to 6496): Exon 1 8218 7762 ( 457 n); cDNA 105 542 ( 438 n); score: 0.895 MATCH C06HBa0024L21.1-7- SGN-E252199- 0.895 457 0.843 C PGS_C06HBa0024L21.1-7-_SGN-E252199- (8218 7762) Alignment (genomic DNA sequence = upper lines): CTGTGACGGT CCGTCCTGCC ACTTCGTCGT GAAGTTCAGA GAGTCGATTT CAGTATCCAA 8159 |||||||||| |||||||||| | | |||| |||||||||| |||||||||| ||||| |||| CTGTGACGGT CCGTCCTGCC ATTCCGTCAC GAAGTTCAGA GAGTCGATTT CAGTACCCAA 164 ATTTTAGAAT TCTAAGTGTT TTGGAACGAG ACCCCCACGA CGGTCTGTCG TGCCCATGCC 8099 |||| ||||| |||||||||| |||||||||| |||||| ||| ||||| || | | | ATTTCAGAAT TCTAAGTGTT TTGGAACGAG ACCCCCTCGA CGGTC---CG T---C--G-- 214 GGTTCATCGT GGGATCCGTC GACTTAGCCA GTTTTTCCAG AAATAAAATC TGCTGCTCAA 8039 | |||||||||| | || || || |||||||||| |||||||||| || | ||||| ---------T GGGATCCGTC GTCTCAGTCA GTTTTTCCAG AAATAAAATC TGTTACTCAA 265 AACGACTAAA CAGGTCGTTA CAATAGATAC CAATTTACCC ATCGTTCGTC TCCGAACGAT 7979 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| AACGACTAAA CAGGTCGTTA CAATAGATAC CAATTTACCC ATCGTTCGTC CCCGAACGAT 325 CACAAGAAGG AAAACAAGGG CGAAAATGAG TACCTGAATC TGTAAACAGG TGTGGGTATC 7919 ||||||||| |||||||||| |||||| ||| |||||||||| |||||||||| | |||||||| CACAAGAAGA AAAACAAGGG CGAAAAGGAG TACCTGAATC TGTAAACAGG TATGGGTATC 385 TTTCTCGCAT ATCAGTCTCC TTCTCCCAAG TGGACTCTTC AACTGGTCGA TTCTTCCATT 7859 |||||||||| |||| ||| |||||||||| |||| ||||| |||||||||| |||||||||| TTTCTCGCAT ATCAACTTCC TTCTCCCAAG TGGATTCTTC AACTGGTCGA TTCTTCCATT 445 GAACTTTGAT AGATGCAATC TCCATTGATC TCAACTTGCG AATTTCTCTA TTTAGAATGG 7799 |||||||||| |||||||||| ||| |||| | |||| ||||| | ||||||| | || ||||| GAACTTTGAT AGATGCAATC TCCCTTGACC TCAATTTGCG GACTTCTCTA TCTAAAATGG 505 CAACAGGCTT CTCCTCATAA GTCAAATTCT CATCAAG 7762 ||||||||| |||||||||| | |||||||| ||||||| CAACAGGCTC CTCCTCATAA GACAAATTCT CATCAAG 542 hqPGS_C06HBa0024L21.1-7-_SGN-E252199- (8218 7762) ******************************************************************************** EST sequence 46 -strand 565 n (File: SGN-E275667-) 1 GAGACATCTG TGACGGACCG TCGTGCCTGT GACGGTCCGT CGTGGGTTCC GTTGTTTCAG 61 CCAATTTTCC AGAAATAAAA TCTGCTGCTC AAAACGACTA AACAGGTCGT TACAGTAATG 121 AAAAAAAAGA AGAAAGAGAA TAAAGAAAGA AGAAAGAAAG AGAAAAGGGA AGAAGAAGAA 181 AGAGAAAAAG AAAAAGAAAA AGAAAATGAA ATTGATAAAA TAAGAAAAAT AAAAATAAAA 241 ATTAATACGT GGCAGATTAT AATTGATGCG TAATTGAACT TCTTTTTTTG CAAGTGAGGA 301 TGGTTAAAAA ATGAGATATT TACAACACTT TAAAATTATT TAAGGGAGTA ATAAAATGTC 361 CGCTAAGTTA AGATATCTTT TTAATAATTT AAAATAACTT TAATGGTATT TTTATATCTT 421 TTCTCAAATA TTAAACTTTT TTAGAATACA CTCAATTCGC CTCAATGTCT TTTAAAATTT 481 TGACATTATG AATATCGACA TCACATGGTG CATATGCAAA AGTAATCACA TTATTATTGA 541 ATAGATCTAA TCTTTCATTG AGCGC Predicted gene structure (within gDNA segment 9316 to 1107): Exon 1 8131 8013 ( 119 n); cDNA 1 118 ( 118 n); score: 0.824 Intron 1 8012 4733 (3280 n); Pd: 0.000 (s: 0.96), Pa: 0.988 (s: 0.70) Exon 2 4732 4635 ( 98 n); cDNA 119 208 ( 90 n); score: 0.684 Intron 2 4634 2680 (1955 n); Pd: 0.000 (s: 0.66), Pa: 0.522 (s: 0.58) Exon 3 2679 2596 ( 84 n); cDNA 209 288 ( 80 n); score: 0.554 Intron 3 2595 2544 ( 52 n); Pd: 0.900 (s: 0.50), Pa: 0.942 (s: 0) Exon 4 2543 2527 ( 17 n); cDNA 289 304 ( 16 n); score: 0.529 Intron 4 2526 2125 ( 402 n); Pd: 0.000 (s: 0), Pa: 0.079 (s: 0) Exon 5 2124 2090 ( 35 n); cDNA 305 338 ( 34 n); score: 0.600 Intron 5 2089 2005 ( 85 n); Pd: 0.727 (s: 0), Pa: 0.936 (s: 0) Exon 6 2004 1986 ( 19 n); cDNA 339 358 ( 20 n); score: 0.605 MATCH C06HBa0024L21.1-7- SGN-E275667- 0.703 372 0.658 C PGS_C06HBa0024L21.1-7-_SGN-E275667- (8131 8013,4732 4635,2679 2596,2543 2527,2124 2090,2004 1986) Alignment (genomic DNA sequence = upper lines): GAGACCCCCA CGACGGTCTG TCGTGCCCAT GCCGGTTCAT CGTGGGATCC GTCGACTTAG 8072 ||||| | ||||| | | ||||||| | | |||| | | |||||| ||| || | | || GAGACATCTG TGACGGACCG TCGTGCCTGT GACGGTCCGT CGTGGGTTCC GTTGTTTCAG 60 CCAGTTTTTC CAGAAATAAA ATCTGCTGCT CAAAACGACT AAACAGGTCG TTACAATAGA 8012 ||| ||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||| || CCA-ATTTTC CAGAAATAAA ATCTGCTGCT CAAAACGACT AAACAGGTCG TTACAGTAA. 118 TACCAATTTA CCCATCGTTC GTCTCCGAAC GATCACAAGA AGGAAAACAA GGGCGAAAAT 7952 .......... .......... .......... .......... .......... .......... 118 GAGTACCTGA ATCTGTAAAC AGGTGTGGGT ATCTTTCTCG CATATCAGTC TCCTTCTCCC 7892 .......... .......... .......... .......... .......... .......... 118 AAGTGGACTC TTCAACTGGT CGATTCTTCC ATTGAACTTT GATAGATGCA ATCTCCATTG 7832 .......... .......... .......... .......... .......... .......... 118 ATCTCAACTT GCGAATTTCT CTATTTAGAA TGGCAACAGG CTTCTCCTCA TAAGTCAAAT 7772 .......... .......... .......... .......... .......... .......... 118 TCTCATCAAG AAGAACCGAA TCCCAACGAA TGATGTAGTT TTCACCCCAT GGTATCTTTT 7712 .......... .......... .......... .......... .......... .......... 118 CAACATAGAC ACATGAAATA CCGGATGCAC TCCTGACAGT CCTGGGGGCA AGACTAATTC 7652 .......... .......... .......... .......... .......... .......... 118 ATAAGCCACC TCCCCTACTC GCTTAAGTAC TTTAAATGGT CCAATATACC TTGGGCTTAG 7592 .......... .......... .......... .......... .......... .......... 118 CTTACCTCTT TTTCCAAACC GCATCACCCC TTTCATGGGC GAAACCTTCA GCAAGACTTG 7532 .......... .......... .......... .......... .......... .......... 118 CTCACCCTCC ATGAACTCCA AGTCTCTAAC CTTTCGATCT GCATATTCCT TTTGCCTGCT 7472 .......... .......... .......... .......... .......... .......... 118 TTGAGCCGCT AAGAGCTTTT CTTGAATAGA TTTCACCTTC TCTAATGAAT CCCTCAAAAG 7412 .......... .......... .......... .......... .......... .......... 118 ATCAGTACCC CAAGGTCTAA CCTCAAATGC ATCAAACCAA CCAATGGGAG ACCTACATCT 7352 .......... .......... .......... .......... .......... .......... 118 CCTCCCATAC AATGCTTCGA AAGGAGCCAT ATCAATACTT GAGTGATAGC TATTATTGTA 7292 .......... .......... .......... .......... .......... .......... 118 TGAAAACTCC GCTAAGGGTA AGAATTTATC GCAATGACCC CCAAATTCTA TCACACATGC 7232 .......... .......... .......... .......... .......... .......... 118 ACGAAGCATA TCTTCCAACA CCTGAATTGT TCGTTCCGAC TGACCATCGG TCTGAGGGTG 7172 .......... .......... .......... .......... .......... .......... 118 AAATGCAGTA CTAAGGTCCA ACCTAGTACC TAATTCAGCA TGCAATGTTC TCCAAAACTT 7112 .......... .......... .......... .......... .......... .......... 118 AGAAGTAAAT TGCATACCTC TATCTAATAT GATGGAAAGT GGAACTCCAT GCAATCGAAC 7052 .......... .......... .......... .......... .......... .......... 118 AATTTCTGAG ATGTAAATTT TGGCTAACTT CTCTGCATTA TAAGTCACCT TGATCGGAAT 6992 .......... .......... .......... .......... .......... .......... 118 GAAATGAGCA GACTTAGTTA ATCTGTCCAC AATTACCCAA ATAGAGTCAA ACTTCCCCAA 6932 .......... .......... .......... .......... .......... .......... 118 TGTCGTTGGA AGACCAACCA CGAAGCCCAT TGCAATTCCT CCGGGCCTCT GGTGTTCATA 6872 .......... .......... .......... .......... .......... .......... 118 CTTTACTTAT TGACAATTTG GACATTTGGC AACAAAATCA ACAATGTCGC GCTTCATCCT 6812 .......... .......... .......... .......... .......... .......... 118 ACTCCACCAA AAGTGTTGCT TTAGGTCACG ATACATCTTG GTTGCACCAG GATGTATAGA 6752 .......... .......... .......... .......... .......... .......... 118 ATATCAGGAA CTATGAGCCT CTGTAAGAAT AGTGTGAACC AAATCATTAA CACGGGGCAC 6692 .......... .......... .......... .......... .......... .......... 118 ACATACCCTT CCCTTAATTC TCAAAACACC TTCCTCATCC ATTATTGCTT CTTTAGCCTC 6632 .......... .......... .......... .......... .......... .......... 118 TCCTCACAAC ACCATATCCC GAATTTGGCT TAGTTTCTCA TCATCAAACT GTTTCCCCTT 6572 .......... .......... .......... .......... .......... .......... 118 GATCTTTTCA AGAAAAGAAA ATCTCGCCTC CACATTGGCC AAAAATCCTC CCTTCTTATT 6512 .......... .......... .......... .......... .......... .......... 118 TACTTCTAAC CTCATAAGGT CGTTAGCCAG AGTCTGAACC TCTCTAGCCA ATGGGCGTCT 6452 .......... .......... .......... .......... .......... .......... 118 AGAAACTTAT AAGTGAGCTA GACTTCCCAT GCTCCCTGCT TTTCTACTTA AGGCGTCTGC 6392 .......... .......... .......... .......... .......... .......... 118 CACAACATTA GCCTTTCCTG GGTGATACAA GATGGTAACA TCATAATCCT TCAGTAGTTT 6332 .......... .......... .......... .......... .......... .......... 118 CATCCATCTC CAAAGACAAT CGTGGTTGGT CTTCCAAAGA CATTGGGGAA GTTTGACTCT 6272 .......... .......... .......... .......... .......... .......... 118 ATTTGGGTAA TTGTGGACAG ATTAACTAAG TCTGCTCATT TCATTCCGAT CAAGGTGACT 6212 .......... .......... .......... .......... .......... .......... 118 TATAATGCAG AGAAGTTAGC CAAAATTTAC ATCTCAGAAA TTGTTCGATT GCATGGAGTT 6152 .......... .......... .......... .......... .......... .......... 118 CCACTTTCCA TCATATTAGA TAGAGGTACG CAATTTACTT CTAAGTTTTG GAGAACATTG 6092 .......... .......... .......... .......... .......... .......... 118 CATGCTGATT AGGTACTAGG TTGGACCTTA GTACTGCATT TCACCCTCAG ACCGATGGTC 6032 .......... .......... .......... .......... .......... .......... 118 AGTCGGAACG AACAATTCAG GTGTTGGAAG ATATGCTTCG TGCATGTGTG ATAGAATTTG 5972 .......... .......... .......... .......... .......... .......... 118 GGGGTCATTG CGATAAATTC TTACCCTTAG CGGAGTTTTC ATACAATAAT AGCTATCACT 5912 .......... .......... .......... .......... .......... .......... 118 CAAGTATTGA TATGGCTCCT TTCGAAGCAT TGTATGGGAG GAGATGTAGG TCTCCCATTG 5852 .......... .......... .......... .......... .......... .......... 118 GTTGGTTTGA TGCATTTGAG GTTAGACCTT GGGGTATTGA TCTTTTGAGG GATTCATTAG 5792 .......... .......... .......... .......... .......... .......... 118 AGAAGGTGAA ATCTATTCAA GAAAAGCTCT TAGCGGCTCA AAGCAGGCAA AAGGAATATG 5732 .......... .......... .......... .......... .......... .......... 118 CAGATCGAAA GGTTAGAGAC TTGGAGTTCA TGGAGGGTGA GCAAGTCTTG CTGAAGGTTT 5672 .......... .......... .......... .......... .......... .......... 118 CGCCCATGAA AGGGGTGATG CGGTTTGGAA AAAGAGGTAA GCTAAGCCCA AGGTATATTG 5612 .......... .......... .......... .......... .......... .......... 118 GACCATTTAA AGTACTTAAG CGAGTAGGGG AGGTGGCTTA TGAATTAGTC TTGCCCCCAG 5552 .......... .......... .......... .......... .......... .......... 118 GACTGTCAGG AGTGCATCCG GTATTTCATG TGTCTATGTT GAAAAGATAC CATGGGGTGA 5492 .......... .......... .......... .......... .......... .......... 118 AAACTACATC ATTCGTTGGG ATTCGGTTCT TCTTGATGAG AATTTGACTT ATGAGGAGAA 5432 .......... .......... .......... .......... .......... .......... 118 GCCTGTTGCC ATTCTAAATA GAGAAATTCG CAAGTTGAGA TCAATGGAGA TTGCATCTAT 5372 .......... .......... .......... .......... .......... .......... 118 CAAAGTTCAA TGGAAGAATC GACCAGTTGA ATAGTCCACT TGGGAGAAGG AGGCTGATAT 5312 .......... .......... .......... .......... .......... .......... 118 GCGAGAAAGA TACCCACACC TGTTTACAGA TTCAGGTACT CATTTTCGCC CTTGTATCCT 5252 .......... .......... .......... .......... .......... .......... 118 TCTTATGATC GTTCGGGGAC GAACGATGGG TAAATTGGTA TCTATTGTAA CGACCTGTTT 5192 .......... .......... .......... .......... .......... .......... 118 AGTCGTTTTG AGCAGCAGAT TTTATTTCTG GAAAAACAGG CTGAGACGAC GGAACCTACG 5132 .......... .......... .......... .......... .......... .......... 118 ACGGACCGTC ATGAGTACGA CGGACCGTCG AGGGGTCTCG TTTCAAAACA CTTAGAAATT 5072 .......... .......... .......... .......... .......... .......... 118 TTGAAATTGG GTACTGAAAA TCGACTCTCT GAACTTCGTA ACGGAATGGC AGGACGGACC 5012 .......... .......... .......... .......... .......... .......... 118 GTCACGGGCG TGACGGACCG TCACAGACTC TTTGGTGGAA ATTGAGTCTC TGAACCTTGC 4952 .......... .......... .......... .......... .......... .......... 118 GATGACCTGC AGGACGGGCC GTCACAGGTT GCGTAATCCC AGTCTGGGTC GGATTTCTGT 4892 .......... .......... .......... .......... .......... .......... 118 TAAGTAATTT AAGGGGTGTT TTGGACTATT CCAGCTTTAT TTATAAAGTT AGTGGGTTTA 4832 .......... .......... .......... .......... .......... .......... 118 TGTTAATAAG TCTAATTACT TGGGTGTTAA AAGAGGTAAC CTTGAGTAAA TTAGTGGGTT 4772 .......... .......... .......... .......... .......... .......... 118 ATTATTGCCA TCTTTTATTC TTAATTATAT GCTAATTAGG GTAAAAGAAG GAGGGTTTGA 4712 | |||| ||| || || .......... .......... .......... .........T GAAAAAAAAG AAGAAAGAGA 139 ATAAGAAAAA GAAAAGAACA GAAAGAGAGA GAAGGAGAAT CGATAGAGAG AGATGAACGA 4652 |||| | ||| | ||||| | |||||||| | |||| ||| ||| || ||| || || ATAA-AGAAA G--AAGAA-A GAAAGAGA-A -AAGG-GAAG AAGAAGAAAG AGA-AAAAGA 191 AGAGGAAAAA CACAAGGCTT TGGGAAATTC TTGCTTGATC ACTAGTCTTC GGTGGAGGTA 4592 | | |||||| | || | AAAAGAAAAA GAAAATG... .......... .......... .......... .......... 208 GGTTATGGTT TCTCTTACGA TATTCGTAGT AAACTCTTAA TACCGAATGA TATGTATTGA 4532 .......... .......... .......... .......... .......... .......... 208 TAATATTGTA AACCCTGCTA TGTGCTTACT TGTATGCTTG CATGAATGTA ATTATATAAT 4472 .......... .......... .......... .......... .......... .......... 208 TGTGATTATA TAAGCATGAT GAAGTTATTG AAACCCAAAT CTTGAAAAAT CCTAATCTCT 4412 .......... .......... .......... .......... .......... .......... 208 TTGTTAATAA TGAGGCCTTG GTATAAAAGA AGGCGTGATG AACTAAAACT ATGAGATTGA 4352 .......... .......... .......... .......... .......... .......... 208 TGATGTCTTG GTAAGAAAGA AGGCTTGATG AATTGATAGA AGGAGATTAG GGGATCGGGT 4292 .......... .......... .......... .......... .......... .......... 208 GCCACGTTCC GGTACCAGGA TAGTATATGA GGATCGGAGT GTCACGTTCC GACACCAGGA 4232 .......... .......... .......... .......... .......... .......... 208 TAGAATATGG ATCGGGTGCC ACGTTTCGGT ACCAAGATAG AATATGAGGA TCGGAGTGTC 4172 .......... .......... .......... .......... .......... .......... 208 ACGTTCCGAC ACTAGGATAG AATATGGATC GGGTGCCACA TTTCGGTACC AGGATAGTAT 4112 .......... .......... .......... .......... .......... .......... 208 ATGAGGATCG GAGTGTCACG TTCCGACACC AGGATAGAAT ATGGATCGGG TGCCACGTTC 4052 .......... .......... .......... .......... .......... .......... 208 CGGTACCAGG ATAGTATATG AGGATCGGAG TGTCACGTTC CGACACCAGA ATAGAATATG 3992 .......... .......... .......... .......... .......... .......... 208 GATCGGGTGC CACGTTCGGT ACCAGGATAG TATATGAGGA TCGGGTGCCA CGTTCCGGTA 3932 .......... .......... .......... .......... .......... .......... 208 CCAGGATAGT ATATGAGGAG CGGAGTGTCA CGTACCGACA CGAGAGGAAT AAAGATAATG 3872 .......... .......... .......... .......... .......... .......... 208 AATCTTGAAA GATGTTAATA TACTCAATCT AATGAACCTA AATCCCAAAT GAGTATGATG 3812 .......... .......... .......... .......... .......... .......... 208 AGGAGGCGTG AGTCCTCATT GATGAGCTTG GTGTTGTAAC CAAGGGTTAT GGTAATTGTA 3752 .......... .......... .......... .......... .......... .......... 208 AATGCTACAT GTTGAGTATC ATAGTTGATT TTATGATATT ACTTGGTATA TACTGTTTTC 3692 .......... .......... .......... .......... .......... .......... 208 TATTTTGAGT TGGCCGATGA TACCTACTCA GTACTTGTGT TTGTACCGAC CCCCTACTTT 3632 .......... .......... .......... .......... .......... .......... 208 TATGTTTTCT TTTTTGTTAT TTGTGGAGTG CAGCAAACGT GTCATCGTCT TCAACTCAAC 3572 .......... .......... .......... .......... .......... .......... 208 CGCAACTCTA GCCAGTCTCC ATTATTTCGG ATATCAGGGT GAGCTAATGC TTCTAGCTTG 3512 .......... .......... .......... .......... .......... .......... 208 GACTGGATCT TCCTCTTCAT GTCTTGATGC CTTGAAGTTC CGGCATGGAC TAGCTTTTAC 3452 .......... .......... .......... .......... .......... .......... 208 TTGTTTTAGC TTTTTAGAAT ACTCTTAGTT TAGTACTTTG ATCATAGATG TTCTTGTGAT 3392 .......... .......... .......... .......... .......... .......... 208 GATGACTTCC AGATTTTGGG GATAATAATA GTTATTGATT TTATTAATGA GTTTAAGTCT 3332 .......... .......... .......... .......... .......... .......... 208 TCCGCATTAC TTTCTGTTGA TATTATATTG AAATGTTAAG GTTTAGATTG GTTGGTTCAC 3272 .......... .......... .......... .......... .......... .......... 208 TCACACAGGA GGGTAAGTGT GGGTGCCAGT CGCAGCCCGA TTTGGGTCGT GACAAATACA 3212 .......... .......... .......... .......... .......... .......... 208 TAATATGATC AAACAACATT CATACGCAGA ACACACATTG ATTCATACCT GTTGTTGTGC 3152 .......... .......... .......... .......... .......... .......... 208 ATCTGTTGTT GGTTGACCTA TTGACAATCT AATCTCTTCA ATTATCAGCT TAGTTGAGTT 3092 .......... .......... .......... .......... .......... .......... 208 ATCAACGTAA GTCTTGATTT CAACCATGTG CTTGTCAACC TTATCAATGT ATAAAAATAT 3032 .......... .......... .......... .......... .......... .......... 208 GTTAAAATAA TAAAATAAAA TATAGAATAG TTTTATTAGT TAATTAAAAC GTGATTTGAA 2972 .......... .......... .......... .......... .......... .......... 208 CTAACATTAA CTTTGTGATT TTTCAACTCC GCGTAACTGT TCATTAAACA GTAATAAATT 2912 .......... .......... .......... .......... .......... .......... 208 TTGATATGTA TAATGTAATA TCTAAAAACT ATTATAAGCA CAAATTTTTA TTTATACCAT 2852 .......... .......... .......... .......... .......... .......... 208 TGCAATTTCA GCTTTCAACT CTACATAATT TTTTTAAAAA TCAACGCCAT GTTTTTCTGA 2792 .......... .......... .......... .......... .......... .......... 208 GGTTTCTCGC TCTTCAGAAT CTTGGTGACT GGAAGACTTG ATTCAAAATG GTTTCATCCG 2732 .......... .......... .......... .......... .......... .......... 208 TGACATATAA CTCTTTTTGA GTAAAAATCA TATTTTTGAA TTTATGTTGC AGAAATGAAA 2672 |||| | .......... .......... .......... .......... .......... ..AAATTGAT 216 AATATGAGAA TGTGTAATAA TTTATAATTA CTTTAATAAC ATTCAATAAA GAGATTACTT 2612 || || |||| ||| || | | ||||| | | | | || || || | | | AAAATAAGAA -AAATAA-AA ATAAAAATTA -ATACGTGGC AGATTAT-AA TTGA-TGCGT 271 GATTG-ATGT ATTTTTAATA TCATTTTTTT TAAATCATCA AAATAAATAA CGTCACTTGT 2553 |||| | | ||||| AATTGAACTT CTTTTTT... .......... .......... .......... .......... 288 TGTCTCTAGT TCAGGATACG CGGTGTGCGA TCTGAAGCAT GGATAGCAAT TGTGTTGTCA 2493 | || | | | | || .........T GCAAGTGAGG ATG-GT.... .......... .......... .......... 304 AATGGATGAC AAAACTTATA AAACCATACC TGCAAGGCTA TATGAAACTG ATTGAACTTG 2433 .......... .......... .......... .......... .......... .......... 304 AATGACGAAG GATTTTTTTG CAACTTACGA CTGCACGCTT TAAGTGTTAA TTTAAAACCT 2373 .......... .......... .......... .......... .......... .......... 304 CATTCCCTAA TAAAAATATG ACACACTGGC CAGACTTAAC TAAATCGAAA TATAATTTGG 2313 .......... .......... .......... .......... .......... .......... 304 GAATGGTTGT TTTTGAAGGG TCTGAAGCAG TCAAAAATGA CAAAATGAAG TACAGAATTC 2253 .......... .......... .......... .......... .......... .......... 304 TGAATTTTAA AAGGTCGTCC TCTTCTCAAA AGTTTTTCAA TTTAAACTTG TGGTAAAAAT 2193 .......... .......... .......... .......... .......... .......... 304 CTGACTTGGG ACTTTGTCCA TATCCTCGAA TTTTTCTTAT ATAAGTTTAT TTGAAATAGA 2133 .......... .......... .......... .......... .......... .......... 304 CTGATCAGAA ACATAATCAG AAATTGATCC GAATTTCAGA TTGGTTACAT CAACAAATTC 2073 | | | ||| || | ||| | | ||| | | || ........TA A-AAAATGAG ATATTTACAA CACTTTAAAA TTA....... .......... 338 TTTTAATCCA AAGTGTAACT CTGTACCATT TATGTTGATA ACGAACATTT CATCCCTGTC 2013 .......... .......... .......... .......... .......... .......... 338 ATTTTCAGTT TCAAGAAG-A AAAATATG 1986 || | | | || | | || ||| ........TT TAAGGGAGTA ATAAAATG 358 hqPGS_C06HBa0024L21.1-7-_SGN-E275667- (8131 8013) ******************************************************************************** EST sequence 33 -strand 515 n (File: SGN-E242359-) 1 AGTATGTATT AAGCAATATC ATAAAATTAA CTAATATCCT TAGCATGCAG CATTTGCAAT 61 TACCATAACC CTTGGTTGCA TCACCAAGCA CATCAATGAG GACTCACACC TCCTCATCAT 121 ACTTATTTGG GAATTTAGTT CATTGGATTG CATATATTAA CATATTTCAA GATTCATCAT 181 ATTTATTCCC CTCGTGTCCT TACGTGACAC TCCACTCCTC AATATACTAT CCTGGCACCG 241 GAACGTGGCA CCCGATCCAT ATTCTATCCT GGTGTCAGAA CGTGACACCC GATCCATATT 301 CTATCCTGGT GTCGGAACGT GACACCCGAT CCATATTCTA TCCTGGTACC GGAACGTGGC 361 ACCCGATCCA TATTCTATCC TGGTGTCGGA ACGTGACACC CGATCCATAT TCTATCCTGG 421 TACCGGAACG TGGCACCCGA TCCCCTAATC TCACCACTTT CGTTCATCAA GCCTTCTTTT 481 ATACCAAGGC ATCATTATTA ACAAAGTAGA TTAGG Predicted gene structure (within gDNA segment 10470 to 6923): Exon 1 9356 9076 ( 281 n); cDNA 1 281 ( 281 n); score: 0.827 Intron 1 9075 9036 ( 40 n); Pd: 0.291 (s: 0.90), Pa: 0.000 (s: 0.83) Exon 2 9035 8798 ( 238 n); cDNA 282 515 ( 234 n); score: 0.905 MATCH C06HBa0024L21.1-7- SGN-E242359- 0.863 519 1.008 C PGS_C06HBa0024L21.1-7-_SGN-E242359- (9356 9076,9035 8798) Alignment (genomic DNA sequence = upper lines): AGTATATATC AGATAATATC ATAAAATAAA CTACAATACT CAACATGCGG CATTTACAAT 9297 ||||| ||| | |||||| ||||||| || ||| || || | ||||| | ||||| |||| AGTATGTATT AAGCAATATC ATAAAATTAA CTAATATCCT TAGCATGCAG CATTTGCAAT 60 TACCATAACC CTTAGTCACA ACACCAAGCA CATCAATGAG GACTCACGCC TCCCCATCTT 9237 |||||||||| ||| || || ||||||||| |||||||||| ||||||| || ||| |||| | TACCATAACC CTTGGTTGCA TCACCAAGCA CATCAATGAG GACTCACACC TCCTCATCAT 120 ACTTATTTGG GAATTAGGTT CATTAAATTG AGTATATTAA CATATTTCAA GATTCATTCG 9177 |||||||||| ||||| ||| |||| |||| |||||||| |||||||||| ||||||| ACTTATTTGG GAATTTAGTT CATTGGATTG CATATATTAA CATATTTCAA GATTCATCAT 180 CTTTACTAAT CCTGGTGCCG AAACGTGACA CTCCGATCCT C-ATATACTA TCCTGGTACC 9118 |||| | ||| ||| | |||||||| |||| |||| | |||||||| |||||| ||| ATTTA-TTCC CCTCGTGTCC TTACGTGACA CTCCACTCCT CAATATACTA TCCTGGCACC 239 GGAACGTGGC ACCCGATCCA TATACTATCC TGGTGCCGAA ACGTGACACT CCGATCCTCA 9058 |||||||||| |||||||||| ||| |||||| ||||| | | || GGAACGTGGC ACCCGATCCA TATTCTATCC TGGTGTCAGA AC........ .......... 281 TATACTATCT TGGTACCGGA ATGTGGCATC CGATCCATAT ACTATCCTGG TGTCGGAACG 8998 ||| || | |||||||||| ||||||||| |||||||||| .......... .......... ..GTGACACC CGATCCATAT TCTATCCTGG TGTCGGAACG 319 TGAC-TCTGA TCCTCATATA CTATCCTGGT ACCGGAACGT GGCACCCGAT CCATATACTA 8939 |||| | || | | ||||| |||||||||| |||||||||| |||||||||| |||||| ||| TGACACCCGA T-C-CATATT CTATCCTGGT ACCGGAACGT GGCACCCGAT CCATATTCTA 377 TCCTGGTGTC GAAACGTGAC ACTCCGATCC TCATATACTA TCCTAGTACC GGAACGTGGC 8879 |||||||||| | |||||||| || ||||| | ||||| ||| |||| ||||| |||||||||| TCCTGGTGTC GGAACGTGAC AC-CCGAT-C -CATATTCTA TCCTGGTACC GGAACGTGGC 434 ACCCGATCCC CTAATCTCAC TACTTTCATT CATCAAACCT TCTTTTATAC CAGGGCATCA 8819 |||||||||| |||||||||| |||||| || |||||| ||| |||||||||| || ||||||| ACCCGATCCC CTAATCTCAC CACTTTCGTT CATCAAGCCT TCTTTTATAC CAAGGCATCA 494 TCATTAACAA AGTAGATTAG G 8798 | |||||||| |||||||||| | TTATTAACAA AGTAGATTAG G 515 hqPGS_C06HBa0024L21.1-7-_SGN-E242359- (9356 9076,9035 8798) ******************************************************************************** EST sequence 106 +strand 730 n (File: SGN-E546506+) 1 TTTTTTTTTT TTTTTTTTAA TAAAAACAAT TCAATACTAT TATTATTATC CCCAAAATCT 61 GGAAGTCATC ATCACAAGAA CATCTATCTC AAATTACTTA ACTAGGAATG TCTAAGAACA 121 AAATAACTAA AAAGCTAGTC CATGCCGGAA ATTCAAGGCA TCAAGACTTG AAGAAGAAGA 181 CCCAGTCCAA GCTAGACGCA TTAGCTCACC CTGAATTTTC CGATGAAGTG AAGACTGGCT 241 AGATCTACTG TTGAGTTGAA GTTGACGGAA CGTTTGCTGC ATTACACAAA TAACAAAGAG 301 GAAAACATGA AAGTAGGGGT CAGTACAACC ACACGTACTG AGTAGATATC ATCGGCCAAC 361 TCAAAATAGG GAACAGTATA TATCAATAAT AATGTAAATC AACTACAATA CTCAACATGT 421 AGCAATAACA CCATGAATTC ATCAATAACT ACAACCGAGT TCACACATGA GGACTCAAGC 481 CTCAATACCA TACTCATTTG GGAATTAAGT TCATTAGATT GAGTATATTC ATTATCTTTC 541 AAGATTCATT ATCTTTCTTC CTCTTGTGTC GGTACGTGAC ACTCCGATCC TCTATTTCTA 601 TCCTGGTGCC GGAACGTGGC ACTCCGATCC TCATTCTATC CTGGTACCGG AACGTGGCAC 661 CCGATCCATT TTCTATCCTG GTGTCGGAAC GTGACACTCC GATCCTCATA TTCTATCCTG 721 GTACCGGAAC Predicted gene structure (within gDNA segment 12446 to 8103): Exon 1 9691 9106 ( 586 n); cDNA 43 622 ( 580 n); score: 0.802 Intron 1 9105 8994 ( 112 n); Pd: 0.000 (s: 0.88), Pa: 0.000 (s: 0.92) Exon 2 8993 8884 ( 110 n); cDNA 623 730 ( 108 n); score: 0.927 PPA cDNA 18 1 MATCH C06HBa0024L21.1-7- SGN-E546506+ 0.822 696 0.953 C PGS_C06HBa0024L21.1-7-_SGN-E546506+ (9691 9106,8993 8884) Alignment (genomic DNA sequence = upper lines): TTATTATTCC CAAAATCTGG AAGTCATCAT CACAAGAACA TCTATCCTCA AATCACTAAT 9632 ||||||| || |||||||||| |||||||||| |||||||||| ||||| |||| ||| ||| | TTATTATCCC CAAAATCTGG AAGTCATCAT CACAAGAACA TCTAT-CTCA AATTACTTA- 100 TCTAAGAGTA TCTAGAAAGC TAGAATAAAT AGAAAGCTAG TCCTTGCCGG AACTTCAAGG 9572 ||| || | |||| | | | | ||||| | | |||||||| ||| |||||| || ||||||| ACTAGGAATG TCTA-AGAAC -AAAATAACT AAAAAGCTAG TCCATGCCGG AAATTCAAGG 158 CATCAAGACA TGAAGAAGAA GATCCAGTCC AAGCTAGAAG CGTTAGCTCA CCCTGAA--A 9514 ||||||||| |||||||||| || ||||||| |||||||| | | |||||||| ||||||| CATCAAGACT TGAAGAAGAA GACCCAGTCC AAGCTAGACG CATTAGCTCA CCCTGAATTT 218 TCCGGTGTAA TGAAGACTGG CTAGAGTTGC GATTGAGTTG AAGGCGACAG TACGTTTACT 9454 |||| || | |||||||||| ||||| | | |||||||| ||| ||| | |||||| || TCCGATGAAG TGAAGACTGG CTAGATCTAC TGTTGAGTTG AAGTTGACGG AACGTTTGCT 278 GTACTCCACA AATAACAAAG AAAGAAACAT ACAAGTAGGG GTCAGTACAA AACACAGGTA 9394 | | | |||| |||||||||| | |||||| |||||||| |||||||| | | |||| ||| GCATTACACA AATAACAAAG AGGAAAACAT GAAAGTAGGG GTCAGTAC-A ACCACACGTA 337 CTGAGTAGAT ATCATCGGCC AACTCAAAAT AGAAAACAGT ATATATCAGA TAATATCATA 9334 |||||||||| |||||||||| |||||||||| || |||||| |||||||| | ||||| | CTGAGTAGAT ATCATCGGCC AACTCAAAAT AGGGAACAGT ATATATCA-A TAATAATGT- 395 AAATAAACTA CAATACTCAA CATGCGGCAT TTACAATTAC CATAACCCTT AGTCACAAC- 9275 |||| ||||| |||||||||| |||| ||| | || | | | | | | | | || || AAATCAACTA CAATACTCAA CATGTAGCAA TAAC-ACCAT GA-ATTCATC AATAACTACA 453 ACCAAGCACA TCAATGAGGA CTCACGCCTC CCCATCTTAC TTATTTGGGA ATTAGGTTCA 9215 ||| || || ||||||| |||| ||||| | | ||| | |||||||| |||| ||||| ACCGAGTTCA CACATGAGGA CTCAAGCCTC AATACCATAC TCATTTGGGA ATTAAGTTCA 513 TTAAATTGAG TATATT-AAC ATATTTCAAG ATTCATTCGC TTTACTAATC CTGGTGCCGA 9156 ||| |||||| |||||| | || ||||||| ||||||| | ||| || || ||| || TTAGATTGAG TATATTCATT ATCTTTCAAG ATTCATTATC TTT-CTTCCT CTTGTGTCGG 572 AACGTGACAC TCCGATCCTC ATATACTATC CTGGTACCGG AACGTGGCAC CCGATCCATA 9096 ||||||||| |||||||||| | ||||| ||||| |||| |||||||||| TACGTGACAC TCCGATCCTC TATTTCTATC CTGGTGCCGG AACGTGGCAC .......... 622 TACTATCCTG GTGCCGAAAC GTGACACTCC GATCCTCATA TACTATCTTG GTACCGGAAT 9036 .......... .......... .......... .......... .......... .......... 622 GTGGCATCCG ATCCATATAC TATCCTGGTG TCGGAACGTG ACTCTGATCC TCATATACTA 8976 || ||||| |||| | ||| .......... .......... .......... .......... ..TCCGATCC TCAT-T-CTA 638 TCCTGGTACC GGAACGTGGC ACCCGATCCA TATACTATCC TGGTGTCGAA ACGTGACACT 8916 |||||||||| |||||||||| |||||||||| | | |||||| |||||||| | |||||||||| TCCTGGTACC GGAACGTGGC ACCCGATCCA TTTTCTATCC TGGTGTCGGA ACGTGACACT 698 CCGATCCTCA TATACTATCC TAGTACCGGA AC 8884 |||||||||| ||| |||||| | |||||||| || CCGATCCTCA TATTCTATCC TGGTACCGGA AC 730 hqPGS_C06HBa0024L21.1-7-_SGN-E546506+ (9691 9106,8993 8884) ******************************************************************************** EST sequence 55 -strand 725 n (File: SGN-E546548-) 1 GGTACCGGAA CGTGGCACCC GATCCATATT CTATCCTGGT GTCGGAACGT GACACTCCGA 61 TCCTCATATT CATTCTATCC TGGTACCGGA ACGTGGCACC CGATCCCCTA ATCCATCAAG 121 CCTTCTTTTA CACTAAGGCA TCATCATTCT CATTATATAA TTTATCAAGC CTTCTTTCAT 181 ACTAAGGCAT CATCATTCTC ATTATATAAT ATATCAAGCG AATTAGGGTT CTTTCAAGAT 241 TTGGGATTCA ATTGCTTCAT CATGCTTTGT TAATTCATCG CAATTTCATA ATCATAATCA 301 TGCAAGCATA CAACTTAAGC ACATAGCAGG GTTTACAATA CTATCAACAC ATAATATTCA 361 CTATTAAGAG TTCACTACGA ATATCGTAAC ATAAACCATA ACCTACCTCC ACCGAAGAAT 421 TGAATCAACA AGCTATCTTC TCAAAATCCT TGCTATCCTC TTCGTTTCTC TCTCTCTACT 481 CGTTCGTTTC TCCTCTCTTT CTGTTCTTTT CTTTTGTTTT GTTTTATTCA AACCCTCCTT 541 CTTTTTACCC TAATTAAAAG TATAATTAAG TGTAAAGGAG GACAATAAAA CCCACTAATT 601 AACTTAAGGT TACCTCTTTT AACCCCCAAG TAATTAGACC TATTAATATT AACCCTCAAT 661 CTTTATAATT AAGGAAAGAA TAGTCCAAAA CGACCCCTAA AACGTGTAGA GGAATCCTAT 721 TTTGC Predicted gene structure (within gDNA segment 9733 to 1895): Exon 1 9123 9053 ( 71 n); cDNA 1 71 ( 71 n); score: 0.944 Intron 1 9052 8982 ( 71 n); Pd: 0.000 (s: 0.92), Pa: 0.000 (s: 0) Exon 2 8981 8947 ( 35 n); cDNA 72 106 ( 35 n); score: 0.971 Intron 2 8946 8917 ( 30 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.33) ?? Exon 3 8916 8315 ( 602 n); cDNA 107 725 ( 619 n); score: 0.652 MATCH C06HBa0024L21.1-7- SGN-E546548- 0.683 708 0.977 C PGS_C06HBa0024L21.1-7-_SGN-E546548- (9123 9053,8981 8947,8916 8315) Alignment (genomic DNA sequence = upper lines): GGTACCGGAA CGTGGCACCC GATCCATATA CTATCCTGGT GCCGAAACGT GACACTCCGA 9064 |||||||||| |||||||||| ||||||||| |||||||||| | || ||||| |||||||||| GGTACCGGAA CGTGGCACCC GATCCATATT CTATCCTGGT GTCGGAACGT GACACTCCGA 60 TCCTCATATA CTATCTTGGT ACCGGAATGT GGCATCCGAT CCATATACTA TCCTGGTGTC 9004 ||||||||| | TCCTCATATT C......... .......... .......... .......... .......... 71 GGAACGTGAC TCTGATCCTC ATATACTATC CTGGTACCGG AACGTGGCAC CCGATCCATA 8944 || ||||| |||||||||| |||||||||| ||||||| .......... .......... ..ATTCTATC CTGGTACCGG AACGTGGCAC CCGATCC... 106 TACTATCCTG GTGTCGAAAC GTGACACTCC GATCC-TCAT --ATACTATC CTAGTACCGG 8887 | |||| ||| | || | | || | .......... .......... .......CCT AATCCATCAA GCCTTCTTTT ACACTAAGGC 139 AACGTGGCAC CCGATCCCCT AATCTCACTA -CTTTCATTC AT-C-AAACC TTCTTTTATA 8830 | | | | | || | ||| | | | | ||| ||| || | || | || | | ATCATCATTC TC-ATTATAT AATTTATCAA GCCTTCTTTC ATACTAAGGC ATCATCATTC 198 CCAGGGCATC ATCATTAACA AAGTAGATTA GGGTTTCTTC AAGATTTAGG ATTCAATAGC 8770 || || || | || | ||| |||| ||||| ||| ||||||| || ||||||| || TCATTATATA AT-A-TATC- AAGCGAATTA GGGTTCTTTC AAGATTTGGG ATTCAATTGC 255 TCCATCATGC -TTATT--TT -ATCACAATT ATATAATCAC ATTCATGCAA GCATACAA-T 8715 | |||||||| || || || ||| ||||| ||||||| | |||||||| |||||||| | TTCATCATGC TTTGTTAATT CATCGCAATT TCATAATCAT AATCATGCAA GCATACAACT 315 TAAGCATATG GAAGGGTTTA CAACACTACC CAATACATAT CATTCGCTAT TAAAAGTTTA 8655 |||||| || | |||||||| ||| |||| ||| ||||| |||| |||| ||| |||| | TAAGCACATA GCAGGGTTTA CAATACTA-T CAACACATAA TATTCACTAT TAAGAGTTCA 374 CTATGAATAG CAT-A-A-AA ACCATAACCT ATCTCACACC GAAGATTAGT GATCAAGCAA 8598 ||| ||||| | | | | || |||||||||| | ||| |||| ||||| | | ||||| ||| CTACGAATAT CGTAACATAA ACCATAACCT ACCTC-CACC GAAGAATTG- AATCAA-CAA 431 AC-AAATTCC CCAAAGCTTT GTTTTCCTCT TCGTTTCTC- CTCTCT-CTC GATCG-TTCT 8542 | | ||| | ||| | || | | |||||| ||||||||| |||||| ||| | ||| |||| GCTATCTTCT CAAAATCCTT GCTATCCTCT TCGTTTCTCT CTCTCTACTC GTTCGTTTCT 491 TCTCCCTCTC T-TTGTTCT- TTCTATTTT- TCTTATTC-A ACCCTCTTTC -TTTTGCCCT 8487 ||| || || | || || | || | |||| | |||||| | |||||| ||| |||| |||| CCTCTCTTTC TGTTCTTTTC TTTTGTTTTG TTTTATTCAA ACCCTCCTTC TTTTTACCCT 551 AATTAGCA-T ATAATTAAGT ATAAAAGATG ATGAATTAAC CCTTTAATTA ATTCAAGGTT 8428 ||||| | | |||||||||| |||| || | | | ||| || |||||| | | |||||| AATTAAAAGT ATAATTAAGT GTAAAGGAGG ACAATAAAAC CCACTAATTA ACTTAAGGTT 611 ATCTCCTTTA ACCCTCAAGT AGTTA-AATT ATTAACATTA ACCCACTAAA TTTATAATTA 8369 | ||| |||| |||| ||||| | ||| | | ||||| |||| |||| | | |||||||||| ACCTCTTTTA ACCCCCAAGT AATTAGACCT ATTAATATTA ACCCTCAATC TTTATAATTA 671 TAGCAGGAAT AGTCCAAAAT GTCCCTTAAA ACACTTAAAG AAATCCGACT CAGC 8315 | | |||| ||||||||| | ||| |||| || || || ||||| | | || AGGAAAGAAT AGTCCAAAAC GACCCCTAAA ACGTGTAGAG GAATCCTATT TTGC 725 hqPGS_C06HBa0024L21.1-7-_SGN-E546548- (9123 9053,8981 8947) ******************************************************************************** EST sequence 49 -strand 481 n (File: SGN-E246710-) 1 AGTCCAAGCT AGAAGCATTA GCTCACCCTG AATTTCCGAT GTAGTAAGAC TGGCTTGAAT 61 TACTGTTGAG TTGAACACGA TGGCACGTTT GCTGCACTCC ACAAATAAAC AAGAAGAGAA 121 CATAAAAGTA GGGGTCAGTA CAAAACACGG GTACTGAGTA GATATCATCG GCCAACTCAA 181 AATAGAAATC AATATATATA CCAAGTAATA TCATAAAATC AACTATGATA CTCAACATGT 241 AGCAACAACA AATACTATAT CATTAACAAT TACCGTCAAG TTCACACATG AGGACTCAAG 301 CCTCAATACC ATACTCATTT GGGAATCATG TTCATTAGAT TGAGTATATT AACATCTTTC 361 AAGATTCATT ATCTTTATTT CTCTTGTGTC GGTACGTGAC ACTCCGCTCC CTCAATATTC 421 ATTAATCCTC TTGTGTCGGT ACGTGACACT CCGATCCCCT AAATCTATAT GTCGGTTTGT 481 G Predicted gene structure (within gDNA segment 11281 to 5829): Exon 1 9546 9142 ( 405 n); cDNA 1 406 ( 406 n); score: 0.794 MATCH C06HBa0024L21.1-7- SGN-E246710- 0.794 405 0.842 C PGS_C06HBa0024L21.1-7-_SGN-E246710- (9546 9142) Alignment (genomic DNA sequence = upper lines): AGTCCAAGCT AGAAGCGTTA GCTCACCCTG AA-ATCCGGT GTAATGAAGA CTGGCTAGAG 9488 |||||||||| |||||| ||| |||||||||| || |||| | ||| | |||| |||||| || AGTCCAAGCT AGAAGCATTA GCTCACCCTG AATTTCCGAT GTAGT-AAGA CTGGCTTGAA 59 TTGCGATTGA GTTGAAGGCG ACAGTACGTT TACTGTACTC CACAAATAAC AAAGAAAGAA 9428 || | |||| |||||| || | | ||||| | ||| |||| ||||||||| ||||| | TTACTGTTGA GTTGAACACG ATGGCACGTT TGCTGCACTC CACAAATAAA CAAGAAGAGA 119 ACATACAAGT AGGGGTCAGT ACAAAACACA GGTACTGAGT AGATATCATC GGCCAACTCA 9368 ||||| |||| |||||||||| ||||||||| |||||||||| |||||||||| |||||||||| ACATAAAAGT AGGGGTCAGT ACAAAACACG GGTACTGAGT AGATATCATC GGCCAACTCA 179 AAATAGAAAA CAGTATATAT --CAGATAAT ATCATAAAAT AAACTACAAT ACTCAACATG 9310 ||||||||| || ||||||| || |||| |||||||||| ||||| || |||||||||| AAATAGAAAT CAATATATAT ACCAAGTAAT ATCATAAAAT CAACTATGAT ACTCAACATG 239 CGGCATTTAC AATTACCATA ACCCTTAGTC ACAACACCAA GCACATCAAT GAGGACTCAC 9250 ||| || || ||| ||| | | | | | ||| | || || ||||||||| TAGCAACAAC AAATACTATA TCATTAACAA TTACCGTCAA GTTCACACAT GAGGACTCAA 299 GCCTCCCCAT CTTACTTATT TGGGAATTAG GTTCATTAAA TTGAGTATAT TAACATATTT 9190 ||||| | | |||| ||| ||||||| | |||||||| | |||||||||| |||||| ||| GCCTCAATAC CATACTCATT TGGGAATCAT GTTCATTAGA TTGAGTATAT TAACATCTTT 359 CAAGATTCAT TCGCTTTACT AATCCTGGTG CCGAAACGTG ACACTCCG 9142 |||||||||| | ||||| | | || ||| || ||||| |||||||| CAAGATTCAT TATCTTTATT TCT-CTTGTG TCGGTACGTG ACACTCCG 406 hqPGS_C06HBa0024L21.1-7-_SGN-E246710- (9546 9142) ******************************************************************************** EST sequence 56 -strand 236 n (File: SGN-E209683-) 1 CACAAATAAC AAGAAGATAA ACATAAAAGT AGGGGTCAGT ACAAACCACG GGTACTGAGT 61 AGATATCATC GGCCAACTCA AAATAGGGAA CAGTATGTAT TAAGCAATAT CATAAAATCA 121 ACTAATATCC TTAACATGCA GCATTTATAG TTACCATAAC CCTTGGTTAC AACACCAAGC 181 ACATCAATGA GGACTCACAC CTCCTCATCA TACTCATTTG GGAATTTAGT TCATTA Predicted gene structure (within gDNA segment 10291 to 8270): Exon 1 9447 9212 ( 236 n); cDNA 1 236 ( 236 n); score: 0.873 MATCH C06HBa0024L21.1-7- SGN-E209683- 0.873 236 1.000 C PGS_C06HBa0024L21.1-7-_SGN-E209683- (9447 9212) Alignment (genomic DNA sequence = upper lines): CACAAATAAC AAAGAAAGAA ACATACAAGT AGGGGTCAGT ACAAAACACA GGTACTGAGT 9388 |||||||||| || | | || ||||| |||| |||||||||| ||||| ||| |||||||||| CACAAATAAC AAGAAGATAA ACATAAAAGT AGGGGTCAGT ACAAACCACG GGTACTGAGT 60 AGATATCATC GGCCAACTCA AAATAGAAAA CAGTATATAT CAGATAATAT CATAAAATAA 9328 |||||||||| |||||||||| |||||| || |||||| ||| | ||||| |||||||| | AGATATCATC GGCCAACTCA AAATAGGGAA CAGTATGTAT TAAGCAATAT CATAAAATCA 120 ACTACAATAC TCAACATGCG GCATTTACAA TTACCATAAC CCTTAGTCAC AACACCAAGC 9268 |||| || | | ||||||| ||||||| | |||||||||| |||| || || |||||||||| ACTAATATCC TTAACATGCA GCATTTATAG TTACCATAAC CCTTGGTTAC AACACCAAGC 180 ACATCAATGA GGACTCACGC CTCCCCATCT TACTTATTTG GGAATTAGGT TCATTA 9212 |||||||||| |||||||| | |||| |||| |||| ||||| |||||| || |||||| ACATCAATGA GGACTCACAC CTCCTCATCA TACTCATTTG GGAATTTAGT TCATTA 236 hqPGS_C06HBa0024L21.1-7-_SGN-E209683- (9447 9212) ******************************************************************************** EST sequence 28 -strand 729 n (File: SGN-E351546-) 1 AGTCGTTGCT CTAGTTCTAC CCATCTGGCA AGAGAGTGAG NATGGTCAGA TACCAATTCG 61 TATCGCTTAG ATACCAATTG ACTCGAAGTA GTAGCACGAA AGAAAGAATG AAAGAGTGAA 121 GTTTTCCTAA AGTCTTATAG CCTCTCAAGG AAAAGTAAAA GCGTCCCCCT ACCGTTCCTT 181 AAGACTCTAC TAGACTTGTT CTTGTGTGAT GAGACCAACG AACCTAATGC TCTGATACCA 241 AGTTTTGTCA CGACCCAAAT CCGGGCCGCC ACTGGCACCC ACACTTACCC TCCTATGTGA 301 GCGAACCAAC CAATCTAAAC CTTAACATTT CAATGTAATA GCAACAGAAA GTAATGCGGA 361 AGACTTAAAC TCATTAATAA AATCAATAAC TACTATTATT AAACATCTAT TATTCCCAAA 421 ACCTGGAAGT CATCATCACA AGAACATCTA CTTTAAACTA CTAATTCTAA GAGTTTCTAA 481 GAAGCTAAAA AATTACATAA GAAGCTAGTC CATGCCGGAA GTTCAAGGCA TCAAGACATG 541 AAGGAGAAGA TCCAGTCCAA GCTAGAAGCG TTAGCTCACC CTGAAGATCC GGTGTGACGA 601 AGACTGGCTT GAGTTACTGT TGAGTCGAAG ATGACGGCAC GTTTGCTGCA CTCCACAAAT 661 ACCAAGAAGA AAAACATAAA AGTAGGGGTC AGTACAAAAC ACGGCTACTG AGTAGATATC 721 ATCGGCCAA Predicted gene structure (within gDNA segment 12446 to 8772): Exon 1 9857 9372 ( 486 n); cDNA 246 729 ( 484 n); score: 0.829 MATCH C06HBa0024L21.1-7- SGN-E351546- 0.829 486 0.667 C PGS_C06HBa0024L21.1-7-_SGN-E351546- (9857 9372) Alignment (genomic DNA sequence = upper lines): TGTCACGACC CAAAGC-GGG TCGCGAGTGG CACCCACACT TATCCCCCTA TGTGAGCGAA 9799 |||||||||| |||| | ||| ||| | ||| |||||||||| || || |||| |||||||||| TGTCACGACC CAAATCCGGG CCGCCACTGG CACCCACACT TACCCTCCTA TGTGAGCGAA 305 CCAACCAATC TAAACCCCAA CATTTCAA-C CATAATTAAC ATAATATAAT GCGGAAGACT 9740 |||||||||| |||||| || |||||||| | | ||| | || |||| |||||||||| CCAACCAATC TAAACCTTAA CATTTCAATG TAATAGCAAC AGAAAGTAAT GCGGAAGACT 365 TAAACTCATT AATGAAAATC GATTAAATAA CTTCTAAAAA CGCATTACTT ATTATTCCCA 9680 |||||||||| ||| |||||| | ||| | | || || || || | | | |||||||||| TAAACTCATT AAT-AAAATC -AATAACT-A CTATTATTAA -ACA-T-C-T ATTATTCCCA 418 AAATCTGGAA GTCATCATCA CAAGAACATC TATCCTCAAA TCACTAATTC TAAGAGTATC 9620 ||| |||||| |||||||||| |||||||||| || | | ||| |||||||| ||||||| || AAACCTGGAA GTCATCATCA CAAGAACATC TA-CTTTAAA CTACTAATTC TAAGAGTTTC 477 TAGAAAGCT- -AGAA-TAAA TAGAAAGCTA GTCCTTGCCG GAACTTCAAG GCATCAAGAC 9563 || ||||| | || || | || |||||| |||| ||||| ||| |||||| |||||||||| TAAGAAGCTA AAAAATTACA TAAGAAGCTA GTCCATGCCG GAAGTTCAAG GCATCAAGAC 537 ATGAAGAAGA AGATCCAGTC CAAGCTAGAA GCGTTAGCTC ACCCTGAA-A TCCGGTGTAA 9504 |||||| ||| |||||||||| |||||||||| |||||||||| |||||||| | |||||||| | ATGAAGGAGA AGATCCAGTC CAAGCTAGAA GCGTTAGCTC ACCCTGAAGA TCCGGTGTGA 597 TGAAGACTGG CTAGAGTTGC GATTGAGTTG AAGGCGACAG TACGTTTACT GTACTCCACA 9444 ||||||||| || ||||| | |||||| | ||| ||| | |||||| || | |||||||| CGAAGACTGG CTTGAGTTAC TGTTGAGTCG AAGATGACGG CACGTTTGCT GCACTCCACA 657 AATAACAAAG AAAGAAACAT ACAAGTAGGG GTCAGTACAA AACACAGGTA CTGAGTAGAT 9384 |||| ||| | | |||||| | |||||||| |||||||||| ||||| | || |||||||||| AATACCAAGA AGAAAAACAT AAAAGTAGGG GTCAGTACAA AACACGGCTA CTGAGTAGAT 717 ATCATCGGCC AA 9372 |||||||||| || ATCATCGGCC AA 729 hqPGS_C06HBa0024L21.1-7-_SGN-E351546- (9857 9372) ******************************************************************************** EST sequence 50 -strand 580 n (File: SGN-E356206-) 1 GAAAAGTAAA AGCGTCCCCN TACCGTCCCT TAAGACTCTA CTAGACTTGT TCTTGTGTGA 61 TGAGACCAAC GACCCTAATG CTCTGATACC AAGTTTTGTC ACGACCCAAA TCCGGGCCGC 121 CACTGGCACC CACACTTACC CTCCTATGTG AGCGAACCAA CCAATCTAAA CCTTAACATT 181 TCAATGTAAT AGCAACAGAA AGTAATGCGG AAGACTTAAA CTCATTAATA AAATCAATAA 241 CTACTATTAT TAAACATCTA TTATTCCCAA AACCTGGAAG TCATCATCAC AAGAACATCT 301 ACTTTAAACT ACTAATTCTA AGAGTTTCTA AGAAGCTAAA AAATTACATA AGAAGCTAGT 361 CCATGCCGGA AGTTCAAGGC ATCAAGACAT GAAGGAGAAG ATCCAGTCCA AGCTAGAAGC 421 GTTAGCTCAC CCTGAAGATC CGGTGTGACG AAGACTGGCT TGAGTTACTG TTGAGTCGAA 481 GATGACGGCA CGTTTGCTGC ACTCCACAAA TAACAAGAAG AAAAACATAA AAGTAGGGGT 541 CAGTACAAAA CACGGCTACT GAGTAGATAT CATCGGCCAA Predicted gene structure (within gDNA segment 11842 to 8772): Exon 1 9857 9372 ( 486 n); cDNA 97 580 ( 484 n); score: 0.831 MATCH C06HBa0024L21.1-7- SGN-E356206- 0.831 486 0.838 C PGS_C06HBa0024L21.1-7-_SGN-E356206- (9857 9372) Alignment (genomic DNA sequence = upper lines): TGTCACGACC CAAAG-CGGG TCGCGAGTGG CACCCACACT TATCCCCCTA TGTGAGCGAA 9799 |||||||||| |||| |||| ||| | ||| |||||||||| || || |||| |||||||||| TGTCACGACC CAAATCCGGG CCGCCACTGG CACCCACACT TACCCTCCTA TGTGAGCGAA 156 CCAACCAATC TAAACCCCAA CATTTCAA-C CATAATTAAC ATAATATAAT GCGGAAGACT 9740 |||||||||| |||||| || |||||||| | | ||| | || |||| |||||||||| CCAACCAATC TAAACCTTAA CATTTCAATG TAATAGCAAC AGAAAGTAAT GCGGAAGACT 216 TAAACTCATT AATGAAAATC GATTAAATAA CTTCTAAAAA CGCATTACTT ATTATTCCCA 9680 |||||||||| ||| |||||| | ||| | | || || || || | | | |||||||||| TAAACTCATT AAT-AAAATC -AATAACT-A CTATTATTAA -ACA-T-C-T ATTATTCCCA 269 AAATCTGGAA GTCATCATCA CAAGAACATC TATCCTCAAA TCACTAATTC TAAGAGTATC 9620 ||| |||||| |||||||||| |||||||||| || | | ||| |||||||| ||||||| || AAACCTGGAA GTCATCATCA CAAGAACATC TA-CTTTAAA CTACTAATTC TAAGAGTTTC 328 TAGAAAGCT- -AGAA-TAAA TAGAAAGCTA GTCCTTGCCG GAACTTCAAG GCATCAAGAC 9563 || ||||| | || || | || |||||| |||| ||||| ||| |||||| |||||||||| TAAGAAGCTA AAAAATTACA TAAGAAGCTA GTCCATGCCG GAAGTTCAAG GCATCAAGAC 388 ATGAAGAAGA AGATCCAGTC CAAGCTAGAA GCGTTAGCTC ACCCTGAA-A TCCGGTGTAA 9504 |||||| ||| |||||||||| |||||||||| |||||||||| |||||||| | |||||||| | ATGAAGGAGA AGATCCAGTC CAAGCTAGAA GCGTTAGCTC ACCCTGAAGA TCCGGTGTGA 448 TGAAGACTGG CTAGAGTTGC GATTGAGTTG AAGGCGACAG TACGTTTACT GTACTCCACA 9444 ||||||||| || ||||| | |||||| | ||| ||| | |||||| || | |||||||| CGAAGACTGG CTTGAGTTAC TGTTGAGTCG AAGATGACGG CACGTTTGCT GCACTCCACA 508 AATAACAAAG AAAGAAACAT ACAAGTAGGG GTCAGTACAA AACACAGGTA CTGAGTAGAT 9384 |||||||| | | |||||| | |||||||| |||||||||| ||||| | || |||||||||| AATAACAAGA AGAAAAACAT AAAAGTAGGG GTCAGTACAA AACACGGCTA CTGAGTAGAT 568 ATCATCGGCC AA 9372 |||||||||| || ATCATCGGCC AA 580 hqPGS_C06HBa0024L21.1-7-_SGN-E356206- (9857 9372) ******************************************************************************** EST sequence 51 -strand 655 n (File: SGN-E356696-) 1 CAATTGGACT CAAGTAGTAG CACGAAAGAA AGAATGAAAG AGTGAAGTTT TCCTAAAGTC 61 TTATAGCCTC TCAAGGAAAA GTAAAAGCGT CCCCCTACCG TTCCTTAAGA CTCTACTAGA 121 CTTGTTCTTG TGTGATGAGA CCAACGAACC TAATGCTCTG ATACCAAGTT TTGTCACGAC 181 CCAAATCCGG GCCGCCACTG GCACCCACAC TTACCCTCNT ATGTGAGCGA ACCAACCAAT 241 CTAAACCTTA ACATTTCAAT GTAATAGCAA CAGAAAGTAA TGCGGAAGAC TTAAACTCAT 301 TAATAAAATC AATAACTACT ATTATTAAAC ATCTATTATT CCCAAAACCT GGAAGTCATC 361 ATCACAAGAA CATCTACTTT AAACTACTAA TTCTAAGAGT TTCTAAGAAG CTAAAAAATT 421 ACATAAGAAG CTAGTCCATG CCGGAAGTTC AAGGCATCAA GACATGAAGG AGAAGATCCA 481 GTCCAAGCTA GAAGCGTTAG CTCACCCTGA AGATCCGGTG TGACGAAGAC TGGCTTGAGT 541 TACTGTTGAG TCGAAGATGA CGGCACGTTT GCTGCACTCC ACAAATAACA AGAAGAAAAA 601 CATAAAAGTA GGGGTCAGTA CAAAACACGG CTACTGAGTA GATATCATCG GCCAA Predicted gene structure (within gDNA segment 12446 to 8772): Exon 1 9857 9372 ( 486 n); cDNA 172 655 ( 484 n); score: 0.829 MATCH C06HBa0024L21.1-7- SGN-E356696- 0.829 486 0.742 C PGS_C06HBa0024L21.1-7-_SGN-E356696- (9857 9372) Alignment (genomic DNA sequence = upper lines): TGTCACGACC CAAAGC-GGG TCGCGAGTGG CACCCACACT TATCCCCCTA TGTGAGCGAA 9799 |||||||||| |||| | ||| ||| | ||| |||||||||| || || | || |||||||||| TGTCACGACC CAAATCCGGG CCGCCACTGG CACCCACACT TACCCTCNTA TGTGAGCGAA 231 CCAACCAATC TAAACCCCAA CATTTCAA-C CATAATTAAC ATAATATAAT GCGGAAGACT 9740 |||||||||| |||||| || |||||||| | | ||| | || |||| |||||||||| CCAACCAATC TAAACCTTAA CATTTCAATG TAATAGCAAC AGAAAGTAAT GCGGAAGACT 291 TAAACTCATT AATGAAAATC GATTAAATAA CTTCTAAAAA CGCATTACTT ATTATTCCCA 9680 |||||||||| ||| |||||| | ||| | | || || || || | | | |||||||||| TAAACTCATT AAT-AAAATC -AATAACT-A CTATTATTAA -ACA-T-C-T ATTATTCCCA 344 AAATCTGGAA GTCATCATCA CAAGAACATC TATCCTCAAA TCACTAATTC TAAGAGTATC 9620 ||| |||||| |||||||||| |||||||||| || | | ||| |||||||| ||||||| || AAACCTGGAA GTCATCATCA CAAGAACATC TA-CTTTAAA CTACTAATTC TAAGAGTTTC 403 TAGAAAGCT- -AGAA-TAAA TAGAAAGCTA GTCCTTGCCG GAACTTCAAG GCATCAAGAC 9563 || ||||| | || || | || |||||| |||| ||||| ||| |||||| |||||||||| TAAGAAGCTA AAAAATTACA TAAGAAGCTA GTCCATGCCG GAAGTTCAAG GCATCAAGAC 463 ATGAAGAAGA AGATCCAGTC CAAGCTAGAA GCGTTAGCTC ACCCTGAA-A TCCGGTGTAA 9504 |||||| ||| |||||||||| |||||||||| |||||||||| |||||||| | |||||||| | ATGAAGGAGA AGATCCAGTC CAAGCTAGAA GCGTTAGCTC ACCCTGAAGA TCCGGTGTGA 523 TGAAGACTGG CTAGAGTTGC GATTGAGTTG AAGGCGACAG TACGTTTACT GTACTCCACA 9444 ||||||||| || ||||| | |||||| | ||| ||| | |||||| || | |||||||| CGAAGACTGG CTTGAGTTAC TGTTGAGTCG AAGATGACGG CACGTTTGCT GCACTCCACA 583 AATAACAAAG AAAGAAACAT ACAAGTAGGG GTCAGTACAA AACACAGGTA CTGAGTAGAT 9384 |||||||| | | |||||| | |||||||| |||||||||| ||||| | || |||||||||| AATAACAAGA AGAAAAACAT AAAAGTAGGG GTCAGTACAA AACACGGCTA CTGAGTAGAT 643 ATCATCGGCC AA 9372 |||||||||| || ATCATCGGCC AA 655 hqPGS_C06HBa0024L21.1-7-_SGN-E356696- (9857 9372) ******************************************************************************** EST sequence 62 +strand 434 n (File: SGN-E222578+) 1 TTTTTTTTTT TTTTTTTTTA ATAAAAACCA ATTCAATAAC TATCAATATT CAACATCTAT 61 TATTCCCAAA ACCTGGAAGT CATCATCACA AGAACATCTA CTTTAAACTA CTAATTCTAA 121 GAGTTTCTAA AAGCTAAAAA TACATAAGAA GCTAGTCCAT GCCGGAGGTT CAAGGCATCA 181 AGACATGAAG GAGAAGATCC AGTCCAAGCT AGACGCGTTA GCTCACCCTG AAGATCCGGT 241 GTGACGAAGA CTGGCTTGAG TTACTGTTGA GTCGAAGATG ACGGCACGTT TGCTGCACTC 301 CACAACTTTC TAGATGGGGA CTTTCTTCAA GGCTTCGAGA TGGAAACTTG CTTGCAGAGC 361 TTCGAGTGTT ACCAGCTTCA AGATGGAGTT TCAGTGATGA GGCTTGCTAG TCTCGAGTTT 421 TTTTTTTTTT TTTT Predicted gene structure (within gDNA segment 11858 to 6885): Exon 1 10354 10337 ( 18 n); cDNA 1 18 ( 18 n); score: 0.833 Intron 1 10336 9731 ( 606 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.72) Exon 2 9730 9443 ( 288 n); cDNA 19 305 ( 287 n); score: 0.830 MATCH C06HBa0024L21.1-7- SGN-E222578+ 0.830 306 0.705 C PGS_C06HBa0024L21.1-7-_SGN-E222578+ (10354 10337,9730 9443) Alignment (genomic DNA sequence = upper lines): TTTTATTTAT TATTTTTTGT TTTTAACTAG TTCTTTACAA AAAAAAATTA CGTACGTCAC 10295 |||| ||| | | |||||| TTTTTTTTTT TTTTTTTT.. .......... .......... .......... .......... 18 TGAATATAGT ATTGAGCATA TATTTATTCA TGCATCATAT GTACATGTAT ATGCATTGTA 10235 .......... .......... .......... .......... .......... .......... 18 TTCATGTATC AATGCACTAT TATATATTAT GTATTTAATA TATTTTCAAA CGATATACAT 10175 .......... .......... .......... .......... .......... .......... 18 TCATCACATT GTTTTTGATT TATCATATAT CATGAGACAA ATATAATTTT TTGATACATT 10115 .......... .......... .......... .......... .......... .......... 18 AATATTAAGT GAAACATACA ATTCATATAA GCTAGTAACA AATGAATAAT AACTATATAA 10055 .......... .......... .......... .......... .......... .......... 18 ATTAATACAA GTGAAACTAA TAAATATAAG TGAAACTAGA GTGAATTAAT ACAAGCATGA 9995 .......... .......... .......... .......... .......... .......... 18 ATGAATATAA TCTCATGTAA TCTTTTTGTA TTTTTGTATA CACCTATATA TATGTCTCTT 9935 .......... .......... .......... .......... .......... .......... 18 GAAGCGTGTA CTTGATTGAT TTATTGCGCT TGTCTTTTTT AAAAAAAAAG TTCAAAAATT 9875 .......... .......... .......... .......... .......... .......... 18 ATGTCGAACA CCTTAAGTGT CACGACCCAA AGCGGGTCGC GAGTGGCACC CACACTTATC 9815 .......... .......... .......... .......... .......... .......... 18 CCCCTATGTG AGCGAACCAA CCAATCTAAA CCCCAACATT TCAACCATAA TTAACATAAT 9755 .......... .......... .......... .......... .......... .......... 18 ATAATGCGGA AGACTTAAAC TCATTAATGA AAATCGATTA AATAACTTCT AAAAACGCAT 9695 |||| | ||| | ||| |||||| | | || | || .......... .......... ....TAATAA AAACCAATTC AATAAC-TAT CAATATTCAA 53 TACTTATTAT TCCCAAAATC TGGAAGTCAT CATCACAAGA ACATCTATCC TCAAATCACT 9635 | |||||| |||||||| | |||||||||| |||||||||| ||||||| | | ||| ||| CATCTATTAT TCCCAAAACC TGGAAGTCAT CATCACAAGA ACATCTA-CT TTAAACTACT 112 AATTCTAAGA GTATCTAGAA AGCT-AGAAT AAATAGAAAG CTAGTCCTTG CCGGAACTTC 9576 |||||||||| || |||| || |||| | ||| | ||| ||| ||||||| || ||||| ||| AATTCTAAGA GTTTCTA-AA AGCTAAAAAT ACATAAGAAG CTAGTCCATG CCGGAGGTTC 171 AAGGCATCAA GACATGAAGA AGAAGATCCA GTCCAAGCTA GAAGCGTTAG CTCACCCTGA 9516 |||||||||| ||||||||| |||||||||| |||||||||| || ||||||| |||||||||| AAGGCATCAA GACATGAAGG AGAAGATCCA GTCCAAGCTA GACGCGTTAG CTCACCCTGA 231 A-ATCCGGTG TAATGAAGAC TGGCTAGAGT TGCGATTGAG TTGAAGGCGA CAGTACGTTT 9457 | |||||||| | | |||||| ||||| |||| | | ||||| | |||| || | | |||||| AGATCCGGTG TGACGAAGAC TGGCTTGAGT TACTGTTGAG TCGAAGATGA CGGCACGTTT 291 ACTGTACTCC ACAA 9443 ||| ||||| |||| GCTGCACTCC ACAA 305 hqPGS_C06HBa0024L21.1-7-_SGN-E222578+ (9730 9443) ******************************************************************************** EST sequence 61 +strand 679 n (File: SGN-E370357+) 1 TTTTTTTTTT CTTACAATTA TATTATGAAT TCGATAATCT TTAATGTCAC GACCCAAATC 61 GAGCCGCAAG TGGCACCCAC ACTTACCCTC CTATGTGAGC GAACCAACCA ATACAAAATC 121 CAACATTTCA ATATAATGAC GGAATATAAT GCGGAAGACT TAAACTCATT AATGAAAATC 181 AATTAAATAA CTTCTAAAAA CTCAACAACT ATTATTATCC CCAAAATCTG GAAGTCATCA 241 TCACAAGAAC ATCTATCCTC AAATTACTAA TTCTAAGAGT ATCTAGAAAG CTAGAATAAC 301 TAAAAAGCTA GTCCATGCCG GAACTTCAAG GCATCAAGAC ATGAAGAAGA AGATCCAGTC 361 CAAGCTAGAA GCGTTAGCTC ACACTGAAAT CCGGTATAAT GAAGACTGGC TAGAGTTGCG 421 GTTGAGTTGA AGACGACGGT ACGTTTGCTT TATTCGAGTG TCAATTAATC ATTCGGCTGT 481 CACCCAAATA TTATTGATTG ATTACACCTC TGCCATTTGT AAAATTTTTC AAATTTGCCT 541 ACGGATGCAG AATTTTCCTC GAATTTCTGA TGTGTTTTCT TGTAAATAGT GGCCATTTGT 601 GTAAGTAAAT GCCCATTTCT CCTCCTACAA AGTCCAATTC CATTTTTCCC CCAATCCACC 661 ATGGCAACAC CACCTCCAA Predicted gene structure (within gDNA segment 11777 to 6283): Exon 1 10342 10326 ( 17 n); cDNA 1 17 ( 17 n); score: 0.765 Intron 1 10325 9885 ( 441 n); Pd: 0.000 (s: 0), Pa: 0.510 (s: 0.70) Exon 2 9884 9454 ( 431 n); cDNA 18 449 ( 432 n); score: 0.883 MATCH C06HBa0024L21.1-7- SGN-E370357+ 0.883 448 0.660 C PGS_C06HBa0024L21.1-7-_SGN-E370357+ (10342 10326,9884 9454) Alignment (genomic DNA sequence = upper lines): TTTTTTGTTT TTAACTAGTT CTTTACAAAA AAAAATTACG TACGTCACTG AATATAGTAT 10283 |||||| ||| | || | TTTTTTTTTT CTTACAA... .......... .......... .......... .......... 17 TGAGCATATA TTTATTCATG CATCATATGT ACATGTATAT GCATTGTATT CATGTATCAA 10223 .......... .......... .......... .......... .......... .......... 17 TGCACTATTA TATATTATGT ATTTAATATA TTTTCAAACG ATATACATTC ATCACATTGT 10163 .......... .......... .......... .......... .......... .......... 17 TTTTGATTTA TCATATATCA TGAGACAAAT ATAATTTTTT GATACATTAA TATTAAGTGA 10103 .......... .......... .......... .......... .......... .......... 17 AACATACAAT TCATATAAGC TAGTAACAAA TGAATAATAA CTATATAAAT TAATACAAGT 10043 .......... .......... .......... .......... .......... .......... 17 GAAACTAATA AATATAAGTG AAACTAGAGT GAATTAATAC AAGCATGAAT GAATATAATC 9983 .......... .......... .......... .......... .......... .......... 17 TCATGTAATC TTTTTGTATT TTTGTATACA CCTATATATA TGTCTCTTGA AGCGTGTACT 9923 .......... .......... .......... .......... .......... .......... 17 TGATTGATTT ATTGCGCTTG TCTTTTTTAA AAAAAAAGTT CAAAAATTAT GTCGAACACC 9863 || | || | |||| | | .......... .......... .......... ........TT ATATTATGAA TTCGATAATC 39 TTAAGTGTCA CGACCCAAAG CGGGTCGCGA GTGGCACCCA CACTTATCCC CCTATGTGAG 9803 || | ||||| ||||||||| || | ||| | |||||||||| |||||| || |||||||||| TTTAATGTCA CGACCCAAAT CGAGCCGCAA GTGGCACCCA CACTTACCCT CCTATGTGAG 99 CGAACCAACC AATCTAAACC CCAACATTTC AACCATAATT AACATAATAT AATGCGGAAG 9743 |||||||||| ||| ||| |||||||||| || |||| | || ||||| |||||||||| CGAACCAACC AATACAAAAT CCAACATTTC AA-TATAA-T GACGGAATAT AATGCGGAAG 157 ACTTAAACTC ATTAATGAAA ATCGATTAAA TAACTTCTAA AAACGC-ATT AC--TTATTA 9686 |||||||||| |||||||||| ||| |||||| |||||||||| |||| | | || |||||| ACTTAAACTC ATTAATGAAA ATCAATTAAA TAACTTCTAA AAACTCAACA ACTATTATTA 217 TTCCCAAAAT CTGGAAGTCA TCATCACAAG AACATCTATC CTCAAATCAC TAATTCTAAG 9626 | |||||||| |||||||||| |||||||||| |||||||||| ||||||| || |||||||||| TCCCCAAAAT CTGGAAGTCA TCATCACAAG AACATCTATC CTCAAATTAC TAATTCTAAG 277 AGTATCTAGA AAGCTAGAAT AAATAGAAAG CTAGTCCTTG CCGGAACTTC AAGGCATCAA 9566 |||||||||| |||||||||| || || |||| ||||||| || |||||||||| |||||||||| AGTATCTAGA AAGCTAGAAT AACTAAAAAG CTAGTCCATG CCGGAACTTC AAGGCATCAA 337 GACATGAAGA AGAAGATCCA GTCCAAGCTA GAAGCGTTAG CTCACCCTGA AATCCGGTGT 9506 |||||||||| |||||||||| |||||||||| |||||||||| ||||| |||| |||||||| | GACATGAAGA AGAAGATCCA GTCCAAGCTA GAAGCGTTAG CTCACACTGA AATCCGGTAT 397 AATGAAGACT GGCTAGAGTT GCGATTGAGT TGAAGGCGAC AGTACGTTTA CT 9454 |||||||||| |||||||||| ||| |||||| ||||| |||| |||||||| || AATGAAGACT GGCTAGAGTT GCGGTTGAGT TGAAGACGAC GGTACGTTTG CT 449 hqPGS_C06HBa0024L21.1-7-_SGN-E370357+ (9884 9454) ******************************************************************************** EST sequence 23 -strand 299 n (File: SGN-E373117-) 1 TTTTTTTTTT TCTAAAAACT CAACAACTAT TATTATCCCC AAAATCTGGA AGTCATCATC 61 ACAAGAACAT CTACTTCAAA TTACTAAATC TAAGAGTATC TAAGAAGCTA AAATACATAA 121 ACAGCTAGTC CATGCCGGAA CTTCAAGGCA TCAAGACATG AAGAAGAAGA TCCAGTCCAA 181 GCTAGAAGCG TTAGCTCACC CTGAAATCCG ATGTAATGAA GACTGGCTAG AGTTGCGGTT 241 GAGTTGAAGA CGACGGTACG TTTGCCAAAA TTACGACAGT ATTTGGACAA GCTAGAAGA Predicted gene structure (within gDNA segment 10663 to 8263): Exon 1 9691 9457 ( 235 n); cDNA 30 263 ( 234 n); score: 0.932 PPA cDNA 13 1 MATCH C06HBa0024L21.1-7- SGN-E373117- 0.932 235 0.786 C PGS_C06HBa0024L21.1-7-_SGN-E373117- (9691 9457) Alignment (genomic DNA sequence = upper lines): TTATTATTCC CAAAATCTGG AAGTCATCAT CACAAGAACA TCTATCCTCA AATCACTAAT 9632 ||||||| || |||||||||| |||||||||| |||||||||| |||| | ||| ||| ||||| TTATTATCCC CAAAATCTGG AAGTCATCAT CACAAGAACA TCTA-CTTCA AATTACTAAA 88 TCTAAGAGTA TCTAGAAAGC TAGAATAAAT AGAAAGCTAG TCCTTGCCGG AACTTCAAGG 9572 |||||||||| |||| |||| || |||| || | | |||||| ||| |||||| |||||||||| TCTAAGAGTA TCTAAGAAGC TAAAATACAT AAACAGCTAG TCCATGCCGG AACTTCAAGG 148 CATCAAGACA TGAAGAAGAA GATCCAGTCC AAGCTAGAAG CGTTAGCTCA CCCTGAAATC 9512 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATCAAGACA TGAAGAAGAA GATCCAGTCC AAGCTAGAAG CGTTAGCTCA CCCTGAAATC 208 CGGTGTAATG AAGACTGGCT AGAGTTGCGA TTGAGTTGAA GGCGACAGTA CGTTT 9457 || ||||||| |||||||||| ||||||||| |||||||||| | |||| ||| ||||| CGATGTAATG AAGACTGGCT AGAGTTGCGG TTGAGTTGAA GACGACGGTA CGTTT 263 hqPGS_C06HBa0024L21.1-7-_SGN-E373117- (9691 9457) ******************************************************************************** EST sequence 68 +strand 299 n (File: SGN-E373116+) 1 TTTTTTTTTT CTAAAAACTC AACAACTATT ATTATCCCCA AAATCTGGAA GTCATCATCA 61 CAAGAACATC TACTTCAAAT TACTAAATCT AAGAGTATCT AAGAAGCTAA AATACATAAA 121 CAGCTAGTCC ATGCCGGAAC TTCAAGGCAT CAAGACATGA AGAAGAAGAT CCAGTCCAAG 181 CTAGAAGCGT TAGCTCACCC TGAAATCCGA TGTAATGAAG ACTGGCTAGA GTTGCGGTTG 241 AGTTGAAGAC GACGGTACGT TTGCCAAAAT TACGACAGTA TTTGGACAAG CTAGAAGAG Predicted gene structure (within gDNA segment 10643 to 8243): Exon 1 9691 9457 ( 235 n); cDNA 29 262 ( 234 n); score: 0.932 PPA cDNA 12 1 MATCH C06HBa0024L21.1-7- SGN-E373116+ 0.932 235 0.786 C PGS_C06HBa0024L21.1-7-_SGN-E373116+ (9691 9457) Alignment (genomic DNA sequence = upper lines): TTATTATTCC CAAAATCTGG AAGTCATCAT CACAAGAACA TCTATCCTCA AATCACTAAT 9632 ||||||| || |||||||||| |||||||||| |||||||||| |||| | ||| ||| ||||| TTATTATCCC CAAAATCTGG AAGTCATCAT CACAAGAACA TCTA-CTTCA AATTACTAAA 87 TCTAAGAGTA TCTAGAAAGC TAGAATAAAT AGAAAGCTAG TCCTTGCCGG AACTTCAAGG 9572 |||||||||| |||| |||| || |||| || | | |||||| ||| |||||| |||||||||| TCTAAGAGTA TCTAAGAAGC TAAAATACAT AAACAGCTAG TCCATGCCGG AACTTCAAGG 147 CATCAAGACA TGAAGAAGAA GATCCAGTCC AAGCTAGAAG CGTTAGCTCA CCCTGAAATC 9512 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATCAAGACA TGAAGAAGAA GATCCAGTCC AAGCTAGAAG CGTTAGCTCA CCCTGAAATC 207 CGGTGTAATG AAGACTGGCT AGAGTTGCGA TTGAGTTGAA GGCGACAGTA CGTTT 9457 || ||||||| |||||||||| ||||||||| |||||||||| | |||| ||| ||||| CGATGTAATG AAGACTGGCT AGAGTTGCGG TTGAGTTGAA GACGACGGTA CGTTT 262 hqPGS_C06HBa0024L21.1-7-_SGN-E373116+ (9691 9457) ******************************************************************************** EST sequence 35 -strand 219 n (File: SGN-E298638-) 1 TTTTTTTTTT TCTAAAAACT CAACAACTAT TATTATCCCC AAAATCTGGC AGTCATCATC 61 ACAAGAACAT GTACTTCAAA TTACTAAATC TAAGAGTATC TAAGAAGCTA AAATACATAA 121 ACAGCTAGTC CATGCCGGAA CTTCAAGGCA TCAAGACATG AAGAAGAAGA TCCAGTCCAA 181 GCTAGAAGCG TTAGCTCACC CTGAAATCCG ATGTAATGA Predicted gene structure (within gDNA segment 11517 to 8820): Exon 1 9691 9501 ( 191 n); cDNA 30 219 ( 190 n); score: 0.921 PPA cDNA 13 1 MATCH C06HBa0024L21.1-7- SGN-E298638- 0.921 191 0.872 C PGS_C06HBa0024L21.1-7-_SGN-E298638- (9691 9501) Alignment (genomic DNA sequence = upper lines): TTATTATTCC CAAAATCTGG AAGTCATCAT CACAAGAACA TCTATCCTCA AATCACTAAT 9632 ||||||| || |||||||||| ||||||||| |||||||||| | || | ||| ||| ||||| TTATTATCCC CAAAATCTGG CAGTCATCAT CACAAGAACA TGTA-CTTCA AATTACTAAA 88 TCTAAGAGTA TCTAGAAAGC TAGAATAAAT AGAAAGCTAG TCCTTGCCGG AACTTCAAGG 9572 |||||||||| |||| |||| || |||| || | | |||||| ||| |||||| |||||||||| TCTAAGAGTA TCTAAGAAGC TAAAATACAT AAACAGCTAG TCCATGCCGG AACTTCAAGG 148 CATCAAGACA TGAAGAAGAA GATCCAGTCC AAGCTAGAAG CGTTAGCTCA CCCTGAAATC 9512 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATCAAGACA TGAAGAAGAA GATCCAGTCC AAGCTAGAAG CGTTAGCTCA CCCTGAAATC 208 CGGTGTAATG A 9501 || ||||||| | CGATGTAATG A 219 hqPGS_C06HBa0024L21.1-7-_SGN-E298638- (9691 9501) ******************************************************************************** EST sequence 44 -strand 620 n (File: SGN-E238551-) 1 CTATTATTTC CCAAAATCTG GAAGTTATCA TCACAAGAAC ATCTACTTCG AATTACTAAA 61 TCTAAGAGTA TCTAAGAAGC TAAAATACAT AAACAGCTAG TCCATGCCGG AACTTCAAGG 121 CATCAAGACA TGAAGAAGAA GATCCAGTCC AAGCTAGAAG CTTTGTTTTA TCGAAAAAAG 181 GTGATTTTTC GAAAAGAGTT TGTTTTATTT TAAAGTATTT TTCGACTTTA GGAGTCGCCA 241 CTTAATTTTT AAGAAAAATC AAGAAAACTC ATTCTCAAAA CAATTTAAAC AGAAAAGTCG 301 TTTTGAAAAT ATTTTTTAGG ATTCGGGATT CTTATTAGCG TCTTAGGAAG GTGTTTAAGG 361 CACCTAAGAC ACTCCGTTAA ATACGGTTTT CCAACGACTA ACTTATTTGA TTATTTTTAT 421 TTTTACCCTT TGCAAATTTA TTTGAACTTT TATCACGATT TACTTAGCCA AACTTTGCAA 481 ATTTGAGATA TTAATCTTTT AAGATTCCGT CTTAGTTAAA CTTTCTAAGC CTTAACTCTC 541 TAAGCAGACT TTCAAATTTT AAACCTCTAT CGTTTCAAAA CTTCAATTTT TATTTTTTAG 601 TTTCATAAAG CAAAAGGCGT Predicted gene structure (within gDNA segment 10365 to 4341): Exon 1 9692 9531 ( 162 n); cDNA 1 161 ( 161 n); score: 0.895 MATCH C06HBa0024L21.1-7- SGN-E238551- 0.895 162 0.261 C PGS_C06HBa0024L21.1-7-_SGN-E238551- (9692 9531) Alignment (genomic DNA sequence = upper lines): CTTATTATTC CCAAAATCTG GAAGTCATCA TCACAAGAAC ATCTATCCTC AAATCACTAA 9633 || | ||| |||||||||| ||||| |||| |||||||||| ||||| | || ||| ||||| CTATTATTTC CCAAAATCTG GAAGTTATCA TCACAAGAAC ATCTA-CTTC GAATTACTAA 59 TTCTAAGAGT ATCTAGAAAG CTAGAATAAA TAGAAAGCTA GTCCTTGCCG GAACTTCAAG 9573 ||||||||| ||||| ||| ||| |||| | || | ||||| |||| ||||| |||||||||| ATCTAAGAGT ATCTAAGAAG CTAAAATACA TAAACAGCTA GTCCATGCCG GAACTTCAAG 119 GCATCAAGAC ATGAAGAAGA AGATCCAGTC CAAGCTAGAA GC 9531 |||||||||| |||||||||| |||||||||| |||||||||| || GCATCAAGAC ATGAAGAAGA AGATCCAGTC CAAGCTAGAA GC 161 hqPGS_C06HBa0024L21.1-7-_SGN-E238551- (9692 9531) ******************************************************************************** EST sequence 26 -strand 402 n (File: SGN-E352844-) 1 TTTTTTTTAT AAAAACCAAT TCAATAACTA TTATTTCCCA AAATCTGGAA GTTATCATCA 61 CAAGAACATC TACTTCGAAT TACTAAATCT AAGAGTATCT AAGAAGCTAA AATACATAAA 121 CAGCTAGTCC ATGCCGGAAC TTCAAGGCAT CAAGACATGA AGAAGAAGAT CCAGTCCAAG 181 CTAGAAGCTT TGTTTTATCG AAAAAAGGTG ATTTTTCGAA AAGAGTTTGT TTTATTTTAA 241 AGTATTTTTC GACTTTAGGA GTCGCCACTT AATTTTTAAG AAAAATCAAG AAAACTCATT 301 CTCAAAACAA TTTAAACAGA AAAGTCGTTT TGAAAATATT TTTTAGGATT CGGGATTCTT 361 ATTAGCGTCT TAGGAAGGTG TTTAAGGCAC CTAAGACACT CC Predicted gene structure (within gDNA segment 10635 to 6791): Exon 1 9685 9531 ( 155 n); cDNA 35 188 ( 154 n); score: 0.916 MATCH C06HBa0024L21.1-7- SGN-E352844- 0.916 155 0.386 C PGS_C06HBa0024L21.1-7-_SGN-E352844- (9685 9531) Alignment (genomic DNA sequence = upper lines): TTCCCAAAAT CTGGAAGTCA TCATCACAAG AACATCTATC CTCAAATCAC TAATTCTAAG 9626 |||||||||| |||||||| | |||||||||| |||||||| | || ||| || ||| |||||| TTCCCAAAAT CTGGAAGTTA TCATCACAAG AACATCTA-C TTCGAATTAC TAAATCTAAG 93 AGTATCTAGA AAGCTAGAAT AAATAGAAAG CTAGTCCTTG CCGGAACTTC AAGGCATCAA 9566 |||||||| |||||| ||| | ||| | || ||||||| || |||||||||| |||||||||| AGTATCTAAG AAGCTAAAAT ACATAAACAG CTAGTCCATG CCGGAACTTC AAGGCATCAA 153 GACATGAAGA AGAAGATCCA GTCCAAGCTA GAAGC 9531 |||||||||| |||||||||| |||||||||| ||||| GACATGAAGA AGAAGATCCA GTCCAAGCTA GAAGC 188 hqPGS_C06HBa0024L21.1-7-_SGN-E352844- (9685 9531) ******************************************************************************** EST sequence 47 -strand 666 n (File: SGN-E368629-) 1 TTTTTTTTTT TTTTTTTTTT TTTTTTATAA AAACCAATTC AATAACTATT ATTTCCCAAA 61 ATCTGGAAGT TATCATCACA AGAACATCTA CTTCGAATTA CTAAATCTAG AAGTATCTAA 121 GAGCCTAAAA TACATAACAC AGTTAGTCCA TGCCGAAACT TCAAGGCATC AAGACATAAA 181 GAAGAAGATC CAGTCCAAGC TAGAAGCTTT GTTTTATCGA AAAAAGGTGA TTTTTCGAAA 241 AGAGTTTGTT TTATTTTAAA GTATTTTTCG ACTTTAGGAG TCGCCACTTA ATTTTTAAGA 301 AAAATCAAGA AAACTCATTC TCAAAACAAT TTAAACAGAA AAGTCGTTTT GAAAATATTT 361 TTTAGGATTC GGGATTCTTA TTAGCGTCTT AGGAAGGTGT TTAAGGCACC TAAGACACTC 421 CGTTAAATAC GGTTTTCCAA CGACTAACTT ATTTGATTAT TTTTATTTTT ACCCTTTGCA 481 AATTTATTTG AACTTTTATC ACGATTTACT TAGCCAAACT TTGCAAATTT GAGATATTAA 541 TCTTTTAAGA TTCCGTCTTA GTTAAACTTT CTAAGCCTTA ACTCTCTAAG CAGACTTTCA 601 AATTTTAAAC CTCTATCGTT TCAAAACTTC AATTTTTATT TTTTAGTTTC ATAAAGCAAA 661 AGGCGT Predicted gene structure (within gDNA segment 10815 to 4341): Exon 1 9685 9531 ( 155 n); cDNA 53 207 ( 155 n); score: 0.855 PPA cDNA 28 1 MATCH C06HBa0024L21.1-7- SGN-E368629- 0.855 155 0.233 C PGS_C06HBa0024L21.1-7-_SGN-E368629- (9685 9531) Alignment (genomic DNA sequence = upper lines): TTCCCAAAAT CTGGAAGTCA TCATCACAAG AACATCTATC CTCAAATCAC TAATTCTAAG 9626 |||||||||| |||||||| | |||||||||| |||||||| | || ||| || ||| |||| TTCCCAAAAT CTGGAAGTTA TCATCACAAG AACATCTA-C TTCGAATTAC TAAATCTAGA 111 AGTATCTAGA AAGCTAGAAT AAAT-AGAAA GCTAGTCCTT GCCGGAACTT CAAGGCATCA 9567 |||||||| | ||| ||| | || | | | | |||||| | |||| ||||| |||||||||| AGTATCTAAG AGCCTAAAAT ACATAACACA GTTAGTCCAT GCCGAAACTT CAAGGCATCA 171 AGACATGAAG AAGAAGATCC AGTCCAAGCT AGAAGC 9531 |||||| ||| |||||||||| |||||||||| |||||| AGACATAAAG AAGAAGATCC AGTCCAAGCT AGAAGC 207 hqPGS_C06HBa0024L21.1-7-_SGN-E368629- (9685 9531) ******************************************************************************** EST sequence 98 -strand 612 n (File: SGN-E394609-) 1 ATTATTACAC CCCTAATGAA ATGATTAAGG AACTTATTAA AGCAAAACAA CTAAATTCTT 61 ATTTTGCAAT CTTTTCTTGT CATTCACAAG CGATAATTCT AAATCTTTTT CCTTCTCTCC 121 ATTTTATACA AGCTCTTGGG AAAATTGTAT ATAATAGCAA ACTAGTAATC TAACTAAATG 181 GAGTAGCTAG AGTTTGATTT AATTGTGCTC CATAGCAAAC GTTAGCTAAA GTTTGTCAGG 241 CGTCTCCCTC CCAAAAATCT CGCTCGCCAC TCTCCATTCT CGCTCGCCTA TCTCGCTATA 301 TACACAGAAG TGTATAAATT CTGTTTCTAT TTTGTATAAA GCGAGAGAAA ATTGTATATA 361 CACATGTAAA AATATATATC TTCGTGTTAT ACACTTAATT ATACAAATTA CAAACATTTT 421 ACTTCAAATA TTGCAGAGAA AAAGGCCAAC GAATTATACA ATTGTGAATT ATATAATTGC 481 AGTGAAATAC AATTTTCTCT AACTTTATAC AACAGAAGTG TATATATTGT GTTTTTGTTT 541 TTGTATAAAG CGAGACAAAA ACATATATAT TCTTGCCATA CACTTATAAT TATGCAATAT 601 ACATACATTT TA Predicted gene structure (within gDNA segment 5382 to 11575): Exon 1 10418 10754 ( 337 n); cDNA 122 436 ( 315 n); score: 0.849 Intron 1 10755 10784 ( 30 n); Pd: 0.000 (s: 0.92), Pa: 0.994 (s: 0.85) ?? Exon 2 10785 10955 ( 171 n); cDNA 437 610 ( 174 n); score: 0.886 MATCH C06HBa0024L21.1-7+ SGN-E394609- 0.861 508 0.830 C PGS_C06HBa0024L21.1-7+_SGN-E394609- (10418 10754,10785 10955) Alignment (genomic DNA sequence = upper lines): TTTTAAATAA TAACATGGGA TAATTGTATA TAATAGCAAA TTAATAACTT AAAATAAATG 10477 ||||| | || | ||||| ||||||||| |||||||||| || ||| | || |||||| TTTTATACAA GCTCTTGGGA AAATTGTATA TAATAGCAAA CTAGTAA-TC TAACTAAATG 180 GAGTAGCTAC GGTTTGATTT AATTGTGCTC CATAGCAAAC GTTAGTCAAA GTTTGCCAGT 10537 ||||||||| ||||||||| |||||||||| |||||||||| ||||| ||| ||||| ||| GAGTAGCTAG AGTTTGATTT AATTGTGCTC CATAGCAAAC GTTAGCTAAA GTTTGTCAGG 240 CGCCTCTCTA CCAAAAATCT CGCTCGCCAC TCTCCCATTC TCGCTCGCCA CTCTCCCTCT 10597 || ||| || |||||||||| |||||||||| ||| |||||| ||||||| | || | ||| CGTCTCCCTC CCAAAAATCT CGCTCGCCAC TCT-CCATTC TCGCTCG-C- CTAT--CTC- 294 GCTCACCTCT CTCGCTTTAT ACACAGAAGT GTATAAATTG TGTTTCTGTT TTGTATAAAG 10657 ||| | ||| |||||||||| ||||||||| ||||||| || |||||||||| GCT-A----- -------TAT ACACAGAAGT GTATAAATTC TGTTTCTATT TTGTATAAAG 341 CGAGAGAAAA TTGTATATAC ACATGCAAAA ATATATATCT TTGTGCTATA CACTTAATTA 10717 |||||||||| |||||||||| ||||| |||| |||||||||| | ||| |||| |||||||||| CGAGAGAAAA TTGTATATAC ACATGTAAAA ATATATATCT TCGTGTTATA CACTTAATTA 401 TACAATTTAC AAACATTTTA CTTCAATTCA ATTGCAGACA AATGCAAATT TTATACAAAT 10777 ||||| |||| |||||||||| |||||| | ||||||| TACAAATTAC AAACATTTTA CTTCAAAT-- ATTGCAG... .......... .......... 436 ATTGCAGCG- AAAAGGCCAA CGAATCATAC AATTGCGAAT TATACAATTG CAGTAAAATA 10836 | |||||||||| ||||| |||| ||||| |||| |||| ||||| |||| ||||| .......AGA AAAAGGCCAA CGAATTATAC AATTGTGAAT TATATAATTG CAGTGAAATA 489 CAATTTTCTC TCGCTTTATA CAACAGAA-- GTATATATTG TGTTTCTGTT TTTGTATAAA 10894 |||||||||| | ||||||| |||||||| |||||||||| ||||| |||| |||||||||| CAATTTTCTC TAACTTTATA CAACAGAAGT GTATATATTG TGTTTTTGTT TTTGTATAAA 549 GCGAGAGAAA AACATATATC TTCTTCCTAT ACACTTATAA TTATGCAATA TACATACATT 10954 |||||| ||| ||||||||| ||||| | || |||||||||| |||||||||| |||||||||| GCGAGACAAA AACATATATA TTCTTGCCAT ACACTTATAA TTATGCAATA TACATACATT 609 T 10955 | T 610 hqPGS_C06HBa0024L21.1-7+_SGN-E394609- (10418 10754,10785 10955) ******************************************************************************** EST sequence 65 -strand 570 n (File: SGN-E379618-) 1 GCAAAACAAC TAAATTCTTA TTTTGCAATC TTTTCTTGTC ATTCACAAGC GATAATTCTA 61 AATCTTTTTC CTTCTCTCCA TNTTATACAA GCTCTTGGGA AAATTGTATA TAATAGCAAA 121 CTAGTAATCT AACTAAATGG AGTAGCTAGA GTTTGATTTA ATTGTGCTCC ATAGCAAACG 181 TTAGCTAAAG TTTGTCAGGC GTCTCCCTCC CAAAAATCTC GCTCGCCACT CTCCATTCTC 241 GCTCGCCTAT CTCGCTATAT ACACAGAAGT GTATAAATTC TGTTTCTATT TTGTATAAAG 301 CGAGAGAAAA TTGTATATAC ACATGTAAAA ATATATATCT TCGTGTTATA CACTTAATTA 361 TACAAATTAC AAACATTTTA CTTCAAATAT TGCAGAGAAA AAGGCCAACG AATTATACAA 421 TTGTGAATTA TATAATTGCA GTGAAATACA ATTTTCTCTA ACTTTATACA ACAGAAGTGT 481 ATATATTGTG TTTTTGTTTT TGTATAAAGC GAGACAAAAA CATATATATT CTTGCCATAC 541 ACTTATAATT ATGCAATATA CATACATTTT Predicted gene structure (within gDNA segment 7435 to 11565): Exon 1 10420 10754 ( 335 n); cDNA 83 395 ( 313 n); score: 0.848 Intron 1 10755 10784 ( 30 n); Pd: 0.000 (s: 0.92), Pa: 0.994 (s: 0.85) ?? Exon 2 10785 10955 ( 171 n); cDNA 396 569 ( 174 n); score: 0.886 MATCH C06HBa0024L21.1-7+ SGN-E379618- 0.861 506 0.888 C PGS_C06HBa0024L21.1-7+_SGN-E379618- (10420 10754,10785 10955) Alignment (genomic DNA sequence = upper lines): TTAAATAATA ACATGGGATA ATTGTATATA ATAGCAAATT AATAACTTAA AATAAATGGA 10479 ||| | || | ||||| | |||||||||| |||||||| | | ||| | | | |||||||| TTATACAAGC TCTTGGGAAA ATTGTATATA ATAGCAAACT AGTAA-TCTA ACTAAATGGA 141 GTAGCTACGG TTTGATTTAA TTGTGCTCCA TAGCAAACGT TAGTCAAAGT TTGCCAGTCG 10539 ||||||| | |||||||||| |||||||||| |||||||||| ||| ||||| ||| ||| || GTAGCTAGAG TTTGATTTAA TTGTGCTCCA TAGCAAACGT TAGCTAAAGT TTGTCAGGCG 201 CCTCTCTACC AAAAATCTCG CTCGCCACTC TCCCATTCTC GCTCGCCACT CTCCCTCTGC 10599 ||| || || |||||||||| |||||||||| | |||||||| ||||| | || | ||| || TCTCCCTCCC AAAAATCTCG CTCGCCACTC T-CCATTCTC GCTCG-C-CT AT--CTC-GC 255 TCACCTCTCT CGCTTTATAC ACAGAAGTGT ATAAATTGTG TTTCTGTTTT GTATAAAGCG 10659 | | ||||| |||||||||| ||||||| || ||||| |||| |||||||||| T-A------- -----TATAC ACAGAAGTGT ATAAATTCTG TTTCTATTTT GTATAAAGCG 302 AGAGAAAATT GTATATACAC ATGCAAAAAT ATATATCTTT GTGCTATACA CTTAATTATA 10719 |||||||||| |||||||||| ||| |||||| ||||||||| ||| |||||| |||||||||| AGAGAAAATT GTATATACAC ATGTAAAAAT ATATATCTTC GTGTTATACA CTTAATTATA 362 CAATTTACAA ACATTTTACT TCAATTCAAT TGCAGACAAA TGCAAATTTT ATACAAATAT 10779 ||| |||||| |||||||||| |||| | || ||||| CAAATTACAA ACATTTTACT TCAAAT--AT TGCAG..... .......... .......... 395 TGCAGCG-AA AAGGCCAACG AATCATACAA TTGCGAATTA TACAATTGCA GTAAAATACA 10838 | || |||||||||| ||| |||||| ||| |||||| || ||||||| || ||||||| .....AGAAA AAGGCCAACG AATTATACAA TTGTGAATTA TATAATTGCA GTGAAATACA 450 ATTTTCTCTC GCTTTATACA ACAGAA--GT ATATATTGTG TTTCTGTTTT TGTATAAAGC 10896 ||||||||| ||||||||| |||||| || |||||||||| ||| |||||| |||||||||| ATTTTCTCTA ACTTTATACA ACAGAAGTGT ATATATTGTG TTTTTGTTTT TGTATAAAGC 510 GAGAGAAAAA CATATATCTT CTTCCTATAC ACTTATAATT ATGCAATATA CATACATTT 10955 |||| ||||| ||||||| || ||| | |||| |||||||||| |||||||||| ||||||||| GAGACAAAAA CATATATATT CTTGCCATAC ACTTATAATT ATGCAATATA CATACATTT 569 hqPGS_C06HBa0024L21.1-7+_SGN-E379618- (10420 10754,10785 10955) ******************************************************************************** EST sequence 111 -strand 450 n (File: SGN-E200845-) 1 CTAGTAATCT AACTAAATGG AGTAGCTAGA GTTTGATTTA ATTGTGCTCC ATAGCAAACG 61 TTAGCTAAAG TTTGTCAGGC GTCTCCCTCC CAAAAATCTC GCTCGCCACT CTCCATTCTC 121 GCTCGCCTAT CTCGCTATAT ACACAGAAGT GTATAAATTC TGTTTCTATT TTGTATAAAG 181 CGAGAGAAAA TTGTATATAC ACATGTAAAA ATATATATCT TCGTGTTATA CACTTAATTA 241 TACAAATTAC AAACATTTTA CTTCAAATAT TGCAGAGAAA AAGGCCAACG AATTATACAA 301 TTGTGAATTA TATAATTGCA GTGAAATACA ATTTTCTCTA ACTTTATACA ACAGAAGTGT 361 ATATATTGTG TTTTTGTTTT TGTATAAAGC GAGACAAAAA CATATATATT CTTGCCATAC 421 ACTTATAATT ATGCAATATA CATACATTTT Predicted gene structure (within gDNA segment 8635 to 11565): Exon 1 10459 10754 ( 296 n); cDNA 2 275 ( 274 n); score: 0.855 Intron 1 10755 10784 ( 30 n); Pd: 0.000 (s: 0.92), Pa: 0.994 (s: 0.85) ?? Exon 2 10785 10955 ( 171 n); cDNA 276 449 ( 174 n); score: 0.886 MATCH C06HBa0024L21.1-7+ SGN-E200845- 0.866 467 1.038 C PGS_C06HBa0024L21.1-7+_SGN-E200845- (10459 10754,10785 10955) Alignment (genomic DNA sequence = upper lines): TAATAACTTA AAATAAATGG AGTAGCTACG GTTTGATTTA ATTGTGCTCC ATAGCAAACG 10518 || ||| || | ||||||| |||||||| |||||||||| |||||||||| |||||||||| TAGTAATCTA AC-TAAATGG AGTAGCTAGA GTTTGATTTA ATTGTGCTCC ATAGCAAACG 60 TTAGTCAAAG TTTGCCAGTC GCCTCTCTAC CAAAAATCTC GCTCGCCACT CTCCCATTCT 10578 |||| |||| |||| ||| | | ||| || | |||||||||| |||||||||| || ||||||| TTAGCTAAAG TTTGTCAGGC GTCTCCCTCC CAAAAATCTC GCTCGCCACT CT-CCATTCT 119 CGCTCGCCAC TCTCCCTCTG CTCACCTCTC TCGCTTTATA CACAGAAGTG TATAAATTGT 10638 |||||| | | | | ||| | || | | ||| |||||||||| |||||||| | CGCTCG-C-C TAT--CTC-G CT-A------ T------ATA CACAGAAGTG TATAAATTCT 161 GTTTCTGTTT TGTATAAAGC GAGAGAAAAT TGTATATACA CATGCAAAAA TATATATCTT 10698 |||||| ||| |||||||||| |||||||||| |||||||||| |||| ||||| |||||||||| GTTTCTATTT TGTATAAAGC GAGAGAAAAT TGTATATACA CATGTAAAAA TATATATCTT 221 TGTGCTATAC ACTTAATTAT ACAATTTACA AACATTTTAC TTCAATTCAA TTGCAGACAA 10758 ||| ||||| |||||||||| |||| ||||| |||||||||| ||||| | | |||||| CGTGTTATAC ACTTAATTAT ACAAATTACA AACATTTTAC TTCAAAT--A TTGCAG.... 275 ATGCAAATTT TATACAAATA TTGCAGCG-A AAAGGCCAAC GAATCATACA ATTGCGAATT 10817 | | |||||||||| |||| ||||| |||| ||||| .......... .......... ......AGAA AAAGGCCAAC GAATTATACA ATTGTGAATT 309 ATACAATTGC AGTAAAATAC AATTTTCTCT CGCTTTATAC AACAGAA--G TATATATTGT 10875 ||| |||||| ||| |||||| |||||||||| |||||||| ||||||| | |||||||||| ATATAATTGC AGTGAAATAC AATTTTCTCT AACTTTATAC AACAGAAGTG TATATATTGT 369 GTTTCTGTTT TTGTATAAAG CGAGAGAAAA ACATATATCT TCTTCCTATA CACTTATAAT 10935 |||| ||||| |||||||||| ||||| |||| |||||||| | |||| | ||| |||||||||| GTTTTTGTTT TTGTATAAAG CGAGACAAAA ACATATATAT TCTTGCCATA CACTTATAAT 429 TATGCAATAT ACATACATTT 10955 |||||||||| |||||||||| TATGCAATAT ACATACATTT 449 hqPGS_C06HBa0024L21.1-7+_SGN-E200845- (10459 10754,10785 10955) ******************************************************************************** EST sequence 88 -strand 325 n (File: SGN-E393076-) 1 CTATCTCGCT ATATACACAA AAAAAAATAA ATTCTGTTTT TATTTTGTAT AAAGCGAGAG 61 AAAATTGTAT ATACACATGT AAAAATATAT ATCTTCGTGT TATACACTTA ATTATACAAA 121 TTACAAACAT TTTACTTCAA ATATTGCAGA GAAAAAGGCC AACGAATTAT ACAATTGTGA 181 ATTATATAAT TGCAGTGAAA TACAATTTTC TCTAACTTTA TACAACAGAA GTGTATATAT 241 TGTGTTTTTG TTTTTGTATA AAGCGAGACA AAAACATATA TATTCTTGCC ATACACTTAT 301 AATTATGCAA TATACATACA TTTTA Predicted gene structure (within gDNA segment 8252 to 11575): Exon 1 10604 10754 ( 151 n); cDNA 1 149 ( 149 n); score: 0.887 Intron 1 10755 10784 ( 30 n); Pd: 0.000 (s: 0.92), Pa: 0.994 (s: 0.85) ?? Exon 2 10785 10955 ( 171 n); cDNA 150 323 ( 174 n); score: 0.886 MATCH C06HBa0024L21.1-7+ SGN-E393076- 0.887 322 0.991 C PGS_C06HBa0024L21.1-7+_SGN-E393076- (10604 10754,10785 10955) Alignment (genomic DNA sequence = upper lines): CTCTCTCGCT TTATACACAG AAGTGTATAA ATTGTGTTTC TGTTTTGTAT AAAGCGAGAG 10663 || ||||||| |||||||| || |||| ||| ||||| | |||||||| |||||||||| CTATCTCGCT ATATACACAA AAAAAAATAA ATTCTGTTTT TATTTTGTAT AAAGCGAGAG 60 AAAATTGTAT ATACACATGC AAAAATATAT ATCTTTGTGC TATACACTTA ATTATACAAT 10723 |||||||||| ||||||||| |||||||||| ||||| ||| |||||||||| ||||||||| AAAATTGTAT ATACACATGT AAAAATATAT ATCTTCGTGT TATACACTTA ATTATACAAA 120 TTACAAACAT TTTACTTCAA TTCAATTGCA GACAAATGCA AATTTTATAC AAATATTGCA 10783 |||||||||| |||||||||| | |||||| | TTACAAACAT TTTACTTCAA AT--ATTGCA G......... .......... .......... 149 GCG-AAAAGG CCAACGAATC ATACAATTGC GAATTATACA ATTGCAGTAA AATACAATTT 10842 | |||||| ||||||||| ||||||||| |||||||| | |||||||| | |||||||||| .AGAAAAAGG CCAACGAATT ATACAATTGT GAATTATATA ATTGCAGTGA AATACAATTT 208 TCTCTCGCTT TATACAACAG AA--GTATAT ATTGTGTTTC TGTTTTTGTA TAAAGCGAGA 10900 ||||| ||| |||||||||| || |||||| ||||||||| |||||||||| |||||||||| TCTCTAACTT TATACAACAG AAGTGTATAT ATTGTGTTTT TGTTTTTGTA TAAAGCGAGA 268 GAAAAACATA TATCTTCTTC CTATACACTT ATAATTATGC AATATACATA CATTT 10955 ||||||||| ||| ||||| | |||||||| |||||||||| |||||||||| ||||| CAAAAACATA TATATTCTTG CCATACACTT ATAATTATGC AATATACATA CATTT 323 hqPGS_C06HBa0024L21.1-7+_SGN-E393076- (10604 10754,10785 10955) ******************************************************************************** EST sequence 86 -strand 308 n (File: SGN-E393075-) 1 AAAAAAAAAA AAACCTCTGT TTCTATTTTG TATAAAGCGA GAGAAAATTG TATATACACA 61 TGTAAAAATA TATATCTTCG TGTTATACAC TTAATTATAC AAATTACAAA CATTTTACTT 121 CAAATATTGC AGAGAAAAAG GCCAACGAAT TATACAATTG TGAATTATAT AATTGCAGTG 181 AAATACAATT TTCTCTAACT TTATACAACA GAAGTGTATA TATTGTGTTT TTGTTTTTGT 241 ATAAAGCGAG ACAAAAACAT ATATATTCTT GCCATACACT TATAATTATG CAATATACAT 301 ACATTTTA Predicted gene structure (within gDNA segment 8422 to 11575): Exon 1 10624 10754 ( 131 n); cDNA 4 132 ( 129 n); score: 0.878 Intron 1 10755 10784 ( 30 n); Pd: 0.000 (s: 0.92), Pa: 0.994 (s: 0.85) ?? Exon 2 10785 10955 ( 171 n); cDNA 133 306 ( 174 n); score: 0.886 MATCH C06HBa0024L21.1-7+ SGN-E393075- 0.882 302 0.981 C PGS_C06HBa0024L21.1-7+_SGN-E393075- (10624 10754,10785 10955) Alignment (genomic DNA sequence = upper lines): AAGTGTATAA ATTGTGTTTC TGTTTTGTAT AAAGCGAGAG AAAATTGTAT ATACACATGC 10683 || | || | |||||| | |||||||| |||||||||| |||||||||| ||||||||| AAAAAAAAAA CCTCTGTTTC TATTTTGTAT AAAGCGAGAG AAAATTGTAT ATACACATGT 63 AAAAATATAT ATCTTTGTGC TATACACTTA ATTATACAAT TTACAAACAT TTTACTTCAA 10743 |||||||||| ||||| ||| |||||||||| ||||||||| |||||||||| |||||||||| AAAAATATAT ATCTTCGTGT TATACACTTA ATTATACAAA TTACAAACAT TTTACTTCAA 123 TTCAATTGCA GACAAATGCA AATTTTATAC AAATATTGCA GCG-AAAAGG CCAACGAATC 10802 | |||||| | | |||||| ||||||||| AT--ATTGCA G......... .......... .......... .AGAAAAAGG CCAACGAATT 151 ATACAATTGC GAATTATACA ATTGCAGTAA AATACAATTT TCTCTCGCTT TATACAACAG 10862 ||||||||| |||||||| | |||||||| | |||||||||| ||||| ||| |||||||||| ATACAATTGT GAATTATATA ATTGCAGTGA AATACAATTT TCTCTAACTT TATACAACAG 211 AA--GTATAT ATTGTGTTTC TGTTTTTGTA TAAAGCGAGA GAAAAACATA TATCTTCTTC 10920 || |||||| ||||||||| |||||||||| |||||||||| ||||||||| ||| ||||| AAGTGTATAT ATTGTGTTTT TGTTTTTGTA TAAAGCGAGA CAAAAACATA TATATTCTTG 271 CTATACACTT ATAATTATGC AATATACATA CATTT 10955 | |||||||| |||||||||| |||||||||| ||||| CCATACACTT ATAATTATGC AATATACATA CATTT 306 hqPGS_C06HBa0024L21.1-7+_SGN-E393075- (10624 10754,10785 10955) ******************************************************************************** EST sequence 13 +strand 680 n (File: SGN-E379427+) 1 ACTTCAAATA TTGTTCAGAA AAAGGGCAAC GAATTATACA ATTGTGAATT ATATAATTGC 61 AGTGAAATAC AATTTTCTCT AACTTTATAC AACAGAAGTG TATATATTGT GTTTTTGTTT 121 TTGTATAAAG CGAGACAAAA ACATATATAT TCTTGCCATA CACTTATAAT TATGCAATAT 181 ACATACATTT TAATTCGATT CAACGGTATG CAAAGCAAAT TTATAAAAAT ATTGCAGCGA 241 AATAAGCAGC GATTTATACG ATTGTGCATT ACACAATCGC AGTGAATGAA GATAGCGAAT 301 TATACAATTG CAGCGAAATA GGCCATCAAA TTATACAATT TAGGCCAGCG AATTATACAA 361 TTGTATATGT ATAGCGAATT ATACAGTTTT ATGTTTGCTA TGGAGCGCAA TTATGCAAAC 421 TTTGTTATAA CATACAAATA TGAATTTTTT ATTTGCTATA CGTGAAAGTT GCCCTTAATT 481 AAATGCTCCA CAGTCTATAC GAATATTTCC ATTCTTACCC GTCTTCACAC CAACTCGGCC 541 CAATTTAGTC ATCGCATTAA CAAATGCGGT TTCAAAAACT TTAGAATTAC TGGCCCACAA 601 ATTAACAGTA CCTTTAGACC TTTGGTCTGT GAACAAAACT TGATCTGATG TGAATAGGCC 661 CATTCCGTTT TGCAAGTTTT Predicted gene structure (within gDNA segment 9592 to 12446): Exon 1 10773 11109 ( 337 n); cDNA 5 343 ( 339 n); score: 0.871 Intron 1 11110 12150 (1041 n); Pd: 0.193 (s: 0.92), Pa: 0.000 (s: 0.98) Exon 2 12151 12287 ( 137 n); cDNA 344 479 ( 136 n); score: 0.942 MATCH C06HBa0024L21.1-7+ SGN-E379427+ 0.891 474 0.697 C PGS_C06HBa0024L21.1-7+_SGN-E379427+ (10773 11109,12151 12287) Alignment (genomic DNA sequence = upper lines): CAAATATTGC AGCGA-AAAG GCCAACGAAT CATACAATTG CGAATTATAC AATTGCAGTA 10831 ||||||||| || |||| | |||||||| ||||||||| |||||||| ||||||||| CAAATATTGT TCAGAAAAAG GGCAACGAAT TATACAATTG TGAATTATAT AATTGCAGTG 64 AAATACAATT TTCTCTCGCT TTATACAACA GAA--GTATA TATTGTGTTT CTGTTTTTGT 10889 |||||||||| |||||| || |||||||||| ||| ||||| |||||||||| ||||||||| AAATACAATT TTCTCTAACT TTATACAACA GAAGTGTATA TATTGTGTTT TTGTTTTTGT 124 ATAAAGCGAG AGAAAAACAT ATATCTTCTT CCTATACACT TATAATTATG CAATATACAT 10949 |||||||||| | |||||||| |||| ||||| | ||||||| |||||||||| |||||||||| ATAAAGCGAG ACAAAAACAT ATATATTCTT GCCATACACT TATAATTATG CAATATACAT 184 ACATTTCACT TCGATTCAAT TGTATGCAAA GCAAATTTTA TACAAATATT GCAACGAAAT 11009 |||||| | | ||||||||| ||||||||| ||||| |||| || ||||||| ||| |||||| ACATTTTAAT TCGATTCAAC GGTATGCAAA GCAAA-TTTA TAAAAATATT GCAGCGAAAT 243 AGGCACCGAA TTGTACAATT GTGCATTATA CAATTGCAGT GAAATAAGAT AACGAATTAT 11069 | ||| ||| || ||| ||| |||||||| | |||| ||||| ||| ||||| | |||||||| AAGCAGCGAT TTATACGATT GTGCATTACA CAATCGCAGT GAATGAAGAT AGCGAATTAT 303 ACAATTGCAG CAAAATAGGC TAGCAAATTA TACAATTTAG GTCAGCGAAT TATACAATTG 11129 |||||||||| | |||||||| | ||||||| |||||||||| ACAATTGCAG CGAAATAGGC CATCAAATTA TACAATTTAG .......... .......... 343 TATATGTATA GCGAATTATA CAATTTTATG TTTGTTATGA AGCAATTATG TAAACTTTAC 11189 .......... .......... .......... .......... .......... .......... 343 TATAGCATAT AAATATGAAT TTTTTATCTG CTATATGTGA AAGTTACCCT AATAATATTA 11249 .......... .......... .......... .......... .......... .......... 343 TATATATTTT TTATATAAGC CCATGAGAGA AGGGTGAATG GATAGCAAAG TTAAATGTAC 11309 .......... .......... .......... .......... .......... .......... 343 GAAAATTGAC GACTTTCAGG TTCAAATACG TGATTCTGAT TGTGGAAATA GGACGAAAAA 11369 .......... .......... .......... .......... .......... .......... 343 AGAACAATTA AGTTGAGCGC ACTTCTCAAT GTAAAAGATT GTCACTTTAT TTACTATTAT 11429 .......... .......... .......... .......... .......... .......... 343 ATATATATAT ATATATTTAT TTTTTTATTT TTTTTATTTT TTATTTTTTT TTGATGAAGC 11489 .......... .......... .......... .......... .......... .......... 343 AGTGTCACGT GACACCCCTT AATTTTTTTA GATACGCTTT TTACTACATT GATTGATACA 11549 .......... .......... .......... .......... .......... .......... 343 AGAATATAAT GATATTCTTT TTAATTAATT AATATAGAAA ACATTGTATA TAATAGCAAA 11609 .......... .......... .......... .......... .......... .......... 343 CTAATAACTT AAATTAAATG AAATAGCTAG GGTTTGATTT AATTGTGCTC CATAGCAAAC 11669 .......... .......... .......... .......... .......... .......... 343 ATTAGCTAAA ATTTGTCAGC GTCTCTCTCC CAAGAATCTC GCTCGCCACT CTCCATTCTC 11729 .......... .......... .......... .......... .......... .......... 343 GCTCGCCTCT CTCGCTTTAT ACACAAAAGT GTATAATTCT GTTTCTGTTT TGTATAAAGC 11789 .......... .......... .......... .......... .......... .......... 343 GAGAGAAAAT TGTATATACA CATGCAAAAA TGTATATCTT CGTGTTATAC ACTTAATTAT 11849 .......... .......... .......... .......... .......... .......... 343 ACAATTTACA AACATTTTAC TTCAAATATT GCAGAGAAAA AGGCCAACAA ATTATACAAT 11909 .......... .......... .......... .......... .......... .......... 343 TGCGAATTAT ACAATTGCAG TGAAATACAA TTTTCTCTAG CTTTATACAA CAGAAGTGTA 11969 .......... .......... .......... .......... .......... .......... 343 TATATTGTGT TTCTGTTTTT GTATAAAGCG AGAAAAACAT ATATCTTCTT GTTATACACT 12029 .......... .......... .......... .......... .......... .......... 343 TATAATTATG CAATATACAT ACATTTTAAT TCGATTCAAC TGTATGCAAA ACAAATTATA 12089 .......... .......... .......... .......... .......... .......... 343 CAATTGCAGC GAAATAGGCC AGCGAATTAT ACAATTTATG CCAGAGAATT ATACAATTTA 12149 .......... .......... .......... .......... .......... .......... 343 GGCCAGCGAA TTATACAATT GTATATGTAT AGCAAATTAT ACAGTTTTAT GTTTGCTATG 12209 ||||||||| |||||||||| |||||||||| ||| |||||| |||||||||| |||||||||| .GCCAGCGAA TTATACAATT GTATATGTAT AGCGAATTAT ACAGTTTTAT GTTTGCTATG 402 TAGCGTAATT ATGCAAAGTT TGCTATAGCA TACAAATATG AATTTTTTAT TTGCTATATG 12269 |||| |||| ||||||| || || |||| || |||||||||| |||||||||| |||||||| | GAGCGCAATT ATGCAAACTT TGTTATAACA TACAAATATG AATTTTTTAT TTGCTATACG 462 TGAAAGTTGC CCATTAAT 12287 |||||||||| || ||||| TGAAAGTTGC CC-TTAAT 479 hqPGS_C06HBa0024L21.1-7+_SGN-E379427+ (10773 11109,12151 12287) ******************************************************************************** EST sequence 1 +strand 701 n (File: SGN-E578389+) 1 GAAAAACATA TATCTTATTG CTATACACTT ATAATTATGC AATATACATA CATTTTAATT 61 CGGTTCAATT ATATGCAAAG CAAATTTTAT AATAATATTG CAGCGAAATA GGCAGCGAAT 121 TATACAATTG TAGTTAAATA GGATAGCGAA TTATACAATT GCAGCGAAAT AGGCCAGCGA 181 ATTATACAAT TTAGGTCAGC GAATTATACA ATTTTATGTT TGCTATGGAG CGCAATTATG 241 CAAACTTTGT TATAGCATAC AAATATGAAT TTTTTGTTTG TTATATGTGA AAGTTGCCCA 301 TTAATTAAAG AGTCAATAAA ATAGCGGTCT AATCAAGTCC TAAGCAGCCC AAGGTTTGAC 361 CCGTCAACCC AAAAATGAAT AATATTATGG GAAAAGGGTA TGATATACCC CTCAACTTTG 421 TCATTTGAAA CTGATATACC CCTCGTTATG AAAGTGGCTC ATATATACCC TTACCGTTAT 481 ACAAATGGTT CACATATACC TCTGCCGTTA CAAAATGAGC TCATATATAC CCTTCATTTA 541 ACGAAAGTGA AAAAATTACT TTTAAATTTA TAATTTTACT TTAATTTTAA AAAAAAATAT 601 ATTTAGGGGC ATATATGATT CTTTTTTCAA AGTTCAAGGT ATATTTCAAA TTTTTTTAAT 661 ACATAAATTA TTTTTTTGAC TTATTTATTA TAATTATTTG A Predicted gene structure (within gDNA segment 10801 to 12446): Exon 1 10901 11033 ( 133 n); cDNA 1 133 ( 133 n); score: 0.902 Intron 1 11034 11079 ( 46 n); Pd: 0.000 (s: 0.86), Pa: 0.436 (s: 0) Exon 2 11080 11109 ( 30 n); cDNA 134 164 ( 31 n); score: 0.750 Intron 2 11110 12098 ( 989 n); Pd: 0.193 (s: 0), Pa: 0.937 (s: 0.94) Exon 3 12099 12145 ( 47 n); cDNA 165 211 ( 47 n); score: 0.936 Intron 3 12146 12193 ( 48 n); Pd: 0.000 (s: 0.94), Pa: 0.000 (s: 0.92) Exon 4 12194 12287 ( 94 n); cDNA 212 305 ( 94 n); score: 0.936 MATCH C06HBa0024L21.1-7+ SGN-E578389+ 0.916 304 0.434 C PGS_C06HBa0024L21.1-7+_SGN-E578389+ (10901 11033,11080 11109,12099 12145,12194 12287) Alignment (genomic DNA sequence = upper lines): GAAAAACATA TATCTTCTTC CTATACACTT ATAATTATGC AATATACATA CATTTCACTT 10960 |||||||||| |||||| || |||||||||| |||||||||| |||||||||| ||||| | || GAAAAACATA TATCTTATTG CTATACACTT ATAATTATGC AATATACATA CATTTTAATT 60 CGATTCAATT GTATGCAAAG CAAATTTTAT ACAAATATTG CAACGAAATA GGCACCGAAT 11020 || ||||||| ||||||||| |||||||||| | ||||||| || ||||||| |||| ||||| CGGTTCAATT ATATGCAAAG CAAATTTTAT AATAATATTG CAGCGAAATA GGCAGCGAAT 120 TGTACAATTG TGCATTATAC AATTGCAGTG AAATAAGATA ACGAATTATA CAATTGCAGC 11080 | |||||||| | TATACAATTG TAG....... .......... .......... .......... .........T 134 AAAATAGGCT AGCAAATTAT ACAATT-TAG GTCAGCGAAT TATACAATTG TATATGTATA 11139 ||||||| | ||| |||||| |||||| || TAAATAGGAT AGCGAATTAT ACAATTGCAG .......... .......... .......... 164 GCGAATTATA CAATTTTATG TTTGTTATGA AGCAATTATG TAAACTTTAC TATAGCATAT 11199 .......... .......... .......... .......... .......... .......... 164 AAATATGAAT TTTTTATCTG CTATATGTGA AAGTTACCCT AATAATATTA TATATATTTT 11259 .......... .......... .......... .......... .......... .......... 164 TTATATAAGC CCATGAGAGA AGGGTGAATG GATAGCAAAG TTAAATGTAC GAAAATTGAC 11319 .......... .......... .......... .......... .......... .......... 164 GACTTTCAGG TTCAAATACG TGATTCTGAT TGTGGAAATA GGACGAAAAA AGAACAATTA 11379 .......... .......... .......... .......... .......... .......... 164 AGTTGAGCGC ACTTCTCAAT GTAAAAGATT GTCACTTTAT TTACTATTAT ATATATATAT 11439 .......... .......... .......... .......... .......... .......... 164 ATATATTTAT TTTTTTATTT TTTTTATTTT TTATTTTTTT TTGATGAAGC AGTGTCACGT 11499 .......... .......... .......... .......... .......... .......... 164 GACACCCCTT AATTTTTTTA GATACGCTTT TTACTACATT GATTGATACA AGAATATAAT 11559 .......... .......... .......... .......... .......... .......... 164 GATATTCTTT TTAATTAATT AATATAGAAA ACATTGTATA TAATAGCAAA CTAATAACTT 11619 .......... .......... .......... .......... .......... .......... 164 AAATTAAATG AAATAGCTAG GGTTTGATTT AATTGTGCTC CATAGCAAAC ATTAGCTAAA 11679 .......... .......... .......... .......... .......... .......... 164 ATTTGTCAGC GTCTCTCTCC CAAGAATCTC GCTCGCCACT CTCCATTCTC GCTCGCCTCT 11739 .......... .......... .......... .......... .......... .......... 164 CTCGCTTTAT ACACAAAAGT GTATAATTCT GTTTCTGTTT TGTATAAAGC GAGAGAAAAT 11799 .......... .......... .......... .......... .......... .......... 164 TGTATATACA CATGCAAAAA TGTATATCTT CGTGTTATAC ACTTAATTAT ACAATTTACA 11859 .......... .......... .......... .......... .......... .......... 164 AACATTTTAC TTCAAATATT GCAGAGAAAA AGGCCAACAA ATTATACAAT TGCGAATTAT 11919 .......... .......... .......... .......... .......... .......... 164 ACAATTGCAG TGAAATACAA TTTTCTCTAG CTTTATACAA CAGAAGTGTA TATATTGTGT 11979 .......... .......... .......... .......... .......... .......... 164 TTCTGTTTTT GTATAAAGCG AGAAAAACAT ATATCTTCTT GTTATACACT TATAATTATG 12039 .......... .......... .......... .......... .......... .......... 164 CAATATACAT ACATTTTAAT TCGATTCAAC TGTATGCAAA ACAAATTATA CAATTGCAGC 12099 | .......... .......... .......... .......... .......... .........C 165 GAAATAGGCC AGCGAATTAT ACAATTTATG CCAGAGAATT ATACAATTTA GGCCAGCGAA 12159 |||||||||| |||||||||| |||||||| | ||| ||||| |||||| GAAATAGGCC AGCGAATTAT ACAATTTAGG TCAGCGAATT ATACAA.... .......... 211 TTATACAATT GTATATGTAT AGCAAATTAT ACAGTTTTAT GTTTGCTATG TAGCGTAATT 12219 |||||| |||||||||| |||| |||| .......... .......... .......... ....TTTTAT GTTTGCTATG GAGCGCAATT 237 ATGCAAAGTT TGCTATAGCA TACAAATATG AATTTTTTAT TTGCTATATG TGAAAGTTGC 12279 ||||||| || || ||||||| |||||||||| |||||||| | ||| |||||| |||||||||| ATGCAAACTT TGTTATAGCA TACAAATATG AATTTTTTGT TTGTTATATG TGAAAGTTGC 297 CCATTAAT 12287 |||||||| CCATTAAT 305 hqPGS_C06HBa0024L21.1-7+_SGN-E578389+ (10901 11033,11080 11109,12099 12145,12194 12287) ******************************************************************************** EST sequence 58 +strand 666 n (File: SGN-E371327+) 1 TTTTTTTTTA GGCAGCGAAT TATACAATTG TGCATTATAC AATTGCAGTG AAATAGGATA 61 GCGAATTATA CAATTGTATA TGTATAGCGA ATTATACAAT TTTATGTTTG CTATGGAACG 121 CAATTATGCG AAGTTTGCTA TAGCATACAA ATATGAATTT TTTGTTTGCT GTATGTGAAA 181 AAAGTTGCCC AAAAATAAAT GAGAGTTAGA TTTAAATGAA ATGGACACAT TGATTTCTCG 241 TCTAAAAGCA TTAAAGGTGG TTGATTCTTA CTCGACTAAG TGCAGTAGCT TCCCCAAGTC 301 CATATAACGA ATCAATCAAC AGTGTCCGCA GTGAAGCTGG ACCTCTAGCC ATGTCCATCC 361 CTGTTTCACT TGCGACACCA AATATAGCCA ATGCAGAAGC TGTTGCTTCC ACAGCATGGG 421 ATGGATCAAC AGCGACAAAG GCAGCAATGA GGGCAGTGAC TGAACATCCA GATGCAGTAA 481 TCTTTTGCAA CATAGGCACC CCATTGTGAA CACAAACAAC CCTATCACCG TCTGTGATAT 541 AGTCAACAGC TCCAGAAACA GCGACTACAC TACCACTTTG TTGAGCGATG GACTTAGCAG 601 CTTCAACAGC ATCACTTGAA CCATGTACAC TATCCACACC CTTGGAATTT GAGTCAACAC 661 AACCCT Predicted gene structure (within gDNA segment 10203 to 12446): Exon 1 11012 11061 ( 50 n); cDNA 12 61 ( 50 n); score: 0.920 Intron 1 11062 12155 (1094 n); Pd: 0.000 (s: 0.92), Pa: 0.000 (s: 0.96) Exon 2 12156 12274 ( 119 n); cDNA 62 180 ( 119 n); score: 0.933 MATCH C06HBa0024L21.1-7+ SGN-E371327+ 0.929 169 0.254 C PGS_C06HBa0024L21.1-7+_SGN-E371327+ (11012 11061,12156 12274) Alignment (genomic DNA sequence = upper lines): GCACCGAATT GTACAATTGT GCATTATACA ATTGCAGTGA AATAAGATAA CGAATTATAC 11071 ||| |||||| ||||||||| |||||||||| |||||||||| |||| |||| GCAGCGAATT ATACAATTGT GCATTATACA ATTGCAGTGA AATAGGATAG .......... 61 AATTGCAGCA AAATAGGCTA GCAAATTATA CAATTTAGGT CAGCGAATTA TACAATTGTA 11131 .......... .......... .......... .......... .......... .......... 61 TATGTATAGC GAATTATACA ATTTTATGTT TGTTATGAAG CAATTATGTA AACTTTACTA 11191 .......... .......... .......... .......... .......... .......... 61 TAGCATATAA ATATGAATTT TTTATCTGCT ATATGTGAAA GTTACCCTAA TAATATTATA 11251 .......... .......... .......... .......... .......... .......... 61 TATATTTTTT ATATAAGCCC ATGAGAGAAG GGTGAATGGA TAGCAAAGTT AAATGTACGA 11311 .......... .......... .......... .......... .......... .......... 61 AAATTGACGA CTTTCAGGTT CAAATACGTG ATTCTGATTG TGGAAATAGG ACGAAAAAAG 11371 .......... .......... .......... .......... .......... .......... 61 AACAATTAAG TTGAGCGCAC TTCTCAATGT AAAAGATTGT CACTTTATTT ACTATTATAT 11431 .......... .......... .......... .......... .......... .......... 61 ATATATATAT ATATTTATTT TTTTATTTTT TTTATTTTTT ATTTTTTTTT GATGAAGCAG 11491 .......... .......... .......... .......... .......... .......... 61 TGTCACGTGA CACCCCTTAA TTTTTTTAGA TACGCTTTTT ACTACATTGA TTGATACAAG 11551 .......... .......... .......... .......... .......... .......... 61 AATATAATGA TATTCTTTTT AATTAATTAA TATAGAAAAC ATTGTATATA ATAGCAAACT 11611 .......... .......... .......... .......... .......... .......... 61 AATAACTTAA ATTAAATGAA ATAGCTAGGG TTTGATTTAA TTGTGCTCCA TAGCAAACAT 11671 .......... .......... .......... .......... .......... .......... 61 TAGCTAAAAT TTGTCAGCGT CTCTCTCCCA AGAATCTCGC TCGCCACTCT CCATTCTCGC 11731 .......... .......... .......... .......... .......... .......... 61 TCGCCTCTCT CGCTTTATAC ACAAAAGTGT ATAATTCTGT TTCTGTTTTG TATAAAGCGA 11791 .......... .......... .......... .......... .......... .......... 61 GAGAAAATTG TATATACACA TGCAAAAATG TATATCTTCG TGTTATACAC TTAATTATAC 11851 .......... .......... .......... .......... .......... .......... 61 AATTTACAAA CATTTTACTT CAAATATTGC AGAGAAAAAG GCCAACAAAT TATACAATTG 11911 .......... .......... .......... .......... .......... .......... 61 CGAATTATAC AATTGCAGTG AAATACAATT TTCTCTAGCT TTATACAACA GAAGTGTATA 11971 .......... .......... .......... .......... .......... .......... 61 TATTGTGTTT CTGTTTTTGT ATAAAGCGAG AAAAACATAT ATCTTCTTGT TATACACTTA 12031 .......... .......... .......... .......... .......... .......... 61 TAATTATGCA ATATACATAC ATTTTAATTC GATTCAACTG TATGCAAAAC AAATTATACA 12091 .......... .......... .......... .......... .......... .......... 61 ATTGCAGCGA AATAGGCCAG CGAATTATAC AATTTATGCC AGAGAATTAT ACAATTTAGG 12151 .......... .......... .......... .......... .......... .......... 61 CCAGCGAATT ATACAATTGT ATATGTATAG CAAATTATAC AGTTTTATGT TTGCTATGTA 12211 |||||| |||||||||| |||||||||| | |||||||| | |||||||| |||||||| | ....CGAATT ATACAATTGT ATATGTATAG CGAATTATAC AATTTTATGT TTGCTATGGA 117 GCGTAATTAT GCAAAGTTTG CTATAGCATA CAAATATGAA TTTTTTATTT GCTATATGTG 12271 || |||||| || ||||||| |||||||||| |||||||||| |||||| ||| ||| |||||| ACGCAATTAT GCGAAGTTTG CTATAGCATA CAAATATGAA TTTTTTGTTT GCTGTATGTG 177 AAA 12274 ||| AAA 180 hqPGS_C06HBa0024L21.1-7+_SGN-E371327+ (11012 11061,12156 12274) ******************************************************************************** EST sequence 90 -strand 153 n (File: SGN-E392727-) 1 AATTGTGAAT TATATAATTG CAGTGAAATA CAATTTTCTC TAACTTTATA CAACAGAAGT 61 GTATATATTG TGTTTTAAAT TTTGTATAAA GCGTGACAAA AACATATATA TTCTTGCCAT 121 ACACTTATAA TTATGCAATA TACATACATA TTA Predicted gene structure (within gDNA segment 9972 to 11593): Exon 1 10807 10953 ( 147 n); cDNA 1 149 ( 149 n); score: 0.871 MATCH C06HBa0024L21.1-7+ SGN-E392727- 0.871 147 0.961 C PGS_C06HBa0024L21.1-7+_SGN-E392727- (10807 10953) Alignment (genomic DNA sequence = upper lines): AATTGCGAAT TATACAATTG CAGTAAAATA CAATTTTCTC TCGCTTTATA CAACAGAA-- 10864 ||||| |||| |||| ||||| |||| ||||| |||||||||| | ||||||| |||||||| AATTGTGAAT TATATAATTG CAGTGAAATA CAATTTTCTC TAACTTTATA CAACAGAAGT 60 GTATATATTG TGTTTCTGTT TTTGTATAAA GCGAGAGAAA AACATATATC TTCTTCCTAT 10924 |||||||||| ||||| | |||||||||| ||| || ||| ||||||||| ||||| | || GTATATATTG TGTTTTAAAT TTTGTATAAA GCGTGACAAA AACATATATA TTCTTGCCAT 120 ACACTTATAA TTATGCAATA TACATACAT 10953 |||||||||| |||||||||| ||||||||| ACACTTATAA TTATGCAATA TACATACAT 149 hqPGS_C06HBa0024L21.1-7+_SGN-E392727- (10807 10953) ******************************************************************************** EST sequence 97 -strand 612 n (File: SGN-E394609-) 1 ATTATTACAC CCCTAATGAA ATGATTAAGG AACTTATTAA AGCAAAACAA CTAAATTCTT 61 ATTTTGCAAT CTTTTCTTGT CATTCACAAG CGATAATTCT AAATCTTTTT CCTTCTCTCC 121 ATTTTATACA AGCTCTTGGG AAAATTGTAT ATAATAGCAA ACTAGTAATC TAACTAAATG 181 GAGTAGCTAG AGTTTGATTT AATTGTGCTC CATAGCAAAC GTTAGCTAAA GTTTGTCAGG 241 CGTCTCCCTC CCAAAAATCT CGCTCGCCAC TCTCCATTCT CGCTCGCCTA TCTCGCTATA 301 TACACAGAAG TGTATAAATT CTGTTTCTAT TTTGTATAAA GCGAGAGAAA ATTGTATATA 361 CACATGTAAA AATATATATC TTCGTGTTAT ACACTTAATT ATACAAATTA CAAACATTTT 421 ACTTCAAATA TTGCAGAGAA AAAGGCCAAC GAATTATACA ATTGTGAATT ATATAATTGC 481 AGTGAAATAC AATTTTCTCT AACTTTATAC AACAGAAGTG TATATATTGT GTTTTTGTTT 541 TTGTATAAAG CGAGACAAAA ACATATATAT TCTTGCCATA CACTTATAAT TATGCAATAT 601 ACATACATTT TA Predicted gene structure (within gDNA segment 7025 to 12446): Exon 1 11592 12057 ( 466 n); cDNA 144 612 ( 469 n); score: 0.921 MATCH C06HBa0024L21.1-7+ SGN-E394609- 0.921 466 0.761 C PGS_C06HBa0024L21.1-7+_SGN-E394609- (11592 12057) Alignment (genomic DNA sequence = upper lines): ATTGTATATA ATAGCAAACT AATAACTTAA ATTAAATGAA ATAGCTAGGG TTTGATTTAA 11651 |||||||||| |||||||||| | ||| | | | |||||| | ||||||| | |||||||||| ATTGTATATA ATAGCAAACT AGTAATCT-A ACTAAATGGA GTAGCTAGAG TTTGATTTAA 202 TTGTGCTCCA TAGCAAACAT TAGCTAAAAT TTGTCA-GCG TCTCTCTCCC AAGAATCTCG 11710 |||||||||| |||||||| | |||||||| | |||||| ||| |||| ||||| || ||||||| TTGTGCTCCA TAGCAAACGT TAGCTAAAGT TTGTCAGGCG TCTCCCTCCC AAAAATCTCG 262 CTCGCCACTC TCCATTCTCG CTCGCCTCTC TCGCTTTATA CACAAAAGTG TAT-AATTCT 11769 |||||||||| |||||||||| ||||||| || ||||| |||| |||| ||||| ||| |||||| CTCGCCACTC TCCATTCTCG CTCGCCTATC TCGCTATATA CACAGAAGTG TATAAATTCT 322 GTTTCTGTTT TGTATAAAGC GAGAGAAAAT TGTATATACA CATGCAAAAA TGTATATCTT 11829 |||||| ||| |||||||||| |||||||||| |||||||||| |||| ||||| | |||||||| GTTTCTATTT TGTATAAAGC GAGAGAAAAT TGTATATACA CATGTAAAAA TATATATCTT 382 CGTGTTATAC ACTTAATTAT ACAATTTACA AACATTTTAC TTCAAATATT GCAGAGAAAA 11889 |||||||||| |||||||||| |||| ||||| |||||||||| |||||||||| |||||||||| CGTGTTATAC ACTTAATTAT ACAAATTACA AACATTTTAC TTCAAATATT GCAGAGAAAA 442 AGGCCAACAA ATTATACAAT TGCGAATTAT ACAATTGCAG TGAAATACAA TTTTCTCTAG 11949 |||||||| | |||||||||| || ||||||| | |||||||| |||||||||| ||||||||| AGGCCAACGA ATTATACAAT TGTGAATTAT ATAATTGCAG TGAAATACAA TTTTCTCTAA 502 CTTTATACAA CAGAAGTGTA TATATTGTGT TTCTGTTTTT GTATAAAGCG AG--AAAAAC 12007 |||||||||| |||||||||| |||||||||| || ||||||| |||||||||| || |||||| CTTTATACAA CAGAAGTGTA TATATTGTGT TTTTGTTTTT GTATAAAGCG AGACAAAAAC 562 ATATATCTTC TTGTTATACA CTTATAATTA TGCAATATAC ATACATTTTA 12057 |||||| ||| ||| ||||| |||||||||| |||||||||| |||||||||| ATATATATTC TTGCCATACA CTTATAATTA TGCAATATAC ATACATTTTA 612 hqPGS_C06HBa0024L21.1-7+_SGN-E394609- (11592 12057) ******************************************************************************** EST sequence 10 +strand 750 n (File: SGN-E379112+) 1 TGTGGGAATA TATATATATA TATATTCCGT TAATTAGACG AAATTGAGAA GCTGAAATCT 61 CACCTATAAC ATCAAGTATA CACGTTACCT ATGCCCTGGT TGTTTATAGC TGAATTTCAA 121 GCCCCTTTTC TTATTCTATT ATTACACCCC TAATGAAATG ATTAAGGAAC TTATTAAAGC 181 AAAACAACTA AATTCTTATT TTGCAATCTT TTCTTGTCAT TCACAAGCGA TAATTCTAAA 241 TCTTTTTCCT TCTCTCCATT TTATACAAGC TCTTGGGAAA ATTGTATATA ATAGCAAACT 301 AGTAATCTAA CTAAATGGAG TAGCTAGAGT TTGATTTAAT TGTGCTCCAT AGCAAACGTT 361 AGCTAAAGTT TGTCAGGCGT CTCCCTCCCA AAAATCTCGC TCGCCACTCT CCATTCTCGC 421 TCGCCTATCT CGCTATATAC ACAGAAGTGT ATAAATTCTG TTTCTATTTT GTATAAAGCG 481 AGAGAAAATT GTATATACAC ATGTAAAAAT ATATATCTTC GTGTTATACA CTTAATTATA 541 CAAATTACAA ACATTTTACT TCAAATATTG CAGAGAAAAA GGCCAACGAA TTATACAATT 601 GTGAATTATA TAATTGCAGT GAAATACAAT TTTCTCTAAC TTTATACAAC AGAAGTGTAT 661 ATATTGTGNT TTTTGTTTTT GTATAAAGCG AGACAAAAAC ATATATATTC TTGCCATACA 721 CTTATAATTA TGCAATATAC ATACATTTTA Predicted gene structure (within gDNA segment 6499 to 12446): Exon 1 11592 12057 ( 466 n); cDNA 281 750 ( 470 n); score: 0.915 MATCH C06HBa0024L21.1-7+ SGN-E379112+ 0.915 466 0.621 C PGS_C06HBa0024L21.1-7+_SGN-E379112+ (11592 12057) Alignment (genomic DNA sequence = upper lines): ATTGTATATA ATAGCAAACT AATAACTTAA ATTAAATGAA ATAGCTAGGG TTTGATTTAA 11651 |||||||||| |||||||||| | ||| | | | |||||| | ||||||| | |||||||||| ATTGTATATA ATAGCAAACT AGTAATCT-A ACTAAATGGA GTAGCTAGAG TTTGATTTAA 339 TTGTGCTCCA TAGCAAACAT TAGCTAAAAT TTGTCA-GCG TCTCTCTCCC AAGAATCTCG 11710 |||||||||| |||||||| | |||||||| | |||||| ||| |||| ||||| || ||||||| TTGTGCTCCA TAGCAAACGT TAGCTAAAGT TTGTCAGGCG TCTCCCTCCC AAAAATCTCG 399 CTCGCCACTC TCCATTCTCG CTCGCCTCTC TCGCTTTATA CACAAAAGTG TAT-AATTCT 11769 |||||||||| |||||||||| ||||||| || ||||| |||| |||| ||||| ||| |||||| CTCGCCACTC TCCATTCTCG CTCGCCTATC TCGCTATATA CACAGAAGTG TATAAATTCT 459 GTTTCTGTTT TGTATAAAGC GAGAGAAAAT TGTATATACA CATGCAAAAA TGTATATCTT 11829 |||||| ||| |||||||||| |||||||||| |||||||||| |||| ||||| | |||||||| GTTTCTATTT TGTATAAAGC GAGAGAAAAT TGTATATACA CATGTAAAAA TATATATCTT 519 CGTGTTATAC ACTTAATTAT ACAATTTACA AACATTTTAC TTCAAATATT GCAGAGAAAA 11889 |||||||||| |||||||||| |||| ||||| |||||||||| |||||||||| |||||||||| CGTGTTATAC ACTTAATTAT ACAAATTACA AACATTTTAC TTCAAATATT GCAGAGAAAA 579 AGGCCAACAA ATTATACAAT TGCGAATTAT ACAATTGCAG TGAAATACAA TTTTCTCTAG 11949 |||||||| | |||||||||| || ||||||| | |||||||| |||||||||| ||||||||| AGGCCAACGA ATTATACAAT TGTGAATTAT ATAATTGCAG TGAAATACAA TTTTCTCTAA 639 CTTTATACAA CAGAAGTGTA TATATTGTG- TTTCTGTTTT TGTATAAAGC GAG--AAAAA 12006 |||||||||| |||||||||| ||||||||| ||| |||||| |||||||||| ||| ||||| CTTTATACAA CAGAAGTGTA TATATTGTGN TTTTTGTTTT TGTATAAAGC GAGACAAAAA 699 CATATATCTT CTTGTTATAC ACTTATAATT ATGCAATATA CATACATTTT A 12057 ||||||| || |||| |||| |||||||||| |||||||||| |||||||||| | CATATATATT CTTGCCATAC ACTTATAATT ATGCAATATA CATACATTTT A 750 hqPGS_C06HBa0024L21.1-7+_SGN-E379112+ (11592 12057) ******************************************************************************** EST sequence 84 -strand 530 n (File: SGN-E393065-) 1 TTCACAAGCG ATAATTCTAA ATCTTTTTCC TTCTCTCCAT TTTATACAAG CTATGGGACA 61 AATTGTATAT AATAGCAAAC TAGTAATCTA ACTAAATGGA GTAGATAGAG TTAGATCTTA 121 TTGTGCTTCA TGGCAAACGT TAGCTAAAGT TGGTCAGGCG TCTGCCTCCC AAAAATCTCG 181 CTGGCCATTT TCCATTATCG CTGGCATATC TCGTTATATA CACAGAAGTG TATAGATTAT 241 GTTTATATTT TGTATAAAGC GAGAGAAAAT TGTATATACA CATGTGAAAA TATATATCTT 301 CGTGTTATAC ACTTAATTAT ACAAATTACA AACATTTTAC TTCAAATATG GCAGTGAAAA 361 AGGCCAAGGA ATTATGCAAT TGTGAATTAT ATAATTGCAG TGAAATACAA TTTTGTCTAA 421 CTTTATACAA CAGAAGTGTA TATATTGTGT TTTTGTTTTA GTATAAAGCG AGACAAAAAC 481 ATATATATTC TTGCCATGCG CTTATAATTA TGCAATATAC ATACATTTTA Predicted gene structure (within gDNA segment 7845 to 12446): Exon 1 11592 12057 ( 466 n); cDNA 62 530 ( 469 n); score: 0.865 MATCH C06HBa0024L21.1-7+ SGN-E393065- 0.865 466 0.879 C PGS_C06HBa0024L21.1-7+_SGN-E393065- (11592 12057) Alignment (genomic DNA sequence = upper lines): ATTGTATATA ATAGCAAACT AATAACTTAA ATTAAATGAA ATAGCTAGGG TTTGATTTAA 11651 |||||||||| |||||||||| | ||| | | | |||||| | ||| ||| | || ||| | | ATTGTATATA ATAGCAAACT AGTAA-TCTA ACTAAATGGA GTAGATAGAG TTAGATCTTA 120 TTGTGCTCCA TAGCAAACAT TAGCTAAAAT TTGTCA-GCG TCTCTCTCCC AAGAATCTCG 11710 ||||||| || | |||||| | |||||||| | | |||| ||| ||| ||||| || ||||||| TTGTGCTTCA TGGCAAACGT TAGCTAAAGT TGGTCAGGCG TCTGCCTCCC AAAAATCTCG 180 CTCGCCACTC TCCATTCTCG CTCGCCTCTC TCGCTTTATA CACAAAAGTG TATA-ATTCT 11769 || |||| | |||||| ||| || || | || ||| | |||| |||| ||||| |||| ||| | CTGGCCATTT TCCATTATCG CTGGCATATC TCGTTATATA CACAGAAGTG TATAGATTAT 240 GTTTCTGTTT TGTATAAAGC GAGAGAAAAT TGTATATACA CATGCAAAAA TGTATATCTT 11829 |||| | ||| |||||||||| |||||||||| |||||||||| |||| |||| | |||||||| GTTTATATTT TGTATAAAGC GAGAGAAAAT TGTATATACA CATGTGAAAA TATATATCTT 300 CGTGTTATAC ACTTAATTAT ACAATTTACA AACATTTTAC TTCAAATATT GCAGAGAAAA 11889 |||||||||| |||||||||| |||| ||||| |||||||||| ||||||||| |||| ||||| CGTGTTATAC ACTTAATTAT ACAAATTACA AACATTTTAC TTCAAATATG GCAGTGAAAA 360 AGGCCAACAA ATTATACAAT TGCGAATTAT ACAATTGCAG TGAAATACAA TTTTCTCTAG 11949 ||||||| | ||||| |||| || ||||||| | |||||||| |||||||||| |||| |||| AGGCCAAGGA ATTATGCAAT TGTGAATTAT ATAATTGCAG TGAAATACAA TTTTGTCTAA 420 CTTTATACAA CAGAAGTGTA TATATTGTGT TTCTGTTTTT GTATAAAGCG AG--AAAAAC 12007 |||||||||| |||||||||| |||||||||| || |||||| |||||||||| || |||||| CTTTATACAA CAGAAGTGTA TATATTGTGT TTTTGTTTTA GTATAAAGCG AGACAAAAAC 480 ATATATCTTC TTGTTATACA CTTATAATTA TGCAATATAC ATACATTTTA 12057 |||||| ||| ||| || | |||||||||| |||||||||| |||||||||| ATATATATTC TTGCCATGCG CTTATAATTA TGCAATATAC ATACATTTTA 530 hqPGS_C06HBa0024L21.1-7+_SGN-E393065- (11592 12057) ******************************************************************************** EST sequence 66 -strand 570 n (File: SGN-E379618-) 1 GCAAAACAAC TAAATTCTTA TTTTGCAATC TTTTCTTGTC ATTCACAAGC GATAATTCTA 61 AATCTTTTTC CTTCTCTCCA TNTTATACAA GCTCTTGGGA AAATTGTATA TAATAGCAAA 121 CTAGTAATCT AACTAAATGG AGTAGCTAGA GTTTGATTTA ATTGTGCTCC ATAGCAAACG 181 TTAGCTAAAG TTTGTCAGGC GTCTCCCTCC CAAAAATCTC GCTCGCCACT CTCCATTCTC 241 GCTCGCCTAT CTCGCTATAT ACACAGAAGT GTATAAATTC TGTTTCTATT TTGTATAAAG 301 CGAGAGAAAA TTGTATATAC ACATGTAAAA ATATATATCT TCGTGTTATA CACTTAATTA 361 TACAAATTAC AAACATTTTA CTTCAAATAT TGCAGAGAAA AAGGCCAACG AATTATACAA 421 TTGTGAATTA TATAATTGCA GTGAAATACA ATTTTCTCTA ACTTTATACA ACAGAAGTGT 481 ATATATTGTG TTTTTGTTTT TGTATAAAGC GAGACAAAAA CATATATATT CTTGCCATAC 541 ACTTATAATT ATGCAATATA CATACATTTT Predicted gene structure (within gDNA segment 8379 to 12446): Exon 1 11592 12056 ( 465 n); cDNA 103 570 ( 468 n); score: 0.920 MATCH C06HBa0024L21.1-7+ SGN-E379618- 0.920 465 0.816 C PGS_C06HBa0024L21.1-7+_SGN-E379618- (11592 12056) Alignment (genomic DNA sequence = upper lines): ATTGTATATA ATAGCAAACT AATAACTTAA ATTAAATGAA ATAGCTAGGG TTTGATTTAA 11651 |||||||||| |||||||||| | ||| | | | |||||| | ||||||| | |||||||||| ATTGTATATA ATAGCAAACT AGTAA-TCTA ACTAAATGGA GTAGCTAGAG TTTGATTTAA 161 TTGTGCTCCA TAGCAAACAT TAGCTAAAAT TTGTCA-GCG TCTCTCTCCC AAGAATCTCG 11710 |||||||||| |||||||| | |||||||| | |||||| ||| |||| ||||| || ||||||| TTGTGCTCCA TAGCAAACGT TAGCTAAAGT TTGTCAGGCG TCTCCCTCCC AAAAATCTCG 221 CTCGCCACTC TCCATTCTCG CTCGCCTCTC TCGCTTTATA CACAAAAGTG TAT-AATTCT 11769 |||||||||| |||||||||| ||||||| || ||||| |||| |||| ||||| ||| |||||| CTCGCCACTC TCCATTCTCG CTCGCCTATC TCGCTATATA CACAGAAGTG TATAAATTCT 281 GTTTCTGTTT TGTATAAAGC GAGAGAAAAT TGTATATACA CATGCAAAAA TGTATATCTT 11829 |||||| ||| |||||||||| |||||||||| |||||||||| |||| ||||| | |||||||| GTTTCTATTT TGTATAAAGC GAGAGAAAAT TGTATATACA CATGTAAAAA TATATATCTT 341 CGTGTTATAC ACTTAATTAT ACAATTTACA AACATTTTAC TTCAAATATT GCAGAGAAAA 11889 |||||||||| |||||||||| |||| ||||| |||||||||| |||||||||| |||||||||| CGTGTTATAC ACTTAATTAT ACAAATTACA AACATTTTAC TTCAAATATT GCAGAGAAAA 401 AGGCCAACAA ATTATACAAT TGCGAATTAT ACAATTGCAG TGAAATACAA TTTTCTCTAG 11949 |||||||| | |||||||||| || ||||||| | |||||||| |||||||||| ||||||||| AGGCCAACGA ATTATACAAT TGTGAATTAT ATAATTGCAG TGAAATACAA TTTTCTCTAA 461 CTTTATACAA CAGAAGTGTA TATATTGTGT TTCTGTTTTT GTATAAAGCG AG--AAAAAC 12007 |||||||||| |||||||||| |||||||||| || ||||||| |||||||||| || |||||| CTTTATACAA CAGAAGTGTA TATATTGTGT TTTTGTTTTT GTATAAAGCG AGACAAAAAC 521 ATATATCTTC TTGTTATACA CTTATAATTA TGCAATATAC ATACATTTT 12056 |||||| ||| ||| ||||| |||||||||| |||||||||| ||||||||| ATATATATTC TTGCCATACA CTTATAATTA TGCAATATAC ATACATTTT 570 hqPGS_C06HBa0024L21.1-7+_SGN-E379618- (11592 12056) ******************************************************************************** EST sequence 48 +strand 651 n (File: SGN-E394141+) 1 TTTTTTTTTT TTTTTTTTTT CTATCAATGT GATACTGGGG GAATATATAT ATATCTTTTT 61 AATGTTAATT AATCGAAATT GAGAAGCTGA AATTTCACCT ATAACATCAA GTATACACGT 121 TACCTATGCC CTGGTTGTTT ATAGCTGAAT TTCAAGCCCC TTTTCTTATT CTATTATTAC 181 ACCCCTAATG AAATGATTAA GGAACTTATT AAAGCAAAAC AACTAAATTC TTATTTTGCA 241 ATCTTTTCTT GTCATTCACA AGCGATAATT CTAAATCTTT TTCCTTCTCT CCATTTTATA 301 CAAGCTCTTG GGAAAATTGT ATATAATAGC AAACTAGTAA TCTAACTAAA TGGAGTAGCT 361 AGAGTTTGAT TTAATTGTGC TCCATAGCAA ACGTTAGCTA AAGTTTGTCA GGCGTCTCCC 421 TCCCAAAAAT CTCGCTCGCC ACTCTCCATT CTCGCTCGCC TATCTCGCTA TATACACAGA 481 AGTGTATAAA TTCTGTTTCT ATTTTGTATA AAGCGAGAGA AAATTGTATA TACACATGTA 541 AAAATATATA TCTTCGTGTT ATACACTTAA TTATACAAAT TACAAACATT TTACTTCAAA 601 TATTGCAAAG AAAAAGGCCA ACGAATTATA CAATTGTGAA TTATATAATT G Predicted gene structure (within gDNA segment 6259 to 12446): Exon 1 11592 11926 ( 335 n); cDNA 316 651 ( 336 n); score: 0.916 PPA cDNA 20 1 MATCH C06HBa0024L21.1-7+ SGN-E394141+ 0.916 335 0.515 C PGS_C06HBa0024L21.1-7+_SGN-E394141+ (11592 11926) Alignment (genomic DNA sequence = upper lines): ATTGTATATA ATAGCAAACT AATAACTTAA ATTAAATGAA ATAGCTAGGG TTTGATTTAA 11651 |||||||||| |||||||||| | ||| ||| |||||| | ||||||| | |||||||||| ATTGTATATA ATAGCAAACT AGTAATCTAA -CTAAATGGA GTAGCTAGAG TTTGATTTAA 374 TTGTGCTCCA TAGCAAACAT TAGCTAAAAT TTGTCA-GCG TCTCTCTCCC AAGAATCTCG 11710 |||||||||| |||||||| | |||||||| | |||||| ||| |||| ||||| || ||||||| TTGTGCTCCA TAGCAAACGT TAGCTAAAGT TTGTCAGGCG TCTCCCTCCC AAAAATCTCG 434 CTCGCCACTC TCCATTCTCG CTCGCCTCTC TCGCTTTATA CACAAAAGTG TAT-AATTCT 11769 |||||||||| |||||||||| ||||||| || ||||| |||| |||| ||||| ||| |||||| CTCGCCACTC TCCATTCTCG CTCGCCTATC TCGCTATATA CACAGAAGTG TATAAATTCT 494 GTTTCTGTTT TGTATAAAGC GAGAGAAAAT TGTATATACA CATGCAAAAA TGTATATCTT 11829 |||||| ||| |||||||||| |||||||||| |||||||||| |||| ||||| | |||||||| GTTTCTATTT TGTATAAAGC GAGAGAAAAT TGTATATACA CATGTAAAAA TATATATCTT 554 CGTGTTATAC ACTTAATTAT ACAATTTACA AACATTTTAC TTCAAATATT GCAGAGAAAA 11889 |||||||||| |||||||||| |||| ||||| |||||||||| |||||||||| ||| |||||| CGTGTTATAC ACTTAATTAT ACAAATTACA AACATTTTAC TTCAAATATT GCAAAGAAAA 614 AGGCCAACAA ATTATACAAT TGCGAATTAT ACAATTG 11926 |||||||| | |||||||||| || ||||||| | ||||| AGGCCAACGA ATTATACAAT TGTGAATTAT ATAATTG 651 hqPGS_C06HBa0024L21.1-7+_SGN-E394141+ (11592 11926) ******************************************************************************** EST sequence 25 +strand 605 n (File: SGN-E392605+) 1 TTTTTTTTTT TTTTTTTTTC CTATCAAATG TGATACTGTG GGAATATATA TATATATCTA 61 TAATGTTAAT TAATCGAAAT TGAGAAGCTG AAATTTCACC TATAACATCA AGTATACACG 121 TTACCTATGC CCTGGTTGTT TATAGCTGAA TTTCAAGCCC CTTTTCTTAT TCTATTATTA 181 CACCCCTAAT GAAATGATTA AGGAACTTAT TAAAGCAAAA CAACTAAATT CTTATTTTGC 241 AATCTTTTCT TGTCATTCAC AAGCGATAAT TCTAAATCTT TTTCCTTCTC TCCATTTTAT 301 ACAAGCTCTT GGGAAAATTG TATATAATAG CAAACTAGTA ATCTAACTAA ATGGAGTAGC 361 TAGAGTTTGA TTTAATTGTG CTCCATAGCA AACGTTAGCT AAAGTTTGTC AGGCGTCTCC 421 CTCCCAAAAA TCTCGCTCGC CACTCTCCAT TCTCGCTCGC CTATCTCGCT ATATACACAG 481 AAGTGTATAA ATTCTGTTTC TATTTTGTAT AAAGCGAGAG AAAATTGTAT ATACACATGT 541 AAAAATATAT ATCTTCGTGT TATACACTTA ATTATACAAA TTACAAACAT TTTACTTCAA 601 ATATT Predicted gene structure (within gDNA segment 6249 to 12446): Exon 1 11592 11879 ( 288 n); cDNA 317 605 ( 289 n); score: 0.917 PPA cDNA 19 1 MATCH C06HBa0024L21.1-7+ SGN-E392605+ 0.917 288 0.476 C PGS_C06HBa0024L21.1-7+_SGN-E392605+ (11592 11879) Alignment (genomic DNA sequence = upper lines): ATTGTATATA ATAGCAAACT AATAACTTAA ATTAAATGAA ATAGCTAGGG TTTGATTTAA 11651 |||||||||| |||||||||| | ||| ||| |||||| | ||||||| | |||||||||| ATTGTATATA ATAGCAAACT AGTAATCTAA -CTAAATGGA GTAGCTAGAG TTTGATTTAA 375 TTGTGCTCCA TAGCAAACAT TAGCTAAAAT TTGTCA-GCG TCTCTCTCCC AAGAATCTCG 11710 |||||||||| |||||||| | |||||||| | |||||| ||| |||| ||||| || ||||||| TTGTGCTCCA TAGCAAACGT TAGCTAAAGT TTGTCAGGCG TCTCCCTCCC AAAAATCTCG 435 CTCGCCACTC TCCATTCTCG CTCGCCTCTC TCGCTTTATA CACAAAAGTG TAT-AATTCT 11769 |||||||||| |||||||||| ||||||| || ||||| |||| |||| ||||| ||| |||||| CTCGCCACTC TCCATTCTCG CTCGCCTATC TCGCTATATA CACAGAAGTG TATAAATTCT 495 GTTTCTGTTT TGTATAAAGC GAGAGAAAAT TGTATATACA CATGCAAAAA TGTATATCTT 11829 |||||| ||| |||||||||| |||||||||| |||||||||| |||| ||||| | |||||||| GTTTCTATTT TGTATAAAGC GAGAGAAAAT TGTATATACA CATGTAAAAA TATATATCTT 555 CGTGTTATAC ACTTAATTAT ACAATTTACA AACATTTTAC TTCAAATATT 11879 |||||||||| |||||||||| |||| ||||| |||||||||| |||||||||| CGTGTTATAC ACTTAATTAT ACAAATTACA AACATTTTAC TTCAAATATT 605 hqPGS_C06HBa0024L21.1-7+_SGN-E392605+ (11592 11879) ******************************************************************************** EST sequence 112 -strand 450 n (File: SGN-E200845-) 1 CTAGTAATCT AACTAAATGG AGTAGCTAGA GTTTGATTTA ATTGTGCTCC ATAGCAAACG 61 TTAGCTAAAG TTTGTCAGGC GTCTCCCTCC CAAAAATCTC GCTCGCCACT CTCCATTCTC 121 GCTCGCCTAT CTCGCTATAT ACACAGAAGT GTATAAATTC TGTTTCTATT TTGTATAAAG 181 CGAGAGAAAA TTGTATATAC ACATGTAAAA ATATATATCT TCGTGTTATA CACTTAATTA 241 TACAAATTAC AAACATTTTA CTTCAAATAT TGCAGAGAAA AAGGCCAACG AATTATACAA 301 TTGTGAATTA TATAATTGCA GTGAAATACA ATTTTCTCTA ACTTTATACA ACAGAAGTGT 361 ATATATTGTG TTTTTGTTTT TGTATAAAGC GAGACAAAAA CATATATATT CTTGCCATAC 421 ACTTATAATT ATGCAATATA CATACATTTT Predicted gene structure (within gDNA segment 9579 to 12446): Exon 1 11610 12056 ( 447 n); cDNA 1 450 ( 450 n); score: 0.917 MATCH C06HBa0024L21.1-7+ SGN-E200845- 0.917 447 0.993 C PGS_C06HBa0024L21.1-7+_SGN-E200845- (11610 12056) Alignment (genomic DNA sequence = upper lines): CTAATAACTT AAATTAAATG AAATAGCTAG GGTTTGATTT AATTGTGCTC CATAGCAAAC 11669 ||| ||| | || |||||| | ||||||| ||||||||| |||||||||| |||||||||| CTAGTAA-TC TAACTAAATG GAGTAGCTAG AGTTTGATTT AATTGTGCTC CATAGCAAAC 59 ATTAGCTAAA ATTTGTCA-G CGTCTCTCTC CCAAGAATCT CGCTCGCCAC TCTCCATTCT 11728 ||||||||| ||||||| | |||||| ||| |||| ||||| |||||||||| |||||||||| GTTAGCTAAA GTTTGTCAGG CGTCTCCCTC CCAAAAATCT CGCTCGCCAC TCTCCATTCT 119 CGCTCGCCTC TCTCGCTTTA TACACAAAAG TGTAT-AATT CTGTTTCTGT TTTGTATAAA 11787 ||||||||| ||||||| || |||||| ||| ||||| |||| |||||||| | |||||||||| CGCTCGCCTA TCTCGCTATA TACACAGAAG TGTATAAATT CTGTTTCTAT TTTGTATAAA 179 GCGAGAGAAA ATTGTATATA CACATGCAAA AATGTATATC TTCGTGTTAT ACACTTAATT 11847 |||||||||| |||||||||| |||||| ||| ||| |||||| |||||||||| |||||||||| GCGAGAGAAA ATTGTATATA CACATGTAAA AATATATATC TTCGTGTTAT ACACTTAATT 239 ATACAATTTA CAAACATTTT ACTTCAAATA TTGCAGAGAA AAAGGCCAAC AAATTATACA 11907 |||||| ||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| ATACAAATTA CAAACATTTT ACTTCAAATA TTGCAGAGAA AAAGGCCAAC GAATTATACA 299 ATTGCGAATT ATACAATTGC AGTGAAATAC AATTTTCTCT AGCTTTATAC AACAGAAGTG 11967 |||| ||||| ||| |||||| |||||||||| |||||||||| | |||||||| |||||||||| ATTGTGAATT ATATAATTGC AGTGAAATAC AATTTTCTCT AACTTTATAC AACAGAAGTG 359 TATATATTGT GTTTCTGTTT TTGTATAAAG CGAG--AAAA ACATATATCT TCTTGTTATA 12025 |||||||||| |||| ||||| |||||||||| |||| |||| |||||||| | ||||| ||| TATATATTGT GTTTTTGTTT TTGTATAAAG CGAGACAAAA ACATATATAT TCTTGCCATA 419 CACTTATAAT TATGCAATAT ACATACATTT T 12056 |||||||||| |||||||||| |||||||||| | CACTTATAAT TATGCAATAT ACATACATTT T 450 hqPGS_C06HBa0024L21.1-7+_SGN-E200845- (11610 12056) ******************************************************************************** EST sequence 89 -strand 325 n (File: SGN-E393076-) 1 CTATCTCGCT ATATACACAA AAAAAAATAA ATTCTGTTTT TATTTTGTAT AAAGCGAGAG 61 AAAATTGTAT ATACACATGT AAAAATATAT ATCTTCGTGT TATACACTTA ATTATACAAA 121 TTACAAACAT TTTACTTCAA ATATTGCAGA GAAAAAGGCC AACGAATTAT ACAATTGTGA 181 ATTATATAAT TGCAGTGAAA TACAATTTTC TCTAACTTTA TACAACAGAA GTGTATATAT 241 TGTGTTTTTG TTTTTGTATA AAGCGAGACA AAAACATATA TATTCTTGCC ATACACTTAT 301 AATTATGCAA TATACATACA TTTTA Predicted gene structure (within gDNA segment 10747 to 12446): Exon 1 11736 12057 ( 322 n); cDNA 1 325 ( 325 n); score: 0.918 MATCH C06HBa0024L21.1-7+ SGN-E393076- 0.918 322 0.991 C PGS_C06HBa0024L21.1-7+_SGN-E393076- (11736 12057) Alignment (genomic DNA sequence = upper lines): CTCTCTCGCT TTATACACAA AAGTGTAT-A ATTCTGTTTC TGTTTTGTAT AAAGCGAGAG 11794 || ||||||| ||||||||| || || | ||||||||| | |||||||| |||||||||| CTATCTCGCT ATATACACAA AAAAAAATAA ATTCTGTTTT TATTTTGTAT AAAGCGAGAG 60 AAAATTGTAT ATACACATGC AAAAATGTAT ATCTTCGTGT TATACACTTA ATTATACAAT 11854 |||||||||| ||||||||| |||||| ||| |||||||||| |||||||||| ||||||||| AAAATTGTAT ATACACATGT AAAAATATAT ATCTTCGTGT TATACACTTA ATTATACAAA 120 TTACAAACAT TTTACTTCAA ATATTGCAGA GAAAAAGGCC AACAAATTAT ACAATTGCGA 11914 |||||||||| |||||||||| |||||||||| |||||||||| ||| |||||| ||||||| || TTACAAACAT TTTACTTCAA ATATTGCAGA GAAAAAGGCC AACGAATTAT ACAATTGTGA 180 ATTATACAAT TGCAGTGAAA TACAATTTTC TCTAGCTTTA TACAACAGAA GTGTATATAT 11974 |||||| ||| |||||||||| |||||||||| |||| ||||| |||||||||| |||||||||| ATTATATAAT TGCAGTGAAA TACAATTTTC TCTAACTTTA TACAACAGAA GTGTATATAT 240 TGTGTTTCTG TTTTTGTATA AAGCGAG--A AAAACATATA TCTTCTTGTT ATACACTTAT 12032 ||||||| || |||||||||| ||||||| | |||||||||| | |||||| |||||||||| TGTGTTTTTG TTTTTGTATA AAGCGAGACA AAAACATATA TATTCTTGCC ATACACTTAT 300 AATTATGCAA TATACATACA TTTTA 12057 |||||||||| |||||||||| ||||| AATTATGCAA TATACATACA TTTTA 325 hqPGS_C06HBa0024L21.1-7+_SGN-E393076- (11736 12057) ******************************************************************************** EST sequence 87 -strand 308 n (File: SGN-E393075-) 1 AAAAAAAAAA AAACCTCTGT TTCTATTTTG TATAAAGCGA GAGAAAATTG TATATACACA 61 TGTAAAAATA TATATCTTCG TGTTATACAC TTAATTATAC AAATTACAAA CATTTTACTT 121 CAAATATTGC AGAGAAAAAG GCCAACGAAT TATACAATTG TGAATTATAT AATTGCAGTG 181 AAATACAATT TTCTCTAACT TTATACAACA GAAGTGTATA TATTGTGTTT TTGTTTTTGT 241 ATAAAGCGAG ACAAAAACAT ATATATTCTT GCCATACACT TATAATTATG CAATATACAT 301 ACATTTTA Predicted gene structure (within gDNA segment 10917 to 12446): Exon 1 11754 12057 ( 304 n); cDNA 3 308 ( 306 n); score: 0.921 MATCH C06HBa0024L21.1-7+ SGN-E393075- 0.921 304 0.987 C PGS_C06HBa0024L21.1-7+_SGN-E393075- (11754 12057) Alignment (genomic DNA sequence = upper lines): AAAAGTGTAT AATTCTGTTT CTGTTTTGTA TAAAGCGAGA GAAAATTGTA TATACACATG 11813 |||| | | ||||||| || ||||||| |||||||||| |||||||||| |||||||||| AAAAAAAAAA ACCTCTGTTT CTATTTTGTA TAAAGCGAGA GAAAATTGTA TATACACATG 62 CAAAAATGTA TATCTTCGTG TTATACACTT AATTATACAA TTTACAAACA TTTTACTTCA 11873 |||||| || |||||||||| |||||||||| |||||||||| ||||||||| |||||||||| TAAAAATATA TATCTTCGTG TTATACACTT AATTATACAA ATTACAAACA TTTTACTTCA 122 AATATTGCAG AGAAAAAGGC CAACAAATTA TACAATTGCG AATTATACAA TTGCAGTGAA 11933 |||||||||| |||||||||| |||| ||||| |||||||| | ||||||| || |||||||||| AATATTGCAG AGAAAAAGGC CAACGAATTA TACAATTGTG AATTATATAA TTGCAGTGAA 182 ATACAATTTT CTCTAGCTTT ATACAACAGA AGTGTATATA TTGTGTTTCT GTTTTTGTAT 11993 |||||||||| ||||| |||| |||||||||| |||||||||| |||||||| | |||||||||| ATACAATTTT CTCTAACTTT ATACAACAGA AGTGTATATA TTGTGTTTTT GTTTTTGTAT 242 AAAGCGAG-- AAAAACATAT ATCTTCTTGT TATACACTTA TAATTATGCA ATATACATAC 12051 |||||||| |||||||||| || |||||| ||||||||| |||||||||| |||||||||| AAAGCGAGAC AAAAACATAT ATATTCTTGC CATACACTTA TAATTATGCA ATATACATAC 302 ATTTTA 12057 |||||| ATTTTA 308 hqPGS_C06HBa0024L21.1-7+_SGN-E393075- (11754 12057) ******************************************************************************** EST sequence 91 -strand 153 n (File: SGN-E392727-) 1 AATTGTGAAT TATATAATTG CAGTGAAATA CAATTTTCTC TAACTTTATA CAACAGAAGT 61 GTATATATTG TGTTTTAAAT TTTGTATAAA GCGTGACAAA AACATATATA TTCTTGCCAT 121 ACACTTATAA TTATGCAATA TACATACATA TTA Predicted gene structure (within gDNA segment 11162 to 12446): Exon 1 11907 12057 ( 151 n); cDNA 1 153 ( 153 n); score: 0.887 MATCH C06HBa0024L21.1-7+ SGN-E392727- 0.887 151 0.987 C PGS_C06HBa0024L21.1-7+_SGN-E392727- (11907 12057) Alignment (genomic DNA sequence = upper lines): AATTGCGAAT TATACAATTG CAGTGAAATA CAATTTTCTC TAGCTTTATA CAACAGAAGT 11966 ||||| |||| |||| ||||| |||||||||| |||||||||| || ||||||| |||||||||| AATTGTGAAT TATATAATTG CAGTGAAATA CAATTTTCTC TAACTTTATA CAACAGAAGT 60 GTATATATTG TGTTTCTGTT TTTGTATAAA GCGAGA--AA AACATATATC TTCTTGTTAT 12024 |||||||||| ||||| | |||||||||| ||| || || ||||||||| |||||| || GTATATATTG TGTTTTAAAT TTTGTATAAA GCGTGACAAA AACATATATA TTCTTGCCAT 120 ACACTTATAA TTATGCAATA TACATACATT TTA 12057 |||||||||| |||||||||| ||||||||| ||| ACACTTATAA TTATGCAATA TACATACATA TTA 153 hqPGS_C06HBa0024L21.1-7+_SGN-E392727- (11907 12057) ******************************************************************************** EST sequence 11 +strand 680 n (File: SGN-E379333+) 1 AATTTAGGCC AGCGAATTAT ACAATTGTAT ATGTATAGCA AATTATACAG TTTTATGTTT 61 GCTATGCAGC GCAATTATGC AAAGTTTGCT AGCATACAAA TATGAATTTT TTATTTGCTA 121 TATGTAAAAG TTGCCCAATA ATGTATCATG GACATATGAA AATAGTTCTT CCAAAATCAG 181 TTTATCTCCG AGTTAATACT TTAGATGGTC ATTCAACTAA TCTTTGTGCT CAAAACCCCG 241 ATTCAAATAG TCATTTGTTT GGTATCGCCG AAGGAGCGGG AACGGTCATT CTAACTCTTC 301 TCGGGGGATT CCACCCATAC TTTCTCTCAA AAAGTCACTC AACTTTCAAT TTTTCCTTAA 361 AAGTATTCAA TTATCCATAC ATTTCTCAAA AAGTGACTCA ACTTTGAATT TTAACTCAAA 421 AGTGACTCAA CTATTTATTT TTTCCTCAAG TCACTCAATC TATTAAATTA CTTTTTAAAT 481 TAAAATTTAT TTACGTTAAT TGTTTATATA ACAAATCAAA ATTTTTTAAA AAAATAAAAA 541 ATACTATTTA GTGATCCACC CACCTAACCC GACCCATTAA AAAATATAAT ATGAACCATT 601 TTATTTTACC CTTAATTCTA AATTATTCCC TCTCTTTCTC CTCTACATTT AATATATACA 661 CATAGCTTAT TTAATTCGAT Predicted gene structure (within gDNA segment 11544 to 12446): Exon 1 12144 12294 ( 151 n); cDNA 1 149 ( 149 n); score: 0.947 MATCH C06HBa0024L21.1-7+ SGN-E379333+ 0.947 151 0.222 C PGS_C06HBa0024L21.1-7+_SGN-E379333+ (12144 12294) Alignment (genomic DNA sequence = upper lines): AATTTAGGCC AGCGAATTAT ACAATTGTAT ATGTATAGCA AATTATACAG TTTTATGTTT 12203 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATTTAGGCC AGCGAATTAT ACAATTGTAT ATGTATAGCA AATTATACAG TTTTATGTTT 60 GCTATGTAGC GTAATTATGC AAAGTTTGCT ATAGCATACA AATATGAATT TTTTATTTGC 12263 |||||| ||| | |||||||| ||||||||| ||||||||| |||||||||| |||||||||| GCTATGCAGC GCAATTATGC AAAGTTTGC- -TAGCATACA AATATGAATT TTTTATTTGC 118 TATATGTGAA AGTTGCCCAT TAATATATAA T 12294 ||||||| || ||||||||| |||| ||| | | TATATGTAAA AGTTGCCCAA TAATGTATCA T 149 hqPGS_C06HBa0024L21.1-7+_SGN-E379333+ (12144 12294) ******************************************************************************** EST sequence 30 +strand 372 n (File: SGN-E200682+) 1 AATTTAGGCC AGCGAATTAT ACAATTGTAT ATGTATAGCA AATTATACAG TTTTATGTTT 61 GCTATGCAGC GCAATTATGC AAAGTTTGCT AGCATACAAA TATGAATTTT TTATTTGCTA 121 TATGTAAAAG TTGCCCAATA ATGTATCATG GACATATGAA AATAGTTCTT CCAAAATCAG 181 TTTATCTCCG AGTTAATACT TTAGATGGTC ATTCAACTAA TCTTTGTGCT CAAAACCCCG 241 ATTCAAATAG TCATTTGTTT GGTATCGCCG AAGGAGCGGG AACGGTCATT CTAACTCTTC 301 TCGGGGGATT CCACCCATAC TTTCTCTCAA AAAGTCACTC AACTTTCAAT TTTTCCTTAA 361 AAGTATTCAA TT Predicted gene structure (within gDNA segment 11544 to 12446): Exon 1 12144 12294 ( 151 n); cDNA 1 149 ( 149 n); score: 0.947 MATCH C06HBa0024L21.1-7+ SGN-E200682+ 0.947 151 0.406 C PGS_C06HBa0024L21.1-7+_SGN-E200682+ (12144 12294) Alignment (genomic DNA sequence = upper lines): AATTTAGGCC AGCGAATTAT ACAATTGTAT ATGTATAGCA AATTATACAG TTTTATGTTT 12203 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATTTAGGCC AGCGAATTAT ACAATTGTAT ATGTATAGCA AATTATACAG TTTTATGTTT 60 GCTATGTAGC GTAATTATGC AAAGTTTGCT ATAGCATACA AATATGAATT TTTTATTTGC 12263 |||||| ||| | |||||||| ||||||||| ||||||||| |||||||||| |||||||||| GCTATGCAGC GCAATTATGC AAAGTTTGC- -TAGCATACA AATATGAATT TTTTATTTGC 118 TATATGTGAA AGTTGCCCAT TAATATATAA T 12294 ||||||| || ||||||||| |||| ||| | | TATATGTAAA AGTTGCCCAA TAATGTATCA T 149 hqPGS_C06HBa0024L21.1-7+_SGN-E200682+ (12144 12294) Total number of EST alignments reported: 111 ________________________________________________________________________________ Predicted gene locations (4) in segment 1 to 12446: PGL 1 (- strand): 6894 3217 AGS-1 (4457 4413,4379 4226,4192 4151,4113 3217) SCR (e 0.856 d 0.000 a 0.486,e 0.666 d 0.000 a 0.000,e 0.976 d 0.000 a 0.000,e 0.826) Exon 1 4457 4413 ( 45 n); score: 0.856 Intron 1 4412 4380 ( 33 n); Pd: 0.000 Pa: 0.486 Exon 2 4379 4226 ( 154 n); score: 0.666 Intron 2 4225 4193 ( 33 n); Pd: 0.000 Pa: 0.000 Exon 3 4192 4151 ( 42 n); score: 0.976 Intron 3 4150 4114 ( 37 n); Pd: 0.000 Pa: 0.000 Exon 4 4113 3217 ( 897 n); score: 0.826 PGS (3682 3217) SGN-E351546+ PGS (3682 3217) SGN-E356206+ PGS (3682 3217) SGN-E356696+ PGS (3603 3218) SGN-E542084- PGS (3601 3219) SGN-E392027- PGS (4055 3336) SGN-E546506- PGS (3600 3336) SGN-E336814+ PGS (3598 3336) SGN-E373117+ PGS (3598 3336) SGN-E373116- PGS (3552 3336) SGN-E298638+ PGS (3528 3336) SGN-E352844+ PGS (3528 3355) SGN-E368629+ PGS (3528 3361) SGN-E238551+ PGS (3611 3365) SGN-E222578- PGS (3914 3508) SGN-E246710+ PGS (3842 3607) SGN-E209683+ PGS (3914 3660) SGN-E357033- PGS (4457 4413,4379 4226,4192 4151,4113 3664) SGN-E349977+ PGS (3914 3749) SGN-E391780+ 3-phase translation of AGS-1 (-strand): . . . . . : . 4457 CATGATGAAGTTATTGAAACCCAAATCTTGAAAAATCCTAATCTC : GCGTGATGAACTAAA H D E V I E T Q I L K N P N L : A - - T K M M K L L K P K S - K I L I S : R D E L K - - S Y - N P N L E K S - S : R V M N - . . . . . . 4364 ACTATGAGATTGATGATGTCTTGGTAAGAAAGAAGGCTTGATGAATTGATAGAAGGAGAT T M R L M M S W - E R R L D E L I E G D L - D - - C L G K K E G L M N - - K E I N Y E I D D V L V R K K A - - I D R R R . . . . . . 4304 TAGGGGATCGGGTGCCACGTTCCGGTACCAGGATAGTATATGAGGATCGGAGTGTCACGT - G I G C H V P V P G - Y M R I G V S R R G S G A T F R Y Q D S I - G S E C H V L G D R V P R S G T R I V Y E D R S V T . . : . . . . 4244 TCCGACACCAGGATAGAAT : GAATATGAGGATCGGAGTGTCACGTTCCGACACTAGGATAG S D T R I E : - I - G S E C H V P T L G - P T P G - N : E Y E D R S V T F R H - D R F R H Q D R M : N M R I G V S R S D T R I . : . . . . . 4151 A : ATATGAGGATCGGAGTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGCCACG : N M R I G V S R S D T R I E Y G S G A T : I - G S E C H V P T P G - N M D R V P R E : Y E D R S V T F R H Q D R I W I G C H . . . . . . 4054 TTCCGGTACCAGGATAGTATATGAGGATCGGAGTGTCACGTTCCGACACCAGAATAGAAT F R Y Q D S I - G S E C H V P T P E - N S G T R I V Y E D R S V T F R H Q N R I V P V P G - Y M R I G V S R S D T R I E . . . . . . 3994 ATGGATCGGGTGCCACGTTCGGTACCAGGATAGTATATGAGGATCGGGTGCCACGTTCCG M D R V P R S V P G - Y M R I G C H V P W I G C H V R Y Q D S I - G S G A T F R Y G S G A T F G T R I V Y E D R V P R S . . . . . . 3934 GTACCAGGATAGTATATGAGGAGCGGAGTGTCACGTACCGACACGAGAGGAATAAAGATA V P G - Y M R S G V S R T D T R G I K I Y Q D S I - G A E C H V P T R E E - R - G T R I V Y E E R S V T Y R H E R N K D . . . . . . 3874 ATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACCTAAATCCCAAATGAGTATG M N L E R C - Y T Q S N E P K S Q M S M - I L K D V N I L N L M N L N P K - V - N E S - K M L I Y S I - - T - I P N E Y . . . . . . 3814 ATGAGGAGGCGTGAGTCCTCATTGATGAGCTTGGTGTTGTAACCAAGGGTTATGGTAATT M R R R E S S L M S L V L - P R V M V I - G G V S P H - - A W C C N Q G L W - L D E E A - V L I D E L G V V T K G Y G N . . . . . . 3754 GTAAATGCTACATGTTGAGTATCATAGTTGATTTTATGATATTACTTGGTATATACTGTT V N A T C - V S - L I L - Y Y L V Y T V - M L H V E Y H S - F Y D I T W Y I L F C K C Y M L S I I V D F M I L L G I Y C . . . . . . 3694 TTCTATTTTGAGTTGGCCGATGATACCTACTCAGTACTTGTGTTTGTACCGACCCCCTAC F Y F E L A D D T Y S V L V F V P T P Y S I L S W P M I P T Q Y L C L Y R P P T F L F - V G R - Y L L S T C V C T D P L . . . . . . 3634 TTTTATGTTTTCTTTTTTGTTATTTGTGGAGTGCAGCAAACGTGTCATCGTCTTCAACTC F Y V F F F V I C G V Q Q T C H R L Q L F M F S F L L F V E C S K R V I V F N S L L C F L F C Y L W S A A N V S S S S T . . . . . . 3574 AACCGCAACTCTAGCCAGTCTCCATTATTTCGGATATCAGGGTGAGCTAATGCTTCTAGC N R N S S Q S P L F R I S G - A N A S S T A T L A S L H Y F G Y Q G E L M L L A Q P Q L - P V S I I S D I R V S - C F - . . . . . . 3514 TTGGACTGGATCTTCCTCTTCATGTCTTGATGCCTTGAAGTTCCGGCATGGACTAGCTTT L D W I F L F M S - C L E V P A W T S F W T G S S S S C L D A L K F R H G L A F L G L D L P L H V L M P - S S G M D - L . . . . . . 3454 TACTTGTTTTAGCTTTTTAGAATACTCTTAGTTTAGTACTTTGATCATAGATGTTCTTGT Y L F - L F R I L L V - Y F D H R C S C T C F S F L E Y S - F S T L I I D V L V L L V L A F - N T L S L V L - S - M F L . . . . . . 3394 GATGATGACTTCCAGATTTTGGGGATAATAATAGTTATTGATTTTATTAATGAGTTTAAG D D D F Q I L G I I I V I D F I N E F K M M T S R F W G - - - L L I L L M S L S - - - L P D F G D N N S Y - F Y - - V - . . . . . . 3334 TCTTCCGCATTACTTTCTGTTGATATTATATTGAAATGTTAAGGTTTAGATTGGTTGGTT S S A L L S V D I I L K C - G L D W L V L P H Y F L L I L Y - N V K V - I G W F V F R I T F C - Y Y I E M L R F R L V G . . . . . . 3274 CACTCACACAGGAGGGTAAGTGTGGGTGCCAGTCGCAGCCCGATTTGGGTCGTGACAA H S H R R V S V G A S R S P I W V V T T H T G G - V W V P V A A R F G S - Q S L T Q E G K C G C Q S Q P D L G R D Maximal non-overlapping open reading frames (>= 64 codons): >C06HBa0024L21.1-7-_PGL-1_AGS-1_PPS_1 (3723 3424) (frame '2'; 297 bp, 99 residues) 1 FYDITWYILF SILSWPMIPT QYLCLYRPPT FMFSFLLFVE CSKRVIVFNS TATLASLHYF 61 GYQGELMLLA WTGSSSSCLD ALKFRHGLAF TCFSFLEYS- >C06HBa0024L21.1-7-_PGL-1_AGS-1_PPS_2 (4320 4226,4192 4151,4113 4038) (frame '0'; 210 bp, 70 residues) 1 IDRRRLGDRV PRSGTRIVYE DRSVTFRHQD RMNMRIGVSR SDTRIEYEDR SVTFRHQDRI 61 WIGCHVPVPG - AGS-2 (5801 4160,3966 3346,3263 3257) SCR (e 0.790 d 0.000 a 0.000,e 0.813 d 0.000 a 0.976,e 0.714) Exon 1 5801 4160 (1642 n); score: 0.790 Intron 1 4159 3967 ( 193 n); Pd: 0.000 Pa: 0.000 Exon 2 3966 3346 ( 621 n); score: 0.813 Intron 2 3345 3264 ( 82 n); Pd: 0.000 Pa: 0.976 Exon 3 3263 3257 ( 7 n); score: 0.714 PGS (3600 3346,3263 3257) SGN-E370357- PGS (4360 4160,3966 3472) SGN-E241789- PGS (4609 4287) SGN-E357559+ PGS (4717 4347) SGN-E578076+ PGS (5161 4525) SGN-E349296+ PGS (5206 4659) SGN-E550322- PGS (5206 4668) SGN-E390013- PGS (5206 4668) SGN-E550211- PGS (5206 4668) SGN-E550025- PGS (5206 4668) SGN-E550212- PGS (5206 4668) SGN-E550065- PGS (5206 4668) SGN-E550201- PGS (5206 4668) SGN-E550207- PGS (5206 4668) SGN-E550335- PGS (5206 4668) SGN-E389834- PGS (5206 4668) SGN-E550484- PGS (5206 4668) SGN-E550464- PGS (5206 4668) SGN-E549941- PGS (5206 4668) SGN-E396039- PGS (5206 4668) SGN-E396054- PGS (5206 4668) SGN-E396056- PGS (5206 4668) SGN-E396058- PGS (5206 4668) SGN-E550127+ PGS (5206 4668) SGN-E550140+ PGS (5206 4668) SGN-E389553+ PGS (5104 4668) SGN-E396070- PGS (5206 4669) SGN-E231589- PGS (5206 4669) SGN-E374999- PGS (5206 4669) SGN-E377133- PGS (5196 4669) SGN-E241959- PGS (5123 4669) SGN-E236652- PGS (5206 4704) SGN-E396057+ PGS (5206 4720) SGN-E377132+ PGS (5206 4736) SGN-E396055+ PGS (5206 4738) SGN-E398551+ PGS (5206 4748) SGN-E396038+ PGS (4939 4782) SGN-E396037- PGS (5460 4901) SGN-E252199+ PGS (5206 4925) SGN-E374998+ PGS (5206 4925) SGN-E396069+ PGS (5801 5042) SGN-E354383+ PGS (5217 5093) SGN-E275667+ 3-phase translation of AGS-2 (-strand): . . . . . . 5801 GATTCATTAGAGAAGGTGAAATCTATTCAAGAAAAGCTCTTAGCGGCTCAAAGCAGGCAA D S L E K V K S I Q E K L L A A Q S R Q I H - R R - N L F K K S S - R L K A G K F I R E G E I Y S R K A L S G S K Q A . . . . . . 5741 AAGGAATATGCAGATCGAAAGGTTAGAGACTTGGAGTTCATGGAGGGTGAGCAAGTCTTG K E Y A D R K V R D L E F M E G E Q V L R N M Q I E R L E T W S S W R V S K S C K G I C R S K G - R L G V H G G - A S L . . . . . . 5681 CTGAAGGTTTCGCCCATGAAAGGGGTGATGCGGTTTGGAAAAAGAGGTAAGCTAAGCCCA L K V S P M K G V M R F G K R G K L S P - R F R P - K G - C G L E K E V S - A Q A E G F A H E R G D A V W K K R - A K P . . . . . . 5621 AGGTATATTGGACCATTTAAAGTACTTAAGCGAGTAGGGGAGGTGGCTTATGAATTAGTC R Y I G P F K V L K R V G E V A Y E L V G I L D H L K Y L S E - G R W L M N - S K V Y W T I - S T - A S R G G G L - I S . . . . . . 5561 TTGCCCCCAGGACTGTCAGGAGTGCATCCGGTATTTCATGTGTCTATGTTGAAAAGATAC L P P G L S G V H P V F H V S M L K R Y C P Q D C Q E C I R Y F M C L C - K D T L A P R T V R S A S G I S C V Y V E K I . . . . . . 5501 CATGGGGTGAAAACTACATCATTCGTTGGGATTCGGTTCTTCTTGATGAGAATTTGACTT H G V K T T S F V G I R F F L M R I - L M G - K L H H S L G F G S S - - E F D L P W G E N Y I I R W D S V L L D E N L T . . . . . . 5441 ATGAGGAGAAGCCTGTTGCCATTCTAAATAGAGAAATTCGCAAGTTGAGATCAATGGAGA M R R S L L P F - I E K F A S - D Q W R - G E A C C H S K - R N S Q V E I N G D Y E E K P V A I L N R E I R K L R S M E . . . . . . 5381 TTGCATCTATCAAAGTTCAATGGAAGAATCGACCAGTTGAATAGTCCACTTGGGAGAAGG L H L S K F N G R I D Q L N S P L G R R C I Y Q S S M E E S T S - I V H L G E G I A S I K V Q W K N R P V E - S T W E K . . . . . . 5321 AGGCTGATATGCGAGAAAGATACCCACACCTGTTTACAGATTCAGGTACTCATTTTCGCC R L I C E K D T H T C L Q I Q V L I F A G - Y A R K I P T P V Y R F R Y S F S P E A D M R E R Y P H L F T D S G T H F R . . . . . . 5261 CTTGTATCCTTCTTATGATCGTTCGGGGACGAACGATGGGTAAATTGGTATCTATTGTAA L V S F L - S F G D E R W V N W Y L L - L Y P S Y D R S G T N D G - I G I Y C N P C I L L M I V R G R T M G K L V S I V . . . . . . 5201 CGACCTGTTTAGTCGTTTTGAGCAGCAGATTTTATTTCTGGAAAAACAGGCTGAGACGAC R P V - S F - A A D F I S G K T G - D D D L F S R F E Q Q I L F L E K Q A E T T T T C L V V L S S R F Y F W K N R L R R . . . . . . 5141 GGAACCTACGACGGACCGTCATGAGTACGACGGACCGTCGAGGGGTCTCGTTTCAAAACA G T Y D G P S - V R R T V E G S R F K T E P T T D R H E Y D G P S R G L V S K H R N L R R T V M S T T D R R G V S F Q N . . . . . . 5081 CTTAGAAATTTTGAAATTGGGTACTGAAAATCGACTCTCTGAACTTCGTAACGGAATGGC L R N F E I G Y - K S T L - T S - R N G L E I L K L G T E N R L S E L R N G M A T - K F - N W V L K I D S L N F V T E W . . . . . . 5021 AGGACGGACCGTCACGGGCGTGACGGACCGTCACAGACTCTTTGGTGGAAATTGAGTCTC R T D R H G R D G P S Q T L W W K L S L G R T V T G V T D R H R L F G G N - V S Q D G P S R A - R T V T D S L V E I E S . . . . . . 4961 TGAACCTTGCGATGACCTGCAGGACGGGCCGTCACAGGTTGCGTAATCCCAGTCTGGGTC - T L R - P A G R A V T G C V I P V W V E P C D D L Q D G P S Q V A - S Q S G S L N L A M T C R T G R H R L R N P S L G . . . . . . 4901 GGATTTCTGTTAAGTAATTTAAGGGGTGTTTTGGACTATTCCAGCTTTATTTATAAAGTT G F L L S N L R G V L D Y S S F I Y K V D F C - V I - G V F W T I P A L F I K L R I S V K - F K G C F G L F Q L Y L - S . . . . . . 4841 AGTGGGTTTATGTTAATAAGTCTAATTACTTGGGTGTTAAAAGAGGTAACCTTGAGTAAA S G F M L I S L I T W V L K E V T L S K V G L C - - V - L L G C - K R - P - V N - W V Y V N K S N Y L G V K R G N L E - . . . . . . 4781 TTAGTGGGTTATTATTGCCATCTTTTATTCTTAATTATATGCTAATTAGGGTAAAAGAAG L V G Y Y C H L L F L I I C - L G - K K - W V I I A I F Y S - L Y A N - G K R R I S G L L L P S F I L N Y M L I R V K E . . . . . . 4721 GAGGGTTTGAATAAGAAAAAGAAAAGAACAGAAAGAGAGAGAAGGAGAATCGATAGAGAG E G L N K K K K R T E R E R R R I D R E R V - I R K R K E Q K E R E G E S I E R G G F E - E K E K N R K R E K E N R - R . . . . . . 4661 AGATGAACGAAGAGGAAAAACACAAGGCTTTGGGAAATTCTTGCTTGATCACTAGTCTTC R - T K R K N T R L W E I L A - S L V F D E R R G K T Q G F G K F L L D H - S S E M N E E E K H K A L G N S C L I T S L . . . . . . 4601 GGTGGAGGTAGGTTATGGTTTCTCTTACGATATTCGTAGTAAACTCTTAATACCGAATGA G G G R L W F L L R Y S - - T L N T E - V E V G Y G F S Y D I R S K L L I P N D R W R - V M V S L T I F V V N S - Y R M . . . . . . 4541 TATGTATTGATAATATTGTAAACCCTGCTATGTGCTTACTTGTATGCTTGCATGAATGTA Y V L I I L - T L L C A Y L Y A C M N V M Y - - Y C K P C Y V L T C M L A - M - I C I D N I V N P A M C L L V C L H E C . . . . . . 4481 ATTATATAATTGTGATTATATAAGCATGATGAAGTTATTGAAACCCAAATCTTGAAAAAT I I - L - L Y K H D E V I E T Q I L K N L Y N C D Y I S M M K L L K P K S - K I N Y I I V I I - A - - S Y - N P N L E K . . . . . . 4421 CCTAATCTCTTTGTTAATAATGAGGCCTTGGTATAAAAGAAGGCGTGATGAACTAAAACT P N L F V N N E A L V - K K A - - T K T L I S L L I M R P W Y K R R R D E L K L S - S L C - - - G L G I K E G V M N - N . . . . . . 4361 ATGAGATTGATGATGTCTTGGTAAGAAAGAAGGCTTGATGAATTGATAGAAGGAGATTAG M R L M M S W - E R R L D E L I E G D - - D - - C L G K K E G L M N - - K E I R Y E I D D V L V R K K A - - I D R R R L . . . . . . 4301 GGGATCGGGTGCCACGTTCCGGTACCAGGATAGTATATGAGGATCGGAGTGTCACGTTCC G I G C H V P V P G - Y M R I G V S R S G S G A T F R Y Q D S I - G S E C H V P G D R V P R S G T R I V Y E D R S V T F . . . . . . 4241 GACACCAGGATAGAATATGGATCGGGTGCCACGTTTCGGTACCAAGATAGAATATGAGGA D T R I E Y G S G A T F R Y Q D R I - G T P G - N M D R V P R F G T K I E Y E D R H Q D R I W I G C H V S V P R - N M R . . . : . . . 4181 TCGGAGTGTCACGTTCCGACAC : GATAGTATATGAGGATCGGGTGCCACGTTCCGGTACCA S E C H V P T : R - Y M R I G C H V P V P R S V T F R H : D S I - G S G A T F R Y Q I G V S R S D T : I V Y E D R V P R S G T . . . . . . 3928 GGATAGTATATGAGGAGCGGAGTGTCACGTACCGACACGAGAGGAATAAAGATAATGAAT G - Y M R S G V S R T D T R G I K I M N D S I - G A E C H V P T R E E - R - - I R I V Y E E R S V T Y R H E R N K D N E . . . . . . 3868 CTTGAAAGATGTTAATATACTCAATCTAATGAACCTAAATCCCAAATGAGTATGATGAGG L E R C - Y T Q S N E P K S Q M S M M R L K D V N I L N L M N L N P K - V - - G S - K M L I Y S I - - T - I P N E Y D E . . . . . . 3808 AGGCGTGAGTCCTCATTGATGAGCTTGGTGTTGTAACCAAGGGTTATGGTAATTGTAAAT R R E S S L M S L V L - P R V M V I V N G V S P H - - A W C C N Q G L W - L - M E A - V L I D E L G V V T K G Y G N C K . . . . . . 3748 GCTACATGTTGAGTATCATAGTTGATTTTATGATATTACTTGGTATATACTGTTTTCTAT A T C - V S - L I L - Y Y L V Y T V F Y L H V E Y H S - F Y D I T W Y I L F S I C Y M L S I I V D F M I L L G I Y C F L . . . . . . 3688 TTTGAGTTGGCCGATGATACCTACTCAGTACTTGTGTTTGTACCGACCCCCTACTTTTAT F E L A D D T Y S V L V F V P T P Y F Y L S W P M I P T Q Y L C L Y R P P T F M F - V G R - Y L L S T C V C T D P L L L . . . . . . 3628 GTTTTCTTTTTTGTTATTTGTGGAGTGCAGCAAACGTGTCATCGTCTTCAACTCAACCGC V F F F V I C G V Q Q T C H R L Q L N R F S F L L F V E C S K R V I V F N S T A C F L F C Y L W S A A N V S S S S T Q P . . . . . . 3568 AACTCTAGCCAGTCTCCATTATTTCGGATATCAGGGTGAGCTAATGCTTCTAGCTTGGAC N S S Q S P L F R I S G - A N A S S L D T L A S L H Y F G Y Q G E L M L L A W T Q L - P V S I I S D I R V S - C F - L G . . . . . . 3508 TGGATCTTCCTCTTCATGTCTTGATGCCTTGAAGTTCCGGCATGGACTAGCTTTTACTTG W I F L F M S - C L E V P A W T S F Y L G S S S S C L D A L K F R H G L A F T C L D L P L H V L M P - S S G M D - L L L . . . . . . 3448 TTTTAGCTTTTTAGAATACTCTTAGTTTAGTACTTTGATCATAGATGTTCTTGTGATGAT F - L F R I L L V - Y F D H R C S C D D F S F L E Y S - F S T L I I D V L V M M V L A F - N T L S L V L - S - M F L - - . . . . . : 3388 GACTTCCAGATTTTGGGGATAATAATAGTTATTGATTTTATTA : GAGGGTA D F Q I L G I I I V I D F I : R G T S R F W G - - - L L I L L : E G - L P D F G D N N S Y - F Y - : R V Maximal non-overlapping open reading frames (>= 64 codons): >C06HBa0024L21.1-7-_PGL-1_AGS-2_PPS_1 (5801 5445) (frame '1'; 354 bp, 118 residues) 1 DSLEKVKSIQ EKLLAAQSRQ KEYADRKVRD LEFMEGEQVL LKVSPMKGVM RFGKRGKLSP 61 RYIGPFKVLK RVGEVAYELV LPPGLSGVHP VFHVSMLKRY HGVKTTSFVG IRFFLMRI- >C06HBa0024L21.1-7-_PGL-1_AGS-2_PPS_2 (3723 3424) (frame '2'; 297 bp, 99 residues) 1 FYDITWYILF SILSWPMIPT QYLCLYRPPT FMFSFLLFVE CSKRVIVFNS TATLASLHYF 61 GYQGELMLLA WTGSSSSCLD ALKFRHGLAF TCFSFLEYS- >C06HBa0024L21.1-7-_PGL-1_AGS-2_PPS_3 (5337 5077) (frame '0'; 258 bp, 86 residues) 1 STWEKEADMR ERYPHLFTDS GTHFRPCILL MIVRGRTMGK LVSIVTTCLV VLSSRFYFWK 61 NRLRRRNLRR TVMSTTDRRG VSFQNT- >C06HBa0024L21.1-7-_PGL-1_AGS-2_PPS_4 (4946 4737) (frame '1'; 207 bp, 69 residues) 1 PAGRAVTGCV IPVWVGFLLS NLRGVLDYSS FIYKVSGFML ISLITWVLKE VTLSKLVGYY 61 CHLLFLIIC- AGS-3 (4421 4380,4329 4140,4099 4033,3918 3698) SCR (e 0.917 d 0.333 a 0.000,e 0.908 d 0.000 a 0.000,e 0.970 d 0.000 a 0.000,e 0.864) Exon 1 4421 4380 ( 42 n); score: 0.917 Intron 1 4379 4330 ( 50 n); Pd: 0.333 Pa: 0.000 Exon 2 4329 4140 ( 190 n); score: 0.908 Intron 2 4139 4100 ( 40 n); Pd: 0.000 Pa: 0.000 Exon 3 4099 4033 ( 67 n); score: 0.970 Intron 3 4032 3919 ( 114 n); Pd: 0.000 Pa: 0.000 Exon 4 3918 3698 ( 221 n); score: 0.864 PGS (4421 4380,4329 4140,4099 4033,3918 3698) SGN-E242359+ 3-phase translation of AGS-3 (-strand): . . . . . : . 4421 CCTAATCTCTTTGTTAATAATGAGGCCTTGGTATAAAAGAAG : GCTTGATGAATTGATAGA P N L F V N N E A L V - K K : A - - I D R L I S L L I M R P W Y K R R : L D E L I E - S L C - - - G L G I K E : G L M N - - . . . . . . 4311 AGGAGATTAGGGGATCGGGTGCCACGTTCCGGTACCAGGATAGTATATGAGGATCGGAGT R R L G D R V P R S G T R I V Y E D R S G D - G I G C H V P V P G - Y M R I G V K E I R G S G A T F R Y Q D S I - G S E . . . . . . 4251 GTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGCCACGTTTCGGTACCAAGATAG V T F R H Q D R I W I G C H V S V P R - S R S D T R I E Y G S G A T F R Y Q D R C H V P T P G - N M D R V P R F G T K I . . . . . . : 4191 AATATGAGGATCGGAGTGTCACGTTCCGACACTAGGATAGAATATGGATCGG : GTGTCACG N M R I G V S R S D T R I E Y G S : G V T I - G S E C H V P T L G - N M D R : V S R E Y E D R S V T F R H - D R I W I G : C H . . . . . . : 4091 TTCCGACACCAGGATAGAATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGTATAT : T F R H Q D R I W I G C H V P V P G - Y I : S D T R I E Y G S G A T F R Y Q D S I : L V P T P G - N M D R V P R S G T R I V Y : . . . . . . 3917 GAGGAGCGGAGTGTCACGTACCGACACGAGAGGAATAAAGATAATGAATCTTGAAAGATG E E R S V T Y R H E R N K D N E S - K M R S G V S R T D T R G I K I M N L E R C - G A E C H V P T R E E - R - - I L K D . . . . . . 3857 TTAATATACTCAATCTAATGAACCTAAATCCCAAATGAGTATGATGAGGAGGCGTGAGTC L I Y S I - - T - I P N E Y D E E A - V - Y T Q S N E P K S Q M S M M R R R E S V N I L N L M N L N P K - V - - G G V S . . . . . . 3797 CTCATTGATGAGCTTGGTGTTGTAACCAAGGGTTATGGTAATTGTAAATGCTACATGTTG L I D E L G V V T K G Y G N C K C Y M L S L M S L V L - P R V M V I V N A T C - P H - - A W C C N Q G L W - L - M L H V . . . . 3737 AGTATCATAGTTGATTTTATGATATTACTTGGTATATACT S I I V D F M I L L G I Y V S - L I L - Y Y L V Y T E Y H S - F Y D I T W Y I Maximal non-overlapping open reading frames (>= 64 codons): none AGS-4 (4609 3959,3927 3831) SCR (e 0.786 d 0.000 a 0.000,e 0.871) Exon 1 4609 3959 ( 651 n); score: 0.786 Intron 1 3958 3928 ( 31 n); Pd: 0.000 Pa: 0.000 Exon 2 3927 3831 ( 97 n); score: 0.871 PGS (4609 3959,3927 3831) SGN-E349726+ 3-phase translation of AGS-4 (-strand): . . . . . . 4609 TAGTCTTCGGTGGAGGTAGGTTATGGTTTCTCTTACGATATTCGTAGTAAACTCTTAATA - S S V E V G Y G F S Y D I R S K L L I S L R W R - V M V S L T I F V V N S - Y V F G G G R L W F L L R Y S - - T L N . . . . . . 4549 CCGAATGATATGTATTGATAATATTGTAAACCCTGCTATGTGCTTACTTGTATGCTTGCA P N D M Y - - Y C K P C Y V L T C M L A R M I C I D N I V N P A M C L L V C L H T E - Y V L I I L - T L L C A Y L Y A C . . . . . . 4489 TGAATGTAATTATATAATTGTGATTATATAAGCATGATGAAGTTATTGAAACCCAAATCT - M - L Y N C D Y I S M M K L L K P K S E C N Y I I V I I - A - - S Y - N P N L M N V I I - L - L Y K H D E V I E T Q I . . . . . . 4429 TGAAAAATCCTAATCTCTTTGTTAATAATGAGGCCTTGGTATAAAAGAAGGCGTGATGAA - K I L I S L L I M R P W Y K R R R D E E K S - S L C - - - G L G I K E G V M N L K N P N L F V N N E A L V - K K A - - . . . . . . 4369 CTAAAACTATGAGATTGATGATGTCTTGGTAAGAAAGAAGGCTTGATGAATTGATAGAAG L K L - D - - C L G K K E G L M N - - K - N Y E I D D V L V R K K A - - I D R R T K T M R L M M S W - E R R L D E L I E . . . . . . 4309 GAGATTAGGGGATCGGGTGCCACGTTCCGGTACCAGGATAGTATATGAGGATCGGAGTGT E I R G S G A T F R Y Q D S I - G S E C R L G D R V P R S G T R I V Y E D R S V G D - G I G C H V P V P G - Y M R I G V . . . . . . 4249 CACGTTCCGACACCAGGATAGAATATGGATCGGGTGCCACGTTTCGGTACCAAGATAGAA H V P T P G - N M D R V P R F G T K I E T F R H Q D R I W I G C H V S V P R - N S R S D T R I E Y G S G A T F R Y Q D R . . . . . . 4189 TATGAGGATCGGAGTGTCACGTTCCGACACTAGGATAGAATATGGATCGGGTGCCACATT Y E D R S V T F R H - D R I W I G C H I M R I G V S R S D T R I E Y G S G A T F I - G S E C H V P T L G - N M D R V P H . . . . . . 4129 TCGGTACCAGGATAGTATATGAGGATCGGAGTGTCACGTTCCGACACCAGGATAGAATAT S V P G - Y M R I G V S R S D T R I E Y R Y Q D S I - G S E C H V P T P G - N M F G T R I V Y E D R S V T F R H Q D R I . . . . . . 4069 GGATCGGGTGCCACGTTCCGGTACCAGGATAGTATATGAGGATCGGAGTGTCACGTTCCG G S G A T F R Y Q D S I - G S E C H V P D R V P R S G T R I V Y E D R S V T F R W I G C H V P V P G - Y M R I G V S R S . . . . . . : 4009 ACACCAGAATAGAATATGGATCGGGTGCCACGTTCGGTACCAGGATAGTAT : GATAGTATA T P E - N M D R V P R S V P G - Y : D S I H Q N R I W I G C H V R Y Q D S M : I V Y D T R I E Y G S G A T F G T R I V : - - Y . . . . . . 3918 TGAGGAGCGGAGTGTCACGTACCGACACGAGAGGAATAAAGATAATGAATCTTGAAAGAT - G A E C H V P T R E E - R - - I L K D E E R S V T Y R H E R N K D N E S - K M M R S G V S R T D T R G I K I M N L E R . . . 3858 GTTAATATACTCAATCTAATGAACCTAA V N I L N L M N L L I Y S I - - T - C - Y T Q S N E P Maximal non-overlapping open reading frames (>= 64 codons): none AGS-5 (5057 5003,4941 4413,4379 4226,4115 4045) SCR (e 0.764 d 0.000 a 0.000,e 0.757 d 0.000 a 0.486,e 0.692 d 0.000 a 0.000,e 0.986) Exon 1 5057 5003 ( 55 n); score: 0.764 Intron 1 5002 4942 ( 61 n); Pd: 0.000 Pa: 0.000 Exon 2 4941 4413 ( 529 n); score: 0.757 Intron 2 4412 4380 ( 33 n); Pd: 0.000 Pa: 0.486 Exon 3 4379 4226 ( 154 n); score: 0.692 Intron 3 4225 4116 ( 110 n); Pd: 0.000 Pa: 0.000 Exon 4 4115 4045 ( 71 n); score: 0.986 PGS (4901 4413,4379 4226,4115 4045) SGN-E546548+ PGS (5057 5003,4941 4713) SGN-E356257+ 3-phase translation of AGS-5 (-strand): . . . . . . : 5057 TGAAAATCGACTCTCTGAACTTCGTAACGGAATGGCAGGACGGACCGTCACGGGC : AGGAC - K S T L - T S - R N G R T D R H G : Q D E N R L S E L R N G M A G R T V T G : R T K I D S L N F V T E W Q D G P S R A : G . . . . . . 4936 GGGCCGTCACAGGTTGCGTAATCCCAGTCTGGGTCGGATTTCTGTTAAGTAATTTAAGGG G P S Q V A - S Q S G S D F C - V I - G G R H R L R N P S L G R I S V K - F K G R A V T G C V I P V W V G F L L S N L R . . . . . . 4876 GTGTTTTGGACTATTCCAGCTTTATTTATAAAGTTAGTGGGTTTATGTTAATAAGTCTAA V F W T I P A L F I K L V G L C - - V - C F G L F Q L Y L - S - W V Y V N K S N G V L D Y S S F I Y K V S G F M L I S L . . . . . . 4816 TTACTTGGGTGTTAAAAGAGGTAACCTTGAGTAAATTAGTGGGTTATTATTGCCATCTTT L L G C - K R - P - V N - W V I I A I F Y L G V K R G N L E - I S G L L L P S F I T W V L K E V T L S K L V G Y Y C H L . . . . . . 4756 TATTCTTAATTATATGCTAATTAGGGTAAAAGAAGGAGGGTTTGAATAAGAAAAAGAAAA Y S - L Y A N - G K R R R V - I R K R K I L N Y M L I R V K E G G F E - E K E K L F L I I C - L G - K K E G L N K K K K . . . . . . 4696 GAACAGAAAGAGAGAGAAGGAGAATCGATAGAGAGAGATGAACGAAGAGGAAAAACACAA E Q K E R E G E S I E R D E R R G K T Q N R K R E K E N R - R E M N E E E K H K R T E R E R R R I D R E R - T K R K N T . . . . . . 4636 GGCTTTGGGAAATTCTTGCTTGATCACTAGTCTTCGGTGGAGGTAGGTTATGGTTTCTCT G F G K F L L D H - S S V E V G Y G F S A L G N S C L I T S L R W R - V M V S L R L W E I L A - S L V F G G G R L W F L . . . . . . 4576 TACGATATTCGTAGTAAACTCTTAATACCGAATGATATGTATTGATAATATTGTAAACCC Y D I R S K L L I P N D M Y - - Y C K P T I F V V N S - Y R M I C I D N I V N P L R Y S - - T L N T E - Y V L I I L - T . . . . . . 4516 TGCTATGTGCTTACTTGTATGCTTGCATGAATGTAATTATATAATTGTGATTATATAAGC C Y V L T C M L A - M - L Y N C D Y I S A M C L L V C L H E C N Y I I V I I - A L L C A Y L Y A C M N V I I - L - L Y K . . . . . : . 4456 ATGATGAAGTTATTGAAACCCAAATCTTGAAAAATCCTAATCTC : GCGTGATGAACTAAAA M M K L L K P K S - K I L I S : R D E L K - - S Y - N P N L E K S - S : R V M N - N H D E V I E T Q I L K N P N L : A - - T K . . . . . . 4363 CTATGAGATTGATGATGTCTTGGTAAGAAAGAAGGCTTGATGAATTGATAGAAGGAGATT L - D - - C L G K K E G L M N - - K E I Y E I D D V L V R K K A - - I D R R R L T M R L M M S W - E R R L D E L I E G D . . . . . . 4303 AGGGGATCGGGTGCCACGTTCCGGTACCAGGATAGTATATGAGGATCGGAGTGTCACGTT R G S G A T F R Y Q D S I - G S E C H V G D R V P R S G T R I V Y E D R S V T F - G I G C H V P V P G - Y M R I G V S R . . : . . . . 4243 CCGACACCAGGATAGAAT : GTATATGAGGATCGGAGTGTCACGTTCCGACACCAGGATAGA P T P G - N : V Y E D R S V T F R H Q D R R H Q D R M : Y M R I G V S R S D T R I E S D T R I E : C I - G S E C H V P T P G - . . . 4073 ATATGGATCGGGTGCCACGTTCCGGTACC I W I G C H V P V Y G S G A T F R Y N M D R V P R S G T Maximal non-overlapping open reading frames (>= 64 codons): >C06HBa0024L21.1-7-_PGL-1_AGS-5_PPS_1 (5055 5003,4941 4737) (frame '0'; 255 bp, 85 residues) 1 KIDSLNFVTE WQDGPSRAGR AVTGCVIPVW VGFLLSNLRG VLDYSSFIYK VSGFMLISLI 61 TWVLKEVTLS KLVGYYCHLL FLIIC- AGS-6 (6312 6084) SCR (e 0.891) Exon 1 6312 6084 ( 229 n); score: 0.891 PGS (6312 6084) SGN-E353207- 3-phase translation of AGS-6 (-strand): . . . . . . 6312 TCGTGGTTGGTCTTCCAAAGACATTGGGGAAGTTTGACTCTATTTGGGTAATTGTGGACA S W L V F Q R H W G S L T L F G - L W T R G W S S K D I G E V - L Y L G N C G Q V V G L P K T L G K F D S I W V I V D . . . . . . 6252 GATTAACTAAGTCTGCTCATTTCATTCCGATCAAGGTGACTTATAATGCAGAGAAGTTAG D - L S L L I S F R S R - L I M Q R S - I N - V C S F H S D Q G D L - C R E V S R L T K S A H F I P I K V T Y N A E K L . . . . . . 6192 CCAAAATTTACATCTCAGAAATTGTTCGATTGCATGGAGTTCCACTTTCCATCATATTAG P K F T S Q K L F D C M E F H F P S Y - Q N L H L R N C S I A W S S T F H H I R A K I Y I S E I V R L H G V P L S I I L . . . . . 6132 ATAGAGGTACGCAATTTACTTCTAAGTTTTGGAGAACATTGCATGCTGA I E V R N L L L S F G E H C M L - R Y A I Y F - V L E N I A C - D R G T Q F T S K F W R T L H A Maximal non-overlapping open reading frames (>= 64 codons): >C06HBa0024L21.1-7-_PGL-1_AGS-6_PPS_1 (6310 6086) (frame '0'; 225 bp, 75 residues) 1 VVGLPKTLGK FDSIWVIVDR LTKSAHFIPI KVTYNAEKLA KIYISEIVRL HGVPLSIILD 61 RGTQFTSKFW RTLHA 3-phase translation of AGS-6 (+strand): . . . . . . 6084 TCAGCATGCAATGTTCTCCAAAACTTAGAAGTAAATTGCGTACCTCTATCTAATATGATG S A C N V L Q N L E V N C V P L S N M M Q H A M F S K T - K - I A Y L Y L I - W S M Q C S P K L R S K L R T S I - Y D . . . . . . 6144 GAAAGTGGAACTCCATGCAATCGAACAATTTCTGAGATGTAAATTTTGGCTAACTTCTCT E S G T P C N R T I S E M - I L A N F S K V E L H A I E Q F L R C K F W L T S L G K W N S M Q S N N F - D V N F G - L L . . . . . . 6204 GCATTATAAGTCACCTTGATCGGAATGAAATGAGCAGACTTAGTTAATCTGTCCACAATT A L - V T L I G M K - A D L V N L S T I H Y K S P - S E - N E Q T - L I C P Q L C I I S H L D R N E M S R L S - S V H N . . . . . 6264 ACCCAAATAGAGTCAAACTTCCCCAATGTCTTTGGAAGACCAACCACGA T Q I E S N F P N V F G R P T T P K - S Q T S P M S L E D Q P R Y P N R V K L P Q C L W K T N H Maximal non-overlapping open reading frames (>= 64 codons): none AGS-7 (6894 6321) SCR (e 0.865) Exon 1 6894 6321 ( 574 n); score: 0.865 PGS (6734 6321) SGN-E352647+ PGS (6734 6321) SGN-E352950+ PGS (6734 6321) SGN-E357100+ PGS (6894 6638) SGN-E353207+ 3-phase translation of AGS-7 (-strand): . . . . . . 6894 CCTCCGGGCCTCTGGTGTTCATACTTTACTTATTGACAATTTGGACATTTGGCAACAAAA P P G L W C S Y F T Y - Q F G H L A T K L R A S G V H T L L I D N L D I W Q Q N S G P L V F I L Y L L T I W T F G N K . . . . . . 6834 TCAACAATGTCGCGCTTCATCCTACTCCACCAAAAGTGTTGCTTTAGGTCACGATACATC S T M S R F I L L H Q K C C F R S R Y I Q Q C R A S S Y S T K S V A L G H D T S I N N V A L H P T P P K V L L - V T I H . . . . . . 6774 TTGGTTGCACCAGGATGTATAGAATATCAGGAACTATGAGCCTCTGTAAGAATAGTGTGA L V A P G C I E Y Q E L - A S V R I V - W L H Q D V - N I R N Y E P L - E - C E L G C T R M Y R I S G T M S L C K N S V . . . . . . 6714 ACCAAATCATTAACACGGGGCACACATACCCTTCCCTTAATTCTCAAAACACCTTCCTCA T K S L T R G T H T L P L I L K T P S S P N H - H G A H I P F P - F S K H L P H N Q I I N T G H T Y P S L N S Q N T F L . . . . . . 6654 TCCATTATTGCTTCTTTAGCCTCTCCTCACAACACCATATCCCGAATTTGGCTTAGTTTC S I I A S L A S P H N T I S R I W L S F P L L L L - P L L T T P Y P E F G L V S I H Y C F F S L S S Q H H I P N L A - F . . . . . . 6594 TCATCATCAAACTGTTTCCCCTTGATCTTTTCAAGAAAAGAAAATCTCGCCTCCACATTG S S S N C F P L I F S R K E N L A S T L H H Q T V S P - S F Q E K K I S P P H W L I I K L F P L D L F K K R K S R L H I . . . . . . 6534 GCCAAAAATCCTCCCTTCTTATTTACTTCTAACCTCATAAGGTCGTTAGCCAGAGTCTGA A K N P P F L F T S N L I R S L A R V - P K I L P S Y L L L T S - G R - P E S E G Q K S S L L I Y F - P H K V V S Q S L . . . . . . 6474 ACCTCTCTAGCCAATGGGCGTCTAGAAACTTATAAGTGAGCTAGACTTCCCATGCTCCCT T S L A N G R L E T Y K - A R L P M L P P L - P M G V - K L I S E L D F P C S L N L S S Q W A S R N L - V S - T S H A P . . . . . . 6414 GCTTTTCTACTTAAGGCGTCTGCCACAACATTAGCCTTTCCTGGGTGATACAAGATGGTA A F L L K A S A T T L A F P G - Y K M V L F Y L R R L P Q H - P F L G D T R W - C F S T - G V C H N I S L S W V I Q D G . . . . 6354 ACATCATAATCCTTCAGTAGTTTCATCCATCTCC T S - S F S S F I H L H H N P S V V S S I S N I I I L Q - F H P S Maximal non-overlapping open reading frames (>= 64 codons): >C06HBa0024L21.1-7-_PGL-1_AGS-7_PPS_1 (6714 6475) (frame '1'; 237 bp, 79 residues) 1 TKSLTRGTHT LPLILKTPSS SIIASLASPH NTISRIWLSF SSSNCFPLIF SRKENLASTL 61 AKNPPFLFTS NLIRSLARV- 3-phase translation of AGS-7 (+strand): . . . . . . 6321 GGAGATGGATGAAACTACTGAAGGATTATGATGTTACCATCTTGTATCACCCAGGAAAGG G D G - N Y - R I M M L P S C I T Q E R E M D E T T E G L - C Y H L V S P R K G R W M K L L K D Y D V T I L Y H P G K . . . . . . 6381 CTAATGTTGTGGCAGACGCCTTAAGTAGAAAAGCAGGGAGCATGGGAAGTCTAGCTCACT L M L W Q T P - V E K Q G A W E V - L T - C C G R R L K - K S R E H G K S S S L A N V V A D A L S R K A G S M G S L A H . . . . . . 6441 TATAAGTTTCTAGACGCCCATTGGCTAGAGAGGTTCAGACTCTGGCTAACGACCTTATGA Y K F L D A H W L E R F R L W L T T L - I S F - T P I G - R G S D S G - R P Y E L - V S R R P L A R E V Q T L A N D L M . . . . . . 6501 GGTTAGAAGTAAATAAGAAGGGAGGATTTTTGGCCAATGTGGAGGCGAGATTTTCTTTTC G - K - I R R E D F W P M W R R D F L F V R S K - E G R I F G Q C G G E I F F S R L E V N K K G G F L A N V E A R F S F . . . . . . 6561 TTGAAAAGATCAAGGGGAAACAGTTTGATGATGAGAAACTAAGCCAAATTCGGGATATGG L K R S R G N S L M M R N - A K F G I W - K D Q G E T V - - - E T K P N S G Y G L E K I K G K Q F D D E K L S Q I R D M . . . . . . 6621 TGTTGTGAGGAGAGGCTAAAGAAGCAATAATGGATGAGGAAGGTGTTTTGAGAATTAAGG C C E E R L K K Q - W M R K V F - E L R V V R R G - R S N N G - G R C F E N - G V L - G E A K E A I M D E E G V L R I K . . . . . . 6681 GAAGGGTATGTGTGCCCCGTGTTAATGATTTGGTTCACACTATTCTTACAGAGGCTCATA E G Y V C P V L M I W F T L F L Q R L I K G M C A P C - - F G S H Y S Y R G S - G R V C V P R V N D L V H T I L T E A H . . . . . . 6741 GTTCCTGATATTCTATACATCCTGGTGCAACCAAGATGTATCGTGACCTAAAGCAACACT V P D I L Y I L V Q P R C I V T - S N T F L I F Y T S W C N Q D V S - P K A T L S S - Y S I H P G A T K M Y R D L K Q H . . . . . . 6801 TTTGGTGGAGTAGGATGAAGCGCGACATTGTTGATTTTGTTGCCAAATGTCCAAATTGTC F G G V G - S A T L L I L L P N V Q I V L V E - D E A R H C - F C C Q M S K L S F W W S R M K R D I V D F V A K C P N C . . . . 6861 AATAAGTAAAGTATGAACACCAGAGGCCCGGAGG N K - S M N T R G P E I S K V - T P E A R R Q - V K Y E H Q R P G Maximal non-overlapping open reading frames (>= 64 codons): none PGL 2 (- strand): 8442 7421 AGS-1 (8218 7421) SCR (e 0.861) Exon 1 8218 7421 ( 798 n); score: 0.861 PGS (8181 7421) SGN-E354383- PGS (8218 7762) SGN-E252199- PGS (8131 8013) SGN-E275667- 3-phase translation of AGS-1 (-strand): . . . . . . 8218 CTGTGACGGTCCGTCCTGCCACTTCGTCGTGAAGTTCAGAGAGTCGATTTCAGTATCCAA L - R S V L P L R R E V Q R V D F S I Q C D G P S C H F V V K F R E S I S V S K V T V R P A T S S - S S E S R F Q Y P . . . . . . 8158 ATTTTAGAATTCTAAGTGTTTTGGAACGAGACCCCCACGACGGTCTGTCGTGCCCATGCC I L E F - V F W N E T P T T V C R A H A F - N S K C F G T R P P R R S V V P M P N F R I L S V L E R D P H D G L S C P C . . . . . . 8098 GGTTCATCGTGGGATCCGTCGACTTAGCCAGTTTTTCCAGAAATAAAATCTGCTGCTCAA G S S W D P S T - P V F P E I K S A A Q V H R G I R R L S Q F F Q K - N L L L K R F I V G S V D L A S F S R N K I C C S . . . . . . 8038 AACGACTAAACAGGTCGTTACAATAGATACCAATTTACCCATCGTTCGTCTCCGAACGAT N D - T G R Y N R Y Q F T H R S S P N D T T K Q V V T I D T N L P I V R L R T I K R L N R S L Q - I P I Y P S F V S E R . . . . . . 7978 CACAAGAAGGAAAACAAGGGCGAAAATGAGTACCTGAATCTGTAAACAGGTGTGGGTATC H K K E N K G E N E Y L N L - T G V G I T R R K T R A K M S T - I C K Q V W V S S Q E G K Q G R K - V P E S V N R C G Y . . . . . . 7918 TTTCTCGCATATCAGTCTCCTTCTCCCAAGTGGACTCTTCAACTGGTCGATTCTTCCATT F L A Y Q S P S P K W T L Q L V D S S I F S H I S L L L P S G L F N W S I L P L L S R I S V S F S Q V D S S T G R F F H . . . . . . 7858 GAACTTTGATAGATGCAATCTCCATTGATCTCAACTTGCGAATTTCTCTATTTAGAATGG E L - - M Q S P L I S T C E F L Y L E W N F D R C N L H - S Q L A N F S I - N G - T L I D A I S I D L N L R I S L F R M . . . . . . 7798 CAACAGGCTTCTCCTCATAAGTCAAATTCTCATCAAGAAGAACCGAATCCCAACGAATGA Q Q A S P H K S N S H Q E E P N P N E - N R L L L I S Q I L I K K N R I P T N D A T G F S S - V K F S S R R T E S Q R M . . . . . . 7738 TGTAGTTTTCACCCCATGGTATCTTTTCAACATAGACACATGAAATACCGGATGCACTCC C S F H P M V S F Q H R H M K Y R M H S V V F T P W Y L F N I D T - N T G C T P M - F S P H G I F S T - T H E I P D A L . . . . . . 7678 TGACAGTCCTGGGGGCAAGACTAATTCATAAGCCACCTCCCCTACTCGCTTAAGTACTTT - Q S W G Q D - F I S H L P Y S L K Y F D S P G G K T N S - A T S P T R L S T L L T V L G A R L I H K P P P L L A - V L . . . . . . 7618 AAATGGTCCAATATACCTTGGGCTTAGCTTACCTCTTTTTCCAAACCGCATCACCCCTTT K W S N I P W A - L T S F S K P H H P F N G P I Y L G L S L P L F P N R I T P F - M V Q Y T L G L A Y L F F Q T A S P L . . . . . . 7558 CATGGGCGAAACCTTCAGCAAGACTTGCTCACCCTCCATGAACTCCAAGTCTCTAACCTT H G R N L Q Q D L L T L H E L Q V S N L M G E T F S K T C S P S M N S K S L T F S W A K P S A R L A H P P - T P S L - P . . . . . . 7498 TCGATCTGCATATTCCTTTTGCCTGCTTTGAGCCGCTAAGAGCTTTTCTTGAATAGATTT S I C I F L L P A L S R - E L F L N R F R S A Y S F C L L - A A K S F S - I D F F D L H I P F A C F E P L R A F L E - I . . 7438 CACCTTCTCTAATGAATC H L L - - I T F S N E S P S L M N Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-1 (+strand): . . . . . . 7421 GATTCATTAGAGAAGGTGAAATCTATTCAAGAAAAGCTCTTAGCGGCTCAAAGCAGGCAA D S L E K V K S I Q E K L L A A Q S R Q I H - R R - N L F K K S S - R L K A G K F I R E G E I Y S R K A L S G S K Q A . . . . . . 7481 AAGGAATATGCAGATCGAAAGGTTAGAGACTTGGAGTTCATGGAGGGTGAGCAAGTCTTG K E Y A D R K V R D L E F M E G E Q V L R N M Q I E R L E T W S S W R V S K S C K G I C R S K G - R L G V H G G - A S L . . . . . . 7541 CTGAAGGTTTCGCCCATGAAAGGGGTGATGCGGTTTGGAAAAAGAGGTAAGCTAAGCCCA L K V S P M K G V M R F G K R G K L S P - R F R P - K G - C G L E K E V S - A Q A E G F A H E R G D A V W K K R - A K P . . . . . . 7601 AGGTATATTGGACCATTTAAAGTACTTAAGCGAGTAGGGGAGGTGGCTTATGAATTAGTC R Y I G P F K V L K R V G E V A Y E L V G I L D H L K Y L S E - G R W L M N - S K V Y W T I - S T - A S R G G G L - I S . . . . . . 7661 TTGCCCCCAGGACTGTCAGGAGTGCATCCGGTATTTCATGTGTCTATGTTGAAAAGATAC L P P G L S G V H P V F H V S M L K R Y C P Q D C Q E C I R Y F M C L C - K D T L A P R T V R S A S G I S C V Y V E K I . . . . . . 7721 CATGGGGTGAAAACTACATCATTCGTTGGGATTCGGTTCTTCTTGATGAGAATTTGACTT H G V K T T S F V G I R F F L M R I - L M G - K L H H S L G F G S S - - E F D L P W G E N Y I I R W D S V L L D E N L T . . . . . . 7781 ATGAGGAGAAGCCTGTTGCCATTCTAAATAGAGAAATTCGCAAGTTGAGATCAATGGAGA M R R S L L P F - I E K F A S - D Q W R - G E A C C H S K - R N S Q V E I N G D Y E E K P V A I L N R E I R K L R S M E . . . . . . 7841 TTGCATCTATCAAAGTTCAATGGAAGAATCGACCAGTTGAAGAGTCCACTTGGGAGAAGG L H L S K F N G R I D Q L K S P L G R R C I Y Q S S M E E S T S - R V H L G E G I A S I K V Q W K N R P V E E S T W E K . . . . . . 7901 AGACTGATATGCGAGAAAGATACCCACACCTGTTTACAGATTCAGGTACTCATTTTCGCC R L I C E K D T H T C L Q I Q V L I F A D - Y A R K I P T P V Y R F R Y S F S P E T D M R E R Y P H L F T D S G T H F R . . . . . . 7961 CTTGTTTTCCTTCTTGTGATCGTTCGGAGACGAACGATGGGTAAATTGGTATCTATTGTA L V F L L V I V R R R T M G K L V S I V L F S F L - S F G D E R W V N W Y L L - P C F P S C D R S E T N D G - I G I Y C . . . . . . 8021 ACGACCTGTTTAGTCGTTTTGAGCAGCAGATTTTATTTCTGGAAAAACTGGCTAAGTCGA T T C L V V L S S R F Y F W K N W L S R R P V - S F - A A D F I S G K T G - V D N D L F S R F E Q Q I L F L E K L A K S . . . . . . 8081 CGGATCCCACGATGAACCGGCATGGGCACGACAGACCGTCGTGGGGGTCTCGTTCCAAAA R I P R - T G M G T T D R R G G L V P K G S H D E P A W A R Q T V V G V S F Q N T D P T M N R H G H D R P S W G S R S K . . . . . . 8141 CACTTAGAATTCTAAAATTTGGATACTGAAATCGACTCTCTGAACTTCACGACGAAGTGG H L E F - N L D T E I D S L N F T T K W T - N S K I W I L K S T L - T S R R S G T L R I L K F G Y - N R L S E L H D E V . . 8201 CAGGACGGACCGTCACAG Q D G P S Q R T D R H A G R T V T Maximal non-overlapping open reading frames (>= 64 codons): >C06HBa0024L21.1-7+_PGL-2_AGS-1_PPS_1 (7421 7777) (frame '1'; 354 bp, 118 residues) 1 DSLEKVKSIQ EKLLAAQSRQ KEYADRKVRD LEFMEGEQVL LKVSPMKGVM RFGKRGKLSP 61 RYIGPFKVLK RVGEVAYELV LPPGLSGVHP VFHVSMLKRY HGVKTTSFVG IRFFLMRI- >C06HBa0024L21.1-7+_PGL-2_AGS-1_PPS_2 (7654 8004) (frame '0'; 348 bp, 116 residues) 1 ISLAPRTVRS ASGISCVYVE KIPWGENYII RWDSVLLDEN LTYEEKPVAI LNREIRKLRS 61 MEIASIKVQW KNRPVEESTW EKETDMRERY PHLFTDSGTH FRPCFPSCDR SETNDG- AGS-2 (8442 8196,8120 8098) SCR (e 0.832 d 0.000 a 0.000,e 0.826) Exon 1 8442 8196 ( 247 n); score: 0.832 Intron 1 8195 8121 ( 75 n); Pd: 0.000 Pa: 0.000 Exon 2 8120 8098 ( 23 n); score: 0.826 PGS (8442 8196,8120 8098) SGN-E242274- 3-phase translation of AGS-2 (-strand): . . . . . . 8442 AATTAATTCAAGGTTATCTCCTTTAACCCTCAAGTAGTTAAATTATTAACATTAACCCAC N - F K V I S F N P Q V V K L L T L T H I N S R L S P L T L K - L N Y - H - P T L I Q G Y L L - P S S S - I I N I N P . . . . . . 8382 TAAATTTATAATTATAGCAGGAATAGTCCAAAATGTCCCTTAAAACACTTAAAGAAATCC - I Y N Y S R N S P K C P L K H L K K S K F I I I A G I V Q N V P - N T - R N P L N L - L - Q E - S K M S L K T L K E I . . . . . . 8322 GACTCAGCCTAGGATCACGCAGCCTGTGACGGGCCGTCGTGCCTGCGACGGTCTGTCTTG D S A - D H A A C D G P S C L R R S V L T Q P R I T Q P V T G R R A C D G L S C R L S L G S R S L - R A V V P A T V C L . . . . . . 8262 CTGCTTCCGTCACAGAGTTCAGAGACTAGATTTTTACCAAGGGTCTGTGACGGTCCGTCC L L P S Q S S E T R F L P R V C D G P S C F R H R V Q R L D F Y Q G S V T V R P A A S V T E F R D - I F T K G L - R S V . : . . 8202 TGCCACT : GACGGTCTGTCGTGCCCATGCCG C H : - R S V V P M P A T : D G L S C P C L P L : T V C R A H A Maximal non-overlapping open reading frames (>= 64 codons): none PGL 3 (- strand): 9884 8798 AGS-1 (9884 9076,9035 8798) SCR (e 0.829 d 0.291 a 0.000,e 0.905) Exon 1 9884 9076 ( 809 n); score: 0.829 Intron 1 9075 9036 ( 40 n); Pd: 0.291 Pa: 0.000 Exon 2 9035 8798 ( 238 n); score: 0.905 PGS (9356 9076,9035 8798) SGN-E242359- PGS (9546 9142) SGN-E246710- PGS (9447 9212) SGN-E209683- PGS (9857 9372) SGN-E351546- PGS (9857 9372) SGN-E356206- PGS (9857 9372) SGN-E356696- PGS (9730 9443) SGN-E222578+ PGS (9884 9454) SGN-E370357+ PGS (9691 9457) SGN-E373117- PGS (9691 9457) SGN-E373116+ PGS (9691 9501) SGN-E298638- PGS (9692 9531) SGN-E238551- PGS (9685 9531) SGN-E352844- PGS (9685 9531) SGN-E368629- 3-phase translation of AGS-1 (-strand): . . . . . . 9884 TTCAAAAATTATGTCGAACACCTTAAGTGTCACGACCCAAAGCGGGTCGCGAGTGGCACC F K N Y V E H L K C H D P K R V A S G T S K I M S N T L S V T T Q S G S R V A P Q K L C R T P - V S R P K A G R E W H . . . . . . 9824 CACACTTATCCCCCTATGTGAGCGAACCAACCAATCTAAACCCCAACATTTCAACCATAA H T Y P P M - A N Q P I - T P T F Q P - T L I P L C E R T N Q S K P Q H F N H N P H L S P Y V S E P T N L N P N I S T I . . . . . . 9764 TTAACATAATATAATGCGGAAGACTTAAACTCATTAATGAAAATCGATTAAATAACTTCT L T - Y N A E D L N S L M K I D - I T S - H N I M R K T - T H - - K S I K - L L I N I I - C G R L K L I N E N R L N N F . . . . . . 9704 AAAAACGCATTACTTATTATTCCCAAAATCTGGAAGTCATCATCACAAGAACATCTATCC K N A L L I I P K I W K S S S Q E H L S K T H Y L L F P K S G S H H H K N I Y P - K R I T Y Y S Q N L E V I I T R T S I . . . . . . 9644 TCAAATCACTAATTCTAAGAGTATCTAGAAAGCTAGAATAAATAGAAAGCTAGTCCTTGC S N H - F - E Y L E S - N K - K A S P C Q I T N S K S I - K A R I N R K L V L A L K S L I L R V S R K L E - I E S - S L . . . . . . 9584 CGGAACTTCAAGGCATCAAGACATGAAGAAGAAGATCCAGTCCAAGCTAGAAGCGTTAGC R N F K A S R H E E E D P V Q A R S V S G T S R H Q D M K K K I Q S K L E A L A P E L Q G I K T - R R R S S P S - K R - . . . . . . 9524 TCACCCTGAAATCCGGTGTAATGAAGACTGGCTAGAGTTGCGATTGAGTTGAAGGCGACA S P - N P V - - R L A R V A I E L K A T H P E I R C N E D W L E L R L S - R R Q L T L K S G V M K T G - S C D - V E G D . . . . . . 9464 GTACGTTTACTGTACTCCACAAATAACAAAGAAAGAAACATACAAGTAGGGGTCAGTACA V R L L Y S T N N K E R N I Q V G V S T Y V Y C T P Q I T K K E T Y K - G S V Q S T F T V L H K - Q R K K H T S R G Q Y . . . . . . 9404 AAACACAGGTACTGAGTAGATATCATCGGCCAACTCAAAATAGAAAACAGTATATATCAG K H R Y - V D I I G Q L K I E N S I Y Q N T G T E - I S S A N S K - K T V Y I R K T Q V L S R Y H R P T Q N R K Q Y I S . . . . . . 9344 ATAATATCATAAAATAAACTACAATACTCAACATGCGGCATTTACAATTACCATAACCCT I I S - N K L Q Y S T C G I Y N Y H N P - Y H K I N Y N T Q H A A F T I T I T L D N I I K - T T I L N M R H L Q L P - P . . . . . . 9284 TAGTCACAACACCAAGCACATCAATGAGGACTCACGCCTCCCCATCTTACTTATTTGGGA - S Q H Q A H Q - G L T P P H L T Y L G S H N T K H I N E D S R L P I L L I W E L V T T P S T S M R T H A S P S Y L F G . . . . . . 9224 ATTAGGTTCATTAAATTGAGTATATTAACATATTTCAAGATTCATTCGCTTTACTAATCC I R F I K L S I L T Y F K I H S L Y - S L G S L N - V Y - H I S R F I R F T N P N - V H - I E Y I N I F Q D S F A L L I . . . . . . 9164 TGGTGCCGAAACGTGACACTCCGATCCTCATATACTATCCTGGTACCGGAACGTGGCACC W C R N V T L R S S Y T I L V P E R G T G A E T - H S D P H I L S W Y R N V A P L V P K R D T P I L I Y Y P G T G T W H . . . : . . . 9104 CGATCCATATACTATCCTGGTGCCGAAAC : GTGGCATCCGATCCATATACTATCCTGGTGT R S I Y Y P G A E T : W H P I H I L S W C D P Y T I L V P K : R G I R S I Y Y P G V P I H I L S W C R N : V A S D P Y T I L V . . . . . . 9004 CGGAACGTGACTCTGATCCTCATATACTATCCTGGTACCGGAACGTGGCACCCGATCCAT R N V T L I L I Y Y P G T G T W H P I H G T - L - S S Y T I L V P E R G T R S I S E R D S D P H I L S W Y R N V A P D P . . . . . . 8944 ATACTATCCTGGTGTCGAAACGTGACACTCCGATCCTCATATACTATCCTAGTACCGGAA I L S W C R N V T L R S S Y T I L V P E Y Y P G V E T - H S D P H I L S - Y R N Y T I L V S K R D T P I L I Y Y P S T G . . . . . . 8884 CGTGGCACCCGATCCCCTAATCTCACTACTTTCATTCATCAAACCTTCTTTTATACCAGG R G T R S P N L T T F I H Q T F F Y T R V A P D P L I S L L S F I K P S F I P G T W H P I P - S H Y F H S S N L L L Y Q . . . 8824 GCATCATCATTAACAAAGTAGATTAGG A S S L T K - I R H H H - Q S R L G I I I N K V D - Maximal non-overlapping open reading frames (>= 64 codons): >C06HBa0024L21.1-7-_PGL-3_AGS-1_PPS_1 (9167 9076,9035 8804) (frame '1'; 321 bp, 107 residues) 1 SWCRNVTLRS SYTILVPERG TRSIYYPGAE TWHPIHILSW CRNVTLILIY YPGTGTWHPI 61 HILSWCRNVT LRSSYTILVP ERGTRSPNLT TFIHQTFFYT RASSLTK- >C06HBa0024L21.1-7-_PGL-3_AGS-1_PPS_2 (9210 9076,9035 8865) (frame '0'; 303 bp, 101 residues) 1 IEYINIFQDS FALLILVPKR DTPILIYYPG TGTWHPIHIL SWCRNVASDP YTILVSERDS 61 DPHILSWYRN VAPDPYTILV SKRDTPILIY YPSTGTWHPI P- AGS-2 (9691 9106,8993 8884) SCR (e 0.802 d 0.000 a 0.000,e 0.927) Exon 1 9691 9106 ( 586 n); score: 0.802 Intron 1 9105 8994 ( 112 n); Pd: 0.000 Pa: 0.000 Exon 2 8993 8884 ( 110 n); score: 0.927 PGS (9691 9106,8993 8884) SGN-E546506+ 3-phase translation of AGS-2 (-strand): . . . . . . 9691 TTATTATTCCCAAAATCTGGAAGTCATCATCACAAGAACATCTATCCTCAAATCACTAAT L L F P K S G S H H H K N I Y P Q I T N Y Y S Q N L E V I I T R T S I L K S L I I I P K I W K S S S Q E H L S S N H - . . . . . . 9631 TCTAAGAGTATCTAGAAAGCTAGAATAAATAGAAAGCTAGTCCTTGCCGGAACTTCAAGG S K S I - K A R I N R K L V L A G T S R L R V S R K L E - I E S - S L P E L Q G F - E Y L E S - N K - K A S P C R N F K . . . . . . 9571 CATCAAGACATGAAGAAGAAGATCCAGTCCAAGCTAGAAGCGTTAGCTCACCCTGAAATC H Q D M K K K I Q S K L E A L A H P E I I K T - R R R S S P S - K R - L T L K S A S R H E E E D P V Q A R S V S S P - N . . . . . . 9511 CGGTGTAATGAAGACTGGCTAGAGTTGCGATTGAGTTGAAGGCGACAGTACGTTTACTGT R C N E D W L E L R L S - R R Q Y V Y C G V M K T G - S C D - V E G D S T F T V P V - - R L A R V A I E L K A T V R L L . . . . . . 9451 ACTCCACAAATAACAAAGAAAGAAACATACAAGTAGGGGTCAGTACAAAACACAGGTACT T P Q I T K K E T Y K - G S V Q N T G T L H K - Q R K K H T S R G Q Y K T Q V L Y S T N N K E R N I Q V G V S T K H R Y . . . . . . 9391 GAGTAGATATCATCGGCCAACTCAAAATAGAAAACAGTATATATCAGATAATATCATAAA E - I S S A N S K - K T V Y I R - Y H K S R Y H R P T Q N R K Q Y I S D N I I K - V D I I G Q L K I E N S I Y Q I I S - . . . . . . 9331 ATAAACTACAATACTCAACATGCGGCATTTACAATTACCATAACCCTTAGTCACAACACC I N Y N T Q H A A F T I T I T L S H N T - T T I L N M R H L Q L P - P L V T T P N K L Q Y S T C G I Y N Y H N P - S Q H . . . . . . 9271 AAGCACATCAATGAGGACTCACGCCTCCCCATCTTACTTATTTGGGAATTAGGTTCATTA K H I N E D S R L P I L L I W E L G S L S T S M R T H A S P S Y L F G N - V H - Q A H Q - G L T P P H L T Y L G I R F I . . . . . . 9211 AATTGAGTATATTAACATATTTCAAGATTCATTCGCTTTACTAATCCTGGTGCCGAAACG N - V Y - H I S R F I R F T N P G A E T I E Y I N I F Q D S F A L L I L V P K R K L S I L T Y F K I H S L Y - S W C R N . . . . . : . 9151 TGACACTCCGATCCTCATATACTATCCTGGTACCGGAACGTGGCAC : TCTGATCCTCATAT - H S D P H I L S W Y R N V A : L - S S Y D T P I L I Y Y P G T G T W H : S D P H I V T L R S S Y T I L V P E R G T : L I L I . . . . . . 8979 ACTATCCTGGTACCGGAACGTGGCACCCGATCCATATACTATCCTGGTGTCGAAACGTGA T I L V P E R G T R S I Y Y P G V E T - L S W Y R N V A P D P Y T I L V S K R D Y Y P G T G T W H P I H I L S W C R N V . . . . 8919 CACTCCGATCCTCATATACTATCCTAGTACCGGAAC H S D P H I L S - Y R N T P I L I Y Y P S T G T L R S S Y T I L V P E Maximal non-overlapping open reading frames (>= 64 codons): >C06HBa0024L21.1-7-_PGL-3_AGS-2_PPS_1 (9210 9106,8993 8886) (frame '2'; 213 bp, 71 residues) 1 IEYINIFQDS FALLILVPKR DTPILIYYPG TGTWHSDPHI LSWYRNVAPD PYTILVSKRD 61 TPILIYYPST G AGS-3 (9123 9053,8981 8947) SCR (e 0.944 d 0.000 a 0.000,e 0.971) Exon 1 9123 9053 ( 71 n); score: 0.944 Intron 1 9052 8982 ( 71 n); Pd: 0.000 Pa: 0.000 Exon 2 8981 8947 ( 35 n); score: 0.971 PGS (9123 9053,8981 8947) SGN-E546548- 3-phase translation of AGS-3 (-strand): . . . . . . 9123 GGTACCGGAACGTGGCACCCGATCCATATACTATCCTGGTGCCGAAACGTGACACTCCGA G T G T W H P I H I L S W C R N V T L R V P E R G T R S I Y Y P G A E T - H S D Y R N V A P D P Y T I L V P K R D T P . . : . . . 9063 TCCTCATATAC : ATACTATCCTGGTACCGGAACGTGGCACCCGATCC S S Y T : Y Y P G T G T W H P I P H I : H T I L V P E R G T R S I L I Y : I L S W Y R N V A P D Maximal non-overlapping open reading frames (>= 64 codons): none PGL 4 (+ strand): 10418 12294 AGS-1 (10418 10754,10785 11109,12151 12294) SCR (e 0.849 d 0.000 a 0.994,e 0.871 d 0.193 a 0.000,e 0.947) Exon 1 10418 10754 ( 337 n); score: 0.849 Intron 1 10755 10784 ( 30 n); Pd: 0.000 Pa: 0.994 Exon 2 10785 11109 ( 325 n); score: 0.871 Intron 2 11110 12150 (1041 n); Pd: 0.193 Pa: 0.000 Exon 3 12151 12294 ( 144 n); score: 0.947 PGS (10418 10754,10785 10955) SGN-E394609- PGS (10420 10754,10785 10955) SGN-E379618- PGS (10459 10754,10785 10955) SGN-E200845- PGS (10604 10754,10785 10955) SGN-E393076- PGS (10624 10754,10785 10955) SGN-E393075- PGS (10773 11109,12151 12287) SGN-E379427+ PGS (10807 10953) SGN-E392727- PGS (12144 12294) SGN-E379333+ PGS (12144 12294) SGN-E200682+ 3-phase translation of AGS-1 (+strand): . . . . . . 10418 TTTTAAATAATAACATGGGATAATTGTATATAATAGCAAATTAATAACTTAAAATAAATG F - I I T W D N C I - - Q I N N L K - M F K - - H G I I V Y N S K L I T - N K W L N N N M G - L Y I I A N - - L K I N . . . . . . 10478 GAGTAGCTACGGTTTGATTTAATTGTGCTCCATAGCAAACGTTAGTCAAAGTTTGCCAGT E - L R F D L I V L H S K R - S K F A S S S Y G L I - L C S I A N V S Q S L P V G V A T V - F N C A P - Q T L V K V C Q . . . . . . 10538 CGCCTCTCTACCAAAAATCTCGCTCGCCACTCTCCCATTCTCGCTCGCCACTCTCCCTCT R L S T K N L A R H S P I L A R H S P S A S L P K I S L A T L P F S L A T L P L S P L Y Q K S R S P L S H S R S P L S L . . . . . . 10598 GCTCACCTCTCTCGCTTTATACACAGAAGTGTATAAATTGTGTTTCTGTTTTGTATAAAG A H L S R F I H R S V - I V F L F C I K L T S L A L Y T E V Y K L C F C F V - S C S P L S L Y T Q K C I N C V S V L Y K . . . . . . 10658 CGAGAGAAAATTGTATATACACATGCAAAAATATATATCTTTGTGCTATACACTTAATTA R E K I V Y T H A K I Y I F V L Y T - L E R K L Y I H M Q K Y I S L C Y T L N Y A R E N C I Y T C K N I Y L C A I H L I . . . . : . . 10718 TACAATTTACAAACATTTTACTTCAATTCAATTGCAG : CGAAAAGGCCAACGAATCATACA Y N L Q T F Y F N S I A : A K R P T N H T T I Y K H F T S I Q L Q : R K G Q R I I Q I Q F T N I L L Q F N C S : E K A N E S Y . . . . . . 10808 ATTGCGAATTATACAATTGCAGTAAAATACAATTTTCTCTCGCTTTATACAACAGAAGTA I A N Y T I A V K Y N F L S L Y T T E V L R I I Q L Q - N T I F S R F I Q Q K Y N C E L Y N C S K I Q F S L A L Y N R S . . . . . . 10868 TATATTGTGTTTCTGTTTTTGTATAAAGCGAGAGAAAAACATATATCTTCTTCCTATACA Y I V F L F L Y K A R E K H I S S S Y T I L C F C F C I K R E K N I Y L L P I H I Y C V S V F V - S E R K T Y I F F L Y . . . . . . 10928 CTTATAATTATGCAATATACATACATTTCACTTCGATTCAATTGTATGCAAAGCAAATTT L I I M Q Y T Y I S L R F N C M Q S K F L - L C N I H T F H F D S I V C K A N F T Y N Y A I Y I H F T S I Q L Y A K Q I . . . . . . 10988 TATACAAATATTGCAACGAAATAGGCACCGAATTGTACAATTGTGCATTATACAATTGCA Y T N I A T K - A P N C T I V H Y T I A I Q I L Q R N R H R I V Q L C I I Q L Q L Y K Y C N E I G T E L Y N C A L Y N C . . . . . . 11048 GTGAAATAAGATAACGAATTATACAATTGCAGCAAAATAGGCTAGCAAATTATACAATTT V K - D N E L Y N C S K I G - Q I I Q F - N K I T N Y T I A A K - A S K L Y N L S E I R - R I I Q L Q Q N R L A N Y T I . : . . . . . 11108 AG : GCCAGCGAATTATACAATTGTATATGTATAGCAAATTATACAGTTTTATGTTTGCTAT R : P A N Y T I V Y V - Q I I Q F Y V C Y : G Q R I I Q L Y M Y S K L Y S F M F A M - : A S E L Y N C I C I A N Y T V L C L L . . . . . . 12209 GTAGCGTAATTATGCAAAGTTTGCTATAGCATACAAATATGAATTTTTTATTTGCTATAT V A - L C K V C Y S I Q I - I F Y L L Y - R N Y A K F A I A Y K Y E F F I C Y M C S V I M Q S L L - H T N M N F L F A I . . . 12269 GTGAAAGTTGCCCATTAATATATAAT V K V A H - Y I - K L P I N I - C E S C P L I Y N Maximal non-overlapping open reading frames (>= 64 codons): >C06HBa0024L21.1-7+_PGL-4_AGS-1_PPS_1 (10513 10754,10785 10893) (frame '0'; 348 bp, 116 residues) 1 QTLVKVCQSP LYQKSRSPLS HSRSPLSLCS PLSLYTQKCI NCVSVLYKAR ENCIYTCKNI 61 YLCAIHLIIQ FTNILLQFNC SEKANESYNC ELYNCSKIQF SLALYNRSIY CVSVFV- AGS-2 (10901 11033,11080 11109,12099 12145,12194 12287) SCR (e 0.902 d 0.000 a 0.436,e 0.750 d 0.193 a 0.937,e 0.936 d 0.000 a 0.000,e 0.936) Exon 1 10901 11033 ( 133 n); score: 0.902 Intron 1 11034 11079 ( 46 n); Pd: 0.000 Pa: 0.436 Exon 2 11080 11109 ( 30 n); score: 0.750 Intron 2 11110 12098 ( 989 n); Pd: 0.193 Pa: 0.937 Exon 3 12099 12145 ( 47 n); score: 0.936 Intron 3 12146 12193 ( 48 n); Pd: 0.000 Pa: 0.000 Exon 4 12194 12287 ( 94 n); score: 0.936 PGS (10901 11033,11080 11109,12099 12145,12194 12287) SGN-E578389+ 3-phase translation of AGS-2 (+strand): . . . . . . 10901 GAAAAACATATATCTTCTTCCTATACACTTATAATTATGCAATATACATACATTTCACTT E K H I S S S Y T L I I M Q Y T Y I S L K N I Y L L P I H L - L C N I H T F H F K T Y I F F L Y T Y N Y A I Y I H F T . . . . . . 10961 CGATTCAATTGTATGCAAAGCAAATTTTATACAAATATTGCAACGAAATAGGCACCGAAT R F N C M Q S K F Y T N I A T K - A P N D S I V C K A N F I Q I L Q R N R H R I S I Q L Y A K Q I L Y K Y C N E I G T E . . : . . . : . 11021 TGTACAATTGTGC : CAAAATAGGCTAGCAAATTATACAATTTAG : CGAAATAGGCCAGCGAA C T I V : P K - A S K L Y N L : A K - A S E V Q L C : Q N R L A N Y T I - : R N R P A N L Y N C A : K I G - Q I I Q F S : E I G Q R . . . : . . . 12116 TTATACAATTTATGCCAGAGAATTATACAA : TTTTATGTTTGCTATGTAGCGTAATTATGC L Y N L C Q R I I Q : F Y V C Y V A - L C Y T I Y A R E L Y N : F M F A M - R N Y A I I Q F M P E N Y T : I L C L L C S V I M . . . . . . 12224 AAAGTTTGCTATAGCATACAAATATGAATTTTTTATTTGCTATATGTGAAAGTTGCCCAT K V C Y S I Q I - I F Y L L Y V K V A H K F A I A Y K Y E F F I C Y M - K L P I Q S L L - H T N M N F L F A I C E S C P . 12284 TAAT - N L Maximal non-overlapping open reading frames (>= 64 codons): none AGS-3 (11012 11061,12156 12274) SCR (e 0.920 d 0.000 a 0.000,e 0.933) Exon 1 11012 11061 ( 50 n); score: 0.920 Intron 1 11062 12155 (1094 n); Pd: 0.000 Pa: 0.000 Exon 2 12156 12274 ( 119 n); score: 0.933 PGS (11012 11061,12156 12274) SGN-E371327+ 3-phase translation of AGS-3 (+strand): . . . . . : . 11012 GCACCGAATTGTACAATTGTGCATTATACAATTGCAGTGAAATAAGATAA : CGAATTATAC A P N C T I V H Y T I A V K - D N : E L Y H R I V Q L C I I Q L Q - N K I : T N Y T T E L Y N C A L Y N C S E I R - : R I I . . . . . . 12166 AATTGTATATGTATAGCAAATTATACAGTTTTATGTTTGCTATGTAGCGTAATTATGCAA N C I C I A N Y T V L C L L C S V I M Q I V Y V - Q I I Q F Y V C Y V A - L C K Q L Y M Y S K L Y S F M F A M - R N Y A . . . . . 12226 AGTTTGCTATAGCATACAAATATGAATTTTTTATTTGCTATATGTGAAA S L L - H T N M N F L F A I C E V C Y S I Q I - I F Y L L Y V K K F A I A Y K Y E F F I C Y M - Maximal non-overlapping open reading frames (>= 64 codons): none AGS-4 (11592 12057) SCR (e 0.921) Exon 1 11592 12057 ( 466 n); score: 0.921 PGS (11592 12057) SGN-E394609- PGS (11592 12057) SGN-E379112+ PGS (11592 12057) SGN-E393065- PGS (11592 12056) SGN-E379618- PGS (11592 11926) SGN-E394141+ PGS (11592 11879) SGN-E392605+ PGS (11610 12056) SGN-E200845- PGS (11736 12057) SGN-E393076- PGS (11754 12057) SGN-E393075- PGS (11907 12057) SGN-E392727- 3-phase translation of AGS-4 (+strand): . . . . . . 11592 ATTGTATATAATAGCAAACTAATAACTTAAATTAAATGAAATAGCTAGGGTTTGATTTAA I V Y N S K L I T - I K - N S - G L I - L Y I I A N - - L K L N E I A R V - F N C I - - Q T N N L N - M K - L G F D L . . . . . . 11652 TTGTGCTCCATAGCAAACATTAGCTAAAATTTGTCAGCGTCTCTCTCCCAAGAATCTCGC L C S I A N I S - N L S A S L S Q E S R C A P - Q T L A K I C Q R L S P K N L A I V L H S K H - L K F V S V S L P R I S . . . . . . 11712 TCGCCACTCTCCATTCTCGCTCGCCTCTCTCGCTTTATACACAAAAGTGTATAATTCTGT S P L S I L A R L S R F I H K S V - F C R H S P F S L A S L A L Y T K V Y N S V L A T L H S R S P L S L Y T Q K C I I L . . . . . . 11772 TTCTGTTTTGTATAAAGCGAGAGAAAATTGTATATACACATGCAAAAATGTATATCTTCG F C F V - S E R K L Y I H M Q K C I S S S V L Y K A R E N C I Y T C K N V Y L R F L F C I K R E K I V Y T H A K M Y I F . . . . . . 11832 TGTTATACACTTAATTATACAATTTACAAACATTTTACTTCAAATATTGCAGAGAAAAAG C Y T L N Y T I Y K H F T S N I A E K K V I H L I I Q F T N I L L Q I L Q R K R V L Y T - L Y N L Q T F Y F K Y C R E K . . . . . . 11892 GCCAACAAATTATACAATTGCGAATTATACAATTGCAGTGAAATACAATTTTCTCTAGCT A N K L Y N C E L Y N C S E I Q F S L A P T N Y T I A N Y T I A V K Y N F L - L G Q Q I I Q L R I I Q L Q - N T I F S S . . . . . . 11952 TTATACAACAGAAGTGTATATATTGTGTTTCTGTTTTTGTATAAAGCGAGAAAAACATAT L Y N R S V Y I V F L F L Y K A R K T Y Y T T E V Y I L C F C F C I K R E K H I F I Q Q K C I Y C V S V F V - S E K N I . . . . . 12012 ATCTTCTTGTTATACACTTATAATTATGCAATATACATACATTTTA I F L L Y T Y N Y A I Y I H F S S C Y T L I I M Q Y T Y I L Y L L V I H L - L C N I H T F Maximal non-overlapping open reading frames (>= 64 codons): >C06HBa0024L21.1-7+_PGL-4_AGS-4_PPS_1 (11665 11949) (frame '2'; 282 bp, 94 residues) 1 QTLAKICQRL SPKNLARHSP FSLASLALYT KVYNSVSVLY KARENCIYTC KNVYLRVIHL 61 IIQFTNILLQ ILQRKRPTNY TIANYTIAVK YNFL- >C06HBa0024L21.1-7+_PGL-4_AGS-4_PPS_2 (11787 12056) (frame '1'; 270 bp, 90 residues) 1 SERKLYIHMQ KCISSCYTLN YTIYKHFTSN IAEKKANKLY NCELYNCSEI QFSLALYNRS 61 VYIVFLFLYK ARKTYIFLLY TYNYAIYIHF 3-phase translation of AGS-4 (-strand): . . . . . . 12057 TAAAATGTATGTATATTGCATAATTATAAGTGTATAACAAGAAGATATATGTTTTTCTCG - N V C I L H N Y K C I T R R Y M F F S K M Y V Y C I I I S V - Q E D I C F S R K C M Y I A - L - V Y N K K I Y V F L . . . . . . 11997 CTTTATACAAAAACAGAAACACAATATATACACTTCTGTTGTATAAAGCTAGAGAAAATT L Y T K T E T Q Y I H F C C I K L E K I F I Q K Q K H N I Y T S V V - S - R K L A L Y K N R N T I Y T L L L Y K A R E N . . . . . . 11937 GTATTTCACTGCAATTGTATAATTCGCAATTGTATAATTTGTTGGCCTTTTTCTCTGCAA V F H C N C I I R N C I I C W P F S L Q Y F T A I V - F A I V - F V G L F L C N C I S L Q L Y N S Q L Y N L L A F F S A . . . . . . 11877 TATTTGAAGTAAAATGTTTGTAAATTGTATAATTAAGTGTATAACACGAAGATATACATT Y L K - N V C K L Y N - V Y N T K I Y I I - S K M F V N C I I K C I T R R Y T F I F E V K C L - I V - L S V - H E D I H . . . . . . 11817 TTTGCATGTGTATATACAATTTTCTCTCGCTTTATACAAAACAGAAACAGAATTATACAC F A C V Y T I F S R F I Q N R N R I I H L H V Y I Q F S L A L Y K T E T E L Y T F C M C I Y N F L S L Y T K Q K Q N Y T . . . . . . 11757 TTTTGTGTATAAAGCGAGAGAGGCGAGCGAGAATGGAGAGTGGCGAGCGAGATTCTTGGG F C V - S E R G E R E W R V A S E I L G F V Y K A R E A S E N G E W R A R F L G L L C I K R E R R A R M E S G E R D S W . . . . . . 11697 AGAGAGACGCTGACAAATTTTAGCTAATGTTTGCTATGGAGCACAATTAAATCAAACCCT R E T L T N F S - C L L W S T I K S N P E R R - Q I L A N V C Y G A Q L N Q T L E R D A D K F - L M F A M E H N - I K P . . . . . 11637 AGCTATTTCATTTAATTTAAGTTATTAGTTTGCTATTATATACAAT S Y F I - F K L L V C Y Y I Q A I S F N L S Y - F A I I Y N - L F H L I - V I S L L L Y T Maximal non-overlapping open reading frames (>= 64 codons): none ... finished at: Mon Jul 24 23:21:23 2006 ________________________________________________________________________________ Sequence 8: C06HBa0024L21.1-8, from 1 to 2263, both strands analyzed. ... started at: Mon Jul 24 23:21:23 2006 EST library file: /tmp/cxgn-bacpublish-resources-MvEQ8q/sgn_ests; matching gDNA +strand ... ... found all matches, elapsed seconds = 5 ... matches indexed, elapsed seconds = 5 HitsTableSize = 17 EST library file: /tmp/cxgn-bacpublish-resources-MvEQ8q/sgn_ests; matching gDNA -strand ... ... found all matches, elapsed seconds = 6 ... matches indexed, elapsed seconds = 6 HitsTableSize = 1 ******************************************************************************** EST sequence 7 +strand 437 n (File: SGN-E336726+) 1 TCACATCTCA CACACAAATT TCATTTTCTA CTTTCACTTT CTCTCTCTAG AAAACAAAAA 61 TGGCGATCAA GGTTCATGGC CCTATGATGT CCCCTGCTGT TATGAGAGTC GTAGCTACAC 121 TCAAAGAGAA AGATCTTGAT TTTGAACTTG TTCCTGTTAA TATGCAAGCT GGTGATCACA 181 AAAAGGAACC ATTCATTTCT CTAAATCCGT TTGGTCAAGT TCCAGCTTTT GAAGATGGAG 241 ATTTAAAGCT TTTTGAGTCA AGAGCTATTA CACAATACAT AGCTCACACA TATGCAGACA 301 AAGGGAACCA ACTTTTACCC AATGACCCAA AGAAAATGGC AGTCATGTCT GTATGGATGG 361 AAGTAGAAGC CCAGAAATTC GACCCCATTG GTTCAAAACT AGGGTTTGAG ATTGTCATTA 421 AGCCAATGTT GGGCATG Predicted gene structure (within gDNA segment 1 to 2263): Exon 1 193 398 ( 206 n); cDNA 1 206 ( 206 n); score: 1.000 Intron 1 399 751 ( 353 n); Pd: 0.991 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 2 752 800 ( 49 n); cDNA 207 255 ( 49 n); score: 1.000 MATCH C06HBa0024L21.1-8+ SGN-E336726+ 1.000 255 0.584 C PGS_C06HBa0024L21.1-8+_SGN-E336726+ (193 398,752 800) Alignment (genomic DNA sequence = upper lines): TCACATCTCA CACACAAATT TCATTTTCTA CTTTCACTTT CTCTCTCTAG AAAACAAAAA 252 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCACATCTCA CACACAAATT TCATTTTCTA CTTTCACTTT CTCTCTCTAG AAAACAAAAA 60 TGGCGATCAA GGTTCATGGC CCTATGATGT CCCCTGCTGT TATGAGAGTC GTAGCTACAC 312 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGCGATCAA GGTTCATGGC CCTATGATGT CCCCTGCTGT TATGAGAGTC GTAGCTACAC 120 TCAAAGAGAA AGATCTTGAT TTTGAACTTG TTCCTGTTAA TATGCAAGCT GGTGATCACA 372 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCAAAGAGAA AGATCTTGAT TTTGAACTTG TTCCTGTTAA TATGCAAGCT GGTGATCACA 180 AAAAGGAACC ATTCATTTCT CTAAATGTAT GTCAATATTC CATAGTATTC AGTTACTGTG 432 |||||||||| |||||||||| |||||| AAAAGGAACC ATTCATTTCT CTAAAT.... .......... .......... .......... 206 CTTCGATTCG AATCGATTCG GTTTATTAAA TGTTAGAATT AGCTTTTTTT GCAGTAAGAT 492 .......... .......... .......... .......... .......... .......... 206 TGTTGCGTAT AATAGATTCG TGTGGTTCAG TAGTTAACTG GAGCTTAGTG CATGCTTTTG 552 .......... .......... .......... .......... .......... .......... 206 ATTTTGTTAT CTTTTTGTGC TCTGTTTTCA TGATGTTTTC AGATCTGTGA AGCGTAAAAG 612 .......... .......... .......... .......... .......... .......... 206 TGAAAATCTC GTTTAAGTTG AGAATTGTGA TCTCTCTCTT ATGTGATTCG AGTCGAGAAA 672 .......... .......... .......... .......... .......... .......... 206 CTGTCACTGT AACTGTAATC ATATGATTTC GAGTCTTAGA AAAAGAGTAT ATACTTATAA 732 .......... .......... .......... .......... .......... .......... 206 TTTTGTTTGA TTTATGCAGC CGTTTGGTCA AGTTCCAGCT TTTGAAGATG GAGATTTAAA 792 | |||||||||| |||||||||| |||||||||| |||||||||| .......... .........C CGTTTGGTCA AGTTCCAGCT TTTGAAGATG GAGATTTAAA 247 GCTTTTTG 800 |||||||| GCTTTTTG 255 hqPGS_C06HBa0024L21.1-8+_SGN-E336726+ (193 398,752 800) ******************************************************************************** EST sequence 3 +strand 591 n (File: SGN-E304236+) 1 ACATCTCACA CACAAATTTC ATTTTCTACT TTCACTTTCT CTCTCTAGAA AACAAAAATG 61 GCGATCAAGG TTCATGGCCC TATGATGTCC CCTGCTGTTA TGAGAGTCGT AGCTACACTC 121 AAAGAGAAAG ATCTTGATTT TGAACTTGTT CCTGTTAATA TGCAAGCTGG TGATCACAAA 181 AAGGAACCAT TCATTTCTCT AAATCCGTTT GGTCAAGTTC CAGCTTTTGA AGATGGAGAT 241 TTAAAGCTTT TTGAGTCAAG AGCTATTACA CAATACATAG CTCACACATA TGCAGACAAA 301 GGGAACCAAC TTTTACCCAA TGACCCAAAG AAAATGGCAG TCATGTCTGT ATGGATGGAA 361 GTAGAAGCCC AGAAATTCGA CCCCATTGGT TCAAAACTAG GGTTTGAGAT TGTCATTAAG 421 CCAATGTTGG GCATGGTGAC TGATGATGCA GTCGTGGCAG AGAACGAAGA GAAACTCGGG 481 AAACTTCTTG ATGTGTATGA ATCTAGACTC AAGGAATCGA AATATTTGGG TGGTGAGAGT 541 TTCACCCTAG CTGATTTGCA CCACGCCCCG TCTTTGCACT ACTTGTCGGG G Predicted gene structure (within gDNA segment 1 to 2263): Exon 1 195 398 ( 204 n); cDNA 1 204 ( 204 n); score: 1.000 Intron 1 399 751 ( 353 n); Pd: 0.991 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 2 752 800 ( 49 n); cDNA 205 253 ( 49 n); score: 1.000 MATCH C06HBa0024L21.1-8+ SGN-E304236+ 1.000 253 0.428 C PGS_C06HBa0024L21.1-8+_SGN-E304236+ (195 398,752 800) Alignment (genomic DNA sequence = upper lines): ACATCTCACA CACAAATTTC ATTTTCTACT TTCACTTTCT CTCTCTAGAA AACAAAAATG 254 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACATCTCACA CACAAATTTC ATTTTCTACT TTCACTTTCT CTCTCTAGAA AACAAAAATG 60 GCGATCAAGG TTCATGGCCC TATGATGTCC CCTGCTGTTA TGAGAGTCGT AGCTACACTC 314 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCGATCAAGG TTCATGGCCC TATGATGTCC CCTGCTGTTA TGAGAGTCGT AGCTACACTC 120 AAAGAGAAAG ATCTTGATTT TGAACTTGTT CCTGTTAATA TGCAAGCTGG TGATCACAAA 374 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAGAGAAAG ATCTTGATTT TGAACTTGTT CCTGTTAATA TGCAAGCTGG TGATCACAAA 180 AAGGAACCAT TCATTTCTCT AAATGTATGT CAATATTCCA TAGTATTCAG TTACTGTGCT 434 |||||||||| |||||||||| |||| AAGGAACCAT TCATTTCTCT AAAT...... .......... .......... .......... 204 TCGATTCGAA TCGATTCGGT TTATTAAATG TTAGAATTAG CTTTTTTTGC AGTAAGATTG 494 .......... .......... .......... .......... .......... .......... 204 TTGCGTATAA TAGATTCGTG TGGTTCAGTA GTTAACTGGA GCTTAGTGCA TGCTTTTGAT 554 .......... .......... .......... .......... .......... .......... 204 TTTGTTATCT TTTTGTGCTC TGTTTTCATG ATGTTTTCAG ATCTGTGAAG CGTAAAAGTG 614 .......... .......... .......... .......... .......... .......... 204 AAAATCTCGT TTAAGTTGAG AATTGTGATC TCTCTCTTAT GTGATTCGAG TCGAGAAACT 674 .......... .......... .......... .......... .......... .......... 204 GTCACTGTAA CTGTAATCAT ATGATTTCGA GTCTTAGAAA AAGAGTATAT ACTTATAATT 734 .......... .......... .......... .......... .......... .......... 204 TTGTTTGATT TATGCAGCCG TTTGGTCAAG TTCCAGCTTT TGAAGATGGA GATTTAAAGC 794 ||| |||||||||| |||||||||| |||||||||| |||||||||| .......... .......CCG TTTGGTCAAG TTCCAGCTTT TGAAGATGGA GATTTAAAGC 247 TTTTTG 800 |||||| TTTTTG 253 hqPGS_C06HBa0024L21.1-8+_SGN-E304236+ (195 398,752 800) ******************************************************************************** EST sequence 11 +strand 599 n (File: SGN-E309123+) 1 ATCTCACACA CAAATTTCAT TTTCTACTTT CACTTTCTCT CTCTAGAAAA CAAAAATGGC 61 GATCAAGGTT CATGGCCCTA TGATGTCCCC TGCTGTTATG AGAGTCGTAG CTACACTCAA 121 AGAGAAAGAT CTTGATTTTG AACTTGTTCC TGTTAATATG CAAGCTGGTG ATCACAAAAA 181 GGAACCATTC ATTTCTCTAA ATCCGTTTGG TCAAGTTCCA GCTTTTGAAG ATGGAGATTT 241 AAAGCTTTTT GAGTCAAGAG CTATTACACA ATACATAGCT CACACATATG CAGACAAAGG 301 GAACCAACTT TTACCCAATG ACCCAAAGAA AATGGCAGTC ATGTCTGTAT GGATGGAAGT 361 AGAAGCCCAG AAATTCGACC CCATTGGTTC AAAACTAGGG TTTGAGATTG TCATTAAGCC 421 AATGTTGGGC ATGGTGACTG ATGATGCAGT CGTGGCAGAG AACGAAGAGA AACTCGGGAA 481 ACTTCTTGAT GTGTATGAAT CTAGACTCAA GGAATCGAAA TATTTGGGTG GTGAGAGTTT 541 CACCCTAGCT GATTTGCACC ACGCCCCGTC TTTGCACTAC TTGTCGGGGA GTAAAGTGA Predicted gene structure (within gDNA segment 1 to 2263): Exon 1 197 398 ( 202 n); cDNA 1 202 ( 202 n); score: 1.000 Intron 1 399 751 ( 353 n); Pd: 0.991 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 2 752 800 ( 49 n); cDNA 203 251 ( 49 n); score: 1.000 MATCH C06HBa0024L21.1-8+ SGN-E309123+ 1.000 251 0.419 C PGS_C06HBa0024L21.1-8+_SGN-E309123+ (197 398,752 800) Alignment (genomic DNA sequence = upper lines): ATCTCACACA CAAATTTCAT TTTCTACTTT CACTTTCTCT CTCTAGAAAA CAAAAATGGC 256 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCTCACACA CAAATTTCAT TTTCTACTTT CACTTTCTCT CTCTAGAAAA CAAAAATGGC 60 GATCAAGGTT CATGGCCCTA TGATGTCCCC TGCTGTTATG AGAGTCGTAG CTACACTCAA 316 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATCAAGGTT CATGGCCCTA TGATGTCCCC TGCTGTTATG AGAGTCGTAG CTACACTCAA 120 AGAGAAAGAT CTTGATTTTG AACTTGTTCC TGTTAATATG CAAGCTGGTG ATCACAAAAA 376 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAGAAAGAT CTTGATTTTG AACTTGTTCC TGTTAATATG CAAGCTGGTG ATCACAAAAA 180 GGAACCATTC ATTTCTCTAA ATGTATGTCA ATATTCCATA GTATTCAGTT ACTGTGCTTC 436 |||||||||| |||||||||| || GGAACCATTC ATTTCTCTAA AT........ .......... .......... .......... 202 GATTCGAATC GATTCGGTTT ATTAAATGTT AGAATTAGCT TTTTTTGCAG TAAGATTGTT 496 .......... .......... .......... .......... .......... .......... 202 GCGTATAATA GATTCGTGTG GTTCAGTAGT TAACTGGAGC TTAGTGCATG CTTTTGATTT 556 .......... .......... .......... .......... .......... .......... 202 TGTTATCTTT TTGTGCTCTG TTTTCATGAT GTTTTCAGAT CTGTGAAGCG TAAAAGTGAA 616 .......... .......... .......... .......... .......... .......... 202 AATCTCGTTT AAGTTGAGAA TTGTGATCTC TCTCTTATGT GATTCGAGTC GAGAAACTGT 676 .......... .......... .......... .......... .......... .......... 202 CACTGTAACT GTAATCATAT GATTTCGAGT CTTAGAAAAA GAGTATATAC TTATAATTTT 736 .......... .......... .......... .......... .......... .......... 202 GTTTGATTTA TGCAGCCGTT TGGTCAAGTT CCAGCTTTTG AAGATGGAGA TTTAAAGCTT 796 ||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... .....CCGTT TGGTCAAGTT CCAGCTTTTG AAGATGGAGA TTTAAAGCTT 247 TTTG 800 |||| TTTG 251 hqPGS_C06HBa0024L21.1-8+_SGN-E309123+ (197 398,752 800) ******************************************************************************** EST sequence 14 +strand 553 n (File: SGN-E290753+) 1 ATCTCACACA CAAATTTCAT TTTCTACTTT CACTTTCTCT CTCTAGAAAA CAAAAATGGC 61 GATCAAGGTT CATGGCCCTA TGATGTCCCC TGCTGTTATG AGAGTCGTAG CTACACTCAA 121 AGAGAAAGAT CTTGATTTTG AACTTGTTCC TGTTAATATG CAAGCTGGTG ATCACAAAAA 181 GGAACCATTC ATTTCTCTAA ATCCGTTTGG TCAAGTTCCA GCTTTTGAAG ATGGAGATTT 241 AAAGCTTTTT GAGTCAAGAG CTATTACACA ATACATAGCT CACACATATG CAGACAAAGG 301 GAACCAACTT TTACCCAATG ACCCAAAGAA AATGGCAGTC ATGTCTGTAT GGATGGAAGT 361 AGAAGCCCAG AAATTCGACC CCATTGGTTC AAAACTAGGG TTTGAGATTG TCATTAAGCC 421 AATGTTGGGC ATGGTGACTG ATGATGCAGT CGTGGCAGAG AACGAAGAGA AACTCGGGAA 481 ACTTCTTGAT GTGTATGAAT CTAGACTCAA GGAATCGAAA TATTTGGGTG GTGAGAGTTT 541 CACCCTAGCT GAT Predicted gene structure (within gDNA segment 1 to 2263): Exon 1 197 398 ( 202 n); cDNA 1 202 ( 202 n); score: 1.000 Intron 1 399 751 ( 353 n); Pd: 0.991 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 2 752 800 ( 49 n); cDNA 203 251 ( 49 n); score: 1.000 MATCH C06HBa0024L21.1-8+ SGN-E290753+ 1.000 251 0.454 C PGS_C06HBa0024L21.1-8+_SGN-E290753+ (197 398,752 800) Alignment (genomic DNA sequence = upper lines): ATCTCACACA CAAATTTCAT TTTCTACTTT CACTTTCTCT CTCTAGAAAA CAAAAATGGC 256 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCTCACACA CAAATTTCAT TTTCTACTTT CACTTTCTCT CTCTAGAAAA CAAAAATGGC 60 GATCAAGGTT CATGGCCCTA TGATGTCCCC TGCTGTTATG AGAGTCGTAG CTACACTCAA 316 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATCAAGGTT CATGGCCCTA TGATGTCCCC TGCTGTTATG AGAGTCGTAG CTACACTCAA 120 AGAGAAAGAT CTTGATTTTG AACTTGTTCC TGTTAATATG CAAGCTGGTG ATCACAAAAA 376 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAGAAAGAT CTTGATTTTG AACTTGTTCC TGTTAATATG CAAGCTGGTG ATCACAAAAA 180 GGAACCATTC ATTTCTCTAA ATGTATGTCA ATATTCCATA GTATTCAGTT ACTGTGCTTC 436 |||||||||| |||||||||| || GGAACCATTC ATTTCTCTAA AT........ .......... .......... .......... 202 GATTCGAATC GATTCGGTTT ATTAAATGTT AGAATTAGCT TTTTTTGCAG TAAGATTGTT 496 .......... .......... .......... .......... .......... .......... 202 GCGTATAATA GATTCGTGTG GTTCAGTAGT TAACTGGAGC TTAGTGCATG CTTTTGATTT 556 .......... .......... .......... .......... .......... .......... 202 TGTTATCTTT TTGTGCTCTG TTTTCATGAT GTTTTCAGAT CTGTGAAGCG TAAAAGTGAA 616 .......... .......... .......... .......... .......... .......... 202 AATCTCGTTT AAGTTGAGAA TTGTGATCTC TCTCTTATGT GATTCGAGTC GAGAAACTGT 676 .......... .......... .......... .......... .......... .......... 202 CACTGTAACT GTAATCATAT GATTTCGAGT CTTAGAAAAA GAGTATATAC TTATAATTTT 736 .......... .......... .......... .......... .......... .......... 202 GTTTGATTTA TGCAGCCGTT TGGTCAAGTT CCAGCTTTTG AAGATGGAGA TTTAAAGCTT 796 ||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... .....CCGTT TGGTCAAGTT CCAGCTTTTG AAGATGGAGA TTTAAAGCTT 247 TTTG 800 |||| TTTG 251 hqPGS_C06HBa0024L21.1-8+_SGN-E290753+ (197 398,752 800) ******************************************************************************** EST sequence 5 +strand 577 n (File: SGN-E312205+) 1 TCACACACAA ATTTCATTTT CTACTTTCAC TTTCTCTCTC TAGAAAACAA AAATGGCGAT 61 CAAGGTTCAT GGCCCTATGA TGTCCCCTGC TGTTATGAGA GTCGTAGCTA CACTCAAAGA 121 GAAAGATCTT GATTTTGAAC TTGTTCCTGT TAATATGCAA GCTGGTGATC ACAAAAAGGA 181 ACCATTCATT TCTCTAAATC CGTTTGGTCA AGTTCCAGCT TTTGAAGATG GAGATTTAAA 241 GCTTTTTGAG TCAAGAGCTA TTACACAATA CATAGCTCAC ACATATGCAG ACAAAGGGAA 301 CCAACTTTTA CCCAATGACC CAAAGAAAAT GGCAGTCATG TCTGTATGGA TGGAAGTAGA 361 AGCCCAGAAA TTCGACCCCA TTGGTTCAAA ACTAGGGTTT GAGATTGTCA TTAAGCCAAT 421 GTTGGGCATG GTGACTGATG ATGCAGTCGT GGCAGAGAAC GAAGAGAAAC TCGGGAAACT 481 TCTTGATGTG TATGAATCTA GACTCAAGGA ATCGAAATAT TTGGGTGGTG AGAGTTTCAC 541 CCTAGCTGAT TTGCACCACG CCCCGTCTTT GCACTAC Predicted gene structure (within gDNA segment 1 to 2263): Exon 1 200 398 ( 199 n); cDNA 1 199 ( 199 n); score: 1.000 Intron 1 399 751 ( 353 n); Pd: 0.991 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 2 752 800 ( 49 n); cDNA 200 248 ( 49 n); score: 1.000 MATCH C06HBa0024L21.1-8+ SGN-E312205+ 1.000 248 0.430 C PGS_C06HBa0024L21.1-8+_SGN-E312205+ (200 398,752 800) Alignment (genomic DNA sequence = upper lines): TCACACACAA ATTTCATTTT CTACTTTCAC TTTCTCTCTC TAGAAAACAA AAATGGCGAT 259 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCACACACAA ATTTCATTTT CTACTTTCAC TTTCTCTCTC TAGAAAACAA AAATGGCGAT 60 CAAGGTTCAT GGCCCTATGA TGTCCCCTGC TGTTATGAGA GTCGTAGCTA CACTCAAAGA 319 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAGGTTCAT GGCCCTATGA TGTCCCCTGC TGTTATGAGA GTCGTAGCTA CACTCAAAGA 120 GAAAGATCTT GATTTTGAAC TTGTTCCTGT TAATATGCAA GCTGGTGATC ACAAAAAGGA 379 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAAGATCTT GATTTTGAAC TTGTTCCTGT TAATATGCAA GCTGGTGATC ACAAAAAGGA 180 ACCATTCATT TCTCTAAATG TATGTCAATA TTCCATAGTA TTCAGTTACT GTGCTTCGAT 439 |||||||||| ||||||||| ACCATTCATT TCTCTAAAT. .......... .......... .......... .......... 199 TCGAATCGAT TCGGTTTATT AAATGTTAGA ATTAGCTTTT TTTGCAGTAA GATTGTTGCG 499 .......... .......... .......... .......... .......... .......... 199 TATAATAGAT TCGTGTGGTT CAGTAGTTAA CTGGAGCTTA GTGCATGCTT TTGATTTTGT 559 .......... .......... .......... .......... .......... .......... 199 TATCTTTTTG TGCTCTGTTT TCATGATGTT TTCAGATCTG TGAAGCGTAA AAGTGAAAAT 619 .......... .......... .......... .......... .......... .......... 199 CTCGTTTAAG TTGAGAATTG TGATCTCTCT CTTATGTGAT TCGAGTCGAG AAACTGTCAC 679 .......... .......... .......... .......... .......... .......... 199 TGTAACTGTA ATCATATGAT TTCGAGTCTT AGAAAAAGAG TATATACTTA TAATTTTGTT 739 .......... .......... .......... .......... .......... .......... 199 TGATTTATGC AGCCGTTTGG TCAAGTTCCA GCTTTTGAAG ATGGAGATTT AAAGCTTTTT 799 |||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ..CCGTTTGG TCAAGTTCCA GCTTTTGAAG ATGGAGATTT AAAGCTTTTT 247 G 800 | G 248 hqPGS_C06HBa0024L21.1-8+_SGN-E312205+ (200 398,752 800) ******************************************************************************** EST sequence 8 +strand 558 n (File: SGN-E318444+) 1 TCACACACAA ATTTCATTGT CTACTTTCAC TTTCTCTCTC TAGAAAACAA AAATGGCGAT 61 CAAGGTTCAT GGCCCTATGA TGTCCCCTGC TGTTATGAGA GTCGTAGCTA CACTCAAAGA 121 GAAAGATCTT GATTTTGAAC TTGTTCCTGT TAATATGCAA GCTGGTGATC ACAAAAAGGA 181 ACCATTCATT TCTCTAAATC CGTTTGGTCA AGTTCCAGCT TTTGAAGATG GAGATTTAAA 241 GCTTTTTGAG TCAAGAGCTA TTACACAATA CATAGCTCAC ACATATGCGG ACAAAGGGAA 301 CCAACTTTTA CCCAATGACC CCACGAAAAT GGCAGTCATG TCTGTATGGA TGGAAGTAGA 361 AGCCCAGAAA TTCGACCCCA TTGGTTCAAA ACTAGGGTTT GAGATTGTCA TTAAGCCAAT 421 GTTGGGCATG GTGACTGATG ATGCAATCGT GGCAGAGAAC GAAGAGAAAC TCGGGAAACT 481 TCTTGATGTG TATGAATCTA GACTCAAGGA ATCGAAATAT TTGGGTGGTG AGAGATTCAC 541 CCTAGCTGAT TTGCACCA Predicted gene structure (within gDNA segment 1 to 2263): Exon 1 200 398 ( 199 n); cDNA 1 199 ( 199 n); score: 0.995 Intron 1 399 751 ( 353 n); Pd: 0.991 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 2 752 800 ( 49 n); cDNA 200 248 ( 49 n); score: 1.000 MATCH C06HBa0024L21.1-8+ SGN-E318444+ 0.995 248 0.444 C PGS_C06HBa0024L21.1-8+_SGN-E318444+ (200 398,752 800) Alignment (genomic DNA sequence = upper lines): TCACACACAA ATTTCATTTT CTACTTTCAC TTTCTCTCTC TAGAAAACAA AAATGGCGAT 259 |||||||||| |||||||| | |||||||||| |||||||||| |||||||||| |||||||||| TCACACACAA ATTTCATTGT CTACTTTCAC TTTCTCTCTC TAGAAAACAA AAATGGCGAT 60 CAAGGTTCAT GGCCCTATGA TGTCCCCTGC TGTTATGAGA GTCGTAGCTA CACTCAAAGA 319 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAGGTTCAT GGCCCTATGA TGTCCCCTGC TGTTATGAGA GTCGTAGCTA CACTCAAAGA 120 GAAAGATCTT GATTTTGAAC TTGTTCCTGT TAATATGCAA GCTGGTGATC ACAAAAAGGA 379 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAAGATCTT GATTTTGAAC TTGTTCCTGT TAATATGCAA GCTGGTGATC ACAAAAAGGA 180 ACCATTCATT TCTCTAAATG TATGTCAATA TTCCATAGTA TTCAGTTACT GTGCTTCGAT 439 |||||||||| ||||||||| ACCATTCATT TCTCTAAAT. .......... .......... .......... .......... 199 TCGAATCGAT TCGGTTTATT AAATGTTAGA ATTAGCTTTT TTTGCAGTAA GATTGTTGCG 499 .......... .......... .......... .......... .......... .......... 199 TATAATAGAT TCGTGTGGTT CAGTAGTTAA CTGGAGCTTA GTGCATGCTT TTGATTTTGT 559 .......... .......... .......... .......... .......... .......... 199 TATCTTTTTG TGCTCTGTTT TCATGATGTT TTCAGATCTG TGAAGCGTAA AAGTGAAAAT 619 .......... .......... .......... .......... .......... .......... 199 CTCGTTTAAG TTGAGAATTG TGATCTCTCT CTTATGTGAT TCGAGTCGAG AAACTGTCAC 679 .......... .......... .......... .......... .......... .......... 199 TGTAACTGTA ATCATATGAT TTCGAGTCTT AGAAAAAGAG TATATACTTA TAATTTTGTT 739 .......... .......... .......... .......... .......... .......... 199 TGATTTATGC AGCCGTTTGG TCAAGTTCCA GCTTTTGAAG ATGGAGATTT AAAGCTTTTT 799 |||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ..CCGTTTGG TCAAGTTCCA GCTTTTGAAG ATGGAGATTT AAAGCTTTTT 247 G 800 | G 248 hqPGS_C06HBa0024L21.1-8+_SGN-E318444+ (200 398,752 800) ******************************************************************************** EST sequence 15 +strand 574 n (File: SGN-E283551+) 1 TCATTTTCTA CTTTCACTTT CTCTCTCTAG AAAACAAAAA TGGCGATCAA GGTTCATGGC 61 CCTATGATGT CCCCTGCTGT TATGAGAGTC GTAGCTACAC TCAAAGAGAA AGATCTTGAT 121 TTTGAACTTG TTCCTGTTAA TATGCAAGCT GGTGATCACA AAAAGGAACC ATTCATTTCT 181 CTAAATCCGT TTGGTCAAGT TCCAGCTTTT GAAGATGGAG ATTTAAAGCT TTTTGAGTCA 241 AGAGCTATTA CACAATACAT AGCTCACACA TATGCAGACA AAGGGAACCA ACTTTTACCC 301 AATGACCCAA AGAAAATGGC AGTCATGTCT GTATGGATGG AAGTAGAAGC CCAGAAATTC 361 GACCCCATTG GTTCAAAACT AGGGTTTGAG ATTGTCATTA AGCCAATGTT GGGCATGGTG 421 ACTGATGATG CAGTCGTGGC AGAGAACGAA GAGAAACTCG GGAAACTTCT TGATGTGTAT 481 GAATCTAGAC TCAAGGAATC GAAATATTTG GGTGGTGAGA GTTTCACCCT AGCTGATTTG 541 CACCACGCCC CGTCTTTGCA CTACTTGTCG GGGA Predicted gene structure (within gDNA segment 1 to 2263): Exon 1 213 398 ( 186 n); cDNA 1 186 ( 186 n); score: 1.000 Intron 1 399 751 ( 353 n); Pd: 0.991 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 2 752 800 ( 49 n); cDNA 187 235 ( 49 n); score: 1.000 MATCH C06HBa0024L21.1-8+ SGN-E283551+ 1.000 235 0.409 C PGS_C06HBa0024L21.1-8+_SGN-E283551+ (213 398,752 800) Alignment (genomic DNA sequence = upper lines): TCATTTTCTA CTTTCACTTT CTCTCTCTAG AAAACAAAAA TGGCGATCAA GGTTCATGGC 272 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCATTTTCTA CTTTCACTTT CTCTCTCTAG AAAACAAAAA TGGCGATCAA GGTTCATGGC 60 CCTATGATGT CCCCTGCTGT TATGAGAGTC GTAGCTACAC TCAAAGAGAA AGATCTTGAT 332 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCTATGATGT CCCCTGCTGT TATGAGAGTC GTAGCTACAC TCAAAGAGAA AGATCTTGAT 120 TTTGAACTTG TTCCTGTTAA TATGCAAGCT GGTGATCACA AAAAGGAACC ATTCATTTCT 392 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTGAACTTG TTCCTGTTAA TATGCAAGCT GGTGATCACA AAAAGGAACC ATTCATTTCT 180 CTAAATGTAT GTCAATATTC CATAGTATTC AGTTACTGTG CTTCGATTCG AATCGATTCG 452 |||||| CTAAAT.... .......... .......... .......... .......... .......... 186 GTTTATTAAA TGTTAGAATT AGCTTTTTTT GCAGTAAGAT TGTTGCGTAT AATAGATTCG 512 .......... .......... .......... .......... .......... .......... 186 TGTGGTTCAG TAGTTAACTG GAGCTTAGTG CATGCTTTTG ATTTTGTTAT CTTTTTGTGC 572 .......... .......... .......... .......... .......... .......... 186 TCTGTTTTCA TGATGTTTTC AGATCTGTGA AGCGTAAAAG TGAAAATCTC GTTTAAGTTG 632 .......... .......... .......... .......... .......... .......... 186 AGAATTGTGA TCTCTCTCTT ATGTGATTCG AGTCGAGAAA CTGTCACTGT AACTGTAATC 692 .......... .......... .......... .......... .......... .......... 186 ATATGATTTC GAGTCTTAGA AAAAGAGTAT ATACTTATAA TTTTGTTTGA TTTATGCAGC 752 | .......... .......... .......... .......... .......... .........C 187 CGTTTGGTCA AGTTCCAGCT TTTGAAGATG GAGATTTAAA GCTTTTTG 800 |||||||||| |||||||||| |||||||||| |||||||||| |||||||| CGTTTGGTCA AGTTCCAGCT TTTGAAGATG GAGATTTAAA GCTTTTTG 235 hqPGS_C06HBa0024L21.1-8+_SGN-E283551+ (213 398,752 800) ******************************************************************************** EST sequence 4 +strand 539 n (File: SGN-E252214+) 1 AAAACAAAAA TGGCGATCAA GGTTCATGGC CCTATGATGT CCCCTGCTGT TATGAGAGTC 61 GTAGCTACAC TCAAAGAGAA AGATCTTGAT TTTGAACTTG TTCCTGTTAA TATGCAAGCT 121 GGTGATCACA AAAAGGAACC ATTCATTTCT CTAAATCCGT TTGGTCAAGT TCCAGCTTTT 181 GAAGATGGAG ATTTAAAGCT TTTTGAGTCA AGAGCTATTA CACAATACAT AGCTCACACA 241 TATGCAGACA AAGGGAACCA ACTTTTACCC AATGACCCAA AGAAAATGGC AGTCATGTCT 301 GTATGGATGG AAGTAGAAGC CCAGAAATTC GACCCCATTG GTTCAAAACT AGGGTTTGAG 361 ATTGTCATTA AGCCAATGTT GGGCATGGTG ACTGATGATG CAGTCGTGGC AGAGAACGAA 421 GAGAAACTCG GGAAACTTCT TGATGTGTAT GAATCTAGAC TCAAGGAATC GAAATATTTG 481 GGTGGTGAGA GTTTCACCCT AGCTGATTTG CACCACGCCC CGTCTTTGCA CTACTTGTC Predicted gene structure (within gDNA segment 1 to 2263): Exon 1 243 398 ( 156 n); cDNA 1 156 ( 156 n); score: 1.000 Intron 1 399 751 ( 353 n); Pd: 0.991 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 2 752 800 ( 49 n); cDNA 157 205 ( 49 n); score: 1.000 MATCH C06HBa0024L21.1-8+ SGN-E252214+ 1.000 205 0.380 C PGS_C06HBa0024L21.1-8+_SGN-E252214+ (243 398,752 800) Alignment (genomic DNA sequence = upper lines): AAAACAAAAA TGGCGATCAA GGTTCATGGC CCTATGATGT CCCCTGCTGT TATGAGAGTC 302 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAACAAAAA TGGCGATCAA GGTTCATGGC CCTATGATGT CCCCTGCTGT TATGAGAGTC 60 GTAGCTACAC TCAAAGAGAA AGATCTTGAT TTTGAACTTG TTCCTGTTAA TATGCAAGCT 362 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTAGCTACAC TCAAAGAGAA AGATCTTGAT TTTGAACTTG TTCCTGTTAA TATGCAAGCT 120 GGTGATCACA AAAAGGAACC ATTCATTTCT CTAAATGTAT GTCAATATTC CATAGTATTC 422 |||||||||| |||||||||| |||||||||| |||||| GGTGATCACA AAAAGGAACC ATTCATTTCT CTAAAT.... .......... .......... 156 AGTTACTGTG CTTCGATTCG AATCGATTCG GTTTATTAAA TGTTAGAATT AGCTTTTTTT 482 .......... .......... .......... .......... .......... .......... 156 GCAGTAAGAT TGTTGCGTAT AATAGATTCG TGTGGTTCAG TAGTTAACTG GAGCTTAGTG 542 .......... .......... .......... .......... .......... .......... 156 CATGCTTTTG ATTTTGTTAT CTTTTTGTGC TCTGTTTTCA TGATGTTTTC AGATCTGTGA 602 .......... .......... .......... .......... .......... .......... 156 AGCGTAAAAG TGAAAATCTC GTTTAAGTTG AGAATTGTGA TCTCTCTCTT ATGTGATTCG 662 .......... .......... .......... .......... .......... .......... 156 AGTCGAGAAA CTGTCACTGT AACTGTAATC ATATGATTTC GAGTCTTAGA AAAAGAGTAT 722 .......... .......... .......... .......... .......... .......... 156 ATACTTATAA TTTTGTTTGA TTTATGCAGC CGTTTGGTCA AGTTCCAGCT TTTGAAGATG 782 | |||||||||| |||||||||| |||||||||| .......... .......... .........C CGTTTGGTCA AGTTCCAGCT TTTGAAGATG 187 GAGATTTAAA GCTTTTTG 800 |||||||||| |||||||| GAGATTTAAA GCTTTTTG 205 hqPGS_C06HBa0024L21.1-8+_SGN-E252214+ (243 398,752 800) ******************************************************************************** EST sequence 13 +strand 367 n (File: SGN-E278586+) 1 GAACTTGTTC CTGTTAATAT GCAAGCTGGT GATCACAAAA AGGAACCATT CATTTCTCTA 61 AATCCGTTTG GTCAAGTTCC AGCTTTTGAA GATGGAGATT TAAAGCTTTT TGAGTCAAGA 121 GCTATTACAC AATACATAGC TCACACATAT GCAGACAAAG GGAACCAACT TTTACCCAAT 181 GACCCAAAGA AAATGGCAGT CATGTCTGTA TGGATGGAAG TAGAAGCCCA GAAATTCGAC 241 CCCATTGGTT CAAAACTAGG GTTTGAGATT GTCATTAAGC CAATGTTGGG CATGGCGACT 301 GATGATGCAG TCGTGGCTCA GAACGAAGAG AAACTCGGGA AACTTCTTGA TGTGTATGAA 361 TCTAGAC Predicted gene structure (within gDNA segment 1 to 2263): Exon 1 336 398 ( 63 n); cDNA 1 63 ( 63 n); score: 1.000 Intron 1 399 751 ( 353 n); Pd: 0.991 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 2 752 800 ( 49 n); cDNA 64 112 ( 49 n); score: 1.000 MATCH C06HBa0024L21.1-8+ SGN-E278586+ 1.000 112 0.305 C PGS_C06HBa0024L21.1-8+_SGN-E278586+ (336 398,752 800) Alignment (genomic DNA sequence = upper lines): GAACTTGTTC CTGTTAATAT GCAAGCTGGT GATCACAAAA AGGAACCATT CATTTCTCTA 395 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAACTTGTTC CTGTTAATAT GCAAGCTGGT GATCACAAAA AGGAACCATT CATTTCTCTA 60 AATGTATGTC AATATTCCAT AGTATTCAGT TACTGTGCTT CGATTCGAAT CGATTCGGTT 455 ||| AAT....... .......... .......... .......... .......... .......... 63 TATTAAATGT TAGAATTAGC TTTTTTTGCA GTAAGATTGT TGCGTATAAT AGATTCGTGT 515 .......... .......... .......... .......... .......... .......... 63 GGTTCAGTAG TTAACTGGAG CTTAGTGCAT GCTTTTGATT TTGTTATCTT TTTGTGCTCT 575 .......... .......... .......... .......... .......... .......... 63 GTTTTCATGA TGTTTTCAGA TCTGTGAAGC GTAAAAGTGA AAATCTCGTT TAAGTTGAGA 635 .......... .......... .......... .......... .......... .......... 63 ATTGTGATCT CTCTCTTATG TGATTCGAGT CGAGAAACTG TCACTGTAAC TGTAATCATA 695 .......... .......... .......... .......... .......... .......... 63 TGATTTCGAG TCTTAGAAAA AGAGTATATA CTTATAATTT TGTTTGATTT ATGCAGCCGT 755 |||| .......... .......... .......... .......... .......... ......CCGT 67 TTGGTCAAGT TCCAGCTTTT GAAGATGGAG ATTTAAAGCT TTTTG 800 |||||||||| |||||||||| |||||||||| |||||||||| ||||| TTGGTCAAGT TCCAGCTTTT GAAGATGGAG ATTTAAAGCT TTTTG 112 hqPGS_C06HBa0024L21.1-8+_SGN-E278586+ (336 398,752 800) ******************************************************************************** EST sequence 9 +strand 685 n (File: SGN-E542931+) 1 ACCAACTATG ACGACATGAA ATATGCTATA AAAAAACTTG ATGAATCTGA GTTTCGGAAT 61 GCTTTTTCTC GTTCAACAAT TCGGGTGAAG GAACATGATT CTAGAAGCCG CAGCCGCAGC 121 CGTTCTTACT CGAGAGGAAA GAGTGGTAGC CGTAGCCGCA GTCGAAGTTA CAGTCGCAGC 181 CGGAGCAGAA GCAAATCTCC TAAAGCTAAG TCGTCAAAGC GTACAAGATC TCGTTCTAGA 241 TCTGTCTCTT CTCAGCCCCG TTCTGGGTTA AAAGGACGCT CTTTGTCAAG GTAATCTTTC 301 TTACTGGTCA TATCTACCCA TTTTGTTGTT GGGGCAGGTT ATGTAAAAGT AGCATATAGT 361 ACAAGGTTAA TGTATATTTT TATGCAAGTC CTTGTACTGG TCTTTTTTTG AGTCAAAAGT 421 CCTTGTGTCT ATCAGTTTAT CTTAATCATT TTAATCTTTT CTTTGTGAAA GCCACCTGGG 481 AATTAACTGT TGCATCTTGC ACCTCATTTA TTTAGTGGGA AATCAGCTGA GCACTTTGTT 541 TCCAACCCTT AATCTTGACT AGACTTTGTA TAGTTGTGGA CATGAGATGG CTTTGAAGCA 601 AAAAGTTGTT TTGCAGTGTG ACCAATTTAA CATTTTCACA CAAGTTGGGT TGTAAATTTC 661 ACAAATTCAA ATTGCAAATT GCATC Predicted gene structure (within gDNA segment 1 to 2263): Exon 1 1095 1201 ( 107 n); cDNA 85 191 ( 107 n); score: 1.000 Intron 1 1202 1289 ( 88 n); Pd: 1.000 (s: 1.00), Pa: 0.429 (s: 1.00) Exon 2 1290 1783 ( 494 n); cDNA 192 685 ( 494 n); score: 0.993 MATCH C06HBa0024L21.1-8+ SGN-E542931+ 0.994 601 0.877 C PGS_C06HBa0024L21.1-8+_SGN-E542931+ (1095 1201,1290 1783) Alignment (genomic DNA sequence = upper lines): GTGAAGGAAC ATGATTCTAG AAGCCGCAGC CGCAGCCGTT CTTACTCGAG AGGAAAGAGT 1154 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGAAGGAAC ATGATTCTAG AAGCCGCAGC CGCAGCCGTT CTTACTCGAG AGGAAAGAGT 144 GGTAGCCGTA GCCGCAGTCG AAGTTACAGT CGCAGCCGGA GCAGAAGGTA TGTATTATGT 1214 |||||||||| |||||||||| |||||||||| |||||||||| ||||||| GGTAGCCGTA GCCGCAGTCG AAGTTACAGT CGCAGCCGGA GCAGAAG... .......... 191 AGTTTGCACG TTTTATAGCT TGTTACTTCA CCTTTGAATG CTACTATGTA TCTCATTGCT 1274 .......... .......... .......... .......... .......... .......... 191 GCTCTTTCCT AGCAGCAAAT CTCCTAAAGC TAAGTCGTCA AAGCGTACAA GATCTCGTTC 1334 ||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... .....CAAAT CTCCTAAAGC TAAGTCGTCA AAGCGTACAA GATCTCGTTC 236 TAGATCTGTC TCTTCTCAGC CCCGTTCTGG GTTAAAAGGA CGCTCTTTGT CAAGGTAATC 1394 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAGATCTGTC TCTTCTCAGC CCCGTTCTGG GTTAAAAGGA CGCTCTTTGT CAAGGTAATC 296 TTTCTTACTG GTCATATCTA CCCATTTTGT TGTTGGGGCA GGTTATGTAA AAGTAGCATA 1454 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTCTTACTG GTCATATCTA CCCATTTTGT TGTTGGGGCA GGTTATGTAA AAGTAGCATA 356 TAGTACAAGG TTAATGTATA TTTTTATGCA AGTCCTTGTA CTGGTCTTTT TTTTGAGTCA 1514 |||||||||| |||||||||| |||||||||| |||||||||| |||||| ||| |||||||||| TAGTACAAGG TTAATGTATA TTTTTATGCA AGTCCTTGTA CTGGTC-TTT TTTTGAGTCA 415 AAAGTCCTTG TGTCTATCAG TTTATCTTAA TCATTTTAAT CTTTTCTTTG TGAAAGCCAC 1574 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAGTCCTTG TGTCTATCAG TTTATCTTAA TCATTTTAAT CTTTTCTTTG TGAAAGCCAC 475 CTGGGAATTA ACTGTTGCAT CTTGCACCTC ATTTATTTAG TGGGAAATCA GCTGAGCACT 1634 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGGGAATTA ACTGTTGCAT CTTGCACCTC ATTTATTTAG TGGGAAATCA GCTGAGCACT 535 TTGTTTCCAA CCCTTAATCT TGACTAGACT TTGTATAGTT GTGGACATGA GATGGCTTTG 1694 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGTTTCCAA CCCTTAATCT TGACTAGACT TTGTATAGTT GTGGACATGA GATGGCTTTG 595 AAGCAAAAAG TTGTTTTGCA GTGTGACCAA TTTAACATTT TCACACAAGT T-GGTTGTAA 1753 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| | |||||||| AAGCAAAAAG TTGTTTTGCA GTGTGACCAA TTTAACATTT TCACACAAGT TGGGTTGTAA 655 ATTTCACAAA TTCAAATTGC AAATTGCATC 1783 |||||||||| |||||||||| |||||||||| ATTTCACAAA TTCAAATTGC AAATTGCATC 685 hqPGS_C06HBa0024L21.1-8+_SGN-E542931+ (1095 1201,1290 1783) ******************************************************************************** EST sequence 16 +strand 583 n (File: SGN-E303030+) 1 CCAACTATGA CGACATGAAA TAGGGTATAA TAAAACTTGA TGAATCTGAG TTCCCGAATG 61 CTTTTTCTCG TTCAACAATT CGGGTGAAGG AACATGATTC TAGAAGCCGC AGCCGCAGCC 121 GTTCTTACTC GAGAGGAAAG AGTGGTAGCC GTAGCCGCAG TCGAAGTTAC AGTCGCAGCC 181 GGAGCAGAAG CAAATCTCCT AAAGCTAAGT CGCCAAAGCG TACAAGATCT CGTTCTAGAT 241 CTGTCTCTTC TCAGCCCCGT TCTGGGTTAA AAGGACGCTC TTTGTCAAGG TAATCTTTAT 301 TACTGGTCAT ATCTACCCAT TTTGTTGAAG GGGCAGGTTA TGTAAAAGTA GCATATAGTA 361 CAAGGTTAAT GTATATTTTT ATGCAAGTCC TTGTACTGGT CTTTTTTTGA GTCAAAAGTC 421 CTTGTGTCTA TCAGTTTATC TTAATCATTT TAATCTTTTC TTTGTGAAAG CCACCTGGGA 481 ATTAACTGTT GCATCTTGCA CCTCATATAT TTAGTGGGAA ATCACCTGAG CACTTTGTTT 541 CCAACCCTTA ATCTTGACTA AACTTTGTAT AGGTGTGGAC ATG Predicted gene structure (within gDNA segment 1 to 2263): Exon 1 1095 1201 ( 107 n); cDNA 84 190 ( 107 n); score: 1.000 Intron 1 1202 1289 ( 88 n); Pd: 1.000 (s: 1.00), Pa: 0.429 (s: 0.98) Exon 2 1290 1683 ( 394 n); cDNA 191 583 ( 393 n); score: 0.977 MATCH C06HBa0024L21.1-8+ SGN-E303030+ 0.982 501 0.859 C PGS_C06HBa0024L21.1-8+_SGN-E303030+ (1095 1201,1290 1683) Alignment (genomic DNA sequence = upper lines): GTGAAGGAAC ATGATTCTAG AAGCCGCAGC CGCAGCCGTT CTTACTCGAG AGGAAAGAGT 1154 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGAAGGAAC ATGATTCTAG AAGCCGCAGC CGCAGCCGTT CTTACTCGAG AGGAAAGAGT 143 GGTAGCCGTA GCCGCAGTCG AAGTTACAGT CGCAGCCGGA GCAGAAGGTA TGTATTATGT 1214 |||||||||| |||||||||| |||||||||| |||||||||| ||||||| GGTAGCCGTA GCCGCAGTCG AAGTTACAGT CGCAGCCGGA GCAGAAG... .......... 190 AGTTTGCACG TTTTATAGCT TGTTACTTCA CCTTTGAATG CTACTATGTA TCTCATTGCT 1274 .......... .......... .......... .......... .......... .......... 190 GCTCTTTCCT AGCAGCAAAT CTCCTAAAGC TAAGTCGTCA AAGCGTACAA GATCTCGTTC 1334 ||||| |||||||||| ||||||| || |||||||||| |||||||||| .......... .....CAAAT CTCCTAAAGC TAAGTCGCCA AAGCGTACAA GATCTCGTTC 235 TAGATCTGTC TCTTCTCAGC CCCGTTCTGG GTTAAAAGGA CGCTCTTTGT CAAGGTAATC 1394 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAGATCTGTC TCTTCTCAGC CCCGTTCTGG GTTAAAAGGA CGCTCTTTGT CAAGGTAATC 295 TTTCTTACTG GTCATATCTA CCCATTTTGT TGTTGGGGCA GGTTATGTAA AAGTAGCATA 1454 ||| |||||| |||||||||| |||||||||| || |||||| |||||||||| |||||||||| TTTATTACTG GTCATATCTA CCCATTTTGT TGAAGGGGCA GGTTATGTAA AAGTAGCATA 355 TAGTACAAGG TTAATGTATA TTTTTATGCA AGTCCTTGTA CTGGTCTTTT TTTTGAGTCA 1514 |||||||||| |||||||||| |||||||||| |||||||||| |||||| ||| |||||||||| TAGTACAAGG TTAATGTATA TTTTTATGCA AGTCCTTGTA CTGGTC-TTT TTTTGAGTCA 414 AAAGTCCTTG TGTCTATCAG TTTATCTTAA TCATTTTAAT CTTTTCTTTG TGAAAGCCAC 1574 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAGTCCTTG TGTCTATCAG TTTATCTTAA TCATTTTAAT CTTTTCTTTG TGAAAGCCAC 474 CTGGGAATTA ACTGTTGCAT CTTGCACCTC ATTTATTTAG TGGGAAATCA GCTGAGCACT 1634 |||||||||| |||||||||| |||||||||| || ||||||| |||||||||| ||||||||| CTGGGAATTA ACTGTTGCAT CTTGCACCTC ATATATTTAG TGGGAAATCA CCTGAGCACT 534 TTGTTTCCAA CCCTTAATCT TGACTAGACT TTGTATAGTT GTGGACATG 1683 |||||||||| |||||||||| |||||| ||| |||||||| | ||||||||| TTGTTTCCAA CCCTTAATCT TGACTAAACT TTGTATAGGT GTGGACATG 583 hqPGS_C06HBa0024L21.1-8+_SGN-E303030+ (1095 1201,1290 1683) ******************************************************************************** EST sequence 2 +strand 537 n (File: SGN-E201707+) 1 TATGCTATAA AAAAACTTGA TGAATCTGAG TTTCGGAATG CTTTTTCTCG TTCAACAATT 61 CGGGTGAAGG AACATGATTC TAGAAGCCGC ATCCGCAGCC GTTCTTACTC GAGAGGAAAG 121 AGTGGTAGCC GTAGCCGCAG TCGAAGTTAC AGTCGCAGCC GGAGCAGAAG CAAATCTCCT 181 AAAGCTAAGT CGTCAAAGCG TACAAGATCT CGTTCTAGAT CTGGCTCTTC TCAGCCCCGT 241 TCTGGGTTAA AAGGACGCTC TTTGTCAAGA TCTCCATCAA GATCCAGATC CCCAGTACCG 301 TCTCGCCCAA AACGTGTGAG CAAAAGCCCA AAACCTCGCG ACTCCAGGAG AAGCCAGAGC 361 TTGAGTAAAA GCCCAAAACC TCGTGATTCC AGGAGAAGCG AGAGTCCAAG CAAGAGCCCC 421 AAACTGCGTG ATTCCAGGAG AAGCAAGAGC GTGAGTAAAA GCCCCGAACC ACGCAATTCC 481 AGGAGGAGCC CCAGCAGGAG CAAAAGCCCC AAACCACGCA ATTCCAGGAG AAGCCCT Predicted gene structure (within gDNA segment 1 to 2263): Exon 1 1095 1201 ( 107 n); cDNA 64 170 ( 107 n); score: 0.991 Intron 1 1202 1289 ( 88 n); Pd: 1.000 (s: 1.00), Pa: 0.429 (s: 1.00) Exon 2 1290 1388 ( 99 n); cDNA 171 269 ( 99 n); score: 0.990 Intron 2 1389 2017 ( 629 n); Pd: 0.995 (s: 0.98), Pa: 0.538 (s: 0) Exon 3 2018 2045 ( 28 n); cDNA 270 296 ( 27 n); score: 0.607 MATCH C06HBa0024L21.1-8+ SGN-E201707+ 0.990 234 0.436 C PGS_C06HBa0024L21.1-8+_SGN-E201707+ (1095 1201,1290 1388,2018 2045) Alignment (genomic DNA sequence = upper lines): GTGAAGGAAC ATGATTCTAG AAGCCGCAGC CGCAGCCGTT CTTACTCGAG AGGAAAGAGT 1154 |||||||||| |||||||||| |||||||| | |||||||||| |||||||||| |||||||||| GTGAAGGAAC ATGATTCTAG AAGCCGCATC CGCAGCCGTT CTTACTCGAG AGGAAAGAGT 123 GGTAGCCGTA GCCGCAGTCG AAGTTACAGT CGCAGCCGGA GCAGAAGGTA TGTATTATGT 1214 |||||||||| |||||||||| |||||||||| |||||||||| ||||||| GGTAGCCGTA GCCGCAGTCG AAGTTACAGT CGCAGCCGGA GCAGAAG... .......... 170 AGTTTGCACG TTTTATAGCT TGTTACTTCA CCTTTGAATG CTACTATGTA TCTCATTGCT 1274 .......... .......... .......... .......... .......... .......... 170 GCTCTTTCCT AGCAGCAAAT CTCCTAAAGC TAAGTCGTCA AAGCGTACAA GATCTCGTTC 1334 ||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... .....CAAAT CTCCTAAAGC TAAGTCGTCA AAGCGTACAA GATCTCGTTC 215 TAGATCTGTC TCTTCTCAGC CCCGTTCTGG GTTAAAAGGA CGCTCTTTGT CAAGGTAATC 1394 |||||||| | |||||||||| |||||||||| |||||||||| |||||||||| |||| TAGATCTGGC TCTTCTCAGC CCCGTTCTGG GTTAAAAGGA CGCTCTTTGT CAAG...... 269 TTTCTTACTG GTCATATCTA CCCATTTTGT TGTTGGGGCA GGTTATGTAA AAGTAGCATA 1454 .......... .......... .......... .......... .......... .......... 269 TAGTACAAGG TTAATGTATA TTTTTATGCA AGTCCTTGTA CTGGTCTTTT TTTTGAGTCA 1514 .......... .......... .......... .......... .......... .......... 269 AAAGTCCTTG TGTCTATCAG TTTATCTTAA TCATTTTAAT CTTTTCTTTG TGAAAGCCAC 1574 .......... .......... .......... .......... .......... .......... 269 CTGGGAATTA ACTGTTGCAT CTTGCACCTC ATTTATTTAG TGGGAAATCA GCTGAGCACT 1634 .......... .......... .......... .......... .......... .......... 269 TTGTTTCCAA CCCTTAATCT TGACTAGACT TTGTATAGTT GTGGACATGA GATGGCTTTG 1694 .......... .......... .......... .......... .......... .......... 269 AAGCAAAAAG TTGTTTTGCA GTGTGACCAA TTTAACATTT TCACACAAGT TGGTTGTAAA 1754 .......... .......... .......... .......... .......... .......... 269 TTTCACAAAT TCAAATTGCA AATTGCATCT GCAAAATGAT TTCAATTGTT CCTCCTTTTT 1814 .......... .......... .......... .......... .......... .......... 269 GATTTTTCGA GAAGCATTAT ATTGGTTGTA CATTATTTAT GATTGATGTG GTAAGTCTTG 1874 .......... .......... .......... .......... .......... .......... 269 GCCCGACAAC GGCCTTCTTT CCCATATATA GAGTAACAGA TCATGTGTAC TGCGTATGAA 1934 .......... .......... .......... .......... .......... .......... 269 CATTAAGGTT CTGATCCCTC ATTCAGTTTG GATCAATATC GTCCTTCCAA AATTGTAAGT 1994 .......... .......... .......... .......... .......... .......... 269 GAACCTTTTG GAAATTTGTC AAGATTCTAG ATCAACGTGC AATGGCTCAG T 2045 | ||| ||||| | | | | ||| | .......... .......... ...A-TCTCC ATCAAGATCC AGATCCCCAG T 296 hqPGS_C06HBa0024L21.1-8+_SGN-E201707+ (1095 1201,1290 1388) ******************************************************************************** EST sequence 12 +strand 448 n (File: SGN-E274214+) 1 CTTGATGAAT CTGAGTTTCG GAATGCTTTT TCTCGTTCAA CAATTCGGGT GAAGGAACAT 61 GATTCTAGAA GCCGCAGCCG CAGCCGTTCT TACTCGAGAG GAAAGAGTGG TAGCCGTAGC 121 CGCAGTCGAA GTTACAGTCG CAGCCGGAGC AGAAGCAAAT CTCCTAAAGC TAAGTCGTCA 181 AAGCGTACAA GATCTCGTTC TAGATCTGTC TCTTCTCAGC CCCGTTCTGG GTTAAAAGGA 241 CGCTCTTTGT CAAGATCTCC ATCAAGATCC AGATCCCCAG TACCATCTCG CCCAAAACGT 301 GTGAGCAAAA GCCCAAAACC TCGCGACTCC AGGAGAAGCC AGAGCTTGAG TAAAAGCCCA 361 AAACCTCGTG ATTCCAGGAG AAGCGAGAGT CCAAGCAAGA GCCCCAAACT GCGTGATTCC 421 AGGAGAAGCA AGAGCATGAG TAAAAGCC Predicted gene structure (within gDNA segment 24 to 2263): Exon 1 1095 1201 ( 107 n); cDNA 49 155 ( 107 n); score: 1.000 Intron 1 1202 1289 ( 88 n); Pd: 1.000 (s: 1.00), Pa: 0.429 (s: 1.00) Exon 2 1290 1388 ( 99 n); cDNA 156 254 ( 99 n); score: 1.000 Intron 2 1389 2017 ( 629 n); Pd: 0.995 (s: 1.00), Pa: 0.538 (s: 0) Exon 3 2018 2045 ( 28 n); cDNA 255 281 ( 27 n); score: 0.607 MATCH C06HBa0024L21.1-8+ SGN-E274214+ 1.000 234 0.522 C PGS_C06HBa0024L21.1-8+_SGN-E274214+ (1095 1201,1290 1388,2018 2045) Alignment (genomic DNA sequence = upper lines): GTGAAGGAAC ATGATTCTAG AAGCCGCAGC CGCAGCCGTT CTTACTCGAG AGGAAAGAGT 1154 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGAAGGAAC ATGATTCTAG AAGCCGCAGC CGCAGCCGTT CTTACTCGAG AGGAAAGAGT 108 GGTAGCCGTA GCCGCAGTCG AAGTTACAGT CGCAGCCGGA GCAGAAGGTA TGTATTATGT 1214 |||||||||| |||||||||| |||||||||| |||||||||| ||||||| GGTAGCCGTA GCCGCAGTCG AAGTTACAGT CGCAGCCGGA GCAGAAG... .......... 155 AGTTTGCACG TTTTATAGCT TGTTACTTCA CCTTTGAATG CTACTATGTA TCTCATTGCT 1274 .......... .......... .......... .......... .......... .......... 155 GCTCTTTCCT AGCAGCAAAT CTCCTAAAGC TAAGTCGTCA AAGCGTACAA GATCTCGTTC 1334 ||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... .....CAAAT CTCCTAAAGC TAAGTCGTCA AAGCGTACAA GATCTCGTTC 200 TAGATCTGTC TCTTCTCAGC CCCGTTCTGG GTTAAAAGGA CGCTCTTTGT CAAGGTAATC 1394 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||| TAGATCTGTC TCTTCTCAGC CCCGTTCTGG GTTAAAAGGA CGCTCTTTGT CAAG...... 254 TTTCTTACTG GTCATATCTA CCCATTTTGT TGTTGGGGCA GGTTATGTAA AAGTAGCATA 1454 .......... .......... .......... .......... .......... .......... 254 TAGTACAAGG TTAATGTATA TTTTTATGCA AGTCCTTGTA CTGGTCTTTT TTTTGAGTCA 1514 .......... .......... .......... .......... .......... .......... 254 AAAGTCCTTG TGTCTATCAG TTTATCTTAA TCATTTTAAT CTTTTCTTTG TGAAAGCCAC 1574 .......... .......... .......... .......... .......... .......... 254 CTGGGAATTA ACTGTTGCAT CTTGCACCTC ATTTATTTAG TGGGAAATCA GCTGAGCACT 1634 .......... .......... .......... .......... .......... .......... 254 TTGTTTCCAA CCCTTAATCT TGACTAGACT TTGTATAGTT GTGGACATGA GATGGCTTTG 1694 .......... .......... .......... .......... .......... .......... 254 AAGCAAAAAG TTGTTTTGCA GTGTGACCAA TTTAACATTT TCACACAAGT TGGTTGTAAA 1754 .......... .......... .......... .......... .......... .......... 254 TTTCACAAAT TCAAATTGCA AATTGCATCT GCAAAATGAT TTCAATTGTT CCTCCTTTTT 1814 .......... .......... .......... .......... .......... .......... 254 GATTTTTCGA GAAGCATTAT ATTGGTTGTA CATTATTTAT GATTGATGTG GTAAGTCTTG 1874 .......... .......... .......... .......... .......... .......... 254 GCCCGACAAC GGCCTTCTTT CCCATATATA GAGTAACAGA TCATGTGTAC TGCGTATGAA 1934 .......... .......... .......... .......... .......... .......... 254 CATTAAGGTT CTGATCCCTC ATTCAGTTTG GATCAATATC GTCCTTCCAA AATTGTAAGT 1994 .......... .......... .......... .......... .......... .......... 254 GAACCTTTTG GAAATTTGTC AAGATTCTAG ATCAACGTGC AATGGCTCAG T 2045 | ||| ||||| | | | | ||| | .......... .......... ...A-TCTCC ATCAAGATCC AGATCCCCAG T 281 hqPGS_C06HBa0024L21.1-8+_SGN-E274214+ (1095 1201,1290 1388) ******************************************************************************** EST sequence 10 +strand 772 n (File: SGN-E320480+) 1 TGTTCTACAA GTATGGCCCG ATAGCACATA TTGATCTGAA AATTCCACCA AGACCCCCAG 61 GTTATGCTTT TGTTGAGTTT GAAGAGGCAC GCGATGCTGA GGATGCTATT CGTGGGCGCG 121 ATGGCTATGA ATTTGATGGG CATCGTTTGA GGGTTGAGCT TGCACATGGT GGGCGTGGTA 181 ACTCATCGTC AGATCGTTAT AATAGTGGCA ATAATAGTGG CCATAATGGT GGTCGTAATA 241 ATCACAAATT TGGAGCGCCC AAACGTACCG AGTATCGAGT TTTAGTTACC GGATTGCCCC 301 ATTCAGCATC CTGGCAGGAT CTCAAGGATC ATATGCGTCG AGCTGGGGAT GTTTGTTTCT 361 CACAAGTTTT CCGTGAGGGG AGTGGGACCA CTGGGATTGT GGATTATACC AACTATGACG 421 ACATGAAATA TGCTATAAAA AAACTTGATG AATCTGAGTT TCGGAATGCT TTTTCTCGTT 481 CAACAATTCG GGTGAAGGAA CATGATTCTA GAAGCCGCAG CCGCAGCCGT TCTTACTCGA 541 GAGGAAAGAG TGGTAGCCGT AGCCGCAGTC GAAGTTACAG TCGCAGCCGG AGCAGAAGCA 601 AATCTCCTAA AGCTAAGTCG TCAAAGCGTA CAAGATCTCG TTCTAGATCT GTCTCTTCTC 661 AGCCCCGTTC TGGGTTAAAA GGACGCTCTT TGTNCAGATC TCCATCAAGA TCCAGATCCC 721 CAGTACCATC TCGCCCAAGA CGTGTGAGCA AAAGCCCCAA ACCACGCAAT TC Predicted gene structure (within gDNA segment 1 to 2263): Exon 1 1095 1201 ( 107 n); cDNA 492 598 ( 107 n); score: 1.000 Intron 1 1202 1289 ( 88 n); Pd: 1.000 (s: 1.00), Pa: 0.429 (s: 1.00) Exon 2 1290 1388 ( 99 n); cDNA 599 697 ( 99 n); score: 0.980 MATCH C06HBa0024L21.1-8+ SGN-E320480+ 0.990 206 0.267 C PGS_C06HBa0024L21.1-8+_SGN-E320480+ (1095 1201,1290 1388) Alignment (genomic DNA sequence = upper lines): GTGAAGGAAC ATGATTCTAG AAGCCGCAGC CGCAGCCGTT CTTACTCGAG AGGAAAGAGT 1154 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGAAGGAAC ATGATTCTAG AAGCCGCAGC CGCAGCCGTT CTTACTCGAG AGGAAAGAGT 551 GGTAGCCGTA GCCGCAGTCG AAGTTACAGT CGCAGCCGGA GCAGAAGGTA TGTATTATGT 1214 |||||||||| |||||||||| |||||||||| |||||||||| ||||||| GGTAGCCGTA GCCGCAGTCG AAGTTACAGT CGCAGCCGGA GCAGAAG... .......... 598 AGTTTGCACG TTTTATAGCT TGTTACTTCA CCTTTGAATG CTACTATGTA TCTCATTGCT 1274 .......... .......... .......... .......... .......... .......... 598 GCTCTTTCCT AGCAGCAAAT CTCCTAAAGC TAAGTCGTCA AAGCGTACAA GATCTCGTTC 1334 ||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... .....CAAAT CTCCTAAAGC TAAGTCGTCA AAGCGTACAA GATCTCGTTC 643 TAGATCTGTC TCTTCTCAGC CCCGTTCTGG GTTAAAAGGA CGCTCTTTGT CAAG 1388 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| || TAGATCTGTC TCTTCTCAGC CCCGTTCTGG GTTAAAAGGA CGCTCTTTGT NCAG 697 hqPGS_C06HBa0024L21.1-8+_SGN-E320480+ (1095 1201,1290 1388) ******************************************************************************** EST sequence 17 -strand 808 n (File: SGN-E554369-) 1 GGAAAGAGTG GTAGCCGTAG CCGCAGTCGA AGTTACAGTC GCAGCCGGAG CAGAAGCAAA 61 TCTCCTAAAG CTAAGTCGTC AAAGCGTACA AGATCTCGTT CTAGATCTGT CTCTTCTCAG 121 CCCCGTTCTG GGTTAAAAGG ACGCTCTTTG TCAAGATCTC CATCAAGATC CAGATCCCCA 181 GTACCATCTC GCCCAAAACG TGTGAGCAAA AGCCCAAAAC CTCGCGACTC CAGGAGAAGC 241 CAGAGCTTGA GTAAAAGCCC AAAACCTCGT GATTCCAGGA GAAGCGAGAG TCCAAGCAAG 301 AGCCCCAAAC TGCGTGATTC CAGGAGAAGC AAGAGCATGA GTAAAAGCCC CGAACCACGC 361 AATTCCAGGA GGAGCCCCAG CAGGAGCAAA AGCCCCAAAC CACGCAATTC CAGGAGAAGC 421 CCTAGCAGGA GCCGCAGCCG GAGTCGCAGT GGGAGTTTGT CGAGGTGAGA GCTATATTGT 481 GGATTAAGCT GTTGCTGCAG GTGCGGAGAT AGAGAGTGTG CTGCTGTGCC TGAATAGAGC 541 AGCTGAGCTG TTGGTGTCAT CTTTTCCGAT AACTAGTCCT GATGAATGGC TTCTGAATTT 601 TTTGGTCCAT GACCAAAATA GAACTCAACT GTGAACCTTT GACTTGGGGA AGACTGCAGT 661 ATTCTAGTAT TTTAAGCAAC TTTGCAGCAT GTATGATGGC AAAAATTGAA AATTATGTCT 721 TGGATATTTG CAGATTTTGT TATTTGTTTC CTGCAGGTGA AATGCTACTT ATGTAATGAC 781 ATTGTCTGCA CTCTTGTGAC TTTGTAAC Predicted gene structure (within gDNA segment 536 to 2263): Exon 1 1146 1201 ( 56 n); cDNA 1 56 ( 56 n); score: 1.000 Intron 1 1202 1289 ( 88 n); Pd: 1.000 (s: 1.00), Pa: 0.429 (s: 1.00) Exon 2 1290 1388 ( 99 n); cDNA 57 155 ( 99 n); score: 1.000 Intron 2 1389 2017 ( 629 n); Pd: 0.995 (s: 1.00), Pa: 0.538 (s: 0) Exon 3 2018 2045 ( 28 n); cDNA 156 182 ( 27 n); score: 0.607 MATCH C06HBa0024L21.1-8+ SGN-E554369- 1.000 183 0.226 C PGS_C06HBa0024L21.1-8+_SGN-E554369- (1146 1201,1290 1388,2018 2045) Alignment (genomic DNA sequence = upper lines): GGAAAGAGTG GTAGCCGTAG CCGCAGTCGA AGTTACAGTC GCAGCCGGAG CAGAAGGTAT 1205 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||| GGAAAGAGTG GTAGCCGTAG CCGCAGTCGA AGTTACAGTC GCAGCCGGAG CAGAAG.... 56 GTATTATGTA GTTTGCACGT TTTATAGCTT GTTACTTCAC CTTTGAATGC TACTATGTAT 1265 .......... .......... .......... .......... .......... .......... 56 CTCATTGCTG CTCTTTCCTA GCAGCAAATC TCCTAAAGCT AAGTCGTCAA AGCGTACAAG 1325 |||||| |||||||||| |||||||||| |||||||||| .......... .......... ....CAAATC TCCTAAAGCT AAGTCGTCAA AGCGTACAAG 92 ATCTCGTTCT AGATCTGTCT CTTCTCAGCC CCGTTCTGGG TTAAAAGGAC GCTCTTTGTC 1385 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCTCGTTCT AGATCTGTCT CTTCTCAGCC CCGTTCTGGG TTAAAAGGAC GCTCTTTGTC 152 AAGGTAATCT TTCTTACTGG TCATATCTAC CCATTTTGTT GTTGGGGCAG GTTATGTAAA 1445 ||| AAG....... .......... .......... .......... .......... .......... 155 AGTAGCATAT AGTACAAGGT TAATGTATAT TTTTATGCAA GTCCTTGTAC TGGTCTTTTT 1505 .......... .......... .......... .......... .......... .......... 155 TTTGAGTCAA AAGTCCTTGT GTCTATCAGT TTATCTTAAT CATTTTAATC TTTTCTTTGT 1565 .......... .......... .......... .......... .......... .......... 155 GAAAGCCACC TGGGAATTAA CTGTTGCATC TTGCACCTCA TTTATTTAGT GGGAAATCAG 1625 .......... .......... .......... .......... .......... .......... 155 CTGAGCACTT TGTTTCCAAC CCTTAATCTT GACTAGACTT TGTATAGTTG TGGACATGAG 1685 .......... .......... .......... .......... .......... .......... 155 ATGGCTTTGA AGCAAAAAGT TGTTTTGCAG TGTGACCAAT TTAACATTTT CACACAAGTT 1745 .......... .......... .......... .......... .......... .......... 155 GGTTGTAAAT TTCACAAATT CAAATTGCAA ATTGCATCTG CAAAATGATT TCAATTGTTC 1805 .......... .......... .......... .......... .......... .......... 155 CTCCTTTTTG ATTTTTCGAG AAGCATTATA TTGGTTGTAC ATTATTTATG ATTGATGTGG 1865 .......... .......... .......... .......... .......... .......... 155 TAAGTCTTGG CCCGACAACG GCCTTCTTTC CCATATATAG AGTAACAGAT CATGTGTACT 1925 .......... .......... .......... .......... .......... .......... 155 GCGTATGAAC ATTAAGGTTC TGATCCCTCA TTCAGTTTGG ATCAATATCG TCCTTCCAAA 1985 .......... .......... .......... .......... .......... .......... 155 ATTGTAAGTG AACCTTTTGG AAATTTGTCA AGATTCTAGA TCAACGTGCA ATGGCTCAGT 2045 | ||| | |||| | || | |||| .......... .......... .......... ..A-TCTCCA TCAAGATCCA GATCCCCAGT 182 hqPGS_C06HBa0024L21.1-8+_SGN-E554369- (1146 1201,1290 1388) ******************************************************************************** EST sequence 1 +strand 688 n (File: SGN-E316156+) 1 CCTTCTCTAA GCGCTCTGTG TTTTCATCCT TCATCAATCT TCTAGTAAAG GAACAATGAG 61 TCGTTCAAGT AGGACGATTT ATGTTGGTAA TCTTCCTGGT GATATTCGTG AGCGAGAAGT 121 GGAGGATCTG TTCTACAAGT ATGGCCCGAT AGCACATATT GATCTGAAAA TTCCACCAAG 181 ACCCCCAGGT TATGCTTTTG TTGAGTTTGA AGAGGCACGC GATGCTGAGG ATGCTATTCG 241 TGGGCGCGAT GGCTATGAAT TTGATGGGCA TCGTTTGAGG GTTGAGCTTG CACATGGTGG 301 GCGTGGTAAC TCATCGTCAG ATCGTTATAA TAGTGGCAAT AATAGTGGCC ATAATGGTGG 361 TCGTAATAAT CACAAATTTG GAGCGCCCAA ACGTACCGAG TATCGAGTTT TAGTTACCGG 421 ATTGCCCCAT TCAGCATCCT GGCAGGATCT CAAGGATCAT ATGCGTCGAG CTGGGGATGT 481 TTGTTTCTCA CAAGTTTTCC GTGAGGGGAG TGGGACCACT GGGATTGTGG ATTATACCAA 541 CTATGACGAC ATGAAATATG CTATAAAAAA ACTTGATGAA TCTGAGTTTC GGAATGCTTT 601 TTCTCGTTCA ACAATTCGGG TGAAGGAACA TGATTCTAGA AGCCGCAGCC GCAGCCGTTC 661 TTACTCGAGA GGAAAGAGTG GTAGCCGT Predicted gene structure (within gDNA segment 1 to 1773): Exon 1 1095 1163 ( 69 n); cDNA 620 688 ( 69 n); score: 1.000 MATCH C06HBa0024L21.1-8+ SGN-E316156+ 1.000 69 0.100 C PGS_C06HBa0024L21.1-8+_SGN-E316156+ (1095 1163) Alignment (genomic DNA sequence = upper lines): GTGAAGGAAC ATGATTCTAG AAGCCGCAGC CGCAGCCGTT CTTACTCGAG AGGAAAGAGT 1154 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGAAGGAAC ATGATTCTAG AAGCCGCAGC CGCAGCCGTT CTTACTCGAG AGGAAAGAGT 679 GGTAGCCGT 1163 ||||||||| GGTAGCCGT 688 hqPGS_C06HBa0024L21.1-8+_SGN-E316156+ (1095 1163) ******************************************************************************** EST sequence 6 +strand 545 n (File: SGN-E270899+) 1 AACATTAAAG TTCTGATCCC TCATTCAGTT TGGATCAATA TCGTCCTTCC AAAATTGTAA 61 GTGAACCTTT TGGAAATTTG TCAAGATTCT AGATCAACGT GCAATGGCTC AGTGGGTAAC 121 TAAGCTGTCA TTAGCTAATA TGGTGCTCGT ATTGTAGTTT TAATAGGCTT TATATTATGG 181 TGAGGTACAA TTCTGCATCT TTTTTGGTGG CATAGAGATA GCCAATGTTA ATTTCATTCT 241 GCTTCAAGGT GTCTCCGTCC AAAAAAACCC AGTCTGCTTC AAGGTGATAG ATCTTTTTGA 301 ACCTAAGCAA TGTCAAACCA TTTGATAAAC CAGACAAGCT AGGGAACATC ACAAGTGCAG 361 AGTCCTGTAC ATCAGGATTG TTCTTCTTCT TCTAATTATG CTGTGTCTAA CTGTAATTGC 421 GGCTATCAAA TATGTGGTCA ACTGGTCATT CAGTTATGAA AAGATGTCTA GATACTGCAT 481 TTCAGAATCC ATTAGGAACA AAATAGTTGT TGGGTGTTGG ATGTAGAAGT TGGTTCTTCC 541 TATGC Predicted gene structure (within gDNA segment 1252 to 2263): Exon 1 1933 2263 ( 331 n); cDNA 1 331 ( 331 n); score: 0.991 MATCH C06HBa0024L21.1-8+ SGN-E270899+ 0.991 331 0.607 C PGS_C06HBa0024L21.1-8+_SGN-E270899+ (1933 2263) Alignment (genomic DNA sequence = upper lines): AACATTAAGG TTCTGATCCC TCATTCAGTT TGGATCAATA TCGTCCTTCC AAAATTGTAA 1992 |||||||| | |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACATTAAAG TTCTGATCCC TCATTCAGTT TGGATCAATA TCGTCCTTCC AAAATTGTAA 60 GTGAACCTTT TGGAAATTTG TCAAGATTCT AGATCAACGT GCAATGGCTC AGTGGGTAAC 2052 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGAACCTTT TGGAAATTTG TCAAGATTCT AGATCAACGT GCAATGGCTC AGTGGGTAAC 120 TAAGCTGTCA TTAGCTAATA TGGTGCTCGT ATTGTAGTTT TAATAGGCTT TATATTATGG 2112 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAAGCTGTCA TTAGCTAATA TGGTGCTCGT ATTGTAGTTT TAATAGGCTT TATATTATGG 180 TGAGGTACAA TTCTGCATCT TTTTTGGTGG CATAGAGATA GCCAATGTTA ATTTCATTCT 2172 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAGGTACAA TTCTGCATCT TTTTTGGTGG CATAGAGATA GCCAATGTTA ATTTCATTCT 240 GCTTCAGGGT GTCTCCGTCC AAAAAAACCC AGTCTGCTTC AGGGTGATAG ATCTTTTTGA 2232 |||||| ||| |||||||||| |||||||||| |||||||||| | |||||||| |||||||||| GCTTCAAGGT GTCTCCGTCC AAAAAAACCC AGTCTGCTTC AAGGTGATAG ATCTTTTTGA 300 ACCTAAGCAA TGTCAAACCA TTTGATAAAC C 2263 |||||||||| |||||||||| |||||||||| | ACCTAAGCAA TGTCAAACCA TTTGATAAAC C 331 hqPGS_C06HBa0024L21.1-8+_SGN-E270899+ (1933 2263) Total number of EST alignments reported: 17 ________________________________________________________________________________ Predicted gene locations (1) in segment 1 to 2263: PGL 1 (+ strand): 193 2263 AGS-1 (193 398,752 800) SCR (e 1.000 d 0.991 a 0.999,e 1.000) Exon 1 193 398 ( 206 n); score: 1.000 Intron 1 399 751 ( 353 n); Pd: 0.991 Pa: 0.999 Exon 2 752 800 ( 49 n); score: 1.000 PGS (193 398,752 800) SGN-E336726+ PGS (195 398,752 800) SGN-E304236+ PGS (197 398,752 800) SGN-E309123+ PGS (197 398,752 800) SGN-E290753+ PGS (200 398,752 800) SGN-E312205+ PGS (200 398,752 800) SGN-E318444+ PGS (213 398,752 800) SGN-E283551+ PGS (243 398,752 800) SGN-E252214+ PGS (336 398,752 800) SGN-E278586+ 3-phase translation of AGS-1 (+strand): . . . . . . 193 TCACATCTCACACACAAATTTCATTTTCTACTTTCACTTTCTCTCTCTAGAAAACAAAAA S H L T H K F H F L L S L S L S R K Q K H I S H T N F I F Y F H F L S L E N K N T S H T Q I S F S T F T F S L - K T K . . . . . . 253 TGGCGATCAAGGTTCATGGCCCTATGATGTCCCCTGCTGTTATGAGAGTCGTAGCTACAC W R S R F M A L - C P L L L - E S - L H G D Q G S W P Y D V P C C Y E S R S Y T M A I K V H G P M M S P A V M R V V A T . . . . . . 313 TCAAAGAGAAAGATCTTGATTTTGAACTTGTTCCTGTTAATATGCAAGCTGGTGATCACA S K R K I L I L N L F L L I C K L V I T Q R E R S - F - T C S C - Y A S W - S Q L K E K D L D F E L V P V N M Q A G D H . . . : . . . 373 AAAAGGAACCATTCATTTCTCTAAAT : CCGTTTGGTCAAGTTCCAGCTTTTGAAGATGGAG K R N H S F L - I : R L V K F Q L L K M E K G T I H F S K : S V W S S S S F - R W R K K E P F I S L N : P F G Q V P A F E D G . . 786 ATTTAAAGCTTTTTG I - S F L F K A F D L K L F Maximal non-overlapping open reading frames (>= 64 codons): >C06HBa0024L21.1-8+_PGL-1_AGS-1_PPS_1 (243 398,752 799) (frame '0'; 204 bp, 68 residues) 1 KTKMAIKVHG PMMSPAVMRV VATLKEKDLD FELVPVNMQA GDHKKEPFIS LNPFGQVPAF 61 EDGDLKLF AGS-2 (1095 1201,1290 1783) SCR (e 1.000 d 1.000 a 0.429,e 0.993) Exon 1 1095 1201 ( 107 n); score: 1.000 Intron 1 1202 1289 ( 88 n); Pd: 1.000 Pa: 0.429 Exon 2 1290 1783 ( 494 n); score: 0.993 PGS (1095 1201,1290 1783) SGN-E542931+ PGS (1095 1201,1290 1683) SGN-E303030+ PGS (1095 1201,1290 1388) SGN-E201707+ PGS (1095 1201,1290 1388) SGN-E274214+ PGS (1095 1201,1290 1388) SGN-E320480+ PGS (1095 1163) SGN-E316156+ PGS (1146 1201,1290 1388) SGN-E554369- 3-phase translation of AGS-2 (+strand): . . . . . . 1095 GTGAAGGAACATGATTCTAGAAGCCGCAGCCGCAGCCGTTCTTACTCGAGAGGAAAGAGT V K E H D S R S R S R S R S Y S R G K S - R N M I L E A A A A A V L T R E E R V E G T - F - K P Q P Q P F L L E R K E . . . . . : . 1155 GGTAGCCGTAGCCGCAGTCGAAGTTACAGTCGCAGCCGGAGCAGAAG : CAAATCTCCTAAA G S R S R S R S Y S R S R S R S : K S P K V A V A A V E V T V A A G A E : A N L L K W - P - P Q S K L Q S Q P E Q K : Q I S - . . . . . . 1303 GCTAAGTCGTCAAAGCGTACAAGATCTCGTTCTAGATCTGTCTCTTCTCAGCCCCGTTCT A K S S K R T R S R S R S V S S Q P R S L S R Q S V Q D L V L D L S L L S P V L S - V V K A Y K I S F - I C L F S A P F . . . . . . 1363 GGGTTAAAAGGACGCTCTTTGTCAAGGTAATCTTTCTTACTGGTCATATCTACCCATTTT G L K G R S L S R - S F L L V I S T H F G - K D A L C Q G N L S Y W S Y L P I L W V K R T L F V K V I F L T G H I Y P F . . . . . . 1423 GTTGTTGGGGCAGGTTATGTAAAAGTAGCATATAGTACAAGGTTAATGTATATTTTTATG V V G A G Y V K V A Y S T R L M Y I F M L L G Q V M - K - H I V Q G - C I F L C C C W G R L C K S S I - Y K V N V Y F Y . . . . . . 1483 CAAGTCCTTGTACTGGTCTTTTTTTTGAGTCAAAAGTCCTTGTGTCTATCAGTTTATCTT Q V L V L V F F L S Q K S L C L S V Y L K S L Y W S F F - V K S P C V Y Q F I L A S P C T G L F F E S K V L V S I S L S . . . . . . 1543 AATCATTTTAATCTTTTCTTTGTGAAAGCCACCTGGGAATTAACTGTTGCATCTTGCACC N H F N L F F V K A T W E L T V A S C T I I L I F S L - K P P G N - L L H L A P - S F - S F L C E S H L G I N C C I L H . . . . . . 1603 TCATTTATTTAGTGGGAAATCAGCTGAGCACTTTGTTTCCAACCCTTAATCTTGACTAGA S F I - W E I S - A L C F Q P L I L T R H L F S G K S A E H F V S N P - S - L D L I Y L V G N Q L S T L F P T L N L D - . . . . . . 1663 CTTTGTATAGTTGTGGACATGAGATGGCTTTGAAGCAAAAAGTTGTTTTGCAGTGTGACC L C I V V D M R W L - S K K L F C S V T F V - L W T - D G F E A K S C F A V - P T L Y S C G H E M A L K Q K V V L Q C D . . . . . . 1723 AATTTAACATTTTCACACAAGTTGGTTGTAAATTTCACAAATTCAAATTGCAAATTGCAT N L T F S H K L V V N F T N S N C K L H I - H F H T S W L - I S Q I Q I A N C I Q F N I F T Q V G C K F H K F K L Q I A . 1783 C Maximal non-overlapping open reading frames (>= 64 codons): >C06HBa0024L21.1-8+_PGL-1_AGS-2_PPS_1 (1393 1614) (frame '1'; 219 bp, 73 residues) 1 SFLLVISTHF VVGAGYVKVA YSTRLMYIFM QVLVLVFFLS QKSLCLSVYL NHFNLFFVKA 61 TWELTVASCT SFI- >C06HBa0024L21.1-8+_PGL-1_AGS-2_PPS_2 (1095 1201,1290 1392) (frame '1'; 207 bp, 69 residues) 1 VKEHDSRSRS RSRSYSRGKS GSRSRSRSYS RSRSRSKSPK AKSSKRTRSR SRSVSSQPRS 61 GLKGRSLSR- AGS-3 (1933 2263) SCR (e 0.991) Exon 1 1933 2263 ( 331 n); score: 0.991 PGS (1933 2263) SGN-E270899+ 3-phase translation of AGS-3 (+strand): . . . . . . 1933 AACATTAAGGTTCTGATCCCTCATTCAGTTTGGATCAATATCGTCCTTCCAAAATTGTAA N I K V L I P H S V W I N I V L P K L - T L R F - S L I Q F G S I S S F Q N C K H - G S D P S F S L D Q Y R P S K I V . . . . . . 1993 GTGAACCTTTTGGAAATTTGTCAAGATTCTAGATCAACGTGCAATGGCTCAGTGGGTAAC V N L L E I C Q D S R S T C N G S V G N - T F W K F V K I L D Q R A M A Q W V T S E P F G N L S R F - I N V Q W L S G - . . . . . . 2053 TAAGCTGTCATTAGCTAATATGGTGCTCGTATTGTAGTTTTAATAGGCTTTATATTATGG - A V I S - Y G A R I V V L I G F I L W K L S L A N M V L V L - F - - A L Y Y G L S C H - L I W C S Y C S F N R L Y I M . . . . . . 2113 TGAGGTACAATTCTGCATCTTTTTTGGTGGCATAGAGATAGCCAATGTTAATTTCATTCT - G T I L H L F W W H R D S Q C - F H S E V Q F C I F F G G I E I A N V N F I L V R Y N S A S F L V A - R - P M L I S F . . . . . . 2173 GCTTCAGGGTGTCTCCGTCCAAAAAAACCCAGTCTGCTTCAGGGTGATAGATCTTTTTGA A S G C L R P K K P S L L Q G D R S F - L Q G V S V Q K N P V C F R V I D L F E C F R V S P S K K T Q S A S G - - I F L . . . . 2233 ACCTAAGCAATGTCAAACCATTTGATAAACC T - A M S N H L I N P K Q C Q T I - - T N L S N V K P F D K Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-3 (-strand): . . . . . . 2263 GGTTTATCAAATGGTTTGACATTGCTTAGGTTCAAAAAGATCTATCACCCTGAAGCAGAC G L S N G L T L L R F K K I Y H P E A D V Y Q M V - H C L G S K R S I T L K Q T F I K W F D I A - V Q K D L S P - S R . . . . . . 2203 TGGGTTTTTTTGGACGGAGACACCCTGAAGCAGAATGAAATTAACATTGGCTATCTCTAT W V F L D G D T L K Q N E I N I G Y L Y G F F W T E T P - S R M K L T L A I S M L G F F G R R H P E A E - N - H W L S L . . . . . . 2143 GCCACCAAAAAAGATGCAGAATTGTACCTCACCATAATATAAAGCCTATTAAAACTACAA A T K K D A E L Y L T I I - S L L K L Q P P K K M Q N C T S P - Y K A Y - N Y N C H Q K R C R I V P H H N I K P I K T T . . . . . . 2083 TACGAGCACCATATTAGCTAATGACAGCTTAGTTACCCACTGAGCCATTGCACGTTGATC Y E H H I S - - Q L S Y P L S H C T L I T S T I L A N D S L V T H - A I A R - S I R A P Y - L M T A - L P T E P L H V D . . . . . . 2023 TAGAATCTTGACAAATTTCCAAAAGGTTCACTTACAATTTTGGAAGGACGATATTGATCC - N L D K F P K G S L T I L E G R Y - S R I L T N F Q K V H L Q F W K D D I D P L E S - Q I S K R F T Y N F G R T I L I . . . . 1963 AAACTGAATGAGGGATCAGAACCTTAATGTT K L N E G S E P - C N - M R D Q N L N V Q T E - G I R T L M Maximal non-overlapping open reading frames (>= 64 codons): none ... finished at: Mon Jul 24 23:21:41 2006