GeneSeqer. Version of March 12, 2006. Date run: Mon Jul 24 23:21:09 2006 (Bayesian) Splice site model (species): Arabidopsis thaliana Fast search parameters: MinMatchLen 16, MinQualityHSP 30, MinQualityCHAIN 50. Total number of ESTs: 34829 Total sequence length: 35392868 Minimum sequence length: 63 Maximum sequence length: 5381 Length distribution (number of sequences of specified length): < 100: 4 < 200: 53 < 300: 143 < 400: 353 < 500: 791 < 600: 1674 < 700: 2583 < 800: 4023 < 900: 6481 < 1000: 5706 >=1000: 13018 Input file : /tmp/bac-submission-temp-KqzEV/C06HBa0046G10/C06HBa0046G10.seq.screen ________________________________________________________________________________ Sequence 1: C06HBa0046G10.1-1, from 1 to 22710, both strands analyzed. ... started at: Mon Jul 24 23:33:35 2006 EST library file: /tmp/cxgn-bacpublish-resources-3cdDhp/lycopersicum_combined_unigene_seqs; matching gDNA +strand ... ... found all matches, elapsed seconds = 2 ... matches indexed, elapsed seconds = 2 HitsTableSize = 1 EST library file: /tmp/cxgn-bacpublish-resources-3cdDhp/lycopersicum_combined_unigene_seqs; matching gDNA -strand ... ... found all matches, elapsed seconds = 1 ... matches indexed, elapsed seconds = 1 HitsTableSize = 6 ******************************************************************************** EST sequence 5 +strand 998 n (File: SGN-U322023+) 1 TATTATCCTA CTATTTCATC CGTATTAATA AATATTTGTG CTCTTTCAAT TCAATTTTCT 61 AAATATAAAA AAATAGATCA CTTTAGAGTT GCAATTGAAG GTATGATTGA AAAATTTAAA 121 AAATATTTTT TTCCTATTCC TCAAGTTTTT TTAACGGCTA CTTTACTTCA TCCTGCTTAT 181 AAATTACAAG GTGTGAAAGG CCTTGTCGAC ACTTTTTATG AAACTTTAGA AGTTTTACCG 241 GAAGAAACTC CAGATTGTGA AACGTGTAAG TATAGCATAA AAATAGAAGC AAAAATTTTG 301 TATGAAAAAT ATAGAACTAG TGAAAATTTT GAAGGAGAAG TTGCTCAAAC TTCTAATGTT 361 GAGATTGATT TGTCAGTTCC AATTTCATGT TATATGCGAG GTATTCTTGG TCTTAATTCT 421 ACTAACCGTG ATGATTTTGA AGAATATCTT AATCAATCTT TAGAAAACTT GGAAATCAAA 481 GATGGCAATG AAGATTTATT AGGATGGTGG AGTAGGCGAA CCGATGCATT TCCAACTTTG 541 AGCAAAATGG TTCGTGATGT TCTATCTATT CAAGCTTCAT CAGTTGCATC AGAGGCTGCT 601 CTCAGTGCGG CAAGATTTCA AATTAGTTAT CATAGACATT CATTGGCGGA AGACAGTTTG 661 GAAACAACAG TTTTATTTAG AGACTGGTCC AATGTCGGAA GGAGGAATAA CAATTTGCCA 721 AAGTTAAGTA AAAAACAAGC AAGTTGGATC AAAACACTAA TTGAATGCAG TGATTATGAA 781 TTAGAGACAC AAGAATTTCT AGCAAGTTTG CTAACACCGG AGGATATCAC CATCGATATG 841 ATGCGACAAT TAGATAAATT TTAAAGGAGA AAACAAATAT TTTTAGATTA CATTCGAGAA 901 CTAATTGAAA CAGAACCCTT CTAGAAGGTG GCTGCGTANN ATTTAGTACT CATCTAATAT 961 CTGTAACAAT ATTAGTTTTA CGTATAAAAC TTATTGAA Predicted gene structure (within gDNA segment 14840 to 12048): Exon 1 14240 13593 ( 648 n); cDNA 1 647 ( 647 n); score: 0.894 Intron 1 13592 13520 ( 73 n); Pd: 0.000 (s: 0.84), Pa: 0.972 (s: 0) Exon 2 13519 13492 ( 28 n); cDNA 648 673 ( 26 n); score: 0.643 MATCH C06HBa0046G10.1-1- SGN-U322023+ 0.894 676 0.677 C PGS_C06HBa0046G10.1-1-_SGN-U322023+ (14240 13593,13519 13492) Alignment (genomic DNA sequence = upper lines): TATTATCCTA CTATTTTATC AGTATTAATA AATATTTGTG CTCTTACAAT TCAATTTTCT 14181 |||||||||| |||||| ||| ||||||||| |||||||||| ||||| |||| |||||||||| TATTATCCTA CTATTTCATC CGTATTAATA AATATTTGTG CTCTTTCAAT TCAATTTTCT 60 AAATATAAAA AAATAGATAA ATTTAAAGTT GCAATTGAAG GTATGATTGA AAAATTAAAA 14121 |||||||||| |||||||| | |||| |||| |||||||||| |||||||||| |||||| ||| AAATATAAAA AAATAGATCA CTTTAGAGTT GCAATTGAAG GTATGATTGA AAAATTTAAA 120 AAATATTTTT TTCTTATTCC TCAAATTTAT TTAACTGCTA CTTTACTTTC ATCCTGATTA 14061 |||||||||| ||| |||||| |||| ||| | ||||| |||| |||||| ||| |||||| ||| AAATATTTTT TTCCTATTCC TCAAGTTTTT TTAACGGCTA CTTTAC-TTC ATCCTGCTTA 179 TAAATTACGA GGTGTGCAGG GCCTTATTGA CACTTTTTGT GAAACTTAAG AAATTTTACC 14001 |||||||| | |||||| | | ||||| | || |||||||| | ||||||| || || ||||||| TAAATTACAA GGTGTGAAAG GCCTTGTCGA CACTTTTTAT GAAACTTTAG AAGTTTTACC 239 TAAAGAAATT CCAAATTGTG AAACGTGTAA GTCTAGCATA AAAGTAGAAG CAAAAATTTT 13941 |||||| | ||| |||||| |||||||||| || ||||||| ||| |||||| |||||||||| GGAAGAAACT CCAGATTGTG AAACGTGTAA GTATAGCATA AAAATAGAAG CAAAAATTTT 299 GTATAAAAAA TATAGAACTA GTGAAAATAT TGAAGGAGAA GTTGGTCAAA CTTCTAATCA 13881 |||| ||||| |||||||||| |||||||| | |||||||||| |||| ||||| |||||||| GTATGAAAAA TATAGAACTA GTGAAAATTT TGAAGGAGAA GTTGCTCAAA CTTCTAATGT 359 AGATATTGAT TTTGAAGTTC GAATTTCAAC TTATATGAGA GGTTTTCTTT GTCTTAATTC 13821 || |||||| || ||||| ||||||| ||||||| || ||| ||||| |||||||||| TGAGATTGAT TTGTCAGTTC CAATTTCATG TTATATGCGA GGTATTCTTG GTCTTAATTC 419 TACTAACCGT GATGATTTAG AAGAATATAT TAATCAATCT TTAGAAGTAT TTGAAATCAA 13761 |||||||||| |||||||| | |||||||| | |||||||||| |||||| | | |||||||| TACTAACCGT GATGATTTTG AAGAATATCT TAATCAATCT TTAGAAAACT TGGAAATCAA 479 AGATGGCAAT GAAGATTTAT TAGGAT-GTG TAGTAGGCGA ACCGTTGCAT TTCCAACTTT 13702 |||||||||| |||||||||| |||||| ||| ||||||||| |||| ||||| |||||||||| AGATGGCAAT GAAGATTTAT TAGGATGGTG GAGTAGGCGA ACCGATGCAT TTCCAACTTT 539 GAGCAAAATG ATTTGTGATG TTCTAGTTAT TCAAGCTTCA TCAGTTGCAT TGGATGCTGC 13642 |||||||||| || |||||| ||||| ||| |||||||||| |||||||||| || ||||| GAGCAAAATG GTTCGTGATG TTCTATCTAT TCAAGCTTCA TCAGTTGCAT CAGAGGCTGC 599 TTTCAGTGCG GCAAGGTTTC AAATTGGTGA TCATCGTCAT TCAATTTGCA TTTTGATCAT 13582 | |||||||| ||||| |||| ||||| || | |||| | ||| || ||| || TCTCAGTGCG GCAAGATTTC AAATTAGTTA TCATAGACAT TC-ATTGGC. .......... 647 AAACAACAAT TTTCGAATTG GTAAATACAA GCAAGTTGGA TCAAAATGCA AATTGAATGC 13522 .......... .......... .......... .......... .......... .......... 647 AGTGATGATA AATTAGAGTC ACAAGAGTTT 13492 || || | || | | |||| ||||| ..GGAAGA-C AGTTTG-GAA ACAACAGTTT 673 hqPGS_C06HBa0046G10.1-1-_SGN-U322023+ (14240 13593,13519 13492) ******************************************************************************** EST sequence 6 +strand 352 n (File: SGN-U322024+) 1 TGCAGTGATG ATGAATTAGA GGCACAAGAA TTTCTAACAA GTTTGCCAAC ACCGGAGGAC 61 ATCACCATCG ATATGATGCG ACAATTAGAA TTAAATTTTA AAGGAGAAAA AAGATATTAT 121 TAGATTACAT TCGAGAACTA ATTGAAACAG AACCCTTCCT AGAAGGTGGC TGCGTAAAAT 181 TAGTTACTCA TCTAATATCT GTAACAAATA TTAGTTTTAC GAATGAGAAC TTATTGAAAC 241 AGAACCCTTC CTAGAAGGTG GCTGCGTAGA TTAGTTACTT TACTAATATT TGTTAATTGT 301 AAGTTGTAAC TTATAAGTTC TATTGAATAA ATTTTTTTAT ACAAAAAAAA AA Predicted gene structure (within gDNA segment 14457 to 12409): Exon 1 13524 13217 ( 308 n); cDNA 1 309 ( 309 n); score: 0.911 PPA cDNA 343 352 MATCH C06HBa0046G10.1-1- SGN-U322024+ 0.911 308 0.875 C PGS_C06HBa0046G10.1-1-_SGN-U322024+ (13524 13217) Alignment (genomic DNA sequence = upper lines): TGCAGTGATG ATAAATTAGA GTCACAAGAG TTTCGGGCAA GTTTGCCAAC ACCGAAGGAT 13465 |||||||||| || ||||||| | ||||||| |||| ||| |||||||||| |||| |||| TGCAGTGATG ATGAATTAGA GGCACAAGAA TTTCTAACAA GTTTGCCAAC ACCGGAGGAC 60 ATCACCATCG ATATGATGCG ACAATTAGAA TTAAATTTTA AAGGAGAAAA AAGATATT-T 13406 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||| | ATCACCATCG ATATGATGCG ACAATTAGAA TTAAATTTTA AAGGAGAAAA AAGATATTAT 120 TAGATTACAT AAGAGAACTA ATTGAAAAAA AACCCTTCCT AGAAGGTGGC TGCGTAAAAT 13346 |||||||||| |||||||| ||||||| | |||||||||| |||||||||| |||||||||| TAGATTACAT TCGAGAACTA ATTGAAACAG AACCCTTCCT AGAAGGTGGC TGCGTAAAAT 180 TAGTTACTCA CCTAATTTTT TTAACAGATA TTAGTTTTAA GTATTAAAAC TTATTGAAAC 13286 |||||||||| ||||| | | ||||| ||| ||||||||| | || | ||| |||||||||| TAGTTACTCA TCTAATATCT GTAACAAATA TTAGTTTTAC GAATGAGAAC TTATTGAAAC 240 AGAACCCTTC CTAGAAGGTG GCTGCGTAGA TTAGTTACTC CACTAATATT TGTTAATTGT 13226 |||||||||| |||||||||| |||||||||| ||||||||| ||||||||| |||||||||| AGAACCCTTC CTAGAAGGTG GCTGCGTAGA TTAGTTACTT TACTAATATT TGTTAATTGT 300 AAATTCTAA 13217 || || ||| AAGTTGTAA 309 hqPGS_C06HBa0046G10.1-1-_SGN-U322024+ (13524 13217) ******************************************************************************** EST sequence 3 +strand 750 n (File: SGN-U337507+) 1 TTGAANACAT AAGCTGGAGC TCCACCGCGG TGGCGGCCGC TCTAGAACTA GTGGATCCCC 61 CGGGCTGCAG GGTGGAATTC TCTTTACGAA ATGCTTTCGG TTGCTTATAA ATATAGAAGA 121 CCCATACAAA TGGTTTTTAA TGCCATAATG CTGACCCATT AGATAGAATT TGTGATGAAG 181 ATTGGGAAGA AACTAAAGAA CGATTACAAT TTTTAAGACT TTTTTATGAT GCTACTACCA 241 TGTTTTCGGG AATTTATTAT CCTACTATTT CATCCGTATT AATAAATATT TGTGCTCTTT 301 CAATTCGATT TTGTAAATAT AAAAAAATAG ATAAATTTAG AGTTGCAATT GAAGGTATGA 361 TTGAAACATT TTAAAAATAT TTTTTTCCTA TTCCTCAAGC TTTTTTAACG GCTACTTTAC 421 TTCATCCTGC TTATAAATTA CAAGGTGTGC AAGGCCTTGT TGACACTTTT TATAAAAAGT 481 TAGAAATTTT ACCGGAAGAA ATTTTAAATT GTCAAGCGTG TAGTCTAGCA TAAAAGTAGA 541 AGCAAAAGTT TTGTATGAAA AATATAGAAC TATTGAAAAT TTTCAAGGAG AAGTTGGTCA 601 AACATCTAAT GTTGAGATTG ATTCGTCACT TCCAATTTCA TGTTATAATG CGAGGTTTTT 661 CTTGGTCTTA ATTCTACTAA TCGTGATAAT TTTGAAGAAT ATCTTAATCA ATCTTTAGAA 721 GTATTGAAAA TCAAAGATTG GCATGAAGAA Predicted gene structure (within gDNA segment 16066 to 9679): Exon 1 14423 13746 ( 678 n); cDNA 72 749 ( 678 n); score: 0.880 MATCH C06HBa0046G10.1-1- SGN-U337507+ 0.880 678 0.904 C PGS_C06HBa0046G10.1-1-_SGN-U337507+ (14423 13746) Alignment (genomic DNA sequence = upper lines): GTGGAATTCA TTTTACGAAA TGTTTTCAGT TGCTTACAAA TATAGAAGAC CCATACAAAT 14364 ||||||||| ||||||||| || |||| || |||||| ||| |||||||||| |||||||||| GTGGAATTCT CTTTACGAAA TGCTTTCGGT TGCTTATAAA TATAGAAGAC CCATACAAAT 131 -GTGTTTAAT GTTCATAATG CTGACCCATT AGATAGAATT TGTGATGAAG ATTGGGAAGA 14305 || |||||| | ||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGTTTTTAAT G-CCATAATG CTGACCCATT AGATAGAATT TGTGATGAAG ATTGGGAAGA 190 AACTAAAGAC CTATTACAAT TTTTAAGACT TTTTTATGAT GCAACAATCA TGTTTTCTGG 14245 ||||||||| | |||||||| |||||||||| |||||||||| || || | || ||||||| || AACTAAAGAA CGATTACAAT TTTTAAGACT TTTTTATGAT GCTACTACCA TGTTTTCGGG 250 AATTTATTAT CCTACTATTT TATCAGTATT AATAAATATT TGTGCTCTTA CAATTCAATT 14185 |||||||||| |||||||||| ||| ||||| |||||||||| ||||||||| |||||| ||| AATTTATTAT CCTACTATTT CATCCGTATT AATAAATATT TGTGCTCTTT CAATTCGATT 310 TTCTAAATAT AAAAAAATAG ATAAATTTAA AGTTGCAATT GAAGGTATGA TTGAAAAATT 14125 || ||||||| |||||||||| ||||||||| |||||||||| |||||||||| |||||| ||| TTGTAAATAT AAAAAAATAG ATAAATTTAG AGTTGCAATT GAAGGTATGA TTGAAACATT 370 AAAAAAATAT TTTTTTCTTA TTCCTCAAAT TTATTTAACT GCTACTTTAC TTTCATCCTG 14065 |||||||| ||||||| || |||||||| || |||||| |||||||||| ||||||||| TTAAAAATAT TTTTTTCCTA TTCCTCAAGC TTTTTTAACG GCTACTTTAC -TTCATCCTG 429 ATTATAAATT ACGAGGTGTG CAGGGCCTTA TTGACACTTT TTGTGAAACT TAAGAAATTT 14005 ||||||||| || ||||||| || |||||| |||||||||| || | ||| | |||||||| CTTATAAATT ACAAGGTGTG CAAGGCCTTG TTGACACTTT TTATAAAAAG TTAGAAATTT 489 TACCTAAAGA AATTCCAAAT TGTGAAACGT GTAAGTCTAG CATAAAAGTA GAAGCAAAAA 13945 |||| |||| |||| |||| ||| || ||| || ||||||| |||||||||| ||||||||| TACCGGAAGA AATTTTAAAT TGTCAAGCGT GT-AGTCTAG CATAAAAGTA GAAGCAAAAG 548 TTTTGTATAA AAAATATAGA ACTAGTGAAA ATATTGAAGG AGAAGTTGGT CAAACTTCTA 13885 |||||||| | |||||||||| |||| ||||| || || |||| |||||||||| ||||| |||| TTTTGTATGA AAAATATAGA ACTATTGAAA ATTTTCAAGG AGAAGTTGGT CAAACATCTA 608 ATCAAGATAT TGATTTTGAA GTTCGAATTT CAACTTAT-A TGAGAGG-TT TTCTTTGTCT 13827 || || || ||||| | ||| ||||| || |||| | || |||| || ||||| |||| ATGTTGAGAT TGATTCGTCA CTTCCAATTT CATGTTATAA TGCGAGGTTT TTCTTGGTCT 668 TAATTCTACT AACCGTGATG ATTTAGAAGA ATATATTAAT CAATCTTTAG AAGTATTTGA 13767 |||||||||| || |||||| |||| ||||| |||| ||||| |||||||||| ||||||| | TAATTCTACT AATCGTGATA ATTTTGAAGA ATATCTTAAT CAATCTTTAG AAGTATTGAA 728 AATCAAAGAT GGCAATGAAG A 13746 |||||||||| | |||||| | AATCAAAGAT TGGCATGAAG A 749 hqPGS_C06HBa0046G10.1-1-_SGN-U337507+ (14423 13746) ******************************************************************************** EST sequence 4 +strand 1005 n (File: SGN-U337508+) 1 GCGTAGTTAC TCTCATGAGA TGTCTGCCTG ATGTCGACAC TAGCGGATCC CAGAATTTCG 61 GCCCGAGGAC CCATACAAAT GTTTTTTAAT GCTTATAATG CTGACCAGTT AGATAGAATT 121 TGTGATGAAG ACTGGGAAGA AACTAAAGAA CTATTACAGT TTTTAAGACT TTTTTATGAT 181 GCTACTACCA TGTTTTCTAG AATTTATTAT CCTACTATTT CATCCGTATT AATAAATATT 241 TGTGCTCTTA CAATTCAATT TTGTAAATAT AAAAAAATAG ATAAATTTAG AGTTGCAATT 301 GAAGGTATGG TTGAAAAATT TTAAAAATAT TTTTTTACTA TTCGTCAAGT TTTTTTTACC 361 GGCTACTTTA CTTCATCCCG CTTATAAATT ACAAGGTTTG CAAGACCTTG TTGACACATT 421 TTATGAAACT TAAGAAATTT TACCGGAAGA AATTTCAAAT TGTCAAACGT GTTGAGTCTA 481 GCATAACAGT AGAAGCAAAG CTGAAAAATA TAAAACTACG AAAAATTTCA GTANAAGGTT 541 GGTCAAACTC TAATGTTGAG ATTGGATTGT CACTTCCAAT TCACTTATGC CCAAGGTTCC 601 CTGGGGTTTA ATCCTATTAC CGGGATGATT CTTGCAGAAT ATCTTAATCC ATTTTTAGAA 661 CTTCTCGGAA ATTCGCAGTG GGCCCCTAAG TTTCGTTAGG AATGGGCCGT AGCTTTCGCG 721 TCGTCTCCCG CGTCATCTCC GTATCTTCGA CCTCCACTCG GCTGTCCATG TATATGCCTA 781 CTCCTTATCC TCGGCGTCCC TCGACGCTCC GGATGCTCCT AGTGTGTCTC AGCAAACCTT 841 GAGTCTATCG TCGACGCCCG CAGTGCCATT CGTCGTCGAC GATACCACCT GCCGACCGGC 901 TCTATCTTGC TCTGCCCAGC ATGACAAGTC TCTCGCGATT CTGCTTCTTA CGTCGTCTCT 961 CCCTCTGGCT CTGCGCAGTG CTCTCCTTCG TATCACTATG TGCCC Predicted gene structure (within gDNA segment 16016 to 5966): Exon 1 14375 13769 ( 607 n); cDNA 69 666 ( 598 n); score: 0.820 Intron 1 13768 8340 (5429 n); Pd: 0.000 (s: 0.72), Pa: 0.982 (s: 0) Exon 2 8339 8328 ( 12 n); cDNA 667 678 ( 12 n); score: 0.833 MATCH C06HBa0046G10.1-1- SGN-U337508+ 0.820 619 0.616 C PGS_C06HBa0046G10.1-1-_SGN-U337508+ (14375 13769,8339 8328) Alignment (genomic DNA sequence = upper lines): ACCCATACAA ATGT-GTTTA ATGTTCATAA TGCTGACCCA TTAGATAGAA TTTGTGATGA 14317 |||||||||| |||| |||| ||| | |||| |||||||| |||||||||| |||||||||| ACCCATACAA ATGTTTTTTA ATGCTTATAA TGCTGACCAG TTAGATAGAA TTTGTGATGA 128 AGATTGGGAA GAAACTAAAG ACCTATTACA ATTTTTAAGA CTTTTTTATG ATGCAACAAT 14257 ||| |||||| |||||||||| | |||||||| ||||||||| |||||||||| |||| || | AGACTGGGAA GAAACTAAAG AACTATTACA GTTTTTAAGA CTTTTTTATG ATGCTACTAC 188 CATGTTTTCT GGAATTTATT ATCCTACTAT TTTATCAGTA TTAATAAATA TTTGTGCTCT 14197 |||||||||| ||||||||| |||||||||| || ||| ||| |||||||||| |||||||||| CATGTTTTCT AGAATTTATT ATCCTACTAT TTCATCCGTA TTAATAAATA TTTGTGCTCT 248 TACAATTCAA TTTTCTAAAT ATAAAAAAAT AGATAAATTT AAAGTTGCAA TTGAAGGTAT 14137 |||||||||| |||| ||||| |||||||||| |||||||||| | |||||||| |||||||||| TACAATTCAA TTTTGTAAAT ATAAAAAAAT AGATAAATTT AGAGTTGCAA TTGAAGGTAT 308 GATTGAAAAA TTAAAAAAAT ATTTTTTTCT TATTCCTCAA -ATTTATTTA ACTGCTACTT 14078 | |||||||| || |||||| |||||||| ||||| |||| ||| |||| | ||||||| GGTTGAAAAA TTTTAAAAAT ATTTTTTTAC TATTCGTCAA GTTTTTTTTA CCGGCTACTT 368 TACTTTCATC CTGATTATAA ATTACGAGGT GTGCAGGGCC TTATTGACAC TTTTTGTGAA 14018 ||| |||||| | | |||||| ||||| |||| |||| | || || ||||||| |||| |||| TAC-TTCATC CCGCTTATAA ATTACAAGGT TTGCAAGACC TTGTTGACAC ATTTTATGAA 427 ACTTAAGAAA TTTTACCTAA AGAAATTCCA AATTGTGAAA CGTG-TAAGT CTAGCATAAA 13959 |||||||||| ||||||| | ||||||| || |||||| ||| |||| | ||| ||||||||| ACTTAAGAAA TTTTACCGGA AGAAATTTCA AATTGTCAAA CGTGTTGAGT CTAGCATAAC 487 AGTAGAAGCA AAAATTTTGT ATAAAAAATA TAGAACTAGT GAAAATATTG AAGGAGAA-G 13900 ||||||||| ||| | | ||||||| || ||||| ||||| ||| || | || | AGTAGAAGC- -AAA----G- CTGAAAAATA TAAAACTA-C GAAAA-ATTT CAGTANAAGG 538 TTGGTCAAAC TTCTAATCAA GATATTGATT TTGAAGTTCG AATTTCAACT TATATGAGAG 13840 |||||||||| |||||| || |||| | | | ||| || ||| ||| ||| || TTGGTCAAAC -TCTAATGTT GAGATTGGAT TGTCACTTCC AA-TTC-ACT TATGCCCAAG 595 GTTTTCTTTG TCTTAATTCT ACTAACCGTG ATGATT-TAG AAGAATATAT TAATCAATCT 13781 ||| || | ||||| || | | |||| | |||||| | | ||||||| | ||||| || | GTTCCCTGGG GTTTAATCCT A-TTACCGGG ATGATTCTTG CAGAATATCT TAATCCATTT 654 TTAGAAGTAT TTGAAATCAA AGATGGCAAT GAAGATTTAT TAGGATGTGT AGTAGGCGAA 13721 |||||| | | TTAGAACTTC TC........ .......... .......... .......... .......... 666 CCGTTGCATT TCCAACTTTG AGCAAAATGA TTTGTGATGT TCTAGTTATT CAAGCTTCAT 13661 .......... .......... .......... .......... .......... .......... 666 CAGTTGCATT GGATGCTGCT TTCAGTGCGG CAAGGTTTCA AATTGGTGAT CATCGTCATT 13601 .......... .......... .......... .......... .......... .......... 666 CAATTTGCAT TTTGATCATA AACAACAATT TTCGAATTGG TAAATACAAG CAAGTTGGAT 13541 .......... .......... .......... .......... .......... .......... 666 CAAAATGCAA ATTGAATGCA GTGATGATAA ATTAGAGTCA CAAGAGTTTC GGGCAAGTTT 13481 .......... .......... .......... .......... .......... .......... 666 GCCAACACCG AAGGATATCA CCATCGATAT GATGCGACAA TTAGAATTAA ATTTTAAAGG 13421 .......... .......... .......... .......... .......... .......... 666 AGAAAAAAGA TATTTTAGAT TACATAAGAG AACTAATTGA AAAAAAACCC TTCCTAGAAG 13361 .......... .......... .......... .......... .......... .......... 666 GTGGCTGCGT AAAATTAGTT ACTCACCTAA TTTTTTTAAC AGATATTAGT TTTAAGTATT 13301 .......... .......... .......... .......... .......... .......... 666 AAAACTTATT GAAACAGAAC CCTTCCTAGA AGGTGGCTGC GTAGATTAGT TACTCCACTA 13241 .......... .......... .......... .......... .......... .......... 666 ATATTTGTTA ATTGTAAATT CTAAGTTCTA TTGAATAAAT TTGAAGGTTT TAACTTTTAT 13181 .......... .......... .......... .......... .......... .......... 666 TCAAGTTTTT TTTAATACAA TTATTGTCTT GCATTTTAAT TTTAATATAT ACAACTAAAT 13121 .......... .......... .......... .......... .......... .......... 666 ATATACTAAA GTACTAAACT AACTTTAAAA TACTTAATTT AAAACTTGTA ACTTGACATC 13061 .......... .......... .......... .......... .......... .......... 666 TGAAATTTCA AGTTTACATT ACTTTAAACT TCTCAAATTT GAAATTTAAA ACTTTAAAGT 13001 .......... .......... .......... .......... .......... .......... 666 TGAAACTTGA AATTTGAACA TGAAGCTTGA AATTTGAAAT TTGAAACATG AAGCTTGATT 12941 .......... .......... .......... .......... .......... .......... 666 TTTGAAAATT GAAAATTGAA AATTGAAAAT TGAAAATCGA AAATCGAAAA TTTAATTTGA 12881 .......... .......... .......... .......... .......... .......... 666 AATTTGAAAG TTAAAAGTTA AATTTTAAAA TTATAGCTAA AAACATATAA TTCATTACAA 12821 .......... .......... .......... .......... .......... .......... 666 ATAAATAAGT ATTTAAAAAA TAAAAAAGAT CCCCCGTCCC GTCCCCCCAA ATCCCATCCC 12761 .......... .......... .......... .......... .......... .......... 666 ATCCCGTGTA TATAGTGGGA CGGGATGGGA CCTATTTCCG TCCCCCCAAT CACGGTCCCG 12701 .......... .......... .......... .......... .......... .......... 666 GTCCAAATCC CCCTTCCACG TCCCCCGTCC CCTCCCCCTT AGTCCCGTCC CCCAGTCCCC 12641 .......... .......... .......... .......... .......... .......... 666 GTCCCCGTCC CCGTCCCCGT CCCCTTGCCA GCCCTAATCG TGGTGGGTGA TAATTGTTGG 12581 .......... .......... .......... .......... .......... .......... 666 TTGAGAAAGA AAAGATCTAA ATCCGGTGAA AACACGCCGG AAAGAGTATT TTCCAGTCCT 12521 .......... .......... .......... .......... .......... .......... 666 AAGAAGTAGG AGAGAAAATT TTTGGAAATC ATCTAGGAGC ATTTTCCTTG AGAGAACAAT 12461 .......... .......... .......... .......... .......... .......... 666 TAAAAGGAGG CAATTTCTGA ACAGCTAGAA TTAATTCATT TGATTCATTT CCATAACTAT 12401 .......... .......... .......... .......... .......... .......... 666 GTAACTGCTA ATATATGATC ATCATCTTAT TATAGAACTT GTAAACTTCA TTATTCACCT 12341 .......... .......... .......... .......... .......... .......... 666 CTCCCTTCAC CAATAGTGTT CATTCTATAA ATGTGCGAGG AGAATATGAT TCTAGCAGTA 12281 .......... .......... .......... .......... .......... .......... 666 GAATGACAAG TCAAAAATGT GAAAGACAGA TGATGAGTGA CAATTCAGAG AAAGTTTGCT 12221 .......... .......... .......... .......... .......... .......... 666 TTGTTTGATT GATGCAGTAT AAGACTTCAA ATAGTACGAG ACAACACCTA TATAAAATGC 12161 .......... .......... .......... .......... .......... .......... 666 AAATTACAGA CAAACCTGAA GAGGAGTTCC AGTCAAAAGG ACACGATGTC TACTAGCGTA 12101 .......... .......... .......... .......... .......... .......... 666 CTGCTTCAAT GAAGAAAACA GCTTTGAGTC CTTGTTTTTG AGACGGTGAC CTTCATCAAC 12041 .......... .......... .......... .......... .......... .......... 666 AATCTAAATA CGAATGGCAG CGCCCTTAAG AAAAGAAAAA CATAAAACAA GTAACAACAC 11981 .......... .......... .......... .......... .......... .......... 666 ACTTGAGAAT TAAAGCAATT ACCATGCACT CCCACTTGAT AGGCTTCAAA GAGGCCGAGT 11921 .......... .......... .......... .......... .......... .......... 666 CCATGTTGAT CATTTCGTAT GATGTGAGAA GGACATCAAA TTTTGTTCTA TCTTTCTTAC 11861 .......... .......... .......... .......... .......... .......... 666 TTTCACCAAC TGTCTGACAA GATTTCTTTT TTTTGATCTT GTTAGAATTT TTGGGGAAGA 11801 .......... .......... .......... .......... .......... .......... 666 AAAATTCATA TTCCCTAATA ACAGCACGAG CTTGTGCAGA ACCAACGTAC ATAACCTACA 11741 .......... .......... .......... .......... .......... .......... 666 GCATCACTTC TCCTTAGAAA AAGCATATCA AATATTCATG ATAGAAATTA AAAAAAATCC 11681 .......... .......... .......... .......... .......... .......... 666 AACTTACCAC ATTCATTTGA GGAGCCCAAG TGGCAAACTC CCGCTCCCAA TTTCTCAATG 11621 .......... .......... .......... .......... .......... .......... 666 TAGAAAGAGG AGCAACTACT AAATGTGGAG AGATATCCTC TTCAAAAAGA GAGGCTAGAA 11561 .......... .......... .......... .......... .......... .......... 666 ATGCAATACT CTGTATTGTT TTGCCTGCAG GCCTTATAAT GCATCAGAAA AGAACAATTA 11501 .......... .......... .......... .......... .......... .......... 666 TAGAAGAAAC TATATGCCGA CACGAGTAGT ACCACTAATT CACCTAGAAT TCACATAGAA 11441 .......... .......... .......... .......... .......... .......... 666 GTAATTATTA TATAAGAAAC TGGTATGGGA AAAGACTAGA AACAGGGGAA AAAGAAAAAT 11381 .......... .......... .......... .......... .......... .......... 666 AAACTCACCA AGCCCCATCT CATCTGCAAG TATCACATGT GTTTGTTTAG ACCAAGAAAA 11321 .......... .......... .......... .......... .......... .......... 666 ACGTAGGAAA TTCAGCCCTT CAAGCTGATA CGGATGCAGT GAGCCTTTAT ATCAACCAAA 11261 .......... .......... .......... .......... .......... .......... 666 AATGAAGATC AATAGAACTC TTTCAGATGA GTAGAATGAT TTCTAAAAAG GAACATCGAG 11201 .......... .......... .......... .......... .......... .......... 666 GATACCTCCA GAAAGAAATT CGGGACTCCT CTCATACTGT TGAAAAAGTT CTCTGGGTTT 11141 .......... .......... .......... .......... .......... .......... 666 CAGTTTTAAT TCAGTAGTCT CTTTAGGCAC ACTATTTTGT TTACTTGAAG ACGCTTTGTC 11081 .......... .......... .......... .......... .......... .......... 666 ATCTCTAAAC TGAACTCTAT GATATCGTTC AATTTCCTGC TGAAAAGAAG AAATGTCCGA 11021 .......... .......... .......... .......... .......... .......... 666 TTCAAATTCC CAGTAGCACT CATCATAAGG AAGCTCCTTC CACTTAACAA GATACTCTTT 10961 .......... .......... .......... .......... .......... .......... 666 CTCTTCACCT TCTCCCCTGT AAGTACAATA GCAATTACTT AGTGCAATTA CACCTGAAAC 10901 .......... .......... .......... .......... .......... .......... 666 TTAGACCAAA TTCCATATAA TACACCACAA ATGAACTATT TAAGAAAAAA ACTAAAGAAA 10841 .......... .......... .......... .......... .......... .......... 666 ATAGGTGTTA TCTGCAAAAC AATTTCTGCT ATCACTTGTT CTTTCAGAAC CACAAAAGAT 10781 .......... .......... .......... .......... .......... .......... 666 GGGAAGATTT TTGAATTAGC ACAAAATAAC CACGAGCACC AAACATAATC TATCTTACCA 10721 .......... .......... .......... .......... .......... .......... 666 ACAGAGATAA CTTCCTAATA GAAACCTAGG CTAGATATGT TATATGGTCA GAAAAACTTG 10661 .......... .......... .......... .......... .......... .......... 666 ACATCGGTAA CATCACTACA CCACCTCTGT TTCCACTTTC CAGAACTGAT TATAGCACAT 10601 .......... .......... .......... .......... .......... .......... 666 TCACTTGGTA TCTCATATTC CCACAAAAGG CATCACTCAT ACAATATTCC ATTAGCACCA 10541 .......... .......... .......... .......... .......... .......... 666 AAATCATTAA TGCAATAGGT GAAGTAATCT ACAACTCTCT AAATCATTCT AGGCATTGAC 10481 .......... .......... .......... .......... .......... .......... 666 AATATACCAA GACTTTCAGT ACATGGCAAA ATGCAATAAG AACAATTATC ACAAATAACA 10421 .......... .......... .......... .......... .......... .......... 666 TAGTATGATT TATAGATCTA CAAAAATTAG TTTCACTAAG TTAGATGAAT CTTAATTCTC 10361 .......... .......... .......... .......... .......... .......... 666 AAGGCTTACA TACTTCTTGA TTGGAGCACA CTGTTCATCA CTTCATCTTT TCTTTGATGA 10301 .......... .......... .......... .......... .......... .......... 666 AGTAACAAAT TTTATTTAAA AGTCTCAAGG CTTACATACT TCTTGATAGG AGCACACTGT 10241 .......... .......... .......... .......... .......... .......... 666 TCATCACTTC ATCTTTTCTT TGATGAAGTA ACAAATTTTA ATAAAAAGGG CAAAAGTGTG 10181 .......... .......... .......... .......... .......... .......... 666 CCCGTATACA AGAAATATAC CAAAAAATAG AAAACCTTAC AAAAAATGAT CTTCTACATA 10121 .......... .......... .......... .......... .......... .......... 666 TAGCACTAAT CATCTATGCA TGTAGGGATC TTGTGGGTGC ACCAAAAAGA AACAAGGAAA 10061 .......... .......... .......... .......... .......... .......... 666 TAGACTATTC CTCAAGTGTT TAAAATCTTT CACTACTCCC ACAAAAGCTC TCTTATTCCT 10001 .......... .......... .......... .......... .......... .......... 666 CTCTCTCTCT CTCTCTCTCT CTCTCTCTCT CTCCATATGA TCCACACAAG TGCAGAGGAG 9941 .......... .......... .......... .......... .......... .......... 666 CAAAATCACA CTCCCTGCAT CTTCTCTTCC TTCTTTTACA GGCTCAACTA AACATTGTTT 9881 .......... .......... .......... .......... .......... .......... 666 CTTTCACAAT GCTCGGGATC ACCCACTTAG ATCTGAACCA TCTCAGAATT TCTCAGTTCC 9821 .......... .......... .......... .......... .......... .......... 666 CGCCATAAAC AAGAAACCAC CTAACTATGT AAAGACGGTG ATTCCCATAG GAGCACATTG 9761 .......... .......... .......... .......... .......... .......... 666 TTCATAGAAC TCTTAACTTT CTCAATGAGA TTACTTTGTA GTTACTATTT TCGTTATTGA 9701 .......... .......... .......... .......... .......... .......... 666 GGTCACCATA ATTTAACAAT ATGACCTCTC CTTAGAATCA CAGGTTGGCT TTGCAGCTGC 9641 .......... .......... .......... .......... .......... .......... 666 TTATCCTTGT ATTCTAGCTA TTTAACATAC CATAATTGTT ACCAAGGATA GTCGAGAAAA 9581 .......... .......... .......... .......... .......... .......... 666 TAAATACAAG TAGGACTGTA GGAGATTACA AAGGATTGAA AATGAAAGAC TCGCAGCCTG 9521 .......... .......... .......... .......... .......... .......... 666 ATAAACATCA TATTGACATC TCGTTTGGAG TGTATGGGAT GAGAGAAATA AATAGTAAGA 9461 .......... .......... .......... .......... .......... .......... 666 ACAGGGTAGA AAGTGTCTTA GATCAACAGA AAGCATTAAA AGGTCCTTTT CATTTCACTT 9401 .......... .......... .......... .......... .......... .......... 666 GTATTTCTCG TGTAGGAGAG AATATTCTGT TCTGTTGATA GCTTGACAAG CTTGAATAAC 9341 .......... .......... .......... .......... .......... .......... 666 TCGGGTTAAG TAATATACAC AATCTGTAGA TATACTTTTT GGCACTGACT CGATGTTTCT 9281 .......... .......... .......... .......... .......... .......... 666 TAATAAACTT TCCACAAATC AAAAGGCAAT TTAACAATAT GACTTCTACA AACTTAGAGC 9221 .......... .......... .......... .......... .......... .......... 666 TTTAACATTC AATTCTTAAA AGTTATCATT GCCATACAGG ACCGGAGAAA AAGAAATTGG 9161 .......... .......... .......... .......... .......... .......... 666 GGCCCAGACT GACAGAAGAG AGAGCACAAA AACGAGAGTG AGGGCACAGG CTCACCTGTT 9101 .......... .......... .......... .......... .......... .......... 666 GATTGAGCCA TAACATGCTC TTTGGTAGAG CCCTCACCTC TGACGGATAC AGCTAGCGCT 9041 .......... .......... .......... .......... .......... .......... 666 AGGAGCCTAG AAAGGTATAT AGGCACAGGT TCATTCAACT CAATCTAATA GCCTATCAAT 8981 .......... .......... .......... .......... .......... .......... 666 CCGGCTCTAA CAAAGGAGAG TTTTTGCACA GGCTCATCAT TGGAGGTCGA ACTGAGACAA 8921 .......... .......... .......... .......... .......... .......... 666 GAGGAAGAAG TGGGATTGAT AACTTTCAAG AAACCGGTGG AAAGCAAGCA TTATGTCAGA 8861 .......... .......... .......... .......... .......... .......... 666 TTTTCACAAA CTCTAACACA AGATCCATCT ATGATTGCCG GCATAACCAT AAAAAAGATC 8801 .......... .......... .......... .......... .......... .......... 666 ATTAAGAAAG TGTGAACATG TCCCACATCG GTTGAAGAAG TGGCCATTGT CTCCTTATAT 8741 .......... .......... .......... .......... .......... .......... 666 GATCTTGGAG CCACGAGGTT ATGGGGAGAT AAACCAGACG GTTTGGTGTT TCTTGGGTAA 8681 .......... .......... .......... .......... .......... .......... 666 TGTCAAGATC TGTGAAGGAG TTGATGATCA GTTGGAAGAG TGGAGCTAGA AGGAGGAGGC 8621 .......... .......... .......... .......... .......... .......... 666 ACAAGGTGAG GCATGTTACT CCATTTGCGA TAATGTGGGT CATTTGGAAA GAGAGGAATA 8561 .......... .......... .......... .......... .......... .......... 666 GGAGAGAATT TGAGCGTGTG GAGATGAGAT TTTCTCAATT GAAAGGTAGT CTCCGATCCC 8501 .......... .......... .......... .......... .......... .......... 666 TTATTTTCTT GTTGGTGAAC CCATGTAATT CCTGTTTGTA TAGAGGATTG GGTGCCCTTT 8441 .......... .......... .......... .......... .......... .......... 666 GGAGAAAACC AAATTATGCA GGTTTCTCCA ATTTGGTATA TCTTTGTATA CAGCCATGTT 8381 .......... .......... .......... .......... .......... .......... 666 GGCCTTGTTA TTATCAATGA AATCTTTTTT TTTATGACAA GGGAAACCCG CAG 8328 ||||| || ||| .......... .......... .......... .......... .GGAAATTCG CAG 678 hqPGS_C06HBa0046G10.1-1-_SGN-U337508+ (14375 13769) ******************************************************************************** EST sequence 7 +strand 1478 n (File: SGN-U322096+) 1 AATTCTCATA TTATTAGAAT CCATTTTTTT CAATTTTCAA TTCAAAATTT TCATATTATG 61 GCAATAAAAA TAATTATATT ATCTCATATT CGTTATCAAG TATTGGCTTG GAGTTACAAA 121 TTACAAGTTA CAACAAATCA CAAGCTTCAA CAATCGGTTT AACGTCTGCT ATTAACGCAG 181 ACGTTTGGTA CATTCGTTTC ATAATATTTA TATTGTATTA TGCGTCTTTA CTTTTGTGTT 241 ATTATATATA AAATTAAGTA TGAGTTCTAG CAAAAAAATA GTGGTTAAGG AAAAGAGAAA 301 GCACAAGATA ACGAAGAAAG TAGACTTTTT AAGTTATTTA ATTTTGATAA AAAAAAATAG 361 TAAAGAAAAA AAGAGTAGTA GAAGTGGTGG TACTTCATCT AAATCAACGA GTAAAGTTAG 421 ATTTAACATA AATGATTCTA CTTATGTGGA TAATACTCCT TATAATATTG ATTCAAATGT 481 TCAACTCGAT CACGAAAGTT TAGAACGACG TTATGGTAAT ATTAATCCTA TTGTTGATGA 541 AAATTCAGGG GAAGAAGTAG AAACTCATTT CGGAGAAGAA GAGTTATATG AAACACCTAC 601 TAGTCCGGTG ACAGAAGTTT CAAATGACAC TATCAATTTA CCGGAGCAAA ATTTTGAGCA 661 TCCACCCCTT ATACCTCCCA CAAGGGAGAA GGTGAAGTAT CAACGACCTA AAACTTCTAT 721 TGTGTGGCAA TTTATGACTT ACGATAAAGA AAATAGTGTT GCTATTTGTA ATAAGTGTAA 781 GCAAGCTTTT AAACATAAAC AAGGTGGGGG GTCAAGGTGG AACGGGGGGA TTAAATAGAC 841 ATTTGTTATC TTGTGTGCCG ATTCAATATA AAGAAGCTAA AGCATTAGCC AATAGAAAAA 901 AGGGAATTTC AATTAATGAA TTAGATATTA CCGGTAATGC ATCGAGAGCG GCTTCTAACG 961 GTTCAAGGAA CATTAGATCC TTTTAACCCC GCTGGTCCAA TAATACAACG TAAATATAAT 1021 AAGGAATTAG ATCGGGAAAA TTTAGCTAAA ATGGTTTCTG TTTGTGGTTT GCCTTATAGT 1081 TTTCCTTCAA ATCCCGGTTT TGTCGAATAT ATTCAACAAA CTTATAATCC GGATTATAGA 1141 GGCTTTTCAA GAAATACTGT CAAAACTGAT GTTTTTGAAC ATCAAGGTAA ACATTGTCAA 1201 TTTCTTCGTT GTCTATTTAG CATAGTAGAT AGTAGAGTGT CTATTACTTC GGACATGGGT 1261 CGTAGTGTTA ATGGAAATGA TCATTTAACA GTAACTGCAC ATTGGATTGA TCATAATTGG 1321 AATTTGCAAA AAAGAATTAT ATGTTATAAA CTATGTATAG AGAAAAAAAC TGGTGCATAT 1381 TTAGCTTCAA ATATTTTAAG TGTTTTAGAT TATTACATGA TTATAGATAA AATAATGTCT 1441 GTCGCATTAG ATAATGCATC TAATAATACA AATGCTGC Predicted gene structure (within gDNA segment 16772 to 13529): Exon 1 16172 14672 (1501 n); cDNA 1 1476 (1476 n); score: 0.877 MATCH C06HBa0046G10.1-1- SGN-U322096+ 0.877 1501 1.016 C PGS_C06HBa0046G10.1-1-_SGN-U322096+ (16172 14672) Alignment (genomic DNA sequence = upper lines): AATTCTCATA TTATTATAAT CCATATATTT CAATTTTCAA TTCTAAATTT TCATATTATT 16113 |||||||||| |||||| ||| |||| | ||| |||||||||| ||| |||||| ||||||||| AATTCTCATA TTATTAGAAT CCATTTTTTT CAATTTTCAA TTCAAAATTT TCATATTATG 60 TTATATATAT ATATATATAT ATATATAAAA TCTCATATTT GTTATCAAGT ATTGG-TTGG 16054 | ||| | | ||| || | |||| | | ||||||||| |||||||||| ||||| |||| GCA-ATA-A- AAATA-AT-T ATAT-T---A TCTCATATTC GTTATCAAGT ATTGGCTTGG 111 AGTTTCAAAT TACAAGTTAC AACAAATCAT AAGCTTCAAG AATCGATTTA ACGTCTGCTA 15994 |||| ||||| |||||||||| ||||||||| ||||||||| ||||| |||| |||||||||| AGTTACAAAT TACAAGTTAC AACAAATCAC AAGCTTCAAC AATCGGTTTA ACGTCTGCTA 171 TTAACGCAGA CGTTTGGTAC ATTCGTTTCA TAATATTTAT ATTTTATTTT TCGTCTTTAT 15934 |||||||||| |||||||||| |||||||||| |||||||||| ||| |||| | |||||||| TTAACGCAGA CGTTTGGTAC ATTCGTTTCA TAATATTTAT ATTGTATTAT GCGTCTTTA- 230 TTTTTGTGTT ATTATTATTT TTATATTACA TTTTATATAT AATTAAGTAT GAGTTCTAGC 15874 ||||||| ||| | || | | |||| | |||||||||| |||||||||| CTTTTGTG-- ----TTA--- -T-TA-T--A ---TATA-A- AATTAAGTAT GAGTTCTAGC 271 AAAAAAAAAT ATCGGTAAAG GAAAAGAAAA AGAACAAGAT AACGAACAAA GTGGAATTTT 15814 |||||||| | ||| ||| ||||||| || || ||||||| |||||| ||| || || |||| --AAAAAAAT AGTGGTTAAG GAAAAGAGAA AGCACAAGAT AACGAAGAAA GTAGACTTTT 329 TAAAATATTT AATTTT-AGT AAAAAAAATA ATAAAGAAAA AAAGAGTAGT AAAAGTGGTG 15755 ||| ||||| |||||| | |||||||||| ||||||||| |||||||||| | |||||||| TAAGTTATTT AATTTTGATA AAAAAAAATA GTAAAGAAAA AAAGAGTAGT AGAAGTGGTG 389 GTACTTCATA TAAATCAACG TGTAGAGTTA GATTTAACCC AAATGATTCT ACTTATGT-- 15697 ||||||||| |||||||||| ||| ||||| |||||||| |||||||||| |||||||| GTACTTCATC TAAATCAACG AGTAAAGTTA GATTTAACAT AAATGATTCT ACTTATGTGG 449 -TGATACTCC TTATGATATT AATTCAAATG TTCAACTCGA TCATCAAAGT TTAGAACGAA 15638 | ||||||| |||| ||||| ||||||||| |||||||||| ||| ||||| ||||||||| ATAATACTCC TTATAATATT GATTCAAATG TTCAACTCGA TCACGAAAGT TTAGAACGAC 509 GTTATGGTAA TATTAATCCT AATGTTGATG AAAATTCAGG TGAAGAAGTA GAAGCTGATT 15578 |||||||||| |||||||||| | |||||||| |||||||||| ||||||||| ||| || ||| GTTATGGTAA TATTAATCCT ATTGTTGATG AAAATTCAGG GGAAGAAGTA GAAACTCATT 569 TGTGAGAAAA GGATTTAGAA GATACACCTA CTAGTCCGGT GACAGAAGTT CCAAATGACA 15518 | ||||| | || ||| | || ||||||| |||||||||| |||||||||| ||||||||| TCGGAGAAGA AGAGTTATAT GAAACACCTA CTAGTCCGGT GACAGAAGTT TCAAATGACA 629 CTATAAATTC GACGGAGCAA AATTGTGGAC GTCCACTCCT TATACCTCTC ACAAGGGAGA 15458 |||| |||| |||||||| |||| || | ||||| ||| |||||||| | |||||||||| CTATCAATTT ACCGGAGCAA AATTTTGAGC ATCCACCCCT TATACCTCCC ACAAGGGAGA 689 AGGTGAAGTA TCAACGCCCT AAAACTTATA TTGTGTGGCA ATTTATGACT TTCGATAAAG 15398 |||||||||| |||||| ||| ||||||| || |||||||||| |||||||||| | |||||||| AGGTGAAGTA TCAACGACCT AAAACTTCTA TTGTGTGGCA ATTTATGACT TACGATAAAG 749 AAAATAGTGT TGCTATTTTG TAATAAGTGT AAGCAACCTT TTAAACATAA ACAAGGT-GG 15339 |||||||||| ||||| |||| |||||||||| |||||| ||| |||||||||| ||||||| || AAAATAGTGT TGCTA-TTTG TAATAAGTGT AAGCAAGCTT TTAAACATAA ACAAGGTGGG 808 GGGTCAAGGT GGGAC-GGGG GATTAAATAG ACATTTGTTA TCTTGTGTGC CGATTCAATA 15280 |||||||||| || || |||| |||||||||| |||||||||| |||||||||| |||||||||| GGGTCAAGGT GGAACGGGGG GATTAAATAG ACATTTGTTA TCTTGTGTGC CGATTCAATA 868 TAAAGAAGCT AAAGCATTAG CCAATAGAAA AAAAGGAATT TCAATTGATG AATTTGATAT 15220 |||||||||| |||||||||| |||||||||| ||| |||||| |||||| ||| |||| ||||| TAAAGAAGCT AAAGCATTAG CCAATAGAAA AAAGGGAATT TCAATTAATG AATTAGATAT 928 TACCGGTAGT GCATCGGTAG GGGCTTCTCA CATAGTTCAA GGAACATTAG ATCTTTCTAG 15160 |||||||| | |||||| || ||||||| | | |||||| |||||||||| ||| || || TACCGGTAAT GCATCGAGAG CGGCTTCT-A -ACGGTTCAA GGAACATTAG ATCCTTTTAA 986 CCCCGGTGGT CCAATAACAC AACGTAAATA TAATAAGGAA TTTGATCGCG AAAATTTAGC 15100 ||||| |||| ||||||| || |||||||||| |||||||||| || ||||| | |||||||||| CCCCGCTGGT CCAATAATAC AACGTAAATA TAATAAGGAA TTAGATCGGG AAAATTTAGC 1046 TAAAATGGTT TCTGTTTGTA GTTTGCCTTA TAGTTTTACT TCATATCCCG ATTTTATTGA 15040 |||||||||| ||||||||| |||||||||| ||||||| || ||| |||||| |||| | || TAAAATGGTT TCTGTTTGTG GTTTGCCTTA TAGTTTTCCT TCAAATCCCG GTTTTGTCGA 1106 ATAAATTTAA CAAACTTATA ATCCGAATTA TAGAGG-TTT TCAAGAAATA CTGTTAAACA 14981 ||| ||| || |||||||||| ||||| |||| |||||| ||| |||||||||| |||| ||| ATATATTCAA CAAACTTATA ATCCGGATTA TAGAGGCTTT TCAAGAAATA CTGTCAAAAC 1166 TGATGTTTTT GAATTTCAAG GTAAACATTG TTAATTTCTT CGTTGTATAT TTAGCATATT 14921 |||||||||| ||| ||||| |||||||||| | |||||||| |||||| ||| |||||||| | TGATGTTTTT GAACATCAAG GTAAACATTG TCAATTTCTT CGTTGTCTAT TTAGCATAGT 1226 ATATAGTAGA GTGTCTATAA CTACGGATAT GGGTCGTAGT GTCAATGGAA ATGATTATTT 14861 | |||||||| |||||||| | || |||| || |||||||||| || ||||||| ||||| |||| AGATAGTAGA GTGTCTATTA CTTCGGACAT GGGTCGTAGT GTTAATGGAA ATGATCATTT 1286 AACTGTTTCA ACTCATTGGA TTGATCATAA TTGGAATTTG CAAAAAAGAA TATTAAGTTA 14801 ||| || | | ||||||| |||||||||| |||||||||| |||||||||| | || |||| AACAGTAACT GCACATTGGA TTGATCATAA TTGGAATTTG CAAAAAAGAA TTATATGTTA 1346 TACACTATGT GTAGAG-AAA AAACTGGTGC ATACTTAGCT TCAAAAATTT TAAGTGTTTT 14742 || ||||||| ||||| ||| |||||||||| ||| |||||| ||||| |||| |||||||||| TAAACTATGT ATAGAGAAAA AAACTGGTGC ATATTTAGCT TCAAATATTT TAAGTGTTTT 1406 AGATTATTAC ATGGTTACAG ATAAAGTAAT GTCTGTTGCA TTAGATAATG CATCTAACAA 14682 |||||||||| ||| ||| || ||||| |||| |||||| ||| |||||||||| ||||||| || AGATTATTAC ATGATTATAG ATAAAATAAT GTCTGTCGCA TTAGATAATG CATCTAATAA 1466 TACAAACGCT 14672 |||||| ||| TACAAATGCT 1476 hqPGS_C06HBa0046G10.1-1-_SGN-U322096+ (16172 14672) ******************************************************************************** EST sequence 1 -strand 871 n (File: SGN-U341005-) 1 TATGCTTATA TAACTGCAGA ACGTCTCTCC CAAATATATT GCCCTGCAGA TCACAAATTG 61 TAAAGGGGAA AACAGCAATA ACTAATCACA ACAAATCCAC CATATAAGCA GTGATTGCAC 121 ATCTCCCATT ATTTTTTGTT CGAATATATG CACAAAATTT TTGACAACAT ATACTCCATT 181 TCAAAAAGAA TAACGGATAT CAGAGTACGA AGGCTCAAAC CATTCGATCT CATTGCAATT 241 TGTAGATCAC TTCTTTCAAA TTTTAAAAAT GAAATGTCCA CATTTAAAAA CTGCATAAAC 301 AGTAGTAATA CTAGAAGTTT CAACTTTTGT AATTTTAAAT TATTACAAAT TTACAAGAAG 361 AATCTATTGG ACCTCAAAAA AGAAATACTA CAAGAACAAC AACAATCCCA GTGTGATCCC 421 ACAAGTGTTG GTGAGGAGGT AGGATGTAGG ATGTATGCAG ACCTTACCCC TACTTTGGGG 481 TAGAGAGGTT GTTTCTGATT GGCTCGAAAA TGTGAAAGAA TGACAAAAGT CCCACATTGG 541 TGGTTAATAA GATGGGTGGA CTCTTTATAA GGCTTGAGTT AGCTTTTGGG GTGTGAGTTA 601 GGCCTAAGAC CTAGTAGACC CAAAATCAAA CATTGCTCAC ACACCAGATG CTAAGCACTG 661 GCATGAGGTG GTGTGTTAAA GAATGACAAA AGTCTCACAT CGGTGGTTAA TGAGATGGGT 721 GAACTCCTTA TAAGACTTGG ACAATTATCC TCCCTTTGAG CTAGCTTTTG CCTCGTGCCG 781 AATTCCTGCA GCCCGGGGGA TCCACTAGTT CTAGAGCGGC CGCCACACAA GAGGGGGTTA 841 CCAGNCCACA GTTAATCNNN NCTAAAGACT T Predicted gene structure (within gDNA segment 22710 to 15058): Exon 1 21813 21726 ( 88 n); cDNA 395 479 ( 85 n); score: 0.676 Intron 1 21725 20622 (1104 n); Pd: 0.355 (s: 0.66), Pa: 0.788 (s: 0) Exon 2 20621 20606 ( 16 n); cDNA 480 495 ( 16 n); score: 0.562 Intron 2 20605 19441 (1165 n); Pd: 0.502 (s: 0), Pa: 0.000 (s: 0) Exon 3 19440 19428 ( 13 n); cDNA 496 508 ( 13 n); score: 0.615 Intron 3 19427 17605 (1823 n); Pd: 0.958 (s: 0), Pa: 0.000 (s: 0.83) Exon 4 17604 17541 ( 64 n); cDNA 509 573 ( 65 n); score: 0.836 Intron 4 17540 17348 ( 193 n); Pd: 0.000 (s: 0.85), Pa: 0.000 (s: 0.98) Exon 5 17347 17308 ( 40 n); cDNA 574 613 ( 40 n); score: 0.975 Intron 5 17307 17266 ( 42 n); Pd: 0.000 (s: 0.98), Pa: 0.000 (s: 0.81) Exon 6 17265 17110 ( 156 n); cDNA 614 770 ( 157 n); score: 0.853 MATCH C06HBa0046G10.1-1- SGN-U341005- 0.799 377 0.433 C PGS_C06HBa0046G10.1-1-_SGN-U341005- (21813 21726,20621 20606,19440 19428,17604 17541,17347 17308,17265 17110) Alignment (genomic DNA sequence = upper lines): AACAACAACA TATCCAATAT AATCTCACAA GTGGCATCTT AGAAGGGTAG AGTCTAGTGC 21754 |||||||||| ||| | | ||| ||||| ||| | || | ||||| | ||| AACAACAACA ATCCCAGTGT GATCCCACAA GTG-TTGGTG AGGA-GGTAG GATGTAGGAT 452 ATACGCAGAC CTTACCC-TA CCTTGGGAAG TAGATGCATC TTCTTGATAC CATCTACGAA 21695 || |||||| ||||||| || | ||||| GTATGCAGAC CTTACCCCTA CTTTGGG--. .......... .......... .......... 479 ATTCTGGTTC CATTAATGAA CTTATTTATT TTTTGTTATG ATGAAGCAAG AGAATTTGAC 21635 .......... .......... .......... .......... .......... .......... 479 ACCATCTATG AGATTCTCTT ACTTCATCAA AACAAAAAAT TATACCATAA AAAGAAATTG 21575 .......... .......... .......... .......... .......... .......... 479 AAAAAATTAT AGTTGATGGA AATATGATAG ATAGTGAAAA GCTGAACATG AGGTATTCTC 21515 .......... .......... .......... .......... .......... .......... 479 ACTTGCAACA AGAATTGTAC ATGTGGTCGA TGAGACAGAT ACCTACTCTC AATGGTGCGG 21455 .......... .......... .......... .......... .......... .......... 479 TTTTAGTAGA TTCCAGAATA TCAAAGGTGT AAGTAAATTA AGTTATCATT TGGAGGAGGA 21395 .......... .......... .......... .......... .......... .......... 479 AGTCTATGAC CCAAGGATAA AAGCCACAAG GCAGTTTTTA TTGCTTTATT CTTGAAAATG 21335 .......... .......... .......... .......... .......... .......... 479 AAAGAGTTCT AAATATCAAA AACTGTGACC TATTAGCTTT GATGGATGCT TTTATAAACA 21275 .......... .......... .......... .......... .......... .......... 479 CATTGCCAAG GTCATCAATG ACATATGACA CAAAAATGCT TACGGTGAAG GAGGAAATTC 21215 .......... .......... .......... .......... .......... .......... 479 TCGACGTTTT CAAAGGGAAA ATTAGGGTAT TAACTGAAGA TGTGTGGAAA TAAAATATTA 21155 .......... .......... .......... .......... .......... .......... 479 GGATTAGACG ATAGTCTTTA CAACATTGCG GCCTAGATGA TTGATCAATG CTATGCTTCC 21095 .......... .......... .......... .......... .......... .......... 479 ATTTTGAAAC AGCAAAGTAT TGTATTGATC CAAGAATTAC AGGAATCTCT CAAAGTGCTA 21035 .......... .......... .......... .......... .......... .......... 479 TGAAAGTTGA GACCAGAAGC CATTTGGATA GAGAGAGAGA AAGAGAGAGA CAGAGACAGA 20975 .......... .......... .......... .......... .......... .......... 479 GAGAGAGACA GAGAGAGAGA GGATTCTTGA ATATACAAAT ATCATTTTTT TGATAAGGTA 20915 .......... .......... .......... .......... .......... .......... 479 TTCTCGAATA TAATATTACC TGTCATAAAT AATTACTGTG TCAGCAGTCG CAAGATTAAT 20855 .......... .......... .......... .......... .......... .......... 479 TCCTAAACCT CCAGCCCTAG TGGATAGAAG GAAGCAGAAT CTTGAAGAAT TCTTTGCATT 20795 .......... .......... .......... .......... .......... .......... 479 AAATCTGTCA ATTCGGATTT GTCGTTCTGC CCCAGGAACT TTTCCATCAA TCCGTTCGTA 20735 .......... .......... .......... .......... .......... .......... 479 GTGCCATTTC TAAAAACATT AACAGGTAAA AATGCATCAT ATTTTGAGAT AATAAAGATG 20675 .......... .......... .......... .......... .......... .......... 479 AATACCAAAT CAGGTTTAAA ATAATATAAT GAACTAGTAT CTTTACCTTA TAGGTACAGT 20615 ||| || .......... .......... .......... .......... .......... ...GTAGAGA 486 AGTCTTCTAG CAAGTCGAGC ATATGCTGAA ATTGTGAATA TATAAGAACT CTGTGACCTT 20555 || | | GGTTGTTTC. .......... .......... .......... .......... .......... 495 GGTCTTTAAG CTTAACCATC ATCTTATCTA GAAGTTGTAA TTTGCCAGAA GATTCCAGCA 20495 .......... .......... .......... .......... .......... .......... 495 GCTGTCTGCC AAATCAAAAT GATCCACAGT GCAGATAAGA TAGGGTAGTT GAAAGAACTC 20435 .......... .......... .......... .......... .......... .......... 495 AAGAATAAAC ATTTTTTACT TCAAAAAAAG CTCTAAGCAC ACCCTTCTTG CAGGCAGGAT 20375 .......... .......... .......... .......... .......... .......... 495 CATCAACGAT CTTACTAGGC AACATTAGTG CTTAGGAAAT TCATAAAACT CCAGTCTCCT 20315 .......... .......... .......... .......... .......... .......... 495 AAAAGAATTT TCTCACTTTA GGCCCTAATG ATCATAAGAA ACTCCTTTGA CTGCAATTTC 20255 .......... .......... .......... .......... .......... .......... 495 CAGATTAAAA CAAAAGATTC TCTCCAAATA AAATGGTATC ATAAAAAAAA TGAAGAATCG 20195 .......... .......... .......... .......... .......... .......... 495 TGCTAAACAT TTTCTTCTAG GGAAATATAT CACTTTGACG TGGAGACATT AAAAGAAAAG 20135 .......... .......... .......... .......... .......... .......... 495 TTGAAAAGGG AGCAACATGT TGATATTGCG GACTCTTCAA AAATATTGTT GGTCGAGTGT 20075 .......... .......... .......... .......... .......... .......... 495 TGGATCCTCC CAAAGTAGTG CATTTTTTGA GGATCCAACA CGGGTGCAAC AATTTGGGGA 20015 .......... .......... .......... .......... .......... .......... 495 ATCCAAGCAA CATAGCAAAA CGCTACTTAT TTAACAAGAC ATCGCTCCGC CACCATCATG 19955 .......... .......... .......... .......... .......... .......... 495 AAAGGGAGAA GAGAACCACT CTCACTTAAC ATATCGCCCC TCCATCCAAC ATTAATGGCC 19895 .......... .......... .......... .......... .......... .......... 495 CTACTCAGAG TAGCACCACT ACCACCTTCC CTTAGCCTCA TAGCCCTTAT CATATTCTCA 19835 .......... .......... .......... .......... .......... .......... 495 CAACTGCCAA CCCCTGTCCT TTTCCCTGAA CAACTTCTCC CCTTCTCATT GGCTTGGTCA 19775 .......... .......... .......... .......... .......... .......... 495 CAGCTCTCAC TAACACACCT CTTCGACCCA CAATATGCTG TTCTTCTACC TGCTATAGTT 19715 .......... .......... .......... .......... .......... .......... 495 GCTGACAATG TTTCCGAATT TTATTAGTGA AAAGATGGGA AACCACCCAC CTTTCTCTGC 19655 .......... .......... .......... .......... .......... .......... 495 CTCCATCTCG GTCACAGATA ACAACAACCC CCACCCTAAT TGTACCCCAG ATTCCCTTCA 19595 .......... .......... .......... .......... .......... .......... 495 TAAATCATGT ATCTCATATT CCACCCCTAC CAGAGATGGT GGCCCCTTCA CCCTCTGCAT 19535 .......... .......... .......... .......... .......... .......... 495 GCTATATTCC TTCGTTAACA AAGAAAAAAG ATAAGACTTC AAACATACCT TCTTAATTAT 19475 .......... .......... .......... .......... .......... .......... 495 TTTTTATTTT ATTCTTTTCT TTTAAAAAAA AACTTGATTT TCTGCAGGCA AGAAATCAAT 19415 ||||| || | .......... .......... .......... ....TGATTG GCTCGAA... .......... 508 GAAATTTATT ATAAGATAAG AAGTGTACTT GGTAAACTCG TTAGTATCCT CTGGTTCAAC 19355 .......... .......... .......... .......... .......... .......... 508 TCCTTCTAAC ATAAATGGAT GACAGCAGAG CTTGCGCAGT TCCATAACCA CATTTATGAG 19295 .......... .......... .......... .......... .......... .......... 508 GGAAATCTGA TAGGCAAGTA TCAACCAAGG TCAGAATTCC TGTTACAGAA CAATAAGCAT 19235 .......... .......... .......... .......... .......... .......... 508 ATATCAAACA AGAAGAAGCT GGAGCACCTG AGCACCTCCC TTGCGAGCCA GTATCTGGAA 19175 .......... .......... .......... .......... .......... .......... 508 GTTACGTGTC AAAATTGCTT TGTAATATTC TTTCTGCTTG CTACTCAATT CCACTCGCAA 19115 .......... .......... .......... .......... .......... .......... 508 AATGAGCTCC TTTTTTGGAG GCAGCTCCTT CATGACATCT TTCTTGACCC CTGCAGCCAA 19055 .......... .......... .......... .......... .......... .......... 508 CAAAACACAC TTACACCAAA GCTCAAGAGT TCCGCATAAA GATAAACACA ATCATGTTTC 18995 .......... .......... .......... .......... .......... .......... 508 TTGAAGCACT GCCCTAGCCC ATAACTATAA GCTTCACTCT GGAACTGCAA GTACATGTAA 18935 .......... .......... .......... .......... .......... .......... 508 TTTGAAAGAA GTACATAAAT TTCAGAAACT TAATCCATTT GACCCGGTAC AGCATTGTAC 18875 .......... .......... .......... .......... .......... .......... 508 TATGTACCTA TGAGTTACAC AGGAATAAGC ATGCATGTGG GGCTTCTGGA GAACGATTAC 18815 .......... .......... .......... .......... .......... .......... 508 ATTCATCTAA TGATGGTGTG GTTGATTTGA GAGGAGGACA ACAAGAAGAA TTTCCAACAA 18755 .......... .......... .......... .......... .......... .......... 508 CAAATGATAT AAGGAGAACT TGGCATCTAC TTCTTGCTTG TTTGACCACC CATCCTCAAA 18695 .......... .......... .......... .......... .......... .......... 508 GGTGTACAAG ATAAAGTATT TAATGGAAAA ACGAACAATA AAAATAAGTT TAATATGATA 18635 .......... .......... .......... .......... .......... .......... 508 TAACTATGGC ATCTGTAATG CGGTTAGCAA AGGCTTGCTT AACAGAGACC TACAATTTAG 18575 .......... .......... .......... .......... .......... .......... 508 GAATCAAACA AAGATGTATG AGTAGCATAG TGAAACACCC TGATAGTGCC TACTTCCACA 18515 .......... .......... .......... .......... .......... .......... 508 AATCAATGTA AACAATAACT ACTTATACAT CTACTGACAA ATCACGAAAT AAAAGCTTGA 18455 .......... .......... .......... .......... .......... .......... 508 GATTTGTACT TCTCAGCAGA TGGGGTGCCA GCATTTTATG AAGTCTTGAA ATCTGTTCTT 18395 .......... .......... .......... .......... .......... .......... 508 CCTGACTAAT ATCCTCAAAT TCCTGTTGGA ATTCCTCCAA GCTTCCAAAC TACAATCAAG 18335 .......... .......... .......... .......... .......... .......... 508 TTCCATATAA AAATTTCACA TCATAACAAA TCAACACGTA AATTGGTTAG AGACGAATGC 18275 .......... .......... .......... .......... .......... .......... 508 TTCAAAAAAT CTGTGGTAGC ACTAACCTTC CCAGCATCAA GGAAGTGCAT AAGCATGAAA 18215 .......... .......... .......... .......... .......... .......... 508 AGTTCATCCA GATTGTTCTG AAAGATGGGG AGAAAAGGAG TGTCATAACC AATAGTTTGC 18155 .......... .......... .......... .......... .......... .......... 508 AGATCACTGT TAGTGGCAGA TAACAGATGA TGGTGATGAG ATGACAATAG ACGATACTCA 18095 .......... .......... .......... .......... .......... .......... 508 TGTTAATAAC AATTATTATT AATATCATAA TAATTAGTTC TACCACTAGT ACTAGTATTA 18035 .......... .......... .......... .......... .......... .......... 508 TTATTATCAG TACAACTACG ACTACTATCA TTGGCACTAA CATCATTATT ACGACAATCC 17975 .......... .......... .......... .......... .......... .......... 508 TAATCATCCT GTTTTTATTA TTGCTGTAAC AATATTAATA TGAGAAGTGC TGTAGGTGAG 17915 .......... .......... .......... .......... .......... .......... 508 TTAAATGTTT TAGATAAATG ACAAAATTCT ACATTCCAAT TATCAGATAC CCTGAAAGGA 17855 .......... .......... .......... .......... .......... .......... 508 TGATAAATGA CAATATTAAT TTTTTTTTAT ACAGGTAAAA TTAATGAATG ACTGTATTCT 17795 .......... .......... .......... .......... .......... .......... 508 CTTTGGAGAG AAACAAAAGA CCAAGTGACC CGCCTACATC ACTACTACCA GTCAATTGGC 17735 .......... .......... .......... .......... .......... .......... 508 AATAAGTTAT GATTGAGATG TTTGCTTTTC ACTTTATTGA TACTTGGGAG CATCTTCAGC 17675 .......... .......... .......... .......... .......... .......... 508 TACCTTGGCA TATGGGAAGT TAATGTTGGA CATTCTGTGA AGGGCCTTTA AAGTCAAATT 17615 .......... .......... .......... .......... .......... .......... 508 CGGGGTGCTT TATGTTAAAG AATGGCAAAA GTCCCACATC GATGGTTAAT GAGATGGGT- 17556 |||| |||| |||| ||||| ||||||||| | |||||||| |||||||| .......... AATGTGAAAG AATGACAAAA GTCCCACATT GGTGGTTAAT AAGATGGGTG 558 AACTCCTTAT AAGGCCGACC TAATTTCACA TGGTATCAGA GCAGGGCCCG TCTCACCCGA 17496 |||| |||| ||||| GACTCTTTAT AAGGC..... .......... .......... .......... .......... 573 TGTTGGGATC CCCAAAAATC AAAAATGTCC ACGCACCAAA TACTAAGTAC TGGCCGCGAG 17436 .......... .......... .......... .......... .......... .......... 573 GTGGGCTGTT AAAAAATGAC AAAAGTCCCA CATAAGAAAT TAATGAGATG GATGGACTCC 17376 .......... .......... .......... .......... .......... .......... 573 TTATAAGGTT TGGGCAATCC TCATCCCTTT GAGCTAGCTT TTGGGGTGTG AGTTAGGCCT 17316 || ||| |||||| |||||||||| |||||||||| .......... .......... ........TT GAGTTAGCTT TTGGGGTGTG AGTTAGGCCT 605 AAGACCTAAC TTCACATGGT ACCAAAGCAG GACCCGTCTC ACCCTATGTT GGAACCCCAA 17256 |||||||| | | ||||| AAGACCTA.. .......... .......... .......... .......... GTAGACCCAA 623 AATCAAA-AT TGTCCACGCA CCAGATGCTA AGCACTGGGC GTGATGTGGG GTGTTAAAGA 17197 ||||||| || || ||| || |||||||||| |||||| ||| ||| |||| |||||||||| AATCAAACAT TGCTCACACA CCAGATGCTA AGCACT-GGC ATGAGGTGGT GTGTTAAAGA 682 ATGACAAAAG TCTCACATCG GTGGTTAATG AGATGGGTGG AAAACTTATA AGGCTTGGGC 17137 |||||||||| |||||||||| |||||||||| ||||||||| | |||||| || ||||| | ATGACAAAAG TCTCACATCG GTGGTTAATG AGATGGGTGA ACTCCTTATA AGACTTGGAC 742 AA-TCTCCTC CCTTTGAGTT AGCTTTTG 17110 || | ||||| |||||||| | |||||||| AATTATCCTC CCTTTGAGCT AGCTTTTG 770 hqPGS_C06HBa0046G10.1-1-_SGN-U341005- (17604 17541,17347 17308,17265 17110) ******************************************************************************** EST sequence 2 +strand 985 n (File: SGN-U314322+) 1 TGTCATTGAA GAATGCAAGC TATTCTATCT TGCTCGTGCA GAAACTACAT CACTGTGGCT 61 TTTATGGACT CTGGTGTTGT TAAGCAGGTA TCAAGATTGG CAGGCACAGG CCAGAGAAGA 121 AGTTTTGCAA GTGTTCGGGA GTCGAAAACC AGATTTTGAT GGATTAAATC GTCTAAAAGT 181 TAGCAGGAAC CCTCACCCGA TGTTGGGGGC CCCAAAATCA AAATTTGCCC ACGCACCAAA 241 TGCTAAGCAC TGGGCTTGAG GTGGATGTTA AAGAATGACA AAAGTCCCAC GTCTGTGGTT 301 AATGAGGTAA CGATGATCTT GTACGAGTCA TTACGGCTAT ATCCCCCGAT AACAGCACTT 361 ACCCGACGGG TTAACGAAGA CATCACACTA GGAGACTTGT CTCTACCAGC TGGTGTACTA 421 GTTTCATTGC CCATGATCAT ATTGCATCAT GACAAAGATA TATGGGGTGA AGATGCAAAC 481 AAGTTCAATC CAGTGAGATT TAGAGAAGGA ATATCAGGTG CAACAAAGGG TCAAGTTACA 541 TATTTTCCAT TTTCATGGGG TCCAAGAATA TGCATTGGAC AAAATTTTGC CATATTAGAA 601 GCAAAGATGA CTCTGTGTAT GATCCTACAA AGCTTCTCTT TTGAATTATC TCCATCCTAC 661 ACACATGCTC CTCAACCCTT GGTAACCACT CAGCCTCAGT ATGGTGCTCC ACTTATTTTT 721 CACAAACTAT AATTTCATAT TTCACGAAGA GTTTATTCAG ACTCGATTCA GTGATGGGGT 781 TACAATATCA AAAATGCGGG TTCAGAAACA GTTTCTCTAT TTCATAAAAG ATAGGGGATT 841 ATGTGTTGTA CTCCGTAGTC TCCCCTGACC CTCATATTGG GTATGTTATT TTTGTGATTT 901 TGACAAACTC AGTAGTTTTG ATTAAAAGCT TGCAATGGTT TGAGCAAATC CACTAAAACT 961 ATTTCACACA AAAAAAAAAA AAAAA Predicted gene structure (within gDNA segment 19951 to 9585): Exon 1 17290 17165 ( 126 n); cDNA 182 306 ( 125 n); score: 0.841 PPA cDNA 970 985 MATCH C06HBa0046G10.1-1- SGN-U314322+ 0.841 126 0.128 C PGS_C06HBa0046G10.1-1-_SGN-U314322+ (17290 17165) Alignment (genomic DNA sequence = upper lines): AGCAGGACCC GTCTCACCCT ATGTTGG-AA CCCCAAAATC AAAA-TTGTC CACGCACCAG 17233 ||||||| || ||||||| ||||||| |||||||||| |||| ||| | ||||||||| AGCAGGAACC --CTCACCCG ATGTTGGGGG CCCCAAAATC AAAATTTGCC CACGCACCAA 239 ATGCTAAGCA CTGGGCGTGA TGTGGGGTGT TAAAGAATGA CAAAAGTCTC ACATCGGTGG 17173 |||||||||| |||||| ||| |||| ||| |||||||||| |||||||| | || || |||| ATGCTAAGCA CTGGGCTTGA GGTGGA-TGT TAAAGAATGA CAAAAGTCCC ACGTCTGTGG 298 TTAATGAG 17165 |||||||| TTAATGAG 306 hqPGS_C06HBa0046G10.1-1-_SGN-U314322+ (17290 17165) Total number of EST alignments reported: 7 ________________________________________________________________________________ Predicted gene locations (2) in segment 1 to 22710: PGL 1 (- strand): 16172 13217 AGS-1 (14423 13593,13519 13217) SCR (e 0.894 d 0.000 a 0.972,e 0.911) Exon 1 14423 13593 ( 831 n); score: 0.894 Intron 1 13592 13520 ( 73 n); Pd: 0.000 Pa: 0.972 Exon 2 13519 13217 ( 303 n); score: 0.911 PGS (13524 13217) SGN-U322024+ PGS (14240 13593,13519 13492) SGN-U322023+ PGS (14423 13746) SGN-U337507+ PGS (14375 13769) SGN-U337508+ 3-phase translation of AGS-1 (-strand): . . . . . . 14423 GTGGAATTCATTTTACGAAATGTTTTCAGTTGCTTACAAATATAGAAGACCCATACAAAT V E F I L R N V F S C L Q I - K T H T N W N S F Y E M F S V A Y K Y R R P I Q M G I H F T K C F Q L L T N I E D P Y K . . . . . . 14363 GTGTTTAATGTTCATAATGCTGACCCATTAGATAGAATTTGTGATGAAGATTGGGAAGAA V F N V H N A D P L D R I C D E D W E E C L M F I M L T H - I E F V M K I G K K C V - C S - C - P I R - N L - - R L G R . . . . . . 14303 ACTAAAGACCTATTACAATTTTTAAGACTTTTTTATGATGCAACAATCATGTTTTCTGGA T K D L L Q F L R L F Y D A T I M F S G L K T Y Y N F - D F F M M Q Q S C F L E N - R P I T I F K T F L - C N N H V F W . . . . . . 14243 ATTTATTATCCTACTATTTTATCAGTATTAATAAATATTTGTGCTCTTACAATTCAATTT I Y Y P T I L S V L I N I C A L T I Q F F I I L L F Y Q Y - - I F V L L Q F N F N L L S Y Y F I S I N K Y L C S Y N S I . . . . . . 14183 TCTAAATATAAAAAAATAGATAAATTTAAAGTTGCAATTGAAGGTATGATTGAAAAATTA S K Y K K I D K F K V A I E G M I E K L L N I K K - I N L K L Q L K V - L K N - F - I - K N R - I - S C N - R Y D - K I . . . . . . 14123 AAAAAATATTTTTTTCTTATTCCTCAAATTTATTTAACTGCTACTTTACTTTCATCCTGA K K Y F F L I P Q I Y L T A T L L S S - K N I F F L F L K F I - L L L Y F H P D K K I F F S Y S S N L F N C Y F T F I L . . . . . . 14063 TTATAAATTACGAGGTGTGCAGGGCCTTATTGACACTTTTTGTGAAACTTAAGAAATTTT L - I T R C A G P Y - H F L - N L R N F Y K L R G V Q G L I D T F C E T - E I L I I N Y E V C R A L L T L F V K L K K F . . . . . . 14003 ACCTAAAGAAATTCCAAATTGTGAAACGTGTAAGTCTAGCATAAAAGTAGAAGCAAAAAT T - R N S K L - N V - V - H K S R S K N P K E I P N C E T C K S S I K V E A K I Y L K K F Q I V K R V S L A - K - K Q K . . . . . . 13943 TTTGTATAAAAAATATAGAACTAGTGAAAATATTGAAGGAGAAGTTGGTCAAACTTCTAA F V - K I - N - - K Y - R R S W S N F - L Y K K Y R T S E N I E G E V G Q T S N F C I K N I E L V K I L K E K L V K L L . . . . . . 13883 TCAAGATATTGATTTTGAAGTTCGAATTTCAACTTATATGAGAGGTTTTCTTTGTCTTAA S R Y - F - S S N F N L Y E R F S L S - Q D I D F E V R I S T Y M R G F L C L N I K I L I L K F E F Q L I - E V F F V L . . . . . . 13823 TTCTACTAACCGTGATGATTTAGAAGAATATATTAATCAATCTTTAGAAGTATTTGAAAT F Y - P - - F R R I Y - S I F R S I - N S T N R D D L E E Y I N Q S L E V F E I I L L T V M I - K N I L I N L - K Y L K . . . . . . 13763 CAAAGATGGCAATGAAGATTTATTAGGATGTGTAGTAGGCGAACCGTTGCATTTCCAACT Q R W Q - R F I R M C S R R T V A F P T K D G N E D L L G C V V G E P L H F Q L S K M A M K I Y - D V - - A N R C I S N . . . . . . 13703 TTGAGCAAAATGATTTGTGATGTTCTAGTTATTCAAGCTTCATCAGTTGCATTGGATGCT L S K M I C D V L V I Q A S S V A L D A - A K - F V M F - L F K L H Q L H W M L F E Q N D L - C S S Y S S F I S C I G C . . . . . . : 13643 GCTTTCAGTGCGGCAAGGTTTCAAATTGGTGATCATCGTCATTCAATTTGC : TGATGATAA A F S A A R F Q I G D H R H S I C : - - - L S V R Q G F K L V I I V I Q F A : D D K C F Q C G K V S N W - S S S F N L : L M I . . . . . . 13510 ATTAGAGTCACAAGAGTTTCGGGCAAGTTTGCCAACACCGAAGGATATCACCATCGATAT I R V T R V S G K F A N T E G Y H H R Y L E S Q E F R A S L P T P K D I T I D M N - S H K S F G Q V C Q H R R I S P S I . . . . . . 13450 GATGCGACAATTAGAATTAAATTTTAAAGGAGAAAAAAGATATTTTAGATTACATAAGAG D A T I R I K F - R R K K I F - I T - E M R Q L E L N F K G E K R Y F R L H K R - C D N - N - I L K E K K D I L D Y I R . . . . . . 13390 AACTAATTGAAAAAAAACCCTTCCTAGAAGGTGGCTGCGTAAAATTAGTTACTCACCTAA N - L K K N P S - K V A A - N - L L T - T N - K K T L P R R W L R K I S Y S P N E L I E K K P F L E G G C V K L V T H L . . . . . . 13330 TTTTTTTAACAGATATTAGTTTTAAGTATTAAAACTTATTGAAACAGAACCCTTCCTAGA F F - Q I L V L S I K T Y - N R T L P R F F N R Y - F - V L K L I E T E P F L E I F L T D I S F K Y - N L L K Q N P S - . . . . . . 13270 AGGTGGCTGCGTAGATTAGTTACTCCACTAATATTTGTTAATTGTAAATTCTAA R W L R R L V T P L I F V N C K F - G G C V D - L L H - Y L L I V N S K V A A - I S Y S T N I C - L - I L Maximal non-overlapping open reading frames (>= 64 codons): >C06HBa0046G10.1-1-_PGL-1_AGS-1_PPS_1 (14378 14064) (frame '1'; 312 bp, 104 residues) 1 KTHTNVFNVH NADPLDRICD EDWEETKDLL QFLRLFYDAT IMFSGIYYPT ILSVLINICA 61 LTIQFSKYKK IDKFKVAIEG MIEKLKKYFF LIPQIYLTAT LLSS- >C06HBa0046G10.1-1-_PGL-1_AGS-1_PPS_2 (14011 13700) (frame '2'; 309 bp, 103 residues) 1 EILPKEIPNC ETCKSSIKVE AKILYKKYRT SENIEGEVGQ TSNQDIDFEV RISTYMRGFL 61 CLNSTNRDDL EEYINQSLEV FEIKDGNEDL LGCVVGEPLH FQL- >C06HBa0046G10.1-1-_PGL-1_AGS-1_PPS_3 (13675 13593,13519 13381) (frame '2'; 219 bp, 73 residues) 1 LFKLHQLHWM LLSVRQGFKL VIIVIQFADD KLESQEFRAS LPTPKDITID MMRQLELNFK 61 GEKRYFRLHK RTN- AGS-2 (16172 14672) SCR (e 0.877) Exon 1 16172 14672 (1501 n); score: 0.877 PGS (16172 14672) SGN-U322096+ 3-phase translation of AGS-2 (-strand): . . . . . . 16172 AATTCTCATATTATTATAATCCATATATTTCAATTTTCAATTCTAAATTTTCATATTATT N S H I I I I H I F Q F S I L N F H I I I L I L L - S I Y F N F Q F - I F I L F F S Y Y Y N P Y I S I F N S K F S Y Y . . . . . . 16112 TTATATATATATATATATATATATATAAAATCTCATATTTGTTATCAAGTATTGGTTGGA L Y I Y I Y I Y I K S H I C Y Q V L V G Y I Y I Y I Y I - N L I F V I K Y W L E F I Y I Y I Y I Y K I S Y L L S S I G W . . . . . . 16052 GTTTCAAATTACAAGTTACAACAAATCATAAGCTTCAAGAATCGATTTAACGTCTGCTAT V S N Y K L Q Q I I S F K N R F N V C Y F Q I T S Y N K S - A S R I D L T S A I S F K L Q V T T N H K L Q E S I - R L L . . . . . . 15992 TAACGCAGACGTTTGGTACATTCGTTTCATAATATTTATATTTTATTTTTCGTCTTTATT - R R R L V H S F H N I Y I L F F V F I N A D V W Y I R F I I F I F Y F S S L F L T Q T F G T F V S - Y L Y F I F R L Y . . . . . . 15932 TTTTGTGTTATTATTATTTTTATATTACATTTTATATATAATTAAGTATGAGTTCTAGCA F C V I I I F I L H F I Y N - V - V L A F V L L L F L Y Y I L Y I I K Y E F - Q F L C Y Y Y F Y I T F Y I - L S M S S S . . . . . . 15872 AAAAAAAATATCGGTAAAGGAAAAGAAAAAGAACAAGATAACGAACAAAGTGGAATTTTT K K N I G K G K E K E Q D N E Q S G I F K K I S V K E K K K N K I T N K V E F L K K K Y R - R K R K R T R - R T K W N F . . . . . . 15812 AAAATATTTAATTTTAGTAAAAAAAATAATAAAGAAAAAAAGAGTAGTAAAAGTGGTGGT K I F N F S K K N N K E K K S S K S G G K Y L I L V K K I I K K K R V V K V V V - N I - F - - K K - - R K K E - - K W W . . . . . . 15752 ACTTCATATAAATCAACGTGTAGAGTTAGATTTAACCCAAATGATTCTACTTATGTTGAT T S Y K S T C R V R F N P N D S T Y V D L H I N Q R V E L D L T Q M I L L M L I Y F I - I N V - S - I - P K - F Y L C - . . . . . . 15692 ACTCCTTATGATATTAATTCAAATGTTCAACTCGATCATCAAAGTTTAGAACGAAGTTAT T P Y D I N S N V Q L D H Q S L E R S Y L L M I L I Q M F N S I I K V - N E V M Y S L - Y - F K C S T R S S K F R T K L . . . . . . 15632 GGTAATATTAATCCTAATGTTGATGAAAATTCAGGTGAAGAAGTAGAAGCTGATTTGTGA G N I N P N V D E N S G E E V E A D L - V I L I L M L M K I Q V K K - K L I C E W - Y - S - C - - K F R - R S R S - F V . . . . . . 15572 GAAAAGGATTTAGAAGATACACCTACTAGTCCGGTGACAGAAGTTCCAAATGACACTATA E K D L E D T P T S P V T E V P N D T I K R I - K I H L L V R - Q K F Q M T L - R K G F R R Y T Y - S G D R S S K - H Y . . . . . . 15512 AATTCGACGGAGCAAAATTGTGGACGTCCACTCCTTATACCTCTCACAAGGGAGAAGGTG N S T E Q N C G R P L L I P L T R E K V I R R S K I V D V H S L Y L S Q G R R - K F D G A K L W T S T P Y T S H K G E G . . . . . . 15452 AAGTATCAACGCCCTAAAACTTATATTGTGTGGCAATTTATGACTTTCGATAAAGAAAAT K Y Q R P K T Y I V W Q F M T F D K E N S I N A L K L I L C G N L - L S I K K I E V S T P - N L Y C V A I Y D F R - R K . . . . . . 15392 AGTGTTGCTATTTTGTAATAAGTGTAAGCAACCTTTTAAACATAAACAAGGTGGGGGTCA S V A I L - - V - A T F - T - T R W G S V L L F C N K C K Q P F K H K Q G G G Q - C C Y F V I S V S N L L N I N K V G V . . . . . . 15332 AGGTGGGACGGGGGATTAAATAGACATTTGTTATCTTGTGTGCCGATTCAATATAAAGAA R W D G G L N R H L L S C V P I Q Y K E G G T G D - I D I C Y L V C R F N I K K K V G R G I K - T F V I L C A D S I - R . . . . . . 15272 GCTAAAGCATTAGCCAATAGAAAAAAAGGAATTTCAATTGATGAATTTGATATTACCGGT A K A L A N R K K G I S I D E F D I T G L K H - P I E K K E F Q L M N L I L P V S - S I S Q - K K R N F N - - I - Y Y R . . . . . . 15212 AGTGCATCGGTAGGGGCTTCTCACATAGTTCAAGGAACATTAGATCTTTCTAGCCCCGGT S A S V G A S H I V Q G T L D L S S P G V H R - G L L T - F K E H - I F L A P V - C I G R G F S H S S R N I R S F - P R . . . . . . 15152 GGTCCAATAACACAACGTAAATATAATAAGGAATTTGATCGCGAAAATTTAGCTAAAATG G P I T Q R K Y N K E F D R E N L A K M V Q - H N V N I I R N L I A K I - L K W W S N N T T - I - - G I - S R K F S - N . . . . . . 15092 GTTTCTGTTTGTAGTTTGCCTTATAGTTTTACTTCATATCCCGATTTTATTGAATAAATT V S V C S L P Y S F T S Y P D F I E - I F L F V V C L I V L L H I P I L L N K F G F C L - F A L - F Y F I S R F Y - I N . . . . . . 15032 TAACAAACTTATAATCCGAATTATAGAGGTTTTCAAGAAATACTGTTAAACATGATGTTT - Q T Y N P N Y R G F Q E I L L N M M F N K L I I R I I E V F K K Y C - T - C F L T N L - S E L - R F S R N T V K H D V . . . . . . 14972 TTGAATTTCAAGGTAAACATTGTTAATTTCTTCGTTGTATATTTAGCATATTATATAGTA L N F K V N I V N F F V V Y L A Y Y I V - I S R - T L L I S S L Y I - H I I - - F E F Q G K H C - F L R C I F S I L Y S . . . . . . 14912 GAGTGTCTATAACTACGGATATGGGTCGTAGTGTCAATGGAAATGATTATTTAACTGTTT E C L - L R I W V V V S M E M I I - L F S V Y N Y G Y G S - C Q W K - L F N C F R V S I T T D M G R S V N G N D Y L T V . . . . . . 14852 CAACTCATTGGATTGATCATAATTGGAATTTGCAAAAAAGAATATTAAGTTATACACTAT Q L I G L I I I G I C K K E Y - V I H Y N S L D - S - L E F A K K N I K L Y T M S T H W I D H N W N L Q K R I L S Y T L . . . . . . 14792 GTGTAGAGAAAAAACTGGTGCATACTTAGCTTCAAAAATTTTAAGTGTTTTAGATTATTA V - R K N W C I L S F K N F K C F R L L C R E K T G A Y L A S K I L S V L D Y Y C V E K K L V H T - L Q K F - V F - I I . . . . . . 14732 CATGGTTACAGATAAAGTAATGTCTGTTGCATTAGATAATGCATCTAACAATACAAACGC H G Y R - S N V C C I R - C I - Q Y K R M V T D K V M S V A L D N A S N N T N A T W L Q I K - C L L H - I M H L T I Q T . 14672 T Maximal non-overlapping open reading frames (>= 64 codons): >C06HBa0046G10.1-1-_PGL-1_AGS-2_PPS_1 (15347 15036) (frame '1'; 309 bp, 103 residues) 1 TRWGSRWDGG LNRHLLSCVP IQYKEAKALA NRKKGISIDE FDITGSASVG ASHIVQGTLD 61 LSSPGGPITQ RKYNKEFDRE NLAKMVSVCS LPYSFTSYPD FIE- >C06HBa0046G10.1-1-_PGL-1_AGS-2_PPS_2 (15881 15573) (frame '1'; 306 bp, 102 residues) 1 VLAKKNIGKG KEKEQDNEQS GIFKIFNFSK KNNKEKKSSK SGGTSYKSTC RVRFNPNDST 61 YVDTPYDINS NVQLDHQSLE RSYGNINPNV DENSGEEVEA DL- >C06HBa0046G10.1-1-_PGL-1_AGS-2_PPS_3 (15572 15375) (frame '1'; 195 bp, 65 residues) 1 EKDLEDTPTS PVTEVPNDTI NSTEQNCGRP LLIPLTREKV KYQRPKTYIV WQFMTFDKEN 61 SVAIL- 3-phase translation of AGS-2 (+strand): . . . . . . 14672 AGCGTTTGTATTGTTAGATGCATTATCTAATGCAACAGACATTACTTTATCTGTAACCAT S V C I V R C I I - C N R H Y F I C N H A F V L L D A L S N A T D I T L S V T M R L Y C - M H Y L M Q Q T L L Y L - P . . . . . . 14732 GTAATAATCTAAAACACTTAAAATTTTTGAAGCTAAGTATGCACCAGTTTTTTCTCTACA V I I - N T - N F - S - V C T S F F S T - - S K T L K I F E A K Y A P V F S L H C N N L K H L K F L K L S M H Q F F L Y . . . . . . 14792 CATAGTGTATAACTTAATATTCTTTTTTGCAAATTCCAATTATGATCAATCCAATGAGTT H S V - L N I L F C K F Q L - S I Q - V I V Y N L I F F F A N S N Y D Q S N E L T - C I T - Y S F L Q I P I M I N P M S . . . . . . 14852 GAAACAGTTAAATAATCATTTCCATTGACACTACGACCCATATCCGTAGTTATAGACACT E T V K - S F P L T L R P I S V V I D T K Q L N N H F H - H Y D P Y P - L - T L - N S - I I I S I D T T T H I R S Y R H . . . . . . 14912 CTACTATATAATATGCTAAATATACAACGAAGAAATTAACAATGTTTACCTTGAAATTCA L L Y N M L N I Q R R N - Q C L P - N S Y Y I I C - I Y N E E I N N V Y L E I Q S T I - Y A K Y T T K K L T M F T L K F . . . . . . 14972 AAAACATCATGTTTAACAGTATTTCTTGAAAACCTCTATAATTCGGATTATAAGTTTGTT K T S C L T V F L E N L Y N S D Y K F V K H H V - Q Y F L K T S I I R I I S L L K N I M F N S I S - K P L - F G L - V C . . . . . . 15032 AAATTTATTCAATAAAATCGGGATATGAAGTAAAACTATAAGGCAAACTACAAACAGAAA K F I Q - N R D M K - N Y K A N Y K Q K N L F N K I G I - S K T I R Q T T N R N - I Y S I K S G Y E V K L - G K L Q T E . . . . . . 15092 CCATTTTAGCTAAATTTTCGCGATCAAATTCCTTATTATATTTACGTTGTGTTATTGGAC P F - L N F R D Q I P Y Y I Y V V L L D H F S - I F A I K F L I I F T L C Y W T T I L A K F S R S N S L L Y L R C V I G . . . . . . 15152 CACCGGGGCTAGAAAGATCTAATGTTCCTTGAACTATGTGAGAAGCCCCTACCGATGCAC H R G - K D L M F L E L C E K P L P M H T G A R K I - C S L N Y V R S P Y R C T P P G L E R S N V P - T M - E A P T D A . . . . . . 15212 TACCGGTAATATCAAATTCATCAATTGAAATTCCTTTTTTTCTATTGGCTAATGCTTTAG Y R - Y Q I H Q L K F L F F Y W L M L - T G N I K F I N - N S F F S I G - C F S L P V I S N S S I E I P F F L L A N A L . . . . . . 15272 CTTCTTTATATTGAATCGGCACACAAGATAACAAATGTCTATTTAATCCCCCGTCCCACC L L Y I E S A H K I T N V Y L I P R P T F F I L N R H T R - Q M S I - S P V P P A S L Y - I G T Q D N K C L F N P P S H . . . . . . 15332 TTGACCCCCACCTTGTTTATGTTTAAAAGGTTGCTTACACTTATTACAAAATAGCAACAC L T P T L F M F K R L L T L I T K - Q H - P P P C L C L K G C L H L L Q N S N T L D P H L V Y V - K V A Y T Y Y K I A T . . . . . . 15392 TATTTTCTTTATCGAAAGTCATAAATTGCCACACAATATAAGTTTTAGGGCGTTGATACT Y F L Y R K S - I A T Q Y K F - G V D T I F F I E S H K L P H N I S F R A L I L L F S L S K V I N C H T I - V L G R - Y . . . . . . 15452 TCACCTTCTCCCTTGTGAGAGGTATAAGGAGTGGACGTCCACAATTTTGCTCCGTCGAAT S P S P L - E V - G V D V H N F A P S N H L L P C E R Y K E W T S T I L L R R I F T F S L V R G I R S G R P Q F C S V E . . . . . . 15512 TTATAGTGTCATTTGGAACTTCTGTCACCGGACTAGTAGGTGTATCTTCTAAATCCTTTT L - C H L E L L S P D - - V Y L L N P F Y S V I W N F C H R T S R C I F - I L F F I V S F G T S V T G L V G V S S K S F . . . . . . 15572 CTCACAAATCAGCTTCTACTTCTTCACCTGAATTTTCATCAACATTAGGATTAATATTAC L T N Q L L L L H L N F H Q H - D - Y Y S Q I S F Y F F T - I F I N I R I N I T S H K S A S T S S P E F S S T L G L I L . . . . . . 15632 CATAACTTCGTTCTAAACTTTGATGATCGAGTTGAACATTTGAATTAATATCATAAGGAG H N F V L N F D D R V E H L N - Y H K E I T S F - T L M I E L N I - I N I I R S P - L R S K L - - S S - T F E L I S - G . . . . . . 15692 TATCAACATAAGTAGAATCATTTGGGTTAAATCTAACTCTACACGTTGATTTATATGAAG Y Q H K - N H L G - I - L Y T L I Y M K I N I S R I I W V K S N S T R - F I - S V S T - V E S F G L N L T L H V D L Y E . . . . . . 15752 TACCACCACTTTTACTACTCTTTTTTTCTTTATTATTTTTTTTACTAAAATTAAATATTT Y H H F Y Y S F F L Y Y F F Y - N - I F T T T F T T L F F F I I F F T K I K Y F V P P L L L L F F S L L F F L L K L N I . . . . . . 15812 TAAAAATTCCACTTTGTTCGTTATCTTGTTCTTTTTCTTTTCCTTTACCGATATTTTTTT - K F H F V R Y L V L F L F L Y R Y F F K N S T L F V I L F F F F S F T D I F F L K I P L C S L S C S F S F P L P I F F . . . . . . 15872 TTGCTAGAACTCATACTTAATTATATATAAAATGTAATATAAAAATAATAATAACACAAA L L E L I L N Y I - N V I - K - - - H K C - N S Y L I I Y K M - Y K N N N N T K F A R T H T - L Y I K C N I K I I I T Q . . . . . . 15932 AAATAAAGACGAAAAATAAAATATAAATATTATGAAACGAATGTACCAAACGTCTGCGTT K - R R K I K Y K Y Y E T N V P N V C V N K D E K - N I N I M K R M Y Q T S A L K I K T K N K I - I L - N E C T K R L R . . . . . . 15992 AATAGCAGACGTTAAATCGATTCTTGAAGCTTATGATTTGTTGTAACTTGTAATTTGAAA N S R R - I D S - S L - F V V T C N L K I A D V K S I L E A Y D L L - L V I - N - - Q T L N R F L K L M I C C N L - F E . . . . . . 16052 CTCCAACCAATACTTGATAACAAATATGAGATTTTATATATATATATATATATATATATA L Q P I L D N K Y E I L Y I Y I Y I Y I S N Q Y L I T N M R F Y I Y I Y I Y I - T P T N T - - Q I - D F I Y I Y I Y I Y . . . . . . 16112 AAATAATATGAAAATTTAGAATTGAAAATTGAAATATATGGATTATAATAATATGAGAAT K - Y E N L E L K I E I Y G L - - Y E N N N M K I - N - K L K Y M D Y N N M R I K I I - K F R I E N - N I W I I I I - E . 16172 T Maximal non-overlapping open reading frames (>= 64 codons): >C06HBa0046G10.1-1+_PGL-1_AGS-2_PPS_1 (15336 15563) (frame '2'; 225 bp, 75 residues) 1 PPPCLCLKGC LHLLQNSNTI FFIESHKLPH NISFRALILH LLPCERYKEW TSTILLRRIY 61 SVIWNFCHRT SRCIF- PGL 2 (- strand): 17604 17110 AGS-1 (17604 17541,17347 17308,17265 17110) SCR (e 0.836 d 0.000 a 0.000,e 0.975 d 0.000 a 0.000,e 0.853) Exon 1 17604 17541 ( 64 n); score: 0.836 Intron 1 17540 17348 ( 193 n); Pd: 0.000 Pa: 0.000 Exon 2 17347 17308 ( 40 n); score: 0.975 Intron 2 17307 17266 ( 42 n); Pd: 0.000 Pa: 0.000 Exon 3 17265 17110 ( 156 n); score: 0.853 PGS (17604 17541,17347 17308,17265 17110) SGN-U341005- PGS (17290 17165) SGN-U314322+ 3-phase translation of AGS-1 (-strand): . . . . . . 17604 TATGTTAAAGAATGGCAAAAGTCCCACATCGATGGTTAATGAGATGGGTAACTCCTTATA Y V K E W Q K S H I D G - - D G - L L I M L K N G K S P T S M V N E M G N S L - C - R M A K V P H R W L M R W V T P Y . : . . . . : . 17544 AGGC : TTGAGCTAGCTTTTGGGGTGTGAGTTAGGCCTAAGACCTA : GGAACCCCAAAATCAA R : L E L A F G V - V R P K T - : E P Q N Q G : L S - L L G C E L G L R P : R N P K I K K A : - A S F W G V S - A - D L : G T P K S . . . . . . 17249 AATTGTCCACGCACCAGATGCTAAGCACTGGGCGTGATGTGGGGTGTTAAAGAATGACAA N C P R T R C - A L G V M W G V K E - Q I V H A P D A K H W A - C G V L K N D K K L S T H Q M L S T G R D V G C - R M T . . . . . . 17189 AAGTCTCACATCGGTGGTTAATGAGATGGGTGGAAAACTTATAAGGCTTGGGCAATCTCC K S H I G G - - D G W K T Y K A W A I S S L T S V V N E M G G K L I R L G Q S P K V S H R W L M R W V E N L - G L G N L . . 17129 TCCCTTTGAGTTAGCTTTTG S L - V S F P F E L A F L P L S - L L Maximal non-overlapping open reading frames (>= 64 codons): none ... finished at: Mon Jul 24 23:33:58 2006 ________________________________________________________________________________ Sequence 2: C06HBa0046G10.1-2, from 1 to 6980, both strands analyzed. ... started at: Mon Jul 24 23:33:58 2006 EST library file: /tmp/cxgn-bacpublish-resources-3cdDhp/lycopersicum_combined_unigene_seqs; matching gDNA +strand ... ... found all matches, elapsed seconds = 2 ... matches indexed, elapsed seconds = 2 HitsTableSize = 1 EST library file: /tmp/cxgn-bacpublish-resources-3cdDhp/lycopersicum_combined_unigene_seqs; matching gDNA -strand ... ... found all matches, elapsed seconds = 2 ... matches indexed, elapsed seconds = 2 HitsTableSize = 0 ******************************************************************************** EST sequence 1 +strand 710 n (File: SGN-U331547+) 1 AAAAGCTCAC TTGTTCTTCT AGGGTTTCAC AAGATCTCTT TTGCCTCTGC AAAACACGAG 61 CGAATTGCGA TTTCTAGGGT TACGATTTGT GTTTGTTCGG GTGTTTGATG GTCCGAGGAG 121 TGATTTGAGG GTATAAATCT TGATTTTTTC TGGAAGATTT TGAAGAGAGA AAGGAAACGA 181 TGGCGCCTTT TGACAAAGAG CTTGAAGAGC AGATTGCTGT TGCTGGGAAC AAGCTGATTG 241 AGCCTCCTTC TTCACTTGAA GAACTCCTCC GTTTGCTTGA CCAAGTAGAG TCTTCCCTGT 301 CTAAAGTGGA GCAGTCACCA GCGAAATCAA TGCATGATGC ACTTTCTCCA TTGATGAAGG 361 CATTGGTTGC AAATGATCTC TTGAGGCATT CTGATGTTGA TGTGAAGGTC GCAGTTGCTT 421 CGTGTATTAG TGAGATAACT ACAATTACTG CACCAGACGC TCCATATGAT GACGACAAAA 481 TGAAGGATAT CTTTCAATTA ATTGTGTCGT CTTTTGAGAA TCTGGATGAC CAGTCTAGCA 541 GATCTTATAA TAAGAGGGTG ATGATCCTTG AGACAGTGGC CAAGGTCAGG TCATGTGTTG 601 TCATGCTGGA TCTAGAATGT GATGGGCTCA TCGCTGAGAT GTTTCACCAC TTCCTTACAG 661 CTATCAGAGA GGATCACTCT GAAAATGTTT TTTCATCCAT GGCAACAATC Predicted gene structure (within gDNA segment 545 to 6980): Exon 1 1145 1425 ( 281 n); cDNA 1 281 ( 281 n); score: 1.000 Intron 1 1426 4782 (3357 n); Pd: 0.996 (s: 1.00), Pa: 0.863 (s: 1.00) Exon 2 4783 4986 ( 204 n); cDNA 282 485 ( 204 n); score: 0.995 Intron 2 4987 5059 ( 73 n); Pd: 0.999 (s: 0.98), Pa: 0.932 (s: 1.00) Exon 3 5060 5241 ( 182 n); cDNA 486 667 ( 182 n); score: 0.984 Intron 3 5242 6340 (1099 n); Pd: 0.999 (s: 0.94), Pa: 0.995 (s: 1.00) Exon 4 6341 6383 ( 43 n); cDNA 668 710 ( 43 n); score: 1.000 MATCH C06HBa0046G10.1-2+ SGN-U331547+ 0.994 710 1.000 C PGS_C06HBa0046G10.1-2+_SGN-U331547+ (1145 1425,4783 4986,5060 5241,6341 6383) Alignment (genomic DNA sequence = upper lines): AAAAGCTCAC TTGTTCTTCT AGGGTTTCAC AAGATCTCTT TTGCCTCTGC AAAACACGAG 1204 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAAGCTCAC TTGTTCTTCT AGGGTTTCAC AAGATCTCTT TTGCCTCTGC AAAACACGAG 60 CGAATTGCGA TTTCTAGGGT TACGATTTGT GTTTGTTCGG GTGTTTGATG GTCCGAGGAG 1264 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGAATTGCGA TTTCTAGGGT TACGATTTGT GTTTGTTCGG GTGTTTGATG GTCCGAGGAG 120 TGATTTGAGG GTATAAATCT TGATTTTTTC TGGAAGATTT TGAAGAGAGA AAGGAAACGA 1324 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGATTTGAGG GTATAAATCT TGATTTTTTC TGGAAGATTT TGAAGAGAGA AAGGAAACGA 180 TGGCGCCTTT TGACAAAGAG CTTGAAGAGC AGATTGCTGT TGCTGGGAAC AAGCTGATTG 1384 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGCGCCTTT TGACAAAGAG CTTGAAGAGC AGATTGCTGT TGCTGGGAAC AAGCTGATTG 240 AGCCTCCTTC TTCACTTGAA GAACTCCTCC GTTTGCTTGA CGTAAGCTTT TTTGTTTATT 1444 |||||||||| |||||||||| |||||||||| |||||||||| | AGCCTCCTTC TTCACTTGAA GAACTCCTCC GTTTGCTTGA C......... .......... 281 TTGGTTGTGA ATTCTGTTTT TGTATAATCG GTATGATATT TTTTTTAGAT TTTTATGTTT 1504 .......... .......... .......... .......... .......... .......... 281 AGGTTTTTTT TTTGTTATCT TGAACTATTT CATACCATTT TTGGGCTACT TCGAATTGTT 1564 .......... .......... .......... .......... .......... .......... 281 TTAGATGTTT GTTTAAGTAA TTCTCGGGTT GAGTTTCTGC TTTTGTATGA TGCTCCGCTT 1624 .......... .......... .......... .......... .......... .......... 281 TACTTTAGAG CTAATTAGGG CTAGATTCAA AGAATAAAAC TTGGAAGCCT ACAAAATAAT 1684 .......... .......... .......... .......... .......... .......... 281 TGAACTATGT GTTGACTCCA GGGCATTGAA CCTGAGCATC CCACATCTGG GAGATATGTG 1744 .......... .......... .......... .......... .......... .......... 281 TACACCCTTG ACTGGTGACC TCTGCTCTAG GTTTTGTCAA AGGGTGTTCA AAATTCTATA 1804 .......... .......... .......... .......... .......... .......... 281 TATACAAATA AAAACTAGTA TTTAAGGCTA ATGATGTTCG GCTGATTACC CTAGTACCGC 1864 .......... .......... .......... .......... .......... .......... 281 CGCAGCTGTG CCCTTGTTGA TTACCCTAGC ACCGCCATAG CTATGCCCTT ATTGATTACC 1924 .......... .......... .......... .......... .......... .......... 281 CTAGCACTGC TGTAGCTCTG CCCTTGTTGA TTACCCTAGC ACCGCCGTAG CTATGCCCTT 1984 .......... .......... .......... .......... .......... .......... 281 GTTGATTACC CTAGCACCGC TGTAGCTCTG CCCTTGTTGA TTACCCTAGA TCTGCCCTTG 2044 .......... .......... .......... .......... .......... .......... 281 TTGAACACTG TTATCAACTT CTAATTTATT TTGATAAGGA AGTAAACATT ATAAACTATC 2104 .......... .......... .......... .......... .......... .......... 281 TTTTGGTTGA AAGCTTAACT TTTATTCAGC CAGTATGGAA ATAGTACACC AGTTAGCTAT 2164 .......... .......... .......... .......... .......... .......... 281 TCTAATTTCT CACTCTTTTA CAATCCTCAT TAAGCTAGCT ATTCTATCAG TTTCTACTCT 2224 .......... .......... .......... .......... .......... .......... 281 ACAATTCTAG CTATCTGTCT AATCTTTGAA GCCCCCCCCC CCCCCACCAC ACCACACCAC 2284 .......... .......... .......... .......... .......... .......... 281 ACACTTACAC TTGGTCTGGT GTTGTCCTTT TGTGTGAAGT TGGGGATGAT TCCTCTGGAT 2344 .......... .......... .......... .......... .......... .......... 281 CTATGCTTGC ATTCCTGCTG GTGTTGTTGA AATATTCTAG CATTCTGCTC AATCCAGACA 2404 .......... .......... .......... .......... .......... .......... 281 TGGTAAATGC ATGCATTGAA CAGCCAGCCT AGCATGTGTA ATTCTGCTTT CCTTTGTTTC 2464 .......... .......... .......... .......... .......... .......... 281 ACTCTGTGCG TCAACTATTG GATCTCAGCC TCCCAATTTT AGTGATTCAA AATATGATTT 2524 .......... .......... .......... .......... .......... .......... 281 AAAAAAGCCC TTCTTGATTG GTAACAGCCT TACCAATATC TTCACAAGTT AGTGGTAGGT 2584 .......... .......... .......... .......... .......... .......... 281 CTACAGACAC ACCACCCTCC CTAGACCCAA CTTGTGGGAT TACAGTGGTA ATGTTGTTGT 2644 .......... .......... .......... .......... .......... .......... 281 CGTTTCTCTT TCTTGTGATG TATACGATGT TATCCCCCAG GACAGTATTT TGATTCTTAC 2704 .......... .......... .......... .......... .......... .......... 281 TCTATATAGA GCCCTTGAAT ACTGTTATTA GCTTTTGATT TGTTTTGATA GTGAGGTAGA 2764 .......... .......... .......... .......... .......... .......... 281 AACTGACTTC TTTTAATTAT TCTAAATATG ATTAAAAATC TTTCTTTATT TGTTATCCTC 2824 .......... .......... .......... .......... .......... .......... 281 CACCCTGGAT GATTGCCATA TGTTCCCTCT CCTCTTGTTT GATGCAAGTC CTTTACTATT 2884 .......... .......... .......... .......... .......... .......... 281 CTTCAAATTT AATTCTTAAT GGCCTACCCG CTGTTTCAGT TTGCATTGAG TTGAATTATC 2944 .......... .......... .......... .......... .......... .......... 281 CTGCTTAATG AAAGTATTGC TTTTAAAATT CATGCTTTTC CTAATGTTTC TTTTAAATTT 3004 .......... .......... .......... .......... .......... .......... 281 ATTTTGATAT TTGTTGTCTC TGCCTATTTG GAAATATTTT GGCATGTCTT TTTTATAAGT 3064 .......... .......... .......... .......... .......... .......... 281 AATTTCTGTA TTCTGGTAAT TTTTCATTTT TTCCTGTTAA CTGGTGGTCT CTGTTTAGAG 3124 .......... .......... .......... .......... .......... .......... 281 TCTGGTTTAA ACTATCTTGA AGCATTATGG TTTGCAATTG ATGGGCATTG CCACTAGGGC 3184 .......... .......... .......... .......... .......... .......... 281 CACTCTTTTT TCATGACTCC CCTGTGGGAT GTGGAATATT ACTGGGTATG TTGTTGCATG 3244 .......... .......... .......... .......... .......... .......... 281 TGATGTATAC ATTAGTCGCA ACTTTTTGTT TGGGTCCTAG AGTTTTGTGG TTTGCTAGTG 3304 .......... .......... .......... .......... .......... .......... 281 AGACATATGA GCATGTCCAT AGTTAAATAA TTTGAACAGG ATGTAGTCTG TGTAATCTTG 3364 .......... .......... .......... .......... .......... .......... 281 ACATCTCCTG GCGGAGCTTT TTATTTTTGA TAATTGTTTC AAATGATGGT ATCTGAAAAT 3424 .......... .......... .......... .......... .......... .......... 281 TCCAGAGAGA TAATTGGGTT GGCGGGTAAT AAGTACACCA TTCTTTTTAT TTGATAAGTG 3484 .......... .......... .......... .......... .......... .......... 281 CCTGACAATT TGTAGGAAAG GGAAAATGAA AAAAATGGAA GAAGTAGTAT ATACTCTTGG 3544 .......... .......... .......... .......... .......... .......... 281 AATCTCTGGG TATTAAATAA CAGTCAATAT TTATGCTGAA AGATAGCAAG GCTGTGGGCA 3604 .......... .......... .......... .......... .......... .......... 281 TGCTGTGTGT TTCCCCTGTG AGGCTCTTCT AGTTGTACTT GAAAATCCCG TTGGCTTTTC 3664 .......... .......... .......... .......... .......... .......... 281 CTGGAGGGTT TCTCAAGGAG CAGAGTATGG GCAATATTAG TTTTCTTTCT GAAGTGGTGA 3724 .......... .......... .......... .......... .......... .......... 281 TTTTCTTATG CAAATGGTTT ATTGATTTAA CCCCCCATCT TAATTGAGAA GCCACAATGA 3784 .......... .......... .......... .......... .......... .......... 281 AATAAGTTTC CTTTTGTGGG TGTCTTCCCC TAGTCAAAGT TAAAATGCAT AGATTTGTGT 3844 .......... .......... .......... .......... .......... .......... 281 TTAACAATCT CATAAATTAA TTGTCATTTT ACTTTTTAGA GAAAATCTGA CTGTGCATCT 3904 .......... .......... .......... .......... .......... .......... 281 TCGTATTGCT GGTTAAAGAA CGATAAACAG TGACAGATAC TAATTTGGAA CCATGAGTTT 3964 .......... .......... .......... .......... .......... .......... 281 CCTGGTATTT CCTTGATAAC AAGCTGATGC AGACCACCTG TTTTTGGTGA TAAAATTGAT 4024 .......... .......... .......... .......... .......... .......... 281 ACTTTATGAA TACGTCCTTT AGATTATTGT TTAGAAGATT TGGTTTGTGT GATTTTATGC 4084 .......... .......... .......... .......... .......... .......... 281 TGCCATAATT CTTTTGGGAA AATACAAAAA CCTTTAGCCT GTATGGATAA AATTGGGGCC 4144 .......... .......... .......... .......... .......... .......... 281 AGCTGATTGT CATCACTTAA TCGATGTGCG AGACTCTGAG GTACCTTAAC ATGATCTGTA 4204 .......... .......... .......... .......... .......... .......... 281 GTAAAAAGGA TCAAGTTGAC TGTTATTCCC CTTTTTCTAA TCAATGTGCG AGACTCTGAG 4264 .......... .......... .......... .......... .......... .......... 281 GTACCTTAAC ATGATCTGTA GTAAAAAGGA TCAAGTTGGC TGTTATTCCC CTTTTTCTTT 4324 .......... .......... .......... .......... .......... .......... 281 AAAGTGGGTC ATTGACTTCT AGATAGGAGA TCTTTTTTCT TCTATAAATT TGTTTGGAAT 4384 .......... .......... .......... .......... .......... .......... 281 TTAACCCTGC AGTAGTATGG TTGGTTACAT GGAGAAAAGG AAAAGCTAGA GTTTTTGAAC 4444 .......... .......... .......... .......... .......... .......... 281 TTAAGGAAGG ACAGTGTAAT TAACCATGGG TCGGAGTTTA TATTCTTGCT TAGTTTTAGT 4504 .......... .......... .......... .......... .......... .......... 281 GGTGGAGACT TGGTTGACTT AGCAGGTCCT TTACACTTGC TGACTTTTTT TTTTGATGTA 4564 .......... .......... .......... .......... .......... .......... 281 CTCTTTTCCC ATCATTGCAG ATATTTCATA CATTACCCAT ATATCAATAG ATACTGTTGG 4624 .......... .......... .......... .......... .......... .......... 281 TATAACAAAA CAGAAGTTAT TTTGAACCGT TTGTTTTGGC AGATTTTTGG TTTCACTGTT 4684 .......... .......... .......... .......... .......... .......... 281 AATTTTGCAA TTAACATATA ATGTTTCATT TGCTGAAACT CATGCACGGT CTTTTTCTTG 4744 .......... .......... .......... .......... .......... .......... 281 CCTAATCTTA ATATACTTTT GGTTTTTTCT GCTTTAAGCA AGTAGAGTCT TCCCTGTCTA 4804 || |||||||||| |||||||||| .......... .......... .......... ........CA AGTAGAGTCT TCCCTGTCTA 303 AAGTGGAGCA GTCACCAGCG AAATCAATGC ATGATGCACT TTCTCCATTG ATGAAGGCAT 4864 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGTGGAGCA GTCACCAGCG AAATCAATGC ATGATGCACT TTCTCCATTG ATGAAGGCAT 363 TGGTTGCAAA TGATCTCTTG AGGCATTCTG ATGTTGATGT GAAGGTCGCA GTTGCTTCGT 4924 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGTTGCAAA TGATCTCTTG AGGCATTCTG ATGTTGATGT GAAGGTCGCA GTTGCTTCGT 423 GTATTAGTGA GATAACTAGA ATTACTGCAC CAGACGCTCC ATATGATGAC GACAAAATGA 4984 |||||||||| |||||||| | |||||||||| |||||||||| |||||||||| |||||||||| GTATTAGTGA GATAACTACA ATTACTGCAC CAGACGCTCC ATATGATGAC GACAAAATGA 483 AGGTATGAGA AATCTGCTTT CTCATTCTCC TTCCTTCTAT CAGTCCTTCA ATAACATTCC 5044 || AG........ .......... .......... .......... .......... .......... 485 ATTTATTTGA TACAGGATAT CTTTCAATTA ATTGTGTCGT CTTTTGAGAA TCTGGATGAC 5104 ||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... .....GATAT CTTTCAATTA ATTGTGTCGT CTTTTGAGAA TCTGGATGAC 530 CAGTCTAGCA GATCTTATAA TAAGAGGGTG ATGATCCTTG AGACAGTGGC CAAGGTCAGG 5164 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAGTCTAGCA GATCTTATAA TAAGAGGGTG ATGATCCTTG AGACAGTGGC CAAGGTCAGG 590 TCATGTGTTG TCATGCTGGA TCTAGAATGT GATGGGCTCA TCGCTGAGAT GTTTCAGCAC 5224 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||| ||| TCATGTGTTG TCATGCTGGA TCTAGAATGT GATGGGCTCA TCGCTGAGAT GTTTCACCAC 650 TTCCTTAAAG CTATAAGGTA TTACCAATAT ATTGCTTCAA CAGTTGTATT GTTTCTATAA 5284 ||||||| || |||| || TTCCTTACAG CTATCAG... .......... .......... .......... .......... 667 TGTTTGGTTT CAGATTTCTT TATCAAAATG TGTTTGGTTA AAGATTTCTT GTATGTCATG 5344 .......... .......... .......... .......... .......... .......... 667 TTTCTTTAAT CCCAACCTGG ATTTTTTTTG ATAAGGACTA ACTTGGATTG TTCTTTTAGA 5404 .......... .......... .......... .......... .......... .......... 667 CATGACCATG GTTTTAGAGA ATATATCTGA AGTAAATAAT ACCTCACATT CCATTGAAAC 5464 .......... .......... .......... .......... .......... .......... 667 GTGATTAGAT TTATGTGATT GTGAGCTTCT CATGTCTGGT TGTGTTTTTT AGTGGAGCTT 5524 .......... .......... .......... .......... .......... .......... 667 CTAGTTAAGA AGTTTTCTTT CCAACCACGT GAAACATAAT TTACAAGCTA GGCGCTACTT 5584 .......... .......... .......... .......... .......... .......... 667 TCAAGTTCTT GAATTTGCAT GGATCTGAGT ATCTGAGCAG GGTTACTTGT TCTGTTTTTT 5644 .......... .......... .......... .......... .......... .......... 667 TTATATCCAA TTTGCTAAAC CTTCAGGAGT AAATTGAAAT GATTACTCCT AGCTCTTAAA 5704 .......... .......... .......... .......... .......... .......... 667 AGATATTTTT TACTGATATG TTATATGTCC GAATTACAGC ATTGTTTGAA GATGTTCAGT 5764 .......... .......... .......... .......... .......... .......... 667 TGGTAATTCA CCAGCATGAA AAATTCTCAA AATAATTTGG GTTGAAAGTT TCCCCTGTGG 5824 .......... .......... .......... .......... .......... .......... 667 GTATTTCTCT CATTTTATTG TTGAAACAAC ATGAACTTCT GGGAACAACA GATTTGTTGA 5884 .......... .......... .......... .......... .......... .......... 667 ACATGTTTTT CTTTTCCTCT AGAAAATATT TAGAAGCTTA TCCAAAAGTT CGTTACGCGC 5944 .......... .......... .......... .......... .......... .......... 667 CCTTGGTAGC TATATATAAA ACAGTAGCAA GTTGGAAGGT TTTGCACCTA AATATATTGA 6004 .......... .......... .......... .......... .......... .......... 667 AACTTGAATG GATGTCATGT TTTTTCTTCC AACAGTGTAC ATCAACTTAG GAAAACTTAC 6064 .......... .......... .......... .......... .......... .......... 667 CCCTCTGTAA ATACATTCAT AACCATGTTT GCTCTACTGC TCACTTTTAT ATTGATAGTG 6124 .......... .......... .......... .......... .......... .......... 667 GACTAGTTAA AATTACTTGC TGCACTGGTT TAACTGGATG ATGCTTGATT AAAATCTGTC 6184 .......... .......... .......... .......... .......... .......... 667 AAATAGATGG GTAATGTTTA TTATGCAATA CTTTGGTGTA TGTTCTCTAC CACATGTAAG 6244 .......... .......... .......... .......... .......... .......... 667 GCTCTTGATT TTTCTTATTA TTTTGTATGC TAATTCCTAT CGAACATTTT ATTTTGTAAT 6304 .......... .......... .......... .......... .......... .......... 667 AGTTTGTGTT GTTTATTCGT TGACTTTCAC TTTCAGAGAG GATCACTCTG AAAATGTTTT 6364 |||| |||||||||| |||||||||| .......... .......... .......... ......AGAG GATCACTCTG AAAATGTTTT 691 TTCATCCATG GCAACAATC 6383 |||||||||| ||||||||| TTCATCCATG GCAACAATC 710 hqPGS_C06HBa0046G10.1-2+_SGN-U331547+ (1145 1425,4783 4986,5060 5241,6341 6383) Total number of EST alignments reported: 1 ________________________________________________________________________________ Predicted gene locations (1) in segment 1 to 6980: PGL 1 (+ strand): 1145 6383 AGS-1 (1145 1425,4783 4986,5060 5241,6341 6383) SCR (e 1.000 d 0.996 a 0.863,e 0.995 d 0.999 a 0.932,e 0.984 d 0.999 a 0.995,e 1.000) Exon 1 1145 1425 ( 281 n); score: 1.000 Intron 1 1426 4782 (3357 n); Pd: 0.996 Pa: 0.863 Exon 2 4783 4986 ( 204 n); score: 0.995 Intron 2 4987 5059 ( 73 n); Pd: 0.999 Pa: 0.932 Exon 3 5060 5241 ( 182 n); score: 0.984 Intron 3 5242 6340 (1099 n); Pd: 0.999 Pa: 0.995 Exon 4 6341 6383 ( 43 n); score: 1.000 PGS (1145 1425,4783 4986,5060 5241,6341 6383) SGN-U331547+ 3-phase translation of AGS-1 (+strand): . . . . . . 1145 AAAAGCTCACTTGTTCTTCTAGGGTTTCACAAGATCTCTTTTGCCTCTGCAAAACACGAG K S S L V L L G F H K I S F A S A K H E K A H L F F - G F T R S L L P L Q N T S K L T C S S R V S Q D L F C L C K T R . . . . . . 1205 CGAATTGCGATTTCTAGGGTTACGATTTGTGTTTGTTCGGGTGTTTGATGGTCCGAGGAG R I A I S R V T I C V C S G V - W S E E E L R F L G L R F V F V R V F D G P R S A N C D F - G Y D L C L F G C L M V R G . . . . . . 1265 TGATTTGAGGGTATAAATCTTGATTTTTTCTGGAAGATTTTGAAGAGAGAAAGGAAACGA - F E G I N L D F F W K I L K R E R K R D L R V - I L I F S G R F - R E K G N D V I - G Y K S - F F L E D F E E R K E T . . . . . . 1325 TGGCGCCTTTTGACAAAGAGCTTGAAGAGCAGATTGCTGTTGCTGGGAACAAGCTGATTG W R L L T K S L K S R L L L L G T S - L G A F - Q R A - R A D C C C W E Q A D - M A P F D K E L E E Q I A V A G N K L I . . . . . : . 1385 AGCCTCCTTCTTCACTTGAAGAACTCCTCCGTTTGCTTGAC : CAAGTAGAGTCTTCCCTGT S L L L H L K N S S V C L T : K - S L P C A S F F T - R T P P F A - : P S R V F P V E P P S S L E E L L R L L D : Q V E S S L . . . . . . 4802 CTAAAGTGGAGCAGTCACCAGCGAAATCAATGCATGATGCACTTTCTCCATTGATGAAGG L K W S S H Q R N Q C M M H F L H - - R - S G A V T S E I N A - C T F S I D E G S K V E Q S P A K S M H D A L S P L M K . . . . . . 4862 CATTGGTTGCAAATGATCTCTTGAGGCATTCTGATGTTGATGTGAAGGTCGCAGTTGCTT H W L Q M I S - G I L M L M - R S Q L L I G C K - S L E A F - C - C E G R S C F A L V A N D L L R H S D V D V K V A V A . . . . . . 4922 CGTGTATTAGTGAGATAACTAGAATTACTGCACCAGACGCTCCATATGATGACGACAAAA R V L V R - L E L L H Q T L H M M T T K V Y - - D N - N Y C T R R S I - - R Q N S C I S E I T R I T A P D A P Y D D D K . : . . . . . 4982 TGAAG : GATATCTTTCAATTAATTGTGTCGTCTTTTGAGAATCTGGATGACCAGTCTAGCA - R : I S F N - L C R L L R I W M T S L A E : G Y L S I N C V V F - E S G - P V - Q M K : D I F Q L I V S S F E N L D D Q S S . . . . . . 5115 GATCTTATAATAAGAGGGTGATGATCCTTGAGACAGTGGCCAAGGTCAGGTCATGTGTTG D L I I R G - - S L R Q W P R S G H V L I L - - E G D D P - D S G Q G Q V M C C R S Y N K R V M I L E T V A K V R S C V . . . . . . 5175 TCATGCTGGATCTAGAATGTGATGGGCTCATCGCTGAGATGTTTCAGCACTTCCTTAAAG S C W I - N V M G S S L R C F S T S L K H A G S R M - W A H R - D V S A L P - S V M L D L E C D G L I A E M F Q H F L K . : . . . . 5235 CTATAAG : AGAGGATCACTCTGAAAATGTTTTTTCATCCATGGCAACAATC L - : E R I T L K M F F H P W Q Q Y K : R G S L - K C F F I H G N N A I R : E D H S E N V F S S M A T I Maximal non-overlapping open reading frames (>= 64 codons): >C06HBa0046G10.1-2+_PGL-1_AGS-1_PPS_1 (1288 1425,4783 4986,5060 5241,6341 6383) (frame '0'; 567 bp, 189 residues) 1 FFLEDFEERK ETMAPFDKEL EEQIAVAGNK LIEPPSSLEE LLRLLDQVES SLSKVEQSPA 61 KSMHDALSPL MKALVANDLL RHSDVDVKVA VASCISEITR ITAPDAPYDD DKMKDIFQLI 121 VSSFENLDDQ SSRSYNKRVM ILETVAKVRS CVVMLDLECD GLIAEMFQHF LKAIREDHSE 181 NVFSSMATI ... finished at: Mon Jul 24 23:34:03 2006 ________________________________________________________________________________ Sequence 3: C06HBa0046G10.1-3, from 1 to 7638, both strands analyzed. ... started at: Mon Jul 24 23:34:03 2006 EST library file: /tmp/cxgn-bacpublish-resources-3cdDhp/lycopersicum_combined_unigene_seqs; matching gDNA +strand ... ... found all matches, elapsed seconds = 1 ... matches indexed, elapsed seconds = 1 HitsTableSize = 2 EST library file: /tmp/cxgn-bacpublish-resources-3cdDhp/lycopersicum_combined_unigene_seqs; matching gDNA -strand ... ... found all matches, elapsed seconds = 1 ... matches indexed, elapsed seconds = 2 HitsTableSize = 3 ******************************************************************************** EST sequence 5 -strand 924 n (File: SGN-U344810-) 1 CCCAGTGAAT GTAATTCGAC TCCTTATAGG GCGAAATNGG TACCGGGCCC CCCCCTTTTT 61 TTTTTTTTTT TTGGAGCCTG ATTAATATTT GATGTACTAT TTATTCTCTG TACCAAAAAA 121 TACTCTGATT TATCAATATA TATACCCCAC ACACCCCGTG AAAGTTTCCT CACGGGGTGT 181 TGCCACAAAA TATTGGTTTC TCTTTTTNCT CTCTAGATCT CTCATCTCTT TCTCTTGAAA 241 GTTTTTGTGT TCTTCATTCA TCAAGTTTGT GTGTGATTCG ATCCTAACAT CAAGTGTCAA 301 AACTCTCTTC ATGTAAGAAA GAAAAAAATG AAAACATGAA CTTCCCCAAT ATTTTAGCAC 361 AATTGGTAGA GGAAAGGCAC AAAACTACAC TGAGAAAATA ACAGGTGCAT GATTAGTGTA 421 CACTGTCGAT CGATCGATAA AAACACAAGT TAATCGTTTA AAGATCCTCT GGATGAATGC 481 CAAGAACCAT TGAGGCTATT GAACAGGCAA GTACCTGTCT CGTTGTTTGG CATTTGGAGA 541 TGTACTCTAG ATCTTAACTG TGATGTTCTG AGCTGTAAAA GTACTAACTC CGATCATCAG 601 TCAGATCAAC GTCCCTATTA CTTTGTAACG ATGTCTGGCT CAAATACCTA CTGTGAATCG 661 ACAAATACCT CCAATTCCAG TAAAGAATCA TATGTTTTCT TCTCGCGTGT GTCGAACACT 721 GTAATGCCTG TGATTTTCTG TACCCCATGC TTCACAGCAA TCAGATTCAA CTCTAATTCT 781 GAAGAGCTAA ATGCTTCCAC CTGTGCCAAA TGCATTGTTA GAAGACCATT AACCATGATA 841 GCCTTCTCAT CAAGTGAGTC ACCCTGCAGC CCGGGGGATC CACTAGTTCT AGAGCGGCCG 901 CCACCGCGGG GAGCTCCAGC TTTT Predicted gene structure (within gDNA segment 193 to 7638): Exon 1 1749 1960 ( 212 n); cDNA 84 291 ( 208 n); score: 0.828 Intron 1 1961 4956 (2996 n); Pd: 0.000 (s: 0.84), Pa: 0.889 (s: 0) Exon 2 4957 4961 ( 5 n); cDNA 292 296 ( 5 n); score: 1.000 MATCH C06HBa0046G10.1-3+ SGN-U344810- 0.828 217 0.235 C PGS_C06HBa0046G10.1-3+_SGN-U344810- (1749 1960,4957 4961) Alignment (genomic DNA sequence = upper lines): AATTTTAGAC TTTCCTATTT ATTCTCTGTA ACCAAAAATA CTCTGATTTA TTAATATAAA 1808 ||| || || | | |||||| |||||||||| | ||||||| |||||||||| | |||||| | AATATTTGA- TGTACTATTT ATTCTCTGTA CCAAAAAATA CTCTGATTTA TCAATATATA 142 TATACCTCAC -CGTCGTGGA AGTTTACTCA CGGGGTGTTA CCACGAAATA TTGGGTTTTC 1867 || || ||| | |||| | ||||| |||| ||||||||| |||| ||||| |||| || || TACCCCACAC ACCCCGTGAA AGTTTCCTCA CGGGGTGTTG CCACAAAATA TTGGTTTCTC 202 TCTTTCTCTA TCTAGATATC TCATCTCTTT CTCTTGAAAG TTCTGGTGTT CTTCATTCAT 1927 | ||| || ||||||| || |||||||||| |||||||||| || | ||||| |||||||||| T-TTTTNCTC TCTAGATCTC TCATCTCTTT CTCTTGAAAG TTTTTGTGTT CTTCATTCAT 261 CAAGTGTGTA TGCGTGAATT CGATCCCAAC ATAATTAATA CCTATATAAT CAATATTTGC 1987 ||||| | | || ||| ||| |||||| ||| || CAAGT-T-TG TGTGTG-ATT CGATCCTAAC ATC....... .......... .......... 291 ATAACTAATA CCTTAATAAC TAATACTTGC ATAACCAATA CCTACATAAC TAATACATGT 2047 .......... .......... .......... .......... .......... .......... 291 ATAATTAATA CCTATATAAC TAATGTCTGC ATAACTCTAA CTAATAACCA AACAATCCCT 2107 .......... .......... .......... .......... .......... .......... 291 AAGTAAAAAT CTTATTCCTT TTAATTTCTT TTTGTGTTGC ACTTGAATAG TTTTTTTTTT 2167 .......... .......... .......... .......... .......... .......... 291 TTATCTTAGT TATTACTGTT TCTGTTTTAT GAGTGATATG TAAAGTACAA TATTATTTTA 2227 .......... .......... .......... .......... .......... .......... 291 TCGCATCAAA TTGTTGGATA AGACAATATT AAATTCGTTT TATATGCATT TTCATATTAG 2287 .......... .......... .......... .......... .......... .......... 291 TTCAACTGAA AATTGTATTG TTAATTGATA GAAATTGATA AACTAAAAAA ATATAAAAGA 2347 .......... .......... .......... .......... .......... .......... 291 ACTATCATAT TGATTTGATT ATTGGTTTTG CGTATTTATA TATTAAAAAC TAATAAATCG 2407 .......... .......... .......... .......... .......... .......... 291 AGCCGATAAT ACATAAAACG AACTAGCCAA TGCACACCTC CAATTCTGAG TAATACAAGT 2467 .......... .......... .......... .......... .......... .......... 291 TTCACATATA TAATTTTTTA TTAATATAAT TCAGTTTTGC AATTTGTGTT GCTCAAAAGA 2527 .......... .......... .......... .......... .......... .......... 291 AAATATGATT AGAAGATGAA TATATGCTAT GGAGTTTATC GATTTTTTAA TAGTGTCAAA 2587 .......... .......... .......... .......... .......... .......... 291 GAGGGATCGA TGGGCAAAGC AAAGCTTCAA CATGTTTAAT TTTGCCACGG AAACAAACAA 2647 .......... .......... .......... .......... .......... .......... 291 CCTCGTTTAA TTAAGTTTTT TTTTTTAATT AGAATCTACT TAAACATACA ATGTATTTTT 2707 .......... .......... .......... .......... .......... .......... 291 AGTATAAATA TATGATTAAA TAAAAGTTAT TTGAGTTTTT GAGAACTGGT ATGAAACATT 2767 .......... .......... .......... .......... .......... .......... 291 CTAAATTCAT CCTTAAATGT GTTTAGTCTT CACTGAAATC AACTTTAGAT CCTAATAAAA 2827 .......... .......... .......... .......... .......... .......... 291 TTGAAAACAT TTGAAGATTT CTAGATATTT GGATATATTC TTCAAGATTG CAAAAAAAAA 2887 .......... .......... .......... .......... .......... .......... 291 AAAAGTTATC AAGTTTTTGG AAAAGATAAA TAAAATTATT TGAAATCGAT TAATGGATGA 2947 .......... .......... .......... .......... .......... .......... 291 TATGATATTT CTATCAACTT ACCTCTTATT TTTTAACTTA AAATCTACAA TATTCATTAA 3007 .......... .......... .......... .......... .......... .......... 291 TAAATGATGT CATTAATTTT TTAATTTGCG TATATATTAG ATATCATGAG ATTTCAAATA 3067 .......... .......... .......... .......... .......... .......... 291 ATTTTAATTG AAACAAAGTG AAAGCAAGAT TAAGGGGAGC TAAAATAAGA TAAGTTGTGA 3127 .......... .......... .......... .......... .......... .......... 291 GGAGATACAC TTTGCGATCA TAAAGTAGAC GTATGTGGTT GAGAAAGTCA GCATGACCAA 3187 .......... .......... .......... .......... .......... .......... 291 CAATATGTTA AAATGTGAAG CTTTGTATCC AAGCCTGACT TAGTCAAAAG ATATCACTCA 3247 .......... .......... .......... .......... .......... .......... 291 CGTAACATAT TGCAACTTTA CTTTCAAAGT TCAAATTGTT TGTTGTAAGA AGAATATGAG 3307 .......... .......... .......... .......... .......... .......... 291 TCGGGTGATT CCTACTTGCA ATCATGTTTT AAGGTCACTT ATCAAGTGTA ACAAGGGTAT 3367 .......... .......... .......... .......... .......... .......... 291 AAAAAAGTAA TTTAGAGTCA TAAGGGACCT CTAACACTAA GTCAAGTTTA AAGTCTTTTG 3427 .......... .......... .......... .......... .......... .......... 291 CCGACTAAAT TTTGTACTAT CATGCAAGAG TTAATTTCAA ACAATCATAT ATTCTAGTAT 3487 .......... .......... .......... .......... .......... .......... 291 ACAAAGAACT CCATAGCCCT TAAAGTAATT TAGAGTCATA AGGAACCTCT AACACCAAGC 3547 .......... .......... .......... .......... .......... .......... 291 GAATTTTTCA TTAGTATCGT TATTTTTGAA GTGACTGTGT TCTCCATGCG GCCCATAACA 3607 .......... .......... .......... .......... .......... .......... 291 TGGGGGCACT ATGCTTAACC AATTTTTCAG TAGCCTCACT ATTTTTCGAA GTGGATCTGC 3667 .......... .......... .......... .......... .......... .......... 291 TCTCTATGTG ACCCGTAGCG TGGACGCACG TGCCAAGCAA ATTTTTGAAT AACTCTGCTA 3727 .......... .......... .......... .......... .......... .......... 291 TTTTTAAATG GTTGTGCGTT GCGCTTAGCA TATAGTGTGT GCGTACCGCT CCAAGTCAAG 3787 .......... .......... .......... .......... .......... .......... 291 GGTCTAGATA TTAAGATTCT CTATTCATTA AGTTAAGTCA ATGTATCGCT ATAAAGTTTA 3847 .......... .......... .......... .......... .......... .......... 291 TCTTAGACGA CCTATGATTT ATTTTTATCT CAAATTATCT CCTTTCCTTC AAGTCCGACT 3907 .......... .......... .......... .......... .......... .......... 291 CCAAGACATG TTTCTTATAT CTAGCTTAAA TCTAAACAAT TTCGATCTCT AAGCACGAAT 3967 .......... .......... .......... .......... .......... .......... 291 TCTTAACAAG ATTTTAACAT CAAATCTCTC TCATATCTAA TGAAAATAAG AATTCATCCT 4027 .......... .......... .......... .......... .......... .......... 291 ACAGTTCAAA AAAGGGACTT ACAGAGTTCC TATTTGAAGT TAGAGTTTCA GTTAGAGTGG 4087 .......... .......... .......... .......... .......... .......... 291 TTCAAAATAA ATAAAGCTAC TCATTATGAT GGACTACGTT CTTCCTCAAA ATTTTACCGA 4147 .......... .......... .......... .......... .......... .......... 291 ATTTTTCATG AATTTCAAAT TGATCTTTAT TCCTTGTTGT TGAATTCCAA TTCTTATCAT 4207 .......... .......... .......... .......... .......... .......... 291 TGAGATTATA GAACTTCATT TTCATTCTTA AATTGTTGTC ATGCTTATGG CATCACATGA 4267 .......... .......... .......... .......... .......... .......... 291 ACCCTATTTA GTTGAGAATT GTTGAAAGTT TTTGCATAAT TACTATCGTG CGCTAACTTT 4327 .......... .......... .......... .......... .......... .......... 291 TTATTTAAAG TAAGTTTAAG TGTTTTAAGT TATCATTGAG AAGAGTTTTT TAGAGAATAC 4387 .......... .......... .......... .......... .......... .......... 291 TAATGATTCG AAATTCACTA TTTTGTATTA AGAAATATTG TTAATTATAG AAAAGTATAA 4447 .......... .......... .......... .......... .......... .......... 291 TTAATTTCAA GAGAAGTTTC AATCAGTAAA GCAAGATCAG TTATTCCTCA AAAGGATTTT 4507 .......... .......... .......... .......... .......... .......... 291 TTTAGTATTG ATTCAATCTA GTAAGTATTA CCATATGAGA ATTAATATGT ATGTTTGGAG 4567 .......... .......... .......... .......... .......... .......... 291 TAGTATTGAA CATCATTTTG GATAAAAGTT AAGATAACTT GAACCCCATT AATTACATTG 4627 .......... .......... .......... .......... .......... .......... 291 TCAGCGTAGA TAGGATCATA TCGAAATCTG AGTGAAAGTT CACGTGCCTC ATTAAAGCTT 4687 .......... .......... .......... .......... .......... .......... 291 TTAGTGGATT CATAAGTTAG GTTGTGTTAT ATATTCCGAC AAGGAAAAAT TTTATTTTGA 4747 .......... .......... .......... .......... .......... .......... 291 GCGAGGTACA ACCAACAATA GTTGTACGAG GGTCCATTCA TTTTTAACAC GTGAATATGT 4807 .......... .......... .......... .......... .......... .......... 291 GGGGTCAATT TGTTCTTTAA AGTCCGCCAA AGAAATAAGA GGAGAGAGAA TATAAATTTT 4867 .......... .......... .......... .......... .......... .......... 291 AATTGAAAAT TAAAAAGAAA ACGTGGGATC CATGCCATTT TCAATATATA TATATATAAT 4927 .......... .......... .......... .......... .......... .......... 291 TAATTAATTA CATTTTTCGT ACAAAAAAGA AGTG 4961 | |||| .......... .......... .........A AGTG 296 hqPGS_C06HBa0046G10.1-3+_SGN-U344810- (1749 1960) ******************************************************************************** EST sequence 3 +strand 737 n (File: SGN-U313613+) 1 CATAAACATG CTTAATTAGT TCTTGTTCAT CCATTTTCTT GTTTATTTGA GCCAATAATT 61 AATCAAATCA CAATTTACTA TGGAGGAAAT TTCTGAAGGA ATTCGAGCAA CTTCGTTAAG 121 GATCAATGAT TGTCCATCAC CATTACCATC CGCTATTGCT TCGTCTGCTA CTCCTCAAAA 181 ACACTTAAAA TGCTTTATCA GCGTACATTT CGTGCAAAAG GTATTTAAAT TCACAAAATT 241 CATCTTAATG ATTAAATTTG AGTCTCGAAT TTTCAAGTGT CAGATGAGCA GGTTGAGTCA 301 ATTTCGACGA GTTTTAGTTA TATAGATGGT GATGTTTGAG CTCAAACCAA AATGGAATCA 361 TTCAAGATTT TGGATCCATG AACCATTGTC TGATGATATG AATTGTATAA TTACATCATT 421 TATGTTGGAT TTTATTTTGT CCTAAATTTC TTATCATAAA TAGGTTTTTC TTTTAGGAAA 481 AAAGTTTTGA ATTGACTAAT TCTTTTTCTG GTAGGAAAAT GTTCCCGTGT ATTCTTAGTG 541 AATTGGTTGA GGTTGTTTCT CTCTGTATTT TGTACTCTCA TATTAATAGT GGATTGCTCA 601 TCTCCATTGT GGACGTAGGT CGATTGACCG AACCACGTTA AATCTTTGTG TCTTTTGGTA 661 TATTTCTCGT TGTCTTTCAT ACTCGTGGTC TTTTGAGGTT TGCTTTGCTA GCTTTCCGCG 721 TTTACCCTGC TTATTTC Predicted gene structure (within gDNA segment 7638 to 3792): Exon 1 6988 6973 ( 16 n); cDNA 336 351 ( 16 n); score: 0.812 Intron 1 6972 5928 (1045 n); Pd: 0.000 (s: 0), Pa: 0.904 (s: 0.54) Exon 2 5927 5860 ( 68 n); cDNA 352 417 ( 66 n); score: 0.574 Intron 2 5859 5431 ( 429 n); Pd: 0.000 (s: 0.62), Pa: 0.000 (s: 0.85) Exon 3 5430 5329 ( 102 n); cDNA 418 522 ( 105 n); score: 0.828 Intron 3 5328 5193 ( 136 n); Pd: 0.000 (s: 0.87), Pa: 0.000 (s: 0.90) Exon 4 5192 4979 ( 214 n); cDNA 523 737 ( 215 n); score: 0.893 MATCH C06HBa0046G10.1-3- SGN-U313613+ 0.819 400 0.543 C PGS_C06HBa0046G10.1-3-_SGN-U313613+ (6988 6973,5927 5860,5430 5329,5192 4979) Alignment (genomic DNA sequence = upper lines): TTGAGATCAA AGTAAATAAA GGGTCTTATG ATTAACTAAC TGCTTTTAAA CATTAAAGAA 6929 ||||| |||| | ||| TTGAGCTCAA ACCAAA.... .......... .......... .......... .......... 351 CAAGAATTAT TAAAATAGCG ATGGGTTAAT CATGTTTTAT TAATAGATAT AAAAATATAA 6869 .......... .......... .......... .......... .......... .......... 351 GATATTAATC AAAAATTTTA TTTTAATTTA TTTTTTTAAA TAAAATATTC AAATAAAAAA 6809 .......... .......... .......... .......... .......... .......... 351 AATCAAGTAA TACTCGATAC AAAAAAAAAT TGAAAATTTG AATAAATAAG TGAAAAGATC 6749 .......... .......... .......... .......... .......... .......... 351 TTATTAAATT GCTTATGAAT ACTCAATCAC CAATAATATG GAATGTACAT TTCTCCCTTC 6689 .......... .......... .......... .......... .......... .......... 351 ACCCCAACCC CCACCGCCGA GTTCTCATCT TAATTTTTAA CATGTTTAAA TGGCTTAATG 6629 .......... .......... .......... .......... .......... .......... 351 TCAAATTTCA TTGCAAGACC TGTTATATAT ATATATAAAA AAAAAAATTA AAGGGATAAG 6569 .......... .......... .......... .......... .......... .......... 351 GTCTGGAAAA TATTCTAATT TTGATCAAAT TTATTGTTGC GATACTAAAC TCTCATGATA 6509 .......... .......... .......... .......... .......... .......... 351 AAAGGATCTA TTACCTCTCT AAACTATTTA ATACAGTAAT TTAAACATAT GTTTTTGCTC 6449 .......... .......... .......... .......... .......... .......... 351 ATGTAGATAT AAAAAATAAT GCAAAATTAT AACTAGTGAT GTATCCACGT GGGCACATAT 6389 .......... .......... .......... .......... .......... .......... 351 ATACTTTTAA AATACACTAT CAAATAGTTC AGGGGATAAA AAATACACTA TTAAATAGTT 6329 .......... .......... .......... .......... .......... .......... 351 CATAGAGGTA ATAGGTCCTC ACGAAAGTTT AGAATCGCAA CAACAAATTC GATCAAAGTT 6269 .......... .......... .......... .......... .......... .......... 351 AGGGTGTTTT TCAGACCCAT GTCCCTAAAT TAAAATAACT ATAACATAAT AAATGTAATC 6209 .......... .......... .......... .......... .......... .......... 351 TTACTGGTAA AGTCTCGAGA AGGTAGGATG TATGTGGACC ATATAGAGTA AGAATAAAAC 6149 .......... .......... .......... .......... .......... .......... 351 AATGAAAAAA ATATACTATA AAGTTAGAAT AATAGAACTT GACTCAAAAC TTTTAAGGAG 6089 .......... .......... .......... .......... .......... .......... 351 TCGTTTAGTA GAGTGTATAA AAATAAGGCG GAACTCATCG GTATCCCCCT TAATTCGACA 6029 .......... .......... .......... .......... .......... .......... 351 CCAATTTTCA CTTTGACGTT TTAACTAAAC TTTGTTCATT TTAGACACCT CATATCATAT 5969 .......... .......... .......... .......... .......... .......... 351 CCTGCTATGT CATTTTGACA CTTTTTGTTG ACATGTCATA GAGAGTGTAA TACACTCACT 5909 | | | | | || | | .......... .......... .......... .......... .ATGGAATCA TTCAAG-ATT 369 ACGGACGCGT GAAAGACTTG TTAAATCATT TTTATTTTAT TTTTTCATCT TCTTTCTCAT 5849 ||| | | ||| | ||| | || || | ||| ||| || |||| TTGGATCCAT GAACCA-TTG TCTGATGATA TGAATTGTAT AATTACATC. .......... 417 TTTCGAGTCA TTGTCTTCCA AAACTTAAAC TCTTTTTATG GAGAAATAAA TTTGACAATG 5789 .......... .......... .......... .......... .......... .......... 417 TTTCAGATAA AAAAATGAAT TTGAACCCAT TAGACTTATA ATATAATGAT ATAATAAAAA 5729 .......... .......... .......... .......... .......... .......... 417 TGACAAAAAG ACAATATGAA AATCCCTGCT ACAATAATTT AAAAGAAAAA TAAAAAATCA 5669 .......... .......... .......... .......... .......... .......... 417 CAAATTCATA AATAATCTCA AATTAGATTT GAGTGGGGTA TGTGTGGGTG TGTTGTTCTA 5609 .......... .......... .......... .......... .......... .......... 417 CTCGAGAAGA TGATGTTGGG GTTAGAGTGC GTAAGGCGGA GAAGACGTTG GGTGAGTGGG 5549 .......... .......... .......... .......... .......... .......... 417 GAAAGAGTGG AGAAAACACA AGAGTTGGGG TGGGTGGTGT GAAGAAGATG ATTTGGTGGG 5489 .......... .......... .......... .......... .......... .......... 417 GTTGGGTTAT TTTATTTTAA AAAAAAATTT GGGCGAAAAT TTCACATGTT ATTCACTTAT 5429 || .......... .......... .......... .......... .......... ........AT 419 TGGTGTTGAG TTTTAT-TTG CCCTAAATTT CTTATCATAA ATAGGTTTCT -TTTTAGGAA 5371 | ||||| |||||| ||| ||||||||| |||||||||| |||||||| | ||||||||| TTATGTTGGA TTTTATTTTG TCCTAAATTT CTTATCATAA ATAGGTTTTT CTTTTAGGAA 479 AAAA-TTTTG GATTGACTAA ATCATTTTCT TGTAGGAAAA TGTTTAGAAT TCTATAAATA 5312 |||| ||||| ||||||||| || |||||| ||||||||| ||| AAAAGTTTTG AATTGACTAA TTCTTTTTCT GGTAGGAAAA TGT....... .......... 522 GAGGAATGTT CCTTCTAACT TAACCAGCAT TCACAATGTA GTCTTAATGG CTTTGAGAGT 5252 .......... .......... .......... .......... .......... .......... 522 TTTGGTTAGG GGGAGAATTT ATGGGTCACA AGCTTGATAC GTTATCACTT GTGTGAACCT 5192 | .......... .......... .......... .......... .......... .........T 523 CCCATGTATT CTGAGTGAAT TAGTTGAGGT TGTTTCCTTC TGTATTTTGT ACTCTCATAT 5132 ||| |||||| || ||||||| | |||||||| |||||| || |||||||||| |||||||||| CCCGTGTATT CTTAGTGAAT TGGTTGAGGT TGTTTCTCTC TGTATTTTGT ACTCTCATAT 583 TTATAATGGA TTGCTCATCT CCTTTGTGGA CGTAGGTCGA TTGACCGAAC CACGTTAAAT 5072 | ||| |||| |||||||||| || ||||||| |||||||||| |||||||||| |||||||||| TAATAGTGGA TTGCTCATCT CCATTGTGGA CGTAGGTCGA TTGACCGAAC CACGTTAAAT 643 CTTTGTGTTT TTTGGTATAT TTCTCGTTGT -TTTTTTACT CGTGATCTTT CGAGATTTAT 5013 |||||||| | |||||||||| |||||||||| ||| |||| |||| ||||| ||| ||| CTTTGTGTCT TTTGGTATAT TTCTCGTTGT CTTTCATACT CGTGGTCTTT TGAGGTTTGC 703 TTTGCTAGC- TTCCGCATTT ACACCTGCTT ATTTC 4979 ||||||||| |||||| ||| || ||||||| ||||| TTTGCTAGCT TTCCGCGTTT AC-CCTGCTT ATTTC 737 hqPGS_C06HBa0046G10.1-3-_SGN-U313613+ (5430 5329,5192 4979) ******************************************************************************** EST sequence 2 -strand 965 n (File: SGN-U334483-) 1 CCCCCTTGAG TTTTTTTTTT TTTTTTTGAG GGCAATACTT ATAGGAGGTA AAATTATAAT 61 TTTAATTCAT GGTCCATTAA ATCATTAGGT TCACACAATA ATCACCAATT TTTGAATGCA 121 AGTTATTTTA GAGGACACTA ATAAAGTGAG AGACAATTTT GAGGCCTTCG ATATCTCTCG 181 AGGGTTTATT TTGCCTTGAT TCAATAAATA GACGAATTTA TAGGTCACNA GCTAGATATG 241 TTATCACTTA TGTGAACCTC CCATATATTC CGAATGAATT GGTTGATGTT GTTTCTCTCT 301 GTATATTGTA CTCTCATATT TATAGTGGAT TGCTCATCTC CTTTGTGAAC GTAGGTCGAT 361 TGACCGAACC ACGTTAAATC TTTGGTGTCT TTTGGTATAT TTCTCGTTGT CTTCTTACTC 421 GTGGTCTTTC GAAGTTTGCT TTGCTAGCTT CCGCATTTAC ACCTGCTTAT TTCGATCCTA 481 ACAAGTGGGT ATTAGAGCCA TTTAATGACA GAGGTCAGGT TCAGTGGTTC GATAATCGAT 541 TATTGGACCA GGTTAGAAAG AGGGTGGTGG TTCATCTTGA CAGGTGGTAG GTTCTAGCCG 601 CAATCTTTTT GACAGTAATG AAGATTTTGT TGGAGAAATT GTTTCAGAGA GGTTTTCTAT 661 GGTTGAGACA TAAATTTTAC AAAGGAGATT AAGAAGAAGA GAAGCAAGTT GTTGAAGATT 721 AAATGAAGAA TGTGGAGAAA TTTATTTTGG TCAGAAATAC AGGCCAAGGG GGAGGAGATT 781 TGTTGGATTT TATTTACCAT AATTTCTTAA CATAAATAGG TTTTCCTTTT AGGGAAAAAT 841 TTTGGATTGA CTAATCCCGG TGCCGAATTC CTGCAGCCGG GGGGATCCAC TAGTTCTAGA 901 GCAGCCGGCC CGGCGTATTC TCCCGTTCTT CTTCTTTNAA AAAGCCCCCC CTCCCCCNNN 961 NNNNN Predicted gene structure (within gDNA segment 7638 to 1): Exon 1 6976 6967 ( 10 n); cDNA 205 214 ( 10 n); score: 0.800 Intron 1 6966 5237 (1730 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.90) Exon 2 5236 4964 ( 273 n); cDNA 215 487 ( 273 n); score: 0.896 Intron 2 4963 3544 (1420 n); Pd: 0.454 (s: 0.92), Pa: 0.000 (s: 0) Exon 3 3543 3534 ( 10 n); cDNA 488 497 ( 10 n); score: 0.900 PPA cDNA 27 10 MATCH C06HBa0046G10.1-3- SGN-U334483- 0.896 293 0.304 C PGS_C06HBa0046G10.1-3-_SGN-U334483- (6976 6967,5236 4964,3543 3534) Alignment (genomic DNA sequence = upper lines): TAAATAAAGG GTCTTATGAT TAACTAACTG CTTTTAAACA TTAAAGAACA AGAATTATTA 6917 |||||| | | TAAATAGACG .......... .......... .......... .......... .......... 214 AAATAGCGAT GGGTTAATCA TGTTTTATTA ATAGATATAA AAATATAAGA TATTAATCAA 6857 .......... .......... .......... .......... .......... .......... 214 AAATTTTATT TTAATTTATT TTTTTAAATA AAATATTCAA ATAAAAAAAA TCAAGTAATA 6797 .......... .......... .......... .......... .......... .......... 214 CTCGATACAA AAAAAAATTG AAAATTTGAA TAAATAAGTG AAAAGATCTT ATTAAATTGC 6737 .......... .......... .......... .......... .......... .......... 214 TTATGAATAC TCAATCACCA ATAATATGGA ATGTACATTT CTCCCTTCAC CCCAACCCCC 6677 .......... .......... .......... .......... .......... .......... 214 ACCGCCGAGT TCTCATCTTA ATTTTTAACA TGTTTAAATG GCTTAATGTC AAATTTCATT 6617 .......... .......... .......... .......... .......... .......... 214 GCAAGACCTG TTATATATAT ATATAAAAAA AAAAATTAAA GGGATAAGGT CTGGAAAATA 6557 .......... .......... .......... .......... .......... .......... 214 TTCTAATTTT GATCAAATTT ATTGTTGCGA TACTAAACTC TCATGATAAA AGGATCTATT 6497 .......... .......... .......... .......... .......... .......... 214 ACCTCTCTAA ACTATTTAAT ACAGTAATTT AAACATATGT TTTTGCTCAT GTAGATATAA 6437 .......... .......... .......... .......... .......... .......... 214 AAAATAATGC AAAATTATAA CTAGTGATGT ATCCACGTGG GCACATATAT ACTTTTAAAA 6377 .......... .......... .......... .......... .......... .......... 214 TACACTATCA AATAGTTCAG GGGATAAAAA ATACACTATT AAATAGTTCA TAGAGGTAAT 6317 .......... .......... .......... .......... .......... .......... 214 AGGTCCTCAC GAAAGTTTAG AATCGCAACA ACAAATTCGA TCAAAGTTAG GGTGTTTTTC 6257 .......... .......... .......... .......... .......... .......... 214 AGACCCATGT CCCTAAATTA AAATAACTAT AACATAATAA ATGTAATCTT ACTGGTAAAG 6197 .......... .......... .......... .......... .......... .......... 214 TCTCGAGAAG GTAGGATGTA TGTGGACCAT ATAGAGTAAG AATAAAACAA TGAAAAAAAT 6137 .......... .......... .......... .......... .......... .......... 214 ATACTATAAA GTTAGAATAA TAGAACTTGA CTCAAAACTT TTAAGGAGTC GTTTAGTAGA 6077 .......... .......... .......... .......... .......... .......... 214 GTGTATAAAA ATAAGGCGGA ACTCATCGGT ATCCCCCTTA ATTCGACACC AATTTTCACT 6017 .......... .......... .......... .......... .......... .......... 214 TTGACGTTTT AACTAAACTT TGTTCATTTT AGACACCTCA TATCATATCC TGCTATGTCA 5957 .......... .......... .......... .......... .......... .......... 214 TTTTGACACT TTTTGTTGAC ATGTCATAGA GAGTGTAATA CACTCACTAC GGACGCGTGA 5897 .......... .......... .......... .......... .......... .......... 214 AAGACTTGTT AAATCATTTT TATTTTATTT TTTCATCTTC TTTCTCATTT TCGAGTCATT 5837 .......... .......... .......... .......... .......... .......... 214 GTCTTCCAAA ACTTAAACTC TTTTTATGGA GAAATAAATT TGACAATGTT TCAGATAAAA 5777 .......... .......... .......... .......... .......... .......... 214 AAATGAATTT GAACCCATTA GACTTATAAT ATAATGATAT AATAAAAATG ACAAAAAGAC 5717 .......... .......... .......... .......... .......... .......... 214 AATATGAAAA TCCCTGCTAC AATAATTTAA AAGAAAAATA AAAAATCACA AATTCATAAA 5657 .......... .......... .......... .......... .......... .......... 214 TAATCTCAAA TTAGATTTGA GTGGGGTATG TGTGGGTGTG TTGTTCTACT CGAGAAGATG 5597 .......... .......... .......... .......... .......... .......... 214 ATGTTGGGGT TAGAGTGCGT AAGGCGGAGA AGACGTTGGG TGAGTGGGGA AAGAGTGGAG 5537 .......... .......... .......... .......... .......... .......... 214 AAAACACAAG AGTTGGGGTG GGTGGTGTGA AGAAGATGAT TTGGTGGGGT TGGGTTATTT 5477 .......... .......... .......... .......... .......... .......... 214 TATTTTAAAA AAAAATTTGG GCGAAAATTT CACATGTTAT TCACTTATTG GTGTTGAGTT 5417 .......... .......... .......... .......... .......... .......... 214 TTATTTGCCC TAAATTTCTT ATCATAAATA GGTTTCTTTT TAGGAAAAAA TTTTGGATTG 5357 .......... .......... .......... .......... .......... .......... 214 ACTAAATCAT TTTCTTGTAG GAAAATGTTT AGAATTCTAT AAATAGAGGA ATGTTCCTTC 5297 .......... .......... .......... .......... .......... .......... 214 TAACTTAACC AGCATTCACA ATGTAGTCTT AATGGCTTTG AGAGTTTTGG TTAGGGGGAG 5237 .......... .......... .......... .......... .......... .......... 214 AATTTATGGG TCACAAGCTT GATACGTTAT CACTTGTGTG AACCTCCCAT GTATTCTGAG 5177 ||||||| || |||| |||| |||| ||||| ||||| |||| |||||||||| ||||| || AATTTATAGG TCACNAGCTA GATATGTTAT CACTTATGTG AACCTCCCAT ATATTCCGAA 274 TGAATTAGTT GAGGTTGTTT CCTTCTGTAT TTTGTACTCT CATATTTATA ATGGATTGCT 5117 |||||| ||| || ||||||| | ||||||| ||||||||| |||||||||| ||||||||| TGAATTGGTT GATGTTGTTT CTCTCTGTAT ATTGTACTCT CATATTTATA GTGGATTGCT 334 CATCTCCTTT GTGGACGTAG GTCGATTGAC CGAACCACGT TAAATCTTT- GTGTTTTTTG 5058 |||||||||| ||| |||||| |||||||||| |||||||||| ||||||||| |||| ||||| CATCTCCTTT GTGAACGTAG GTCGATTGAC CGAACCACGT TAAATCTTTG GTGTCTTTTG 394 GTATATTTCT CGTTGTTTTT TTACTCGTGA TCTTTCGAGA TTTATTTTGC TAGCTTCCGC 4998 |||||||||| |||||| || ||||||||| |||||||| ||| ||||| |||||||||| GTATATTTCT CGTTGTCTTC TTACTCGTGG TCTTTCGAAG TTTGCTTTGC TAGCTTCCGC 454 ATTTACACCT GCTTATTTCC GGTCCTAACA ATTGGTCACT TCTTTTTTGT ACGAAAAATG 4938 |||||||||| |||||||| | | |||||||| | || ATTTACACCT GCTTATTT-C GATCCTAACA AGTG...... .......... .......... 487 TAATTAATTA ATTATATATA TATATATTGA AAATGGCATG GATCCCACGT TTTCTTTTTA 4878 .......... .......... .......... .......... .......... .......... 487 ATTTTCAATT AAAATTTATA TTCTCTCTCC TCTTATTTCT TTGGCGGACT TTAAAGAACA 4818 .......... .......... .......... .......... .......... .......... 487 AATTGACCCC ACATATTCAC GTGTTAAAAA TGAATGGACC CTCGTACAAC TATTGTTGGT 4758 .......... .......... .......... .......... .......... .......... 487 TGTACCTCGC TCAAAATAAA ATTTTTCCTT GTCGGAATAT ATAACACAAC CTAACTTATG 4698 .......... .......... .......... .......... .......... .......... 487 AATCCACTAA AAGCTTTAAT GAGGCACGTG AACTTTCACT CAGATTTCGA TATGATCCTA 4638 .......... .......... .......... .......... .......... .......... 487 TCTACGCTGA CAATGTAATT AATGGGGTTC AAGTTATCTT AACTTTTATC CAAAATGATG 4578 .......... .......... .......... .......... .......... .......... 487 TTCAATACTA CTCCAAACAT ACATATTAAT TCTCATATGG TAATACTTAC TAGATTGAAT 4518 .......... .......... .......... .......... .......... .......... 487 CAATACTAAA AAAATCCTTT TGAGGAATAA CTGATCTTGC TTTACTGATT GAAACTTCTC 4458 .......... .......... .......... .......... .......... .......... 487 TTGAAATTAA TTATACTTTT CTATAATTAA CAATATTTCT TAATACAAAA TAGTGAATTT 4398 .......... .......... .......... .......... .......... .......... 487 CGAATCATTA GTATTCTCTA AAAAACTCTT CTCAATGATA ACTTAAAACA CTTAAACTTA 4338 .......... .......... .......... .......... .......... .......... 487 CTTTAAATAA AAAGTTAGCG CACGATAGTA ATTATGCAAA AACTTTCAAC AATTCTCAAC 4278 .......... .......... .......... .......... .......... .......... 487 TAAATAGGGT TCATGTGATG CCATAAGCAT GACAACAATT TAAGAATGAA AATGAAGTTC 4218 .......... .......... .......... .......... .......... .......... 487 TATAATCTCA ATGATAAGAA TTGGAATTCA ACAACAAGGA ATAAAGATCA ATTTGAAATT 4158 .......... .......... .......... .......... .......... .......... 487 CATGAAAAAT TCGGTAAAAT TTTGAGGAAG AACGTAGTCC ATCATAATGA GTAGCTTTAT 4098 .......... .......... .......... .......... .......... .......... 487 TTATTTTGAA CCACTCTAAC TGAAACTCTA ACTTCAAATA GGAACTCTGT AAGTCCCTTT 4038 .......... .......... .......... .......... .......... .......... 487 TTTGAACTGT AGGATGAATT CTTATTTTCA TTAGATATGA GAGAGATTTG ATGTTAAAAT 3978 .......... .......... .......... .......... .......... .......... 487 CTTGTTAAGA ATTCGTGCTT AGAGATCGAA ATTGTTTAGA TTTAAGCTAG ATATAAGAAA 3918 .......... .......... .......... .......... .......... .......... 487 CATGTCTTGG AGTCGGACTT GAAGGAAAGG AGATAATTTG AGATAAAAAT AAATCATAGG 3858 .......... .......... .......... .......... .......... .......... 487 TCGTCTAAGA TAAACTTTAT AGCGATACAT TGACTTAACT TAATGAATAG AGAATCTTAA 3798 .......... .......... .......... .......... .......... .......... 487 TATCTAGACC CTTGACTTGG AGCGGTACGC ACACACTATA TGCTAAGCGC AACGCACAAC 3738 .......... .......... .......... .......... .......... .......... 487 CATTTAAAAA TAGCAGAGTT ATTCAAAAAT TTGCTTGGCA CGTGCGTCCA CGCTACGGGT 3678 .......... .......... .......... .......... .......... .......... 487 CACATAGAGA GCAGATCCAC TTCGAAAAAT AGTGAGGCTA CTGAAAAATT GGTTAAGCAT 3618 .......... .......... .......... .......... .......... .......... 487 AGTGCCCCCA TGTTATGGGC CGCATGGAGA ACACAGTCAC TTCAAAAATA ACGATACTAA 3558 .......... .......... .......... .......... .......... .......... 487 TGAAAAATTC GCTTGGTGTT AGAG 3534 ||| || |||| .......... ....GGTATT AGAG 497 hqPGS_C06HBa0046G10.1-3-_SGN-U334483- (5236 4964) ******************************************************************************** EST sequence 1 -strand 542 n (File: SGN-U313612-) 1 TTGTTGGGTT TTATTTGCTC TAAATTTCTT ACCATAAATA GATTTTCCTT GTAGGAAAAG 61 GTTTTGGATT GACTAATCCT TTTCTTGTAG GGAAAGGTTT AGGATTCTAT AAATAGAGGC 121 ATGTTCCTTT TAACTTAGTT AACATTCACA ATGTAGTCTT AAGGGCTTTG AGAGTTTTGG 181 TTAGAGGGAG AATTTGTGGG TCACAAGCTT GATACGTTAT TACTTGTGTG AACCTCCCAT 241 GTATTCTGAG TGAATTGGTT GAGATTGTTT CCCTCTGTAT TTTGTACTCT CATATTTATA 301 GTGGATTGCT CATCTCCTTT GTGGACATAG GTCGATTGAC CGAACCACGT TAAATCTTTG 361 TGTCTTTTGG TATATTTCTC GTTGTCTTCT TACTCGTGGT CTTTCGATGT TAGCATTGCT 421 AGCTTCCGCG TTTACACCTG CTTATTTTTC GGTCCATGCA TTATACGTAC GCCACCTATA 481 GTTGTAAATT AAGCCATTGC TTCTGCAGAC AAAATATACA TAGCTCTACT TAGTTTCTTT 541 TC Predicted gene structure (within gDNA segment 7314 to 2872): Exon 1 5425 4965 ( 461 n); cDNA 2 462 ( 461 n); score: 0.894 MATCH C06HBa0046G10.1-3- SGN-U313612- 0.894 461 0.851 C PGS_C06HBa0046G10.1-3-_SGN-U313612- (5425 4965) Alignment (genomic DNA sequence = upper lines): TGTTGAGTTT TATTTGCCCT AAATTTCTTA TCATAAATAG -GTTTCTTTT TAGGAAAAAA 5367 ||||| |||| ||||||| || |||||||||| ||||||||| |||| || |||||||| TGTTGGGTTT TATTTGCTCT AAATTTCTTA CCATAAATAG ATTTTCCTTG TAGGAAAAGG 61 TTTTGGATTG ACTAAATCAT TTTCTTGTAG GAAAATGTTT AGAATTCTAT AAATAGAGGA 5307 |||||||||| ||| |||| | |||||||||| | ||| |||| || ||||||| ||||||||| TTTTGGATTG ACT-AATCCT TTTCTTGTAG GGAAAGGTTT AGGATTCTAT AAATAGAGGC 120 ATGTTCCTTC TAACTTAACC AGCATTCACA ATGTAGTCTT AATGGCTTTG AGAGTTTTGG 5247 ||||||||| ||||||| | |||||||| |||||||||| || ||||||| |||||||||| ATGTTCCTTT TAACTTAGTT AACATTCACA ATGTAGTCTT AAGGGCTTTG AGAGTTTTGG 180 TTAGGGGGAG AATTTATGGG TCACAAGCTT GATACGTTAT CACTTGTGTG AACCTCCCAT 5187 |||| ||||| ||||| |||| |||||||||| |||||||||| ||||||||| |||||||||| TTAGAGGGAG AATTTGTGGG TCACAAGCTT GATACGTTAT TACTTGTGTG AACCTCCCAT 240 GTATTCTGAG TGAATTAGTT GAGGTTGTTT CCTTCTGTAT TTTGTACTCT CATATTTATA 5127 |||||||||| |||||| ||| ||| |||||| || ||||||| |||||||||| |||||||||| GTATTCTGAG TGAATTGGTT GAGATTGTTT CCCTCTGTAT TTTGTACTCT CATATTTATA 300 ATGGATTGCT CATCTCCTTT GTGGACGTAG GTCGATTGAC CGAACCACGT TAAATCTTTG 5067 ||||||||| |||||||||| |||||| ||| |||||||||| |||||||||| |||||||||| GTGGATTGCT CATCTCCTTT GTGGACATAG GTCGATTGAC CGAACCACGT TAAATCTTTG 360 TGTTTTTTGG TATATTTCTC GTTGTTTTTT TACTCGTGAT CTTTCGAGAT TTATTTTGCT 5007 ||| |||||| |||||||||| ||||| || | |||||||| | ||||||| | | ||||| TGTCTTTTGG TATATTTCTC GTTGTCTTCT TACTCGTGGT CTTTCGATGT TAGCATTGCT 420 AGCTTCCGCA TTTACACCTG CTTA-TTTCC GGTCCTAACA ATT 4965 ||||||||| |||||||||| |||| ||| | ||||| | ||| AGCTTCCGCG TTTACACCTG CTTATTTTTC GGTCC-ATGC ATT 462 hqPGS_C06HBa0046G10.1-3-_SGN-U313612- (5425 4965) ******************************************************************************** EST sequence 4 +strand 845 n (File: SGN-U313614+) 1 GTTGAGACAT AAATTTTGCA AAGGAGATTA TGGAGAGGAG AAGCAAGTTG TTGAAGATTA 61 AGTGAAGAAG GTGGACAAGT TTATTTGTCA GAAATTCAGG CCAAGGGGGA GACTTGTTGG 121 GTTTTATTTG CCCTAAATTT CTTACCATAA ATAGGTTTTC CTTGTAGGAA AAGGTTTTGG 181 ATTGACTAAT CCTTTTCCTT TTAGGAAAAG GTTTTGAATT GACTAATCCT TTTCTTGTAG 241 GAAAAGGTTT AGGACTCTAT AAATAGATGA ATATTCCTTT TAACTTAATC AGCATTCACA 301 ATGTAGTCTT ACAGGCTTTG AGAGTTTTGG TTAGAGGGAG AATCTGTGGG TCACAAGCTT 361 GATATGTTAT CACTTGTGTG AACCTCCCAT GTATTCTGAG TGAATTGGTT GAGGTTGTTT 421 CTCTCTGTAT TTTGTACTCT CATATTTATA GTGGATTGCT CATCTCCTTT GTGGACGTAG 481 GTCGATTGAC CGAACCACGT TAAATCTTTG TGTCTTTTGA TATATTTCTC GTTGTCTTCT 541 TACTCGTGGT CTTTTGAGGT TTGCATTGCT AGCTTCCGCG TTTACACCTG CTTATTTTCG 601 GTCCTAACAT ATCTGAGTTT GCAGTTCTGT CCCTCCACCC CCTTCTTTTT GCAGGCACAA 661 ATGGAATCAG TAAACTTAGC AGCAAATTCT TATTATGTAC CAGAATCTGA TTTTACGAGT 721 TATTTGAACT TTGGTGCTGC TGTCAGTGAG GTGGAGATTG ATATCCTGAC CGGAGAGACT 781 ACCATTTTGC AATCTGATAT TATTTACGAC TGTGGGCAGA GCTTGAATCC AGCCGTTGAT 841 ATGGG Predicted gene structure (within gDNA segment 7638 to 1134): Exon 1 5384 4968 ( 417 n); cDNA 194 609 ( 416 n); score: 0.916 MATCH C06HBa0046G10.1-3- SGN-U313614+ 0.916 417 0.493 C PGS_C06HBa0046G10.1-3-_SGN-U313614+ (5384 4968) Alignment (genomic DNA sequence = upper lines): TTTCTTTTTA GGAAAAAATT TTGGATTGAC TAAATCATTT TCTTGTAGGA AAATGTTTAG 5325 |||| ||||| |||||| || ||| |||||| | |||| ||| |||||||||| ||| |||||| TTTCCTTTTA GGAAAAGGTT TTGAATTGAC T-AATCCTTT TCTTGTAGGA AAAGGTTTAG 252 AATTCTATAA ATAGAGGAAT GTTCCTTCTA ACTTAACCAG CATTCACAAT GTAGTCTTAA 5265 | ||||||| ||||| |||| |||||| || |||||| ||| |||||||||| ||||||||| GACTCTATAA ATAGATGAAT ATTCCTTTTA ACTTAATCAG CATTCACAAT GTAGTCTTAC 312 TGGCTTTGAG AGTTTTGGTT AGGGGGAGAA TTTATGGGTC ACAAGCTTGA TACGTTATCA 5205 ||||||||| |||||||||| || ||||||| | | |||||| |||||||||| || ||||||| AGGCTTTGAG AGTTTTGGTT AGAGGGAGAA TCTGTGGGTC ACAAGCTTGA TATGTTATCA 372 CTTGTGTGAA CCTCCCATGT ATTCTGAGTG AATTAGTTGA GGTTGTTTCC TTCTGTATTT 5145 |||||||||| |||||||||| |||||||||| |||| ||||| ||||||||| ||||||||| CTTGTGTGAA CCTCCCATGT ATTCTGAGTG AATTGGTTGA GGTTGTTTCT CTCTGTATTT 432 TGTACTCTCA TATTTATAAT GGATTGCTCA TCTCCTTTGT GGACGTAGGT CGATTGACCG 5085 |||||||||| |||||||| | |||||||||| |||||||||| |||||||||| |||||||||| TGTACTCTCA TATTTATAGT GGATTGCTCA TCTCCTTTGT GGACGTAGGT CGATTGACCG 492 AACCACGTTA AATCTTTGTG TTTTTTGGTA TATTTCTCGT TGTTTTTTTA CTCGTGATCT 5025 |||||||||| |||||||||| | ||||| || |||||||||| ||| || ||| |||||| ||| AACCACGTTA AATCTTTGTG TCTTTTGATA TATTTCTCGT TGTCTTCTTA CTCGTGGTCT 552 TTCGAGATTT ATTTTGCTAG CTTCCGCATT TACACCTGCT TATTTCCGGT CCTAACA 4968 || ||| ||| ||||||| ||||||| || |||||||||| ||||| |||| ||||||| TTTGAGGTTT GCATTGCTAG CTTCCGCGTT TACACCTGCT TATTTTCGGT CCTAACA 609 hqPGS_C06HBa0046G10.1-3-_SGN-U313614+ (5384 4968) Total number of EST alignments reported: 5 ________________________________________________________________________________ Predicted gene locations (2) in segment 1 to 7638: PGL 1 (+ strand): 1749 1960 AGS-1 (1749 1960) SCR (e 0.828) Exon 1 1749 1960 ( 212 n); score: 0.828 PGS (1749 1960) SGN-U344810- 3-phase translation of AGS-1 (+strand): . . . . . . 1749 AATTTTAGACTTTCCTATTTATTCTCTGTAACCAAAAATACTCTGATTTATTAATATAAA N F R L S Y L F S V T K N T L I Y - Y K I L D F P I Y S L - P K I L - F I N I N F - T F L F I L C N Q K Y S D L L I - . . . . . . 1809 TATACCTCACCGTCGTGGAAGTTTACTCACGGGGTGTTACCACGAAATATTGGGTTTTCT Y T S P S W K F T H G V L P R N I G F S I P H R R G S L L T G C Y H E I L G F L I Y L T V V E V Y S R G V T T K Y W V F . . . . . . 1869 CTTTCTCTATCTAGATATCTCATCTCTTTCTCTTGAAAGTTCTGGTGTTCTTCATTCATC L S L S R Y L I S F S - K F W C S S F I F L Y L D I S S L S L E S S G V L H S S S F S I - I S H L F L L K V L V F F I H . . . . 1929 AAGTGTGTATGCGTGAATTCGATCCCAACATA K C V C V N S I P T S V Y A - I R S Q H Q V C M R E F D P N I Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-1 (-strand): . . . . . . 1960 TATGTTGGGATCGAATTCACGCATACACACTTGATGAATGAAGAACACCAGAACTTTCAA Y V G I E F T H T H L M N E E H Q N F Q M L G S N S R I H T - - M K N T R T F K C W D R I H A Y T L D E - R T P E L S . . . . . . 1900 GAGAAAGAGATGAGATATCTAGATAGAGAAAGAGAAAACCCAATATTTCGTGGTAACACC E K E M R Y L D R E R E N P I F R G N T R K R - D I - I E K E K T Q Y F V V T P R E R D E I S R - R K R K P N I S W - H . . . . . . 1840 CCGTGAGTAAACTTCCACGACGGTGAGGTATATTTATATTAATAAATCAGAGTATTTTTG P - V N F H D G E V Y L Y - - I R V F L R E - T S T T V R Y I Y I N K S E Y F W P V S K L P R R - G I F I L I N Q S I F . . . . 1780 GTTACAGAGAATAAATAGGAAAGTCTAAAATT V T E N K - E S L K L Q R I N R K V - N G Y R E - I G K S K I Maximal non-overlapping open reading frames (>= 64 codons): none PGL 2 (- strand): 5430 4964 AGS-1 (5425 4964) SCR (e 0.894) Exon 1 5425 4964 ( 462 n); score: 0.894 PGS (5236 4964) SGN-U334483- PGS (5425 4965) SGN-U313612- PGS (5384 4968) SGN-U313614+ 3-phase translation of AGS-1 (-strand): . . . . . . 5425 TGTTGAGTTTTATTTGCCCTAAATTTCTTATCATAAATAGGTTTCTTTTTAGGAAAAAAT C - V L F A L N F L S - I G F F L G K N V E F Y L P - I S Y H K - V S F - E K I L S F I C P K F L I I N R F L F R K K . . . . . . 5365 TTTGGATTGACTAAATCATTTTCTTGTAGGAAAATGTTTAGAATTCTATAAATAGAGGAA F G L T K S F S C R K M F R I L - I E E L D - L N H F L V G K C L E F Y K - R N F W I D - I I F L - E N V - N S I N R G . . . . . . 5305 TGTTCCTTCTAACTTAACCAGCATTCACAATGTAGTCTTAATGGCTTTGAGAGTTTTGGT C S F - L N Q H S Q C S L N G F E S F G V P S N L T S I H N V V L M A L R V L V M F L L T - P A F T M - S - W L - E F W . . . . . . 5245 TAGGGGGAGAATTTATGGGTCACAAGCTTGATACGTTATCACTTGTGTGAACCTCCCATG - G E N L W V T S L I R Y H L C E P P M R G R I Y G S Q A - Y V I T C V N L P C L G G E F M G H K L D T L S L V - T S H . . . . . . 5185 TATTCTGAGTGAATTAGTTGAGGTTGTTTCCTTCTGTATTTTGTACTCTCATATTTATAA Y S E - I S - G C F L L Y F V L S Y L - I L S E L V E V V S F C I L Y S H I Y N V F - V N - L R L F P S V F C T L I F I . . . . . . 5125 TGGATTGCTCATCTCCTTTGTGGACGTAGGTCGATTGACCGAACCACGTTAAATCTTTGT W I A H L L C G R R S I D R T T L N L C G L L I S F V D V G R L T E P R - I F V M D C S S P L W T - V D - P N H V K S L . . . . . . 5065 GTTTTTTGGTATATTTCTCGTTGTTTTTTTACTCGTGATCTTTCGAGATTTATTTTGCTA V F W Y I S R C F F T R D L S R F I L L F F G I F L V V F L L V I F R D L F C - C F L V Y F S L F F Y S - S F E I Y F A . . . . . 5005 GCTTCCGCATTTACACCTGCTTATTTCCGGTCCTAACAATTG A S A F T P A Y F R S - Q L L P H L H L L I S G P N N S F R I Y T C L F P V L T I Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-1 (+strand): . . . . . . 4964 CAATTGTTAGGACCGGAAATAAGCAGGTGTAAATGCGGAAGCTAGCAAAATAAATCTCGA Q L L G P E I S R C K C G S - Q N K S R N C - D R K - A G V N A E A S K I N L E I V R T G N K Q V - M R K L A K - I S . . . . . . 5024 AAGATCACGAGTAAAAAAACAACGAGAAATATACCAAAAAACACAAAGATTTAACGTGGT K I T S K K T T R N I P K N T K I - R G R S R V K K Q R E I Y Q K T Q R F N V V K D H E - K N N E K Y T K K H K D L T W . . . . . . 5084 TCGGTCAATCGACCTACGTCCACAAAGGAGATGAGCAATCCATTATAAATATGAGAGTAC S V N R P T S T K E M S N P L - I - E Y R S I D L R P Q R R - A I H Y K Y E S T F G Q S T Y V H K G D E Q S I I N M R V . . . . . . 5144 AAAATACAGAAGGAAACAACCTCAACTAATTCACTCAGAATACATGGGAGGTTCACACAA K I Q K E T T S T N S L R I H G R F T Q K Y R R K Q P Q L I H S E Y M G G S H K Q N T E G N N L N - F T Q N T W E V H T . . . . . . 5204 GTGATAACGTATCAAGCTTGTGACCCATAAATTCTCCCCCTAACCAAAACTCTCAAAGCC V I T Y Q A C D P - I L P L T K T L K A - - R I K L V T H K F S P - P K L S K P S D N V S S L - P I N S P P N Q N S Q S . . . . . . 5264 ATTAAGACTACATTGTGAATGCTGGTTAAGTTAGAAGGAACATTCCTCTATTTATAGAAT I K T T L - M L V K L E G T F L Y L - N L R L H C E C W L S - K E H S S I Y R I H - D Y I V N A G - V R R N I P L F I E . . . . . . 5324 TCTAAACATTTTCCTACAAGAAAATGATTTAGTCAATCCAAAATTTTTTCCTAAAAAGAA S K H F P T R K - F S Q S K I F S - K E L N I F L Q E N D L V N P K F F P K K K F - T F S Y K K M I - S I Q N F F L K R . . . . . 5384 ACCTATTTATGATAAGAAATTTAGGGCAAATAAAACTCAACA T Y L - - E I - G K - N S T P I Y D K K F R A N K T Q N L F M I R N L G Q I K L N Maximal non-overlapping open reading frames (>= 64 codons): none AGS-2 (5430 5329,5192 4979) SCR (e 0.828 d 0.000 a 0.000,e 0.893) Exon 1 5430 5329 ( 102 n); score: 0.828 Intron 1 5328 5193 ( 136 n); Pd: 0.000 Pa: 0.000 Exon 2 5192 4979 ( 214 n); score: 0.893 PGS (5430 5329,5192 4979) SGN-U313613+ 3-phase translation of AGS-2 (-strand): . . . . . . 5430 ATTGGTGTTGAGTTTTATTTGCCCTAAATTTCTTATCATAAATAGGTTTCTTTTTAGGAA I G V E F Y L P - I S Y H K - V S F - E L V L S F I C P K F L I I N R F L F R K W C - V L F A L N F L S - I G F F L G . . . . . : . 5370 AAAATTTTGGATTGACTAAATCATTTTCTTGTAGGAAAATGT : TCCCATGTATTCTGAGTG K I L D - L N H F L V G K C : S H V F - V K F W I D - I I F L - E N V : P M Y S E - K N F G L T K S F S C R K M : F P C I L S . . . . . . 5174 AATTAGTTGAGGTTGTTTCCTTCTGTATTTTGTACTCTCATATTTATAATGGATTGCTCA N - L R L F P S V F C T L I F I M D C S I S - G C F L L Y F V L S Y L - W I A H E L V E V V S F C I L Y S H I Y N G L L . . . . . . 5114 TCTCCTTTGTGGACGTAGGTCGATTGACCGAACCACGTTAAATCTTTGTGTTTTTTGGTA S P L W T - V D - P N H V K S L C F L V L L C G R R S I D R T T L N L C V F W Y I S F V D V G R L T E P R - I F V F F G . . . . . . 5054 TATTTCTCGTTGTTTTTTTACTCGTGATCTTTCGAGATTTATTTTGCTAGCTTCCGCATT Y F S L F F Y S - S F E I Y F A S F R I I S R C F F T R D L S R F I L L A S A F I F L V V F L L V I F R D L F C - L P H . . 4994 TACACCTGCTTATTTC Y T C L F T P A Y F L H L L I Maximal non-overlapping open reading frames (>= 64 codons): none ... finished at: Mon Jul 24 23:34:17 2006 ________________________________________________________________________________ Sequence 4: C06HBa0046G10.1-4, from 1 to 25558, both strands analyzed. ... started at: Mon Jul 24 23:34:17 2006 EST library file: /tmp/cxgn-bacpublish-resources-3cdDhp/lycopersicum_combined_unigene_seqs; matching gDNA +strand ... ... found all matches, elapsed seconds = 2 ... matches indexed, elapsed seconds = 2 HitsTableSize = 7 EST library file: /tmp/cxgn-bacpublish-resources-3cdDhp/lycopersicum_combined_unigene_seqs; matching gDNA -strand ... ... found all matches, elapsed seconds = 2 ... matches indexed, elapsed seconds = 2 HitsTableSize = 3 ******************************************************************************** EST sequence 1 +strand 1346 n (File: SGN-U323272+) 1 AAAAAATATA AAACAAAACA CCTTCCATAA ACAAAGTGAC GACTACGTCG GATTAAGTCC 61 CTCCAGAAAC CCCAAATCAA AATTCTCGGT CCTATAAACC CCAGGTGTTT TCTTCTTCTT 121 CTTCCCAATT CTCAAAATCT TACCATTTCT CGCCATGGAT GAAGAAGAGA TTGAGAAAGC 181 AGTCGTAGCG TATTTGAAGA AGAAGGGTTT CAAGCAAACG GAGATTGCTT TTCAAGAAGA 241 ACAGCAAGTG AATAAAAACA GTTCTTCTTC AATCCATAAT AACAACAACT CAGCAAATTC 301 TCAGATTGAC CCCGACTTAA CCAAAAAAAT CCTTTCTTTC TCTGAATTTG AAACCAGTCC 361 CCAACGATAC CAAGAAGAAT ATAGCAAACT TCGGTCATGG GCCTATAGTT CACTGGATCT 421 GTATAAGCAT GAGTTGCTTC GTGTTTTATA TCCTGTATTT ATTCATTGTT TCATGGAACT 481 TGTCGCTAGA GGTTATATTC AAGAAGCACG AGCCTTTTTC AATAGTTACC GTGAAGACCA 541 TGAGATGACG CATCTGCGTG ATCTTCAGAA GTTAGAAGGC GTCCTCTCAC CTTCCCATCT 601 AGAGGAAATG GAATTTGCTC ATTCTATACG GGTGAGCAAA GTGAACATTA AGATGTGTCA 661 GTACTCCTAT GACCTTCTGT TGCAATACTT GCACAAGACA GAATCTATTA CAATGCTTGG 721 GATCATCAAT GAGCGCATTA ATTTTCAAGT TTCTCCTGGA CAGCCTGGCT CTATATCTGG 781 TGATACGGAA GTTGTAACTC TTGTTGCAAG TGGCCATGAT GCTAGTCTCA TAAATCAGAA 841 AGAAGTTCTT TGGGGGATGC TTGAAGATTC TTTAGAAGAC CGGTTAGAAA AGACAGGAGG 901 TTCTGTTCCA GATTCGGAAA AGTTTGATGG AGATCCGAAG GAAGGAGAAG TGGAAGAAAA 961 CAAGAAGAAG TCAATTGAAG GTGGTAAACA TGGTGCACCT CTTAAAAAAC TAAAGAAGGA 1021 CAAAGTTGGG ATTGCAACAG GGAAATCTTC TCGTACAGAG AGCAGCACAG TGACAACTGC 1081 ACCACGTGTC AAACCGGAAC TTGCTTTACC TGCTATGTAC TCCTCAAACC TATTATCTTA 1141 CTTACCAAAA GAAAAAGAGA GGGCCCTATT GTGTTTTTCT CTCCCACGAC ATCATCCCTG 1201 TACTTGGAAA AGTCATTCTT GTTGGATGTC ATAATTTTAT TTGAAATACA GTCATCATGA 1261 TCCATTAGAA AACATCAAGT GAAACGGCTA TACAAAGAAG TTGCATAAAA AAAAAAAAAA 1321 AAAAACTCGA GGGGGGCCCG TACCCA Predicted gene structure (within gDNA segment 2533 to 13214): Exon 1 3133 3477 ( 345 n); cDNA 1 345 ( 345 n); score: 0.994 Intron 1 3478 4650 (1173 n); Pd: 0.998 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 2 4651 4732 ( 82 n); cDNA 346 427 ( 82 n); score: 1.000 Intron 2 4733 6726 (1994 n); Pd: 0.815 (s: 1.00), Pa: 0.328 (s: 1.00) Exon 3 6727 6805 ( 79 n); cDNA 428 506 ( 79 n); score: 1.000 Intron 3 6806 6882 ( 77 n); Pd: 0.900 (s: 1.00), Pa: 0.975 (s: 1.00) Exon 4 6883 6980 ( 98 n); cDNA 507 604 ( 98 n); score: 1.000 Intron 4 6981 7065 ( 85 n); Pd: 0.979 (s: 1.00), Pa: 0.985 (s: 1.00) Exon 5 7066 7122 ( 57 n); cDNA 605 661 ( 57 n); score: 1.000 Intron 5 7123 7696 ( 574 n); Pd: 0.985 (s: 1.00), Pa: 0.648 (s: 1.00) Exon 6 7697 7784 ( 88 n); cDNA 662 749 ( 88 n); score: 1.000 Intron 6 7785 9491 (1707 n); Pd: 0.915 (s: 1.00), Pa: 0.976 (s: 1.00) Exon 7 9492 9598 ( 107 n); cDNA 750 856 ( 107 n); score: 1.000 Intron 7 9599 11629 (2031 n); Pd: 0.997 (s: 1.00), Pa: 0.997 (s: 0.96) Exon 8 11630 11737 ( 108 n); cDNA 857 964 ( 108 n); score: 0.981 Intron 8 11738 11916 ( 179 n); Pd: 0.999 (s: 1.00), Pa: 0.912 (s: 1.00) Exon 9 11917 12269 ( 353 n); cDNA 965 1317 ( 353 n); score: 0.994 MATCH C06HBa0046G10.1-4+ SGN-U323272+ 0.995 1317 0.978 C PGS_C06HBa0046G10.1-4+_SGN-U323272+ (3133 3477,4651 4732,6727 6805,6883 6980,7066 7122,7697 7784,9492 9598,11630 11737,11917 12269) Alignment (genomic DNA sequence = upper lines): AAAAAATATA AAACAAAACA CCTTCCATAA ACAAAGTGAC GACGACGTCG TATTAAGTCC 3192 |||||||||| |||||||||| |||||||||| |||||||||| ||| |||||| ||||||||| AAAAAATATA AAACAAAACA CCTTCCATAA ACAAAGTGAC GACTACGTCG GATTAAGTCC 60 CTCCAGAAAC CCCAAATCAA AATTCTCGGT CCTATAAACC CCAGGTGTTT TCTTCTTCTT 3252 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCCAGAAAC CCCAAATCAA AATTCTCGGT CCTATAAACC CCAGGTGTTT TCTTCTTCTT 120 CTTCCCAATT CTCAAAATCT TACCATTTCT CGCCATGGAT GAAGAAGAGA TTGAGAAAGC 3312 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTCCCAATT CTCAAAATCT TACCATTTCT CGCCATGGAT GAAGAAGAGA TTGAGAAAGC 180 AGTCGTAGCG TATTTGAAGA AGAAGGGTTT CAAGCAAACG GAGATTGCTT TTCAAGAAGA 3372 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTCGTAGCG TATTTGAAGA AGAAGGGTTT CAAGCAAACG GAGATTGCTT TTCAAGAAGA 240 ACAGCAAGTG AATAAAAACA GTTCTTCTTC AATCCATAAT AACAACAACT CAGCAAATTC 3432 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACAGCAAGTG AATAAAAACA GTTCTTCTTC AATCCATAAT AACAACAACT CAGCAAATTC 300 TCAGATTGAC CCCGACTTAA CCAAAAAAAT CCTTTCTTTC TCTGAGTAAG TTTCTTTTTT 3492 |||||||||| |||||||||| |||||||||| |||||||||| ||||| TCAGATTGAC CCCGACTTAA CCAAAAAAAT CCTTTCTTTC TCTGA..... .......... 345 CCACTTAATT TGATGTAAAA ATTACTGTTT GGCTAAGAGG ATTAAGTTCT AAAATCAATT 3552 .......... .......... .......... .......... .......... .......... 345 TACCTTGAAA GATAGTTTAA TTTCAATGAA ACACGTTTAA GTAGAGAAGG ATTGAGTACA 3612 .......... .......... .......... .......... .......... .......... 345 GAAGATCTGA AAACTAGTTT AGGGTTGAGA GGTGACTTGG TTGTTGGAAG AAAAGCAGGA 3672 .......... .......... .......... .......... .......... .......... 345 GCAATATAAT TGAAGCAGTT TTTCTGCACC CTCCAGTAGC ATTTCTGCAA ATGCCCAAAT 3732 .......... .......... .......... .......... .......... .......... 345 TGACCCTGAA CCGTCAGACA AAAATAATCT GTTCTCTGTA GATAACATAA ATTTAATTAC 3792 .......... .......... .......... .......... .......... .......... 345 TGGACCCATT CTAAAGAGGG AGAAATCAGC ACTACTTGGT GAAATAGGTT CTTTTTGAAT 3852 .......... .......... .......... .......... .......... .......... 345 CAATTGTCCT CTTCTCCTGT ATTTTAAATG CAGAGTGCTT AGCCATGAGG TTGCGGTTCT 3912 .......... .......... .......... .......... .......... .......... 345 AAATAGCATT GACAATGCCC AGAACCACTT TTGAGGTACT AGCACACTGT CTAGGAATTG 3972 .......... .......... .......... .......... .......... .......... 345 GAAAGAGAGG ATCAAAGGAA ATTTGGCGGA AGAATATCCC TGTTTGTATC TGGTGGACGT 4032 .......... .......... .......... .......... .......... .......... 345 TATGAAAAAA AAAGGAATGA GAGATATTAT GAAGGGAAGG GTAGCAGCAC ACAGAAGATC 4092 .......... .......... .......... .......... .......... .......... 345 AAGATGAGAT CTCTTAGTAT TATATTTTTT TGGTGTAAGC AAGATTTAGT GGGGACAATA 4152 .......... .......... .......... .......... .......... .......... 345 GATAGCTTAG TGGAGATTAT AGGCCAACTG TAAATTTTTG AAAGTTTGTT TTTGGATTTT 4212 .......... .......... .......... .......... .......... .......... 345 GAGTATGATG GCATCCCCTG GGGTTTGTAA ATTCCTCCTC ATCAGTCTGA TGAGTTCTTT 4272 .......... .......... .......... .......... .......... .......... 345 TGTGCGGATT TAAGTTACCT ATTTCAAAAT AAATAAATAA ATAGAGGGGA TGTAGAGGAG 4332 .......... .......... .......... .......... .......... .......... 345 GATTTATGAG CTGACCCAAA GTCTCAAACT GTTTAGGATT GAGGCTTCAT TAGTTGTTTC 4392 .......... .......... .......... .......... .......... .......... 345 AAGAAGGGAA GCAACAATAA TTGTGTGTTT GGTATGGAGG AAGCTTTGGT GTTATTTTAC 4452 .......... .......... .......... .......... .......... .......... 345 ATTCTATTAG TGACATTACA CTTTGGAGCT TCCTACTTTT AGAATATTAC AGATATAGAT 4512 .......... .......... .......... .......... .......... .......... 345 GGATAGATGT TATGGCTCCG TTTTCACACC GCCTTACACT AGCTGGAAGT CTTGACAGCT 4572 .......... .......... .......... .......... .......... .......... 345 GTATAACGCA TACTTTCTGG TTATTTTCTT AGCATGCATC TTTGATATCA TTCTGAATCT 4632 .......... .......... .......... .......... .......... .......... 345 AAATTTTTAT GTTTTCAGAT TTGAAACCAG TCCCCAACGA TACCAAGAAG AATATAGCAA 4692 || |||||||||| |||||||||| |||||||||| |||||||||| .......... ........AT TTGAAACCAG TCCCCAACGA TACCAAGAAG AATATAGCAA 387 ACTTCGGTCA TGGGCCTATA GTTCACTGGA TCTGTATAAG GTTGGTCCCC TGACTTGTGC 4752 |||||||||| |||||||||| |||||||||| |||||||||| ACTTCGGTCA TGGGCCTATA GTTCACTGGA TCTGTATAAG .......... .......... 427 TAACAGTAAC ATGAGAAGTA GTTTATGCAG TATCATGATG CATAGCTCCT CATGACATGT 4812 .......... .......... .......... .......... .......... .......... 427 AATGCACTAA TAATAGGTCT GCCACCAGTA ACACCATAGG AAATAAACAT AAATGGAAAG 4872 .......... .......... .......... .......... .......... .......... 427 GAAAGGCTTT CATTTTCTCT TTTATTTAGC CCTTTTTAAT CCTTAACATA ATGTATTAGT 4932 .......... .......... .......... .......... .......... .......... 427 GATGTGCACC TTGACCTATT AATACTTCTG CTGCTGTCTT TCTGGCAGTG ACAAGGTCTT 4992 .......... .......... .......... .......... .......... .......... 427 CAAAATTGAG TTCTCATATT TGTGATTCTC AACTCTAGTT CATTGACTTA TGCTATAAAT 5052 .......... .......... .......... .......... .......... .......... 427 GTAGCACCAG TGATGGATTT AGTACTGTCT TCTACCATTG CGATCATAAT AGCGAGCCAA 5112 .......... .......... .......... .......... .......... .......... 427 AAATAGCTCT TCATAACATA AGCATGACAA GCGTGCCGTC TTCATACAAG TTAGGTTGTG 5172 .......... .......... .......... .......... .......... .......... 427 TGATTATACA AGCCAGATGA AAAAGTGATG AAAATGGTTC CATATGTTTG GTAGGTTCAA 5232 .......... .......... .......... .......... .......... .......... 427 GTTGGTCCCT TAATACTCTT GAACAATTTT GGTCCTTTAA GTTCACCAAA AGCGAAAACA 5292 .......... .......... .......... .......... .......... .......... 427 CCCTTTGGGG GGGGGGGCAG TGGTTTGGGC TTGGGGCTTC CATTTTGGAG GTTTCAAGTT 5352 .......... .......... .......... .......... .......... .......... 427 CGAAACCCCT TGCTAGCAAA AGCAAGGGTC CAGTTTAGAA AATCAAGAGA TAATTTACCT 5412 .......... .......... .......... .......... .......... .......... 427 TTTGTGTCCT TTGTTATTAA ATACTATTTA TCATCTAACA CATTTTCCAG AGCATTAAAT 5472 .......... .......... .......... .......... .......... .......... 427 TTAATAAAGT CAAAGGATAA AATAGTAATG TTACCGCTAT TATTTATTGT TTCTTAAGGG 5532 .......... .......... .......... .......... .......... .......... 427 TGTGCTAAGT CAATAGTAGA CAACTATTGT TGGACCAAGG GAGTAACATC TATAGTTTCA 5592 .......... .......... .......... .......... .......... .......... 427 ACGTTTGCCA GCTTGCTAAT TTTGGTTTAT TTTTGGAGGA TGGTGCAGCT TTTGAAGTGC 5652 .......... .......... .......... .......... .......... .......... 427 AATTTTGCCA TCTTTTAATA TCTATTGTGT GGTATATGGT TCAATTTTTG GTGTTGCAAT 5712 .......... .......... .......... .......... .......... .......... 427 TTTCAAGATA GGACAGGACT TTTTGGTGTT TTTGGTTGGA TAGTTATTTT GACCATTCCG 5772 .......... .......... .......... .......... .......... .......... 427 ATGAAGTCTA CCCATTCAAG TTCTGTTTAA AAAAAAAAAG GGTCCAACCA CTTGAGTTCT 5832 .......... .......... .......... .......... .......... .......... 427 GTTTCAAAAA AAAAAGTCTT AACCATCCGA GTTTGTTAAA TATTTGTCAG AGACCAAATG 5892 .......... .......... .......... .......... .......... .......... 427 CTCACTTTTG GCAAACTTAG AAAACCCAAA TTGTTGGGGG GTATATTGAA GGACCACCTT 5952 .......... .......... .......... .......... .......... .......... 427 GAACCTATAC TCAAACATAA GGAGCCATTT TTTCTCTCTC TCCAAGTTAG ACACTTCCTT 6012 .......... .......... .......... .......... .......... .......... 427 TTGACTTACT CTTTAATCTT CAAGATTTTG TGGTTTCCTG TAATAGCTGA AGCTACCTTC 6072 .......... .......... .......... .......... .......... .......... 427 CATTTATTTT TGTCCATTTC TGTCTACCTT GTCTCAGTCC ATTCCAGATT GCCTCTCTCT 6132 .......... .......... .......... .......... .......... .......... 427 TTCTATTGGA ATTGAAGGAT GTGCTGTGTG CATCTGGATT TTCTCCAATT CCAACATAAT 6192 .......... .......... .......... .......... .......... .......... 427 CTGATATTGA TTGAAAAGAG GGAAGTTAAG CTAGCTAACG AAGGGGTTGG GATCCGCCTC 6252 .......... .......... .......... .......... .......... .......... 427 GCCCTTAAAG ATCCGCCCCT CGTTTCACTC TGAAAATTTA TTATCAGCTC CTTCTGTTAT 6312 .......... .......... .......... .......... .......... .......... 427 TTAGCCATCT CTCTCCATAA AATTCTTTCA CGTACATGAA AGTTATTTCA TATCCTAGAG 6372 .......... .......... .......... .......... .......... .......... 427 AGTGCGGTTG TATTGTCTCT CTAAAGAATC GTAGGATCCA TTGGAGATAA AATGAAACAA 6432 .......... .......... .......... .......... .......... .......... 427 TTTTAAATGC CGAGTGTTCT GTTTCCTTTT TTTCCTTTGG TCGTTTCTCT TTCTGCAGTG 6492 .......... .......... .......... .......... .......... .......... 427 CTGTTACTGC TTAGAATACC TTTCGGTTCG CAGAAATGAT GTGCAAACTT TGTTGTTTCC 6552 .......... .......... .......... .......... .......... .......... 427 AACAGTTTGG CCATTGTATA TATTGGGGTT GTTAAGTCTT TCTCTTTTAT AGTATGCGTG 6612 .......... .......... .......... .......... .......... .......... 427 ACTCATTTAA AATCATCTTA TATTATGTTG ATTATTGTTA TCCTCTTTTA TTTGTTAGAT 6672 .......... .......... .......... .......... .......... .......... 427 GAGATTATTG TTATTATTGA TTCATCTGAA CATATATATA TTTCAATCTT GCAGCATGAG 6732 |||||| .......... .......... .......... .......... .......... ....CATGAG 433 TTGCTTCGTG TTTTATATCC TGTATTTATT CATTGTTTCA TGGAACTTGT CGCTAGAGGT 6792 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGCTTCGTG TTTTATATCC TGTATTTATT CATTGTTTCA TGGAACTTGT CGCTAGAGGT 493 TATATTCAAG AAGGTATACT TTGTCAGTTA TGTTTTGGTT GTATTTTGAT ATTTGTGAGA 6852 |||||||||| ||| TATATTCAAG AAG....... .......... .......... .......... .......... 506 GAATTTTTAA CACAATTCTT TTATTTCCAG CACGAGCCTT TTTCAATAGT TACCGTGAAG 6912 |||||||||| |||||||||| |||||||||| .......... .......... .......... CACGAGCCTT TTTCAATAGT TACCGTGAAG 536 ACCATGAGAT GACGCATCTG CGTGATCTTC AGAAGTTAGA AGGCGTCCTC TCACCTTCCC 6972 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACCATGAGAT GACGCATCTG CGTGATCTTC AGAAGTTAGA AGGCGTCCTC TCACCTTCCC 596 ATCTAGAGGT ACATCAATAT CCTAGCAACT GTGTGGATGA CCTTTTCCAT GCTTAAGTGT 7032 |||||||| ATCTAGAG.. .......... .......... .......... .......... .......... 604 GTCATAGATC ACTAAACTTA TTCCGAAATG CAGGAAATGG AATTTGCTCA TTCTATACGG 7092 ||||||| |||||||||| |||||||||| .......... .......... .......... ...GAAATGG AATTTGCTCA TTCTATACGG 631 GTGAGCAAAG TGAACATTAA GATGTGTCAG GTATTCTCTT GATCCTTTTG CTTCCTCTGG 7152 |||||||||| |||||||||| |||||||||| GTGAGCAAAG TGAACATTAA GATGTGTCAG .......... .......... .......... 661 TTGAATTTTT CTGCTACTAT AGTGCACACT AATGTCTCAA CTGTGAAAGC CAAGTGTGTC 7212 .......... .......... .......... .......... .......... .......... 661 GGGGTTTGTT AGCAATTGGT GACAAATGCA TATCGAGTTA GTAGTTACAA AGGAGGAAAA 7272 .......... .......... .......... .......... .......... .......... 661 GAAACTAATG TGATATTTCA CTTTAGAGTG CATTATCTTT CATTTCCTTC TCTTGACCAC 7332 .......... .......... .......... .......... .......... .......... 661 TTATTTTGCT GTGGAACTTC AACTTTTTGA CAAAAAATCC ACCTCTTTCC AAATCTTTTC 7392 .......... .......... .......... .......... .......... .......... 661 TTTTGAAGCT GAACTTCTAT TAGTTATGTT GATGAAATAG CAAACACTGG TTCATTTTGT 7452 .......... .......... .......... .......... .......... .......... 661 AGGTTTGTTG GAATTAACTA CAACATTTAG TCTATTGTTC TCATGCCATG GATCTTATCA 7512 .......... .......... .......... .......... .......... .......... 661 CCATGTATAT TAAAGGAACA ATCATTTGTC TAATGGTTTT TCTAGTTTGG TGGATTTACG 7572 .......... .......... .......... .......... .......... .......... 661 TGCAGTTTGA TTACTGTTTT TTGGTCAATA TACATGTCTG GCACCATTTG ATTACTTTTT 7632 .......... .......... .......... .......... .......... .......... 661 ACCACGCATA CCTTTAGACT TAACTGGATT AGCCTTTTGA TTTGCTTATT TTACTCTGAA 7692 .......... .......... .......... .......... .......... .......... 661 ACAGTACTCC TATGACCTTC TGTTGCAATA CTTGCACAAG ACAGAATCTA TTACAATGCT 7752 |||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ....TACTCC TATGACCTTC TGTTGCAATA CTTGCACAAG ACAGAATCTA TTACAATGCT 717 TGGGATCATC AATGAGCGCA TTAATTTTCA AGGTGCACTT CCCATTTTCG CAGTTGCTTT 7812 |||||||||| |||||||||| |||||||||| || TGGGATCATC AATGAGCGCA TTAATTTTCA AG........ .......... .......... 749 CAACCTTTCA ATTTGCAACT ATGTTAAATT GACCATTTTA ATTTAGCGTA ATCTTTTTTG 7872 .......... .......... .......... .......... .......... .......... 749 ATTAAGTAAA GTATTTCATT AAGAAAACAA GGCCGAGATG ACTGTAAACA AGAGATATAC 7932 .......... .......... .......... .......... .......... .......... 749 CCTAAAAGAA GAAACCTACA AAAATATGGT TCACTCTAAA ATACACCCAA TCCTCTATAC 7992 .......... .......... .......... .......... .......... .......... 749 TAATAGGAAC GACATGGTGC ACCAAAAGAA AATAGGGAGT GGAGACTGCT ACTTAGTTGA 8052 .......... .......... .......... .......... .......... .......... 749 GCAAGGCTCA TCTCCATTCC TTCAAAAGCC CCCATATTTC TCTCTCCAAA TGACCCACGT 8112 .......... .......... .......... .......... .......... .......... 749 TAAAGCAAGA GAAGTAACAT TCCAAGCCTT TTGCCTTCTT CTCCTGGCAC CAGTTGTCGA 8172 .......... .......... .......... .......... .......... .......... 749 ACTAAACATC AACTCTTTCA CGGATCTTGG CATCAGCCCT GAAATGCCGA ACCATCTAAA 8232 .......... .......... .......... .......... .......... .......... 749 GATACCCTAC CATAACCTCA TTGCTAGATT GCAATGTAGC ATAATATGAT CCACGATCTC 8292 .......... .......... .......... .......... .......... .......... 749 ACCTGCCTCC TTACTAAGGA AACACCAACT AATACAGACA ACTTTCCATT TCCTAACATT 8352 .......... .......... .......... .......... .......... .......... 749 CTCCGCCGTC AAAATCACCC CTCTATAAAC TAACCAAGTG AAGAAGCACC CCTTCCTTGG 8412 .......... .......... .......... .......... .......... .......... 749 AATCCTAGGA ATATCGTAAA TATTTATTCC ACCATGAAGT GTTTAGGAAG AAGCAGTTAC 8472 .......... .......... .......... .......... .......... .......... 749 ATCTTTCCAT TTATATTGGT ATGATAGTGA AACCATATGA GAAGGAAGAA GAGAAATGTC 8532 .......... .......... .......... .......... .......... .......... 749 TTTTCCTTGA CCATTGTCCT TTAGAACAAA TGCTCATCAT TACATCCACT GAATAAAGAC 8592 .......... .......... .......... .......... .......... .......... 749 GGGGAAAGGA AAAGCGTTCC AATTTAAATT CAACTTCTTT CTGTCAGATC ATTGTTTATT 8652 .......... .......... .......... .......... .......... .......... 749 TTGTCCCTCC ATGATCACTT AACCATCTCA ATCCTCTGGA ACCAAATTAC ATGACTAGAG 8712 .......... .......... .......... .......... .......... .......... 749 GGGAACTGTC ATGTTTATTA TAAATAGTGG TGAATTTTAC CATAATTACT TCCTTTATAT 8772 .......... .......... .......... .......... .......... .......... 749 TGCTTGGTTC TTCCATAGGT GTGCTCTCTA GCTTTTGTTT CTTGGTTCAA GGCTTGTTAC 8832 .......... .......... .......... .......... .......... .......... 749 TAACTCGAAC AAACTCCAAT ACATTTTCCT TGGTAGCTAA AATTTATCAA GTTACAGGGA 8892 .......... .......... .......... .......... .......... .......... 749 GAAAAAGAAA TGAGAAAAGA AGTCTTTGAT AAGATATTGC AGAGGTGGCT GTTTTTGTTG 8952 .......... .......... .......... .......... .......... .......... 749 CTTAATTGTC ATGTTATCGT GGGAGAACAT GGTCACATAG GAGGTGTAAC AAGTGGTGGT 9012 .......... .......... .......... .......... .......... .......... 749 TTAACTAGCT ATAGTGACTA TGTGCCTTCA CTGCTGCCTC TATTGGGTTC TGACCAAGGG 9072 .......... .......... .......... .......... .......... .......... 749 AGGTTGCTAA AATTAAGGTC AAAGATTTAT TGGAATGAAG AACAGTAATA AGAGTGAGTT 9132 .......... .......... .......... .......... .......... .......... 749 ATAGATGCAG AGGGTATTCC AGATCTATTT ATAGGCCTTG AATTCTTTTC CTCTTTATCT 9192 .......... .......... .......... .......... .......... .......... 749 CTTTCATTCG GATTCCACTT TTGCTTGTGC CAAGAAATGC CAAAGTCACT AGATGCACAT 9252 .......... .......... .......... .......... .......... .......... 749 GATTTACTCA ATTAAGTTCA TGGTATGTTT GGTGCAAGGC CGAAGACATG TTCTTCCCAG 9312 .......... .......... .......... .......... .......... .......... 749 GTAGTCTGGC AATGTTCTAG CAAAAAATTG TCCTAAATGC AACCCTATGA ATAGTTTAGT 9372 .......... .......... .......... .......... .......... .......... 749 GGCCCATGAT CCCCCTGTGC CTTGCCTATT ACTCATTATA TAATCATATG GTATAATTTT 9432 .......... .......... .......... .......... .......... .......... 749 AGAGCTATGT ATTTATTAAA TTTAAGTACA ACATGAAGCT AATTTGTATC AAATGACAGT 9492 | .......... .......... .......... .......... .......... .........T 750 TTCTCCTGGA CAGCCTGGCT CTATATCTGG TGATACGGAA GTTGTAACTC TTGTTGCAAG 9552 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCTCCTGGA CAGCCTGGCT CTATATCTGG TGATACGGAA GTTGTAACTC TTGTTGCAAG 810 TGGCCATGAT GCTAGTCTCA TAAATCAGAA AGAAGTTCTT TGGGGGGTAA GCAAACAGTC 9612 |||||||||| |||||||||| |||||||||| |||||||||| |||||| TGGCCATGAT GCTAGTCTCA TAAATCAGAA AGAAGTTCTT TGGGGG.... .......... 856 AATACCAATA ATTTAATCTT TATGTTTTTG GATTGGATTG TGTAGTAAAT ATCAGCTTTT 9672 .......... .......... .......... .......... .......... .......... 856 GACCACTTTA CCTGTCAATT TCTTGAGCTA TTTGATGAAT ATTCTTGTTT GTTGGTTAAC 9732 .......... .......... .......... .......... .......... .......... 856 TGACCATGAA ACAATTAAAT TGGCCAGCTG GAAGTCTTCC CATGCCAACG TATGGAAGAA 9792 .......... .......... .......... .......... .......... .......... 856 TGGATACCCC CCCCCCCCCC CCAAAAAAAA AAACAAGAAA CAATATAACC AATTCCTTTA 9852 .......... .......... .......... .......... .......... .......... 856 ACAGAACGTA GTGCAGTGCA TTGAGTTCTT GAGAGGTAGG GTAATTAGTG GGAAAATAAC 9912 .......... .......... .......... .......... .......... .......... 856 AATTCTTTGG ATTGCATTAC CTTTGAAGTA TGTGTTTCAG AGTATTGAGG ATAAAATCAC 9972 .......... .......... .......... .......... .......... .......... 856 ATTATGATCT AAAATTGTTC TATCAAGATC GGTTTTAGGA AAAAGAAAAG GTGGCCCTAT 10032 .......... .......... .......... .......... .......... .......... 856 ACAACATTAC CAGTTCCCAA AAAAGAAGAA GGGAAAAGGG CCCTGCAGTT CATCAAAGTA 10092 .......... .......... .......... .......... .......... .......... 856 ATTGGAGACC ATCTGGGTTG GGTCTGGGAC TAGTTCACCA CTATAAAACA TTTCTCTTAT 10152 .......... .......... .......... .......... .......... .......... 856 TCTATGTTTT ATAGCTATGG CTTATGGGTA TGGCAAAGCG GTCAATAAAG TGGGTAAACT 10212 .......... .......... .......... .......... .......... .......... 856 TATGGGAGAT CAGGGTTCAA GTTCCTGTAG AAACAAAGGC GCTAGGTGAT TTTTTCTCGT 10272 .......... .......... .......... .......... .......... .......... 856 CTACCTAAGC TTTGGTGGGC AGATACTGTG TATATACTGG TGGAAGGTAG TAGATACAGA 10332 .......... .......... .......... .......... .......... .......... 856 TTCATGCAAG TTTACTGAAC AACCCATATT AAATTGGAAA AAAAAATAAA ACGAAGAGAA 10392 .......... .......... .......... .......... .......... .......... 856 TGTGGAGCTG CAAGTTATAG ACAAGTGATA AGCTTACTCC TTCGTGTATA AACTAATATT 10452 .......... .......... .......... .......... .......... .......... 856 ATCTAAGGAG AGTTTATCAC TATCAATCCT TTGGGGTGGC CCAGTGGTTT GAGTTTGTGA 10512 .......... .......... .......... .......... .......... .......... 856 CTTCCATGTT GGAGGTCTCA AGTTCGAAAC CCCTTGCCAG CGAAAGCAAG GAGTTTGCCT 10572 .......... .......... .......... .......... .......... .......... 856 TCTGGGTCGA GCTCGTCGCA CCAGGTTTGT CTAGTGCGTG TTACCTCTCA TATGTGGTTT 10632 .......... .......... .......... .......... .......... .......... 856 GCGAGCTATT GCATAGGAGC GGGGTTTTTA CCCTGTGCGC ACCCAAAGGG TAGCGGCTGT 10692 .......... .......... .......... .......... .......... .......... 856 GGGTTTCCCT TGTCATAAAA AAAGAAGAAG AAGTATATCA CTATCAACTA GTTTTAGCCA 10752 .......... .......... .......... .......... .......... .......... 856 TTCTAGGTTC CATGTTTTGT AAGGATTGCT TGGGTTATGC TCTTGATCAC ACTTCCTCAA 10812 .......... .......... .......... .......... .......... .......... 856 TGTGGGTGGA ATACATGTTG GATTTGATTA AAATAAGATG GGTAATTAAA TGGGTGCAAA 10872 .......... .......... .......... .......... .......... .......... 856 CCTAGGAGAC AAGTCAAAAA TACTAGGTGA TTTCTTCTCA TCTGCCCAAG CTTGGTAGTT 10932 .......... .......... .......... .......... .......... .......... 856 GATTTATCCT GTAACTGTGT TGGTGGGAGA AAGCAAGTAC CTAACGGAAT ACTCAAGGTG 10992 .......... .......... .......... .......... .......... .......... 856 CACACAAGTT GTCATAAAAC ACCACCATTT TCAAGTTAAA AAAAATGTAT TATTTGACTT 11052 .......... .......... .......... .......... .......... .......... 856 TCATATGGCG AATGAAGAGG TCAGAGAGAC TAGAGTCAAA AGATAAAGAA TGTCGTGATG 11112 .......... .......... .......... .......... .......... .......... 856 GAGTTGTCCT TTCTTTCGCC TTAATCTTCA TCCTCTTTCT TTTCTTGTAA CTGAGGGTGA 11172 .......... .......... .......... .......... .......... .......... 856 GGTGATGCAT GGGTTTTCGA AAATTCTTTC GTTCATTATT TCATCTTCAC TTTAGGGAGT 11232 .......... .......... .......... .......... .......... .......... 856 GGGCTGAATA TAAAATGGGC TGAATATATA ATACTACAAA AATATTGTAT TAGGCCTGAT 11292 .......... .......... .......... .......... .......... .......... 856 GAAATATAGT GGTAATATAA CTTACCTTTC GCGGTGGAAC AGGCCAATCT TACATTCCAT 11352 .......... .......... .......... .......... .......... .......... 856 GTGTGTGTGT ATTGGAGCGG ACCAATCCAT ATTACAAAGC ATATTAATGA ATAAAAAACT 11412 .......... .......... .......... .......... .......... .......... 856 GAGGTGAAAT GATTATTTCC ATTTTTATTT AGAATCCCCT TAGCTGTGTT TGATATTCTA 11472 .......... .......... .......... .......... .......... .......... 856 TTTGTACCCA CATATCCTAG ACAGAATTTA ATGAGTCTGA GTGTCTGACA CTTCCGACAC 11532 .......... .......... .......... .......... .......... .......... 856 GGATCATACC CCCCGATTTT AGAAGAGTCT GTGTAATGTA GATCTTCCGT GTTTTAAAAT 11592 .......... .......... .......... .......... .......... .......... 856 TTATCCCCAG GAGATGTGTT AATAATTTAT TTTGCAGATG CTTGAAGATT CTTTAGAAGA 11652 ||| |||||||||| |||||||||| .......... .......... .......... .......ATG CTTGAAGATT CTTTAGAAGA 879 ACGGTTAGAA AAGACTGGAG GTTCTGTTCC AGATTCGGAA AAGTTTGATG GAGATCCGAA 11712 ||||||||| ||||| |||| |||||||||| |||||||||| |||||||||| |||||||||| CCGGTTAGAA AAGACAGGAG GTTCTGTTCC AGATTCGGAA AAGTTTGATG GAGATCCGAA 939 GGAAGGAGAA GTGGAAGAAA ACAAGGTATT GAATTTCTAT CAGTTCATTT CCCACTTGAT 11772 |||||||||| |||||||||| ||||| GGAAGGAGAA GTGGAAGAAA ACAAG..... .......... .......... .......... 964 CATATTCATA AATATTTCGC ACTTAATTAT CTCATCTTTC CTTAGTGGTG TAAATTTTTT 11832 .......... .......... .......... .......... .......... .......... 964 TTGGTGGACA TCCTTCCACA TTTACTTTTG TCGAAAAAGT GACATCCTTC CACATTTATT 11892 .......... .......... .......... .......... .......... .......... 964 GTTTTTATTT TGCCCTTTTT TCAGAAGAAG TCAATTGAAG GTGGTAAACA TGGTGCACCT 11952 |||||| |||||||||| |||||||||| |||||||||| .......... .......... ....AAGAAG TCAATTGAAG GTGGTAAACA TGGTGCACCT 1000 CTTAAAAAAC TAAAGAAGGA CAAAGTTGGG ATTGCAACAG GGAAATCTTC TCGTACAGAG 12012 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTAAAAAAC TAAAGAAGGA CAAAGTTGGG ATTGCAACAG GGAAATCTTC TCGTACAGAG 1060 AGCAGCACAG TGACAACTGC ACCACGTGTC AAACCGGAAC TTGCTTTACC TGCTATGTAC 12072 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCAGCACAG TGACAACTGC ACCACGTGTC AAACCGGAAC TTGCTTTACC TGCTATGTAC 1120 TCCTCAAACC TATTATCTTA CTTACCAAAA GAAAAAGAGA GGGCCCTATT GTGTTTTTCT 12132 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCCTCAAACC TATTATCTTA CTTACCAAAA GAAAAAGAGA GGGCCCTATT GTGTTTTTCT 1180 CTCCCACGAC ATCATCCCTG TACTTGGAAA AGTCATTCTT GTTGGATGTC ATAATTTTAT 12192 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCCCACGAC ATCATCCCTG TACTTGGAAA AGTCATTCTT GTTGGATGTC ATAATTTTAT 1240 TTGAAATACA GTCATCATGA TCCATTAGAA AACATCAAGT GAAACGGCTA TACAAAGAAG 12252 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGAAATACA GTCATCATGA TCCATTAGAA AACATCAAGT GAAACGGCTA TACAAAGAAG 1300 TTGCATAAAA AAGGAAA 12269 |||||||||| || ||| TTGCATAAAA AAAAAAA 1317 hqPGS_C06HBa0046G10.1-4+_SGN-U323272+ (3133 3477,4651 4732,6727 6805,6883 6980,7066 7122,7697 7784,9492 9598,11630 11737,11917 12269) ******************************************************************************** EST sequence 3 +strand 605 n (File: SGN-U315608+) 1 AAAAGTATAC TGGATCCACC AAAGATGAAG GAGATAGTNG TATCAGTTAT AACATGCATG 61 ATCTAGAGTA ACGATGTGAA AGTGAGACAT TCAAATCACT TTACCAGATA CTAACATAAC 121 GCTAACAGGT AAAGTTAAAT TGAGGAGTAG TCCATTAATG TCGTTAACCT TGCAAGCAGC 181 TGTCACGCGT ATTCTATTTT GCCTCTTCAT ACTCGGTCAC CCTTTTCAGA ACTAACTCTT 241 ACCGGTTTTT AACTGCACAT TACTTACTTG TCCAGCATCA ACTTGTGAAG TTACGGATGG 301 AGGTGGTTCA GAACATGCCC TCAAGACAGC TTCATTTATA TAAAGCTAAG AGAATGTTAC 361 CCTTCGGGGT GGCCCAGTGG TTTGAGCTTG GGACTTCCAT GTAGGAGGTC TCAAGTTCGA 421 AACCCCTTGC CAGTGAAAGC AAGGGGTTTG CCTTTTGATC GAGCTCGTCG CACCAAGCTT 481 GCCTAGTGCG GGTTACCTCT CCTATGTGGT TTGCGAGCTA TTGTATAGGA GCGAGGGATA 541 TACCCTGTGT GCATCCAAAG GGTAGCGTCT GCGAGTTTCC CTTGTCATAA AAAAAAAAAA 601 AAAAA Predicted gene structure (within gDNA segment 5635 to 12882): Exon 1 6727 6746 ( 20 n); cDNA 322 339 ( 18 n); score: 0.650 Intron 1 6747 10377 (3631 n); Pd: 0.900 (s: 0), Pa: 0.000 (s: 0) Exon 2 10378 10401 ( 24 n); cDNA 340 363 ( 24 n); score: 0.750 Intron 2 10402 10482 ( 81 n); Pd: 0.427 (s: 0), Pa: 0.000 (s: 0.92) Exon 3 10483 10724 ( 242 n); cDNA 364 604 ( 241 n); score: 0.888 MATCH C06HBa0046G10.1-4+ SGN-U315608+ 0.888 286 0.473 C PGS_C06HBa0046G10.1-4+_SGN-U315608+ (6727 6746,10378 10401,10483 10724) Alignment (genomic DNA sequence = upper lines): CATGAGTTGC TTCGTGTTTT ATATCCTGTA TTTATTCATT GTTTCATGGA ACTTGTCGCT 6786 || || || ||| | || | CAAGA-CAGC TTCAT-TTAT .......... .......... .......... .......... 339 AGAGGTTATA TTCAAGAAGG TATACTTTGT CAGTTATGTT TTGGTTGTAT TTTGATATTT 6846 .......... .......... .......... .......... .......... .......... 339 GTGAGAGAAT TTTTAACACA ATTCTTTTAT TTCCAGCACG AGCCTTTTTC AATAGTTACC 6906 .......... .......... .......... .......... .......... .......... 339 GTGAAGACCA TGAGATGACG CATCTGCGTG ATCTTCAGAA GTTAGAAGGC GTCCTCTCAC 6966 .......... .......... .......... .......... .......... .......... 339 CTTCCCATCT AGAGGTACAT CAATATCCTA GCAACTGTGT GGATGACCTT TTCCATGCTT 7026 .......... .......... .......... .......... .......... .......... 339 AAGTGTGTCA TAGATCACTA AACTTATTCC GAAATGCAGG AAATGGAATT TGCTCATTCT 7086 .......... .......... .......... .......... .......... .......... 339 ATACGGGTGA GCAAAGTGAA CATTAAGATG TGTCAGGTAT TCTCTTGATC CTTTTGCTTC 7146 .......... .......... .......... .......... .......... .......... 339 CTCTGGTTGA ATTTTTCTGC TACTATAGTG CACACTAATG TCTCAACTGT GAAAGCCAAG 7206 .......... .......... .......... .......... .......... .......... 339 TGTGTCGGGG TTTGTTAGCA ATTGGTGACA AATGCATATC GAGTTAGTAG TTACAAAGGA 7266 .......... .......... .......... .......... .......... .......... 339 GGAAAAGAAA CTAATGTGAT ATTTCACTTT AGAGTGCATT ATCTTTCATT TCCTTCTCTT 7326 .......... .......... .......... .......... .......... .......... 339 GACCACTTAT TTTGCTGTGG AACTTCAACT TTTTGACAAA AAATCCACCT CTTTCCAAAT 7386 .......... .......... .......... .......... .......... .......... 339 CTTTTCTTTT GAAGCTGAAC TTCTATTAGT TATGTTGATG AAATAGCAAA CACTGGTTCA 7446 .......... .......... .......... .......... .......... .......... 339 TTTTGTAGGT TTGTTGGAAT TAACTACAAC ATTTAGTCTA TTGTTCTCAT GCCATGGATC 7506 .......... .......... .......... .......... .......... .......... 339 TTATCACCAT GTATATTAAA GGAACAATCA TTTGTCTAAT GGTTTTTCTA GTTTGGTGGA 7566 .......... .......... .......... .......... .......... .......... 339 TTTACGTGCA GTTTGATTAC TGTTTTTTGG TCAATATACA TGTCTGGCAC CATTTGATTA 7626 .......... .......... .......... .......... .......... .......... 339 CTTTTTACCA CGCATACCTT TAGACTTAAC TGGATTAGCC TTTTGATTTG CTTATTTTAC 7686 .......... .......... .......... .......... .......... .......... 339 TCTGAAACAG TACTCCTATG ACCTTCTGTT GCAATACTTG CACAAGACAG AATCTATTAC 7746 .......... .......... .......... .......... .......... .......... 339 AATGCTTGGG ATCATCAATG AGCGCATTAA TTTTCAAGGT GCACTTCCCA TTTTCGCAGT 7806 .......... .......... .......... .......... .......... .......... 339 TGCTTTCAAC CTTTCAATTT GCAACTATGT TAAATTGACC ATTTTAATTT AGCGTAATCT 7866 .......... .......... .......... .......... .......... .......... 339 TTTTTGATTA AGTAAAGTAT TTCATTAAGA AAACAAGGCC GAGATGACTG TAAACAAGAG 7926 .......... .......... .......... .......... .......... .......... 339 ATATACCCTA AAAGAAGAAA CCTACAAAAA TATGGTTCAC TCTAAAATAC ACCCAATCCT 7986 .......... .......... .......... .......... .......... .......... 339 CTATACTAAT AGGAACGACA TGGTGCACCA AAAGAAAATA GGGAGTGGAG ACTGCTACTT 8046 .......... .......... .......... .......... .......... .......... 339 AGTTGAGCAA GGCTCATCTC CATTCCTTCA AAAGCCCCCA TATTTCTCTC TCCAAATGAC 8106 .......... .......... .......... .......... .......... .......... 339 CCACGTTAAA GCAAGAGAAG TAACATTCCA AGCCTTTTGC CTTCTTCTCC TGGCACCAGT 8166 .......... .......... .......... .......... .......... .......... 339 TGTCGAACTA AACATCAACT CTTTCACGGA TCTTGGCATC AGCCCTGAAA TGCCGAACCA 8226 .......... .......... .......... .......... .......... .......... 339 TCTAAAGATA CCCTACCATA ACCTCATTGC TAGATTGCAA TGTAGCATAA TATGATCCAC 8286 .......... .......... .......... .......... .......... .......... 339 GATCTCACCT GCCTCCTTAC TAAGGAAACA CCAACTAATA CAGACAACTT TCCATTTCCT 8346 .......... .......... .......... .......... .......... .......... 339 AACATTCTCC GCCGTCAAAA TCACCCCTCT ATAAACTAAC CAAGTGAAGA AGCACCCCTT 8406 .......... .......... .......... .......... .......... .......... 339 CCTTGGAATC CTAGGAATAT CGTAAATATT TATTCCACCA TGAAGTGTTT AGGAAGAAGC 8466 .......... .......... .......... .......... .......... .......... 339 AGTTACATCT TTCCATTTAT ATTGGTATGA TAGTGAAACC ATATGAGAAG GAAGAAGAGA 8526 .......... .......... .......... .......... .......... .......... 339 AATGTCTTTT CCTTGACCAT TGTCCTTTAG AACAAATGCT CATCATTACA TCCACTGAAT 8586 .......... .......... .......... .......... .......... .......... 339 AAAGACGGGG AAAGGAAAAG CGTTCCAATT TAAATTCAAC TTCTTTCTGT CAGATCATTG 8646 .......... .......... .......... .......... .......... .......... 339 TTTATTTTGT CCCTCCATGA TCACTTAACC ATCTCAATCC TCTGGAACCA AATTACATGA 8706 .......... .......... .......... .......... .......... .......... 339 CTAGAGGGGA ACTGTCATGT TTATTATAAA TAGTGGTGAA TTTTACCATA ATTACTTCCT 8766 .......... .......... .......... .......... .......... .......... 339 TTATATTGCT TGGTTCTTCC ATAGGTGTGC TCTCTAGCTT TTGTTTCTTG GTTCAAGGCT 8826 .......... .......... .......... .......... .......... .......... 339 TGTTACTAAC TCGAACAAAC TCCAATACAT TTTCCTTGGT AGCTAAAATT TATCAAGTTA 8886 .......... .......... .......... .......... .......... .......... 339 CAGGGAGAAA AAGAAATGAG AAAAGAAGTC TTTGATAAGA TATTGCAGAG GTGGCTGTTT 8946 .......... .......... .......... .......... .......... .......... 339 TTGTTGCTTA ATTGTCATGT TATCGTGGGA GAACATGGTC ACATAGGAGG TGTAACAAGT 9006 .......... .......... .......... .......... .......... .......... 339 GGTGGTTTAA CTAGCTATAG TGACTATGTG CCTTCACTGC TGCCTCTATT GGGTTCTGAC 9066 .......... .......... .......... .......... .......... .......... 339 CAAGGGAGGT TGCTAAAATT AAGGTCAAAG ATTTATTGGA ATGAAGAACA GTAATAAGAG 9126 .......... .......... .......... .......... .......... .......... 339 TGAGTTATAG ATGCAGAGGG TATTCCAGAT CTATTTATAG GCCTTGAATT CTTTTCCTCT 9186 .......... .......... .......... .......... .......... .......... 339 TTATCTCTTT CATTCGGATT CCACTTTTGC TTGTGCCAAG AAATGCCAAA GTCACTAGAT 9246 .......... .......... .......... .......... .......... .......... 339 GCACATGATT TACTCAATTA AGTTCATGGT ATGTTTGGTG CAAGGCCGAA GACATGTTCT 9306 .......... .......... .......... .......... .......... .......... 339 TCCCAGGTAG TCTGGCAATG TTCTAGCAAA AAATTGTCCT AAATGCAACC CTATGAATAG 9366 .......... .......... .......... .......... .......... .......... 339 TTTAGTGGCC CATGATCCCC CTGTGCCTTG CCTATTACTC ATTATATAAT CATATGGTAT 9426 .......... .......... .......... .......... .......... .......... 339 AATTTTAGAG CTATGTATTT ATTAAATTTA AGTACAACAT GAAGCTAATT TGTATCAAAT 9486 .......... .......... .......... .......... .......... .......... 339 GACAGTTTCT CCTGGACAGC CTGGCTCTAT ATCTGGTGAT ACGGAAGTTG TAACTCTTGT 9546 .......... .......... .......... .......... .......... .......... 339 TGCAAGTGGC CATGATGCTA GTCTCATAAA TCAGAAAGAA GTTCTTTGGG GGGTAAGCAA 9606 .......... .......... .......... .......... .......... .......... 339 ACAGTCAATA CCAATAATTT AATCTTTATG TTTTTGGATT GGATTGTGTA GTAAATATCA 9666 .......... .......... .......... .......... .......... .......... 339 GCTTTTGACC ACTTTACCTG TCAATTTCTT GAGCTATTTG ATGAATATTC TTGTTTGTTG 9726 .......... .......... .......... .......... .......... .......... 339 GTTAACTGAC CATGAAACAA TTAAATTGGC CAGCTGGAAG TCTTCCCATG CCAACGTATG 9786 .......... .......... .......... .......... .......... .......... 339 GAAGAATGGA TACCCCCCCC CCCCCCCCAA AAAAAAAAAC AAGAAACAAT ATAACCAATT 9846 .......... .......... .......... .......... .......... .......... 339 CCTTTAACAG AACGTAGTGC AGTGCATTGA GTTCTTGAGA GGTAGGGTAA TTAGTGGGAA 9906 .......... .......... .......... .......... .......... .......... 339 AATAACAATT CTTTGGATTG CATTACCTTT GAAGTATGTG TTTCAGAGTA TTGAGGATAA 9966 .......... .......... .......... .......... .......... .......... 339 AATCACATTA TGATCTAAAA TTGTTCTATC AAGATCGGTT TTAGGAAAAA GAAAAGGTGG 10026 .......... .......... .......... .......... .......... .......... 339 CCCTATACAA CATTACCAGT TCCCAAAAAA GAAGAAGGGA AAAGGGCCCT GCAGTTCATC 10086 .......... .......... .......... .......... .......... .......... 339 AAAGTAATTG GAGACCATCT GGGTTGGGTC TGGGACTAGT TCACCACTAT AAAACATTTC 10146 .......... .......... .......... .......... .......... .......... 339 TCTTATTCTA TGTTTTATAG CTATGGCTTA TGGGTATGGC AAAGCGGTCA ATAAAGTGGG 10206 .......... .......... .......... .......... .......... .......... 339 TAAACTTATG GGAGATCAGG GTTCAAGTTC CTGTAGAAAC AAAGGCGCTA GGTGATTTTT 10266 .......... .......... .......... .......... .......... .......... 339 TCTCGTCTAC CTAAGCTTTG GTGGGCAGAT ACTGTGTATA TACTGGTGGA AGGTAGTAGA 10326 .......... .......... .......... .......... .......... .......... 339 TACAGATTCA TGCAAGTTTA CTGAACAACC CATATTAAAT TGGAAAAAAA AATAAAACGA 10386 ||||| | | .......... .......... .......... .......... .......... .ATAAAGCTA 348 AGAGAATGTG GAGCTGCAAG TTATAGACAA GTGATAAGCT TACTCCTTCG TGTATAAACT 10446 ||||||||| || AGAGAATGTT ACCCT..... .......... .......... .......... .......... 363 AATATTATCT AAGGAGAGTT TATCACTATC AATCCTTTGG GGTGGCCCAG TGGTTTGAGT 10506 | || |||||||||| ||||||||| .......... .......... .......... ......TCGG GGTGGCCCAG TGGTTTGAGC 387 TTGTGACTTC CATGTTGGAG GTCTCAAGTT CGAAACCCCT TGCCAGCGAA AGCAAGGAGT 10566 ||| |||||| ||||| |||| |||||||||| |||||||||| |||||| ||| ||||||| || TTGGGACTTC CATGTAGGAG GTCTCAAGTT CGAAACCCCT TGCCAGTGAA AGCAAGGGGT 447 TTGCCTTCTG GGTCGAGCTC GTCGCACCAG GTTTGTCTAG TGCGTGTTAC CTCTCATATG 10626 ||||||| | | |||||||| ||||||||| | ||| |||| |||| ||||| ||||| |||| TTGCCTT-TT GATCGAGCTC GTCGCACCAA GCTTGCCTAG TGCGGGTTAC CTCTCCTATG 506 TGGTTTGCGA GCTATTGCAT AGGAGCGGGG TTTTTACCCT GTGCGCACCC AAAGGGTAGC 10686 |||||||||| ||||||| || ||||||| || | |||||| ||| ||| || |||||||||| TGGTTTGCGA GCTATTGTAT AGGAGCGAGG GATATACCCT GTGTGCATCC AAAGGGTAGC 566 GGCTGTGGGT TTCCCTTGTC ATAAAAAAAG AAGAAGAA 10724 | ||| | || |||||||||| ||||||||| || || || GTCTGCGAGT TTCCCTTGTC ATAAAAAAAA AAAAAAAA 604 hqPGS_C06HBa0046G10.1-4+_SGN-U315608+ (10378 10401,10483 10724) ******************************************************************************** EST sequence 4 +strand 1221 n (File: SGN-U315609+) 1 AACGATCATT TTTTCTTTTG ATGATATGCT GAATTATTTT AGTTGAAATG ATGATTTTAG 61 GGAAGTTTGC TCTGCTTAAT TATGATGAAC CCTTCGGGGT GGCCCAGTGG TTTGAGTTTG 121 GATTTTCCAT GCGGGAGGTC TCAAGTTCGA AACTCCTTGC CAGGGAAAGC AAGGGGTTTG 181 CCTTTTGGGT CGAGCTTGTC GCTCCAGGCT TGTCTAGTGC GGTTACCTCT CCTATGTGGT 241 TACCTCTCCT ATGTGGTTTG CGAGTTATTG CATAGGAGTG GGGGTTCTAC CCTGTGCGCA 301 TACAAAGGGT AGCGGCTGCG GGTTTCCCTT GTCATAAAAA TAAATAAATT ATGATGATAC 361 AGTTCTCTTC TATGTATCCT GTCAGGCATT AGACCTTGGA AGAGGTGTGA ATCCAGGAAG 421 ATATATTGTT GGAGAGATCT GGGAAGAGCT TGCTAAAGCA AAGTACATGG AGTGGGAGCA 481 TGAATCTACA AGGCGCTCCT GGGAGCTTCA GAACTTGAAA GAATCATGTG AGTCAGCTCT 541 CAAGGAGAGA CATATGCTTG ACAGTTCTCA GACAGAAGGG TTCAAAGATG AAAAATCAAC 601 GGCGCTTTTT AAGCAACTGA AAGCTCTAGG TAAGGTTTTC GTGAAAGCTG CAGCAGATGA 661 TACTCCAACT GAGGTTCCCG ATTACTTGTG TTGTAAAATT ACTCTTGATA TTTTTCGTGA 721 CCCTGTTATT ACTCCGAGTG GGTTTACATA TGAGCGGGCT GTGATCCTTG AGCATTTGCA 781 AAAGGTGGGA AAATTTGATC CAATCACAAG AGAACCACTT TTGCCGTCCC AGTTGGTGCC 841 AAACCTGGCC ATAAAAGAAT CTGTACGGGC GTTTTTGGAT AGGCATGGCT GGGCATATAG 901 GATATAGTAA ACTTTTCGTT TGGCGTACAG GACGCATGTG CTTGGTGGTG CTAGTGAAAC 961 CAAGAACAGA ACCATAGGGG CGGAGGACAC ATCTTTTGGT GGTAGTCATC TGCCTAACTG 1021 CTTCCTATAT AGTTCAGTAT TAACATGGTT TCCTGTGTAA TTCATGTTAA CCTCAGTTGT 1081 ACAGTGTAGT GCTTTTGTAC ATTAATTGTA CAGCAAACCA TCACGAGTAT TTTGTAAGAT 1141 GTTACATTGA TATACTGTTG ATCTAACGAA ACAATGGTTT TTTGATAAAA AAAAAAAAAA 1201 AAAAAAACTC GAGGGGGGCC C Predicted gene structure (within gDNA segment 8935 to 21333): Exon 1 10465 10724 ( 260 n); cDNA 76 348 ( 273 n); score: 0.719 Intron 1 10725 18062 (7338 n); Pd: 0.762 (s: 0.86), Pa: 0.990 (s: 0) Exon 2 18063 18081 ( 19 n); cDNA 349 367 ( 19 n); score: 0.632 Intron 2 18082 19532 (1451 n); Pd: 0.000 (s: 0), Pa: 0.611 (s: 0) Exon 3 19533 19567 ( 35 n); cDNA 368 399 ( 32 n); score: 0.600 Intron 3 19568 20098 ( 531 n); Pd: 0.941 (s: 0), Pa: 0.000 (s: 0) Exon 4 20099 20106 ( 8 n); cDNA 400 407 ( 8 n); score: 0.875 Intron 4 20107 20190 ( 84 n); Pd: 0.742 (s: 0), Pa: 0.000 (s: 0) Exon 5 20191 20198 ( 8 n); cDNA 408 415 ( 8 n); score: 0.875 PPA cDNA 1185 1207 MATCH C06HBa0046G10.1-4+ SGN-U315609+ 0.719 330 0.270 C PGS_C06HBa0046G10.1-4+_SGN-U315609+ (10465 10724,18063 18081,19533 19567,20099 20106,20191 20198) Alignment (genomic DNA sequence = upper lines): TTTATCACTA TCAATCCTTT GGGGTGGCCC AGTGGTTTGA GTTTGTGACT TCCATGTTGG 10524 || || | | | || |||| |||||||||| |||||||||| ||||| | |||||| || TTAATTATGA TGAACCCTTC GGGGTGGCCC AGTGGTTTGA GTTTGGATTT TCCATGCGGG 135 AGGTCTCAAG TTCGAAACCC CTTGCCAGCG AAAGCAAGGA GTTTGCCTTC TGGGTCGAGC 10584 |||||||||| |||||||| | |||||||| | ||||||||| ||||||||| |||||||||| AGGTCTCAAG TTCGAAACTC CTTGCCAGGG AAAGCAAGGG GTTTGCCTTT TGGGTCGAGC 195 TCGTCGCACC AGGTTTGTCT AGTGC-G--- ---------T ---GTTACCT CTCATATGTG 10628 | ||||| || ||| |||||| ||||| | | ||||||| ||| |||||| TTGTCGCTCC AGGCTTGTCT AGTGCGGTTA CCTCTCCTAT GTGGTTACCT CTCCTATGTG 255 GTTTGCGAGC TATTGCATAG GAGCGGGGTT TTTACCCTGT GCGCACCCAA AGGGTAGCGG 10688 ||||||||| |||||||||| ||| |||| | | |||||||| ||||| ||| |||||||||| GTTTGCGAGT TATTGCATAG GAGTGGGGGT TCTACCCTGT GCGCATACAA AGGGTAGCGG 315 CTGTGGGTTT CCCTTGTCAT AAAAAAAGAA GAAGAAGTAT ATCACTATCA ACTAGTTTTA 10748 ||| |||||| |||||||||| ||||| | || | || CTGCGGGTTT CCCTTGTCAT AAAAATA-AA -TA-AA.... .......... .......... 348 GCCATTCTAG GTTCCATGTT TTGTAAGGAT TGCTTGGGTT ATGCTCTTGA TCACACTTCC 10808 .......... .......... .......... .......... .......... .......... 348 TCAATGTGGG TGGAATACAT GTTGGATTTG ATTAAAATAA GATGGGTAAT TAAATGGGTG 10868 .......... .......... .......... .......... .......... .......... 348 CAAACCTAGG AGACAAGTCA AAAATACTAG GTGATTTCTT CTCATCTGCC CAAGCTTGGT 10928 .......... .......... .......... .......... .......... .......... 348 AGTTGATTTA TCCTGTAACT GTGTTGGTGG GAGAAAGCAA GTACCTAACG GAATACTCAA 10988 .......... .......... .......... .......... .......... .......... 348 GGTGCACACA AGTTGTCATA AAACACCACC ATTTTCAAGT TAAAAAAAAT GTATTATTTG 11048 .......... .......... .......... .......... .......... .......... 348 ACTTTCATAT GGCGAATGAA GAGGTCAGAG AGACTAGAGT CAAAAGATAA AGAATGTCGT 11108 .......... .......... .......... .......... .......... .......... 348 GATGGAGTTG TCCTTTCTTT CGCCTTAATC TTCATCCTCT TTCTTTTCTT GTAACTGAGG 11168 .......... .......... .......... .......... .......... .......... 348 GTGAGGTGAT GCATGGGTTT TCGAAAATTC TTTCGTTCAT TATTTCATCT TCACTTTAGG 11228 .......... .......... .......... .......... .......... .......... 348 GAGTGGGCTG AATATAAAAT GGGCTGAATA TATAATACTA CAAAAATATT GTATTAGGCC 11288 .......... .......... .......... .......... .......... .......... 348 TGATGAAATA TAGTGGTAAT ATAACTTACC TTTCGCGGTG GAACAGGCCA ATCTTACATT 11348 .......... .......... .......... .......... .......... .......... 348 CCATGTGTGT GTGTATTGGA GCGGACCAAT CCATATTACA AAGCATATTA ATGAATAAAA 11408 .......... .......... .......... .......... .......... .......... 348 AACTGAGGTG AAATGATTAT TTCCATTTTT ATTTAGAATC CCCTTAGCTG TGTTTGATAT 11468 .......... .......... .......... .......... .......... .......... 348 TCTATTTGTA CCCACATATC CTAGACAGAA TTTAATGAGT CTGAGTGTCT GACACTTCCG 11528 .......... .......... .......... .......... .......... .......... 348 ACACGGATCA TACCCCCCGA TTTTAGAAGA GTCTGTGTAA TGTAGATCTT CCGTGTTTTA 11588 .......... .......... .......... .......... .......... .......... 348 AAATTTATCC CCAGGAGATG TGTTAATAAT TTATTTTGCA GATGCTTGAA GATTCTTTAG 11648 .......... .......... .......... .......... .......... .......... 348 AAGAACGGTT AGAAAAGACT GGAGGTTCTG TTCCAGATTC GGAAAAGTTT GATGGAGATC 11708 .......... .......... .......... .......... .......... .......... 348 CGAAGGAAGG AGAAGTGGAA GAAAACAAGG TATTGAATTT CTATCAGTTC ATTTCCCACT 11768 .......... .......... .......... .......... .......... .......... 348 TGATCATATT CATAAATATT TCGCACTTAA TTATCTCATC TTTCCTTAGT GGTGTAAATT 11828 .......... .......... .......... .......... .......... .......... 348 TTTTTTGGTG GACATCCTTC CACATTTACT TTTGTCGAAA AAGTGACATC CTTCCACATT 11888 .......... .......... .......... .......... .......... .......... 348 TATTGTTTTT ATTTTGCCCT TTTTTCAGAA GAAGTCAATT GAAGGTGGTA AACATGGTGC 11948 .......... .......... .......... .......... .......... .......... 348 ACCTCTTAAA AAACTAAAGA AGGACAAAGT TGGGATTGCA ACAGGGAAAT CTTCTCGTAC 12008 .......... .......... .......... .......... .......... .......... 348 AGAGAGCAGC ACAGTGACAA CTGCACCACG TGTCAAACCG GAACTTGCTT TACCTGCTAT 12068 .......... .......... .......... .......... .......... .......... 348 GTACTCCTCA AACCTATTAT CTTACTTACC AAAAGAAAAA GAGAGGGCCC TATTGTGTTT 12128 .......... .......... .......... .......... .......... .......... 348 TTCTCTCCCA CGACATCATC CCTGTACTTG GAAAAGTCAT TCTTGTTGGA TGTCATAATT 12188 .......... .......... .......... .......... .......... .......... 348 TTATTTGAAA TACAGTCATC ATGATCCATT AGAAAACATC AAGTGAAACG GCTATACAAA 12248 .......... .......... .......... .......... .......... .......... 348 GAAGTTGCAT AAAAAAGGAA AATTATGAAG GATGAGGAAA ATATGATTGA GCTCAATCCT 12308 .......... .......... .......... .......... .......... .......... 348 TTCTGTGGTG TCATACTCAT AGTACTCCCT CCATTTCAAT TTATTTGACC TTTTTTCCTC 12368 .......... .......... .......... .......... .......... .......... 348 TCTAGTCCAT TGAAAAAAGA ATGACCCTTT CCTTTTTATA GCAACTTCTA AATTTTACTT 12428 .......... .......... .......... .......... .......... .......... 348 CCCAAGTTGT ATGTTTAAGA CTACAAGAAT AAAGGGCATT TCGGTACATT TGACAGATCT 12488 .......... .......... .......... .......... .......... .......... 348 TTGATTTTAA ACCACAAGAT TTAAAGATCT TTATTTTATT AAACTCTGTG CCAAGTCAAA 12548 .......... .......... .......... .......... .......... .......... 348 ACAAGAATTT GAAATGGAGG GAGTGTATTT TTTTAGATAA TTAAATATCT TTAATAAAGT 12608 .......... .......... .......... .......... .......... .......... 348 CATACTCGGT ATATCTTCTT ACATTCATCC ATATATTGCA TTATGTTTCT TATCTCTCTG 12668 .......... .......... .......... .......... .......... .......... 348 TGTGTGTGGG GGGGGGGGGG TTGGATCTTG GATCATCTTA ACTGAAAGAA AATTTGTCAC 12728 .......... .......... .......... .......... .......... .......... 348 AGACCTGTAG AGGTAGAACT TTCTATTCTG GAAGACTTGA GGAACCGCGT ACAGTTGAGT 12788 .......... .......... .......... .......... .......... .......... 348 AATGCATCAT TGCCCTCTGT TAGCTTCTAT ACATTTGTTA ATACACACAA TGGGTAAGTT 12848 .......... .......... .......... .......... .......... .......... 348 TTCATGATCT TGAATCTTTT AAGTGTGGAA TTCGTATTCA GGAACATATC CTAATCTCAG 12908 .......... .......... .......... .......... .......... .......... 348 TGAGTTAATC TGTAAATGTC TGTAGACTAA ACTGTGCATC AATATCACAT GATGGATCAC 12968 .......... .......... .......... .......... .......... .......... 348 TAGTGGCTGG TGGATTCTCA GATTCATCTG TGAAGGTGCT TGTAGCTTCT GAATGACGTT 13028 .......... .......... .......... .......... .......... .......... 348 GAAATTATGT TGTCACAAAT TACAGTATCT GTTGATCCTT GATCATCTTC TTATCTTTTT 13088 .......... .......... .......... .......... .......... .......... 348 TTTGGAACTG GTAACTTTGA TCATCTTCTA ATCTAAGTCC CCCATTTTAC AGGTCTGGGA 13148 .......... .......... .......... .......... .......... .......... 348 CATGGCAAAG CTTGGGGAAC AAACTGGTCC ATGTAAGTCC AATATGATGG TCCTCAGCTC 13208 .......... .......... .......... .......... .......... .......... 348 CTTTTCAATG TATTGTTATT TCATGTTTCA AGATGTTTTA GTGAATAGAG GTTGAAAAGG 13268 .......... .......... .......... .......... .......... .......... 348 TCCCTTTTAA TACTACTCCT AGTCACAGTA TATCTCGCCA GGACAGCAAG AAAGATTTAT 13328 .......... .......... .......... .......... .......... .......... 348 TCTTTGCTGC TTTAATTTAT TTGATAAGTA GATAAATTTT ATTTCACTAA GAAACTGCAC 13388 .......... .......... .......... .......... .......... .......... 348 TAGGGTTGTG AAGTTTGTTA CATCAGAAAT TTGCTTAGCA GAAACATGAT TAGTTATGAA 13448 .......... .......... .......... .......... .......... .......... 348 GGTTTCTCGA CTGAACATAT AAATGCAGCT TTACATTTCT GATGGAAGTA TTTCTTGAAC 13508 .......... .......... .......... .......... .......... .......... 348 TCCTTGCATT TTTCAATTAG GTAAATAATT TTAATCGAAA AGTCTCCTGT ATACAATGCA 13568 .......... .......... .......... .......... .......... .......... 348 GTACACAAAA AATAACTATA TCAGAATATG ATTCTAACAA ACAATATCCT ATTGTTTTTT 13628 .......... .......... .......... .......... .......... .......... 348 TTTTGGAGAA AGTATCAGAA TATGATTCTA ACAAACAATA TCCTACTGTT TTTTGTTTTT 13688 .......... .......... .......... .......... .......... .......... 348 TTTGAGAAAG TAACATTTGT ATTAAAGAAA CTTGGTAAAA AGGTTGTGCT GGTAACCATG 13748 .......... .......... .......... .......... .......... .......... 348 TGCAGCTTCC AAAAGTATTG GGAATCCTTT TACTTCTCAC TAGGGATCTA TCATGTCATA 13808 .......... .......... .......... .......... .......... .......... 348 TTGGATTCTA CATCATTTAC ATAATCTCTT TGCACCAAAA ACATAAACAA CACAAAACAA 13868 .......... .......... .......... .......... .......... .......... 348 TTCATCTCTA TCATTTGAAT GAGGCTATTG CTGCCTTCAA AACATCTAGG GTTCCTTTCC 13928 .......... .......... .......... .......... .......... .......... 348 TTCAAAGCTG TCAACCAAAT GCTGGAGTGA GATCTCCCTG ATTGTGCCAA CATCTCAGTA 13988 .......... .......... .......... .......... .......... .......... 348 AATCAGCTGT AGTTCTTGGC ACTGTCCATC CGAGTCCAAC TATGCTTGGG AAGAGTTGCT 14048 .......... .......... .......... .......... .......... .......... 348 ACAATTGAGC AGTTACACCA AGATGTAAGA ACAGGTGTCT GTTAGACTCT TTAAGTCTGC 14108 .......... .......... .......... .......... .......... .......... 348 ACAGTATTAC TAACATCTGG TGCTCAACTG GAATCCTCTC TTCTTTAAAT TTATCGAGTT 14168 .......... .......... .......... .......... .......... .......... 348 AGACTGGCCT ATAAGAACTT CACTAATGCA CCAAAAAGAA TCAAGGGATT GAAAAGCTAT 14228 .......... .......... .......... .......... .......... .......... 348 TCCTTGAGTC TACATACTCG TTTTCTATCT CTTAAAAAGT CTTGAACCAC TCCTATAATG 14288 .......... .......... .......... .......... .......... .......... 348 TTGAAGTGAT CAATAATTGA GAATTTTGTC ACATGTCTTG TTATGACGCT CATCATGTAT 14348 .......... .......... .......... .......... .......... .......... 348 GCTAGTGGTT TAGATACTCC TAAGGAAAAG GCAAACATTT TGAATCCAAA TGTTAACATG 14408 .......... .......... .......... .......... .......... .......... 348 AGGTTTTTTT TTGAGGATAG TAACACTAAT CTAAATATTC ACAGCTAGAC TACATCCAAA 14468 .......... .......... .......... .......... .......... .......... 348 ATATGTAGTC CCCTTCAAAA GGTATTGCAG TCTAGTAATA TTGCCGTCTA TCACCTATAT 14528 .......... .......... .......... .......... .......... .......... 348 TTCTTACAAA TAATCCAAGA CATCCCAGAT ATCTTGCGCT TGGACTAAAA AGTTCTCTTT 14588 .......... .......... .......... .......... .......... .......... 348 TCACCAAAAA TAAAATAAAG CTAGAGAATT CATCTTGAAG CTCTGAAGTC CATTCTGCTT 14648 .......... .......... .......... .......... .......... .......... 348 GTCTTCAAAG CACCTCTGGT TAGAGTTTTC TCAAAAGGCC TGCATATCCA CTATGGTTCA 14708 .......... .......... .......... .......... .......... .......... 348 GGGCCGATCA TAATCCCTAT GATGTGATAA TTCCGTTGAA TAAGGTGGAA TGTAAGTAAA 14768 .......... .......... .......... .......... .......... .......... 348 AGAAATTCAT TTATAAATAC CAATTAAGTG CCAAACAATG CGTAGATGTC CATGTTACTT 14828 .......... .......... .......... .......... .......... .......... 348 GGAAAAGTTT CCATATGATG CTATATTTCA TGTTCTTTAT TCATTCTTTG TTATTTCGTA 14888 .......... .......... .......... .......... .......... .......... 348 TTAATTATTT ACTTCTTATT ACAGCCTTTT ATATAGTTGA GCTTGTGCTA AGTTGTTTAT 14948 .......... .......... .......... .......... .......... .......... 348 TCTTTTGCAC CATCAGTAAT ATTCTGAATG TTGCATGTGA TGTATCAGGT TGAGGGTAGT 15008 .......... .......... .......... .......... .......... .......... 348 TTTGCTATAA AAATTGATTC CACCTTTATC TTGTCCTAAA TTCTAAGTTG GATTTTCTTT 15068 .......... .......... .......... .......... .......... .......... 348 TCTGATACTC TCACTACAAT CCCTCAGGAA AATCTAGTTA TATTGTAAAA CTGGCATATT 15128 .......... .......... .......... .......... .......... .......... 348 TGCCTTGAGC TGTCATATTC TAACTTGCAG AAAGGAAATA AGACAAATAG CTCATAGTTC 15188 .......... .......... .......... .......... .......... .......... 348 CTTACAAATG CACGCCTTTG GAGCCAGCTG TTATGTTATT CTCTAAGGCA TATCAGCAGT 15248 .......... .......... .......... .......... .......... .......... 348 CAAGATTGAT TCTTAAACTG ATTTTTCAGC TCCATGAATT TGGTCTATTG GTAAGAGCAC 15308 .......... .......... .......... .......... .......... .......... 348 ATCATGTAAT GTTTGAGTTA GAGGCATGTC ACGAGTTTGA ACCCAACCAC TTCAAAAAAC 15368 .......... .......... .......... .......... .......... .......... 348 ATAGTTTTTA AGTATAGAAT GTGAGAGGGG CGACTCCAAT ATCCACCGAG TTTTGGACTG 15428 .......... .......... .......... .......... .......... .......... 348 CGTCGGCTAG CCCTCGGGGA TTTCTGGGTT ATCAATTTTC TTAAAAAAGC TGCTATCTCC 15488 .......... .......... .......... .......... .......... .......... 348 ATACTAATTG CTTATTGAGG GTTATCAATT TTCTTATAAA AGCTGCTATC TCCATACAAA 15548 .......... .......... .......... .......... .......... .......... 348 TTGCTTATTG AGGATGAATT TGAGCAGTTA CTGAAGCAAC TAATTTTGAA TAATTTGTCC 15608 .......... .......... .......... .......... .......... .......... 348 TTCAAAAATA AAACCCACAT ATCAAGAACT AAATGAAAGG TTATTGCTTC AGGGGTGTAG 15668 .......... .......... .......... .......... .......... .......... 348 TTGTTCTTTA ATATCTATAA AAGTATGTGA AAGCAATTTA ACCAAGGATT AGTTTGTTTG 15728 .......... .......... .......... .......... .......... .......... 348 ACTCGCTGAA GCAAAAGAAG GCTACTACTT TGGGGCCAGG GTAGCCATAG ATAGTCTGAC 15788 .......... .......... .......... .......... .......... .......... 348 GTCTTAGAGT ATTGCTGTAA ACAATCAACA TCTTGCAAAA CATGTCATTG TTAATGTGTG 15848 .......... .......... .......... .......... .......... .......... 348 CCCCCCTGTC TCTCATACAC ACAAAAAATT GCCGAAACAG AAAAAAGAAT GGTTGATGAA 15908 .......... .......... .......... .......... .......... .......... 348 CAGTGCTAGA ACCAGCTTTT TTGCAGGGGG AGACTGATTC ACCTTCAAGT GAGCATGTGC 15968 .......... .......... .......... .......... .......... .......... 348 TTGGCGCAAA TGGTGGAAGA AGATGTTATA CATTACTTCA GGGCCATTCA GGGCCTGTTT 16028 .......... .......... .......... .......... .......... .......... 348 ATTCTGCATC ATTCAGTCCG CACGGGGATT TTCTTCTTTC TTCATCATCA GATTCAACTG 16088 .......... .......... .......... .......... .......... .......... 348 GTATGATATC ATATGACTTT GATTGCTATT AGCTCTACAA TAGTTCTTAT TCATATGGAT 16148 .......... .......... .......... .......... .......... .......... 348 TATGATAGTT ACTGAAGTTC TATATGCTTA CTCTATAACC ATGTGACCTT TTTGGCTAAT 16208 .......... .......... .......... .......... .......... .......... 348 TATTTCTATG CAGTTCGCTT ATGGAGCACA AAGTTAAATG CTAATGTTGT TTGCTACAAA 16268 .......... .......... .......... .......... .......... .......... 348 GGCCACAATT ACCCAGTATG GGATGTTCAG GTAGGTTGCT AGTTTGTCAT TTATTTTGTT 16328 .......... .......... .......... .......... .......... .......... 348 TAATGATTCC TTTTTGGATG TAATTGTGGT AATATATTTG CAATCTCTTT AAGTAACTCA 16388 .......... .......... .......... .......... .......... .......... 348 CCTAATTGGT TGTTAAACAG AGAACTGCCC GAGTTAATGC ATTTTTTGCT TTCTCATGGT 16448 .......... .......... .......... .......... .......... .......... 348 AACTGTAGAT AAAAGTTGTC ACAATGGGCA AATATATGTT TGGTTTTCAC TTCACATCTT 16508 .......... .......... .......... .......... .......... .......... 348 GAGTGCAGTT TAGCCCAGCT GGACATTATT TTGCCAGTTC TTCACATGAC CGCACTGCAA 16568 .......... .......... .......... .......... .......... .......... 348 GGATCTGGTC TGTGGACAGG ATACAGCCTC TAAGAATAAT GGCCGGACAC TTGTCAGATG 16628 .......... .......... .......... .......... .......... .......... 348 TAGATGTGAG TATCTAGTTT GTGCTCTATG CCATGGGAAC TATTTATTTG ATCTGATCTA 16688 .......... .......... .......... .......... .......... .......... 348 CGTTGGCATC TTTATCACTC TGTGGCTGTA TAATCAATCT TAGTTACTTG ACCTACTTTT 16748 .......... .......... .......... .......... .......... .......... 348 CATTTTCGTC CTCTATAATC ACTTGGCCTG TTATAAAGTG ACATCTTTTC CCCATGTAAA 16808 .......... .......... .......... .......... .......... .......... 348 AAAAATGAAA TGGCTAAGTT TTCCGAGTGC TCAAATACCC AGACATAGGG GGCCATCTTT 16868 .......... .......... .......... .......... .......... .......... 348 CCATTTTGTG AGGCCCCATA ATGTTGGCCA CCACTGATAC TTTGGCAATT ACAAGAAGTT 16928 .......... .......... .......... .......... .......... .......... 348 AAGTTCATTA AGTATTCTAA TTTTTGAACT TCTTGTGATG TTTTCAGGCG TACACTTAAC 16988 .......... .......... .......... .......... .......... .......... 348 TTTTCGACTA TCAATTTAGT TCTTTTCTTA AACTACTGCT AATACATTTG ATAAGTTCAA 17048 .......... .......... .......... .......... .......... .......... 348 ATGACATCTT AAAGTCCATT CCAGTCAAAT ATCTCATATA AAATGGGACA GATGGAGAGT 17108 .......... .......... .......... .......... .......... .......... 348 ATAATGTTTC TTTTAGCTTT GATTTGGTAT CTTCTCAACA ACAGTCCACA CTTCATTAAC 17168 .......... .......... .......... .......... .......... .......... 348 TTTTACTTTT TAGTGTAACT CTTTCTTTTG CCTTTTTTAT CTTTTCACCA ACAATCCTCC 17228 .......... .......... .......... .......... .......... .......... 348 CAAAATAGTG ATGTTTTTTG AAGGATCCGA TTTGATTGCG GCAATAATTT TGGAGAGACT 17288 .......... .......... .......... .......... .......... .......... 348 GAGCGCATAG GGAAGAGTAA CTTTTTTTAT AACTTGGATT ATTAATCTGG GAAGGCCTTA 17348 .......... .......... .......... .......... .......... .......... 348 CCTAGTTTGT ACCCATGTCC CATTTGTGAC TACTAATTTT GCAAGAAAAG GTTAAGTTCT 17408 .......... .......... .......... .......... .......... .......... 348 ATACATTATA TCAGAGATAC ACAGACAATA GACATTAAAT AAATTACTTA AAACTAATTA 17468 .......... .......... .......... .......... .......... .......... 348 ATGTATTTAA TTAATTCCAA ACAAGTTGTC ATGCTTTACT AAAAAGATTG AAGGTTGAAT 17528 .......... .......... .......... .......... .......... .......... 348 ATTTTATCTG GAGAGATTGG GCACTAATAA AATGCACTTA CCATAACCAT ATCAGGGTAA 17588 .......... .......... .......... .......... .......... .......... 348 TTTTTGATTT GGCATGGAAA TTTTCAGTTA CTTAGATTTC TTGCAATTTC CTTTCTATTG 17648 .......... .......... .......... .......... .......... .......... 348 ACATAAATTT GAGAGGATGT TAAATTCATC ATGTAGTGTG TGCGATGGCA CGCAAATTGC 17708 .......... .......... .......... .......... .......... .......... 348 AATTACATTG CAACCGGATC AAGCGACAAA ACTGTACGCT TGTGGGACGT CCAGAGTGGT 17768 .......... .......... .......... .......... .......... .......... 348 GACTGTGTCA GAATTTTCAT TGGTCATAGG AGTATGATCC TATCATTGGC AATGTCTCCT 17828 .......... .......... .......... .......... .......... .......... 348 GATGGTCGAT ATATGGCATC CGGTGATGAA GATGGAACAG TCATGATGTG GGATCTCTCA 17888 .......... .......... .......... .......... .......... .......... 348 AGTGGACGTT GTATTACTCC TTTGACCGGT CATTCCTCTT GTGTGTGGTC ACTTGCTTTT 17948 .......... .......... .......... .......... .......... .......... 348 AGGTAGGGAT AGAAATGAAC TTAACCTTAA GTTTGTGTAC GCTCAGAGAT GCACTTGAGT 18008 .......... .......... .......... .......... .......... .......... 348 ATGAAGTTCA TTGAATATAG ATTATATTTT TGAAGCTTTT TTGTCTTATT TCAGTGGTGA 18068 | ||| .......... .......... .......... .......... .......... ....TTATGA 354 AGGTTCACTT CTTGCATCGG GCTCTGCGGA TTGCACTGTA AAATTATGGG ATGTAACCAC 18128 | | || || || TGATACAGTT CTC....... .......... .......... .......... .......... 367 AAGCACCAGA GCGCCACTAA AAGAAGAGAA GTAAGTATTA ATGAAGCAGA CATTTACTGT 18188 .......... .......... .......... .......... .......... .......... 367 GGCATTTGTT TTCTCTTAGA TTGCTGCTAA TACCAGCCCT CTCTCTCTCT ATCTATTGAA 18248 .......... .......... .......... .......... .......... .......... 367 CAGCAAATCT GGAGGTAACA ATAGGCTTCG GTTATTGAAG ACCCTACCTA CCAAAGCTAC 18308 .......... .......... .......... .......... .......... .......... 367 ACCAATCTAT GCTTTGCACG TAAGAATTGT TATGCTTGCT TCTTTCTGTG GCTTTATTAT 18368 .......... .......... .......... .......... .......... .......... 367 TGGATCCTCT AAAAGTTGCA TGTTATACTC TGTGAGCAGT TTTCACGAAG AAATCTTTTA 18428 .......... .......... .......... .......... .......... .......... 367 TTTGCTGCTG GAGCTTTCTC GAAAAGTGCA CGAGTCCCTT GCTTTAAAGT CTCTTGACGT 18488 .......... .......... .......... .......... .......... .......... 367 GAGATTACAT CATGGTTCCC TTGCAAATTT TGGTGCAATC ATCAATGGCA AGTTTTACTT 18548 .......... .......... .......... .......... .......... .......... 367 CTCAGACCTC GGTTTTGTTA GAGGAGCAAC TCATGTTGGT GACACGTGCA TCTCACAATA 18608 .......... .......... .......... .......... .......... .......... 367 CAATTTTGCA TCACATGGTG TAATTTGGAA TGTGGAGGTC TTTTATTTTC TATGGTGGAT 18668 .......... .......... .......... .......... .......... .......... 367 GAACGTCGGA TTTGTAAATG CTTATTTAAT GTATGTCCTT AAAATGACGA TGTTCCTGTA 18728 .......... .......... .......... .......... .......... .......... 367 ACCCTGATAC CATTGCTTAT CCCATTGGTG GAATATTGGA AGCATGGGCA GAAAGGTATA 18788 .......... .......... .......... .......... .......... .......... 367 CAATTTAGCA TCTTCTAAAA CTATATTTTG GGAGTAGGAT GTCTCAAGCA TTTGTGGTTT 18848 .......... .......... .......... .......... .......... .......... 367 TGTGTATGTT AACCATGTTT GTTTACAGAC CCTTTCCCTG TTTCTACCTT GTGGATTATG 18908 .......... .......... .......... .......... .......... .......... 367 TATGAATTTT AGCTGAACTA AAAAGTTTGA AATTCGTTTG GATTAGCTTA TTTTAAGTGT 18968 .......... .......... .......... .......... .......... .......... 367 AAGCCAAAAC AGCTTTTAAG CACTGGTCTT CTGGAATGTT TTGGATAACT TGCAAAAGTG 19028 .......... .......... .......... .......... .......... .......... 367 CTTATAAGCA CTTAGGTTTA AACTAAAATG GTAAAAATAA GTCAATCGAA ACAACTCGTT 19088 .......... .......... .......... .......... .......... .......... 367 GCGTCTATTA TAAGAAGCAA CAACAGAGTT TCAGACTTGT GATCTGTTTT TCGTTTAACA 19148 .......... .......... .......... .......... .......... .......... 367 ACAGAATACT TTCTAATTAG GTGAAGGATC AATGGATTTA ATTTGGAAAA TAGTAGTACT 19208 .......... .......... .......... .......... .......... .......... 367 AGTTATAAGC TTTAATTAGG CGGATAAGAA ATACAAATAT ATATACACAT ACAGGTAATC 19268 .......... .......... .......... .......... .......... .......... 367 TTATAGTTGT TTTATTTTAA TCTCACTTTT TAAAATAAAT GAGTGTACCA AGTACTTAAA 19328 .......... .......... .......... .......... .......... .......... 367 ATTGACGTGT GGAGGCCCTA AATTTCATGA CTAAAGAGTG CATCTAAAAT TTGTATCATG 19388 .......... .......... .......... .......... .......... .......... 367 CATTGAGGCC CTCCTTTCCT AGGCCTCATT GCTCCTATTA AAGCATGTTA AAAATCATCT 19448 .......... .......... .......... .......... .......... .......... 367 TTTAATATAC TTCACCTTGT TGAAATCATT ACCTTTTAGT TCTCCAAAAT CTTTATTAAT 19508 .......... .......... .......... .......... .......... .......... 367 TGTCTTCTTA GCTTCCCTCT TTAGATATTT GTATGCGTTC GAATGTCCTA GACCTTTAGG 19568 | | | |||| | || | | || |||| || | .......... .......... ....TTCTAT GTATCCTGTC --AGGCATTA GACC-TTGG. 399 CACACCCAAC ACTTCAATTG CTACTTTTCT AATAGAATTT AATCTGTTCT TATTTACTTG 19628 .......... .......... .......... .......... .......... .......... 399 TCAAATAATA ATTTGAATAG TAAGTTTATC ATTTTATTTA ACAACATACA TACTTTTTAA 19688 .......... .......... .......... .......... .......... .......... 399 GAAAATAATA ATTTGTATAG TAAGTTTATC ATTTTATTTA TATTAAATGA TAGGTTCCAA 19748 .......... .......... .......... .......... .......... .......... 399 ACATATTTAC TTGATTTGTC AAAAATTGCA AAAAAAAAAA AGAAATTGAT ACGCTCATCG 19808 .......... .......... .......... .......... .......... .......... 399 AACAGTTCAA GTAGAAGTGA ATAGGTAAGA AGCAAAAGGC CCCATATCAA TGCATCTCCA 19868 .......... .......... .......... .......... .......... .......... 399 TAGGAGACAA TATGAGCAAA AGACAGACTC CCTAAATCCT GCAGAAAAGA ATTCACTCCC 19928 .......... .......... .......... .......... .......... .......... 399 GGGTGAGTGA AGGGGTATTC AAACAGATCA ATACTCAATC AAACAATGTC CACATAAACG 19988 .......... .......... .......... .......... .......... .......... 399 AGGACAGGTA GATGAGTAGA CTGTAGACTT TCTCTACGTA CCATCAGACA AGTAACGTAT 20048 .......... .......... .......... .......... .......... .......... 399 CAACCTGTAA TCACTTAAGT AGACTGATTC AGAATACCAG CAGCCAAGAG AAGAGATGGT 20108 ||||| || .......... .......... .......... .......... .......... AAGAGGTG.. 407 AATTTATGAT CCAACGCATC CATAAAATAC TCATCAACAG AGTATCTCCT TCCTACGCTA 20168 .......... .......... .......... .......... .......... .......... 407 AGAGGGCTAA AAGTAACAAA AGTGAATACA 20198 ||||| || .......... .......... ..TGAATCCA 415 hqPGS_C06HBa0046G10.1-4+_SGN-U315609+ (10465 10724) ******************************************************************************** EST sequence 9 -strand 1177 n (File: SGN-U335242-) 1 AAATGTCCCC AAGGCAAATA TTTTTTCACA TAAGAATTTC TTGGTGGGAT TTAGGAAAAT 61 CTTTAATTGG GGTAAAGGCC TCTTTGAAAT CCGTGGCCAA ATTTCAGGAC CTCCCTAGAA 121 GTAAATGTCA GAAGAGTAAG GTTATCCCAT CCCGACTTTT TAACCCACTA GCTTAATTTA 181 ATACAGGAAC AAACATCATC ATCCTAAGTT CAGCAGTTAT GTCACCGATT AACTAGACCA 241 TATAACCACC ATTATGTGTT TTCTTTATGG CATTTTGGTA CATGTTCCCT TTGCTAAGCA 301 ACACTGAAGA CGAACTCATT ATCAGGGGGG TTAGAATGGT AGGAATGATA CTGATGTCAG 361 AAATTTATGA ATGTAGCAGT GGCCAATGGA CATTATGCAC AATCCCTTTG ATCAAGAAAC 421 CTAAGTAAAG CCTGCTTCTC AAAGAGAAAG ATATACATAA ATTAAAAGGA AACAGAACTT 481 CAAGATGAAT CTTGTCCAGC CATGATCATG ATAACTGATT ATCTCAGCAC ATGTCTGCAC 541 CAGGATCATT AAGTTACAAC TACTAAGATC AACCTTGCTA GAATTTTTAT CTTACTTCCT 601 GCCCAACTCC CCACTATTCT ATCTCGGAGA AGATCCATTA TTGTACTGGG AATTGGCTGA 661 TGAAATGTTT CTTTTCTCAG ATCAAACATA CCAAATGACA CATGTTTGAG CTTGATGTTT 721 ATAATTAAGA CAAATATATA AAAGATTTCC CCATTGTGAA AGGGAGAACC AGCTCCTCAA 781 CAACTTATGA AACTGCAGAC TACGAGGCAA AACTTAATTT ACAGATTTAT GGTAAGCAAA 841 AACATTACGG ATCTTTGACC TCCATCAGTT GGCTTATAAT TAAATCTGAA TTGCAGATAA 901 GATGACTAAT AATTTTGCAA GGCCAACAGT TACCCTTCAG GGTGGCCCAG TGGTTTGAGC 961 TTGGGACTTC CATGTTGGAG GTCTCAAATT CGAAACCCCT TGCCAGCGAA AGCAAGGGGT 1021 TTGCCTTCTG GGTCGAGCTC GTCGCACCAA GCTTACCTTG TGCAGGTTAC CTCTCCTATG 1081 TGGTTTGCGA GCTATTGCAT AGGAGCGGAA TGCCTCGTGC CGAATTCCTG CAGCCCGGGG 1141 GATCCACTAG TCTAGAGCGG CCGCCCCGGG AGTCAGA Predicted gene structure (within gDNA segment 486 to 11944): Exon 1 1934 1954 ( 21 n); cDNA 785 805 ( 21 n); score: 0.524 Intron 1 1955 3092 (1138 n); Pd: 0.499 (s: 0), Pa: 0.599 (s: 0) Exon 2 3093 3102 ( 10 n); cDNA 806 815 ( 10 n); score: 0.900 Intron 2 3103 4494 (1392 n); Pd: 0.000 (s: 0), Pa: 0.354 (s: 0) Exon 3 4495 4509 ( 15 n); cDNA 816 829 ( 14 n); score: 0.867 Intron 3 4510 4980 ( 471 n); Pd: 0.000 (s: 0), Pa: 0.923 (s: 0) Exon 4 4981 4987 ( 7 n); cDNA 830 836 ( 7 n); score: 0.714 Intron 4 4988 5368 ( 381 n); Pd: 0.803 (s: 0), Pa: 0.000 (s: 0) Exon 5 5369 5373 ( 5 n); cDNA 837 841 ( 5 n); score: 1.000 Intron 5 5374 5462 ( 89 n); Pd: 0.712 (s: 0), Pa: 0.821 (s: 0) Exon 6 5463 5470 ( 8 n); cDNA 842 848 ( 7 n); score: 0.750 Intron 6 5471 5755 ( 285 n); Pd: 0.000 (s: 0), Pa: 0.503 (s: 0) Exon 7 5756 5766 ( 11 n); cDNA 849 860 ( 12 n); score: 0.591 Intron 7 5767 6109 ( 343 n); Pd: 0.000 (s: 0), Pa: 0.170 (s: 0.64) Exon 8 6110 6159 ( 50 n); cDNA 861 905 ( 45 n); score: 0.640 Intron 8 6160 9759 (3600 n); Pd: 0.000 (s: 0.64), Pa: 0.957 (s: 0) Exon 9 9760 9781 ( 22 n); cDNA 906 927 ( 22 n); score: 0.636 Intron 9 9782 10473 ( 692 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.84) Exon 10 10474 10654 ( 181 n); cDNA 928 1108 ( 181 n); score: 0.901 MATCH C06HBa0046G10.1-4+ SGN-U335242- 0.844 330 0.280 C PGS_C06HBa0046G10.1-4+_SGN-U335242- (1934 1954,3093 3102,4495 4509,4981 4987,5369 5373,5463 5470,5756 5766,6110 6159,9760 9781,10474 10654) Alignment (genomic DNA sequence = upper lines): TTGAAAATTT GGAGAGAAGA AGCATGTCGC AGCCGCCGAA AAGATCAAAT TAAATCTATC 1993 || || | | ||| | | TTATGAAACT GCAGACTACG A......... .......... .......... .......... 805 ATGCAGGACA AATCAAAGGT TTATCTCTTT TCTTTTTCCA CCAATCTTTT TCTACGGAAA 2053 .......... .......... .......... .......... .......... .......... 805 TGGTGGTTCT TTGATTGCCG CAAGATTTAC TCCTTTTAAA TACATTCGAT AGTTTTTCTG 2113 .......... .......... .......... .......... .......... .......... 805 CCATTTAAAA TGTAACAATA TATAACATTA TTATCATAGT AATTTTTGTT AATTTGATTA 2173 .......... .......... .......... .......... .......... .......... 805 TTGCTCTTTT TTCTCTCTCT CTAAATGTTT TCTTAGACTA CAAGTATTTG TAATAAATAT 2233 .......... .......... .......... .......... .......... .......... 805 TTATTTTATT ATATTTGATT ATAGTTAAAA TAAAACAGAT AAAAAGATCA AATAAGTAAA 2293 .......... .......... .......... .......... .......... .......... 805 TGATTTATAT ACGACGTGGC GTTGAATGCA AATACAAAAG AAAGAGAATG GAATAATAAT 2353 .......... .......... .......... .......... .......... .......... 805 TGACATTCTT TTTTGGTCAA TAGAATTTAA AAGATTAATC ATTTTTTTTT TTTTGAATGT 2413 .......... .......... .......... .......... .......... .......... 805 GAGGAGTTTC TGATTAGCCA ACAATCCACC CTATAAGCAC AGTTCATGTT ACCATCACTT 2473 .......... .......... .......... .......... .......... .......... 805 GATGAAATTT ACATTTAAGG CTAGGTGACG CCTTCTTATC ACATAAGACT CTGAAAATAA 2533 .......... .......... .......... .......... .......... .......... 805 AACTTCCACT TTCTCAATCT CATATCAATA CGTTGGGTGT TACTTGTCAA TCTTTCCGTT 2593 .......... .......... .......... .......... .......... .......... 805 TTTAGATAAT ACATCCAAAA TACTTGAAAC TATCTCTCTT TTGGATGACT AGTATATCAA 2653 .......... .......... .......... .......... .......... .......... 805 GTCTCACTTC TCCACATCAG CCTCATGCAC CACATTGTTA AATTTGTACT TTGAGTATCC 2713 .......... .......... .......... .......... .......... .......... 805 AATTTTAGTC ATGTCCTCAG CCCGAATCAT TCACTGTAAA GTCTATTTAT AAATCTCTAT 2773 .......... .......... .......... .......... .......... .......... 805 GTGAACGTTA ACTCCGTCGC TAGTCTCACC AATCAAAATT ATATTATCTG CAAATAACAT 2833 .......... .......... .......... .......... .......... .......... 805 ATACTGTGAC ACCCCACCTT AGATCTGCCA TATTAATACA TTTTTTAAAT ATTAATTCTT 2893 .......... .......... .......... .......... .......... .......... 805 AGTAGTATTT CAAATATACA TGATTATATA CTATTGTCTC ACCGGTTCAC ATTAGCATAA 2953 .......... .......... .......... .......... .......... .......... 805 AAAAGTTTGC ATCTTTTGAC TCTAGTTTGT TGTGATAATC TTTGATTTTT GCTTCCGAAG 3013 .......... .......... .......... .......... .......... .......... 805 ATAAATAAAT TTCTCACAAA ATAATATATT ATGTCCTTAA AAAACTTATT CTTCACTAAG 3073 .......... .......... .......... .......... .......... .......... 805 CATATGGGTC CATTTAAAGG GCAAATCTTG TGATTAAGAG AGAAATTGGA GCCTAACCAA 3133 | ||||| ||| .......... .........G GCAAAACTT. .......... .......... .......... 815 AAAAATATAA AACAAAACAC CTTCCATAAA CAAAGTGACG ACGACGTCGT ATTAAGTCCC 3193 .......... .......... .......... .......... .......... .......... 815 TCCAGAAACC CCAAATCAAA ATTCTCGGTC CTATAAACCC CAGGTGTTTT CTTCTTCTTC 3253 .......... .......... .......... .......... .......... .......... 815 TTCCCAATTC TCAAAATCTT ACCATTTCTC GCCATGGATG AAGAAGAGAT TGAGAAAGCA 3313 .......... .......... .......... .......... .......... .......... 815 GTCGTAGCGT ATTTGAAGAA GAAGGGTTTC AAGCAAACGG AGATTGCTTT TCAAGAAGAA 3373 .......... .......... .......... .......... .......... .......... 815 CAGCAAGTGA ATAAAAACAG TTCTTCTTCA ATCCATAATA ACAACAACTC AGCAAATTCT 3433 .......... .......... .......... .......... .......... .......... 815 CAGATTGACC CCGACTTAAC CAAAAAAATC CTTTCTTTCT CTGAGTAAGT TTCTTTTTTC 3493 .......... .......... .......... .......... .......... .......... 815 CACTTAATTT GATGTAAAAA TTACTGTTTG GCTAAGAGGA TTAAGTTCTA AAATCAATTT 3553 .......... .......... .......... .......... .......... .......... 815 ACCTTGAAAG ATAGTTTAAT TTCAATGAAA CACGTTTAAG TAGAGAAGGA TTGAGTACAG 3613 .......... .......... .......... .......... .......... .......... 815 AAGATCTGAA AACTAGTTTA GGGTTGAGAG GTGACTTGGT TGTTGGAAGA AAAGCAGGAG 3673 .......... .......... .......... .......... .......... .......... 815 CAATATAATT GAAGCAGTTT TTCTGCACCC TCCAGTAGCA TTTCTGCAAA TGCCCAAATT 3733 .......... .......... .......... .......... .......... .......... 815 GACCCTGAAC CGTCAGACAA AAATAATCTG TTCTCTGTAG ATAACATAAA TTTAATTACT 3793 .......... .......... .......... .......... .......... .......... 815 GGACCCATTC TAAAGAGGGA GAAATCAGCA CTACTTGGTG AAATAGGTTC TTTTTGAATC 3853 .......... .......... .......... .......... .......... .......... 815 AATTGTCCTC TTCTCCTGTA TTTTAAATGC AGAGTGCTTA GCCATGAGGT TGCGGTTCTA 3913 .......... .......... .......... .......... .......... .......... 815 AATAGCATTG ACAATGCCCA GAACCACTTT TGAGGTACTA GCACACTGTC TAGGAATTGG 3973 .......... .......... .......... .......... .......... .......... 815 AAAGAGAGGA TCAAAGGAAA TTTGGCGGAA GAATATCCCT GTTTGTATCT GGTGGACGTT 4033 .......... .......... .......... .......... .......... .......... 815 ATGAAAAAAA AAGGAATGAG AGATATTATG AAGGGAAGGG TAGCAGCACA CAGAAGATCA 4093 .......... .......... .......... .......... .......... .......... 815 AGATGAGATC TCTTAGTATT ATATTTTTTT GGTGTAAGCA AGATTTAGTG GGGACAATAG 4153 .......... .......... .......... .......... .......... .......... 815 ATAGCTTAGT GGAGATTATA GGCCAACTGT AAATTTTTGA AAGTTTGTTT TTGGATTTTG 4213 .......... .......... .......... .......... .......... .......... 815 AGTATGATGG CATCCCCTGG GGTTTGTAAA TTCCTCCTCA TCAGTCTGAT GAGTTCTTTT 4273 .......... .......... .......... .......... .......... .......... 815 GTGCGGATTT AAGTTACCTA TTTCAAAATA AATAAATAAA TAGAGGGGAT GTAGAGGAGG 4333 .......... .......... .......... .......... .......... .......... 815 ATTTATGAGC TGACCCAAAG TCTCAAACTG TTTAGGATTG AGGCTTCATT AGTTGTTTCA 4393 .......... .......... .......... .......... .......... .......... 815 AGAAGGGAAG CAACAATAAT TGTGTGTTTG GTATGGAGGA AGCTTTGGTG TTATTTTACA 4453 .......... .......... .......... .......... .......... .......... 815 TTCTATTAGT GACATTACAC TTTGGAGCTT CCTACTTTTA GAATATTACA GATATAGATG 4513 ||| ||||| ||| || .......... .......... .......... .......... .AAT-TTACA GATTTA.... 829 GATAGATGTT ATGGCTCCGT TTTCACACCG CCTTACACTA GCTGGAAGTC TTGACAGCTG 4573 .......... .......... .......... .......... .......... .......... 829 TATAACGCAT ACTTTCTGGT TATTTTCTTA GCATGCATCT TTGATATCAT TCTGAATCTA 4633 .......... .......... .......... .......... .......... .......... 829 AATTTTTATG TTTTCAGATT TGAAACCAGT CCCCAACGAT ACCAAGAAGA ATATAGCAAA 4693 .......... .......... .......... .......... .......... .......... 829 CTTCGGTCAT GGGCCTATAG TTCACTGGAT CTGTATAAGG TTGGTCCCCT GACTTGTGCT 4753 .......... .......... .......... .......... .......... .......... 829 AACAGTAACA TGAGAAGTAG TTTATGCAGT ATCATGATGC ATAGCTCCTC ATGACATGTA 4813 .......... .......... .......... .......... .......... .......... 829 ATGCACTAAT AATAGGTCTG CCACCAGTAA CACCATAGGA AATAAACATA AATGGAAAGG 4873 .......... .......... .......... .......... .......... .......... 829 AAAGGCTTTC ATTTTCTCTT TTATTTAGCC CTTTTTAATC CTTAACATAA TGTATTAGTG 4933 .......... .......... .......... .......... .......... .......... 829 ATGTGCACCT TGACCTATTA ATACTTCTGC TGCTGTCTTT CTGGCAGTGA CAAGGTCTTC 4993 || ||| .......... .......... .......... .......... .......TGG TAAG...... 836 AAAATTGAGT TCTCATATTT GTGATTCTCA ACTCTAGTTC ATTGACTTAT GCTATAAATG 5053 .......... .......... .......... .......... .......... .......... 836 TAGCACCAGT GATGGATTTA GTACTGTCTT CTACCATTGC GATCATAATA GCGAGCCAAA 5113 .......... .......... .......... .......... .......... .......... 836 AATAGCTCTT CATAACATAA GCATGACAAG CGTGCCGTCT TCATACAAGT TAGGTTGTGT 5173 .......... .......... .......... .......... .......... .......... 836 GATTATACAA GCCAGATGAA AAAGTGATGA AAATGGTTCC ATATGTTTGG TAGGTTCAAG 5233 .......... .......... .......... .......... .......... .......... 836 TTGGTCCCTT AATACTCTTG AACAATTTTG GTCCTTTAAG TTCACCAAAA GCGAAAACAC 5293 .......... .......... .......... .......... .......... .......... 836 CCTTTGGGGG GGGGGGCAGT GGTTTGGGCT TGGGGCTTCC ATTTTGGAGG TTTCAAGTTC 5353 .......... .......... .......... .......... .......... .......... 836 GAAACCCCTT GCTAGCAAAA GCAAGGGTCC AGTTTAGAAA ATCAAGAGAT AATTTACCTT 5413 ||||| .......... .....CAAAA .......... .......... .......... .......... 841 TTGTGTCCTT TGTTATTAAA TACTATTTAT CATCTAACAC ATTTTCCAGA GCATTAAATT 5473 | ||||| .......... .......... .......... .......... .........A -CATTAC... 848 TAATAAAGTC AAAGGATAAA ATAGTAATGT TACCGCTATT ATTTATTGTT TCTTAAGGGT 5533 .......... .......... .......... .......... .......... .......... 848 GTGCTAAGTC AATAGTAGAC AACTATTGTT GGACCAAGGG AGTAACATCT ATAGTTTCAA 5593 .......... .......... .......... .......... .......... .......... 848 CGTTTGCCAG CTTGCTAATT TTGGTTTATT TTTGGAGGAT GGTGCAGCTT TTGAAGTGCA 5653 .......... .......... .......... .......... .......... .......... 848 ATTTTGCCAT CTTTTAATAT CTATTGTGTG GTATATGGTT CAATTTTTGG TGTTGCAATT 5713 .......... .......... .......... .......... .......... .......... 848 TTCAAGATAG GACAGGACTT TTTGGTGTTT TTGGTTGGAT AGTTAT-TTT GACCATTCCG 5772 || ||| |||| .......... .......... .......... .......... ..GGATCTTT GACC...... 860 ATGAAGTCTA CCCATTCAAG TTCTGTTTAA AAAAAAAAAG GGTCCAACCA CTTGAGTTCT 5832 .......... .......... .......... .......... .......... .......... 860 GTTTCAAAAA AAAAAGTCTT AACCATCCGA GTTTGTTAAA TATTTGTCAG AGACCAAATG 5892 .......... .......... .......... .......... .......... .......... 860 CTCACTTTTG GCAAACTTAG AAAACCCAAA TTGTTGGGGG GTATATTGAA GGACCACCTT 5952 .......... .......... .......... .......... .......... .......... 860 GAACCTATAC TCAAACATAA GGAGCCATTT TTTCTCTCTC TCCAAGTTAG ACACTTCCTT 6012 .......... .......... .......... .......... .......... .......... 860 TTGACTTACT CTTTAATCTT CAAGATTTTG TGGTTTCCTG TAATAGCTGA AGCTACCTTC 6072 .......... .......... .......... .......... .......... .......... 860 CATTTATTTT TGTCCATTTC TGTCTACCTT GTCTCAGTCC ATTCCAGATT GCCTCTCTCT 6132 ||| | | ||| || | || | | .......... .......... .......... .......TCC A-T-CAG-TT GGCT-TATAA 879 TTCTATTGGA ATTGAAGGAT GTGCTGTGTG CATCTGGATT TTCTCCAATT CCAACATAAT 6192 || || || |||| | ||| | || TTAAATCTGA ATTGCA-GAT AAGATGA... .......... .......... .......... 905 CTGATATTGA TTGAAAAGAG GGAAGTTAAG CTAGCTAACG AAGGGGTTGG GATCCGCCTC 6252 .......... .......... .......... .......... .......... .......... 905 GCCCTTAAAG ATCCGCCCCT CGTTTCACTC TGAAAATTTA TTATCAGCTC CTTCTGTTAT 6312 .......... .......... .......... .......... .......... .......... 905 TTAGCCATCT CTCTCCATAA AATTCTTTCA CGTACATGAA AGTTATTTCA TATCCTAGAG 6372 .......... .......... .......... .......... .......... .......... 905 AGTGCGGTTG TATTGTCTCT CTAAAGAATC GTAGGATCCA TTGGAGATAA AATGAAACAA 6432 .......... .......... .......... .......... .......... .......... 905 TTTTAAATGC CGAGTGTTCT GTTTCCTTTT TTTCCTTTGG TCGTTTCTCT TTCTGCAGTG 6492 .......... .......... .......... .......... .......... .......... 905 CTGTTACTGC TTAGAATACC TTTCGGTTCG CAGAAATGAT GTGCAAACTT TGTTGTTTCC 6552 .......... .......... .......... .......... .......... .......... 905 AACAGTTTGG CCATTGTATA TATTGGGGTT GTTAAGTCTT TCTCTTTTAT AGTATGCGTG 6612 .......... .......... .......... .......... .......... .......... 905 ACTCATTTAA AATCATCTTA TATTATGTTG ATTATTGTTA TCCTCTTTTA TTTGTTAGAT 6672 .......... .......... .......... .......... .......... .......... 905 GAGATTATTG TTATTATTGA TTCATCTGAA CATATATATA TTTCAATCTT GCAGCATGAG 6732 .......... .......... .......... .......... .......... .......... 905 TTGCTTCGTG TTTTATATCC TGTATTTATT CATTGTTTCA TGGAACTTGT CGCTAGAGGT 6792 .......... .......... .......... .......... .......... .......... 905 TATATTCAAG AAGGTATACT TTGTCAGTTA TGTTTTGGTT GTATTTTGAT ATTTGTGAGA 6852 .......... .......... .......... .......... .......... .......... 905 GAATTTTTAA CACAATTCTT TTATTTCCAG CACGAGCCTT TTTCAATAGT TACCGTGAAG 6912 .......... .......... .......... .......... .......... .......... 905 ACCATGAGAT GACGCATCTG CGTGATCTTC AGAAGTTAGA AGGCGTCCTC TCACCTTCCC 6972 .......... .......... .......... .......... .......... .......... 905 ATCTAGAGGT ACATCAATAT CCTAGCAACT GTGTGGATGA CCTTTTCCAT GCTTAAGTGT 7032 .......... .......... .......... .......... .......... .......... 905 GTCATAGATC ACTAAACTTA TTCCGAAATG CAGGAAATGG AATTTGCTCA TTCTATACGG 7092 .......... .......... .......... .......... .......... .......... 905 GTGAGCAAAG TGAACATTAA GATGTGTCAG GTATTCTCTT GATCCTTTTG CTTCCTCTGG 7152 .......... .......... .......... .......... .......... .......... 905 TTGAATTTTT CTGCTACTAT AGTGCACACT AATGTCTCAA CTGTGAAAGC CAAGTGTGTC 7212 .......... .......... .......... .......... .......... .......... 905 GGGGTTTGTT AGCAATTGGT GACAAATGCA TATCGAGTTA GTAGTTACAA AGGAGGAAAA 7272 .......... .......... .......... .......... .......... .......... 905 GAAACTAATG TGATATTTCA CTTTAGAGTG CATTATCTTT CATTTCCTTC TCTTGACCAC 7332 .......... .......... .......... .......... .......... .......... 905 TTATTTTGCT GTGGAACTTC AACTTTTTGA CAAAAAATCC ACCTCTTTCC AAATCTTTTC 7392 .......... .......... .......... .......... .......... .......... 905 TTTTGAAGCT GAACTTCTAT TAGTTATGTT GATGAAATAG CAAACACTGG TTCATTTTGT 7452 .......... .......... .......... .......... .......... .......... 905 AGGTTTGTTG GAATTAACTA CAACATTTAG TCTATTGTTC TCATGCCATG GATCTTATCA 7512 .......... .......... .......... .......... .......... .......... 905 CCATGTATAT TAAAGGAACA ATCATTTGTC TAATGGTTTT TCTAGTTTGG TGGATTTACG 7572 .......... .......... .......... .......... .......... .......... 905 TGCAGTTTGA TTACTGTTTT TTGGTCAATA TACATGTCTG GCACCATTTG ATTACTTTTT 7632 .......... .......... .......... .......... .......... .......... 905 ACCACGCATA CCTTTAGACT TAACTGGATT AGCCTTTTGA TTTGCTTATT TTACTCTGAA 7692 .......... .......... .......... .......... .......... .......... 905 ACAGTACTCC TATGACCTTC TGTTGCAATA CTTGCACAAG ACAGAATCTA TTACAATGCT 7752 .......... .......... .......... .......... .......... .......... 905 TGGGATCATC AATGAGCGCA TTAATTTTCA AGGTGCACTT CCCATTTTCG CAGTTGCTTT 7812 .......... .......... .......... .......... .......... .......... 905 CAACCTTTCA ATTTGCAACT ATGTTAAATT GACCATTTTA ATTTAGCGTA ATCTTTTTTG 7872 .......... .......... .......... .......... .......... .......... 905 ATTAAGTAAA GTATTTCATT AAGAAAACAA GGCCGAGATG ACTGTAAACA AGAGATATAC 7932 .......... .......... .......... .......... .......... .......... 905 CCTAAAAGAA GAAACCTACA AAAATATGGT TCACTCTAAA ATACACCCAA TCCTCTATAC 7992 .......... .......... .......... .......... .......... .......... 905 TAATAGGAAC GACATGGTGC ACCAAAAGAA AATAGGGAGT GGAGACTGCT ACTTAGTTGA 8052 .......... .......... .......... .......... .......... .......... 905 GCAAGGCTCA TCTCCATTCC TTCAAAAGCC CCCATATTTC TCTCTCCAAA TGACCCACGT 8112 .......... .......... .......... .......... .......... .......... 905 TAAAGCAAGA GAAGTAACAT TCCAAGCCTT TTGCCTTCTT CTCCTGGCAC CAGTTGTCGA 8172 .......... .......... .......... .......... .......... .......... 905 ACTAAACATC AACTCTTTCA CGGATCTTGG CATCAGCCCT GAAATGCCGA ACCATCTAAA 8232 .......... .......... .......... .......... .......... .......... 905 GATACCCTAC CATAACCTCA TTGCTAGATT GCAATGTAGC ATAATATGAT CCACGATCTC 8292 .......... .......... .......... .......... .......... .......... 905 ACCTGCCTCC TTACTAAGGA AACACCAACT AATACAGACA ACTTTCCATT TCCTAACATT 8352 .......... .......... .......... .......... .......... .......... 905 CTCCGCCGTC AAAATCACCC CTCTATAAAC TAACCAAGTG AAGAAGCACC CCTTCCTTGG 8412 .......... .......... .......... .......... .......... .......... 905 AATCCTAGGA ATATCGTAAA TATTTATTCC ACCATGAAGT GTTTAGGAAG AAGCAGTTAC 8472 .......... .......... .......... .......... .......... .......... 905 ATCTTTCCAT TTATATTGGT ATGATAGTGA AACCATATGA GAAGGAAGAA GAGAAATGTC 8532 .......... .......... .......... .......... .......... .......... 905 TTTTCCTTGA CCATTGTCCT TTAGAACAAA TGCTCATCAT TACATCCACT GAATAAAGAC 8592 .......... .......... .......... .......... .......... .......... 905 GGGGAAAGGA AAAGCGTTCC AATTTAAATT CAACTTCTTT CTGTCAGATC ATTGTTTATT 8652 .......... .......... .......... .......... .......... .......... 905 TTGTCCCTCC ATGATCACTT AACCATCTCA ATCCTCTGGA ACCAAATTAC ATGACTAGAG 8712 .......... .......... .......... .......... .......... .......... 905 GGGAACTGTC ATGTTTATTA TAAATAGTGG TGAATTTTAC CATAATTACT TCCTTTATAT 8772 .......... .......... .......... .......... .......... .......... 905 TGCTTGGTTC TTCCATAGGT GTGCTCTCTA GCTTTTGTTT CTTGGTTCAA GGCTTGTTAC 8832 .......... .......... .......... .......... .......... .......... 905 TAACTCGAAC AAACTCCAAT ACATTTTCCT TGGTAGCTAA AATTTATCAA GTTACAGGGA 8892 .......... .......... .......... .......... .......... .......... 905 GAAAAAGAAA TGAGAAAAGA AGTCTTTGAT AAGATATTGC AGAGGTGGCT GTTTTTGTTG 8952 .......... .......... .......... .......... .......... .......... 905 CTTAATTGTC ATGTTATCGT GGGAGAACAT GGTCACATAG GAGGTGTAAC AAGTGGTGGT 9012 .......... .......... .......... .......... .......... .......... 905 TTAACTAGCT ATAGTGACTA TGTGCCTTCA CTGCTGCCTC TATTGGGTTC TGACCAAGGG 9072 .......... .......... .......... .......... .......... .......... 905 AGGTTGCTAA AATTAAGGTC AAAGATTTAT TGGAATGAAG AACAGTAATA AGAGTGAGTT 9132 .......... .......... .......... .......... .......... .......... 905 ATAGATGCAG AGGGTATTCC AGATCTATTT ATAGGCCTTG AATTCTTTTC CTCTTTATCT 9192 .......... .......... .......... .......... .......... .......... 905 CTTTCATTCG GATTCCACTT TTGCTTGTGC CAAGAAATGC CAAAGTCACT AGATGCACAT 9252 .......... .......... .......... .......... .......... .......... 905 GATTTACTCA ATTAAGTTCA TGGTATGTTT GGTGCAAGGC CGAAGACATG TTCTTCCCAG 9312 .......... .......... .......... .......... .......... .......... 905 GTAGTCTGGC AATGTTCTAG CAAAAAATTG TCCTAAATGC AACCCTATGA ATAGTTTAGT 9372 .......... .......... .......... .......... .......... .......... 905 GGCCCATGAT CCCCCTGTGC CTTGCCTATT ACTCATTATA TAATCATATG GTATAATTTT 9432 .......... .......... .......... .......... .......... .......... 905 AGAGCTATGT ATTTATTAAA TTTAAGTACA ACATGAAGCT AATTTGTATC AAATGACAGT 9492 .......... .......... .......... .......... .......... .......... 905 TTCTCCTGGA CAGCCTGGCT CTATATCTGG TGATACGGAA GTTGTAACTC TTGTTGCAAG 9552 .......... .......... .......... .......... .......... .......... 905 TGGCCATGAT GCTAGTCTCA TAAATCAGAA AGAAGTTCTT TGGGGGGTAA GCAAACAGTC 9612 .......... .......... .......... .......... .......... .......... 905 AATACCAATA ATTTAATCTT TATGTTTTTG GATTGGATTG TGTAGTAAAT ATCAGCTTTT 9672 .......... .......... .......... .......... .......... .......... 905 GACCACTTTA CCTGTCAATT TCTTGAGCTA TTTGATGAAT ATTCTTGTTT GTTGGTTAAC 9732 .......... .......... .......... .......... .......... .......... 905 TGACCATGAA ACAATTAAAT TGGCCAGCTG GAAGTCTTCC CATGCCAACG TATGGAAGAA 9792 || | | || | | |||||| .......... .......... .......CTA ATAATTTTGC AAGGCCAAC. .......... 927 TGGATACCCC CCCCCCCCCC CCAAAAAAAA AAACAAGAAA CAATATAACC AATTCCTTTA 9852 .......... .......... .......... .......... .......... .......... 927 ACAGAACGTA GTGCAGTGCA TTGAGTTCTT GAGAGGTAGG GTAATTAGTG GGAAAATAAC 9912 .......... .......... .......... .......... .......... .......... 927 AATTCTTTGG ATTGCATTAC CTTTGAAGTA TGTGTTTCAG AGTATTGAGG ATAAAATCAC 9972 .......... .......... .......... .......... .......... .......... 927 ATTATGATCT AAAATTGTTC TATCAAGATC GGTTTTAGGA AAAAGAAAAG GTGGCCCTAT 10032 .......... .......... .......... .......... .......... .......... 927 ACAACATTAC CAGTTCCCAA AAAAGAAGAA GGGAAAAGGG CCCTGCAGTT CATCAAAGTA 10092 .......... .......... .......... .......... .......... .......... 927 ATTGGAGACC ATCTGGGTTG GGTCTGGGAC TAGTTCACCA CTATAAAACA TTTCTCTTAT 10152 .......... .......... .......... .......... .......... .......... 927 TCTATGTTTT ATAGCTATGG CTTATGGGTA TGGCAAAGCG GTCAATAAAG TGGGTAAACT 10212 .......... .......... .......... .......... .......... .......... 927 TATGGGAGAT CAGGGTTCAA GTTCCTGTAG AAACAAAGGC GCTAGGTGAT TTTTTCTCGT 10272 .......... .......... .......... .......... .......... .......... 927 CTACCTAAGC TTTGGTGGGC AGATACTGTG TATATACTGG TGGAAGGTAG TAGATACAGA 10332 .......... .......... .......... .......... .......... .......... 927 TTCATGCAAG TTTACTGAAC AACCCATATT AAATTGGAAA AAAAAATAAA ACGAAGAGAA 10392 .......... .......... .......... .......... .......... .......... 927 TGTGGAGCTG CAAGTTATAG ACAAGTGATA AGCTTACTCC TTCGTGTATA AACTAATATT 10452 .......... .......... .......... .......... .......... .......... 927 ATCTAAGGAG AGTTTATCAC TATCAATCCT TTGGGGTGGC CCAGTGGTTT GAGTTTGTGA 10512 | | ||| | ||||||| |||||||||| ||| ||| || .......... .......... .AGTTACCCT TCAGGGTGGC CCAGTGGTTT GAGCTTGGGA 966 CTTCCATGTT GGAGGTCTCA AGTTCGAAAC CCCTTGCCAG CGAAAGCAAG GAGTTTGCCT 10572 |||||||||| |||||||||| | |||||||| |||||||||| |||||||||| | |||||||| CTTCCATGTT GGAGGTCTCA AATTCGAAAC CCCTTGCCAG CGAAAGCAAG GGGTTTGCCT 1026 TCTGGGTCGA GCTCGTCGCA CCAGGTTTGT CTAGTGCGTG TTACCTCTCA TATGTGGTTT 10632 |||||||||| |||||||||| ||| | || || |||| | ||||||||| |||||||||| TCTGGGTCGA GCTCGTCGCA CCAAGCTTAC CTTGTGCAGG TTACCTCTCC TATGTGGTTT 1086 GCGAGCTATT GCATAGGAGC GG 10654 |||||||||| |||||||||| || GCGAGCTATT GCATAGGAGC GG 1108 hqPGS_C06HBa0046G10.1-4+_SGN-U335242- (10474 10654) ******************************************************************************** EST sequence 7 +strand 905 n (File: SGN-U342289+) 1 CTCTTTTGCT GGAGCTCCAC CGCTGTGGCG GCCGCTCTAG AACTAGTGGA TCCCCCGGGC 61 TGCAGGAATT CGGCACGAGG GGAAGTTATG TTTTCTTTTT TATTTAATTA ATATAGGGTG 121 AAAATCATTT TATCTCTTCT ACATGACTGA GTCTTTCAAT GCTTTTGTGG TAAAAGCTAG 181 AGAGAAATTG TTCTAAATTA TTGGAGTAGA TTAGAAGAAA AACTACGAGC AGATTTTAAC 241 AGAGGTATGA AATAGCTTCT GGTTTGCACA CTCTGAATCC ACCAAAAGTA AGACAAAGAG 301 TTACTCAAAA TCAGGGGGAG GGAATCCTTC GGGGTGGCCC AGTGGTTTGA GCTTGAAACT 361 TCCATGTTGG AGGTCTCAAG TTCGAAAACC CCTGTCAGCA AAAGCAAGGG GTTCTGGGTC 421 GAGCTCGTTG GACCATGCTT GCCTTGTGTG GGTTACCTCG CCTATGTGGT TTGTGAGCTA 481 TTGCATAGGA GCGGGGTTTT ACCCTGTGCA CAAACTCATA TTAGAGAGGA TCCTACCAAA 541 TTTGTTCATC CTCTACTCAA TGAAGACTGC TATGTGAAGA CTTATTCTAG AAAGATCAAT 601 CCAATACTGG AAGAGAGCAA TGGCCAGTTG TAGATCACAC NTGTTGTGCA CCCTAATAAG 661 GAAATGGAGG AGAGGTCGAA AACCAATTAC ATGGAGAAGA GAATTAGATG AACAACCAGC 721 CAAAAAGAGA GCAATTCATT GCACTTGCAA AATATGCCAT CAAATTGGGC ATTAGTAGTG 781 GGGAAGAAAA CATCAAGTAA AAACGCACTT CTGCTCATTN GCACGTTGCA TACCTTGATC 841 CACTGCTGTA TGGNNTAATG TTTGCTGGCT GCAGTTTGAG CAGCAAACAG TTTTCTTTGA 901 ATCCC Predicted gene structure (within gDNA segment 6585 to 17531): Exon 1 10477 10670 ( 194 n); cDNA 323 509 ( 187 n); score: 0.866 Intron 1 10671 11372 ( 702 n); Pd: 0.000 (s: 0.94), Pa: 0.000 (s: 0) Exon 2 11373 11398 ( 26 n); cDNA 510 535 ( 26 n); score: 0.692 Intron 2 11399 11492 ( 94 n); Pd: 0.000 (s: 0), Pa: 0.497 (s: 0) Exon 3 11493 11506 ( 14 n); cDNA 536 548 ( 13 n); score: 0.643 Intron 3 11507 12203 ( 697 n); Pd: 0.000 (s: 0), Pa: 0.977 (s: 0) Exon 4 12204 12208 ( 5 n); cDNA 549 553 ( 5 n); score: 0.800 Intron 4 12209 13569 (1361 n); Pd: 0.000 (s: 0), Pa: 0.113 (s: 0.58) Exon 5 13570 13611 ( 42 n); cDNA 554 595 ( 42 n); score: 0.583 Intron 5 13612 13938 ( 327 n); Pd: 0.900 (s: 0.58), Pa: 0.000 (s: 0) Exon 6 13939 13954 ( 16 n); cDNA 596 611 ( 16 n); score: 0.812 Intron 6 13955 14996 (1042 n); Pd: 0.111 (s: 0), Pa: 0.976 (s: 0) Exon 7 14997 15003 ( 7 n); cDNA 612 618 ( 7 n); score: 0.429 Intron 7 15004 16616 (1613 n); Pd: 0.165 (s: 0), Pa: 0.000 (s: 0) Exon 8 16617 16633 ( 17 n); cDNA 619 635 ( 17 n); score: 0.765 MATCH C06HBa0046G10.1-4+ SGN-U342289+ 0.866 321 0.355 C PGS_C06HBa0046G10.1-4+_SGN-U342289+ (10477 10670,11373 11398,11493 11506,12204 12208,13570 13611,13939 13954,14997 15003,16617 16633) Alignment (genomic DNA sequence = upper lines): AATCCTTTGG GGTGGCCCAG TGGTTTGAGT TTGTGACTTC CATGTTGGAG GTCTCAAGTT 10536 ||||||| || |||||||||| ||||||||| ||| ||||| |||||||||| |||||||||| AATCCTTCGG GGTGGCCCAG TGGTTTGAGC TTGAAACTTC CATGTTGGAG GTCTCAAGTT 382 CGAAACCCCT TGCCAGCGAA AGCAAGGAGT TTGCCTTCTG GGTCGAGCTC GTCGCACCAG 10596 ||||| ||| || |||| || ||||||| | | ||||| |||||||||| || | |||| CGAAAACCCC TGTCAGCAAA AGCAAGG-G- --G--TTCTG GGTCGAGCTC GTTGGACCAT 436 GTTTGTCTAG TGCGTGTTAC CTCTCATATG TGGTTTGCGA GCTATTGCAT AGGAGCGGGG 10656 | ||| || | || | ||||| ||| | |||| ||||||| || |||||||||| |||||||||| GCTTGCCTTG TGTGGGTTAC CTCGCCTATG TGGTTTGTGA GCTATTGCAT AGGAGCGGGG 496 TTTTTACCCT GTGCGCACCC AAAGGGTAGC GGCTGTGGGT TTCCCTTGTC ATAAAAAAAG 10716 ||||||||| |||| -TTTTACCCT GTGC...... .......... .......... .......... .......... 509 AAGAAGAAGT ATATCACTAT CAACTAGTTT TAGCCATTCT AGGTTCCATG TTTTGTAAGG 10776 .......... .......... .......... .......... .......... .......... 509 ATTGCTTGGG TTATGCTCTT GATCACACTT CCTCAATGTG GGTGGAATAC ATGTTGGATT 10836 .......... .......... .......... .......... .......... .......... 509 TGATTAAAAT AAGATGGGTA ATTAAATGGG TGCAAACCTA GGAGACAAGT CAAAAATACT 10896 .......... .......... .......... .......... .......... .......... 509 AGGTGATTTC TTCTCATCTG CCCAAGCTTG GTAGTTGATT TATCCTGTAA CTGTGTTGGT 10956 .......... .......... .......... .......... .......... .......... 509 GGGAGAAAGC AAGTACCTAA CGGAATACTC AAGGTGCACA CAAGTTGTCA TAAAACACCA 11016 .......... .......... .......... .......... .......... .......... 509 CCATTTTCAA GTTAAAAAAA ATGTATTATT TGACTTTCAT ATGGCGAATG AAGAGGTCAG 11076 .......... .......... .......... .......... .......... .......... 509 AGAGACTAGA GTCAAAAGAT AAAGAATGTC GTGATGGAGT TGTCCTTTCT TTCGCCTTAA 11136 .......... .......... .......... .......... .......... .......... 509 TCTTCATCCT CTTTCTTTTC TTGTAACTGA GGGTGAGGTG ATGCATGGGT TTTCGAAAAT 11196 .......... .......... .......... .......... .......... .......... 509 TCTTTCGTTC ATTATTTCAT CTTCACTTTA GGGAGTGGGC TGAATATAAA ATGGGCTGAA 11256 .......... .......... .......... .......... .......... .......... 509 TATATAATAC TACAAAAATA TTGTATTAGG CCTGATGAAA TATAGTGGTA ATATAACTTA 11316 .......... .......... .......... .......... .......... .......... 509 CCTTTCGCGG TGGAACAGGC CAATCTTACA TTCCATGTGT GTGTGTATTG GAGCGGACCA 11376 || | .......... .......... .......... .......... .......... ......ACAA 513 ATCCATATTA CAAAGCATAT TAATGAATAA AAAACTGAGG TGAAATGATT ATTTCCATTT 11436 | ||||||| | || || || ACTCATATTA GAGAGGATCC TA........ .......... .......... .......... 535 TTATTTAGAA TCCCCTTAGC TGTGTTTGAT ATTCTATTTG TACCCACATA TCCTAGACAG 11496 || .......... .......... .......... .......... .......... ......CCA- 538 AATTTAATGA GTCTGAGTGT CTGACACTTC CGACACGGAT CATACCCCCC GATTTTAGAA 11556 ||||| | | AATTTGTTCA .......... .......... .......... .......... .......... 548 GAGTCTGTGT AATGTAGATC TTCCGTGTTT TAAAATTTAT CCCCAGGAGA TGTGTTAATA 11616 .......... .......... .......... .......... .......... .......... 548 ATTTATTTTG CAGATGCTTG AAGATTCTTT AGAAGAACGG TTAGAAAAGA CTGGAGGTTC 11676 .......... .......... .......... .......... .......... .......... 548 TGTTCCAGAT TCGGAAAAGT TTGATGGAGA TCCGAAGGAA GGAGAAGTGG AAGAAAACAA 11736 .......... .......... .......... .......... .......... .......... 548 GGTATTGAAT TTCTATCAGT TCATTTCCCA CTTGATCATA TTCATAAATA TTTCGCACTT 11796 .......... .......... .......... .......... .......... .......... 548 AATTATCTCA TCTTTCCTTA GTGGTGTAAA TTTTTTTTGG TGGACATCCT TCCACATTTA 11856 .......... .......... .......... .......... .......... .......... 548 CTTTTGTCGA AAAAGTGACA TCCTTCCACA TTTATTGTTT TTATTTTGCC CTTTTTTCAG 11916 .......... .......... .......... .......... .......... .......... 548 AAGAAGTCAA TTGAAGGTGG TAAACATGGT GCACCTCTTA AAAAACTAAA GAAGGACAAA 11976 .......... .......... .......... .......... .......... .......... 548 GTTGGGATTG CAACAGGGAA ATCTTCTCGT ACAGAGAGCA GCACAGTGAC AACTGCACCA 12036 .......... .......... .......... .......... .......... .......... 548 CGTGTCAAAC CGGAACTTGC TTTACCTGCT ATGTACTCCT CAAACCTATT ATCTTACTTA 12096 .......... .......... .......... .......... .......... .......... 548 CCAAAAGAAA AAGAGAGGGC CCTATTGTGT TTTTCTCTCC CACGACATCA TCCCTGTACT 12156 .......... .......... .......... .......... .......... .......... 548 TGGAAAAGTC ATTCTTGTTG GATGTCATAA TTTTATTTGA AATACAGTCA TCATGATCCA 12216 || || .......... .......... .......... .......... .......TCC TC........ 553 TTAGAAAACA TCAAGTGAAA CGGCTATACA AAGAAGTTGC ATAAAAAAGG AAAATTATGA 12276 .......... .......... .......... .......... .......... .......... 553 AGGATGAGGA AAATATGATT GAGCTCAATC CTTTCTGTGG TGTCATACTC ATAGTACTCC 12336 .......... .......... .......... .......... .......... .......... 553 CTCCATTTCA ATTTATTTGA CCTTTTTTCC TCTCTAGTCC ATTGAAAAAA GAATGACCCT 12396 .......... .......... .......... .......... .......... .......... 553 TTCCTTTTTA TAGCAACTTC TAAATTTTAC TTCCCAAGTT GTATGTTTAA GACTACAAGA 12456 .......... .......... .......... .......... .......... .......... 553 ATAAAGGGCA TTTCGGTACA TTTGACAGAT CTTTGATTTT AAACCACAAG ATTTAAAGAT 12516 .......... .......... .......... .......... .......... .......... 553 CTTTATTTTA TTAAACTCTG TGCCAAGTCA AAACAAGAAT TTGAAATGGA GGGAGTGTAT 12576 .......... .......... .......... .......... .......... .......... 553 TTTTTTAGAT AATTAAATAT CTTTAATAAA GTCATACTCG GTATATCTTC TTACATTCAT 12636 .......... .......... .......... .......... .......... .......... 553 CCATATATTG CATTATGTTT CTTATCTCTC TGTGTGTGTG GGGGGGGGGG GGTTGGATCT 12696 .......... .......... .......... .......... .......... .......... 553 TGGATCATCT TAACTGAAAG AAAATTTGTC ACAGACCTGT AGAGGTAGAA CTTTCTATTC 12756 .......... .......... .......... .......... .......... .......... 553 TGGAAGACTT GAGGAACCGC GTACAGTTGA GTAATGCATC ATTGCCCTCT GTTAGCTTCT 12816 .......... .......... .......... .......... .......... .......... 553 ATACATTTGT TAATACACAC AATGGGTAAG TTTTCATGAT CTTGAATCTT TTAAGTGTGG 12876 .......... .......... .......... .......... .......... .......... 553 AATTCGTATT CAGGAACATA TCCTAATCTC AGTGAGTTAA TCTGTAAATG TCTGTAGACT 12936 .......... .......... .......... .......... .......... .......... 553 AAACTGTGCA TCAATATCAC ATGATGGATC ACTAGTGGCT GGTGGATTCT CAGATTCATC 12996 .......... .......... .......... .......... .......... .......... 553 TGTGAAGGTG CTTGTAGCTT CTGAATGACG TTGAAATTAT GTTGTCACAA ATTACAGTAT 13056 .......... .......... .......... .......... .......... .......... 553 CTGTTGATCC TTGATCATCT TCTTATCTTT TTTTTGGAAC TGGTAACTTT GATCATCTTC 13116 .......... .......... .......... .......... .......... .......... 553 TAATCTAAGT CCCCCATTTT ACAGGTCTGG GACATGGCAA AGCTTGGGGA ACAAACTGGT 13176 .......... .......... .......... .......... .......... .......... 553 CCATGTAAGT CCAATATGAT GGTCCTCAGC TCCTTTTCAA TGTATTGTTA TTTCATGTTT 13236 .......... .......... .......... .......... .......... .......... 553 CAAGATGTTT TAGTGAATAG AGGTTGAAAA GGTCCCTTTT AATACTACTC CTAGTCACAG 13296 .......... .......... .......... .......... .......... .......... 553 TATATCTCGC CAGGACAGCA AGAAAGATTT ATTCTTTGCT GCTTTAATTT ATTTGATAAG 13356 .......... .......... .......... .......... .......... .......... 553 TAGATAAATT TTATTTCACT AAGAAACTGC ACTAGGGTTG TGAAGTTTGT TACATCAGAA 13416 .......... .......... .......... .......... .......... .......... 553 ATTTGCTTAG CAGAAACATG ATTAGTTATG AAGGTTTCTC GACTGAACAT ATAAATGCAG 13476 .......... .......... .......... .......... .......... .......... 553 CTTTACATTT CTGATGGAAG TATTTCTTGA ACTCCTTGCA TTTTTCAATT AGGTAAATAA 13536 .......... .......... .......... .......... .......... .......... 553 TTTTAATCGA AAAGTCTCCT GTATACAATG CAGTACACAA AAAATAACTA TATCAGAATA 13596 ||| ||| || | ||| ||| | .......... .......... .......... ...TACTCAA TGAAGACTGC TATGTGAAGA 580 -TGATTCTAA CAAACAATAT CCTATTGTTT TTTTTTTGGA GAAAGTATCA GAATATGATT 13655 | ||||| | ||| | CTTATTCT-A GAAAGA.... .......... .......... .......... .......... 595 CTAACAAACA ATATCCTACT GTTTTTTGTT TTTTTTGAGA AAGTAACATT TGTATTAAAG 13715 .......... .......... .......... .......... .......... .......... 595 AAACTTGGTA AAAAGGTTGT GCTGGTAACC ATGTGCAGCT TCCAAAAGTA TTGGGAATCC 13775 .......... .......... .......... .......... .......... .......... 595 TTTTACTTCT CACTAGGGAT CTATCATGTC ATATTGGATT CTACATCATT TACATAATCT 13835 .......... .......... .......... .......... .......... .......... 595 CTTTGCACCA AAAACATAAA CAACACAAAA CAATTCATCT CTATCATTTG AATGAGGCTA 13895 .......... .......... .......... .......... .......... .......... 595 TTGCTGCCTT CAAAACATCT AGGGTTCCTT TCCTTCAAAG CTGTCAACCA AATGCTGGAG 13955 |||| | ||| ||||| .......... .......... .......... .......... ...TCAATCC AATACTGGA. 611 TGAGATCTCC CTGATTGTGC CAACATCTCA GTAAATCAGC TGTAGTTCTT GGCACTGTCC 14015 .......... .......... .......... .......... .......... .......... 611 ATCCGAGTCC AACTATGCTT GGGAAGAGTT GCTACAATTG AGCAGTTACA CCAAGATGTA 14075 .......... .......... .......... .......... .......... .......... 611 AGAACAGGTG TCTGTTAGAC TCTTTAAGTC TGCACAGTAT TACTAACATC TGGTGCTCAA 14135 .......... .......... .......... .......... .......... .......... 611 CTGGAATCCT CTCTTCTTTA AATTTATCGA GTTAGACTGG CCTATAAGAA CTTCACTAAT 14195 .......... .......... .......... .......... .......... .......... 611 GCACCAAAAA GAATCAAGGG ATTGAAAAGC TATTCCTTGA GTCTACATAC TCGTTTTCTA 14255 .......... .......... .......... .......... .......... .......... 611 TCTCTTAAAA AGTCTTGAAC CACTCCTATA ATGTTGAAGT GATCAATAAT TGAGAATTTT 14315 .......... .......... .......... .......... .......... .......... 611 GTCACATGTC TTGTTATGAC GCTCATCATG TATGCTAGTG GTTTAGATAC TCCTAAGGAA 14375 .......... .......... .......... .......... .......... .......... 611 AAGGCAAACA TTTTGAATCC AAATGTTAAC ATGAGGTTTT TTTTTGAGGA TAGTAACACT 14435 .......... .......... .......... .......... .......... .......... 611 AATCTAAATA TTCACAGCTA GACTACATCC AAAATATGTA GTCCCCTTCA AAAGGTATTG 14495 .......... .......... .......... .......... .......... .......... 611 CAGTCTAGTA ATATTGCCGT CTATCACCTA TATTTCTTAC AAATAATCCA AGACATCCCA 14555 .......... .......... .......... .......... .......... .......... 611 GATATCTTGC GCTTGGACTA AAAAGTTCTC TTTTCACCAA AAATAAAATA AAGCTAGAGA 14615 .......... .......... .......... .......... .......... .......... 611 ATTCATCTTG AAGCTCTGAA GTCCATTCTG CTTGTCTTCA AAGCACCTCT GGTTAGAGTT 14675 .......... .......... .......... .......... .......... .......... 611 TTCTCAAAAG GCCTGCATAT CCACTATGGT TCAGGGCCGA TCATAATCCC TATGATGTGA 14735 .......... .......... .......... .......... .......... .......... 611 TAATTCCGTT GAATAAGGTG GAATGTAAGT AAAAGAAATT CATTTATAAA TACCAATTAA 14795 .......... .......... .......... .......... .......... .......... 611 GTGCCAAACA ATGCGTAGAT GTCCATGTTA CTTGGAAAAG TTTCCATATG ATGCTATATT 14855 .......... .......... .......... .......... .......... .......... 611 TCATGTTCTT TATTCATTCT TTGTTATTTC GTATTAATTA TTTACTTCTT ATTACAGCCT 14915 .......... .......... .......... .......... .......... .......... 611 TTTATATAGT TGAGCTTGTG CTAAGTTGTT TATTCTTTTG CACCATCAGT AATATTCTGA 14975 .......... .......... .......... .......... .......... .......... 611 ATGTTGCATG TGATGTATCA GGTTGAGGGT AGTTTTGCTA TAAAAATTGA TTCCACCTTT 15035 ||| .......... .......... .AGAGAGC.. .......... .......... .......... 618 ATCTTGTCCT AAATTCTAAG TTGGATTTTC TTTTCTGATA CTCTCACTAC AATCCCTCAG 15095 .......... .......... .......... .......... .......... .......... 618 GAAAATCTAG TTATATTGTA AAACTGGCAT ATTTGCCTTG AGCTGTCATA TTCTAACTTG 15155 .......... .......... .......... .......... .......... .......... 618 CAGAAAGGAA ATAAGACAAA TAGCTCATAG TTCCTTACAA ATGCACGCCT TTGGAGCCAG 15215 .......... .......... .......... .......... .......... .......... 618 CTGTTATGTT ATTCTCTAAG GCATATCAGC AGTCAAGATT GATTCTTAAA CTGATTTTTC 15275 .......... .......... .......... .......... .......... .......... 618 AGCTCCATGA ATTTGGTCTA TTGGTAAGAG CACATCATGT AATGTTTGAG TTAGAGGCAT 15335 .......... .......... .......... .......... .......... .......... 618 GTCACGAGTT TGAACCCAAC CACTTCAAAA AACATAGTTT TTAAGTATAG AATGTGAGAG 15395 .......... .......... .......... .......... .......... .......... 618 GGGCGACTCC AATATCCACC GAGTTTTGGA CTGCGTCGGC TAGCCCTCGG GGATTTCTGG 15455 .......... .......... .......... .......... .......... .......... 618 GTTATCAATT TTCTTAAAAA AGCTGCTATC TCCATACTAA TTGCTTATTG AGGGTTATCA 15515 .......... .......... .......... .......... .......... .......... 618 ATTTTCTTAT AAAAGCTGCT ATCTCCATAC AAATTGCTTA TTGAGGATGA ATTTGAGCAG 15575 .......... .......... .......... .......... .......... .......... 618 TTACTGAAGC AACTAATTTT GAATAATTTG TCCTTCAAAA ATAAAACCCA CATATCAAGA 15635 .......... .......... .......... .......... .......... .......... 618 ACTAAATGAA AGGTTATTGC TTCAGGGGTG TAGTTGTTCT TTAATATCTA TAAAAGTATG 15695 .......... .......... .......... .......... .......... .......... 618 TGAAAGCAAT TTAACCAAGG ATTAGTTTGT TTGACTCGCT GAAGCAAAAG AAGGCTACTA 15755 .......... .......... .......... .......... .......... .......... 618 CTTTGGGGCC AGGGTAGCCA TAGATAGTCT GACGTCTTAG AGTATTGCTG TAAACAATCA 15815 .......... .......... .......... .......... .......... .......... 618 ACATCTTGCA AAACATGTCA TTGTTAATGT GTGCCCCCCT GTCTCTCATA CACACAAAAA 15875 .......... .......... .......... .......... .......... .......... 618 ATTGCCGAAA CAGAAAAAAG AATGGTTGAT GAACAGTGCT AGAACCAGCT TTTTTGCAGG 15935 .......... .......... .......... .......... .......... .......... 618 GGGAGACTGA TTCACCTTCA AGTGAGCATG TGCTTGGCGC AAATGGTGGA AGAAGATGTT 15995 .......... .......... .......... .......... .......... .......... 618 ATACATTACT TCAGGGCCAT TCAGGGCCTG TTTATTCTGC ATCATTCAGT CCGCACGGGG 16055 .......... .......... .......... .......... .......... .......... 618 ATTTTCTTCT TTCTTCATCA TCAGATTCAA CTGGTATGAT ATCATATGAC TTTGATTGCT 16115 .......... .......... .......... .......... .......... .......... 618 ATTAGCTCTA CAATAGTTCT TATTCATATG GATTATGATA GTTACTGAAG TTCTATATGC 16175 .......... .......... .......... .......... .......... .......... 618 TTACTCTATA ACCATGTGAC CTTTTTGGCT AATTATTTCT ATGCAGTTCG CTTATGGAGC 16235 .......... .......... .......... .......... .......... .......... 618 ACAAAGTTAA ATGCTAATGT TGTTTGCTAC AAAGGCCACA ATTACCCAGT ATGGGATGTT 16295 .......... .......... .......... .......... .......... .......... 618 CAGGTAGGTT GCTAGTTTGT CATTTATTTT GTTTAATGAT TCCTTTTTGG ATGTAATTGT 16355 .......... .......... .......... .......... .......... .......... 618 GGTAATATAT TTGCAATCTC TTTAAGTAAC TCACCTAATT GGTTGTTAAA CAGAGAACTG 16415 .......... .......... .......... .......... .......... .......... 618 CCCGAGTTAA TGCATTTTTT GCTTTCTCAT GGTAACTGTA GATAAAAGTT GTCACAATGG 16475 .......... .......... .......... .......... .......... .......... 618 GCAAATATAT GTTTGGTTTT CACTTCACAT CTTGAGTGCA GTTTAGCCCA GCTGGACATT 16535 .......... .......... .......... .......... .......... .......... 618 ATTTTGCCAG TTCTTCACAT GACCGCACTG CAAGGATCTG GTCTGTGGAC AGGATACAGC 16595 .......... .......... .......... .......... .......... .......... 618 CTCTAAGAAT AATGGCCGGA CACTTGTCAG ATGTAGAT 16633 | | | ||| ||||||| .......... .......... .AATGGCCAG TTGTAGAT 635 hqPGS_C06HBa0046G10.1-4+_SGN-U342289+ (10477 10670) ******************************************************************************** EST sequence 2 +strand 1331 n (File: SGN-U324885+) 1 GCAAACACTG ATATTTACAT GTTTGGGAAG CTCCACGGAG GACTTTAAGT GTTAGCTTAT 61 TGAAAAGAAA AATTAAGAAA CAAAAGAAAA AGAAAATACC TCGAATGTGA AATTTGGAGT 121 AACTTTTGTA TCGTAGAAGC TATTTTTTTA AGAAAGAGTA TACTGTTTAG TACATGATGT 181 GGTGTTGGAA TAATTCAAGT GCACTTGAAT TGAGTTGGGC AAAAGCTAGA GTTGTGTCCT 241 TTAGGGTGGC CCAGTGGTTT GGGTATGGGA CTTCCATGTT GGAGGTTTCA AGTTTGAAAC 301 CCCTTGCCAG CGAAAGCAAG GGGTTTGCCT TCTGGGTCGA GCTCATCGCA TCAGGCTTGC 361 CTAGTGTGGG GTACCTCTCT TGTGTTGTTT GCGAGCAATT GCATAGGAGC GGGGTTTTTT 421 TCTGTGTGCA CCCAAAGGGT AGCAGCTGCT GGTTTCCCTT GTCATTAAAA GAAAAAAGAG 481 CTACCAGAGC TGTAACGGTC TTTTTAAGAT GAGAAATCAA TAATAATCCT TGTAAAAAGT 541 TTTCAGCAAA TATTGGACTT ATTAACTGAA TTGTTTTCTT TAAGTGCTTA CTGAAGCTCT 601 AGGACAATAT CATTAATTTC AGGTCAATGC TGCTGGGGAT CTCTGTGCTA TTTGCCAGGA 661 GAAAATGCAT ACACCAATCT TACTACGTTG TAAACATATA TTCTGTGAAG ACTGTGTGTC 721 TGAATGGTTC GAGAGGGAAA GGACGTGCCC TCTGTGCAGG TCTTTAGTAA AACCTGCCGA 781 TCTAAAATCA TTTGGTGACG GTTCAACTAG TCTCTTTTTC CAGTTATTCT GAAGAAATAA 841 TTGTCGATGA GAGCGAGTCT CTTCAAAAGC TGCCAACTTC ACTAAAAGCA GCTATAGCTG 901 AACCCCCCCC ATCCATGGAA AGAAAGCCTA TTGACACACT TATTTCAGAA TCCTGATCTG 961 TTTGCTCCTG AAAGTTGTCT AATTGGCTCA ACGCAGGCCA TTGTTTATAC ACAGTTCCAC 1021 ACATGGAGCA GGCTATTGTT CATACGTTTG CTCGGAGAAA ATGTTTGTAT CAGTCTATTA 1081 ATCCACAGAA TTGTCAAGTG TACAATGTAT GAAAATAGTG TTGTAGTCAG ATATATATAT 1141 ATCTTTTTAT CCCCATGGCC AGTTAGGTTT CATCCCCTAA ACAAACCTAT ACAGAAAAAT 1201 GCTTATTTGT GCCTATATGT AAAAACAAGC TGGCATCTTT TGGAAAAAAG CATAGTCTTG 1261 GTTGGCTCGA AGATTTTTGG GACCATCATT TAAGTCATAT CCGCAGTGCA TAAAAAAAAA 1321 AAAAAAAAAA A Predicted gene structure (within gDNA segment 7456 to 20176): Exon 1 10479 10724 ( 246 n); cDNA 237 480 ( 244 n); score: 0.878 Intron 1 10725 10891 ( 167 n); Pd: 0.762 (s: 0.84), Pa: 0.000 (s: 0) Exon 2 10892 10898 ( 7 n); cDNA 481 487 ( 7 n); score: 0.714 Intron 2 10899 11629 ( 731 n); Pd: 0.966 (s: 0), Pa: 0.997 (s: 0) Exon 3 11630 11653 ( 24 n); cDNA 488 510 ( 23 n); score: 0.625 Intron 3 11654 11916 ( 263 n); Pd: 0.000 (s: 0), Pa: 0.912 (s: 0) Exon 4 11917 11928 ( 12 n); cDNA 511 522 ( 12 n); score: 0.750 Intron 4 11929 12142 ( 214 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0) Exon 5 12143 12151 ( 9 n); cDNA 523 531 ( 9 n); score: 0.778 Intron 5 12152 13528 (1377 n); Pd: 0.446 (s: 0), Pa: 0.955 (s: 0) Exon 6 13529 13563 ( 35 n); cDNA 532 565 ( 34 n); score: 0.629 Intron 6 13564 15215 (1652 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0) Exon 7 15216 15235 ( 20 n); cDNA 566 584 ( 19 n); score: 0.750 Intron 7 15236 16153 ( 918 n); Pd: 0.953 (s: 0), Pa: 0.000 (s: 0) Exon 8 16154 16169 ( 16 n); cDNA 585 600 ( 16 n); score: 0.812 PPA cDNA 1310 1331 MATCH C06HBa0046G10.1-4+ SGN-U324885+ 0.878 369 0.277 C PGS_C06HBa0046G10.1-4+_SGN-U324885+ (10479 10724,10892 10898,11630 11653,11917 11928,12143 12151,13529 13563,15216 15235,16154 16169) Alignment (genomic DNA sequence = upper lines): TCCTTTGGGG TGGCCCAGTG GTTTGAGTTT GTGACTTCCA TGTTGGAGGT CTCAAGTTCG 10538 |||||| ||| |||||||||| ||||| || | | |||||||| |||||||||| ||||||| | TCCTTTAGGG TGGCCCAGTG GTTTGGGTAT GGGACTTCCA TGTTGGAGGT TTCAAGTTTG 296 AAACCCCTTG CCAGCGAAAG CAAGGAGTTT GCCTTCTGGG TCGAGCTCGT CGCACCAGGT 10598 |||||||||| |||||||||| ||||| |||| |||||||||| |||||||| | |||| |||| AAACCCCTTG CCAGCGAAAG CAAGGGGTTT GCCTTCTGGG TCGAGCTCAT CGCATCAGGC 356 TTGTCTAGTG CGTGTTACCT CTCATATGTG GTTTGCGAGC TATTGCATAG GAGCGGGGTT 10658 ||| |||||| | | ||||| ||| | ||| |||||||||| ||||||||| |||||||||| TTGCCTAGTG TGGGGTACCT CTCTTGTGTT GTTTGCGAGC AATTGCATAG GAGCGGGGTT 416 TTTACCCTGT GCGCACCCAA AGGGTAGCGG CTGTGGGTTT CCCTTGTCAT AAAAAAAGAA 10718 ||| |||| | |||||||| |||||||| | ||| ||||| |||||||||| |||| | || TTT-TTCTGT GTGCACCCAA AGGGTAGCAG CTGCTGGTTT CCCTTGTCAT TAAAAGA-AA 474 GAAGAAGTAT ATCACTATCA ACTAGTTTTA GCCATTCTAG GTTCCATGTT TTGTAAGGAT 10778 |||| AAAGAG.... .......... .......... .......... .......... .......... 480 TGCTTGGGTT ATGCTCTTGA TCACACTTCC TCAATGTGGG TGGAATACAT GTTGGATTTG 10838 .......... .......... .......... .......... .......... .......... 480 ATTAAAATAA GATGGGTAAT TAAATGGGTG CAAACCTAGG AGACAAGTCA AAAATACTAG 10898 ||| || .......... .......... .......... .......... .......... ...CTACCAG 487 GTGATTTCTT CTCATCTGCC CAAGCTTGGT AGTTGATTTA TCCTGTAACT GTGTTGGTGG 10958 .......... .......... .......... .......... .......... .......... 487 GAGAAAGCAA GTACCTAACG GAATACTCAA GGTGCACACA AGTTGTCATA AAACACCACC 11018 .......... .......... .......... .......... .......... .......... 487 ATTTTCAAGT TAAAAAAAAT GTATTATTTG ACTTTCATAT GGCGAATGAA GAGGTCAGAG 11078 .......... .......... .......... .......... .......... .......... 487 AGACTAGAGT CAAAAGATAA AGAATGTCGT GATGGAGTTG TCCTTTCTTT CGCCTTAATC 11138 .......... .......... .......... .......... .......... .......... 487 TTCATCCTCT TTCTTTTCTT GTAACTGAGG GTGAGGTGAT GCATGGGTTT TCGAAAATTC 11198 .......... .......... .......... .......... .......... .......... 487 TTTCGTTCAT TATTTCATCT TCACTTTAGG GAGTGGGCTG AATATAAAAT GGGCTGAATA 11258 .......... .......... .......... .......... .......... .......... 487 TATAATACTA CAAAAATATT GTATTAGGCC TGATGAAATA TAGTGGTAAT ATAACTTACC 11318 .......... .......... .......... .......... .......... .......... 487 TTTCGCGGTG GAACAGGCCA ATCTTACATT CCATGTGTGT GTGTATTGGA GCGGACCAAT 11378 .......... .......... .......... .......... .......... .......... 487 CCATATTACA AAGCATATTA ATGAATAAAA AACTGAGGTG AAATGATTAT TTCCATTTTT 11438 .......... .......... .......... .......... .......... .......... 487 ATTTAGAATC CCCTTAGCTG TGTTTGATAT TCTATTTGTA CCCACATATC CTAGACAGAA 11498 .......... .......... .......... .......... .......... .......... 487 TTTAATGAGT CTGAGTGTCT GACACTTCCG ACACGGATCA TACCCCCCGA TTTTAGAAGA 11558 .......... .......... .......... .......... .......... .......... 487 GTCTGTGTAA TGTAGATCTT CCGTGTTTTA AAATTTATCC CCAGGAGATG TGTTAATAAT 11618 .......... .......... .......... .......... .......... .......... 487 TTATTTTGCA GATGCTTGAA GATTCTTTAG AAGAACGGTT AGAAAAGACT GGAGGTTCTG 11678 | ||| || ||||| |||| .......... .A-GCTGTAA CGGTCTTTTT AAGAT..... .......... .......... 510 TTCCAGATTC GGAAAAGTTT GATGGAGATC CGAAGGAAGG AGAAGTGGAA GAAAACAAGG 11738 .......... .......... .......... .......... .......... .......... 510 TATTGAATTT CTATCAGTTC ATTTCCCACT TGATCATATT CATAAATATT TCGCACTTAA 11798 .......... .......... .......... .......... .......... .......... 510 TTATCTCATC TTTCCTTAGT GGTGTAAATT TTTTTTGGTG GACATCCTTC CACATTTACT 11858 .......... .......... .......... .......... .......... .......... 510 TTTGTCGAAA AAGTGACATC CTTCCACATT TATTGTTTTT ATTTTGCCCT TTTTTCAGAA 11918 | .......... .......... .......... .......... .......... ........GA 512 GAAGTCAATT GAAGGTGGTA AACATGGTGC ACCTCTTAAA AAACTAAAGA AGGACAAAGT 11978 ||| ||||| GAAATCAATA .......... .......... .......... .......... .......... 522 TGGGATTGCA ACAGGGAAAT CTTCTCGTAC AGAGAGCAGC ACAGTGACAA CTGCACCACG 12038 .......... .......... .......... .......... .......... .......... 522 TGTCAAACCG GAACTTGCTT TACCTGCTAT GTACTCCTCA AACCTATTAT CTTACTTACC 12098 .......... .......... .......... .......... .......... .......... 522 AAAAGAAAAA GAGAGGGCCC TATTGTGTTT TTCTCTCCCA CGACATCATC CCTGTACTTG 12158 || ||| | | .......... .......... .......... .......... ....ATAATC CTT....... 531 GAAAAGTCAT TCTTGTTGGA TGTCATAATT TTATTTGAAA TACAGTCATC ATGATCCATT 12218 .......... .......... .......... .......... .......... .......... 531 AGAAAACATC AAGTGAAACG GCTATACAAA GAAGTTGCAT AAAAAAGGAA AATTATGAAG 12278 .......... .......... .......... .......... .......... .......... 531 GATGAGGAAA ATATGATTGA GCTCAATCCT TTCTGTGGTG TCATACTCAT AGTACTCCCT 12338 .......... .......... .......... .......... .......... .......... 531 CCATTTCAAT TTATTTGACC TTTTTTCCTC TCTAGTCCAT TGAAAAAAGA ATGACCCTTT 12398 .......... .......... .......... .......... .......... .......... 531 CCTTTTTATA GCAACTTCTA AATTTTACTT CCCAAGTTGT ATGTTTAAGA CTACAAGAAT 12458 .......... .......... .......... .......... .......... .......... 531 AAAGGGCATT TCGGTACATT TGACAGATCT TTGATTTTAA ACCACAAGAT TTAAAGATCT 12518 .......... .......... .......... .......... .......... .......... 531 TTATTTTATT AAACTCTGTG CCAAGTCAAA ACAAGAATTT GAAATGGAGG GAGTGTATTT 12578 .......... .......... .......... .......... .......... .......... 531 TTTTAGATAA TTAAATATCT TTAATAAAGT CATACTCGGT ATATCTTCTT ACATTCATCC 12638 .......... .......... .......... .......... .......... .......... 531 ATATATTGCA TTATGTTTCT TATCTCTCTG TGTGTGTGGG GGGGGGGGGG TTGGATCTTG 12698 .......... .......... .......... .......... .......... .......... 531 GATCATCTTA ACTGAAAGAA AATTTGTCAC AGACCTGTAG AGGTAGAACT TTCTATTCTG 12758 .......... .......... .......... .......... .......... .......... 531 GAAGACTTGA GGAACCGCGT ACAGTTGAGT AATGCATCAT TGCCCTCTGT TAGCTTCTAT 12818 .......... .......... .......... .......... .......... .......... 531 ACATTTGTTA ATACACACAA TGGGTAAGTT TTCATGATCT TGAATCTTTT AAGTGTGGAA 12878 .......... .......... .......... .......... .......... .......... 531 TTCGTATTCA GGAACATATC CTAATCTCAG TGAGTTAATC TGTAAATGTC TGTAGACTAA 12938 .......... .......... .......... .......... .......... .......... 531 ACTGTGCATC AATATCACAT GATGGATCAC TAGTGGCTGG TGGATTCTCA GATTCATCTG 12998 .......... .......... .......... .......... .......... .......... 531 TGAAGGTGCT TGTAGCTTCT GAATGACGTT GAAATTATGT TGTCACAAAT TACAGTATCT 13058 .......... .......... .......... .......... .......... .......... 531 GTTGATCCTT GATCATCTTC TTATCTTTTT TTTGGAACTG GTAACTTTGA TCATCTTCTA 13118 .......... .......... .......... .......... .......... .......... 531 ATCTAAGTCC CCCATTTTAC AGGTCTGGGA CATGGCAAAG CTTGGGGAAC AAACTGGTCC 13178 .......... .......... .......... .......... .......... .......... 531 ATGTAAGTCC AATATGATGG TCCTCAGCTC CTTTTCAATG TATTGTTATT TCATGTTTCA 13238 .......... .......... .......... .......... .......... .......... 531 AGATGTTTTA GTGAATAGAG GTTGAAAAGG TCCCTTTTAA TACTACTCCT AGTCACAGTA 13298 .......... .......... .......... .......... .......... .......... 531 TATCTCGCCA GGACAGCAAG AAAGATTTAT TCTTTGCTGC TTTAATTTAT TTGATAAGTA 13358 .......... .......... .......... .......... .......... .......... 531 GATAAATTTT ATTTCACTAA GAAACTGCAC TAGGGTTGTG AAGTTTGTTA CATCAGAAAT 13418 .......... .......... .......... .......... .......... .......... 531 TTGCTTAGCA GAAACATGAT TAGTTATGAA GGTTTCTCGA CTGAACATAT AAATGCAGCT 13478 .......... .......... .......... .......... .......... .......... 531 TTACATTTCT GATGGAAGTA TTTCTTGAAC TCCTTGCATT TTTCAATTAG GTAAATAATT 13538 ||||| | || .......... .......... .......... .......... .......... GTAAAAAGTT 541 TTAATCGAAA AGTCTCCTGT ATACAATGCA GTACACAAAA AATAACTATA TCAGAATATG 13598 || | | || | | || | || | TTCAGCAAAT ATTGGACT-T ATTAA..... .......... .......... .......... 565 ATTCTAACAA ACAATATCCT ATTGTTTTTT TTTTGGAGAA AGTATCAGAA TATGATTCTA 13658 .......... .......... .......... .......... .......... .......... 565 ACAAACAATA TCCTACTGTT TTTTGTTTTT TTTGAGAAAG TAACATTTGT ATTAAAGAAA 13718 .......... .......... .......... .......... .......... .......... 565 CTTGGTAAAA AGGTTGTGCT GGTAACCATG TGCAGCTTCC AAAAGTATTG GGAATCCTTT 13778 .......... .......... .......... .......... .......... .......... 565 TACTTCTCAC TAGGGATCTA TCATGTCATA TTGGATTCTA CATCATTTAC ATAATCTCTT 13838 .......... .......... .......... .......... .......... .......... 565 TGCACCAAAA ACATAAACAA CACAAAACAA TTCATCTCTA TCATTTGAAT GAGGCTATTG 13898 .......... .......... .......... .......... .......... .......... 565 CTGCCTTCAA AACATCTAGG GTTCCTTTCC TTCAAAGCTG TCAACCAAAT GCTGGAGTGA 13958 .......... .......... .......... .......... .......... .......... 565 GATCTCCCTG ATTGTGCCAA CATCTCAGTA AATCAGCTGT AGTTCTTGGC ACTGTCCATC 14018 .......... .......... .......... .......... .......... .......... 565 CGAGTCCAAC TATGCTTGGG AAGAGTTGCT ACAATTGAGC AGTTACACCA AGATGTAAGA 14078 .......... .......... .......... .......... .......... .......... 565 ACAGGTGTCT GTTAGACTCT TTAAGTCTGC ACAGTATTAC TAACATCTGG TGCTCAACTG 14138 .......... .......... .......... .......... .......... .......... 565 GAATCCTCTC TTCTTTAAAT TTATCGAGTT AGACTGGCCT ATAAGAACTT CACTAATGCA 14198 .......... .......... .......... .......... .......... .......... 565 CCAAAAAGAA TCAAGGGATT GAAAAGCTAT TCCTTGAGTC TACATACTCG TTTTCTATCT 14258 .......... .......... .......... .......... .......... .......... 565 CTTAAAAAGT CTTGAACCAC TCCTATAATG TTGAAGTGAT CAATAATTGA GAATTTTGTC 14318 .......... .......... .......... .......... .......... .......... 565 ACATGTCTTG TTATGACGCT CATCATGTAT GCTAGTGGTT TAGATACTCC TAAGGAAAAG 14378 .......... .......... .......... .......... .......... .......... 565 GCAAACATTT TGAATCCAAA TGTTAACATG AGGTTTTTTT TTGAGGATAG TAACACTAAT 14438 .......... .......... .......... .......... .......... .......... 565 CTAAATATTC ACAGCTAGAC TACATCCAAA ATATGTAGTC CCCTTCAAAA GGTATTGCAG 14498 .......... .......... .......... .......... .......... .......... 565 TCTAGTAATA TTGCCGTCTA TCACCTATAT TTCTTACAAA TAATCCAAGA CATCCCAGAT 14558 .......... .......... .......... .......... .......... .......... 565 ATCTTGCGCT TGGACTAAAA AGTTCTCTTT TCACCAAAAA TAAAATAAAG CTAGAGAATT 14618 .......... .......... .......... .......... .......... .......... 565 CATCTTGAAG CTCTGAAGTC CATTCTGCTT GTCTTCAAAG CACCTCTGGT TAGAGTTTTC 14678 .......... .......... .......... .......... .......... .......... 565 TCAAAAGGCC TGCATATCCA CTATGGTTCA GGGCCGATCA TAATCCCTAT GATGTGATAA 14738 .......... .......... .......... .......... .......... .......... 565 TTCCGTTGAA TAAGGTGGAA TGTAAGTAAA AGAAATTCAT TTATAAATAC CAATTAAGTG 14798 .......... .......... .......... .......... .......... .......... 565 CCAAACAATG CGTAGATGTC CATGTTACTT GGAAAAGTTT CCATATGATG CTATATTTCA 14858 .......... .......... .......... .......... .......... .......... 565 TGTTCTTTAT TCATTCTTTG TTATTTCGTA TTAATTATTT ACTTCTTATT ACAGCCTTTT 14918 .......... .......... .......... .......... .......... .......... 565 ATATAGTTGA GCTTGTGCTA AGTTGTTTAT TCTTTTGCAC CATCAGTAAT ATTCTGAATG 14978 .......... .......... .......... .......... .......... .......... 565 TTGCATGTGA TGTATCAGGT TGAGGGTAGT TTTGCTATAA AAATTGATTC CACCTTTATC 15038 .......... .......... .......... .......... .......... .......... 565 TTGTCCTAAA TTCTAAGTTG GATTTTCTTT TCTGATACTC TCACTACAAT CCCTCAGGAA 15098 .......... .......... .......... .......... .......... .......... 565 AATCTAGTTA TATTGTAAAA CTGGCATATT TGCCTTGAGC TGTCATATTC TAACTTGCAG 15158 .......... .......... .......... .......... .......... .......... 565 AAAGGAAATA AGACAAATAG CTCATAGTTC CTTACAAATG CACGCCTTTG GAGCCAGCTG 15218 ||| .......... .......... .......... .......... .......... .......CTG 568 TTATGTTATT CTCTAAGGCA TATCAGCAGT CAAGATTGAT TCTTAAACTG ATTTTTCAGC 15278 |||| || || |||| AATTGTT-TT CTTTAAG... .......... .......... .......... .......... 584 TCCATGAATT TGGTCTATTG GTAAGAGCAC ATCATGTAAT GTTTGAGTTA GAGGCATGTC 15338 .......... .......... .......... .......... .......... .......... 584 ACGAGTTTGA ACCCAACCAC TTCAAAAAAC ATAGTTTTTA AGTATAGAAT GTGAGAGGGG 15398 .......... .......... .......... .......... .......... .......... 584 CGACTCCAAT ATCCACCGAG TTTTGGACTG CGTCGGCTAG CCCTCGGGGA TTTCTGGGTT 15458 .......... .......... .......... .......... .......... .......... 584 ATCAATTTTC TTAAAAAAGC TGCTATCTCC ATACTAATTG CTTATTGAGG GTTATCAATT 15518 .......... .......... .......... .......... .......... .......... 584 TTCTTATAAA AGCTGCTATC TCCATACAAA TTGCTTATTG AGGATGAATT TGAGCAGTTA 15578 .......... .......... .......... .......... .......... .......... 584 CTGAAGCAAC TAATTTTGAA TAATTTGTCC TTCAAAAATA AAACCCACAT ATCAAGAACT 15638 .......... .......... .......... .......... .......... .......... 584 AAATGAAAGG TTATTGCTTC AGGGGTGTAG TTGTTCTTTA ATATCTATAA AAGTATGTGA 15698 .......... .......... .......... .......... .......... .......... 584 AAGCAATTTA ACCAAGGATT AGTTTGTTTG ACTCGCTGAA GCAAAAGAAG GCTACTACTT 15758 .......... .......... .......... .......... .......... .......... 584 TGGGGCCAGG GTAGCCATAG ATAGTCTGAC GTCTTAGAGT ATTGCTGTAA ACAATCAACA 15818 .......... .......... .......... .......... .......... .......... 584 TCTTGCAAAA CATGTCATTG TTAATGTGTG CCCCCCTGTC TCTCATACAC ACAAAAAATT 15878 .......... .......... .......... .......... .......... .......... 584 GCCGAAACAG AAAAAAGAAT GGTTGATGAA CAGTGCTAGA ACCAGCTTTT TTGCAGGGGG 15938 .......... .......... .......... .......... .......... .......... 584 AGACTGATTC ACCTTCAAGT GAGCATGTGC TTGGCGCAAA TGGTGGAAGA AGATGTTATA 15998 .......... .......... .......... .......... .......... .......... 584 CATTACTTCA GGGCCATTCA GGGCCTGTTT ATTCTGCATC ATTCAGTCCG CACGGGGATT 16058 .......... .......... .......... .......... .......... .......... 584 TTCTTCTTTC TTCATCATCA GATTCAACTG GTATGATATC ATATGACTTT GATTGCTATT 16118 .......... .......... .......... .......... .......... .......... 584 AGCTCTACAA TAGTTCTTAT TCATATGGAT TATGATAGTT ACTGAAGTTC T 16169 | || ||||||| || | .......... .......... .......... .....TGCTT ACTGAAGCTC T 600 hqPGS_C06HBa0046G10.1-4+_SGN-U324885+ (10479 10724) ******************************************************************************** EST sequence 10 -strand 720 n (File: SGN-U315611-) 1 TTTTTTTTTT TTTATTCAAA GGAGATATTA TATTCCCTTC TCTTTTTTCT TTTGATATAC 61 TGAGGAACTT AAAGAGAAAA TCCAGGCATT TTGTATGCAC AATTTGACTA CTACAATTAC 121 GACGATTTAC CCTCATTCTT ATACAAGGAT TGTCGATGCT CTACGAGTTA TATATATACA 181 AGCTCCTATC AACCCCTTTT GTTATCTACG AGTTATATAT ATACACGGAG ATAACAAAAG 241 GGGTTGATAG GAGCTTGTAT AATCTTTAAG AAAGCAAAAA AGAAGCAGGA AATCCAAGAT 301 TTCTTACAGA GGTCGCAAGA GAGGGTAATC CTCAAGAAGT TGTCGTTCTG ATAATGTGTC 361 GTTTTCGTTC TGTGGAGTCC ATAAAATCTC GACTGCCAGT GTTCTACTGG AAGGAATAGA 421 CGCAATCTTT TGCAATGCTT CTTTCAAGTC TCCACTTCCG TTAATAGTAG GCAATTTATA 481 AGCACCTTCA GCAGCAACCA AGATTGTAAC CCTTCGAGGT GGTCCAGTGT GGTTTGAGCT 541 AGGGACTTCC ATGTTGGAGG TCTCAAGTTC GAAACCCCTT GCCAGCGAAA GCAAGGAGTT 601 TGCCTTCTGG ATCGAGCTCG TGCCTGGTGC GGGTTACCTC TCCTATGTGG TTTACGAGCT 661 ATTGCATAGG GGCGGGTTTT ACCCTGTACG CACCCAAAAG GGTAGCGGCT GCGGGTTTCC Predicted gene structure (within gDNA segment 4471 to 12277): Exon 1 5228 5244 ( 17 n); cDNA 513 529 ( 17 n); score: 0.706 Intron 1 5245 10496 (5252 n); Pd: 0.000 (s: 0), Pa: 0.478 (s: 0.94) Exon 2 10497 10700 ( 204 n); cDNA 530 720 ( 191 n); score: 0.870 PPA cDNA 16 1 MATCH C06HBa0046G10.1-4+ SGN-U315611- 0.870 221 0.307 C PGS_C06HBa0046G10.1-4+_SGN-U315611- (5228 5244,10497 10700) Alignment (genomic DNA sequence = upper lines): TTCAAGTTGG TCCCTTAATA CTCTTGAACA ATTTTGGTCC TTTAAGTTCA CCAAAAGCGA 5287 ||| || ||| ||| | TTCGAGGTGG TCCAGTG... .......... .......... .......... .......... 529 AAACACCCTT TGGGGGGGGG GGCAGTGGTT TGGGCTTGGG GCTTCCATTT TGGAGGTTTC 5347 .......... .......... .......... .......... .......... .......... 529 AAGTTCGAAA CCCCTTGCTA GCAAAAGCAA GGGTCCAGTT TAGAAAATCA AGAGATAATT 5407 .......... .......... .......... .......... .......... .......... 529 TACCTTTTGT GTCCTTTGTT ATTAAATACT ATTTATCATC TAACACATTT TCCAGAGCAT 5467 .......... .......... .......... .......... .......... .......... 529 TAAATTTAAT AAAGTCAAAG GATAAAATAG TAATGTTACC GCTATTATTT ATTGTTTCTT 5527 .......... .......... .......... .......... .......... .......... 529 AAGGGTGTGC TAAGTCAATA GTAGACAACT ATTGTTGGAC CAAGGGAGTA ACATCTATAG 5587 .......... .......... .......... .......... .......... .......... 529 TTTCAACGTT TGCCAGCTTG CTAATTTTGG TTTATTTTTG GAGGATGGTG CAGCTTTTGA 5647 .......... .......... .......... .......... .......... .......... 529 AGTGCAATTT TGCCATCTTT TAATATCTAT TGTGTGGTAT ATGGTTCAAT TTTTGGTGTT 5707 .......... .......... .......... .......... .......... .......... 529 GCAATTTTCA AGATAGGACA GGACTTTTTG GTGTTTTTGG TTGGATAGTT ATTTTGACCA 5767 .......... .......... .......... .......... .......... .......... 529 TTCCGATGAA GTCTACCCAT TCAAGTTCTG TTTAAAAAAA AAAAGGGTCC AACCACTTGA 5827 .......... .......... .......... .......... .......... .......... 529 GTTCTGTTTC AAAAAAAAAA GTCTTAACCA TCCGAGTTTG TTAAATATTT GTCAGAGACC 5887 .......... .......... .......... .......... .......... .......... 529 AAATGCTCAC TTTTGGCAAA CTTAGAAAAC CCAAATTGTT GGGGGGTATA TTGAAGGACC 5947 .......... .......... .......... .......... .......... .......... 529 ACCTTGAACC TATACTCAAA CATAAGGAGC CATTTTTTCT CTCTCTCCAA GTTAGACACT 6007 .......... .......... .......... .......... .......... .......... 529 TCCTTTTGAC TTACTCTTTA ATCTTCAAGA TTTTGTGGTT TCCTGTAATA GCTGAAGCTA 6067 .......... .......... .......... .......... .......... .......... 529 CCTTCCATTT ATTTTTGTCC ATTTCTGTCT ACCTTGTCTC AGTCCATTCC AGATTGCCTC 6127 .......... .......... .......... .......... .......... .......... 529 TCTCTTTCTA TTGGAATTGA AGGATGTGCT GTGTGCATCT GGATTTTCTC CAATTCCAAC 6187 .......... .......... .......... .......... .......... .......... 529 ATAATCTGAT ATTGATTGAA AAGAGGGAAG TTAAGCTAGC TAACGAAGGG GTTGGGATCC 6247 .......... .......... .......... .......... .......... .......... 529 GCCTCGCCCT TAAAGATCCG CCCCTCGTTT CACTCTGAAA ATTTATTATC AGCTCCTTCT 6307 .......... .......... .......... .......... .......... .......... 529 GTTATTTAGC CATCTCTCTC CATAAAATTC TTTCACGTAC ATGAAAGTTA TTTCATATCC 6367 .......... .......... .......... .......... .......... .......... 529 TAGAGAGTGC GGTTGTATTG TCTCTCTAAA GAATCGTAGG ATCCATTGGA GATAAAATGA 6427 .......... .......... .......... .......... .......... .......... 529 AACAATTTTA AATGCCGAGT GTTCTGTTTC CTTTTTTTCC TTTGGTCGTT TCTCTTTCTG 6487 .......... .......... .......... .......... .......... .......... 529 CAGTGCTGTT ACTGCTTAGA ATACCTTTCG GTTCGCAGAA ATGATGTGCA AACTTTGTTG 6547 .......... .......... .......... .......... .......... .......... 529 TTTCCAACAG TTTGGCCATT GTATATATTG GGGTTGTTAA GTCTTTCTCT TTTATAGTAT 6607 .......... .......... .......... .......... .......... .......... 529 GCGTGACTCA TTTAAAATCA TCTTATATTA TGTTGATTAT TGTTATCCTC TTTTATTTGT 6667 .......... .......... .......... .......... .......... .......... 529 TAGATGAGAT TATTGTTATT ATTGATTCAT CTGAACATAT ATATATTTCA ATCTTGCAGC 6727 .......... .......... .......... .......... .......... .......... 529 ATGAGTTGCT TCGTGTTTTA TATCCTGTAT TTATTCATTG TTTCATGGAA CTTGTCGCTA 6787 .......... .......... .......... .......... .......... .......... 529 GAGGTTATAT TCAAGAAGGT ATACTTTGTC AGTTATGTTT TGGTTGTATT TTGATATTTG 6847 .......... .......... .......... .......... .......... .......... 529 TGAGAGAATT TTTAACACAA TTCTTTTATT TCCAGCACGA GCCTTTTTCA ATAGTTACCG 6907 .......... .......... .......... .......... .......... .......... 529 TGAAGACCAT GAGATGACGC ATCTGCGTGA TCTTCAGAAG TTAGAAGGCG TCCTCTCACC 6967 .......... .......... .......... .......... .......... .......... 529 TTCCCATCTA GAGGTACATC AATATCCTAG CAACTGTGTG GATGACCTTT TCCATGCTTA 7027 .......... .......... .......... .......... .......... .......... 529 AGTGTGTCAT AGATCACTAA ACTTATTCCG AAATGCAGGA AATGGAATTT GCTCATTCTA 7087 .......... .......... .......... .......... .......... .......... 529 TACGGGTGAG CAAAGTGAAC ATTAAGATGT GTCAGGTATT CTCTTGATCC TTTTGCTTCC 7147 .......... .......... .......... .......... .......... .......... 529 TCTGGTTGAA TTTTTCTGCT ACTATAGTGC ACACTAATGT CTCAACTGTG AAAGCCAAGT 7207 .......... .......... .......... .......... .......... .......... 529 GTGTCGGGGT TTGTTAGCAA TTGGTGACAA ATGCATATCG AGTTAGTAGT TACAAAGGAG 7267 .......... .......... .......... .......... .......... .......... 529 GAAAAGAAAC TAATGTGATA TTTCACTTTA GAGTGCATTA TCTTTCATTT CCTTCTCTTG 7327 .......... .......... .......... .......... .......... .......... 529 ACCACTTATT TTGCTGTGGA ACTTCAACTT TTTGACAAAA AATCCACCTC TTTCCAAATC 7387 .......... .......... .......... .......... .......... .......... 529 TTTTCTTTTG AAGCTGAACT TCTATTAGTT ATGTTGATGA AATAGCAAAC ACTGGTTCAT 7447 .......... .......... .......... .......... .......... .......... 529 TTTGTAGGTT TGTTGGAATT AACTACAACA TTTAGTCTAT TGTTCTCATG CCATGGATCT 7507 .......... .......... .......... .......... .......... .......... 529 TATCACCATG TATATTAAAG GAACAATCAT TTGTCTAATG GTTTTTCTAG TTTGGTGGAT 7567 .......... .......... .......... .......... .......... .......... 529 TTACGTGCAG TTTGATTACT GTTTTTTGGT CAATATACAT GTCTGGCACC ATTTGATTAC 7627 .......... .......... .......... .......... .......... .......... 529 TTTTTACCAC GCATACCTTT AGACTTAACT GGATTAGCCT TTTGATTTGC TTATTTTACT 7687 .......... .......... .......... .......... .......... .......... 529 CTGAAACAGT ACTCCTATGA CCTTCTGTTG CAATACTTGC ACAAGACAGA ATCTATTACA 7747 .......... .......... .......... .......... .......... .......... 529 ATGCTTGGGA TCATCAATGA GCGCATTAAT TTTCAAGGTG CACTTCCCAT TTTCGCAGTT 7807 .......... .......... .......... .......... .......... .......... 529 GCTTTCAACC TTTCAATTTG CAACTATGTT AAATTGACCA TTTTAATTTA GCGTAATCTT 7867 .......... .......... .......... .......... .......... .......... 529 TTTTGATTAA GTAAAGTATT TCATTAAGAA AACAAGGCCG AGATGACTGT AAACAAGAGA 7927 .......... .......... .......... .......... .......... .......... 529 TATACCCTAA AAGAAGAAAC CTACAAAAAT ATGGTTCACT CTAAAATACA CCCAATCCTC 7987 .......... .......... .......... .......... .......... .......... 529 TATACTAATA GGAACGACAT GGTGCACCAA AAGAAAATAG GGAGTGGAGA CTGCTACTTA 8047 .......... .......... .......... .......... .......... .......... 529 GTTGAGCAAG GCTCATCTCC ATTCCTTCAA AAGCCCCCAT ATTTCTCTCT CCAAATGACC 8107 .......... .......... .......... .......... .......... .......... 529 CACGTTAAAG CAAGAGAAGT AACATTCCAA GCCTTTTGCC TTCTTCTCCT GGCACCAGTT 8167 .......... .......... .......... .......... .......... .......... 529 GTCGAACTAA ACATCAACTC TTTCACGGAT CTTGGCATCA GCCCTGAAAT GCCGAACCAT 8227 .......... .......... .......... .......... .......... .......... 529 CTAAAGATAC CCTACCATAA CCTCATTGCT AGATTGCAAT GTAGCATAAT ATGATCCACG 8287 .......... .......... .......... .......... .......... .......... 529 ATCTCACCTG CCTCCTTACT AAGGAAACAC CAACTAATAC AGACAACTTT CCATTTCCTA 8347 .......... .......... .......... .......... .......... .......... 529 ACATTCTCCG CCGTCAAAAT CACCCCTCTA TAAACTAACC AAGTGAAGAA GCACCCCTTC 8407 .......... .......... .......... .......... .......... .......... 529 CTTGGAATCC TAGGAATATC GTAAATATTT ATTCCACCAT GAAGTGTTTA GGAAGAAGCA 8467 .......... .......... .......... .......... .......... .......... 529 GTTACATCTT TCCATTTATA TTGGTATGAT AGTGAAACCA TATGAGAAGG AAGAAGAGAA 8527 .......... .......... .......... .......... .......... .......... 529 ATGTCTTTTC CTTGACCATT GTCCTTTAGA ACAAATGCTC ATCATTACAT CCACTGAATA 8587 .......... .......... .......... .......... .......... .......... 529 AAGACGGGGA AAGGAAAAGC GTTCCAATTT AAATTCAACT TCTTTCTGTC AGATCATTGT 8647 .......... .......... .......... .......... .......... .......... 529 TTATTTTGTC CCTCCATGAT CACTTAACCA TCTCAATCCT CTGGAACCAA ATTACATGAC 8707 .......... .......... .......... .......... .......... .......... 529 TAGAGGGGAA CTGTCATGTT TATTATAAAT AGTGGTGAAT TTTACCATAA TTACTTCCTT 8767 .......... .......... .......... .......... .......... .......... 529 TATATTGCTT GGTTCTTCCA TAGGTGTGCT CTCTAGCTTT TGTTTCTTGG TTCAAGGCTT 8827 .......... .......... .......... .......... .......... .......... 529 GTTACTAACT CGAACAAACT CCAATACATT TTCCTTGGTA GCTAAAATTT ATCAAGTTAC 8887 .......... .......... .......... .......... .......... .......... 529 AGGGAGAAAA AGAAATGAGA AAAGAAGTCT TTGATAAGAT ATTGCAGAGG TGGCTGTTTT 8947 .......... .......... .......... .......... .......... .......... 529 TGTTGCTTAA TTGTCATGTT ATCGTGGGAG AACATGGTCA CATAGGAGGT GTAACAAGTG 9007 .......... .......... .......... .......... .......... .......... 529 GTGGTTTAAC TAGCTATAGT GACTATGTGC CTTCACTGCT GCCTCTATTG GGTTCTGACC 9067 .......... .......... .......... .......... .......... .......... 529 AAGGGAGGTT GCTAAAATTA AGGTCAAAGA TTTATTGGAA TGAAGAACAG TAATAAGAGT 9127 .......... .......... .......... .......... .......... .......... 529 GAGTTATAGA TGCAGAGGGT ATTCCAGATC TATTTATAGG CCTTGAATTC TTTTCCTCTT 9187 .......... .......... .......... .......... .......... .......... 529 TATCTCTTTC ATTCGGATTC CACTTTTGCT TGTGCCAAGA AATGCCAAAG TCACTAGATG 9247 .......... .......... .......... .......... .......... .......... 529 CACATGATTT ACTCAATTAA GTTCATGGTA TGTTTGGTGC AAGGCCGAAG ACATGTTCTT 9307 .......... .......... .......... .......... .......... .......... 529 CCCAGGTAGT CTGGCAATGT TCTAGCAAAA AATTGTCCTA AATGCAACCC TATGAATAGT 9367 .......... .......... .......... .......... .......... .......... 529 TTAGTGGCCC ATGATCCCCC TGTGCCTTGC CTATTACTCA TTATATAATC ATATGGTATA 9427 .......... .......... .......... .......... .......... .......... 529 ATTTTAGAGC TATGTATTTA TTAAATTTAA GTACAACATG AAGCTAATTT GTATCAAATG 9487 .......... .......... .......... .......... .......... .......... 529 ACAGTTTCTC CTGGACAGCC TGGCTCTATA TCTGGTGATA CGGAAGTTGT AACTCTTGTT 9547 .......... .......... .......... .......... .......... .......... 529 GCAAGTGGCC ATGATGCTAG TCTCATAAAT CAGAAAGAAG TTCTTTGGGG GGTAAGCAAA 9607 .......... .......... .......... .......... .......... .......... 529 CAGTCAATAC CAATAATTTA ATCTTTATGT TTTTGGATTG GATTGTGTAG TAAATATCAG 9667 .......... .......... .......... .......... .......... .......... 529 CTTTTGACCA CTTTACCTGT CAATTTCTTG AGCTATTTGA TGAATATTCT TGTTTGTTGG 9727 .......... .......... .......... .......... .......... .......... 529 TTAACTGACC ATGAAACAAT TAAATTGGCC AGCTGGAAGT CTTCCCATGC CAACGTATGG 9787 .......... .......... .......... .......... .......... .......... 529 AAGAATGGAT ACCCCCCCCC CCCCCCCAAA AAAAAAAACA AGAAACAATA TAACCAATTC 9847 .......... .......... .......... .......... .......... .......... 529 CTTTAACAGA ACGTAGTGCA GTGCATTGAG TTCTTGAGAG GTAGGGTAAT TAGTGGGAAA 9907 .......... .......... .......... .......... .......... .......... 529 ATAACAATTC TTTGGATTGC ATTACCTTTG AAGTATGTGT TTCAGAGTAT TGAGGATAAA 9967 .......... .......... .......... .......... .......... .......... 529 ATCACATTAT GATCTAAAAT TGTTCTATCA AGATCGGTTT TAGGAAAAAG AAAAGGTGGC 10027 .......... .......... .......... .......... .......... .......... 529 CCTATACAAC ATTACCAGTT CCCAAAAAAG AAGAAGGGAA AAGGGCCCTG CAGTTCATCA 10087 .......... .......... .......... .......... .......... .......... 529 AAGTAATTGG AGACCATCTG GGTTGGGTCT GGGACTAGTT CACCACTATA AAACATTTCT 10147 .......... .......... .......... .......... .......... .......... 529 CTTATTCTAT GTTTTATAGC TATGGCTTAT GGGTATGGCA AAGCGGTCAA TAAAGTGGGT 10207 .......... .......... .......... .......... .......... .......... 529 AAACTTATGG GAGATCAGGG TTCAAGTTCC TGTAGAAACA AAGGCGCTAG GTGATTTTTT 10267 .......... .......... .......... .......... .......... .......... 529 CTCGTCTACC TAAGCTTTGG TGGGCAGATA CTGTGTATAT ACTGGTGGAA GGTAGTAGAT 10327 .......... .......... .......... .......... .......... .......... 529 ACAGATTCAT GCAAGTTTAC TGAACAACCC ATATTAAATT GGAAAAAAAA ATAAAACGAA 10387 .......... .......... .......... .......... .......... .......... 529 GAGAATGTGG AGCTGCAAGT TATAGACAAG TGATAAGCTT ACTCCTTCGT GTATAAACTA 10447 .......... .......... .......... .......... .......... .......... 529 ATATTATCTA AGGAGAGTTT ATCACTATCA ATCCTTTGGG GTGGCCCAGT GGTTTGAGTT 10507 | |||||||| | .......... .......... .......... .......... .........T GGTTTGAGCT 540 TGTGACTTCC ATGTTGGAGG TCTCAAGTTC GAAACCCCTT GCCAGCGAAA GCAAGGAGTT 10567 | ||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGGACTTCC ATGTTGGAGG TCTCAAGTTC GAAACCCCTT GCCAGCGAAA GCAAGGAGTT 600 TGCCTTCTGG GTCGAGCTCG TCGCACCAGG TTTGTCTAGT GCGTGTTACC TCTCATATGT 10627 |||||||||| ||||||||| | | || || || | | | | ||||| |||| ||||| TGCCTTCTGG ATCGAGCTCG T-G--CCTGG --TG-C--G- G-G--TTACC TCTCCTATGT 648 GGTTTGCGAG CTATTGCATA GGAGCGGGGT TTTTACCCTG TGCGCACCC- AAAGGGTAGC 10686 ||||| |||| |||||||||| || || ||| |||||||||| | ||||||| |||||||||| GGTTTACGAG CTATTGCATA GGGGC-GGG- TTTTACCCTG TACGCACCCA AAAGGGTAGC 706 GGCTGTGGGT TTCC 10700 ||||| |||| |||| GGCTGCGGGT TTCC 720 hqPGS_C06HBa0046G10.1-4+_SGN-U315611- (10497 10700) ******************************************************************************** EST sequence 5 +strand 1533 n (File: SGN-U319242+) 1 TTGAGTAATG CATCATTGCC CTCTGTTAGC TTCTATACAT TTGTTAATAC ACACAATGGA 61 CTAAACTGTG CATCAATATC ACATGATGGA TCACTAGTGG CTGGTGGATT CTCAGATTCA 121 TCTGTGAAGG TCTGGGACAT GGCAAAGCTT GGGGAACAAA CTGGTCCATC TTTTTTGCAG 181 GGGGAGACTG ATTCACCTTC AAGTGAGCAT GTGCTTGGCG CAAATGGTGG AAGAAGATGT 241 TATACATTAC TTCAGGGCCA TTCAGGGCCT GTTTATTCTG CATCATTCAG TCCTCACGGG 301 GATTTTCTTC TTTCTTCATC ATCAGATTCA ACTGTTCGCT TATGGAGCAC AAAGTTAAAT 361 GCTAATGTTG TTTGCTACAA AGGCCACAAT TACCCAGTAT GGGATGTTCA GTTTAGCCCA 421 GCTGGACATT ATTTTGCCAG TTCTTCACAT GACCGCACTG CAAGGATCTG GTCTGTGGAC 481 AGGATACAGC CTCTAAGAAT AATGGCCGGA CACTTGTCAG ATGTAGATTG TGTGCGATGG 541 CACGCAAATT GCAATTACAT TGCAACCGGA TCAAGCGACA AAACTGTACG CTTGTGGGAC 601 GTCCAGAGTG GTGACTGTGT CAGAATTTTC ATTGGTCATA GGAGTATGAT CCTATCATTG 661 GCAATGTCTC CTGATGGTCG ATATATGGCA TCCGGTGATG AAGATGGAAC AGTCATGATG 721 TGGGATCTCT CAAGTGGACG TTGTATTACT CCTTTGACCG GTCATTCCTC TTGTGTGTGG 781 TCACTTGCTT TTAGTGGTGA AGGTTCACTT CTTGCATCGG GCTCTGCGGA TTGCACTGTA 841 AAATTATGGG ATGTAACCAC AAGCACCAGA GCGCCACTAA AAGAAGAGAA CAAATCTGGA 901 GGTAACAATA GGCTTCGGTT ATTGAAGACC CTACCTACCA AAGCTACACC AATCTATGCT 961 TTGCACTTTT CACGAAGAAA TCTTTTATTT GCTGCTGGAG CTTTCTCGAA AAGTGCACGA 1021 GTCCCTTGCT TTAAAGTCTC TTGACGTGAG ATTACATCAT GGTTCCCTTG CAAATTTTGG 1081 TGCAATCATC AATGGCAAGT TTTACTTCTC AGACCTCGGT TTTGTTAGAG GAGCAACTCA 1141 TGTTGGTGAC ACGTGCATCT CACAATACAA TTTTGCATCA CATGGTGTAA TTTGGAATGT 1201 GGAGGTCTTT TATTTTCTAT GGTGGATGAA CGTCGGATTT GTAAATGCTT ATTTAATGTA 1261 TGTCCTTAAA ATGACGATGT TCCTGTAACC CTGATACCAT TGCTTATCCC ATTGGTGGAA 1321 TATTGGAAGC ATGGGCAGAA AGGTATACAA TTTAGCATCT TCTAAAACTA TATTTTGGGA 1381 GTAGGATGTC TCAAGCATTT GTGGTTTTGT GTATGTTAAC CATGTTTGTT TACAGACCCT 1441 TTCCCTGTTT CTACCTTGTG GATTATGTAT GAATTTTAGC TGAACTAAAA AGTTTGAAAT 1501 TCGTTTGGAT TAGCTTAAAA AAAAAAAAAA AAA Predicted gene structure (within gDNA segment 12183 to 19728): Exon 1 12783 12841 ( 59 n); cDNA 1 59 ( 59 n); score: 1.000 Intron 1 12842 12933 ( 92 n); Pd: 0.980 (s: 1.00), Pa: 0.527 (s: 1.00) Exon 2 12934 13003 ( 70 n); cDNA 60 129 ( 70 n); score: 1.000 Intron 2 13004 13140 ( 137 n); Pd: 0.906 (s: 1.00), Pa: 0.980 (s: 1.00) Exon 3 13141 13180 ( 40 n); cDNA 130 169 ( 40 n); score: 1.000 Intron 3 13181 15923 (2743 n); Pd: 0.995 (s: 1.00), Pa: 0.000 (s: 1.00) Exon 4 15924 16088 ( 165 n); cDNA 170 334 ( 165 n); score: 0.994 Intron 4 16089 16221 ( 133 n); Pd: 0.992 (s: 0.98), Pa: 0.952 (s: 1.00) Exon 5 16222 16298 ( 77 n); cDNA 335 411 ( 77 n); score: 1.000 Intron 5 16299 16516 ( 218 n); Pd: 0.978 (s: 1.00), Pa: 0.764 (s: 1.00) Exon 6 16517 16633 ( 117 n); cDNA 412 528 ( 117 n); score: 1.000 Intron 6 16634 17684 (1051 n); Pd: 0.880 (s: 1.00), Pa: 0.958 (s: 1.00) Exon 7 17685 17950 ( 266 n); cDNA 529 794 ( 266 n); score: 1.000 Intron 7 17951 18062 ( 112 n); Pd: 0.000 (s: 1.00), Pa: 0.990 (s: 1.00) Exon 8 18063 18158 ( 96 n); cDNA 795 890 ( 96 n); score: 1.000 Intron 8 18159 18251 ( 93 n); Pd: 0.960 (s: 1.00), Pa: 0.000 (s: 1.00) Exon 9 18252 18327 ( 76 n); cDNA 891 966 ( 76 n); score: 1.000 Intron 9 18328 18407 ( 80 n); Pd: 0.975 (s: 1.00), Pa: 0.489 (s: 1.00) Exon 10 18408 18957 ( 550 n); cDNA 967 1516 ( 550 n); score: 1.000 PPA cDNA 1517 1533 MATCH C06HBa0046G10.1-4+ SGN-U319242+ 0.999 1516 0.989 C PGS_C06HBa0046G10.1-4+_SGN-U319242+ (12783 12841,12934 13003,13141 13180,15924 16088,16222 16298,16517 16633,17685 17950,18063 18158,18252 18327,18408 18957) Alignment (genomic DNA sequence = upper lines): TTGAGTAATG CATCATTGCC CTCTGTTAGC TTCTATACAT TTGTTAATAC ACACAATGGG 12842 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| TTGAGTAATG CATCATTGCC CTCTGTTAGC TTCTATACAT TTGTTAATAC ACACAATGG. 59 TAAGTTTTCA TGATCTTGAA TCTTTTAAGT GTGGAATTCG TATTCAGGAA CATATCCTAA 12902 .......... .......... .......... .......... .......... .......... 59 TCTCAGTGAG TTAATCTGTA AATGTCTGTA GACTAAACTG TGCATCAATA TCACATGATG 12962 ||||||||| |||||||||| |||||||||| .......... .......... .......... .ACTAAACTG TGCATCAATA TCACATGATG 88 GATCACTAGT GGCTGGTGGA TTCTCAGATT CATCTGTGAA GGTGCTTGTA GCTTCTGAAT 13022 |||||||||| |||||||||| |||||||||| |||||||||| | GATCACTAGT GGCTGGTGGA TTCTCAGATT CATCTGTGAA G......... .......... 129 GACGTTGAAA TTATGTTGTC ACAAATTACA GTATCTGTTG ATCCTTGATC ATCTTCTTAT 13082 .......... .......... .......... .......... .......... .......... 129 CTTTTTTTTG GAACTGGTAA CTTTGATCAT CTTCTAATCT AAGTCCCCCA TTTTACAGGT 13142 || .......... .......... .......... .......... .......... ........GT 131 CTGGGACATG GCAAAGCTTG GGGAACAAAC TGGTCCATGT AAGTCCAATA TGATGGTCCT 13202 |||||||||| |||||||||| |||||||||| |||||||| CTGGGACATG GCAAAGCTTG GGGAACAAAC TGGTCCAT.. .......... .......... 169 CAGCTCCTTT TCAATGTATT GTTATTTCAT GTTTCAAGAT GTTTTAGTGA ATAGAGGTTG 13262 .......... .......... .......... .......... .......... .......... 169 AAAAGGTCCC TTTTAATACT ACTCCTAGTC ACAGTATATC TCGCCAGGAC AGCAAGAAAG 13322 .......... .......... .......... .......... .......... .......... 169 ATTTATTCTT TGCTGCTTTA ATTTATTTGA TAAGTAGATA AATTTTATTT CACTAAGAAA 13382 .......... .......... .......... .......... .......... .......... 169 CTGCACTAGG GTTGTGAAGT TTGTTACATC AGAAATTTGC TTAGCAGAAA CATGATTAGT 13442 .......... .......... .......... .......... .......... .......... 169 TATGAAGGTT TCTCGACTGA ACATATAAAT GCAGCTTTAC ATTTCTGATG GAAGTATTTC 13502 .......... .......... .......... .......... .......... .......... 169 TTGAACTCCT TGCATTTTTC AATTAGGTAA ATAATTTTAA TCGAAAAGTC TCCTGTATAC 13562 .......... .......... .......... .......... .......... .......... 169 AATGCAGTAC ACAAAAAATA ACTATATCAG AATATGATTC TAACAAACAA TATCCTATTG 13622 .......... .......... .......... .......... .......... .......... 169 TTTTTTTTTT GGAGAAAGTA TCAGAATATG ATTCTAACAA ACAATATCCT ACTGTTTTTT 13682 .......... .......... .......... .......... .......... .......... 169 GTTTTTTTTG AGAAAGTAAC ATTTGTATTA AAGAAACTTG GTAAAAAGGT TGTGCTGGTA 13742 .......... .......... .......... .......... .......... .......... 169 ACCATGTGCA GCTTCCAAAA GTATTGGGAA TCCTTTTACT TCTCACTAGG GATCTATCAT 13802 .......... .......... .......... .......... .......... .......... 169 GTCATATTGG ATTCTACATC ATTTACATAA TCTCTTTGCA CCAAAAACAT AAACAACACA 13862 .......... .......... .......... .......... .......... .......... 169 AAACAATTCA TCTCTATCAT TTGAATGAGG CTATTGCTGC CTTCAAAACA TCTAGGGTTC 13922 .......... .......... .......... .......... .......... .......... 169 CTTTCCTTCA AAGCTGTCAA CCAAATGCTG GAGTGAGATC TCCCTGATTG TGCCAACATC 13982 .......... .......... .......... .......... .......... .......... 169 TCAGTAAATC AGCTGTAGTT CTTGGCACTG TCCATCCGAG TCCAACTATG CTTGGGAAGA 14042 .......... .......... .......... .......... .......... .......... 169 GTTGCTACAA TTGAGCAGTT ACACCAAGAT GTAAGAACAG GTGTCTGTTA GACTCTTTAA 14102 .......... .......... .......... .......... .......... .......... 169 GTCTGCACAG TATTACTAAC ATCTGGTGCT CAACTGGAAT CCTCTCTTCT TTAAATTTAT 14162 .......... .......... .......... .......... .......... .......... 169 CGAGTTAGAC TGGCCTATAA GAACTTCACT AATGCACCAA AAAGAATCAA GGGATTGAAA 14222 .......... .......... .......... .......... .......... .......... 169 AGCTATTCCT TGAGTCTACA TACTCGTTTT CTATCTCTTA AAAAGTCTTG AACCACTCCT 14282 .......... .......... .......... .......... .......... .......... 169 ATAATGTTGA AGTGATCAAT AATTGAGAAT TTTGTCACAT GTCTTGTTAT GACGCTCATC 14342 .......... .......... .......... .......... .......... .......... 169 ATGTATGCTA GTGGTTTAGA TACTCCTAAG GAAAAGGCAA ACATTTTGAA TCCAAATGTT 14402 .......... .......... .......... .......... .......... .......... 169 AACATGAGGT TTTTTTTTGA GGATAGTAAC ACTAATCTAA ATATTCACAG CTAGACTACA 14462 .......... .......... .......... .......... .......... .......... 169 TCCAAAATAT GTAGTCCCCT TCAAAAGGTA TTGCAGTCTA GTAATATTGC CGTCTATCAC 14522 .......... .......... .......... .......... .......... .......... 169 CTATATTTCT TACAAATAAT CCAAGACATC CCAGATATCT TGCGCTTGGA CTAAAAAGTT 14582 .......... .......... .......... .......... .......... .......... 169 CTCTTTTCAC CAAAAATAAA ATAAAGCTAG AGAATTCATC TTGAAGCTCT GAAGTCCATT 14642 .......... .......... .......... .......... .......... .......... 169 CTGCTTGTCT TCAAAGCACC TCTGGTTAGA GTTTTCTCAA AAGGCCTGCA TATCCACTAT 14702 .......... .......... .......... .......... .......... .......... 169 GGTTCAGGGC CGATCATAAT CCCTATGATG TGATAATTCC GTTGAATAAG GTGGAATGTA 14762 .......... .......... .......... .......... .......... .......... 169 AGTAAAAGAA ATTCATTTAT AAATACCAAT TAAGTGCCAA ACAATGCGTA GATGTCCATG 14822 .......... .......... .......... .......... .......... .......... 169 TTACTTGGAA AAGTTTCCAT ATGATGCTAT ATTTCATGTT CTTTATTCAT TCTTTGTTAT 14882 .......... .......... .......... .......... .......... .......... 169 TTCGTATTAA TTATTTACTT CTTATTACAG CCTTTTATAT AGTTGAGCTT GTGCTAAGTT 14942 .......... .......... .......... .......... .......... .......... 169 GTTTATTCTT TTGCACCATC AGTAATATTC TGAATGTTGC ATGTGATGTA TCAGGTTGAG 15002 .......... .......... .......... .......... .......... .......... 169 GGTAGTTTTG CTATAAAAAT TGATTCCACC TTTATCTTGT CCTAAATTCT AAGTTGGATT 15062 .......... .......... .......... .......... .......... .......... 169 TTCTTTTCTG ATACTCTCAC TACAATCCCT CAGGAAAATC TAGTTATATT GTAAAACTGG 15122 .......... .......... .......... .......... .......... .......... 169 CATATTTGCC TTGAGCTGTC ATATTCTAAC TTGCAGAAAG GAAATAAGAC AAATAGCTCA 15182 .......... .......... .......... .......... .......... .......... 169 TAGTTCCTTA CAAATGCACG CCTTTGGAGC CAGCTGTTAT GTTATTCTCT AAGGCATATC 15242 .......... .......... .......... .......... .......... .......... 169 AGCAGTCAAG ATTGATTCTT AAACTGATTT TTCAGCTCCA TGAATTTGGT CTATTGGTAA 15302 .......... .......... .......... .......... .......... .......... 169 GAGCACATCA TGTAATGTTT GAGTTAGAGG CATGTCACGA GTTTGAACCC AACCACTTCA 15362 .......... .......... .......... .......... .......... .......... 169 AAAAACATAG TTTTTAAGTA TAGAATGTGA GAGGGGCGAC TCCAATATCC ACCGAGTTTT 15422 .......... .......... .......... .......... .......... .......... 169 GGACTGCGTC GGCTAGCCCT CGGGGATTTC TGGGTTATCA ATTTTCTTAA AAAAGCTGCT 15482 .......... .......... .......... .......... .......... .......... 169 ATCTCCATAC TAATTGCTTA TTGAGGGTTA TCAATTTTCT TATAAAAGCT GCTATCTCCA 15542 .......... .......... .......... .......... .......... .......... 169 TACAAATTGC TTATTGAGGA TGAATTTGAG CAGTTACTGA AGCAACTAAT TTTGAATAAT 15602 .......... .......... .......... .......... .......... .......... 169 TTGTCCTTCA AAAATAAAAC CCACATATCA AGAACTAAAT GAAAGGTTAT TGCTTCAGGG 15662 .......... .......... .......... .......... .......... .......... 169 GTGTAGTTGT TCTTTAATAT CTATAAAAGT ATGTGAAAGC AATTTAACCA AGGATTAGTT 15722 .......... .......... .......... .......... .......... .......... 169 TGTTTGACTC GCTGAAGCAA AAGAAGGCTA CTACTTTGGG GCCAGGGTAG CCATAGATAG 15782 .......... .......... .......... .......... .......... .......... 169 TCTGACGTCT TAGAGTATTG CTGTAAACAA TCAACATCTT GCAAAACATG TCATTGTTAA 15842 .......... .......... .......... .......... .......... .......... 169 TGTGTGCCCC CCTGTCTCTC ATACACACAA AAAATTGCCG AAACAGAAAA AAGAATGGTT 15902 .......... .......... .......... .......... .......... .......... 169 GATGAACAGT GCTAGAACCA GCTTTTTTGC AGGGGGAGAC TGATTCACCT TCAAGTGAGC 15962 ||||||||| |||||||||| |||||||||| |||||||||| .......... .......... .CTTTTTTGC AGGGGGAGAC TGATTCACCT TCAAGTGAGC 208 ATGTGCTTGG CGCAAATGGT GGAAGAAGAT GTTATACATT ACTTCAGGGC CATTCAGGGC 16022 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGTGCTTGG CGCAAATGGT GGAAGAAGAT GTTATACATT ACTTCAGGGC CATTCAGGGC 268 CTGTTTATTC TGCATCATTC AGTCCGCACG GGGATTTTCT TCTTTCTTCA TCATCAGATT 16082 |||||||||| |||||||||| ||||| |||| |||||||||| |||||||||| |||||||||| CTGTTTATTC TGCATCATTC AGTCCTCACG GGGATTTTCT TCTTTCTTCA TCATCAGATT 328 CAACTGGTAT GATATCATAT GACTTTGATT GCTATTAGCT CTACAATAGT TCTTATTCAT 16142 |||||| CAACTG.... .......... .......... .......... .......... .......... 334 ATGGATTATG ATAGTTACTG AAGTTCTATA TGCTTACTCT ATAACCATGT GACCTTTTTG 16202 .......... .......... .......... .......... .......... .......... 334 GCTAATTATT TCTATGCAGT TCGCTTATGG AGCACAAAGT TAAATGCTAA TGTTGTTTGC 16262 | |||||||||| |||||||||| |||||||||| |||||||||| .......... .........T TCGCTTATGG AGCACAAAGT TAAATGCTAA TGTTGTTTGC 375 TACAAAGGCC ACAATTACCC AGTATGGGAT GTTCAGGTAG GTTGCTAGTT TGTCATTTAT 16322 |||||||||| |||||||||| |||||||||| |||||| TACAAAGGCC ACAATTACCC AGTATGGGAT GTTCAG.... .......... .......... 411 TTTGTTTAAT GATTCCTTTT TGGATGTAAT TGTGGTAATA TATTTGCAAT CTCTTTAAGT 16382 .......... .......... .......... .......... .......... .......... 411 AACTCACCTA ATTGGTTGTT AAACAGAGAA CTGCCCGAGT TAATGCATTT TTTGCTTTCT 16442 .......... .......... .......... .......... .......... .......... 411 CATGGTAACT GTAGATAAAA GTTGTCACAA TGGGCAAATA TATGTTTGGT TTTCACTTCA 16502 .......... .......... .......... .......... .......... .......... 411 CATCTTGAGT GCAGTTTAGC CCAGCTGGAC ATTATTTTGC CAGTTCTTCA CATGACCGCA 16562 |||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ....TTTAGC CCAGCTGGAC ATTATTTTGC CAGTTCTTCA CATGACCGCA 457 CTGCAAGGAT CTGGTCTGTG GACAGGATAC AGCCTCTAAG AATAATGGCC GGACACTTGT 16622 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGCAAGGAT CTGGTCTGTG GACAGGATAC AGCCTCTAAG AATAATGGCC GGACACTTGT 517 CAGATGTAGA TGTGAGTATC TAGTTTGTGC TCTATGCCAT GGGAACTATT TATTTGATCT 16682 |||||||||| | CAGATGTAGA T......... .......... .......... .......... .......... 528 GATCTACGTT GGCATCTTTA TCACTCTGTG GCTGTATAAT CAATCTTAGT TACTTGACCT 16742 .......... .......... .......... .......... .......... .......... 528 ACTTTTCATT TTCGTCCTCT ATAATCACTT GGCCTGTTAT AAAGTGACAT CTTTTCCCCA 16802 .......... .......... .......... .......... .......... .......... 528 TGTAAAAAAA ATGAAATGGC TAAGTTTTCC GAGTGCTCAA ATACCCAGAC ATAGGGGGCC 16862 .......... .......... .......... .......... .......... .......... 528 ATCTTTCCAT TTTGTGAGGC CCCATAATGT TGGCCACCAC TGATACTTTG GCAATTACAA 16922 .......... .......... .......... .......... .......... .......... 528 GAAGTTAAGT TCATTAAGTA TTCTAATTTT TGAACTTCTT GTGATGTTTT CAGGCGTACA 16982 .......... .......... .......... .......... .......... .......... 528 CTTAACTTTT CGACTATCAA TTTAGTTCTT TTCTTAAACT ACTGCTAATA CATTTGATAA 17042 .......... .......... .......... .......... .......... .......... 528 GTTCAAATGA CATCTTAAAG TCCATTCCAG TCAAATATCT CATATAAAAT GGGACAGATG 17102 .......... .......... .......... .......... .......... .......... 528 GAGAGTATAA TGTTTCTTTT AGCTTTGATT TGGTATCTTC TCAACAACAG TCCACACTTC 17162 .......... .......... .......... .......... .......... .......... 528 ATTAACTTTT ACTTTTTAGT GTAACTCTTT CTTTTGCCTT TTTTATCTTT TCACCAACAA 17222 .......... .......... .......... .......... .......... .......... 528 TCCTCCCAAA ATAGTGATGT TTTTTGAAGG ATCCGATTTG ATTGCGGCAA TAATTTTGGA 17282 .......... .......... .......... .......... .......... .......... 528 GAGACTGAGC GCATAGGGAA GAGTAACTTT TTTTATAACT TGGATTATTA ATCTGGGAAG 17342 .......... .......... .......... .......... .......... .......... 528 GCCTTACCTA GTTTGTACCC ATGTCCCATT TGTGACTACT AATTTTGCAA GAAAAGGTTA 17402 .......... .......... .......... .......... .......... .......... 528 AGTTCTATAC ATTATATCAG AGATACACAG ACAATAGACA TTAAATAAAT TACTTAAAAC 17462 .......... .......... .......... .......... .......... .......... 528 TAATTAATGT ATTTAATTAA TTCCAAACAA GTTGTCATGC TTTACTAAAA AGATTGAAGG 17522 .......... .......... .......... .......... .......... .......... 528 TTGAATATTT TATCTGGAGA GATTGGGCAC TAATAAAATG CACTTACCAT AACCATATCA 17582 .......... .......... .......... .......... .......... .......... 528 GGGTAATTTT TGATTTGGCA TGGAAATTTT CAGTTACTTA GATTTCTTGC AATTTCCTTT 17642 .......... .......... .......... .......... .......... .......... 528 CTATTGACAT AAATTTGAGA GGATGTTAAA TTCATCATGT AGTGTGTGCG ATGGCACGCA 17702 |||||||| |||||||||| .......... .......... .......... .......... ..TGTGTGCG ATGGCACGCA 546 AATTGCAATT ACATTGCAAC CGGATCAAGC GACAAAACTG TACGCTTGTG GGACGTCCAG 17762 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATTGCAATT ACATTGCAAC CGGATCAAGC GACAAAACTG TACGCTTGTG GGACGTCCAG 606 AGTGGTGACT GTGTCAGAAT TTTCATTGGT CATAGGAGTA TGATCCTATC ATTGGCAATG 17822 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTGGTGACT GTGTCAGAAT TTTCATTGGT CATAGGAGTA TGATCCTATC ATTGGCAATG 666 TCTCCTGATG GTCGATATAT GGCATCCGGT GATGAAGATG GAACAGTCAT GATGTGGGAT 17882 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTCCTGATG GTCGATATAT GGCATCCGGT GATGAAGATG GAACAGTCAT GATGTGGGAT 726 CTCTCAAGTG GACGTTGTAT TACTCCTTTG ACCGGTCATT CCTCTTGTGT GTGGTCACTT 17942 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCTCAAGTG GACGTTGTAT TACTCCTTTG ACCGGTCATT CCTCTTGTGT GTGGTCACTT 786 GCTTTTAGGT AGGGATAGAA ATGAACTTAA CCTTAAGTTT GTGTACGCTC AGAGATGCAC 18002 |||||||| GCTTTTAG.. .......... .......... .......... .......... .......... 794 TTGAGTATGA AGTTCATTGA ATATAGATTA TATTTTTGAA GCTTTTTTGT CTTATTTCAG 18062 .......... .......... .......... .......... .......... .......... 794 TGGTGAAGGT TCACTTCTTG CATCGGGCTC TGCGGATTGC ACTGTAAAAT TATGGGATGT 18122 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGTGAAGGT TCACTTCTTG CATCGGGCTC TGCGGATTGC ACTGTAAAAT TATGGGATGT 854 AACCACAAGC ACCAGAGCGC CACTAAAAGA AGAGAAGTAA GTATTAATGA AGCAGACATT 18182 |||||||||| |||||||||| |||||||||| |||||| AACCACAAGC ACCAGAGCGC CACTAAAAGA AGAGAA.... .......... .......... 890 TACTGTGGCA TTTGTTTTCT CTTAGATTGC TGCTAATACC AGCCCTCTCT CTCTCTATCT 18242 .......... .......... .......... .......... .......... .......... 890 ATTGAACAGC AAATCTGGAG GTAACAATAG GCTTCGGTTA TTGAAGACCC TACCTACCAA 18302 | |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .........C AAATCTGGAG GTAACAATAG GCTTCGGTTA TTGAAGACCC TACCTACCAA 941 AGCTACACCA ATCTATGCTT TGCACGTAAG AATTGTTATG CTTGCTTCTT TCTGTGGCTT 18362 |||||||||| |||||||||| ||||| AGCTACACCA ATCTATGCTT TGCAC..... .......... .......... .......... 966 TATTATTGGA TCCTCTAAAA GTTGCATGTT ATACTCTGTG AGCAGTTTTC ACGAAGAAAT 18422 ||||| |||||||||| .......... .......... .......... .......... .....TTTTC ACGAAGAAAT 981 CTTTTATTTG CTGCTGGAGC TTTCTCGAAA AGTGCACGAG TCCCTTGCTT TAAAGTCTCT 18482 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTTTATTTG CTGCTGGAGC TTTCTCGAAA AGTGCACGAG TCCCTTGCTT TAAAGTCTCT 1041 TGACGTGAGA TTACATCATG GTTCCCTTGC AAATTTTGGT GCAATCATCA ATGGCAAGTT 18542 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGACGTGAGA TTACATCATG GTTCCCTTGC AAATTTTGGT GCAATCATCA ATGGCAAGTT 1101 TTACTTCTCA GACCTCGGTT TTGTTAGAGG AGCAACTCAT GTTGGTGACA CGTGCATCTC 18602 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTACTTCTCA GACCTCGGTT TTGTTAGAGG AGCAACTCAT GTTGGTGACA CGTGCATCTC 1161 ACAATACAAT TTTGCATCAC ATGGTGTAAT TTGGAATGTG GAGGTCTTTT ATTTTCTATG 18662 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACAATACAAT TTTGCATCAC ATGGTGTAAT TTGGAATGTG GAGGTCTTTT ATTTTCTATG 1221 GTGGATGAAC GTCGGATTTG TAAATGCTTA TTTAATGTAT GTCCTTAAAA TGACGATGTT 18722 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGGATGAAC GTCGGATTTG TAAATGCTTA TTTAATGTAT GTCCTTAAAA TGACGATGTT 1281 CCTGTAACCC TGATACCATT GCTTATCCCA TTGGTGGAAT ATTGGAAGCA TGGGCAGAAA 18782 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCTGTAACCC TGATACCATT GCTTATCCCA TTGGTGGAAT ATTGGAAGCA TGGGCAGAAA 1341 GGTATACAAT TTAGCATCTT CTAAAACTAT ATTTTGGGAG TAGGATGTCT CAAGCATTTG 18842 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGTATACAAT TTAGCATCTT CTAAAACTAT ATTTTGGGAG TAGGATGTCT CAAGCATTTG 1401 TGGTTTTGTG TATGTTAACC ATGTTTGTTT ACAGACCCTT TCCCTGTTTC TACCTTGTGG 18902 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGTTTTGTG TATGTTAACC ATGTTTGTTT ACAGACCCTT TCCCTGTTTC TACCTTGTGG 1461 ATTATGTATG AATTTTAGCT GAACTAAAAA GTTTGAAATT CGTTTGGATT AGCTT 18957 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||| ATTATGTATG AATTTTAGCT GAACTAAAAA GTTTGAAATT CGTTTGGATT AGCTT 1516 hqPGS_C06HBa0046G10.1-4+_SGN-U319242+ (12783 12841,12934 13003,13141 13180,15924 16088,16222 16298,16517 16633,17685 17950,18063 18158,18252 18327,18408 18957) ******************************************************************************** EST sequence 6 -strand 834 n (File: SGN-U340995-) 1 CAAATGCGGA AGTTTTCCCC GCAAAGGTGG GCCCTCAAAA GCGTGAACCG TATATTAAAC 61 CCTTGCGGGC TAAATGTGAA GGGCCCCAAA TCAAGCAGGG AAATTCTCCT CACCATGCCA 121 CAAGTCAACA AAAACAGTAA AGCTCCCACA AGTCAAACCC AACCCCCCAA AGGGTGCAAG 181 TCCGGTCCAT GGTTCGAAAA ATTAAATTTA GTTCCTCAAG GGTAAAAAGA GTGGGACCAG 241 AAAGAAAAAG CAACCTACTC AGCAAAACCC CTTATGGCAG CCCCCAGGAA AAACTGTCTA 301 GTGCATCAAA GGACCGACAA AGTAAGCCCA AGAGTGAAAA AAGGCGTCCG AGGGGAAAAA 361 ACTAATTATT TGTGGCACAT TGTAATAGTG GAGCTCCTCC TACTTACATT CTGGGACCCA 421 TTTCGGCTCA TTGAAGAATG CTACGGGTGC CTCTATTTCC TTGTGTGCTA TTGCTGTTGG 481 GCAAAATCTT AAGGTGCAGC TTGCAAATGC CTGTCTAGAC CTTTTGGTTA TGGTGGTGCG 541 TGCTAGGTTT CTGGATAGTT TTTTTTTTCA GTTTAAAGCA TATTGTTAGA GATGTAATTG 601 GTTAGATTTA TCATTTTGGT TGCTAGCTGT ATTCACTTTT GTTACTTTTA GCCCTCTTAG 661 CGTAGGCAGT AGATACTCTG TTGATGAGTA TTTTATGGAT GCGTTGGATC ATCAATTACC 721 ATCTTTTCTC TTGAAAAAAA TCAAAAGTAC TTCTAGAGCG GCCGCGGGCC CATCGATTTT 781 CCACCCGGGT GGGGTACCAG GTAAGAATCC CAAGTGAGCT TCTATGCGCA CCCA Predicted gene structure (within gDNA segment 24799 to 18294): Exon 1 21126 21059 ( 68 n); cDNA 1 67 ( 67 n); score: 0.507 Intron 1 21058 20784 ( 275 n); Pd: 0.996 (s: 0.56), Pa: 0.000 (s: 0.64) Exon 2 20783 20093 ( 691 n); cDNA 68 733 ( 666 n); score: 0.878 MATCH C06HBa0046G10.1-4- SGN-U340995- 0.845 759 0.910 C PGS_C06HBa0046G10.1-4-_SGN-U340995- (21126 21059,20783 20093) Alignment (genomic DNA sequence = upper lines): CATAAGAAGA A-AAAACCTA GGAATGCTGA ACCATCACTA AAGCATGAAA TGGATGCTTC 21068 || | | || | || | || | || || ||| | |||| |||| | || | CAAATGCGGA AGTTTTCCCC GCAAAGGTGG GCCCTCA--A AAGCGTGAAC CGTATATTAA 58 ACCTAAAAGG TTGGTATAAT CTCCTTAACC ATGTGTTTGT GTGACATATT AACATCTGAC 21008 ||| | ACCCTTGCG. .......... .......... .......... .......... .......... 67 GTTTTGAAAG CCTAATGGTA CCAATGGTGG GGTTCTTTTT GCAGCAAGTC AAAAGAGGCG 20948 .......... .......... .......... .......... .......... .......... 67 ACAGCTAAAT CTGGACAGAA ATCCAAGGGT AAACTCAACT TGAAAGATGG CACCTCAAAA 20888 .......... .......... .......... .......... .......... .......... 67 TCTGCCGGGA AAGCTGATGA CACAACCAGC AGCAAGTCTG CGGCTCCATC CAAAAGGAGC 20828 .......... .......... .......... .......... .......... .......... 67 ACTGGCAAAT CAGTTGATAC TGAAAAGCCA TCTGCCAGGT CTAAAGATGT TAGTAGTAGT 20768 | | || | || .......... .......... .......... .......... ....GGCTAA ATGT-GAAGG 82 ACTCCCAAAT CCAAGTCCAG GCAAGATACT CCATCAACAA CTGCCAACAA GTCCAAGCAA 20708 | ||||||| |||| ||| | || || || || || || | |||| |||| || ||| ||| GC-CCCAAAT -CAAG--CAG GGAA-ATTCT CC-TC-ACCA -TGCC-ACAA GT-CAA-CAA 131 GAAACAGTTA AAGCTGCCAA CAAGTCCAAA ACCAAAACCC CCCAAAGTGG TGGCAAGTCC 20648 |||||| || ||||| || | ||||| | || ||| ||||| ||||||| || | |||||||| -AAACAG-TA AAGCT-CCCA CAAGT-C-AA ACC-CAACCC CCCAAAG-GG T-GCAAGTCC 183 GGTGCCAATG GTTCGGAGAA GCTAAAATCT AGTTCATCAA AGGTTAAAGA GAGTGGGAAC 20588 ||| || ||| |||| || || | |||| | ||||| || | ||| |||| | ||||||| || GGT-CC-ATG GTTC-GA-AA AATTAAATTT AGTTCCTC-A AGGGTAAAAA GAGTGGG-AC 237 CAGAAGGAAA AAGCAACTAA CTCAGCAAAA ACCCCTGATG GCAGCACCAA GGAGAAACTG 20528 ||||| |||| ||||||| | |||||| ||| |||||| ||| ||||| || | ||| |||||| CAGAAAGAAA AAGCAACCTA CTCAGC-AAA ACCCCTTATG GCAGCCCCCA GGAAAAACTG 296 TCTAGTGCAT CAAAGGAACG ACAGAGTGAG CCCAAGAGTG GAAAGAAGCG TGCGAGGGGG 20468 |||||||||| ||||||| || ||| ||| || |||||||||| ||| | ||| | ||||||| TCTAGTGCAT CAAAGGACCG ACAAAGTAAG CCCAAGAGTG AAAAAAGGCG TCCGAGGGGA 356 AAAAACTGAT TATTTGTTGC ACATTGTAAT AGTGGAGCTC CTCCTACTTA CATTCTTGGA 20408 ||||||| || ||||||| || |||||||||| |||||||||| |||||||||| |||||| ||| AAAAACTAAT TATTTGTGGC ACATTGTAAT AGTGGAGCTC CTCCTACTTA CATTCTGGGA 416 CCCATTGCGG CTCATTGAAG -ATGCTAC-G GTGCCTACTA -TTCCTTGTG TGCTATTGCT 20351 |||||| ||| |||||||||| ||||||| | |||||| ||| ||||||||| |||||||||| CCCATTTCGG CTCATTGAAG AATGCTACGG GTGCCT-CTA TTTCCTTGTG TGCTATTGCT 475 GTTTGGCAAA ATCTTGAGGT GCAGCTTGCA AATGCCTGTC TTAGCCTTTT GGTTATGGTG 20291 ||| |||||| ||||| |||| |||||||||| |||||||||| | |||||| |||||||||| GTTGGGCAAA ATCTTAAGGT GCAGCTTGCA AATGCCTGTC TAGACCTTTT GGTTATGGTG 535 GTGCGTGCTA GGTTTCTGGA TAGTTTTTTT TTTCAGTTTA AAGCATATTG TTAGAGATGT 20231 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGCGTGCTA GGTTTCTGGA TAGTTTTTTT TTTCAGTTTA AAGCATATTG TTAGAGATGT 595 AATTGGTTAG ATTTATCATT TTGGTTGCTA GCTGTATTCA CTTTTGTTAC TTTTAGCCCT 20171 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATTGGTTAG ATTTATCATT TTGGTTGCTA GCTGTATTCA CTTTTGTTAC TTTTAGCCCT 655 CTTAGCGTAG GAAGGAGATA CTCTGTTGAT GAGTATTTTA TGGATGCGTT GGATCATAAA 20111 |||||||||| | || ||||| |||||||||| |||||||||| |||||||||| ||||||| || CTTAGCGTAG GCAGTAGATA CTCTGTTGAT GAGTATTTTA TGGATGCGTT GGATCATCAA 715 TTACCATCTC TTCTCTTG 20093 ||||||||| |||||||| TTACCATCTT TTCTCTTG 733 hqPGS_C06HBa0046G10.1-4-_SGN-U340995- (21126 21059,20783 20093) ******************************************************************************** EST sequence 8 +strand 1988 n (File: SGN-U323143+) 1 AGGCGAAGCA GTCCAGACGG CTGAGAGCGG GAGGGATGAG GCATGTTTGG AAGATATTGA 61 GCCTGCTGTG AATGGATCTC CCAAATCAAT CACAAGCAAT GGTGGTAGTT TGGAGAATGT 121 GAGATTGACT TCTGAAACAG AATCGCTGAT GAAAGCTGGA GCTCATGATG AGGTGGATCT 181 CCATGATGCT TCAAAGATAC CATCTGAATC TGATGATTCA AGGGTTGAAA AGTCTACAAA 241 GTCGGAGCCC AAGTCTATGA AGTCAGAGCC CAAGTCGGAG CAACCTTCTA AGAAGAGAGG 301 AAGGAAGACA GTCTCTTCAA TAAACTCAGC CGAATCTTCT CACCAAGCTC CTGAAGGAAG 361 TGGAAAAGAA ATTGAGAAGC TTCAAGATCA TCAGAATGAT CAAAACAAAG ATGACCATAG 421 TTCAGCTTCT GAAGATCCAG TGGTTGAGCA GTCCAATCTG TTGGAGAAGG AACCAGAAAC 481 TAATCAGCAC TCTGCACCCA AAGAATCTGA GGAGGAAGTT GTGGATGTTG CTCCTCCATC 541 CCAAGGTCAG AGCCTTCCTG AAGAGATTGC ACTGAAGAAG GGTGATCTCC CAATGGAGGA 601 CAACTCAAAT CAAGACGGTG AGTCTAAGAA GGAAATTGAA GCTGGAAGTG ACTTGGAAGT 661 TAAGCAGGTG AGGCGCCCTT TGAGGAAGAC TCCTTTAGAA CCTTGTCGTA AGGAGAAAGG 721 TGGATCCACC AGTGATACCG AGGCTAAAAA GCTGAAGCAA TCGGGTAAGA ATGTTGACAC 781 CAAAAATAAG AGTCAGGTTG GTCCATCTGC GAGAAATAAG GAAGATAGCA AAAAACGTGG 841 ACATGGAAAA GCTAGTCAGG AGACGTTGCC TTCACAAGAG TCTCCTGATC GCTCTGTTAA 901 ACATGATGAA GATAACGAAG AGGAAATTCC CAGGACCACT ACAAAGAGAA AGCGTTCTTC 961 AAGCAAGGGC AGGGGGAGTA GGCAAGTTGT GCAGAAGAGT GTGCCTACGC CCGAGTCTCC 1021 CGACAATTCA ACTAAACATA TAAGCGACGA AGATGAGACT GACACAAGTG CAAAGAAAAA 1081 GCCTTCTTCA GGCAACGACA GGGTAACAGA GACTGTGCAA TGTGATAAGA ATCTGGTTGG 1141 TAGAAAGATC AGAGTTTGGT GGCCATTAGA TGAACTATTT TATGAAGGGA CGGTTAGCAA 1201 TTATGATTCT TCCAGGAAGA AGTTCACAGT TGACTATACT GATGGAGAGA CAGAAAAATT 1261 GAATCTCTTG AAGGAACGCT GGGAACTTGT TGAAGATGAT AATATGTCAG AAGAGGAGCA 1321 AGTAGCCAGC GCTGATGCAG CAGCTTCGGA AAGTCATAAG AAGAAAAAAC CTAGGAATGC 1381 TGAACCATCA CTAAAGCATG AAATGGATGC TTCACCTAAA AGCAAGTCAA AAGAGGCGAC 1441 AGCTAAATCT GGACAGAAAT CCAAGGGTAA ACTCAACTTG AAAGATGGCA CCTCAAAATC 1501 TGCCGGGAAA GCTGATGACA CAACCAGCAG CAAGTCTGCG GCTCCATCCA AAAGGAGCAC 1561 TGGCAAATCA GTTGATACTG AAAAGCCATC TGCCAGGTCT AAAGATGTTA GTAGTAGTAC 1621 TCCCAAATCC AAGTCCAGGC AAGATACTCC ATCAACAACT GCCAACAAGT CCAAGCAAGA 1681 AACAGTTAAA GCTGCCAACA AGTCCAAAAC CAAAACCCCC CAAAGTGGTG GCAAGTCCGG 1741 TGCCAATGGT TCGGAGAAGC TAAAATCTAG TTCATCAAAG GTTAAAGAGA GTGGGAACCA 1801 GAAGGAAAAA GCAACTAACT CAGCAAAAAC CCCTGATGGC AGCACCAAGG AGAAACTGTC 1861 TAGTGCATCA AAAGAACGAC AGAGTGAGCC CCAAGACTGG AAAGAAGCGT GCGAGGGGGG 1921 AAAAACTGAT TATTTGTTGC ACATTGTAAT AGTGGAGCTC CTCCTACTTA CATTCTTGGA 1981 CCCATTGC Predicted gene structure (within gDNA segment 24944 to 19790): Exon 1 24653 24638 ( 16 n); cDNA 1 16 ( 16 n); score: 1.000 Intron 1 24637 24212 ( 426 n); Pd: 1.000 (s: 0), Pa: 0.991 (s: 1.00) Exon 2 24211 23369 ( 843 n); cDNA 17 859 ( 843 n); score: 1.000 Intron 2 23368 23240 ( 129 n); Pd: 1.000 (s: 1.00), Pa: 0.960 (s: 1.00) Exon 3 23239 23126 ( 114 n); cDNA 860 973 ( 114 n); score: 1.000 Intron 3 23125 22954 ( 172 n); Pd: 0.998 (s: 1.00), Pa: 0.991 (s: 1.00) Exon 4 22953 22825 ( 129 n); cDNA 974 1102 ( 129 n); score: 1.000 Intron 4 22824 22365 ( 460 n); Pd: 1.000 (s: 1.00), Pa: 0.678 (s: 1.00) Exon 5 22364 22291 ( 74 n); cDNA 1103 1176 ( 74 n); score: 1.000 Intron 5 22290 22132 ( 159 n); Pd: 0.984 (s: 1.00), Pa: 0.997 (s: 1.00) Exon 6 22131 22080 ( 52 n); cDNA 1177 1228 ( 52 n); score: 1.000 Intron 6 22079 21993 ( 87 n); Pd: 0.583 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 7 21992 21906 ( 87 n); cDNA 1229 1315 ( 87 n); score: 1.000 Intron 7 21905 21834 ( 72 n); Pd: 1.000 (s: 1.00), Pa: 0.996 (s: 0) Exon 8 21833 21796 ( 38 n); cDNA 1316 1353 ( 38 n); score: 1.000 Intron 8 21795 21128 ( 668 n); Pd: 0.964 (s: 0), Pa: 0.999 (s: 1.00) Exon 9 21127 21059 ( 69 n); cDNA 1354 1422 ( 69 n); score: 1.000 Intron 9 21058 20964 ( 95 n); Pd: 0.996 (s: 1.00), Pa: 0.972 (s: 1.00) Exon 10 20963 20400 ( 564 n); cDNA 1423 1988 ( 566 n); score: 0.988 MATCH C06HBa0046G10.1-4- SGN-U323143+ 0.996 1986 0.999 C PGS_C06HBa0046G10.1-4-_SGN-U323143+ (24653 24638,24211 23369,23239 23126,22953 22825,22364 22291,22131 22080,21992 21906,21833 21796,21127 21059,20963 20400) Alignment (genomic DNA sequence = upper lines): AGGCGAAGCA GTCCAGGCAT GTAGTTTGTA TATTTTCTAG TTGTTGTTGG ACATAAAACT 24594 |||||||||| |||||| AGGCGAAGCA GTCCAG.... .......... .......... .......... .......... 16 TGCAAAGTAA TGAAATATTA TTTGCATGTC AATGTTTGTG TTACAAATTT GTTCACCATC 24534 .......... .......... .......... .......... .......... .......... 16 TGAACTCCAC CTGTAATGGG TTCTCTTAGA GAACTTCAGT TTTTCCTCGA GTGAAATTTC 24474 .......... .......... .......... .......... .......... .......... 16 AAAATTGCAA CTATTTGTTC AAATTCAACA TCAAATACTC CTATTTCATC TTTAACCAAA 24414 .......... .......... .......... .......... .......... .......... 16 TATTGTCTGA ATGGGCCAGT TTCTCGTGTT GGTAAATCAA TGAAAAACAC CCTTAGGAAC 24354 .......... .......... .......... .......... .......... .......... 16 GAGCAATATC TTTGATATCT GTACTGGATG GTGTAGAGTT GAATTGAACA TGTTAGTGCA 24294 .......... .......... .......... .......... .......... .......... 16 ATGGTATGCT TATGGCGTGC AATCTCTGTT GTCTGACTGT CAGTTAAAGG TATTTAGTCA 24234 .......... .......... .......... .......... .......... .......... 16 GAAACTTTTC TTGTTTGTTC AGACGGCTGA GAGCGGGAGG GATGAGGCAT GTTTGGAAGA 24174 |||||||| |||||||||| |||||||||| |||||||||| .......... .......... ..ACGGCTGA GAGCGGGAGG GATGAGGCAT GTTTGGAAGA 54 TATTGAGCCT GCTGTGAATG GATCTCCCAA ATCAATCACA AGCAATGGTG GTAGTTTGGA 24114 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATTGAGCCT GCTGTGAATG GATCTCCCAA ATCAATCACA AGCAATGGTG GTAGTTTGGA 114 GAATGTGAGA TTGACTTCTG AAACAGAATC GCTGATGAAA GCTGGAGCTC ATGATGAGGT 24054 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAATGTGAGA TTGACTTCTG AAACAGAATC GCTGATGAAA GCTGGAGCTC ATGATGAGGT 174 GGATCTCCAT GATGCTTCAA AGATACCATC TGAATCTGAT GATTCAAGGG TTGAAAAGTC 23994 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGATCTCCAT GATGCTTCAA AGATACCATC TGAATCTGAT GATTCAAGGG TTGAAAAGTC 234 TACAAAGTCG GAGCCCAAGT CTATGAAGTC AGAGCCCAAG TCGGAGCAAC CTTCTAAGAA 23934 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TACAAAGTCG GAGCCCAAGT CTATGAAGTC AGAGCCCAAG TCGGAGCAAC CTTCTAAGAA 294 GAGAGGAAGG AAGACAGTCT CTTCAATAAA CTCAGCCGAA TCTTCTCACC AAGCTCCTGA 23874 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGAGGAAGG AAGACAGTCT CTTCAATAAA CTCAGCCGAA TCTTCTCACC AAGCTCCTGA 354 AGGAAGTGGA AAAGAAATTG AGAAGCTTCA AGATCATCAG AATGATCAAA ACAAAGATGA 23814 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGAAGTGGA AAAGAAATTG AGAAGCTTCA AGATCATCAG AATGATCAAA ACAAAGATGA 414 CCATAGTTCA GCTTCTGAAG ATCCAGTGGT TGAGCAGTCC AATCTGTTGG AGAAGGAACC 23754 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCATAGTTCA GCTTCTGAAG ATCCAGTGGT TGAGCAGTCC AATCTGTTGG AGAAGGAACC 474 AGAAACTAAT CAGCACTCTG CACCCAAAGA ATCTGAGGAG GAAGTTGTGG ATGTTGCTCC 23694 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAAACTAAT CAGCACTCTG CACCCAAAGA ATCTGAGGAG GAAGTTGTGG ATGTTGCTCC 534 TCCATCCCAA GGTCAGAGCC TTCCTGAAGA GATTGCACTG AAGAAGGGTG ATCTCCCAAT 23634 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCCATCCCAA GGTCAGAGCC TTCCTGAAGA GATTGCACTG AAGAAGGGTG ATCTCCCAAT 594 GGAGGACAAC TCAAATCAAG ACGGTGAGTC TAAGAAGGAA ATTGAAGCTG GAAGTGACTT 23574 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGAGGACAAC TCAAATCAAG ACGGTGAGTC TAAGAAGGAA ATTGAAGCTG GAAGTGACTT 654 GGAAGTTAAG CAGGTGAGGC GCCCTTTGAG GAAGACTCCT TTAGAACCTT GTCGTAAGGA 23514 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGAAGTTAAG CAGGTGAGGC GCCCTTTGAG GAAGACTCCT TTAGAACCTT GTCGTAAGGA 714 GAAAGGTGGA TCCACCAGTG ATACCGAGGC TAAAAAGCTG AAGCAATCGG GTAAGAATGT 23454 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAAGGTGGA TCCACCAGTG ATACCGAGGC TAAAAAGCTG AAGCAATCGG GTAAGAATGT 774 TGACACCAAA AATAAGAGTC AGGTTGGTCC ATCTGCGAGA AATAAGGAAG ATAGCAAAAA 23394 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGACACCAAA AATAAGAGTC AGGTTGGTCC ATCTGCGAGA AATAAGGAAG ATAGCAAAAA 834 ACGTGGACAT GGAAAAGCTA GTCAGGTAAA AACTTACTAA ATCTTTAAGT TAATGTGATG 23334 |||||||||| |||||||||| ||||| ACGTGGACAT GGAAAAGCTA GTCAG..... .......... .......... .......... 859 TTCAATAATT ATCTCGTCTC TGTAAATTCA TCTCCCTATT GGACTACCAA TGTGTCCCTG 23274 .......... .......... .......... .......... .......... .......... 859 TACGTCTTAT CAGTAGTTAA TTTCACTGGT GCAGGAGACG TTGCCTTCAC AAGAGTCTCC 23214 |||||| |||||||||| |||||||||| .......... .......... .......... ....GAGACG TTGCCTTCAC AAGAGTCTCC 885 TGATCGCTCT GTTAAACATG ATGAAGATAA CGAAGAGGAA ATTCCCAGGA CCACTACAAA 23154 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGATCGCTCT GTTAAACATG ATGAAGATAA CGAAGAGGAA ATTCCCAGGA CCACTACAAA 945 GAGAAAGCGT TCTTCAAGCA AGGGCAGGGT AAGCATTTTA CATCATTGAT TTCATGTATA 23094 |||||||||| |||||||||| |||||||| GAGAAAGCGT TCTTCAAGCA AGGGCAGG.. .......... .......... .......... 973 ATGCACATTT TATTCGAGGT AGTATTTTGA TGTGCTATTT TTTCCTGTTT CTGTAATTCT 23034 .......... .......... .......... .......... .......... .......... 973 TATGACTGAG CTTGTTCAAT TTTACTTACT TACCATGACC CCTCCGTGTC TGTCTCATCA 22974 .......... .......... .......... .......... .......... .......... 973 GTTGTTATTT CGTTGTGCAG GGGAGTAGGC AAGTTGTGCA GAAGAGTGTG CCTACGCCCG 22914 |||||||||| |||||||||| |||||||||| |||||||||| .......... .......... GGGAGTAGGC AAGTTGTGCA GAAGAGTGTG CCTACGCCCG 1013 AGTCTCCCGA CAATTCAACT AAACATATAA GCGACGAAGA TGAGACTGAC ACAAGTGCAA 22854 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTCTCCCGA CAATTCAACT AAACATATAA GCGACGAAGA TGAGACTGAC ACAAGTGCAA 1073 AGAAAAAGCC TTCTTCAGGC AACGACAGGG TAAGCATTTC AAATTACTGT TCATTTTTGA 22794 |||||||||| |||||||||| ||||||||| AGAAAAAGCC TTCTTCAGGC AACGACAGG. .......... .......... .......... 1102 TAAAAATACT GTTCATGTTT TCCCATTTTA TCCTGGGCTT GTTTTGATAC TAATCCTTTA 22734 .......... .......... .......... .......... .......... .......... 1102 CTTTTCTGTG CTATGATGCT TATATTTTGA ACTTGAAAAT TGATTTTAGT TGATCATTTT 22674 .......... .......... .......... .......... .......... .......... 1102 CTTCCAATTG ATGATATTAT TATAAAAGCC AATAGTGGTT ATATAGAAAG TTTGTAGCAA 22614 .......... .......... .......... .......... .......... .......... 1102 ATTACCATTT GTTGTGACAT GTTTAGTGCT AGTATACTTC TGTTATTGTT TTTACGTGTT 22554 .......... .......... .......... .......... .......... .......... 1102 TACAGGGCAT TACTGCCTAA TTTCTCCTTC TGTCCTCTTC TTGTTATTGA CATTCTTAGT 22494 .......... .......... .......... .......... .......... .......... 1102 CACTTATTTT TGATTGTTCG TGTATATTTA ATGCACTAAG AAAGCTGTCT TGATGGACTG 22434 .......... .......... .......... .......... .......... .......... 1102 CTTAGGCCCT ACAGTACTCC CGTGTGATTA ATCAGCGGTT TGCGCCGCTA TACTGCTATT 22374 .......... .......... .......... .......... .......... .......... 1102 ACTTGACAGG TAACAGAGAC TGTGCAATGT GATAAGAATC TGGTTGGTAG AAAGATCAGA 22314 | |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .........G TAACAGAGAC TGTGCAATGT GATAAGAATC TGGTTGGTAG AAAGATCAGA 1153 GTTTGGTGGC CATTAGATGA ACTGTAAGTG CTCGTCTTCT TTTATGCTGT GGAACAATTT 22254 |||||||||| |||||||||| ||| GTTTGGTGGC CATTAGATGA ACT....... .......... .......... .......... 1176 TTTTCCTTCC TCATTCTTGA CATGATAGTT TGGAATTACT GTGTTTTTGA GTTTACTGTA 22194 .......... .......... .......... .......... .......... .......... 1176 TCTGAGAACG TTTCCAGTTC TGTATTAGTT GGGATAATTT TTTATCTGAT TTGTTGTCAC 22134 .......... .......... .......... .......... .......... .......... 1176 AGATTTTATG AAGGGACGGT TAGCAATTAT GATTCTTCCA GGAAGAAGTT CACAGTGAGT 22074 |||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||| ..ATTTTATG AAGGGACGGT TAGCAATTAT GATTCTTCCA GGAAGAAGTT CACA...... 1228 GCAGTTTGTT TTCTGTTTCA AGAAATGGAA TTGTTCCCTT GATGTAACAC TCATATGTTT 22014 .......... .......... .......... .......... .......... .......... 1228 GATTAAATTT TTTCTTATTA GGTTGACTAT ACTGATGGAG AGACAGAAAA ATTGAATCTC 21954 ||||||||| |||||||||| |||||||||| |||||||||| .......... .......... .GTTGACTAT ACTGATGGAG AGACAGAAAA ATTGAATCTC 1267 TTGAAGGAAC GCTGGGAACT TGTTGAAGAT GATAATATGT CAGAAGAGGT TAGTTACTGA 21894 |||||||||| |||||||||| |||||||||| |||||||||| |||||||| TTGAAGGAAC GCTGGGAACT TGTTGAAGAT GATAATATGT CAGAAGAG.. .......... 1315 CTATATTTTG ATTTATTATG GTTATGTTTC TTTGATACAT TAGGATGCAT TTGTTGACAG 21834 .......... .......... .......... .......... .......... .......... 1315 GAGCAAGTAG CCAGCGCTGA TGCAGCAGCT TCGGAAAGGT AAACCTGGCC ATTAGTCACC 21774 |||||||||| |||||||||| |||||||||| |||||||| GAGCAAGTAG CCAGCGCTGA TGCAGCAGCT TCGGAAAG.. .......... .......... 1353 ATTTTCTTTA TTTGGTTTTG ACTCATTTAT TTTCACCTGA AGATGCTTAC TCGATTTGAG 21714 .......... .......... .......... .......... .......... .......... 1353 CCAAGTGATC TGAATTGTCT CCCTTTGTGA AACCCTTTTG CATTTTTTCA TCTACAAGTG 21654 .......... .......... .......... .......... .......... .......... 1353 TCTGTTTAGC ATTATAACCA CTTGCTAGTA TGTCTCAACT GAAGAAACAA CACAAGATTC 21594 .......... .......... .......... .......... .......... .......... 1353 TTGTTGCTGT GTTGTGCTAT TTTTGTGTAC CTTTGATGTT TTCTGGGTTT GATATCTTTG 21534 .......... .......... .......... .......... .......... .......... 1353 TCCAGTCTAT AGTTTCATTT TTTTTGTGAT GCATGCGATG CTATCATAAG CAAAAAAAGC 21474 .......... .......... .......... .......... .......... .......... 1353 AATTTGTCGA TTTCCTTTTT CTGTTTCCAA ATATTCTGCT AACTGTAGGA GAAGTGGTAA 21414 .......... .......... .......... .......... .......... .......... 1353 GTACGTTGAT ATGAGTGATA GTGATTTCCT TTATTACATG GAAATTCTTC TTCGATGAGC 21354 .......... .......... .......... .......... .......... .......... 1353 AAAGTGAAAC CAATACTCAA TTTGATGTTT GTACTCAATT GTGTTATTAG ATTATAATAT 21294 .......... .......... .......... .......... .......... .......... 1353 TTTTGTAGCT GCGATTTACT CTCTTTTCTT AATCTCTCTG TGTAGAAGTA CTTTTAACAT 21234 .......... .......... .......... .......... .......... .......... 1353 TCATTCTATT CATTGTGTTA GGTAAAGAAA GGACAGAAAT CTTCCAAGTG TAGTTAGCAG 21174 .......... .......... .......... .......... .......... .......... 1353 TATGACTATT CTTTGTTTAA CTTTGACTCT GTTTTTGATA TGTCAGTCAT AAGAAGAAAA 21114 |||| |||||||||| .......... .......... .......... .......... ......TCAT AAGAAGAAAA 1367 AACCTAGGAA TGCTGAACCA TCACTAAAGC ATGAAATGGA TGCTTCACCT AAAAGGTTGG 21054 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||| AACCTAGGAA TGCTGAACCA TCACTAAAGC ATGAAATGGA TGCTTCACCT AAAAG..... 1422 TATAATCTCC TTAACCATGT GTTTGTGTGA CATATTAACA TCTGACGTTT TGAAAGCCTA 20994 .......... .......... .......... .......... .......... .......... 1422 ATGGTACCAA TGGTGGGGTT CTTTTTGCAG CAAGTCAAAA GAGGCGACAG CTAAATCTGG 20934 |||||||||| |||||||||| |||||||||| .......... .......... .......... CAAGTCAAAA GAGGCGACAG CTAAATCTGG 1452 ACAGAAATCC AAGGGTAAAC TCAACTTGAA AGATGGCACC TCAAAATCTG CCGGGAAAGC 20874 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACAGAAATCC AAGGGTAAAC TCAACTTGAA AGATGGCACC TCAAAATCTG CCGGGAAAGC 1512 TGATGACACA ACCAGCAGCA AGTCTGCGGC TCCATCCAAA AGGAGCACTG GCAAATCAGT 20814 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGATGACACA ACCAGCAGCA AGTCTGCGGC TCCATCCAAA AGGAGCACTG GCAAATCAGT 1572 TGATACTGAA AAGCCATCTG CCAGGTCTAA AGATGTTAGT AGTAGTACTC CCAAATCCAA 20754 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGATACTGAA AAGCCATCTG CCAGGTCTAA AGATGTTAGT AGTAGTACTC CCAAATCCAA 1632 GTCCAGGCAA GATACTCCAT CAACAACTGC CAACAAGTCC AAGCAAGAAA CAGTTAAAGC 20694 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTCCAGGCAA GATACTCCAT CAACAACTGC CAACAAGTCC AAGCAAGAAA CAGTTAAAGC 1692 TGCCAACAAG TCCAAAACCA AAACCCCCCA AAGTGGTGGC AAGTCCGGTG CCAATGGTTC 20634 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCCAACAAG TCCAAAACCA AAACCCCCCA AAGTGGTGGC AAGTCCGGTG CCAATGGTTC 1752 GGAGAAGCTA AAATCTAGTT CATCAAAGGT TAAAGAGAGT GGGAACCAGA AGGAAAAAGC 20574 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGAGAAGCTA AAATCTAGTT CATCAAAGGT TAAAGAGAGT GGGAACCAGA AGGAAAAAGC 1812 AACTAACTCA GCAAAAACCC CTGATGGCAG CACCAAGGAG AAACTGTCTA GTGCATCAAA 20514 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACTAACTCA GCAAAAACCC CTGATGGCAG CACCAAGGAG AAACTGTCTA GTGCATCAAA 1872 GGAACGACAG AGTGAG-CCC AAGAGTGGAA AGAAGCGTGC GA-GGGGGAA AAACTGATTA 20456 ||||||||| |||||| ||| |||| ||||| |||||||||| || ||||||| |||||||||| AGAACGACAG AGTGAGCCCC AAGACTGGAA AGAAGCGTGC GAGGGGGGAA AAACTGATTA 1932 TTTGTTGCAC ATTGTAATAG TGGAGCTCCT CCTACTTACA TTCTTGGACC CATTGC 20400 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||| TTTGTTGCAC ATTGTAATAG TGGAGCTCCT CCTACTTACA TTCTTGGACC CATTGC 1988 hqPGS_C06HBa0046G10.1-4-_SGN-U323143+ (24211 23369,23239 23126,22953 22825,22364 22291,22131 22080,21992 21906,21833 21796,21127 21059,20963 20400) Total number of EST alignments reported: 10 ________________________________________________________________________________ Predicted gene locations (3) in segment 1 to 25558: PGL 1 (+ strand): 3133 12269 AGS-1 (3133 3477,4651 4732,6727 6805,6883 6980,7066 7122,7697 7784,9492 9598,11630 11737,11917 12269) SCR (e 0.994 d 0.998 a 0.999,e 1.000 d 0.815 a 0.328,e 1.000 d 0.900 a 0.975,e 1.000 d 0.979 a 0.985,e 1.000 d 0.985 a 0.648,e 1.000 d 0.915 a 0.976,e 1.000 d 0.997 a 0.997,e 0.981 d 0.999 a 0.912,e 0.994) Exon 1 3133 3477 ( 345 n); score: 0.994 Intron 1 3478 4650 (1173 n); Pd: 0.998 Pa: 0.999 Exon 2 4651 4732 ( 82 n); score: 1.000 Intron 2 4733 6726 (1994 n); Pd: 0.815 Pa: 0.328 Exon 3 6727 6805 ( 79 n); score: 1.000 Intron 3 6806 6882 ( 77 n); Pd: 0.900 Pa: 0.975 Exon 4 6883 6980 ( 98 n); score: 1.000 Intron 4 6981 7065 ( 85 n); Pd: 0.979 Pa: 0.985 Exon 5 7066 7122 ( 57 n); score: 1.000 Intron 5 7123 7696 ( 574 n); Pd: 0.985 Pa: 0.648 Exon 6 7697 7784 ( 88 n); score: 1.000 Intron 6 7785 9491 (1707 n); Pd: 0.915 Pa: 0.976 Exon 7 9492 9598 ( 107 n); score: 1.000 Intron 7 9599 11629 (2031 n); Pd: 0.997 Pa: 0.997 Exon 8 11630 11737 ( 108 n); score: 0.981 Intron 8 11738 11916 ( 179 n); Pd: 0.999 Pa: 0.912 Exon 9 11917 12269 ( 353 n); score: 0.994 PGS (3133 3477,4651 4732,6727 6805,6883 6980,7066 7122,7697 7784,9492 9598,11630 11737,11917 12269) SGN-U323272+ 3-phase translation of AGS-1 (+strand): . . . . . . 3133 AAAAAATATAAAACAAAACACCTTCCATAAACAAAGTGACGACGACGTCGTATTAAGTCC K K Y K T K H L P - T K - R R R R I K S K N I K Q N T F H K Q S D D D V V L S P K I - N K T P S I N K V T T T S Y - V . . . . . . 3193 CTCCAGAAACCCCAAATCAAAATTCTCGGTCCTATAAACCCCAGGTGTTTTCTTCTTCTT L Q K P Q I K I L G P I N P R C F L L L S R N P K S K F S V L - T P G V F F F F P P E T P N Q N S R S Y K P Q V F S S S . . . . . . 3253 CTTCCCAATTCTCAAAATCTTACCATTTCTCGCCATGGATGAAGAAGAGATTGAGAAAGC L P N S Q N L T I S R H G - R R D - E S F P I L K I L P F L A M D E E E I E K A S S Q F S K S Y H F S P W M K K R L R K . . . . . . 3313 AGTCGTAGCGTATTTGAAGAAGAAGGGTTTCAAGCAAACGGAGATTGCTTTTCAAGAAGA S R S V F E E E G F Q A N G D C F S R R V V A Y L K K K G F K Q T E I A F Q E E Q S - R I - R R R V S S K R R L L F K K . . . . . . 3373 ACAGCAAGTGAATAAAAACAGTTCTTCTTCAATCCATAATAACAACAACTCAGCAAATTC T A S E - K Q F F F N P - - Q Q L S K F Q Q V N K N S S S S I H N N N N S A N S N S K - I K T V L L Q S I I T T T Q Q I . . . . . : . 3433 TCAGATTGACCCCGACTTAACCAAAAAAATCCTTTCTTTCTCTGA : ATTTGAAACCAGTCC S D - P R L N Q K N P F F L - : I - N Q S Q I D P D L T K K I L S F S E : F E T S P L R L T P T - P K K S F L S L : N L K P V . . . . . . 4666 CCAACGATACCAAGAAGAATATAGCAAACTTCGGTCATGGGCCTATAGTTCACTGGATCT P T I P R R I - Q T S V M G L - F T G S Q R Y Q E E Y S K L R S W A Y S S L D L P N D T K K N I A N F G H G P I V H W I . : . . . . . 4726 GTATAAG : CATGAGTTGCTTCGTGTTTTATATCCTGTATTTATTCATTGTTTCATGGAACT V - : A - V A S C F I S C I Y S L F H G T Y K : H E L L R V L Y P V F I H C F M E L C I S : M S C F V F Y I L Y L F I V S W N . . . : . . . 6780 TGTCGCTAGAGGTTATATTCAAGAAG : CACGAGCCTTTTTCAATAGTTACCGTGAAGACCA C R - R L Y S R S : T S L F Q - L P - R P V A R G Y I Q E : A R A F F N S Y R E D H L S L E V I F K K : H E P F S I V T V K T . . . . . . 6917 TGAGATGACGCATCTGCGTGATCTTCAGAAGTTAGAAGGCGTCCTCTCACCTTCCCATCT - D D A S A - S S E V R R R P L T F P S E M T H L R D L Q K L E G V L S P S H L M R - R I C V I F R S - K A S S H L P I . : . . . . . 6977 AGAG : GAAATGGAATTTGCTCATTCTATACGGGTGAGCAAAGTGAACATTAAGATGTGTCA R : G N G I C S F Y T G E Q S E H - D V S E : E M E F A H S I R V S K V N I K M C Q - R : K W N L L I L Y G - A K - T L R C V . : . . . . . 7122 G : TACTCCTATGACCTTCTGTTGCAATACTTGCACAAGACAGAATCTATTACAATGCTTGG : V L L - P S V A I L A Q D R I Y Y N A W : Y S Y D L L L Q Y L H K T E S I T M L G S : T P M T F C C N T C T R Q N L L Q C L . . . : . . . 7756 GATCATCAATGAGCGCATTAATTTTCAAG : TTTCTCCTGGACAGCCTGGCTCTATATCTGG D H Q - A H - F S S : F S W T A W L Y I W I I N E R I N F Q : V S P G Q P G S I S G G S S M S A L I F K : F L L D S L A L Y L . . . . . . 9523 TGATACGGAAGTTGTAACTCTTGTTGCAAGTGGCCATGATGCTAGTCTCATAAATCAGAA - Y G S C N S C C K W P - C - S H K S E D T E V V T L V A S G H D A S L I N Q K V I R K L - L L L Q V A M M L V S - I R . . : . . . . 9583 AGAAGTTCTTTGGGGG : ATGCTTGAAGATTCTTTAGAAGAACGGTTAGAAAAGACTGGAGG R S S L G : D A - R F F R R T V R K D W R E V L W G : M L E D S L E E R L E K T G G K K F F G G : C L K I L - K N G - K R L E . . . . . . 11674 TTCTGTTCCAGATTCGGAAAAGTTTGATGGAGATCCGAAGGAAGGAGAAGTGGAAGAAAA F C S R F G K V - W R S E G R R S G R K S V P D S E K F D G D P K E G E V E E N V L F Q I R K S L M E I R R K E K W K K . : . . . . . 11734 CAAG : AAGAAGTCAATTGAAGGTGGTAAACATGGTGCACCTCTTAAAAAACTAAAGAAGGA Q : E E V N - R W - T W C T S - K T K E G K : K K S I E G G K H G A P L K K L K K D T R : R S Q L K V V N M V H L L K N - R R . . . . . . 11973 CAAAGTTGGGATTGCAACAGGGAAATCTTCTCGTACAGAGAGCAGCACAGTGACAACTGC Q S W D C N R E I F S Y R E Q H S D N C K V G I A T G K S S R T E S S T V T T A T K L G L Q Q G N L L V Q R A A Q - Q L . . . . . . 12033 ACCACGTGTCAAACCGGAACTTGCTTTACCTGCTATGTACTCCTCAAACCTATTATCTTA T T C Q T G T C F T C Y V L L K P I I L P R V K P E L A L P A M Y S S N L L S Y H H V S N R N L L Y L L C T P Q T Y Y L . . . . . . 12093 CTTACCAAAAGAAAAAGAGAGGGCCCTATTGTGTTTTTCTCTCCCACGACATCATCCCTG L T K R K R E G P I V F F S P T T S S L L P K E K E R A L L C F S L P R H H P C T Y Q K K K R G P Y C V F L S H D I I P . . . . . . 12153 TACTTGGAAAAGTCATTCTTGTTGGATGTCATAATTTTATTTGAAATACAGTCATCATGA Y L E K S F L L D V I I L F E I Q S S - T W K S H S C W M S - F Y L K Y S H H D V L G K V I L V G C H N F I - N T V I M . . . . . . 12213 TCCATTAGAAAACATCAAGTGAAACGGCTATACAAAGAAGTTGCATAAAAAAGGAAA S I R K H Q V K R L Y K E V A - K R K P L E N I K - N G Y T K K L H K K G I H - K T S S E T A I Q R S C I K K E Maximal non-overlapping open reading frames (>= 64 codons): >C06HBa0046G10.1-4+_PGL-1_AGS-1_PPS_1 (3230 3477,4651 4732,6727 6805,6883 6980,7066 7122,7697 7784,9492 9598,11630 11737,11917 12186) (frame '2'; 1134 bp, 378 residues) 1 TPGVFFFFFP ILKILPFLAM DEEEIEKAVV AYLKKKGFKQ TEIAFQEEQQ VNKNSSSSIH 61 NNNNSANSQI DPDLTKKILS FSEFETSPQR YQEEYSKLRS WAYSSLDLYK HELLRVLYPV 121 FIHCFMELVA RGYIQEARAF FNSYREDHEM THLRDLQKLE GVLSPSHLEE MEFAHSIRVS 181 KVNIKMCQYS YDLLLQYLHK TESITMLGII NERINFQVSP GQPGSISGDT EVVTLVASGH 241 DASLINQKEV LWGMLEDSLE ERLEKTGGSV PDSEKFDGDP KEGEVEENKK KSIEGGKHGA 301 PLKKLKKDKV GIATGKSSRT ESSTVTTAPR VKPELALPAM YSSNLLSYLP KEKERALLCF 361 SLPRHHPCTW KSHSCWMS- AGS-2 (10378 10401,10483 10724) SCR (e 0.750 d 0.427 a 0.000,e 0.888) Exon 1 10378 10401 ( 24 n); score: 0.750 Intron 1 10402 10482 ( 81 n); Pd: 0.427 Pa: 0.000 Exon 2 10483 10724 ( 242 n); score: 0.888 PGS (10378 10401,10483 10724) SGN-U315608+ PGS (10465 10724) SGN-U315609+ PGS (10474 10654) SGN-U335242- PGS (10477 10670) SGN-U342289+ PGS (10479 10724) SGN-U324885+ PGS (10497 10700) SGN-U315611- 3-phase translation of AGS-2 (+strand): . . . : . . . 10378 ATAAAACGAAGAGAATGTGGAGCT : TTGGGGTGGCCCAGTGGTTTGAGTTTGTGACTTCCA I K R R E C G A : L G W P S G L S L - L P - N E E N V E L : W G G P V V - V C D F H K T K R M W S : F G V A Q W F E F V T S . . . . . . 10519 TGTTGGAGGTCTCAAGTTCGAAACCCCTTGCCAGCGAAAGCAAGGAGTTTGCCTTCTGGG C W R S Q V R N P L P A K A R S L P S G V G G L K F E T P C Q R K Q G V C L L G M L E V S S S K P L A S E S K E F A F W . . . . . . 10579 TCGAGCTCGTCGCACCAGGTTTGTCTAGTGCGTGTTACCTCTCATATGTGGTTTGCGAGC S S S S H Q V C L V R V T S H M W F A S R A R R T R F V - C V L P L I C G L R A V E L V A P G L S S A C Y L S Y V V C E . . . . . . 10639 TATTGCATAGGAGCGGGGTTTTTACCCTGTGCGCACCCAAAGGGTAGCGGCTGTGGGTTT Y C I G A G F L P C A H P K G S G C G F I A - E R G F Y P V R T Q R V A A V G F L L H R S G V F T L C A P K G - R L W V . . . 10699 CCCTTGTCATAAAAAAAGAAGAAGAA P L S - K K K K P C H K K R R R S L V I K K E E E Maximal non-overlapping open reading frames (>= 64 codons): >C06HBa0046G10.1-4+_PGL-1_AGS-2_PPS_1 (10380 10401,10483 10685) (frame '0'; 222 bp, 74 residues) 1 KTKRMWSFGV AQWFEFVTSM LEVSSSKPLA SESKEFAFWV ELVAPGLSSA CYLSYVVCEL 61 LHRSGVFTLC APKG- >C06HBa0046G10.1-4+_PGL-1_AGS-2_PPS_2 (10513 10710) (frame '1'; 195 bp, 65 residues) 1 LPCWRSQVRN PLPAKARSLP SGSSSSHQVC LVRVTSHMWF ASYCIGAGFL PCAHPKGSGC 61 GFPLS- PGL 2 (+ strand): 12783 18957 AGS-1 (12783 12841,12934 13003,13141 13180,15924 16088,16222 16298,16517 16633,17685 17950,18063 18158,18252 18327,18408 18957) SCR (e 1.000 d 0.980 a 0.527,e 1.000 d 0.906 a 0.980,e 1.000 d 0.995 a 0.000,e 0.994 d 0.992 a 0.952,e 1.000 d 0.978 a 0.764,e 1.000 d 0.880 a 0.958,e 1.000 d 0.000 a 0.990,e 1.000 d 0.960 a 0.000,e 1.000 d 0.975 a 0.489,e 1.000) Exon 1 12783 12841 ( 59 n); score: 1.000 Intron 1 12842 12933 ( 92 n); Pd: 0.980 Pa: 0.527 Exon 2 12934 13003 ( 70 n); score: 1.000 Intron 2 13004 13140 ( 137 n); Pd: 0.906 Pa: 0.980 Exon 3 13141 13180 ( 40 n); score: 1.000 Intron 3 13181 15923 (2743 n); Pd: 0.995 Pa: 0.000 Exon 4 15924 16088 ( 165 n); score: 0.994 Intron 4 16089 16221 ( 133 n); Pd: 0.992 Pa: 0.952 Exon 5 16222 16298 ( 77 n); score: 1.000 Intron 5 16299 16516 ( 218 n); Pd: 0.978 Pa: 0.764 Exon 6 16517 16633 ( 117 n); score: 1.000 Intron 6 16634 17684 (1051 n); Pd: 0.880 Pa: 0.958 Exon 7 17685 17950 ( 266 n); score: 1.000 Intron 7 17951 18062 ( 112 n); Pd: 0.000 Pa: 0.990 Exon 8 18063 18158 ( 96 n); score: 1.000 Intron 8 18159 18251 ( 93 n); Pd: 0.960 Pa: 0.000 Exon 9 18252 18327 ( 76 n); score: 1.000 Intron 9 18328 18407 ( 80 n); Pd: 0.975 Pa: 0.489 Exon 10 18408 18957 ( 550 n); score: 1.000 PGS (12783 12841,12934 13003,13141 13180,15924 16088,16222 16298,16517 16633,17685 17950,18063 18158,18252 18327,18408 18957) SGN-U319242+ 3-phase translation of AGS-1 (+strand): . . . . . . : 12783 TTGAGTAATGCATCATTGCCCTCTGTTAGCTTCTATACATTTGTTAATACACACAATGG : A L S N A S L P S V S F Y T F V N T H N G : - V M H H C P L L A S I H L L I H T M : D E - C I I A L C - L L Y I C - Y T Q W : . . . . . . 12935 CTAAACTGTGCATCAATATCACATGATGGATCACTAGTGGCTGGTGGATTCTCAGATTCA L N C A S I S H D G S L V A G G F S D S - T V H Q Y H M M D H - W L V D S Q I H T K L C I N I T - W I T S G W W I L R F . : . . . . : . 12995 TCTGTGAAG : GTCTGGGACATGGCAAAGCTTGGGGAACAAACTGGTCCAT : CTTTTTTGCAG S V K : V W D M A K L G E Q T G P : S F L Q L - R : S G T W Q S L G N K L V H : L F C R I C E : G L G H G K A W G T N W S I : F F A . . . . . . 15935 GGGGAGACTGATTCACCTTCAAGTGAGCATGTGCTTGGCGCAAATGGTGGAAGAAGATGT G E T D S P S S E H V L G A N G G R R C G R L I H L Q V S M C L A Q M V E E D V G G D - F T F K - A C A W R K W W K K M . . . . . . 15995 TATACATTACTTCAGGGCCATTCAGGGCCTGTTTATTCTGCATCATTCAGTCCGCACGGG Y T L L Q G H S G P V Y S A S F S P H G I H Y F R A I Q G L F I L H H S V R T G L Y I T S G P F R A C L F C I I Q S A R . . . . : . . 16055 GATTTTCTTCTTTCTTCATCATCAGATTCAACTG : TTCGCTTATGGAGCACAAAGTTAAAT D F L L S S S S D S T : V R L W S T K L N I F F F L H H Q I Q L : F A Y G A Q S - M G F S S F F I I R F N C : S L M E H K V K . . . . . . : 16248 GCTAATGTTGTTTGCTACAAAGGCCACAATTACCCAGTATGGGATGTTCAG : TTTAGCCCA A N V V C Y K G H N Y P V W D V Q : F S P L M L F A T K A T I T Q Y G M F S : L A Q C - C C L L Q R P Q L P S M G C S : V - P . . . . . . 16526 GCTGGACATTATTTTGCCAGTTCTTCACATGACCGCACTGCAAGGATCTGGTCTGTGGAC A G H Y F A S S S H D R T A R I W S V D L D I I L P V L H M T A L Q G S G L W T S W T L F C Q F F T - P H C K D L V C G . . . . . : . 16586 AGGATACAGCCTCTAAGAATAATGGCCGGACACTTGTCAGATGTAGAT : TGTGTGCGATGG R I Q P L R I M A G H L S D V D : C V R W G Y S L - E - W P D T C Q M - I : V C D G Q D T A S K N N G R T L V R C R : L C A M . . . . . . 17697 CACGCAAATTGCAATTACATTGCAACCGGATCAAGCGACAAAACTGTACGCTTGTGGGAC H A N C N Y I A T G S S D K T V R L W D T Q I A I T L Q P D Q A T K L Y A C G T A R K L Q L H C N R I K R Q N C T L V G . . . . . . 17757 GTCCAGAGTGGTGACTGTGTCAGAATTTTCATTGGTCATAGGAGTATGATCCTATCATTG V Q S G D C V R I F I G H R S M I L S L S R V V T V S E F S L V I G V - S Y H W R P E W - L C Q N F H W S - E Y D P I I . . . . . . 17817 GCAATGTCTCCTGATGGTCGATATATGGCATCCGGTGATGAAGATGGAACAGTCATGATG A M S P D G R Y M A S G D E D G T V M M Q C L L M V D I W H P V M K M E Q S - C G N V S - W S I Y G I R - - R W N S H D . . . . . . 17877 TGGGATCTCTCAAGTGGACGTTGTATTACTCCTTTGACCGGTCATTCCTCTTGTGTGTGG W D L S S G R C I T P L T G H S S C V W G I S Q V D V V L L L - P V I P L V C G V G S L K W T L Y Y S F D R S F L L C V . . : . . . . 17937 TCACTTGCTTTTAG : TGGTGAAGGTTCACTTCTTGCATCGGGCTCTGCGGATTGCACTGTA S L A F S : G E G S L L A S G S A D C T V H L L L : V V K V H F L H R A L R I A L - V T C F - : W - R F T S C I G L C G L H C . . . . . : . 18109 AAATTATGGGATGTAACCACAAGCACCAGAGCGCCACTAAAAGAAGAGAA : CAAATCTGGA K L W D V T T S T R A P L K E E N : K S G N Y G M - P Q A P E R H - K K R : T N L E K I M G C N H K H Q S A T K R R E : Q I W . . . . . . 18262 GGTAACAATAGGCTTCGGTTATTGAAGACCCTACCTACCAAAGCTACACCAATCTATGCT G N N R L R L L K T L P T K A T P I Y A V T I G F G Y - R P Y L P K L H Q S M L R - Q - A S V I E D P T Y Q S Y T N L C . : . . . . . 18322 TTGCAC : TTTTCACGAAGAAATCTTTTATTTGCTGCTGGAGCTTTCTCGAAAAGTGCACGA L H : F S R R N L L F A A G A F S K S A R C T : F H E E I F Y L L L E L S R K V H E F A : L F T K K S F I C C W S F L E K C T . . . . . . 18462 GTCCCTTGCTTTAAAGTCTCTTGACGTGAGATTACATCATGGTTCCCTTGCAAATTTTGG V P C F K V S - R E I T S W F P C K F W S L A L K S L D V R L H H G S L A N F G S P L L - S L L T - D Y I M V P L Q I L . . . . . . 18522 TGCAATCATCAATGGCAAGTTTTACTTCTCAGACCTCGGTTTTGTTAGAGGAGCAACTCA C N H Q W Q V L L L R P R F C - R S N S A I I N G K F Y F S D L G F V R G A T H V Q S S M A S F T S Q T S V L L E E Q L . . . . . . 18582 TGTTGGTGACACGTGCATCTCACAATACAATTTTGCATCACATGGTGTAATTTGGAATGT C W - H V H L T I Q F C I T W C N L E C V G D T C I S Q Y N F A S H G V I W N V M L V T R A S H N T I L H H M V - F G M . . . . . . 18642 GGAGGTCTTTTATTTTCTATGGTGGATGAACGTCGGATTTGTAAATGCTTATTTAATGTA G G L L F S M V D E R R I C K C L F N V E V F Y F L W W M N V G F V N A Y L M Y W R S F I F Y G G - T S D L - M L I - C . . . . . . 18702 TGTCCTTAAAATGACGATGTTCCTGTAACCCTGATACCATTGCTTATCCCATTGGTGGAA C P - N D D V P V T L I P L L I P L V E V L K M T M F L - P - Y H C L S H W W N M S L K - R C S C N P D T I A Y P I G G . . . . . . 18762 TATTGGAAGCATGGGCAGAAAGGTATACAATTTAGCATCTTCTAAAACTATATTTTGGGA Y W K H G Q K G I Q F S I F - N Y I L G I G S M G R K V Y N L A S S K T I F W E I L E A W A E R Y T I - H L L K L Y F G . . . . . . 18822 GTAGGATGTCTCAAGCATTTGTGGTTTTGTGTATGTTAACCATGTTTGTTTACAGACCCT V G C L K H L W F C V C - P C L F T D P - D V S S I C G F V Y V N H V C L Q T L S R M S Q A F V V L C M L T M F V Y R P . . . . . . 18882 TTCCCTGTTTCTACCTTGTGGATTATGTATGAATTTTAGCTGAACTAAAAAGTTTGAAAT F P V S T L W I M Y E F - L N - K V - N S L F L P C G L C M N F S - T K K F E I F P C F Y L V D Y V - I L A E L K S L K . . 18942 TCGTTTGGATTAGCTT S F G L A R L D - L F V W I S Maximal non-overlapping open reading frames (>= 64 codons): >C06HBa0046G10.1-4+_PGL-2_AGS-1_PPS_1 (12783 12841,12934 13003,13141 13180,15924 16088,16222 16298,16517 16633,17685 17950,18063 18158,18252 18327,18408 18485) (frame '1'; 1041 bp, 347 residues) 1 LSNASLPSVS FYTFVNTHNG LNCASISHDG SLVAGGFSDS SVKVWDMAKL GEQTGPSFLQ 61 GETDSPSSEH VLGANGGRRC YTLLQGHSGP VYSASFSPHG DFLLSSSSDS TVRLWSTKLN 121 ANVVCYKGHN YPVWDVQFSP AGHYFASSSH DRTARIWSVD RIQPLRIMAG HLSDVDCVRW 181 HANCNYIATG SSDKTVRLWD VQSGDCVRIF IGHRSMILSL AMSPDGRYMA SGDEDGTVMM 241 WDLSSGRCIT PLTGHSSCVW SLAFSGEGSL LASGSADCTV KLWDVTTSTR APLKEENKSG 301 GNNRLRLLKT LPTKATPIYA LHFSRRNLLF AAGAFSKSAR VPCFKVS- PGL 3 (- strand): 24211 20093 AGS-1 (21126 21059,20783 20093) SCR (e 0.507 d 0.996 a 0.000,e 0.878) Exon 1 21126 21059 ( 68 n); score: 0.507 Intron 1 21058 20784 ( 275 n); Pd: 0.996 Pa: 0.000 Exon 2 20783 20093 ( 691 n); score: 0.878 PGS (21126 21059,20783 20093) SGN-U340995- 3-phase translation of AGS-1 (-strand): . . . . . . 21126 CATAAGAAGAAAAAACCTAGGAATGCTGAACCATCACTAAAGCATGAAATGGATGCTTCA H K K K K P R N A E P S L K H E M D A S I R R K N L G M L N H H - S M K W M L H - E E K T - E C - T I T K A - N G C F . : . . . . . 21066 CCTAAAAG : AGATGTTAGTAGTAGTACTCCCAAATCCAAGTCCAGGCAAGATACTCCATCA P K R : D V S S S T P K S K S R Q D T P S L K : E M L V V V L P N P S P G K I L H Q T - K : R C - - - Y S Q I Q V Q A R Y S I . . . . . . 20731 ACAACTGCCAACAAGTCCAAGCAAGAAACAGTTAAAGCTGCCAACAAGTCCAAAACCAAA T T A N K S K Q E T V K A A N K S K T K Q L P T S P S K K Q L K L P T S P K P K N N C Q Q V Q A R N S - S C Q Q V Q N Q . . . . . . 20671 ACCCCCCAAAGTGGTGGCAAGTCCGGTGCCAATGGTTCGGAGAAGCTAAAATCTAGTTCA T P Q S G G K S G A N G S E K L K S S S P P K V V A S P V P M V R R S - N L V H N P P K W W Q V R C Q W F G E A K I - F . . . . . . 20611 TCAAAGGTTAAAGAGAGTGGGAACCAGAAGGAAAAAGCAACTAACTCAGCAAAAACCCCT S K V K E S G N Q K E K A T N S A K T P Q R L K R V G T R R K K Q L T Q Q K P L I K G - R E W E P E G K S N - L S K N P . . . . . . 20551 GATGGCAGCACCAAGGAGAAACTGTCTAGTGCATCAAAGGAACGACAGAGTGAGCCCAAG D G S T K E K L S S A S K E R Q S E P K M A A P R R N C L V H Q R N D R V S P R - W Q H Q G E T V - C I K G T T E - A Q . . . . . . 20491 AGTGGAAAGAAGCGTGCGAGGGGGAAAAACTGATTATTTGTTGCACATTGTAATAGTGGA S G K K R A R G K N - L F V A H C N S G V E R S V R G G K T D Y L L H I V I V E E W K E A C E G E K L I I C C T L - - W . . . . . . 20431 GCTCCTCCTACTTACATTCTTGGACCCATTGCGGCTCATTGAAGATGCTACGGTGCCTAC A P P T Y I L G P I A A H - R C Y G A Y L L L L T F L D P L R L I E D A T V P T S S S Y L H S W T H C G S L K M L R C L . . . . . . 20371 TATTCCTTGTGTGCTATTGCTGTTTGGCAAAATCTTGAGGTGCAGCTTGCAAATGCCTGT Y S L C A I A V W Q N L E V Q L A N A C I P C V L L L F G K I L R C S L Q M P V L F L V C Y C C L A K S - G A A C K C L . . . . . . 20311 CTTAGCCTTTTGGTTATGGTGGTGCGTGCTAGGTTTCTGGATAGTTTTTTTTTTCAGTTT L S L L V M V V R A R F L D S F F F Q F L A F W L W W C V L G F W I V F F F S L S - P F G Y G G A C - V S G - F F F S V . . . . . . 20251 AAAGCATATTGTTAGAGATGTAATTGGTTAGATTTATCATTTTGGTTGCTAGCTGTATTC K A Y C - R C N W L D L S F W L L A V F K H I V R D V I G - I Y H F G C - L Y S - S I L L E M - L V R F I I L V A S C I . . . . . . 20191 ACTTTTGTTACTTTTAGCCCTCTTAGCGTAGGAAGGAGATACTCTGTTGATGAGTATTTT T F V T F S P L S V G R R Y S V D E Y F L L L L L A L L A - E G D T L L M S I L H F C Y F - P S - R R K E I L C - - V F . . . . 20131 ATGGATGCGTTGGATCATAAATTACCATCTCTTCTCTTG M D A L D H K L P S L L L W M R W I I N Y H L F S Y G C V G S - I T I S S L Maximal non-overlapping open reading frames (>= 64 codons): >C06HBa0046G10.1-4-_PGL-3_AGS-1_PPS_1 (20622 20221) (frame '2'; 399 bp, 133 residues) 1 NLVHQRLKRV GTRRKKQLTQ QKPLMAAPRR NCLVHQRNDR VSPRVERSVR GGKTDYLLHI 61 VIVELLLLTF LDPLRLIEDA TVPTIPCVLL LFGKILRCSL QMPVLAFWLW WCVLGFWIVF 121 FFSLKHIVRD VIG- >C06HBa0046G10.1-4-_PGL-3_AGS-1_PPS_2 (21126 21059,20783 20459) (frame '1'; 390 bp, 130 residues) 1 HKKKKPRNAE PSLKHEMDAS PKRDVSSSTP KSKSRQDTPS TTANKSKQET VKAANKSKTK 61 TPQSGGKSGA NGSEKLKSSS SKVKESGNQK EKATNSAKTP DGSTKEKLSS ASKERQSEPK 121 SGKKRARGKN - AGS-2 (24211 23369,23239 23126,22953 22825,22364 22291,22131 22080,21992 21906,21833 21796,21127 21059,20963 20400) SCR (e 1.000 d 1.000 a 0.960,e 1.000 d 0.998 a 0.991,e 1.000 d 1.000 a 0.678,e 1.000 d 0.984 a 0.997,e 1.000 d 0.583 a 1.000,e 1.000 d 1.000 a 0.996,e 1.000 d 0.964 a 0.999,e 1.000 d 0.996 a 0.972,e 0.988) Exon 1 24211 23369 ( 843 n); score: 1.000 Intron 1 23368 23240 ( 129 n); Pd: 1.000 Pa: 0.960 Exon 2 23239 23126 ( 114 n); score: 1.000 Intron 2 23125 22954 ( 172 n); Pd: 0.998 Pa: 0.991 Exon 3 22953 22825 ( 129 n); score: 1.000 Intron 3 22824 22365 ( 460 n); Pd: 1.000 Pa: 0.678 Exon 4 22364 22291 ( 74 n); score: 1.000 Intron 4 22290 22132 ( 159 n); Pd: 0.984 Pa: 0.997 Exon 5 22131 22080 ( 52 n); score: 1.000 Intron 5 22079 21993 ( 87 n); Pd: 0.583 Pa: 1.000 Exon 6 21992 21906 ( 87 n); score: 1.000 Intron 6 21905 21834 ( 72 n); Pd: 1.000 Pa: 0.996 Exon 7 21833 21796 ( 38 n); score: 1.000 Intron 7 21795 21128 ( 668 n); Pd: 0.964 Pa: 0.999 Exon 8 21127 21059 ( 69 n); score: 1.000 Intron 8 21058 20964 ( 95 n); Pd: 0.996 Pa: 0.972 Exon 9 20963 20400 ( 564 n); score: 0.988 PGS (24211 23369,23239 23126,22953 22825,22364 22291,22131 22080,21992 21906,21833 21796,21127 21059,20963 20400) SGN-U323143+ 3-phase translation of AGS-2 (-strand): . . . . . . 24211 ACGGCTGAGAGCGGGAGGGATGAGGCATGTTTGGAAGATATTGAGCCTGCTGTGAATGGA T A E S G R D E A C L E D I E P A V N G R L R A G G M R H V W K I L S L L - M D G - E R E G - G M F G R Y - A C C E W . . . . . . 24151 TCTCCCAAATCAATCACAAGCAATGGTGGTAGTTTGGAGAATGTGAGATTGACTTCTGAA S P K S I T S N G G S L E N V R L T S E L P N Q S Q A M V V V W R M - D - L L K I S Q I N H K Q W W - F G E C E I D F - . . . . . . 24091 ACAGAATCGCTGATGAAAGCTGGAGCTCATGATGAGGTGGATCTCCATGATGCTTCAAAG T E S L M K A G A H D E V D L H D A S K Q N R - - K L E L M M R W I S M M L Q R N R I A D E S W S S - - G G S P - C F K . . . . . . 24031 ATACCATCTGAATCTGATGATTCAAGGGTTGAAAAGTCTACAAAGTCGGAGCCCAAGTCT I P S E S D D S R V E K S T K S E P K S Y H L N L M I Q G L K S L Q S R S P S L D T I - I - - F K G - K V Y K V G A Q V . . . . . . 23971 ATGAAGTCAGAGCCCAAGTCGGAGCAACCTTCTAAGAAGAGAGGAAGGAAGACAGTCTCT M K S E P K S E Q P S K K R G R K T V S - S Q S P S R S N L L R R E E G R Q S L Y E V R A Q V G A T F - E E R K E D S L . . . . . . 23911 TCAATAAACTCAGCCGAATCTTCTCACCAAGCTCCTGAAGGAAGTGGAAAAGAAATTGAG S I N S A E S S H Q A P E G S G K E I E Q - T Q P N L L T K L L K E V E K K L R F N K L S R I F S P S S - R K W K R N - . . . . . . 23851 AAGCTTCAAGATCATCAGAATGATCAAAACAAAGATGACCATAGTTCAGCTTCTGAAGAT K L Q D H Q N D Q N K D D H S S A S E D S F K I I R M I K T K M T I V Q L L K I E A S R S S E - S K Q R - P - F S F - R . . . . . . 23791 CCAGTGGTTGAGCAGTCCAATCTGTTGGAGAAGGAACCAGAAACTAATCAGCACTCTGCA P V V E Q S N L L E K E P E T N Q H S A Q W L S S P I C W R R N Q K L I S T L H S S G - A V Q S V G E G T R N - S A L C . . . . . . 23731 CCCAAAGAATCTGAGGAGGAAGTTGTGGATGTTGCTCCTCCATCCCAAGGTCAGAGCCTT P K E S E E E V V D V A P P S Q G Q S L P K N L R R K L W M L L L H P K V R A F T Q R I - G G S C G C C S S I P R S E P . . . . . . 23671 CCTGAAGAGATTGCACTGAAGAAGGGTGATCTCCCAATGGAGGACAACTCAAATCAAGAC P E E I A L K K G D L P M E D N S N Q D L K R L H - R R V I S Q W R T T Q I K T S - R D C T E E G - S P N G G Q L K S R . . . . . . 23611 GGTGAGTCTAAGAAGGAAATTGAAGCTGGAAGTGACTTGGAAGTTAAGCAGGTGAGGCGC G E S K K E I E A G S D L E V K Q V R R V S L R R K L K L E V T W K L S R - G A R - V - E G N - S W K - L G S - A G E A . . . . . . 23551 CCTTTGAGGAAGACTCCTTTAGAACCTTGTCGTAAGGAGAAAGGTGGATCCACCAGTGAT P L R K T P L E P C R K E K G G S T S D L - G R L L - N L V V R R K V D P P V I P F E E D S F R T L S - G E R W I H Q - . . . . . . 23491 ACCGAGGCTAAAAAGCTGAAGCAATCGGGTAAGAATGTTGACACCAAAAATAAGAGTCAG T E A K K L K Q S G K N V D T K N K S Q P R L K S - S N R V R M L T P K I R V R Y R G - K A E A I G - E C - H Q K - E S . . . . . . 23431 GTTGGTCCATCTGCGAGAAATAAGGAAGATAGCAAAAAACGTGGACATGGAAAAGCTAGT V G P S A R N K E D S K K R G H G K A S L V H L R E I R K I A K N V D M E K L V G W S I C E K - G R - Q K T W T W K S - . : . . . . . 23371 CAG : GAGACGTTGCCTTCACAAGAGTCTCCTGATCGCTCTGTTAAACATGATGAAGATAAC Q : E T L P S Q E S P D R S V K H D E D N R : R R C L H K S L L I A L L N M M K I T S : G D V A F T R V S - S L C - T - - R - . . . . . . : 23182 GAAGAGGAAATTCCCAGGACCACTACAAAGAGAAAGCGTTCTTCAAGCAAGGGCAGG : GGG E E E I P R T T T K R K R S S S K G R : G K R K F P G P L Q R E S V L Q A R A G : G R R G N S Q D H Y K E K A F F K Q G Q : G . . . . . . 22950 AGTAGGCAAGTTGTGCAGAAGAGTGTGCCTACGCCCGAGTCTCCCGACAATTCAACTAAA S R Q V V Q K S V P T P E S P D N S T K V G K L C R R V C L R P S L P T I Q L N E - A S C A E E C A Y A R V S R Q F N - . . . . . . 22890 CATATAAGCGACGAAGATGAGACTGACACAAGTGCAAAGAAAAAGCCTTCTTCAGGCAAC H I S D E D E T D T S A K K K P S S G N I - A T K M R L T Q V Q R K S L L Q A T T Y K R R R - D - H K C K E K A F F R Q . : . . . . . 22830 GACAGG : GTAACAGAGACTGTGCAATGTGATAAGAATCTGGTTGGTAGAAAGATCAGAGTT D R : V T E T V Q C D K N L V G R K I R V T G : - Q R L C N V I R I W L V E R S E F R Q : G N R D C A M - - E S G W - K D Q S . . : . . . . 22310 TGGTGGCCATTAGATGAACT : ATTTTATGAAGGGACGGTTAGCAATTATGATTCTTCCAGG W W P L D E L : F Y E G T V S N Y D S S R G G H - M N : Y F M K G R L A I M I L P G L V A I R - T : I L - R D G - Q L - F F Q . . : . . . . 22091 AAGAAGTTCACA : GTTGACTATACTGATGGAGAGACAGAAAAATTGAATCTCTTGAAGGAA K K F T : V D Y T D G E T E K L N L L K E R S S Q : L T I L M E R Q K N - I S - R N E E V H : S - L Y - W R D R K I E S L E G . . . . : . . 21944 CGCTGGGAACTTGTTGAAGATGATAATATGTCAGAAGAG : GAGCAAGTAGCCAGCGCTGAT R W E L V E D D N M S E E : E Q V A S A D A G N L L K M I I C Q K R : S K - P A L M T L G T C - R - - Y V R R : G A S S Q R - . . : . . . . 21812 GCAGCAGCTTCGGAAAG : TCATAAGAAGAAAAAACCTAGGAATGCTGAACCATCACTAAAG A A A S E S : H K K K K P R N A E P S L K Q Q L R K : V I R R K N L G M L N H H - S C S S F G K : S - E E K T - E C - T I T K . . . : . . . 21084 CATGAAATGGATGCTTCACCTAAAAG : CAAGTCAAAAGAGGCGACAGCTAAATCTGGACAG H E M D A S P K S : K S K E A T A K S G Q M K W M L H L K : A S Q K R R Q L N L D R A - N G C F T - K : Q V K R G D S - I W T . . . . . . 20929 AAATCCAAGGGTAAACTCAACTTGAAAGATGGCACCTCAAAATCTGCCGGGAAAGCTGAT K S K G K L N L K D G T S K S A G K A D N P R V N S T - K M A P Q N L P G K L M E I Q G - T Q L E R W H L K I C R E S - . . . . . . 20869 GACACAACCAGCAGCAAGTCTGCGGCTCCATCCAAAAGGAGCACTGGCAAATCAGTTGAT D T T S S K S A A P S K R S T G K S V D T Q P A A S L R L H P K G A L A N Q L I - H N Q Q Q V C G S I Q K E H W Q I S - . . . . . . 20809 ACTGAAAAGCCATCTGCCAGGTCTAAAGATGTTAGTAGTAGTACTCCCAAATCCAAGTCC T E K P S A R S K D V S S S T P K S K S L K S H L P G L K M L V V V L P N P S P Y - K A I C Q V - R C - - - Y S Q I Q V . . . . . . 20749 AGGCAAGATACTCCATCAACAACTGCCAACAAGTCCAAGCAAGAAACAGTTAAAGCTGCC R Q D T P S T T A N K S K Q E T V K A A G K I L H Q Q L P T S P S K K Q L K L P Q A R Y S I N N C Q Q V Q A R N S - S C . . . . . . 20689 AACAAGTCCAAAACCAAAACCCCCCAAAGTGGTGGCAAGTCCGGTGCCAATGGTTCGGAG N K S K T K T P Q S G G K S G A N G S E T S P K P K P P K V V A S P V P M V R R Q Q V Q N Q N P P K W W Q V R C Q W F G . . . . . . 20629 AAGCTAAAATCTAGTTCATCAAAGGTTAAAGAGAGTGGGAACCAGAAGGAAAAAGCAACT K L K S S S S K V K E S G N Q K E K A T S - N L V H Q R L K R V G T R R K K Q L E A K I - F I K G - R E W E P E G K S N . . . . . . 20569 AACTCAGCAAAAACCCCTGATGGCAGCACCAAGGAGAAACTGTCTAGTGCATCAAAGGAA N S A K T P D G S T K E K L S S A S K E T Q Q K P L M A A P R R N C L V H Q R N - L S K N P - W Q H Q G E T V - C I K G . . . . . . 20509 CGACAGAGTGAGCCCAAGAGTGGAAAGAAGCGTGCGAGGGGGAAAAACTGATTATTTGTT R Q S E P K S G K K R A R G K N - L F V D R V S P R V E R S V R G G K T D Y L L T T E - A Q E W K E A C E G E K L I I C . . . . . 20449 GCACATTGTAATAGTGGAGCTCCTCCTACTTACATTCTTGGACCCATTGC A H C N S G A P P T Y I L G P I H I V I V E L L L L T F L D P L C T L - - W S S S Y L H S W T H C Maximal non-overlapping open reading frames (>= 64 codons): >C06HBa0046G10.1-4-_PGL-3_AGS-2_PPS_1 (24211 23369,23239 23126,22953 22825,22364 22291,22131 22080,21992 21906,21833 21796,21127 21059,20963 20459) (frame '1'; 1908 bp, 636 residues) 1 TAESGRDEAC LEDIEPAVNG SPKSITSNGG SLENVRLTSE TESLMKAGAH DEVDLHDASK 61 IPSESDDSRV EKSTKSEPKS MKSEPKSEQP SKKRGRKTVS SINSAESSHQ APEGSGKEIE 121 KLQDHQNDQN KDDHSSASED PVVEQSNLLE KEPETNQHSA PKESEEEVVD VAPPSQGQSL 181 PEEIALKKGD LPMEDNSNQD GESKKEIEAG SDLEVKQVRR PLRKTPLEPC RKEKGGSTSD 241 TEAKKLKQSG KNVDTKNKSQ VGPSARNKED SKKRGHGKAS QETLPSQESP DRSVKHDEDN 301 EEEIPRTTTK RKRSSSKGRG SRQVVQKSVP TPESPDNSTK HISDEDETDT SAKKKPSSGN 361 DRVTETVQCD KNLVGRKIRV WWPLDELFYE GTVSNYDSSR KKFTVDYTDG ETEKLNLLKE 421 RWELVEDDNM SEEEQVASAD AAASESHKKK KPRNAEPSLK HEMDASPKSK SKEATAKSGQ 481 KSKGKLNLKD GTSKSAGKAD DTTSSKSAAP SKRSTGKSVD TEKPSARSKD VSSSTPKSKS 541 RQDTPSTTAN KSKQETVKAA NKSKTKTPQS GGKSGANGSE KLKSSSSKVK ESGNQKEKAT 601 NSAKTPDGST KEKLSSASKE RQSEPKSGKK RARGKN- ... finished at: Mon Jul 24 23:35:28 2006 ________________________________________________________________________________ Sequence 5: C06HBa0046G10.1-5, from 1 to 19191, both strands analyzed. ... started at: Mon Jul 24 23:35:28 2006 EST library file: /tmp/cxgn-bacpublish-resources-3cdDhp/lycopersicum_combined_unigene_seqs; matching gDNA +strand ... ... found all matches, elapsed seconds = 2 ... matches indexed, elapsed seconds = 2 HitsTableSize = 3 EST library file: /tmp/cxgn-bacpublish-resources-3cdDhp/lycopersicum_combined_unigene_seqs; matching gDNA -strand ... ... found all matches, elapsed seconds = 2 ... matches indexed, elapsed seconds = 2 HitsTableSize = 1 ******************************************************************************** EST sequence 1 -strand 897 n (File: SGN-U345587-) 1 TTTGTCTTGG TGAGTTGAAA AGCCCCCTTC CTGAGTGACC CGACACAAAT TTCAGTGATT 61 TATCCGGAAG GTTACTAAGA AAAGGCTTCC ACAAGGTGCA TTTCACAAAC TTTTAACACA 121 AAACCAGACT CAAAACAGAT AAAAGAGGGT GAAAAACAAC TCAAATCAAG ATATAACTGG 181 TAAAGGGCAA CAACCCTAGA GCTGTAATAC ACAACCAAGA TCTAAACCGA AACCCCATTG 241 GCTAAAAAAT TTGCAAACTT TAAGCTAAAC CACAAAATGG GGGTGCCATT ATCTTCAGCA 301 AGAAGAAAGA AAAATCAAAT CTTTCCTCAA ACTAACTTAA AGGGTGGTTC AGATCTTGAT 361 TTACAAATAG GGAAAAGATT GAAAAAAAAT GCAAGAATCA TGCAAAGCTG AAGCCTTTTT 421 TGCTCAATTT ACAACCTTGG ATTCTTTAAA TAAAAAGAGA GAGAGCCCAG ATCTCATACA 481 CATTCATTAT AACTATTTAT ATATACATAA CATGAAAAAG ATTCAGATAT ATTGCAGAGA 541 AGGGGGTAGG GAGGGTGTCA GGATGTGGGT AGGTTGGGTG GGTGGTGGGT TGAAGAGGGG 601 AGAAAGAAGG AGATTCAGAT GCTGATAACA AGGCTAAAGA AAACAAAAAA TGTCATTATT 661 CATCATTCAA TTTCTTCATG CACTAGTACT ATGTACATAC ATTTTATACA TAAACATAAA 721 AACAACAAGT GAATAAAGCT TTCTTCTTCA TTAGGAAATT TTTGGGTTTG AAGGGGGTGG 781 GGTAAGTGAG CTTAATTATG AACCTTGGCA TGGATCCTCG TGCCGAATTC CTGCAGCCCG 841 GGGGATCCAC TAGTTCTAGA GCGGNCCGCC ACCACGGTGG AGCTCCAGCT CTTATGT Predicted gene structure (within gDNA segment 4250 to 506): Exon 1 2735 1926 ( 810 n); cDNA 6 815 ( 810 n); score: 0.964 MATCH C06HBa0046G10.1-5- SGN-U345587- 0.964 810 0.903 C PGS_C06HBa0046G10.1-5-_SGN-U345587- (2735 1926) Alignment (genomic DNA sequence = upper lines): CTGTTTGAGT CTGAATTGCC TCTTCCTGAG TCTACTGACT CAGATTTCAG TGATTTCTTC 2676 || ||||| || || ||||||||| | | ||| || ||||||| |||||| | | CTTGGTGAGT TGAAAAGCCC CCTTCCTGAG TGACCCGACA CAAATTTCAG TGATTTATCC 65 GGAAGCTTAC TCAGAAAATG CTTCCACATG GTGCTTTTCA CAAACTTTTA ACACAAAAAC 2616 ||||| |||| | |||||| | |||||||| | |||| ||||| |||||||||| |||||||| | GGAAGGTTAC TAAGAAAAGG CTTCCACAAG GTGCATTTCA CAAACTTTTA ACACAAAACC 125 AGACTCAAAA CAGATAAAAG AGGGTGAAAA AACACTCAAA TCAAGATATT ACTGGTAAAG 2556 |||||||||| |||||||||| |||||||||| | ||||||| ||||||||| |||||||||| AGACTCAAAA CAGATAAAAG AGGGTGAAAA ACAACTCAAA TCAAGATATA ACTGGTAAAG 185 GGCAACAACC CTAGAGCTGT AATACACAAC CAAGATCTAA ACCAAAACCC CATTGGCTAA 2496 |||||||||| |||||||||| |||||||||| |||||||||| ||| |||||| |||||||||| GGCAACAACC CTAGAGCTGT AATACACAAC CAAGATCTAA ACCGAAACCC CATTGGCTAA 245 AAAATCTGCA AACTTTAAGC TAAACCACAA AATGGGGGTG CCATTATCTT CAGCAAGAAG 2436 ||||| |||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAATTTGCA AACTTTAAGC TAAACCACAA AATGGGGGTG CCATTATCTT CAGCAAGAAG 305 AAAGAAAAAT CAAATCTTTC CTCAAACTAA CTTAAAGGGT GGTTCAGATC TTGATTTACA 2376 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAGAAAAAT CAAATCTTTC CTCAAACTAA CTTAAAGGGT GGTTCAGATC TTGATTTACA 365 AATAGGGAAA AGATTGAAAA AAAATGCAAG AATCATGCAA AGCTGAAGCC TTTTTTGCTC 2316 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATAGGGAAA AGATTGAAAA AAAATGCAAG AATCATGCAA AGCTGAAGCC TTTTTTGCTC 425 AATTTACAAC CTTGGATTCT TTAAATAAAA AGAGAGAGAG CCCAGATCTC ATACACATTC 2256 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATTTACAAC CTTGGATTCT TTAAATAAAA AGAGAGAGAG CCCAGATCTC ATACACATTC 485 ATTATAACTA TTTATATATA CATAACATGA AAAAGATTCA GATATATTGC AGAGAAGGGG 2196 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTATAACTA TTTATATATA CATAACATGA AAAAGATTCA GATATATTGC AGAGAAGGGG 545 GTAGGGAGGG TGTCAGGATG TGGGTAGGTT GGGTGGGTGG TGGGTTGAAG AGGGGAGAAA 2136 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTAGGGAGGG TGTCAGGATG TGGGTAGGTT GGGTGGGTGG TGGGTTGAAG AGGGGAGAAA 605 GAAGGAGATT CAGATGCTGA TAACAAGGCT AAAGAAAACA AAAAATGTCA TTATTCATCA 2076 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAGGAGATT CAGATGCTGA TAACAAGGCT AAAGAAAACA AAAAATGTCA TTATTCATCA 665 TTCAATTTCT TCATGCACTA GTACTATGTA CATACATTTT ATACATAAAC ATAAAAACAA 2016 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCAATTTCT TCATGCACTA GTACTATGTA CATACATTTT ATACATAAAC ATAAAAACAA 725 CAAGTGAATA AAGCTTTCTT CTTCATTAGG AAATTTTTGG GTTTGAAGGG GGTGGGGTAA 1956 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAGTGAATA AAGCTTTCTT CTTCATTAGG AAATTTTTGG GTTTGAAGGG GGTGGGGTAA 785 GTGAGCTTAA TTATGAACCT TGGCATGGAT 1926 |||||||||| |||||||||| |||||||||| GTGAGCTTAA TTATGAACCT TGGCATGGAT 815 hqPGS_C06HBa0046G10.1-5-_SGN-U345587- (2735 1926) ******************************************************************************** EST sequence 3 +strand 682 n (File: SGN-U330738+) 1 AAGCACCCAA AAGGAGGTGA TGTTTTTGAG TGAGCTGGAA GAAATTTTGG AAGTTATTAA 61 CATGGCTGAG TTCCAAAAAG TGATGGTTCC CTTGTTCTGG CGGATCGGTT GCTGCATCAA 121 TAGTTACCAT TTTCAGGTTG CTGAAAGGGC TCTCTTCCTT TGGAATAATG ACCAAATTGT 181 CAATTTGATT GCACATAACC GGCACGTGAT TCTCCCGATT ATATTCCCAG CTGTGGAAAG 241 CAATACTCAG AACCACTGGA ATCATGCTGT GCAGAACTTG AGTCTAAATG TAAGAAGGAT 301 GTTCTCCGAA ATGGATGATG TACTTTTCCT TGCTTGTCAT TCTCATTACA AGGAAGAACA 361 GGAGAAAATA GACTTGGAAT CTGAAAAACG GAAGGAAGCA TGGGAACAGC TGGAGACTGC 421 AGCTAGTCTA CGTCCACCTG TAGCTGGAAA CATTGCTGTC CTGGTAACGC CTTTAGCAAC 481 TTCAATCACT TGCTAAGAGG TGATGACTCC ACTCTATCCT TGTCCCCGTG TTTTTCTGTG 541 TATGTTCCAC GCAATCTAGG AATCATGGAT GGAAAATGGC TGTTGTCTGG AGCAGGTTTT 601 TGAAGATCAA CCCGATTAAC AGCCTTATCT CTGTTGTAAC CTTAGTCCTG CAACTGTGTT 661 GAGAGCGCGA TGGGGGGGGG GG Predicted gene structure (within gDNA segment 3048 to 6545): Exon 1 3648 3783 ( 136 n); cDNA 1 136 ( 136 n); score: 1.000 Intron 1 3784 5281 (1498 n); Pd: 0.998 (s: 1.00), Pa: 0.795 (s: 1.00) Exon 2 5282 5828 ( 547 n); cDNA 137 682 ( 546 n); score: 0.998 MATCH C06HBa0046G10.1-5+ SGN-U330738+ 0.999 683 1.001 C PGS_C06HBa0046G10.1-5+_SGN-U330738+ (3648 3783,5282 5828) Alignment (genomic DNA sequence = upper lines): AAGCACCCAA AAGGAGGTGA TGTTTTTGAG TGAGCTGGAA GAAATTTTGG AAGTTATTAA 3707 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGCACCCAA AAGGAGGTGA TGTTTTTGAG TGAGCTGGAA GAAATTTTGG AAGTTATTAA 60 CATGGCTGAG TTCCAAAAAG TGATGGTTCC CTTGTTCTGG CGGATCGGTT GCTGCATCAA 3767 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATGGCTGAG TTCCAAAAAG TGATGGTTCC CTTGTTCTGG CGGATCGGTT GCTGCATCAA 120 TAGTTACCAT TTTCAGGTAC TAATACTTGT GTCTCTAGAC ATGTATATAT GTGTGCGTGT 3827 |||||||||| |||||| TAGTTACCAT TTTCAG.... .......... .......... .......... .......... 136 GTACTTCAAT TTTTATTTGT TGCGTAGTTT CTGAGTTGTT GGTTAGATAT GGTTTGTTCA 3887 .......... .......... .......... .......... .......... .......... 136 AGGATCTATG AACTAATATT GTGATAAGAA TTCTCCTTCT AATTGATACA GAGGATTCAG 3947 .......... .......... .......... .......... .......... .......... 136 GCTAATGTGG GATGGAAATG CAATTGATTG AATGATGTAT TCTTCATCCA GTTGTTTGAC 4007 .......... .......... .......... .......... .......... .......... 136 TTGTAAAGAA TCAGGATCCT TCCAGATTTA CATGTATTTT TAGCTGTGTG GAATTTTTAT 4067 .......... .......... .......... .......... .......... .......... 136 ATGAAAATCT TTAAAATTAC TACCAGCTCA GTTCCCTAGA ATAAAATTTC TAGATTGCTG 4127 .......... .......... .......... .......... .......... .......... 136 ACAGGAGTTT TTCATTTAGT TTGAAATGGT CTCAGCAATG AGTCAAGAAC TTAAGATTAT 4187 .......... .......... .......... .......... .......... .......... 136 GAGCCAAAAA GACTTGTGCC CCAAGAGAAT GTTCAGGATT TTTTTTGTCT ATACGAAACA 4247 .......... .......... .......... .......... .......... .......... 136 ACAGCCTTGT CAATGAACTG GGTAAACAAG TGGTTTCAAG GGATGACAAT AGATAGAAGA 4307 .......... .......... .......... .......... .......... .......... 136 GTGCTGATAA AGAAGATCTA TTACTGTTTC CCAGGGCATT TCTGGAATCA AGTTAATAAA 4367 .......... .......... .......... .......... .......... .......... 136 ATTCATCAGA AAACCTGCCA ATAAGAAGAA TGAGATATAT TGCTTAATCT GCATTATTCA 4427 .......... .......... .......... .......... .......... .......... 136 GTCAATCATT TAAGTATCTT TGTCCATTCT TAGACAGACT CAAAAAATGG ATTTTCAAAG 4487 .......... .......... .......... .......... .......... .......... 136 ACAGAGAGAA ACTGATGAAG TAATTGGATC TTTGACAGAG TTAACTTAAA TAAAACCAAG 4547 .......... .......... .......... .......... .......... .......... 136 TATCATGGGC CTGTTTGGCC AAATCTTCTG ACATCAATCA GTCATTGCAC TTCGATGAAC 4607 .......... .......... .......... .......... .......... .......... 136 GCCACCACCA TATTCTGAAG AGTTGGTGGT GGTGGTTATA GTATGATATC TTTAAACCTG 4667 .......... .......... .......... .......... .......... .......... 136 CAAGTTCTCA ACACATCTAA ACATGTGTAA ATTTCTACTT GTTATAAACC AAGTCTTTCT 4727 .......... .......... .......... .......... .......... .......... 136 GGTAGATACT TGGATTTCAA TCATTATATG GCATCACATG GTTCTTCTCC GTTTATCTTT 4787 .......... .......... .......... .......... .......... .......... 136 TATTGTTGAG GCTGGAAATT GTTGGGTTCA GGGACACAAT TTGCCAAAAA CTATAGCATC 4847 .......... .......... .......... .......... .......... .......... 136 TCACTTCCAA GGCATATAGT ATATTTTTGC GACTAAGTAA TGATCTTCTA ACCAAGAGTG 4907 .......... .......... .......... .......... .......... .......... 136 AGGACTACGC TTATGAATTG TGTATTTATC TAAATACTGG AGGCTTCTAC ATGAAAAGTG 4967 .......... .......... .......... .......... .......... .......... 136 GTTTGTGGAT GGGGAAGAGA GAGAGAGAGA AGAATGAGTA TATGGCAAAA TGGTTGAAAA 5027 .......... .......... .......... .......... .......... .......... 136 ACAAATTTAG TTCATTGTTG GTTGGTTTCT GAAACCCCTT CCTCCTCTTT ATCTTTCCAT 5087 .......... .......... .......... .......... .......... .......... 136 TCACTCTAGA GTTCTCTCTC AACCCCCCTT TTTTCCCAGT GGGGAGTGAT AGATATGAAC 5147 .......... .......... .......... .......... .......... .......... 136 TTCAGGCCTT CTCTGGTAGA AAGGTTGCCA TATGTGATGA TCTCTTTGAT GCTGCATTAG 5207 .......... .......... .......... .......... .......... .......... 136 TCTGTTATCA GTTACCCCCC TCCCTCCCAA AGACATTTAC TTGTCATCCT AACAGTCAAA 5267 .......... .......... .......... .......... .......... .......... 136 CTTCTATTTT CCAGGTTGCT GAAAGGGCTC TCTTCCTTTG GAATAATGAC CAAATTGTCA 5327 |||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ....GTTGCT GAAAGGGCTC TCTTCCTTTG GAATAATGAC CAAATTGTCA 182 ATTTGATTGC ACATAACCGG CACGTGATTC TCCCGATTAT ATTCCCAGCT GTGGAAAGCA 5387 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTTGATTGC ACATAACCGG CACGTGATTC TCCCGATTAT ATTCCCAGCT GTGGAAAGCA 242 ATACTCAGAA CCACTGGAAT CATGCTGTGC AGAACTTGAG TCTAAATGTA AGAAGGATGT 5447 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATACTCAGAA CCACTGGAAT CATGCTGTGC AGAACTTGAG TCTAAATGTA AGAAGGATGT 302 TCTCCGAAAT GGATGATGTA CTTTTCCTTG CTTGTCATTC TCATTACAAG GAAGAACAGG 5507 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTCCGAAAT GGATGATGTA CTTTTCCTTG CTTGTCATTC TCATTACAAG GAAGAACAGG 362 AGAAAATAGA CTTGGAATCT GAAAAACGGA AGGAAGCATG GGAACAGCTG GAGACTGCAG 5567 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAAAATAGA CTTGGAATCT GAAAAACGGA AGGAAGCATG GGAACAGCTG GAGACTGCAG 422 CTAGTCTACG TCCACCTGTA GCTGGAAACA TTGCTGTCCT GGTAACGCCT TTAGCAACTT 5627 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTAGTCTACG TCCACCTGTA GCTGGAAACA TTGCTGTCCT GGTAACGCCT TTAGCAACTT 482 CAATCACTTG CTAAGAGGTG ATGACTCCAC TCTATCCTTG TCCCCGTGTT TTTCTGTGTA 5687 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAATCACTTG CTAAGAGGTG ATGACTCCAC TCTATCCTTG TCCCCGTGTT TTTCTGTGTA 542 TGTTCCACGC AATCTAGGAA TCATGGATGG AAAATGGCTG TTGTCTGGAG CAGGTTTTTG 5747 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTTCCACGC AATCTAGGAA TCATGGATGG AAAATGGCTG TTGTCTGGAG CAGGTTTTTG 602 AAGATCAACC CGATTAACAG CCTTATCTCT GTTGTAACCT TAGTCCTGCA ACTGTGTTGA 5807 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGATCAACC CGATTAACAG CCTTATCTCT GTTGTAACCT TAGTCCTGCA ACTGTGTTGA 662 GAGCGCGAAT GGGGGGGGGG G 5828 ||||||| || |||||||||| | GAGCGCG-AT GGGGGGGGGG G 682 hqPGS_C06HBa0046G10.1-5+_SGN-U330738+ (3648 3783,5282 5828) ******************************************************************************** EST sequence 2 +strand 1046 n (File: SGN-U327907+) 1 TTCCATTTTG GCTCCATAGC CACCGGAGAA ACCATCAGTT CTAAACAATC CTAAGAAACC 61 CATCTACCTT GCTTTTCCTC CATTTTCAAG GAACATCTCC CTTACTTCAT TTTCCGGCGA 121 GCTCAAACAC CAAAACGAGC TCGCCACGAT CTCTGCCTCT GTTCCTCCTC CAGACCACCA 181 ACAACAACCG CCCTTAAACC CCTACGAAAC AGCCCCTAAA CCAGCTGAAA CCAGCAAGCC 241 AAACGGCCCC CACGCAACCT ATTTTCCCCT TTTTCAGATT CGCCGACGAG CTCGAAGTTC 301 TCTACCACCA GGCCCACCAG ATCTCCACCA CACGCCTTCT CCACACCAGA AACCCCACGA 361 GTACCACCAC CTCGAAAACC CCTCCCCCCC TCCCTTTTCT GTTTTCCCGG CAACCAAACA 421 GCCATCAAAC TCCTGTGAAA ACCCCACCTC TTTCTCGATT TTCCTCACCA CTAAACAACC 481 ACGAAAGATC ACCCATTCTT TCCCCACCAA CGAGCTAACA ACAGCCCCAT TCCGGCAAAA 541 CAACAAGCTG CGGCGAAGCT ACTAGACCAT ATCTCGTACA AACGAGCTCG GAGCTTTTGT 601 CCCAACAACA TTGTCATCTT CAAATCTGCT TGTGAAAGTA ACGACATGGG AAAATACTAC 661 ACAAGATGAG CCCATTGATA TTGTAAATAT CGATGATCAC GACCTTCCTA ATTTACGGCT 721 CACCTTCAGC TAGTGATAGT GATGATTTGC CTAATGCTGA GGAATCAGGA GATAATGTTC 781 CATTTGAGGC ATCACAGTGA TGATTTTTTG ACTCCCAATT GATCACCAAG ACCAATGTCC 841 ATGAGTCTGT TTCGTAATCG TGAAATTTCT ATCTTGATCA TATCTCGGAT GGTCCAGATA 901 TCTTTGGTGA TACACATGAT AAATATACAT CACAACGTAC GTTCCATGAA CCAGAAGATT 961 TCATGAATGA TGCTATTTAT ATTGAAAAAG TTACTCAATT CAAAGAAGTA GTTGCAAAGA 1021 GCAGTTAAAC TTCTACATTT GAACAT Predicted gene structure (within gDNA segment 241 to 9411): Exon 1 2109 2126 ( 18 n); cDNA 618 635 ( 18 n); score: 0.667 Intron 1 2127 2952 ( 826 n); Pd: 0.900 (s: 0), Pa: 0.000 (s: 0) Exon 2 2953 2967 ( 15 n); cDNA 636 650 ( 15 n); score: 0.667 Intron 2 2968 7899 (4932 n); Pd: 0.791 (s: 0), Pa: 0.000 (s: 0.82) Exon 3 7900 8302 ( 403 n); cDNA 651 1046 ( 396 n); score: 0.885 MATCH C06HBa0046G10.1-5+ SGN-U327907+ 0.885 436 0.417 C PGS_C06HBa0046G10.1-5+_SGN-U327907+ (2109 2126,2953 2967,7900 8302) Alignment (genomic DNA sequence = upper lines): CTTGTTATCA GCATCTGAAT CTCCTTCTTT CTCCCCTCTT CAACCCACCA CCCACCCAAC 2168 ||| ||| || | ||| CTTCAAATCT GCTTGTGA.. .......... .......... .......... .......... 635 CTACCCACAT CCTGACACCC TCCCTACCCC CTTCTCTGCA ATATATCTGA ATCTTTTTCA 2228 .......... .......... .......... .......... .......... .......... 635 TGTTATGTAT ATATAAATAG TTATAATGAA TGTGTATGAG ATCTGGGCTC TCTCTCTTTT 2288 .......... .......... .......... .......... .......... .......... 635 TATTTAAAGA ATCCAAGGTT GTAAATTGAG CAAAAAAGGC TTCAGCTTTG CATGATTCTT 2348 .......... .......... .......... .......... .......... .......... 635 GCATTTTTTT TCAATCTTTT CCCTATTTGT AAATCAAGAT CTGAACCACC CTTTAAGTTA 2408 .......... .......... .......... .......... .......... .......... 635 GTTTGAGGAA AGATTTGATT TTTCTTTCTT CTTGCTGAAG ATAATGGCAC CCCCATTTTG 2468 .......... .......... .......... .......... .......... .......... 635 TGGTTTAGCT TAAAGTTTGC AGATTTTTTA GCCAATGGGG TTTTGGTTTA GATCTTGGTT 2528 .......... .......... .......... .......... .......... .......... 635 GTGTATTACA GCTCTAGGGT TGTTGCCCTT TACCAGTAAT ATCTTGATTT GAGTGTTTTT 2588 .......... .......... .......... .......... .......... .......... 635 TCACCCTCTT TTATCTGTTT TGAGTCTGTT TTTGTGTTAA AAGTTTGTGA AAAGCACCAT 2648 .......... .......... .......... .......... .......... .......... 635 GTGGAAGCAT TTTCTGAGTA AGCTTCCGAA GAAATCACTG AAATCTGAGT CAGTAGACTC 2708 .......... .......... .......... .......... .......... .......... 635 AGGAAGAGGC AATTCAGACT CAAACAGTCC GAATGCAAGC TCAAATTTAG GCCCTGGAAG 2768 .......... .......... .......... .......... .......... .......... 635 GCCTAATAGT GTTCCAAGGA GGACTTCCTC AGTTGTGTTC CCAGCAAGTG TGATTGCAGG 2828 .......... .......... .......... .......... .......... .......... 635 GATCGAGCCT TTGATTTCCT TCAAAGATGT TCCCAGCTCT GAAAAGATGA ATCTTTTTAT 2888 .......... .......... .......... .......... .......... .......... 635 CAGTAAGTTA AGTCTCTGCT GTGTAGACTT TGATTTCAGG GACCCAACTA AGAATGTAGC 2948 .......... .......... .......... .......... .......... .......... 635 AGAAAAGGAA CTAAAAAGGG CTACATTATT TGAGCTTTTG GATTTTGTAT CTGCTAATCC 3008 ||| || | | | || ....AAGTAA CGACATGGG. .......... .......... .......... .......... 650 ACCCAAATTT TCAGAACCTG CAATTCTTGC ATTGTGTAAA ACATGTGCTG TTAATTTGTT 3068 .......... .......... .......... .......... .......... .......... 650 TCGGGTTTTC CCTCCTAATT ATCGGTCTAA TAATAGCCAC GCCAGCGAAA ATGATGATGA 3128 .......... .......... .......... .......... .......... .......... 650 TGAGCCTACT TTTGACCCTG CCTGGCCTCA CTTGCAAATT GTGTATGATC TGTTGCTTAA 3188 .......... .......... .......... .......... .......... .......... 650 GTTTGTAACA TCCTCTTCTC TTGAAGCTAA GGTTGCAAAG AAGTATATAA ACCATCAGTT 3248 .......... .......... .......... .......... .......... .......... 650 CATCTTGAAA TTACTTGACT TGTTTGATTC TGAAGATCCA AGGGAAAGAG ATTGTTTGAA 3308 .......... .......... .......... .......... .......... .......... 650 AGCTATTTTG CATAGGATTT ATGGCAAGTT CATGGTTCAC AGGCCTTATA TAAGGAAGAG 3368 .......... .......... .......... .......... .......... .......... 650 TATAAGCAAT GTGTTTTACC GTGTTGTGTT CGAATCGGAG AAACATAATG GGATTGCTGA 3428 .......... .......... .......... .......... .......... .......... 650 ACTTTTGGAG ATATTTGGAA GTGTGGTTAC AGGGTTCGCT CTGCCATTGA AAGAGGAGCA 3488 .......... .......... .......... .......... .......... .......... 650 TAAGATCTTT TTGTCAAGGA CCTTGATTCC TTTGCACAAG CCAAAATCCT TGGGGATTTA 3548 .......... .......... .......... .......... .......... .......... 650 CTTTCAACAG TTATCATATT GTATTAACCA GTTCATAGAG AAAGATCCCA AATTGGCTAG 3608 .......... .......... .......... .......... .......... .......... 650 CACTGTGATT AGGGGTTTGT TGAAGTACTG GCCTATCACA AGCACCCAAA AGGAGGTGAT 3668 .......... .......... .......... .......... .......... .......... 650 GTTTTTGAGT GAGCTGGAAG AAATTTTGGA AGTTATTAAC ATGGCTGAGT TCCAAAAAGT 3728 .......... .......... .......... .......... .......... .......... 650 GATGGTTCCC TTGTTCTGGC GGATCGGTTG CTGCATCAAT AGTTACCATT TTCAGGTACT 3788 .......... .......... .......... .......... .......... .......... 650 AATACTTGTG TCTCTAGACA TGTATATATG TGTGCGTGTG TACTTCAATT TTTATTTGTT 3848 .......... .......... .......... .......... .......... .......... 650 GCGTAGTTTC TGAGTTGTTG GTTAGATATG GTTTGTTCAA GGATCTATGA ACTAATATTG 3908 .......... .......... .......... .......... .......... .......... 650 TGATAAGAAT TCTCCTTCTA ATTGATACAG AGGATTCAGG CTAATGTGGG ATGGAAATGC 3968 .......... .......... .......... .......... .......... .......... 650 AATTGATTGA ATGATGTATT CTTCATCCAG TTGTTTGACT TGTAAAGAAT CAGGATCCTT 4028 .......... .......... .......... .......... .......... .......... 650 CCAGATTTAC ATGTATTTTT AGCTGTGTGG AATTTTTATA TGAAAATCTT TAAAATTACT 4088 .......... .......... .......... .......... .......... .......... 650 ACCAGCTCAG TTCCCTAGAA TAAAATTTCT AGATTGCTGA CAGGAGTTTT TCATTTAGTT 4148 .......... .......... .......... .......... .......... .......... 650 TGAAATGGTC TCAGCAATGA GTCAAGAACT TAAGATTATG AGCCAAAAAG ACTTGTGCCC 4208 .......... .......... .......... .......... .......... .......... 650 CAAGAGAATG TTCAGGATTT TTTTTGTCTA TACGAAACAA CAGCCTTGTC AATGAACTGG 4268 .......... .......... .......... .......... .......... .......... 650 GTAAACAAGT GGTTTCAAGG GATGACAATA GATAGAAGAG TGCTGATAAA GAAGATCTAT 4328 .......... .......... .......... .......... .......... .......... 650 TACTGTTTCC CAGGGCATTT CTGGAATCAA GTTAATAAAA TTCATCAGAA AACCTGCCAA 4388 .......... .......... .......... .......... .......... .......... 650 TAAGAAGAAT GAGATATATT GCTTAATCTG CATTATTCAG TCAATCATTT AAGTATCTTT 4448 .......... .......... .......... .......... .......... .......... 650 GTCCATTCTT AGACAGACTC AAAAAATGGA TTTTCAAAGA CAGAGAGAAA CTGATGAAGT 4508 .......... .......... .......... .......... .......... .......... 650 AATTGGATCT TTGACAGAGT TAACTTAAAT AAAACCAAGT ATCATGGGCC TGTTTGGCCA 4568 .......... .......... .......... .......... .......... .......... 650 AATCTTCTGA CATCAATCAG TCATTGCACT TCGATGAACG CCACCACCAT ATTCTGAAGA 4628 .......... .......... .......... .......... .......... .......... 650 GTTGGTGGTG GTGGTTATAG TATGATATCT TTAAACCTGC AAGTTCTCAA CACATCTAAA 4688 .......... .......... .......... .......... .......... .......... 650 CATGTGTAAA TTTCTACTTG TTATAAACCA AGTCTTTCTG GTAGATACTT GGATTTCAAT 4748 .......... .......... .......... .......... .......... .......... 650 CATTATATGG CATCACATGG TTCTTCTCCG TTTATCTTTT ATTGTTGAGG CTGGAAATTG 4808 .......... .......... .......... .......... .......... .......... 650 TTGGGTTCAG GGACACAATT TGCCAAAAAC TATAGCATCT CACTTCCAAG GCATATAGTA 4868 .......... .......... .......... .......... .......... .......... 650 TATTTTTGCG ACTAAGTAAT GATCTTCTAA CCAAGAGTGA GGACTACGCT TATGAATTGT 4928 .......... .......... .......... .......... .......... .......... 650 GTATTTATCT AAATACTGGA GGCTTCTACA TGAAAAGTGG TTTGTGGATG GGGAAGAGAG 4988 .......... .......... .......... .......... .......... .......... 650 AGAGAGAGAA GAATGAGTAT ATGGCAAAAT GGTTGAAAAA CAAATTTAGT TCATTGTTGG 5048 .......... .......... .......... .......... .......... .......... 650 TTGGTTTCTG AAACCCCTTC CTCCTCTTTA TCTTTCCATT CACTCTAGAG TTCTCTCTCA 5108 .......... .......... .......... .......... .......... .......... 650 ACCCCCCTTT TTTCCCAGTG GGGAGTGATA GATATGAACT TCAGGCCTTC TCTGGTAGAA 5168 .......... .......... .......... .......... .......... .......... 650 AGGTTGCCAT ATGTGATGAT CTCTTTGATG CTGCATTAGT CTGTTATCAG TTACCCCCCT 5228 .......... .......... .......... .......... .......... .......... 650 CCCTCCCAAA GACATTTACT TGTCATCCTA ACAGTCAAAC TTCTATTTTC CAGGTTGCTG 5288 .......... .......... .......... .......... .......... .......... 650 AAAGGGCTCT CTTCCTTTGG AATAATGACC AAATTGTCAA TTTGATTGCA CATAACCGGC 5348 .......... .......... .......... .......... .......... .......... 650 ACGTGATTCT CCCGATTATA TTCCCAGCTG TGGAAAGCAA TACTCAGAAC CACTGGAATC 5408 .......... .......... .......... .......... .......... .......... 650 ATGCTGTGCA GAACTTGAGT CTAAATGTAA GAAGGATGTT CTCCGAAATG GATGATGTAC 5468 .......... .......... .......... .......... .......... .......... 650 TTTTCCTTGC TTGTCATTCT CATTACAAGG AAGAACAGGA GAAAATAGAC TTGGAATCTG 5528 .......... .......... .......... .......... .......... .......... 650 AAAAACGGAA GGAAGCATGG GAACAGCTGG AGACTGCAGC TAGTCTACGT CCACCTGTAG 5588 .......... .......... .......... .......... .......... .......... 650 CTGGAAACAT TGCTGTCCTG GTAACGCCTT TAGCAACTTC AATCACTTGC TAAGAGGTGA 5648 .......... .......... .......... .......... .......... .......... 650 TGACTCCACT CTATCCTTGT CCCCGTGTTT TTCTGTGTAT GTTCCACGCA ATCTAGGAAT 5708 .......... .......... .......... .......... .......... .......... 650 CATGGATGGA AAATGGCTGT TGTCTGGAGC AGGTTTTTGA AGATCAACCC GATTAACAGC 5768 .......... .......... .......... .......... .......... .......... 650 CTTATCTCTG TTGTAACCTT AGTCCTGCAA CTGTGTTGAG AGCGCGAATG GGGGGGGGGG 5828 .......... .......... .......... .......... .......... .......... 650 GGGGGGCTAA ACTAACATTT GTTTCTTTTA TTTTACTTTA TGAACATTTT GTCATGGCCT 5888 .......... .......... .......... .......... .......... .......... 650 TATATGTTAT CTAAATGGCT AATATTTTCA TCACCTTTTT GCCTGGCTTC TTTAGTGTTC 5948 .......... .......... .......... .......... .......... .......... 650 AGCTTTGCTA GTTGGATGGA AGTGGAAAAG AAAATATAAA GATCTCAGGC AATTTGTTTG 6008 .......... .......... .......... .......... .......... .......... 650 ACACCATTTC TTGACATTGA CTAATTTGTA GTTTTGTACT ATATTTATGA AGCTTCTAAT 6068 .......... .......... .......... .......... .......... .......... 650 TATTACCTTT TCATTTTGCC CTCAAACAGA TGTTTTTATA CTCTTTAAGT TCCCATTTAT 6128 .......... .......... .......... .......... .......... .......... 650 TAAAAATGGT TTATTATAGT GATATTTATG CACTCACTTG CTTAAAAGTT ATGACTTAAG 6188 .......... .......... .......... .......... .......... .......... 650 AATGTGCTAA CTTGTATGGT GAGGCAAATC TAGAATTTAG TTTATGACTT CCAGTCTGAT 6248 .......... .......... .......... .......... .......... .......... 650 CAACAGATTA AAAAGAAAAA AGGACAGCTC GGTGTAGTAA AGCTCTCACC ATGTGCAAGG 6308 .......... .......... .......... .......... .......... .......... 650 TTTAATGATT ATGTGGACTT ATTGTATGTG GTTTTACCTT ATATTTTTAC AAGAGATTAT 6368 .......... .......... .......... .......... .......... .......... 650 TTTTACAAGA ATGTGGACTT TTGTGATTCT TCAAAGTCAA AATTTATTTG GTACCTGTTT 6428 .......... .......... .......... .......... .......... .......... 650 GTAGCATTAT AATAATGAGC TGTAAAGGGG TACTTTACAG CGAAATAATA CCATAGAAGA 6488 .......... .......... .......... .......... .......... .......... 650 GTACGGAATA CGACCACATT CAACAACTAT ACGATAAATA GAAAAAAGTA GTACTACTAT 6548 .......... .......... .......... .......... .......... .......... 650 TTCTCAACTA AAAAAGAGTT TTGAGAATCA AATTAAGTCA TAAAAATATA AAAGTAATCA 6608 .......... .......... .......... .......... .......... .......... 650 AAATAAGTTA TTATTTTAGA GTAACTAAAA TAAGTTTAGT AAAAGAAAAA GTTTTACTAT 6668 .......... .......... .......... .......... .......... .......... 650 ATCCGAGAAT CTAAACGTTT TCCGTTAGTG TCATAATGTT TATTTTTAAT ATATAACGGA 6728 .......... .......... .......... .......... .......... .......... 650 ACTTTTTATT ACACTTTATA AAGTGGAGTT TTTTCTTCCA CTTTATGAAG TGGAACTTTT 6788 .......... .......... .......... .......... .......... .......... 650 TATTCCATTT TATAAAGTGA AACTTTTTAT TACACATTAT AAGAAGAATA TTTTTCACGT 6848 .......... .......... .......... .......... .......... .......... 650 ATTGAAGAAG CTTTTCCAGT GTTATACAAA TTATATTGAT TTTGATATGT CATTAAAACG 6908 .......... .......... .......... .......... .......... .......... 650 AAAAAAAATA TTTCATTATG TACTTTTGTT CTGAAAAATC TTTCAATCTC TATTTAAGGA 6968 .......... .......... .......... .......... .......... .......... 650 CGTTTATGGA TAGTTGATAG CACCTACAAT ATAAAATCTT CTATATTTGT TCATTTCAAT 7028 .......... .......... .......... .......... .......... .......... 650 CTAAAAGAAA TGTCTTCTAC ACCTAAAGTT AAAGTTTCAT TTTATTGGAA TGACGAAATT 7088 .......... .......... .......... .......... .......... .......... 650 ATTCATGACG GAAATACCGT TTATTATAAT TGTCCTCCCA AAAACAATGT TAAATATCAA 7148 .......... .......... .......... .......... .......... .......... 650 ATTAATATCC GATATCATAA ATTTATTTCA TCAATTTATA AAAGAATGGG TATAAACAGT 7208 .......... .......... .......... .......... .......... .......... 650 ACGGATTATA ATTTATTTAT AGTCGAAAAA TACCCTACTT CATTTTTATC ACAAGGACAA 7268 .......... .......... .......... .......... .......... .......... 650 GTAAATTTTG GAGAGTGAAT TATCTATAAT GACGAATATT TAACCGACTT TGTGAGGGTT 7328 .......... .......... .......... .......... .......... .......... 650 CCAAATGACT ATATAGATCA AATCAAGTTA ACAACACTTG AAATCTATGT TAGGAAGGAG 7388 .......... .......... .......... .......... .......... .......... 650 CCTAAGATTA GTCAACAATG TTCTCATTTA TCAGTCGATG TCCATCCCTA ATTAGAAAAT 7448 .......... .......... .......... .......... .......... .......... 650 CGTAATAGCA TTGATGAATT TCCGATAATT CAATCTACTA ATTTTCCTAA AATGACTCAT 7508 .......... .......... .......... .......... .......... .......... 650 TATCAAAATA TTCATACTGG CCGATATGAT TTTGATTTAA ACGAAACTAT CAATGAAAGT 7568 .......... .......... .......... .......... .......... .......... 650 GATCGGTAAT GCTCAATTAT TATATTTCGG TTATTGTTTG TTGAATTTGT CAATTATTTA 7628 .......... .......... .......... .......... .......... .......... 650 TTAATTTATA TTATTTATTA TTCTTATTAT TATATATTTT GTAGCGGTTT ACCTCAGCAA 7688 .......... .......... .......... .......... .......... .......... 650 GATAGGGATA TTGCTCCAAG TTATGGACTA AATAATTATT TTGGTCAGTC TTCACACTTT 7748 .......... .......... .......... .......... .......... .......... 650 GAAATGACGA AAAATGTTGG GACATCCTCA AATTTTCATG TCTCGCCTAC TTTTGATGTA 7808 .......... .......... .......... .......... .......... .......... 650 GATGATTATC GCTATGTCTA ACACTATTTT TTTTTTTGAA TAAGTTAATT ATATGAGCCA 7868 .......... .......... .......... .......... .......... .......... 650 AATATTTATA TAATTTTTTA CATATATAAA AAAAATATTA CACAAGATGA GCCAATTGAT 7928 |||||| || |||||||||| ||| |||||| .......... .......... .......... .AAAATACTA CACAAGATGA GCCCATTGAT 679 CCTGTGAATA TCAATAATCG TGATCTTCCT AA-TTACGGC TCACCTTCAG CTAGTAATAG 7987 ||| |||| || || ||| || |||||| || ||||||| |||||||||| ||||| |||| ATTGTAAATA TCGATGATCA CGACCTTCCT AATTTACGGC TCACCTTCAG CTAGTGATAG 739 TGATGATTTG CCTAATGCTG AGGAATCAGG AGATAATGTT CCATTTGAGG CATCATCTAG 8047 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||| | || TGATGATTTG CCTAATGCTG AGGAATCAGG AGATAATGTT CCATTTGAGG CATCA-C-AG 797 TGATGATGAT TTTGACTCCC ATTCGATCGC CAAGACCAAT GTCCATGAGT CCGTTTCGTA 8107 ||||||| | |||||||||| | | |||| | |||||||||| |||||||||| | |||||||| TGATGAT-TT TTTGACTCCC AATTGATCAC CAAGACCAAT GTCCATGAGT CTGTTTCGTA 856 ATCATTAATT CCTTATCTTG ATCATCTCCC GGATAGTCCA TATATCTTTG GTGATACACA 8167 ||| | || | ||||||| ||||| || | |||| ||||| ||||||||| |||||||||| ATCGTGAAAT TTCTATCTTG ATCATATCTC GGATGGTCCA GATATCTTTG GTGATACACA 916 TGATGAGTAT ACATCACAAC GTACGTGGCA TGAACCAGAA GATTTCATGA ATGATGCTAT 8227 |||| | ||| |||||||||| |||||| || |||||||||| |||||||||| |||||||||| TGATAAATAT ACATCACAAC GTACGTTCCA TGAACCAGAA GATTTCATGA ATGATGCTAT 976 TTATATTGAA AAAGACATGT TATTCAATTC AAATAAGCAG TTGCAAAGAG CAGTAAAACT 8287 |||||||| ||| | | || || ||||||| ||| ||| || |||||||||| |||| ||||| TTATATTG-- AAA-A-A-GT TACTCAATTC AAAGAAGTAG TTGCAAAGAG CAGTTAAACT 1031 TTTACATTTG AAGAT 8302 | |||||||| || || TCTACATTTG AACAT 1046 hqPGS_C06HBa0046G10.1-5+_SGN-U327907+ (7900 8302) ******************************************************************************** EST sequence 4 +strand 2174 n (File: SGN-U326225+) 1 ACCCCTCTGG AACCACACAG ACGAGCTACA TTGATTGTAT GACCGATCGG AGAAGGTAGA 61 AACCCTAGCT CTGCAATCGA GGCACCGCCG TAGAACGGTG TTGCGGGCAG CTCATGAGCT 121 GTTAATAATG CTTAGCTCGT CCCTGATTCA AGAGTACAGT GACAGTTGCT CCTTATTTAT 181 ATAAAGCTCT AGAATTGTGG TGGAAGACAA TGCAGTTGTA GCTCTGACAA TTGGCATATC 241 ACCACCTGGG TCAATGAGGA ATGCAACTAT GGCAACTGGA TCTTCTAATC TTAAAGTGCC 301 TACTATGCGA ATCACAAGAG CACGGGCAAA AACCTTGGGT TCATCAGGAG GACTACCACC 361 TCTACACCCA TCTGTCAGAC AGGATAAGAA ACAGGGACTT GTAACACAAG GAACAAAATC 421 CAAAAGACCA GCCCCAGATG AGAACAAACC AGCTAATTCT TCCAGTACTG CTTCTCAACA 481 GCCTAAGCGA AGGGCTGTTC TCAGGGATGT CACTAATGTG CTTTGTGAAA ATCCGTACAT 541 GAATTGCATC AATGGAAGCA AATTTCAGGT TAAGAAATTC TCTGATAAGA GGAATTCAAA 601 GGTGACACCT GCTCTTTTGG TGAAAAAGCT GAGCTTGAAG ATAGAAAAGA GAGTGTGATT 661 GAAGAAGCAA AAATGGTAAA GGTTGAGGAA TCACAAGAAC ACTGTTCACA AGCACACTTC 721 AAGGACCACC CATTTACTCA GCCAAGTGAA TATATCACCG CCGCTCAAAG TGGTTTAGTT 781 GATCTTATGC CTGTGAATAG GAGTTCATGT AATGACATTA CCCTCCAGAC TACAACACCA 841 AAAGATGAAA GCAAGGTTTG CTTGAAACAG GAAGGCTCCA ATTCGCTTAG TATTGCAGAT 901 ATAGATTCAA AACACAAGGA TCCACTAATG TGTAGTCTGT ATGCTCCTGA TATATATAAC 961 AATTTGCAAG CCATGGAGCT TGACCGGCGG CCTTCCTTTA ATTATATGGA AAAGCTTCAG 1021 CGGGACATTA ACAAGGGTAT GCGAAGTATT CTTATTGATT GGCTTGTGGA GGTATCTGAA 1081 GAATATAGGC TGGTTCCGGA CACTCTTTAC CTGACTGTAC ATCTTATTGA TAGGTTCCTT 1141 TCTGAGCATT ACATTGAAAA ACAAAAACTG CAGCTGCTTG GAGTTACCTG CATGCTAATT 1201 GCTTCCAAAT ATGAAGAAAT TTGTGCACCT CGTGTGGAAG AATTTTGCTT TATTACAGAC 1261 AACACTTACT CGAAAGAAGA GGTAGTAAGA ATGGAAAGTC TGGTTCTGAA TTTTTTGGGC 1321 TTTCAACTTG CTGCTCCGAC CACCAAAAAG TTCCTGAGGA GATTCGTTCA AGCATCACAA 1381 GCTTCTTATG AGGTTCCCTC TGTTGAACTG GAATTCATGG CAAACTATTT AGCAGAGTTA 1441 ACACTAGCTG AATATAGTTT TCTCAAGTTT CTTCCATCTG TTACTGCTGC ATCAGCTGTA 1501 TTTCTAGCCA GATGGACACT TGATCAATCT AACCACCCAT GGAATTCAAC TTTGGAGCAC 1561 TACACTACAT ATAAGGCGTC AGATCTGAAA ACTACAGTTC TTTTGCTGCA AGATTTACAG 1621 ATGAACACCA GTGGAAGCAC TCTGAATGCC ATCCGTGAAA AGTATAAACA ACCAAAGTTC 1681 AAGTCCGTGG CAACTTTATC GTCTCCAAAA CCAGTCCAAT CACTGTTCTA GGAAATGCTG 1741 ATTTTAAGTC TCGGTGGCCA ATCCATGTTT GGCAGATCCA GTGTCACTTT TTCAAGCGAA 1801 GGAACATTAA TCTTTAACAT ACAATAATTC ATCCTTCCTG GAAAGAGACA CATTCTTTTC 1861 AACCCTCTTT CGAATTTTAA CCACATCTAT CATCCTACCA TGGCCCGTCA GAGTATACAG 1921 AAAGCTGTAG ATTTGAATGA AGTGGTAGCA CTAAGTTAAA AAGTAATGGC AATATGTAAG 1981 TAACTTCACA GCACCTGGTT AGCTTCTTGC TATCATGTAT ATGAAGCTGT TTGAGAGCTC 2041 TTCTTGTTAA AATGGTTCCA AATTTGACGT TTCTATTCAT TAAGCGCAAT AAATCCTTTT 2101 CCATTCTGGA CGAGATACAA ATTGTTTAAG TCTATCAAGC TTCGTAGCTT TGCGGAAAAA 2161 AAAAAAAAAA AAAA Predicted gene structure (within gDNA segment 19191 to 9608): Exon 1 19139 19005 ( 135 n); cDNA 1 134 ( 134 n); score: 0.985 Intron 1 19004 17845 (1160 n); Pd: 0.969 (s: 1.00), Pa: 0.958 (s: 1.00) Exon 2 17844 17764 ( 81 n); cDNA 135 215 ( 81 n); score: 1.000 Intron 2 17763 16278 (1486 n); Pd: 0.927 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 3 16277 15925 ( 353 n); cDNA 216 568 ( 353 n); score: 1.000 Intron 3 15924 15736 ( 189 n); Pd: 0.988 (s: 1.00), Pa: 0.970 (s: 1.00) Exon 4 15735 15459 ( 277 n); cDNA 569 844 ( 276 n); score: 0.996 Intron 4 15458 14343 (1116 n); Pd: 0.934 (s: 1.00), Pa: 0.994 (s: 1.00) Exon 5 14342 14209 ( 134 n); cDNA 845 978 ( 134 n); score: 1.000 Intron 5 14208 13931 ( 278 n); Pd: 0.977 (s: 1.00), Pa: 0.973 (s: 1.00) Exon 6 13930 13838 ( 93 n); cDNA 979 1071 ( 93 n); score: 1.000 Intron 6 13837 12994 ( 844 n); Pd: 0.962 (s: 1.00), Pa: 0.993 (s: 1.00) Exon 7 12993 12860 ( 134 n); cDNA 1072 1205 ( 134 n); score: 1.000 Intron 7 12859 12535 ( 325 n); Pd: 0.922 (s: 1.00), Pa: 0.997 (s: 1.00) Exon 8 12534 12459 ( 76 n); cDNA 1206 1281 ( 76 n); score: 1.000 Intron 8 12458 11734 ( 725 n); Pd: 0.896 (s: 1.00), Pa: 0.710 (s: 1.00) Exon 9 11733 11657 ( 77 n); cDNA 1282 1358 ( 77 n); score: 1.000 Intron 9 11656 11570 ( 87 n); Pd: 0.967 (s: 1.00), Pa: 0.893 (s: 0) Exon 10 11569 11536 ( 34 n); cDNA 1359 1392 ( 34 n); score: 1.000 Intron 10 11535 11454 ( 82 n); Pd: 0.785 (s: 0), Pa: 0.965 (s: 1.00) Exon 11 11453 11304 ( 150 n); cDNA 1393 1542 ( 150 n); score: 1.000 Intron 11 11303 11219 ( 85 n); Pd: 0.997 (s: 1.00), Pa: 0.949 (s: 1.00) Exon 12 11218 11084 ( 135 n); cDNA 1543 1677 ( 135 n); score: 1.000 Intron 12 11083 11003 ( 81 n); Pd: 1.000 (s: 1.00), Pa: 0.527 (s: 1.00) Exon 13 11002 10528 ( 475 n); cDNA 1678 2151 ( 474 n); score: 0.985 PPA cDNA 2156 2174 MATCH C06HBa0046G10.1-5- SGN-U326225+ 0.995 2154 0.991 C PGS_C06HBa0046G10.1-5-_SGN-U326225+ (19139 19005,17844 17764,16277 15925,15735 15459,14342 14209,13930 13838,12993 12860,12534 12459,11733 11657,11569 11536,11453 11304,11218 11084,11002 10528) Alignment (genomic DNA sequence = upper lines): ACCCCTTTTG GAACCACACA GACGAGCTAC ATTGATTGTA TGACCGATCG GAGAAGGTAG 19080 ||||| | || |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACCCC-TCTG GAACCACACA GACGAGCTAC ATTGATTGTA TGACCGATCG GAGAAGGTAG 59 AAACCCTAGC TCTGCAATCG AGGCACCGCC GTAGAACGGT GTTGCGGGCA GCTCATGAGC 19020 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAACCCTAGC TCTGCAATCG AGGCACCGCC GTAGAACGGT GTTGCGGGCA GCTCATGAGC 119 TGTTAATAAT GCTTAGTAAG CTCAGCTTAG ACCTATACAT ACATGTTTGA TATGTACTTG 18960 |||||||||| ||||| TGTTAATAAT GCTTA..... .......... .......... .......... .......... 134 TTTATGTGTA CATATCGATA TGGATATTGT ATTAGCTGCA ATGTATCACA GCCTTGTAGG 18900 .......... .......... .......... .......... .......... .......... 134 TTTTTCTAGA TGAATAAGGG ATTTATTTTG AAATTTTGAA AAATTTTAGC TCTATTTTGA 18840 .......... .......... .......... .......... .......... .......... 134 GTAATCCTTG AGGATTTGCT TATGGATCTG TGAGCTTAGA GTTTTTCTTC CATTTTTCCT 18780 .......... .......... .......... .......... .......... .......... 134 TAATTTCTGG AATCCTGATT TGCTTAATTT CTATTGTTGT TGTTGCTGGT TGTATTTTTT 18720 .......... .......... .......... .......... .......... .......... 134 TGAGTTTTTT TTATGGTTCA TTGTTGTTGG ATTTTGAGGT TCTTTGATTT TCATTTTCTG 18660 .......... .......... .......... .......... .......... .......... 134 GTTACTTATG AAAAAATTGA TTTGGATTAT TTATTTTCAA TTTCTATTTT TGTTCTTAGT 18600 .......... .......... .......... .......... .......... .......... 134 TGTTGTCTTT ACTTTTTTTC TTAAATTTTT TTTTTAGTGC ATTTTGGTTG AATTTTGAGG 18540 .......... .......... .......... .......... .......... .......... 134 TCGGAAAGCT TTTTTTAAAT TATTTTTTTC TAGTTTCTTT TGAGAAAAGA AATTATTTGG 18480 .......... .......... .......... .......... .......... .......... 134 TTTTGTTAAT TGCCATTTTC AGTTTCTTAT ACTTAGTTGT GATTAAGCAA ATTAAATTTT 18420 .......... .......... .......... .......... .......... .......... 134 GATGTGTTTT GGTTGATTCT TTGAGTTCTA AAGCTATTTA GTTTTATTTT TCCAGATTGG 18360 .......... .......... .......... .......... .......... .......... 134 TTTTGAAAAA AATAATTTGA ATTAATACTT TTGCTTTGCG TGTGGATTTA CAAGTTAGGA 18300 .......... .......... .......... .......... .......... .......... 134 GGAAATTGAT TTTACAATGG ACTTGAACTC CAATTGAAGA ACAATTGATG GATCTATCAT 18240 .......... .......... .......... .......... .......... .......... 134 GCTATTCTCA GAAATTTTAG TGTAGTTTTT TATTTTTAAG GCTTTGTTTT TGTGGATTTG 18180 .......... .......... .......... .......... .......... .......... 134 TAGAAGATCT TCAGCTAGAT CAAACTGAGA AATTTTAAAG AATTCCTACA ATTTTTCAGT 18120 .......... .......... .......... .......... .......... .......... 134 AGTTAAATTG TATAACATTG ACCGAGATGA CTGATATCTT TTGATTTATG GATTAAAGTT 18060 .......... .......... .......... .......... .......... .......... 134 CTTTAAATCG TCTATCATAT ACTGTATCTA CCTTTGAATA TATTGGTGCT AAACTTTGAA 18000 .......... .......... .......... .......... .......... .......... 134 ATTGAATTGT ATACATGACT TAATTTGAAG CAACAACGTA TGAGTAGATG CTTTTTTTTT 17940 .......... .......... .......... .......... .......... .......... 134 TGCATTCGTA GAACTCTCCA TGCAAATGGT ATGTGCTATC TTTCCCTTTT ACACCTTAAA 17880 .......... .......... .......... .......... .......... .......... 134 GCTTAAGTAA GTAAATCAAT GAATGTTTGA TGCAGGCTCG TCCCTGATTC AAGAGTACAG 17820 ||||| |||||||||| |||||||||| .......... .......... .......... .....GCTCG TCCCTGATTC AAGAGTACAG 159 TGACAGTTGC TCCTTATTTA TATAAAGCTC TAGAATTGTG GTGGAAGACA ATGCAGGTGA 17760 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||| TGACAGTTGC TCCTTATTTA TATAAAGCTC TAGAATTGTG GTGGAAGACA ATGCAG.... 215 ATATCACTAT TCAAAATATA GACTTATGTC CTACATATGA TGTCATTTTT TTGGGTTGAT 17700 .......... .......... .......... .......... .......... .......... 215 ACAAGCCAGT TAAGAACACA CTACAAACTC ACAGCAAAAT ATGGGAACAC AAAAATCATA 17640 .......... .......... .......... .......... .......... .......... 215 TGGTCTTGGC AGTTTGTTGT GGGATAGAGC CTTAGATAAG ATCTCATCAA ATGTTAGATG 17580 .......... .......... .......... .......... .......... .......... 215 TGAACATAAA TATATCTTTG TTATCAAATT TGTAACACTT TTTTGTCATT GCTTCTCTCC 17520 .......... .......... .......... .......... .......... .......... 215 ACACAATTTC TTTCTGCTTT GAATTAGAAT AATATGATTG TATCCATTTT TGTTTATTGA 17460 .......... .......... .......... .......... .......... .......... 215 CCCTTGGTTG ATCAAATAAG TCAAACAGTC TCTTGTGCCT GCTGCATTTG AAGATACATA 17400 .......... .......... .......... .......... .......... .......... 215 TTTGTGTTTC AGCTCGTTCA CAGGCTTGAA ACTCTTTATT TCTAGTCTAC TTCAGTAGAT 17340 .......... .......... .......... .......... .......... .......... 215 TGCTAGTGGA TGCTGGTGGT TCTCTGATAT TTAAGACCCT CTTTCATGGA AGAGTTTGAA 17280 .......... .......... .......... .......... .......... .......... 215 ATGTATAAAG ATGATCTCTG TAAATAAAAG TGTGTCCTTG TCTGCTAGAG GTAGTCATGG 17220 .......... .......... .......... .......... .......... .......... 215 GAAAATCTAC AAAAGAAATA AACAAAGACA GCACAATGAG AAAATATAAT GACCACAGCT 17160 .......... .......... .......... .......... .......... .......... 215 GAGGAAAAGA AGAAAACTAA GTGTGATCGA CTTTTTCAAT TGTAGTTTAT TACATTATTT 17100 .......... .......... .......... .......... .......... .......... 215 TGTTCTTTGG TACGATTGAC TTTCATAATA TAAGTTAACA TAAACTCCTA ATCTTCCAAC 17040 .......... .......... .......... .......... .......... .......... 215 TTGTTCTCTA CTTCTTCTCT TTGCTATTTC AGTTTATTCA TAAGTGAATG TTATAATTGA 16980 .......... .......... .......... .......... .......... .......... 215 AATAATATTA TGACTTAAAG ATTGCATCAA TAGTGTTGGT TATGCTCACT TCTGTTTGTT 16920 .......... .......... .......... .......... .......... .......... 215 GAAGTTACTT TCTGCTTAGA AATTAGTAGC TTAAACAGGC ATAACTTGCG TGTATTTAAC 16860 .......... .......... .......... .......... .......... .......... 215 TGACTAAGAA GGCTCCAAGT TCAAGTCACT ATACCAGTTA ATAATAGTTG CTTGATTTGT 16800 .......... .......... .......... .......... .......... .......... 215 GATCTTCCTA AATCTCATTA GTTCACCTGA TGGCATGTCA GAGTCCAATC AGGCACTAGT 16740 .......... .......... .......... .......... .......... .......... 215 TATCTTCTTA CACTGGTACC TGGACACATA TATTTGCCGA AACTTCAACG TTCTAAACTT 16680 .......... .......... .......... .......... .......... .......... 215 TCTGGGGAAT AATGTCATTA AGGCCCTAAA GCTTTGTCTA TGTAATTTGT GTGTCTTTTT 16620 .......... .......... .......... .......... .......... .......... 215 TTTTTTTTTT TTTAATAATT TTGTTTTCTT GTATTGCATA TACATCCTTT AATTTTTATC 16560 .......... .......... .......... .......... .......... .......... 215 TTCATCAGGC CCTTTACTAG AACTTTTTTT GGATGTGTGT TGTGCTTAAA GCCCAACCTT 16500 .......... .......... .......... .......... .......... .......... 215 TGAATCTTCC TCTGCCTTTG ACAACACTGC TGAAGAATGA TGTTTGTGCT GTTTCATCAA 16440 .......... .......... .......... .......... .......... .......... 215 GTTCTTGGAT CCTGCATATT GAGACTTATT TGAAAGTTCC CTACTCTTTG GTCCATGTTG 16380 .......... .......... .......... .......... .......... .......... 215 AGCATCTGTT TTTGCGGAGT CTTTTTTTAA AAACTCTTTT CTGGGGGTCA TTCTTACCTT 16320 .......... .......... .......... .......... .......... .......... 215 TGACTATGAA AAGTTAAAGA TGATGCAATG TTGTCTCTGC AGTTGTAGCT CTGACAATTG 16260 |||||||| |||||||||| .......... .......... .......... .......... ..TTGTAGCT CTGACAATTG 233 GCATATCACC ACCTGGGTCA ATGAGGAATG CAACTATGGC AACTGGATCT TCTAATCTTA 16200 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCATATCACC ACCTGGGTCA ATGAGGAATG CAACTATGGC AACTGGATCT TCTAATCTTA 293 AAGTGCCTAC TATGCGAATC ACAAGAGCAC GGGCAAAAAC CTTGGGTTCA TCAGGAGGAC 16140 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGTGCCTAC TATGCGAATC ACAAGAGCAC GGGCAAAAAC CTTGGGTTCA TCAGGAGGAC 353 TACCACCTCT ACACCCATCT GTCAGACAGG ATAAGAAACA GGGACTTGTA ACACAAGGAA 16080 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TACCACCTCT ACACCCATCT GTCAGACAGG ATAAGAAACA GGGACTTGTA ACACAAGGAA 413 CAAAATCCAA AAGACCAGCC CCAGATGAGA ACAAACCAGC TAATTCTTCC AGTACTGCTT 16020 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAAATCCAA AAGACCAGCC CCAGATGAGA ACAAACCAGC TAATTCTTCC AGTACTGCTT 473 CTCAACAGCC TAAGCGAAGG GCTGTTCTCA GGGATGTCAC TAATGTGCTT TGTGAAAATC 15960 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCAACAGCC TAAGCGAAGG GCTGTTCTCA GGGATGTCAC TAATGTGCTT TGTGAAAATC 533 CGTACATGAA TTGCATCAAT GGAAGCAAAT TTCAGGTGAG CTTCAATGGA TGTGTTATAT 15900 |||||||||| |||||||||| |||||||||| ||||| CGTACATGAA TTGCATCAAT GGAAGCAAAT TTCAG..... .......... .......... 568 CATATTTGCT CTTTGGAAAT GAAATCATTC TGCTAAACAT AATTATTGGT TATTGAACTA 15840 .......... .......... .......... .......... .......... .......... 568 ATGTCTTTGT TTCAAAAGAT GGAGATTCAG TGCTAAATCT TTTTCTTTGT TTCAAAAACT 15780 .......... .......... .......... .......... .......... .......... 568 TATCAACTTC TGGCCAATGA TGTCAACTTG TCCTATGGTG ATAGGTTAAG AAATTCTCTG 15720 |||||| |||||||||| .......... .......... .......... .......... ....GTTAAG AAATTCTCTG 584 ATAAGAGGAA TTCAAAGGTG ACACCTGCTC TTTTGGTGAA AAAGCCTGAG CTTGAAGATA 15660 |||||||||| |||||||||| |||||||||| |||||||||| |||| ||||| |||||||||| ATAAGAGGAA TTCAAAGGTG ACACCTGCTC TTTTGGTGAA AAAG-CTGAG CTTGAAGATA 643 GAAAAGAGAG TGTGATTGAA GAAGCAAAAA TGGTAAAGGT TGAGGAATCA CAAGAACACT 15600 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAAAGAGAG TGTGATTGAA GAAGCAAAAA TGGTAAAGGT TGAGGAATCA CAAGAACACT 703 GTTCACAAGC ACACTTCAAG GACCACCCAT TTACTCAGCC AAGTGAATAT ATCACCGCCG 15540 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTCACAAGC ACACTTCAAG GACCACCCAT TTACTCAGCC AAGTGAATAT ATCACCGCCG 763 CTCAAAGTGG TTTAGTTGAT CTTATGCCTG TGAATAGGAG TTCATGTAAT GACATTACCC 15480 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCAAAGTGG TTTAGTTGAT CTTATGCCTG TGAATAGGAG TTCATGTAAT GACATTACCC 823 TCCAGACTAC AACACCAAAA GGTATGCTAT TGTGTGCTAT TATGCAAGAT TTGAAAGCCT 15420 |||||||||| |||||||||| | TCCAGACTAC AACACCAAAA G......... .......... .......... .......... 844 TGGAATTTGT TGATTTCATT CCCTCTCTTT AGACATAGTT TGAAGTGCAA CTACCATGAC 15360 .......... .......... .......... .......... .......... .......... 844 TGAGCTATGT CTGCTCCTTC AAATTTCAAA AAATCTGTGG TAATTGCTGC CTGCTCATCA 15300 .......... .......... .......... .......... .......... .......... 844 GGAGAGACCA GCAACCAAGA TACTTGATAA TCATAACATT CCTGAAAACT TAATATTTCT 15240 .......... .......... .......... .......... .......... .......... 844 TAAGTGCTGT GCACGATGAA ACTGTGAACT AGTTTTTATT TATATTCAAC GCCTTTGAAT 15180 .......... .......... .......... .......... .......... .......... 844 TTGATCCTTT TATGAAATGC TCTATTCAAA CCACGTATAA TTCTTTGTGA GCGCGACAAG 15120 .......... .......... .......... .......... .......... .......... 844 CATGTGTGTC CTTTACTGGC ATATAGTTCT AGTTAAAATT TCAAAGTGCA AAGCTACTTA 15060 .......... .......... .......... .......... .......... .......... 844 TGGCCCTTTG TCCAACTCAG ATATATCATT ATTACAATAG GCATCCATTT GAATTCGATG 15000 .......... .......... .......... .......... .......... .......... 844 TTATAATTCC AAGCACAACC TCTAGAATAG CAATTTACAA CTTTTTTGCG GTTACTAAAG 14940 .......... .......... .......... .......... .......... .......... 844 TTCTCTACTG TATATGCAGC AAGAAGAAAG TTTATAAAGA CTTCATTCAC TGCATTTTGC 14880 .......... .......... .......... .......... .......... .......... 844 TCATTTTTTG TTTTGCATTC TAGTAAGTCT CAATTCAGAA AACTGTTTGA AGAAAAGCAG 14820 .......... .......... .......... .......... .......... .......... 844 TGTAAAATTT CTATTTTTCA TAAAACCTCA AAAGAGAGCT CTTGCTCACT GAAATGTGAA 14760 .......... .......... .......... .......... .......... .......... 844 GTAACTGACT TGTAGAACCA TCATAAGAAA TGGTAACCCT CGAATAACTG GAAGTATAGA 14700 .......... .......... .......... .......... .......... .......... 844 GACAATGTAA TATATGCAAC AGAAAGAGCG AAGAAACCAA TTGAGTGCAT AGTTCCTCAT 14640 .......... .......... .......... .......... .......... .......... 844 GGGTGATATG TCTTTGTGGT TCTACGGAGA TGGTTATTTT ATTTCTCCAA TACAAAGGGC 14580 .......... .......... .......... .......... .......... .......... 844 GTTTTTGTGT CCATTTTGCA AATGGATGGA CTGAAAAACC TTTTCCCAAA AAGGTAAAAA 14520 .......... .......... .......... .......... .......... .......... 844 GCCAAAACTG TTTGTAGGAG GAAATCTTAT TTAATCTGTT TGATCTTCTG GCATTGCCTG 14460 .......... .......... .......... .......... .......... .......... 844 CAAAATTTAA TCATCATTTT AACATTGCAT GAAAGCATTA TTAGTTTTGA AAGGAAATCT 14400 .......... .......... .......... .......... .......... .......... 844 TCCTATTGTC ATGTTCTTTT CTAGAAGGTG CTTATTTGTT TCTCTTCCAT CATGCAGATG 14340 ||| .......... .......... .......... .......... .......... .......ATG 847 AAAGCAAGGT TTGCTTGAAA CAGGAAGGCT CCAATTCGCT TAGTATTGCA GATATAGATT 14280 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAGCAAGGT TTGCTTGAAA CAGGAAGGCT CCAATTCGCT TAGTATTGCA GATATAGATT 907 CAAAACACAA GGATCCACTA ATGTGTAGTC TGTATGCTCC TGATATATAT AACAATTTGC 14220 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAAACACAA GGATCCACTA ATGTGTAGTC TGTATGCTCC TGATATATAT AACAATTTGC 967 AAGCCATGGA GGTTAGTATG ACTAGTGCAT TCCTAACTAC TTAAAAAATT ACTCATGCAC 14160 |||||||||| | AAGCCATGGA G......... .......... .......... .......... .......... 978 TGTTGAATTG TTGATAAGTC TAGTGATAGC ACTAGGCATC CAAAACCATC TAAACAATAT 14100 .......... .......... .......... .......... .......... .......... 978 CAAGTTTAAT GTTGCCTTTA GTTGTTAATT AAACAAATAA TATCATGGAT AATTGCAATG 14040 .......... .......... .......... .......... .......... .......... 978 AAATAGTTTA AATACTTCTG AACAAGTTTA AAAGTGCCCT TCCTTTTCTT TGTTAACATA 13980 .......... .......... .......... .......... .......... .......... 978 AGACTTTATG TTTCTCAATT ACTAAATGAC AAATTCATCT CATCAACAGC TTGACCGGCG 13920 | |||||||||| .......... .......... .......... .......... .........C TTGACCGGCG 989 GCCTTCCTTT AATTATATGG AAAAGCTTCA GCGGGACATT AACAAGGGTA TGCGAAGTAT 13860 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCCTTCCTTT AATTATATGG AAAAGCTTCA GCGGGACATT AACAAGGGTA TGCGAAGTAT 1049 TCTTATTGAT TGGCTTGTGG AGGTCAGTTT GCTTTTACTT GGATGTTTTA ACGCTGCTTA 13800 |||||||||| |||||||||| || TCTTATTGAT TGGCTTGTGG AG........ .......... .......... .......... 1071 ATAATATGAG ATATTATCTT AAAGAGTATG TTGTGGTTCT TTATAAACAA AATCTTCACA 13740 .......... .......... .......... .......... .......... .......... 1071 TATAGACCTA AGTTGTGATA GTAGAAAACC TTTTTGTTGA CTACCTTTTC TATGATCATT 13680 .......... .......... .......... .......... .......... .......... 1071 GGATGAACTG TTCCTTTTTT TGAAGGCATC ACCAACTGAA ACTTTTTGCT TCATATTCAA 13620 .......... .......... .......... .......... .......... .......... 1071 GCATTATTGT CTTGTTTAAT TTTTATGGTT ATCCTCCCTG GAAGATCACA TATGTTTTTT 13560 .......... .......... .......... .......... .......... .......... 1071 CCTTGAAAGC ATTTCATCAA ATGTTAGTTC TAATGGGAAA TTTCATATTT AGTCTACAGT 13500 .......... .......... .......... .......... .......... .......... 1071 CATGGTTTCT GTCTAAATGA CCAAATGACA CTTTAGCCTA TTCATCTCTC CTTTTTCATT 13440 .......... .......... .......... .......... .......... .......... 1071 TTGGAATATC ATAAGCAGAT ATTATGATAC ATTCATGATT TATATTTCTC TATTAAGAAA 13380 .......... .......... .......... .......... .......... .......... 1071 ATAAGTCTGT TAACTATGAT GAGAGGTGCA ATACTTTAAT GGTGTTATTC TCTTACCAAT 13320 .......... .......... .......... .......... .......... .......... 1071 TATTATTCAG TATTTTATCC TGGGTAAAAT AATTCTTAAG TTCCCTCATA AGTTATGCAT 13260 .......... .......... .......... .......... .......... .......... 1071 GTAATATTTA TGCAAGATAT GAAAATAGAA TGAAACATTC ATCAGTAGTC GGGAACTTAT 13200 .......... .......... .......... .......... .......... .......... 1071 TGCTTGAATT ATTTTTGTTT AGTGGAAATC AAAAGAGCCT TTACATTTCC GCCATTGATT 13140 .......... .......... .......... .......... .......... .......... 1071 ATGCATATTG ATAATGGCAC TGGCTTATGG AATTCAGACT TACTTTTGAT AAGCTCTTTT 13080 .......... .......... .......... .......... .......... .......... 1071 CCTGCTTATG AAGTATTGGA TATGCTTATC TTGCATGACG GTGAAAATTC TATCCGTTGA 13020 .......... .......... .......... .......... .......... .......... 1071 CCATCATTTT GTTCTCTCCC TTGCAGGTAT CTGAAGAATA TAGGCTGGTT CCGGACACTC 12960 |||| |||||||||| |||||||||| |||||||||| .......... .......... ......GTAT CTGAAGAATA TAGGCTGGTT CCGGACACTC 1105 TTTACCTGAC TGTACATCTT ATTGATAGGT TCCTTTCTGA GCATTACATT GAAAAACAAA 12900 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTACCTGAC TGTACATCTT ATTGATAGGT TCCTTTCTGA GCATTACATT GAAAAACAAA 1165 AACTGCAGCT GCTTGGAGTT ACCTGCATGC TAATTGCTTC GTAAGTAAAT CATTTTTGGA 12840 |||||||||| |||||||||| |||||||||| |||||||||| AACTGCAGCT GCTTGGAGTT ACCTGCATGC TAATTGCTTC .......... .......... 1205 TATTCATACT CAAGGATGTC AGGTTATAGG GTAGACTAAA CAGTTTTTAC ATTTATAAAC 12780 .......... .......... .......... .......... .......... .......... 1205 TTGTAGATCA CAAAGATTTT CCTTTTTTTA CCGTGGTAGC TTGTGGGAAC TAGAGCCATT 12720 .......... .......... .......... .......... .......... .......... 1205 TAACTAACAT TCCCCTTTTT AAAAATTTGT ATGTGCATGT GCTATTCAAC ACGGTAATAT 12660 .......... .......... .......... .......... .......... .......... 1205 ACTTTGCCCA ATTTTTAGAA TTATTTGTAG TTTCAGTAAA GAGAAACTAT ATGTACTTCC 12600 .......... .......... .......... .......... .......... .......... 1205 ATCTGCATCT TTTCATTGTA ATTTTTCTGC AGTATGTGAT CTTTTATTTT CTTTTTTGCT 12540 .......... .......... .......... .......... .......... .......... 1205 TGCAGCAAAT ATGAAGAAAT TTGTGCACCT CGTGTGGAAG AATTTTGCTT TATTACAGAC 12480 ||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .....CAAAT ATGAAGAAAT TTGTGCACCT CGTGTGGAAG AATTTTGCTT TATTACAGAC 1260 AACACTTACT CGAAAGAAGA GGTATGCTCA TTCCAATGCT GATCTAGTCG TGATTTTCTT 12420 |||||||||| |||||||||| | AACACTTACT CGAAAGAAGA G......... .......... .......... .......... 1281 TTATGTGGAG AAAGAGGTAC TTGGAGATAT GTTATGTGAT AAAGAGCAAT TGAATAACTT 12360 .......... .......... .......... .......... .......... .......... 1281 TAGTTTCAAT TAGTGTTAGA AGCATGATGA GTTGCTTTAG ATTCTTTAAA TTCATTTCTC 12300 .......... .......... .......... .......... .......... .......... 1281 CTGGTTGTAT TTGTCGTTTG TACCCATCCT TGATGTTTGG TCACTCAATA TTGAGCTCCC 12240 .......... .......... .......... .......... .......... .......... 1281 GTGCTATGTG ATACTCTCTA GATGTCTAGT ACTGGGCATT TAAGGAGTGT TAGAACCCAC 12180 .......... .......... .......... .......... .......... .......... 1281 AGTGGTTGAG AGTAAAGGTT GTAGCTCTTA TATGCTTTTC AACCATCCTC AGTTCATGAG 12120 .......... .......... .......... .......... .......... .......... 1281 CGAACTTTGA AGGTCAAGCC CAAGGTCTGT TATAACATTT TGTACCTTTA TGCATTCAAC 12060 .......... .......... .......... .......... .......... .......... 1281 TAGTCTTTCA GAATTTGTCC TTGTAAACTG ATAACTGTAT AAGACCCACA CCTTGCATTC 12000 .......... .......... .......... .......... .......... .......... 1281 CTCTGCTAGT TCTTTTGACT GTTTTTGCTT GTCCTAGCTA CATTACTTTA CCCCCTTGTG 11940 .......... .......... .......... .......... .......... .......... 1281 TTTATCTTCT TAAAAGCGAA AATCTAGATT GCCTCATCTA GCTCTGAGCT TTCCTTTCTC 11880 .......... .......... .......... .......... .......... .......... 1281 TTTTATGATA TCTTGGATGC ATACTTTTTT CCTACTTGAG TAATGATCTG AACATTTCCC 11820 .......... .......... .......... .......... .......... .......... 1281 AAATGTTTTC CTTTGTCTTC TATATACGAC TTGAAGTTCC CTGTGGATGT GAAAAGGCTA 11760 .......... .......... .......... .......... .......... .......... 1281 ATTACTAATT GCATATCCAT TGTCAGGTAG TAAGAATGGA AAGTCTGGTT CTGAATTTTT 11700 |||| |||||||||| |||||||||| |||||||||| .......... .......... ......GTAG TAAGAATGGA AAGTCTGGTT CTGAATTTTT 1315 TGGGCTTTCA ACTTGCTGCT CCGACCACCA AAAAGTTCCT GAGGTACCTG TAATTAGCAA 11640 |||||||||| |||||||||| |||||||||| |||||||||| ||| TGGGCTTTCA ACTTGCTGCT CCGACCACCA AAAAGTTCCT GAG....... .......... 1358 TATATGCAAA TTTAATCATG TTACTTGTGA GAGTAGGCTC CTTATTTGTG CCATTGTCCT 11580 .......... .......... .......... .......... .......... .......... 1358 TTGTTTTTAG GAGATTCGTT CAAGCATCAC AAGCTTCTTA TGAGGTAGAT GAGATATCAT 11520 |||||||||| |||||||||| |||||||||| |||| .......... GAGATTCGTT CAAGCATCAC AAGCTTCTTA TGAG...... .......... 1392 TCTTCTTTTG GTTTGGGTCC TAGAAAATGA AGCTTATATG ACAAATTAAA TTTCTCCAAC 11460 .......... .......... .......... .......... .......... .......... 1392 CTACAGGTTC CCTCTGTTGA ACTGGAATTC ATGGCAAACT ATTTAGCAGA GTTAACACTA 11400 |||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ......GTTC CCTCTGTTGA ACTGGAATTC ATGGCAAACT ATTTAGCAGA GTTAACACTA 1446 GCTGAATATA GTTTTCTCAA GTTTCTTCCA TCTGTTACTG CTGCATCAGC TGTATTTCTA 11340 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTGAATATA GTTTTCTCAA GTTTCTTCCA TCTGTTACTG CTGCATCAGC TGTATTTCTA 1506 GCCAGATGGA CACTTGATCA ATCTAACCAC CCATGGGTAT GCAACTTTTT TGCACCTTGA 11280 |||||||||| |||||||||| |||||||||| |||||| GCCAGATGGA CACTTGATCA ATCTAACCAC CCATGG.... .......... .......... 1542 TCCTGTCATC TTTTTTTGCA ATTGAATGCA ACCACAAAAT AACTCCTGAA ATGTCTTGCA 11220 .......... .......... .......... .......... .......... .......... 1542 GAATTCAACT TTGGAGCACT ACACTACATA TAAGGCGTCA GATCTGAAAA CTACAGTTCT 11160 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .AATTCAACT TTGGAGCACT ACACTACATA TAAGGCGTCA GATCTGAAAA CTACAGTTCT 1601 TTTGCTGCAA GATTTACAGA TGAACACCAG TGGAAGCACT CTGAATGCCA TCCGTGAAAA 11100 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTGCTGCAA GATTTACAGA TGAACACCAG TGGAAGCACT CTGAATGCCA TCCGTGAAAA 1661 GTATAAACAA CCAAAGGTAA GAAACTCTAT CACAACCACA TGTATCAGCT GTTTATCATT 11040 |||||||||| |||||| GTATAAACAA CCAAAG.... .......... .......... .......... .......... 1677 GCACTCTGTA TACTGAAGCT TCCATTTGAA TTGACAGTTC AAGTCCGTGG CAACTTTATC 10980 ||| |||||||||| |||||||||| .......... .......... .......... .......TTC AAGTCCGTGG CAACTTTATC 1700 GTCTCCAAAA CCAGTCCAAT CACTGTTCTA GGAAATGCTG ATTTTAAGTC TCGGTGGCCA 10920 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTCTCCAAAA CCAGTCCAAT CACTGTTCTA GGAAATGCTG ATTTTAAGTC TCGGTGGCCA 1760 ATCCATGTTT GGCAGATCCA GTGTCACTTT TTCAAGCGAA GGAACATTAA TCTTTAACAT 10860 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCCATGTTT GGCAGATCCA GTGTCACTTT TTCAAGCGAA GGAACATTAA TCTTTAACAT 1820 ACAATAATTC ATCCTTCCTG GAAAGAGACA CATTCTTTTC AACCCTCTTT CGAATTTTAA 10800 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACAATAATTC ATCCTTCCTG GAAAGAGACA CATTCTTTTC AACCCTCTTT CGAATTTTAA 1880 CCACATCTAT CATCCTACCA TGGCCCGTCA GATGATACAG AAAGCTGTAG ATTTGAATGA 10740 |||||||||| |||||||||| |||||||||| || |||||| |||||||||| |||||||||| CCACATCTAT CATCCTACCA TGGCCCGTCA GAGTATACAG AAAGCTGTAG ATTTGAATGA 1940 AGTGGATGCA CTAAGTTAAA AAGTAATGGC AATATGTAAG TAACTTCACA GCACCTGGTT 10680 ||||| ||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTGGTAGCA CTAAGTTAAA AAGTAATGGC AATATGTAAG TAACTTCACA GCACCTGGTT 2000 AGCTTCTTGC TATCATGTAT ATGAAGCTGT TTGAGAGCTC TTCTTGTTAA AATGGTTCCA 10620 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCTTCTTGC TATCATGTAT ATGAAGCTGT TTGAGAGCTC TTCTTGTTAA AATGGTTCCA 2060 AATTTGACGT TTCTATTCAT TAAGCGCAAT AAATCCTTTT CCATTCTGGA CGAGATACAA 10560 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATTTGACGT TTCTATTCAT TAAGCGCAAT AAATCCTTTT CCATTCTGGA CGAGATACAA 2120 ATTGTTTAAG TCTATCAAGC TTACATAACT TT 10528 |||||||||| |||||||||| || | || || || ATTGTTTAAG TCTATCAAGC TT-CGTAGCT TT 2151 hqPGS_C06HBa0046G10.1-5-_SGN-U326225+ (19139 19005,17844 17764,16277 15925,15735 15459,14342 14209,13930 13838,12993 12860,12534 12459,11733 11657,11569 11536,11453 11304,11218 11084,11002 10528) Total number of EST alignments reported: 4 ________________________________________________________________________________ Predicted gene locations (4) in segment 1 to 19191: PGL 1 (- strand): 2735 1926 AGS-1 (2735 1926) SCR (e 0.964) Exon 1 2735 1926 ( 810 n); score: 0.964 PGS (2735 1926) SGN-U345587- 3-phase translation of AGS-1 (-strand): . . . . . . 2735 CTGTTTGAGTCTGAATTGCCTCTTCCTGAGTCTACTGACTCAGATTTCAGTGATTTCTTC L F E S E L P L P E S T D S D F S D F F C L S L N C L F L S L L T Q I S V I S S V - V - I A S S - V Y - L R F Q - F L . . . . . . 2675 GGAAGCTTACTCAGAAAATGCTTCCACATGGTGCTTTTCACAAACTTTTAACACAAAAAC G S L L R K C F H M V L F T N F - H K N E A Y S E N A S T W C F S Q T F N T K T R K L T Q K M L P H G A F H K L L T Q K . . . . . . 2615 AGACTCAAAACAGATAAAAGAGGGTGAAAAAACACTCAAATCAAGATATTACTGGTAAAG R L K T D K R G - K N T Q I K I L L V K D S K Q I K E G E K T L K S R Y Y W - R Q T Q N R - K R V K K H S N Q D I T G K . . . . . . 2555 GGCAACAACCCTAGAGCTGTAATACACAACCAAGATCTAAACCAAAACCCCATTGGCTAA G N N P R A V I H N Q D L N Q N P I G - A T T L E L - Y T T K I - T K T P L A K G Q Q P - S C N T Q P R S K P K P H W L . . . . . . 2495 AAAATCTGCAAACTTTAAGCTAAACCACAAAATGGGGGTGCCATTATCTTCAGCAAGAAG K I C K L - A K P Q N G G A I I F S K K K S A N F K L N H K M G V P L S S A R R K N L Q T L S - T T K W G C H Y L Q Q E . . . . . . 2435 AAAGAAAAATCAAATCTTTCCTCAAACTAACTTAAAGGGTGGTTCAGATCTTGATTTACA K E K S N L S S N - L K G W F R S - F T K K N Q I F P Q T N L K G G S D L D L Q E R K I K S F L K L T - R V V Q I L I Y . . . . . . 2375 AATAGGGAAAAGATTGAAAAAAAATGCAAGAATCATGCAAAGCTGAAGCCTTTTTTGCTC N R E K I E K K C K N H A K L K P F L L I G K R L K K N A R I M Q S - S L F C S K - G K D - K K M Q E S C K A E A F F A . . . . . . 2315 AATTTACAACCTTGGATTCTTTAAATAAAAAGAGAGAGAGCCCAGATCTCATACACATTC N L Q P W I L - I K R E R A Q I S Y T F I Y N L G F F K - K E R E P R S H T H S Q F T T L D S L N K K R E S P D L I H I . . . . . . 2255 ATTATAACTATTTATATATACATAACATGAAAAAGATTCAGATATATTGCAGAGAAGGGG I I T I Y I Y I T - K R F R Y I A E K G L - L F I Y T - H E K D S D I L Q R R G H Y N Y L Y I H N M K K I Q I Y C R E G . . . . . . 2195 GTAGGGAGGGTGTCAGGATGTGGGTAGGTTGGGTGGGTGGTGGGTTGAAGAGGGGAGAAA V G R V S G C G - V G W V V G - R G E K - G G C Q D V G R L G G W W V E E G R K G R E G V R M W V G W V G G G L K R G E . . . . . . 2135 GAAGGAGATTCAGATGCTGATAACAAGGCTAAAGAAAACAAAAAATGTCATTATTCATCA E G D S D A D N K A K E N K K C H Y S S K E I Q M L I T R L K K T K N V I I H H R R R F R C - - Q G - R K Q K M S L F I . . . . . . 2075 TTCAATTTCTTCATGCACTAGTACTATGTACATACATTTTATACATAAACATAAAAACAA F N F F M H - Y Y V H T F Y T - T - K Q S I S S C T S T M Y I H F I H K H K N N I Q F L H A L V L C T Y I L Y I N I K T . . . . . . 2015 CAAGTGAATAAAGCTTTCTTCTTCATTAGGAAATTTTTGGGTTTGAAGGGGGTGGGGTAA Q V N K A F F F I R K F L G L K G V G - K - I K L S S S L G N F W V - R G W G K T S E - S F L L H - E I F G F E G G G V . . . 1955 GTGAGCTTAATTATGAACCTTGGCATGGAT V S L I M N L G M D - A - L - T L A W S E L N Y E P W H G Maximal non-overlapping open reading frames (>= 64 codons): >C06HBa0046G10.1-5-_PGL-1_AGS-1_PPS_1 (2358 2116) (frame '0'; 240 bp, 80 residues) 1 KKMQESCKAE AFFAQFTTLD SLNKKRESPD LIHIHYNYLY IHNMKKIQIY CREGGREGVR 61 MWVGWVGGGL KRGERRRFRC - 3-phase translation of AGS-1 (+strand): . . . . . . 1926 ATCCATGCCAAGGTTCATAATTAAGCTCACTTACCCCACCCCCTTCAAACCCAAAAATTT I H A K V H N - A H L P H P L Q T Q K F S M P R F I I K L T Y P T P F K P K N F P C Q G S - L S S L T P P P S N P K I . . . . . . 1986 CCTAATGAAGAAGAAAGCTTTATTCACTTGTTGTTTTTATGTTTATGTATAAAATGTATG P N E E E S F I H L L F L C L C I K C M L M K K K A L F T C C F Y V Y V - N V C S - - R R K L Y S L V V F M F M Y K M Y . . . . . . 2046 TACATAGTACTAGTGCATGAAGAAATTGAATGATGAATAATGACATTTTTTGTTTTCTTT Y I V L V H E E I E - - I M T F F V F F T - Y - C M K K L N D E - - H F L F S L V H S T S A - R N - M M N N D I F C F L . . . . . . 2106 AGCCTTGTTATCAGCATCTGAATCTCCTTCTTTCTCCCCTCTTCAACCCACCACCCACCC S L V I S I - I S F F L P S S T H H P P A L L S A S E S P S F S P L Q P T T H P - P C Y Q H L N L L L S P L F N P P P T . . . . . . 2166 AACCTACCCACATCCTGACACCCTCCCTACCCCCTTCTCTGCAATATATCTGAATCTTTT N L P T S - H P P Y P L L C N I S E S F T Y P H P D T L P T P F S A I Y L N L F Q P T H I L T P S L P P S L Q Y I - I F . . . . . . 2226 TCATGTTATGTATATATAAATAGTTATAATGAATGTGTATGAGATCTGGGCTCTCTCTCT S C Y V Y I N S Y N E C V - D L G S L S H V M Y I - I V I M N V Y E I W A L S L F M L C I Y K - L - - M C M R S G L S L . . . . . . 2286 TTTTATTTAAAGAATCCAAGGTTGTAAATTGAGCAAAAAAGGCTTCAGCTTTGCATGATT F Y L K N P R L - I E Q K R L Q L C M I F I - R I Q G C K L S K K G F S F A - F F L F K E S K V V N - A K K A S A L H D . . . . . . 2346 CTTGCATTTTTTTTCAATCTTTTCCCTATTTGTAAATCAAGATCTGAACCACCCTTTAAG L A F F F N L F P I C K S R S E P P F K L H F F S I F S L F V N Q D L N H P L S S C I F F Q S F P Y L - I K I - T T L - . . . . . . 2406 TTAGTTTGAGGAAAGATTTGATTTTTCTTTCTTCTTGCTGAAGATAATGGCACCCCCATT L V - G K I - F F F L L A E D N G T P I - F E E R F D F S F F L L K I M A P P F V S L R K D L I F L S S C - R - W H P H . . . . . . 2466 TTGTGGTTTAGCTTAAAGTTTGCAGATTTTTTAGCCAATGGGGTTTTGGTTTAGATCTTG L W F S L K F A D F L A N G V L V - I L C G L A - S L Q I F - P M G F W F R S W F V V - L K V C R F F S Q W G F G L D L . . . . . . 2526 GTTGTGTATTACAGCTCTAGGGTTGTTGCCCTTTACCAGTAATATCTTGATTTGAGTGTT V V Y Y S S R V V A L Y Q - Y L D L S V L C I T A L G L L P F T S N I L I - V F G C V L Q L - G C C P L P V I S - F E C . . . . . . 2586 TTTTCACCCTCTTTTATCTGTTTTGAGTCTGTTTTTGTGTTAAAAGTTTGTGAAAAGCAC F S P S F I C F E S V F V L K V C E K H F H P L L S V L S L F L C - K F V K S T F F T L F Y L F - V C F C V K S L - K A . . . . . . 2646 CATGTGGAAGCATTTTCTGAGTAAGCTTCCGAAGAAATCACTGAAATCTGAGTCAGTAGA H V E A F S E - A S E E I T E I - V S R M W K H F L S K L P K K S L K S E S V D P C G S I F - V S F R R N H - N L S Q - . . . 2706 CTCAGGAAGAGGCAATTCAGACTCAAACAG L R K R Q F R L K Q S G R G N S D S N T Q E E A I Q T Q T Maximal non-overlapping open reading frames (>= 64 codons): none PGL 2 (+ strand): 3648 5828 AGS-1 (3648 3783,5282 5828) SCR (e 1.000 d 0.998 a 0.795,e 0.998) Exon 1 3648 3783 ( 136 n); score: 1.000 Intron 1 3784 5281 (1498 n); Pd: 0.998 Pa: 0.795 Exon 2 5282 5828 ( 547 n); score: 0.998 PGS (3648 3783,5282 5828) SGN-U330738+ 3-phase translation of AGS-1 (+strand): . . . . . . 3648 AAGCACCCAAAAGGAGGTGATGTTTTTGAGTGAGCTGGAAGAAATTTTGGAAGTTATTAA K H P K G G D V F E - A G R N F G S Y - S T Q K E V M F L S E L E E I L E V I N A P K R R - C F - V S W K K F W K L L . . . . . . 3708 CATGGCTGAGTTCCAAAAAGTGATGGTTCCCTTGTTCTGGCGGATCGGTTGCTGCATCAA H G - V P K S D G S L V L A D R L L H Q M A E F Q K V M V P L F W R I G C C I N T W L S S K K - W F P C S G G S V A A S . . : . . . . 3768 TAGTTACCATTTTCAG : GTTGCTGAAAGGGCTCTCTTCCTTTGGAATAATGACCAAATTGT - L P F S : G C - K G S L P L E - - P N C S Y H F Q : V A E R A L F L W N N D Q I V I V T I F R : L L K G L S S F G I M T K L . . . . . . 5326 CAATTTGATTGCACATAACCGGCACGTGATTCTCCCGATTATATTCCCAGCTGTGGAAAG Q F D C T - P A R D S P D Y I P S C G K N L I A H N R H V I L P I I F P A V E S S I - L H I T G T - F S R L Y S Q L W K . . . . . . 5386 CAATACTCAGAACCACTGGAATCATGCTGTGCAGAACTTGAGTCTAAATGTAAGAAGGAT Q Y S E P L E S C C A E L E S K C K K D N T Q N H W N H A V Q N L S L N V R R M A I L R T T G I M L C R T - V - M - E G . . . . . . 5446 GTTCTCCGAAATGGATGATGTACTTTTCCTTGCTTGTCATTCTCATTACAAGGAAGAACA V L R N G - C T F P C L S F S L Q G R T F S E M D D V L F L A C H S H Y K E E Q C S P K W M M Y F S L L V I L I T R K N . . . . . . 5506 GGAGAAAATAGACTTGGAATCTGAAAAACGGAAGGAAGCATGGGAACAGCTGGAGACTGC G E N R L G I - K T E G S M G T A G D C E K I D L E S E K R K E A W E Q L E T A R R K - T W N L K N G R K H G N S W R L . . . . . . 5566 AGCTAGTCTACGTCCACCTGTAGCTGGAAACATTGCTGTCCTGGTAACGCCTTTAGCAAC S - S T S T C S W K H C C P G N A F S N A S L R P P V A G N I A V L V T P L A T Q L V Y V H L - L E T L L S W - R L - Q . . . . . . 5626 TTCAATCACTTGCTAAGAGGTGATGACTCCACTCTATCCTTGTCCCCGTGTTTTTCTGTG F N H L L R G D D S T L S L S P C F S V S I T C - E V M T P L Y P C P R V F L C L Q S L A K R - - L H S I L V P V F F C . . . . . . 5686 TATGTTCCACGCAATCTAGGAATCATGGATGGAAAATGGCTGTTGTCTGGAGCAGGTTTT Y V P R N L G I M D G K W L L S G A G F M F H A I - E S W M E N G C C L E Q V F V C S T Q S R N H G W K M A V V W S R F . . . . . . 5746 TGAAGATCAACCCGATTAACAGCCTTATCTCTGTTGTAACCTTAGTCCTGCAACTGTGTT - R S T R L T A L S L L - P - S C N C V E D Q P D - Q P Y L C C N L S P A T V L L K I N P I N S L I S V V T L V L Q L C . . . 5806 GAGAGCGCGAATGGGGGGGGGGG E S A N G G G R A R M G G G - E R E W G G G Maximal non-overlapping open reading frames (>= 64 codons): >C06HBa0046G10.1-5+_PGL-2_AGS-1_PPS_1 (3649 3783,5282 5641) (frame '2'; 492 bp, 164 residues) 1 STQKEVMFLS ELEEILEVIN MAEFQKVMVP LFWRIGCCIN SYHFQVAERA LFLWNNDQIV 61 NLIAHNRHVI LPIIFPAVES NTQNHWNHAV QNLSLNVRRM FSEMDDVLFL ACHSHYKEEQ 121 EKIDLESEKR KEAWEQLETA ASLRPPVAGN IAVLVTPLAT SITC- PGL 3 (+ strand): 7900 8302 AGS-1 (7900 8302) SCR (e 0.885) Exon 1 7900 8302 ( 403 n); score: 0.885 PGS (7900 8302) SGN-U327907+ 3-phase translation of AGS-1 (+strand): . . . . . . 7900 AAAATATTACACAAGATGAGCCAATTGATCCTGTGAATATCAATAATCGTGATCTTCCTA K I L H K M S Q L I L - I S I I V I F L K Y Y T R - A N - S C E Y Q - S - S S - N I T Q D E P I D P V N I N N R D L P . . . . . . 7960 ATTACGGCTCACCTTCAGCTAGTAATAGTGATGATTTGCCTAATGCTGAGGAATCAGGAG I T A H L Q L V I V M I C L M L R N Q E L R L T F S - - - - - F A - C - G I R R N Y G S P S A S N S D D L P N A E E S G . . . . . . 8020 ATAATGTTCCATTTGAGGCATCATCTAGTGATGATGATTTTGACTCCCATTCGATCGCCA I M F H L R H H L V M M I L T P I R S P - C S I - G I I - - - - F - L P F D R Q D N V P F E A S S S D D D F D S H S I A . . . . . . 8080 AGACCAATGTCCATGAGTCCGTTTCGTAATCATTAATTCCTTATCTTGATCATCTCCCGG R P M S M S P F R N H - F L I L I I S R D Q C P - V R F V I I N S L S - S S P G K T N V H E S V S - S L I P Y L D H L P . . . . . . 8140 ATAGTCCATATATCTTTGGTGATACACATGATGAGTATACATCACAACGTACGTGGCATG I V H I S L V I H M M S I H H N V R G M - S I Y L W - Y T - - V Y I T T Y V A - D S P Y I F G D T H D E Y T S Q R T W H . . . . . . 8200 AACCAGAAGATTTCATGAATGATGCTATTTATATTGAAAAAGACATGTTATTCAATTCAA N Q K I S - M M L F I L K K T C Y S I Q T R R F H E - C Y L Y - K R H V I Q F K E P E D F M N D A I Y I E K D M L F N S . . . . . 8260 ATAAGCAGTTGCAAAGAGCAGTAAAACTTTTACATTTGAAGAT I S S C K E Q - N F Y I - R - A V A K S S K T F T F E D N K Q L Q R A V K L L H L K Maximal non-overlapping open reading frames (>= 64 codons): >C06HBa0046G10.1-5+_PGL-3_AGS-1_PPS_1 (7902 8108) (frame '0'; 204 bp, 68 residues) 1 NITQDEPIDP VNINNRDLPN YGSPSASNSD DLPNAEESGD NVPFEASSSD DDFDSHSIAK 61 TNVHESVS- >C06HBa0046G10.1-5+_PGL-3_AGS-1_PPS_2 (8109 8300) (frame '0'; 192 bp, 64 residues) 1 SLIPYLDHLP DSPYIFGDTH DEYTSQRTWH EPEDFMNDAI YIEKDMLFNS NKQLQRAVKL 61 LHLK 3-phase translation of AGS-1 (-strand): . . . . . . 8302 ATCTTCAAATGTAAAAGTTTTACTGCTCTTTGCAACTGCTTATTTGAATTGAATAACATG I F K C K S F T A L C N C L F E L N N M S S N V K V L L L F A T A Y L N - I T C L Q M - K F Y C S L Q L L I - I E - H . . . . . . 8242 TCTTTTTCAATATAAATAGCATCATTCATGAAATCTTCTGGTTCATGCCACGTACGTTGT S F S I - I A S F M K S S G S C H V R C L F Q Y K - H H S - N L L V H A T Y V V V F F N I N S I I H E I F W F M P R T L . . . . . . 8182 GATGTATACTCATCATGTGTATCACCAAAGATATATGGACTATCCGGGAGATGATCAAGA D V Y S S C V S P K I Y G L S G R - S R M Y T H H V Y H Q R Y M D Y P G D D Q D - C I L I M C I T K D I W T I R E M I K . . . . . . 8122 TAAGGAATTAATGATTACGAAACGGACTCATGGACATTGGTCTTGGCGATCGAATGGGAG - G I N D Y E T D S W T L V L A I E W E K E L M I T K R T H G H W S W R S N G S I R N - - L R N G L M D I G L G D R M G . . . . . . 8062 TCAAAATCATCATCACTAGATGATGCCTCAAATGGAACATTATCTCCTGATTCCTCAGCA S K S S S L D D A S N G T L S P D S S A Q N H H H - M M P Q M E H Y L L I P Q H V K I I I T R - C L K W N I I S - F L S . . . . . . 8002 TTAGGCAAATCATCACTATTACTAGCTGAAGGTGAGCCGTAATTAGGAAGATCACGATTA L G K S S L L L A E G E P - L G R S R L - A N H H Y Y - L K V S R N - E D H D Y I R Q I I T I T S - R - A V I R K I T I . . . . . 7942 TTGATATTCACAGGATCAATTGGCTCATCTTGTGTAATATTTT L I F T G S I G S S C V I F - Y S Q D Q L A H L V - Y F I D I H R I N W L I L C N I Maximal non-overlapping open reading frames (>= 64 codons): none PGL 4 (- strand): 19139 10528 AGS-1 (19139 19005,17844 17764,16277 15925,15735 15459,14342 14209,13930 13838,12993 12860,12534 12459,11733 11657,11569 11536,11453 11304,11218 11084,11002 10528) SCR (e 0.985 d 0.969 a 0.958,e 1.000 d 0.927 a 0.999,e 1.000 d 0.988 a 0.970,e 0.996 d 0.934 a 0.994,e 1.000 d 0.977 a 0.973,e 1.000 d 0.962 a 0.993,e 1.000 d 0.922 a 0.997,e 1.000 d 0.896 a 0.710,e 1.000 d 0.967 a 0.893,e 1.000 d 0.785 a 0.965,e 1.000 d 0.997 a 0.949,e 1.000 d 1.000 a 0.527,e 0.985) Exon 1 19139 19005 ( 135 n); score: 0.985 Intron 1 19004 17845 (1160 n); Pd: 0.969 Pa: 0.958 Exon 2 17844 17764 ( 81 n); score: 1.000 Intron 2 17763 16278 (1486 n); Pd: 0.927 Pa: 0.999 Exon 3 16277 15925 ( 353 n); score: 1.000 Intron 3 15924 15736 ( 189 n); Pd: 0.988 Pa: 0.970 Exon 4 15735 15459 ( 277 n); score: 0.996 Intron 4 15458 14343 (1116 n); Pd: 0.934 Pa: 0.994 Exon 5 14342 14209 ( 134 n); score: 1.000 Intron 5 14208 13931 ( 278 n); Pd: 0.977 Pa: 0.973 Exon 6 13930 13838 ( 93 n); score: 1.000 Intron 6 13837 12994 ( 844 n); Pd: 0.962 Pa: 0.993 Exon 7 12993 12860 ( 134 n); score: 1.000 Intron 7 12859 12535 ( 325 n); Pd: 0.922 Pa: 0.997 Exon 8 12534 12459 ( 76 n); score: 1.000 Intron 8 12458 11734 ( 725 n); Pd: 0.896 Pa: 0.710 Exon 9 11733 11657 ( 77 n); score: 1.000 Intron 9 11656 11570 ( 87 n); Pd: 0.967 Pa: 0.893 Exon 10 11569 11536 ( 34 n); score: 1.000 Intron 10 11535 11454 ( 82 n); Pd: 0.785 Pa: 0.965 Exon 11 11453 11304 ( 150 n); score: 1.000 Intron 11 11303 11219 ( 85 n); Pd: 0.997 Pa: 0.949 Exon 12 11218 11084 ( 135 n); score: 1.000 Intron 12 11083 11003 ( 81 n); Pd: 1.000 Pa: 0.527 Exon 13 11002 10528 ( 475 n); score: 0.985 PGS (19139 19005,17844 17764,16277 15925,15735 15459,14342 14209,13930 13838,12993 12860,12534 12459,11733 11657,11569 11536,11453 11304,11218 11084,11002 10528) SGN-U326225+ 3-phase translation of AGS-1 (-strand): . . . . . . 19139 ACCCCTTTTGGAACCACACAGACGAGCTACATTGATTGTATGACCGATCGGAGAAGGTAG T P F G T T Q T S Y I D C M T D R R R - P L L E P H R R A T L I V - P I G E G R P F W N H T D E L H - L Y D R S E K V . . . . . . 19079 AAACCCTAGCTCTGCAATCGAGGCACCGCCGTAGAACGGTGTTGCGGGCAGCTCATGAGC K P - L C N R G T A V E R C C G Q L M S N P S S A I E A P P - N G V A G S S - A E T L A L Q S R H R R R T V L R A A H E . . : . . . . 19019 TGTTAATAATGCTTA : GCTCGTCCCTGATTCAAGAGTACAGTGACAGTTGCTCCTTATTTA C - - C L : A R P - F K S T V T V A P Y L V N N A - : L V P D S R V Q - Q L L L I Y L L I M L : S S S L I Q E Y S D S C S L F . . . . : . . 17799 TATAAAGCTCTAGAATTGTGGTGGAAGACAATGCAG : TTGTAGCTCTGACAATTGGCATAT Y K A L E L W W K T M Q : L - L - Q L A Y I K L - N C G G R Q C S : C S S D N W H I I - S S R I V V E D N A : V V A L T I G I . . . . . . 16253 CACCACCTGGGTCAATGAGGAATGCAACTATGGCAACTGGATCTTCTAATCTTAAAGTGC H H L G Q - G M Q L W Q L D L L I L K C T T W V N E E C N Y G N W I F - S - S A S P P G S M R N A T M A T G S S N L K V . . . . . . 16193 CTACTATGCGAATCACAAGAGCACGGGCAAAAACCTTGGGTTCATCAGGAGGACTACCAC L L C E S Q E H G Q K P W V H Q E D Y H Y Y A N H K S T G K N L G F I R R T T T P T M R I T R A R A K T L G S S G G L P . . . . . . 16133 CTCTACACCCATCTGTCAGACAGGATAAGAAACAGGGACTTGTAACACAAGGAACAAAAT L Y T H L S D R I R N R D L - H K E Q N S T P I C Q T G - E T G T C N T R N K I P L H P S V R Q D K K Q G L V T Q G T K . . . . . . 16073 CCAAAAGACCAGCCCCAGATGAGAACAAACCAGCTAATTCTTCCAGTACTGCTTCTCAAC P K D Q P Q M R T N Q L I L P V L L L N Q K T S P R - E Q T S - F F Q Y C F S T S K R P A P D E N K P A N S S S T A S Q . . . . . . 16013 AGCCTAAGCGAAGGGCTGTTCTCAGGGATGTCACTAATGTGCTTTGTGAAAATCCGTACA S L S E G L F S G M S L M C F V K I R T A - A K G C S Q G C H - C A L - K S V H Q P K R R A V L R D V T N V L C E N P Y . . . : . . . 15953 TGAATTGCATCAATGGAAGCAAATTTCAG : GTTAAGAAATTCTCTGATAAGAGGAATTCAA - I A S M E A N F R : L R N S L I R G I Q E L H Q W K Q I S : G - E I L - - E E F K M N C I N G S K F Q : V K K F S D K R N S . . . . . . 15704 AGGTGACACCTGCTCTTTTGGTGAAAAAGCCTGAGCTTGAAGATAGAAAAGAGAGTGTGA R - H L L F W - K S L S L K I E K R V - G D T C S F G E K A - A - R - K R E C D K V T P A L L V K K P E L E D R K E S V . . . . . . 15644 TTGAAGAAGCAAAAATGGTAAAGGTTGAGGAATCACAAGAACACTGTTCACAAGCACACT L K K Q K W - R L R N H K N T V H K H T - R S K N G K G - G I T R T L F T S T L I E E A K M V K V E E S Q E H C S Q A H . . . . . . 15584 TCAAGGACCACCCATTTACTCAGCCAAGTGAATATATCACCGCCGCTCAAAGTGGTTTAG S R T T H L L S Q V N I S P P L K V V - Q G P P I Y S A K - I Y H R R S K W F S F K D H P F T Q P S E Y I T A A Q S G L . . . . . . 15524 TTGATCTTATGCCTGTGAATAGGAGTTCATGTAATGACATTACCCTCCAGACTACAACAC L I L C L - I G V H V M T L P S R L Q H - S Y A C E - E F M - - H Y P P D Y N T V D L M P V N R S S C N D I T L Q T T T . : . . . . . 15464 CAAAAG : ATGAAAGCAAGGTTTGCTTGAAACAGGAAGGCTCCAATTCGCTTAGTATTGCAG Q K : M K A R F A - N R K A P I R L V L Q K R : - K Q G L L E T G R L Q F A - Y C R P K : D E S K V C L K Q E G S N S L S I A . . . . . . 14288 ATATAGATTCAAAACACAAGGATCCACTAATGTGTAGTCTGTATGCTCCTGATATATATA I - I Q N T R I H - C V V C M L L I Y I Y R F K T Q G S T N V - S V C S - Y I - D I D S K H K D P L M C S L Y A P D I Y . . : . . . . 14228 ACAATTTGCAAGCCATGGAG : CTTGACCGGCGGCCTTCCTTTAATTATATGGAAAAGCTTC T I C K P W S : L T G G L P L I I W K S F Q F A S H G : A - P A A F L - L Y G K A S N N L Q A M E : L D R R P S F N Y M E K L . . . . . . : 13890 AGCGGGACATTAACAAGGGTATGCGAAGTATTCTTATTGATTGGCTTGTGGAG : GTATCTG S G T L T R V C E V F L L I G L W R : Y L A G H - Q G Y A K Y S Y - L A C G : G I - Q R D I N K G M R S I L I D W L V E : V S . . . . . . 12986 AAGAATATAGGCTGGTTCCGGACACTCTTTACCTGACTGTACATCTTATTGATAGGTTCC K N I G W F R T L F T - L Y I L L I G S R I - A G S G H S L P D C T S Y - - V P E E Y R L V P D T L Y L T V H L I D R F . . . . . . 12926 TTTCTGAGCATTACATTGAAAAACAAAAACTGCAGCTGCTTGGAGTTACCTGCATGCTAA F L S I T L K N K N C S C L E L P A C - F - A L H - K T K T A A A W S Y L H A N L S E H Y I E K Q K L Q L L G V T C M L . : . . . . . 12866 TTGCTTC : CAAATATGAAGAAATTTGTGCACCTCGTGTGGAAGAATTTTGCTTTATTACAG L L : P N M K K F V H L V W K N F A L L Q C F : Q I - R N L C T S C G R I L L Y Y R I A S : K Y E E I C A P R V E E F C F I T . . . : . . . 12481 ACAACACTTACTCGAAAGAAGAG : GTAGTAAGAATGGAAAGTCTGGTTCTGAATTTTTTGG T T L T R K K R : - - E W K V W F - I F W Q H L L E R R : G S K N G K S G S E F F G D N T Y S K E E : V V R M E S L V L N F L . . . . : . . 11696 GCTTTCAACTTGCTGCTCCGACCACCAAAAAGTTCCTGAG : GAGATTCGTTCAAGCATCAC A F N L L L R P P K S S - : G D S F K H H L S T C C S D H Q K V P E : E I R S S I T G F Q L A A P T T K K F L R : R F V Q A S . . : . . . . 11549 AAGCTTCTTATGAG : GTTCCCTCTGTTGAACTGGAATTCATGGCAAACTATTTAGCAGAGT K L L M R : F P L L N W N S W Q T I - Q S S F L - : G S L C - T G I H G K L F S R V Q A S Y E : V P S V E L E F M A N Y L A E . . . . . . 11407 TAACACTAGCTGAATATAGTTTTCTCAAGTTTCTTCCATCTGTTACTGCTGCATCAGCTG - H - L N I V F S S F F H L L L L H Q L N T S - I - F S Q V S S I C Y C C I S C L T L A E Y S F L K F L P S V T A A S A . . . . . : . 11347 TATTTCTAGCCAGATGGACACTTGATCAATCTAACCACCCATGG : AATTCAACTTTGGAGC Y F - P D G H L I N L T T H G : I Q L W S I S S Q M D T - S I - P P M : E F N F G A V F L A R W T L D Q S N H P W : N S T L E . . . . . . 11202 ACTACACTACATATAAGGCGTCAGATCTGAAAACTACAGTTCTTTTGCTGCAAGATTTAC T T L H I R R Q I - K L Q F F C C K I Y L H Y I - G V R S E N Y S S F A A R F T H Y T T Y K A S D L K T T V L L L Q D L . . . . . . : 11142 AGATGAACACCAGTGGAAGCACTCTGAATGCCATCCGTGAAAAGTATAAACAACCAAAG : T R - T P V E A L - M P S V K S I N N Q S : D E H Q W K H S E C H P - K V - T T K : V Q M N T S G S T L N A I R E K Y K Q P K : . . . . . . 11001 TCAAGTCCGTGGCAACTTTATCGTCTCCAAAACCAGTCCAATCACTGTTCTAGGAAATGC S S P W Q L Y R L Q N Q S N H C S R K C Q V R G N F I V S K T S P I T V L G N A F K S V A T L S S P K P V Q S L F - E M . . . . . . 10941 TGATTTTAAGTCTCGGTGGCCAATCCATGTTTGGCAGATCCAGTGTCACTTTTTCAAGCG - F - V S V A N P C L A D P V S L F Q A D F K S R W P I H V W Q I Q C H F F K R L I L S L G G Q S M F G R S S V T F S S . . . . . . 10881 AAGGAACATTAATCTTTAACATACAATAATTCATCCTTCCTGGAAAGAGACACATTCTTT K E H - S L T Y N N S S F L E R D T F F R N I N L - H T I I H P S W K E T H S F E G T L I F N I Q - F I L P G K R H I L . . . . . . 10821 TCAACCCTCTTTCGAATTTTAACCACATCTATCATCCTACCATGGCCCGTCAGATGATAC S T L F R I L T T S I I L P W P V R - Y Q P S F E F - P H L S S Y H G P S D D T F N P L S N F N H I Y H P T M A R Q M I . . . . . . 10761 AGAAAGCTGTAGATTTGAATGAAGTGGATGCACTAAGTTAAAAAGTAATGGCAATATGTA R K L - I - M K W M H - V K K - W Q Y V E S C R F E - S G C T K L K S N G N M - Q K A V D L N E V D A L S - K V M A I C . . . . . . 10701 AGTAACTTCACAGCACCTGGTTAGCTTCTTGCTATCATGTATATGAAGCTGTTTGAGAGC S N F T A P G - L L A I M Y M K L F E S V T S Q H L V S F L L S C I - S C L R A K - L H S T W L A S C Y H V Y E A V - E . . . . . . 10641 TCTTCTTGTTAAAATGGTTCCAAATTTGACGTTTCTATTCATTAAGCGCAATAAATCCTT S S C - N G S K F D V S I H - A Q - I L L L V K M V P N L T F L F I K R N K S F L F L L K W F Q I - R F Y S L S A I N P . . . . . . 10581 TTCCATTCTGGACGAGATACAAATTGTTTAAGTCTATCAAGCTTACATAACTTT F H S G R D T N C L S L S S L H N F S I L D E I Q I V - V Y Q A Y I T F P F W T R Y K L F K S I K L T - L Maximal non-overlapping open reading frames (>= 64 codons): >C06HBa0046G10.1-5-_PGL-4_AGS-1_PPS_1 (17794 17764,16277 15925,15735 15459,14342 14209,13930 13838,12993 12860,12534 12459,11733 11657,11569 11536,11453 11304,11218 11084,11002 10949) (frame '0'; 1545 bp, 515 residues) 1 SSRIVVEDNA VVALTIGISP PGSMRNATMA TGSSNLKVPT MRITRARAKT LGSSGGLPPL 61 HPSVRQDKKQ GLVTQGTKSK RPAPDENKPA NSSSTASQQP KRRAVLRDVT NVLCENPYMN 121 CINGSKFQVK KFSDKRNSKV TPALLVKKPE LEDRKESVIE EAKMVKVEES QEHCSQAHFK 181 DHPFTQPSEY ITAAQSGLVD LMPVNRSSCN DITLQTTTPK DESKVCLKQE GSNSLSIADI 241 DSKHKDPLMC SLYAPDIYNN LQAMELDRRP SFNYMEKLQR DINKGMRSIL IDWLVEVSEE 301 YRLVPDTLYL TVHLIDRFLS EHYIEKQKLQ LLGVTCMLIA SKYEEICAPR VEEFCFITDN 361 TYSKEEVVRM ESLVLNFLGF QLAAPTTKKF LRRFVQASQA SYEVPSVELE FMANYLAELT 421 LAEYSFLKFL PSVTAASAVF LARWTLDQSN HPWNSTLEHY TTYKASDLKT TVLLLQDLQM 481 NTSGSTLNAI REKYKQPKFK SVATLSSPKP VQSLF- ... finished at: Mon Jul 24 23:35:43 2006 ________________________________________________________________________________ Sequence 6: C06HBa0046G10.1-6, from 1 to 4924, both strands analyzed. ... started at: Mon Jul 24 23:35:43 2006 EST library file: /tmp/cxgn-bacpublish-resources-3cdDhp/lycopersicum_combined_unigene_seqs; matching gDNA +strand ... ... found all matches, elapsed seconds = 1 ... matches indexed, elapsed seconds = 1 HitsTableSize = 0 EST library file: /tmp/cxgn-bacpublish-resources-3cdDhp/lycopersicum_combined_unigene_seqs; matching gDNA -strand ... ... found all matches, elapsed seconds = 2 ... matches indexed, elapsed seconds = 2 HitsTableSize = 1 ******************************************************************************** EST sequence 1 +strand 1065 n (File: SGN-U344845+) 1 GGCGGCGCTC TAGAATAGTG GATCCCCCGG GCTGCAGGAA TTCGGCACGA GGCATTGAAG 61 TCCATGGATA CTAAGTATGA TTTGCAATTG AATCAAAATG CTACAATGAG AGTGATATGG 121 GCTTTAGGTT TGATAAAACC TCCGGATAGT CTTCGGCCTT TTTATCTCCC ACAAAATCAT 181 GGTGGTAGCT ATGGGCACTT GACACTGAAT GTCTCGGAAC ATATTGATGA TTGCTTGGGG 241 CCGCTGGATG CAGAAGATAA ACAAGATCAA GACCTTGTCA TTGCAGATAA AAAAGGACCA 301 CTTGTTGTTT CAACAGGTCC AGCTGTGTTC TACCCAAATC CTCCAAACCC TTCTAAAGTT 361 CTCTACATTA ACAAGAAAGA GGCACCCCTT CTCAGGGTAG AGAGGGGTGT TCAAGTAAAG 421 TTTTCAATTC AGGCTGGGCA TGATGTTGCC TTCTATATAA CCTCAGATCC ACTTGGTGGA 481 AATGCTACAT TGAGGAATAT GTCAGAGACC ATCTACTTTG GGGGACCTGA AGCACAAGGA 541 GTTCAAGCCA CTCCCACAGA ATTAGTTTGG GCTCCTGACC GGAACACGCC AGATTTAGTT 601 TACTATCAGT CTCTATATGC TCAGAAAATG GGGTGGAAAG TTCAAGTGGT TGATGCAGGC 661 TTACCTGATA TGTATAACAG CAGCGTAGTT CTGGATGATC AGCAGGTTAC TTCTTTTGGA 721 CGTTGGCTGA AAATTCAATC TCCATTGCAG CTCGAGGGGA GAAAAAGAGT GGTTATTTGG 781 CAATTGGTTT TGGTCGTGGT ATGGTGAATA GTTATGCATA CGTGGGCTGG GTTGATGACA 841 CTGGTAACGG GAAAGTAAGC ACATACTGGA TAGATGGAAA AGATGCTTTC AATAATTCCC 901 CCCACTCATG AAAATTTGAC ACCCGCCAAA ATGCAAGTCA AAAAAAGGGT ATTATTTATA 961 TTGGAATTCC CCCGGTCCAC TAACGTTCCC CTTTGGGAAT CTGGGAGAAT AACCCCAAAA 1021 ATCGCAATAA ATAATTGTTG AATCCCACCG AACCCCCCTC CAAAG Predicted gene structure (within gDNA segment 3880 to 1): Exon 1 2760 1835 ( 926 n); cDNA 53 982 ( 930 n); score: 0.971 MATCH C06HBa0046G10.1-6- SGN-U344845+ 0.971 926 0.869 C PGS_C06HBa0046G10.1-6-_SGN-U344845+ (2760 1835) Alignment (genomic DNA sequence = upper lines): CATTGAAGTC CATGGATACT AAGTATGATT TGCAATTGAA TCAAAATGCT ACAATGAGAG 2701 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATTGAAGTC CATGGATACT AAGTATGATT TGCAATTGAA TCAAAATGCT ACAATGAGAG 112 TGATATGGGC TTTAGGTTTG ATAAAACCTC CGGATAGTCT TCGGCCTTTT TATCTCCCAC 2641 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGATATGGGC TTTAGGTTTG ATAAAACCTC CGGATAGTCT TCGGCCTTTT TATCTCCCAC 172 AAAATCATGG TGGTAGCTAT GGGCACTTGA CACTGAATGT CTCGGAACAT ATTGATGATT 2581 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAATCATGG TGGTAGCTAT GGGCACTTGA CACTGAATGT CTCGGAACAT ATTGATGATT 232 GCTTGGGGCC GCTGGATGCA GAAGATAAAC AAGATCAAGA CCTTGTCATT GCAGATAAAA 2521 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTTGGGGCC GCTGGATGCA GAAGATAAAC AAGATCAAGA CCTTGTCATT GCAGATAAAA 292 AAGGACCACT TGTTGTTTCA ACAGGTCCAG CTGTGTTCTA CCCAAATCCT CCAAACCCTT 2461 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGGACCACT TGTTGTTTCA ACAGGTCCAG CTGTGTTCTA CCCAAATCCT CCAAACCCTT 352 CTAAAGTTCT CTACATTAAC AAGAAAGAGG CACCCCTTCT CAGGGTAGAG AGGGGTGTTC 2401 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTAAAGTTCT CTACATTAAC AAGAAAGAGG CACCCCTTCT CAGGGTAGAG AGGGGTGTTC 412 AAGTAAAGTT TTCAATTCAG GCTGGGCATG ATGTTGCCTT CTATATAACC TCAGATCCAC 2341 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGTAAAGTT TTCAATTCAG GCTGGGCATG ATGTTGCCTT CTATATAACC TCAGATCCAC 472 TTGGTGGAAA TGCTACATTG AGGAATATGT CAGAGACCAT CTACTTTGGG GGACCTGAAG 2281 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGGTGGAAA TGCTACATTG AGGAATATGT CAGAGACCAT CTACTTTGGG GGACCTGAAG 532 CACAAGGAGT TCAAGCCACT CCCACAGAAT TAGTTTGGGC TCCTGACCGG AACACGCCAG 2221 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CACAAGGAGT TCAAGCCACT CCCACAGAAT TAGTTTGGGC TCCTGACCGG AACACGCCAG 592 ATTTAGTTTA CTATCAGTCT CTATATGCTC AGAAAATGGG GTGGAAAGTT CAAGTGGTTG 2161 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTTAGTTTA CTATCAGTCT CTATATGCTC AGAAAATGGG GTGGAAAGTT CAAGTGGTTG 652 ATGCAGGCTT ACCTGATATG TATAACAGCA GCGTAGTTCT GGATGATCAG CAGGTTACTT 2101 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||| | ATGCAGGCTT ACCTGATATG TATAACAGCA GCGTAGTTCT GGATGATCAG CAGGTTAC-T 711 TCTTTTGGAC GTTGGCTGAA AATTCAATCT CCATTGCAGC TCGAGGGGAG AAAAAGAGTG 2041 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTTTTGGAC GTTGGCTGAA AATTCAATCT CCATTGCAGC TCGAGGGGAG AAAAAGAGTG 771 GTTATTTGGC AATTGGTTTT GGTCGTGGTA TGGTGAATAG TTATGCATAC GTGGGCTGGG 1981 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTATTTGGC AATTGGTTTT GGTCGTGGTA TGGTGAATAG TTATGCATAC GTGGGCTGGG 831 TTGATGACAC TGGTAACGGG AAAGTAAGCA CATACTGGAT AGATGGAAGA GATGCTTCCA 1921 |||||||||| |||||||||| |||||||||| |||||||||| |||||||| | ||||||| || TTGATGACAC TGGTAACGGG AAAGTAAGCA CATACTGGAT AGATGGAAAA GATGCTTTCA 891 AT-ATTCACC CAACTCATGA GAATTTGACA CACG-CAAGA TGCAAGTC-A GAGAATGGTA 1864 || |||| || | |||||||| ||||||||| | || ||| | |||||||| | | || |||| ATAATTCCCC CCACTCATGA AAATTTGACA CCCGCCAAAA TGCAAGTCAA AAAAAGGGTA 951 TTATTACTA- TGGAATTCAC CC-GTCCACT A 1835 ||||| || |||||||| | || ||||||| | TTATTTATAT TGGAATTCCC CCGGTCCACT A 982 hqPGS_C06HBa0046G10.1-6-_SGN-U344845+ (2760 1835) Total number of EST alignments reported: 1 ________________________________________________________________________________ Predicted gene locations (1) in segment 1 to 4924: PGL 1 (- strand): 2760 1835 AGS-1 (2760 1835) SCR (e 0.971) Exon 1 2760 1835 ( 926 n); score: 0.971 PGS (2760 1835) SGN-U344845+ 3-phase translation of AGS-1 (-strand): . . . . . . 2760 CATTGAAGTCCATGGATACTAAGTATGATTTGCAATTGAATCAAAATGCTACAATGAGAG H - S P W I L S M I C N - I K M L Q - E I E V H G Y - V - F A I E S K C Y N E S L K S M D T K Y D L Q L N Q N A T M R . . . . . . 2700 TGATATGGGCTTTAGGTTTGATAAAACCTCCGGATAGTCTTCGGCCTTTTTATCTCCCAC - Y G L - V - - N L R I V F G L F I S H D M G F R F D K T S G - S S A F L S P T V I W A L G L I K P P D S L R P F Y L P . . . . . . 2640 AAAATCATGGTGGTAGCTATGGGCACTTGACACTGAATGTCTCGGAACATATTGATGATT K I M V V A M G T - H - M S R N I L M I K S W W - L W A L D T E C L G T Y - - L Q N H G G S Y G H L T L N V S E H I D D . . . . . . 2580 GCTTGGGGCCGCTGGATGCAGAAGATAAACAAGATCAAGACCTTGTCATTGCAGATAAAA A W G R W M Q K I N K I K T L S L Q I K L G A A G C R R - T R S R P C H C R - K C L G P L D A E D K Q D Q D L V I A D K . . . . . . 2520 AAGGACCACTTGTTGTTTCAACAGGTCCAGCTGTGTTCTACCCAAATCCTCCAAACCCTT K D H L L F Q Q V Q L C S T Q I L Q T L R T T C C F N R S S C V L P K S S K P F K G P L V V S T G P A V F Y P N P P N P . . . . . . 2460 CTAAAGTTCTCTACATTAACAAGAAAGAGGCACCCCTTCTCAGGGTAGAGAGGGGTGTTC L K F S T L T R K R H P F S G - R G V F - S S L H - Q E R G T P S Q G R E G C S S K V L Y I N K K E A P L L R V E R G V . . . . . . 2400 AAGTAAAGTTTTCAATTCAGGCTGGGCATGATGTTGCCTTCTATATAACCTCAGATCCAC K - S F Q F R L G M M L P S I - P Q I H S K V F N S G W A - C C L L Y N L R S T Q V K F S I Q A G H D V A F Y I T S D P . . . . . . 2340 TTGGTGGAAATGCTACATTGAGGAATATGTCAGAGACCATCTACTTTGGGGGACCTGAAG L V E M L H - G I C Q R P S T L G D L K W W K C Y I E E Y V R D H L L W G T - S L G G N A T L R N M S E T I Y F G G P E . . . . . . 2280 CACAAGGAGTTCAAGCCACTCCCACAGAATTAGTTTGGGCTCCTGACCGGAACACGCCAG H K E F K P L P Q N - F G L L T G T R Q T R S S S H S H R I S L G S - P E H A R A Q G V Q A T P T E L V W A P D R N T P . . . . . . 2220 ATTTAGTTTACTATCAGTCTCTATATGCTCAGAAAATGGGGTGGAAAGTTCAAGTGGTTG I - F T I S L Y M L R K W G G K F K W L F S L L S V S I C S E N G V E S S S G - D L V Y Y Q S L Y A Q K M G W K V Q V V . . . . . . 2160 ATGCAGGCTTACCTGATATGTATAACAGCAGCGTAGTTCTGGATGATCAGCAGGTTACTT M Q A Y L I C I T A A - F W M I S R L L C R L T - Y V - Q Q R S S G - S A G Y F D A G L P D M Y N S S V V L D D Q Q V T . . . . . . 2100 TCTTTTGGACGTTGGCTGAAAATTCAATCTCCATTGCAGCTCGAGGGGAGAAAAAGAGTG S F G R W L K I Q S P L Q L E G R K R V L L D V G - K F N L H C S S R G E K E W F F W T L A E N S I S I A A R G E K K S . . . . . . 2040 GTTATTTGGCAATTGGTTTTGGTCGTGGTATGGTGAATAGTTATGCATACGTGGGCTGGG V I W Q L V L V V V W - I V M H T W A G L F G N W F W S W Y G E - L C I R G L G G Y L A I G F G R G M V N S Y A Y V G W . . . . . . 1980 TTGATGACACTGGTAACGGGAAAGTAAGCACATACTGGATAGATGGAAGAGATGCTTCCA L M T L V T G K - A H T G - M E E M L P - - H W - R E S K H I L D R W K R C F Q V D D T G N G K V S T Y W I D G R D A S . . . . . . 1920 ATATTCACCCAACTCATGAGAATTTGACACACGCAAGATGCAAGTCAGAGAATGGTATTA I F T Q L M R I - H T Q D A S Q R M V L Y S P N S - E F D T R K M Q V R E W Y Y N I H P T H E N L T H A R C K S E N G I . . . 1860 TTACTATGGAATTCACCCGTCCACTA L L W N S P V H Y Y G I H P S T I T M E F T R P L Maximal non-overlapping open reading frames (>= 64 codons): >C06HBa0046G10.1-6-_PGL-1_AGS-1_PPS_1 (2758 1835) (frame '0'; 924 bp, 308 residues) 1 LKSMDTKYDL QLNQNATMRV IWALGLIKPP DSLRPFYLPQ NHGGSYGHLT LNVSEHIDDC 61 LGPLDAEDKQ DQDLVIADKK GPLVVSTGPA VFYPNPPNPS KVLYINKKEA PLLRVERGVQ 121 VKFSIQAGHD VAFYITSDPL GGNATLRNMS ETIYFGGPEA QGVQATPTEL VWAPDRNTPD 181 LVYYQSLYAQ KMGWKVQVVD AGLPDMYNSS VVLDDQQVTF FWTLAENSIS IAARGEKKSG 241 YLAIGFGRGM VNSYAYVGWV DDTGNGKVST YWIDGRDASN IHPTHENLTH ARCKSENGII 301 TMEFTRPL 3-phase translation of AGS-1 (+strand): . . . . . . 1835 TAGTGGACGGGTGAATTCCATAGTAATAATACCATTCTCTGACTTGCATCTTGCGTGTGT - W T G E F H S N N T I L - L A S C V C S G R V N S I V I I P F S D L H L A C V V D G - I P - - - Y H S L T C I L R V . . . . . . 1895 CAAATTCTCATGAGTTGGGTGAATATTGGAAGCATCTCTTCCATCTATCCAGTATGTGCT Q I L M S W V N I G S I S S I Y P V C A K F S - V G - I L E A S L P S I Q Y V L S N S H E L G E Y W K H L F H L S S M C . . . . . . 1955 TACTTTCCCGTTACCAGTGTCATCAACCCAGCCCACGTATGCATAACTATTCACCATACC Y F P V T S V I N P A H V C I T I H H T T F P L P V S S T Q P T Y A - L F T I P L L S R Y Q C H Q P S P R M H N Y S P Y . . . . . . 2015 ACGACCAAAACCAATTGCCAAATAACCACTCTTTTTCTCCCCTCGAGCTGCAATGGAGAT T T K T N C Q I T T L F L P S S C N G D R P K P I A K - P L F F S P R A A M E I H D Q N Q L P N N H S F S P L E L Q W R . . . . . . 2075 TGAATTTTCAGCCAACGTCCAAAAGAAAGTAACCTGCTGATCATCCAGAACTACGCTGCT - I F S Q R P K E S N L L I I Q N Y A A E F S A N V Q K K V T C - S S R T T L L L N F Q P T S K R K - P A D H P E L R C . . . . . . 2135 GTTATACATATCAGGTAAGCCTGCATCAACCACTTGAACTTTCCACCCCATTTTCTGAGC V I H I R - A C I N H L N F P P H F L S L Y I S G K P A S T T - T F H P I F - A C Y T Y Q V S L H Q P L E L S T P F S E . . . . . . 2195 ATATAGAGACTGATAGTAAACTAAATCTGGCGTGTTCCGGTCAGGAGCCCAAACTAATTC I - R L I V N - I W R V P V R S P N - F Y R D - - - T K S G V F R S G A Q T N S H I E T D S K L N L A C S G Q E P K L I . . . . . . 2255 TGTGGGAGTGGCTTGAACTCCTTGTGCTTCAGGTCCCCCAAAGTAGATGGTCTCTGACAT C G S G L N S L C F R S P K V D G L - H V G V A - T P C A S G P P K - M V S D I L W E W L E L L V L Q V P Q S R W S L T . . . . . . 2315 ATTCCTCAATGTAGCATTTCCACCAAGTGGATCTGAGGTTATATAGAAGGCAACATCATG I P Q C S I S T K W I - G Y I E G N I M F L N V A F P P S G S E V I - K A T S C Y S S M - H F H Q V D L R L Y R R Q H H . . . . . . 2375 CCCAGCCTGAATTGAAAACTTTACTTGAACACCCCTCTCTACCCTGAGAAGGGGTGCCTC P S L N - K L Y L N T P L Y P E K G C L P A - I E N F T - T P L S T L R R G A S A Q P E L K T L L E H P S L P - E G V P . . . . . . 2435 TTTCTTGTTAATGTAGAGAACTTTAGAAGGGTTTGGAGGATTTGGGTAGAACACAGCTGG F L V N V E N F R R V W R I W V E H S W F L L M - R T L E G F G G F G - N T A G L S C - C R E L - K G L E D L G R T Q L . . . . . . 2495 ACCTGTTGAAACAACAAGTGGTCCTTTTTTATCTGCAATGACAAGGTCTTGATCTTGTTT T C - N N K W S F F I C N D K V L I L F P V E T T S G P F L S A M T R S - S C L D L L K Q Q V V L F Y L Q - Q G L D L V . . . . . . 2555 ATCTTCTGCATCCAGCGGCCCCAAGCAATCATCAATATGTTCCGAGACATTCAGTGTCAA I F C I Q R P Q A I I N M F R D I Q C Q S S A S S G P K Q S S I C S E T F S V K Y L L H P A A P S N H Q Y V P R H S V S . . . . . . 2615 GTGCCCATAGCTACCACCATGATTTTGTGGGAGATAAAAAGGCCGAAGACTATCCGGAGG V P I A T T M I L W E I K R P K T I R R C P - L P P - F C G R - K G R R L S G G S A H S Y H H D F V G D K K A E D Y P E . . . . . . 2675 TTTTATCAAACCTAAAGCCCATATCACTCTCATTGTAGCATTTTGATTCAATTGCAAATC F Y Q T - S P Y H S H C S I L I Q L Q I F I K P K A H I T L I V A F - F N C K S V L S N L K P I S L S L - H F D S I A N . . . 2735 ATACTTAGTATCCATGGACTTCAATG I L S I H G L Q Y L V S M D F N H T - Y P W T S M Maximal non-overlapping open reading frames (>= 64 codons): >C06HBa0046G10.1-6+_PGL-1_AGS-1_PPS_1 (1864 2106) (frame '0'; 240 bp, 80 residues) 1 YHSLTCILRV SNSHELGEYW KHLFHLSSMC LLSRYQCHQP SPRMHNYSPY HDQNQLPNNH 61 SFSPLELQWR LNFQPTSKRK - >C06HBa0046G10.1-6+_PGL-1_AGS-1_PPS_2 (2107 2328) (frame '0'; 219 bp, 73 residues) 1 PADHPELRCC YTYQVSLHQP LELSTPFSEH IETDSKLNLA CSGQEPKLIL WEWLELLVLQ 61 VPQSRWSLTY SSM- ... finished at: Mon Jul 24 23:35:47 2006 ________________________________________________________________________________ Sequence 7: C06HBa0046G10.1-7, from 1 to 1885, both strands analyzed. ... started at: Mon Jul 24 23:35:47 2006 EST library file: /tmp/cxgn-bacpublish-resources-3cdDhp/lycopersicum_combined_unigene_seqs; matching gDNA +strand ... ... found all matches, elapsed seconds = 1 ... matches indexed, elapsed seconds = 1 HitsTableSize = 0 EST library file: /tmp/cxgn-bacpublish-resources-3cdDhp/lycopersicum_combined_unigene_seqs; matching gDNA -strand ... ... found all matches, elapsed seconds = 2 ... matches indexed, elapsed seconds = 2 HitsTableSize = 0 No significant EST matches were found. ... finished at: Mon Jul 24 23:35:50 2006 ________________________________________________________________________________ Sequence 8: C06HBa0046G10.1-8, from 1 to 5464, both strands analyzed. ... started at: Mon Jul 24 23:35:50 2006 EST library file: /tmp/cxgn-bacpublish-resources-3cdDhp/lycopersicum_combined_unigene_seqs; matching gDNA +strand ... ... found all matches, elapsed seconds = 1 ... matches indexed, elapsed seconds = 1 HitsTableSize = 1 EST library file: /tmp/cxgn-bacpublish-resources-3cdDhp/lycopersicum_combined_unigene_seqs; matching gDNA -strand ... ... found all matches, elapsed seconds = 2 ... matches indexed, elapsed seconds = 2 HitsTableSize = 1 ******************************************************************************** EST sequence 1 -strand 1190 n (File: SGN-U322569-) 1 TTTTCTTTTT TTTTGGTTAA TGACTAATTT ATAATTATTA TTTTGATAAT CAAATTTATT 61 TATATTTCAC TAATATTCTT GTAAAACTTA TTGTAGATGA CCAAAATTTT TCTTTGAATA 121 CCAAATTAAA TTACAATACA CACAAAAAAA ATAGTTTAGT TTTTTTTCTC TTTAAACTAA 181 GGAATGAAAG AAAAAAAATT AGAATAACAA ACTCAAATAA TTATAATAAA AGAAGTCAAA 241 CAATAATTTA TGTATAAAAA AAATTAAATA TAACCTCGAA CTTTGATAGA AGAATAATAT 301 ATACCTTTAA ATAATTTTTT TAAAAACAAT CAAAAGTAAT AAATATAAAT TTAAAATTAA 361 TTTTTTAATA TATATTAGCC ATTTTGTAAC GACAGTGCTG CAAATGACAA AATTGAGAAA 421 TATATCAAAC TTTTTCCGTA AAATAGATAA ACTTAAAAGA GGATATTTGT AAACAACACA 481 AAATCTTCAA TCAAATACAA AGTTCAAACA CTAGCAGTGA ACCAAATCAT CGAAAAGTTA 541 TAAAATTGTT AGAAATTTCT ACCATATATT GGATGAAAAC ATTGAAATTT CCTGGAATTT 601 TGAACTTTAG GTTGCTGGTT TGGATCGGTA TTCGTGTTTG CTCCGACTTT GGAGCTACTG 661 GTTGTGAGAT CTGATTGATT TCTGCCATTG TTGGCGCTGG TTGTTTCATG GTTCCGAGCT 721 CATGGGTTTC AGTCATGACC TGCAAAAATA CAAGAGGAAT CGTGAAAGGG GAAGAGGAAT 781 GGATCTGACA GCGATTTTGG TGTTATATTC AGTGACTATT TCACCGGAAA AGGGAGAAAA 841 ATGAAGAGGG GTTTGGTCTG GTTGTAGTCT GTCTGGCGTG AGGTGGTGGT TTCCAGCGGG 901 TTTTTAGTTG TGGAAGTCGA TTATAGGTTT TTTTTGTAGG ACTCGTGAAG ACTTGGTTTT 961 TCATCGGAAC AGTTGATTTC GGTTCTGGTT CGCTGATCTG GTTGCAACGA TGAAAAGGGG 1021 GACGAGGGTA TTGCTAGAAA CAATGGAAAA GGGGAAGGTG TTCTGGTCAT TTGCTGCTAT 1081 AGCGGTGGAG TTGGAAGCTG GTTTCCCCGG AAAAAAAACT AAGAGGATGC CGGCGGAACT 1141 CTGGTTAACT TGTTACCGAA AAATAAAAGA ATAAAAAATT ACCCCAAAAG Predicted gene structure (within gDNA segment 3211 to 1): Exon 1 2313 1916 ( 398 n); cDNA 1 399 ( 399 n); score: 0.795 Intron 1 1915 1847 ( 69 n); Pd: 0.000 (s: 0.62), Pa: 0.000 (s: 0.74) Exon 2 1846 1795 ( 52 n); cDNA 400 450 ( 51 n); score: 0.731 Intron 2 1794 1127 ( 668 n); Pd: 0.000 (s: 0.74), Pa: 0.000 (s: 0) Exon 3 1126 1108 ( 19 n); cDNA 451 469 ( 19 n); score: 0.684 Intron 3 1107 403 ( 705 n); Pd: 0.900 (s: 0), Pa: 0.000 (s: 0.62) Exon 4 402 297 ( 106 n); cDNA 470 570 ( 101 n); score: 0.632 MATCH C06HBa0046G10.1-8- SGN-U322569- 0.758 575 0.483 C PGS_C06HBa0046G10.1-8-_SGN-U322569- (2313 1916,1846 1795,1126 1108,402 297) Alignment (genomic DNA sequence = upper lines): TTTTATTTTT TTTCTTTCAA TGACTAATTT AAAATTATTA TTTTGATAAT TAAATTTATT 2254 |||| ||||| ||| | || |||||||||| | |||||||| |||||||||| ||||||||| TTTTCTTTTT TTTTGGTTAA TGACTAATTT ATAATTATTA TTTTGATAAT CAAATTTATT 60 TATATTTCAC TAATATTCTT GTAAAACTTA TTGTAGATGA TAAAACTTTT TTCTTCGAAT 2194 |||||||||| |||||||||| |||||||||| |||||||||| ||| ||| ||||| |||| TATATTTCAC TAATATTCTT GTAAAACTTA TTGTAGATGA CCAAA-ATTT TTCTTTGAAT 119 ACAAAAATCA AATTACAATA --TAGAAAAA AA-TAGTTTA A-TTTTTTT- TCTTTAAACT 2139 || |||| | |||||||||| | ||||| || ||||||| ||||||| |||||||||| AC-CAAATTA AATTACAATA CACACAAAAA AAATAGTTTA GTTTTTTTTC TCTTTAAACT 178 AAGGAATGAA AGAAAAAAAA -AAGAATAAG AAACTCAAAT GATTATAATA AAAGAAGTCA 2080 |||||||||| |||||||||| ||||||| |||||||||| ||||||||| |||||||||| AAGGAATGAA AGAAAAAAAA TTAGAATAAC AAACTCAAAT AATTATAATA AAAGAAGTCA 238 AAAAATAATT TGTGTATGAA AAAAAATTAA ATAT-ACCTT GAACTTTGAT AGAAGAATCA 2021 || ||||||| | ||||| || |||||||||| |||| |||| |||||||||| |||||||| | AACAATAATT TATGTAT-AA AAAAAATTAA ATATAACCTC GAACTTTGAT AGAAGAATAA 297 TATATACCCC TAAATCATTT TTTTTTTAAA AAATAATTTA AAACTAATTT TTTAACTTCC 1961 |||||||| ||||| | || ||||| ||| ||| | | | ||| | | | | TATATACCTT TAAAT-AATT TTTTTAAAAA CAATCA-AAA GTAATAAATA TAAATTTAAA 355 GTTAAATGAA GCGTATATGT AAGCTCATTT TGTAAGGAAA GGGGTATATG TGAGTCATTT 1901 |||| | ||||| | ||| ||||| ||||| || | | | | ATTAATTTTT TAATATATAT TAGC-CATTT TGTAACGACA GTGCT..... .......... 399 CTATAACAGT AAAGGTATAT ATGAGTCACT TTCAATTCGA GGAATATATC AAACCCAAAT 1841 ||||| .......... .......... .......... .......... .......... ....GCAAAT 405 GACAAAGTTG GGTGGTATAT CAAACCTTTT TTCCTAACTT TAATGATTTT ATTTTGACAC 1781 |||||| ||| | ||||| |||| ||||| | | ||| | || | GACAAAATTG AGAAATATAT CAAA-CTTTT TCCGTAAAAT AGATAA.... .......... 450 ATTACTGGAG TCTTTGCATG TTGCATCTCC AAACTTACTT TTTATTTTAC TCTCTAAATA 1721 .......... .......... .......... .......... .......... .......... 450 TAAAATTATT TATTTATTCA AATAACTAAC TTCAATTTAA TTTCTTATTT ATTCTCAAAA 1661 .......... .......... .......... .......... .......... .......... 450 AAGAAATCTT TTTTCTTTTT TTGATATTAT ATTACTATTT CTATTTTATT TTTATTTTCT 1601 .......... .......... .......... .......... .......... .......... 450 TATTTCTTAA TATATATTAT TACTTCTTTT TGCAAATAAT CACTCTATAC TCTATATTAT 1541 .......... .......... .......... .......... .......... .......... 450 CTTTATGTAA TATAAAATTT TGTTCTTCTT TGAATTCTTC GTTTAACAAT TATATTTTAT 1481 .......... .......... .......... .......... .......... .......... 450 TTTAAATTTC TAAATAACAT ATATTACCAT AGATATTATA TATACTACAT ATTAATGAAC 1421 .......... .......... .......... .......... .......... .......... 450 AACTTAAATA AAGTGAAATT ACTGATGAAA TACATAATAA ATATTGTATA ATGTAAAATT 1361 .......... .......... .......... .......... .......... .......... 450 TACATAAATA TTCAACTTTC AAGACTATTA TGTTGCTTTT GTAACTGTTC TATTAATGTA 1301 .......... .......... .......... .......... .......... .......... 450 TACCGTAGTT CAAAATGAAC AATTTTTTGT CATTATTTTA CGCGTATCTA ATAATTGTTT 1241 .......... .......... .......... .......... .......... .......... 450 AAATTAACAA TTTAATTTTG TATCCAATTG TTTTGTGTAA TAATTTACTC CCTATATTTC 1181 .......... .......... .......... .......... .......... .......... 450 ATTTTGAACT ATTGCATCAA ATATTTTCAT ATTTGAATAT AAGATGAAAT TGTTAATTGA 1121 | || | .......... .......... .......... .......... .......... ....ACTTAA 456 AACAATTTAT TTGATATCCT CCAAATATAG AGAATAGAGA GTAAATTTAA ACTATTTTGT 1061 || | ||| ||| AAGAGGATAT TTG....... .......... .......... .......... .......... 469 GTACTAATTA TTTCATCCAT TTTGTATTTT TTTCCCTCTT CTTTTCCTTC GCCAAATAGT 1001 .......... .......... .......... .......... .......... .......... 469 TGTGGAGTGT TTGATTTCAA AATTATGTAT GAGTATCTAA AAAAAAAGTA TTCTTTTTAA 941 .......... .......... .......... .......... .......... .......... 469 AGTATAAAAT GATATAATAA TTGGAGTTAT GTTTAACTAT AAATACAATT GAAAATATTT 881 .......... .......... .......... .......... .......... .......... 469 TTGGAATTCT TTGAGTAATT TTAAAGTTTT TTAAAAAAAA TTAAAAACAT GTTTTTGATA 821 .......... .......... .......... .......... .......... .......... 469 ATTAAAAAAA AATCCGGAAA ATTGTAAAAA TTTACAATAA AACACATTTT TCGAGCAAAC 761 .......... .......... .......... .......... .......... .......... 469 TAAATCATGA TCAAACATAA ATTACATATT TGCAATATTT ACATAAACCT CAATTAGTGC 701 .......... .......... .......... .......... .......... .......... 469 AATCAGATGC TGTATTAGCC ACATAGTCAC ATTTCGTTGC AATTAGGGGA TTTAACGAGG 641 .......... .......... .......... .......... .......... .......... 469 GCTAATTTTA TAAATAGCAG ATATTAAATT TAATAAGCCT TTTAAGTTAT AATTTTCCTA 581 .......... .......... .......... .......... .......... .......... 469 ATTTCACTTC ATAGTTATAG CGTTGTTTGT TAAAGAAATT TTCATTTGCC AATATAAACA 521 .......... .......... .......... .......... .......... .......... 469 AGGTAAAGAA AAAAAATTGT GCATTTATTC ATTTATGAAT TTTTCATGAT TCTAATAGTA 461 .......... .......... .......... .......... .......... .......... 469 TATTTTGGTT GCCAATATAC AAATAAGATA ATTTTTTATG ATTTTTTTTT TTATAAATTA 401 || .......... .......... .......... .......... .......... ........TA 471 TACATCAAAT GTATCACCAA TCAGATAC-A ACTTCAAAAT TTATACAATC ATAAATCGAA 342 ||| || | ||| ||| ||| |||| | | |||||| || | | | || | || AACAACACA- AAATCTTCAA TCAAATACAA AGTTCAAACA CTA-GC-A-- GTGAACCAAA 526 TTATATAAAT TTATAATAAA ATT-TAAGAA ATTATAACCA TAAATT 297 | || ||| | | ||||| ||| | |||| ||| |||| || ||| TCATCGAAAA GT-T-ATAAA ATTGTTAGAA ATTTCTACCA TATATT 570 hqPGS_C06HBa0046G10.1-8-_SGN-U322569- (2313 1916,1846 1795) ******************************************************************************** EST sequence 2 +strand 826 n (File: SGN-U344226+) 1 ATTGAAACAA AAGCTGGAGC TCCACCGCGG TGGCGGCCGC TCTAGAACTA GTGGATCCCC 61 CGGGCTGCAG GAATTCGGCA CGAGCTTATT GTAGATGACC AATTTTTTCT TCGAATACGA 121 AATTAAATTA CAATACACAC AAAAAAAATA TTTGAATTTT TTTTATTTAA ACTAAGGAAT 181 GAAAGAAAAA AACAAAATAA GAATAAGAAA CTCAAATTAT TATAATAAAA GAAGTCAAAA 241 AATAATTTTT GTATGAAAAA ATTAAAATAT ACCTTGAACT TTGATAGAAG AATCATATAT 301 ATCCCTAAAT ATTTTTTTTA AAAAAAAATT AGAAGTAACA AATATAAATT TAAAACTAAT 361 TTTTTAACTT TCGTTAAATG AAGGGTATAT GTGAGCCATT TTCTAACGGC AGGGGTATAT 421 GTGAGCCGTT TGTATAACGA TAAGGGCATA TATGAACCAC TTTTATTACG AGGGATATAT 481 CAGCTCTAAA TGACAAAGTT GAGAGGTATA TCAGACCCTT TTCCCTATTT TTTAAAATTT 541 CATACCATTT GAAAAAAAAT CCTATGTTCT TCTCTTTACT ATTTTTGGAC ATATCATTCA 601 TGTATCGGTA CGAGATATAT CATTGGTGGT GTACCTTGTA TTAAACAAAA TAATGGATCG 661 AAATGTGAAT GTTTCGGAAC ATAAACAACG TTTCGAGAAG CATTGTATCA AAATATGGAG 721 GGATCATTTG GGTAGGTTTG TCTTGTTTTA ACAAGGGAAT GTATTGAGAC ACAATATATA 781 CATAACGTTT AAAGGAGGGT CGAAAACCCT AAATTTTAAT TTTTAG Predicted gene structure (within gDNA segment 4396 to 1): Exon 1 2226 1789 ( 438 n); cDNA 86 543 ( 458 n); score: 0.729 Intron 1 1788 970 ( 819 n); Pd: 0.000 (s: 0.78), Pa: 0.000 (s: 0) Exon 2 969 954 ( 16 n); cDNA 544 559 ( 16 n); score: 0.750 MATCH C06HBa0046G10.1-8- SGN-U344226+ 0.729 454 0.550 C PGS_C06HBa0046G10.1-8-_SGN-U344226+ (2226 1789,969 954) Alignment (genomic DNA sequence = upper lines): TTATTGTAGA TGATAAAACT TTTTTCTTCG AATACAAAAA TCAAATTACA AT--ATA-GA 2170 |||||||||| ||| || | |||||||||| ||||| ||| | |||||||| || | | | TTATTGTAGA TGACCAA--T TTTTTCTTCG AATAC-GAAA TTAAATTACA ATACACACAA 142 AAAAAATAGT TTAATTTTTT TTCTTTAAAC TAAGGAATGA AAG--AAAAA -AAAA--AGA 2115 |||||||| | | |||||||| || ||||||| |||||||||| ||| ||||| |||| ||| AAAAAATATT TGAATTTTTT TTATTTAAAC TAAGGAATGA AAGAAAAAAA CAAAATAAGA 202 ATAAGAAACT CAAATGATTA TAATAAAAGA AGTCAAAAAA TAATTTGTGT ATGAAAAAAA 2055 |||||||||| ||||| |||| |||||||||| |||||||||| |||||| ||| ||| |||||| ATAAGAAACT CAAATTATTA TAATAAAAGA AGTCAAAAAA TAATTTTTGT ATG-AAAAAA 261 ATTAAATATA CCTTGAACTT TGATAGAAGA ATCATATATA CCCCTAAATC ATTTTTTT-- 1997 | ||||||| |||||||||| |||||||||| |||||||||| |||||||| ||||||| TTAAAATATA CCTTGAACTT TGATAGAAGA ATCATATATA TCCCTAAATA TTTTTTTTAA 321 -------TT- ----TAA-AA A-AT-AATTT AAAACTAATT TTTTAACTTC CGTTAAATGA 1952 || ||| || | || ||||| |||||||||| ||||||||| |||||||||| AAAAAAATTA GAAGTAACAA ATATAAATTT AAAACTAATT TTTTAACTTT CGTTAAATGA 381 AGCGTATATG TAAGCTCATT TTGTAAGGAA AGGGGTATAT GTGAGTCATT TCTATAACAG 1892 || ||||||| | ||| |||| || ||| | |||||||||| ||||| | || | |||||| AGGGTATATG TGAGC-CATT TTCTAACGGC AGGGGTATAT GTGAGCCGTT TGTATAACGA 440 TAAAGGTATA TATGAGTCAC TTTCAATTCG AGGAATATAT CAAACCCAAA TGACAAAGTT 1832 ||| || ||| ||||| ||| ||| | | || ||| |||||| || | ||| |||||||||| TAAGGGCATA TATGAACCAC TTTTATTACG AGGGATATAT CAGCTCTAAA TGACAAAGTT 500 GGGTGGTATA TCAAACCTTT TTTCCTAACT TTAATGATTT TATTTTGACA CATTACTGGA 1772 | | |||||| ||| ||| || || |||| | || | |||| || GAGAGGTATA TCAGACCCTT TTCCCTATTT TTTAAAATTT CAT....... .......... 543 GTCTTTGCAT GTTGCATCTC CAAACTTACT TTTTATTTTA CTCTCTAAAT ATAAAATTAT 1712 .......... .......... .......... .......... .......... .......... 543 TTATTTATTC AAATAACTAA CTTCAATTTA ATTTCTTATT TATTCTCAAA AAAGAAATCT 1652 .......... .......... .......... .......... .......... .......... 543 TTTTTCTTTT TTTGATATTA TATTACTATT TCTATTTTAT TTTTATTTTC TTATTTCTTA 1592 .......... .......... .......... .......... .......... .......... 543 ATATATATTA TTACTTCTTT TTGCAAATAA TCACTCTATA CTCTATATTA TCTTTATGTA 1532 .......... .......... .......... .......... .......... .......... 543 ATATAAAATT TTGTTCTTCT TTGAATTCTT CGTTTAACAA TTATATTTTA TTTTAAATTT 1472 .......... .......... .......... .......... .......... .......... 543 CTAAATAACA TATATTACCA TAGATATTAT ATATACTACA TATTAATGAA CAACTTAAAT 1412 .......... .......... .......... .......... .......... .......... 543 AAAGTGAAAT TACTGATGAA ATACATAATA AATATTGTAT AATGTAAAAT TTACATAAAT 1352 .......... .......... .......... .......... .......... .......... 543 ATTCAACTTT CAAGACTATT ATGTTGCTTT TGTAACTGTT CTATTAATGT ATACCGTAGT 1292 .......... .......... .......... .......... .......... .......... 543 TCAAAATGAA CAATTTTTTG TCATTATTTT ACGCGTATCT AATAATTGTT TAAATTAACA 1232 .......... .......... .......... .......... .......... .......... 543 ATTTAATTTT GTATCCAATT GTTTTGTGTA ATAATTTACT CCCTATATTT CATTTTGAAC 1172 .......... .......... .......... .......... .......... .......... 543 TATTGCATCA AATATTTTCA TATTTGAATA TAAGATGAAA TTGTTAATTG AAACAATTTA 1112 .......... .......... .......... .......... .......... .......... 543 TTTGATATCC TCCAAATATA GAGAATAGAG AGTAAATTTA AACTATTTTG TGTACTAATT 1052 .......... .......... .......... .......... .......... .......... 543 ATTTCATCCA TTTTGTATTT TTTTCCCTCT TCTTTTCCTT CGCCAAATAG TTGTGGAGTG 992 .......... .......... .......... .......... .......... .......... 543 TTTGATTTCA AAATTATGTA TGAGTATCTA AAAAAAAA 954 | || | |||||||| .......... .......... ..ACCATTTG AAAAAAAA 559 hqPGS_C06HBa0046G10.1-8-_SGN-U344226+ (2226 1789) Total number of EST alignments reported: 2 ________________________________________________________________________________ Predicted gene locations (1) in segment 1 to 5464: PGL 1 (- strand): 2313 1789 AGS-1 (2226 1789) SCR (e 0.729) Exon 1 2226 1789 ( 438 n); score: 0.729 PGS (2226 1789) SGN-U344226+ 3-phase translation of AGS-1 (-strand): . . . . . . 2226 TTATTGTAGATGATAAAACTTTTTTCTTCGAATACAAAAATCAAATTACAATATAGAAAA L L - M I K L F S S N T K I K L Q Y R K Y C R - - N F F L R I Q K S N Y N I E K I V D D K T F F F E Y K N Q I T I - K . . . . . . 2166 AAATAGTTTAATTTTTTTTCTTTAAACTAAGGAATGAAAGAAAAAAAAAAGAATAAGAAA K - F N F F S L N - G M K E K K K N K K N S L I F F L - T K E - K K K K R I R N K I V - F F F F K L R N E R K K K E - E . . . . . . 2106 CTCAAATGATTATAATAAAAGAAGTCAAAAAATAATTTGTGTATGAAAAAAAATTAAATA L K - L - - K K S K N N L C M K K N - I S N D Y N K R S Q K I I C V - K K I K Y T Q M I I I K E V K K - F V Y E K K L N . . . . . . 2046 TACCTTGAACTTTGATAGAAGAATCATATATACCCCTAAATCATTTTTTTTTTAAAAAAT Y L E L - - K N H I Y P - I I F F L K N T L N F D R R I I Y T P K S F F F - K I I P - T L I E E S Y I P L N H F F F K K . . . . . . 1986 AATTTAAAACTAATTTTTTAACTTCCGTTAAATGAAGCGTATATGTAAGCTCATTTTGTA N L K L I F - L P L N E A Y M - A H F V I - N - F F N F R - M K R I C K L I L - - F K T N F L T S V K - S V Y V S S F C . . . . . . 1926 AGGAAAGGGGTATATGTGAGTCATTTCTATAACAGTAAAGGTATATATGAGTCACTTTCA R K G V Y V S H F Y N S K G I Y E S L S G K G Y M - V I S I T V K V Y M S H F Q K E R G I C E S F L - Q - R Y I - V T F . . . . . . 1866 ATTCGAGGAATATATCAAACCCAAATGACAAAGTTGGGTGGTATATCAAACCTTTTTTCC I R G I Y Q T Q M T K L G G I S N L F S F E E Y I K P K - Q S W V V Y Q T F F P N S R N I S N P N D K V G W Y I K P F F . . 1806 TAACTTTAATGATTTTAT - L - - F Y N F N D F L T L M I L Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-1 (+strand): . . . . . . 1789 ATAAAATCATTAAAGTTAGGAAAAAAGGTTTGATATACCACCCAACTTTGTCATTTGGGT I K S L K L G K K V - Y T T Q L C H L G - N H - S - E K R F D I P P N F V I W V K I I K V R K K G L I Y H P T L S F G . . . . . . 1849 TTGATATATTCCTCGAATTGAAAGTGACTCATATATACCTTTACTGTTATAGAAATGACT L I Y S S N - K - L I Y T F T V I E M T - Y I P R I E S D S Y I P L L L - K - L F D I F L E L K V T H I Y L Y C Y R N D . . . . . . 1909 CACATATACCCCTTTCCTTACAAAATGAGCTTACATATACGCTTCATTTAACGGAAGTTA H I Y P F P Y K M S L H I R F I - R K L T Y T P F L T K - A Y I Y A S F N G S - S H I P L S L Q N E L T Y T L H L T E V . . . . . . 1969 AAAAATTAGTTTTAAATTATTTTTTAAAAAAAAAATGATTTAGGGGTATATATGATTCTT K N - F - I I F - K K N D L G V Y M I L K I S F K L F F K K K M I - G Y I - F F K K L V L N Y F L K K K - F R G I Y D S . . . . . . 2029 CTATCAAAGTTCAAGGTATATTTAATTTTTTTTCATACACAAATTATTTTTTGACTTCTT L S K F K V Y L I F F H T Q I I F - L L Y Q S S R Y I - F F F I H K L F F D F F S I K V Q G I F N F F S Y T N Y F L T S . . . . . . 2089 TTATTATAATCATTTGAGTTTCTTATTCTTTTTTTTTTCTTTCATTCCTTAGTTTAAAGA L L - S F E F L I L F F F F H S L V - R Y Y N H L S F L F F F F S F I P - F K E F I I I I - V S Y S F F F L S F L S L K . . . . . . 2149 AAAAAAATTAAACTATTTTTTTCTATATTGTAATTTGATTTTTGTATTCGAAGAAAAAAG K K I K L F F S I L - F D F C I R R K K K K L N Y F F L Y C N L I F V F E E K S K K N - T I F F Y I V I - F L Y S K K K . . 2209 TTTTATCATCTACAATAA F Y H L Q - F I I Y N V L S S T I Maximal non-overlapping open reading frames (>= 64 codons): >C06HBa0046G10.1-8+_PGL-1_AGS-1_PPS_1 (1791 2006) (frame '0'; 213 bp, 71 residues) 1 KIIKVRKKGL IYHPTLSFGF DIFLELKVTH IYLYCYRNDS HIPLSLQNEL TYTLHLTEVK 61 KLVLNYFLKK K- AGS-2 (2313 1916,1846 1795) SCR (e 0.795 d 0.000 a 0.000,e 0.731) Exon 1 2313 1916 ( 398 n); score: 0.795 Intron 1 1915 1847 ( 69 n); Pd: 0.000 Pa: 0.000 Exon 2 1846 1795 ( 52 n); score: 0.731 PGS (2313 1916,1846 1795) SGN-U322569- 3-phase translation of AGS-2 (-strand): . . . . . . 2313 TTTTATTTTTTTTCTTTCAATGACTAATTTAAAATTATTATTTTGATAATTAAATTTATT F Y F F S F N D - F K I I I L I I K F I F I F F L S M T N L K L L F - - L N L F L F F F F Q - L I - N Y Y F D N - I Y . . . . . . 2253 TATATTTCACTAATATTCTTGTAAAACTTATTGTAGATGATAAAACTTTTTTCTTCGAAT Y I S L I F L - N L L - M I K L F S S N I F H - Y S C K T Y C R - - N F F L R I L Y F T N I L V K L I V D D K T F F F E . . . . . . 2193 ACAAAAATCAAATTACAATATAGAAAAAAATAGTTTAATTTTTTTTCTTTAAACTAAGGA T K I K L Q Y R K K - F N F F S L N - G Q K S N Y N I E K N S L I F F L - T K E Y K N Q I T I - K K I V - F F F F K L R . . . . . . 2133 ATGAAAGAAAAAAAAAAGAATAAGAAACTCAAATGATTATAATAAAAGAAGTCAAAAAAT M K E K K K N K K L K - L - - K K S K N - K K K K R I R N S N D Y N K R S Q K I N E R K K K E - E T Q M I I I K E V K K . . . . . . 2073 AATTTGTGTATGAAAAAAAATTAAATATACCTTGAACTTTGATAGAAGAATCATATATAC N L C M K K N - I Y L E L - - K N H I Y I C V - K K I K Y T L N F D R R I I Y T - F V Y E K K L N I P - T L I E E S Y I . . . . . . 2013 CCCTAAATCATTTTTTTTTTAAAAAATAATTTAAAACTAATTTTTTAACTTCCGTTAAAT P - I I F F L K N N L K L I F - L P L N P K S F F F - K I I - N - F F N F R - M P L N H F F F K K - F K T N F L T S V K . . . . : . . 1953 GAAGCGTATATGTAAGCTCATTTTGTAAGGAAAGGGGT : CCAAATGACAAAGTTGGGTGGT E A Y M - A H F V R K G V : Q M T K L G G K R I C K L I L - G K G : S K - Q S W V V - S V Y V S S F C K E R G : P N D K V G W . . . 1824 ATATCAAACCTTTTTTCCTAACTTTAATGA I S N L F S - L - - Y Q T F F P N F N Y I K P F F L T L M Maximal non-overlapping open reading frames (>= 64 codons): none ... finished at: Mon Jul 24 23:35:58 2006