GeneSeqer. Version of March 12, 2006. Date run: Mon Aug 28 21:48:23 2006 (Bayesian) Splice site model (species): Arabidopsis thaliana Fast search parameters: MinMatchLen 16, MinQualityHSP 30, MinQualityCHAIN 50. Total number of ESTs: 175665 Total sequence length: 93213537 Minimum sequence length: 89 Maximum sequence length: 1082 Length distribution (number of sequences of specified length): < 100: 1 < 200: 2188 < 300: 8544 < 400: 20465 < 500: 39499 < 600: 49432 < 700: 32872 < 800: 19308 < 900: 3155 < 1000: 193 >=1000: 8 Input file : /tmp/bac-submission-temp-Kw6uM/C06HBa0054K13/C06HBa0054K13.seq.screen ________________________________________________________________________________ Sequence 1: C06HBa0054K13.1-1, from 1 to 10775, both strands analyzed. ... started at: Mon Aug 28 22:09:03 2006 EST library file: /tmp/cxgn-bacpublish-resources-LF1h7Z/sgn_ests; matching gDNA +strand ... ... found all matches, elapsed seconds = 5 ... matches indexed, elapsed seconds = 5 HitsTableSize = 25 EST library file: /tmp/cxgn-bacpublish-resources-LF1h7Z/sgn_ests; matching gDNA -strand ... ... found all matches, elapsed seconds = 3 ... matches indexed, elapsed seconds = 3 HitsTableSize = 13 ******************************************************************************** EST sequence 6 +strand 744 n (File: SGN-E551806+) 1 CAAAGTATAT TAAGGACCAT GTGGAACCTG ATGCCATTGC TGCTTACTTG AAGGATTACA 61 AGGAAGGAAA ACTGAAGCCA CATGTGAAGT CAGAGCCCAT CCCTGAAGTC AATGACGAAC 121 CTGTTAAGGT GGTTGTTAGG GATACCCTCC AGGATATGGT TTACAAATCG GGAAAAAATG 181 TGCTGTTAGA GTTCTATGCA CCTTGGTGTG GCCACTGCAA GAGTCTGGCT CCAATTTTGG 241 ATGAAGTGGC TGTATCATTT GAAAGCGATC CTGATGTTCT CATTGCAAAA CTGGACGCAA 301 CCGCAAATGA TCTCCCGAAA GGTGACTTTG ATGTTCAGGG ATTCCCTACT ATGTACTTCA 361 GATCCGCCTC TGGTAACTTG TCACAGTACA ATGGTGAGAG AACAAAAGAG GCTATCATCG 421 AATTCATCGA GAAGAATCGT GGCAAGCCTG CTCAGTCAGA CTCTGCCAAA GTCGATTCAG 481 CAAAGGATGA ACTTTAGAGG ACTCTAGGAA CATTGTGTAC TGGTGGATTC AAGTTTTGTT 541 GGAAGCATTG TGTTTCTGGT GAATTCGACC TCCCACCGGA CTACTGCTCT CTCCCAACGC 601 TTCCGTTGTA GTTTTTGGAG CTTTTCAGCG CCAATAAAAC GGTTGTATGT ATCCATTTTG 661 TGTATCGAAT GTAGCTGGAT TATGAGTTTA TATTATATCT ATTGAGAAGT TCTCCAAAAA 721 NAAAAAAAAA AAAAAAAAAA AAAA Predicted gene structure (within gDNA segment 1 to 1830): Exon 1 1 108 ( 108 n); cDNA 186 293 ( 108 n); score: 1.000 Intron 1 109 428 ( 320 n); Pd: 1.000 (s: 1.00), Pa: 0.935 (s: 1.00) Exon 2 429 634 ( 206 n); cDNA 294 499 ( 206 n); score: 1.000 Intron 2 635 732 ( 98 n); Pd: 0.988 (s: 1.00), Pa: 0.846 (s: 1.00) Exon 3 733 949 ( 217 n); cDNA 500 716 ( 217 n); score: 1.000 Intron 3 950 1026 ( 77 n); Pd: 0.000 (s: 1.00), Pa: 0.786 (s: 0) Exon 4 1027 1054 ( 28 n); cDNA 717 744 ( 28 n); score: 0.607 MATCH C06HBa0054K13.1-1+ SGN-E551806+ 1.000 559 0.751 C PGS_C06HBa0054K13.1-1+_SGN-E551806+ (1 108,429 634,733 949,1027 1054) Alignment (genomic DNA sequence = upper lines): TTAGAGTTCT ATGCACCTTG GTGTGGCCAC TGCAAGAGTC TGGCTCCAAT TTTGGATGAA 60 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTAGAGTTCT ATGCACCTTG GTGTGGCCAC TGCAAGAGTC TGGCTCCAAT TTTGGATGAA 245 GTGGCTGTAT CATTTGAAAG CGATCCTGAT GTTCTCATTG CAAAACTGGT AAGAACTTTT 120 |||||||||| |||||||||| |||||||||| |||||||||| |||||||| GTGGCTGTAT CATTTGAAAG CGATCCTGAT GTTCTCATTG CAAAACTG.. .......... 293 TTCATAAACT AAACATGGAT ATTTGATGCA TGTATCTACT TCATCCTTTG TTACATTAAG 180 .......... .......... .......... .......... .......... .......... 293 TAACGGCATA ATAATCAAGA AAGAATGTGT AGAATTAGAA TCGGGTTTTT AGTATAAAAA 240 .......... .......... .......... .......... .......... .......... 293 TCAGAAAGAA CGGGGTGGAC ATTTTATCTT TGATGTTATG GATTTCGTTG TTAGAGAGAT 300 .......... .......... .......... .......... .......... .......... 293 TTTTAGTAGA AAACATCTGT AAAGTGTATC AAAAAAGAAG GTTTGTATGG CTTAAACACG 360 .......... .......... .......... .......... .......... .......... 293 ATTAGCAGTT GTAATGCACA GGACATGTAT TTGTTGTCAT TTCCTCTCAC CTGCTTCCTC 420 .......... .......... .......... .......... .......... .......... 293 ATTTACAGGA CGCAACCGCA AATGATCTCC CGAAAGGTGA CTTTGATGTT CAGGGATTCC 480 || |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ........GA CGCAACCGCA AATGATCTCC CGAAAGGTGA CTTTGATGTT CAGGGATTCC 345 CTACTATGTA CTTCAGATCC GCCTCTGGTA ACTTGTCACA GTACAATGGT GAGAGAACAA 540 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTACTATGTA CTTCAGATCC GCCTCTGGTA ACTTGTCACA GTACAATGGT GAGAGAACAA 405 AAGAGGCTAT CATCGAATTC ATCGAGAAGA ATCGTGGCAA GCCTGCTCAG TCAGACTCTG 600 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGAGGCTAT CATCGAATTC ATCGAGAAGA ATCGTGGCAA GCCTGCTCAG TCAGACTCTG 465 CCAAAGTCGA TTCAGCAAAG GATGAACTTT AGAGGTTTGG TTCTCTTCCT TAAAGCATCA 660 |||||||||| |||||||||| |||||||||| |||| CCAAAGTCGA TTCAGCAAAG GATGAACTTT AGAG...... .......... .......... 499 ATTGTGATAT CTGCCATTAT TGGTTCTTTG TGCTACAGTA ATTGTAATTT ATATTGATCT 720 .......... .......... .......... .......... .......... .......... 499 CCTCTTATTC AGGACTCTAG GAACATTGTG TACTGGTGGA TTCAAGTTTT GTTGGAAGCA 780 |||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ..GACTCTAG GAACATTGTG TACTGGTGGA TTCAAGTTTT GTTGGAAGCA 547 TTGTGTTTCT GGTGAATTCG ACCTCCCACC GGACTACTGC TCTCTCCCAA CGCTTCCGTT 840 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGTGTTTCT GGTGAATTCG ACCTCCCACC GGACTACTGC TCTCTCCCAA CGCTTCCGTT 607 GTAGTTTTTG GAGCTTTTCA GCGCCAATAA AACGGTTGTA TGTATCCATT TTGTGTATCG 900 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTAGTTTTTG GAGCTTTTCA GCGCCAATAA AACGGTTGTA TGTATCCATT TTGTGTATCG 667 AATGTAGCTG GATTATGAGT TTATATTATA TCTATTGAGA AGTTCTCCAA CTTTATAGTA 960 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| AATGTAGCTG GATTATGAGT TTATATTATA TCTATTGAGA AGTTCTCCA. .......... 716 TCAGCAGTTG AAGTTATCTT CTTTGTCCCA GAATGCTACT GTTGGAATGT ATGCCTCCTG 1020 .......... .......... .......... .......... .......... .......... 716 TTGCAGTAAA TAATGATACA CAATAATTAA AGAA 1054 ||| || | | | || || || | || ......AAAA NAAAAAAAAA AAAAAAAAAA AAAA 744 hqPGS_C06HBa0054K13.1-1+_SGN-E551806+ (1 108,429 634,733 949,1027 1054) ******************************************************************************** EST sequence 16 +strand 604 n (File: SGN-E314484+) 1 GTTGTTAGGG ATACCCTCCA GGATATGGTT TACAAATCGG GAAAAAATGT GCTGTTAGAG 61 TTCTATGCAC CTTGGTGTGG CCACTGCAAG AGTCTGGCTC CAATTTTGGA TGAAGTGGCT 121 GTATCATTTG AAAGCGATCC TGATGTTCTC ATTGCAAAAC TGGACGCAAC CGCAAATGAT 181 CTCCCGAAAG GTGACTTTGA TGTTCAGGGA TTCCCTACTA TGTACTTCAG ATCCGCCTCT 241 GGTAACTTGT CACAGTACAA TGGTGAGAGA ACAAAAGAGG CTATCATCGA ATTCATCGAG 301 AAGAATCGTG GCAAGCCTGC TCAGTCAGAC TCTGCCAAAG TCGATTCAGC AAAGGATGAA 361 CTTTAGAGGA CTCTAGGAAC ATTGTGTACT GGTGGATTCA AGTTTTGTTG GAAGCATTGT 421 GTTTCTGGTG AATTCGACCT CCCACCGGAC TACTGCTCTC TCCCAACGCT TCCGTTGTAG 481 TTTTTGGAGC TTTTCAGCGC CAATAAAACG GTTGTATGTA TCCATTTTGT GTATCGAATG 541 TAGCTGGATT ATGAGTTTAT ATTATATCTA TTGAGAAGTT CTCCAACTTT ATAGTATCAG 601 CAGT Predicted gene structure (within gDNA segment 1 to 1578): Exon 1 1 108 ( 108 n); cDNA 55 162 ( 108 n); score: 1.000 Intron 1 109 428 ( 320 n); Pd: 1.000 (s: 1.00), Pa: 0.935 (s: 1.00) Exon 2 429 634 ( 206 n); cDNA 163 368 ( 206 n); score: 1.000 Intron 2 635 732 ( 98 n); Pd: 0.988 (s: 1.00), Pa: 0.846 (s: 1.00) Exon 3 733 968 ( 236 n); cDNA 369 604 ( 236 n); score: 1.000 MATCH C06HBa0054K13.1-1+ SGN-E314484+ 1.000 550 0.911 C PGS_C06HBa0054K13.1-1+_SGN-E314484+ (1 108,429 634,733 968) Alignment (genomic DNA sequence = upper lines): TTAGAGTTCT ATGCACCTTG GTGTGGCCAC TGCAAGAGTC TGGCTCCAAT TTTGGATGAA 60 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTAGAGTTCT ATGCACCTTG GTGTGGCCAC TGCAAGAGTC TGGCTCCAAT TTTGGATGAA 114 GTGGCTGTAT CATTTGAAAG CGATCCTGAT GTTCTCATTG CAAAACTGGT AAGAACTTTT 120 |||||||||| |||||||||| |||||||||| |||||||||| |||||||| GTGGCTGTAT CATTTGAAAG CGATCCTGAT GTTCTCATTG CAAAACTG.. .......... 162 TTCATAAACT AAACATGGAT ATTTGATGCA TGTATCTACT TCATCCTTTG TTACATTAAG 180 .......... .......... .......... .......... .......... .......... 162 TAACGGCATA ATAATCAAGA AAGAATGTGT AGAATTAGAA TCGGGTTTTT AGTATAAAAA 240 .......... .......... .......... .......... .......... .......... 162 TCAGAAAGAA CGGGGTGGAC ATTTTATCTT TGATGTTATG GATTTCGTTG TTAGAGAGAT 300 .......... .......... .......... .......... .......... .......... 162 TTTTAGTAGA AAACATCTGT AAAGTGTATC AAAAAAGAAG GTTTGTATGG CTTAAACACG 360 .......... .......... .......... .......... .......... .......... 162 ATTAGCAGTT GTAATGCACA GGACATGTAT TTGTTGTCAT TTCCTCTCAC CTGCTTCCTC 420 .......... .......... .......... .......... .......... .......... 162 ATTTACAGGA CGCAACCGCA AATGATCTCC CGAAAGGTGA CTTTGATGTT CAGGGATTCC 480 || |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ........GA CGCAACCGCA AATGATCTCC CGAAAGGTGA CTTTGATGTT CAGGGATTCC 214 CTACTATGTA CTTCAGATCC GCCTCTGGTA ACTTGTCACA GTACAATGGT GAGAGAACAA 540 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTACTATGTA CTTCAGATCC GCCTCTGGTA ACTTGTCACA GTACAATGGT GAGAGAACAA 274 AAGAGGCTAT CATCGAATTC ATCGAGAAGA ATCGTGGCAA GCCTGCTCAG TCAGACTCTG 600 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGAGGCTAT CATCGAATTC ATCGAGAAGA ATCGTGGCAA GCCTGCTCAG TCAGACTCTG 334 CCAAAGTCGA TTCAGCAAAG GATGAACTTT AGAGGTTTGG TTCTCTTCCT TAAAGCATCA 660 |||||||||| |||||||||| |||||||||| |||| CCAAAGTCGA TTCAGCAAAG GATGAACTTT AGAG...... .......... .......... 368 ATTGTGATAT CTGCCATTAT TGGTTCTTTG TGCTACAGTA ATTGTAATTT ATATTGATCT 720 .......... .......... .......... .......... .......... .......... 368 CCTCTTATTC AGGACTCTAG GAACATTGTG TACTGGTGGA TTCAAGTTTT GTTGGAAGCA 780 |||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ..GACTCTAG GAACATTGTG TACTGGTGGA TTCAAGTTTT GTTGGAAGCA 416 TTGTGTTTCT GGTGAATTCG ACCTCCCACC GGACTACTGC TCTCTCCCAA CGCTTCCGTT 840 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGTGTTTCT GGTGAATTCG ACCTCCCACC GGACTACTGC TCTCTCCCAA CGCTTCCGTT 476 GTAGTTTTTG GAGCTTTTCA GCGCCAATAA AACGGTTGTA TGTATCCATT TTGTGTATCG 900 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTAGTTTTTG GAGCTTTTCA GCGCCAATAA AACGGTTGTA TGTATCCATT TTGTGTATCG 536 AATGTAGCTG GATTATGAGT TTATATTATA TCTATTGAGA AGTTCTCCAA CTTTATAGTA 960 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATGTAGCTG GATTATGAGT TTATATTATA TCTATTGAGA AGTTCTCCAA CTTTATAGTA 596 TCAGCAGT 968 |||||||| TCAGCAGT 604 hqPGS_C06HBa0054K13.1-1+_SGN-E314484+ (1 108,429 634,733 968) ******************************************************************************** EST sequence 32 -strand 637 n (File: SGN-E246249-) 1 GAGCCCATCC CTGAAGTCAA TGACGAACCT GTTAAGGTGG TTGTTAGGGA TACCCTCCAG 61 GATATGGTTT ACAAATCGGG AAAAAATGTG CTGTTAGAGT TCTATGCACC TTGGTGTGGC 121 CACTGCAAGA GTCTGGCTCC AATTTTGGAT GAAGTGGCTG TATCATTTGA AAGCGATCCT 181 GATGTTCTCA TTGCAAAACT GGACGCAACC GCAAATGATC TCCCGAAAGG TGACTTTGAT 241 GTTCAGGGAT TCCCTACTAT GTACTTCAGA TCCGCCTCTG GTAACTTGTC ACAGTACAAT 301 GGTGAGAGAA CAAAAGAGGC TATCATCGAA TTCATCGAGA AGAATCGTGG CAAGCCTGCT 361 CAGTCAGACT CTGCCAAAGT CGATTCAGCA AAGGATGAAC TTTAGAGGAC TCTAGGAACA 421 TTGTGTACTG GTGGATTCAA GTTTTGTTGG AAGCATTGTG TTTCTGGTGA ATTCGACCTC 481 CCACCGGACT ACTGCTCTCT CCCAACGCTT CCGTTGTAGT TTTTGGAGCT TTTCAGCGCC 541 AATAAAACGG TTGTATGTAT CCATTTTGTG TATCGAATGT AGCTGGATTA TGAGTTTATA 601 TTATATCTAT TGAGAAGTTC TCCAACTTAA AAAAAAA Predicted gene structure (within gDNA segment 1 to 1643): Exon 1 1 108 ( 108 n); cDNA 94 201 ( 108 n); score: 1.000 Intron 1 109 428 ( 320 n); Pd: 1.000 (s: 1.00), Pa: 0.935 (s: 1.00) Exon 2 429 634 ( 206 n); cDNA 202 407 ( 206 n); score: 1.000 Intron 2 635 732 ( 98 n); Pd: 0.988 (s: 1.00), Pa: 0.846 (s: 1.00) Exon 3 733 953 ( 221 n); cDNA 408 628 ( 221 n); score: 1.000 MATCH C06HBa0054K13.1-1+ SGN-E246249- 1.000 535 0.840 C PGS_C06HBa0054K13.1-1+_SGN-E246249- (1 108,429 634,733 953) Alignment (genomic DNA sequence = upper lines): TTAGAGTTCT ATGCACCTTG GTGTGGCCAC TGCAAGAGTC TGGCTCCAAT TTTGGATGAA 60 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTAGAGTTCT ATGCACCTTG GTGTGGCCAC TGCAAGAGTC TGGCTCCAAT TTTGGATGAA 153 GTGGCTGTAT CATTTGAAAG CGATCCTGAT GTTCTCATTG CAAAACTGGT AAGAACTTTT 120 |||||||||| |||||||||| |||||||||| |||||||||| |||||||| GTGGCTGTAT CATTTGAAAG CGATCCTGAT GTTCTCATTG CAAAACTG.. .......... 201 TTCATAAACT AAACATGGAT ATTTGATGCA TGTATCTACT TCATCCTTTG TTACATTAAG 180 .......... .......... .......... .......... .......... .......... 201 TAACGGCATA ATAATCAAGA AAGAATGTGT AGAATTAGAA TCGGGTTTTT AGTATAAAAA 240 .......... .......... .......... .......... .......... .......... 201 TCAGAAAGAA CGGGGTGGAC ATTTTATCTT TGATGTTATG GATTTCGTTG TTAGAGAGAT 300 .......... .......... .......... .......... .......... .......... 201 TTTTAGTAGA AAACATCTGT AAAGTGTATC AAAAAAGAAG GTTTGTATGG CTTAAACACG 360 .......... .......... .......... .......... .......... .......... 201 ATTAGCAGTT GTAATGCACA GGACATGTAT TTGTTGTCAT TTCCTCTCAC CTGCTTCCTC 420 .......... .......... .......... .......... .......... .......... 201 ATTTACAGGA CGCAACCGCA AATGATCTCC CGAAAGGTGA CTTTGATGTT CAGGGATTCC 480 || |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ........GA CGCAACCGCA AATGATCTCC CGAAAGGTGA CTTTGATGTT CAGGGATTCC 253 CTACTATGTA CTTCAGATCC GCCTCTGGTA ACTTGTCACA GTACAATGGT GAGAGAACAA 540 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTACTATGTA CTTCAGATCC GCCTCTGGTA ACTTGTCACA GTACAATGGT GAGAGAACAA 313 AAGAGGCTAT CATCGAATTC ATCGAGAAGA ATCGTGGCAA GCCTGCTCAG TCAGACTCTG 600 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGAGGCTAT CATCGAATTC ATCGAGAAGA ATCGTGGCAA GCCTGCTCAG TCAGACTCTG 373 CCAAAGTCGA TTCAGCAAAG GATGAACTTT AGAGGTTTGG TTCTCTTCCT TAAAGCATCA 660 |||||||||| |||||||||| |||||||||| |||| CCAAAGTCGA TTCAGCAAAG GATGAACTTT AGAG...... .......... .......... 407 ATTGTGATAT CTGCCATTAT TGGTTCTTTG TGCTACAGTA ATTGTAATTT ATATTGATCT 720 .......... .......... .......... .......... .......... .......... 407 CCTCTTATTC AGGACTCTAG GAACATTGTG TACTGGTGGA TTCAAGTTTT GTTGGAAGCA 780 |||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ..GACTCTAG GAACATTGTG TACTGGTGGA TTCAAGTTTT GTTGGAAGCA 455 TTGTGTTTCT GGTGAATTCG ACCTCCCACC GGACTACTGC TCTCTCCCAA CGCTTCCGTT 840 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGTGTTTCT GGTGAATTCG ACCTCCCACC GGACTACTGC TCTCTCCCAA CGCTTCCGTT 515 GTAGTTTTTG GAGCTTTTCA GCGCCAATAA AACGGTTGTA TGTATCCATT TTGTGTATCG 900 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTAGTTTTTG GAGCTTTTCA GCGCCAATAA AACGGTTGTA TGTATCCATT TTGTGTATCG 575 AATGTAGCTG GATTATGAGT TTATATTATA TCTATTGAGA AGTTCTCCAA CTT 953 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||| AATGTAGCTG GATTATGAGT TTATATTATA TCTATTGAGA AGTTCTCCAA CTT 628 hqPGS_C06HBa0054K13.1-1+_SGN-E246249- (1 108,429 634,733 953) ******************************************************************************** EST sequence 33 -strand 804 n (File: SGN-E543832-) 1 GCTGGTCAAG GTGCTTTTGA GTACTTCGGA CTGAAGCCGG AACAGGCACC TGTGATCATC 61 ATAATGGACG CTGATGAACA AAAGTATATT AAGGACCATG TGGAACCTGA TGCCATTGCT 121 GCTTACTTGA AGGATTACAA GGAAGGAAAA CTGAAGCCAC ATGTGAAGTC AGAGCCCATC 181 CCTGAAGTCA ATGACGAACC TGTTAAGGTG GTTGTTAGGG ATACCCTCCA GGATATGGTT 241 TACAAATCGG GAAAAAATGT GCTGTTAGAG TTCTATGCAC CTTGGTGTGG CCACTGCAAG 301 AGTCTGGCTC CAATTTTGGA TGAAGTGGCT GTATCATTTG AAAGCGATCC TGATGTTCTC 361 ATTGCAAAAC TGGACGCAAC CGCAAATGAT CTCCCGAAAG GTGACTTTGA TGTTCAGGGA 421 TTCCCTACTA TGTACTTCAG ATCCGCCTCT GGTAACTTGT CACAGTACAA TGGTGAGAGA 481 ACAAAAGAGG CTATCATCGA ATTCATCGAG AAGAATCGTG GCAAGCCTGC TCAGTCAGAC 541 TCTGCCAAAG TCGATTCAGC AAAGGATGAA CTTTAGAGGA CTCTAGGAAC ATTGTGTACT 601 GGTGGATTCA AGTTTTGTTG GAAGCATTGT GTTTCTGGTG AATTCGACCT CCCACCGGAC 661 TACTGCTCTC TCCCAACGCT TCCGTTGTAG TTTTTGGAGC TTTTCAGCGC CAATAAAACG 721 GTTGTATGTA TCCATTTTGT GTATCGAATG TAGCTGGATT ATGAGTTTAT ATTATATCTA 781 TTGAGAAGTT CTCCAAAAAA AAAA Predicted gene structure (within gDNA segment 1 to 1630): Exon 1 1 108 ( 108 n); cDNA 265 372 ( 108 n); score: 1.000 Intron 1 109 428 ( 320 n); Pd: 1.000 (s: 1.00), Pa: 0.935 (s: 1.00) Exon 2 429 634 ( 206 n); cDNA 373 578 ( 206 n); score: 1.000 Intron 2 635 732 ( 98 n); Pd: 0.988 (s: 1.00), Pa: 0.846 (s: 1.00) Exon 3 733 950 ( 218 n); cDNA 579 796 ( 218 n); score: 1.000 MATCH C06HBa0054K13.1-1+ SGN-E543832- 1.000 532 0.662 C PGS_C06HBa0054K13.1-1+_SGN-E543832- (1 108,429 634,733 950) Alignment (genomic DNA sequence = upper lines): TTAGAGTTCT ATGCACCTTG GTGTGGCCAC TGCAAGAGTC TGGCTCCAAT TTTGGATGAA 60 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTAGAGTTCT ATGCACCTTG GTGTGGCCAC TGCAAGAGTC TGGCTCCAAT TTTGGATGAA 324 GTGGCTGTAT CATTTGAAAG CGATCCTGAT GTTCTCATTG CAAAACTGGT AAGAACTTTT 120 |||||||||| |||||||||| |||||||||| |||||||||| |||||||| GTGGCTGTAT CATTTGAAAG CGATCCTGAT GTTCTCATTG CAAAACTG.. .......... 372 TTCATAAACT AAACATGGAT ATTTGATGCA TGTATCTACT TCATCCTTTG TTACATTAAG 180 .......... .......... .......... .......... .......... .......... 372 TAACGGCATA ATAATCAAGA AAGAATGTGT AGAATTAGAA TCGGGTTTTT AGTATAAAAA 240 .......... .......... .......... .......... .......... .......... 372 TCAGAAAGAA CGGGGTGGAC ATTTTATCTT TGATGTTATG GATTTCGTTG TTAGAGAGAT 300 .......... .......... .......... .......... .......... .......... 372 TTTTAGTAGA AAACATCTGT AAAGTGTATC AAAAAAGAAG GTTTGTATGG CTTAAACACG 360 .......... .......... .......... .......... .......... .......... 372 ATTAGCAGTT GTAATGCACA GGACATGTAT TTGTTGTCAT TTCCTCTCAC CTGCTTCCTC 420 .......... .......... .......... .......... .......... .......... 372 ATTTACAGGA CGCAACCGCA AATGATCTCC CGAAAGGTGA CTTTGATGTT CAGGGATTCC 480 || |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ........GA CGCAACCGCA AATGATCTCC CGAAAGGTGA CTTTGATGTT CAGGGATTCC 424 CTACTATGTA CTTCAGATCC GCCTCTGGTA ACTTGTCACA GTACAATGGT GAGAGAACAA 540 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTACTATGTA CTTCAGATCC GCCTCTGGTA ACTTGTCACA GTACAATGGT GAGAGAACAA 484 AAGAGGCTAT CATCGAATTC ATCGAGAAGA ATCGTGGCAA GCCTGCTCAG TCAGACTCTG 600 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGAGGCTAT CATCGAATTC ATCGAGAAGA ATCGTGGCAA GCCTGCTCAG TCAGACTCTG 544 CCAAAGTCGA TTCAGCAAAG GATGAACTTT AGAGGTTTGG TTCTCTTCCT TAAAGCATCA 660 |||||||||| |||||||||| |||||||||| |||| CCAAAGTCGA TTCAGCAAAG GATGAACTTT AGAG...... .......... .......... 578 ATTGTGATAT CTGCCATTAT TGGTTCTTTG TGCTACAGTA ATTGTAATTT ATATTGATCT 720 .......... .......... .......... .......... .......... .......... 578 CCTCTTATTC AGGACTCTAG GAACATTGTG TACTGGTGGA TTCAAGTTTT GTTGGAAGCA 780 |||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ..GACTCTAG GAACATTGTG TACTGGTGGA TTCAAGTTTT GTTGGAAGCA 626 TTGTGTTTCT GGTGAATTCG ACCTCCCACC GGACTACTGC TCTCTCCCAA CGCTTCCGTT 840 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGTGTTTCT GGTGAATTCG ACCTCCCACC GGACTACTGC TCTCTCCCAA CGCTTCCGTT 686 GTAGTTTTTG GAGCTTTTCA GCGCCAATAA AACGGTTGTA TGTATCCATT TTGTGTATCG 900 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTAGTTTTTG GAGCTTTTCA GCGCCAATAA AACGGTTGTA TGTATCCATT TTGTGTATCG 746 AATGTAGCTG GATTATGAGT TTATATTATA TCTATTGAGA AGTTCTCCAA 950 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATGTAGCTG GATTATGAGT TTATATTATA TCTATTGAGA AGTTCTCCAA 796 hqPGS_C06HBa0054K13.1-1+_SGN-E543832- (1 108,429 634,733 950) ******************************************************************************** EST sequence 34 -strand 602 n (File: SGN-E548944-) 1 TTAAGGTGGT TGTTAGGGAT ACCCTCCAGG ATATGGTTTA CAAATCGGGA AAAAAATGTG 61 CTGTTAGAGT TCTATGCCCC TTGGTGTGGC CACTGCAAGA GTCTGGCTCC AATTTTGGAT 121 GAAGTGGCTG TATCATTTGA AAGCGATCCT GATGTTCTCA TTGCAAAACT GGACGCAACC 181 GCAAATGATC TCCCGAAAGG TGACTTTGAT GTTCAGGGAT TCCCTACTAT GTACTTCAGA 241 TCCGCCTCTG GTAACTTGTC ACAGTACAAT GGTGAGAGAA CAAAAGAGGC TATCATCGAA 301 TTCATCGAGA AGAATCGTGG CAAGCCTGCT CAGTCAGACT CTGCCAAAGT CGATTCAGCA 361 AAGGATGAAC TTTAGAGGAC TCTAGGAACA TTGTGTACTG GTGGATTCAA GTTTTGTTGG 421 AAGCATTGTG TTTCTGGTGA ATTCGACCTC CCACCGGACT ACTGCTCTCT CCCAACGCTT 481 CCGTTGTAGT TTTTGGAGCT TTTCAGCGCC AATAAAACGG TTGTATGTAT CCATTTTGTG 541 TATCGAATGT AGCTGGATTA TGAGTTTATA TTATATCTAT TGAGAATCTC TCCTTAGGAA 601 AA Predicted gene structure (within gDNA segment 1 to 1701): Exon 1 1 108 ( 108 n); cDNA 64 171 ( 108 n); score: 0.991 Intron 1 109 428 ( 320 n); Pd: 1.000 (s: 1.00), Pa: 0.935 (s: 1.00) Exon 2 429 634 ( 206 n); cDNA 172 377 ( 206 n); score: 1.000 Intron 2 635 732 ( 98 n); Pd: 0.988 (s: 1.00), Pa: 0.846 (s: 1.00) Exon 3 733 948 ( 216 n); cDNA 378 593 ( 216 n); score: 0.991 MATCH C06HBa0054K13.1-1+ SGN-E548944- 0.994 530 0.880 C PGS_C06HBa0054K13.1-1+_SGN-E548944- (1 108,429 634,733 948) Alignment (genomic DNA sequence = upper lines): TTAGAGTTCT ATGCACCTTG GTGTGGCCAC TGCAAGAGTC TGGCTCCAAT TTTGGATGAA 60 |||||||||| |||| ||||| |||||||||| |||||||||| |||||||||| |||||||||| TTAGAGTTCT ATGCCCCTTG GTGTGGCCAC TGCAAGAGTC TGGCTCCAAT TTTGGATGAA 123 GTGGCTGTAT CATTTGAAAG CGATCCTGAT GTTCTCATTG CAAAACTGGT AAGAACTTTT 120 |||||||||| |||||||||| |||||||||| |||||||||| |||||||| GTGGCTGTAT CATTTGAAAG CGATCCTGAT GTTCTCATTG CAAAACTG.. .......... 171 TTCATAAACT AAACATGGAT ATTTGATGCA TGTATCTACT TCATCCTTTG TTACATTAAG 180 .......... .......... .......... .......... .......... .......... 171 TAACGGCATA ATAATCAAGA AAGAATGTGT AGAATTAGAA TCGGGTTTTT AGTATAAAAA 240 .......... .......... .......... .......... .......... .......... 171 TCAGAAAGAA CGGGGTGGAC ATTTTATCTT TGATGTTATG GATTTCGTTG TTAGAGAGAT 300 .......... .......... .......... .......... .......... .......... 171 TTTTAGTAGA AAACATCTGT AAAGTGTATC AAAAAAGAAG GTTTGTATGG CTTAAACACG 360 .......... .......... .......... .......... .......... .......... 171 ATTAGCAGTT GTAATGCACA GGACATGTAT TTGTTGTCAT TTCCTCTCAC CTGCTTCCTC 420 .......... .......... .......... .......... .......... .......... 171 ATTTACAGGA CGCAACCGCA AATGATCTCC CGAAAGGTGA CTTTGATGTT CAGGGATTCC 480 || |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ........GA CGCAACCGCA AATGATCTCC CGAAAGGTGA CTTTGATGTT CAGGGATTCC 223 CTACTATGTA CTTCAGATCC GCCTCTGGTA ACTTGTCACA GTACAATGGT GAGAGAACAA 540 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTACTATGTA CTTCAGATCC GCCTCTGGTA ACTTGTCACA GTACAATGGT GAGAGAACAA 283 AAGAGGCTAT CATCGAATTC ATCGAGAAGA ATCGTGGCAA GCCTGCTCAG TCAGACTCTG 600 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGAGGCTAT CATCGAATTC ATCGAGAAGA ATCGTGGCAA GCCTGCTCAG TCAGACTCTG 343 CCAAAGTCGA TTCAGCAAAG GATGAACTTT AGAGGTTTGG TTCTCTTCCT TAAAGCATCA 660 |||||||||| |||||||||| |||||||||| |||| CCAAAGTCGA TTCAGCAAAG GATGAACTTT AGAG...... .......... .......... 377 ATTGTGATAT CTGCCATTAT TGGTTCTTTG TGCTACAGTA ATTGTAATTT ATATTGATCT 720 .......... .......... .......... .......... .......... .......... 377 CCTCTTATTC AGGACTCTAG GAACATTGTG TACTGGTGGA TTCAAGTTTT GTTGGAAGCA 780 |||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ..GACTCTAG GAACATTGTG TACTGGTGGA TTCAAGTTTT GTTGGAAGCA 425 TTGTGTTTCT GGTGAATTCG ACCTCCCACC GGACTACTGC TCTCTCCCAA CGCTTCCGTT 840 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGTGTTTCT GGTGAATTCG ACCTCCCACC GGACTACTGC TCTCTCCCAA CGCTTCCGTT 485 GTAGTTTTTG GAGCTTTTCA GCGCCAATAA AACGGTTGTA TGTATCCATT TTGTGTATCG 900 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTAGTTTTTG GAGCTTTTCA GCGCCAATAA AACGGTTGTA TGTATCCATT TTGTGTATCG 545 AATGTAGCTG GATTATGAGT TTATATTATA TCTATTGAGA AGTTCTCC 948 |||||||||| |||||||||| |||||||||| |||||||||| | ||||| AATGTAGCTG GATTATGAGT TTATATTATA TCTATTGAGA ATCTCTCC 593 hqPGS_C06HBa0054K13.1-1+_SGN-E548944- (1 108,429 634,733 948) ******************************************************************************** EST sequence 9 +strand 715 n (File: SGN-E553391+) 1 CAAAAGTATA TTAAGGACCA TGTGGAACCT GATGCCATTG CTGCTTACTT GAAGGATTAC 61 AAGGAAGGAA AACTGAAGCC ACATGTGAAG TCAGAGCCCA TCCCTGAAGT CAATGACGAA 121 CCTGTTAAGG TGGTTGTTAG GGATACCCTC CAGGATATGG TTTACAAATC GGGAAAAAAT 181 GTGCTGTTAG AGTTCTATGC ACCTTGGTGT GGCCACTGCA AGAGTCTGGC TCCAATTTTG 241 GATGAAGTGG CTGTATCATT TGAAAGCGAT CCTGATGTTC TCATTGCAAA ACTGGACGCA 301 ACCGCAAATG ATCTCCCGAA AGGTGACTTT GATGTTCAGG GATTCCCTAC TATGTACTTC 361 AGATCCGCCT CTGGTAACTT GTCACAGTAC AATGGTGAGA GAACAAAAGA GGCTATCATC 421 GAATTCATCG AGAAGAATCG TGGCAAGCCT GCTCAGTCAG ACTCTGCCAA AGTCGATTCA 481 GCAAAGGATG AACTTTAGAG GACTCTAGGA ACATTGTGTA CTGGTGGATT CAAGTTTTGT 541 TGGAAGCATT GTGTTTCTGG TGAATTCGAC CTCCCACCGG ACTACTGCTC TCTCCCAACG 601 CTTCCGTTGT AGTTTTTGGA GCTTTTCAGC GCCAATAAAA CGGTTGTATG TATCCATTTT 661 GTGTATCGAA TGTAGCTGGA TTATGAGTTT ATATTATATC TATTGAGAAG TTCTC Predicted gene structure (within gDNA segment 1 to 1557): Exon 1 1 108 ( 108 n); cDNA 187 294 ( 108 n); score: 1.000 Intron 1 109 428 ( 320 n); Pd: 1.000 (s: 1.00), Pa: 0.935 (s: 1.00) Exon 2 429 634 ( 206 n); cDNA 295 500 ( 206 n); score: 1.000 Intron 2 635 732 ( 98 n); Pd: 0.988 (s: 1.00), Pa: 0.846 (s: 1.00) Exon 3 733 947 ( 215 n); cDNA 501 715 ( 215 n); score: 1.000 MATCH C06HBa0054K13.1-1+ SGN-E553391+ 1.000 529 0.740 C PGS_C06HBa0054K13.1-1+_SGN-E553391+ (1 108,429 634,733 947) Alignment (genomic DNA sequence = upper lines): TTAGAGTTCT ATGCACCTTG GTGTGGCCAC TGCAAGAGTC TGGCTCCAAT TTTGGATGAA 60 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTAGAGTTCT ATGCACCTTG GTGTGGCCAC TGCAAGAGTC TGGCTCCAAT TTTGGATGAA 246 GTGGCTGTAT CATTTGAAAG CGATCCTGAT GTTCTCATTG CAAAACTGGT AAGAACTTTT 120 |||||||||| |||||||||| |||||||||| |||||||||| |||||||| GTGGCTGTAT CATTTGAAAG CGATCCTGAT GTTCTCATTG CAAAACTG.. .......... 294 TTCATAAACT AAACATGGAT ATTTGATGCA TGTATCTACT TCATCCTTTG TTACATTAAG 180 .......... .......... .......... .......... .......... .......... 294 TAACGGCATA ATAATCAAGA AAGAATGTGT AGAATTAGAA TCGGGTTTTT AGTATAAAAA 240 .......... .......... .......... .......... .......... .......... 294 TCAGAAAGAA CGGGGTGGAC ATTTTATCTT TGATGTTATG GATTTCGTTG TTAGAGAGAT 300 .......... .......... .......... .......... .......... .......... 294 TTTTAGTAGA AAACATCTGT AAAGTGTATC AAAAAAGAAG GTTTGTATGG CTTAAACACG 360 .......... .......... .......... .......... .......... .......... 294 ATTAGCAGTT GTAATGCACA GGACATGTAT TTGTTGTCAT TTCCTCTCAC CTGCTTCCTC 420 .......... .......... .......... .......... .......... .......... 294 ATTTACAGGA CGCAACCGCA AATGATCTCC CGAAAGGTGA CTTTGATGTT CAGGGATTCC 480 || |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ........GA CGCAACCGCA AATGATCTCC CGAAAGGTGA CTTTGATGTT CAGGGATTCC 346 CTACTATGTA CTTCAGATCC GCCTCTGGTA ACTTGTCACA GTACAATGGT GAGAGAACAA 540 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTACTATGTA CTTCAGATCC GCCTCTGGTA ACTTGTCACA GTACAATGGT GAGAGAACAA 406 AAGAGGCTAT CATCGAATTC ATCGAGAAGA ATCGTGGCAA GCCTGCTCAG TCAGACTCTG 600 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGAGGCTAT CATCGAATTC ATCGAGAAGA ATCGTGGCAA GCCTGCTCAG TCAGACTCTG 466 CCAAAGTCGA TTCAGCAAAG GATGAACTTT AGAGGTTTGG TTCTCTTCCT TAAAGCATCA 660 |||||||||| |||||||||| |||||||||| |||| CCAAAGTCGA TTCAGCAAAG GATGAACTTT AGAG...... .......... .......... 500 ATTGTGATAT CTGCCATTAT TGGTTCTTTG TGCTACAGTA ATTGTAATTT ATATTGATCT 720 .......... .......... .......... .......... .......... .......... 500 CCTCTTATTC AGGACTCTAG GAACATTGTG TACTGGTGGA TTCAAGTTTT GTTGGAAGCA 780 |||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ..GACTCTAG GAACATTGTG TACTGGTGGA TTCAAGTTTT GTTGGAAGCA 548 TTGTGTTTCT GGTGAATTCG ACCTCCCACC GGACTACTGC TCTCTCCCAA CGCTTCCGTT 840 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGTGTTTCT GGTGAATTCG ACCTCCCACC GGACTACTGC TCTCTCCCAA CGCTTCCGTT 608 GTAGTTTTTG GAGCTTTTCA GCGCCAATAA AACGGTTGTA TGTATCCATT TTGTGTATCG 900 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTAGTTTTTG GAGCTTTTCA GCGCCAATAA AACGGTTGTA TGTATCCATT TTGTGTATCG 668 AATGTAGCTG GATTATGAGT TTATATTATA TCTATTGAGA AGTTCTC 947 |||||||||| |||||||||| |||||||||| |||||||||| ||||||| AATGTAGCTG GATTATGAGT TTATATTATA TCTATTGAGA AGTTCTC 715 hqPGS_C06HBa0054K13.1-1+_SGN-E553391+ (1 108,429 634,733 947) ******************************************************************************** EST sequence 13 +strand 713 n (File: SGN-E556457+) 1 AAAGTATATT AAGGACCATG TGGAACCTGA TGCCATTGCT GCTTACTTGA AGGATTACAA 61 GGAAGGAAAA CTGAAGCCAC ATGTGAAGTC AGAGCCCATC CCTGAAGTCA ATGACGAACC 121 TGTTAAGGTG GTTGTTAGGG ATACCCTCCA GGATATGGTT TACAAATCGG GAAAAAATGT 181 GCTGTTAGAG TTCTATGCAC CTTGGTGTGG CCACTGCAAG AGTCTGGCTC CAATTTTGGA 241 TGAAGTGGCT GTATCATTTG AAAGCGATCC TGATGTTCTC ATTGCAAAAC TGGACGCAAC 301 CGCAAATGAT CTCCCGAAAG GTGACTTTGA TGTTCAGGGA TTCCCTACTA TGTACTTCAG 361 ATCCGCCTCT GGTAACTTGT CACAGTACAA TGGTGAGAGA ACAAAAGAGG CTATCATCGA 421 ATTCATCGAG AAGAATCGTG GCAAGCCTGC TCAGTCAGAC TCTGCCAAAG TCGATTCAGC 481 AAAGGATGAA CTTTAGAGGA CTCTAGGAAC ATTGTGTACT GGTGGATTCA AGTTTTGTTG 541 GAAGCATTGT GTTTCTGGTG AATTCGACCT CCCACCGGAC TACTGCTCTC TCCCAACGCT 601 TCCGTTGTAG TTTTTGGAGC TTTTCAGCGC CAATAAAACG GTTGTATGTA TCCATTTTGT 661 GTATCGAATG TAGCTGGATT ATGAGTTTAT ATTGTATCTA TTGAGAAGTT CTC Predicted gene structure (within gDNA segment 1 to 1557): Exon 1 1 108 ( 108 n); cDNA 185 292 ( 108 n); score: 1.000 Intron 1 109 428 ( 320 n); Pd: 1.000 (s: 1.00), Pa: 0.935 (s: 1.00) Exon 2 429 634 ( 206 n); cDNA 293 498 ( 206 n); score: 1.000 Intron 2 635 732 ( 98 n); Pd: 0.988 (s: 1.00), Pa: 0.846 (s: 1.00) Exon 3 733 947 ( 215 n); cDNA 499 713 ( 215 n); score: 0.995 MATCH C06HBa0054K13.1-1+ SGN-E556457+ 0.998 529 0.742 C PGS_C06HBa0054K13.1-1+_SGN-E556457+ (1 108,429 634,733 947) Alignment (genomic DNA sequence = upper lines): TTAGAGTTCT ATGCACCTTG GTGTGGCCAC TGCAAGAGTC TGGCTCCAAT TTTGGATGAA 60 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTAGAGTTCT ATGCACCTTG GTGTGGCCAC TGCAAGAGTC TGGCTCCAAT TTTGGATGAA 244 GTGGCTGTAT CATTTGAAAG CGATCCTGAT GTTCTCATTG CAAAACTGGT AAGAACTTTT 120 |||||||||| |||||||||| |||||||||| |||||||||| |||||||| GTGGCTGTAT CATTTGAAAG CGATCCTGAT GTTCTCATTG CAAAACTG.. .......... 292 TTCATAAACT AAACATGGAT ATTTGATGCA TGTATCTACT TCATCCTTTG TTACATTAAG 180 .......... .......... .......... .......... .......... .......... 292 TAACGGCATA ATAATCAAGA AAGAATGTGT AGAATTAGAA TCGGGTTTTT AGTATAAAAA 240 .......... .......... .......... .......... .......... .......... 292 TCAGAAAGAA CGGGGTGGAC ATTTTATCTT TGATGTTATG GATTTCGTTG TTAGAGAGAT 300 .......... .......... .......... .......... .......... .......... 292 TTTTAGTAGA AAACATCTGT AAAGTGTATC AAAAAAGAAG GTTTGTATGG CTTAAACACG 360 .......... .......... .......... .......... .......... .......... 292 ATTAGCAGTT GTAATGCACA GGACATGTAT TTGTTGTCAT TTCCTCTCAC CTGCTTCCTC 420 .......... .......... .......... .......... .......... .......... 292 ATTTACAGGA CGCAACCGCA AATGATCTCC CGAAAGGTGA CTTTGATGTT CAGGGATTCC 480 || |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ........GA CGCAACCGCA AATGATCTCC CGAAAGGTGA CTTTGATGTT CAGGGATTCC 344 CTACTATGTA CTTCAGATCC GCCTCTGGTA ACTTGTCACA GTACAATGGT GAGAGAACAA 540 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTACTATGTA CTTCAGATCC GCCTCTGGTA ACTTGTCACA GTACAATGGT GAGAGAACAA 404 AAGAGGCTAT CATCGAATTC ATCGAGAAGA ATCGTGGCAA GCCTGCTCAG TCAGACTCTG 600 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGAGGCTAT CATCGAATTC ATCGAGAAGA ATCGTGGCAA GCCTGCTCAG TCAGACTCTG 464 CCAAAGTCGA TTCAGCAAAG GATGAACTTT AGAGGTTTGG TTCTCTTCCT TAAAGCATCA 660 |||||||||| |||||||||| |||||||||| |||| CCAAAGTCGA TTCAGCAAAG GATGAACTTT AGAG...... .......... .......... 498 ATTGTGATAT CTGCCATTAT TGGTTCTTTG TGCTACAGTA ATTGTAATTT ATATTGATCT 720 .......... .......... .......... .......... .......... .......... 498 CCTCTTATTC AGGACTCTAG GAACATTGTG TACTGGTGGA TTCAAGTTTT GTTGGAAGCA 780 |||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ..GACTCTAG GAACATTGTG TACTGGTGGA TTCAAGTTTT GTTGGAAGCA 546 TTGTGTTTCT GGTGAATTCG ACCTCCCACC GGACTACTGC TCTCTCCCAA CGCTTCCGTT 840 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGTGTTTCT GGTGAATTCG ACCTCCCACC GGACTACTGC TCTCTCCCAA CGCTTCCGTT 606 GTAGTTTTTG GAGCTTTTCA GCGCCAATAA AACGGTTGTA TGTATCCATT TTGTGTATCG 900 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTAGTTTTTG GAGCTTTTCA GCGCCAATAA AACGGTTGTA TGTATCCATT TTGTGTATCG 666 AATGTAGCTG GATTATGAGT TTATATTATA TCTATTGAGA AGTTCTC 947 |||||||||| |||||||||| ||||||| || |||||||||| ||||||| AATGTAGCTG GATTATGAGT TTATATTGTA TCTATTGAGA AGTTCTC 713 hqPGS_C06HBa0054K13.1-1+_SGN-E556457+ (1 108,429 634,733 947) ******************************************************************************** EST sequence 7 +strand 734 n (File: SGN-E552339+) 1 GGATCCCCCG GGCTGCAGGA CAAAAGTATA TTAAGGACCA TGTGGAACCT GATGCCATTG 61 CTGCTTACTT GAAGGATTAC AAGGAAGGAA AACTGAAGCC ACATGTGAAG TCAGAGCCCA 121 TCCCTGAAGT CAATGACGAA CCTGTTAAGG TGGTTGTTAG GGATACCCTC CAGGATATGG 181 TTTACAAATC GGGAAAAAAT GTGCTGTTAG AGTTCTATGC ACCTTGGTGT GGCCACTGCA 241 AGAGTCTGGC TCCAATTTTG GATGAAGTGG CTGTATCATT TGAAAGCGAT CCTGATGTTC 301 TCATTGCAAA ACTGGACGCA ACCGCAAATG ATCTCCCGAA AGGTGACTTT GATGTTCAGG 361 GATTCCCTAC TATGTACTTC AGATCCGCCT CTGGTAACTT GTCACAGTAC AATGGTGAGA 421 GAACAAAAGA GGCTATCATC GAATTCATCG AGAAGAATCG TGGCAAGCCT GCTCAGTCAG 481 ACTCTGCCAA AGTCGATTCA GCAAAGGATG AACTTTAGAG GACTCTAGGA ACATTGTGTA 541 CTGGTGGATT CAAGTTTTGT TGGAAGCATT GTGTTTCTGG TGAATTCGAC CTCCCACCGG 601 ACTACTGCTC TCTCCCAACG CTTCCGTTGT AGTTTTTGGA GCTTTTCAGC GCCAATAAAA 661 CGGTTGTATG TATCCATTTT GTGTATCGAA TGTAGCTGGA TTATGAGTTT ATATTATATC 721 TATTGAGAAG TTCT Predicted gene structure (within gDNA segment 1 to 1556): Exon 1 1 108 ( 108 n); cDNA 207 314 ( 108 n); score: 1.000 Intron 1 109 428 ( 320 n); Pd: 1.000 (s: 1.00), Pa: 0.935 (s: 1.00) Exon 2 429 634 ( 206 n); cDNA 315 520 ( 206 n); score: 1.000 Intron 2 635 732 ( 98 n); Pd: 0.988 (s: 1.00), Pa: 0.846 (s: 1.00) Exon 3 733 946 ( 214 n); cDNA 521 734 ( 214 n); score: 1.000 MATCH C06HBa0054K13.1-1+ SGN-E552339+ 1.000 528 0.719 C PGS_C06HBa0054K13.1-1+_SGN-E552339+ (1 108,429 634,733 946) Alignment (genomic DNA sequence = upper lines): TTAGAGTTCT ATGCACCTTG GTGTGGCCAC TGCAAGAGTC TGGCTCCAAT TTTGGATGAA 60 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTAGAGTTCT ATGCACCTTG GTGTGGCCAC TGCAAGAGTC TGGCTCCAAT TTTGGATGAA 266 GTGGCTGTAT CATTTGAAAG CGATCCTGAT GTTCTCATTG CAAAACTGGT AAGAACTTTT 120 |||||||||| |||||||||| |||||||||| |||||||||| |||||||| GTGGCTGTAT CATTTGAAAG CGATCCTGAT GTTCTCATTG CAAAACTG.. .......... 314 TTCATAAACT AAACATGGAT ATTTGATGCA TGTATCTACT TCATCCTTTG TTACATTAAG 180 .......... .......... .......... .......... .......... .......... 314 TAACGGCATA ATAATCAAGA AAGAATGTGT AGAATTAGAA TCGGGTTTTT AGTATAAAAA 240 .......... .......... .......... .......... .......... .......... 314 TCAGAAAGAA CGGGGTGGAC ATTTTATCTT TGATGTTATG GATTTCGTTG TTAGAGAGAT 300 .......... .......... .......... .......... .......... .......... 314 TTTTAGTAGA AAACATCTGT AAAGTGTATC AAAAAAGAAG GTTTGTATGG CTTAAACACG 360 .......... .......... .......... .......... .......... .......... 314 ATTAGCAGTT GTAATGCACA GGACATGTAT TTGTTGTCAT TTCCTCTCAC CTGCTTCCTC 420 .......... .......... .......... .......... .......... .......... 314 ATTTACAGGA CGCAACCGCA AATGATCTCC CGAAAGGTGA CTTTGATGTT CAGGGATTCC 480 || |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ........GA CGCAACCGCA AATGATCTCC CGAAAGGTGA CTTTGATGTT CAGGGATTCC 366 CTACTATGTA CTTCAGATCC GCCTCTGGTA ACTTGTCACA GTACAATGGT GAGAGAACAA 540 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTACTATGTA CTTCAGATCC GCCTCTGGTA ACTTGTCACA GTACAATGGT GAGAGAACAA 426 AAGAGGCTAT CATCGAATTC ATCGAGAAGA ATCGTGGCAA GCCTGCTCAG TCAGACTCTG 600 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGAGGCTAT CATCGAATTC ATCGAGAAGA ATCGTGGCAA GCCTGCTCAG TCAGACTCTG 486 CCAAAGTCGA TTCAGCAAAG GATGAACTTT AGAGGTTTGG TTCTCTTCCT TAAAGCATCA 660 |||||||||| |||||||||| |||||||||| |||| CCAAAGTCGA TTCAGCAAAG GATGAACTTT AGAG...... .......... .......... 520 ATTGTGATAT CTGCCATTAT TGGTTCTTTG TGCTACAGTA ATTGTAATTT ATATTGATCT 720 .......... .......... .......... .......... .......... .......... 520 CCTCTTATTC AGGACTCTAG GAACATTGTG TACTGGTGGA TTCAAGTTTT GTTGGAAGCA 780 |||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ..GACTCTAG GAACATTGTG TACTGGTGGA TTCAAGTTTT GTTGGAAGCA 568 TTGTGTTTCT GGTGAATTCG ACCTCCCACC GGACTACTGC TCTCTCCCAA CGCTTCCGTT 840 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGTGTTTCT GGTGAATTCG ACCTCCCACC GGACTACTGC TCTCTCCCAA CGCTTCCGTT 628 GTAGTTTTTG GAGCTTTTCA GCGCCAATAA AACGGTTGTA TGTATCCATT TTGTGTATCG 900 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTAGTTTTTG GAGCTTTTCA GCGCCAATAA AACGGTTGTA TGTATCCATT TTGTGTATCG 688 AATGTAGCTG GATTATGAGT TTATATTATA TCTATTGAGA AGTTCT 946 |||||||||| |||||||||| |||||||||| |||||||||| |||||| AATGTAGCTG GATTATGAGT TTATATTATA TCTATTGAGA AGTTCT 734 hqPGS_C06HBa0054K13.1-1+_SGN-E552339+ (1 108,429 634,733 946) ******************************************************************************** EST sequence 21 +strand 578 n (File: SGN-E356569+) 1 TTAGGGATAC CCTCCAGGAT ATGGTTTACA AATCGGGAAA AAATGTGCTG TTAGAGTTCT 61 ATGCACCTTG GTGTGGCCAC TGCAAGAGTC TGGCTCCAAT TTTGGATGAA GTGGCTGTAT 121 CATTTGAAAG CGATCCTGAT GTTCTCATTG CAAAACTGGA CGCAACCGCA AATGATCTCC 181 CGAAAGGTGA CTTTGATGTT CAGGGATTCC CTACTATGTA CTTCAGATCC GCCTCTGGTA 241 ACTTGTCACA GTACAATGGT GAGAGAACAA AAGAGGCTAT CATCGAATTC ATCGAGAAGA 301 ATCGTGGCAA GCCTGCTCAG TCAGACTCTG CCAAAGTCGA TTCAGCAAAG GATGAACTTT 361 AGAGGACTCT AGGAACATTG TGTACTGGTG GATTCAAGTT TTGTTGGAAG CATTGTGTTT 421 CTGGTGAATT CGACCTCCCA CCGGACTACT GCTCTCTCCC AACGCTTCCG TTGTAGTTTT 481 TGGAGCTTTT CAGCGCCAAT AAAACGGTTG TATGTATCCA TTTTGTGTAT CGAATGTAGC 541 TGGATTATGA GTTTATATTA TATCTATTGA GAAGTTCT Predicted gene structure (within gDNA segment 1 to 1556): Exon 1 1 108 ( 108 n); cDNA 51 158 ( 108 n); score: 1.000 Intron 1 109 428 ( 320 n); Pd: 1.000 (s: 1.00), Pa: 0.935 (s: 1.00) Exon 2 429 634 ( 206 n); cDNA 159 364 ( 206 n); score: 1.000 Intron 2 635 732 ( 98 n); Pd: 0.988 (s: 1.00), Pa: 0.846 (s: 1.00) Exon 3 733 946 ( 214 n); cDNA 365 578 ( 214 n); score: 1.000 MATCH C06HBa0054K13.1-1+ SGN-E356569+ 1.000 528 0.913 C PGS_C06HBa0054K13.1-1+_SGN-E356569+ (1 108,429 634,733 946) Alignment (genomic DNA sequence = upper lines): TTAGAGTTCT ATGCACCTTG GTGTGGCCAC TGCAAGAGTC TGGCTCCAAT TTTGGATGAA 60 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTAGAGTTCT ATGCACCTTG GTGTGGCCAC TGCAAGAGTC TGGCTCCAAT TTTGGATGAA 110 GTGGCTGTAT CATTTGAAAG CGATCCTGAT GTTCTCATTG CAAAACTGGT AAGAACTTTT 120 |||||||||| |||||||||| |||||||||| |||||||||| |||||||| GTGGCTGTAT CATTTGAAAG CGATCCTGAT GTTCTCATTG CAAAACTG.. .......... 158 TTCATAAACT AAACATGGAT ATTTGATGCA TGTATCTACT TCATCCTTTG TTACATTAAG 180 .......... .......... .......... .......... .......... .......... 158 TAACGGCATA ATAATCAAGA AAGAATGTGT AGAATTAGAA TCGGGTTTTT AGTATAAAAA 240 .......... .......... .......... .......... .......... .......... 158 TCAGAAAGAA CGGGGTGGAC ATTTTATCTT TGATGTTATG GATTTCGTTG TTAGAGAGAT 300 .......... .......... .......... .......... .......... .......... 158 TTTTAGTAGA AAACATCTGT AAAGTGTATC AAAAAAGAAG GTTTGTATGG CTTAAACACG 360 .......... .......... .......... .......... .......... .......... 158 ATTAGCAGTT GTAATGCACA GGACATGTAT TTGTTGTCAT TTCCTCTCAC CTGCTTCCTC 420 .......... .......... .......... .......... .......... .......... 158 ATTTACAGGA CGCAACCGCA AATGATCTCC CGAAAGGTGA CTTTGATGTT CAGGGATTCC 480 || |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ........GA CGCAACCGCA AATGATCTCC CGAAAGGTGA CTTTGATGTT CAGGGATTCC 210 CTACTATGTA CTTCAGATCC GCCTCTGGTA ACTTGTCACA GTACAATGGT GAGAGAACAA 540 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTACTATGTA CTTCAGATCC GCCTCTGGTA ACTTGTCACA GTACAATGGT GAGAGAACAA 270 AAGAGGCTAT CATCGAATTC ATCGAGAAGA ATCGTGGCAA GCCTGCTCAG TCAGACTCTG 600 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGAGGCTAT CATCGAATTC ATCGAGAAGA ATCGTGGCAA GCCTGCTCAG TCAGACTCTG 330 CCAAAGTCGA TTCAGCAAAG GATGAACTTT AGAGGTTTGG TTCTCTTCCT TAAAGCATCA 660 |||||||||| |||||||||| |||||||||| |||| CCAAAGTCGA TTCAGCAAAG GATGAACTTT AGAG...... .......... .......... 364 ATTGTGATAT CTGCCATTAT TGGTTCTTTG TGCTACAGTA ATTGTAATTT ATATTGATCT 720 .......... .......... .......... .......... .......... .......... 364 CCTCTTATTC AGGACTCTAG GAACATTGTG TACTGGTGGA TTCAAGTTTT GTTGGAAGCA 780 |||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ..GACTCTAG GAACATTGTG TACTGGTGGA TTCAAGTTTT GTTGGAAGCA 412 TTGTGTTTCT GGTGAATTCG ACCTCCCACC GGACTACTGC TCTCTCCCAA CGCTTCCGTT 840 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGTGTTTCT GGTGAATTCG ACCTCCCACC GGACTACTGC TCTCTCCCAA CGCTTCCGTT 472 GTAGTTTTTG GAGCTTTTCA GCGCCAATAA AACGGTTGTA TGTATCCATT TTGTGTATCG 900 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTAGTTTTTG GAGCTTTTCA GCGCCAATAA AACGGTTGTA TGTATCCATT TTGTGTATCG 532 AATGTAGCTG GATTATGAGT TTATATTATA TCTATTGAGA AGTTCT 946 |||||||||| |||||||||| |||||||||| |||||||||| |||||| AATGTAGCTG GATTATGAGT TTATATTATA TCTATTGAGA AGTTCT 578 hqPGS_C06HBa0054K13.1-1+_SGN-E356569+ (1 108,429 634,733 946) ******************************************************************************** EST sequence 19 +strand 704 n (File: SGN-E344174+) 1 AAAAGTATAT TAAGGACCAT GTGGAACCTG ATGCCATTGC TGCTTACTTG AAGGATTACA 61 AGGAAGGAAA ACTGAAGCCA CATGTGAAGT CAGAGCCCAT CCCTGAAGTC AATGACGAAC 121 CTGTTAAGGT GGTTGTTAGG GATACCCTCC AGGATATGGT TTACAAATCG GGAAAAAATG 181 TGCTGTTAGA GTTCTATGCA CCTTGGTGTG GCCACTGCAA GAGTCTGGCT CCAATTTTGG 241 ATGAAGTGGC TGTATCATTT GAAAGCGATC CTGATGTTCT CATTGCAAAA CTGGACGCAA 301 CCGCAAATGA TCTCCCGAAA GGTGACTTTG ATGTTCAGGG ATTCCCTACT ATGTACTTCA 361 GATCCGCCTC TGGTAACTTG TCACAGTACA ATGGTGAGAG AACAAAAGAG GCTATCATCG 421 AATTCATCGA GAAGAATCGT GGCAAGCCTG CTCAGTCAGA CTCTGCCAAA GTCGATTCAG 481 CAAAGGATGA ACTTTAGAGG ACTCTAGGAA CATTGTGTAC TGGTGGATTC AAGTTTTGTT 541 GGAAGCATTG TGTTTCTGGT GAATTCGACC TCCCACCGGA CTACTGCTCT CTCCCAACGC 601 TTCCGTTGTA GTTTTTGGAG CTTTTCAGCG CCAATAAAAC GGTTGTATGT ATCCATTTTG 661 TGTATCGAAT GTAGCTGGAT TATGAGTTTA TATTATATCT ATTG Predicted gene structure (within gDNA segment 1 to 1547): Exon 1 1 108 ( 108 n); cDNA 186 293 ( 108 n); score: 1.000 Intron 1 109 428 ( 320 n); Pd: 1.000 (s: 1.00), Pa: 0.935 (s: 1.00) Exon 2 429 634 ( 206 n); cDNA 294 499 ( 206 n); score: 1.000 Intron 2 635 732 ( 98 n); Pd: 0.988 (s: 1.00), Pa: 0.846 (s: 1.00) Exon 3 733 937 ( 205 n); cDNA 500 704 ( 205 n); score: 1.000 MATCH C06HBa0054K13.1-1+ SGN-E344174+ 1.000 519 0.737 C PGS_C06HBa0054K13.1-1+_SGN-E344174+ (1 108,429 634,733 937) Alignment (genomic DNA sequence = upper lines): TTAGAGTTCT ATGCACCTTG GTGTGGCCAC TGCAAGAGTC TGGCTCCAAT TTTGGATGAA 60 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTAGAGTTCT ATGCACCTTG GTGTGGCCAC TGCAAGAGTC TGGCTCCAAT TTTGGATGAA 245 GTGGCTGTAT CATTTGAAAG CGATCCTGAT GTTCTCATTG CAAAACTGGT AAGAACTTTT 120 |||||||||| |||||||||| |||||||||| |||||||||| |||||||| GTGGCTGTAT CATTTGAAAG CGATCCTGAT GTTCTCATTG CAAAACTG.. .......... 293 TTCATAAACT AAACATGGAT ATTTGATGCA TGTATCTACT TCATCCTTTG TTACATTAAG 180 .......... .......... .......... .......... .......... .......... 293 TAACGGCATA ATAATCAAGA AAGAATGTGT AGAATTAGAA TCGGGTTTTT AGTATAAAAA 240 .......... .......... .......... .......... .......... .......... 293 TCAGAAAGAA CGGGGTGGAC ATTTTATCTT TGATGTTATG GATTTCGTTG TTAGAGAGAT 300 .......... .......... .......... .......... .......... .......... 293 TTTTAGTAGA AAACATCTGT AAAGTGTATC AAAAAAGAAG GTTTGTATGG CTTAAACACG 360 .......... .......... .......... .......... .......... .......... 293 ATTAGCAGTT GTAATGCACA GGACATGTAT TTGTTGTCAT TTCCTCTCAC CTGCTTCCTC 420 .......... .......... .......... .......... .......... .......... 293 ATTTACAGGA CGCAACCGCA AATGATCTCC CGAAAGGTGA CTTTGATGTT CAGGGATTCC 480 || |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ........GA CGCAACCGCA AATGATCTCC CGAAAGGTGA CTTTGATGTT CAGGGATTCC 345 CTACTATGTA CTTCAGATCC GCCTCTGGTA ACTTGTCACA GTACAATGGT GAGAGAACAA 540 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTACTATGTA CTTCAGATCC GCCTCTGGTA ACTTGTCACA GTACAATGGT GAGAGAACAA 405 AAGAGGCTAT CATCGAATTC ATCGAGAAGA ATCGTGGCAA GCCTGCTCAG TCAGACTCTG 600 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGAGGCTAT CATCGAATTC ATCGAGAAGA ATCGTGGCAA GCCTGCTCAG TCAGACTCTG 465 CCAAAGTCGA TTCAGCAAAG GATGAACTTT AGAGGTTTGG TTCTCTTCCT TAAAGCATCA 660 |||||||||| |||||||||| |||||||||| |||| CCAAAGTCGA TTCAGCAAAG GATGAACTTT AGAG...... .......... .......... 499 ATTGTGATAT CTGCCATTAT TGGTTCTTTG TGCTACAGTA ATTGTAATTT ATATTGATCT 720 .......... .......... .......... .......... .......... .......... 499 CCTCTTATTC AGGACTCTAG GAACATTGTG TACTGGTGGA TTCAAGTTTT GTTGGAAGCA 780 |||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ..GACTCTAG GAACATTGTG TACTGGTGGA TTCAAGTTTT GTTGGAAGCA 547 TTGTGTTTCT GGTGAATTCG ACCTCCCACC GGACTACTGC TCTCTCCCAA CGCTTCCGTT 840 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGTGTTTCT GGTGAATTCG ACCTCCCACC GGACTACTGC TCTCTCCCAA CGCTTCCGTT 607 GTAGTTTTTG GAGCTTTTCA GCGCCAATAA AACGGTTGTA TGTATCCATT TTGTGTATCG 900 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTAGTTTTTG GAGCTTTTCA GCGCCAATAA AACGGTTGTA TGTATCCATT TTGTGTATCG 667 AATGTAGCTG GATTATGAGT TTATATTATA TCTATTG 937 |||||||||| |||||||||| |||||||||| ||||||| AATGTAGCTG GATTATGAGT TTATATTATA TCTATTG 704 hqPGS_C06HBa0054K13.1-1+_SGN-E344174+ (1 108,429 634,733 937) ******************************************************************************** EST sequence 25 +strand 612 n (File: SGN-E279446+) 1 CATGTGGAAC CTGATGCCAT TGCTGCTTAC TTGAAGGATT ACAAGGAAGG AAAACTGAAG 61 CCACATGTGA AGTCAGAGCC CATCCCTGAA GTCAATGACG AACCTGTTAA GGTGGTTGTT 121 AGGGATACCC TCCAGGATAT GGTTTACAAA TCGGGAAAAA ATGTGCTGTT AGAGTTCTAT 181 GCACCTTGGT GTGGCCACTG CAAGAGTCTG GCTCCAATTT TGGATGAAGT GGCTGTATCA 241 TTTGAAAGCG ATCCTGATGT TCTCATTGCA AAACTGGACG CAACCGCAAA TGATCTCCCG 301 AAAGGTGACT TTGATGTTCA GGGATTCCCT ACTATGTACT TCAGATCCGC CTCTGGTAAC 361 TTGTCACAGT ACAATGGTGA GAGAACAAAA GAGGCTATCA TCGAATTCAT CGAGAAGAAT 421 CGTGGCAAGC CTGCTCAGTC AGACTCTGCC AAAGTCGATT CAGCAAAGGA TGAACTTTAG 481 AGGACTCTAG GAACATTGTG TACTGGTGGA TTCAAGTTTT GTTGGAAGCA TTGTGTTTCT 541 GGTGAATTCG ACCTCCCACC GGACTACTGC TCTCTCCCAA CGCTTNCGTT GTAGTTTTTG 601 GAGCTTTTCA GC Predicted gene structure (within gDNA segment 1 to 1472): Exon 1 1 108 ( 108 n); cDNA 169 276 ( 108 n); score: 1.000 Intron 1 109 428 ( 320 n); Pd: 1.000 (s: 1.00), Pa: 0.935 (s: 1.00) Exon 2 429 634 ( 206 n); cDNA 277 482 ( 206 n); score: 1.000 Intron 2 635 732 ( 98 n); Pd: 0.988 (s: 1.00), Pa: 0.846 (s: 1.00) Exon 3 733 862 ( 130 n); cDNA 483 612 ( 130 n); score: 0.992 MATCH C06HBa0054K13.1-1+ SGN-E279446+ 0.998 444 0.725 C PGS_C06HBa0054K13.1-1+_SGN-E279446+ (1 108,429 634,733 862) Alignment (genomic DNA sequence = upper lines): TTAGAGTTCT ATGCACCTTG GTGTGGCCAC TGCAAGAGTC TGGCTCCAAT TTTGGATGAA 60 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTAGAGTTCT ATGCACCTTG GTGTGGCCAC TGCAAGAGTC TGGCTCCAAT TTTGGATGAA 228 GTGGCTGTAT CATTTGAAAG CGATCCTGAT GTTCTCATTG CAAAACTGGT AAGAACTTTT 120 |||||||||| |||||||||| |||||||||| |||||||||| |||||||| GTGGCTGTAT CATTTGAAAG CGATCCTGAT GTTCTCATTG CAAAACTG.. .......... 276 TTCATAAACT AAACATGGAT ATTTGATGCA TGTATCTACT TCATCCTTTG TTACATTAAG 180 .......... .......... .......... .......... .......... .......... 276 TAACGGCATA ATAATCAAGA AAGAATGTGT AGAATTAGAA TCGGGTTTTT AGTATAAAAA 240 .......... .......... .......... .......... .......... .......... 276 TCAGAAAGAA CGGGGTGGAC ATTTTATCTT TGATGTTATG GATTTCGTTG TTAGAGAGAT 300 .......... .......... .......... .......... .......... .......... 276 TTTTAGTAGA AAACATCTGT AAAGTGTATC AAAAAAGAAG GTTTGTATGG CTTAAACACG 360 .......... .......... .......... .......... .......... .......... 276 ATTAGCAGTT GTAATGCACA GGACATGTAT TTGTTGTCAT TTCCTCTCAC CTGCTTCCTC 420 .......... .......... .......... .......... .......... .......... 276 ATTTACAGGA CGCAACCGCA AATGATCTCC CGAAAGGTGA CTTTGATGTT CAGGGATTCC 480 || |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ........GA CGCAACCGCA AATGATCTCC CGAAAGGTGA CTTTGATGTT CAGGGATTCC 328 CTACTATGTA CTTCAGATCC GCCTCTGGTA ACTTGTCACA GTACAATGGT GAGAGAACAA 540 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTACTATGTA CTTCAGATCC GCCTCTGGTA ACTTGTCACA GTACAATGGT GAGAGAACAA 388 AAGAGGCTAT CATCGAATTC ATCGAGAAGA ATCGTGGCAA GCCTGCTCAG TCAGACTCTG 600 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGAGGCTAT CATCGAATTC ATCGAGAAGA ATCGTGGCAA GCCTGCTCAG TCAGACTCTG 448 CCAAAGTCGA TTCAGCAAAG GATGAACTTT AGAGGTTTGG TTCTCTTCCT TAAAGCATCA 660 |||||||||| |||||||||| |||||||||| |||| CCAAAGTCGA TTCAGCAAAG GATGAACTTT AGAG...... .......... .......... 482 ATTGTGATAT CTGCCATTAT TGGTTCTTTG TGCTACAGTA ATTGTAATTT ATATTGATCT 720 .......... .......... .......... .......... .......... .......... 482 CCTCTTATTC AGGACTCTAG GAACATTGTG TACTGGTGGA TTCAAGTTTT GTTGGAAGCA 780 |||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ..GACTCTAG GAACATTGTG TACTGGTGGA TTCAAGTTTT GTTGGAAGCA 530 TTGTGTTTCT GGTGAATTCG ACCTCCCACC GGACTACTGC TCTCTCCCAA CGCTTCCGTT 840 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||| |||| TTGTGTTTCT GGTGAATTCG ACCTCCCACC GGACTACTGC TCTCTCCCAA CGCTTNCGTT 590 GTAGTTTTTG GAGCTTTTCA GC 862 |||||||||| |||||||||| || GTAGTTTTTG GAGCTTTTCA GC 612 hqPGS_C06HBa0054K13.1-1+_SGN-E279446+ (1 108,429 634,733 862) ******************************************************************************** EST sequence 14 +strand 513 n (File: SGN-E244435+) 1 GCTGATGAAC AAAAGTATAT TAAGGACCAT GTGGAACCTG ATGCCATTGC TGCTTACTTG 61 AAGGATTACA AGGAAGGAAA ACTGAAGCCA CATGTGAAGT CAGAGCCCAT CCCTGAAGTC 121 AATGACGAAC CTGTTAAGGT GGTTGTTAGG GATACCCTCC AGGATATGGT TTACAAATCG 181 GGAAAAAATG TGCTGTTAGA GTTCTATGCA CCTTGGTGTG GCCACTGCAA GAGTCTGGCT 241 CCAATTTTGG ATGAAGAGGC TGTATCATTT GAAAGCGATC CTGATGTTCT CATTGCAAAA 301 CTGGACGCAA CCGTAAATGA TCTCCCAAAA GGTGACTTTG ATGATCAGGG ATTCCCTACT 361 ATGTACTTCA GATCCGCCTC TGGTAACTTG TCACAGGACA ATGGTGAGAG AACAAATGAG 421 GCTATCATCG AATTCATCGA GAAGAATCGT GGCTAGCCTG CTCAGTCAGA CTCTGCCAAA 481 GTGGATTCAG CAAAGGATGA ACTTTAGAGG ACT Predicted gene structure (within gDNA segment 1 to 1275): Exon 1 1 108 ( 108 n); cDNA 196 303 ( 108 n); score: 0.991 Intron 1 109 428 ( 320 n); Pd: 1.000 (s: 0.98), Pa: 0.935 (s: 0.94) Exon 2 429 634 ( 206 n); cDNA 304 509 ( 206 n); score: 0.966 MATCH C06HBa0054K13.1-1+ SGN-E244435+ 0.975 314 0.612 C PGS_C06HBa0054K13.1-1+_SGN-E244435+ (1 108,429 634) Alignment (genomic DNA sequence = upper lines): TTAGAGTTCT ATGCACCTTG GTGTGGCCAC TGCAAGAGTC TGGCTCCAAT TTTGGATGAA 60 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTAGAGTTCT ATGCACCTTG GTGTGGCCAC TGCAAGAGTC TGGCTCCAAT TTTGGATGAA 255 GTGGCTGTAT CATTTGAAAG CGATCCTGAT GTTCTCATTG CAAAACTGGT AAGAACTTTT 120 | |||||||| |||||||||| |||||||||| |||||||||| |||||||| GAGGCTGTAT CATTTGAAAG CGATCCTGAT GTTCTCATTG CAAAACTG.. .......... 303 TTCATAAACT AAACATGGAT ATTTGATGCA TGTATCTACT TCATCCTTTG TTACATTAAG 180 .......... .......... .......... .......... .......... .......... 303 TAACGGCATA ATAATCAAGA AAGAATGTGT AGAATTAGAA TCGGGTTTTT AGTATAAAAA 240 .......... .......... .......... .......... .......... .......... 303 TCAGAAAGAA CGGGGTGGAC ATTTTATCTT TGATGTTATG GATTTCGTTG TTAGAGAGAT 300 .......... .......... .......... .......... .......... .......... 303 TTTTAGTAGA AAACATCTGT AAAGTGTATC AAAAAAGAAG GTTTGTATGG CTTAAACACG 360 .......... .......... .......... .......... .......... .......... 303 ATTAGCAGTT GTAATGCACA GGACATGTAT TTGTTGTCAT TTCCTCTCAC CTGCTTCCTC 420 .......... .......... .......... .......... .......... .......... 303 ATTTACAGGA CGCAACCGCA AATGATCTCC CGAAAGGTGA CTTTGATGTT CAGGGATTCC 480 || |||||||| | |||||||||| | |||||||| |||||||| | |||||||||| ........GA CGCAACCGTA AATGATCTCC CAAAAGGTGA CTTTGATGAT CAGGGATTCC 355 CTACTATGTA CTTCAGATCC GCCTCTGGTA ACTTGTCACA GTACAATGGT GAGAGAACAA 540 |||||||||| |||||||||| |||||||||| |||||||||| | |||||||| |||||||||| CTACTATGTA CTTCAGATCC GCCTCTGGTA ACTTGTCACA GGACAATGGT GAGAGAACAA 415 AAGAGGCTAT CATCGAATTC ATCGAGAAGA ATCGTGGCAA GCCTGCTCAG TCAGACTCTG 600 | |||||||| |||||||||| |||||||||| |||||||| | |||||||||| |||||||||| ATGAGGCTAT CATCGAATTC ATCGAGAAGA ATCGTGGCTA GCCTGCTCAG TCAGACTCTG 475 CCAAAGTCGA TTCAGCAAAG GATGAACTTT AGAG 634 ||||||| || |||||||||| |||||||||| |||| CCAAAGTGGA TTCAGCAAAG GATGAACTTT AGAG 509 hqPGS_C06HBa0054K13.1-1+_SGN-E244435+ (1 108,429 634) ******************************************************************************** EST sequence 4 +strand 582 n (File: SGN-E211166+) 1 GATGTTGAGG CTGGTCAAGG TGCTTTTGAG TACTTCGGAC TGAAGCCGGA ACAGGCACCT 61 GTGATCATCA TAATGGACGC TGATGAACAA AAGTATATTA AGGACCATGT GGAACCTGAT 121 GCCATTGCTG CTTACTTGAA GGATTACAAG GAAGGAAAAC TGAAGCCACA TGTGAAGTCA 181 GAGCCCATCC CTGAAGTCAA TGACGAACCT GTTAAGGTGG TTGTTAGGGA TACCCTCCAG 241 GATATGGTTT ACAAATCGGG AAAAAATGTG CTGTTAGAGT TCTATGCACC TTGGTGTGGC 301 CACTGCAAGA GTCTGGCTCC AATTTTGGAT GAAGTGGCTG TATCATTTGA AAGCGATCCT 361 GATGTTCTCA TTGCAAAACT GGACGCAACC GCAAATGATC TCCCGAAAGG TGACTTTGAT 421 GTTCAGGGAT TCCCTACTAT GTACTTCAGA TCCGCCTCTG GTAACTTGTC ACAGTACAAT 481 GGTGAGAGAA ACAAAGAAGC TATCATCGAA TTCATCGAGA AGAATCGTGG CAAGCCTGCT 541 CAGTCAGACT CTGCCAAAGT CGATTCAGCA AAGGATGAAC TT Predicted gene structure (within gDNA segment 1 to 1239): Exon 1 1 108 ( 108 n); cDNA 274 381 ( 108 n); score: 1.000 Intron 1 109 428 ( 320 n); Pd: 1.000 (s: 1.00), Pa: 0.935 (s: 1.00) Exon 2 429 629 ( 201 n); cDNA 382 582 ( 201 n); score: 0.985 MATCH C06HBa0054K13.1-1+ SGN-E211166+ 0.990 309 0.531 C PGS_C06HBa0054K13.1-1+_SGN-E211166+ (1 108,429 629) Alignment (genomic DNA sequence = upper lines): TTAGAGTTCT ATGCACCTTG GTGTGGCCAC TGCAAGAGTC TGGCTCCAAT TTTGGATGAA 60 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTAGAGTTCT ATGCACCTTG GTGTGGCCAC TGCAAGAGTC TGGCTCCAAT TTTGGATGAA 333 GTGGCTGTAT CATTTGAAAG CGATCCTGAT GTTCTCATTG CAAAACTGGT AAGAACTTTT 120 |||||||||| |||||||||| |||||||||| |||||||||| |||||||| GTGGCTGTAT CATTTGAAAG CGATCCTGAT GTTCTCATTG CAAAACTG.. .......... 381 TTCATAAACT AAACATGGAT ATTTGATGCA TGTATCTACT TCATCCTTTG TTACATTAAG 180 .......... .......... .......... .......... .......... .......... 381 TAACGGCATA ATAATCAAGA AAGAATGTGT AGAATTAGAA TCGGGTTTTT AGTATAAAAA 240 .......... .......... .......... .......... .......... .......... 381 TCAGAAAGAA CGGGGTGGAC ATTTTATCTT TGATGTTATG GATTTCGTTG TTAGAGAGAT 300 .......... .......... .......... .......... .......... .......... 381 TTTTAGTAGA AAACATCTGT AAAGTGTATC AAAAAAGAAG GTTTGTATGG CTTAAACACG 360 .......... .......... .......... .......... .......... .......... 381 ATTAGCAGTT GTAATGCACA GGACATGTAT TTGTTGTCAT TTCCTCTCAC CTGCTTCCTC 420 .......... .......... .......... .......... .......... .......... 381 ATTTACAGGA CGCAACCGCA AATGATCTCC CGAAAGGTGA CTTTGATGTT CAGGGATTCC 480 || |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ........GA CGCAACCGCA AATGATCTCC CGAAAGGTGA CTTTGATGTT CAGGGATTCC 433 CTACTATGTA CTTCAGATCC GCCTCTGGTA ACTTGTCACA GTACAATGGT GAGAGAACAA 540 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||| | CTACTATGTA CTTCAGATCC GCCTCTGGTA ACTTGTCACA GTACAATGGT GAGAGAAACA 493 AAGAGGCTAT CATCGAATTC ATCGAGAAGA ATCGTGGCAA GCCTGCTCAG TCAGACTCTG 600 |||| ||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGAAGCTAT CATCGAATTC ATCGAGAAGA ATCGTGGCAA GCCTGCTCAG TCAGACTCTG 553 CCAAAGTCGA TTCAGCAAAG GATGAACTT 629 |||||||||| |||||||||| ||||||||| CCAAAGTCGA TTCAGCAAAG GATGAACTT 582 hqPGS_C06HBa0054K13.1-1+_SGN-E211166+ (1 108,429 629) ******************************************************************************** EST sequence 23 +strand 537 n (File: SGN-E273849+) 1 CTGGTCAAGG TGCTTTTGAG TACTTCGGAC TGAAGCCGGA ACAGGCACCT GTGATCATCA 61 TAATGGACGC TGATGAACAA AAGTATATTA AGGACCATGT GGAACCTGAT GCCATTGCTG 121 CTTACTTGAA GGATTACAAG GAAGGAAAAC TGAAGCCACA TGTGAAGTCA GAGCCCATCC 181 CTGAAGTCAA TGACGAACCT GTTAAGGTGG TTGTTAGGGA TACCCTCCAG GATATGGTTT 241 ACAAATCGGG AAAAAATGTG CTGTTAGAGT TCTATGCACC TTGGTGTGGC CACTGCAAGA 301 GTCTGGCTCC AATTTTGGAT GAAGTGGCTG TATCATTTGA AAGCGATCCT GATGTTCTCA 361 TTGCAAAACT GGACGCAACC GCAAATGATC TCCCGAAAGG TGACTTTGAT GTTCAGGGAT 421 TCCCTACTAT GTACTTCAGA TCCGCCTCTG GTAACTTGTC ACAGTACAAT GGTGAGAGAA 481 CAAAAGAGGC TATCATCGAA TTCATCGAGA AGAATCGTGG CAAGCCTGCT CAGTCAG Predicted gene structure (within gDNA segment 1 to 1204): Exon 1 1 108 ( 108 n); cDNA 264 371 ( 108 n); score: 1.000 Intron 1 109 428 ( 320 n); Pd: 1.000 (s: 1.00), Pa: 0.935 (s: 1.00) Exon 2 429 594 ( 166 n); cDNA 372 537 ( 166 n); score: 1.000 MATCH C06HBa0054K13.1-1+ SGN-E273849+ 1.000 274 0.510 C PGS_C06HBa0054K13.1-1+_SGN-E273849+ (1 108,429 594) Alignment (genomic DNA sequence = upper lines): TTAGAGTTCT ATGCACCTTG GTGTGGCCAC TGCAAGAGTC TGGCTCCAAT TTTGGATGAA 60 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTAGAGTTCT ATGCACCTTG GTGTGGCCAC TGCAAGAGTC TGGCTCCAAT TTTGGATGAA 323 GTGGCTGTAT CATTTGAAAG CGATCCTGAT GTTCTCATTG CAAAACTGGT AAGAACTTTT 120 |||||||||| |||||||||| |||||||||| |||||||||| |||||||| GTGGCTGTAT CATTTGAAAG CGATCCTGAT GTTCTCATTG CAAAACTG.. .......... 371 TTCATAAACT AAACATGGAT ATTTGATGCA TGTATCTACT TCATCCTTTG TTACATTAAG 180 .......... .......... .......... .......... .......... .......... 371 TAACGGCATA ATAATCAAGA AAGAATGTGT AGAATTAGAA TCGGGTTTTT AGTATAAAAA 240 .......... .......... .......... .......... .......... .......... 371 TCAGAAAGAA CGGGGTGGAC ATTTTATCTT TGATGTTATG GATTTCGTTG TTAGAGAGAT 300 .......... .......... .......... .......... .......... .......... 371 TTTTAGTAGA AAACATCTGT AAAGTGTATC AAAAAAGAAG GTTTGTATGG CTTAAACACG 360 .......... .......... .......... .......... .......... .......... 371 ATTAGCAGTT GTAATGCACA GGACATGTAT TTGTTGTCAT TTCCTCTCAC CTGCTTCCTC 420 .......... .......... .......... .......... .......... .......... 371 ATTTACAGGA CGCAACCGCA AATGATCTCC CGAAAGGTGA CTTTGATGTT CAGGGATTCC 480 || |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ........GA CGCAACCGCA AATGATCTCC CGAAAGGTGA CTTTGATGTT CAGGGATTCC 423 CTACTATGTA CTTCAGATCC GCCTCTGGTA ACTTGTCACA GTACAATGGT GAGAGAACAA 540 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTACTATGTA CTTCAGATCC GCCTCTGGTA ACTTGTCACA GTACAATGGT GAGAGAACAA 483 AAGAGGCTAT CATCGAATTC ATCGAGAAGA ATCGTGGCAA GCCTGCTCAG TCAG 594 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||| AAGAGGCTAT CATCGAATTC ATCGAGAAGA ATCGTGGCAA GCCTGCTCAG TCAG 537 hqPGS_C06HBa0054K13.1-1+_SGN-E273849+ (1 108,429 594) ******************************************************************************** EST sequence 1 +strand 273 n (File: SGN-E351306+) 1 ACAAATCGGG AAAAAATGTG CTGTTAGAGT TCTATGCACC TTGGTGTGGC CACTGCAAGA 61 GTCTGGCTCC AATTTTGGAT GAAGTGGCTG TATCATTTGA AAGCGATCCT GATGTTCTCA 121 TTGCAAAACT GGACGCAACC GCAAATGATC TCCCGAAAGG TGACTTTGAT GGTCAGGGAT 181 TCCCTACTAT GTACTTCAGA ACCCCCTCTG GTAACTTGTC CCAGTACCAT GGTGAAAAAA 241 CCAAAAAAGG TATCCTCCAA TTCATCCAAA AAA Predicted gene structure (within gDNA segment 1 to 1837): Exon 1 1 108 ( 108 n); cDNA 24 131 ( 108 n); score: 1.000 Intron 1 109 428 ( 320 n); Pd: 1.000 (s: 1.00), Pa: 0.935 (s: 0.98) Exon 2 429 568 ( 140 n); cDNA 132 271 ( 140 n); score: 0.893 MATCH C06HBa0054K13.1-1+ SGN-E351306+ 0.940 248 0.908 C PGS_C06HBa0054K13.1-1+_SGN-E351306+ (1 108,429 568) Alignment (genomic DNA sequence = upper lines): TTAGAGTTCT ATGCACCTTG GTGTGGCCAC TGCAAGAGTC TGGCTCCAAT TTTGGATGAA 60 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTAGAGTTCT ATGCACCTTG GTGTGGCCAC TGCAAGAGTC TGGCTCCAAT TTTGGATGAA 83 GTGGCTGTAT CATTTGAAAG CGATCCTGAT GTTCTCATTG CAAAACTGGT AAGAACTTTT 120 |||||||||| |||||||||| |||||||||| |||||||||| |||||||| GTGGCTGTAT CATTTGAAAG CGATCCTGAT GTTCTCATTG CAAAACTG.. .......... 131 TTCATAAACT AAACATGGAT ATTTGATGCA TGTATCTACT TCATCCTTTG TTACATTAAG 180 .......... .......... .......... .......... .......... .......... 131 TAACGGCATA ATAATCAAGA AAGAATGTGT AGAATTAGAA TCGGGTTTTT AGTATAAAAA 240 .......... .......... .......... .......... .......... .......... 131 TCAGAAAGAA CGGGGTGGAC ATTTTATCTT TGATGTTATG GATTTCGTTG TTAGAGAGAT 300 .......... .......... .......... .......... .......... .......... 131 TTTTAGTAGA AAACATCTGT AAAGTGTATC AAAAAAGAAG GTTTGTATGG CTTAAACACG 360 .......... .......... .......... .......... .......... .......... 131 ATTAGCAGTT GTAATGCACA GGACATGTAT TTGTTGTCAT TTCCTCTCAC CTGCTTCCTC 420 .......... .......... .......... .......... .......... .......... 131 ATTTACAGGA CGCAACCGCA AATGATCTCC CGAAAGGTGA CTTTGATGTT CAGGGATTCC 480 || |||||||||| |||||||||| |||||||||| |||||||| | |||||||||| ........GA CGCAACCGCA AATGATCTCC CGAAAGGTGA CTTTGATGGT CAGGGATTCC 183 CTACTATGTA CTTCAGATCC GCCTCTGGTA ACTTGTCACA GTACAATGGT GAGAGAACAA 540 |||||||||| ||||||| || ||||||||| ||||||| || |||| ||||| || | ||| | CTACTATGTA CTTCAGAACC CCCTCTGGTA ACTTGTCCCA GTACCATGGT GAAAAAACCA 243 AAGAGGCTAT CATCGAATTC ATCGAGAA 568 || | | ||| | || ||||| ||| | || AAAAAGGTAT CCTCCAATTC ATCCAAAA 271 hqPGS_C06HBa0054K13.1-1+_SGN-E351306+ (1 108,429 568) ******************************************************************************** EST sequence 22 +strand 483 n (File: SGN-E273841+) 1 CTGGTCAAGG TGCTTTTGAG TACTTCGGAC TGAAGCCGGA ACAGGCACCT GTGATCATCA 61 TAATGGACGC TGATGAACAA AAGTATATTA AGGACCATGT GGAACCTGAT GCCATTGCTG 121 CTTACTTGAA GGATTACAAG GAAGGAAAAC TGAAGCCACA TGTGAAGTCA GAGCCCATCC 181 CTGAAGTCAA TGACGAACCT GTTAAGGTGG TTGTTAGGGA TACCCTCCAG GATATGGTTT 241 ACAAATCGGG AAAAAATGTG CTGTTAGAGT TCTATGCACC TTGGTGTGGC CACTGCAAGA 301 GTCTGGCTCC AATTTTGGAT GAAGTGGCTG TATCATTTGA AAGCGATCCT GATGTTCTCA 361 TTGCAAAACT GGACGCAACC GCAAATGATC TCCCGAAAGG TGACTTTGAT GTTCAGGGAT 421 TCCCTACTAT GTACTTCAGA TCCGCCTCTG GTAACTTGTC ACAGTACAAT GGTGAGAGAA 481 CAA Predicted gene structure (within gDNA segment 1 to 1150): Exon 1 1 108 ( 108 n); cDNA 264 371 ( 108 n); score: 1.000 Intron 1 109 428 ( 320 n); Pd: 1.000 (s: 1.00), Pa: 0.935 (s: 1.00) Exon 2 429 540 ( 112 n); cDNA 372 483 ( 112 n); score: 1.000 MATCH C06HBa0054K13.1-1+ SGN-E273841+ 1.000 220 0.455 C PGS_C06HBa0054K13.1-1+_SGN-E273841+ (1 108,429 540) Alignment (genomic DNA sequence = upper lines): TTAGAGTTCT ATGCACCTTG GTGTGGCCAC TGCAAGAGTC TGGCTCCAAT TTTGGATGAA 60 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTAGAGTTCT ATGCACCTTG GTGTGGCCAC TGCAAGAGTC TGGCTCCAAT TTTGGATGAA 323 GTGGCTGTAT CATTTGAAAG CGATCCTGAT GTTCTCATTG CAAAACTGGT AAGAACTTTT 120 |||||||||| |||||||||| |||||||||| |||||||||| |||||||| GTGGCTGTAT CATTTGAAAG CGATCCTGAT GTTCTCATTG CAAAACTG.. .......... 371 TTCATAAACT AAACATGGAT ATTTGATGCA TGTATCTACT TCATCCTTTG TTACATTAAG 180 .......... .......... .......... .......... .......... .......... 371 TAACGGCATA ATAATCAAGA AAGAATGTGT AGAATTAGAA TCGGGTTTTT AGTATAAAAA 240 .......... .......... .......... .......... .......... .......... 371 TCAGAAAGAA CGGGGTGGAC ATTTTATCTT TGATGTTATG GATTTCGTTG TTAGAGAGAT 300 .......... .......... .......... .......... .......... .......... 371 TTTTAGTAGA AAACATCTGT AAAGTGTATC AAAAAAGAAG GTTTGTATGG CTTAAACACG 360 .......... .......... .......... .......... .......... .......... 371 ATTAGCAGTT GTAATGCACA GGACATGTAT TTGTTGTCAT TTCCTCTCAC CTGCTTCCTC 420 .......... .......... .......... .......... .......... .......... 371 ATTTACAGGA CGCAACCGCA AATGATCTCC CGAAAGGTGA CTTTGATGTT CAGGGATTCC 480 || |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ........GA CGCAACCGCA AATGATCTCC CGAAAGGTGA CTTTGATGTT CAGGGATTCC 423 CTACTATGTA CTTCAGATCC GCCTCTGGTA ACTTGTCACA GTACAATGGT GAGAGAACAA 540 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTACTATGTA CTTCAGATCC GCCTCTGGTA ACTTGTCACA GTACAATGGT GAGAGAACAA 483 hqPGS_C06HBa0054K13.1-1+_SGN-E273841+ (1 108,429 540) ******************************************************************************** EST sequence 18 +strand 541 n (File: SGN-E208077+) 1 ACAACGATGT TGCTGTGATT TACAAAGGGG ATGGGGTGAG CTTTCTCTTG GGTGATGTTG 61 AGGCTGGTCA AGGTGCTTTT GAGTACTTCG GACTGAAGCC GGAACAGGCA CCTGTGATCA 121 TCATAATGGA CGCTGATGAA CAAAAGTATA TTAAGGACCA TGTGGAACCT GATGCCATTG 181 CTGCTTACTT GAAGGATTAC AAGGAAGGAA AACTGAAGCC ACATGTGAAG TCAGAGCCCA 241 TCCCTGAAGT CAATGACGAA CCTGTTAAGG TGGTTGTTAG GGATACCCTC CAGGATATGG 301 TTTACAAATC GGGAAAAAAT GTGCTGTTAG AGTTCTATGC ACCTTGGTGT GGCCACTGCA 361 AGAGTCTGGC TCCAATTTTG GATGAAGTGG CTGTATCATT TGAAAGCGAT CCTGATGTTC 421 TCATTGCAAA ACTGGACGCA ACCGCAAATG ATCTCCCGAA AGGTGACTNT GATGTTCAGG 481 GATTCCCTAC TATGTACTTC AGATCCGCCT CTGGTAACTT GTCACAGTAC AATGGTGAGA 541 G Predicted gene structure (within gDNA segment 1 to 1145): Exon 1 1 108 ( 108 n); cDNA 327 434 ( 108 n); score: 1.000 Intron 1 109 428 ( 320 n); Pd: 1.000 (s: 1.00), Pa: 0.935 (s: 0.98) Exon 2 429 535 ( 107 n); cDNA 435 541 ( 107 n); score: 0.991 MATCH C06HBa0054K13.1-1+ SGN-E208077+ 0.995 215 0.397 C PGS_C06HBa0054K13.1-1+_SGN-E208077+ (1 108,429 535) Alignment (genomic DNA sequence = upper lines): TTAGAGTTCT ATGCACCTTG GTGTGGCCAC TGCAAGAGTC TGGCTCCAAT TTTGGATGAA 60 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTAGAGTTCT ATGCACCTTG GTGTGGCCAC TGCAAGAGTC TGGCTCCAAT TTTGGATGAA 386 GTGGCTGTAT CATTTGAAAG CGATCCTGAT GTTCTCATTG CAAAACTGGT AAGAACTTTT 120 |||||||||| |||||||||| |||||||||| |||||||||| |||||||| GTGGCTGTAT CATTTGAAAG CGATCCTGAT GTTCTCATTG CAAAACTG.. .......... 434 TTCATAAACT AAACATGGAT ATTTGATGCA TGTATCTACT TCATCCTTTG TTACATTAAG 180 .......... .......... .......... .......... .......... .......... 434 TAACGGCATA ATAATCAAGA AAGAATGTGT AGAATTAGAA TCGGGTTTTT AGTATAAAAA 240 .......... .......... .......... .......... .......... .......... 434 TCAGAAAGAA CGGGGTGGAC ATTTTATCTT TGATGTTATG GATTTCGTTG TTAGAGAGAT 300 .......... .......... .......... .......... .......... .......... 434 TTTTAGTAGA AAACATCTGT AAAGTGTATC AAAAAAGAAG GTTTGTATGG CTTAAACACG 360 .......... .......... .......... .......... .......... .......... 434 ATTAGCAGTT GTAATGCACA GGACATGTAT TTGTTGTCAT TTCCTCTCAC CTGCTTCCTC 420 .......... .......... .......... .......... .......... .......... 434 ATTTACAGGA CGCAACCGCA AATGATCTCC CGAAAGGTGA CTTTGATGTT CAGGGATTCC 480 || |||||||||| |||||||||| |||||||||| || ||||||| |||||||||| ........GA CGCAACCGCA AATGATCTCC CGAAAGGTGA CTNTGATGTT CAGGGATTCC 486 CTACTATGTA CTTCAGATCC GCCTCTGGTA ACTTGTCACA GTACAATGGT GAGAG 535 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||| CTACTATGTA CTTCAGATCC GCCTCTGGTA ACTTGTCACA GTACAATGGT GAGAG 541 hqPGS_C06HBa0054K13.1-1+_SGN-E208077+ (1 108,429 535) ******************************************************************************** EST sequence 5 +strand 495 n (File: SGN-E326919+) 1 CTTTCTCTTG GGTGATGTTG AGGCTGGTCA AGGTGCTTTT GAGTACTTCG GACTGAAGCC 61 GGAACAGGCA CCTGTGATCA TCATAATGGA CGCTGATGAA CAAAAGTATA TTAAGGACCA 121 TGTGGAACCT GATGCCATTG CTGCTTACTT GAAGGATTAC AAGGAAGGAA AACTGAAGCC 181 ACATGTGAAG TCAGAGCCCA TCCCTGAAGT CAATGACGAA CCTGTTAAGG TGGTTGTTAG 241 GGATACCCTC CAGGATATGG TTTACAAATC GGGAAAAAAT GTGCTGTTAG AGTTCTATGC 301 ACCTTGGTGT GGCCACTGCA AGAGTCTGGC TCCAATTTTG GATGAAGTGG CTGTATCATT 361 TGAAAGCGAT CCTGATGTTC TCATTGCNAA ACTGGACGCA ACCCGCAATG ATCTCCCGAA 421 AGGTGACTTT GATGTTCAGG NATTCCCTAC TATGTACTTC AGATCCGCCT CTGGTAACTT 481 GTCACAGTAC AATGG Predicted gene structure (within gDNA segment 1 to 1139): Exon 1 1 108 ( 108 n); cDNA 287 394 ( 108 n); score: 0.991 Intron 1 109 428 ( 320 n); Pd: 1.000 (s: 0.98), Pa: 0.935 (s: 0.92) Exon 2 429 529 ( 101 n); cDNA 395 495 ( 101 n); score: 0.960 MATCH C06HBa0054K13.1-1+ SGN-E326919+ 0.976 209 0.422 C PGS_C06HBa0054K13.1-1+_SGN-E326919+ (1 108,429 529) Alignment (genomic DNA sequence = upper lines): TTAGAGTTCT ATGCACCTTG GTGTGGCCAC TGCAAGAGTC TGGCTCCAAT TTTGGATGAA 60 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTAGAGTTCT ATGCACCTTG GTGTGGCCAC TGCAAGAGTC TGGCTCCAAT TTTGGATGAA 346 GTGGCTGTAT CATTTGAAAG CGATCCTGAT GTTCTCATTG CAAAACTGGT AAGAACTTTT 120 |||||||||| |||||||||| |||||||||| |||||||||| | |||||| GTGGCTGTAT CATTTGAAAG CGATCCTGAT GTTCTCATTG CNAAACTG.. .......... 394 TTCATAAACT AAACATGGAT ATTTGATGCA TGTATCTACT TCATCCTTTG TTACATTAAG 180 .......... .......... .......... .......... .......... .......... 394 TAACGGCATA ATAATCAAGA AAGAATGTGT AGAATTAGAA TCGGGTTTTT AGTATAAAAA 240 .......... .......... .......... .......... .......... .......... 394 TCAGAAAGAA CGGGGTGGAC ATTTTATCTT TGATGTTATG GATTTCGTTG TTAGAGAGAT 300 .......... .......... .......... .......... .......... .......... 394 TTTTAGTAGA AAACATCTGT AAAGTGTATC AAAAAAGAAG GTTTGTATGG CTTAAACACG 360 .......... .......... .......... .......... .......... .......... 394 ATTAGCAGTT GTAATGCACA GGACATGTAT TTGTTGTCAT TTCCTCTCAC CTGCTTCCTC 420 .......... .......... .......... .......... .......... .......... 394 ATTTACAGGA CGCAACCGCA AATGATCTCC CGAAAGGTGA CTTTGATGTT CAGGGATTCC 480 || ||||||| |||||||||| |||||||||| |||||||||| |||| ||||| ........GA CGCAACCCGC AATGATCTCC CGAAAGGTGA CTTTGATGTT CAGGNATTCC 446 CTACTATGTA CTTCAGATCC GCCTCTGGTA ACTTGTCACA GTACAATGG 529 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| CTACTATGTA CTTCAGATCC GCCTCTGGTA ACTTGTCACA GTACAATGG 495 hqPGS_C06HBa0054K13.1-1+_SGN-E326919+ (1 108,429 529) ******************************************************************************** EST sequence 3 +strand 468 n (File: SGN-E250966+) 1 TTGGGTGATG TTGAGGCTGG TCAAGGTGCT TTTGAGTACT TCGGACTGAA GCCGGAACAG 61 GCACCTGTGA TCATCATAAT GGACGCTGAT GAACAAAAGT ATATTAAGGA CCATGTGGAA 121 CCTGATGCCA TTGCTGCTTA CTTGAAGGAT TACAAGGAAG GAAAACTGAA GCCACATGTG 181 AAGTCAGAGC CCATCCCTGA AGTCAATGAC GAACCTGTTA AGGTGGTTGT TAGGGATACC 241 CTCCAGGATA TGGTTTACAA ATCGGGAAAA AATGTGCTGT TAGAGTTCTA TGCACCTTGG 301 TGTGGCCACT GCAAGAGTCT GGCTCCAATT TTGGATGAAG TGGCTGTATC ATTTGAAAGC 361 GATCCTGATG TTCTCATTGC AAAACTGGAC GCAACCGCAA ATGATCTCCC GAAAGGTGAC 421 TTTGATGTTC AGGGATTCCC TACTATGTAC TTCAGATCCG CCTCTGGT Predicted gene structure (within gDNA segment 1 to 1119): Exon 1 1 108 ( 108 n); cDNA 280 387 ( 108 n); score: 1.000 Intron 1 109 428 ( 320 n); Pd: 1.000 (s: 1.00), Pa: 0.935 (s: 1.00) Exon 2 429 509 ( 81 n); cDNA 388 468 ( 81 n); score: 1.000 MATCH C06HBa0054K13.1-1+ SGN-E250966+ 1.000 189 0.404 C PGS_C06HBa0054K13.1-1+_SGN-E250966+ (1 108,429 509) Alignment (genomic DNA sequence = upper lines): TTAGAGTTCT ATGCACCTTG GTGTGGCCAC TGCAAGAGTC TGGCTCCAAT TTTGGATGAA 60 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTAGAGTTCT ATGCACCTTG GTGTGGCCAC TGCAAGAGTC TGGCTCCAAT TTTGGATGAA 339 GTGGCTGTAT CATTTGAAAG CGATCCTGAT GTTCTCATTG CAAAACTGGT AAGAACTTTT 120 |||||||||| |||||||||| |||||||||| |||||||||| |||||||| GTGGCTGTAT CATTTGAAAG CGATCCTGAT GTTCTCATTG CAAAACTG.. .......... 387 TTCATAAACT AAACATGGAT ATTTGATGCA TGTATCTACT TCATCCTTTG TTACATTAAG 180 .......... .......... .......... .......... .......... .......... 387 TAACGGCATA ATAATCAAGA AAGAATGTGT AGAATTAGAA TCGGGTTTTT AGTATAAAAA 240 .......... .......... .......... .......... .......... .......... 387 TCAGAAAGAA CGGGGTGGAC ATTTTATCTT TGATGTTATG GATTTCGTTG TTAGAGAGAT 300 .......... .......... .......... .......... .......... .......... 387 TTTTAGTAGA AAACATCTGT AAAGTGTATC AAAAAAGAAG GTTTGTATGG CTTAAACACG 360 .......... .......... .......... .......... .......... .......... 387 ATTAGCAGTT GTAATGCACA GGACATGTAT TTGTTGTCAT TTCCTCTCAC CTGCTTCCTC 420 .......... .......... .......... .......... .......... .......... 387 ATTTACAGGA CGCAACCGCA AATGATCTCC CGAAAGGTGA CTTTGATGTT CAGGGATTCC 480 || |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ........GA CGCAACCGCA AATGATCTCC CGAAAGGTGA CTTTGATGTT CAGGGATTCC 439 CTACTATGTA CTTCAGATCC GCCTCTGGT 509 |||||||||| |||||||||| ||||||||| CTACTATGTA CTTCAGATCC GCCTCTGGT 468 hqPGS_C06HBa0054K13.1-1+_SGN-E250966+ (1 108,429 509) ******************************************************************************** EST sequence 12 +strand 519 n (File: SGN-E555031+) 1 CAAGAGTCTG GCTCCAATTT TGGATGAAGT GGCTGTATCA TTTGAAAGCG ATCCTGATGT 61 TCTCATTGCA AAACTGGACG CAACCGCAAA TGATCTCCCG AAAGGTGACT TTGATGTTCA 121 GGGATTCCCT ACTATGTACT TCAGATCCGC CTCTGGTAAC TTGTCACAGT ACAATGGTGA 181 GAGAACAAAA GAGGCTATCA TCGAATTCAT CGAGAAGAAT CGTGGCAAGC CTGCTCAGTC 241 AGACTCTGCC AAAGTCGATT CAGCAAAGGA TGAACTTTAG AGGACTCTAG GAACATTGTG 301 TACTGGTGGA TTCAAGTTTT GTTGGAAGCA TTGTGTTTCT GGTGAATTCG ACCTCCCACC 361 GGACTACTGC TCTCTCCCAA CGCTTCCGTT GTAGTTTTTG GAGCTTTTCA GCGCCAATAA 421 AACGGTTGTA TGTATCCATT TTGTGTATCG AATGTAGCTG GATTATGAGT TTATATTATA 481 TCTATTGAGA AGTTCTCCAA CTTTATAGTA AAAAAAAAA Predicted gene structure (within gDNA segment 1 to 1660): Exon 1 33 108 ( 76 n); cDNA 1 76 ( 76 n); score: 1.000 Intron 1 109 428 ( 320 n); Pd: 1.000 (s: 1.00), Pa: 0.935 (s: 1.00) Exon 2 429 634 ( 206 n); cDNA 77 282 ( 206 n); score: 1.000 Intron 2 635 732 ( 98 n); Pd: 0.988 (s: 1.00), Pa: 0.846 (s: 1.00) Exon 3 733 960 ( 228 n); cDNA 283 510 ( 228 n); score: 1.000 MATCH C06HBa0054K13.1-1+ SGN-E555031+ 1.000 510 0.983 C PGS_C06HBa0054K13.1-1+_SGN-E555031+ (33 108,429 634,733 960) Alignment (genomic DNA sequence = upper lines): CAAGAGTCTG GCTCCAATTT TGGATGAAGT GGCTGTATCA TTTGAAAGCG ATCCTGATGT 92 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAGAGTCTG GCTCCAATTT TGGATGAAGT GGCTGTATCA TTTGAAAGCG ATCCTGATGT 60 TCTCATTGCA AAACTGGTAA GAACTTTTTT CATAAACTAA ACATGGATAT TTGATGCATG 152 |||||||||| |||||| TCTCATTGCA AAACTG.... .......... .......... .......... .......... 76 TATCTACTTC ATCCTTTGTT ACATTAAGTA ACGGCATAAT AATCAAGAAA GAATGTGTAG 212 .......... .......... .......... .......... .......... .......... 76 AATTAGAATC GGGTTTTTAG TATAAAAATC AGAAAGAACG GGGTGGACAT TTTATCTTTG 272 .......... .......... .......... .......... .......... .......... 76 ATGTTATGGA TTTCGTTGTT AGAGAGATTT TTAGTAGAAA ACATCTGTAA AGTGTATCAA 332 .......... .......... .......... .......... .......... .......... 76 AAAAGAAGGT TTGTATGGCT TAAACACGAT TAGCAGTTGT AATGCACAGG ACATGTATTT 392 .......... .......... .......... .......... .......... .......... 76 GTTGTCATTT CCTCTCACCT GCTTCCTCAT TTACAGGACG CAACCGCAAA TGATCTCCCG 452 |||| |||||||||| |||||||||| .......... .......... .......... ......GACG CAACCGCAAA TGATCTCCCG 100 AAAGGTGACT TTGATGTTCA GGGATTCCCT ACTATGTACT TCAGATCCGC CTCTGGTAAC 512 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAGGTGACT TTGATGTTCA GGGATTCCCT ACTATGTACT TCAGATCCGC CTCTGGTAAC 160 TTGTCACAGT ACAATGGTGA GAGAACAAAA GAGGCTATCA TCGAATTCAT CGAGAAGAAT 572 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGTCACAGT ACAATGGTGA GAGAACAAAA GAGGCTATCA TCGAATTCAT CGAGAAGAAT 220 CGTGGCAAGC CTGCTCAGTC AGACTCTGCC AAAGTCGATT CAGCAAAGGA TGAACTTTAG 632 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGTGGCAAGC CTGCTCAGTC AGACTCTGCC AAAGTCGATT CAGCAAAGGA TGAACTTTAG 280 AGGTTTGGTT CTCTTCCTTA AAGCATCAAT TGTGATATCT GCCATTATTG GTTCTTTGTG 692 || AG........ .......... .......... .......... .......... .......... 282 CTACAGTAAT TGTAATTTAT ATTGATCTCC TCTTATTCAG GACTCTAGGA ACATTGTGTA 752 |||||||||| |||||||||| .......... .......... .......... .......... GACTCTAGGA ACATTGTGTA 302 CTGGTGGATT CAAGTTTTGT TGGAAGCATT GTGTTTCTGG TGAATTCGAC CTCCCACCGG 812 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGGTGGATT CAAGTTTTGT TGGAAGCATT GTGTTTCTGG TGAATTCGAC CTCCCACCGG 362 ACTACTGCTC TCTCCCAACG CTTCCGTTGT AGTTTTTGGA GCTTTTCAGC GCCAATAAAA 872 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACTACTGCTC TCTCCCAACG CTTCCGTTGT AGTTTTTGGA GCTTTTCAGC GCCAATAAAA 422 CGGTTGTATG TATCCATTTT GTGTATCGAA TGTAGCTGGA TTATGAGTTT ATATTATATC 932 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGGTTGTATG TATCCATTTT GTGTATCGAA TGTAGCTGGA TTATGAGTTT ATATTATATC 482 TATTGAGAAG TTCTCCAACT TTATAGTA 960 |||||||||| |||||||||| |||||||| TATTGAGAAG TTCTCCAACT TTATAGTA 510 hqPGS_C06HBa0054K13.1-1+_SGN-E555031+ (33 108,429 634,733 960) ******************************************************************************** EST sequence 20 +strand 612 n (File: SGN-E349477+) 1 CTGGCTCCAA TTTTGGATGA AGTGGCTGTA TCATTTGAAA GCGATCCTGA TGTTCTCATT 61 GCAAAACTGG ACGCAACCGC AAATGATCTC CCGAAAGGTG ACTTTGATGT TCAGGGATTC 121 CCTACTATGT ACTTCAGATC CGCCTCTGGT AACTTGTCAC AGTACAATGG TGAGAGAACA 181 AAAGAGGCTA TCATCGAATT CATCGAGAAG AATCGTGGCA AGCCTGCTCA GTCAGACTCT 241 GCCAAAGTCG ATTCAGCAAA GGATGAACTT TAGAGGACTC TAGGAACATT GTGTACTGGT 301 GGATTCAAGT TTTGTTGGAA GCATTGTGTT TCTGGTGAAT TCGACCTCCC ACCGGACTAC 361 TGCTCTCTCC CAACGCTTCC GTTGTAGTTT TTGGAGCTTT TCAGCGCCAA TAAAACGGTT 421 GTATGTATCC ATTTTGTGTA TCGAATGTAG CTGGATTATG AGTTTATATT ATATCTATTG 481 AGAAGTTCTC CAACTTTATA GTATCAGCAG TTGAAGTTAT CTTCTTTGTC CCAGAATGCT 541 ACTGTTGGAA TGTATGCCTC CTGTTGCAGT AAATAATGAT ACACAATAAT TAAAGAAGTT 601 CAAAAAAAAA AA Predicted gene structure (within gDNA segment 1 to 1751): Exon 1 40 108 ( 69 n); cDNA 1 69 ( 69 n); score: 1.000 Intron 1 109 428 ( 320 n); Pd: 1.000 (s: 1.00), Pa: 0.935 (s: 1.00) Exon 2 429 634 ( 206 n); cDNA 70 275 ( 206 n); score: 1.000 Intron 2 635 732 ( 98 n); Pd: 0.988 (s: 1.00), Pa: 0.846 (s: 1.00) Exon 3 733 1061 ( 329 n); cDNA 276 604 ( 329 n); score: 1.000 MATCH C06HBa0054K13.1-1+ SGN-E349477+ 1.000 604 0.987 C PGS_C06HBa0054K13.1-1+_SGN-E349477+ (40 108,429 634,733 1061) Alignment (genomic DNA sequence = upper lines): CTGGCTCCAA TTTTGGATGA AGTGGCTGTA TCATTTGAAA GCGATCCTGA TGTTCTCATT 99 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGGCTCCAA TTTTGGATGA AGTGGCTGTA TCATTTGAAA GCGATCCTGA TGTTCTCATT 60 GCAAAACTGG TAAGAACTTT TTTCATAAAC TAAACATGGA TATTTGATGC ATGTATCTAC 159 ||||||||| GCAAAACTG. .......... .......... .......... .......... .......... 69 TTCATCCTTT GTTACATTAA GTAACGGCAT AATAATCAAG AAAGAATGTG TAGAATTAGA 219 .......... .......... .......... .......... .......... .......... 69 ATCGGGTTTT TAGTATAAAA ATCAGAAAGA ACGGGGTGGA CATTTTATCT TTGATGTTAT 279 .......... .......... .......... .......... .......... .......... 69 GGATTTCGTT GTTAGAGAGA TTTTTAGTAG AAAACATCTG TAAAGTGTAT CAAAAAAGAA 339 .......... .......... .......... .......... .......... .......... 69 GGTTTGTATG GCTTAAACAC GATTAGCAGT TGTAATGCAC AGGACATGTA TTTGTTGTCA 399 .......... .......... .......... .......... .......... .......... 69 TTTCCTCTCA CCTGCTTCCT CATTTACAGG ACGCAACCGC AAATGATCTC CCGAAAGGTG 459 | |||||||||| |||||||||| |||||||||| .......... .......... .........G ACGCAACCGC AAATGATCTC CCGAAAGGTG 100 ACTTTGATGT TCAGGGATTC CCTACTATGT ACTTCAGATC CGCCTCTGGT AACTTGTCAC 519 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACTTTGATGT TCAGGGATTC CCTACTATGT ACTTCAGATC CGCCTCTGGT AACTTGTCAC 160 AGTACAATGG TGAGAGAACA AAAGAGGCTA TCATCGAATT CATCGAGAAG AATCGTGGCA 579 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTACAATGG TGAGAGAACA AAAGAGGCTA TCATCGAATT CATCGAGAAG AATCGTGGCA 220 AGCCTGCTCA GTCAGACTCT GCCAAAGTCG ATTCAGCAAA GGATGAACTT TAGAGGTTTG 639 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||| AGCCTGCTCA GTCAGACTCT GCCAAAGTCG ATTCAGCAAA GGATGAACTT TAGAG..... 275 GTTCTCTTCC TTAAAGCATC AATTGTGATA TCTGCCATTA TTGGTTCTTT GTGCTACAGT 699 .......... .......... .......... .......... .......... .......... 275 AATTGTAATT TATATTGATC TCCTCTTATT CAGGACTCTA GGAACATTGT GTACTGGTGG 759 ||||||| |||||||||| |||||||||| .......... .......... .......... ...GACTCTA GGAACATTGT GTACTGGTGG 302 ATTCAAGTTT TGTTGGAAGC ATTGTGTTTC TGGTGAATTC GACCTCCCAC CGGACTACTG 819 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTCAAGTTT TGTTGGAAGC ATTGTGTTTC TGGTGAATTC GACCTCCCAC CGGACTACTG 362 CTCTCTCCCA ACGCTTCCGT TGTAGTTTTT GGAGCTTTTC AGCGCCAATA AAACGGTTGT 879 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCTCTCCCA ACGCTTCCGT TGTAGTTTTT GGAGCTTTTC AGCGCCAATA AAACGGTTGT 422 ATGTATCCAT TTTGTGTATC GAATGTAGCT GGATTATGAG TTTATATTAT ATCTATTGAG 939 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGTATCCAT TTTGTGTATC GAATGTAGCT GGATTATGAG TTTATATTAT ATCTATTGAG 482 AAGTTCTCCA ACTTTATAGT ATCAGCAGTT GAAGTTATCT TCTTTGTCCC AGAATGCTAC 999 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGTTCTCCA ACTTTATAGT ATCAGCAGTT GAAGTTATCT TCTTTGTCCC AGAATGCTAC 542 TGTTGGAATG TATGCCTCCT GTTGCAGTAA ATAATGATAC ACAATAATTA AAGAAGTTCA 1059 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTTGGAATG TATGCCTCCT GTTGCAGTAA ATAATGATAC ACAATAATTA AAGAAGTTCA 602 AA 1061 || AA 604 hqPGS_C06HBa0054K13.1-1+_SGN-E349477+ (40 108,429 634,733 1061) ******************************************************************************** EST sequence 35 -strand 505 n (File: SGN-E288638-) 1 CTGGCTCCAA TTTTGGATAA AGTGGCTGTA TCATTTGAAA GCGATCCTTA TGTTCTCATT 61 GCAAAACTGG ACGCAACCGC AAATGATCTC CCGAAAGGTG ACTTTGATGT TCAGGGATTC 121 CCTACTATGT ACTTCAGATC CGCCTCTGGT AACTTGTCAC AGTACAATGG TGAGAGAACA 181 AAAGAGGCTA TCATCGAATT CATCGAGAAG AATCGTGGCA AGCCTGCTCA GTCAGACTCT 241 GCCAAAGTCG ATTCAGCAAA GGATGAACTT TAGAGGACTC TAGGAACATT GTGTACTGGT 301 GGATTCAAGT TTTGTTGGAA GCATTGTGTT TCTGGTGAAT TCGACCTCCC ACAGGACTAC 361 TGCTCTCTCC CAACGCTTCC GTTGTAGTTT TTGGAGCTTT TCAGCGCCAA TAAAACGGTT 421 GTATGTATCC ATTTTGTGTA TCGAATGTAG CTGGATTATG AGTTTATATT ATATCTATTG 481 AGAAAAAAAA AAAAAAAAAA CTCGA Predicted gene structure (within gDNA segment 1 to 1751): Exon 1 40 108 ( 69 n); cDNA 1 69 ( 69 n); score: 0.971 Intron 1 109 428 ( 320 n); Pd: 1.000 (s: 0.98), Pa: 0.935 (s: 1.00) Exon 2 429 634 ( 206 n); cDNA 70 275 ( 206 n); score: 1.000 Intron 2 635 732 ( 98 n); Pd: 0.988 (s: 1.00), Pa: 0.846 (s: 1.00) Exon 3 733 941 ( 209 n); cDNA 276 484 ( 209 n); score: 0.995 PPA cDNA 485 501 MATCH C06HBa0054K13.1-1+ SGN-E288638- 0.994 484 0.958 C PGS_C06HBa0054K13.1-1+_SGN-E288638- (40 108,429 634,733 941) Alignment (genomic DNA sequence = upper lines): CTGGCTCCAA TTTTGGATGA AGTGGCTGTA TCATTTGAAA GCGATCCTGA TGTTCTCATT 99 |||||||||| |||||||| | |||||||||| |||||||||| |||||||| | |||||||||| CTGGCTCCAA TTTTGGATAA AGTGGCTGTA TCATTTGAAA GCGATCCTTA TGTTCTCATT 60 GCAAAACTGG TAAGAACTTT TTTCATAAAC TAAACATGGA TATTTGATGC ATGTATCTAC 159 ||||||||| GCAAAACTG. .......... .......... .......... .......... .......... 69 TTCATCCTTT GTTACATTAA GTAACGGCAT AATAATCAAG AAAGAATGTG TAGAATTAGA 219 .......... .......... .......... .......... .......... .......... 69 ATCGGGTTTT TAGTATAAAA ATCAGAAAGA ACGGGGTGGA CATTTTATCT TTGATGTTAT 279 .......... .......... .......... .......... .......... .......... 69 GGATTTCGTT GTTAGAGAGA TTTTTAGTAG AAAACATCTG TAAAGTGTAT CAAAAAAGAA 339 .......... .......... .......... .......... .......... .......... 69 GGTTTGTATG GCTTAAACAC GATTAGCAGT TGTAATGCAC AGGACATGTA TTTGTTGTCA 399 .......... .......... .......... .......... .......... .......... 69 TTTCCTCTCA CCTGCTTCCT CATTTACAGG ACGCAACCGC AAATGATCTC CCGAAAGGTG 459 | |||||||||| |||||||||| |||||||||| .......... .......... .........G ACGCAACCGC AAATGATCTC CCGAAAGGTG 100 ACTTTGATGT TCAGGGATTC CCTACTATGT ACTTCAGATC CGCCTCTGGT AACTTGTCAC 519 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACTTTGATGT TCAGGGATTC CCTACTATGT ACTTCAGATC CGCCTCTGGT AACTTGTCAC 160 AGTACAATGG TGAGAGAACA AAAGAGGCTA TCATCGAATT CATCGAGAAG AATCGTGGCA 579 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTACAATGG TGAGAGAACA AAAGAGGCTA TCATCGAATT CATCGAGAAG AATCGTGGCA 220 AGCCTGCTCA GTCAGACTCT GCCAAAGTCG ATTCAGCAAA GGATGAACTT TAGAGGTTTG 639 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||| AGCCTGCTCA GTCAGACTCT GCCAAAGTCG ATTCAGCAAA GGATGAACTT TAGAG..... 275 GTTCTCTTCC TTAAAGCATC AATTGTGATA TCTGCCATTA TTGGTTCTTT GTGCTACAGT 699 .......... .......... .......... .......... .......... .......... 275 AATTGTAATT TATATTGATC TCCTCTTATT CAGGACTCTA GGAACATTGT GTACTGGTGG 759 ||||||| |||||||||| |||||||||| .......... .......... .......... ...GACTCTA GGAACATTGT GTACTGGTGG 302 ATTCAAGTTT TGTTGGAAGC ATTGTGTTTC TGGTGAATTC GACCTCCCAC CGGACTACTG 819 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| ATTCAAGTTT TGTTGGAAGC ATTGTGTTTC TGGTGAATTC GACCTCCCAC AGGACTACTG 362 CTCTCTCCCA ACGCTTCCGT TGTAGTTTTT GGAGCTTTTC AGCGCCAATA AAACGGTTGT 879 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCTCTCCCA ACGCTTCCGT TGTAGTTTTT GGAGCTTTTC AGCGCCAATA AAACGGTTGT 422 ATGTATCCAT TTTGTGTATC GAATGTAGCT GGATTATGAG TTTATATTAT ATCTATTGAG 939 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGTATCCAT TTTGTGTATC GAATGTAGCT GGATTATGAG TTTATATTAT ATCTATTGAG 482 AA 941 || AA 484 hqPGS_C06HBa0054K13.1-1+_SGN-E288638- (40 108,429 634,733 941) ******************************************************************************** EST sequence 31 -strand 494 n (File: SGN-E227495-) 1 GTATCATTTG AAAGCGATCC TGATGTTCTC ATTGCAAAAC TGGACGCAAC CGCAAATGAT 61 CTCCCGAAAG GTGACTTTGA TGTTCAGGGA TTCCCTACTA TGTACTTCAG ATCCGCCTCT 121 GGTAACTTGT CACAGTACAA TGGTGAGAGA ACAAAAGAGG CTATCATCGA ATTCATCGAG 181 AAGAATCGTG GCAAGCCTGC TCAGTCAGAC TCTGCCAAAG TCGATTCAGC AAAGGATGAA 241 CTTTAGAGGA CTCTAGGAAC ATTGTGTACT GGTGGATTCA AGTTTTGTTG GAAGCATTGT 301 GTTTCTGGTG AATTCGACCT CCCACCGGAC TACTGCTCTC TCCCAACGCT TCCGTTGTAG 361 TTTTTGGAGC TTTTCAGCGC CAATAAAACG GTTGTATGTA TCCATTTTGT GTATCGAATG 421 TAGCTGGATT ATGAGTTTAT ATTATATCTA TTGAGAAGTT CTCCAACTTT ATAGTAAAAA 481 AAAAAAAAAA AAAA Predicted gene structure (within gDNA segment 1 to 1740): Exon 1 67 108 ( 42 n); cDNA 1 42 ( 42 n); score: 1.000 Intron 1 109 428 ( 320 n); Pd: 1.000 (s: 1.00), Pa: 0.935 (s: 1.00) Exon 2 429 634 ( 206 n); cDNA 43 248 ( 206 n); score: 1.000 Intron 2 635 732 ( 98 n); Pd: 0.988 (s: 1.00), Pa: 0.846 (s: 1.00) Exon 3 733 958 ( 226 n); cDNA 249 474 ( 226 n); score: 1.000 Intron 3 959 1026 ( 68 n); Pd: 0.000 (s: 1.00), Pa: 0.786 (s: 0) Exon 4 1027 1046 ( 20 n); cDNA 475 494 ( 20 n); score: 0.650 MATCH C06HBa0054K13.1-1+ SGN-E227495- 1.000 494 1.000 C PGS_C06HBa0054K13.1-1+_SGN-E227495- (67 108,429 634,733 958,1027 1046) Alignment (genomic DNA sequence = upper lines): GTATCATTTG AAAGCGATCC TGATGTTCTC ATTGCAAAAC TGGTAAGAAC TTTTTTCATA 126 |||||||||| |||||||||| |||||||||| |||||||||| || GTATCATTTG AAAGCGATCC TGATGTTCTC ATTGCAAAAC TG........ .......... 42 AACTAAACAT GGATATTTGA TGCATGTATC TACTTCATCC TTTGTTACAT TAAGTAACGG 186 .......... .......... .......... .......... .......... .......... 42 CATAATAATC AAGAAAGAAT GTGTAGAATT AGAATCGGGT TTTTAGTATA AAAATCAGAA 246 .......... .......... .......... .......... .......... .......... 42 AGAACGGGGT GGACATTTTA TCTTTGATGT TATGGATTTC GTTGTTAGAG AGATTTTTAG 306 .......... .......... .......... .......... .......... .......... 42 TAGAAAACAT CTGTAAAGTG TATCAAAAAA GAAGGTTTGT ATGGCTTAAA CACGATTAGC 366 .......... .......... .......... .......... .......... .......... 42 AGTTGTAATG CACAGGACAT GTATTTGTTG TCATTTCCTC TCACCTGCTT CCTCATTTAC 426 .......... .......... .......... .......... .......... .......... 42 AGGACGCAAC CGCAAATGAT CTCCCGAAAG GTGACTTTGA TGTTCAGGGA TTCCCTACTA 486 |||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ..GACGCAAC CGCAAATGAT CTCCCGAAAG GTGACTTTGA TGTTCAGGGA TTCCCTACTA 100 TGTACTTCAG ATCCGCCTCT GGTAACTTGT CACAGTACAA TGGTGAGAGA ACAAAAGAGG 546 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTACTTCAG ATCCGCCTCT GGTAACTTGT CACAGTACAA TGGTGAGAGA ACAAAAGAGG 160 CTATCATCGA ATTCATCGAG AAGAATCGTG GCAAGCCTGC TCAGTCAGAC TCTGCCAAAG 606 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTATCATCGA ATTCATCGAG AAGAATCGTG GCAAGCCTGC TCAGTCAGAC TCTGCCAAAG 220 TCGATTCAGC AAAGGATGAA CTTTAGAGGT TTGGTTCTCT TCCTTAAAGC ATCAATTGTG 666 |||||||||| |||||||||| |||||||| TCGATTCAGC AAAGGATGAA CTTTAGAG.. .......... .......... .......... 248 ATATCTGCCA TTATTGGTTC TTTGTGCTAC AGTAATTGTA ATTTATATTG ATCTCCTCTT 726 .......... .......... .......... .......... .......... .......... 248 ATTCAGGACT CTAGGAACAT TGTGTACTGG TGGATTCAAG TTTTGTTGGA AGCATTGTGT 786 |||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ......GACT CTAGGAACAT TGTGTACTGG TGGATTCAAG TTTTGTTGGA AGCATTGTGT 302 TTCTGGTGAA TTCGACCTCC CACCGGACTA CTGCTCTCTC CCAACGCTTC CGTTGTAGTT 846 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCTGGTGAA TTCGACCTCC CACCGGACTA CTGCTCTCTC CCAACGCTTC CGTTGTAGTT 362 TTTGGAGCTT TTCAGCGCCA ATAAAACGGT TGTATGTATC CATTTTGTGT ATCGAATGTA 906 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTGGAGCTT TTCAGCGCCA ATAAAACGGT TGTATGTATC CATTTTGTGT ATCGAATGTA 422 GCTGGATTAT GAGTTTATAT TATATCTATT GAGAAGTTCT CCAACTTTAT AGTATCAGCA 966 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| || GCTGGATTAT GAGTTTATAT TATATCTATT GAGAAGTTCT CCAACTTTAT AG........ 474 GTTGAAGTTA TCTTCTTTGT CCCAGAATGC TACTGTTGGA ATGTATGCCT CCTGTTGCAG 1026 .......... .......... .......... .......... .......... .......... 474 TAAATAATGA TACACAATAA 1046 |||| || | | | || || TAAAAAAAAA AAAAAAAAAA 494 hqPGS_C06HBa0054K13.1-1+_SGN-E227495- (67 108,429 634,733 958) ******************************************************************************** EST sequence 26 -strand 593 n (File: SGN-E250179-) 1 ATTTGAAAGC GATCCTGATG TTCTCATTGC AAAACTGGAC GCAACCGCAA ATGATCTCCC 61 GAAAGGTGAC TTTGATGTTC AGGGATTCCC TACTATGTAC TTCAGATCCG CCTCTGGTAA 121 CTTGTCACAG TACAATGGTG AGAGAACAAA AGAGGCTATC ATCGAATTCA TCGAGAAGAA 181 TCGTGGCAAG CCTGCTCAGT CAGACTCTGC CAAAGTCGAT TCAGCAAAGG ATGAACTTTA 241 GAGGACTCTA GGAACATTGT GTACTGGTGG ATTCAAGTTT TGTTGGAAGC ATTGTGTTTC 301 TGGTGAATTC GACCTCCCAC CGGACTACTG CTCTCTCCCA ACGCTTCCGT TGTAGTTTTC 361 CNCCTTTTCA GCGCCAATAA AACGGTTGTA TGTATCCATT TTGTGTATCG AATGTAGCTG 421 GATTATGAGT TTATATTATA TCTATTGAGA AGTTCTCCAA CTTTATAGTA TCAGCAGTTG 481 AAGTTATCTT CTTTGTCCCA GAATGCTACT GTTGGAATGT ATGCCTCCTC CTGCAGTAAA 541 TAATGATACC CAATAATTAA AGAAGTTCAA AAAAAAAAAA AAAAAAAAAC TCG Predicted gene structure (within gDNA segment 1 to 1881): Exon 1 72 108 ( 37 n); cDNA 1 37 ( 37 n); score: 1.000 Intron 1 109 428 ( 320 n); Pd: 1.000 (s: 0), Pa: 0.935 (s: 1.00) Exon 2 429 634 ( 206 n); cDNA 38 243 ( 206 n); score: 1.000 Intron 2 635 732 ( 98 n); Pd: 0.988 (s: 1.00), Pa: 0.846 (s: 1.00) Exon 3 733 1060 ( 328 n); cDNA 244 570 ( 327 n); score: 0.976 PPA cDNA 571 590 MATCH C06HBa0054K13.1-1+ SGN-E250179- 0.985 571 0.963 C PGS_C06HBa0054K13.1-1+_SGN-E250179- (72 108,429 634,733 1060) Alignment (genomic DNA sequence = upper lines): ATTTGAAAGC GATCCTGATG TTCTCATTGC AAAACTGGTA AGAACTTTTT TCATAAACTA 131 |||||||||| |||||||||| |||||||||| ||||||| ATTTGAAAGC GATCCTGATG TTCTCATTGC AAAACTG... .......... .......... 37 AACATGGATA TTTGATGCAT GTATCTACTT CATCCTTTGT TACATTAAGT AACGGCATAA 191 .......... .......... .......... .......... .......... .......... 37 TAATCAAGAA AGAATGTGTA GAATTAGAAT CGGGTTTTTA GTATAAAAAT CAGAAAGAAC 251 .......... .......... .......... .......... .......... .......... 37 GGGGTGGACA TTTTATCTTT GATGTTATGG ATTTCGTTGT TAGAGAGATT TTTAGTAGAA 311 .......... .......... .......... .......... .......... .......... 37 AACATCTGTA AAGTGTATCA AAAAAGAAGG TTTGTATGGC TTAAACACGA TTAGCAGTTG 371 .......... .......... .......... .......... .......... .......... 37 TAATGCACAG GACATGTATT TGTTGTCATT TCCTCTCACC TGCTTCCTCA TTTACAGGAC 431 ||| .......... .......... .......... .......... .......... .......GAC 40 GCAACCGCAA ATGATCTCCC GAAAGGTGAC TTTGATGTTC AGGGATTCCC TACTATGTAC 491 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCAACCGCAA ATGATCTCCC GAAAGGTGAC TTTGATGTTC AGGGATTCCC TACTATGTAC 100 TTCAGATCCG CCTCTGGTAA CTTGTCACAG TACAATGGTG AGAGAACAAA AGAGGCTATC 551 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCAGATCCG CCTCTGGTAA CTTGTCACAG TACAATGGTG AGAGAACAAA AGAGGCTATC 160 ATCGAATTCA TCGAGAAGAA TCGTGGCAAG CCTGCTCAGT CAGACTCTGC CAAAGTCGAT 611 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCGAATTCA TCGAGAAGAA TCGTGGCAAG CCTGCTCAGT CAGACTCTGC CAAAGTCGAT 220 TCAGCAAAGG ATGAACTTTA GAGGTTTGGT TCTCTTCCTT AAAGCATCAA TTGTGATATC 671 |||||||||| |||||||||| ||| TCAGCAAAGG ATGAACTTTA GAG....... .......... .......... .......... 243 TGCCATTATT GGTTCTTTGT GCTACAGTAA TTGTAATTTA TATTGATCTC CTCTTATTCA 731 .......... .......... .......... .......... .......... .......... 243 GGACTCTAGG AACATTGTGT ACTGGTGGAT TCAAGTTTTG TTGGAAGCAT TGTGTTTCTG 791 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .GACTCTAGG AACATTGTGT ACTGGTGGAT TCAAGTTTTG TTGGAAGCAT TGTGTTTCTG 302 GTGAATTCGA CCTCCCACCG GACTACTGCT CTCTCCCAAC GCTTCCGTTG TAGTTTTTGG 851 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||| |||| GTGAATTCGA CCTCCCACCG GACTACTGCT CTCTCCCAAC GCTTCCGTTG TAG-TTTTCC 361 AGCTTTTCAG CGCCAATAAA ACGGTTGTAT GTATCCATTT TGTGTATCGA ATGTAGCTGG 911 |||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| NCCTTTTCAG CGCCAATAAA ACGGTTGTAT GTATCCATTT TGTGTATCGA ATGTAGCTGG 421 ATTATGAGTT TATATTATAT CTATTGAGAA GTTCTCCAAC TTTATAGTAT CAGCAGTTGA 971 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTATGAGTT TATATTATAT CTATTGAGAA GTTCTCCAAC TTTATAGTAT CAGCAGTTGA 481 AGTTATCTTC TTTGTCCCAG AATGCTACTG TTGGAATGTA TGCCTCCTGT TGCAGTAAAT 1031 |||||||||| |||||||||| |||||||||| |||||||||| |||||||| |||||||||| AGTTATCTTC TTTGTCCCAG AATGCTACTG TTGGAATGTA TGCCTCCTCC TGCAGTAAAT 541 AATGATACAC AATAATTAAA GAAGTTCAA 1060 |||||||| | |||||||||| ||||||||| AATGATACCC AATAATTAAA GAAGTTCAA 570 hqPGS_C06HBa0054K13.1-1+_SGN-E250179- (72 108,429 634,733 1060) ******************************************************************************** EST sequence 37 -strand 470 n (File: SGN-E221794-) 1 TGTTCTCATT GCAAAACTGG ACGCAACCGC AAATGATCTC CCGAAAGGTG ACTTTGATGT 61 TCAGGGATTC CCTACTATGT ACTTCAGATC CGCCCTCTGG TAACTTGTCA CAGTACAATG 121 GTGAGAGAAC AAAAGAGGCT ATCATCGAAT TCATCGAGAA GAATCGTGGC AAGCCTGCTC 181 AGTCAGACTC TGCCAAAGTC GATTCAGCAA AGGATGAACT TTAGAGGACT CTAGGAACAT 241 TGTGTACTGG TGGATTCAAG TTTTGTTGGA AGCATTGTGT TTCTGGTGAA TTCGACCTCC 301 CACCGGACTA CTGCTCTCTC CCAACGCTTC CGTTGTAGTT TTTGGAGCTT TTCAGCGCCA 361 ATAAAACGGT TGTATGTATC CATTTTGTGT ATCGAATGTA GCTGGATTAT GAGTTTATAT 421 TATATCTATT GAGAAGTTCT CCAACTTTAT AGTAAAAAAA AAAAAAAAAA Predicted gene structure (within gDNA segment 1 to 1720): Exon 1 90 108 ( 19 n); cDNA 1 19 ( 19 n); score: 1.000 Intron 1 109 428 ( 320 n); Pd: 1.000 (s: 0), Pa: 0.935 (s: 1.00) Exon 2 429 634 ( 206 n); cDNA 20 226 ( 207 n); score: 0.988 Intron 2 635 732 ( 98 n); Pd: 0.988 (s: 1.00), Pa: 0.846 (s: 1.00) Exon 3 733 972 ( 240 n); cDNA 227 466 ( 240 n); score: 0.967 MATCH C06HBa0054K13.1-1+ SGN-E221794- 0.976 465 0.989 C PGS_C06HBa0054K13.1-1+_SGN-E221794- (90 108,429 634,733 972) Alignment (genomic DNA sequence = upper lines): TGTTCTCATT GCAAAACTGG TAAGAACTTT TTTCATAAAC TAAACATGGA TATTTGATGC 149 |||||||||| ||||||||| TGTTCTCATT GCAAAACTG. .......... .......... .......... .......... 19 ATGTATCTAC TTCATCCTTT GTTACATTAA GTAACGGCAT AATAATCAAG AAAGAATGTG 209 .......... .......... .......... .......... .......... .......... 19 TAGAATTAGA ATCGGGTTTT TAGTATAAAA ATCAGAAAGA ACGGGGTGGA CATTTTATCT 269 .......... .......... .......... .......... .......... .......... 19 TTGATGTTAT GGATTTCGTT GTTAGAGAGA TTTTTAGTAG AAAACATCTG TAAAGTGTAT 329 .......... .......... .......... .......... .......... .......... 19 CAAAAAAGAA GGTTTGTATG GCTTAAACAC GATTAGCAGT TGTAATGCAC AGGACATGTA 389 .......... .......... .......... .......... .......... .......... 19 TTTGTTGTCA TTTCCTCTCA CCTGCTTCCT CATTTACAGG ACGCAACCGC AAATGATCTC 449 | |||||||||| |||||||||| .......... .......... .......... .........G ACGCAACCGC AAATGATCTC 40 CCGAAAGGTG ACTTTGATGT TCAGGGATTC CCTACTATGT ACTTCAGATC CG-CCTCTGG 508 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| || ||||||| CCGAAAGGTG ACTTTGATGT TCAGGGATTC CCTACTATGT ACTTCAGATC CGCCCTCTGG 100 TAACTTGTCA CAGTACAATG GTGAGAGAAC AAAAGAGGCT ATCATCGAAT TCATCGAGAA 568 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAACTTGTCA CAGTACAATG GTGAGAGAAC AAAAGAGGCT ATCATCGAAT TCATCGAGAA 160 GAATCGTGGC AAGCCTGCTC AGTCAGACTC TGCCAAAGTC GATTCAGCAA AGGATGAACT 628 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAATCGTGGC AAGCCTGCTC AGTCAGACTC TGCCAAAGTC GATTCAGCAA AGGATGAACT 220 TTAGAGGTTT GGTTCTCTTC CTTAAAGCAT CAATTGTGAT ATCTGCCATT ATTGGTTCTT 688 |||||| TTAGAG.... .......... .......... .......... .......... .......... 226 TGTGCTACAG TAATTGTAAT TTATATTGAT CTCCTCTTAT TCAGGACTCT AGGAACATTG 748 |||||| |||||||||| .......... .......... .......... .......... ....GACTCT AGGAACATTG 242 TGTACTGGTG GATTCAAGTT TTGTTGGAAG CATTGTGTTT CTGGTGAATT CGACCTCCCA 808 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTACTGGTG GATTCAAGTT TTGTTGGAAG CATTGTGTTT CTGGTGAATT CGACCTCCCA 302 CCGGACTACT GCTCTCTCCC AACGCTTCCG TTGTAGTTTT TGGAGCTTTT CAGCGCCAAT 868 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCGGACTACT GCTCTCTCCC AACGCTTCCG TTGTAGTTTT TGGAGCTTTT CAGCGCCAAT 362 AAAACGGTTG TATGTATCCA TTTTGTGTAT CGAATGTAGC TGGATTATGA GTTTATATTA 928 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAACGGTTG TATGTATCCA TTTTGTGTAT CGAATGTAGC TGGATTATGA GTTTATATTA 422 TATCTATTGA GAAGTTCTCC AACTTTATAG TATCAGCAGT TGAA 972 |||||||||| |||||||||| |||||||||| || | | || TATCTATTGA GAAGTTCTCC AACTTTATAG TAAAAAAAAA AAAA 466 hqPGS_C06HBa0054K13.1-1+_SGN-E221794- (429 634,733 972) ******************************************************************************** EST sequence 36 -strand 437 n (File: SGN-E221708-) 1 ATGATCTCCC GAAAGGTGAC TTTGATGTTC AGGGATTCCC TACTATGTAC TTCAGATCCG 61 CCTCTGGTAA CTTGTCACAG TACAATGGTG AGAGAACAAA AGAGGCTATC ATCGAATTCA 121 TCGAGAAGAA TCGTGGCAAG CCTGCTCAGT CAGACTCTGC CAAAGTCGAT TCAGCAAAGG 181 ATGAACTTTA GAGGACTCTA GGAACATTGT GTACTGGTGG ATTCAAGTTT TGTTGGAAGC 241 ATTGTGTTTC TGGTGAATTC GACCTCCCAC CGGACTACTG CTCTCTCCCA ACGCTTCCGT 301 TGTAGTTTTT GGAGCTTTTC AGCGCCAATA AAACGGTTGT ATGTATCCAT TTTGTGTATC 361 GAATGTAGCT GGATTATGAG TTTATATTAT ATCTATTGAG AAGTTCTCCA ACTTTATAGT 421 AAAAAAAAAA AAAAAAA Predicted gene structure (within gDNA segment 1 to 1720): Exon 1 442 634 ( 193 n); cDNA 1 193 ( 193 n); score: 1.000 Intron 1 635 732 ( 98 n); Pd: 0.988 (s: 1.00), Pa: 0.846 (s: 1.00) Exon 2 733 972 ( 240 n); cDNA 194 433 ( 240 n); score: 0.967 MATCH C06HBa0054K13.1-1+ SGN-E221708- 0.982 433 0.991 C PGS_C06HBa0054K13.1-1+_SGN-E221708- (442 634,733 972) Alignment (genomic DNA sequence = upper lines): ATGATCTCCC GAAAGGTGAC TTTGATGTTC AGGGATTCCC TACTATGTAC TTCAGATCCG 501 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGATCTCCC GAAAGGTGAC TTTGATGTTC AGGGATTCCC TACTATGTAC TTCAGATCCG 60 CCTCTGGTAA CTTGTCACAG TACAATGGTG AGAGAACAAA AGAGGCTATC ATCGAATTCA 561 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCTCTGGTAA CTTGTCACAG TACAATGGTG AGAGAACAAA AGAGGCTATC ATCGAATTCA 120 TCGAGAAGAA TCGTGGCAAG CCTGCTCAGT CAGACTCTGC CAAAGTCGAT TCAGCAAAGG 621 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCGAGAAGAA TCGTGGCAAG CCTGCTCAGT CAGACTCTGC CAAAGTCGAT TCAGCAAAGG 180 ATGAACTTTA GAGGTTTGGT TCTCTTCCTT AAAGCATCAA TTGTGATATC TGCCATTATT 681 |||||||||| ||| ATGAACTTTA GAG....... .......... .......... .......... .......... 193 GGTTCTTTGT GCTACAGTAA TTGTAATTTA TATTGATCTC CTCTTATTCA GGACTCTAGG 741 ||||||||| .......... .......... .......... .......... .......... .GACTCTAGG 202 AACATTGTGT ACTGGTGGAT TCAAGTTTTG TTGGAAGCAT TGTGTTTCTG GTGAATTCGA 801 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACATTGTGT ACTGGTGGAT TCAAGTTTTG TTGGAAGCAT TGTGTTTCTG GTGAATTCGA 262 CCTCCCACCG GACTACTGCT CTCTCCCAAC GCTTCCGTTG TAGTTTTTGG AGCTTTTCAG 861 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCTCCCACCG GACTACTGCT CTCTCCCAAC GCTTCCGTTG TAGTTTTTGG AGCTTTTCAG 322 CGCCAATAAA ACGGTTGTAT GTATCCATTT TGTGTATCGA ATGTAGCTGG ATTATGAGTT 921 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGCCAATAAA ACGGTTGTAT GTATCCATTT TGTGTATCGA ATGTAGCTGG ATTATGAGTT 382 TATATTATAT CTATTGAGAA GTTCTCCAAC TTTATAGTAT CAGCAGTTGA A 972 |||||||||| |||||||||| |||||||||| ||||||||| | | | | TATATTATAT CTATTGAGAA GTTCTCCAAC TTTATAGTAA AAAAAAAAAA A 433 hqPGS_C06HBa0054K13.1-1+_SGN-E221708- (442 634,733 972) ******************************************************************************** EST sequence 8 +strand 816 n (File: SGN-E539993+) 1 TTTGGAATTG CAGTACTTCG GACTGAAGCC GGAACAGGCA CCTGTGATCA TCATAATGGA 61 CGCTGATGAA CAAAAGTATA TTAAGGACCA TGTGGAACCT GATGCCATTG CTGCTTACTT 121 GAAGGATTAC AAGGTGATGC ATCCTCTTCT TTTTCTTGGA TATATTTTGG AATGAAAGCG 181 TTGTTAATTG TGAACAATAT TCTGCACGGA AGGAAAGGCT TACTAACCTT TTTCCTCTAA 241 TTTTCCACAT TGTTACAGGA AGGAAAACTG AAGCCACATG TGAAGTCAGA GCCCATCCCT 301 GAAGTCAATG ACGAACCTGT TAAGGTGGTT GTTAGGGATA CCCTCCAGGA TATGGTTTAC 361 AAATCGGGAA AAAATGGTGC GTGTCTGTCA ATATTTTAAT CTTTATTCGA TGTCTTGGTT 421 AAGAAAGAGT TGTTTCTTTG TTGTACCATT TCGTTCTCCC TCTTTGGTGT TTACTTGCAT 481 TTCTTTACTA GTGTGTAAGG TCGTGATGAG GAGTTGGATG TCGTAAATTA ACTGATTGTG 541 GAACTATTAT ATGTAGTAGG AGAAAGAGGG AGCAGTCATC AGCTAATTGC CCGCGGGTTT 601 GACTTTAACA ATAGTTGTGC TCTCCTAAAT TATTATTCTT TTTGTCTGCT CAGTGCTGTT 661 AGAGTTCTAT GCACCTTGGT GTGGCCACTG CAAGAGTCTG GCTCCAATTT TGGATGAAGT 721 GGCTGTATCA TTTGAAAGCG ATCCTGATGT TCTCATTGCA AAACTGGTAA GAACTTTTTT 781 CATAAACTAA ACATGGATAT TTGATGCATG TATCTA Predicted gene structure (within gDNA segment 1 to 768): Exon 1 1 158 ( 158 n); cDNA 659 816 ( 158 n); score: 1.000 MATCH C06HBa0054K13.1-1+ SGN-E539993+ 1.000 158 0.206 G PGS_C06HBa0054K13.1-1+_SGN-E539993+ (1 158) Alignment (genomic DNA sequence = upper lines): TTAGAGTTCT ATGCACCTTG GTGTGGCCAC TGCAAGAGTC TGGCTCCAAT TTTGGATGAA 60 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTAGAGTTCT ATGCACCTTG GTGTGGCCAC TGCAAGAGTC TGGCTCCAAT TTTGGATGAA 718 GTGGCTGTAT CATTTGAAAG CGATCCTGAT GTTCTCATTG CAAAACTGGT AAGAACTTTT 120 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGGCTGTAT CATTTGAAAG CGATCCTGAT GTTCTCATTG CAAAACTGGT AAGAACTTTT 778 TTCATAAACT AAACATGGAT ATTTGATGCA TGTATCTA 158 |||||||||| |||||||||| |||||||||| |||||||| TTCATAAACT AAACATGGAT ATTTGATGCA TGTATCTA 816 hqPGS_C06HBa0054K13.1-1+_SGN-E539993+ (1 158) ******************************************************************************** EST sequence 17 +strand 454 n (File: SGN-E267069+) 1 GCTTTTAAGT CCAAGTACAA CGATGTTGCT GTGATTTACA AAGGGGATGG GGTGAGCTTT 61 CTCTTGGGTG ATGTTGAGGC TGGTCAAGGT GCTTTTGAGT ACTTCGGACT GAAGCCGGAA 121 CAGGCACCTG TGATCATCAT AATGGACGCT GATGAACAAA AGTATATTAA GGACCATGTG 181 GAACCTGATG CCATTGCTGC TTACTTGAAG GATTACAAGG AAGGAAAACT GAAGCCACAT 241 GTGAAGTCAG AGCCCATCCC TGAAGTCAAT GACGAACCTG TTAAGGTGGT TGTTAGGGAT 301 ACCCTCCAGG ATATGGTTTA CAAATCGGGA AAAAATGTGC TGTTAGAGTT CTATGCACCT 361 TGGTGTGGCC ACTGCAAGAG TCTGGCTCCA ATTTTGGATG AAGTGGCTGT ATCATTTGAA 421 AGCGATCCTG ATGTTCTTAT TGCAAAACTG GACG Predicted gene structure (within gDNA segment 1 to 875): Exon 1 1 108 ( 108 n); cDNA 343 450 ( 108 n); score: 0.991 MATCH C06HBa0054K13.1-1+ SGN-E267069+ 0.991 108 0.238 C PGS_C06HBa0054K13.1-1+_SGN-E267069+ (1 108) Alignment (genomic DNA sequence = upper lines): TTAGAGTTCT ATGCACCTTG GTGTGGCCAC TGCAAGAGTC TGGCTCCAAT TTTGGATGAA 60 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTAGAGTTCT ATGCACCTTG GTGTGGCCAC TGCAAGAGTC TGGCTCCAAT TTTGGATGAA 402 GTGGCTGTAT CATTTGAAAG CGATCCTGAT GTTCTCATTG CAAAACTG 108 |||||||||| |||||||||| |||||||||| ||||| |||| |||||||| GTGGCTGTAT CATTTGAAAG CGATCCTGAT GTTCTTATTG CAAAACTG 450 hqPGS_C06HBa0054K13.1-1+_SGN-E267069+ (1 108) ******************************************************************************** EST sequence 11 +strand 354 n (File: SGN-E264284+) 1 GGGTGAGTTG AGGCTGGTCA AGGTGCTTTT GAGTACTTCG GACTGAAGCC GGAACAGGCA 61 CCTGTGATCA TCATAATGGA CGCTGATGAA CAAAAGTATA TTAAGGACCA TGTGGAACCT 121 GATGCCATTG CTGCTTACTT GAAGGATTAC AAGGAAGGAA AACTGAAGCC ACATGTGAAG 181 TCAGAGCCCA TCCCTGAAGT CAATGACGAA CCTGTTAAGG TGGTTGTTAG GGATACCCTC 241 CAGGATATGG TTTACAAATC GGGAAAAAAT GTGCTGTTAG AGTTCTATGC ACCTTGGTGT 301 GGCCACTGCA AGAGTCTGGC TCCAATTTTG GATGAAGTGG CTGTATCATT TGAA Predicted gene structure (within gDNA segment 1 to 688): Exon 1 1 78 ( 78 n); cDNA 277 354 ( 78 n); score: 1.000 MATCH C06HBa0054K13.1-1+ SGN-E264284+ 1.000 78 0.220 C PGS_C06HBa0054K13.1-1+_SGN-E264284+ (1 78) Alignment (genomic DNA sequence = upper lines): TTAGAGTTCT ATGCACCTTG GTGTGGCCAC TGCAAGAGTC TGGCTCCAAT TTTGGATGAA 60 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTAGAGTTCT ATGCACCTTG GTGTGGCCAC TGCAAGAGTC TGGCTCCAAT TTTGGATGAA 336 GTGGCTGTAT CATTTGAA 78 |||||||||| |||||||| GTGGCTGTAT CATTTGAA 354 hqPGS_C06HBa0054K13.1-1+_SGN-E264284+ (1 78) ******************************************************************************** EST sequence 2 +strand 774 n (File: SGN-E262877+) 1 TTTGTTGTTG GTATATTTCC AGACCCCTCC GGAGAGAAAT TCGAGAACTA TTTAACGCTA 61 GCTGAAAAAC TGCGAGGCGA GTTCGATTTT GCTCACACTG TTGATGCTAA ACACCTCCCT 121 CGGGGTGGAC CAGTCAACAA GCCCACTCTT CGTCTTCTAA AGCCATTTGA TGAACTCTTT 181 GTTGATTTTG AGGACTTTGA TGTCGATGCA ATGGAGAAGT TCATCTCAGA ATCTAGTATT 241 CCTGTTGTTA CTATTTTTGA CAATGACCCA AACAACCATC CTTATGTTAA CAAGTTCTTC 301 GAAGGCACCA ACGCCAAGGC ATTGCTATTT GTGAACTTTA GCTCTGAATT TGATGCTTTT 361 AAGTCCAAGT ACAACGATGT TGCTGTGATT TACAAAGGGG ATGGGGTGAG CTTTCTCTTG 421 GGTGATGTTG AGGCTGGTCA AGGTGCTTTT GAGTACTTCG GACTGAAGCC GGAACAGGCA 481 CCTGTGATCA TCATAATGGA CGCTGATGAA CAAAAGTATA TTAAGGACCA TGTGGAACCT 541 GATGCCATTG CTGCTTACTT GAAGGATTAC AAGGAAGGAA AACTGAAGCC ACATGTGAAG 601 TCAGAGCCCA TCCCTGAAGT CAATGACGAA CCTGTTAAAG GTGGTTGTTA GGGATACCCT 661 CCAGGATATG GTTTACAAAT CGGGAAAAAA TGTGCTGTTA GAGTTCTATG CACCTTGGTG 721 TGGCCACTGC AAGAGTCTGG CTCCNNATTT TGGATGAAGT GGCTGTATCA TTTG Predicted gene structure (within gDNA segment 1 to 686): Exon 1 1 76 ( 76 n); cDNA 698 774 ( 77 n); score: 0.954 MATCH C06HBa0054K13.1-1+ SGN-E262877+ 0.954 76 0.111 G PGS_C06HBa0054K13.1-1+_SGN-E262877+ (1 76) Alignment (genomic DNA sequence = upper lines): TTAGAGTTCT ATGCACCTTG GTGTGGCCAC TGCAAGAGTC TGGCTCC-AA TTTTGGATGA 59 |||||||||| |||||||||| |||||||||| |||||||||| ||||||| | |||||||||| TTAGAGTTCT ATGCACCTTG GTGTGGCCAC TGCAAGAGTC TGGCTCCNNA TTTTGGATGA 757 AGTGGCTGTA TCATTTG 76 |||||||||| ||||||| AGTGGCTGTA TCATTTG 774 hqPGS_C06HBa0054K13.1-1+_SGN-E262877+ (1 76) ******************************************************************************** EST sequence 10 +strand 260 n (File: SGN-E253878+) 1 TCATCATAAT GGACGCTCAT GAACAAAAGT ATATTAAGGA CCATGTGGAA CCTGATGCCA 61 TTGCTGCTTA CTTGAAGGAT TACAAGGAAG GAAAACTGAA GCCACATGTG AAGTCAGAGC 121 CCATCCCTGA AGTCAATGAC GAACCTGTTA AGGTGGTTGT TAGGGATACC CTCCAAGATA 181 TGGTTTACAA ATCGGGAAAA AATGTGCTGT TAGAGTTCTA TGCACCTTGG TGTGGCCACT 241 GCAAGAGTCT GGCTCCAATT Predicted gene structure (within gDNA segment 1 to 661): Exon 1 1 51 ( 51 n); cDNA 210 260 ( 51 n); score: 1.000 MATCH C06HBa0054K13.1-1+ SGN-E253878+ 1.000 51 0.196 C PGS_C06HBa0054K13.1-1+_SGN-E253878+ (1 51) Alignment (genomic DNA sequence = upper lines): TTAGAGTTCT ATGCACCTTG GTGTGGCCAC TGCAAGAGTC TGGCTCCAAT T 51 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| | TTAGAGTTCT ATGCACCTTG GTGTGGCCAC TGCAAGAGTC TGGCTCCAAT T 260 hqPGS_C06HBa0054K13.1-1+_SGN-E253878+ (1 51) ******************************************************************************** EST sequence 29 -strand 339 n (File: SGN-E229203-) 1 AAAGAGGCTA TCATCGAATT CATCGAGAAG AATCGTGGCA AGCCTGCTCA GTCAGACTCT 61 GCCAAAGTCG ATTCAGCAAA GGATGAACTT TAGAGGACTC TAGGAACATT GTGTACTGGT 121 GGATTCAAGT TTTGTTGGAA GCATTGTGTT TCTGGTGAAT TCGACCTCCC ACCGGACTAC 181 TGCTCTCTCC CAACGCTTCC GTTGTAGTTT TTGGAGCTTT TCAGCGCCAA TAAAACGGTT 241 GTATGTATCC ATTTTGTGTA TCGAATGTAG CTGGATTATG AGTTTATATT ATATCTATTG 301 AGAAGTTCTC CAACTAAATA GTAAAAAAAA AAAAAAAAA Predicted gene structure (within gDNA segment 1 to 1792): Exon 1 540 634 ( 95 n); cDNA 1 95 ( 95 n); score: 1.000 Intron 1 635 732 ( 98 n); Pd: 0.988 (s: 1.00), Pa: 0.846 (s: 1.00) Exon 2 733 972 ( 240 n); cDNA 96 335 ( 240 n); score: 0.958 MATCH C06HBa0054K13.1-1+ SGN-E229203- 0.970 335 0.988 C PGS_C06HBa0054K13.1-1+_SGN-E229203- (540 634,733 972) Alignment (genomic DNA sequence = upper lines): AAAGAGGCTA TCATCGAATT CATCGAGAAG AATCGTGGCA AGCCTGCTCA GTCAGACTCT 599 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAGAGGCTA TCATCGAATT CATCGAGAAG AATCGTGGCA AGCCTGCTCA GTCAGACTCT 60 GCCAAAGTCG ATTCAGCAAA GGATGAACTT TAGAGGTTTG GTTCTCTTCC TTAAAGCATC 659 |||||||||| |||||||||| |||||||||| ||||| GCCAAAGTCG ATTCAGCAAA GGATGAACTT TAGAG..... .......... .......... 95 AATTGTGATA TCTGCCATTA TTGGTTCTTT GTGCTACAGT AATTGTAATT TATATTGATC 719 .......... .......... .......... .......... .......... .......... 95 TCCTCTTATT CAGGACTCTA GGAACATTGT GTACTGGTGG ATTCAAGTTT TGTTGGAAGC 779 ||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ...GACTCTA GGAACATTGT GTACTGGTGG ATTCAAGTTT TGTTGGAAGC 142 ATTGTGTTTC TGGTGAATTC GACCTCCCAC CGGACTACTG CTCTCTCCCA ACGCTTCCGT 839 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTGTGTTTC TGGTGAATTC GACCTCCCAC CGGACTACTG CTCTCTCCCA ACGCTTCCGT 202 TGTAGTTTTT GGAGCTTTTC AGCGCCAATA AAACGGTTGT ATGTATCCAT TTTGTGTATC 899 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTAGTTTTT GGAGCTTTTC AGCGCCAATA AAACGGTTGT ATGTATCCAT TTTGTGTATC 262 GAATGTAGCT GGATTATGAG TTTATATTAT ATCTATTGAG AAGTTCTCCA ACTTTATAGT 959 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||| ||||| GAATGTAGCT GGATTATGAG TTTATATTAT ATCTATTGAG AAGTTCTCCA ACTAAATAGT 322 ATCAGCAGTT GAA 972 | | | || AAAAAAAAAA AAA 335 hqPGS_C06HBa0054K13.1-1+_SGN-E229203- (540 634,733 972) ******************************************************************************** EST sequence 28 -strand 321 n (File: SGN-E228723-) 1 TTCATCGAGA AGAATCGTGG CAAGCCTGCT CAGTCAGACT CTGCCAAAGT CGATTCAGCA 61 AAGGATGAAC TTTAGAGGAC TCTAGGAACA TTGTGTACTG GTGGATTCAA GTTTTGTTGG 121 AAGCATTGTG TTTCTGGTGA ATTCGACCTC CCACCGGACT ACTGCTCTCT CCCAACGCTT 181 CCGTTGTAGT TTTTGGAGCT TTTCAGCGCC AATAAAACGG TTGTATGTAT CCATTTTGTG 241 TATCGAATGT AGCTGGATTA TGAGTTTATA TTATATCTAT TGAGAAGTTC TCCAACTTTA 301 TCCCAAAAAA AAAAAAAAAA A Predicted gene structure (within gDNA segment 1 to 1756): Exon 1 558 634 ( 77 n); cDNA 1 77 ( 77 n); score: 1.000 Intron 1 635 732 ( 98 n); Pd: 0.988 (s: 1.00), Pa: 0.846 (s: 1.00) Exon 2 733 956 ( 224 n); cDNA 78 301 ( 224 n); score: 1.000 PPA cDNA 305 321 MATCH C06HBa0054K13.1-1+ SGN-E228723- 1.000 301 0.938 C PGS_C06HBa0054K13.1-1+_SGN-E228723- (558 634,733 956) Alignment (genomic DNA sequence = upper lines): TTCATCGAGA AGAATCGTGG CAAGCCTGCT CAGTCAGACT CTGCCAAAGT CGATTCAGCA 617 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCATCGAGA AGAATCGTGG CAAGCCTGCT CAGTCAGACT CTGCCAAAGT CGATTCAGCA 60 AAGGATGAAC TTTAGAGGTT TGGTTCTCTT CCTTAAAGCA TCAATTGTGA TATCTGCCAT 677 |||||||||| ||||||| AAGGATGAAC TTTAGAG... .......... .......... .......... .......... 77 TATTGGTTCT TTGTGCTACA GTAATTGTAA TTTATATTGA TCTCCTCTTA TTCAGGACTC 737 ||||| .......... .......... .......... .......... .......... .....GACTC 82 TAGGAACATT GTGTACTGGT GGATTCAAGT TTTGTTGGAA GCATTGTGTT TCTGGTGAAT 797 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAGGAACATT GTGTACTGGT GGATTCAAGT TTTGTTGGAA GCATTGTGTT TCTGGTGAAT 142 TCGACCTCCC ACCGGACTAC TGCTCTCTCC CAACGCTTCC GTTGTAGTTT TTGGAGCTTT 857 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCGACCTCCC ACCGGACTAC TGCTCTCTCC CAACGCTTCC GTTGTAGTTT TTGGAGCTTT 202 TCAGCGCCAA TAAAACGGTT GTATGTATCC ATTTTGTGTA TCGAATGTAG CTGGATTATG 917 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCAGCGCCAA TAAAACGGTT GTATGTATCC ATTTTGTGTA TCGAATGTAG CTGGATTATG 262 AGTTTATATT ATATCTATTG AGAAGTTCTC CAACTTTAT 956 |||||||||| |||||||||| |||||||||| ||||||||| AGTTTATATT ATATCTATTG AGAAGTTCTC CAACTTTAT 301 hqPGS_C06HBa0054K13.1-1+_SGN-E228723- (558 634,733 956) ******************************************************************************** EST sequence 24 +strand 358 n (File: SGN-E357363+) 1 TCGATTCAGC AAAGGATGAA CTTTAGAGGA CTCTAGGAAC ATTGTGTACT GGTGGATTCA 61 AGTTTTGTTG GAAGCATTGT GTTTCTGGTG AATTCGACCT CCCACCGGAC TACTGCTCTC 121 TCCCAACGCT TCCGTTGTAG TTTTTGGAGC TTTTCAGCGC CAATAAAACG GTTGTATGTA 181 TCCATTTTGT GTATCGAATG TAGCTGGATT ATGAGTTTAT ATTATATCTA TTGAGAAGTT 241 CTCCAACTTT ATAGTATCAG CAGTTGAAGT TATCTTCTTT GTCCCAGAAT GCTACTGTTG 301 GAATGTATGC CTCCTGTTGC AGTAAATAAT GATACACAAT AATTAAAGAA AAAAAAAA Predicted gene structure (within gDNA segment 1 to 1744): Exon 1 607 634 ( 28 n); cDNA 1 28 ( 28 n); score: 1.000 Intron 1 635 732 ( 98 n); Pd: 0.988 (s: 0), Pa: 0.846 (s: 1.00) Exon 2 733 1061 ( 329 n); cDNA 29 357 ( 329 n); score: 0.988 MATCH C06HBa0054K13.1-1+ SGN-E357363+ 0.988 357 0.997 C PGS_C06HBa0054K13.1-1+_SGN-E357363+ (607 634,733 1061) Alignment (genomic DNA sequence = upper lines): TCGATTCAGC AAAGGATGAA CTTTAGAGGT TTGGTTCTCT TCCTTAAAGC ATCAATTGTG 666 |||||||||| |||||||||| |||||||| TCGATTCAGC AAAGGATGAA CTTTAGAG.. .......... .......... .......... 28 ATATCTGCCA TTATTGGTTC TTTGTGCTAC AGTAATTGTA ATTTATATTG ATCTCCTCTT 726 .......... .......... .......... .......... .......... .......... 28 ATTCAGGACT CTAGGAACAT TGTGTACTGG TGGATTCAAG TTTTGTTGGA AGCATTGTGT 786 |||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ......GACT CTAGGAACAT TGTGTACTGG TGGATTCAAG TTTTGTTGGA AGCATTGTGT 82 TTCTGGTGAA TTCGACCTCC CACCGGACTA CTGCTCTCTC CCAACGCTTC CGTTGTAGTT 846 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCTGGTGAA TTCGACCTCC CACCGGACTA CTGCTCTCTC CCAACGCTTC CGTTGTAGTT 142 TTTGGAGCTT TTCAGCGCCA ATAAAACGGT TGTATGTATC CATTTTGTGT ATCGAATGTA 906 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTGGAGCTT TTCAGCGCCA ATAAAACGGT TGTATGTATC CATTTTGTGT ATCGAATGTA 202 GCTGGATTAT GAGTTTATAT TATATCTATT GAGAAGTTCT CCAACTTTAT AGTATCAGCA 966 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTGGATTAT GAGTTTATAT TATATCTATT GAGAAGTTCT CCAACTTTAT AGTATCAGCA 262 GTTGAAGTTA TCTTCTTTGT CCCAGAATGC TACTGTTGGA ATGTATGCCT CCTGTTGCAG 1026 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTGAAGTTA TCTTCTTTGT CCCAGAATGC TACTGTTGGA ATGTATGCCT CCTGTTGCAG 322 TAAATAATGA TACACAATAA TTAAAGAAGT TCAAA 1061 |||||||||| |||||||||| |||||||| ||| TAAATAATGA TACACAATAA TTAAAGAAAA AAAAA 357 hqPGS_C06HBa0054K13.1-1+_SGN-E357363+ (607 634,733 1061) ******************************************************************************** EST sequence 27 -strand 784 n (File: SGN-E539990-) 1 CATAATAATC AAGAAAGAAT GTGTAGAATT AGAATCGGGT TTTTAGTATA AAAATCAGAA 61 AGAACGGGGT GGACATTTTA TCTTTGATGT TATGGATTTC GTTGTTAGAG AGATTTTTAG 121 TAGAAAACAT CTGTAAAGTG TATCAAAAAA GAAGGTTTGT ATGGCTTAAA CACGATTAGC 181 AGTTGTAATG CACAGGACAT GTATTTGTTG TCATTTCCTC TCACCTGCTT CCTCATTTAC 241 AGGACGCAAC CGCAAATGAT CTCCCGAAAG GTGACTTTGA TGTTCAGGGA TTCCCTACTA 301 TGTACTTCAG ATCCGCCTCT GGTAACTTGT CACAGTACAA TGGTGAGAGA ACAAAAGAGG 361 CTATCATCGA ATTCATCGAG AAGAATCGTG GCAAGCCTGC TCAGTCAGAC TCTGCCAAAG 421 TCGATTCAGC AAAGGATGAA CTTTAGAGGT TTGGTTCTCT TCCTTAAAGC ATCAATTGTG 481 ATATCTGCCA TTATTGGTTC TTTGTGCTAC AGTAATTGTA ATTTATATTG ATCTCCTCTT 541 ATTCAGGACT CTAGGAACAT TGTGTACTGG TGGATTCAAG TTTTGTTGGA AGCATTGTGT 601 TTCTGGTGAA TTCGACCTCC CACCGGACTA CTGCTCTCTC CCAACGCTTC CGTTGTAGTT 661 TTTGGAGCTT TTCAGCGCCA ATAAAACGGT TGTATGTATC CATTTTGTGT ATCGAATGTA 721 GCTGGATTAT GAGTTTATAT TATATCTATT GAGAAGTTCT CCAACTTTAT AGTAAAAAAA 781 AAAA Predicted gene structure (within gDNA segment 1 to 1660): Exon 1 187 960 ( 774 n); cDNA 1 774 ( 774 n); score: 1.000 PPA cDNA 775 784 MATCH C06HBa0054K13.1-1+ SGN-E539990- 1.000 774 0.987 C PGS_C06HBa0054K13.1-1+_SGN-E539990- (187 960) Alignment (genomic DNA sequence = upper lines): CATAATAATC AAGAAAGAAT GTGTAGAATT AGAATCGGGT TTTTAGTATA AAAATCAGAA 246 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATAATAATC AAGAAAGAAT GTGTAGAATT AGAATCGGGT TTTTAGTATA AAAATCAGAA 60 AGAACGGGGT GGACATTTTA TCTTTGATGT TATGGATTTC GTTGTTAGAG AGATTTTTAG 306 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAACGGGGT GGACATTTTA TCTTTGATGT TATGGATTTC GTTGTTAGAG AGATTTTTAG 120 TAGAAAACAT CTGTAAAGTG TATCAAAAAA GAAGGTTTGT ATGGCTTAAA CACGATTAGC 366 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAGAAAACAT CTGTAAAGTG TATCAAAAAA GAAGGTTTGT ATGGCTTAAA CACGATTAGC 180 AGTTGTAATG CACAGGACAT GTATTTGTTG TCATTTCCTC TCACCTGCTT CCTCATTTAC 426 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTTGTAATG CACAGGACAT GTATTTGTTG TCATTTCCTC TCACCTGCTT CCTCATTTAC 240 AGGACGCAAC CGCAAATGAT CTCCCGAAAG GTGACTTTGA TGTTCAGGGA TTCCCTACTA 486 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGACGCAAC CGCAAATGAT CTCCCGAAAG GTGACTTTGA TGTTCAGGGA TTCCCTACTA 300 TGTACTTCAG ATCCGCCTCT GGTAACTTGT CACAGTACAA TGGTGAGAGA ACAAAAGAGG 546 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTACTTCAG ATCCGCCTCT GGTAACTTGT CACAGTACAA TGGTGAGAGA ACAAAAGAGG 360 CTATCATCGA ATTCATCGAG AAGAATCGTG GCAAGCCTGC TCAGTCAGAC TCTGCCAAAG 606 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTATCATCGA ATTCATCGAG AAGAATCGTG GCAAGCCTGC TCAGTCAGAC TCTGCCAAAG 420 TCGATTCAGC AAAGGATGAA CTTTAGAGGT TTGGTTCTCT TCCTTAAAGC ATCAATTGTG 666 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCGATTCAGC AAAGGATGAA CTTTAGAGGT TTGGTTCTCT TCCTTAAAGC ATCAATTGTG 480 ATATCTGCCA TTATTGGTTC TTTGTGCTAC AGTAATTGTA ATTTATATTG ATCTCCTCTT 726 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATATCTGCCA TTATTGGTTC TTTGTGCTAC AGTAATTGTA ATTTATATTG ATCTCCTCTT 540 ATTCAGGACT CTAGGAACAT TGTGTACTGG TGGATTCAAG TTTTGTTGGA AGCATTGTGT 786 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTCAGGACT CTAGGAACAT TGTGTACTGG TGGATTCAAG TTTTGTTGGA AGCATTGTGT 600 TTCTGGTGAA TTCGACCTCC CACCGGACTA CTGCTCTCTC CCAACGCTTC CGTTGTAGTT 846 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCTGGTGAA TTCGACCTCC CACCGGACTA CTGCTCTCTC CCAACGCTTC CGTTGTAGTT 660 TTTGGAGCTT TTCAGCGCCA ATAAAACGGT TGTATGTATC CATTTTGTGT ATCGAATGTA 906 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTGGAGCTT TTCAGCGCCA ATAAAACGGT TGTATGTATC CATTTTGTGT ATCGAATGTA 720 GCTGGATTAT GAGTTTATAT TATATCTATT GAGAAGTTCT CCAACTTTAT AGTA 960 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||| GCTGGATTAT GAGTTTATAT TATATCTATT GAGAAGTTCT CCAACTTTAT AGTA 774 hqPGS_C06HBa0054K13.1-1+_SGN-E539990- (187 960) ******************************************************************************** EST sequence 15 +strand 667 n (File: SGN-E354288+) 1 TTGTTAGAGA GATTTTTAGT AGAAAACATC TGTAAAGTGT ATCAAAAAAG AAGGTTTGTA 61 TGGCTTAAAC ACGATTAGCA GTTGTAATGC ACAGGACATG TATTTGTTGT CATTTCCTCT 121 CACCTGCTTC CTCATTTACA GGACGCAACC GCAAATGATC TCCCGAAAGG TGACTTTGAT 181 GTTCAGGGAT TCCCTACTAT GTACTTCAGA TCCGCCTCTG GTAACTTGTC ACAGTACAAT 241 GGTGAGAGAA CAAAAGAGGC TATCATCGAA TTCATCGAGA AGAATCGTGG CAAGCCTGCT 301 CAGTCAGACT CTGCCAAAGT CGATTCAGCA AAGGATGAAC TTTAGAGGTT TGGTTCTCTT 361 CCTTAAAGCA TCAATTGTGA TATCTGCCAT TATTGGTTCT TTGTGCTACA GTAATTGTAA 421 TTTATATTGA TCTCCTCTTA TTCAGGACTC TAGGAACATT GTGTACTGGT GGATTCAAGT 481 TTTGTTGGAA GCATTGTGTT TCTGGTGAAT TCGACCTCCC ACCGGACTAC TGCTCTCTCC 541 CAACGCTTCC GTTGTAGTTT TTGGAGCTTT TCAGCGCCAA TAAAACGGTT GTATGTATCC 601 ATTTTGTGTA TCGAATGTAG CTGGATTATG AGTTTATATT ATATCTATTG AGAAGTTCTC 661 CAACTTT Predicted gene structure (within gDNA segment 1 to 1564): Exon 1 288 954 ( 667 n); cDNA 1 667 ( 667 n); score: 1.000 MATCH C06HBa0054K13.1-1+ SGN-E354288+ 1.000 667 1.000 C PGS_C06HBa0054K13.1-1+_SGN-E354288+ (288 954) Alignment (genomic DNA sequence = upper lines): TTGTTAGAGA GATTTTTAGT AGAAAACATC TGTAAAGTGT ATCAAAAAAG AAGGTTTGTA 347 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGTTAGAGA GATTTTTAGT AGAAAACATC TGTAAAGTGT ATCAAAAAAG AAGGTTTGTA 60 TGGCTTAAAC ACGATTAGCA GTTGTAATGC ACAGGACATG TATTTGTTGT CATTTCCTCT 407 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGCTTAAAC ACGATTAGCA GTTGTAATGC ACAGGACATG TATTTGTTGT CATTTCCTCT 120 CACCTGCTTC CTCATTTACA GGACGCAACC GCAAATGATC TCCCGAAAGG TGACTTTGAT 467 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CACCTGCTTC CTCATTTACA GGACGCAACC GCAAATGATC TCCCGAAAGG TGACTTTGAT 180 GTTCAGGGAT TCCCTACTAT GTACTTCAGA TCCGCCTCTG GTAACTTGTC ACAGTACAAT 527 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTCAGGGAT TCCCTACTAT GTACTTCAGA TCCGCCTCTG GTAACTTGTC ACAGTACAAT 240 GGTGAGAGAA CAAAAGAGGC TATCATCGAA TTCATCGAGA AGAATCGTGG CAAGCCTGCT 587 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGTGAGAGAA CAAAAGAGGC TATCATCGAA TTCATCGAGA AGAATCGTGG CAAGCCTGCT 300 CAGTCAGACT CTGCCAAAGT CGATTCAGCA AAGGATGAAC TTTAGAGGTT TGGTTCTCTT 647 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAGTCAGACT CTGCCAAAGT CGATTCAGCA AAGGATGAAC TTTAGAGGTT TGGTTCTCTT 360 CCTTAAAGCA TCAATTGTGA TATCTGCCAT TATTGGTTCT TTGTGCTACA GTAATTGTAA 707 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCTTAAAGCA TCAATTGTGA TATCTGCCAT TATTGGTTCT TTGTGCTACA GTAATTGTAA 420 TTTATATTGA TCTCCTCTTA TTCAGGACTC TAGGAACATT GTGTACTGGT GGATTCAAGT 767 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTATATTGA TCTCCTCTTA TTCAGGACTC TAGGAACATT GTGTACTGGT GGATTCAAGT 480 TTTGTTGGAA GCATTGTGTT TCTGGTGAAT TCGACCTCCC ACCGGACTAC TGCTCTCTCC 827 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTGTTGGAA GCATTGTGTT TCTGGTGAAT TCGACCTCCC ACCGGACTAC TGCTCTCTCC 540 CAACGCTTCC GTTGTAGTTT TTGGAGCTTT TCAGCGCCAA TAAAACGGTT GTATGTATCC 887 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAACGCTTCC GTTGTAGTTT TTGGAGCTTT TCAGCGCCAA TAAAACGGTT GTATGTATCC 600 ATTTTGTGTA TCGAATGTAG CTGGATTATG AGTTTATATT ATATCTATTG AGAAGTTCTC 947 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTTTGTGTA TCGAATGTAG CTGGATTATG AGTTTATATT ATATCTATTG AGAAGTTCTC 660 CAACTTT 954 ||||||| CAACTTT 667 hqPGS_C06HBa0054K13.1-1+_SGN-E354288+ (288 954) ******************************************************************************** EST sequence 38 -strand 326 n (File: SGN-E287448-) 1 ACATTGTGCA CTGGTGGATT CAAGTTCTGT TGAAAGCATT GTGTTTGTGG TGAATTCGAC 61 CTCCCACCGG ATTACTGCTC TCTCCCAACG CTTCCGTTGT AGTTTTTGGA GCTTTTCAGC 121 GCCAATAAAA CGGTTGTATG TATCCATTTT GTGTATCGAA TGTAGCTGGA TTATGAGTTT 181 ATATTATATC TATTGAAAAG TTCTCCGACT TTATAGTATC AGCAGTTGAA GTTATCTTCT 241 TTGTCCCAGA ATGCTACTGT TGGAATGTAT GCCTCCTGTT GCAGTAAATA ATGATACACA 301 ATAATTAAAG AAAAAAAAAA AAAATA Predicted gene structure (within gDNA segment 1 to 1794): Exon 1 743 1061 ( 319 n); cDNA 1 319 ( 319 n); score: 0.966 MATCH C06HBa0054K13.1-1+ SGN-E287448- 0.966 319 0.979 C PGS_C06HBa0054K13.1-1+_SGN-E287448- (743 1061) Alignment (genomic DNA sequence = upper lines): ACATTGTGTA CTGGTGGATT CAAGTTTTGT TGGAAGCATT GTGTTTCTGG TGAATTCGAC 802 |||||||| | |||||||||| |||||| ||| || ||||||| |||||| ||| |||||||||| ACATTGTGCA CTGGTGGATT CAAGTTCTGT TGAAAGCATT GTGTTTGTGG TGAATTCGAC 60 CTCCCACCGG ACTACTGCTC TCTCCCAACG CTTCCGTTGT AGTTTTTGGA GCTTTTCAGC 862 |||||||||| | |||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCCCACCGG ATTACTGCTC TCTCCCAACG CTTCCGTTGT AGTTTTTGGA GCTTTTCAGC 120 GCCAATAAAA CGGTTGTATG TATCCATTTT GTGTATCGAA TGTAGCTGGA TTATGAGTTT 922 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCCAATAAAA CGGTTGTATG TATCCATTTT GTGTATCGAA TGTAGCTGGA TTATGAGTTT 180 ATATTATATC TATTGAGAAG TTCTCCAACT TTATAGTATC AGCAGTTGAA GTTATCTTCT 982 |||||||||| |||||| ||| |||||| ||| |||||||||| |||||||||| |||||||||| ATATTATATC TATTGAAAAG TTCTCCGACT TTATAGTATC AGCAGTTGAA GTTATCTTCT 240 TTGTCCCAGA ATGCTACTGT TGGAATGTAT GCCTCCTGTT GCAGTAAATA ATGATACACA 1042 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGTCCCAGA ATGCTACTGT TGGAATGTAT GCCTCCTGTT GCAGTAAATA ATGATACACA 300 ATAATTAAAG AAGTTCAAA 1061 |||||||||| || ||| ATAATTAAAG AAAAAAAAA 319 hqPGS_C06HBa0054K13.1-1+_SGN-E287448- (743 1061) ******************************************************************************** EST sequence 30 -strand 563 n (File: SGN-E283709-) 1 GAGAAGTTCT CCAACTTTAT AGTATCAGCA GTTGAAGTTA TCTTCTTTGT CCCAGAATGC 61 TACTGTTGGA ATGTATGCCT CCTGTTGCAG TAAATAATGA TACCCAATAA TTAAAGAAGT 121 TCAAAAAAAA AAAAAGTGAA ACAAGAAAAG CATAGGAGTT CAACTGGTGC AAAACCAAGA 181 ACATGGCATC CCAAACTTCA CAGCATATCT GAAGCTACAA GCTGAGATAA ATAAATTTGA 241 TTCTACTATT TTGATTTGTG TTTTGAGATT GTGGAGTAAT TGAAGGACAA AATCACCTCC 301 ACCAGGAAAA CAAACAACAG ATTGGGTAGT TTTTCCTCAT CAAATTAGAG TTAATTAATG 361 ACATGTACAG CAAATATGAG GAAGTAAAAC AAAAAAAAAA AGACAAAAAA ACTCACATCA 421 TCCCTCAACT TTTGTAATCA TTTGGGAAGG CCTTCTTTAA TTGAAAATCA TTGTGGGCTT 481 TGCAAGGATC GGAGCAACAA ATTTTGTTTC AATTAAATAA TTTGGAGTCT AATGGACTTC 541 CAACGTTAAA TGAAAAAAAA AAA Predicted gene structure (within gDNA segment 327 to 6641): Exon 1 937 1060 ( 124 n); cDNA 1 124 ( 124 n); score: 0.992 PPA cDNA 553 563 MATCH C06HBa0054K13.1-1+ SGN-E283709- 0.992 124 0.220 C PGS_C06HBa0054K13.1-1+_SGN-E283709- (937 1060) Alignment (genomic DNA sequence = upper lines): GAGAAGTTCT CCAACTTTAT AGTATCAGCA GTTGAAGTTA TCTTCTTTGT CCCAGAATGC 996 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGAAGTTCT CCAACTTTAT AGTATCAGCA GTTGAAGTTA TCTTCTTTGT CCCAGAATGC 60 TACTGTTGGA ATGTATGCCT CCTGTTGCAG TAAATAATGA TACACAATAA TTAAAGAAGT 1056 |||||||||| |||||||||| |||||||||| |||||||||| ||| |||||| |||||||||| TACTGTTGGA ATGTATGCCT CCTGTTGCAG TAAATAATGA TACCCAATAA TTAAAGAAGT 120 TCAA 1060 |||| TCAA 124 hqPGS_C06HBa0054K13.1-1+_SGN-E283709- (937 1060) Total number of EST alignments reported: 38 ________________________________________________________________________________ Predicted gene locations (1) in segment 1 to 10775: PGL 1 (+ strand): 1 1061 AGS-1 (1 108,429 634,733 949,1027 1054) SCR (e 1.000 d 1.000 a 0.935,e 1.000 d 0.988 a 0.846,e 1.000 d 0.000 a 0.786,e 0.607) Exon 1 1 108 ( 108 n); score: 1.000 Intron 1 109 428 ( 320 n); Pd: 1.000 Pa: 0.935 Exon 2 429 634 ( 206 n); score: 1.000 Intron 2 635 732 ( 98 n); Pd: 0.988 Pa: 0.846 Exon 3 733 949 ( 217 n); score: 1.000 Intron 3 950 1026 ( 77 n); Pd: 0.000 Pa: 0.786 Exon 4 1027 1054 ( 28 n); score: 0.607 PGS (1 108,429 634,733 949,1027 1054) SGN-E551806+ PGS (1 108,429 634,733 968) SGN-E314484+ PGS (1 108,429 634,733 953) SGN-E246249- PGS (1 108,429 634,733 950) SGN-E543832- PGS (1 108,429 634,733 948) SGN-E548944- PGS (1 108,429 634,733 947) SGN-E553391+ PGS (1 108,429 634,733 947) SGN-E556457+ PGS (1 108,429 634,733 946) SGN-E552339+ PGS (1 108,429 634,733 946) SGN-E356569+ PGS (1 108,429 634,733 937) SGN-E344174+ PGS (1 108,429 634,733 862) SGN-E279446+ PGS (1 108,429 634) SGN-E244435+ PGS (1 108,429 629) SGN-E211166+ PGS (1 108,429 594) SGN-E273849+ PGS (1 108,429 568) SGN-E351306+ PGS (1 108,429 540) SGN-E273841+ PGS (1 108,429 535) SGN-E208077+ PGS (1 108,429 529) SGN-E326919+ PGS (1 108,429 509) SGN-E250966+ PGS (1 108) SGN-E267069+ PGS (1 78) SGN-E264284+ PGS (1 76) SGN-E262877+ PGS (1 51) SGN-E253878+ PGS (33 108,429 634,733 960) SGN-E555031+ PGS (40 108,429 634,733 941) SGN-E288638- PGS (67 108,429 634,733 958) SGN-E227495- PGS (429 634,733 972) SGN-E221794- PGS (442 634,733 972) SGN-E221708- PGS (540 634,733 972) SGN-E229203- PGS (558 634,733 956) SGN-E228723- 3-phase translation of AGS-1 (+strand): . . . . . . 1 TTAGAGTTCTATGCACCTTGGTGTGGCCACTGCAAGAGTCTGGCTCCAATTTTGGATGAA L E F Y A P W C G H C K S L A P I L D E - S S M H L G V A T A R V W L Q F W M K R V L C T L V W P L Q E S G S N F G - . . . . . : . 61 GTGGCTGTATCATTTGAAAGCGATCCTGATGTTCTCATTGCAAAACTG : GACGCAACCGCA V A V S F E S D P D V L I A K L : D A T A W L Y H L K A I L M F S L Q N W : T Q P Q S G C I I - K R S - C S H C K T : G R N R . . . . . . 441 AATGATCTCCCGAAAGGTGACTTTGATGTTCAGGGATTCCCTACTATGTACTTCAGATCC N D L P K G D F D V Q G F P T M Y F R S M I S R K V T L M F R D S L L C T S D P K - S P E R - L - C S G I P Y Y V L Q I . . . . . . 501 GCCTCTGGTAACTTGTCACAGTACAATGGTGAGAGAACAAAAGAGGCTATCATCGAATTC A S G N L S Q Y N G E R T K E A I I E F P L V T C H S T M V R E Q K R L S S N S R L W - L V T V Q W - E N K R G Y H R I . . . . . . 561 ATCGAGAAGAATCGTGGCAAGCCTGCTCAGTCAGACTCTGCCAAAGTCGATTCAGCAAAG I E K N R G K P A Q S D S A K V D S A K S R R I V A S L L S Q T L P K S I Q Q R H R E E S W Q A C S V R L C Q S R F S K . . : . . . . 621 GATGAACTTTAGAG : GACTCTAGGAACATTGTGTACTGGTGGATTCAAGTTTTGTTGGAAG D E L - R : T L G T L C T G G F K F C W K M N F R : G L - E H C V L V D S S F V G S G - T L E : D S R N I V Y W W I Q V L L E . . . . . . 779 CATTGTGTTTCTGGTGAATTCGACCTCCCACCGGACTACTGCTCTCTCCCAACGCTTCCG H C V S G E F D L P P D Y C S L P T L P I V F L V N S T S H R T T A L S Q R F R A L C F W - I R P P T G L L L S P N A S . . . . . . 839 TTGTAGTTTTTGGAGCTTTTCAGCGCCAATAAAACGGTTGTATGTATCCATTTTGTGTAT L - F L E L F S A N K T V V C I H F V Y C S F W S F S A P I K R L Y V S I L C I V V V F G A F Q R Q - N G C M Y P F C V . . . . . . : 899 CGAATGTAGCTGGATTATGAGTTTATATTATATCTATTGAGAAGTTCTCCA : TAAATAATG R M - L D Y E F I L Y L L R S S P : - I M E C S W I M S L Y Y I Y - E V L H : K - - S N V A G L - V Y I I S I E K F S : I N N . . 1036 ATACACAATAATTAAAGAA I H N N - R Y T I I K E D T Q - L K Maximal non-overlapping open reading frames (>= 64 codons): >C06HBa0054K13.1-1+_PGL-1_AGS-1_PPS_1 (5 108,429 634,733 740) (frame '2'; 315 bp, 105 residues) 1 SSMHLGVATA RVWLQFWMKW LYHLKAILMF SLQNWTQPQM ISRKVTLMFR DSLLCTSDPP 61 LVTCHSTMVR EQKRLSSNSS RRIVASLLSQ TLPKSIQQRM NFRGL- >C06HBa0054K13.1-1+_PGL-1_AGS-1_PPS_2 (1 108,429 632) (frame '1'; 309 bp, 103 residues) 1 LEFYAPWCGH CKSLAPILDE VAVSFESDPD VLIAKLDATA NDLPKGDFDV QGFPTMYFRS 61 ASGNLSQYNG ERTKEAIIEF IEKNRGKPAQ SDSAKVDSAK DEL- >C06HBa0054K13.1-1+_PGL-1_AGS-1_PPS_3 (741 938) (frame '2'; 195 bp, 65 residues) 1 EHCVLVDSSF VGSIVFLVNS TSHRTTALSQ RFRCSFWSFS APIKRLYVSI LCIECSWIMS 61 LYYIY- AGS-2 (1 158) SCR (e 1.000) Exon 1 1 158 ( 158 n); score: 1.000 PGS (1 158) SGN-E539993+ 3-phase translation of AGS-2 (+strand): . . . . . . 1 TTAGAGTTCTATGCACCTTGGTGTGGCCACTGCAAGAGTCTGGCTCCAATTTTGGATGAA L E F Y A P W C G H C K S L A P I L D E - S S M H L G V A T A R V W L Q F W M K R V L C T L V W P L Q E S G S N F G - . . . . . . 61 GTGGCTGTATCATTTGAAAGCGATCCTGATGTTCTCATTGCAAAACTGGTAAGAACTTTT V A V S F E S D P D V L I A K L V R T F W L Y H L K A I L M F S L Q N W - E L F S G C I I - K R S - C S H C K T G K N F . . . . 121 TTCATAAACTAAACATGGATATTTGATGCATGTATCTA F I N - T W I F D A C I S - T K H G Y L M H V S F H K L N M D I - C M Y L Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-2 (-strand): . . . . . . 158 TAGATACATGCATCAAATATCCATGTTTAGTTTATGAAAAAAGTTCTTACCAGTTTTGCA - I H A S N I H V - F M K K V L T S F A R Y M H Q I S M F S L - K K F L P V L Q D T C I K Y P C L V Y E K S S Y Q F C . . . . . . 98 ATGAGAACATCAGGATCGCTTTCAAATGATACAGCCACTTCATCCAAAATTGGAGCCAGA M R T S G S L S N D T A T S S K I G A R - E H Q D R F Q M I Q P L H P K L E P D N E N I R I A F K - Y S H F I Q N W S Q . . . . 38 CTCTTGCAGTGGCCACACCAAGGTGCATAGAACTCTAA L L Q W P H Q G A - N S S C S G H T K V H R T L T L A V A T P R C I E L - Maximal non-overlapping open reading frames (>= 64 codons): none AGS-3 (40 108,429 634,733 1061) SCR (e 1.000 d 1.000 a 0.935,e 1.000 d 0.988 a 0.846,e 1.000) Exon 1 40 108 ( 69 n); score: 1.000 Intron 1 109 428 ( 320 n); Pd: 1.000 Pa: 0.935 Exon 2 429 634 ( 206 n); score: 1.000 Intron 2 635 732 ( 98 n); Pd: 0.988 Pa: 0.846 Exon 3 733 1061 ( 329 n); score: 1.000 PGS (40 108,429 634,733 1061) SGN-E349477+ PGS (72 108,429 634,733 1060) SGN-E250179- PGS (607 634,733 1061) SGN-E357363+ PGS (743 1061) SGN-E287448- PGS (937 1060) SGN-E283709- 3-phase translation of AGS-3 (+strand): . . . . . . 40 CTGGCTCCAATTTTGGATGAAGTGGCTGTATCATTTGAAAGCGATCCTGATGTTCTCATT L A P I L D E V A V S F E S D P D V L I W L Q F W M K W L Y H L K A I L M F S L G S N F G - S G C I I - K R S - C S H . : . . . . . 100 GCAAAACTG : GACGCAACCGCAAATGATCTCCCGAAAGGTGACTTTGATGTTCAGGGATTC A K L : D A T A N D L P K G D F D V Q G F Q N W : T Q P Q M I S R K V T L M F R D S C K T : G R N R K - S P E R - L - C S G I . . . . . . 480 CCTACTATGTACTTCAGATCCGCCTCTGGTAACTTGTCACAGTACAATGGTGAGAGAACA P T M Y F R S A S G N L S Q Y N G E R T L L C T S D P P L V T C H S T M V R E Q P Y Y V L Q I R L W - L V T V Q W - E N . . . . . . 540 AAAGAGGCTATCATCGAATTCATCGAGAAGAATCGTGGCAAGCCTGCTCAGTCAGACTCT K E A I I E F I E K N R G K P A Q S D S K R L S S N S S R R I V A S L L S Q T L K R G Y H R I H R E E S W Q A C S V R L . . . . : . . 600 GCCAAAGTCGATTCAGCAAAGGATGAACTTTAGAG : GACTCTAGGAACATTGTGTACTGGT A K V D S A K D E L - R : T L G T L C T G P K S I Q Q R M N F R : G L - E H C V L V C Q S R F S K G - T L E : D S R N I V Y W . . . . . . 758 GGATTCAAGTTTTGTTGGAAGCATTGTGTTTCTGGTGAATTCGACCTCCCACCGGACTAC G F K F C W K H C V S G E F D L P P D Y D S S F V G S I V F L V N S T S H R T T W I Q V L L E A L C F W - I R P P T G L . . . . . . 818 TGCTCTCTCCCAACGCTTCCGTTGTAGTTTTTGGAGCTTTTCAGCGCCAATAAAACGGTT C S L P T L P L - F L E L F S A N K T V A L S Q R F R C S F W S F S A P I K R L L L S P N A S V V V F G A F Q R Q - N G . . . . . . 878 GTATGTATCCATTTTGTGTATCGAATGTAGCTGGATTATGAGTTTATATTATATCTATTG V C I H F V Y R M - L D Y E F I L Y L L Y V S I L C I E C S W I M S L Y Y I Y - C M Y P F C V S N V A G L - V Y I I S I . . . . . . 938 AGAAGTTCTCCAACTTTATAGTATCAGCAGTTGAAGTTATCTTCTTTGTCCCAGAATGCT R S S P T L - Y Q Q L K L S S L S Q N A E V L Q L Y S I S S - S Y L L C P R M L E K F S N F I V S A V E V I F F V P E C . . . . . . 998 ACTGTTGGAATGTATGCCTCCTGTTGCAGTAAATAATGATACACAATAATTAAAGAAGTT T V G M Y A S C C S K - - Y T I I K E V L L E C M P P V A V N N D T Q - L K K F Y C W N V C L L L Q - I M I H N N - R S . 1058 CAAA Q K S Maximal non-overlapping open reading frames (>= 64 codons): >C06HBa0054K13.1-1+_PGL-1_AGS-3_PPS_1 (41 108,429 634,733 740) (frame '2'; 279 bp, 93 residues) 1 WLQFWMKWLY HLKAILMFSL QNWTQPQMIS RKVTLMFRDS LLCTSDPPLV TCHSTMVREQ 61 KRLSSNSSRR IVASLLSQTL PKSIQQRMNF RGL- >C06HBa0054K13.1-1+_PGL-1_AGS-3_PPS_2 (40 108,429 632) (frame '1'; 270 bp, 90 residues) 1 LAPILDEVAV SFESDPDVLI AKLDATANDL PKGDFDVQGF PTMYFRSASG NLSQYNGERT 61 KEAIIEFIEK NRGKPAQSDS AKVDSAKDEL - >C06HBa0054K13.1-1+_PGL-1_AGS-3_PPS_3 (741 938) (frame '2'; 195 bp, 65 residues) 1 EHCVLVDSSF VGSIVFLVNS TSHRTTALSQ RFRCSFWSFS APIKRLYVSI LCIECSWIMS 61 LYYIY- AGS-4 (187 960) SCR (e 1.000) Exon 1 187 960 ( 774 n); score: 1.000 PGS (187 960) SGN-E539990- PGS (288 954) SGN-E354288+ 3-phase translation of AGS-4 (+strand): . . . . . . 187 CATAATAATCAAGAAAGAATGTGTAGAATTAGAATCGGGTTTTTAGTATAAAAATCAGAA H N N Q E R M C R I R I G F L V - K S E I I I K K E C V E L E S G F - Y K N Q K - - S R K N V - N - N R V F S I K I R . . . . . . 247 AGAACGGGGTGGACATTTTATCTTTGATGTTATGGATTTCGTTGTTAGAGAGATTTTTAG R T G W T F Y L - C Y G F R C - R D F - E R G G H F I F D V M D F V V R E I F S K N G V D I L S L M L W I S L L E R F L . . . . . . 307 TAGAAAACATCTGTAAAGTGTATCAAAAAAGAAGGTTTGTATGGCTTAAACACGATTAGC - K T S V K C I K K E G L Y G L N T I S R K H L - S V S K K K V C M A - T R L A V E N I C K V Y Q K R R F V W L K H D - . . . . . . 367 AGTTGTAATGCACAGGACATGTATTTGTTGTCATTTCCTCTCACCTGCTTCCTCATTTAC S C N A Q D M Y L L S F P L T C F L I Y V V M H R T C I C C H F L S P A S S F T Q L - C T G H V F V V I S S H L L P H L . . . . . . 427 AGGACGCAACCGCAAATGATCTCCCGAAAGGTGACTTTGATGTTCAGGGATTCCCTACTA R T Q P Q M I S R K V T L M F R D S L L G R N R K - S P E R - L - C S G I P Y Y Q D A T A N D L P K G D F D V Q G F P T . . . . . . 487 TGTACTTCAGATCCGCCTCTGGTAACTTGTCACAGTACAATGGTGAGAGAACAAAAGAGG C T S D P P L V T C H S T M V R E Q K R V L Q I R L W - L V T V Q W - E N K R G M Y F R S A S G N L S Q Y N G E R T K E . . . . . . 547 CTATCATCGAATTCATCGAGAAGAATCGTGGCAAGCCTGCTCAGTCAGACTCTGCCAAAG L S S N S S R R I V A S L L S Q T L P K Y H R I H R E E S W Q A C S V R L C Q S A I I E F I E K N R G K P A Q S D S A K . . . . . . 607 TCGATTCAGCAAAGGATGAACTTTAGAGGTTTGGTTCTCTTCCTTAAAGCATCAATTGTG S I Q Q R M N F R G L V L F L K A S I V R F S K G - T L E V W F S S L K H Q L - V D S A K D E L - R F G S L P - S I N C . . . . . . 667 ATATCTGCCATTATTGGTTCTTTGTGCTACAGTAATTGTAATTTATATTGATCTCCTCTT I S A I I G S L C Y S N C N L Y - S P L Y L P L L V L C A T V I V I Y I D L L L D I C H Y W F F V L Q - L - F I L I S S . . . . . . 727 ATTCAGGACTCTAGGAACATTGTGTACTGGTGGATTCAAGTTTTGTTGGAAGCATTGTGT I Q D S R N I V Y W W I Q V L L E A L C F R T L G T L C T G G F K F C W K H C V Y S G L - E H C V L V D S S F V G S I V . . . . . . 787 TTCTGGTGAATTCGACCTCCCACCGGACTACTGCTCTCTCCCAACGCTTCCGTTGTAGTT F W - I R P P T G L L L S P N A S V V V S G E F D L P P D Y C S L P T L P L - F F L V N S T S H R T T A L S Q R F R C S . . . . . . 847 TTTGGAGCTTTTCAGCGCCAATAAAACGGTTGTATGTATCCATTTTGTGTATCGAATGTA F G A F Q R Q - N G C M Y P F C V S N V L E L F S A N K T V V C I H F V Y R M - F W S F S A P I K R L Y V S I L C I E C . . . . . . 907 GCTGGATTATGAGTTTATATTATATCTATTGAGAAGTTCTCCAACTTTATAGTA A G L - V Y I I S I E K F S N F I V L D Y E F I L Y L L R S S P T L - S W I M S L Y Y I Y - E V L Q L Y S Maximal non-overlapping open reading frames (>= 64 codons): >C06HBa0054K13.1-1+_PGL-1_AGS-4_PPS_1 (310 717) (frame '1'; 405 bp, 135 residues) 1 KTSVKCIKKE GLYGLNTISS CNAQDMYLLS FPLTCFLIYR TQPQMISRKV TLMFRDSLLC 61 TSDPPLVTCH STMVREQKRL SSNSSRRIVA SLLSQTLPKS IQQRMNFRGL VLFLKASIVI 121 SAIIGSLCYS NCNLY- >C06HBa0054K13.1-1+_PGL-1_AGS-4_PPS_2 (741 938) (frame '0'; 195 bp, 65 residues) 1 EHCVLVDSSF VGSIVFLVNS TSHRTTALSQ RFRCSFWSFS APIKRLYVSI LCIECSWIMS 61 LYYIY- 3-phase translation of AGS-4 (-strand): . . . . . . 960 TACTATAAAGTTGGAGAACTTCTCAATAGATATAATATAAACTCATAATCCAGCTACATT Y Y K V G E L L N R Y N I N S - S S Y I T I K L E N F S I D I I - T H N P A T F L - S W R T S Q - I - Y K L I I Q L H . . . . . . 900 CGATACACAAAATGGATACATACAACCGTTTTATTGGCGCTGAAAAGCTCCAAAAACTAC R Y T K W I H T T V L L A L K S S K N Y D T Q N G Y I Q P F Y W R - K A P K T T S I H K M D T Y N R F I G A E K L Q K L . . . . . . 840 AACGGAAGCGTTGGGAGAGAGCAGTAGTCCGGTGGGAGGTCGAATTCACCAGAAACACAA N G S V G R E Q - S G G R S N S P E T Q T E A L G E S S S P V G G R I H Q K H N Q R K R W E R A V V R W E V E F T R N T . . . . . . 780 TGCTTCCAACAAAACTTGAATCCACCAGTACACAATGTTCCTAGAGTCCTGAATAAGAGG C F Q Q N L N P P V H N V P R V L N K R A S N K T - I H Q Y T M F L E S - I R G M L P T K L E S T S T Q C S - S P E - E . . . . . . 720 AGATCAATATAAATTACAATTACTGTAGCACAAAGAACCAATAATGGCAGATATCACAAT R S I - I T I T V A Q R T N N G R Y H N D Q Y K L Q L L - H K E P I M A D I T I E I N I N Y N Y C S T K N Q - W Q I S Q . . . . . . 660 TGATGCTTTAAGGAAGAGAACCAAACCTCTAAAGTTCATCCTTTGCTGAATCGACTTTGG - C F K E E N Q T S K V H P L L N R L W D A L R K R T K P L K F I L C - I D F G L M L - G R E P N L - S S S F A E S T L . . . . . . 600 CAGAGTCTGACTGAGCAGGCTTGCCACGATTCTTCTCGATGAATTCGATGATAGCCTCTT Q S L T E Q A C H D S S R - I R - - P L R V - L S R L A T I L L D E F D D S L F A E S D - A G L P R F F S M N S M I A S . . . . . . 540 TTGTTCTCTCACCATTGTACTGTGACAAGTTACCAGAGGCGGATCTGAAGTACATAGTAG L F S H H C T V T S Y Q R R I - S T - - C S L T I V L - Q V T R G G S E V H S R F V L S P L Y C D K L P E A D L K Y I V . . . . . . 480 GGAATCCCTGAACATCAAAGTCACCTTTCGGGAGATCATTTGCGGTTGCGTCCTGTAAAT G I P E H Q S H L S G D H L R L R P V N E S L N I K V T F R E I I C G C V L - M G N P - T S K S P F G R S F A V A S C K . . . . . . 420 GAGGAAGCAGGTGAGAGGAAATGACAACAAATACATGTCCTGTGCATTACAACTGCTAAT E E A G E R K - Q Q I H V L C I T T A N R K Q V R G N D N K Y M S C A L Q L L I - G S R - E E M T T N T C P V H Y N C - . . . . . . 360 CGTGTTTAAGCCATACAAACCTTCTTTTTTGATACACTTTACAGATGTTTTCTACTAAAA R V - A I Q T F F F D T L Y R C F L L K V F K P Y K P S F L I H F T D V F Y - K S C L S H T N L L F - Y T L Q M F S T K . . . . . . 300 ATCTCTCTAACAACGAAATCCATAACATCAAAGATAAAATGTCCACCCCGTTCTTTCTGA I S L T T K S I T S K I K C P P R S F - S L - Q R N P - H Q R - N V H P V L S D N L S N N E I H N I K D K M S T P F F L . . . . . . 240 TTTTTATACTAAAAACCCGATTCTAATTCTACACATTCTTTCTTGATTATTATG F L Y - K P D S N S T H S F L I I M F Y T K N P I L I L H I L S - L L I F I L K T R F - F Y T F F L D Y Y Maximal non-overlapping open reading frames (>= 64 codons): none ... finished at: Mon Aug 28 22:09:28 2006 ________________________________________________________________________________ Sequence 2: C06HBa0054K13.1-2, from 1 to 3478, both strands analyzed. ... started at: Mon Aug 28 22:09:28 2006 EST library file: /tmp/cxgn-bacpublish-resources-LF1h7Z/sgn_ests; matching gDNA +strand ... ... found all matches, elapsed seconds = 5 ... matches indexed, elapsed seconds = 5 HitsTableSize = 0 EST library file: /tmp/cxgn-bacpublish-resources-LF1h7Z/sgn_ests; matching gDNA -strand ... ... found all matches, elapsed seconds = 4 ... matches indexed, elapsed seconds = 4 HitsTableSize = 0 No significant EST matches were found. ... finished at: Mon Aug 28 22:09:37 2006 ________________________________________________________________________________ Sequence 3: C06HBa0054K13.1-3, from 1 to 11062, both strands analyzed. ... started at: Mon Aug 28 22:09:37 2006 EST library file: /tmp/cxgn-bacpublish-resources-LF1h7Z/sgn_ests; matching gDNA +strand ... ... found all matches, elapsed seconds = 4 ... matches indexed, elapsed seconds = 4 HitsTableSize = 2 EST library file: /tmp/cxgn-bacpublish-resources-LF1h7Z/sgn_ests; matching gDNA -strand ... ... found all matches, elapsed seconds = 3 ... matches indexed, elapsed seconds = 3 HitsTableSize = 2 ******************************************************************************** EST sequence 1 +strand 523 n (File: SGN-E303971+) 1 TGAGATTTCT AAATTTGTTG AGTTTTTTCC CTCAGGTATC TCAACTATGT CATTTTCTTA 61 TTGAATCATT GAACCCCCAT AATCTGTTCC GTTTAAACAA ACACTGTTGT CTGATGTGGA 121 ACCATATTCG TGAGGGGTAT TGATAGAAGA TACATATGTT GTTCCTGAAC TCATTAGTCC 181 AATTGATAGT GAAAATGTTC GAGAATAATT GTGTTTCACT TAAGTGATTT GAAGACATTA 241 GAAAACAAAT GAGATTAACA CGGCTTGTGT TCATTCGTTC AATCAAAATT ATTACAATTC 301 GAACACAATT GGAGACATTT ACAATAGAAA AGTCGATCAA AATCAACCAA CAGTATTTTA 361 AAGGAATAAA TTATGGGTGG TTTAATGATG AGGAAAAAAA TCCAACTAAT TTAAGGATCT 421 GTTTATGTAT TTGACCTTAA TATATATATA TATGTTATTA ATGAGCGTAG GCATGGAGTA 481 ATGGAAGAAT ATATTCACCA AGACACCAAG TGTTGATGAA AGA Predicted gene structure (within gDNA segment 9176 to 11062): Exon 1 10774 11062 ( 289 n); cDNA 54 342 ( 289 n); score: 0.907 MATCH C06HBa0054K13.1-3+ SGN-E303971+ 0.907 289 0.553 C PGS_C06HBa0054K13.1-3+_SGN-E303971+ (10774 11062) Alignment (genomic DNA sequence = upper lines): TTTCCTATTG AATCATTGAA TTCTCATAAT TTGTTCCCTT TAAACAAACA CCGTTGTCTG 10833 |||| ||||| |||||||||| | |||||| |||||| || |||||||||| | |||||||| TTTCTTATTG AATCATTGAA CCCCCATAAT CTGTTCCGTT TAAACAAACA CTGTTGTCTG 113 ATGTGGAACC AGATTTATGA GGGGTATTGA TAGAGGATAC ATATGTTGTT CCACAACTCA 10893 |||||||||| | ||| ||| |||||||||| |||| ||||| |||||||||| || |||||| ATGTGGAACC ATATTCGTGA GGGGTATTGA TAGAAGATAC ATATGTTGTT CCTGAACTCA 173 TTAGTCCAAT TGATAGTGAA AATGTTCGAG AATAATTGTG TTTTACTTAA GTCATTTGAA 10953 |||||||||| |||||||||| |||||||||| |||||||||| ||| |||||| || ||||||| TTAGTCCAAT TGATAGTGAA AATGTTCGAG AATAATTGTG TTTCACTTAA GTGATTTGAA 233 AACATTAGAA AACAAATGAG ACTAACACGG TTTGTTTTCA TTCCTTCAAT CAAAATTATT 11013 ||||||||| |||||||||| | |||||||| |||| |||| ||| |||||| |||||||||| GACATTAGAA AACAAATGAG ATTAACACGG CTTGTGTTCA TTCGTTCAAT CAAAATTATT 293 ACGATTCGAA CACAATTAAA AGCATTTACA ATAGAAAAGC TGATCAAAA 11062 || ||||||| ||||||| | |||||||| ||||||||| |||||||| ACAATTCGAA CACAATTGGA GACATTTACA ATAGAAAAGT CGATCAAAA 342 hqPGS_C06HBa0054K13.1-3+_SGN-E303971+ (10774 11062) ******************************************************************************** EST sequence 2 +strand 788 n (File: SGN-E548841+) 1 ATGAGATTTC TAAATTTGTT GAGTTTTTTC CCTCAGGTAT CTCAACTATG TCATTTTCTT 61 ATTGAATCAT TGAACCCCCA TAATCTGTTC CGTTTAAACA AACACTGTTG TCTGATGTGG 121 AACCATATTC GTGAGGGGTA TTGATAGAAG ATACATATGT TGTTCCTGAA CTCATTAGTC 181 CAATTGATAG TGAAAATGTT CGAGAATAAT TGTGTTTCAC TTAAGTGATT TGAAGACATT 241 AGAAAACAAA TGAGATTAAC ACGGTTTGTG TTCATTCGTT CAATCAAAAT TATTACAATT 301 CGAACACAAT TGGAGACATT TACAATAGAA AAGTCGATCA AAATCAACCA ACAGTATTTT 361 AAAGGAATAA ATTATGGGTG GTTTAATGAT GAGGAAAAAA ATCCAACTAA TTTAAGGATC 421 TGTTTATGTA TTTGACCTTA ATATATATAT ATATGTTATT AATGAGCGTA GGCATGGAGT 481 AATGGAAGAA TATATTCACC AAGACACCAA GTGTTGATGA AAGAGGATAA GCAAAGGTAT 541 ACATTGGCGT TATTCACATT CAATAAAGGA ATAACAGATA TACCTGAGGA ATTGGTGGAT 601 GAAACACATC CTTTACAATA CAAGCCTTTT GATAATTTTG ATTTAGTTAT GTACTACAGT 661 ACTGGTGCTA GCCCCATGGC TTATGGCACT GCTAAACCTT ACTGTGGTAT TAATGCTCAA 721 TAGATACCTA TTTTATTATA AATAATATGA GTTCAAACTA GTTTTACGAT GAACTCTATG 781 TGTAATTT Predicted gene structure (within gDNA segment 9166 to 11062): Exon 1 10774 11062 ( 289 n); cDNA 55 343 ( 289 n); score: 0.910 MATCH C06HBa0054K13.1-3+ SGN-E548841+ 0.910 289 0.367 C PGS_C06HBa0054K13.1-3+_SGN-E548841+ (10774 11062) Alignment (genomic DNA sequence = upper lines): TTTCCTATTG AATCATTGAA TTCTCATAAT TTGTTCCCTT TAAACAAACA CCGTTGTCTG 10833 |||| ||||| |||||||||| | |||||| |||||| || |||||||||| | |||||||| TTTCTTATTG AATCATTGAA CCCCCATAAT CTGTTCCGTT TAAACAAACA CTGTTGTCTG 114 ATGTGGAACC AGATTTATGA GGGGTATTGA TAGAGGATAC ATATGTTGTT CCACAACTCA 10893 |||||||||| | ||| ||| |||||||||| |||| ||||| |||||||||| || |||||| ATGTGGAACC ATATTCGTGA GGGGTATTGA TAGAAGATAC ATATGTTGTT CCTGAACTCA 174 TTAGTCCAAT TGATAGTGAA AATGTTCGAG AATAATTGTG TTTTACTTAA GTCATTTGAA 10953 |||||||||| |||||||||| |||||||||| |||||||||| ||| |||||| || ||||||| TTAGTCCAAT TGATAGTGAA AATGTTCGAG AATAATTGTG TTTCACTTAA GTGATTTGAA 234 AACATTAGAA AACAAATGAG ACTAACACGG TTTGTTTTCA TTCCTTCAAT CAAAATTATT 11013 ||||||||| |||||||||| | |||||||| ||||| |||| ||| |||||| |||||||||| GACATTAGAA AACAAATGAG ATTAACACGG TTTGTGTTCA TTCGTTCAAT CAAAATTATT 294 ACGATTCGAA CACAATTAAA AGCATTTACA ATAGAAAAGC TGATCAAAA 11062 || ||||||| ||||||| | |||||||| ||||||||| |||||||| ACAATTCGAA CACAATTGGA GACATTTACA ATAGAAAAGT CGATCAAAA 343 hqPGS_C06HBa0054K13.1-3+_SGN-E548841+ (10774 11062) ******************************************************************************** EST sequence 4 -strand 689 n (File: SGN-E347070-) 1 TTGTCAGATA TAGGATTTTT AAAATTTTAA CGCTATTGTT CCACTAAATG ACATTCAAGT 61 AAAGTCGGGG CTCATAAAAT TCAGAATTTA TAAAATTTAA ATTTTAAATT CGTTCGTACA 121 TTAAAAAAAA GGCCAAGTAT ATAAACAAAT TTATAAACTT GTTGGGTTTT TTCTCAAATA 181 CTTTAACTAG GCTATTTTCC TATTAAATTA TTGAATCACC CATAATTTTG TTCCTTTTAA 241 ACACCGTTGA TCGATGTGGA TCAGATTTTG TTAGGGGTAT TGGTAGATAT GCATATGTTG 301 TTCTAGAACT CATTAGACCA ATTGATAGTG AAATTGTTCG AGAATAATTG TATTTACTCG 361 AAATCATTTG AACACATTAG AAAACAAATG AGACTAACAA ACAATTTGTC TTCATTTCTT 421 CAATCAAAAT TATTACAATA CAAACACAGT TGAATACATT TACAATAGGA AAAATAATCA 481 AAATCAGTTA GCAGTGTTTT AAAGGAATAA AATATGAGTA GTTTATGATT CAATAGAAAA 541 ATGGCGTAGG TAAAATATCT AAAGAAAAAA AACCTAACAA GAAATCTGTT TATGAGTTTG 601 ACCTAAAAAA ACGAACACAA ACTCAAGTAA ATAAGTAAAT CTCTTTACTC ACCTGGAATT 661 TCTGTTTTCA ACACATAATC TGTCTCAGT Predicted gene structure (within gDNA segment 6519 to 11062): Exon 1 7289 7301 ( 13 n); cDNA 148 160 ( 13 n); score: 0.846 Intron 1 7302 7335 ( 34 n); Pd: 0.967 (s: 0), Pa: 0.982 (s: 0) Exon 2 7336 7345 ( 10 n); cDNA 161 170 ( 10 n); score: 0.600 Intron 2 7346 9553 (2208 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0) Exon 3 9554 9576 ( 23 n); cDNA 171 190 ( 20 n); score: 0.696 Intron 3 9577 10448 ( 872 n); Pd: 0.574 (s: 0), Pa: 0.774 (s: 0) Exon 4 10449 10455 ( 7 n); cDNA 191 197 ( 7 n); score: 0.571 Intron 4 10456 10775 ( 320 n); Pd: 0.900 (s: 0), Pa: 0.000 (s: 0.72) Exon 5 10776 11062 ( 287 n); cDNA 198 483 ( 286 n); score: 0.796 MATCH C06HBa0054K13.1-3+ SGN-E347070- 0.796 340 0.493 C PGS_C06HBa0054K13.1-3+_SGN-E347070- (7289 7301,7336 7345,9554 9576,10449 10455,10776 11062) Alignment (genomic DNA sequence = upper lines): AATATATAAA CCTGTAAGCA CTTGCTTTCT TCTTGACTTC TTTGTAGATT TGGTTGGGCA 7348 ||| |||||| | | || |||| AATTTATAAA CTT....... .......... .......... .......GTT GGGTTTT... 170 TGGTTTTACA TTAAATCGAG AGTCACCACA AAGTGCATCA TTGAATAGGA AGGACTGGCT 7408 .......... .......... .......... .......... .......... .......... 170 AGTGATGTTT GCAAAAGGAC CTCCAATAGG AATTTCTCCA CTGAGCTTAT TGAATGAGAA 7468 .......... .......... .......... .......... .......... .......... 170 ATTCATGTAT TTGAGATACA CAAGAGCTTC TAATGACTTT GGAATTTCAC CACTAAGATT 7528 .......... .......... .......... .......... .......... .......... 170 GTTATCGCAC AAATCCAAGA ATTCTAATGC TAACATTTTG CCAAATGAAT CTGGAATAGA 7588 .......... .......... .......... .......... .......... .......... 170 CCCCTCTAAT CTATTATGTG CCAAAGAAAG ATTAATCAAG TTATCTAGAC CCCCTAGCGT 7648 .......... .......... .......... .......... .......... .......... 170 GCTAGGAATT TTACCAGAAA AATCATTTTT TGACAGATCA ATGAGTGTTG CAGCCTTCAA 7708 .......... .......... .......... .......... .......... .......... 170 GTTTCCAATC TCGAAGGGAA TTTCCCCACT CAATAAATTT GATGAAATAT TTAATTCTAT 7768 .......... .......... .......... .......... .......... .......... 170 GAGATCACGA AGCCCCCCCA AGCTTGCAGG TAATCTTGAA TTAAGCCTAT TATAAGCTAG 7828 .......... .......... .......... .......... .......... .......... 170 ATAAAGTGTC CTCAAACTAG TAACACTCCC TAAGCATGGT GGCACTGAGC CAGAAAACTG 7888 .......... .......... .......... .......... .......... .......... 170 ATTTCTTGAC AAGTCTAATG CACCAAGATT GTTTAAACCG CACATAACAT CTGGTATGCG 7948 .......... .......... .......... .......... .......... .......... 170 TCCTTCTATC TTGTTTCTTT GTAGGTAAAG TTCTTGAAGG CTCAACATTC CTTGGACAGT 8008 .......... .......... .......... .......... .......... .......... 170 ATTTGGAATA TGTCCCGTCA ATTCGTTGTA TTGCAGAGCT ATGCTTATCA CTCCTGTAAG 8068 .......... .......... .......... .......... .......... .......... 170 ATTACCAATT TCTCGAGGAA TGGTGCCCTT TAATTTACAA CCATTTCCTG CAAAATTTTT 8128 .......... .......... .......... .......... .......... .......... 170 CAGTGAGTTT GAGAAATTAC CAACTGATGC AGGTAAGACA CCATCCAATG GATTTCCATA 8188 .......... .......... .......... .......... .......... .......... 170 AAACCAGAGT GATCTTAGCT TCCTACACTT TGTCAATGAT GTGAGGAAGC TCAATGTTGA 8248 .......... .......... .......... .......... .......... .......... 170 ATCACTAACA AAGTTACTTC CCCACAAGCT CAGAACCTCA AGGTACATTA AGTTACCAAG 8308 .......... .......... .......... .......... .......... .......... 170 TGATTCTGGA ATCGGACCTG TGAAACTATT GCCTGAGAGC TCAAGTATTC TGAGTCTTGA 8368 .......... .......... .......... .......... .......... .......... 170 AGAATTTGAG ATAGCAGGAG AGATAAAACC ACTAAAATTA TTTCCTCCGC AGATGAGTAC 8428 .......... .......... .......... .......... .......... .......... 170 TTCTATATTG GGCATTGCAC AACCTAAATC TGATGGTAGA GTACCTGAAA GTTTGTTATG 8488 .......... .......... .......... .......... .......... .......... 170 TGCAATATCT AGGACCAGCA GTGATGACAT GTTGAAAATA TTTGCAGGGA CAGAACCACT 8548 .......... .......... .......... .......... .......... .......... 170 AAATCGACTA TCTGATAATC CTAGTGCTTG TAGTTTCTTC AGATTACCGA GCTCCACTGG 8608 .......... .......... .......... .......... .......... .......... 170 TATCTCTCCT GTCATTGATT TTAGGTAAAT ATATGAGTTA CCACTTTTGC AGAAGAACAT 8668 .......... .......... .......... .......... .......... .......... 170 TTTCGTTTTT CTAGTAAGAA ATTGTTGTAT TACCTTCCAA ATGAAGACTT CCGATATATA 8728 .......... .......... .......... .......... .......... .......... 170 ATATTGTAAG AGCTGTTAAG TTGGCTAGCT CTCTTGGTAC AGTTCCAGTA AACTCATTGT 8788 .......... .......... .......... .......... .......... .......... 170 AATTCAATGA CAAGACTTGA AGTTTTCTGC ATTTTTCTAT GTTTGGTGGA ATAACACCCC 8848 .......... .......... .......... .......... .......... .......... 170 CGAGGTAGTT TTTTGAGAGG TAAAGCCCTT CCAAATTTGG AAGATGGTCG CATATAGTTG 8908 .......... .......... .......... .......... .......... .......... 170 TTGGAAGCTG ATCAGTGAGA TTGTTATAGG TAAGACCAAT GTTTTTCATA GTTGTAATGT 8968 .......... .......... .......... .......... .......... .......... 170 TGAAGATTGA TACTGGTATA GAGCCACTAA GTTCATTAAA TTGCAGATCT AAAATTGTCA 9028 .......... .......... .......... .......... .......... .......... 170 GGTAGCAAAG ATCACCGAGT TCTCGAGGGA TCTCTCCTTG TAGAAAATTC TTTTGCATAC 9088 .......... .......... .......... .......... .......... .......... 170 TCAACACTTC CATCTTTGTT ATGTTGGAAA TGAAAGAAGG AATTTCTCCT GAAAATTGAT 9148 .......... .......... .......... .......... .......... .......... 170 TCATCGAAAG GTAAGCAACC CGTAGATTCG GTAACAAACT TAAAGATGAT AAAATGGCTC 9208 .......... .......... .......... .......... .......... .......... 170 CAGTGAAGTT ATTATTTGTG ACACTTATAA ATTTCAGCCT CTGCAAACGA GCCAGCTCTA 9268 .......... .......... .......... .......... .......... .......... 170 CTGGTAGATC TCCATAGAGA GCATTGTAAC TTATGTTGAG GGAAACAAGA AATGAGAGAT 9328 .......... .......... .......... .......... .......... .......... 170 TTCCAAGGCA TGGAGAAATG GTACCACGAA GTTGCATGCT AGATATGTTT AAAGCGGTGA 9388 .......... .......... .......... .......... .......... .......... 170 CTCGGTGGTG GCGGGAGCTA CAAGTGATTC CAATCCAGCT GCAAACCGGG CTGGAAGAAA 9448 .......... .......... .......... .......... .......... .......... 170 ATTTCAGTGC AAGAAGAGCG GCTTCATCGG TGGAAATATT AGCAAGTGAA GAAGTATGGC 9508 .......... .......... .......... .......... .......... .......... 170 GATAAAGCGT AATGAAAACT GCAAGAGAAA ACAGAAGATT GCAAGTTCTT CCCATAGCTA 9568 ||| | | ||| || .......... .......... .......... .......... .....TTC-T CAAATA-CTT 183 TAACAAGAGT ACTTGATAGT AATGATCTTA GAAGATATAT TTAAAGATTA ATGTATACCT 9628 |||| || TAACTAG-.. .......... .......... .......... .......... .......... 190 ATATACTGTT TTTAGATTGG AATGACTTTT AGTCAATGGG GTCAATTTAA TTAGTTGGAT 9688 .......... .......... .......... .......... .......... .......... 190 AAAACAACTA GTTAAACTTT GTAAAAAGTT TGGGTTGTTA AATTGTTTTA ACATAGTTTT 9748 .......... .......... .......... .......... .......... .......... 190 TTATCCTTCA CCTTTGAACT TTATCTTGTC AAGACTTGTC TTGGCTTGAC TAACAATTAA 9808 .......... .......... .......... .......... .......... .......... 190 CATGATCTTT TTCTCCACTT AACTAACAAA TAAAGTTGTT AACCTGTATT CATCTTCAAC 9868 .......... .......... .......... .......... .......... .......... 190 TAGAGATTCT GATTTCTGTG TTCGAATCCT AAAATGAGTT CGCTCACTCC CTGATGCGCT 9928 .......... .......... .......... .......... .......... .......... 190 CAAAGTTGTT GTATCACCAG TAACAGATGA TGAACTTATT GTTAGGATTT TAAGAGAAAT 9988 .......... .......... .......... .......... .......... .......... 190 GGGATTCTTC TTTGAGTTTT GAAGAGTTGT TTCACAAGTT CACAGATCAT GAGCTTTTTC 10048 .......... .......... .......... .......... .......... .......... 190 TCAAGCACAA ATCATGGAAT CATCGACAAA AGTGATAAAT AACCTATCGA AACAACAGGA 10108 .......... .......... .......... .......... .......... .......... 190 CATGGTCCAC AAATATCTGA ATGAACTAAC TCAAAATGTC GATTCAACTA TAATAAACTT 10168 .......... .......... .......... .......... .......... .......... 190 TATCGATCAT TTCATAACTC TGAGGTCTTG CATTTGTGTA CCCTCTTCTT CCCTCAATTG 10228 .......... .......... .......... .......... .......... .......... 190 ATTCATAACT CTCCAAAGAG CAACGCTTCC CTGAGTAGGC ACACATTTCT AGTGGCCTTA 10288 .......... .......... .......... .......... .......... .......... 190 GATCATGTTC AAAATTGATA CGCTACTCTC TATTCAAAAA GTGTCTGTAT ATTATATGCA 10348 .......... .......... .......... .......... .......... .......... 190 CATAAAATAC TAGTATTTCT TAAAGATAAT GTGTTTTATG TACCCCTTTT TTCATTTTAA 10408 .......... .......... .......... .......... .......... .......... 190 GGGGGTAAGG TAAATTTTTT TTTTTTTTTG TTTTATTCAG ATTATTCATA TCTTTGGAAT 10468 |||| .......... .......... .......... .......... GCTATTT... .......... 197 TTGACAAAAT GTATTCAAAT TTTCTCCCCA ATATTGGAGG CCATTTCTCT TTCCTAACTT 10528 .......... .......... .......... .......... .......... .......... 197 ACTCCCATTG TTCTAAAATA TTTGTCACAA TTTTTTTTTT GGAGAATTAA ACGATATAAA 10588 .......... .......... .......... .......... .......... .......... 197 TTTTGATCGA TATTTTAAGA TTATAATTGA TATGAGAAAA AAATATAGTT TGTAGTATCC 10648 .......... .......... .......... .......... .......... .......... 197 TACGTGTAAT ATTGTGTTCA TTTATTCAAT TTTATACAAA TTTAAATGTT TGTTTGTATG 10708 .......... .......... .......... .......... .......... .......... 197 TGTACACCAA AATTTGAAGG GCATAAATTG ACAGCTAAAG CAAAGTTAAG AACACACTTA 10768 .......... .......... .......... .......... .......... .......... 197 TTCACTTTCC TATTGAATCA TTGAAT-TCT CATAATTTGT TCCCTTTAAA CAAACACCGT 10827 ||| |||| ||| | |||||| | |||||||| | ||||| || ||||||| .......TCC TATTAAATTA TTGAATCACC CATAATTTTG TTCCTTTTAA ---ACACCGT 247 TGTCTGATGT GGAACCAGAT -TTATGAGGG GTATTGATAG AGGATACATA TGTTGTTCCA 10886 || ||||| || | ||||| || | |||| |||||| ||| | || |||| |||||||| | TGATCGATGT GG-ATCAGAT TTTGTTAGGG GTATTGGTAG A-TATGCATA TGTTGTTCTA 305 CAACTCATTA GTCCAATTGA TAGTGAAAAT GTTCGAGAAT AATTGTGTTT TACT-TAAGT 10945 ||||||||| | |||||||| |||||||| | |||||||||| |||||| || |||| || | GAACTCATTA GACCAATTGA TAGTGAAATT GTTCGAGAAT AATTGT-ATT TACTCGAAAT 364 CATTTGAAAA CATTAGAAAA CAAATGAGAC TAAC--ACGG TTTGTTTTCA TTCCTTCAAT 11003 |||||||| | |||||||||| |||||||||| |||| || ||||| |||| || ||||||| CATTTGAACA CATTAGAAAA CAAATGAGAC TAACAAACAA TTTGTCTTCA TTTCTTCAAT 424 CAAAATTATT ACGATTCGAA CACAATTAAA AGCATTTACA ATAGAAAAGC TGATCAAAA 11062 |||||||||| || || | || |||| || || |||||||| |||| ||| | ||||||| CAAAATTATT ACAATACAAA CACAGTTGAA TACATTTACA ATAGGAAAAA TAATCAAAA 483 hqPGS_C06HBa0054K13.1-3+_SGN-E347070- (10776 11062) ******************************************************************************** EST sequence 3 -strand 742 n (File: SGN-E543212-) 1 AGGGGTATTG ATAGAAGATA CATATGTTGT TCCTGAACTC ATTAGTCCAA TTGATAGTGA 61 AAATGTTCGA GAATAATTGT GTTTCACTTA AGTGATTTGA AGACATTAGA AAACAAATGA 121 GATTAACACG GTTTGTGTTC ATTCGTTCAA TCAAAATTAT TACAATTCGA ACACAATTGG 181 AGACATTTAC AATAGAAAAG TCGATCAAAA TCAACCAACA GTATTTTAAA GGAATAAATT 241 ATGGGTGGTT TAATGATGAG GAAAAAAATC CAACTAATTT AAGGATCTGT TTATGTATTT 301 GACCTTAATA TATATATATA TGTTATTAAT GAGCGTAGGC ATGGAGTAAT GGAAGAATAT 361 ATTCACCAAG ACACCAAGTG TTGATGAAAG AGGATAAGCA AAGGTATACA TTGGCGTTAT 421 TCACATTCAA TAAAGGAATA ACAGATATAC CTGAGGAATT GGTGGATGAA ACACATCCTT 481 TACAATACAA GCCTTTTGAT AATTTTGATT TAGTTATGTA CTACAGTACT GGTGCTAGCC 541 CCATGGCTTA TGGCACTGCT AAACCTTACT GTGGTATTAA TGCTCAATAG ATACCTATTT 601 TATTATAAAT AATATGAGTT CAAACTAGTT TTACGATGAA CTCTATGTGT AATTTCAACT 661 ATCTATTTCA AATTCAATAT AATATAAGAT TGTTACATTT ATGAAAAAAA AAAAAAAAAA 721 AAAAGAAAAA AAAAAACTCG AG Predicted gene structure (within gDNA segment 10099 to 11062): Exon 1 10853 11062 ( 210 n); cDNA 1 210 ( 210 n); score: 0.924 PPA cDNA 704 736 MATCH C06HBa0054K13.1-3+ SGN-E543212- 0.924 210 0.283 C PGS_C06HBa0054K13.1-3+_SGN-E543212- (10853 11062) Alignment (genomic DNA sequence = upper lines): AGGGGTATTG ATAGAGGATA CATATGTTGT TCCACAACTC ATTAGTCCAA TTGATAGTGA 10912 |||||||||| ||||| |||| |||||||||| ||| ||||| |||||||||| |||||||||| AGGGGTATTG ATAGAAGATA CATATGTTGT TCCTGAACTC ATTAGTCCAA TTGATAGTGA 60 AAATGTTCGA GAATAATTGT GTTTTACTTA AGTCATTTGA AAACATTAGA AAACAAATGA 10972 |||||||||| |||||||||| |||| ||||| ||| |||||| | |||||||| |||||||||| AAATGTTCGA GAATAATTGT GTTTCACTTA AGTGATTTGA AGACATTAGA AAACAAATGA 120 GACTAACACG GTTTGTTTTC ATTCCTTCAA TCAAAATTAT TACGATTCGA ACACAATTAA 11032 || ||||||| |||||| ||| |||| ||||| |||||||||| ||| |||||| |||||||| GATTAACACG GTTTGTGTTC ATTCGTTCAA TCAAAATTAT TACAATTCGA ACACAATTGG 180 AAGCATTTAC AATAGAAAAG CTGATCAAAA 11062 | ||||||| |||||||||| |||||||| AGACATTTAC AATAGAAAAG TCGATCAAAA 210 hqPGS_C06HBa0054K13.1-3+_SGN-E543212- (10853 11062) Total number of EST alignments reported: 4 ________________________________________________________________________________ Predicted gene locations (1) in segment 1 to 11062: PGL 1 (+ strand): 10774 11062 AGS-1 (10774 11062) SCR (e 0.910) Exon 1 10774 11062 ( 289 n); score: 0.910 PGS (10774 11062) SGN-E303971+ PGS (10774 11062) SGN-E548841+ PGS (10776 11062) SGN-E347070- PGS (10853 11062) SGN-E543212- 3-phase translation of AGS-1 (+strand): . . . . . . 10774 TTTCCTATTGAATCATTGAATTCTCATAATTTGTTCCCTTTAAACAAACACCGTTGTCTG F P I E S L N S H N L F P L N K H R C L F L L N H - I L I I C S L - T N T V V - S Y - I I E F S - F V P F K Q T P L S . . . . . . 10834 ATGTGGAACCAGATTTATGAGGGGTATTGATAGAGGATACATATGTTGTTCCACAACTCA M W N Q I Y E G Y - - R I H M L F H N S C G T R F M R G I D R G Y I C C S T T H D V E P D L - G V L I E D T Y V V P Q L . . . . . . 10894 TTAGTCCAATTGATAGTGAAAATGTTCGAGAATAATTGTGTTTTACTTAAGTCATTTGAA L V Q L I V K M F E N N C V L L K S F E - S N - - - K C S R I I V F Y L S H L K I S P I D S E N V R E - L C F T - V I - . . . . . . 10954 AACATTAGAAAACAAATGAGACTAACACGGTTTGTTTTCATTCCTTCAATCAAAATTATT N I R K Q M R L T R F V F I P S I K I I T L E N K - D - H G L F S F L Q S K L L K H - K T N E T N T V C F H S F N Q N Y . . . . . 11014 ACGATTCGAACACAATTAAAAGCATTTACAATAGAAAAGCTGATCAAAA T I R T Q L K A F T I E K L I K R F E H N - K H L Q - K S - S K Y D S N T I K S I Y N R K A D Q Maximal non-overlapping open reading frames (>= 64 codons): >C06HBa0054K13.1-3+_PGL-1_AGS-1_PPS_1 (10867 11061) (frame '1'; 195 bp, 65 residues) 1 RIHMLFHNSL VQLIVKMFEN NCVLLKSFEN IRKQMRLTRF VFIPSIKIIT IRTQLKAFTI 61 EKLIK 3-phase translation of AGS-1 (-strand): . . . . . . 11062 TTTTGATCAGCTTTTCTATTGTAAATGCTTTTAATTGTGTTCGAATCGTAATAATTTTGA F - S A F L L - M L L I V F E S - - F - F D Q L F Y C K C F - L C S N R N N F D L I S F S I V N A F N C V R I V I I L . . . . . . 11002 TTGAAGGAATGAAAACAAACCGTGTTAGTCTCATTTGTTTTCTAATGTTTTCAAATGACT L K E - K Q T V L V S F V F - C F Q M T - R N E N K P C - S H L F S N V F K - L I E G M K T N R V S L I C F L M F S N D . . . . . . 10942 TAAGTAAAACACAATTATTCTCGAACATTTTCACTATCAATTGGACTAATGAGTTGTGGA - V K H N Y S R T F S L S I G L M S C G K - N T I I L E H F H Y Q L D - - V V E L S K T Q L F S N I F T I N W T N E L W . . . . . . 10882 ACAACATATGTATCCTCTATCAATACCCCTCATAAATCTGGTTCCACATCAGACAACGGT T T Y V S S I N T P H K S G S T S D N G Q H M Y P L S I P L I N L V P H Q T T V N N I C I L Y Q Y P S - I W F H I R Q R . . . . . 10822 GTTTGTTTAAAGGGAACAAATTATGAGAATTCAATGATTCAATAGGAAA V C L K G T N Y E N S M I Q - E F V - R E Q I M R I Q - F N R K C L F K G N K L - E F N D S I G Maximal non-overlapping open reading frames (>= 64 codons): >C06HBa0054K13.1-3-_PGL-1_AGS-1_PPS_1 (11060 10848) (frame '0'; 210 bp, 70 residues) 1 LISFSIVNAF NCVRIVIILI EGMKTNRVSL ICFLMFSNDL SKTQLFSNIF TINWTNELWN 61 NICILYQYPS - ... finished at: Mon Aug 28 22:09:49 2006 ________________________________________________________________________________ Sequence 4: C06HBa0054K13.1-4, from 1 to 14213, both strands analyzed. ... started at: Mon Aug 28 22:09:49 2006 EST library file: /tmp/cxgn-bacpublish-resources-LF1h7Z/sgn_ests; matching gDNA +strand ... ... found all matches, elapsed seconds = 3 ... matches indexed, elapsed seconds = 3 HitsTableSize = 27 EST library file: /tmp/cxgn-bacpublish-resources-LF1h7Z/sgn_ests; matching gDNA -strand ... ... found all matches, elapsed seconds = 4 ... matches indexed, elapsed seconds = 4 HitsTableSize = 19 ******************************************************************************** EST sequence 31 +strand 772 n (File: SGN-E261649+) 1 ACACCATAGT GGTCTTGTTT GGTGATTCTA CAGAGACTTC TTTGAGGCTC ATTTTAGACT 61 CAACTAATGA AGTTCTAGAC ATTCTTGGAC TTGGACTTTC ACCTATTTGT TCCTCCCTGT 121 CAAAGTTCAA CAGAGGGCCT TGACCTGTTG AGGACTTTGG TTTGAGTACG GACTTTGGTG 181 ATGATGAACA ACTCGAGGCT GTAGGGACTT CTCGGATTAA AGATTGTAAG CTGATCAAGT 241 CTTGATTGAC AGAGCTCTCC GATGGAATTC CAGAAGTCGA GGAGCCTTCA CTTGCTGAGA 301 ACTTTGGTTG AATCATAGTG TTGGGAGAGG GGGATGAAGT AGAGGCCCTC GGAACTTGTT 361 CAACCACCAA ATCATGTGGT GATGATGATG ATGATGCTTG TGAACCATCA ATACTCTGGC 421 TAATTGTAGA AAAAACTTCT TCAATAGGCT GTTTACCACC ATTATCGTGA AGTGCTTCAT 481 GAATTTCATT CCTAGGGAGA GACTTTGAAT TTTCTGCAGA CTTCTGTGTC TTCGGATGTG 541 GTACTGAACT TTGCACTGTC GGATTTCTTA ACGTAAGTTT TGAGCTCCGA GTACTGGTTG 601 GATCACAACT TTCAGCAGTT ACTTCATCTG TCAGCTTATT TTTTAGTTTG CGCCTATCTA 661 CTTGTTGAGC CTCCAAATTT GAACTAGATC CTTTATCAAT GGAAAATGTT GGTTGCGAAA 721 CAGACTTAGA CGATGATGTA CTAGAAGAGG CTTCCAATGA GTGATGTCCT TG Predicted gene structure (within gDNA segment 2504 to 1): Exon 1 1904 1848 ( 57 n); cDNA 1 57 ( 57 n); score: 1.000 Intron 1 1847 1349 ( 499 n); Pd: 0.999 (s: 1.00), Pa: 0.909 (s: 1.00) Exon 2 1348 1133 ( 216 n); cDNA 58 273 ( 216 n); score: 1.000 Intron 2 1132 599 ( 534 n); Pd: 0.898 (s: 1.00), Pa: 0.983 (s: 1.00) Exon 3 598 100 ( 499 n); cDNA 274 772 ( 499 n); score: 0.998 MATCH C06HBa0054K13.1-4- SGN-E261649+ 0.999 772 1.000 C PGS_C06HBa0054K13.1-4-_SGN-E261649+ (1904 1848,1348 1133,598 100) Alignment (genomic DNA sequence = upper lines): ACACCATAGT GGTCTTGTTT GGTGATTCTA CAGAGACTTC TTTGAGGCTC ATTTTAGGTA 1845 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||| ACACCATAGT GGTCTTGTTT GGTGATTCTA CAGAGACTTC TTTGAGGCTC ATTTTAG... 57 AGTCCTCCTT CTTGACATCA TTGTGATTAG TGGCTTCTTC ATGAAACTTC TCTTCATCAT 1785 .......... .......... .......... .......... .......... .......... 57 TGGATGGTTT CTGTATAACG TTGCAATCAA AGACAAAGTA TGAATTTCGT TAAGGATGTT 1725 .......... .......... .......... .......... .......... .......... 57 CTAGATTCAA CATACACGTA TAGTTTATTA TATATGCGGT TTATTTTTCC TGGCAAAGGA 1665 .......... .......... .......... .......... .......... .......... 57 TGTTCAACTA ACCACCGTTG AGCCTATGTG ACTCCGTATT ACATTATTTT CACAAGCACA 1605 .......... .......... .......... .......... .......... .......... 57 AAAATATGAT ATAATGAATG TAACAAGAAA AGACCATCTA TTTATGCTGT TTCAAAGAGA 1545 .......... .......... .......... .......... .......... .......... 57 GGGTAAGTTT TATGTACTGA TAAGTGCGAA AATAGGAGAA CCTATTCTCT AAAGGGTGGT 1485 .......... .......... .......... .......... .......... .......... 57 TTGGTTTATC ATACTAACAA AAATAATCCT ACCATACTGT CAGTATATAT AACTTAAGTA 1425 .......... .......... .......... .......... .......... .......... 57 ATTGAAGGTA TCATTTGATC CAGTCTATAT AAACGTACCG TTTTAGCATC TGTATGATGA 1365 .......... .......... .......... .......... .......... .......... 57 AGTTGGTCTG ATGCAGACTC AACTAATGAA GTTCTAGACA TTCTTGGACT TGGACTTTCA 1305 |||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ......ACTC AACTAATGAA GTTCTAGACA TTCTTGGACT TGGACTTTCA 101 CCTATTTGTT CCTCCCTGTC AAAGTTCAAC AGAGGGCCTT GACCTGTTGA GGACTTTGGT 1245 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCTATTTGTT CCTCCCTGTC AAAGTTCAAC AGAGGGCCTT GACCTGTTGA GGACTTTGGT 161 TTGAGTACGG ACTTTGGTGA TGATGAACAA CTCGAGGCTG TAGGGACTTC TCGGATTAAA 1185 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGAGTACGG ACTTTGGTGA TGATGAACAA CTCGAGGCTG TAGGGACTTC TCGGATTAAA 221 GATTGTAAGC TGATCAAGTC TTGATTGACA GAGCTCTCCG ATGGAATTCC AGGTATCGGA 1125 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| || GATTGTAAGC TGATCAAGTC TTGATTGACA GAGCTCTCCG ATGGAATTCC AG........ 273 TCCTAAGTTA CATTAAAAAG AAAAAACAAT ACTTGAAATT TCAAACACTT CTATAAGTGA 1065 .......... .......... .......... .......... .......... .......... 273 GAAACTGGAA AGAAAATGTT GTTTCTATTA GGTTTTGTTA TGCAGAACTT GAAAATGCAG 1005 .......... .......... .......... .......... .......... .......... 273 GTGCAATTAC ATTTTCCTGT CTGCCAAAAA CACTGCTTTA CTGACACATT ATAATTTTAT 945 .......... .......... .......... .......... .......... .......... 273 TACAAACTTA TGATACACAT TCATTATTTT TAACTATACA CGATTATACA TCTTTTCTGC 885 .......... .......... .......... .......... .......... .......... 273 CTTTAACAAG TCGATACACA ACTAAACTTC ACAAAAAGTA TTGTTTGCAT GCTGGATTTC 825 .......... .......... .......... .......... .......... .......... 273 AACTTATATC AATTAATTTA ACATGGAGTT GATTTCTTAT ATGGTCACTT GGATCGTAGT 765 .......... .......... .......... .......... .......... .......... 273 TATTATCTCA TAAAGTCACT TTCTTTTTGT TGAAGAAAGG TTAATTTCTA AGATGATAAC 705 .......... .......... .......... .......... .......... .......... 273 TATTAGTTGA GTAACCATCA GAGAAATCAA CTCGTTTAAC TTGCATAATC TAATCATTGT 645 .......... .......... .......... .......... .......... .......... 273 CAAATTCATT AAAATCACCA AACCTGCATT CTTTTCTGTG TTTCAGAAGT CGAGGAGCCT 585 |||| |||||||||| .......... .......... .......... .......... ......AAGT CGAGGAGCCT 287 TCACTTGCTG AGAACTTTGG TTGAATCATA GTGTTGGGAG AGGGGGATGA AGTAGAGGCC 525 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCACTTGCTG AGAACTTTGG TTGAATCATA GTGTTGGGAG AGGGGGATGA AGTAGAGGCC 347 CTCGGAACTT GTTCAACCAC CAAATCATGT GGTGATGATG ATGATGATGC TTGTGAACCA 465 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCGGAACTT GTTCAACCAC CAAATCATGT GGTGATGATG ATGATGATGC TTGTGAACCA 407 TCAATACTCT GGCTAATTGT AGAAAAAACT TCTTCAATAG GCTGTTTACC ACCATTATCG 405 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCAATACTCT GGCTAATTGT AGAAAAAACT TCTTCAATAG GCTGTTTACC ACCATTATCG 467 TGAAGTGCTT CATGAATTTC ATTCCTAGGG AGAGACTTTG AATTTTCTGC AGACTTCTGT 345 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAAGTGCTT CATGAATTTC ATTCCTAGGG AGAGACTTTG AATTTTCTGC AGACTTCTGT 527 GTCTTCGGAT GTGGTACTGA ACTTTGCACT GTCGGATTTC TTAACGTAAG TTTTGAGCTC 285 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTCTTCGGAT GTGGTACTGA ACTTTGCACT GTCGGATTTC TTAACGTAAG TTTTGAGCTC 587 CGAGTACTGG TTGGATCACA ACTTTCAGCA GTTACTTCAT CTGTCAGCTT ATTTTTTAGT 225 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGAGTACTGG TTGGATCACA ACTTTCAGCA GTTACTTCAT CTGTCAGCTT ATTTTTTAGT 647 TTGCGCCTAT CTACTTGTTG AGCCTCCAAA TTTGAACTAG ATCCTTTATC AATGGAAAAT 165 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGCGCCTAT CTACTTGTTG AGCCTCCAAA TTTGAACTAG ATCCTTTATC AATGGAAAAT 707 GTTGGTTGCG AAACAGACTT AGACGATGAT GTACTAGAAG AGGCTTCAAA TGAGTGATGT 105 |||||||||| |||||||||| |||||||||| |||||||||| ||||||| || |||||||||| GTTGGTTGCG AAACAGACTT AGACGATGAT GTACTAGAAG AGGCTTCCAA TGAGTGATGT 767 CCTTG 100 ||||| CCTTG 772 hqPGS_C06HBa0054K13.1-4-_SGN-E261649+ (1904 1848,1348 1133,598 100) ******************************************************************************** EST sequence 30 +strand 641 n (File: SGN-E251964+) 1 TGGTGTTGGA AGACACCATA GTGGTCTTGT TTGGTGATTC TACAGAGACT TCTTTGAGGC 61 TCATTTTAGA CTCAACTAAT GAAGTTCTAG ACATTCTTGG ACTTGGACTT TCACCTATTT 121 GTTCCTCCCT GTCAAAGTTC AACAGAGGGC CTTGACCTGT TGAGGACTTT GGTTTGAGTA 181 CGGACTTTGG TGATGATGAA CAACTCGAGG CTGTAGGGAC TTCTCGGATT AAAGATTGTA 241 AGCTGATCAA GTCTTGATTG ACAGAGCTCT CCGATGGAAT TCCAGAAGTC GAGGAGCCTT 301 CACTTGCTGA GAACTTTGGT TGAATCATAG TGTTGGGAGA GGGGGATGAA GTAGAGGCCC 361 TCGGAACTTG TTCAACCACC AAATCATGTG GTGATGATGA TGATGATGCT TGTGAACCAT 421 CAATACTCTG GCTAATTGTA GAAAAAACTT CTTCAATAGG CTGTTTACCA CCATTATCGT 481 GAAGTGCTTC ATGAATTTCA TTCCTAGGGA GAGACTTTGA ATTTTCTGCA GACTTCTGTG 541 TCTTCGGATG TGGTACTGAA CTTTGCACTG TCGGATTTCT TAACGTAAGT TTTGAGCTCC 601 GAGTACTGGT TGGATCACAA CTTTCAGCAG TTACTTCATC T Predicted gene structure (within gDNA segment 2516 to 1): Exon 1 1916 1848 ( 69 n); cDNA 1 69 ( 69 n); score: 1.000 Intron 1 1847 1349 ( 499 n); Pd: 0.999 (s: 1.00), Pa: 0.909 (s: 1.00) Exon 2 1348 1133 ( 216 n); cDNA 70 285 ( 216 n); score: 1.000 Intron 2 1132 599 ( 534 n); Pd: 0.898 (s: 1.00), Pa: 0.983 (s: 1.00) Exon 3 598 243 ( 356 n); cDNA 286 641 ( 356 n); score: 1.000 MATCH C06HBa0054K13.1-4- SGN-E251964+ 1.000 641 1.000 C PGS_C06HBa0054K13.1-4-_SGN-E251964+ (1916 1848,1348 1133,598 243) Alignment (genomic DNA sequence = upper lines): TGGTGTTGGA AGACACCATA GTGGTCTTGT TTGGTGATTC TACAGAGACT TCTTTGAGGC 1857 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGTGTTGGA AGACACCATA GTGGTCTTGT TTGGTGATTC TACAGAGACT TCTTTGAGGC 60 TCATTTTAGG TAAGTCCTCC TTCTTGACAT CATTGTGATT AGTGGCTTCT TCATGAAACT 1797 ||||||||| TCATTTTAG. .......... .......... .......... .......... .......... 69 TCTCTTCATC ATTGGATGGT TTCTGTATAA CGTTGCAATC AAAGACAAAG TATGAATTTC 1737 .......... .......... .......... .......... .......... .......... 69 GTTAAGGATG TTCTAGATTC AACATACACG TATAGTTTAT TATATATGCG GTTTATTTTT 1677 .......... .......... .......... .......... .......... .......... 69 CCTGGCAAAG GATGTTCAAC TAACCACCGT TGAGCCTATG TGACTCCGTA TTACATTATT 1617 .......... .......... .......... .......... .......... .......... 69 TTCACAAGCA CAAAAATATG ATATAATGAA TGTAACAAGA AAAGACCATC TATTTATGCT 1557 .......... .......... .......... .......... .......... .......... 69 GTTTCAAAGA GAGGGTAAGT TTTATGTACT GATAAGTGCG AAAATAGGAG AACCTATTCT 1497 .......... .......... .......... .......... .......... .......... 69 CTAAAGGGTG GTTTGGTTTA TCATACTAAC AAAAATAATC CTACCATACT GTCAGTATAT 1437 .......... .......... .......... .......... .......... .......... 69 ATAACTTAAG TAATTGAAGG TATCATTTGA TCCAGTCTAT ATAAACGTAC CGTTTTAGCA 1377 .......... .......... .......... .......... .......... .......... 69 TCTGTATGAT GAAGTTGGTC TGATGCAGAC TCAACTAATG AAGTTCTAGA CATTCTTGGA 1317 || |||||||||| |||||||||| |||||||||| .......... .......... ........AC TCAACTAATG AAGTTCTAGA CATTCTTGGA 101 CTTGGACTTT CACCTATTTG TTCCTCCCTG TCAAAGTTCA ACAGAGGGCC TTGACCTGTT 1257 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTGGACTTT CACCTATTTG TTCCTCCCTG TCAAAGTTCA ACAGAGGGCC TTGACCTGTT 161 GAGGACTTTG GTTTGAGTAC GGACTTTGGT GATGATGAAC AACTCGAGGC TGTAGGGACT 1197 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGGACTTTG GTTTGAGTAC GGACTTTGGT GATGATGAAC AACTCGAGGC TGTAGGGACT 221 TCTCGGATTA AAGATTGTAA GCTGATCAAG TCTTGATTGA CAGAGCTCTC CGATGGAATT 1137 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTCGGATTA AAGATTGTAA GCTGATCAAG TCTTGATTGA CAGAGCTCTC CGATGGAATT 281 CCAGGTATCG GATCCTAAGT TACATTAAAA AGAAAAAACA ATACTTGAAA TTTCAAACAC 1077 |||| CCAG...... .......... .......... .......... .......... .......... 285 TTCTATAAGT GAGAAACTGG AAAGAAAATG TTGTTTCTAT TAGGTTTTGT TATGCAGAAC 1017 .......... .......... .......... .......... .......... .......... 285 TTGAAAATGC AGGTGCAATT ACATTTTCCT GTCTGCCAAA AACACTGCTT TACTGACACA 957 .......... .......... .......... .......... .......... .......... 285 TTATAATTTT ATTACAAACT TATGATACAC ATTCATTATT TTTAACTATA CACGATTATA 897 .......... .......... .......... .......... .......... .......... 285 CATCTTTTCT GCCTTTAACA AGTCGATACA CAACTAAACT TCACAAAAAG TATTGTTTGC 837 .......... .......... .......... .......... .......... .......... 285 ATGCTGGATT TCAACTTATA TCAATTAATT TAACATGGAG TTGATTTCTT ATATGGTCAC 777 .......... .......... .......... .......... .......... .......... 285 TTGGATCGTA GTTATTATCT CATAAAGTCA CTTTCTTTTT GTTGAAGAAA GGTTAATTTC 717 .......... .......... .......... .......... .......... .......... 285 TAAGATGATA ACTATTAGTT GAGTAACCAT CAGAGAAATC AACTCGTTTA ACTTGCATAA 657 .......... .......... .......... .......... .......... .......... 285 TCTAATCATT GTCAAATTCA TTAAAATCAC CAAACCTGCA TTCTTTTCTG TGTTTCAGAA 597 || .......... .......... .......... .......... .......... ........AA 287 GTCGAGGAGC CTTCACTTGC TGAGAACTTT GGTTGAATCA TAGTGTTGGG AGAGGGGGAT 537 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTCGAGGAGC CTTCACTTGC TGAGAACTTT GGTTGAATCA TAGTGTTGGG AGAGGGGGAT 347 GAAGTAGAGG CCCTCGGAAC TTGTTCAACC ACCAAATCAT GTGGTGATGA TGATGATGAT 477 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAGTAGAGG CCCTCGGAAC TTGTTCAACC ACCAAATCAT GTGGTGATGA TGATGATGAT 407 GCTTGTGAAC CATCAATACT CTGGCTAATT GTAGAAAAAA CTTCTTCAAT AGGCTGTTTA 417 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTTGTGAAC CATCAATACT CTGGCTAATT GTAGAAAAAA CTTCTTCAAT AGGCTGTTTA 467 CCACCATTAT CGTGAAGTGC TTCATGAATT TCATTCCTAG GGAGAGACTT TGAATTTTCT 357 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCACCATTAT CGTGAAGTGC TTCATGAATT TCATTCCTAG GGAGAGACTT TGAATTTTCT 527 GCAGACTTCT GTGTCTTCGG ATGTGGTACT GAACTTTGCA CTGTCGGATT TCTTAACGTA 297 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCAGACTTCT GTGTCTTCGG ATGTGGTACT GAACTTTGCA CTGTCGGATT TCTTAACGTA 587 AGTTTTGAGC TCCGAGTACT GGTTGGATCA CAACTTTCAG CAGTTACTTC ATCT 243 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||| AGTTTTGAGC TCCGAGTACT GGTTGGATCA CAACTTTCAG CAGTTACTTC ATCT 641 hqPGS_C06HBa0054K13.1-4-_SGN-E251964+ (1916 1848,1348 1133,598 243) ******************************************************************************** EST sequence 42 +strand 638 n (File: SGN-E275937+) 1 TTGTTTGTTG TTGTTGGTGG TGTTGGAAGA CACCATAGTG GTCTTGTTTG GTGATTCTAC 61 AGAGACTTCT TTGAGGCTCA TTTTAGACTC AACTAATGAA GTTCTAGACA TTCTTGGACT 121 TGGACTTTCA CCTATTTGTT CCTCCCTGTC AAAGTTCAAC AGAGGGCCTT GACCTGTTGA 181 GGACTTTGGT TTGAGTACGG ACTTTGGTGA TGATGAACAA CTCGAGGCTG TAGGGACTTC 241 TCGGATTAAA GATTGTAAGC TGATCAAGTC TTGATTGACA GAGCTCTCCG ATGGAATTCC 301 AGAAGTCGAG GAGCCTTCAC TTGCTGAGAA CTTTGGTTGA ATCATACTGT TGGGAGAGGG 361 GGATGAAGTA AAGGCCCTCG GAACTTGTTC AACCACCAAA TCATGTGGTG ATGATGATGA 421 TGATGCTTGT GAACCATCAA TACTCTGGCT AATTGTAGAA AAAACTTCTT CAATAGGCTG 481 TTTACCACCA TTATCGTGAA GTGCTTCATG AATTTCATTC CTAGGGAGAG ACCTTGAATT 541 TTCTGCAGAC TTCTGTGTCT TCGGATGTGG TACTGAACTT TGCACTGTCG GATTTCTTAA 601 CGTAAGTTTT GAGCTCCGAG TACTGGTTGG ATCACAAC Predicted gene structure (within gDNA segment 2632 to 1): Exon 1 1933 1848 ( 86 n); cDNA 1 86 ( 86 n); score: 1.000 Intron 1 1847 1349 ( 499 n); Pd: 0.999 (s: 1.00), Pa: 0.909 (s: 1.00) Exon 2 1348 1133 ( 216 n); cDNA 87 302 ( 216 n); score: 1.000 Intron 2 1132 599 ( 534 n); Pd: 0.898 (s: 1.00), Pa: 0.983 (s: 0.98) Exon 3 598 263 ( 336 n); cDNA 303 638 ( 336 n); score: 0.991 MATCH C06HBa0054K13.1-4- SGN-E275937+ 0.995 638 1.000 C PGS_C06HBa0054K13.1-4-_SGN-E275937+ (1933 1848,1348 1133,598 263) Alignment (genomic DNA sequence = upper lines): TTGTTTGTTG TTGTTGGTGG TGTTGGAAGA CACCATAGTG GTCTTGTTTG GTGATTCTAC 1874 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGTTTGTTG TTGTTGGTGG TGTTGGAAGA CACCATAGTG GTCTTGTTTG GTGATTCTAC 60 AGAGACTTCT TTGAGGCTCA TTTTAGGTAA GTCCTCCTTC TTGACATCAT TGTGATTAGT 1814 |||||||||| |||||||||| |||||| AGAGACTTCT TTGAGGCTCA TTTTAG.... .......... .......... .......... 86 GGCTTCTTCA TGAAACTTCT CTTCATCATT GGATGGTTTC TGTATAACGT TGCAATCAAA 1754 .......... .......... .......... .......... .......... .......... 86 GACAAAGTAT GAATTTCGTT AAGGATGTTC TAGATTCAAC ATACACGTAT AGTTTATTAT 1694 .......... .......... .......... .......... .......... .......... 86 ATATGCGGTT TATTTTTCCT GGCAAAGGAT GTTCAACTAA CCACCGTTGA GCCTATGTGA 1634 .......... .......... .......... .......... .......... .......... 86 CTCCGTATTA CATTATTTTC ACAAGCACAA AAATATGATA TAATGAATGT AACAAGAAAA 1574 .......... .......... .......... .......... .......... .......... 86 GACCATCTAT TTATGCTGTT TCAAAGAGAG GGTAAGTTTT ATGTACTGAT AAGTGCGAAA 1514 .......... .......... .......... .......... .......... .......... 86 ATAGGAGAAC CTATTCTCTA AAGGGTGGTT TGGTTTATCA TACTAACAAA AATAATCCTA 1454 .......... .......... .......... .......... .......... .......... 86 CCATACTGTC AGTATATATA ACTTAAGTAA TTGAAGGTAT CATTTGATCC AGTCTATATA 1394 .......... .......... .......... .......... .......... .......... 86 AACGTACCGT TTTAGCATCT GTATGATGAA GTTGGTCTGA TGCAGACTCA ACTAATGAAG 1334 ||||| |||||||||| .......... .......... .......... .......... .....ACTCA ACTAATGAAG 101 TTCTAGACAT TCTTGGACTT GGACTTTCAC CTATTTGTTC CTCCCTGTCA AAGTTCAACA 1274 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCTAGACAT TCTTGGACTT GGACTTTCAC CTATTTGTTC CTCCCTGTCA AAGTTCAACA 161 GAGGGCCTTG ACCTGTTGAG GACTTTGGTT TGAGTACGGA CTTTGGTGAT GATGAACAAC 1214 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGGGCCTTG ACCTGTTGAG GACTTTGGTT TGAGTACGGA CTTTGGTGAT GATGAACAAC 221 TCGAGGCTGT AGGGACTTCT CGGATTAAAG ATTGTAAGCT GATCAAGTCT TGATTGACAG 1154 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCGAGGCTGT AGGGACTTCT CGGATTAAAG ATTGTAAGCT GATCAAGTCT TGATTGACAG 281 AGCTCTCCGA TGGAATTCCA GGTATCGGAT CCTAAGTTAC ATTAAAAAGA AAAAACAATA 1094 |||||||||| |||||||||| | AGCTCTCCGA TGGAATTCCA G......... .......... .......... .......... 302 CTTGAAATTT CAAACACTTC TATAAGTGAG AAACTGGAAA GAAAATGTTG TTTCTATTAG 1034 .......... .......... .......... .......... .......... .......... 302 GTTTTGTTAT GCAGAACTTG AAAATGCAGG TGCAATTACA TTTTCCTGTC TGCCAAAAAC 974 .......... .......... .......... .......... .......... .......... 302 ACTGCTTTAC TGACACATTA TAATTTTATT ACAAACTTAT GATACACATT CATTATTTTT 914 .......... .......... .......... .......... .......... .......... 302 AACTATACAC GATTATACAT CTTTTCTGCC TTTAACAAGT CGATACACAA CTAAACTTCA 854 .......... .......... .......... .......... .......... .......... 302 CAAAAAGTAT TGTTTGCATG CTGGATTTCA ACTTATATCA ATTAATTTAA CATGGAGTTG 794 .......... .......... .......... .......... .......... .......... 302 ATTTCTTATA TGGTCACTTG GATCGTAGTT ATTATCTCAT AAAGTCACTT TCTTTTTGTT 734 .......... .......... .......... .......... .......... .......... 302 GAAGAAAGGT TAATTTCTAA GATGATAACT ATTAGTTGAG TAACCATCAG AGAAATCAAC 674 .......... .......... .......... .......... .......... .......... 302 TCGTTTAACT TGCATAATCT AATCATTGTC AAATTCATTA AAATCACCAA ACCTGCATTC 614 .......... .......... .......... .......... .......... .......... 302 TTTTCTGTGT TTCAGAAGTC GAGGAGCCTT CACTTGCTGA GAACTTTGGT TGAATCATAG 554 ||||| |||||||||| |||||||||| |||||||||| ||||||||| .......... .....AAGTC GAGGAGCCTT CACTTGCTGA GAACTTTGGT TGAATCATAC 347 TGTTGGGAGA GGGGGATGAA GTAGAGGCCC TCGGAACTTG TTCAACCACC AAATCATGTG 494 |||||||||| |||||||||| ||| |||||| |||||||||| |||||||||| |||||||||| TGTTGGGAGA GGGGGATGAA GTAAAGGCCC TCGGAACTTG TTCAACCACC AAATCATGTG 407 GTGATGATGA TGATGATGCT TGTGAACCAT CAATACTCTG GCTAATTGTA GAAAAAACTT 434 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGATGATGA TGATGATGCT TGTGAACCAT CAATACTCTG GCTAATTGTA GAAAAAACTT 467 CTTCAATAGG CTGTTTACCA CCATTATCGT GAAGTGCTTC ATGAATTTCA TTCCTAGGGA 374 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTCAATAGG CTGTTTACCA CCATTATCGT GAAGTGCTTC ATGAATTTCA TTCCTAGGGA 527 GAGACTTTGA ATTTTCTGCA GACTTCTGTG TCTTCGGATG TGGTACTGAA CTTTGCACTG 314 ||||| |||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGACCTTGA ATTTTCTGCA GACTTCTGTG TCTTCGGATG TGGTACTGAA CTTTGCACTG 587 TCGGATTTCT TAACGTAAGT TTTGAGCTCC GAGTACTGGT TGGATCACAA C 263 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| | TCGGATTTCT TAACGTAAGT TTTGAGCTCC GAGTACTGGT TGGATCACAA C 638 hqPGS_C06HBa0054K13.1-4-_SGN-E275937+ (1933 1848,1348 1133,598 263) ******************************************************************************** EST sequence 32 +strand 599 n (File: SGN-E252920+) 1 ATTTCATTCT TGTCAGTTGA ACTGGAAGCA AAATTTGTAA CATCACTTGT CTTTTCTTGT 61 TTGTTGTTGT TGGTGGTGTT GGAAGACACC ATAGTGGTCT TGTTTGGTGA TTCTACAGAG 121 ACTTCTTTGA GGCTCATTTT AGACTCAACT AATGAAGTTC TAGACATTCT TGGACTTGGA 181 CTTTCACCTA TTTGTTCCTC CCTGTCAAAG TTCAACAGAG GGCCTTGACC TGTTGAGGAC 241 TTTGGTTTGA GTACGGACTT TGGTGATGAT GAACAACTCG AGGCTGTAGG GACTTCTCGG 301 ATTAAAGATT GTAAGCTGAT CAAGTCTTGA TTGACAGAGC TCTCCGATGG AATTCCAGAA 361 GTCGAGGAGC CTTCACTTGC TGAGAACTTT GGTTGAATCA TAGTGTTGGG AGAGGGGGAT 421 GAAGTAGAGG CCCTCGGAAC TTGTTCAACC ACCAAATCAT GTGGTGATGA TGATGATGAT 481 GCTTGTGAAC CATCAATACT CTGGCTAATT GTAGAAAAAA CTTCTTCAAT AGGCTGTCTA 541 CCACCATTAT CGTGAAGTGC TTCATGAATT TCATTCCTAG GGAGAGACTT TGAATTTTC Predicted gene structure (within gDNA segment 2589 to 1): Exon 1 1989 1848 ( 142 n); cDNA 1 142 ( 142 n); score: 1.000 Intron 1 1847 1349 ( 499 n); Pd: 0.999 (s: 1.00), Pa: 0.909 (s: 1.00) Exon 2 1348 1133 ( 216 n); cDNA 143 358 ( 216 n); score: 1.000 Intron 2 1132 599 ( 534 n); Pd: 0.898 (s: 1.00), Pa: 0.983 (s: 1.00) Exon 3 598 358 ( 241 n); cDNA 359 599 ( 241 n); score: 0.996 MATCH C06HBa0054K13.1-4- SGN-E252920+ 0.998 599 1.000 C PGS_C06HBa0054K13.1-4-_SGN-E252920+ (1989 1848,1348 1133,598 358) Alignment (genomic DNA sequence = upper lines): ATTTCATTCT TGTCAGTTGA ACTGGAAGCA AAATTTGTAA CATCACTTGT CTTTTCTTGT 1930 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTTCATTCT TGTCAGTTGA ACTGGAAGCA AAATTTGTAA CATCACTTGT CTTTTCTTGT 60 TTGTTGTTGT TGGTGGTGTT GGAAGACACC ATAGTGGTCT TGTTTGGTGA TTCTACAGAG 1870 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGTTGTTGT TGGTGGTGTT GGAAGACACC ATAGTGGTCT TGTTTGGTGA TTCTACAGAG 120 ACTTCTTTGA GGCTCATTTT AGGTAAGTCC TCCTTCTTGA CATCATTGTG ATTAGTGGCT 1810 |||||||||| |||||||||| || ACTTCTTTGA GGCTCATTTT AG........ .......... .......... .......... 142 TCTTCATGAA ACTTCTCTTC ATCATTGGAT GGTTTCTGTA TAACGTTGCA ATCAAAGACA 1750 .......... .......... .......... .......... .......... .......... 142 AAGTATGAAT TTCGTTAAGG ATGTTCTAGA TTCAACATAC ACGTATAGTT TATTATATAT 1690 .......... .......... .......... .......... .......... .......... 142 GCGGTTTATT TTTCCTGGCA AAGGATGTTC AACTAACCAC CGTTGAGCCT ATGTGACTCC 1630 .......... .......... .......... .......... .......... .......... 142 GTATTACATT ATTTTCACAA GCACAAAAAT ATGATATAAT GAATGTAACA AGAAAAGACC 1570 .......... .......... .......... .......... .......... .......... 142 ATCTATTTAT GCTGTTTCAA AGAGAGGGTA AGTTTTATGT ACTGATAAGT GCGAAAATAG 1510 .......... .......... .......... .......... .......... .......... 142 GAGAACCTAT TCTCTAAAGG GTGGTTTGGT TTATCATACT AACAAAAATA ATCCTACCAT 1450 .......... .......... .......... .......... .......... .......... 142 ACTGTCAGTA TATATAACTT AAGTAATTGA AGGTATCATT TGATCCAGTC TATATAAACG 1390 .......... .......... .......... .......... .......... .......... 142 TACCGTTTTA GCATCTGTAT GATGAAGTTG GTCTGATGCA GACTCAACTA ATGAAGTTCT 1330 ||||||||| |||||||||| .......... .......... .......... .......... .ACTCAACTA ATGAAGTTCT 161 AGACATTCTT GGACTTGGAC TTTCACCTAT TTGTTCCTCC CTGTCAAAGT TCAACAGAGG 1270 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGACATTCTT GGACTTGGAC TTTCACCTAT TTGTTCCTCC CTGTCAAAGT TCAACAGAGG 221 GCCTTGACCT GTTGAGGACT TTGGTTTGAG TACGGACTTT GGTGATGATG AACAACTCGA 1210 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCCTTGACCT GTTGAGGACT TTGGTTTGAG TACGGACTTT GGTGATGATG AACAACTCGA 281 GGCTGTAGGG ACTTCTCGGA TTAAAGATTG TAAGCTGATC AAGTCTTGAT TGACAGAGCT 1150 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGCTGTAGGG ACTTCTCGGA TTAAAGATTG TAAGCTGATC AAGTCTTGAT TGACAGAGCT 341 CTCCGATGGA ATTCCAGGTA TCGGATCCTA AGTTACATTA AAAAGAAAAA ACAATACTTG 1090 |||||||||| ||||||| CTCCGATGGA ATTCCAG... .......... .......... .......... .......... 358 AAATTTCAAA CACTTCTATA AGTGAGAAAC TGGAAAGAAA ATGTTGTTTC TATTAGGTTT 1030 .......... .......... .......... .......... .......... .......... 358 TGTTATGCAG AACTTGAAAA TGCAGGTGCA ATTACATTTT CCTGTCTGCC AAAAACACTG 970 .......... .......... .......... .......... .......... .......... 358 CTTTACTGAC ACATTATAAT TTTATTACAA ACTTATGATA CACATTCATT ATTTTTAACT 910 .......... .......... .......... .......... .......... .......... 358 ATACACGATT ATACATCTTT TCTGCCTTTA ACAAGTCGAT ACACAACTAA ACTTCACAAA 850 .......... .......... .......... .......... .......... .......... 358 AAGTATTGTT TGCATGCTGG ATTTCAACTT ATATCAATTA ATTTAACATG GAGTTGATTT 790 .......... .......... .......... .......... .......... .......... 358 CTTATATGGT CACTTGGATC GTAGTTATTA TCTCATAAAG TCACTTTCTT TTTGTTGAAG 730 .......... .......... .......... .......... .......... .......... 358 AAAGGTTAAT TTCTAAGATG ATAACTATTA GTTGAGTAAC CATCAGAGAA ATCAACTCGT 670 .......... .......... .......... .......... .......... .......... 358 TTAACTTGCA TAATCTAATC ATTGTCAAAT TCATTAAAAT CACCAAACCT GCATTCTTTT 610 .......... .......... .......... .......... .......... .......... 358 CTGTGTTTCA GAAGTCGAGG AGCCTTCACT TGCTGAGAAC TTTGGTTGAA TCATAGTGTT 550 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... .AAGTCGAGG AGCCTTCACT TGCTGAGAAC TTTGGTTGAA TCATAGTGTT 407 GGGAGAGGGG GATGAAGTAG AGGCCCTCGG AACTTGTTCA ACCACCAAAT CATGTGGTGA 490 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGGAGAGGGG GATGAAGTAG AGGCCCTCGG AACTTGTTCA ACCACCAAAT CATGTGGTGA 467 TGATGATGAT GATGCTTGTG AACCATCAAT ACTCTGGCTA ATTGTAGAAA AAACTTCTTC 430 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGATGATGAT GATGCTTGTG AACCATCAAT ACTCTGGCTA ATTGTAGAAA AAACTTCTTC 527 AATAGGCTGT TTACCACCAT TATCGTGAAG TGCTTCATGA ATTTCATTCC TAGGGAGAGA 370 |||||||||| ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATAGGCTGT CTACCACCAT TATCGTGAAG TGCTTCATGA ATTTCATTCC TAGGGAGAGA 587 CTTTGAATTT TC 358 |||||||||| || CTTTGAATTT TC 599 hqPGS_C06HBa0054K13.1-4-_SGN-E252920+ (1989 1848,1348 1133,598 358) ******************************************************************************** EST sequence 44 +strand 507 n (File: SGN-E256778+) 1 ACACCATAGT GGTCTTGTTT GGTGATTCTA CAGAGACTTC TTTGAGGCTC ATTTTAGACT 61 GGGCTAATGA AGTTCTAGAC ATTCTTGGAC TTGGACTTTC ACCTATTTGT TCCTCCCTGT 121 CAAAGTTCAA CAGAGGGCCT TGACCTGTTG AGGACTTTGG TTTGAGTACG GACTTTGGTG 181 ATGATGAACA ACTCGAGGCT GTAGGGACTT CTCGGATTAA AGATTGTAAG CTGATCAAGT 241 CTTGATTGAC AGAGCTCTCC GATGGAATTC CAGAAGTCGA GGAGCCTTCA CTTGCTGAGA 301 ACTTTGGTTG AATCATAGTG TTGGGAGAGG GGGATGAAGT AGAGGCCCTC GGAACTTGTT 361 CAACCACCAA ATCATGTGGT GATGATGATG ATGATGCTTG TGAACCATCA ATACTCTGGC 421 TAATTGTAGA AAAAACTTCT TCAATAGGCT GTTTACCACC ATTATCGTGA AGTGCTTCAT 481 GAATTTCATT CCTTAGGAGA GACTTTG Predicted gene structure (within gDNA segment 2504 to 1): Exon 1 1904 1848 ( 57 n); cDNA 1 57 ( 57 n); score: 1.000 Intron 1 1847 1349 ( 499 n); Pd: 0.999 (s: 1.00), Pa: 0.909 (s: 0.94) Exon 2 1348 1133 ( 216 n); cDNA 58 273 ( 216 n); score: 0.986 Intron 2 1132 599 ( 534 n); Pd: 0.898 (s: 1.00), Pa: 0.983 (s: 1.00) Exon 3 598 365 ( 234 n); cDNA 274 507 ( 234 n); score: 0.991 MATCH C06HBa0054K13.1-4- SGN-E256778+ 0.990 507 1.000 C PGS_C06HBa0054K13.1-4-_SGN-E256778+ (1904 1848,1348 1133,598 365) Alignment (genomic DNA sequence = upper lines): ACACCATAGT GGTCTTGTTT GGTGATTCTA CAGAGACTTC TTTGAGGCTC ATTTTAGGTA 1845 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||| ACACCATAGT GGTCTTGTTT GGTGATTCTA CAGAGACTTC TTTGAGGCTC ATTTTAG... 57 AGTCCTCCTT CTTGACATCA TTGTGATTAG TGGCTTCTTC ATGAAACTTC TCTTCATCAT 1785 .......... .......... .......... .......... .......... .......... 57 TGGATGGTTT CTGTATAACG TTGCAATCAA AGACAAAGTA TGAATTTCGT TAAGGATGTT 1725 .......... .......... .......... .......... .......... .......... 57 CTAGATTCAA CATACACGTA TAGTTTATTA TATATGCGGT TTATTTTTCC TGGCAAAGGA 1665 .......... .......... .......... .......... .......... .......... 57 TGTTCAACTA ACCACCGTTG AGCCTATGTG ACTCCGTATT ACATTATTTT CACAAGCACA 1605 .......... .......... .......... .......... .......... .......... 57 AAAATATGAT ATAATGAATG TAACAAGAAA AGACCATCTA TTTATGCTGT TTCAAAGAGA 1545 .......... .......... .......... .......... .......... .......... 57 GGGTAAGTTT TATGTACTGA TAAGTGCGAA AATAGGAGAA CCTATTCTCT AAAGGGTGGT 1485 .......... .......... .......... .......... .......... .......... 57 TTGGTTTATC ATACTAACAA AAATAATCCT ACCATACTGT CAGTATATAT AACTTAAGTA 1425 .......... .......... .......... .......... .......... .......... 57 ATTGAAGGTA TCATTTGATC CAGTCTATAT AAACGTACCG TTTTAGCATC TGTATGATGA 1365 .......... .......... .......... .......... .......... .......... 57 AGTTGGTCTG ATGCAGACTC AACTAATGAA GTTCTAGACA TTCTTGGACT TGGACTTTCA 1305 ||| |||||||| |||||||||| |||||||||| |||||||||| .......... ......ACTG GGCTAATGAA GTTCTAGACA TTCTTGGACT TGGACTTTCA 101 CCTATTTGTT CCTCCCTGTC AAAGTTCAAC AGAGGGCCTT GACCTGTTGA GGACTTTGGT 1245 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCTATTTGTT CCTCCCTGTC AAAGTTCAAC AGAGGGCCTT GACCTGTTGA GGACTTTGGT 161 TTGAGTACGG ACTTTGGTGA TGATGAACAA CTCGAGGCTG TAGGGACTTC TCGGATTAAA 1185 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGAGTACGG ACTTTGGTGA TGATGAACAA CTCGAGGCTG TAGGGACTTC TCGGATTAAA 221 GATTGTAAGC TGATCAAGTC TTGATTGACA GAGCTCTCCG ATGGAATTCC AGGTATCGGA 1125 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| || GATTGTAAGC TGATCAAGTC TTGATTGACA GAGCTCTCCG ATGGAATTCC AG........ 273 TCCTAAGTTA CATTAAAAAG AAAAAACAAT ACTTGAAATT TCAAACACTT CTATAAGTGA 1065 .......... .......... .......... .......... .......... .......... 273 GAAACTGGAA AGAAAATGTT GTTTCTATTA GGTTTTGTTA TGCAGAACTT GAAAATGCAG 1005 .......... .......... .......... .......... .......... .......... 273 GTGCAATTAC ATTTTCCTGT CTGCCAAAAA CACTGCTTTA CTGACACATT ATAATTTTAT 945 .......... .......... .......... .......... .......... .......... 273 TACAAACTTA TGATACACAT TCATTATTTT TAACTATACA CGATTATACA TCTTTTCTGC 885 .......... .......... .......... .......... .......... .......... 273 CTTTAACAAG TCGATACACA ACTAAACTTC ACAAAAAGTA TTGTTTGCAT GCTGGATTTC 825 .......... .......... .......... .......... .......... .......... 273 AACTTATATC AATTAATTTA ACATGGAGTT GATTTCTTAT ATGGTCACTT GGATCGTAGT 765 .......... .......... .......... .......... .......... .......... 273 TATTATCTCA TAAAGTCACT TTCTTTTTGT TGAAGAAAGG TTAATTTCTA AGATGATAAC 705 .......... .......... .......... .......... .......... .......... 273 TATTAGTTGA GTAACCATCA GAGAAATCAA CTCGTTTAAC TTGCATAATC TAATCATTGT 645 .......... .......... .......... .......... .......... .......... 273 CAAATTCATT AAAATCACCA AACCTGCATT CTTTTCTGTG TTTCAGAAGT CGAGGAGCCT 585 |||| |||||||||| .......... .......... .......... .......... ......AAGT CGAGGAGCCT 287 TCACTTGCTG AGAACTTTGG TTGAATCATA GTGTTGGGAG AGGGGGATGA AGTAGAGGCC 525 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCACTTGCTG AGAACTTTGG TTGAATCATA GTGTTGGGAG AGGGGGATGA AGTAGAGGCC 347 CTCGGAACTT GTTCAACCAC CAAATCATGT GGTGATGATG ATGATGATGC TTGTGAACCA 465 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCGGAACTT GTTCAACCAC CAAATCATGT GGTGATGATG ATGATGATGC TTGTGAACCA 407 TCAATACTCT GGCTAATTGT AGAAAAAACT TCTTCAATAG GCTGTTTACC ACCATTATCG 405 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCAATACTCT GGCTAATTGT AGAAAAAACT TCTTCAATAG GCTGTTTACC ACCATTATCG 467 TGAAGTGCTT CATGAATTTC ATTCCTAGGG AGAGACTTTG 365 |||||||||| |||||||||| |||||| || |||||||||| TGAAGTGCTT CATGAATTTC ATTCCTTAGG AGAGACTTTG 507 hqPGS_C06HBa0054K13.1-4-_SGN-E256778+ (1904 1848,1348 1133,598 365) ******************************************************************************** EST sequence 29 +strand 625 n (File: SGN-E250218+) 1 TTTTGTCGCC TCAAAATTAC CCTTATCTGA AGTTTGTTCA CTTGCACTAA TAGGAGTGAC 61 TAAAATTTCA TTCTTGTCAG TTGAACTGGA AGCAAAATTT GTAACATCAC TTGTCTTTTC 121 TTGTTTGTTG TTGTTGGTGG TGTTGGAAGA CACCATAGTG GTCTTGTTTG GTGATTCTAC 181 AGAGACTTCT TTGAGGCTCA TTTTAGACTC AACTAATGAA GTTCTAGANN TTCTTGGACT 241 TGGACTTTCA CCTATTTGTT CCTCCCTGTC AAAGTTCAAC AGAGGGCCTT GACCTGTTGA 301 GGACTTTGGT TTGAGTACGG ACTTTGGTGA TGATGAACAA CTCGAGGCTG TAGGGACTTC 361 TCGGATTAAA GATTGTAAGC TGATCAAGTC TTGATTGACA GAGCTCTCCG ATGGAATTCC 421 AGAAGTCGAG GAGCCTTCAC TTGCTGAGAA CTTTGGTTGA ATCATAGTGT TGGGAGAGGG 481 GGATGAAGTA GAGGCCCTCG GAACTTGTTC AACCACCAAA TCATGTGGTG ATGATGATGA 541 TGATGCTTGT GAACCATCAA TACTCTGGCT AATTGTAGAA AAAACTTCTT CAATAGGCTG 601 TTTACCACCA TTATCGTGAA GTGCT Predicted gene structure (within gDNA segment 2779 to 1): Exon 1 2177 2169 ( 9 n); cDNA 6 14 ( 9 n); score: 0.778 Intron 1 2168 2040 ( 129 n); Pd: 0.900 (s: 0), Pa: 0.821 (s: 1.00) Exon 2 2039 1848 ( 192 n); cDNA 15 206 ( 192 n); score: 1.000 Intron 2 1847 1349 ( 499 n); Pd: 0.999 (s: 1.00), Pa: 0.909 (s: 0.96) Exon 3 1348 1133 ( 216 n); cDNA 207 422 ( 216 n); score: 0.991 Intron 3 1132 599 ( 534 n); Pd: 0.898 (s: 1.00), Pa: 0.983 (s: 1.00) Exon 4 598 396 ( 203 n); cDNA 423 625 ( 203 n); score: 1.000 MATCH C06HBa0054K13.1-4- SGN-E250218+ 0.997 620 0.992 C PGS_C06HBa0054K13.1-4-_SGN-E250218+ (2177 2169,2039 1848,1348 1133,598 396) Alignment (genomic DNA sequence = upper lines): TCTCCTAAAA TATCCCTCGG TGTTTTTGAA GAGTCTGAAC AATATAGAAA ACAAGTGCAT 2118 || ||| || TCGCCTCAA. .......... .......... .......... .......... .......... 14 GTTAACTATC CCCTTATTAG TCTTTAGCCT TCTCTTTACA ATCTCTTTTT TCACTATGTG 2058 .......... .......... .......... .......... .......... .......... 14 TTTCCTTTAA TGCTGCAGAA TTACCCTTAT CTGAAGTTTG TTCACTTGCA CTAATAGGAG 1998 || |||||||||| |||||||||| |||||||||| |||||||||| .......... ........AA TTACCCTTAT CTGAAGTTTG TTCACTTGCA CTAATAGGAG 56 TGACTAAAAT TTCATTCTTG TCAGTTGAAC TGGAAGCAAA ATTTGTAACA TCACTTGTCT 1938 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGACTAAAAT TTCATTCTTG TCAGTTGAAC TGGAAGCAAA ATTTGTAACA TCACTTGTCT 116 TTTCTTGTTT GTTGTTGTTG GTGGTGTTGG AAGACACCAT AGTGGTCTTG TTTGGTGATT 1878 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTCTTGTTT GTTGTTGTTG GTGGTGTTGG AAGACACCAT AGTGGTCTTG TTTGGTGATT 176 CTACAGAGAC TTCTTTGAGG CTCATTTTAG GTAAGTCCTC CTTCTTGACA TCATTGTGAT 1818 |||||||||| |||||||||| |||||||||| CTACAGAGAC TTCTTTGAGG CTCATTTTAG .......... .......... .......... 206 TAGTGGCTTC TTCATGAAAC TTCTCTTCAT CATTGGATGG TTTCTGTATA ACGTTGCAAT 1758 .......... .......... .......... .......... .......... .......... 206 CAAAGACAAA GTATGAATTT CGTTAAGGAT GTTCTAGATT CAACATACAC GTATAGTTTA 1698 .......... .......... .......... .......... .......... .......... 206 TTATATATGC GGTTTATTTT TCCTGGCAAA GGATGTTCAA CTAACCACCG TTGAGCCTAT 1638 .......... .......... .......... .......... .......... .......... 206 GTGACTCCGT ATTACATTAT TTTCACAAGC ACAAAAATAT GATATAATGA ATGTAACAAG 1578 .......... .......... .......... .......... .......... .......... 206 AAAAGACCAT CTATTTATGC TGTTTCAAAG AGAGGGTAAG TTTTATGTAC TGATAAGTGC 1518 .......... .......... .......... .......... .......... .......... 206 GAAAATAGGA GAACCTATTC TCTAAAGGGT GGTTTGGTTT ATCATACTAA CAAAAATAAT 1458 .......... .......... .......... .......... .......... .......... 206 CCTACCATAC TGTCAGTATA TATAACTTAA GTAATTGAAG GTATCATTTG ATCCAGTCTA 1398 .......... .......... .......... .......... .......... .......... 206 TATAAACGTA CCGTTTTAGC ATCTGTATGA TGAAGTTGGT CTGATGCAGA CTCAACTAAT 1338 | |||||||||| .......... .......... .......... .......... .........A CTCAACTAAT 217 GAAGTTCTAG ACATTCTTGG ACTTGGACTT TCACCTATTT GTTCCTCCCT GTCAAAGTTC 1278 |||||||||| | ||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAGTTCTAG ANNTTCTTGG ACTTGGACTT TCACCTATTT GTTCCTCCCT GTCAAAGTTC 277 AACAGAGGGC CTTGACCTGT TGAGGACTTT GGTTTGAGTA CGGACTTTGG TGATGATGAA 1218 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACAGAGGGC CTTGACCTGT TGAGGACTTT GGTTTGAGTA CGGACTTTGG TGATGATGAA 337 CAACTCGAGG CTGTAGGGAC TTCTCGGATT AAAGATTGTA AGCTGATCAA GTCTTGATTG 1158 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAACTCGAGG CTGTAGGGAC TTCTCGGATT AAAGATTGTA AGCTGATCAA GTCTTGATTG 397 ACAGAGCTCT CCGATGGAAT TCCAGGTATC GGATCCTAAG TTACATTAAA AAGAAAAAAC 1098 |||||||||| |||||||||| ||||| ACAGAGCTCT CCGATGGAAT TCCAG..... .......... .......... .......... 422 AATACTTGAA ATTTCAAACA CTTCTATAAG TGAGAAACTG GAAAGAAAAT GTTGTTTCTA 1038 .......... .......... .......... .......... .......... .......... 422 TTAGGTTTTG TTATGCAGAA CTTGAAAATG CAGGTGCAAT TACATTTTCC TGTCTGCCAA 978 .......... .......... .......... .......... .......... .......... 422 AAACACTGCT TTACTGACAC ATTATAATTT TATTACAAAC TTATGATACA CATTCATTAT 918 .......... .......... .......... .......... .......... .......... 422 TTTTAACTAT ACACGATTAT ACATCTTTTC TGCCTTTAAC AAGTCGATAC ACAACTAAAC 858 .......... .......... .......... .......... .......... .......... 422 TTCACAAAAA GTATTGTTTG CATGCTGGAT TTCAACTTAT ATCAATTAAT TTAACATGGA 798 .......... .......... .......... .......... .......... .......... 422 GTTGATTTCT TATATGGTCA CTTGGATCGT AGTTATTATC TCATAAAGTC ACTTTCTTTT 738 .......... .......... .......... .......... .......... .......... 422 TGTTGAAGAA AGGTTAATTT CTAAGATGAT AACTATTAGT TGAGTAACCA TCAGAGAAAT 678 .......... .......... .......... .......... .......... .......... 422 CAACTCGTTT AACTTGCATA ATCTAATCAT TGTCAAATTC ATTAAAATCA CCAAACCTGC 618 .......... .......... .......... .......... .......... .......... 422 ATTCTTTTCT GTGTTTCAGA AGTCGAGGAG CCTTCACTTG CTGAGAACTT TGGTTGAATC 558 | |||||||||| |||||||||| |||||||||| |||||||||| .......... .........A AGTCGAGGAG CCTTCACTTG CTGAGAACTT TGGTTGAATC 463 ATAGTGTTGG GAGAGGGGGA TGAAGTAGAG GCCCTCGGAA CTTGTTCAAC CACCAAATCA 498 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATAGTGTTGG GAGAGGGGGA TGAAGTAGAG GCCCTCGGAA CTTGTTCAAC CACCAAATCA 523 TGTGGTGATG ATGATGATGA TGCTTGTGAA CCATCAATAC TCTGGCTAAT TGTAGAAAAA 438 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTGGTGATG ATGATGATGA TGCTTGTGAA CCATCAATAC TCTGGCTAAT TGTAGAAAAA 583 ACTTCTTCAA TAGGCTGTTT ACCACCATTA TCGTGAAGTG CT 396 |||||||||| |||||||||| |||||||||| |||||||||| || ACTTCTTCAA TAGGCTGTTT ACCACCATTA TCGTGAAGTG CT 625 hqPGS_C06HBa0054K13.1-4-_SGN-E250218+ (2177 2169,2039 1848,1348 1133,598 396) ******************************************************************************** EST sequence 39 +strand 617 n (File: SGN-E256238+) 1 TCAACTTTGG CTTCTTATTC TTATTTGTCT TTGCTGCAAA AATCTTACGC TTTTTGTCGC 61 CTCAAGAGTG ACTAAAATTT CATTCTTGTC AGTTGAACTG GAAGCAAAAT TTGTAACATC 121 ACTTGTCTTT TCTTGTTTGT TGTTGTTGGT GGTGTTGGAA GACACCATAG TGGTCTTGTT 181 TGGTGATTCT ACAGAGACTT CTTTGAGGCT CATTTTAGAC TCAACTAATG AAGTTCTAGA 241 CATTCTTGGA CTTGGACTTT CACCTATTTG TTCCTCCCTG TCAAAGTTCA ACAGAGGGCC 301 TTGACCTGTT GAGGACTTTG GTTTGAGTAC GGACTTTGGT GATGATGAAC AACTCGAGGC 361 TGTAGGGACT TCTCGGATTA AAGATTGTAA GCTGATCAAG TCTTGATTGA CAGAGCTCTC 421 CGATGGAATT CCAGAAGTCG AGGAGCCTTC ACTTGCTGAG AACTTTGGTT GAATCATAGT 481 GTTGGGAGAG GGGGATGAAG TAGAGGCCCT CGGAACTTGT TCAACCACCA AATCATGTGG 541 TGATGATGAT GATGATGCTT GTGAACCATC AATACTCTGG CTAATTGTAG AAAAAACTTC 601 TTCAATAGGC TGTTTAC Predicted gene structure (within gDNA segment 3640 to 1): Exon 1 3040 2976 ( 65 n); cDNA 1 65 ( 65 n); score: 1.000 Intron 1 2975 2001 ( 975 n); Pd: 0.871 (s: 1.00), Pa: 0.198 (s: 1.00) Exon 2 2000 1848 ( 153 n); cDNA 66 218 ( 153 n); score: 1.000 Intron 2 1847 1349 ( 499 n); Pd: 0.999 (s: 1.00), Pa: 0.909 (s: 1.00) Exon 3 1348 1133 ( 216 n); cDNA 219 434 ( 216 n); score: 1.000 Intron 3 1132 599 ( 534 n); Pd: 0.898 (s: 1.00), Pa: 0.983 (s: 1.00) Exon 4 598 416 ( 183 n); cDNA 435 617 ( 183 n); score: 1.000 MATCH C06HBa0054K13.1-4- SGN-E256238+ 1.000 617 1.000 C PGS_C06HBa0054K13.1-4-_SGN-E256238+ (3040 2976,2000 1848,1348 1133,598 416) Alignment (genomic DNA sequence = upper lines): TCAACTTTGG CTTCTTATTC TTATTTGTCT TTGCTGCAAA AATCTTACGC TTTTTGTCGC 2981 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCAACTTTGG CTTCTTATTC TTATTTGTCT TTGCTGCAAA AATCTTACGC TTTTTGTCGC 60 CTCAAGTAAG TTTTCCTTAA GCAAGTAGAA AGTAAATAAA GACATATGTT TTCCTTAAGC 2921 ||||| CTCAA..... .......... .......... .......... .......... .......... 65 AAATACGATA TAGTATTCCT TCTTTCACTT GGCTTTGAAT TCCTTCTTAC ATCTTTATTC 2861 .......... .......... .......... .......... .......... .......... 65 ACATAATTTT TCTACTTTAA GTATGCTAAT AAATTACAAA GTTGTACTTA ATTTTTGATT 2801 .......... .......... .......... .......... .......... .......... 65 TTTACTTCCA GTAAGCTATG TTAAATGAAT TCACGTTTGC TCAGGTTGCT CCAAAATGCA 2741 .......... .......... .......... .......... .......... .......... 65 TCGCACCGGT TTGTTAATCT TCAAAATATA CTCATACATA TTCATATGTA CCTAACAAAT 2681 .......... .......... .......... .......... .......... .......... 65 TAACTTTTCA TGAAAAATGA AGGAAGTATT AGAAGAAAAT TGACATATTT GGAGTGCATG 2621 .......... .......... .......... .......... .......... .......... 65 AAAAAAAATT AAAATAAAAT GAAGACGAAA GAAATCAATT ATATAAAAGT ATTAACAATT 2561 .......... .......... .......... .......... .......... .......... 65 CAAGTTTAAG GCCCCGTTTA ATTTTTGTTT TAGGCCACTA ATATGTTTGA GCCGACCTGA 2501 .......... .......... .......... .......... .......... .......... 65 GTGAAAAATA GTCCTTTGTG AGAATCATCC ACACATATTA GTCCATATAA ATATTAATAG 2441 .......... .......... .......... .......... .......... .......... 65 CATAATTTTT TTTCTAAAAA CTGAAAATAG TAACATAAAT ATGAGTGCAG GTTTACCTGC 2381 .......... .......... .......... .......... .......... .......... 65 TACAAACATG TTTTCAGTGT CATTCTCTAT AAATTATACA TCCTAATATA CTATACAACA 2321 .......... .......... .......... .......... .......... .......... 65 ATAAATTTCC TCTTGACTCT CCTATGTGTA TACATCAAAC TTCATAGAGC TCCTATATAC 2261 .......... .......... .......... .......... .......... .......... 65 ACCAGGTATC TTACAAATGA AAATTGAGTT ACACATTTAA GGAGTCTCAT GGGAAAAGAA 2201 .......... .......... .......... .......... .......... .......... 65 GAAACAAACT ATGTTGTTTG AACTCTCCTA AAATATCCCT CGGTGTTTTT GAAGAGTCTG 2141 .......... .......... .......... .......... .......... .......... 65 AACAATATAG AAAACAAGTG CATGTTAACT ATCCCCTTAT TAGTCTTTAG CCTTCTCTTT 2081 .......... .......... .......... .......... .......... .......... 65 ACAATCTCTT TTTTCACTAT GTGTTTCCTT TAATGCTGCA GAATTACCCT TATCTGAAGT 2021 .......... .......... .......... .......... .......... .......... 65 TTGTTCACTT GCACTAATAG GAGTGACTAA AATTTCATTC TTGTCAGTTG AACTGGAAGC 1961 |||||||||| |||||||||| |||||||||| |||||||||| .......... .......... GAGTGACTAA AATTTCATTC TTGTCAGTTG AACTGGAAGC 105 AAAATTTGTA ACATCACTTG TCTTTTCTTG TTTGTTGTTG TTGGTGGTGT TGGAAGACAC 1901 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAATTTGTA ACATCACTTG TCTTTTCTTG TTTGTTGTTG TTGGTGGTGT TGGAAGACAC 165 CATAGTGGTC TTGTTTGGTG ATTCTACAGA GACTTCTTTG AGGCTCATTT TAGGTAAGTC 1841 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||| CATAGTGGTC TTGTTTGGTG ATTCTACAGA GACTTCTTTG AGGCTCATTT TAG....... 218 CTCCTTCTTG ACATCATTGT GATTAGTGGC TTCTTCATGA AACTTCTCTT CATCATTGGA 1781 .......... .......... .......... .......... .......... .......... 218 TGGTTTCTGT ATAACGTTGC AATCAAAGAC AAAGTATGAA TTTCGTTAAG GATGTTCTAG 1721 .......... .......... .......... .......... .......... .......... 218 ATTCAACATA CACGTATAGT TTATTATATA TGCGGTTTAT TTTTCCTGGC AAAGGATGTT 1661 .......... .......... .......... .......... .......... .......... 218 CAACTAACCA CCGTTGAGCC TATGTGACTC CGTATTACAT TATTTTCACA AGCACAAAAA 1601 .......... .......... .......... .......... .......... .......... 218 TATGATATAA TGAATGTAAC AAGAAAAGAC CATCTATTTA TGCTGTTTCA AAGAGAGGGT 1541 .......... .......... .......... .......... .......... .......... 218 AAGTTTTATG TACTGATAAG TGCGAAAATA GGAGAACCTA TTCTCTAAAG GGTGGTTTGG 1481 .......... .......... .......... .......... .......... .......... 218 TTTATCATAC TAACAAAAAT AATCCTACCA TACTGTCAGT ATATATAACT TAAGTAATTG 1421 .......... .......... .......... .......... .......... .......... 218 AAGGTATCAT TTGATCCAGT CTATATAAAC GTACCGTTTT AGCATCTGTA TGATGAAGTT 1361 .......... .......... .......... .......... .......... .......... 218 GGTCTGATGC AGACTCAACT AATGAAGTTC TAGACATTCT TGGACTTGGA CTTTCACCTA 1301 |||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ..ACTCAACT AATGAAGTTC TAGACATTCT TGGACTTGGA CTTTCACCTA 266 TTTGTTCCTC CCTGTCAAAG TTCAACAGAG GGCCTTGACC TGTTGAGGAC TTTGGTTTGA 1241 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTGTTCCTC CCTGTCAAAG TTCAACAGAG GGCCTTGACC TGTTGAGGAC TTTGGTTTGA 326 GTACGGACTT TGGTGATGAT GAACAACTCG AGGCTGTAGG GACTTCTCGG ATTAAAGATT 1181 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTACGGACTT TGGTGATGAT GAACAACTCG AGGCTGTAGG GACTTCTCGG ATTAAAGATT 386 GTAAGCTGAT CAAGTCTTGA TTGACAGAGC TCTCCGATGG AATTCCAGGT ATCGGATCCT 1121 |||||||||| |||||||||| |||||||||| |||||||||| |||||||| GTAAGCTGAT CAAGTCTTGA TTGACAGAGC TCTCCGATGG AATTCCAG.. .......... 434 AAGTTACATT AAAAAGAAAA AACAATACTT GAAATTTCAA ACACTTCTAT AAGTGAGAAA 1061 .......... .......... .......... .......... .......... .......... 434 CTGGAAAGAA AATGTTGTTT CTATTAGGTT TTGTTATGCA GAACTTGAAA ATGCAGGTGC 1001 .......... .......... .......... .......... .......... .......... 434 AATTACATTT TCCTGTCTGC CAAAAACACT GCTTTACTGA CACATTATAA TTTTATTACA 941 .......... .......... .......... .......... .......... .......... 434 AACTTATGAT ACACATTCAT TATTTTTAAC TATACACGAT TATACATCTT TTCTGCCTTT 881 .......... .......... .......... .......... .......... .......... 434 AACAAGTCGA TACACAACTA AACTTCACAA AAAGTATTGT TTGCATGCTG GATTTCAACT 821 .......... .......... .......... .......... .......... .......... 434 TATATCAATT AATTTAACAT GGAGTTGATT TCTTATATGG TCACTTGGAT CGTAGTTATT 761 .......... .......... .......... .......... .......... .......... 434 ATCTCATAAA GTCACTTTCT TTTTGTTGAA GAAAGGTTAA TTTCTAAGAT GATAACTATT 701 .......... .......... .......... .......... .......... .......... 434 AGTTGAGTAA CCATCAGAGA AATCAACTCG TTTAACTTGC ATAATCTAAT CATTGTCAAA 641 .......... .......... .......... .......... .......... .......... 434 TTCATTAAAA TCACCAAACC TGCATTCTTT TCTGTGTTTC AGAAGTCGAG GAGCCTTCAC 581 |||||||| |||||||||| .......... .......... .......... .......... ..AAGTCGAG GAGCCTTCAC 452 TTGCTGAGAA CTTTGGTTGA ATCATAGTGT TGGGAGAGGG GGATGAAGTA GAGGCCCTCG 521 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGCTGAGAA CTTTGGTTGA ATCATAGTGT TGGGAGAGGG GGATGAAGTA GAGGCCCTCG 512 GAACTTGTTC AACCACCAAA TCATGTGGTG ATGATGATGA TGATGCTTGT GAACCATCAA 461 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAACTTGTTC AACCACCAAA TCATGTGGTG ATGATGATGA TGATGCTTGT GAACCATCAA 572 TACTCTGGCT AATTGTAGAA AAAACTTCTT CAATAGGCTG TTTAC 416 |||||||||| |||||||||| |||||||||| |||||||||| ||||| TACTCTGGCT AATTGTAGAA AAAACTTCTT CAATAGGCTG TTTAC 617 hqPGS_C06HBa0054K13.1-4-_SGN-E256238+ (3040 2976,2000 1848,1348 1133,598 416) ******************************************************************************** EST sequence 34 +strand 446 n (File: SGN-E250747+) 1 AAAATTTGTA ACATCACTTG TCTTTTCTTG TTTGTTGTTG TTGGTGGTGT TGGAAGACAC 61 CATAGTGGTC TTGTTTGGTG ATTCTACAGA GACTTCTTTG AGGCTCATTT TAGACTCAAC 121 TAATGAAGTT CTAGACATTC TTGGACTTGG ACTTTCACCT ATTTGTTCCT CCCTGTCAAA 181 GTTCAACAGA GGGCCTTGAC CTGTTGAGGA CTTTGGTTTG AGTACGGACT TTGGTGATGA 241 TGAACAACTC GAGGCTGTAG GGACTTCTCG GATTAAAGAT TGTAAGCTGA TCAAGTCTTG 301 ATTGACAGAG CTCTCCGATG GAATTCCAGA AGTCGAGGAG CCTTCACTTG CTGAGAACTT 361 TGGTTGAATC ATACTGTTGG GAGAGGGGGA TGAAATATAG GCCCTCGGAA CTTGTTCAAC 421 CACCAAATCA TGTGGTGATG ATGATG Predicted gene structure (within gDNA segment 2560 to 1): Exon 1 1960 1848 ( 113 n); cDNA 1 113 ( 113 n); score: 1.000 Intron 1 1847 1349 ( 499 n); Pd: 0.999 (s: 1.00), Pa: 0.909 (s: 1.00) Exon 2 1348 1133 ( 216 n); cDNA 114 329 ( 216 n); score: 1.000 Intron 2 1132 599 ( 534 n); Pd: 0.898 (s: 1.00), Pa: 0.983 (s: 0.98) Exon 3 598 482 ( 117 n); cDNA 330 446 ( 117 n); score: 0.974 MATCH C06HBa0054K13.1-4- SGN-E250747+ 0.993 446 1.000 C PGS_C06HBa0054K13.1-4-_SGN-E250747+ (1960 1848,1348 1133,598 482) Alignment (genomic DNA sequence = upper lines): AAAATTTGTA ACATCACTTG TCTTTTCTTG TTTGTTGTTG TTGGTGGTGT TGGAAGACAC 1901 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAATTTGTA ACATCACTTG TCTTTTCTTG TTTGTTGTTG TTGGTGGTGT TGGAAGACAC 60 CATAGTGGTC TTGTTTGGTG ATTCTACAGA GACTTCTTTG AGGCTCATTT TAGGTAAGTC 1841 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||| CATAGTGGTC TTGTTTGGTG ATTCTACAGA GACTTCTTTG AGGCTCATTT TAG....... 113 CTCCTTCTTG ACATCATTGT GATTAGTGGC TTCTTCATGA AACTTCTCTT CATCATTGGA 1781 .......... .......... .......... .......... .......... .......... 113 TGGTTTCTGT ATAACGTTGC AATCAAAGAC AAAGTATGAA TTTCGTTAAG GATGTTCTAG 1721 .......... .......... .......... .......... .......... .......... 113 ATTCAACATA CACGTATAGT TTATTATATA TGCGGTTTAT TTTTCCTGGC AAAGGATGTT 1661 .......... .......... .......... .......... .......... .......... 113 CAACTAACCA CCGTTGAGCC TATGTGACTC CGTATTACAT TATTTTCACA AGCACAAAAA 1601 .......... .......... .......... .......... .......... .......... 113 TATGATATAA TGAATGTAAC AAGAAAAGAC CATCTATTTA TGCTGTTTCA AAGAGAGGGT 1541 .......... .......... .......... .......... .......... .......... 113 AAGTTTTATG TACTGATAAG TGCGAAAATA GGAGAACCTA TTCTCTAAAG GGTGGTTTGG 1481 .......... .......... .......... .......... .......... .......... 113 TTTATCATAC TAACAAAAAT AATCCTACCA TACTGTCAGT ATATATAACT TAAGTAATTG 1421 .......... .......... .......... .......... .......... .......... 113 AAGGTATCAT TTGATCCAGT CTATATAAAC GTACCGTTTT AGCATCTGTA TGATGAAGTT 1361 .......... .......... .......... .......... .......... .......... 113 GGTCTGATGC AGACTCAACT AATGAAGTTC TAGACATTCT TGGACTTGGA CTTTCACCTA 1301 |||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ..ACTCAACT AATGAAGTTC TAGACATTCT TGGACTTGGA CTTTCACCTA 161 TTTGTTCCTC CCTGTCAAAG TTCAACAGAG GGCCTTGACC TGTTGAGGAC TTTGGTTTGA 1241 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTGTTCCTC CCTGTCAAAG TTCAACAGAG GGCCTTGACC TGTTGAGGAC TTTGGTTTGA 221 GTACGGACTT TGGTGATGAT GAACAACTCG AGGCTGTAGG GACTTCTCGG ATTAAAGATT 1181 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTACGGACTT TGGTGATGAT GAACAACTCG AGGCTGTAGG GACTTCTCGG ATTAAAGATT 281 GTAAGCTGAT CAAGTCTTGA TTGACAGAGC TCTCCGATGG AATTCCAGGT ATCGGATCCT 1121 |||||||||| |||||||||| |||||||||| |||||||||| |||||||| GTAAGCTGAT CAAGTCTTGA TTGACAGAGC TCTCCGATGG AATTCCAG.. .......... 329 AAGTTACATT AAAAAGAAAA AACAATACTT GAAATTTCAA ACACTTCTAT AAGTGAGAAA 1061 .......... .......... .......... .......... .......... .......... 329 CTGGAAAGAA AATGTTGTTT CTATTAGGTT TTGTTATGCA GAACTTGAAA ATGCAGGTGC 1001 .......... .......... .......... .......... .......... .......... 329 AATTACATTT TCCTGTCTGC CAAAAACACT GCTTTACTGA CACATTATAA TTTTATTACA 941 .......... .......... .......... .......... .......... .......... 329 AACTTATGAT ACACATTCAT TATTTTTAAC TATACACGAT TATACATCTT TTCTGCCTTT 881 .......... .......... .......... .......... .......... .......... 329 AACAAGTCGA TACACAACTA AACTTCACAA AAAGTATTGT TTGCATGCTG GATTTCAACT 821 .......... .......... .......... .......... .......... .......... 329 TATATCAATT AATTTAACAT GGAGTTGATT TCTTATATGG TCACTTGGAT CGTAGTTATT 761 .......... .......... .......... .......... .......... .......... 329 ATCTCATAAA GTCACTTTCT TTTTGTTGAA GAAAGGTTAA TTTCTAAGAT GATAACTATT 701 .......... .......... .......... .......... .......... .......... 329 AGTTGAGTAA CCATCAGAGA AATCAACTCG TTTAACTTGC ATAATCTAAT CATTGTCAAA 641 .......... .......... .......... .......... .......... .......... 329 TTCATTAAAA TCACCAAACC TGCATTCTTT TCTGTGTTTC AGAAGTCGAG GAGCCTTCAC 581 |||||||| |||||||||| .......... .......... .......... .......... ..AAGTCGAG GAGCCTTCAC 347 TTGCTGAGAA CTTTGGTTGA ATCATAGTGT TGGGAGAGGG GGATGAAGTA GAGGCCCTCG 521 |||||||||| |||||||||| |||||| ||| |||||||||| ||||||| || ||||||||| TTGCTGAGAA CTTTGGTTGA ATCATACTGT TGGGAGAGGG GGATGAAATA TAGGCCCTCG 407 GAACTTGTTC AACCACCAAA TCATGTGGTG ATGATGATG 482 |||||||||| |||||||||| |||||||||| ||||||||| GAACTTGTTC AACCACCAAA TCATGTGGTG ATGATGATG 446 hqPGS_C06HBa0054K13.1-4-_SGN-E250747+ (1960 1848,1348 1133,598 482) ******************************************************************************** EST sequence 18 -strand 595 n (File: SGN-E392517-) 1 TGATGATGAT GATGATGCTT GTGAACCATC AATACTCTGG CTAATTGTAG AAAAAACTTC 61 TTCAATAGGC TGTTTACCAC CATTATCGTG AAGTGCTTCA TGAATTTCAT TCCTAGGGAG 121 AGCCCCCCCC TTTTCTGCAG ACTTCTGTGT CTTCGGATGT GGTACTGAAC TTTGCACTGT 181 CGGATTTCTT AACGTAAGTT TTGAGCTCCG AGTACTGGTT GGATCACAAC TTTCAGCAGT 241 TACTTCATCT GTCAGCTTAT TTTTTAGTTT GCGCCTATCT ACTTGTTGAG CCTCCAAATT 301 TGAACTAGAT CCTTTATCAA TGGAAAATGT TGGTTGCGAA ACAGACTTAG ACGATGATGT 361 ACTAGAAGAG GCTTCAAATG AGTGATGTCC TTGTCCAATA GTCGAAAATG CCACAGGTTC 421 ACTATGTTGT TCGCTGGCAC TGTCTAGAAC GAGTGCAGCG ACATCGTTCT CTTTGGCTGA 481 AATTGAATTT TCTGTTTCTG AAGGTAATTC AGAAACTTGT AATGTTAAGT TGCTTAAACT 541 AAGATCTGAT TCCTGTGAAG CAATTGAATC TGATCTTTCA CTAAAAAAAA AAAAA Predicted gene structure (within gDNA segment 1102 to 1): Exon 1 492 1 ( 492 n); cDNA 1 492 ( 492 n); score: 0.986 PPA cDNA 583 595 MATCH C06HBa0054K13.1-4- SGN-E392517- 0.986 492 0.827 C PGS_C06HBa0054K13.1-4-_SGN-E392517- (492 1) Alignment (genomic DNA sequence = upper lines): TGATGATGAT GATGATGCTT GTGAACCATC AATACTCTGG CTAATTGTAG AAAAAACTTC 433 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGATGATGAT GATGATGCTT GTGAACCATC AATACTCTGG CTAATTGTAG AAAAAACTTC 60 TTCAATAGGC TGTTTACCAC CATTATCGTG AAGTGCTTCA TGAATTTCAT TCCTAGGGAG 373 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCAATAGGC TGTTTACCAC CATTATCGTG AAGTGCTTCA TGAATTTCAT TCCTAGGGAG 120 AGACTTTGAA TTTTCTGCAG ACTTCTGTGT CTTCGGATGT GGTACTGAAC TTTGCACTGT 313 || | |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCCCCCCCC TTTTCTGCAG ACTTCTGTGT CTTCGGATGT GGTACTGAAC TTTGCACTGT 180 CGGATTTCTT AACGTAAGTT TTGAGCTCCG AGTACTGGTT GGATCACAAC TTTCAGCAGT 253 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGGATTTCTT AACGTAAGTT TTGAGCTCCG AGTACTGGTT GGATCACAAC TTTCAGCAGT 240 TACTTCATCT GTCAGCTTAT TTTTTAGTTT GCGCCTATCT ACTTGTTGAG CCTCCAAATT 193 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TACTTCATCT GTCAGCTTAT TTTTTAGTTT GCGCCTATCT ACTTGTTGAG CCTCCAAATT 300 TGAACTAGAT CCTTTATCAA TGGAAAATGT TGGTTGCGAA ACAGACTTAG ACGATGATGT 133 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAACTAGAT CCTTTATCAA TGGAAAATGT TGGTTGCGAA ACAGACTTAG ACGATGATGT 360 ACTAGAAGAG GCTTCAAATG AGTGATGTCC TTGTCCAATA GTCGAAAATG CCACAGGTTC 73 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACTAGAAGAG GCTTCAAATG AGTGATGTCC TTGTCCAATA GTCGAAAATG CCACAGGTTC 420 ACTATGTTGT TCGCTGGCAC TGTCTAGAAC GAGTGCAGCG ACATCGTTCT CTTTGGCTGA 13 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACTATGTTGT TCGCTGGCAC TGTCTAGAAC GAGTGCAGCG ACATCGTTCT CTTTGGCTGA 480 AATTGAATTT TC 1 |||||||||| || AATTGAATTT TC 492 hqPGS_C06HBa0054K13.1-4-_SGN-E392517- (492 1) ******************************************************************************** EST sequence 11 -strand 521 n (File: SGN-E253834-) 1 CTTCAATAGG CTGTTTACCA CCATTATCGT GAAGTGCTTC ATGAATTTCA TTCCTAGGGA 61 GAGACTTTGA ATTTTCTGCA GACTTCTGTG TCTTCGGATG TGGTACTGAA CTTTGCACTG 121 TCGGATTTCT TAACGTAAGT TTTGAGCTCC GAGTACTGGT TGGATCACAA CTTTCAGCAG 181 TTACTTCATC TGTCAGCTTA TTTTTTAGTT TGCGCCTATC TACTTGTTGA GCCTCCAAAT 241 TTGAACTAGA TCCTTTATCA ATGGAAAATG TTGGTTGCGA AACAGACTTA GACGATGATG 301 TACTAGAAGA GGCTTCAAAT GAGTGATGTC CTTGTCCAAT AGTCGAAAAT GCCACAGGTT 361 CACTATGTTG TTCGCTGGCA CTGTCTAGAA CGAGTGCAGC GACATCGTTC TCTTTGGCTG 421 AAATTGAATT TTCTGTTTCT GAAGGTAATT CAGAAACTTG TAATGCCAAG TTGCCCAAAC 481 TAAGATCTGA TTCCTGAGAA GCAATAGAAT CTGATCTTTC A Predicted gene structure (within gDNA segment 1043 to 1): Exon 1 433 1 ( 433 n); cDNA 1 433 ( 433 n); score: 1.000 MATCH C06HBa0054K13.1-4- SGN-E253834- 1.000 433 0.831 C PGS_C06HBa0054K13.1-4-_SGN-E253834- (433 1) Alignment (genomic DNA sequence = upper lines): CTTCAATAGG CTGTTTACCA CCATTATCGT GAAGTGCTTC ATGAATTTCA TTCCTAGGGA 374 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTCAATAGG CTGTTTACCA CCATTATCGT GAAGTGCTTC ATGAATTTCA TTCCTAGGGA 60 GAGACTTTGA ATTTTCTGCA GACTTCTGTG TCTTCGGATG TGGTACTGAA CTTTGCACTG 314 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGACTTTGA ATTTTCTGCA GACTTCTGTG TCTTCGGATG TGGTACTGAA CTTTGCACTG 120 TCGGATTTCT TAACGTAAGT TTTGAGCTCC GAGTACTGGT TGGATCACAA CTTTCAGCAG 254 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCGGATTTCT TAACGTAAGT TTTGAGCTCC GAGTACTGGT TGGATCACAA CTTTCAGCAG 180 TTACTTCATC TGTCAGCTTA TTTTTTAGTT TGCGCCTATC TACTTGTTGA GCCTCCAAAT 194 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTACTTCATC TGTCAGCTTA TTTTTTAGTT TGCGCCTATC TACTTGTTGA GCCTCCAAAT 240 TTGAACTAGA TCCTTTATCA ATGGAAAATG TTGGTTGCGA AACAGACTTA GACGATGATG 134 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGAACTAGA TCCTTTATCA ATGGAAAATG TTGGTTGCGA AACAGACTTA GACGATGATG 300 TACTAGAAGA GGCTTCAAAT GAGTGATGTC CTTGTCCAAT AGTCGAAAAT GCCACAGGTT 74 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TACTAGAAGA GGCTTCAAAT GAGTGATGTC CTTGTCCAAT AGTCGAAAAT GCCACAGGTT 360 CACTATGTTG TTCGCTGGCA CTGTCTAGAA CGAGTGCAGC GACATCGTTC TCTTTGGCTG 14 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CACTATGTTG TTCGCTGGCA CTGTCTAGAA CGAGTGCAGC GACATCGTTC TCTTTGGCTG 420 AAATTGAATT TTC 1 |||||||||| ||| AAATTGAATT TTC 433 hqPGS_C06HBa0054K13.1-4-_SGN-E253834- (433 1) ******************************************************************************** EST sequence 16 -strand 319 n (File: SGN-E375471-) 1 TTTTAGTTTG CGCCTATCTA CTTGTTGAGC CTCCAAATTT GAACTAGATC CTTTATCAAT 61 GGAAAATGTT GGTTGCGAAA CAGACTTAGA CGATGATGTA CTAGAAGAGG CTTCAAATGA 121 GTGATGTCCT TGTCCAATAG TCGAAAATGC CACAGGTTCA CTATGTTGTT CGCTGGCACT 181 GTCTAGAACG AGTGCAGCGA CATCGTTCTC TTTGGCTGAA ATTGAATTTT CTGTTTCTGA 241 AGGTAATTCA GAAACTTGTA ATGTTAAGTT GCTTAAACTA AGATCTGATT CCTGTGAAGC 301 AATTGAATCT GATCTTTCA Predicted gene structure (within gDNA segment 841 to 1): Exon 1 231 1 ( 231 n); cDNA 1 231 ( 231 n); score: 1.000 MATCH C06HBa0054K13.1-4- SGN-E375471- 1.000 231 0.724 C PGS_C06HBa0054K13.1-4-_SGN-E375471- (231 1) Alignment (genomic DNA sequence = upper lines): TTTTAGTTTG CGCCTATCTA CTTGTTGAGC CTCCAAATTT GAACTAGATC CTTTATCAAT 172 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTTAGTTTG CGCCTATCTA CTTGTTGAGC CTCCAAATTT GAACTAGATC CTTTATCAAT 60 GGAAAATGTT GGTTGCGAAA CAGACTTAGA CGATGATGTA CTAGAAGAGG CTTCAAATGA 112 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGAAAATGTT GGTTGCGAAA CAGACTTAGA CGATGATGTA CTAGAAGAGG CTTCAAATGA 120 GTGATGTCCT TGTCCAATAG TCGAAAATGC CACAGGTTCA CTATGTTGTT CGCTGGCACT 52 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGATGTCCT TGTCCAATAG TCGAAAATGC CACAGGTTCA CTATGTTGTT CGCTGGCACT 180 GTCTAGAACG AGTGCAGCGA CATCGTTCTC TTTGGCTGAA ATTGAATTTT C 1 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| | GTCTAGAACG AGTGCAGCGA CATCGTTCTC TTTGGCTGAA ATTGAATTTT C 231 hqPGS_C06HBa0054K13.1-4-_SGN-E375471- (231 1) ******************************************************************************** EST sequence 33 +strand 344 n (File: SGN-E264485+) 1 CAAATGAGTG ATGTCCTTGT CCAATAGTCG AAAATGCCAC AGGTTCACTA TGTTGTTCGC 61 TGGCACTGTC TAGAACGAGT GCAGCGACAT CGTTCTCTTT GGCTGAAATT GAATTTTCTG 121 TTTCTGAAGG TAATTCAGAA ACTTGTAATG TTAAGTTGCT TAAACTAAGA TCTGATTCCT 181 GTGAAGCAAT TGAATCTGAT CTTTCACTAG ATATGTTCAC TGACCTATCA TTTTGTAGCT 241 GATCAATACT CGAAGAGGAT CCATGTTCAA TCAAACAATT TGGTTGTAGA ACAGATGTCG 301 GTGATACTAA TGACGTTAAT GCGAAAGGGA GTTGTTGTGC TGGA Predicted gene structure (within gDNA segment 718 to 1): Exon 1 118 1 ( 118 n); cDNA 1 118 ( 118 n); score: 1.000 MATCH C06HBa0054K13.1-4- SGN-E264485+ 1.000 118 0.343 C PGS_C06HBa0054K13.1-4-_SGN-E264485+ (118 1) Alignment (genomic DNA sequence = upper lines): CAAATGAGTG ATGTCCTTGT CCAATAGTCG AAAATGCCAC AGGTTCACTA TGTTGTTCGC 59 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAATGAGTG ATGTCCTTGT CCAATAGTCG AAAATGCCAC AGGTTCACTA TGTTGTTCGC 60 TGGCACTGTC TAGAACGAGT GCAGCGACAT CGTTCTCTTT GGCTGAAATT GAATTTTC 1 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||| TGGCACTGTC TAGAACGAGT GCAGCGACAT CGTTCTCTTT GGCTGAAATT GAATTTTC 118 hqPGS_C06HBa0054K13.1-4-_SGN-E264485+ (118 1) ******************************************************************************** EST sequence 46 +strand 520 n (File: SGN-E258728+) 1 GTTTTTGAAG AGTCTGAACA ATATAGAAAA CAAGTGCATG TTAACTATCC CCTTATTAGT 61 CTTTAGCCTT CTCTTTACAA TCTCTTTTTT CACTATGTGT TTCCTTTAAT GCTGCAGAAT 121 TACCCTTATC TGAAGTTTGT TCACTTGCAC TAATAGGAGT GACTAAAATT TCATTCTTGT 181 CAGTTGAACT GGAAGCAAAA TTTGTAACAT CACTTGTCTT TTCTTGTTTG TTGTTGTTGG 241 TGGTGTTGGA AGACACCATA GTGGTCTTGT TTGGTGATTC TACAGAGACT TCTTTGAGGC 301 TCATTTTAGA CTCAACTAAT GAAGTTCTAG ACATTCTTGG ACTTGGACTT TCACCTATTT 361 GTTCCTCCCT GTCAAAGTTC AACAGAGGGC CTTGACCTGT TGAGGACTTT GGTTTGAGTA 421 CGGACTTTGG TGATGATGAA CAACTCGAGG CTGTAGGGAC TTCTCGGATT AAAGATTGTA 481 AGCTGATCAA GTCTTGATTG ACAGAGCTCT CCGATGGAAT Predicted gene structure (within gDNA segment 2756 to 528): Exon 1 2156 1848 ( 309 n); cDNA 1 309 ( 309 n); score: 1.000 Intron 1 1847 1349 ( 499 n); Pd: 0.999 (s: 1.00), Pa: 0.909 (s: 1.00) Exon 2 1348 1138 ( 211 n); cDNA 310 520 ( 211 n); score: 1.000 MATCH C06HBa0054K13.1-4- SGN-E258728+ 1.000 520 1.000 C PGS_C06HBa0054K13.1-4-_SGN-E258728+ (2156 1848,1348 1138) Alignment (genomic DNA sequence = upper lines): GTTTTTGAAG AGTCTGAACA ATATAGAAAA CAAGTGCATG TTAACTATCC CCTTATTAGT 2097 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTTTTGAAG AGTCTGAACA ATATAGAAAA CAAGTGCATG TTAACTATCC CCTTATTAGT 60 CTTTAGCCTT CTCTTTACAA TCTCTTTTTT CACTATGTGT TTCCTTTAAT GCTGCAGAAT 2037 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTTAGCCTT CTCTTTACAA TCTCTTTTTT CACTATGTGT TTCCTTTAAT GCTGCAGAAT 120 TACCCTTATC TGAAGTTTGT TCACTTGCAC TAATAGGAGT GACTAAAATT TCATTCTTGT 1977 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TACCCTTATC TGAAGTTTGT TCACTTGCAC TAATAGGAGT GACTAAAATT TCATTCTTGT 180 CAGTTGAACT GGAAGCAAAA TTTGTAACAT CACTTGTCTT TTCTTGTTTG TTGTTGTTGG 1917 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAGTTGAACT GGAAGCAAAA TTTGTAACAT CACTTGTCTT TTCTTGTTTG TTGTTGTTGG 240 TGGTGTTGGA AGACACCATA GTGGTCTTGT TTGGTGATTC TACAGAGACT TCTTTGAGGC 1857 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGTGTTGGA AGACACCATA GTGGTCTTGT TTGGTGATTC TACAGAGACT TCTTTGAGGC 300 TCATTTTAGG TAAGTCCTCC TTCTTGACAT CATTGTGATT AGTGGCTTCT TCATGAAACT 1797 ||||||||| TCATTTTAG. .......... .......... .......... .......... .......... 309 TCTCTTCATC ATTGGATGGT TTCTGTATAA CGTTGCAATC AAAGACAAAG TATGAATTTC 1737 .......... .......... .......... .......... .......... .......... 309 GTTAAGGATG TTCTAGATTC AACATACACG TATAGTTTAT TATATATGCG GTTTATTTTT 1677 .......... .......... .......... .......... .......... .......... 309 CCTGGCAAAG GATGTTCAAC TAACCACCGT TGAGCCTATG TGACTCCGTA TTACATTATT 1617 .......... .......... .......... .......... .......... .......... 309 TTCACAAGCA CAAAAATATG ATATAATGAA TGTAACAAGA AAAGACCATC TATTTATGCT 1557 .......... .......... .......... .......... .......... .......... 309 GTTTCAAAGA GAGGGTAAGT TTTATGTACT GATAAGTGCG AAAATAGGAG AACCTATTCT 1497 .......... .......... .......... .......... .......... .......... 309 CTAAAGGGTG GTTTGGTTTA TCATACTAAC AAAAATAATC CTACCATACT GTCAGTATAT 1437 .......... .......... .......... .......... .......... .......... 309 ATAACTTAAG TAATTGAAGG TATCATTTGA TCCAGTCTAT ATAAACGTAC CGTTTTAGCA 1377 .......... .......... .......... .......... .......... .......... 309 TCTGTATGAT GAAGTTGGTC TGATGCAGAC TCAACTAATG AAGTTCTAGA CATTCTTGGA 1317 || |||||||||| |||||||||| |||||||||| .......... .......... ........AC TCAACTAATG AAGTTCTAGA CATTCTTGGA 341 CTTGGACTTT CACCTATTTG TTCCTCCCTG TCAAAGTTCA ACAGAGGGCC TTGACCTGTT 1257 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTGGACTTT CACCTATTTG TTCCTCCCTG TCAAAGTTCA ACAGAGGGCC TTGACCTGTT 401 GAGGACTTTG GTTTGAGTAC GGACTTTGGT GATGATGAAC AACTCGAGGC TGTAGGGACT 1197 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGGACTTTG GTTTGAGTAC GGACTTTGGT GATGATGAAC AACTCGAGGC TGTAGGGACT 461 TCTCGGATTA AAGATTGTAA GCTGATCAAG TCTTGATTGA CAGAGCTCTC CGATGGAAT 1138 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| TCTCGGATTA AAGATTGTAA GCTGATCAAG TCTTGATTGA CAGAGCTCTC CGATGGAAT 520 hqPGS_C06HBa0054K13.1-4-_SGN-E258728+ (2156 1848,1348 1138) ******************************************************************************** EST sequence 43 +strand 538 n (File: SGN-E256700+) 1 TACAAATGAA AATTGAGTTA CACATTTAAG GAGTCTCATG GGAAAAGAAG AAACAAACTA 61 TGTTGTTTGA ACTCTCCTAA AATATCCCTC GGTGTTTTTG AAGAGTCTGA ACAATATAGA 121 AAACAAGTGC ATGTTAACTA TCCCCTTATT AGTCTTTAGC CTTCTCTTTA CAATCTCTTT 181 TTTCACTATG TGTTTCCTTT AATGCTGCAG AATTACCCTT ATCTGAAGTT TGTTCACTTG 241 CACTAATAGG AGTGACTAAA ATTTCATTCT TGTCAGTTGA ACTGGAAGCA AAATTTGTAA 301 CATCACTTGT CTTTTCTTGT TTGTTGTTGT TGGTGGTGTT GGAAGACACC ATAGTGGTCT 361 TGTTTGGTGA TTCTACAGAG ACTTCTTTGA GGCTCATTTT AGACTCAACT AATGAAGTTC 421 TAGACATTCT TGGACTTGGA CTTTCACCTA TTTGTTCCTC CCTGTCAAAG TTCAACAGAG 481 GGCCTTGACC TGTTGAGGAC TTTGGTTTGA GTACGGACTT TGGTGATGAT GAACAACT Predicted gene structure (within gDNA segment 2849 to 603): Exon 1 2249 1848 ( 402 n); cDNA 1 402 ( 402 n); score: 1.000 Intron 1 1847 1349 ( 499 n); Pd: 0.999 (s: 1.00), Pa: 0.909 (s: 1.00) Exon 2 1348 1213 ( 136 n); cDNA 403 538 ( 136 n); score: 1.000 MATCH C06HBa0054K13.1-4- SGN-E256700+ 1.000 538 1.000 C PGS_C06HBa0054K13.1-4-_SGN-E256700+ (2249 1848,1348 1213) Alignment (genomic DNA sequence = upper lines): TACAAATGAA AATTGAGTTA CACATTTAAG GAGTCTCATG GGAAAAGAAG AAACAAACTA 2190 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TACAAATGAA AATTGAGTTA CACATTTAAG GAGTCTCATG GGAAAAGAAG AAACAAACTA 60 TGTTGTTTGA ACTCTCCTAA AATATCCCTC GGTGTTTTTG AAGAGTCTGA ACAATATAGA 2130 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTTGTTTGA ACTCTCCTAA AATATCCCTC GGTGTTTTTG AAGAGTCTGA ACAATATAGA 120 AAACAAGTGC ATGTTAACTA TCCCCTTATT AGTCTTTAGC CTTCTCTTTA CAATCTCTTT 2070 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAACAAGTGC ATGTTAACTA TCCCCTTATT AGTCTTTAGC CTTCTCTTTA CAATCTCTTT 180 TTTCACTATG TGTTTCCTTT AATGCTGCAG AATTACCCTT ATCTGAAGTT TGTTCACTTG 2010 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTCACTATG TGTTTCCTTT AATGCTGCAG AATTACCCTT ATCTGAAGTT TGTTCACTTG 240 CACTAATAGG AGTGACTAAA ATTTCATTCT TGTCAGTTGA ACTGGAAGCA AAATTTGTAA 1950 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CACTAATAGG AGTGACTAAA ATTTCATTCT TGTCAGTTGA ACTGGAAGCA AAATTTGTAA 300 CATCACTTGT CTTTTCTTGT TTGTTGTTGT TGGTGGTGTT GGAAGACACC ATAGTGGTCT 1890 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATCACTTGT CTTTTCTTGT TTGTTGTTGT TGGTGGTGTT GGAAGACACC ATAGTGGTCT 360 TGTTTGGTGA TTCTACAGAG ACTTCTTTGA GGCTCATTTT AGGTAAGTCC TCCTTCTTGA 1830 |||||||||| |||||||||| |||||||||| |||||||||| || TGTTTGGTGA TTCTACAGAG ACTTCTTTGA GGCTCATTTT AG........ .......... 402 CATCATTGTG ATTAGTGGCT TCTTCATGAA ACTTCTCTTC ATCATTGGAT GGTTTCTGTA 1770 .......... .......... .......... .......... .......... .......... 402 TAACGTTGCA ATCAAAGACA AAGTATGAAT TTCGTTAAGG ATGTTCTAGA TTCAACATAC 1710 .......... .......... .......... .......... .......... .......... 402 ACGTATAGTT TATTATATAT GCGGTTTATT TTTCCTGGCA AAGGATGTTC AACTAACCAC 1650 .......... .......... .......... .......... .......... .......... 402 CGTTGAGCCT ATGTGACTCC GTATTACATT ATTTTCACAA GCACAAAAAT ATGATATAAT 1590 .......... .......... .......... .......... .......... .......... 402 GAATGTAACA AGAAAAGACC ATCTATTTAT GCTGTTTCAA AGAGAGGGTA AGTTTTATGT 1530 .......... .......... .......... .......... .......... .......... 402 ACTGATAAGT GCGAAAATAG GAGAACCTAT TCTCTAAAGG GTGGTTTGGT TTATCATACT 1470 .......... .......... .......... .......... .......... .......... 402 AACAAAAATA ATCCTACCAT ACTGTCAGTA TATATAACTT AAGTAATTGA AGGTATCATT 1410 .......... .......... .......... .......... .......... .......... 402 TGATCCAGTC TATATAAACG TACCGTTTTA GCATCTGTAT GATGAAGTTG GTCTGATGCA 1350 .......... .......... .......... .......... .......... .......... 402 GACTCAACTA ATGAAGTTCT AGACATTCTT GGACTTGGAC TTTCACCTAT TTGTTCCTCC 1290 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .ACTCAACTA ATGAAGTTCT AGACATTCTT GGACTTGGAC TTTCACCTAT TTGTTCCTCC 461 CTGTCAAAGT TCAACAGAGG GCCTTGACCT GTTGAGGACT TTGGTTTGAG TACGGACTTT 1230 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGTCAAAGT TCAACAGAGG GCCTTGACCT GTTGAGGACT TTGGTTTGAG TACGGACTTT 521 GGTGATGATG AACAACT 1213 |||||||||| ||||||| GGTGATGATG AACAACT 538 hqPGS_C06HBa0054K13.1-4-_SGN-E256700+ (2249 1848,1348 1213) ******************************************************************************** EST sequence 36 +strand 519 n (File: SGN-E392266+) 1 TTACAAATGA AAATTGAGTT ACACATTTAA GGAGTCTCAT GGGAAAAGAA GAAACAAACT 61 ATGTTGTTTG AACTCTCCTA AAATATCCCT CGGTGTTTTT GAAGAGTCTG AACAATATAG 121 AAAACAAGTG CATGTTAACT ATCCCCTTAT TAGTCTTTAG CCTTCTCTTT ACAATCTCTT 181 TTTTCACTAT GTGTTTCCTT TAATGCTGCA GAATTACCCT TATCTGAAGT TTGTTCACTT 241 GCACTAATAG GAGTGACTAA AATTTCATTC TTGTCAGTTG AACTGGAAGC AAAATTTGTA 301 ACATCACTTG TCTTTTCTTG TTTGTTGTTG TTGGTGGTGT TGGAAGACAC CATAGTGGTC 361 TTGTTTGGTG ATTCTACAGA GACTTCTTTG AGGCTCATTT TAGACTCAAC TAATGGGGGG 421 GGGGGGGGGG CTTGAACTTG AACTTTCACC TATTTGTTCC TCCCTGTCAA AGTTCAACAG 481 AAGGCCTTGA CCTGTTGAGG ACTTTTGTTT TGAGTTACG Predicted gene structure (within gDNA segment 2850 to 498): Exon 1 2250 1848 ( 403 n); cDNA 1 403 ( 403 n); score: 1.000 Intron 1 1847 1349 ( 499 n); Pd: 0.999 (s: 1.00), Pa: 0.909 (s: 0.66) Exon 2 1348 1239 ( 110 n); cDNA 404 515 ( 112 n); score: 0.809 MATCH C06HBa0054K13.1-4- SGN-E392266+ 0.959 513 0.988 C PGS_C06HBa0054K13.1-4-_SGN-E392266+ (2250 1848,1348 1239) Alignment (genomic DNA sequence = upper lines): TTACAAATGA AAATTGAGTT ACACATTTAA GGAGTCTCAT GGGAAAAGAA GAAACAAACT 2191 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTACAAATGA AAATTGAGTT ACACATTTAA GGAGTCTCAT GGGAAAAGAA GAAACAAACT 60 ATGTTGTTTG AACTCTCCTA AAATATCCCT CGGTGTTTTT GAAGAGTCTG AACAATATAG 2131 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGTTGTTTG AACTCTCCTA AAATATCCCT CGGTGTTTTT GAAGAGTCTG AACAATATAG 120 AAAACAAGTG CATGTTAACT ATCCCCTTAT TAGTCTTTAG CCTTCTCTTT ACAATCTCTT 2071 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAACAAGTG CATGTTAACT ATCCCCTTAT TAGTCTTTAG CCTTCTCTTT ACAATCTCTT 180 TTTTCACTAT GTGTTTCCTT TAATGCTGCA GAATTACCCT TATCTGAAGT TTGTTCACTT 2011 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTTCACTAT GTGTTTCCTT TAATGCTGCA GAATTACCCT TATCTGAAGT TTGTTCACTT 240 GCACTAATAG GAGTGACTAA AATTTCATTC TTGTCAGTTG AACTGGAAGC AAAATTTGTA 1951 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCACTAATAG GAGTGACTAA AATTTCATTC TTGTCAGTTG AACTGGAAGC AAAATTTGTA 300 ACATCACTTG TCTTTTCTTG TTTGTTGTTG TTGGTGGTGT TGGAAGACAC CATAGTGGTC 1891 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACATCACTTG TCTTTTCTTG TTTGTTGTTG TTGGTGGTGT TGGAAGACAC CATAGTGGTC 360 TTGTTTGGTG ATTCTACAGA GACTTCTTTG AGGCTCATTT TAGGTAAGTC CTCCTTCTTG 1831 |||||||||| |||||||||| |||||||||| |||||||||| ||| TTGTTTGGTG ATTCTACAGA GACTTCTTTG AGGCTCATTT TAG....... .......... 403 ACATCATTGT GATTAGTGGC TTCTTCATGA AACTTCTCTT CATCATTGGA TGGTTTCTGT 1771 .......... .......... .......... .......... .......... .......... 403 ATAACGTTGC AATCAAAGAC AAAGTATGAA TTTCGTTAAG GATGTTCTAG ATTCAACATA 1711 .......... .......... .......... .......... .......... .......... 403 CACGTATAGT TTATTATATA TGCGGTTTAT TTTTCCTGGC AAAGGATGTT CAACTAACCA 1651 .......... .......... .......... .......... .......... .......... 403 CCGTTGAGCC TATGTGACTC CGTATTACAT TATTTTCACA AGCACAAAAA TATGATATAA 1591 .......... .......... .......... .......... .......... .......... 403 TGAATGTAAC AAGAAAAGAC CATCTATTTA TGCTGTTTCA AAGAGAGGGT AAGTTTTATG 1531 .......... .......... .......... .......... .......... .......... 403 TACTGATAAG TGCGAAAATA GGAGAACCTA TTCTCTAAAG GGTGGTTTGG TTTATCATAC 1471 .......... .......... .......... .......... .......... .......... 403 TAACAAAAAT AATCCTACCA TACTGTCAGT ATATATAACT TAAGTAATTG AAGGTATCAT 1411 .......... .......... .......... .......... .......... .......... 403 TTGATCCAGT CTATATAAAC GTACCGTTTT AGCATCTGTA TGATGAAGTT GGTCTGATGC 1351 .......... .......... .......... .......... .......... .......... 403 AGACTCAACT AAT-GAAGTT CTAGACATTC TTGGACTTGG ACTTTCACCT ATTTGTTCCT 1292 |||||||| ||| | | | | ||| ||||| |||||||||| |||||||||| ..ACTCAACT AATGGGGGGG GGGGGGGGGC TTGAACTTGA ACTTTCACCT ATTTGTTCCT 461 CCCTGTCAAA GTTCAACAGA GGGCCTTGAC CTGTTGAGGA C-TTTGGTTT GAGT 1239 |||||||||| |||||||||| ||||||||| |||||||||| | |||| ||| |||| CCCTGTCAAA GTTCAACAGA AGGCCTTGAC CTGTTGAGGA CTTTTGTTTT GAGT 515 hqPGS_C06HBa0054K13.1-4-_SGN-E392266+ (2250 1848,1348 1239) ******************************************************************************** EST sequence 35 +strand 286 n (File: SGN-E375470+) 1 TGACTCCGTA TTACATTATT TTCACAAGCA CAAAAATATG ATATAATGAA TGTAACAAGA 61 AAAGACCATC TATTTATGCT GTTTCAAAGA GAGGGTAAGT TTTATGTACT GATAAGTGCG 121 AAAATAGGAG AACCTATTCT CTAAAGGGTG GTTTGGTTTA TCATACTAAC AAAAATAATC 181 CTACCATACT GTCAGTATAT ATAACTTAAG TAATTGAAGG TATCATTTGA TCCAGTCTAT 241 ATAAACGTAC CGTTTTAGCA TCTGTATGAT GAAGTTGGTC TGATGC Predicted gene structure (within gDNA segment 2236 to 741): Exon 1 1636 1351 ( 286 n); cDNA 1 286 ( 286 n); score: 1.000 MATCH C06HBa0054K13.1-4- SGN-E375470+ 1.000 286 1.000 C PGS_C06HBa0054K13.1-4-_SGN-E375470+ (1636 1351) Alignment (genomic DNA sequence = upper lines): TGACTCCGTA TTACATTATT TTCACAAGCA CAAAAATATG ATATAATGAA TGTAACAAGA 1577 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGACTCCGTA TTACATTATT TTCACAAGCA CAAAAATATG ATATAATGAA TGTAACAAGA 60 AAAGACCATC TATTTATGCT GTTTCAAAGA GAGGGTAAGT TTTATGTACT GATAAGTGCG 1517 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAGACCATC TATTTATGCT GTTTCAAAGA GAGGGTAAGT TTTATGTACT GATAAGTGCG 120 AAAATAGGAG AACCTATTCT CTAAAGGGTG GTTTGGTTTA TCATACTAAC AAAAATAATC 1457 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAATAGGAG AACCTATTCT CTAAAGGGTG GTTTGGTTTA TCATACTAAC AAAAATAATC 180 CTACCATACT GTCAGTATAT ATAACTTAAG TAATTGAAGG TATCATTTGA TCCAGTCTAT 1397 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTACCATACT GTCAGTATAT ATAACTTAAG TAATTGAAGG TATCATTTGA TCCAGTCTAT 240 ATAAACGTAC CGTTTTAGCA TCTGTATGAT GAAGTTGGTC TGATGC 1351 |||||||||| |||||||||| |||||||||| |||||||||| |||||| ATAAACGTAC CGTTTTAGCA TCTGTATGAT GAAGTTGGTC TGATGC 286 hqPGS_C06HBa0054K13.1-4-_SGN-E375470+ (1636 1351) ******************************************************************************** EST sequence 1 +strand 555 n (File: SGN-E211927+) 1 CTATTCCACT TATCACCATT TTCTTCATTT CTCAATAATC CCACTTTTAA GTTCTTTCCC 61 AGTTACTATT AACACAAATA TTTAAGAAAA ATCTCAACTT TTTTGTTGAA TACTTGTAAT 121 AAGCAGAAAT GGATTTTGTG TACAAGAACC CATCAGCTCT TATTGAGGAA AGAGTAAAAG 181 ATTTGTTGTC TCGGATGACA CTTGAAGAAA AAATAGGCCA AATGACTCAG ATCGAACGCA 241 GTGTTGCTAC CCCCTCTGTC ATTACTGACC TTTCTATAGG GAGTATACTC AGTGTTGGAG 301 GCAGTGCGCC ATTTGAGGAT GCTCCATCGG AAGCTTGGGC AGATATGGTT GACGGATTTC 361 AAAAGGCTGC GCTGGAATCA CGGCTTGGGA TTCCGCTTCT TTATGGAGTT GACGCTATTC 421 ATGGCAATAA CAATGTTTAT GGTGCTACCG TTTTTCCACA AAATGTGGGC CTTGGAGCCA 481 CCAGAGATGC AGACTTGGTT CAGAAGATGG GATTGTGACT GCTCTTGAAG TCAGGGCTTG 541 TGGCATTAAC TATAC Predicted gene structure (within gDNA segment 3754 to 7063): Exon 1 4354 4632 ( 279 n); cDNA 1 279 ( 279 n); score: 1.000 Intron 1 4633 6083 (1451 n); Pd: 1.000 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 2 6084 6288 ( 205 n); cDNA 280 484 ( 205 n); score: 1.000 Intron 2 6289 6381 ( 93 n); Pd: 0.992 (s: 1.00), Pa: 0.884 (s: 0.98) Exon 3 6382 6453 ( 72 n); cDNA 485 555 ( 71 n); score: 0.986 MATCH C06HBa0054K13.1-4+ SGN-E211927+ 0.998 556 1.002 C PGS_C06HBa0054K13.1-4+_SGN-E211927+ (4354 4632,6084 6288,6382 6453) Alignment (genomic DNA sequence = upper lines): CTATTCCACT TATCACCATT TTCTTCATTT CTCAATAATC CCACTTTTAA GTTCTTTCCC 4413 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTATTCCACT TATCACCATT TTCTTCATTT CTCAATAATC CCACTTTTAA GTTCTTTCCC 60 AGTTACTATT AACACAAATA TTTAAGAAAA ATCTCAACTT TTTTGTTGAA TACTTGTAAT 4473 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTTACTATT AACACAAATA TTTAAGAAAA ATCTCAACTT TTTTGTTGAA TACTTGTAAT 120 AAGCAGAAAT GGATTTTGTG TACAAGAACC CATCAGCTCT TATTGAGGAA AGAGTAAAAG 4533 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGCAGAAAT GGATTTTGTG TACAAGAACC CATCAGCTCT TATTGAGGAA AGAGTAAAAG 180 ATTTGTTGTC TCGGATGACA CTTGAAGAAA AAATAGGCCA AATGACTCAG ATCGAACGCA 4593 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTTGTTGTC TCGGATGACA CTTGAAGAAA AAATAGGCCA AATGACTCAG ATCGAACGCA 240 GTGTTGCTAC CCCCTCTGTC ATTACTGACC TTTCTATAGG TATGCCTTTT TTTCCCTCTT 4653 |||||||||| |||||||||| |||||||||| ||||||||| GTGTTGCTAC CCCCTCTGTC ATTACTGACC TTTCTATAG. .......... .......... 279 TGCCCTAAAA ATAATAATGA AGGTTTCTGA GTTGGAGTCG GGATTTGAAG CTTATGAATT 4713 .......... .......... .......... .......... .......... .......... 279 TGGGAAAATT TAGTTCATTT TAAGTTTTTG AGTTTGTAGG TTAGTAGGTA GTTGAGAATT 4773 .......... .......... .......... .......... .......... .......... 279 GCCTTGTTTT TAAGGGTTTA GGTTTATTTG TGTCTGTCGT TGTATTAGCC GTATTAGCAG 4833 .......... .......... .......... .......... .......... .......... 279 TTTTAGTTTT TGATATCTAT CATCATTTGT TTGTTGTGTT TGTGTTACTG CACTGCTTTT 4893 .......... .......... .......... .......... .......... .......... 279 CTCGTATTAG TGTTATGTTC TCTTGTTCTT TACATCTGAA ATTGGTGAGG GTCTTTCGGG 4953 .......... .......... .......... .......... .......... .......... 279 AACAACCTCT CTATCTTCAC GGGACAGTGA TGAAGTATGC TTATACTCTA CTCTCCCTAA 5013 .......... .......... .......... .......... .......... .......... 279 ACCCCATGAG TGGGATTTCA TTCGGTATGT TGTTGGTGTT GTTAAAGTAT TGAGTTCTAA 5073 .......... .......... .......... .......... .......... .......... 279 ACGAAATTTA CACATATTCA TCAGACAAAA ACGAAATTTG GATAAAAGCT ATTGAGTTAG 5133 .......... .......... .......... .......... .......... .......... 279 AACCAAAGTG CTAGGTCCAC GCCAGTCAAG GTGATAGATT AAATTTGTTG TTGGAGTAGA 5193 .......... .......... .......... .......... .......... .......... 279 TATAAGTGTG ATATTTAGAG CACTTTATTT AGCATTGGAA TGAAATCAAC CTGGATAGAG 5253 .......... .......... .......... .......... .......... .......... 279 AATAATCAAG ATAAATAATA GGTTTAAGTT ATATACACTG ACGAGGTAAC ATCAGTGTAG 5313 .......... .......... .......... .......... .......... .......... 279 TTTAACCTGT TACATTAGGT TGCTTACCAT TTGGTATAAC TTATAAGTTA CCAATGAATG 5373 .......... .......... .......... .......... .......... .......... 279 ATTATTAAGT AGAGTTACAT GCAATGACCT GGTTGTGCAA CTATTCTATT CCATGCCTGT 5433 .......... .......... .......... .......... .......... .......... 279 GTATAGAACG AGAGCTCATA AATGGATTCA TTTAGGCGTT ATTAACTACC TTATAAGCAT 5493 .......... .......... .......... .......... .......... .......... 279 TGTGTTTAGC AGGCTTTATT TAAGCGTTTA TCGGAAACAT CTCTATCTCT ACGAGGTAGG 5553 .......... .......... .......... .......... .......... .......... 279 GTAAGGTCTG TATACACTCT ACCCTTTCGA GATCCACTTG GTGGGATTGC ATTTGGTATG 5613 .......... .......... .......... .......... .......... .......... 279 TTGTTGTTGT AATTGCCTTA TAAAAACTAA GGTGGTTCTA ACTAGTTGGG TAAGTGTAAG 5673 .......... .......... .......... .......... .......... .......... 279 ATTTAGTTAA CCCCTTACTC AGCATTGGAT TGAAATGGAC TTGAATAGAG TGGATGGGTA 5733 .......... .......... .......... .......... .......... .......... 279 TATAGGATGC ATTTAGGTGA TTCTAATTAG TTGGGATAAG CTAGTTATCC ATGTAGAGGG 5793 .......... .......... .......... .......... .......... .......... 279 ACAAGTGTGA GATTCAGAGA ATCCTTTATT TTGAATTGAA TTGAAATGAG ATGAAATGAA 5853 .......... .......... .......... .......... .......... .......... 279 CTGAATAGAG TGGAATGCAT ATAGATGACT CTTTTAGTTG ATACTAACTG GTTGCTGTTA 5913 .......... .......... .......... .......... .......... .......... 279 AACTAGCTAT GTATTTAGGA TAAGATTGGG ACTTTGAGAA CACTTATAAG ACGAAATGGA 5973 .......... .......... .......... .......... .......... .......... 279 CCTAAATGGA GAGGAACAGG TATAGAGGAT TCTATTCCCG GTCCTAAGAT GTTCTGGAAT 6033 .......... .......... .......... .......... .......... .......... 279 TGTGACATAT TGCTTTGCTG AAATTTATTT GAACCTTTTT CGTGGCGCAG GGAGTATACT 6093 |||||||||| .......... .......... .......... .......... .......... GGAGTATACT 289 CAGTGTTGGA GGCAGTGCGC CATTTGAGGA TGCTCCATCG GAAGCTTGGG CAGATATGGT 6153 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAGTGTTGGA GGCAGTGCGC CATTTGAGGA TGCTCCATCG GAAGCTTGGG CAGATATGGT 349 TGACGGATTT CAAAAGGCTG CGCTGGAATC ACGGCTTGGG ATTCCGCTTC TTTATGGAGT 6213 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGACGGATTT CAAAAGGCTG CGCTGGAATC ACGGCTTGGG ATTCCGCTTC TTTATGGAGT 409 TGACGCTATT CATGGCAATA ACAATGTTTA TGGTGCTACC GTTTTTCCAC AAAATGTGGG 6273 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGACGCTATT CATGGCAATA ACAATGTTTA TGGTGCTACC GTTTTTCCAC AAAATGTGGG 469 CCTTGGAGCC ACCAGGTTGA ATTAATGTCA AGCTTTGATC TTTATTACCA ATTCTTATTG 6333 |||||||||| ||||| CCTTGGAGCC ACCAG..... .......... .......... .......... .......... 484 ATAACTGGCA TTTAAGATCA ATACCTAAAT TAGATAAATA TCGAGCAGAG ATGCAGACTT 6393 || |||||||||| .......... .......... .......... .......... ........AG ATGCAGACTT 496 GGTTCAGAAG ATTGGGATTG TGACTGCTCT TGAAGTCAGG GCTTGTGGCA TTAACTATAC 6453 |||||||||| | |||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGTTCAGAAG A-TGGGATTG TGACTGCTCT TGAAGTCAGG GCTTGTGGCA TTAACTATAC 555 hqPGS_C06HBa0054K13.1-4+_SGN-E211927+ (4354 4632,6084 6288,6382 6453) ******************************************************************************** EST sequence 3 +strand 706 n (File: SGN-E314778+) 1 CACTTATCAC CATTTTCTTC ATTTCTCAAT AATCCCACTT TTAAGTTCTT TCCCAGTTAC 61 TATTAACACA AATATTTAAG AAAAATCTCA ACTTTTTTGT TGAATACTTG TAATAAGCAG 121 AAATGGATTT TGTGTACAAG AACCCATCAG CTCTTATTGA GGAAAGAGTA AAAGATTTGT 181 TGTCTCGGAT GACACTTGAA GAAAAAATAG GCCAAATGAC TCAGATCGAA CGCAGTGTTG 241 CTACCCCCTC TGTCATTACT GACCTTTCTA TAGGGAGTAT ACTCAGTGTT GGAGGCAGTG 301 CGCCATTTGA GGATGCTCCA TCGGAAGCTT GGGCAGATAT GGTTGACGGA TTTCAAAAGG 361 CTGCGCTGGA ATCACGGCTT GGGATTCCGC TTCTTTATGG AGTTGACGCT ATTCATGGCA 421 ATAACAATGT TTATGGTGCT ACCGTTTTTC CACAAAATGT GGGCCTTGGA GCCACCAGAG 481 ATGCAGACTT GGTTCAGAAG ATTGGGATTG TGACTGCTCT TGAAGTCAGG GCTTGTGGCA 541 TTAACTATAC TTTTGCTCCC TGTGTTGCTG TATGTAGAGA TCCCAGGTGG GGAAGATGCT 601 ATGAGAGTTA TGGCGAAGAC ACCGAACTTA TTANGAAGAT GACCTCAATT GTCACAGGCT 661 TGCAAGGGCA ACCACCTCCT GNATACCCCC CAAACTATCC TTTTCT Predicted gene structure (within gDNA segment 3760 to 8141): Exon 1 4360 4632 ( 273 n); cDNA 1 273 ( 273 n); score: 1.000 Intron 1 4633 6083 (1451 n); Pd: 1.000 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 2 6084 6288 ( 205 n); cDNA 274 478 ( 205 n); score: 1.000 Intron 2 6289 6381 ( 93 n); Pd: 0.992 (s: 1.00), Pa: 0.884 (s: 1.00) Exon 3 6382 6472 ( 91 n); cDNA 479 569 ( 91 n); score: 1.000 Intron 3 6473 7169 ( 697 n); Pd: 0.977 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 4 7170 7306 ( 137 n); cDNA 570 706 ( 137 n); score: 0.978 MATCH C06HBa0054K13.1-4+ SGN-E314778+ 0.996 706 1.000 C PGS_C06HBa0054K13.1-4+_SGN-E314778+ (4360 4632,6084 6288,6382 6472,7170 7306) Alignment (genomic DNA sequence = upper lines): CACTTATCAC CATTTTCTTC ATTTCTCAAT AATCCCACTT TTAAGTTCTT TCCCAGTTAC 4419 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CACTTATCAC CATTTTCTTC ATTTCTCAAT AATCCCACTT TTAAGTTCTT TCCCAGTTAC 60 TATTAACACA AATATTTAAG AAAAATCTCA ACTTTTTTGT TGAATACTTG TAATAAGCAG 4479 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATTAACACA AATATTTAAG AAAAATCTCA ACTTTTTTGT TGAATACTTG TAATAAGCAG 120 AAATGGATTT TGTGTACAAG AACCCATCAG CTCTTATTGA GGAAAGAGTA AAAGATTTGT 4539 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAATGGATTT TGTGTACAAG AACCCATCAG CTCTTATTGA GGAAAGAGTA AAAGATTTGT 180 TGTCTCGGAT GACACTTGAA GAAAAAATAG GCCAAATGAC TCAGATCGAA CGCAGTGTTG 4599 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTCTCGGAT GACACTTGAA GAAAAAATAG GCCAAATGAC TCAGATCGAA CGCAGTGTTG 240 CTACCCCCTC TGTCATTACT GACCTTTCTA TAGGTATGCC TTTTTTTCCC TCTTTGCCCT 4659 |||||||||| |||||||||| |||||||||| ||| CTACCCCCTC TGTCATTACT GACCTTTCTA TAG....... .......... .......... 273 AAAAATAATA ATGAAGGTTT CTGAGTTGGA GTCGGGATTT GAAGCTTATG AATTTGGGAA 4719 .......... .......... .......... .......... .......... .......... 273 AATTTAGTTC ATTTTAAGTT TTTGAGTTTG TAGGTTAGTA GGTAGTTGAG AATTGCCTTG 4779 .......... .......... .......... .......... .......... .......... 273 TTTTTAAGGG TTTAGGTTTA TTTGTGTCTG TCGTTGTATT AGCCGTATTA GCAGTTTTAG 4839 .......... .......... .......... .......... .......... .......... 273 TTTTTGATAT CTATCATCAT TTGTTTGTTG TGTTTGTGTT ACTGCACTGC TTTTCTCGTA 4899 .......... .......... .......... .......... .......... .......... 273 TTAGTGTTAT GTTCTCTTGT TCTTTACATC TGAAATTGGT GAGGGTCTTT CGGGAACAAC 4959 .......... .......... .......... .......... .......... .......... 273 CTCTCTATCT TCACGGGACA GTGATGAAGT ATGCTTATAC TCTACTCTCC CTAAACCCCA 5019 .......... .......... .......... .......... .......... .......... 273 TGAGTGGGAT TTCATTCGGT ATGTTGTTGG TGTTGTTAAA GTATTGAGTT CTAAACGAAA 5079 .......... .......... .......... .......... .......... .......... 273 TTTACACATA TTCATCAGAC AAAAACGAAA TTTGGATAAA AGCTATTGAG TTAGAACCAA 5139 .......... .......... .......... .......... .......... .......... 273 AGTGCTAGGT CCACGCCAGT CAAGGTGATA GATTAAATTT GTTGTTGGAG TAGATATAAG 5199 .......... .......... .......... .......... .......... .......... 273 TGTGATATTT AGAGCACTTT ATTTAGCATT GGAATGAAAT CAACCTGGAT AGAGAATAAT 5259 .......... .......... .......... .......... .......... .......... 273 CAAGATAAAT AATAGGTTTA AGTTATATAC ACTGACGAGG TAACATCAGT GTAGTTTAAC 5319 .......... .......... .......... .......... .......... .......... 273 CTGTTACATT AGGTTGCTTA CCATTTGGTA TAACTTATAA GTTACCAATG AATGATTATT 5379 .......... .......... .......... .......... .......... .......... 273 AAGTAGAGTT ACATGCAATG ACCTGGTTGT GCAACTATTC TATTCCATGC CTGTGTATAG 5439 .......... .......... .......... .......... .......... .......... 273 AACGAGAGCT CATAAATGGA TTCATTTAGG CGTTATTAAC TACCTTATAA GCATTGTGTT 5499 .......... .......... .......... .......... .......... .......... 273 TAGCAGGCTT TATTTAAGCG TTTATCGGAA ACATCTCTAT CTCTACGAGG TAGGGTAAGG 5559 .......... .......... .......... .......... .......... .......... 273 TCTGTATACA CTCTACCCTT TCGAGATCCA CTTGGTGGGA TTGCATTTGG TATGTTGTTG 5619 .......... .......... .......... .......... .......... .......... 273 TTGTAATTGC CTTATAAAAA CTAAGGTGGT TCTAACTAGT TGGGTAAGTG TAAGATTTAG 5679 .......... .......... .......... .......... .......... .......... 273 TTAACCCCTT ACTCAGCATT GGATTGAAAT GGACTTGAAT AGAGTGGATG GGTATATAGG 5739 .......... .......... .......... .......... .......... .......... 273 ATGCATTTAG GTGATTCTAA TTAGTTGGGA TAAGCTAGTT ATCCATGTAG AGGGACAAGT 5799 .......... .......... .......... .......... .......... .......... 273 GTGAGATTCA GAGAATCCTT TATTTTGAAT TGAATTGAAA TGAGATGAAA TGAACTGAAT 5859 .......... .......... .......... .......... .......... .......... 273 AGAGTGGAAT GCATATAGAT GACTCTTTTA GTTGATACTA ACTGGTTGCT GTTAAACTAG 5919 .......... .......... .......... .......... .......... .......... 273 CTATGTATTT AGGATAAGAT TGGGACTTTG AGAACACTTA TAAGACGAAA TGGACCTAAA 5979 .......... .......... .......... .......... .......... .......... 273 TGGAGAGGAA CAGGTATAGA GGATTCTATT CCCGGTCCTA AGATGTTCTG GAATTGTGAC 6039 .......... .......... .......... .......... .......... .......... 273 ATATTGCTTT GCTGAAATTT ATTTGAACCT TTTTCGTGGC GCAGGGAGTA TACTCAGTGT 6099 |||||| |||||||||| .......... .......... .......... .......... ....GGAGTA TACTCAGTGT 289 TGGAGGCAGT GCGCCATTTG AGGATGCTCC ATCGGAAGCT TGGGCAGATA TGGTTGACGG 6159 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGAGGCAGT GCGCCATTTG AGGATGCTCC ATCGGAAGCT TGGGCAGATA TGGTTGACGG 349 ATTTCAAAAG GCTGCGCTGG AATCACGGCT TGGGATTCCG CTTCTTTATG GAGTTGACGC 6219 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTTCAAAAG GCTGCGCTGG AATCACGGCT TGGGATTCCG CTTCTTTATG GAGTTGACGC 409 TATTCATGGC AATAACAATG TTTATGGTGC TACCGTTTTT CCACAAAATG TGGGCCTTGG 6279 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATTCATGGC AATAACAATG TTTATGGTGC TACCGTTTTT CCACAAAATG TGGGCCTTGG 469 AGCCACCAGG TTGAATTAAT GTCAAGCTTT GATCTTTATT ACCAATTCTT ATTGATAACT 6339 ||||||||| AGCCACCAG. .......... .......... .......... .......... .......... 478 GGCATTTAAG ATCAATACCT AAATTAGATA AATATCGAGC AGAGATGCAG ACTTGGTTCA 6399 |||||||| |||||||||| .......... .......... .......... .......... ..AGATGCAG ACTTGGTTCA 496 GAAGATTGGG ATTGTGACTG CTCTTGAAGT CAGGGCTTGT GGCATTAACT ATACTTTTGC 6459 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAGATTGGG ATTGTGACTG CTCTTGAAGT CAGGGCTTGT GGCATTAACT ATACTTTTGC 556 TCCCTGTGTT GCTGTAAGTT GAACGTGTTA CTTGTCCCTT TATTGTCTTT GTTTTAGGTC 6519 |||||||||| ||| TCCCTGTGTT GCT....... .......... .......... .......... .......... 569 AATTTCATGG ATGAATGAAG TAAAGGAAAC ATAAGACGTT GGACATATGT ACACTTAGAG 6579 .......... .......... .......... .......... .......... .......... 569 CAAGATGGAA ATAGGATACC CTAAGTATCA CATCAAAATT TATAATTTGA ATTCTTAATT 6639 .......... .......... .......... .......... .......... .......... 569 GGTCCTTCCG TTACAAATTT TTTGTCCGGT TTTGACTGGG CATTGAGTTA AAGAAAGTTG 6699 .......... .......... .......... .......... .......... .......... 569 CGAAAACTTA CAAATCTTGT GGTCTTAAGC TATAAATATG TAGAATTTAC CAAAATGCCC 6759 .......... .......... .......... .......... .......... .......... 569 TTTAATATTG TGTTCTTAAA CATGTCATGT GAGTGACAAT TAAAGAGTTG TCAAAAAAGA 6819 .......... .......... .......... .......... .......... .......... 569 AAAGATACAT TCTTTTTGAA ACGGACTAAA AAGAAAAGTA GGACAAACAA ATTGAAACAG 6879 .......... .......... .......... .......... .......... .......... 569 AGGGAGTAGT ATGTTGCTAA CTGAGACAAG AGAAACATGA TTTGTCGTTT TTCTTTTTGG 6939 .......... .......... .......... .......... .......... .......... 569 GAATTCTTGG TTAAAATTTT TATGTTCCCA GTACCTCGTA ACTGCTATCT CTCTAGAAGT 6999 .......... .......... .......... .......... .......... .......... 569 AGTACTTGTT TTTTTTTTGT TTGTTTGAGA AGATAAGCAG CTTGTATATT GATAAAGAGA 7059 .......... .......... .......... .......... .......... .......... 569 AACTATGTAG TACCAAGCTG ATGCTGAGCA ATACCTCTCT AGTTGTTATC TCTTTTTAAC 7119 .......... .......... .......... .......... .......... .......... 569 TCTATTGTCT TGAGGCATCT TGACTTCTTC ATTTAAATAA TGTGAAACAG GTATGTAGAG 7179 |||||||||| .......... .......... .......... .......... .......... GTATGTAGAG 579 ATCCCAGGTG GGGAAGATGC TATGAGAGTT ATGGCGAAGA CACCGAACTT ATTAGGAAGA 7239 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||| ||||| ATCCCAGGTG GGGAAGATGC TATGAGAGTT ATGGCGAAGA CACCGAACTT ATTANGAAGA 639 TGACCTCAAT TGTCACAGGC TTGCAAGGGC AACCACCTCC TGGATACCCC CAAAACTATC 7299 |||||||||| |||||||||| |||||||||| |||||||||| || ||||||| | |||||||| TGACCTCAAT TGTCACAGGC TTGCAAGGGC AACCACCTCC TGNATACCCC CCAAACTATC 699 CTTTTCT 7306 ||||||| CTTTTCT 706 hqPGS_C06HBa0054K13.1-4+_SGN-E314778+ (4360 4632,6084 6288,6382 6472,7170 7306) ******************************************************************************** EST sequence 4 +strand 555 n (File: SGN-E314534+) 1 TTATCACCAT TTTCATCATT TCTCAATAAT CCCACTTTTA AGTTCTTTCC CAGGTACTAT 61 TAACACAAAT GATTTAAGAA AAATCTCAAC TTTTTTGTTG AATACTTGTA ATAAGCAGAA 121 ATGGATTTTG TGTACAAGAA CCCATCAGCT CTTATTGAGG AAAGAGTAAA AGATTTGTTG 181 TCTCGGATGA CACTTGAAGA AAAAATAGGC CGAATGACTC ATATCGAACG CAGTGTTGCT 241 ACCCCCTCTG TCATTACTGA CCTTTCTATA CGGAGTATAC TCAGTGTTGG AGGCAGAGCG 301 CCATTTGAGG ATGCTCCATC GGAAGCTTGG GCACATATGG TTGACGGATT TCGAAAAGCT 361 GCGCTGGAAT CACGGCTTGG GATTCCGCTT CTTTATGGAG TTGACGCTAT TCGTGGCAAT 421 AACAATGTTT ATGGTGCTAC CGTTTTTCCA CAAAATGTGG GCCTTGGAGC CACCAGAGAT 481 GCCGACTTGG TTCAGAAGAT TGGGATTGTG ACTGCTCTTG CAGTCAAGGC TTGTGGCATT 541 AACTATACTT TTGCT Predicted gene structure (within gDNA segment 3628 to 7070): Exon 1 4363 4632 ( 270 n); cDNA 1 271 ( 271 n); score: 0.972 Intron 1 4633 6083 (1451 n); Pd: 1.000 (s: 0.96), Pa: 0.998 (s: 0.98) Exon 2 6084 6288 ( 205 n); cDNA 272 476 ( 205 n); score: 0.976 Intron 2 6289 6381 ( 93 n); Pd: 0.992 (s: 1.00), Pa: 0.884 (s: 0.96) Exon 3 6382 6460 ( 79 n); cDNA 477 555 ( 79 n); score: 0.962 MATCH C06HBa0054K13.1-4+ SGN-E314534+ 0.972 554 0.998 C PGS_C06HBa0054K13.1-4+_SGN-E314534+ (4363 4632,6084 6288,6382 6460) Alignment (genomic DNA sequence = upper lines): TTATCACCAT TTTCTTCATT TCTCAATAAT CCCACTTTTA AGTTCTTTCC CAGTTACTAT 4422 |||||||||| |||| ||||| |||||||||| |||||||||| |||||||||| ||| |||||| TTATCACCAT TTTCATCATT TCTCAATAAT CCCACTTTTA AGTTCTTTCC CAGGTACTAT 60 TAACACAAAT -ATTTAAGAA AAATCTCAAC TTTTTTGTTG AATACTTGTA ATAAGCAGAA 4481 |||||||||| ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAACACAAAT GATTTAAGAA AAATCTCAAC TTTTTTGTTG AATACTTGTA ATAAGCAGAA 120 ATGGATTTTG TGTACAAGAA CCCATCAGCT CTTATTGAGG AAAGAGTAAA AGATTTGTTG 4541 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGGATTTTG TGTACAAGAA CCCATCAGCT CTTATTGAGG AAAGAGTAAA AGATTTGTTG 180 TCTCGGATGA CACTTGAAGA AAAAATAGGC CAAATGACTC AGATCGAACG CAGTGTTGCT 4601 |||||||||| |||||||||| |||||||||| | |||||||| | |||||||| |||||||||| TCTCGGATGA CACTTGAAGA AAAAATAGGC CGAATGACTC ATATCGAACG CAGTGTTGCT 240 ACCCCCTCTG TCATTACTGA CCTTTCTATA GGTATGCCTT TTTTTCCCTC TTTGCCCTAA 4661 |||||||||| |||||||||| |||||||||| ACCCCCTCTG TCATTACTGA CCTTTCTATA C......... .......... .......... 271 AAATAATAAT GAAGGTTTCT GAGTTGGAGT CGGGATTTGA AGCTTATGAA TTTGGGAAAA 4721 .......... .......... .......... .......... .......... .......... 271 TTTAGTTCAT TTTAAGTTTT TGAGTTTGTA GGTTAGTAGG TAGTTGAGAA TTGCCTTGTT 4781 .......... .......... .......... .......... .......... .......... 271 TTTAAGGGTT TAGGTTTATT TGTGTCTGTC GTTGTATTAG CCGTATTAGC AGTTTTAGTT 4841 .......... .......... .......... .......... .......... .......... 271 TTTGATATCT ATCATCATTT GTTTGTTGTG TTTGTGTTAC TGCACTGCTT TTCTCGTATT 4901 .......... .......... .......... .......... .......... .......... 271 AGTGTTATGT TCTCTTGTTC TTTACATCTG AAATTGGTGA GGGTCTTTCG GGAACAACCT 4961 .......... .......... .......... .......... .......... .......... 271 CTCTATCTTC ACGGGACAGT GATGAAGTAT GCTTATACTC TACTCTCCCT AAACCCCATG 5021 .......... .......... .......... .......... .......... .......... 271 AGTGGGATTT CATTCGGTAT GTTGTTGGTG TTGTTAAAGT ATTGAGTTCT AAACGAAATT 5081 .......... .......... .......... .......... .......... .......... 271 TACACATATT CATCAGACAA AAACGAAATT TGGATAAAAG CTATTGAGTT AGAACCAAAG 5141 .......... .......... .......... .......... .......... .......... 271 TGCTAGGTCC ACGCCAGTCA AGGTGATAGA TTAAATTTGT TGTTGGAGTA GATATAAGTG 5201 .......... .......... .......... .......... .......... .......... 271 TGATATTTAG AGCACTTTAT TTAGCATTGG AATGAAATCA ACCTGGATAG AGAATAATCA 5261 .......... .......... .......... .......... .......... .......... 271 AGATAAATAA TAGGTTTAAG TTATATACAC TGACGAGGTA ACATCAGTGT AGTTTAACCT 5321 .......... .......... .......... .......... .......... .......... 271 GTTACATTAG GTTGCTTACC ATTTGGTATA ACTTATAAGT TACCAATGAA TGATTATTAA 5381 .......... .......... .......... .......... .......... .......... 271 GTAGAGTTAC ATGCAATGAC CTGGTTGTGC AACTATTCTA TTCCATGCCT GTGTATAGAA 5441 .......... .......... .......... .......... .......... .......... 271 CGAGAGCTCA TAAATGGATT CATTTAGGCG TTATTAACTA CCTTATAAGC ATTGTGTTTA 5501 .......... .......... .......... .......... .......... .......... 271 GCAGGCTTTA TTTAAGCGTT TATCGGAAAC ATCTCTATCT CTACGAGGTA GGGTAAGGTC 5561 .......... .......... .......... .......... .......... .......... 271 TGTATACACT CTACCCTTTC GAGATCCACT TGGTGGGATT GCATTTGGTA TGTTGTTGTT 5621 .......... .......... .......... .......... .......... .......... 271 GTAATTGCCT TATAAAAACT AAGGTGGTTC TAACTAGTTG GGTAAGTGTA AGATTTAGTT 5681 .......... .......... .......... .......... .......... .......... 271 AACCCCTTAC TCAGCATTGG ATTGAAATGG ACTTGAATAG AGTGGATGGG TATATAGGAT 5741 .......... .......... .......... .......... .......... .......... 271 GCATTTAGGT GATTCTAATT AGTTGGGATA AGCTAGTTAT CCATGTAGAG GGACAAGTGT 5801 .......... .......... .......... .......... .......... .......... 271 GAGATTCAGA GAATCCTTTA TTTTGAATTG AATTGAAATG AGATGAAATG AACTGAATAG 5861 .......... .......... .......... .......... .......... .......... 271 AGTGGAATGC ATATAGATGA CTCTTTTAGT TGATACTAAC TGGTTGCTGT TAAACTAGCT 5921 .......... .......... .......... .......... .......... .......... 271 ATGTATTTAG GATAAGATTG GGACTTTGAG AACACTTATA AGACGAAATG GACCTAAATG 5981 .......... .......... .......... .......... .......... .......... 271 GAGAGGAACA GGTATAGAGG ATTCTATTCC CGGTCCTAAG ATGTTCTGGA ATTGTGACAT 6041 .......... .......... .......... .......... .......... .......... 271 ATTGCTTTGC TGAAATTTAT TTGAACCTTT TTCGTGGCGC AGGGAGTATA CTCAGTGTTG 6101 |||||||| |||||||||| .......... .......... .......... .......... ..GGAGTATA CTCAGTGTTG 289 GAGGCAGTGC GCCATTTGAG GATGCTCCAT CGGAAGCTTG GGCAGATATG GTTGACGGAT 6161 ||||||| || |||||||||| |||||||||| |||||||||| |||| ||||| |||||||||| GAGGCAGAGC GCCATTTGAG GATGCTCCAT CGGAAGCTTG GGCACATATG GTTGACGGAT 349 TTCAAAAGGC TGCGCTGGAA TCACGGCTTG GGATTCCGCT TCTTTATGGA GTTGACGCTA 6221 ||| ||| || |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCGAAAAGC TGCGCTGGAA TCACGGCTTG GGATTCCGCT TCTTTATGGA GTTGACGCTA 409 TTCATGGCAA TAACAATGTT TATGGTGCTA CCGTTTTTCC ACAAAATGTG GGCCTTGGAG 6281 ||| |||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCGTGGCAA TAACAATGTT TATGGTGCTA CCGTTTTTCC ACAAAATGTG GGCCTTGGAG 469 CCACCAGGTT GAATTAATGT CAAGCTTTGA TCTTTATTAC CAATTCTTAT TGATAACTGG 6341 ||||||| CCACCAG... .......... .......... .......... .......... .......... 476 CATTTAAGAT CAATACCTAA ATTAGATAAA TATCGAGCAG AGATGCAGAC TTGGTTCAGA 6401 |||||| ||| |||||||||| .......... .......... .......... .......... AGATGCCGAC TTGGTTCAGA 496 AGATTGGGAT TGTGACTGCT CTTGAAGTCA GGGCTTGTGG CATTAACTAT ACTTTTGCT 6460 |||||||||| |||||||||| |||| ||||| ||||||||| |||||||||| ||||||||| AGATTGGGAT TGTGACTGCT CTTGCAGTCA AGGCTTGTGG CATTAACTAT ACTTTTGCT 555 hqPGS_C06HBa0054K13.1-4+_SGN-E314534+ (4363 4632,6084 6288,6382 6460) ******************************************************************************** EST sequence 13 +strand 663 n (File: SGN-E317820+) 1 TTTTCTTCAT TTCTCAATAA TCCCACTTTT AAGTTCTTTC CCAGTTACTA TTAACACAAA 61 TATTTAAGAA AAATCTCAAC TTTTTTGTTG AATACTTGTA ATAAGCAGAA ATGGATTTTG 121 TGTACAAGAA CCCATCAGCT CTTATTGAGG AAAGAGTAAA AGATTTGTTG TCTCGGATGA 181 CACTTGAAGA AAAAATAGGC CAAATGACTC AGATCGAACG CAGTGTTGCT ACCCCCTCTG 241 TCATTACTGA CCTTTCTATA GGGAGTATAC TCAGTGTTGG AGGCAGTGCG CCATTTGAGG 301 ATGCTCCATC GGAAGCTTGG GCAGATATGG TTGACGGATT TCAAAAGGCT GCGCTGGAAT 361 CACGGCTTGG GATTCCGCTT CTTTATGGAG TTGACGCTAT TCATGGCAAT AACAATGTTT 421 ATGGTGCTAC CGTTTTTCCA CAAAATGTGG GCCTTGGAGC CACCAGAGAT GCAGACTTGG 481 TTCAGAAGAT TGGGATTGTG ACTGCTCTTG AAGTCAGGGC TTGTGGCATT AACTATACTT 541 TTGCTCCCTG TGTTGCTGTA TGTAGAGATC CCAGGTGGGG AAGATGCTAT GAGAGTTATG 601 GCGAAGACAC CGAACTTATT ANGAAGATGA CCTCAATTGT CACAGGCTTG CAAGGGCAAC 661 CAC Predicted gene structure (within gDNA segment 3772 to 7885): Exon 1 4372 4632 ( 261 n); cDNA 1 261 ( 261 n); score: 1.000 Intron 1 4633 6083 (1451 n); Pd: 1.000 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 2 6084 6288 ( 205 n); cDNA 262 466 ( 205 n); score: 1.000 Intron 2 6289 6381 ( 93 n); Pd: 0.992 (s: 1.00), Pa: 0.884 (s: 1.00) Exon 3 6382 6472 ( 91 n); cDNA 467 557 ( 91 n); score: 1.000 Intron 3 6473 7169 ( 697 n); Pd: 0.977 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 4 7170 7275 ( 106 n); cDNA 558 663 ( 106 n); score: 0.991 MATCH C06HBa0054K13.1-4+ SGN-E317820+ 0.998 663 1.000 C PGS_C06HBa0054K13.1-4+_SGN-E317820+ (4372 4632,6084 6288,6382 6472,7170 7275) Alignment (genomic DNA sequence = upper lines): TTTTCTTCAT TTCTCAATAA TCCCACTTTT AAGTTCTTTC CCAGTTACTA TTAACACAAA 4431 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTTCTTCAT TTCTCAATAA TCCCACTTTT AAGTTCTTTC CCAGTTACTA TTAACACAAA 60 TATTTAAGAA AAATCTCAAC TTTTTTGTTG AATACTTGTA ATAAGCAGAA ATGGATTTTG 4491 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATTTAAGAA AAATCTCAAC TTTTTTGTTG AATACTTGTA ATAAGCAGAA ATGGATTTTG 120 TGTACAAGAA CCCATCAGCT CTTATTGAGG AAAGAGTAAA AGATTTGTTG TCTCGGATGA 4551 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTACAAGAA CCCATCAGCT CTTATTGAGG AAAGAGTAAA AGATTTGTTG TCTCGGATGA 180 CACTTGAAGA AAAAATAGGC CAAATGACTC AGATCGAACG CAGTGTTGCT ACCCCCTCTG 4611 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CACTTGAAGA AAAAATAGGC CAAATGACTC AGATCGAACG CAGTGTTGCT ACCCCCTCTG 240 TCATTACTGA CCTTTCTATA GGTATGCCTT TTTTTCCCTC TTTGCCCTAA AAATAATAAT 4671 |||||||||| |||||||||| | TCATTACTGA CCTTTCTATA G......... .......... .......... .......... 261 GAAGGTTTCT GAGTTGGAGT CGGGATTTGA AGCTTATGAA TTTGGGAAAA TTTAGTTCAT 4731 .......... .......... .......... .......... .......... .......... 261 TTTAAGTTTT TGAGTTTGTA GGTTAGTAGG TAGTTGAGAA TTGCCTTGTT TTTAAGGGTT 4791 .......... .......... .......... .......... .......... .......... 261 TAGGTTTATT TGTGTCTGTC GTTGTATTAG CCGTATTAGC AGTTTTAGTT TTTGATATCT 4851 .......... .......... .......... .......... .......... .......... 261 ATCATCATTT GTTTGTTGTG TTTGTGTTAC TGCACTGCTT TTCTCGTATT AGTGTTATGT 4911 .......... .......... .......... .......... .......... .......... 261 TCTCTTGTTC TTTACATCTG AAATTGGTGA GGGTCTTTCG GGAACAACCT CTCTATCTTC 4971 .......... .......... .......... .......... .......... .......... 261 ACGGGACAGT GATGAAGTAT GCTTATACTC TACTCTCCCT AAACCCCATG AGTGGGATTT 5031 .......... .......... .......... .......... .......... .......... 261 CATTCGGTAT GTTGTTGGTG TTGTTAAAGT ATTGAGTTCT AAACGAAATT TACACATATT 5091 .......... .......... .......... .......... .......... .......... 261 CATCAGACAA AAACGAAATT TGGATAAAAG CTATTGAGTT AGAACCAAAG TGCTAGGTCC 5151 .......... .......... .......... .......... .......... .......... 261 ACGCCAGTCA AGGTGATAGA TTAAATTTGT TGTTGGAGTA GATATAAGTG TGATATTTAG 5211 .......... .......... .......... .......... .......... .......... 261 AGCACTTTAT TTAGCATTGG AATGAAATCA ACCTGGATAG AGAATAATCA AGATAAATAA 5271 .......... .......... .......... .......... .......... .......... 261 TAGGTTTAAG TTATATACAC TGACGAGGTA ACATCAGTGT AGTTTAACCT GTTACATTAG 5331 .......... .......... .......... .......... .......... .......... 261 GTTGCTTACC ATTTGGTATA ACTTATAAGT TACCAATGAA TGATTATTAA GTAGAGTTAC 5391 .......... .......... .......... .......... .......... .......... 261 ATGCAATGAC CTGGTTGTGC AACTATTCTA TTCCATGCCT GTGTATAGAA CGAGAGCTCA 5451 .......... .......... .......... .......... .......... .......... 261 TAAATGGATT CATTTAGGCG TTATTAACTA CCTTATAAGC ATTGTGTTTA GCAGGCTTTA 5511 .......... .......... .......... .......... .......... .......... 261 TTTAAGCGTT TATCGGAAAC ATCTCTATCT CTACGAGGTA GGGTAAGGTC TGTATACACT 5571 .......... .......... .......... .......... .......... .......... 261 CTACCCTTTC GAGATCCACT TGGTGGGATT GCATTTGGTA TGTTGTTGTT GTAATTGCCT 5631 .......... .......... .......... .......... .......... .......... 261 TATAAAAACT AAGGTGGTTC TAACTAGTTG GGTAAGTGTA AGATTTAGTT AACCCCTTAC 5691 .......... .......... .......... .......... .......... .......... 261 TCAGCATTGG ATTGAAATGG ACTTGAATAG AGTGGATGGG TATATAGGAT GCATTTAGGT 5751 .......... .......... .......... .......... .......... .......... 261 GATTCTAATT AGTTGGGATA AGCTAGTTAT CCATGTAGAG GGACAAGTGT GAGATTCAGA 5811 .......... .......... .......... .......... .......... .......... 261 GAATCCTTTA TTTTGAATTG AATTGAAATG AGATGAAATG AACTGAATAG AGTGGAATGC 5871 .......... .......... .......... .......... .......... .......... 261 ATATAGATGA CTCTTTTAGT TGATACTAAC TGGTTGCTGT TAAACTAGCT ATGTATTTAG 5931 .......... .......... .......... .......... .......... .......... 261 GATAAGATTG GGACTTTGAG AACACTTATA AGACGAAATG GACCTAAATG GAGAGGAACA 5991 .......... .......... .......... .......... .......... .......... 261 GGTATAGAGG ATTCTATTCC CGGTCCTAAG ATGTTCTGGA ATTGTGACAT ATTGCTTTGC 6051 .......... .......... .......... .......... .......... .......... 261 TGAAATTTAT TTGAACCTTT TTCGTGGCGC AGGGAGTATA CTCAGTGTTG GAGGCAGTGC 6111 |||||||| |||||||||| |||||||||| .......... .......... .......... ..GGAGTATA CTCAGTGTTG GAGGCAGTGC 289 GCCATTTGAG GATGCTCCAT CGGAAGCTTG GGCAGATATG GTTGACGGAT TTCAAAAGGC 6171 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCCATTTGAG GATGCTCCAT CGGAAGCTTG GGCAGATATG GTTGACGGAT TTCAAAAGGC 349 TGCGCTGGAA TCACGGCTTG GGATTCCGCT TCTTTATGGA GTTGACGCTA TTCATGGCAA 6231 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCGCTGGAA TCACGGCTTG GGATTCCGCT TCTTTATGGA GTTGACGCTA TTCATGGCAA 409 TAACAATGTT TATGGTGCTA CCGTTTTTCC ACAAAATGTG GGCCTTGGAG CCACCAGGTT 6291 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||| TAACAATGTT TATGGTGCTA CCGTTTTTCC ACAAAATGTG GGCCTTGGAG CCACCAG... 466 GAATTAATGT CAAGCTTTGA TCTTTATTAC CAATTCTTAT TGATAACTGG CATTTAAGAT 6351 .......... .......... .......... .......... .......... .......... 466 CAATACCTAA ATTAGATAAA TATCGAGCAG AGATGCAGAC TTGGTTCAGA AGATTGGGAT 6411 |||||||||| |||||||||| |||||||||| .......... .......... .......... AGATGCAGAC TTGGTTCAGA AGATTGGGAT 496 TGTGACTGCT CTTGAAGTCA GGGCTTGTGG CATTAACTAT ACTTTTGCTC CCTGTGTTGC 6471 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTGACTGCT CTTGAAGTCA GGGCTTGTGG CATTAACTAT ACTTTTGCTC CCTGTGTTGC 556 TGTAAGTTGA ACGTGTTACT TGTCCCTTTA TTGTCTTTGT TTTAGGTCAA TTTCATGGAT 6531 | T......... .......... .......... .......... .......... .......... 557 GAATGAAGTA AAGGAAACAT AAGACGTTGG ACATATGTAC ACTTAGAGCA AGATGGAAAT 6591 .......... .......... .......... .......... .......... .......... 557 AGGATACCCT AAGTATCACA TCAAAATTTA TAATTTGAAT TCTTAATTGG TCCTTCCGTT 6651 .......... .......... .......... .......... .......... .......... 557 ACAAATTTTT TGTCCGGTTT TGACTGGGCA TTGAGTTAAA GAAAGTTGCG AAAACTTACA 6711 .......... .......... .......... .......... .......... .......... 557 AATCTTGTGG TCTTAAGCTA TAAATATGTA GAATTTACCA AAATGCCCTT TAATATTGTG 6771 .......... .......... .......... .......... .......... .......... 557 TTCTTAAACA TGTCATGTGA GTGACAATTA AAGAGTTGTC AAAAAAGAAA AGATACATTC 6831 .......... .......... .......... .......... .......... .......... 557 TTTTTGAAAC GGACTAAAAA GAAAAGTAGG ACAAACAAAT TGAAACAGAG GGAGTAGTAT 6891 .......... .......... .......... .......... .......... .......... 557 GTTGCTAACT GAGACAAGAG AAACATGATT TGTCGTTTTT CTTTTTGGGA ATTCTTGGTT 6951 .......... .......... .......... .......... .......... .......... 557 AAAATTTTTA TGTTCCCAGT ACCTCGTAAC TGCTATCTCT CTAGAAGTAG TACTTGTTTT 7011 .......... .......... .......... .......... .......... .......... 557 TTTTTTGTTT GTTTGAGAAG ATAAGCAGCT TGTATATTGA TAAAGAGAAA CTATGTAGTA 7071 .......... .......... .......... .......... .......... .......... 557 CCAAGCTGAT GCTGAGCAAT ACCTCTCTAG TTGTTATCTC TTTTTAACTC TATTGTCTTG 7131 .......... .......... .......... .......... .......... .......... 557 AGGCATCTTG ACTTCTTCAT TTAAATAATG TGAAACAGGT ATGTAGAGAT CCCAGGTGGG 7191 || |||||||||| |||||||||| .......... .......... .......... ........GT ATGTAGAGAT CCCAGGTGGG 579 GAAGATGCTA TGAGAGTTAT GGCGAAGACA CCGAACTTAT TAGGAAGATG ACCTCAATTG 7251 |||||||||| |||||||||| |||||||||| |||||||||| || ||||||| |||||||||| GAAGATGCTA TGAGAGTTAT GGCGAAGACA CCGAACTTAT TANGAAGATG ACCTCAATTG 639 TCACAGGCTT GCAAGGGCAA CCAC 7275 |||||||||| |||||||||| |||| TCACAGGCTT GCAAGGGCAA CCAC 663 hqPGS_C06HBa0054K13.1-4+_SGN-E317820+ (4372 4632,6084 6288,6382 6472,7170 7275) ******************************************************************************** EST sequence 25 +strand 565 n (File: SGN-E312056+) 1 AATAATCCCA CTTTTAAGTT CTTTCCCAGT TACTATTAAC ACAAATATTT AAGAAAAATC 61 TCAACTTTTT TGTTGAATAC TTGTAATAAG CAGAAATGGA TTTTGTGTAC AAGAACCCAT 121 CAGCTCTTAT TGAGGAAAGA GTAAAAGATT TGTTGTCTCG GATGACACTT GAAGAAAAAA 181 TAGGCCAAAT GACTCAGATC GAACGCAGTG TTGCTACCCC CTCTGTCATT ACTGACCTTT 241 CTATAGGGAG TATACTCAGT GTTGGAGGCA GTGCGCCATT TGAGGATGCT CCATCGGAAG 301 CTTGGGCAGA TATGGTTGAC GGATTTCAAA AGGCTGCGCT GGAATCACGG CTTGGGATTC 361 CGCTTCTTTA TGGAGTTGAC GCTATTCATG GCAATAACAA TGTTTATGGT GCTACCGTTT 421 TTCCACAAAA TGTGGGCCTT GGAGCCACCA GAGATGCAGA CTTGGTTCAG AAGATTGGGA 481 TTGTGACTGC TCTTGAAGTC AGGGCTTGTG GCATTAACTA TACTTTTGCT CCCTGTGTTG 541 CTGTATGTAG AGATCCCAGG TGGGG Predicted gene structure (within gDNA segment 3787 to 7285): Exon 1 4387 4632 ( 246 n); cDNA 1 246 ( 246 n); score: 1.000 Intron 1 4633 6083 (1451 n); Pd: 1.000 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 2 6084 6288 ( 205 n); cDNA 247 451 ( 205 n); score: 1.000 Intron 2 6289 6381 ( 93 n); Pd: 0.992 (s: 1.00), Pa: 0.884 (s: 1.00) Exon 3 6382 6472 ( 91 n); cDNA 452 542 ( 91 n); score: 1.000 Intron 3 6473 7169 ( 697 n); Pd: 0.977 (s: 1.00), Pa: 1.000 (s: 0) Exon 4 7170 7192 ( 23 n); cDNA 543 565 ( 23 n); score: 1.000 MATCH C06HBa0054K13.1-4+ SGN-E312056+ 1.000 565 1.000 C PGS_C06HBa0054K13.1-4+_SGN-E312056+ (4387 4632,6084 6288,6382 6472,7170 7192) Alignment (genomic DNA sequence = upper lines): AATAATCCCA CTTTTAAGTT CTTTCCCAGT TACTATTAAC ACAAATATTT AAGAAAAATC 4446 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATAATCCCA CTTTTAAGTT CTTTCCCAGT TACTATTAAC ACAAATATTT AAGAAAAATC 60 TCAACTTTTT TGTTGAATAC TTGTAATAAG CAGAAATGGA TTTTGTGTAC AAGAACCCAT 4506 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCAACTTTTT TGTTGAATAC TTGTAATAAG CAGAAATGGA TTTTGTGTAC AAGAACCCAT 120 CAGCTCTTAT TGAGGAAAGA GTAAAAGATT TGTTGTCTCG GATGACACTT GAAGAAAAAA 4566 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAGCTCTTAT TGAGGAAAGA GTAAAAGATT TGTTGTCTCG GATGACACTT GAAGAAAAAA 180 TAGGCCAAAT GACTCAGATC GAACGCAGTG TTGCTACCCC CTCTGTCATT ACTGACCTTT 4626 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAGGCCAAAT GACTCAGATC GAACGCAGTG TTGCTACCCC CTCTGTCATT ACTGACCTTT 240 CTATAGGTAT GCCTTTTTTT CCCTCTTTGC CCTAAAAATA ATAATGAAGG TTTCTGAGTT 4686 |||||| CTATAG.... .......... .......... .......... .......... .......... 246 GGAGTCGGGA TTTGAAGCTT ATGAATTTGG GAAAATTTAG TTCATTTTAA GTTTTTGAGT 4746 .......... .......... .......... .......... .......... .......... 246 TTGTAGGTTA GTAGGTAGTT GAGAATTGCC TTGTTTTTAA GGGTTTAGGT TTATTTGTGT 4806 .......... .......... .......... .......... .......... .......... 246 CTGTCGTTGT ATTAGCCGTA TTAGCAGTTT TAGTTTTTGA TATCTATCAT CATTTGTTTG 4866 .......... .......... .......... .......... .......... .......... 246 TTGTGTTTGT GTTACTGCAC TGCTTTTCTC GTATTAGTGT TATGTTCTCT TGTTCTTTAC 4926 .......... .......... .......... .......... .......... .......... 246 ATCTGAAATT GGTGAGGGTC TTTCGGGAAC AACCTCTCTA TCTTCACGGG ACAGTGATGA 4986 .......... .......... .......... .......... .......... .......... 246 AGTATGCTTA TACTCTACTC TCCCTAAACC CCATGAGTGG GATTTCATTC GGTATGTTGT 5046 .......... .......... .......... .......... .......... .......... 246 TGGTGTTGTT AAAGTATTGA GTTCTAAACG AAATTTACAC ATATTCATCA GACAAAAACG 5106 .......... .......... .......... .......... .......... .......... 246 AAATTTGGAT AAAAGCTATT GAGTTAGAAC CAAAGTGCTA GGTCCACGCC AGTCAAGGTG 5166 .......... .......... .......... .......... .......... .......... 246 ATAGATTAAA TTTGTTGTTG GAGTAGATAT AAGTGTGATA TTTAGAGCAC TTTATTTAGC 5226 .......... .......... .......... .......... .......... .......... 246 ATTGGAATGA AATCAACCTG GATAGAGAAT AATCAAGATA AATAATAGGT TTAAGTTATA 5286 .......... .......... .......... .......... .......... .......... 246 TACACTGACG AGGTAACATC AGTGTAGTTT AACCTGTTAC ATTAGGTTGC TTACCATTTG 5346 .......... .......... .......... .......... .......... .......... 246 GTATAACTTA TAAGTTACCA ATGAATGATT ATTAAGTAGA GTTACATGCA ATGACCTGGT 5406 .......... .......... .......... .......... .......... .......... 246 TGTGCAACTA TTCTATTCCA TGCCTGTGTA TAGAACGAGA GCTCATAAAT GGATTCATTT 5466 .......... .......... .......... .......... .......... .......... 246 AGGCGTTATT AACTACCTTA TAAGCATTGT GTTTAGCAGG CTTTATTTAA GCGTTTATCG 5526 .......... .......... .......... .......... .......... .......... 246 GAAACATCTC TATCTCTACG AGGTAGGGTA AGGTCTGTAT ACACTCTACC CTTTCGAGAT 5586 .......... .......... .......... .......... .......... .......... 246 CCACTTGGTG GGATTGCATT TGGTATGTTG TTGTTGTAAT TGCCTTATAA AAACTAAGGT 5646 .......... .......... .......... .......... .......... .......... 246 GGTTCTAACT AGTTGGGTAA GTGTAAGATT TAGTTAACCC CTTACTCAGC ATTGGATTGA 5706 .......... .......... .......... .......... .......... .......... 246 AATGGACTTG AATAGAGTGG ATGGGTATAT AGGATGCATT TAGGTGATTC TAATTAGTTG 5766 .......... .......... .......... .......... .......... .......... 246 GGATAAGCTA GTTATCCATG TAGAGGGACA AGTGTGAGAT TCAGAGAATC CTTTATTTTG 5826 .......... .......... .......... .......... .......... .......... 246 AATTGAATTG AAATGAGATG AAATGAACTG AATAGAGTGG AATGCATATA GATGACTCTT 5886 .......... .......... .......... .......... .......... .......... 246 TTAGTTGATA CTAACTGGTT GCTGTTAAAC TAGCTATGTA TTTAGGATAA GATTGGGACT 5946 .......... .......... .......... .......... .......... .......... 246 TTGAGAACAC TTATAAGACG AAATGGACCT AAATGGAGAG GAACAGGTAT AGAGGATTCT 6006 .......... .......... .......... .......... .......... .......... 246 ATTCCCGGTC CTAAGATGTT CTGGAATTGT GACATATTGC TTTGCTGAAA TTTATTTGAA 6066 .......... .......... .......... .......... .......... .......... 246 CCTTTTTCGT GGCGCAGGGA GTATACTCAG TGTTGGAGGC AGTGCGCCAT TTGAGGATGC 6126 ||| |||||||||| |||||||||| |||||||||| |||||||||| .......... .......GGA GTATACTCAG TGTTGGAGGC AGTGCGCCAT TTGAGGATGC 289 TCCATCGGAA GCTTGGGCAG ATATGGTTGA CGGATTTCAA AAGGCTGCGC TGGAATCACG 6186 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCCATCGGAA GCTTGGGCAG ATATGGTTGA CGGATTTCAA AAGGCTGCGC TGGAATCACG 349 GCTTGGGATT CCGCTTCTTT ATGGAGTTGA CGCTATTCAT GGCAATAACA ATGTTTATGG 6246 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTTGGGATT CCGCTTCTTT ATGGAGTTGA CGCTATTCAT GGCAATAACA ATGTTTATGG 409 TGCTACCGTT TTTCCACAAA ATGTGGGCCT TGGAGCCACC AGGTTGAATT AATGTCAAGC 6306 |||||||||| |||||||||| |||||||||| |||||||||| || TGCTACCGTT TTTCCACAAA ATGTGGGCCT TGGAGCCACC AG........ .......... 451 TTTGATCTTT ATTACCAATT CTTATTGATA ACTGGCATTT AAGATCAATA CCTAAATTAG 6366 .......... .......... .......... .......... .......... .......... 451 ATAAATATCG AGCAGAGATG CAGACTTGGT TCAGAAGATT GGGATTGTGA CTGCTCTTGA 6426 ||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... .....AGATG CAGACTTGGT TCAGAAGATT GGGATTGTGA CTGCTCTTGA 496 AGTCAGGGCT TGTGGCATTA ACTATACTTT TGCTCCCTGT GTTGCTGTAA GTTGAACGTG 6486 |||||||||| |||||||||| |||||||||| |||||||||| |||||| AGTCAGGGCT TGTGGCATTA ACTATACTTT TGCTCCCTGT GTTGCT.... .......... 542 TTACTTGTCC CTTTATTGTC TTTGTTTTAG GTCAATTTCA TGGATGAATG AAGTAAAGGA 6546 .......... .......... .......... .......... .......... .......... 542 AACATAAGAC GTTGGACATA TGTACACTTA GAGCAAGATG GAAATAGGAT ACCCTAAGTA 6606 .......... .......... .......... .......... .......... .......... 542 TCACATCAAA ATTTATAATT TGAATTCTTA ATTGGTCCTT CCGTTACAAA TTTTTTGTCC 6666 .......... .......... .......... .......... .......... .......... 542 GGTTTTGACT GGGCATTGAG TTAAAGAAAG TTGCGAAAAC TTACAAATCT TGTGGTCTTA 6726 .......... .......... .......... .......... .......... .......... 542 AGCTATAAAT ATGTAGAATT TACCAAAATG CCCTTTAATA TTGTGTTCTT AAACATGTCA 6786 .......... .......... .......... .......... .......... .......... 542 TGTGAGTGAC AATTAAAGAG TTGTCAAAAA AGAAAAGATA CATTCTTTTT GAAACGGACT 6846 .......... .......... .......... .......... .......... .......... 542 AAAAAGAAAA GTAGGACAAA CAAATTGAAA CAGAGGGAGT AGTATGTTGC TAACTGAGAC 6906 .......... .......... .......... .......... .......... .......... 542 AAGAGAAACA TGATTTGTCG TTTTTCTTTT TGGGAATTCT TGGTTAAAAT TTTTATGTTC 6966 .......... .......... .......... .......... .......... .......... 542 CCAGTACCTC GTAACTGCTA TCTCTCTAGA AGTAGTACTT GTTTTTTTTT TGTTTGTTTG 7026 .......... .......... .......... .......... .......... .......... 542 AGAAGATAAG CAGCTTGTAT ATTGATAAAG AGAAACTATG TAGTACCAAG CTGATGCTGA 7086 .......... .......... .......... .......... .......... .......... 542 GCAATACCTC TCTAGTTGTT ATCTCTTTTT AACTCTATTG TCTTGAGGCA TCTTGACTTC 7146 .......... .......... .......... .......... .......... .......... 542 TTCATTTAAA TAATGTGAAA CAGGTATGTA GAGATCCCAG GTGGGG 7192 ||||||| |||||||||| |||||| .......... .......... ...GTATGTA GAGATCCCAG GTGGGG 565 hqPGS_C06HBa0054K13.1-4+_SGN-E312056+ (4387 4632,6084 6288,6382 6472,7170 7192) ******************************************************************************** EST sequence 6 +strand 290 n (File: SGN-E337557+) 1 CTATTCCACT TATCACCATT TTCTTCATTT CTCAATAATC CCACTTTTAA GTTCTTTCCC 61 AGTTACTATT AACACAAATA TTTAAGAAAA ATCTCAACTT TTTTGTTGAA TACTTGTAAT 121 AAGCAGAAAT GGATTTTGTG TACAAGAACC CATCAGCTCT TATTGAGGAA AGAGTAAAAG 181 ATTTGTTGTC TCGGATGACA CTTGAAGAAA AAATAGGCCA AATGACTCAG ATCGAACGCA 241 GTGTTGCTAC CCCCTCTGTC ATTACTGACC TTTCTATAGG GAGTATACTC Predicted gene structure (within gDNA segment 3754 to 5343): Exon 1 4354 4632 ( 279 n); cDNA 1 279 ( 279 n); score: 1.000 MATCH C06HBa0054K13.1-4+ SGN-E337557+ 1.000 279 0.962 C PGS_C06HBa0054K13.1-4+_SGN-E337557+ (4354 4632) Alignment (genomic DNA sequence = upper lines): CTATTCCACT TATCACCATT TTCTTCATTT CTCAATAATC CCACTTTTAA GTTCTTTCCC 4413 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTATTCCACT TATCACCATT TTCTTCATTT CTCAATAATC CCACTTTTAA GTTCTTTCCC 60 AGTTACTATT AACACAAATA TTTAAGAAAA ATCTCAACTT TTTTGTTGAA TACTTGTAAT 4473 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTTACTATT AACACAAATA TTTAAGAAAA ATCTCAACTT TTTTGTTGAA TACTTGTAAT 120 AAGCAGAAAT GGATTTTGTG TACAAGAACC CATCAGCTCT TATTGAGGAA AGAGTAAAAG 4533 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGCAGAAAT GGATTTTGTG TACAAGAACC CATCAGCTCT TATTGAGGAA AGAGTAAAAG 180 ATTTGTTGTC TCGGATGACA CTTGAAGAAA AAATAGGCCA AATGACTCAG ATCGAACGCA 4593 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTTGTTGTC TCGGATGACA CTTGAAGAAA AAATAGGCCA AATGACTCAG ATCGAACGCA 240 GTGTTGCTAC CCCCTCTGTC ATTACTGACC TTTCTATAG 4632 |||||||||| |||||||||| |||||||||| ||||||||| GTGTTGCTAC CCCCTCTGTC ATTACTGACC TTTCTATAG 279 hqPGS_C06HBa0054K13.1-4+_SGN-E337557+ (4354 4632) ******************************************************************************** EST sequence 7 +strand 288 n (File: SGN-E337564+) 1 TATTCCACTT ATCACCATTT TCTTCATTTC TCAATAATCC CACTTTTAAG TTCTTTCCCA 61 GTTACTATTA ACACAAATAT TTAAGAAAAA TCTCAACTTT TTTGTTGAAT ACTTGTAATA 121 AGCAGAAATG GATTTTGTGT ACAAGAACCC ATCAGCTCTT ATTGAGGAAA GAGTAAAAGA 181 TTTGTTGTCT CGGATGACAC TTGAAGAAAA AATATGCCAA ATGACTCAGA TCGAACGCAG 241 TGTTGCTACC CCCTCTGTCA TTACTGACCT TTCTATAGGG AGTATACT Predicted gene structure (within gDNA segment 3755 to 5333): Exon 1 4355 4632 ( 278 n); cDNA 1 278 ( 278 n); score: 0.996 MATCH C06HBa0054K13.1-4+ SGN-E337564+ 0.996 278 0.965 C PGS_C06HBa0054K13.1-4+_SGN-E337564+ (4355 4632) Alignment (genomic DNA sequence = upper lines): TATTCCACTT ATCACCATTT TCTTCATTTC TCAATAATCC CACTTTTAAG TTCTTTCCCA 4414 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATTCCACTT ATCACCATTT TCTTCATTTC TCAATAATCC CACTTTTAAG TTCTTTCCCA 60 GTTACTATTA ACACAAATAT TTAAGAAAAA TCTCAACTTT TTTGTTGAAT ACTTGTAATA 4474 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTACTATTA ACACAAATAT TTAAGAAAAA TCTCAACTTT TTTGTTGAAT ACTTGTAATA 120 AGCAGAAATG GATTTTGTGT ACAAGAACCC ATCAGCTCTT ATTGAGGAAA GAGTAAAAGA 4534 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCAGAAATG GATTTTGTGT ACAAGAACCC ATCAGCTCTT ATTGAGGAAA GAGTAAAAGA 180 TTTGTTGTCT CGGATGACAC TTGAAGAAAA AATAGGCCAA ATGACTCAGA TCGAACGCAG 4594 |||||||||| |||||||||| |||||||||| |||| ||||| |||||||||| |||||||||| TTTGTTGTCT CGGATGACAC TTGAAGAAAA AATATGCCAA ATGACTCAGA TCGAACGCAG 240 TGTTGCTACC CCCTCTGTCA TTACTGACCT TTCTATAG 4632 |||||||||| |||||||||| |||||||||| |||||||| TGTTGCTACC CCCTCTGTCA TTACTGACCT TTCTATAG 278 hqPGS_C06HBa0054K13.1-4+_SGN-E337564+ (4355 4632) ******************************************************************************** EST sequence 27 +strand 786 n (File: SGN-E260789+) 1 GGAATCACGG CTTGGGATTC CGCTTCTTTA TGGAGTTGAC GCTATTCATG GCAATAACAA 61 TGTTTATGGT GCTACCGTTT TTCCACAAAA TGTGGGCCTT GGAGCCACCA GAGATGCAGA 121 CTTGGTTCAG AAGATTGGGA TTGTGACTGC TCTTGAAGTC AGGGCTTGTG GCATTAACTA 181 TACTTTTGCT CCCTGTGTTG CTGTATGTAG AGATCCCAGG TGGGGAAGAT GCTATGAGAG 241 TTATGGCGAA GACACCGAAC TTATTAGGAA GATGACCTCA ATTGTCACAG GCTTGCAAGG 301 GCAACCACCT CCTGGATACC CCCAAAACTA TCCTTTTCTA GCTGGAAGAG ACAAGGTTGT 361 TGCCTGTGCA AAGCACTTTG TTGGAGATGG GGGTACTGAC CGAGGTATAA ATGAGGGAAA 421 TACCATATCA TCGTATGAAG ATCTAGAGAG AATACATATT CCCCCATATA TTGACTGTAT 481 TTCTCAGGGA GTTTGCACAG TAATGGCATC CTACTCTAAA TGGAATGGAA GCCACCTGCA 541 TTCTAGCCAC TTTCTTCTTA CTGAAGTTTT GAAAGGGAAG CTCGGATTTA AGGGCTTTGT 601 TATTTCTGAT TCCGAAGGAA TTGACCGATT TTTCCATCCT CATGGATCTA ACTATGACCA 661 AAGTATTTTG GCAGCAATCA ATGCAGGGAT TGACATGGTG ATGGTTCCTT TTCGGTATCA 721 TTATTTCTCG ATCATTTGAA TATCTTGTGG GAATCTGGAA TATTCCNATG ACANAATGAT 781 GATGCT Predicted gene structure (within gDNA segment 5578 to 9990): Exon 1 6178 6288 ( 111 n); cDNA 1 111 ( 111 n); score: 1.000 Intron 1 6289 6381 ( 93 n); Pd: 0.992 (s: 1.00), Pa: 0.884 (s: 1.00) Exon 2 6382 6472 ( 91 n); cDNA 112 202 ( 91 n); score: 1.000 Intron 2 6473 7169 ( 697 n); Pd: 0.977 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 3 7170 7315 ( 146 n); cDNA 203 348 ( 146 n); score: 1.000 Intron 3 7316 7657 ( 342 n); Pd: 0.974 (s: 1.00), Pa: 0.953 (s: 1.00) Exon 4 7658 7901 ( 244 n); cDNA 349 592 ( 244 n); score: 1.000 Intron 4 7902 8692 ( 791 n); Pd: 0.998 (s: 1.00), Pa: 0.587 (s: 1.00) Exon 5 8693 8797 ( 105 n); cDNA 593 697 ( 105 n); score: 1.000 Intron 5 8798 8876 ( 79 n); Pd: 0.998 (s: 1.00), Pa: 0.990 (s: 0.96) Exon 6 8877 8969 ( 93 n); cDNA 698 786 ( 89 n); score: 0.898 MATCH C06HBa0054K13.1-4+ SGN-E260789+ 0.988 790 1.005 C PGS_C06HBa0054K13.1-4+_SGN-E260789+ (6178 6288,6382 6472,7170 7315,7658 7901,8693 8797,8877 8969) Alignment (genomic DNA sequence = upper lines): GGAATCACGG CTTGGGATTC CGCTTCTTTA TGGAGTTGAC GCTATTCATG GCAATAACAA 6237 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGAATCACGG CTTGGGATTC CGCTTCTTTA TGGAGTTGAC GCTATTCATG GCAATAACAA 60 TGTTTATGGT GCTACCGTTT TTCCACAAAA TGTGGGCCTT GGAGCCACCA GGTTGAATTA 6297 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| | TGTTTATGGT GCTACCGTTT TTCCACAAAA TGTGGGCCTT GGAGCCACCA G......... 111 ATGTCAAGCT TTGATCTTTA TTACCAATTC TTATTGATAA CTGGCATTTA AGATCAATAC 6357 .......... .......... .......... .......... .......... .......... 111 CTAAATTAGA TAAATATCGA GCAGAGATGC AGACTTGGTT CAGAAGATTG GGATTGTGAC 6417 |||||| |||||||||| |||||||||| |||||||||| .......... .......... ....AGATGC AGACTTGGTT CAGAAGATTG GGATTGTGAC 147 TGCTCTTGAA GTCAGGGCTT GTGGCATTAA CTATACTTTT GCTCCCTGTG TTGCTGTAAG 6477 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||| TGCTCTTGAA GTCAGGGCTT GTGGCATTAA CTATACTTTT GCTCCCTGTG TTGCT..... 202 TTGAACGTGT TACTTGTCCC TTTATTGTCT TTGTTTTAGG TCAATTTCAT GGATGAATGA 6537 .......... .......... .......... .......... .......... .......... 202 AGTAAAGGAA ACATAAGACG TTGGACATAT GTACACTTAG AGCAAGATGG AAATAGGATA 6597 .......... .......... .......... .......... .......... .......... 202 CCCTAAGTAT CACATCAAAA TTTATAATTT GAATTCTTAA TTGGTCCTTC CGTTACAAAT 6657 .......... .......... .......... .......... .......... .......... 202 TTTTTGTCCG GTTTTGACTG GGCATTGAGT TAAAGAAAGT TGCGAAAACT TACAAATCTT 6717 .......... .......... .......... .......... .......... .......... 202 GTGGTCTTAA GCTATAAATA TGTAGAATTT ACCAAAATGC CCTTTAATAT TGTGTTCTTA 6777 .......... .......... .......... .......... .......... .......... 202 AACATGTCAT GTGAGTGACA ATTAAAGAGT TGTCAAAAAA GAAAAGATAC ATTCTTTTTG 6837 .......... .......... .......... .......... .......... .......... 202 AAACGGACTA AAAAGAAAAG TAGGACAAAC AAATTGAAAC AGAGGGAGTA GTATGTTGCT 6897 .......... .......... .......... .......... .......... .......... 202 AACTGAGACA AGAGAAACAT GATTTGTCGT TTTTCTTTTT GGGAATTCTT GGTTAAAATT 6957 .......... .......... .......... .......... .......... .......... 202 TTTATGTTCC CAGTACCTCG TAACTGCTAT CTCTCTAGAA GTAGTACTTG TTTTTTTTTT 7017 .......... .......... .......... .......... .......... .......... 202 GTTTGTTTGA GAAGATAAGC AGCTTGTATA TTGATAAAGA GAAACTATGT AGTACCAAGC 7077 .......... .......... .......... .......... .......... .......... 202 TGATGCTGAG CAATACCTCT CTAGTTGTTA TCTCTTTTTA ACTCTATTGT CTTGAGGCAT 7137 .......... .......... .......... .......... .......... .......... 202 CTTGACTTCT TCATTTAAAT AATGTGAAAC AGGTATGTAG AGATCCCAGG TGGGGAAGAT 7197 |||||||| |||||||||| |||||||||| .......... .......... .......... ..GTATGTAG AGATCCCAGG TGGGGAAGAT 230 GCTATGAGAG TTATGGCGAA GACACCGAAC TTATTAGGAA GATGACCTCA ATTGTCACAG 7257 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTATGAGAG TTATGGCGAA GACACCGAAC TTATTAGGAA GATGACCTCA ATTGTCACAG 290 GCTTGCAAGG GCAACCACCT CCTGGATACC CCCAAAACTA TCCTTTTCTA GCTGGAAGGT 7317 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||| GCTTGCAAGG GCAACCACCT CCTGGATACC CCCAAAACTA TCCTTTTCTA GCTGGAAG.. 348 AGTAGAAGTT GCCATAAAAC AAGTTCCAAA ATTTTGTATG CTTCTCTGAA TATATATAAA 7377 .......... .......... .......... .......... .......... .......... 348 ATTTATTTCT CTTGTATTTT ACAACCTATA ATCTTAAGTC TTATGTGCAT TCAAATGCTA 7437 .......... .......... .......... .......... .......... .......... 348 TTCCACATGT TGCAATTTTC AGCAGAAAAG TCATTAGGGA AGGAAAAGTA GAAGCATAGC 7497 .......... .......... .......... .......... .......... .......... 348 TAGAGTTGAA AATAAAAAAA TCAGTGTTGA AAAGTGTGTC TTAGCTATTA TTACCTTATT 7557 .......... .......... .......... .......... .......... .......... 348 GTTGATCATT CGCCAGATAC TTCTACAGCT TTCTACTTTT GTATTTTTTG TTCTCCTAAT 7617 .......... .......... .......... .......... .......... .......... 348 GGCAAGGATC TCTTTGGACT GATTGATGAA TTTACTCCAG AGACAAGGTT GTTGCCTGTG 7677 |||||||||| |||||||||| .......... .......... .......... .......... AGACAAGGTT GTTGCCTGTG 368 CAAAGCACTT TGTTGGAGAT GGGGGTACTG ACCGAGGTAT AAATGAGGGA AATACCATAT 7737 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAAGCACTT TGTTGGAGAT GGGGGTACTG ACCGAGGTAT AAATGAGGGA AATACCATAT 428 CATCGTATGA AGATCTAGAG AGAATACATA TTCCCCCATA TATTGACTGT ATTTCTCAGG 7797 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATCGTATGA AGATCTAGAG AGAATACATA TTCCCCCATA TATTGACTGT ATTTCTCAGG 488 GAGTTTGCAC AGTAATGGCA TCCTACTCTA AATGGAATGG AAGCCACCTG CATTCTAGCC 7857 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGTTTGCAC AGTAATGGCA TCCTACTCTA AATGGAATGG AAGCCACCTG CATTCTAGCC 548 ACTTTCTTCT TACTGAAGTT TTGAAAGGGA AGCTCGGATT TAAGGTAAGG ATTGCCTGTT 7917 |||||||||| |||||||||| |||||||||| |||||||||| |||| ACTTTCTTCT TACTGAAGTT TTGAAAGGGA AGCTCGGATT TAAG...... .......... 592 CTCTTAATGC TCTATGGTTC ATTTGAAGTC CAAATTTTGG ACCATTAGTT CAACATAAAA 7977 .......... .......... .......... .......... .......... .......... 592 ATCCTCTAGA TTGTTAGATG CTTTTCTCAT TTCCTTACCA TGCTTAGTAG GGGAAGTGAT 8037 .......... .......... .......... .......... .......... .......... 592 TGAACATATT GCGGTTCCAA AATGCTGAGT TTCAGGGCCC ATTTTTGATC GGTATTGTTC 8097 .......... .......... .......... .......... .......... .......... 592 TTTAAAATAA TGTAGAAAAC TAATCAAATT GGTCTGAAGC CTGCACATGT TTGGACTTTG 8157 .......... .......... .......... .......... .......... .......... 592 TATTCAGCAA ACACAAAAGA TTCTCTCAGC AAAGAGCTAG AGAAGTTCAT GTGGCTTGGA 8217 .......... .......... .......... .......... .......... .......... 592 GTTTGTTCTA CTTAGTTTAA ACTTCACCAA GCCGAAAGTG TAAAAACTTG TTTCGATGTG 8277 .......... .......... .......... .......... .......... .......... 592 CTTGCTTCAA CTTACAAAGG AGTCGGTAAG GCAAAGAGAG TGGTAAGTAC TCCTTTGTCC 8337 .......... .......... .......... .......... .......... .......... 592 TTAACAAGAG GTCTAGGGTT CGAGTCCCCT TGGGTACGGA GTCGCCTTTG TTAGGGAGTG 8397 .......... .......... .......... .......... .......... .......... 592 CTTTACCCCA ATGTGGGACT TTCCGACGCG AATCCGAATT TAGTCGGGCT CCAATGTGGG 8457 .......... .......... .......... .......... .......... .......... 592 TAGGGGACAC TGGATGGGAA ACCAAAAAAA AAAGGTATGG TTAAGGGGAT TAAGAAACAA 8517 .......... .......... .......... .......... .......... .......... 592 TGTCTCTCTT TTATCTGAAT CTGGTTGCGT GGAATTTTGT TATTGTTTAT TTATATTTTA 8577 .......... .......... .......... .......... .......... .......... 592 CCTCGATTTG AATGAAATGC TATGCACTAA TGTTCTATTT GTTTGTCAAG TTGCTAGAAT 8637 .......... .......... .......... .......... .......... .......... 592 ATGATTGGCT TAAAGATCAC ATACACTGCA AGAATCTGAA TGCTAACTCT TGTAGGGCTT 8697 ||||| .......... .......... .......... .......... .......... .....GGCTT 597 TGTTATTTCT GATTCCGAAG GAATTGACCG ATTTTTCCAT CCTCATGGAT CTAACTATGA 8757 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTTATTTCT GATTCCGAAG GAATTGACCG ATTTTTCCAT CCTCATGGAT CTAACTATGA 657 CCAAAGTATT TTGGCAGCAA TCAATGCAGG GATTGACATG GTACATAAAA CCTTGTTTTA 8817 |||||||||| |||||||||| |||||||||| |||||||||| CCAAAGTATT TTGGCAGCAA TCAATGCAGG GATTGACATG .......... .......... 697 AGAGTTATTT TGTCTTTGCA TGAGTTATTT TTGTTCTTAC TGTGTTAGAT TTTTTGCAGG 8877 | .......... .......... .......... .......... .......... .........G 698 TGATGGTTCC TTTTCGGTAT CAATTATTTC TCGATCATTT GAAATATCTT GT-GGAATCT 8936 |||||||||| |||||||||| | |||||||| |||||||||| | |||||||| || ||||||| TGATGGTTCC TTTTCGGTAT C-ATTATTTC TCGATCATTT G-AATATCTT GTGGGAATCT 756 GGGAATATTC CAATGACCAG AATTGATGAT GCT 8969 ||||||||| | |||| || || ||||||| ||| -GGAATATTC CNATGA-CAN AA-TGATGAT GCT 786 hqPGS_C06HBa0054K13.1-4+_SGN-E260789+ (6178 6288,6382 6472,7170 7315,7658 7901,8693 8797,8877 8969) ******************************************************************************** EST sequence 10 +strand 368 n (File: SGN-E244575+) 1 AGAGATGCAG ACTTGGTTCA GAAGATTGGG ATTGTGACTG CTCTTGAAGT CAGGGCTTGT 61 GGCATTAACT ATACTTTTGC TCCCTGTGTT GCTGTATGTA GAGATCCCAG GTGGGGAAGA 121 TGCTATGAGA GTTATGGCGA AGACACCGAA CTTATTAGGA AGATGACCTC AATTGTCACA 181 GGCTTGCAAG GGCAACCACC TCCTGGATAC CCCCAAAACT ATCCTTTTCT AGCTGGAAGA 241 GACAAGGTTG TTGCCTGTGC AAAGCACTTT GTTGGAGATG GGGGTACTGA CCGAGGTATA 301 AATGAGGGAA ATACCATATC ATCGTATGAA GATCTAGAGA GAATACATAT TCCCCCATAT 361 ATTGACTG Predicted gene structure (within gDNA segment 5780 to 8396): Exon 1 6380 6472 ( 93 n); cDNA 1 93 ( 93 n); score: 1.000 Intron 1 6473 7169 ( 697 n); Pd: 0.977 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 7170 7315 ( 146 n); cDNA 94 239 ( 146 n); score: 1.000 Intron 2 7316 7657 ( 342 n); Pd: 0.974 (s: 1.00), Pa: 0.953 (s: 1.00) Exon 3 7658 7786 ( 129 n); cDNA 240 368 ( 129 n); score: 1.000 MATCH C06HBa0054K13.1-4+ SGN-E244575+ 1.000 368 1.000 C PGS_C06HBa0054K13.1-4+_SGN-E244575+ (6380 6472,7170 7315,7658 7786) Alignment (genomic DNA sequence = upper lines): AGAGATGCAG ACTTGGTTCA GAAGATTGGG ATTGTGACTG CTCTTGAAGT CAGGGCTTGT 6439 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAGATGCAG ACTTGGTTCA GAAGATTGGG ATTGTGACTG CTCTTGAAGT CAGGGCTTGT 60 GGCATTAACT ATACTTTTGC TCCCTGTGTT GCTGTAAGTT GAACGTGTTA CTTGTCCCTT 6499 |||||||||| |||||||||| |||||||||| ||| GGCATTAACT ATACTTTTGC TCCCTGTGTT GCT....... .......... .......... 93 TATTGTCTTT GTTTTAGGTC AATTTCATGG ATGAATGAAG TAAAGGAAAC ATAAGACGTT 6559 .......... .......... .......... .......... .......... .......... 93 GGACATATGT ACACTTAGAG CAAGATGGAA ATAGGATACC CTAAGTATCA CATCAAAATT 6619 .......... .......... .......... .......... .......... .......... 93 TATAATTTGA ATTCTTAATT GGTCCTTCCG TTACAAATTT TTTGTCCGGT TTTGACTGGG 6679 .......... .......... .......... .......... .......... .......... 93 CATTGAGTTA AAGAAAGTTG CGAAAACTTA CAAATCTTGT GGTCTTAAGC TATAAATATG 6739 .......... .......... .......... .......... .......... .......... 93 TAGAATTTAC CAAAATGCCC TTTAATATTG TGTTCTTAAA CATGTCATGT GAGTGACAAT 6799 .......... .......... .......... .......... .......... .......... 93 TAAAGAGTTG TCAAAAAAGA AAAGATACAT TCTTTTTGAA ACGGACTAAA AAGAAAAGTA 6859 .......... .......... .......... .......... .......... .......... 93 GGACAAACAA ATTGAAACAG AGGGAGTAGT ATGTTGCTAA CTGAGACAAG AGAAACATGA 6919 .......... .......... .......... .......... .......... .......... 93 TTTGTCGTTT TTCTTTTTGG GAATTCTTGG TTAAAATTTT TATGTTCCCA GTACCTCGTA 6979 .......... .......... .......... .......... .......... .......... 93 ACTGCTATCT CTCTAGAAGT AGTACTTGTT TTTTTTTTGT TTGTTTGAGA AGATAAGCAG 7039 .......... .......... .......... .......... .......... .......... 93 CTTGTATATT GATAAAGAGA AACTATGTAG TACCAAGCTG ATGCTGAGCA ATACCTCTCT 7099 .......... .......... .......... .......... .......... .......... 93 AGTTGTTATC TCTTTTTAAC TCTATTGTCT TGAGGCATCT TGACTTCTTC ATTTAAATAA 7159 .......... .......... .......... .......... .......... .......... 93 TGTGAAACAG GTATGTAGAG ATCCCAGGTG GGGAAGATGC TATGAGAGTT ATGGCGAAGA 7219 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... GTATGTAGAG ATCCCAGGTG GGGAAGATGC TATGAGAGTT ATGGCGAAGA 143 CACCGAACTT ATTAGGAAGA TGACCTCAAT TGTCACAGGC TTGCAAGGGC AACCACCTCC 7279 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CACCGAACTT ATTAGGAAGA TGACCTCAAT TGTCACAGGC TTGCAAGGGC AACCACCTCC 203 TGGATACCCC CAAAACTATC CTTTTCTAGC TGGAAGGTAG TAGAAGTTGC CATAAAACAA 7339 |||||||||| |||||||||| |||||||||| |||||| TGGATACCCC CAAAACTATC CTTTTCTAGC TGGAAG.... .......... .......... 239 GTTCCAAAAT TTTGTATGCT TCTCTGAATA TATATAAAAT TTATTTCTCT TGTATTTTAC 7399 .......... .......... .......... .......... .......... .......... 239 AACCTATAAT CTTAAGTCTT ATGTGCATTC AAATGCTATT CCACATGTTG CAATTTTCAG 7459 .......... .......... .......... .......... .......... .......... 239 CAGAAAAGTC ATTAGGGAAG GAAAAGTAGA AGCATAGCTA GAGTTGAAAA TAAAAAAATC 7519 .......... .......... .......... .......... .......... .......... 239 AGTGTTGAAA AGTGTGTCTT AGCTATTATT ACCTTATTGT TGATCATTCG CCAGATACTT 7579 .......... .......... .......... .......... .......... .......... 239 CTACAGCTTT CTACTTTTGT ATTTTTTGTT CTCCTAATGG CAAGGATCTC TTTGGACTGA 7639 .......... .......... .......... .......... .......... .......... 239 TTGATGAATT TACTCCAGAG ACAAGGTTGT TGCCTGTGCA AAGCACTTTG TTGGAGATGG 7699 || |||||||||| |||||||||| |||||||||| |||||||||| .......... ........AG ACAAGGTTGT TGCCTGTGCA AAGCACTTTG TTGGAGATGG 281 GGGTACTGAC CGAGGTATAA ATGAGGGAAA TACCATATCA TCGTATGAAG ATCTAGAGAG 7759 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGGTACTGAC CGAGGTATAA ATGAGGGAAA TACCATATCA TCGTATGAAG ATCTAGAGAG 341 AATACATATT CCCCCATATA TTGACTG 7786 |||||||||| |||||||||| ||||||| AATACATATT CCCCCATATA TTGACTG 368 hqPGS_C06HBa0054K13.1-4+_SGN-E244575+ (6380 6472,7170 7315,7658 7786) ******************************************************************************** EST sequence 5 +strand 335 n (File: SGN-E228067+) 1 AGAGATGCAT ACTTGGTTCA GAAGATTGGG ATTGTGACTG CTCTTGAAGT CAGGGCTTGT 61 GGCATTAACT ATACTTTTGC TCCCTGTGTT GCTGTATGTA GAGATCCCAG GTGGGGAAGA 121 TGCTATGAGA GTTATGGCGA AGACACCGAA CTTATTAGGA AGATGACCTC AATTGTCACA 181 GGCTTGCAAG GGCAACCACC TCCTGGATAC CCCCAAAACT ATCCTTTTCT AGCTGGAAGA 241 GACAAGGTTG TTGCCTGTGC AAAGCACTTT GTTGGAGATG GGGGTACTGA CCGAGGTATA 301 AATGAGGGAA ATACCATATC ATCGTATGAA GATCT Predicted gene structure (within gDNA segment 5690 to 8363): Exon 1 6380 6472 ( 93 n); cDNA 1 93 ( 93 n); score: 0.989 Intron 1 6473 7169 ( 697 n); Pd: 0.977 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 7170 7315 ( 146 n); cDNA 94 239 ( 146 n); score: 1.000 Intron 2 7316 7657 ( 342 n); Pd: 0.974 (s: 1.00), Pa: 0.953 (s: 1.00) Exon 3 7658 7753 ( 96 n); cDNA 240 335 ( 96 n); score: 1.000 MATCH C06HBa0054K13.1-4+ SGN-E228067+ 0.997 335 1.000 C PGS_C06HBa0054K13.1-4+_SGN-E228067+ (6380 6472,7170 7315,7658 7753) Alignment (genomic DNA sequence = upper lines): AGAGATGCAG ACTTGGTTCA GAAGATTGGG ATTGTGACTG CTCTTGAAGT CAGGGCTTGT 6439 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAGATGCAT ACTTGGTTCA GAAGATTGGG ATTGTGACTG CTCTTGAAGT CAGGGCTTGT 60 GGCATTAACT ATACTTTTGC TCCCTGTGTT GCTGTAAGTT GAACGTGTTA CTTGTCCCTT 6499 |||||||||| |||||||||| |||||||||| ||| GGCATTAACT ATACTTTTGC TCCCTGTGTT GCT....... .......... .......... 93 TATTGTCTTT GTTTTAGGTC AATTTCATGG ATGAATGAAG TAAAGGAAAC ATAAGACGTT 6559 .......... .......... .......... .......... .......... .......... 93 GGACATATGT ACACTTAGAG CAAGATGGAA ATAGGATACC CTAAGTATCA CATCAAAATT 6619 .......... .......... .......... .......... .......... .......... 93 TATAATTTGA ATTCTTAATT GGTCCTTCCG TTACAAATTT TTTGTCCGGT TTTGACTGGG 6679 .......... .......... .......... .......... .......... .......... 93 CATTGAGTTA AAGAAAGTTG CGAAAACTTA CAAATCTTGT GGTCTTAAGC TATAAATATG 6739 .......... .......... .......... .......... .......... .......... 93 TAGAATTTAC CAAAATGCCC TTTAATATTG TGTTCTTAAA CATGTCATGT GAGTGACAAT 6799 .......... .......... .......... .......... .......... .......... 93 TAAAGAGTTG TCAAAAAAGA AAAGATACAT TCTTTTTGAA ACGGACTAAA AAGAAAAGTA 6859 .......... .......... .......... .......... .......... .......... 93 GGACAAACAA ATTGAAACAG AGGGAGTAGT ATGTTGCTAA CTGAGACAAG AGAAACATGA 6919 .......... .......... .......... .......... .......... .......... 93 TTTGTCGTTT TTCTTTTTGG GAATTCTTGG TTAAAATTTT TATGTTCCCA GTACCTCGTA 6979 .......... .......... .......... .......... .......... .......... 93 ACTGCTATCT CTCTAGAAGT AGTACTTGTT TTTTTTTTGT TTGTTTGAGA AGATAAGCAG 7039 .......... .......... .......... .......... .......... .......... 93 CTTGTATATT GATAAAGAGA AACTATGTAG TACCAAGCTG ATGCTGAGCA ATACCTCTCT 7099 .......... .......... .......... .......... .......... .......... 93 AGTTGTTATC TCTTTTTAAC TCTATTGTCT TGAGGCATCT TGACTTCTTC ATTTAAATAA 7159 .......... .......... .......... .......... .......... .......... 93 TGTGAAACAG GTATGTAGAG ATCCCAGGTG GGGAAGATGC TATGAGAGTT ATGGCGAAGA 7219 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... GTATGTAGAG ATCCCAGGTG GGGAAGATGC TATGAGAGTT ATGGCGAAGA 143 CACCGAACTT ATTAGGAAGA TGACCTCAAT TGTCACAGGC TTGCAAGGGC AACCACCTCC 7279 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CACCGAACTT ATTAGGAAGA TGACCTCAAT TGTCACAGGC TTGCAAGGGC AACCACCTCC 203 TGGATACCCC CAAAACTATC CTTTTCTAGC TGGAAGGTAG TAGAAGTTGC CATAAAACAA 7339 |||||||||| |||||||||| |||||||||| |||||| TGGATACCCC CAAAACTATC CTTTTCTAGC TGGAAG.... .......... .......... 239 GTTCCAAAAT TTTGTATGCT TCTCTGAATA TATATAAAAT TTATTTCTCT TGTATTTTAC 7399 .......... .......... .......... .......... .......... .......... 239 AACCTATAAT CTTAAGTCTT ATGTGCATTC AAATGCTATT CCACATGTTG CAATTTTCAG 7459 .......... .......... .......... .......... .......... .......... 239 CAGAAAAGTC ATTAGGGAAG GAAAAGTAGA AGCATAGCTA GAGTTGAAAA TAAAAAAATC 7519 .......... .......... .......... .......... .......... .......... 239 AGTGTTGAAA AGTGTGTCTT AGCTATTATT ACCTTATTGT TGATCATTCG CCAGATACTT 7579 .......... .......... .......... .......... .......... .......... 239 CTACAGCTTT CTACTTTTGT ATTTTTTGTT CTCCTAATGG CAAGGATCTC TTTGGACTGA 7639 .......... .......... .......... .......... .......... .......... 239 TTGATGAATT TACTCCAGAG ACAAGGTTGT TGCCTGTGCA AAGCACTTTG TTGGAGATGG 7699 || |||||||||| |||||||||| |||||||||| |||||||||| .......... ........AG ACAAGGTTGT TGCCTGTGCA AAGCACTTTG TTGGAGATGG 281 GGGTACTGAC CGAGGTATAA ATGAGGGAAA TACCATATCA TCGTATGAAG ATCT 7753 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||| GGGTACTGAC CGAGGTATAA ATGAGGGAAA TACCATATCA TCGTATGAAG ATCT 335 hqPGS_C06HBa0054K13.1-4+_SGN-E228067+ (6380 6472,7170 7315,7658 7753) ******************************************************************************** EST sequence 12 +strand 623 n (File: SGN-E268863+) 1 AGATGCAGAC TTGGTTCAGA AGATTGGGAT TGTGACTGCT CTTGAAGTCA GGGCTTGTGG 61 CATTAACTAT ACTTTTGCTC CCTGTGTTGC TGTATGTAGA GATCCCAGGT GGGGAAGATG 121 CTATGAGAGT TATGGCGAAG ACACCGAACT TATTAGGAAG ATGACCTCAA TTGTCACAGG 181 CTTGCAAGGG CAACCACCTC CTGGATACCC CCAAAACTAT CCTTTTCTAG CTGGAAGAGA 241 CAAGGTTGTT GCCTGTGCAA AGCACTTTGT TGGAGATGGG GGTACTGACC GAGGTATAAA 301 TGAGGGAAAT ACCATATCAT CGTATGAAGA TCTAGAGAGA ATACATATTC CCCCATATAT 361 TGACTGTATT TCTCAGGGAG TTTGCACAGT AATGGCATCC TACTCTAAAT GGAATGGAAG 421 CCACCTGCAT TCTAGCCACT TTCTTCTTAC TGAAGTTTTG AAAGGGAAGC TCGGATTTAA 481 GGGCTTTGTT ATTTCTGATT CCGAAGGAAT TGACCGATTT TTCCATCCTC ATGGATCTAA 541 CTATGACCAA AGTATTTTGG CAGCAATCAA TGCAGGGATT GACATGGTGA TGGTTCCTTT 601 TCGGTATCAA TTATTTCTCG ATC Predicted gene structure (within gDNA segment 5782 to 9523): Exon 1 6382 6472 ( 91 n); cDNA 1 91 ( 91 n); score: 1.000 Intron 1 6473 7169 ( 697 n); Pd: 0.977 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 7170 7315 ( 146 n); cDNA 92 237 ( 146 n); score: 1.000 Intron 2 7316 7657 ( 342 n); Pd: 0.974 (s: 1.00), Pa: 0.953 (s: 1.00) Exon 3 7658 7901 ( 244 n); cDNA 238 481 ( 244 n); score: 1.000 Intron 3 7902 8692 ( 791 n); Pd: 0.998 (s: 1.00), Pa: 0.587 (s: 1.00) Exon 4 8693 8797 ( 105 n); cDNA 482 586 ( 105 n); score: 1.000 Intron 4 8798 8876 ( 79 n); Pd: 0.998 (s: 1.00), Pa: 0.990 (s: 0) Exon 5 8877 8913 ( 37 n); cDNA 587 623 ( 37 n); score: 1.000 MATCH C06HBa0054K13.1-4+ SGN-E268863+ 1.000 623 1.000 C PGS_C06HBa0054K13.1-4+_SGN-E268863+ (6382 6472,7170 7315,7658 7901,8693 8797,8877 8913) Alignment (genomic DNA sequence = upper lines): AGATGCAGAC TTGGTTCAGA AGATTGGGAT TGTGACTGCT CTTGAAGTCA GGGCTTGTGG 6441 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGATGCAGAC TTGGTTCAGA AGATTGGGAT TGTGACTGCT CTTGAAGTCA GGGCTTGTGG 60 CATTAACTAT ACTTTTGCTC CCTGTGTTGC TGTAAGTTGA ACGTGTTACT TGTCCCTTTA 6501 |||||||||| |||||||||| |||||||||| | CATTAACTAT ACTTTTGCTC CCTGTGTTGC T......... .......... .......... 91 TTGTCTTTGT TTTAGGTCAA TTTCATGGAT GAATGAAGTA AAGGAAACAT AAGACGTTGG 6561 .......... .......... .......... .......... .......... .......... 91 ACATATGTAC ACTTAGAGCA AGATGGAAAT AGGATACCCT AAGTATCACA TCAAAATTTA 6621 .......... .......... .......... .......... .......... .......... 91 TAATTTGAAT TCTTAATTGG TCCTTCCGTT ACAAATTTTT TGTCCGGTTT TGACTGGGCA 6681 .......... .......... .......... .......... .......... .......... 91 TTGAGTTAAA GAAAGTTGCG AAAACTTACA AATCTTGTGG TCTTAAGCTA TAAATATGTA 6741 .......... .......... .......... .......... .......... .......... 91 GAATTTACCA AAATGCCCTT TAATATTGTG TTCTTAAACA TGTCATGTGA GTGACAATTA 6801 .......... .......... .......... .......... .......... .......... 91 AAGAGTTGTC AAAAAAGAAA AGATACATTC TTTTTGAAAC GGACTAAAAA GAAAAGTAGG 6861 .......... .......... .......... .......... .......... .......... 91 ACAAACAAAT TGAAACAGAG GGAGTAGTAT GTTGCTAACT GAGACAAGAG AAACATGATT 6921 .......... .......... .......... .......... .......... .......... 91 TGTCGTTTTT CTTTTTGGGA ATTCTTGGTT AAAATTTTTA TGTTCCCAGT ACCTCGTAAC 6981 .......... .......... .......... .......... .......... .......... 91 TGCTATCTCT CTAGAAGTAG TACTTGTTTT TTTTTTGTTT GTTTGAGAAG ATAAGCAGCT 7041 .......... .......... .......... .......... .......... .......... 91 TGTATATTGA TAAAGAGAAA CTATGTAGTA CCAAGCTGAT GCTGAGCAAT ACCTCTCTAG 7101 .......... .......... .......... .......... .......... .......... 91 TTGTTATCTC TTTTTAACTC TATTGTCTTG AGGCATCTTG ACTTCTTCAT TTAAATAATG 7161 .......... .......... .......... .......... .......... .......... 91 TGAAACAGGT ATGTAGAGAT CCCAGGTGGG GAAGATGCTA TGAGAGTTAT GGCGAAGACA 7221 || |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ........GT ATGTAGAGAT CCCAGGTGGG GAAGATGCTA TGAGAGTTAT GGCGAAGACA 143 CCGAACTTAT TAGGAAGATG ACCTCAATTG TCACAGGCTT GCAAGGGCAA CCACCTCCTG 7281 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCGAACTTAT TAGGAAGATG ACCTCAATTG TCACAGGCTT GCAAGGGCAA CCACCTCCTG 203 GATACCCCCA AAACTATCCT TTTCTAGCTG GAAGGTAGTA GAAGTTGCCA TAAAACAAGT 7341 |||||||||| |||||||||| |||||||||| |||| GATACCCCCA AAACTATCCT TTTCTAGCTG GAAG...... .......... .......... 237 TCCAAAATTT TGTATGCTTC TCTGAATATA TATAAAATTT ATTTCTCTTG TATTTTACAA 7401 .......... .......... .......... .......... .......... .......... 237 CCTATAATCT TAAGTCTTAT GTGCATTCAA ATGCTATTCC ACATGTTGCA ATTTTCAGCA 7461 .......... .......... .......... .......... .......... .......... 237 GAAAAGTCAT TAGGGAAGGA AAAGTAGAAG CATAGCTAGA GTTGAAAATA AAAAAATCAG 7521 .......... .......... .......... .......... .......... .......... 237 TGTTGAAAAG TGTGTCTTAG CTATTATTAC CTTATTGTTG ATCATTCGCC AGATACTTCT 7581 .......... .......... .......... .......... .......... .......... 237 ACAGCTTTCT ACTTTTGTAT TTTTTGTTCT CCTAATGGCA AGGATCTCTT TGGACTGATT 7641 .......... .......... .......... .......... .......... .......... 237 GATGAATTTA CTCCAGAGAC AAGGTTGTTG CCTGTGCAAA GCACTTTGTT GGAGATGGGG 7701 |||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ......AGAC AAGGTTGTTG CCTGTGCAAA GCACTTTGTT GGAGATGGGG 281 GTACTGACCG AGGTATAAAT GAGGGAAATA CCATATCATC GTATGAAGAT CTAGAGAGAA 7761 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTACTGACCG AGGTATAAAT GAGGGAAATA CCATATCATC GTATGAAGAT CTAGAGAGAA 341 TACATATTCC CCCATATATT GACTGTATTT CTCAGGGAGT TTGCACAGTA ATGGCATCCT 7821 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TACATATTCC CCCATATATT GACTGTATTT CTCAGGGAGT TTGCACAGTA ATGGCATCCT 401 ACTCTAAATG GAATGGAAGC CACCTGCATT CTAGCCACTT TCTTCTTACT GAAGTTTTGA 7881 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACTCTAAATG GAATGGAAGC CACCTGCATT CTAGCCACTT TCTTCTTACT GAAGTTTTGA 461 AAGGGAAGCT CGGATTTAAG GTAAGGATTG CCTGTTCTCT TAATGCTCTA TGGTTCATTT 7941 |||||||||| |||||||||| AAGGGAAGCT CGGATTTAAG .......... .......... .......... .......... 481 GAAGTCCAAA TTTTGGACCA TTAGTTCAAC ATAAAAATCC TCTAGATTGT TAGATGCTTT 8001 .......... .......... .......... .......... .......... .......... 481 TCTCATTTCC TTACCATGCT TAGTAGGGGA AGTGATTGAA CATATTGCGG TTCCAAAATG 8061 .......... .......... .......... .......... .......... .......... 481 CTGAGTTTCA GGGCCCATTT TTGATCGGTA TTGTTCTTTA AAATAATGTA GAAAACTAAT 8121 .......... .......... .......... .......... .......... .......... 481 CAAATTGGTC TGAAGCCTGC ACATGTTTGG ACTTTGTATT CAGCAAACAC AAAAGATTCT 8181 .......... .......... .......... .......... .......... .......... 481 CTCAGCAAAG AGCTAGAGAA GTTCATGTGG CTTGGAGTTT GTTCTACTTA GTTTAAACTT 8241 .......... .......... .......... .......... .......... .......... 481 CACCAAGCCG AAAGTGTAAA AACTTGTTTC GATGTGCTTG CTTCAACTTA CAAAGGAGTC 8301 .......... .......... .......... .......... .......... .......... 481 GGTAAGGCAA AGAGAGTGGT AAGTACTCCT TTGTCCTTAA CAAGAGGTCT AGGGTTCGAG 8361 .......... .......... .......... .......... .......... .......... 481 TCCCCTTGGG TACGGAGTCG CCTTTGTTAG GGAGTGCTTT ACCCCAATGT GGGACTTTCC 8421 .......... .......... .......... .......... .......... .......... 481 GACGCGAATC CGAATTTAGT CGGGCTCCAA TGTGGGTAGG GGACACTGGA TGGGAAACCA 8481 .......... .......... .......... .......... .......... .......... 481 AAAAAAAAAG GTATGGTTAA GGGGATTAAG AAACAATGTC TCTCTTTTAT CTGAATCTGG 8541 .......... .......... .......... .......... .......... .......... 481 TTGCGTGGAA TTTTGTTATT GTTTATTTAT ATTTTACCTC GATTTGAATG AAATGCTATG 8601 .......... .......... .......... .......... .......... .......... 481 CACTAATGTT CTATTTGTTT GTCAAGTTGC TAGAATATGA TTGGCTTAAA GATCACATAC 8661 .......... .......... .......... .......... .......... .......... 481 ACTGCAAGAA TCTGAATGCT AACTCTTGTA GGGCTTTGTT ATTTCTGATT CCGAAGGAAT 8721 ||||||||| |||||||||| |||||||||| .......... .......... .......... .GGCTTTGTT ATTTCTGATT CCGAAGGAAT 510 TGACCGATTT TTCCATCCTC ATGGATCTAA CTATGACCAA AGTATTTTGG CAGCAATCAA 8781 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGACCGATTT TTCCATCCTC ATGGATCTAA CTATGACCAA AGTATTTTGG CAGCAATCAA 570 TGCAGGGATT GACATGGTAC ATAAAACCTT GTTTTAAGAG TTATTTTGTC TTTGCATGAG 8841 |||||||||| |||||| TGCAGGGATT GACATG.... .......... .......... .......... .......... 586 TTATTTTTGT TCTTACTGTG TTAGATTTTT TGCAGGTGAT GGTTCCTTTT CGGTATCAAT 8901 ||||| |||||||||| |||||||||| .......... .......... .......... .....GTGAT GGTTCCTTTT CGGTATCAAT 611 TATTTCTCGA TC 8913 |||||||||| || TATTTCTCGA TC 623 hqPGS_C06HBa0054K13.1-4+_SGN-E268863+ (6382 6472,7170 7315,7658 7901,8693 8797,8877 8913) ******************************************************************************** EST sequence 2 +strand 633 n (File: SGN-E371110+) 1 GTGACTGCTC TTGAAGTCAC GGCTTGTGGC ATTAACTATA CTTTTGCTCC CTGTGTTGCT 61 GTATGTAGAG ATCCCAGGTG GGGAAGATGC TATGAGAGTT ATGGCGAAGA CACCGAACTT 121 ATTAGGAAGA TGACCTCAAT TGTCACAGGC TTGCAAGGGC AACCACCTCC TGGATACCCC 181 CAAAACTATC CTTTTCTAGC TGGAAGAGAC AAGGTTGTTG CCTGTGCAAA GCACTTTGTT 241 GGAGATGGGG GTACTGACCG AGGTATAAAT GAGGGAAATA CCATATCATC GTATGAAGAT 301 CTAGAGAGAA TACATATTCC CCCATATATT GACTGTATTT CTCAGGGAGT TTGCACAGTA 361 ATGGCATCCT ACTCTAAATG GAATGGAAGC CACCTGCATT CTAGCCACTT TCTTCTTACT 421 GAAGTTTTGA AAGGGAAGCT CGGATTTAAG GGCTTTGTTA TTTCTGATTC CGAAGGAATT 481 GACCGATTTT TCCATCCTCA TGGATCTAAC TATGACCAAA GTATTTTGGC AGCAATCAAT 541 GCAGGGATTG ACATGGTGAT GGTTCCTTTT CGGTATCAAT TATTTCTCGA TCATTTGAAA 601 TATCTTGTGG AATCTGGGAA TATTCCAATG ACC Predicted gene structure (within gDNA segment 5813 to 9564): Exon 1 6413 6472 ( 60 n); cDNA 1 60 ( 60 n); score: 0.983 Intron 1 6473 7169 ( 697 n); Pd: 0.977 (s: 0.98), Pa: 1.000 (s: 1.00) Exon 2 7170 7315 ( 146 n); cDNA 61 206 ( 146 n); score: 1.000 Intron 2 7316 7657 ( 342 n); Pd: 0.974 (s: 1.00), Pa: 0.953 (s: 1.00) Exon 3 7658 7901 ( 244 n); cDNA 207 450 ( 244 n); score: 1.000 Intron 3 7902 8692 ( 791 n); Pd: 0.998 (s: 1.00), Pa: 0.587 (s: 1.00) Exon 4 8693 8797 ( 105 n); cDNA 451 555 ( 105 n); score: 1.000 Intron 4 8798 8876 ( 79 n); Pd: 0.998 (s: 1.00), Pa: 0.990 (s: 1.00) Exon 5 8877 8954 ( 78 n); cDNA 556 633 ( 78 n); score: 1.000 MATCH C06HBa0054K13.1-4+ SGN-E371110+ 0.998 633 1.000 C PGS_C06HBa0054K13.1-4+_SGN-E371110+ (6413 6472,7170 7315,7658 7901,8693 8797,8877 8954) Alignment (genomic DNA sequence = upper lines): GTGACTGCTC TTGAAGTCAG GGCTTGTGGC ATTAACTATA CTTTTGCTCC CTGTGTTGCT 6472 |||||||||| ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGACTGCTC TTGAAGTCAC GGCTTGTGGC ATTAACTATA CTTTTGCTCC CTGTGTTGCT 60 GTAAGTTGAA CGTGTTACTT GTCCCTTTAT TGTCTTTGTT TTAGGTCAAT TTCATGGATG 6532 .......... .......... .......... .......... .......... .......... 60 AATGAAGTAA AGGAAACATA AGACGTTGGA CATATGTACA CTTAGAGCAA GATGGAAATA 6592 .......... .......... .......... .......... .......... .......... 60 GGATACCCTA AGTATCACAT CAAAATTTAT AATTTGAATT CTTAATTGGT CCTTCCGTTA 6652 .......... .......... .......... .......... .......... .......... 60 CAAATTTTTT GTCCGGTTTT GACTGGGCAT TGAGTTAAAG AAAGTTGCGA AAACTTACAA 6712 .......... .......... .......... .......... .......... .......... 60 ATCTTGTGGT CTTAAGCTAT AAATATGTAG AATTTACCAA AATGCCCTTT AATATTGTGT 6772 .......... .......... .......... .......... .......... .......... 60 TCTTAAACAT GTCATGTGAG TGACAATTAA AGAGTTGTCA AAAAAGAAAA GATACATTCT 6832 .......... .......... .......... .......... .......... .......... 60 TTTTGAAACG GACTAAAAAG AAAAGTAGGA CAAACAAATT GAAACAGAGG GAGTAGTATG 6892 .......... .......... .......... .......... .......... .......... 60 TTGCTAACTG AGACAAGAGA AACATGATTT GTCGTTTTTC TTTTTGGGAA TTCTTGGTTA 6952 .......... .......... .......... .......... .......... .......... 60 AAATTTTTAT GTTCCCAGTA CCTCGTAACT GCTATCTCTC TAGAAGTAGT ACTTGTTTTT 7012 .......... .......... .......... .......... .......... .......... 60 TTTTTGTTTG TTTGAGAAGA TAAGCAGCTT GTATATTGAT AAAGAGAAAC TATGTAGTAC 7072 .......... .......... .......... .......... .......... .......... 60 CAAGCTGATG CTGAGCAATA CCTCTCTAGT TGTTATCTCT TTTTAACTCT ATTGTCTTGA 7132 .......... .......... .......... .......... .......... .......... 60 GGCATCTTGA CTTCTTCATT TAAATAATGT GAAACAGGTA TGTAGAGATC CCAGGTGGGG 7192 ||| |||||||||| |||||||||| .......... .......... .......... .......GTA TGTAGAGATC CCAGGTGGGG 83 AAGATGCTAT GAGAGTTATG GCGAAGACAC CGAACTTATT AGGAAGATGA CCTCAATTGT 7252 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGATGCTAT GAGAGTTATG GCGAAGACAC CGAACTTATT AGGAAGATGA CCTCAATTGT 143 CACAGGCTTG CAAGGGCAAC CACCTCCTGG ATACCCCCAA AACTATCCTT TTCTAGCTGG 7312 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CACAGGCTTG CAAGGGCAAC CACCTCCTGG ATACCCCCAA AACTATCCTT TTCTAGCTGG 203 AAGGTAGTAG AAGTTGCCAT AAAACAAGTT CCAAAATTTT GTATGCTTCT CTGAATATAT 7372 ||| AAG....... .......... .......... .......... .......... .......... 206 ATAAAATTTA TTTCTCTTGT ATTTTACAAC CTATAATCTT AAGTCTTATG TGCATTCAAA 7432 .......... .......... .......... .......... .......... .......... 206 TGCTATTCCA CATGTTGCAA TTTTCAGCAG AAAAGTCATT AGGGAAGGAA AAGTAGAAGC 7492 .......... .......... .......... .......... .......... .......... 206 ATAGCTAGAG TTGAAAATAA AAAAATCAGT GTTGAAAAGT GTGTCTTAGC TATTATTACC 7552 .......... .......... .......... .......... .......... .......... 206 TTATTGTTGA TCATTCGCCA GATACTTCTA CAGCTTTCTA CTTTTGTATT TTTTGTTCTC 7612 .......... .......... .......... .......... .......... .......... 206 CTAATGGCAA GGATCTCTTT GGACTGATTG ATGAATTTAC TCCAGAGACA AGGTTGTTGC 7672 ||||| |||||||||| .......... .......... .......... .......... .....AGACA AGGTTGTTGC 221 CTGTGCAAAG CACTTTGTTG GAGATGGGGG TACTGACCGA GGTATAAATG AGGGAAATAC 7732 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGTGCAAAG CACTTTGTTG GAGATGGGGG TACTGACCGA GGTATAAATG AGGGAAATAC 281 CATATCATCG TATGAAGATC TAGAGAGAAT ACATATTCCC CCATATATTG ACTGTATTTC 7792 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATATCATCG TATGAAGATC TAGAGAGAAT ACATATTCCC CCATATATTG ACTGTATTTC 341 TCAGGGAGTT TGCACAGTAA TGGCATCCTA CTCTAAATGG AATGGAAGCC ACCTGCATTC 7852 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCAGGGAGTT TGCACAGTAA TGGCATCCTA CTCTAAATGG AATGGAAGCC ACCTGCATTC 401 TAGCCACTTT CTTCTTACTG AAGTTTTGAA AGGGAAGCTC GGATTTAAGG TAAGGATTGC 7912 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| TAGCCACTTT CTTCTTACTG AAGTTTTGAA AGGGAAGCTC GGATTTAAG. .......... 450 CTGTTCTCTT AATGCTCTAT GGTTCATTTG AAGTCCAAAT TTTGGACCAT TAGTTCAACA 7972 .......... .......... .......... .......... .......... .......... 450 TAAAAATCCT CTAGATTGTT AGATGCTTTT CTCATTTCCT TACCATGCTT AGTAGGGGAA 8032 .......... .......... .......... .......... .......... .......... 450 GTGATTGAAC ATATTGCGGT TCCAAAATGC TGAGTTTCAG GGCCCATTTT TGATCGGTAT 8092 .......... .......... .......... .......... .......... .......... 450 TGTTCTTTAA AATAATGTAG AAAACTAATC AAATTGGTCT GAAGCCTGCA CATGTTTGGA 8152 .......... .......... .......... .......... .......... .......... 450 CTTTGTATTC AGCAAACACA AAAGATTCTC TCAGCAAAGA GCTAGAGAAG TTCATGTGGC 8212 .......... .......... .......... .......... .......... .......... 450 TTGGAGTTTG TTCTACTTAG TTTAAACTTC ACCAAGCCGA AAGTGTAAAA ACTTGTTTCG 8272 .......... .......... .......... .......... .......... .......... 450 ATGTGCTTGC TTCAACTTAC AAAGGAGTCG GTAAGGCAAA GAGAGTGGTA AGTACTCCTT 8332 .......... .......... .......... .......... .......... .......... 450 TGTCCTTAAC AAGAGGTCTA GGGTTCGAGT CCCCTTGGGT ACGGAGTCGC CTTTGTTAGG 8392 .......... .......... .......... .......... .......... .......... 450 GAGTGCTTTA CCCCAATGTG GGACTTTCCG ACGCGAATCC GAATTTAGTC GGGCTCCAAT 8452 .......... .......... .......... .......... .......... .......... 450 GTGGGTAGGG GACACTGGAT GGGAAACCAA AAAAAAAAGG TATGGTTAAG GGGATTAAGA 8512 .......... .......... .......... .......... .......... .......... 450 AACAATGTCT CTCTTTTATC TGAATCTGGT TGCGTGGAAT TTTGTTATTG TTTATTTATA 8572 .......... .......... .......... .......... .......... .......... 450 TTTTACCTCG ATTTGAATGA AATGCTATGC ACTAATGTTC TATTTGTTTG TCAAGTTGCT 8632 .......... .......... .......... .......... .......... .......... 450 AGAATATGAT TGGCTTAAAG ATCACATACA CTGCAAGAAT CTGAATGCTA ACTCTTGTAG 8692 .......... .......... .......... .......... .......... .......... 450 GGCTTTGTTA TTTCTGATTC CGAAGGAATT GACCGATTTT TCCATCCTCA TGGATCTAAC 8752 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGCTTTGTTA TTTCTGATTC CGAAGGAATT GACCGATTTT TCCATCCTCA TGGATCTAAC 510 TATGACCAAA GTATTTTGGC AGCAATCAAT GCAGGGATTG ACATGGTACA TAAAACCTTG 8812 |||||||||| |||||||||| |||||||||| |||||||||| ||||| TATGACCAAA GTATTTTGGC AGCAATCAAT GCAGGGATTG ACATG..... .......... 555 TTTTAAGAGT TATTTTGTCT TTGCATGAGT TATTTTTGTT CTTACTGTGT TAGATTTTTT 8872 .......... .......... .......... .......... .......... .......... 555 GCAGGTGATG GTTCCTTTTC GGTATCAATT ATTTCTCGAT CATTTGAAAT ATCTTGTGGA 8932 |||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ....GTGATG GTTCCTTTTC GGTATCAATT ATTTCTCGAT CATTTGAAAT ATCTTGTGGA 611 ATCTGGGAAT ATTCCAATGA CC 8954 |||||||||| |||||||||| || ATCTGGGAAT ATTCCAATGA CC 633 hqPGS_C06HBa0054K13.1-4+_SGN-E371110+ (6413 6472,7170 7315,7658 7901,8693 8797,8877 8954) ******************************************************************************** EST sequence 15 +strand 613 n (File: SGN-E270921+) 1 GTGACTGCTC TGGAAGTCAG GGCTTGTGGC ATTAACTATA CTTTTGCTCC CTGTGTTGCT 61 GTATGTAGGG ATCCCAGGTG GGGAAGATGC TATGAGAGTT ATGGCGAAGA CACCGAACTT 121 ATTAGGAAGA TGACCTCAAT TGTCACAGGC TTGCAAGGGC AACCACCTCC TGGATACCCC 181 CAAAACTATC CTTTTCTAGC TGGAAGAGAC AAGGTTGTTG CCTGTGCAAA GCACTTTGTT 241 GGAGATGGGG GTACTGACCG AGGTATAAAT GAGGGAAATA CCATATCATC GTATGAAGAT 301 CTAGAGAGAA TACATATTCC CCCATATATT GACTGTATTT CTCAGGGAGT TTGCACAGTA 361 ATGGCATCCT ACTCTAAATG GAATGGAAGC CACCTGCATT CTAGCCACTT TCTTCTTACT 421 GAAGTTTTGA AAGGGAAGCT CGGATTTAAG GGCTTTGTTA TTTCTGATTC CGAAGGAATT 481 GACCGATTTT TCCATCCTCA TGGATCTAAC TATGACCAAA GTATTTTGGC AGCAATCAAT 541 GCAGGGATTG ACATGGTGAT GGTTCCTTTT CGGTATCAAT TATTTCTCGA TCATTTGAAA 601 TATCTTGTGG AAT Predicted gene structure (within gDNA segment 5705 to 9544): Exon 1 6413 6472 ( 60 n); cDNA 1 60 ( 60 n); score: 0.983 Intron 1 6473 7169 ( 697 n); Pd: 0.977 (s: 0.98), Pa: 1.000 (s: 0.98) Exon 2 7170 7315 ( 146 n); cDNA 61 206 ( 146 n); score: 0.993 Intron 2 7316 7657 ( 342 n); Pd: 0.974 (s: 1.00), Pa: 0.953 (s: 1.00) Exon 3 7658 7901 ( 244 n); cDNA 207 450 ( 244 n); score: 1.000 Intron 3 7902 8692 ( 791 n); Pd: 0.998 (s: 1.00), Pa: 0.587 (s: 1.00) Exon 4 8693 8797 ( 105 n); cDNA 451 555 ( 105 n); score: 1.000 Intron 4 8798 8876 ( 79 n); Pd: 0.998 (s: 1.00), Pa: 0.990 (s: 1.00) Exon 5 8877 8934 ( 58 n); cDNA 556 613 ( 58 n); score: 1.000 MATCH C06HBa0054K13.1-4+ SGN-E270921+ 0.997 613 1.000 C PGS_C06HBa0054K13.1-4+_SGN-E270921+ (6413 6472,7170 7315,7658 7901,8693 8797,8877 8934) Alignment (genomic DNA sequence = upper lines): GTGACTGCTC TTGAAGTCAG GGCTTGTGGC ATTAACTATA CTTTTGCTCC CTGTGTTGCT 6472 |||||||||| | |||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGACTGCTC TGGAAGTCAG GGCTTGTGGC ATTAACTATA CTTTTGCTCC CTGTGTTGCT 60 GTAAGTTGAA CGTGTTACTT GTCCCTTTAT TGTCTTTGTT TTAGGTCAAT TTCATGGATG 6532 .......... .......... .......... .......... .......... .......... 60 AATGAAGTAA AGGAAACATA AGACGTTGGA CATATGTACA CTTAGAGCAA GATGGAAATA 6592 .......... .......... .......... .......... .......... .......... 60 GGATACCCTA AGTATCACAT CAAAATTTAT AATTTGAATT CTTAATTGGT CCTTCCGTTA 6652 .......... .......... .......... .......... .......... .......... 60 CAAATTTTTT GTCCGGTTTT GACTGGGCAT TGAGTTAAAG AAAGTTGCGA AAACTTACAA 6712 .......... .......... .......... .......... .......... .......... 60 ATCTTGTGGT CTTAAGCTAT AAATATGTAG AATTTACCAA AATGCCCTTT AATATTGTGT 6772 .......... .......... .......... .......... .......... .......... 60 TCTTAAACAT GTCATGTGAG TGACAATTAA AGAGTTGTCA AAAAAGAAAA GATACATTCT 6832 .......... .......... .......... .......... .......... .......... 60 TTTTGAAACG GACTAAAAAG AAAAGTAGGA CAAACAAATT GAAACAGAGG GAGTAGTATG 6892 .......... .......... .......... .......... .......... .......... 60 TTGCTAACTG AGACAAGAGA AACATGATTT GTCGTTTTTC TTTTTGGGAA TTCTTGGTTA 6952 .......... .......... .......... .......... .......... .......... 60 AAATTTTTAT GTTCCCAGTA CCTCGTAACT GCTATCTCTC TAGAAGTAGT ACTTGTTTTT 7012 .......... .......... .......... .......... .......... .......... 60 TTTTTGTTTG TTTGAGAAGA TAAGCAGCTT GTATATTGAT AAAGAGAAAC TATGTAGTAC 7072 .......... .......... .......... .......... .......... .......... 60 CAAGCTGATG CTGAGCAATA CCTCTCTAGT TGTTATCTCT TTTTAACTCT ATTGTCTTGA 7132 .......... .......... .......... .......... .......... .......... 60 GGCATCTTGA CTTCTTCATT TAAATAATGT GAAACAGGTA TGTAGAGATC CCAGGTGGGG 7192 ||| ||||| |||| |||||||||| .......... .......... .......... .......GTA TGTAGGGATC CCAGGTGGGG 83 AAGATGCTAT GAGAGTTATG GCGAAGACAC CGAACTTATT AGGAAGATGA CCTCAATTGT 7252 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGATGCTAT GAGAGTTATG GCGAAGACAC CGAACTTATT AGGAAGATGA CCTCAATTGT 143 CACAGGCTTG CAAGGGCAAC CACCTCCTGG ATACCCCCAA AACTATCCTT TTCTAGCTGG 7312 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CACAGGCTTG CAAGGGCAAC CACCTCCTGG ATACCCCCAA AACTATCCTT TTCTAGCTGG 203 AAGGTAGTAG AAGTTGCCAT AAAACAAGTT CCAAAATTTT GTATGCTTCT CTGAATATAT 7372 ||| AAG....... .......... .......... .......... .......... .......... 206 ATAAAATTTA TTTCTCTTGT ATTTTACAAC CTATAATCTT AAGTCTTATG TGCATTCAAA 7432 .......... .......... .......... .......... .......... .......... 206 TGCTATTCCA CATGTTGCAA TTTTCAGCAG AAAAGTCATT AGGGAAGGAA AAGTAGAAGC 7492 .......... .......... .......... .......... .......... .......... 206 ATAGCTAGAG TTGAAAATAA AAAAATCAGT GTTGAAAAGT GTGTCTTAGC TATTATTACC 7552 .......... .......... .......... .......... .......... .......... 206 TTATTGTTGA TCATTCGCCA GATACTTCTA CAGCTTTCTA CTTTTGTATT TTTTGTTCTC 7612 .......... .......... .......... .......... .......... .......... 206 CTAATGGCAA GGATCTCTTT GGACTGATTG ATGAATTTAC TCCAGAGACA AGGTTGTTGC 7672 ||||| |||||||||| .......... .......... .......... .......... .....AGACA AGGTTGTTGC 221 CTGTGCAAAG CACTTTGTTG GAGATGGGGG TACTGACCGA GGTATAAATG AGGGAAATAC 7732 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGTGCAAAG CACTTTGTTG GAGATGGGGG TACTGACCGA GGTATAAATG AGGGAAATAC 281 CATATCATCG TATGAAGATC TAGAGAGAAT ACATATTCCC CCATATATTG ACTGTATTTC 7792 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATATCATCG TATGAAGATC TAGAGAGAAT ACATATTCCC CCATATATTG ACTGTATTTC 341 TCAGGGAGTT TGCACAGTAA TGGCATCCTA CTCTAAATGG AATGGAAGCC ACCTGCATTC 7852 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCAGGGAGTT TGCACAGTAA TGGCATCCTA CTCTAAATGG AATGGAAGCC ACCTGCATTC 401 TAGCCACTTT CTTCTTACTG AAGTTTTGAA AGGGAAGCTC GGATTTAAGG TAAGGATTGC 7912 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| TAGCCACTTT CTTCTTACTG AAGTTTTGAA AGGGAAGCTC GGATTTAAG. .......... 450 CTGTTCTCTT AATGCTCTAT GGTTCATTTG AAGTCCAAAT TTTGGACCAT TAGTTCAACA 7972 .......... .......... .......... .......... .......... .......... 450 TAAAAATCCT CTAGATTGTT AGATGCTTTT CTCATTTCCT TACCATGCTT AGTAGGGGAA 8032 .......... .......... .......... .......... .......... .......... 450 GTGATTGAAC ATATTGCGGT TCCAAAATGC TGAGTTTCAG GGCCCATTTT TGATCGGTAT 8092 .......... .......... .......... .......... .......... .......... 450 TGTTCTTTAA AATAATGTAG AAAACTAATC AAATTGGTCT GAAGCCTGCA CATGTTTGGA 8152 .......... .......... .......... .......... .......... .......... 450 CTTTGTATTC AGCAAACACA AAAGATTCTC TCAGCAAAGA GCTAGAGAAG TTCATGTGGC 8212 .......... .......... .......... .......... .......... .......... 450 TTGGAGTTTG TTCTACTTAG TTTAAACTTC ACCAAGCCGA AAGTGTAAAA ACTTGTTTCG 8272 .......... .......... .......... .......... .......... .......... 450 ATGTGCTTGC TTCAACTTAC AAAGGAGTCG GTAAGGCAAA GAGAGTGGTA AGTACTCCTT 8332 .......... .......... .......... .......... .......... .......... 450 TGTCCTTAAC AAGAGGTCTA GGGTTCGAGT CCCCTTGGGT ACGGAGTCGC CTTTGTTAGG 8392 .......... .......... .......... .......... .......... .......... 450 GAGTGCTTTA CCCCAATGTG GGACTTTCCG ACGCGAATCC GAATTTAGTC GGGCTCCAAT 8452 .......... .......... .......... .......... .......... .......... 450 GTGGGTAGGG GACACTGGAT GGGAAACCAA AAAAAAAAGG TATGGTTAAG GGGATTAAGA 8512 .......... .......... .......... .......... .......... .......... 450 AACAATGTCT CTCTTTTATC TGAATCTGGT TGCGTGGAAT TTTGTTATTG TTTATTTATA 8572 .......... .......... .......... .......... .......... .......... 450 TTTTACCTCG ATTTGAATGA AATGCTATGC ACTAATGTTC TATTTGTTTG TCAAGTTGCT 8632 .......... .......... .......... .......... .......... .......... 450 AGAATATGAT TGGCTTAAAG ATCACATACA CTGCAAGAAT CTGAATGCTA ACTCTTGTAG 8692 .......... .......... .......... .......... .......... .......... 450 GGCTTTGTTA TTTCTGATTC CGAAGGAATT GACCGATTTT TCCATCCTCA TGGATCTAAC 8752 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGCTTTGTTA TTTCTGATTC CGAAGGAATT GACCGATTTT TCCATCCTCA TGGATCTAAC 510 TATGACCAAA GTATTTTGGC AGCAATCAAT GCAGGGATTG ACATGGTACA TAAAACCTTG 8812 |||||||||| |||||||||| |||||||||| |||||||||| ||||| TATGACCAAA GTATTTTGGC AGCAATCAAT GCAGGGATTG ACATG..... .......... 555 TTTTAAGAGT TATTTTGTCT TTGCATGAGT TATTTTTGTT CTTACTGTGT TAGATTTTTT 8872 .......... .......... .......... .......... .......... .......... 555 GCAGGTGATG GTTCCTTTTC GGTATCAATT ATTTCTCGAT CATTTGAAAT ATCTTGTGGA 8932 |||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ....GTGATG GTTCCTTTTC GGTATCAATT ATTTCTCGAT CATTTGAAAT ATCTTGTGGA 611 AT 8934 || AT 613 hqPGS_C06HBa0054K13.1-4+_SGN-E270921+ (6413 6472,7170 7315,7658 7901,8693 8797,8877 8934) ******************************************************************************** EST sequence 21 +strand 471 n (File: SGN-E276764+) 1 AGATGCTATG AGAGTTATGG CGAAGACACC GAACTTATTA GGAAGATGAC CTCAATTGTC 61 ACAGGCTTGC AAGGGCAACC ACCTCCTGGA TACCCCCAAA ACTATCCTTT TCTAGCTGGA 121 AGAGACAAGG TTGTTGCCTG TGCAAAGCAC TTTGTTGGAG ATGGGGGTAC TGACCGAGGT 181 ATAAATGAGG GAAATACCAT ATCATCGTAT GAAGATCTAG AGAGAATACA TATTCCCCCA 241 TATATTGACT GTATTTCTCA GGGAGTTTGC ACAGTAATGG CATCCTACTC TAAATGGAAT 301 GGAAGCCACC TGCATTCTAG CCACTTTCTT CTTACTGAAG GTTTGAAAGG GAAGCTCGGA 361 TTTAAGGGCT TTGTTATTTC TGATTCCGAA GGAATTGACC GATTTTTCCA TCCTCATGGA 421 TCTAACTATG ACCAAAGTAT TTTGGCAGCA ATCAATGCAG GGATTGACAT G Predicted gene structure (within gDNA segment 6594 to 9407): Exon 1 7194 7315 ( 122 n); cDNA 1 122 ( 122 n); score: 1.000 Intron 1 7316 7657 ( 342 n); Pd: 0.974 (s: 1.00), Pa: 0.953 (s: 1.00) Exon 2 7658 7901 ( 244 n); cDNA 123 366 ( 244 n); score: 0.996 Intron 2 7902 8692 ( 791 n); Pd: 0.998 (s: 0.98), Pa: 0.587 (s: 1.00) Exon 3 8693 8797 ( 105 n); cDNA 367 471 ( 105 n); score: 1.000 MATCH C06HBa0054K13.1-4+ SGN-E276764+ 0.998 471 1.000 C PGS_C06HBa0054K13.1-4+_SGN-E276764+ (7194 7315,7658 7901,8693 8797) Alignment (genomic DNA sequence = upper lines): AGATGCTATG AGAGTTATGG CGAAGACACC GAACTTATTA GGAAGATGAC CTCAATTGTC 7253 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGATGCTATG AGAGTTATGG CGAAGACACC GAACTTATTA GGAAGATGAC CTCAATTGTC 60 ACAGGCTTGC AAGGGCAACC ACCTCCTGGA TACCCCCAAA ACTATCCTTT TCTAGCTGGA 7313 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACAGGCTTGC AAGGGCAACC ACCTCCTGGA TACCCCCAAA ACTATCCTTT TCTAGCTGGA 120 AGGTAGTAGA AGTTGCCATA AAACAAGTTC CAAAATTTTG TATGCTTCTC TGAATATATA 7373 || AG........ .......... .......... .......... .......... .......... 122 TAAAATTTAT TTCTCTTGTA TTTTACAACC TATAATCTTA AGTCTTATGT GCATTCAAAT 7433 .......... .......... .......... .......... .......... .......... 122 GCTATTCCAC ATGTTGCAAT TTTCAGCAGA AAAGTCATTA GGGAAGGAAA AGTAGAAGCA 7493 .......... .......... .......... .......... .......... .......... 122 TAGCTAGAGT TGAAAATAAA AAAATCAGTG TTGAAAAGTG TGTCTTAGCT ATTATTACCT 7553 .......... .......... .......... .......... .......... .......... 122 TATTGTTGAT CATTCGCCAG ATACTTCTAC AGCTTTCTAC TTTTGTATTT TTTGTTCTCC 7613 .......... .......... .......... .......... .......... .......... 122 TAATGGCAAG GATCTCTTTG GACTGATTGA TGAATTTACT CCAGAGACAA GGTTGTTGCC 7673 |||||| |||||||||| .......... .......... .......... .......... ....AGACAA GGTTGTTGCC 138 TGTGCAAAGC ACTTTGTTGG AGATGGGGGT ACTGACCGAG GTATAAATGA GGGAAATACC 7733 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTGCAAAGC ACTTTGTTGG AGATGGGGGT ACTGACCGAG GTATAAATGA GGGAAATACC 198 ATATCATCGT ATGAAGATCT AGAGAGAATA CATATTCCCC CATATATTGA CTGTATTTCT 7793 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATATCATCGT ATGAAGATCT AGAGAGAATA CATATTCCCC CATATATTGA CTGTATTTCT 258 CAGGGAGTTT GCACAGTAAT GGCATCCTAC TCTAAATGGA ATGGAAGCCA CCTGCATTCT 7853 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAGGGAGTTT GCACAGTAAT GGCATCCTAC TCTAAATGGA ATGGAAGCCA CCTGCATTCT 318 AGCCACTTTC TTCTTACTGA AGTTTTGAAA GGGAAGCTCG GATTTAAGGT AAGGATTGCC 7913 |||||||||| |||||||||| || ||||||| |||||||||| |||||||| AGCCACTTTC TTCTTACTGA AGGTTTGAAA GGGAAGCTCG GATTTAAG.. .......... 366 TGTTCTCTTA ATGCTCTATG GTTCATTTGA AGTCCAAATT TTGGACCATT AGTTCAACAT 7973 .......... .......... .......... .......... .......... .......... 366 AAAAATCCTC TAGATTGTTA GATGCTTTTC TCATTTCCTT ACCATGCTTA GTAGGGGAAG 8033 .......... .......... .......... .......... .......... .......... 366 TGATTGAACA TATTGCGGTT CCAAAATGCT GAGTTTCAGG GCCCATTTTT GATCGGTATT 8093 .......... .......... .......... .......... .......... .......... 366 GTTCTTTAAA ATAATGTAGA AAACTAATCA AATTGGTCTG AAGCCTGCAC ATGTTTGGAC 8153 .......... .......... .......... .......... .......... .......... 366 TTTGTATTCA GCAAACACAA AAGATTCTCT CAGCAAAGAG CTAGAGAAGT TCATGTGGCT 8213 .......... .......... .......... .......... .......... .......... 366 TGGAGTTTGT TCTACTTAGT TTAAACTTCA CCAAGCCGAA AGTGTAAAAA CTTGTTTCGA 8273 .......... .......... .......... .......... .......... .......... 366 TGTGCTTGCT TCAACTTACA AAGGAGTCGG TAAGGCAAAG AGAGTGGTAA GTACTCCTTT 8333 .......... .......... .......... .......... .......... .......... 366 GTCCTTAACA AGAGGTCTAG GGTTCGAGTC CCCTTGGGTA CGGAGTCGCC TTTGTTAGGG 8393 .......... .......... .......... .......... .......... .......... 366 AGTGCTTTAC CCCAATGTGG GACTTTCCGA CGCGAATCCG AATTTAGTCG GGCTCCAATG 8453 .......... .......... .......... .......... .......... .......... 366 TGGGTAGGGG ACACTGGATG GGAAACCAAA AAAAAAAGGT ATGGTTAAGG GGATTAAGAA 8513 .......... .......... .......... .......... .......... .......... 366 ACAATGTCTC TCTTTTATCT GAATCTGGTT GCGTGGAATT TTGTTATTGT TTATTTATAT 8573 .......... .......... .......... .......... .......... .......... 366 TTTACCTCGA TTTGAATGAA ATGCTATGCA CTAATGTTCT ATTTGTTTGT CAAGTTGCTA 8633 .......... .......... .......... .......... .......... .......... 366 GAATATGATT GGCTTAAAGA TCACATACAC TGCAAGAATC TGAATGCTAA CTCTTGTAGG 8693 | .......... .......... .......... .......... .......... .........G 367 GCTTTGTTAT TTCTGATTCC GAAGGAATTG ACCGATTTTT CCATCCTCAT GGATCTAACT 8753 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTTTGTTAT TTCTGATTCC GAAGGAATTG ACCGATTTTT CCATCCTCAT GGATCTAACT 427 ATGACCAAAG TATTTTGGCA GCAATCAATG CAGGGATTGA CATG 8797 |||||||||| |||||||||| |||||||||| |||||||||| |||| ATGACCAAAG TATTTTGGCA GCAATCAATG CAGGGATTGA CATG 471 hqPGS_C06HBa0054K13.1-4+_SGN-E276764+ (7194 7315,7658 7901,8693 8797) ******************************************************************************** EST sequence 8 +strand 729 n (File: SGN-E262875+) 1 TTATGGCGAA GACACCGAAC TTATTAGGAA GATGACCTCA ATTGTCACAG GCTTGCAAGG 61 GCAACCACCT CCTGGATACC CCCAAAACTA TCCTTTTCTA GCTGGAAGAG ACAAGGTTGT 121 TGCCTGTGCA AAGCACTTTG TTGGAGATGG GGGTACTGAC CGAGGTATAA ATGAGGGAAA 181 TACCATATCA TCGTATGAAG ATCTAGAGAG AATACATATT CCCCCATATA TTGACTGTAT 241 TTCTCAGGGA GTTTGCACAG TAATGGCATC CTACTCTAAA TGGAATGGAA GCCACCTGCA 301 TTCTAGCCAC TTTCTTCTTA CTGAAGTTTT GAAAGGGAAG CTCGGATTTA AGGGCTTTGT 361 TATTTCTGAT TCCGAAGGAA TTGACCGATT TTTCCATCCT CATGGATCTA ACTATGACCA 421 AAGTATTTTG GCAGCAATCA ATGCAGGGAT TGACATGGTG ATGGTTCCTT TTCGGTATCA 481 ATTATTTCTC GATCATTTGA AATATCTTGT GGAATCTGGG AATATTCCAA TGACCAGAAT 541 TGATGATGCT GTTGAAAGGA TCCTGAGAGT TAAGTTTGTT TCCGGAGCTT TTGAGAACCC 601 TCTGAGTGAT AGGTCATTGT TGGATACCGT TGGTTGTCAT CAACATCGCG AATTAGCACG 661 TGAAGCAGTT CGCAAATCAC TGGTTCTTCT AAAGAATGGG AAGGATGTAA CAAAACCATT 721 TCTTCCGCT Predicted gene structure (within gDNA segment 6608 to 10493): Exon 1 7208 7315 ( 108 n); cDNA 1 108 ( 108 n); score: 1.000 Intron 1 7316 7657 ( 342 n); Pd: 0.974 (s: 1.00), Pa: 0.953 (s: 1.00) Exon 2 7658 7901 ( 244 n); cDNA 109 352 ( 244 n); score: 1.000 Intron 2 7902 8692 ( 791 n); Pd: 0.998 (s: 1.00), Pa: 0.587 (s: 1.00) Exon 3 8693 8797 ( 105 n); cDNA 353 457 ( 105 n); score: 1.000 Intron 3 8798 8876 ( 79 n); Pd: 0.998 (s: 1.00), Pa: 0.990 (s: 1.00) Exon 4 8877 9059 ( 183 n); cDNA 458 640 ( 183 n); score: 1.000 Intron 4 9060 9794 ( 735 n); Pd: 0.921 (s: 1.00), Pa: 0.825 (s: 1.00) Exon 5 9795 9883 ( 89 n); cDNA 641 729 ( 89 n); score: 1.000 MATCH C06HBa0054K13.1-4+ SGN-E262875+ 1.000 729 1.000 C PGS_C06HBa0054K13.1-4+_SGN-E262875+ (7208 7315,7658 7901,8693 8797,8877 9059,9795 9883) Alignment (genomic DNA sequence = upper lines): TTATGGCGAA GACACCGAAC TTATTAGGAA GATGACCTCA ATTGTCACAG GCTTGCAAGG 7267 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTATGGCGAA GACACCGAAC TTATTAGGAA GATGACCTCA ATTGTCACAG GCTTGCAAGG 60 GCAACCACCT CCTGGATACC CCCAAAACTA TCCTTTTCTA GCTGGAAGGT AGTAGAAGTT 7327 |||||||||| |||||||||| |||||||||| |||||||||| |||||||| GCAACCACCT CCTGGATACC CCCAAAACTA TCCTTTTCTA GCTGGAAG.. .......... 108 GCCATAAAAC AAGTTCCAAA ATTTTGTATG CTTCTCTGAA TATATATAAA ATTTATTTCT 7387 .......... .......... .......... .......... .......... .......... 108 CTTGTATTTT ACAACCTATA ATCTTAAGTC TTATGTGCAT TCAAATGCTA TTCCACATGT 7447 .......... .......... .......... .......... .......... .......... 108 TGCAATTTTC AGCAGAAAAG TCATTAGGGA AGGAAAAGTA GAAGCATAGC TAGAGTTGAA 7507 .......... .......... .......... .......... .......... .......... 108 AATAAAAAAA TCAGTGTTGA AAAGTGTGTC TTAGCTATTA TTACCTTATT GTTGATCATT 7567 .......... .......... .......... .......... .......... .......... 108 CGCCAGATAC TTCTACAGCT TTCTACTTTT GTATTTTTTG TTCTCCTAAT GGCAAGGATC 7627 .......... .......... .......... .......... .......... .......... 108 TCTTTGGACT GATTGATGAA TTTACTCCAG AGACAAGGTT GTTGCCTGTG CAAAGCACTT 7687 |||||||||| |||||||||| |||||||||| .......... .......... .......... AGACAAGGTT GTTGCCTGTG CAAAGCACTT 138 TGTTGGAGAT GGGGGTACTG ACCGAGGTAT AAATGAGGGA AATACCATAT CATCGTATGA 7747 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTTGGAGAT GGGGGTACTG ACCGAGGTAT AAATGAGGGA AATACCATAT CATCGTATGA 198 AGATCTAGAG AGAATACATA TTCCCCCATA TATTGACTGT ATTTCTCAGG GAGTTTGCAC 7807 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGATCTAGAG AGAATACATA TTCCCCCATA TATTGACTGT ATTTCTCAGG GAGTTTGCAC 258 AGTAATGGCA TCCTACTCTA AATGGAATGG AAGCCACCTG CATTCTAGCC ACTTTCTTCT 7867 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTAATGGCA TCCTACTCTA AATGGAATGG AAGCCACCTG CATTCTAGCC ACTTTCTTCT 318 TACTGAAGTT TTGAAAGGGA AGCTCGGATT TAAGGTAAGG ATTGCCTGTT CTCTTAATGC 7927 |||||||||| |||||||||| |||||||||| |||| TACTGAAGTT TTGAAAGGGA AGCTCGGATT TAAG...... .......... .......... 352 TCTATGGTTC ATTTGAAGTC CAAATTTTGG ACCATTAGTT CAACATAAAA ATCCTCTAGA 7987 .......... .......... .......... .......... .......... .......... 352 TTGTTAGATG CTTTTCTCAT TTCCTTACCA TGCTTAGTAG GGGAAGTGAT TGAACATATT 8047 .......... .......... .......... .......... .......... .......... 352 GCGGTTCCAA AATGCTGAGT TTCAGGGCCC ATTTTTGATC GGTATTGTTC TTTAAAATAA 8107 .......... .......... .......... .......... .......... .......... 352 TGTAGAAAAC TAATCAAATT GGTCTGAAGC CTGCACATGT TTGGACTTTG TATTCAGCAA 8167 .......... .......... .......... .......... .......... .......... 352 ACACAAAAGA TTCTCTCAGC AAAGAGCTAG AGAAGTTCAT GTGGCTTGGA GTTTGTTCTA 8227 .......... .......... .......... .......... .......... .......... 352 CTTAGTTTAA ACTTCACCAA GCCGAAAGTG TAAAAACTTG TTTCGATGTG CTTGCTTCAA 8287 .......... .......... .......... .......... .......... .......... 352 CTTACAAAGG AGTCGGTAAG GCAAAGAGAG TGGTAAGTAC TCCTTTGTCC TTAACAAGAG 8347 .......... .......... .......... .......... .......... .......... 352 GTCTAGGGTT CGAGTCCCCT TGGGTACGGA GTCGCCTTTG TTAGGGAGTG CTTTACCCCA 8407 .......... .......... .......... .......... .......... .......... 352 ATGTGGGACT TTCCGACGCG AATCCGAATT TAGTCGGGCT CCAATGTGGG TAGGGGACAC 8467 .......... .......... .......... .......... .......... .......... 352 TGGATGGGAA ACCAAAAAAA AAAGGTATGG TTAAGGGGAT TAAGAAACAA TGTCTCTCTT 8527 .......... .......... .......... .......... .......... .......... 352 TTATCTGAAT CTGGTTGCGT GGAATTTTGT TATTGTTTAT TTATATTTTA CCTCGATTTG 8587 .......... .......... .......... .......... .......... .......... 352 AATGAAATGC TATGCACTAA TGTTCTATTT GTTTGTCAAG TTGCTAGAAT ATGATTGGCT 8647 .......... .......... .......... .......... .......... .......... 352 TAAAGATCAC ATACACTGCA AGAATCTGAA TGCTAACTCT TGTAGGGCTT TGTTATTTCT 8707 ||||| |||||||||| .......... .......... .......... .......... .....GGCTT TGTTATTTCT 367 GATTCCGAAG GAATTGACCG ATTTTTCCAT CCTCATGGAT CTAACTATGA CCAAAGTATT 8767 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATTCCGAAG GAATTGACCG ATTTTTCCAT CCTCATGGAT CTAACTATGA CCAAAGTATT 427 TTGGCAGCAA TCAATGCAGG GATTGACATG GTACATAAAA CCTTGTTTTA AGAGTTATTT 8827 |||||||||| |||||||||| |||||||||| TTGGCAGCAA TCAATGCAGG GATTGACATG .......... .......... .......... 457 TGTCTTTGCA TGAGTTATTT TTGTTCTTAC TGTGTTAGAT TTTTTGCAGG TGATGGTTCC 8887 | |||||||||| .......... .......... .......... .......... .........G TGATGGTTCC 468 TTTTCGGTAT CAATTATTTC TCGATCATTT GAAATATCTT GTGGAATCTG GGAATATTCC 8947 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTTCGGTAT CAATTATTTC TCGATCATTT GAAATATCTT GTGGAATCTG GGAATATTCC 528 AATGACCAGA ATTGATGATG CTGTTGAAAG GATCCTGAGA GTTAAGTTTG TTTCCGGAGC 9007 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATGACCAGA ATTGATGATG CTGTTGAAAG GATCCTGAGA GTTAAGTTTG TTTCCGGAGC 588 TTTTGAGAAC CCTCTGAGTG ATAGGTCATT GTTGGATACC GTTGGTTGTC ATGTAAGTCC 9067 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| || TTTTGAGAAC CCTCTGAGTG ATAGGTCATT GTTGGATACC GTTGGTTGTC AT........ 640 GTCTTGTCCA TTTTGACAGA TATTGGCAAA ATATTTATCT TGAATTTTGA CATTAAATAA 9127 .......... .......... .......... .......... .......... .......... 640 GACCTTCATA AGTTTCATTC TATTCTGCCT TTTATCTCAA CAACAAAGTG AACATCTGCT 9187 .......... .......... .......... .......... .......... .......... 640 TCACATCCAT GATGCACGGA CTTCTCAAAA TGATTGCAAG CACCCTTGTT GATGTGACAT 9247 .......... .......... .......... .......... .......... .......... 640 TGGTGTGGGT GTGGGATCCA CGTGGGATTC GGTCAACTTA TCTTGGATGC TTTGACTACA 9307 .......... .......... .......... .......... .......... .......... 640 TCTATGACCA AGAAGTATAG ATTGATTGGC TAATTCATGA GATCTCTGAG TAAAACCCTA 9367 .......... .......... .......... .......... .......... .......... 640 TGTTTATAAA GAAATAAATT TTATTAGTTT TAATTCAATA CCTTTAATTA ATAGAAATAA 9427 .......... .......... .......... .......... .......... .......... 640 ATACTTTGTA TAATGTTAAA ATATACGTTT ATTGGCCTTA TCCCACTTCC CGTATCCGCT 9487 .......... .......... .......... .......... .......... .......... 640 CTCGGATTCA TACCCCCAAA TCCTAAAAGT TCTGTGACGA AGAGTCCGAC CTCTAGATGC 9547 .......... .......... .......... .......... .......... .......... 640 GCACCCATAG TGGGCACCCA AACCCGAGTC TGAGCAACAT AGCTTTTGCA TTGCCCTTAC 9607 .......... .......... .......... .......... .......... .......... 640 AAAAGTTAAA TTATGTGAGT TGGCAAACTG TTTTACCTGT TTTTACAATG TATATACTGC 9667 .......... .......... .......... .......... .......... .......... 640 TAATTCTGTT TGTTTTGTAA AATTATACAT TTTTAAAGAA TGTAGGAGAG AGAGAGAGAG 9727 .......... .......... .......... .......... .......... .......... 640 GAGTTATGTG CAATATATCA GTGCAGAGGC TTCATAGTAG TTTTCACCAT TCTGATAATT 9787 .......... .......... .......... .......... .......... .......... 640 GTTTCAGCAA CATCGCGAAT TAGCACGTGA AGCAGTTCGC AAATCACTGG TTCTTCTAAA 9847 ||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......CAA CATCGCGAAT TAGCACGTGA AGCAGTTCGC AAATCACTGG TTCTTCTAAA 693 GAATGGGAAG GATGTAACAA AACCATTTCT TCCGCT 9883 |||||||||| |||||||||| |||||||||| |||||| GAATGGGAAG GATGTAACAA AACCATTTCT TCCGCT 729 hqPGS_C06HBa0054K13.1-4+_SGN-E262875+ (7208 7315,7658 7901,8693 8797,8877 9059,9795 9883) ******************************************************************************** EST sequence 9 +strand 689 n (File: SGN-E263254+) 1 TTATGGCGAA GACACCGAAC TTATTAGGAA GATGACCTCA ATTGTCACAG GCTTGCAAGG 61 GCAACCACCT CCTGGATACC CCCAAAACTA TCCTTTTCTA GCTGGAAGAG ACAAGGTTGT 121 TGCCTGTGCA AAGCACTTTG TTGGAGATGG GGGTACTGAC CGAGGTATAA ATGAGGGAAA 181 TACCATATCA TCGTATGAAG ATCTAGAGAG AATACATATT CCCCCATATA TTGACTGTAT 241 TTCTCAGGGA GTTTGCACAG TAATGGCATC CTACTCTAAA TGGAATGGAA GCCACCTGCA 301 TTCTAGCCAC TTTCTTCTTA CTGAAGTTTT GAAAGGGAAG CTCGGATTTA AGGGCTTTGT 361 TATTTCTGAT TCCGAAGGAA TTGACCGATT TTTCCATCCT CATGGATCTA ACTATGACCA 421 AAGTATTTTG GCAGCAATCA ATGCAGGGAT TGACATGGTG ATGGTTCCTT TTCGGTATCA 481 ATTATTTCTC GATCATTTGA AATATCTTGT GGAATCTGGG AATATTCCAA TGACCAGAAT 541 TGATGATGCT GTTGAAAGGA TCCTGAGAGT TAAGTTTGTT TCCGGAGCTT TTGAGAACCC 601 TCTGAGTGAT AGGTCATTGT TGGATACCGT TGGTTGTCAT CAACATCGCG AATTAGCACG 661 TGAAGCAGTT CGCAAATCAC TGGTTCTTC Predicted gene structure (within gDNA segment 6608 to 10453): Exon 1 7208 7315 ( 108 n); cDNA 1 108 ( 108 n); score: 1.000 Intron 1 7316 7657 ( 342 n); Pd: 0.974 (s: 1.00), Pa: 0.953 (s: 1.00) Exon 2 7658 7901 ( 244 n); cDNA 109 352 ( 244 n); score: 1.000 Intron 2 7902 8692 ( 791 n); Pd: 0.998 (s: 1.00), Pa: 0.587 (s: 1.00) Exon 3 8693 8797 ( 105 n); cDNA 353 457 ( 105 n); score: 1.000 Intron 3 8798 8876 ( 79 n); Pd: 0.998 (s: 1.00), Pa: 0.990 (s: 1.00) Exon 4 8877 9059 ( 183 n); cDNA 458 640 ( 183 n); score: 1.000 Intron 4 9060 9794 ( 735 n); Pd: 0.921 (s: 1.00), Pa: 0.825 (s: 1.00) Exon 5 9795 9843 ( 49 n); cDNA 641 689 ( 49 n); score: 1.000 MATCH C06HBa0054K13.1-4+ SGN-E263254+ 1.000 689 1.000 C PGS_C06HBa0054K13.1-4+_SGN-E263254+ (7208 7315,7658 7901,8693 8797,8877 9059,9795 9843) Alignment (genomic DNA sequence = upper lines): TTATGGCGAA GACACCGAAC TTATTAGGAA GATGACCTCA ATTGTCACAG GCTTGCAAGG 7267 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTATGGCGAA GACACCGAAC TTATTAGGAA GATGACCTCA ATTGTCACAG GCTTGCAAGG 60 GCAACCACCT CCTGGATACC CCCAAAACTA TCCTTTTCTA GCTGGAAGGT AGTAGAAGTT 7327 |||||||||| |||||||||| |||||||||| |||||||||| |||||||| GCAACCACCT CCTGGATACC CCCAAAACTA TCCTTTTCTA GCTGGAAG.. .......... 108 GCCATAAAAC AAGTTCCAAA ATTTTGTATG CTTCTCTGAA TATATATAAA ATTTATTTCT 7387 .......... .......... .......... .......... .......... .......... 108 CTTGTATTTT ACAACCTATA ATCTTAAGTC TTATGTGCAT TCAAATGCTA TTCCACATGT 7447 .......... .......... .......... .......... .......... .......... 108 TGCAATTTTC AGCAGAAAAG TCATTAGGGA AGGAAAAGTA GAAGCATAGC TAGAGTTGAA 7507 .......... .......... .......... .......... .......... .......... 108 AATAAAAAAA TCAGTGTTGA AAAGTGTGTC TTAGCTATTA TTACCTTATT GTTGATCATT 7567 .......... .......... .......... .......... .......... .......... 108 CGCCAGATAC TTCTACAGCT TTCTACTTTT GTATTTTTTG TTCTCCTAAT GGCAAGGATC 7627 .......... .......... .......... .......... .......... .......... 108 TCTTTGGACT GATTGATGAA TTTACTCCAG AGACAAGGTT GTTGCCTGTG CAAAGCACTT 7687 |||||||||| |||||||||| |||||||||| .......... .......... .......... AGACAAGGTT GTTGCCTGTG CAAAGCACTT 138 TGTTGGAGAT GGGGGTACTG ACCGAGGTAT AAATGAGGGA AATACCATAT CATCGTATGA 7747 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTTGGAGAT GGGGGTACTG ACCGAGGTAT AAATGAGGGA AATACCATAT CATCGTATGA 198 AGATCTAGAG AGAATACATA TTCCCCCATA TATTGACTGT ATTTCTCAGG GAGTTTGCAC 7807 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGATCTAGAG AGAATACATA TTCCCCCATA TATTGACTGT ATTTCTCAGG GAGTTTGCAC 258 AGTAATGGCA TCCTACTCTA AATGGAATGG AAGCCACCTG CATTCTAGCC ACTTTCTTCT 7867 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTAATGGCA TCCTACTCTA AATGGAATGG AAGCCACCTG CATTCTAGCC ACTTTCTTCT 318 TACTGAAGTT TTGAAAGGGA AGCTCGGATT TAAGGTAAGG ATTGCCTGTT CTCTTAATGC 7927 |||||||||| |||||||||| |||||||||| |||| TACTGAAGTT TTGAAAGGGA AGCTCGGATT TAAG...... .......... .......... 352 TCTATGGTTC ATTTGAAGTC CAAATTTTGG ACCATTAGTT CAACATAAAA ATCCTCTAGA 7987 .......... .......... .......... .......... .......... .......... 352 TTGTTAGATG CTTTTCTCAT TTCCTTACCA TGCTTAGTAG GGGAAGTGAT TGAACATATT 8047 .......... .......... .......... .......... .......... .......... 352 GCGGTTCCAA AATGCTGAGT TTCAGGGCCC ATTTTTGATC GGTATTGTTC TTTAAAATAA 8107 .......... .......... .......... .......... .......... .......... 352 TGTAGAAAAC TAATCAAATT GGTCTGAAGC CTGCACATGT TTGGACTTTG TATTCAGCAA 8167 .......... .......... .......... .......... .......... .......... 352 ACACAAAAGA TTCTCTCAGC AAAGAGCTAG AGAAGTTCAT GTGGCTTGGA GTTTGTTCTA 8227 .......... .......... .......... .......... .......... .......... 352 CTTAGTTTAA ACTTCACCAA GCCGAAAGTG TAAAAACTTG TTTCGATGTG CTTGCTTCAA 8287 .......... .......... .......... .......... .......... .......... 352 CTTACAAAGG AGTCGGTAAG GCAAAGAGAG TGGTAAGTAC TCCTTTGTCC TTAACAAGAG 8347 .......... .......... .......... .......... .......... .......... 352 GTCTAGGGTT CGAGTCCCCT TGGGTACGGA GTCGCCTTTG TTAGGGAGTG CTTTACCCCA 8407 .......... .......... .......... .......... .......... .......... 352 ATGTGGGACT TTCCGACGCG AATCCGAATT TAGTCGGGCT CCAATGTGGG TAGGGGACAC 8467 .......... .......... .......... .......... .......... .......... 352 TGGATGGGAA ACCAAAAAAA AAAGGTATGG TTAAGGGGAT TAAGAAACAA TGTCTCTCTT 8527 .......... .......... .......... .......... .......... .......... 352 TTATCTGAAT CTGGTTGCGT GGAATTTTGT TATTGTTTAT TTATATTTTA CCTCGATTTG 8587 .......... .......... .......... .......... .......... .......... 352 AATGAAATGC TATGCACTAA TGTTCTATTT GTTTGTCAAG TTGCTAGAAT ATGATTGGCT 8647 .......... .......... .......... .......... .......... .......... 352 TAAAGATCAC ATACACTGCA AGAATCTGAA TGCTAACTCT TGTAGGGCTT TGTTATTTCT 8707 ||||| |||||||||| .......... .......... .......... .......... .....GGCTT TGTTATTTCT 367 GATTCCGAAG GAATTGACCG ATTTTTCCAT CCTCATGGAT CTAACTATGA CCAAAGTATT 8767 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATTCCGAAG GAATTGACCG ATTTTTCCAT CCTCATGGAT CTAACTATGA CCAAAGTATT 427 TTGGCAGCAA TCAATGCAGG GATTGACATG GTACATAAAA CCTTGTTTTA AGAGTTATTT 8827 |||||||||| |||||||||| |||||||||| TTGGCAGCAA TCAATGCAGG GATTGACATG .......... .......... .......... 457 TGTCTTTGCA TGAGTTATTT TTGTTCTTAC TGTGTTAGAT TTTTTGCAGG TGATGGTTCC 8887 | |||||||||| .......... .......... .......... .......... .........G TGATGGTTCC 468 TTTTCGGTAT CAATTATTTC TCGATCATTT GAAATATCTT GTGGAATCTG GGAATATTCC 8947 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTTCGGTAT CAATTATTTC TCGATCATTT GAAATATCTT GTGGAATCTG GGAATATTCC 528 AATGACCAGA ATTGATGATG CTGTTGAAAG GATCCTGAGA GTTAAGTTTG TTTCCGGAGC 9007 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATGACCAGA ATTGATGATG CTGTTGAAAG GATCCTGAGA GTTAAGTTTG TTTCCGGAGC 588 TTTTGAGAAC CCTCTGAGTG ATAGGTCATT GTTGGATACC GTTGGTTGTC ATGTAAGTCC 9067 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| || TTTTGAGAAC CCTCTGAGTG ATAGGTCATT GTTGGATACC GTTGGTTGTC AT........ 640 GTCTTGTCCA TTTTGACAGA TATTGGCAAA ATATTTATCT TGAATTTTGA CATTAAATAA 9127 .......... .......... .......... .......... .......... .......... 640 GACCTTCATA AGTTTCATTC TATTCTGCCT TTTATCTCAA CAACAAAGTG AACATCTGCT 9187 .......... .......... .......... .......... .......... .......... 640 TCACATCCAT GATGCACGGA CTTCTCAAAA TGATTGCAAG CACCCTTGTT GATGTGACAT 9247 .......... .......... .......... .......... .......... .......... 640 TGGTGTGGGT GTGGGATCCA CGTGGGATTC GGTCAACTTA TCTTGGATGC TTTGACTACA 9307 .......... .......... .......... .......... .......... .......... 640 TCTATGACCA AGAAGTATAG ATTGATTGGC TAATTCATGA GATCTCTGAG TAAAACCCTA 9367 .......... .......... .......... .......... .......... .......... 640 TGTTTATAAA GAAATAAATT TTATTAGTTT TAATTCAATA CCTTTAATTA ATAGAAATAA 9427 .......... .......... .......... .......... .......... .......... 640 ATACTTTGTA TAATGTTAAA ATATACGTTT ATTGGCCTTA TCCCACTTCC CGTATCCGCT 9487 .......... .......... .......... .......... .......... .......... 640 CTCGGATTCA TACCCCCAAA TCCTAAAAGT TCTGTGACGA AGAGTCCGAC CTCTAGATGC 9547 .......... .......... .......... .......... .......... .......... 640 GCACCCATAG TGGGCACCCA AACCCGAGTC TGAGCAACAT AGCTTTTGCA TTGCCCTTAC 9607 .......... .......... .......... .......... .......... .......... 640 AAAAGTTAAA TTATGTGAGT TGGCAAACTG TTTTACCTGT TTTTACAATG TATATACTGC 9667 .......... .......... .......... .......... .......... .......... 640 TAATTCTGTT TGTTTTGTAA AATTATACAT TTTTAAAGAA TGTAGGAGAG AGAGAGAGAG 9727 .......... .......... .......... .......... .......... .......... 640 GAGTTATGTG CAATATATCA GTGCAGAGGC TTCATAGTAG TTTTCACCAT TCTGATAATT 9787 .......... .......... .......... .......... .......... .......... 640 GTTTCAGCAA CATCGCGAAT TAGCACGTGA AGCAGTTCGC AAATCACTGG TTCTTC 9843 ||| |||||||||| |||||||||| |||||||||| |||||||||| |||||| .......CAA CATCGCGAAT TAGCACGTGA AGCAGTTCGC AAATCACTGG TTCTTC 689 hqPGS_C06HBa0054K13.1-4+_SGN-E263254+ (7208 7315,7658 7901,8693 8797,8877 9059,9795 9843) ******************************************************************************** EST sequence 19 +strand 409 n (File: SGN-E274870+) 1 AGGCTTGCAA GGCCAACCAC CTCCTGGATA CCCCCAAAAC TATCCTTTTC TAGCTGGAAG 61 AGACAAGGTT GTTGCCTGTG CAAAGCACTT TGTTGGAGAT GGGGGTACTG ACCGAGGTAT 121 AAATGAGGGA AATACCATAT CATCGTATGA AGATCTAGAG AGAATACATA TTCCCCCATA 181 TATTGACTGT ATTTCTCAGG GAGTTTGCAC AGTAATGGCA TCCTACTCTA AATGGAATGG 241 AAGCCACCTG CATTCTAGCC ACTTTCTTCT TACTGAAGTT TTGAAAGGGA AGCTCGGATT 301 TAAGGGCTTT GTTATTTCTG ATTCCGAAGG AATTGACCGA TTTTTCCATC CTCATGGATC 361 TAACTATGAC CAAAGTATTT TGGCAGCAAT CAATGCAGGG ATTGACATG Predicted gene structure (within gDNA segment 6539 to 9407): Exon 1 7256 7315 ( 60 n); cDNA 1 60 ( 60 n); score: 0.983 Intron 1 7316 7657 ( 342 n); Pd: 0.974 (s: 0.98), Pa: 0.953 (s: 1.00) Exon 2 7658 7901 ( 244 n); cDNA 61 304 ( 244 n); score: 1.000 Intron 2 7902 8692 ( 791 n); Pd: 0.998 (s: 1.00), Pa: 0.587 (s: 1.00) Exon 3 8693 8797 ( 105 n); cDNA 305 409 ( 105 n); score: 1.000 MATCH C06HBa0054K13.1-4+ SGN-E274870+ 0.998 409 1.000 C PGS_C06HBa0054K13.1-4+_SGN-E274870+ (7256 7315,7658 7901,8693 8797) Alignment (genomic DNA sequence = upper lines): AGGCTTGCAA GGGCAACCAC CTCCTGGATA CCCCCAAAAC TATCCTTTTC TAGCTGGAAG 7315 |||||||||| || ||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGCTTGCAA GGCCAACCAC CTCCTGGATA CCCCCAAAAC TATCCTTTTC TAGCTGGAAG 60 GTAGTAGAAG TTGCCATAAA ACAAGTTCCA AAATTTTGTA TGCTTCTCTG AATATATATA 7375 .......... .......... .......... .......... .......... .......... 60 AAATTTATTT CTCTTGTATT TTACAACCTA TAATCTTAAG TCTTATGTGC ATTCAAATGC 7435 .......... .......... .......... .......... .......... .......... 60 TATTCCACAT GTTGCAATTT TCAGCAGAAA AGTCATTAGG GAAGGAAAAG TAGAAGCATA 7495 .......... .......... .......... .......... .......... .......... 60 GCTAGAGTTG AAAATAAAAA AATCAGTGTT GAAAAGTGTG TCTTAGCTAT TATTACCTTA 7555 .......... .......... .......... .......... .......... .......... 60 TTGTTGATCA TTCGCCAGAT ACTTCTACAG CTTTCTACTT TTGTATTTTT TGTTCTCCTA 7615 .......... .......... .......... .......... .......... .......... 60 ATGGCAAGGA TCTCTTTGGA CTGATTGATG AATTTACTCC AGAGACAAGG TTGTTGCCTG 7675 |||||||| |||||||||| .......... .......... .......... .......... ..AGACAAGG TTGTTGCCTG 78 TGCAAAGCAC TTTGTTGGAG ATGGGGGTAC TGACCGAGGT ATAAATGAGG GAAATACCAT 7735 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCAAAGCAC TTTGTTGGAG ATGGGGGTAC TGACCGAGGT ATAAATGAGG GAAATACCAT 138 ATCATCGTAT GAAGATCTAG AGAGAATACA TATTCCCCCA TATATTGACT GTATTTCTCA 7795 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCATCGTAT GAAGATCTAG AGAGAATACA TATTCCCCCA TATATTGACT GTATTTCTCA 198 GGGAGTTTGC ACAGTAATGG CATCCTACTC TAAATGGAAT GGAAGCCACC TGCATTCTAG 7855 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGGAGTTTGC ACAGTAATGG CATCCTACTC TAAATGGAAT GGAAGCCACC TGCATTCTAG 258 CCACTTTCTT CTTACTGAAG TTTTGAAAGG GAAGCTCGGA TTTAAGGTAA GGATTGCCTG 7915 |||||||||| |||||||||| |||||||||| |||||||||| |||||| CCACTTTCTT CTTACTGAAG TTTTGAAAGG GAAGCTCGGA TTTAAG.... .......... 304 TTCTCTTAAT GCTCTATGGT TCATTTGAAG TCCAAATTTT GGACCATTAG TTCAACATAA 7975 .......... .......... .......... .......... .......... .......... 304 AAATCCTCTA GATTGTTAGA TGCTTTTCTC ATTTCCTTAC CATGCTTAGT AGGGGAAGTG 8035 .......... .......... .......... .......... .......... .......... 304 ATTGAACATA TTGCGGTTCC AAAATGCTGA GTTTCAGGGC CCATTTTTGA TCGGTATTGT 8095 .......... .......... .......... .......... .......... .......... 304 TCTTTAAAAT AATGTAGAAA ACTAATCAAA TTGGTCTGAA GCCTGCACAT GTTTGGACTT 8155 .......... .......... .......... .......... .......... .......... 304 TGTATTCAGC AAACACAAAA GATTCTCTCA GCAAAGAGCT AGAGAAGTTC ATGTGGCTTG 8215 .......... .......... .......... .......... .......... .......... 304 GAGTTTGTTC TACTTAGTTT AAACTTCACC AAGCCGAAAG TGTAAAAACT TGTTTCGATG 8275 .......... .......... .......... .......... .......... .......... 304 TGCTTGCTTC AACTTACAAA GGAGTCGGTA AGGCAAAGAG AGTGGTAAGT ACTCCTTTGT 8335 .......... .......... .......... .......... .......... .......... 304 CCTTAACAAG AGGTCTAGGG TTCGAGTCCC CTTGGGTACG GAGTCGCCTT TGTTAGGGAG 8395 .......... .......... .......... .......... .......... .......... 304 TGCTTTACCC CAATGTGGGA CTTTCCGACG CGAATCCGAA TTTAGTCGGG CTCCAATGTG 8455 .......... .......... .......... .......... .......... .......... 304 GGTAGGGGAC ACTGGATGGG AAACCAAAAA AAAAAGGTAT GGTTAAGGGG ATTAAGAAAC 8515 .......... .......... .......... .......... .......... .......... 304 AATGTCTCTC TTTTATCTGA ATCTGGTTGC GTGGAATTTT GTTATTGTTT ATTTATATTT 8575 .......... .......... .......... .......... .......... .......... 304 TACCTCGATT TGAATGAAAT GCTATGCACT AATGTTCTAT TTGTTTGTCA AGTTGCTAGA 8635 .......... .......... .......... .......... .......... .......... 304 ATATGATTGG CTTAAAGATC ACATACACTG CAAGAATCTG AATGCTAACT CTTGTAGGGC 8695 ||| .......... .......... .......... .......... .......... .......GGC 307 TTTGTTATTT CTGATTCCGA AGGAATTGAC CGATTTTTCC ATCCTCATGG ATCTAACTAT 8755 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTGTTATTT CTGATTCCGA AGGAATTGAC CGATTTTTCC ATCCTCATGG ATCTAACTAT 367 GACCAAAGTA TTTTGGCAGC AATCAATGCA GGGATTGACA TG 8797 |||||||||| |||||||||| |||||||||| |||||||||| || GACCAAAGTA TTTTGGCAGC AATCAATGCA GGGATTGACA TG 409 hqPGS_C06HBa0054K13.1-4+_SGN-E274870+ (7256 7315,7658 7901,8693 8797) ******************************************************************************** EST sequence 14 +strand 546 n (File: SGN-E250755+) 1 GAAGAGACAA GGTTGTTGCC TGTGTAAAGC ACTTTGTTGG AGATGGGGGT ACTGAGCGAG 61 GTATAAATGA GGGAAATACC ATATCATCGT ATGAAGATCT AGAGAGAATA CATATTCGCC 121 CATATATTGA CTGTATTTCT CAGGGAGTTT GCACAGTAAT GGCATCCTAC TCTAAATGGA 181 ATGGAAGCCA CCTGCATTCT AGCCACTTTC TTCTTACTGA AGTTTTGAAA GGGAAGCTCG 241 GATTTAAGGG CTTTGTTATT TCTGATTCCG AAGGAATTGA CCGATTTTTC CATCCTCATG 301 GATCTAACTA TGACCAAAGT ATTTTGGCAG CAATCAATGC AGGGATTGAC ATGGTGATGG 361 TTCCTTTTCG GTATCAATTA TTTCTCGATC ATTTGAAATA TCTTGCGGAA TCTGGGAATA 421 TTCCAATGAC CAGAATTGAT GATGCTGTTG AAAGGATCCT GAGAGTTAAG TTTGTTTCCG 481 GAGCTTTTGA GAACCCTCTG AGTGATACGT CATTGTTGGA TACCGTTGGT TGTCATCAAC 541 ATCGCG Predicted gene structure (within gDNA segment 7036 to 9769): Exon 1 7658 7901 ( 244 n); cDNA 5 248 ( 244 n); score: 0.988 Intron 1 7902 8692 ( 791 n); Pd: 0.998 (s: 1.00), Pa: 0.587 (s: 1.00) Exon 2 8693 8797 ( 105 n); cDNA 249 353 ( 105 n); score: 1.000 Intron 2 8798 8876 ( 79 n); Pd: 0.998 (s: 1.00), Pa: 0.990 (s: 1.00) Exon 3 8877 9059 ( 183 n); cDNA 354 536 ( 183 n); score: 0.989 Intron 3 9060 9581 ( 522 n); Pd: 0.921 (s: 0.98), Pa: 0.000 (s: 0) Exon 4 9582 9590 ( 9 n); cDNA 537 545 ( 9 n); score: 0.889 MATCH C06HBa0054K13.1-4+ SGN-E250755+ 0.991 541 0.991 C PGS_C06HBa0054K13.1-4+_SGN-E250755+ (7658 7901,8693 8797,8877 9059,9582 9590) Alignment (genomic DNA sequence = upper lines): AGACAAGGTT GTTGCCTGTG CAAAGCACTT TGTTGGAGAT GGGGGTACTG ACCGAGGTAT 7717 |||||||||| |||||||||| ||||||||| |||||||||| |||||||||| | |||||||| AGACAAGGTT GTTGCCTGTG TAAAGCACTT TGTTGGAGAT GGGGGTACTG AGCGAGGTAT 64 AAATGAGGGA AATACCATAT CATCGTATGA AGATCTAGAG AGAATACATA TTCCCCCATA 7777 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||| |||||| AAATGAGGGA AATACCATAT CATCGTATGA AGATCTAGAG AGAATACATA TTCGCCCATA 124 TATTGACTGT ATTTCTCAGG GAGTTTGCAC AGTAATGGCA TCCTACTCTA AATGGAATGG 7837 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATTGACTGT ATTTCTCAGG GAGTTTGCAC AGTAATGGCA TCCTACTCTA AATGGAATGG 184 AAGCCACCTG CATTCTAGCC ACTTTCTTCT TACTGAAGTT TTGAAAGGGA AGCTCGGATT 7897 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGCCACCTG CATTCTAGCC ACTTTCTTCT TACTGAAGTT TTGAAAGGGA AGCTCGGATT 244 TAAGGTAAGG ATTGCCTGTT CTCTTAATGC TCTATGGTTC ATTTGAAGTC CAAATTTTGG 7957 |||| TAAG...... .......... .......... .......... .......... .......... 248 ACCATTAGTT CAACATAAAA ATCCTCTAGA TTGTTAGATG CTTTTCTCAT TTCCTTACCA 8017 .......... .......... .......... .......... .......... .......... 248 TGCTTAGTAG GGGAAGTGAT TGAACATATT GCGGTTCCAA AATGCTGAGT TTCAGGGCCC 8077 .......... .......... .......... .......... .......... .......... 248 ATTTTTGATC GGTATTGTTC TTTAAAATAA TGTAGAAAAC TAATCAAATT GGTCTGAAGC 8137 .......... .......... .......... .......... .......... .......... 248 CTGCACATGT TTGGACTTTG TATTCAGCAA ACACAAAAGA TTCTCTCAGC AAAGAGCTAG 8197 .......... .......... .......... .......... .......... .......... 248 AGAAGTTCAT GTGGCTTGGA GTTTGTTCTA CTTAGTTTAA ACTTCACCAA GCCGAAAGTG 8257 .......... .......... .......... .......... .......... .......... 248 TAAAAACTTG TTTCGATGTG CTTGCTTCAA CTTACAAAGG AGTCGGTAAG GCAAAGAGAG 8317 .......... .......... .......... .......... .......... .......... 248 TGGTAAGTAC TCCTTTGTCC TTAACAAGAG GTCTAGGGTT CGAGTCCCCT TGGGTACGGA 8377 .......... .......... .......... .......... .......... .......... 248 GTCGCCTTTG TTAGGGAGTG CTTTACCCCA ATGTGGGACT TTCCGACGCG AATCCGAATT 8437 .......... .......... .......... .......... .......... .......... 248 TAGTCGGGCT CCAATGTGGG TAGGGGACAC TGGATGGGAA ACCAAAAAAA AAAGGTATGG 8497 .......... .......... .......... .......... .......... .......... 248 TTAAGGGGAT TAAGAAACAA TGTCTCTCTT TTATCTGAAT CTGGTTGCGT GGAATTTTGT 8557 .......... .......... .......... .......... .......... .......... 248 TATTGTTTAT TTATATTTTA CCTCGATTTG AATGAAATGC TATGCACTAA TGTTCTATTT 8617 .......... .......... .......... .......... .......... .......... 248 GTTTGTCAAG TTGCTAGAAT ATGATTGGCT TAAAGATCAC ATACACTGCA AGAATCTGAA 8677 .......... .......... .......... .......... .......... .......... 248 TGCTAACTCT TGTAGGGCTT TGTTATTTCT GATTCCGAAG GAATTGACCG ATTTTTCCAT 8737 ||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... .....GGCTT TGTTATTTCT GATTCCGAAG GAATTGACCG ATTTTTCCAT 293 CCTCATGGAT CTAACTATGA CCAAAGTATT TTGGCAGCAA TCAATGCAGG GATTGACATG 8797 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCTCATGGAT CTAACTATGA CCAAAGTATT TTGGCAGCAA TCAATGCAGG GATTGACATG 353 GTACATAAAA CCTTGTTTTA AGAGTTATTT TGTCTTTGCA TGAGTTATTT TTGTTCTTAC 8857 .......... .......... .......... .......... .......... .......... 353 TGTGTTAGAT TTTTTGCAGG TGATGGTTCC TTTTCGGTAT CAATTATTTC TCGATCATTT 8917 | |||||||||| |||||||||| |||||||||| |||||||||| .......... .........G TGATGGTTCC TTTTCGGTAT CAATTATTTC TCGATCATTT 394 GAAATATCTT GTGGAATCTG GGAATATTCC AATGACCAGA ATTGATGATG CTGTTGAAAG 8977 |||||||||| | |||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAATATCTT GCGGAATCTG GGAATATTCC AATGACCAGA ATTGATGATG CTGTTGAAAG 454 GATCCTGAGA GTTAAGTTTG TTTCCGGAGC TTTTGAGAAC CCTCTGAGTG ATAGGTCATT 9037 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||| |||||| GATCCTGAGA GTTAAGTTTG TTTCCGGAGC TTTTGAGAAC CCTCTGAGTG ATACGTCATT 514 GTTGGATACC GTTGGTTGTC ATGTAAGTCC GTCTTGTCCA TTTTGACAGA TATTGGCAAA 9097 |||||||||| |||||||||| || GTTGGATACC GTTGGTTGTC AT........ .......... .......... .......... 536 ATATTTATCT TGAATTTTGA CATTAAATAA GACCTTCATA AGTTTCATTC TATTCTGCCT 9157 .......... .......... .......... .......... .......... .......... 536 TTTATCTCAA CAACAAAGTG AACATCTGCT TCACATCCAT GATGCACGGA CTTCTCAAAA 9217 .......... .......... .......... .......... .......... .......... 536 TGATTGCAAG CACCCTTGTT GATGTGACAT TGGTGTGGGT GTGGGATCCA CGTGGGATTC 9277 .......... .......... .......... .......... .......... .......... 536 GGTCAACTTA TCTTGGATGC TTTGACTACA TCTATGACCA AGAAGTATAG ATTGATTGGC 9337 .......... .......... .......... .......... .......... .......... 536 TAATTCATGA GATCTCTGAG TAAAACCCTA TGTTTATAAA GAAATAAATT TTATTAGTTT 9397 .......... .......... .......... .......... .......... .......... 536 TAATTCAATA CCTTTAATTA ATAGAAATAA ATACTTTGTA TAATGTTAAA ATATACGTTT 9457 .......... .......... .......... .......... .......... .......... 536 ATTGGCCTTA TCCCACTTCC CGTATCCGCT CTCGGATTCA TACCCCCAAA TCCTAAAAGT 9517 .......... .......... .......... .......... .......... .......... 536 TCTGTGACGA AGAGTCCGAC CTCTAGATGC GCACCCATAG TGGGCACCCA AACCCGAGTC 9577 .......... .......... .......... .......... .......... .......... 536 TGAGCAACAT AGC 9590 |||||| || ....CAACAT CGC 545 hqPGS_C06HBa0054K13.1-4+_SGN-E250755+ (7658 7901,8693 8797,8877 9059) ******************************************************************************** EST sequence 17 +strand 474 n (File: SGN-E251432+) 1 CAAAGCACTT TGTTGGAGAT GGGGGTACTG ACCGAGGTAT AAATGAGGGA AATACCATAT 61 CATCGTATGA AGATCTAGAG AGAATACATA TTCCCCCATA TATTGACTGT ATTTCTCAGG 121 GAGTTTGCAC AGTAATGGCA TCCTACTCTA AATGGAATGG AAGCCACCTG CATTCTAGCC 181 ACTTTCTTCT TACTGAAGTT TTGAAAGGGA AGCTCGGATT TAAGGGCTTT GTTATTTCTG 241 ATTCCGAAGG AATTGACCGA TTTTTCCATC CTCATGGATC TAACTATGAC CAAAGTATTT 301 TGGCAGCAAT CAATGCAGGG ATTGACATGG TGATGGTTCC TTTTCGGTAT CAATTATTTC 361 TCGATCATTT GAAATATCTT GTGGAATCTG GGAATATTCC AATGACCAGA ATTGATGATG 421 CTGTTGAAAG GATCCTGAGA GTTAAGTTTG TTTCCGGAGC TTTTGAGAAC CCTC Predicted gene structure (within gDNA segment 7078 to 9631): Exon 1 7678 7901 ( 224 n); cDNA 1 224 ( 224 n); score: 1.000 Intron 1 7902 8692 ( 791 n); Pd: 0.998 (s: 1.00), Pa: 0.587 (s: 1.00) Exon 2 8693 8797 ( 105 n); cDNA 225 329 ( 105 n); score: 1.000 Intron 2 8798 8876 ( 79 n); Pd: 0.998 (s: 1.00), Pa: 0.990 (s: 1.00) Exon 3 8877 9021 ( 145 n); cDNA 330 474 ( 145 n); score: 1.000 MATCH C06HBa0054K13.1-4+ SGN-E251432+ 1.000 474 1.000 C PGS_C06HBa0054K13.1-4+_SGN-E251432+ (7678 7901,8693 8797,8877 9021) Alignment (genomic DNA sequence = upper lines): CAAAGCACTT TGTTGGAGAT GGGGGTACTG ACCGAGGTAT AAATGAGGGA AATACCATAT 7737 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAAGCACTT TGTTGGAGAT GGGGGTACTG ACCGAGGTAT AAATGAGGGA AATACCATAT 60 CATCGTATGA AGATCTAGAG AGAATACATA TTCCCCCATA TATTGACTGT ATTTCTCAGG 7797 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATCGTATGA AGATCTAGAG AGAATACATA TTCCCCCATA TATTGACTGT ATTTCTCAGG 120 GAGTTTGCAC AGTAATGGCA TCCTACTCTA AATGGAATGG AAGCCACCTG CATTCTAGCC 7857 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGTTTGCAC AGTAATGGCA TCCTACTCTA AATGGAATGG AAGCCACCTG CATTCTAGCC 180 ACTTTCTTCT TACTGAAGTT TTGAAAGGGA AGCTCGGATT TAAGGTAAGG ATTGCCTGTT 7917 |||||||||| |||||||||| |||||||||| |||||||||| |||| ACTTTCTTCT TACTGAAGTT TTGAAAGGGA AGCTCGGATT TAAG...... .......... 224 CTCTTAATGC TCTATGGTTC ATTTGAAGTC CAAATTTTGG ACCATTAGTT CAACATAAAA 7977 .......... .......... .......... .......... .......... .......... 224 ATCCTCTAGA TTGTTAGATG CTTTTCTCAT TTCCTTACCA TGCTTAGTAG GGGAAGTGAT 8037 .......... .......... .......... .......... .......... .......... 224 TGAACATATT GCGGTTCCAA AATGCTGAGT TTCAGGGCCC ATTTTTGATC GGTATTGTTC 8097 .......... .......... .......... .......... .......... .......... 224 TTTAAAATAA TGTAGAAAAC TAATCAAATT GGTCTGAAGC CTGCACATGT TTGGACTTTG 8157 .......... .......... .......... .......... .......... .......... 224 TATTCAGCAA ACACAAAAGA TTCTCTCAGC AAAGAGCTAG AGAAGTTCAT GTGGCTTGGA 8217 .......... .......... .......... .......... .......... .......... 224 GTTTGTTCTA CTTAGTTTAA ACTTCACCAA GCCGAAAGTG TAAAAACTTG TTTCGATGTG 8277 .......... .......... .......... .......... .......... .......... 224 CTTGCTTCAA CTTACAAAGG AGTCGGTAAG GCAAAGAGAG TGGTAAGTAC TCCTTTGTCC 8337 .......... .......... .......... .......... .......... .......... 224 TTAACAAGAG GTCTAGGGTT CGAGTCCCCT TGGGTACGGA GTCGCCTTTG TTAGGGAGTG 8397 .......... .......... .......... .......... .......... .......... 224 CTTTACCCCA ATGTGGGACT TTCCGACGCG AATCCGAATT TAGTCGGGCT CCAATGTGGG 8457 .......... .......... .......... .......... .......... .......... 224 TAGGGGACAC TGGATGGGAA ACCAAAAAAA AAAGGTATGG TTAAGGGGAT TAAGAAACAA 8517 .......... .......... .......... .......... .......... .......... 224 TGTCTCTCTT TTATCTGAAT CTGGTTGCGT GGAATTTTGT TATTGTTTAT TTATATTTTA 8577 .......... .......... .......... .......... .......... .......... 224 CCTCGATTTG AATGAAATGC TATGCACTAA TGTTCTATTT GTTTGTCAAG TTGCTAGAAT 8637 .......... .......... .......... .......... .......... .......... 224 ATGATTGGCT TAAAGATCAC ATACACTGCA AGAATCTGAA TGCTAACTCT TGTAGGGCTT 8697 ||||| .......... .......... .......... .......... .......... .....GGCTT 229 TGTTATTTCT GATTCCGAAG GAATTGACCG ATTTTTCCAT CCTCATGGAT CTAACTATGA 8757 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTTATTTCT GATTCCGAAG GAATTGACCG ATTTTTCCAT CCTCATGGAT CTAACTATGA 289 CCAAAGTATT TTGGCAGCAA TCAATGCAGG GATTGACATG GTACATAAAA CCTTGTTTTA 8817 |||||||||| |||||||||| |||||||||| |||||||||| CCAAAGTATT TTGGCAGCAA TCAATGCAGG GATTGACATG .......... .......... 329 AGAGTTATTT TGTCTTTGCA TGAGTTATTT TTGTTCTTAC TGTGTTAGAT TTTTTGCAGG 8877 | .......... .......... .......... .......... .......... .........G 330 TGATGGTTCC TTTTCGGTAT CAATTATTTC TCGATCATTT GAAATATCTT GTGGAATCTG 8937 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGATGGTTCC TTTTCGGTAT CAATTATTTC TCGATCATTT GAAATATCTT GTGGAATCTG 390 GGAATATTCC AATGACCAGA ATTGATGATG CTGTTGAAAG GATCCTGAGA GTTAAGTTTG 8997 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGAATATTCC AATGACCAGA ATTGATGATG CTGTTGAAAG GATCCTGAGA GTTAAGTTTG 450 TTTCCGGAGC TTTTGAGAAC CCTC 9021 |||||||||| |||||||||| |||| TTTCCGGAGC TTTTGAGAAC CCTC 474 hqPGS_C06HBa0054K13.1-4+_SGN-E251432+ (7678 7901,8693 8797,8877 9021) ******************************************************************************** EST sequence 26 +strand 563 n (File: SGN-E260291+) 1 CTCAGGGAGT TTGCACAGTA ATGGCATCCT ACTCTAAATG GAATGGAAGC CACCTGCATT 61 CTAGCCACTT TCTTCTTACT GAAGTTTTGA AAGGGAAGCT CGGATTTAAG GGCTTTGTTA 121 TTTCTGATTC CGAAGGAATT GACCGATTTT TCCATCCTCA TGGATCTAAC TATGACCAAA 181 GTATTTTGGC AGCAATCAAT GCAGGGATTG ACATGGTGAT GGTTCCTTTT CGGTATCAAT 241 TATTTCTCGA TCATTTGAAA TATCTTGTGG AATCTGGGAA TATTCCAATG ACCAGAATTG 301 ATGATGCTGT TGAAAGGATC CTGAGAGTTA AGTTTGTTTC CGGAGCTTTT GAGAACCCTC 361 TGAGTGATAG GTCATTGTTG GATACCGTTG GTTGTCATCA ACATCGCGAA TTAGCACGTG 421 AAGCAGTTCG CAAATCACTG GTTCTTCTAA AGAATGGGAA GGATGTAACA AAACCATTTC 481 TTCCGCTAGA TAGGAAGGCA AAGAGAATTC TTGTAGCAGG AAAACATGCT GACGACCTTG 541 GATTCCAATG TGGAGGGTGG ACT Predicted gene structure (within gDNA segment 7192 to 10569): Exon 1 7792 7901 ( 110 n); cDNA 1 110 ( 110 n); score: 1.000 Intron 1 7902 8692 ( 791 n); Pd: 0.998 (s: 1.00), Pa: 0.587 (s: 1.00) Exon 2 8693 8797 ( 105 n); cDNA 111 215 ( 105 n); score: 1.000 Intron 2 8798 8876 ( 79 n); Pd: 0.998 (s: 1.00), Pa: 0.990 (s: 1.00) Exon 3 8877 9059 ( 183 n); cDNA 216 398 ( 183 n); score: 1.000 Intron 3 9060 9794 ( 735 n); Pd: 0.921 (s: 1.00), Pa: 0.825 (s: 1.00) Exon 4 9795 9959 ( 165 n); cDNA 399 563 ( 165 n); score: 1.000 MATCH C06HBa0054K13.1-4+ SGN-E260291+ 1.000 563 1.000 C PGS_C06HBa0054K13.1-4+_SGN-E260291+ (7792 7901,8693 8797,8877 9059,9795 9959) Alignment (genomic DNA sequence = upper lines): CTCAGGGAGT TTGCACAGTA ATGGCATCCT ACTCTAAATG GAATGGAAGC CACCTGCATT 7851 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCAGGGAGT TTGCACAGTA ATGGCATCCT ACTCTAAATG GAATGGAAGC CACCTGCATT 60 CTAGCCACTT TCTTCTTACT GAAGTTTTGA AAGGGAAGCT CGGATTTAAG GTAAGGATTG 7911 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTAGCCACTT TCTTCTTACT GAAGTTTTGA AAGGGAAGCT CGGATTTAAG .......... 110 CCTGTTCTCT TAATGCTCTA TGGTTCATTT GAAGTCCAAA TTTTGGACCA TTAGTTCAAC 7971 .......... .......... .......... .......... .......... .......... 110 ATAAAAATCC TCTAGATTGT TAGATGCTTT TCTCATTTCC TTACCATGCT TAGTAGGGGA 8031 .......... .......... .......... .......... .......... .......... 110 AGTGATTGAA CATATTGCGG TTCCAAAATG CTGAGTTTCA GGGCCCATTT TTGATCGGTA 8091 .......... .......... .......... .......... .......... .......... 110 TTGTTCTTTA AAATAATGTA GAAAACTAAT CAAATTGGTC TGAAGCCTGC ACATGTTTGG 8151 .......... .......... .......... .......... .......... .......... 110 ACTTTGTATT CAGCAAACAC AAAAGATTCT CTCAGCAAAG AGCTAGAGAA GTTCATGTGG 8211 .......... .......... .......... .......... .......... .......... 110 CTTGGAGTTT GTTCTACTTA GTTTAAACTT CACCAAGCCG AAAGTGTAAA AACTTGTTTC 8271 .......... .......... .......... .......... .......... .......... 110 GATGTGCTTG CTTCAACTTA CAAAGGAGTC GGTAAGGCAA AGAGAGTGGT AAGTACTCCT 8331 .......... .......... .......... .......... .......... .......... 110 TTGTCCTTAA CAAGAGGTCT AGGGTTCGAG TCCCCTTGGG TACGGAGTCG CCTTTGTTAG 8391 .......... .......... .......... .......... .......... .......... 110 GGAGTGCTTT ACCCCAATGT GGGACTTTCC GACGCGAATC CGAATTTAGT CGGGCTCCAA 8451 .......... .......... .......... .......... .......... .......... 110 TGTGGGTAGG GGACACTGGA TGGGAAACCA AAAAAAAAAG GTATGGTTAA GGGGATTAAG 8511 .......... .......... .......... .......... .......... .......... 110 AAACAATGTC TCTCTTTTAT CTGAATCTGG TTGCGTGGAA TTTTGTTATT GTTTATTTAT 8571 .......... .......... .......... .......... .......... .......... 110 ATTTTACCTC GATTTGAATG AAATGCTATG CACTAATGTT CTATTTGTTT GTCAAGTTGC 8631 .......... .......... .......... .......... .......... .......... 110 TAGAATATGA TTGGCTTAAA GATCACATAC ACTGCAAGAA TCTGAATGCT AACTCTTGTA 8691 .......... .......... .......... .......... .......... .......... 110 GGGCTTTGTT ATTTCTGATT CCGAAGGAAT TGACCGATTT TTCCATCCTC ATGGATCTAA 8751 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .GGCTTTGTT ATTTCTGATT CCGAAGGAAT TGACCGATTT TTCCATCCTC ATGGATCTAA 169 CTATGACCAA AGTATTTTGG CAGCAATCAA TGCAGGGATT GACATGGTAC ATAAAACCTT 8811 |||||||||| |||||||||| |||||||||| |||||||||| |||||| CTATGACCAA AGTATTTTGG CAGCAATCAA TGCAGGGATT GACATG.... .......... 215 GTTTTAAGAG TTATTTTGTC TTTGCATGAG TTATTTTTGT TCTTACTGTG TTAGATTTTT 8871 .......... .......... .......... .......... .......... .......... 215 TGCAGGTGAT GGTTCCTTTT CGGTATCAAT TATTTCTCGA TCATTTGAAA TATCTTGTGG 8931 ||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .....GTGAT GGTTCCTTTT CGGTATCAAT TATTTCTCGA TCATTTGAAA TATCTTGTGG 270 AATCTGGGAA TATTCCAATG ACCAGAATTG ATGATGCTGT TGAAAGGATC CTGAGAGTTA 8991 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATCTGGGAA TATTCCAATG ACCAGAATTG ATGATGCTGT TGAAAGGATC CTGAGAGTTA 330 AGTTTGTTTC CGGAGCTTTT GAGAACCCTC TGAGTGATAG GTCATTGTTG GATACCGTTG 9051 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTTTGTTTC CGGAGCTTTT GAGAACCCTC TGAGTGATAG GTCATTGTTG GATACCGTTG 390 GTTGTCATGT AAGTCCGTCT TGTCCATTTT GACAGATATT GGCAAAATAT TTATCTTGAA 9111 |||||||| GTTGTCAT.. .......... .......... .......... .......... .......... 398 TTTTGACATT AAATAAGACC TTCATAAGTT TCATTCTATT CTGCCTTTTA TCTCAACAAC 9171 .......... .......... .......... .......... .......... .......... 398 AAAGTGAACA TCTGCTTCAC ATCCATGATG CACGGACTTC TCAAAATGAT TGCAAGCACC 9231 .......... .......... .......... .......... .......... .......... 398 CTTGTTGATG TGACATTGGT GTGGGTGTGG GATCCACGTG GGATTCGGTC AACTTATCTT 9291 .......... .......... .......... .......... .......... .......... 398 GGATGCTTTG ACTACATCTA TGACCAAGAA GTATAGATTG ATTGGCTAAT TCATGAGATC 9351 .......... .......... .......... .......... .......... .......... 398 TCTGAGTAAA ACCCTATGTT TATAAAGAAA TAAATTTTAT TAGTTTTAAT TCAATACCTT 9411 .......... .......... .......... .......... .......... .......... 398 TAATTAATAG AAATAAATAC TTTGTATAAT GTTAAAATAT ACGTTTATTG GCCTTATCCC 9471 .......... .......... .......... .......... .......... .......... 398 ACTTCCCGTA TCCGCTCTCG GATTCATACC CCCAAATCCT AAAAGTTCTG TGACGAAGAG 9531 .......... .......... .......... .......... .......... .......... 398 TCCGACCTCT AGATGCGCAC CCATAGTGGG CACCCAAACC CGAGTCTGAG CAACATAGCT 9591 .......... .......... .......... .......... .......... .......... 398 TTTGCATTGC CCTTACAAAA GTTAAATTAT GTGAGTTGGC AAACTGTTTT ACCTGTTTTT 9651 .......... .......... .......... .......... .......... .......... 398 ACAATGTATA TACTGCTAAT TCTGTTTGTT TTGTAAAATT ATACATTTTT AAAGAATGTA 9711 .......... .......... .......... .......... .......... .......... 398 GGAGAGAGAG AGAGAGGAGT TATGTGCAAT ATATCAGTGC AGAGGCTTCA TAGTAGTTTT 9771 .......... .......... .......... .......... .......... .......... 398 CACCATTCTG ATAATTGTTT CAGCAACATC GCGAATTAGC ACGTGAAGCA GTTCGCAAAT 9831 ||||||| |||||||||| |||||||||| |||||||||| .......... .......... ...CAACATC GCGAATTAGC ACGTGAAGCA GTTCGCAAAT 435 CACTGGTTCT TCTAAAGAAT GGGAAGGATG TAACAAAACC ATTTCTTCCG CTAGATAGGA 9891 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CACTGGTTCT TCTAAAGAAT GGGAAGGATG TAACAAAACC ATTTCTTCCG CTAGATAGGA 495 AGGCAAAGAG AATTCTTGTA GCAGGAAAAC ATGCTGACGA CCTTGGATTC CAATGTGGAG 9951 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGCAAAGAG AATTCTTGTA GCAGGAAAAC ATGCTGACGA CCTTGGATTC CAATGTGGAG 555 GGTGGACT 9959 |||||||| GGTGGACT 563 hqPGS_C06HBa0054K13.1-4+_SGN-E260291+ (7792 7901,8693 8797,8877 9059,9795 9959) ******************************************************************************** EST sequence 22 +strand 468 n (File: SGN-E291669+) 1 GACCGAGGGA GTTTGCACAG TAATGGCATC CTACTCTAAA TGGAATGGAA GCCACCTGCA 61 TTCTAGCCAC TTTCTTCTTA CTGAAGTTTT GAAAGGGAAG CTCGGATTTA AGGGCTTTGT 121 TATTTCTGAT TCCGAAGGAA TTGACCGATT TTTCCATCCT CATGGATCTA ACTATGACCA 181 AAGTATTTTG GCAGCAATCA ATGCAGGGAT TGACATGGTG ATGGTTCCTT TTCGGTATCA 241 ATTATTTCTC GATCATTTGA AATATCTTGT GGAATCTGGG AATATTCCAA TGACCAGAAT 301 TGATGATGCT GTTGAAAGGA TCCTGAGAGT TAAGTTTGTT TCCGGAGCTT TTGAGAACCC 361 TCTGAGTGAT AGGTCATTGT TGGATACCGT TGGTTGTCAT CAACATCGCG AATTAGCACG 421 TGAAGCAGTT CGCAAATCAC TGGTTCTTCT AAAGAATGGG AAGGATGT Predicted gene structure (within gDNA segment 7145 to 10472): Exon 1 7707 7713 ( 7 n); cDNA 1 7 ( 7 n); score: 1.000 Intron 1 7714 7796 ( 83 n); Pd: 0.000 (s: 0), Pa: 0.784 (s: 1.00) Exon 2 7797 7901 ( 105 n); cDNA 8 112 ( 105 n); score: 1.000 Intron 2 7902 8692 ( 791 n); Pd: 0.998 (s: 1.00), Pa: 0.587 (s: 1.00) Exon 3 8693 8797 ( 105 n); cDNA 113 217 ( 105 n); score: 1.000 Intron 3 8798 8876 ( 79 n); Pd: 0.998 (s: 1.00), Pa: 0.990 (s: 1.00) Exon 4 8877 9059 ( 183 n); cDNA 218 400 ( 183 n); score: 1.000 Intron 4 9060 9794 ( 735 n); Pd: 0.921 (s: 1.00), Pa: 0.825 (s: 1.00) Exon 5 9795 9862 ( 68 n); cDNA 401 468 ( 68 n); score: 1.000 MATCH C06HBa0054K13.1-4+ SGN-E291669+ 1.000 468 1.000 C PGS_C06HBa0054K13.1-4+_SGN-E291669+ (7707 7713,7797 7901,8693 8797,8877 9059,9795 9862) Alignment (genomic DNA sequence = upper lines): GACCGAGGTA TAAATGAGGG AAATACCATA TCATCGTATG AAGATCTAGA GAGAATACAT 7766 ||||||| GACCGAG... .......... .......... .......... .......... .......... 7 ATTCCCCCAT ATATTGACTG TATTTCTCAG GGAGTTTGCA CAGTAATGGC ATCCTACTCT 7826 |||||||||| |||||||||| |||||||||| .......... .......... .......... GGAGTTTGCA CAGTAATGGC ATCCTACTCT 37 AAATGGAATG GAAGCCACCT GCATTCTAGC CACTTTCTTC TTACTGAAGT TTTGAAAGGG 7886 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAATGGAATG GAAGCCACCT GCATTCTAGC CACTTTCTTC TTACTGAAGT TTTGAAAGGG 97 AAGCTCGGAT TTAAGGTAAG GATTGCCTGT TCTCTTAATG CTCTATGGTT CATTTGAAGT 7946 |||||||||| ||||| AAGCTCGGAT TTAAG..... .......... .......... .......... .......... 112 CCAAATTTTG GACCATTAGT TCAACATAAA AATCCTCTAG ATTGTTAGAT GCTTTTCTCA 8006 .......... .......... .......... .......... .......... .......... 112 TTTCCTTACC ATGCTTAGTA GGGGAAGTGA TTGAACATAT TGCGGTTCCA AAATGCTGAG 8066 .......... .......... .......... .......... .......... .......... 112 TTTCAGGGCC CATTTTTGAT CGGTATTGTT CTTTAAAATA ATGTAGAAAA CTAATCAAAT 8126 .......... .......... .......... .......... .......... .......... 112 TGGTCTGAAG CCTGCACATG TTTGGACTTT GTATTCAGCA AACACAAAAG ATTCTCTCAG 8186 .......... .......... .......... .......... .......... .......... 112 CAAAGAGCTA GAGAAGTTCA TGTGGCTTGG AGTTTGTTCT ACTTAGTTTA AACTTCACCA 8246 .......... .......... .......... .......... .......... .......... 112 AGCCGAAAGT GTAAAAACTT GTTTCGATGT GCTTGCTTCA ACTTACAAAG GAGTCGGTAA 8306 .......... .......... .......... .......... .......... .......... 112 GGCAAAGAGA GTGGTAAGTA CTCCTTTGTC CTTAACAAGA GGTCTAGGGT TCGAGTCCCC 8366 .......... .......... .......... .......... .......... .......... 112 TTGGGTACGG AGTCGCCTTT GTTAGGGAGT GCTTTACCCC AATGTGGGAC TTTCCGACGC 8426 .......... .......... .......... .......... .......... .......... 112 GAATCCGAAT TTAGTCGGGC TCCAATGTGG GTAGGGGACA CTGGATGGGA AACCAAAAAA 8486 .......... .......... .......... .......... .......... .......... 112 AAAAGGTATG GTTAAGGGGA TTAAGAAACA ATGTCTCTCT TTTATCTGAA TCTGGTTGCG 8546 .......... .......... .......... .......... .......... .......... 112 TGGAATTTTG TTATTGTTTA TTTATATTTT ACCTCGATTT GAATGAAATG CTATGCACTA 8606 .......... .......... .......... .......... .......... .......... 112 ATGTTCTATT TGTTTGTCAA GTTGCTAGAA TATGATTGGC TTAAAGATCA CATACACTGC 8666 .......... .......... .......... .......... .......... .......... 112 AAGAATCTGA ATGCTAACTC TTGTAGGGCT TTGTTATTTC TGATTCCGAA GGAATTGACC 8726 |||| |||||||||| |||||||||| |||||||||| .......... .......... ......GGCT TTGTTATTTC TGATTCCGAA GGAATTGACC 146 GATTTTTCCA TCCTCATGGA TCTAACTATG ACCAAAGTAT TTTGGCAGCA ATCAATGCAG 8786 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATTTTTCCA TCCTCATGGA TCTAACTATG ACCAAAGTAT TTTGGCAGCA ATCAATGCAG 206 GGATTGACAT GGTACATAAA ACCTTGTTTT AAGAGTTATT TTGTCTTTGC ATGAGTTATT 8846 |||||||||| | GGATTGACAT G......... .......... .......... .......... .......... 217 TTTGTTCTTA CTGTGTTAGA TTTTTTGCAG GTGATGGTTC CTTTTCGGTA TCAATTATTT 8906 |||||||||| |||||||||| |||||||||| .......... .......... .......... GTGATGGTTC CTTTTCGGTA TCAATTATTT 247 CTCGATCATT TGAAATATCT TGTGGAATCT GGGAATATTC CAATGACCAG AATTGATGAT 8966 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCGATCATT TGAAATATCT TGTGGAATCT GGGAATATTC CAATGACCAG AATTGATGAT 307 GCTGTTGAAA GGATCCTGAG AGTTAAGTTT GTTTCCGGAG CTTTTGAGAA CCCTCTGAGT 9026 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTGTTGAAA GGATCCTGAG AGTTAAGTTT GTTTCCGGAG CTTTTGAGAA CCCTCTGAGT 367 GATAGGTCAT TGTTGGATAC CGTTGGTTGT CATGTAAGTC CGTCTTGTCC ATTTTGACAG 9086 |||||||||| |||||||||| |||||||||| ||| GATAGGTCAT TGTTGGATAC CGTTGGTTGT CAT....... .......... .......... 400 ATATTGGCAA AATATTTATC TTGAATTTTG ACATTAAATA AGACCTTCAT AAGTTTCATT 9146 .......... .......... .......... .......... .......... .......... 400 CTATTCTGCC TTTTATCTCA ACAACAAAGT GAACATCTGC TTCACATCCA TGATGCACGG 9206 .......... .......... .......... .......... .......... .......... 400 ACTTCTCAAA ATGATTGCAA GCACCCTTGT TGATGTGACA TTGGTGTGGG TGTGGGATCC 9266 .......... .......... .......... .......... .......... .......... 400 ACGTGGGATT CGGTCAACTT ATCTTGGATG CTTTGACTAC ATCTATGACC AAGAAGTATA 9326 .......... .......... .......... .......... .......... .......... 400 GATTGATTGG CTAATTCATG AGATCTCTGA GTAAAACCCT ATGTTTATAA AGAAATAAAT 9386 .......... .......... .......... .......... .......... .......... 400 TTTATTAGTT TTAATTCAAT ACCTTTAATT AATAGAAATA AATACTTTGT ATAATGTTAA 9446 .......... .......... .......... .......... .......... .......... 400 AATATACGTT TATTGGCCTT ATCCCACTTC CCGTATCCGC TCTCGGATTC ATACCCCCAA 9506 .......... .......... .......... .......... .......... .......... 400 ATCCTAAAAG TTCTGTGACG AAGAGTCCGA CCTCTAGATG CGCACCCATA GTGGGCACCC 9566 .......... .......... .......... .......... .......... .......... 400 AAACCCGAGT CTGAGCAACA TAGCTTTTGC ATTGCCCTTA CAAAAGTTAA ATTATGTGAG 9626 .......... .......... .......... .......... .......... .......... 400 TTGGCAAACT GTTTTACCTG TTTTTACAAT GTATATACTG CTAATTCTGT TTGTTTTGTA 9686 .......... .......... .......... .......... .......... .......... 400 AAATTATACA TTTTTAAAGA ATGTAGGAGA GAGAGAGAGA GGAGTTATGT GCAATATATC 9746 .......... .......... .......... .......... .......... .......... 400 AGTGCAGAGG CTTCATAGTA GTTTTCACCA TTCTGATAAT TGTTTCAGCA ACATCGCGAA 9806 || |||||||||| .......... .......... .......... .......... ........CA ACATCGCGAA 412 TTAGCACGTG AAGCAGTTCG CAAATCACTG GTTCTTCTAA AGAATGGGAA GGATGT 9862 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||| TTAGCACGTG AAGCAGTTCG CAAATCACTG GTTCTTCTAA AGAATGGGAA GGATGT 468 hqPGS_C06HBa0054K13.1-4+_SGN-E291669+ (7797 7901,8693 8797,8877 9059,9795 9862) ******************************************************************************** EST sequence 23 +strand 597 n (File: SGN-E210532+) 1 TGGAATGGAA GCCACCTGCA TTCTAGCCAC TTTCTTCTTA CTGAAGTTTT GAAAGGGAAG 61 CTCGGATTTA AGGGCTTTGT TATTTCTGAT TCCGAAGGAA TTGACCGATT TTTCCATCCT 121 CATGGATCTA ACTATGACCA AAGTATTTTG GCAGCAATCA ATGCAGGGAT TGACATGGTG 181 ATGGTTCCTT TTCGGTATCA ATTATTTCTC GATCATTTGA AATATCTTGT GGAATCTGGG 241 AATATTCCAA TGACCAGAAT TGATGATGCT GTTGAAAGGA TCCTGAGAGT TAAGTTTGTT 301 TCCGGAGCTT TTGAGAACCC TCTGAGTGAT AGGTCATTGT TGGATACCGT TGGTTGTCAT 361 CAACATCGCG AATTAGCACG TGAAGCAGTT CGCAAATCAC TGGTTCTTCT AAAGAATGGG 421 AAGGATGTAA CAAAACCATT TCTTCCGCTA GATAGGAAGG CAAAGAGAAT TCTTGTAGCA 481 GGAAAACATG CTGACGACCT TGGATTCCAA TGTGGAGGGT GGACTAAAAC ATGGGAAGGA 541 ATGGGCGGAA GAATCACGAT TGGTACAACT ATTCTGGAAG CTATTAAAGA TGCTGTT Predicted gene structure (within gDNA segment 7230 to 11469): Exon 1 7830 7901 ( 72 n); cDNA 1 72 ( 72 n); score: 1.000 Intron 1 7902 8692 ( 791 n); Pd: 0.998 (s: 1.00), Pa: 0.587 (s: 1.00) Exon 2 8693 8797 ( 105 n); cDNA 73 177 ( 105 n); score: 1.000 Intron 2 8798 8876 ( 79 n); Pd: 0.998 (s: 1.00), Pa: 0.990 (s: 1.00) Exon 3 8877 9059 ( 183 n); cDNA 178 360 ( 183 n); score: 1.000 Intron 3 9060 9794 ( 735 n); Pd: 0.921 (s: 1.00), Pa: 0.825 (s: 1.00) Exon 4 9795 9996 ( 202 n); cDNA 361 562 ( 202 n); score: 1.000 Intron 4 9997 10824 ( 828 n); Pd: 1.000 (s: 1.00), Pa: 0.999 (s: 0) Exon 5 10825 10859 ( 35 n); cDNA 563 597 ( 35 n); score: 1.000 MATCH C06HBa0054K13.1-4+ SGN-E210532+ 1.000 597 1.000 C PGS_C06HBa0054K13.1-4+_SGN-E210532+ (7830 7901,8693 8797,8877 9059,9795 9996,10825 10859) Alignment (genomic DNA sequence = upper lines): TGGAATGGAA GCCACCTGCA TTCTAGCCAC TTTCTTCTTA CTGAAGTTTT GAAAGGGAAG 7889 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGAATGGAA GCCACCTGCA TTCTAGCCAC TTTCTTCTTA CTGAAGTTTT GAAAGGGAAG 60 CTCGGATTTA AGGTAAGGAT TGCCTGTTCT CTTAATGCTC TATGGTTCAT TTGAAGTCCA 7949 |||||||||| || CTCGGATTTA AG........ .......... .......... .......... .......... 72 AATTTTGGAC CATTAGTTCA ACATAAAAAT CCTCTAGATT GTTAGATGCT TTTCTCATTT 8009 .......... .......... .......... .......... .......... .......... 72 CCTTACCATG CTTAGTAGGG GAAGTGATTG AACATATTGC GGTTCCAAAA TGCTGAGTTT 8069 .......... .......... .......... .......... .......... .......... 72 CAGGGCCCAT TTTTGATCGG TATTGTTCTT TAAAATAATG TAGAAAACTA ATCAAATTGG 8129 .......... .......... .......... .......... .......... .......... 72 TCTGAAGCCT GCACATGTTT GGACTTTGTA TTCAGCAAAC ACAAAAGATT CTCTCAGCAA 8189 .......... .......... .......... .......... .......... .......... 72 AGAGCTAGAG AAGTTCATGT GGCTTGGAGT TTGTTCTACT TAGTTTAAAC TTCACCAAGC 8249 .......... .......... .......... .......... .......... .......... 72 CGAAAGTGTA AAAACTTGTT TCGATGTGCT TGCTTCAACT TACAAAGGAG TCGGTAAGGC 8309 .......... .......... .......... .......... .......... .......... 72 AAAGAGAGTG GTAAGTACTC CTTTGTCCTT AACAAGAGGT CTAGGGTTCG AGTCCCCTTG 8369 .......... .......... .......... .......... .......... .......... 72 GGTACGGAGT CGCCTTTGTT AGGGAGTGCT TTACCCCAAT GTGGGACTTT CCGACGCGAA 8429 .......... .......... .......... .......... .......... .......... 72 TCCGAATTTA GTCGGGCTCC AATGTGGGTA GGGGACACTG GATGGGAAAC CAAAAAAAAA 8489 .......... .......... .......... .......... .......... .......... 72 AGGTATGGTT AAGGGGATTA AGAAACAATG TCTCTCTTTT ATCTGAATCT GGTTGCGTGG 8549 .......... .......... .......... .......... .......... .......... 72 AATTTTGTTA TTGTTTATTT ATATTTTACC TCGATTTGAA TGAAATGCTA TGCACTAATG 8609 .......... .......... .......... .......... .......... .......... 72 TTCTATTTGT TTGTCAAGTT GCTAGAATAT GATTGGCTTA AAGATCACAT ACACTGCAAG 8669 .......... .......... .......... .......... .......... .......... 72 AATCTGAATG CTAACTCTTG TAGGGCTTTG TTATTTCTGA TTCCGAAGGA ATTGACCGAT 8729 ||||||| |||||||||| |||||||||| |||||||||| .......... .......... ...GGCTTTG TTATTTCTGA TTCCGAAGGA ATTGACCGAT 109 TTTTCCATCC TCATGGATCT AACTATGACC AAAGTATTTT GGCAGCAATC AATGCAGGGA 8789 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTTCCATCC TCATGGATCT AACTATGACC AAAGTATTTT GGCAGCAATC AATGCAGGGA 169 TTGACATGGT ACATAAAACC TTGTTTTAAG AGTTATTTTG TCTTTGCATG AGTTATTTTT 8849 |||||||| TTGACATG.. .......... .......... .......... .......... .......... 177 GTTCTTACTG TGTTAGATTT TTTGCAGGTG ATGGTTCCTT TTCGGTATCA ATTATTTCTC 8909 ||| |||||||||| |||||||||| |||||||||| .......... .......... .......GTG ATGGTTCCTT TTCGGTATCA ATTATTTCTC 210 GATCATTTGA AATATCTTGT GGAATCTGGG AATATTCCAA TGACCAGAAT TGATGATGCT 8969 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATCATTTGA AATATCTTGT GGAATCTGGG AATATTCCAA TGACCAGAAT TGATGATGCT 270 GTTGAAAGGA TCCTGAGAGT TAAGTTTGTT TCCGGAGCTT TTGAGAACCC TCTGAGTGAT 9029 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTGAAAGGA TCCTGAGAGT TAAGTTTGTT TCCGGAGCTT TTGAGAACCC TCTGAGTGAT 330 AGGTCATTGT TGGATACCGT TGGTTGTCAT GTAAGTCCGT CTTGTCCATT TTGACAGATA 9089 |||||||||| |||||||||| |||||||||| AGGTCATTGT TGGATACCGT TGGTTGTCAT .......... .......... .......... 360 TTGGCAAAAT ATTTATCTTG AATTTTGACA TTAAATAAGA CCTTCATAAG TTTCATTCTA 9149 .......... .......... .......... .......... .......... .......... 360 TTCTGCCTTT TATCTCAACA ACAAAGTGAA CATCTGCTTC ACATCCATGA TGCACGGACT 9209 .......... .......... .......... .......... .......... .......... 360 TCTCAAAATG ATTGCAAGCA CCCTTGTTGA TGTGACATTG GTGTGGGTGT GGGATCCACG 9269 .......... .......... .......... .......... .......... .......... 360 TGGGATTCGG TCAACTTATC TTGGATGCTT TGACTACATC TATGACCAAG AAGTATAGAT 9329 .......... .......... .......... .......... .......... .......... 360 TGATTGGCTA ATTCATGAGA TCTCTGAGTA AAACCCTATG TTTATAAAGA AATAAATTTT 9389 .......... .......... .......... .......... .......... .......... 360 ATTAGTTTTA ATTCAATACC TTTAATTAAT AGAAATAAAT ACTTTGTATA ATGTTAAAAT 9449 .......... .......... .......... .......... .......... .......... 360 ATACGTTTAT TGGCCTTATC CCACTTCCCG TATCCGCTCT CGGATTCATA CCCCCAAATC 9509 .......... .......... .......... .......... .......... .......... 360 CTAAAAGTTC TGTGACGAAG AGTCCGACCT CTAGATGCGC ACCCATAGTG GGCACCCAAA 9569 .......... .......... .......... .......... .......... .......... 360 CCCGAGTCTG AGCAACATAG CTTTTGCATT GCCCTTACAA AAGTTAAATT ATGTGAGTTG 9629 .......... .......... .......... .......... .......... .......... 360 GCAAACTGTT TTACCTGTTT TTACAATGTA TATACTGCTA ATTCTGTTTG TTTTGTAAAA 9689 .......... .......... .......... .......... .......... .......... 360 TTATACATTT TTAAAGAATG TAGGAGAGAG AGAGAGAGGA GTTATGTGCA ATATATCAGT 9749 .......... .......... .......... .......... .......... .......... 360 GCAGAGGCTT CATAGTAGTT TTCACCATTC TGATAATTGT TTCAGCAACA TCGCGAATTA 9809 ||||| |||||||||| .......... .......... .......... .......... .....CAACA TCGCGAATTA 375 GCACGTGAAG CAGTTCGCAA ATCACTGGTT CTTCTAAAGA ATGGGAAGGA TGTAACAAAA 9869 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCACGTGAAG CAGTTCGCAA ATCACTGGTT CTTCTAAAGA ATGGGAAGGA TGTAACAAAA 435 CCATTTCTTC CGCTAGATAG GAAGGCAAAG AGAATTCTTG TAGCAGGAAA ACATGCTGAC 9929 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCATTTCTTC CGCTAGATAG GAAGGCAAAG AGAATTCTTG TAGCAGGAAA ACATGCTGAC 495 GACCTTGGAT TCCAATGTGG AGGGTGGACT AAAACATGGG AAGGAATGGG CGGAAGAATC 9989 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GACCTTGGAT TCCAATGTGG AGGGTGGACT AAAACATGGG AAGGAATGGG CGGAAGAATC 555 ACGATTGGTA AGTTATGCTT CCTCTGTTCT AATTATATGA CACTCATTCA TATTTACTAC 10049 ||||||| ACGATTG... .......... .......... .......... .......... .......... 562 ATGAAAAAAA CAATTTCAAC TTTCTATATT GTGAAAACTC TGACTTTAGG TGTACCATTT 10109 .......... .......... .......... .......... .......... .......... 562 TATTCTTAGT GACATACTCC TATAGATATA GAAATATTTG ACATGTTTTA GTTCACGAGT 10169 .......... .......... .......... .......... .......... .......... 562 TTTATGGGTA CTTTTGGTAT GTGTAGAAAG TCTTTGGTTT TTCTTAAATT TTGTGCCCAG 10229 .......... .......... .......... .......... .......... .......... 562 CCAAGCACCG CCATATAAAA TGGAGAGAGT AATGGAAAGA TGGCATCAGT CGTTACTTAT 10289 .......... .......... .......... .......... .......... .......... 562 ACTTTCATAC AACTAGAGCA TTATAGTTTA GAGTAGCATC TTTCTTTCCT TCTTTCTTAC 10349 .......... .......... .......... .......... .......... .......... 562 ATGGACTCAA ATTTACCACA AGTTTAGGAA CAATATCTCA AGAGTTCCGC TCCCATTTCT 10409 .......... .......... .......... .......... .......... .......... 562 TGTGGGTGAT TTGTAAAAAC CCTGTATGTT TGATTGTTTT CTCGCAAGAA ATCTTAAGCT 10469 .......... .......... .......... .......... .......... .......... 562 ATAATGTCAT AAAATGCCTG ATATCGCCAG CTGATAGCAT AATTTTGTAT GACATATGTA 10529 .......... .......... .......... .......... .......... .......... 562 AGCTAGTGCA TACTCTTGTT AGCCTTGCAC AAAGATCTTG ATGTACTAGG AACCTCAATA 10589 .......... .......... .......... .......... .......... .......... 562 GACCCAATGT AGTCCGGTCC TTCTGCGTAC CATGCTCAAA ACAGAAACTT AGTGCACTTG 10649 .......... .......... .......... .......... .......... .......... 562 GCTGCCCTTA GGAACCTCAA TAAGGATGAG GATTGGGATT AGACGTGCGT TGAGTCCTTT 10709 .......... .......... .......... .......... .......... .......... 562 TGATAATGAG CTCATTTCTC TCAATAGGCC GATGATAATA TAATGCATCT CTGAACTTAG 10769 .......... .......... .......... .......... .......... .......... 562 TTTACCACTA TTAATCACGG ATCATTTACT ACTTAAAACG GATAATTTGT TGTAGGTACA 10829 ||||| .......... .......... .......... .......... .......... .....GTACA 567 ACTATTCTGG AAGCTATTAA AGATGCTGTT 10859 |||||||||| |||||||||| |||||||||| ACTATTCTGG AAGCTATTAA AGATGCTGTT 597 hqPGS_C06HBa0054K13.1-4+_SGN-E210532+ (7830 7901,8693 8797,8877 9059,9795 9996,10825 10859) ******************************************************************************** EST sequence 20 +strand 558 n (File: SGN-E256880+) 1 CGGATTTAAG GGCTTTGTTA TTTCTGATTC CGAAGGAATT GACCGATTTT TCCATCCTCA 61 TGGATCTAAC TATGACCAAA GTATTTTGGC AGCAATCAAT GCAGGGATTG ACATGGTGAT 121 GGTTCCTTTT CGGTATCAAT TATTTCTCGA TCATTTGAAA TATCTTGTGG AATCTGGGAA 181 TATTCCAATG ACCAGAATTG ATGATGCTGT TGAAAGGATC CTGAGAGTTA AGTTTGTTTC 241 CGGAGCTTTT GAGAACCCTC TGAGTGATAG GTCATTGTTG GATACCGTTG GTTGTCATCA 301 CGTGAAGCAG TTCGCAAATC ACTGGTTCTT CTAAAGAATG GGAAGGATGT AACAAAACCA 361 TTTCTTCCGC TAGATAGGAA GGCAAAGAGA ATTCTTGTAG CAGGAAAACA TGCTGACGAC 421 CTTGGATTCC AATGTGGAGG GTGGACTAAA ACATGGGAAG GAATGGGCGG AAGAATCACG 481 ATTGGTACAA CTATTCTGGA AGCTATTAAA GATGCTGTTG GAGGGGAAAC AGAACTGGTA 541 TATGAAGAAA ATCCTTCA Predicted gene structure (within gDNA segment 8011 to 11508): Exon 1 8693 8797 ( 105 n); cDNA 11 115 ( 105 n); score: 1.000 Intron 1 8798 8876 ( 79 n); Pd: 0.998 (s: 1.00), Pa: 0.990 (s: 1.00) Exon 2 8877 9059 ( 183 n); cDNA 116 298 ( 183 n); score: 1.000 Intron 2 9060 9810 ( 751 n); Pd: 0.921 (s: 1.00), Pa: 0.000 (s: 1.00) Exon 3 9811 9996 ( 186 n); cDNA 299 484 ( 186 n); score: 1.000 Intron 3 9997 10824 ( 828 n); Pd: 1.000 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 4 10825 10898 ( 74 n); cDNA 485 558 ( 74 n); score: 1.000 MATCH C06HBa0054K13.1-4+ SGN-E256880+ 1.000 548 0.982 C PGS_C06HBa0054K13.1-4+_SGN-E256880+ (8693 8797,8877 9059,9811 9996,10825 10898) Alignment (genomic DNA sequence = upper lines): GGCTTTGTTA TTTCTGATTC CGAAGGAATT GACCGATTTT TCCATCCTCA TGGATCTAAC 8752 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGCTTTGTTA TTTCTGATTC CGAAGGAATT GACCGATTTT TCCATCCTCA TGGATCTAAC 70 TATGACCAAA GTATTTTGGC AGCAATCAAT GCAGGGATTG ACATGGTACA TAAAACCTTG 8812 |||||||||| |||||||||| |||||||||| |||||||||| ||||| TATGACCAAA GTATTTTGGC AGCAATCAAT GCAGGGATTG ACATG..... .......... 115 TTTTAAGAGT TATTTTGTCT TTGCATGAGT TATTTTTGTT CTTACTGTGT TAGATTTTTT 8872 .......... .......... .......... .......... .......... .......... 115 GCAGGTGATG GTTCCTTTTC GGTATCAATT ATTTCTCGAT CATTTGAAAT ATCTTGTGGA 8932 |||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ....GTGATG GTTCCTTTTC GGTATCAATT ATTTCTCGAT CATTTGAAAT ATCTTGTGGA 171 ATCTGGGAAT ATTCCAATGA CCAGAATTGA TGATGCTGTT GAAAGGATCC TGAGAGTTAA 8992 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCTGGGAAT ATTCCAATGA CCAGAATTGA TGATGCTGTT GAAAGGATCC TGAGAGTTAA 231 GTTTGTTTCC GGAGCTTTTG AGAACCCTCT GAGTGATAGG TCATTGTTGG ATACCGTTGG 9052 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTTGTTTCC GGAGCTTTTG AGAACCCTCT GAGTGATAGG TCATTGTTGG ATACCGTTGG 291 TTGTCATGTA AGTCCGTCTT GTCCATTTTG ACAGATATTG GCAAAATATT TATCTTGAAT 9112 ||||||| TTGTCAT... .......... .......... .......... .......... .......... 298 TTTGACATTA AATAAGACCT TCATAAGTTT CATTCTATTC TGCCTTTTAT CTCAACAACA 9172 .......... .......... .......... .......... .......... .......... 298 AAGTGAACAT CTGCTTCACA TCCATGATGC ACGGACTTCT CAAAATGATT GCAAGCACCC 9232 .......... .......... .......... .......... .......... .......... 298 TTGTTGATGT GACATTGGTG TGGGTGTGGG ATCCACGTGG GATTCGGTCA ACTTATCTTG 9292 .......... .......... .......... .......... .......... .......... 298 GATGCTTTGA CTACATCTAT GACCAAGAAG TATAGATTGA TTGGCTAATT CATGAGATCT 9352 .......... .......... .......... .......... .......... .......... 298 CTGAGTAAAA CCCTATGTTT ATAAAGAAAT AAATTTTATT AGTTTTAATT CAATACCTTT 9412 .......... .......... .......... .......... .......... .......... 298 AATTAATAGA AATAAATACT TTGTATAATG TTAAAATATA CGTTTATTGG CCTTATCCCA 9472 .......... .......... .......... .......... .......... .......... 298 CTTCCCGTAT CCGCTCTCGG ATTCATACCC CCAAATCCTA AAAGTTCTGT GACGAAGAGT 9532 .......... .......... .......... .......... .......... .......... 298 CCGACCTCTA GATGCGCACC CATAGTGGGC ACCCAAACCC GAGTCTGAGC AACATAGCTT 9592 .......... .......... .......... .......... .......... .......... 298 TTGCATTGCC CTTACAAAAG TTAAATTATG TGAGTTGGCA AACTGTTTTA CCTGTTTTTA 9652 .......... .......... .......... .......... .......... .......... 298 CAATGTATAT ACTGCTAATT CTGTTTGTTT TGTAAAATTA TACATTTTTA AAGAATGTAG 9712 .......... .......... .......... .......... .......... .......... 298 GAGAGAGAGA GAGAGGAGTT ATGTGCAATA TATCAGTGCA GAGGCTTCAT AGTAGTTTTC 9772 .......... .......... .......... .......... .......... .......... 298 ACCATTCTGA TAATTGTTTC AGCAACATCG CGAATTAGCA CGTGAAGCAG TTCGCAAATC 9832 || |||||||||| |||||||||| .......... .......... .......... ........CA CGTGAAGCAG TTCGCAAATC 320 ACTGGTTCTT CTAAAGAATG GGAAGGATGT AACAAAACCA TTTCTTCCGC TAGATAGGAA 9892 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACTGGTTCTT CTAAAGAATG GGAAGGATGT AACAAAACCA TTTCTTCCGC TAGATAGGAA 380 GGCAAAGAGA ATTCTTGTAG CAGGAAAACA TGCTGACGAC CTTGGATTCC AATGTGGAGG 9952 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGCAAAGAGA ATTCTTGTAG CAGGAAAACA TGCTGACGAC CTTGGATTCC AATGTGGAGG 440 GTGGACTAAA ACATGGGAAG GAATGGGCGG AAGAATCACG ATTGGTAAGT TATGCTTCCT 10012 |||||||||| |||||||||| |||||||||| |||||||||| |||| GTGGACTAAA ACATGGGAAG GAATGGGCGG AAGAATCACG ATTG...... .......... 484 CTGTTCTAAT TATATGACAC TCATTCATAT TTACTACATG AAAAAAACAA TTTCAACTTT 10072 .......... .......... .......... .......... .......... .......... 484 CTATATTGTG AAAACTCTGA CTTTAGGTGT ACCATTTTAT TCTTAGTGAC ATACTCCTAT 10132 .......... .......... .......... .......... .......... .......... 484 AGATATAGAA ATATTTGACA TGTTTTAGTT CACGAGTTTT ATGGGTACTT TTGGTATGTG 10192 .......... .......... .......... .......... .......... .......... 484 TAGAAAGTCT TTGGTTTTTC TTAAATTTTG TGCCCAGCCA AGCACCGCCA TATAAAATGG 10252 .......... .......... .......... .......... .......... .......... 484 AGAGAGTAAT GGAAAGATGG CATCAGTCGT TACTTATACT TTCATACAAC TAGAGCATTA 10312 .......... .......... .......... .......... .......... .......... 484 TAGTTTAGAG TAGCATCTTT CTTTCCTTCT TTCTTACATG GACTCAAATT TACCACAAGT 10372 .......... .......... .......... .......... .......... .......... 484 TTAGGAACAA TATCTCAAGA GTTCCGCTCC CATTTCTTGT GGGTGATTTG TAAAAACCCT 10432 .......... .......... .......... .......... .......... .......... 484 GTATGTTTGA TTGTTTTCTC GCAAGAAATC TTAAGCTATA ATGTCATAAA ATGCCTGATA 10492 .......... .......... .......... .......... .......... .......... 484 TCGCCAGCTG ATAGCATAAT TTTGTATGAC ATATGTAAGC TAGTGCATAC TCTTGTTAGC 10552 .......... .......... .......... .......... .......... .......... 484 CTTGCACAAA GATCTTGATG TACTAGGAAC CTCAATAGAC CCAATGTAGT CCGGTCCTTC 10612 .......... .......... .......... .......... .......... .......... 484 TGCGTACCAT GCTCAAAACA GAAACTTAGT GCACTTGGCT GCCCTTAGGA ACCTCAATAA 10672 .......... .......... .......... .......... .......... .......... 484 GGATGAGGAT TGGGATTAGA CGTGCGTTGA GTCCTTTTGA TAATGAGCTC ATTTCTCTCA 10732 .......... .......... .......... .......... .......... .......... 484 ATAGGCCGAT GATAATATAA TGCATCTCTG AACTTAGTTT ACCACTATTA ATCACGGATC 10792 .......... .......... .......... .......... .......... .......... 484 ATTTACTACT TAAAACGGAT AATTTGTTGT AGGTACAACT ATTCTGGAAG CTATTAAAGA 10852 |||||||| |||||||||| |||||||||| .......... .......... .......... ..GTACAACT ATTCTGGAAG CTATTAAAGA 512 TGCTGTTGGA GGGGAAACAG AACTGGTATA TGAAGAAAAT CCTTCA 10898 |||||||||| |||||||||| |||||||||| |||||||||| |||||| TGCTGTTGGA GGGGAAACAG AACTGGTATA TGAAGAAAAT CCTTCA 558 hqPGS_C06HBa0054K13.1-4+_SGN-E256880+ (8693 8797,8877 9059,9811 9996,10825 10898) ******************************************************************************** EST sequence 24 +strand 550 n (File: SGN-E248840+) 1 TCAATGCAGG GATTGACATG GTGATGGTTC CTTTTCGGTA TCAATTATTT CTCGATCATT 61 TGAAATATCT TGTGGAATCT GGGAATATTC CAATGACCAG AATTGATGAT GCTGTTGAAA 121 GGATCCTGAG AGTTAAGTTT GTTTCCGGAG CTTTTGAGAA CCCTCTGAGT GATAGGTCAT 181 TGTTGGATAC CGTTGGTTGT CATCAACATC GCGAATTAGC ACGTGAAGCA GTTCGCAAAT 241 CACTGGTTCT TCTAAAGAAT GGGAAGGATG TAACAAAACC ATTTCTTCCG CTAGATAGGA 301 AGGCAAAGAG AATTCTTGTA GCAGGAAAAC ATGCTGACGA CCTTGGATTC CAATGTGGAG 361 GGTGGACTAA AACATGGGAA GGAATGGGCG GAAGAATCAC GATTGGTACA ACTATTCTGG 421 AAGCTATTAA AGATGCTGTT GGAGGGGAAA CAGAACTGGT ATATGAAGAA AATCCTTCAC 481 CAGACACCTT TGCGAGTCAA GACTTCTCTT ATTGCATTGT AGTTGTTGGT GAACCTCCCT 541 ATTGTGAAAG Predicted gene structure (within gDNA segment 8086 to 11579): Exon 1 8778 8797 ( 20 n); cDNA 1 20 ( 20 n); score: 1.000 Intron 1 8798 8876 ( 79 n); Pd: 0.998 (s: 0), Pa: 0.990 (s: 1.00) Exon 2 8877 9059 ( 183 n); cDNA 21 203 ( 183 n); score: 1.000 Intron 2 9060 9794 ( 735 n); Pd: 0.921 (s: 1.00), Pa: 0.825 (s: 1.00) Exon 3 9795 9996 ( 202 n); cDNA 204 405 ( 202 n); score: 1.000 Intron 3 9997 10824 ( 828 n); Pd: 1.000 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 4 10825 10969 ( 145 n); cDNA 406 550 ( 145 n); score: 1.000 MATCH C06HBa0054K13.1-4+ SGN-E248840+ 1.000 550 1.000 C PGS_C06HBa0054K13.1-4+_SGN-E248840+ (8778 8797,8877 9059,9795 9996,10825 10969) Alignment (genomic DNA sequence = upper lines): TCAATGCAGG GATTGACATG GTACATAAAA CCTTGTTTTA AGAGTTATTT TGTCTTTGCA 8837 |||||||||| |||||||||| TCAATGCAGG GATTGACATG .......... .......... .......... .......... 20 TGAGTTATTT TTGTTCTTAC TGTGTTAGAT TTTTTGCAGG TGATGGTTCC TTTTCGGTAT 8897 | |||||||||| |||||||||| .......... .......... .......... .........G TGATGGTTCC TTTTCGGTAT 41 CAATTATTTC TCGATCATTT GAAATATCTT GTGGAATCTG GGAATATTCC AATGACCAGA 8957 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAATTATTTC TCGATCATTT GAAATATCTT GTGGAATCTG GGAATATTCC AATGACCAGA 101 ATTGATGATG CTGTTGAAAG GATCCTGAGA GTTAAGTTTG TTTCCGGAGC TTTTGAGAAC 9017 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTGATGATG CTGTTGAAAG GATCCTGAGA GTTAAGTTTG TTTCCGGAGC TTTTGAGAAC 161 CCTCTGAGTG ATAGGTCATT GTTGGATACC GTTGGTTGTC ATGTAAGTCC GTCTTGTCCA 9077 |||||||||| |||||||||| |||||||||| |||||||||| || CCTCTGAGTG ATAGGTCATT GTTGGATACC GTTGGTTGTC AT........ .......... 203 TTTTGACAGA TATTGGCAAA ATATTTATCT TGAATTTTGA CATTAAATAA GACCTTCATA 9137 .......... .......... .......... .......... .......... .......... 203 AGTTTCATTC TATTCTGCCT TTTATCTCAA CAACAAAGTG AACATCTGCT TCACATCCAT 9197 .......... .......... .......... .......... .......... .......... 203 GATGCACGGA CTTCTCAAAA TGATTGCAAG CACCCTTGTT GATGTGACAT TGGTGTGGGT 9257 .......... .......... .......... .......... .......... .......... 203 GTGGGATCCA CGTGGGATTC GGTCAACTTA TCTTGGATGC TTTGACTACA TCTATGACCA 9317 .......... .......... .......... .......... .......... .......... 203 AGAAGTATAG ATTGATTGGC TAATTCATGA GATCTCTGAG TAAAACCCTA TGTTTATAAA 9377 .......... .......... .......... .......... .......... .......... 203 GAAATAAATT TTATTAGTTT TAATTCAATA CCTTTAATTA ATAGAAATAA ATACTTTGTA 9437 .......... .......... .......... .......... .......... .......... 203 TAATGTTAAA ATATACGTTT ATTGGCCTTA TCCCACTTCC CGTATCCGCT CTCGGATTCA 9497 .......... .......... .......... .......... .......... .......... 203 TACCCCCAAA TCCTAAAAGT TCTGTGACGA AGAGTCCGAC CTCTAGATGC GCACCCATAG 9557 .......... .......... .......... .......... .......... .......... 203 TGGGCACCCA AACCCGAGTC TGAGCAACAT AGCTTTTGCA TTGCCCTTAC AAAAGTTAAA 9617 .......... .......... .......... .......... .......... .......... 203 TTATGTGAGT TGGCAAACTG TTTTACCTGT TTTTACAATG TATATACTGC TAATTCTGTT 9677 .......... .......... .......... .......... .......... .......... 203 TGTTTTGTAA AATTATACAT TTTTAAAGAA TGTAGGAGAG AGAGAGAGAG GAGTTATGTG 9737 .......... .......... .......... .......... .......... .......... 203 CAATATATCA GTGCAGAGGC TTCATAGTAG TTTTCACCAT TCTGATAATT GTTTCAGCAA 9797 ||| .......... .......... .......... .......... .......... .......CAA 206 CATCGCGAAT TAGCACGTGA AGCAGTTCGC AAATCACTGG TTCTTCTAAA GAATGGGAAG 9857 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATCGCGAAT TAGCACGTGA AGCAGTTCGC AAATCACTGG TTCTTCTAAA GAATGGGAAG 266 GATGTAACAA AACCATTTCT TCCGCTAGAT AGGAAGGCAA AGAGAATTCT TGTAGCAGGA 9917 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATGTAACAA AACCATTTCT TCCGCTAGAT AGGAAGGCAA AGAGAATTCT TGTAGCAGGA 326 AAACATGCTG ACGACCTTGG ATTCCAATGT GGAGGGTGGA CTAAAACATG GGAAGGAATG 9977 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAACATGCTG ACGACCTTGG ATTCCAATGT GGAGGGTGGA CTAAAACATG GGAAGGAATG 386 GGCGGAAGAA TCACGATTGG TAAGTTATGC TTCCTCTGTT CTAATTATAT GACACTCATT 10037 |||||||||| ||||||||| GGCGGAAGAA TCACGATTG. .......... .......... .......... .......... 405 CATATTTACT ACATGAAAAA AACAATTTCA ACTTTCTATA TTGTGAAAAC TCTGACTTTA 10097 .......... .......... .......... .......... .......... .......... 405 GGTGTACCAT TTTATTCTTA GTGACATACT CCTATAGATA TAGAAATATT TGACATGTTT 10157 .......... .......... .......... .......... .......... .......... 405 TAGTTCACGA GTTTTATGGG TACTTTTGGT ATGTGTAGAA AGTCTTTGGT TTTTCTTAAA 10217 .......... .......... .......... .......... .......... .......... 405 TTTTGTGCCC AGCCAAGCAC CGCCATATAA AATGGAGAGA GTAATGGAAA GATGGCATCA 10277 .......... .......... .......... .......... .......... .......... 405 GTCGTTACTT ATACTTTCAT ACAACTAGAG CATTATAGTT TAGAGTAGCA TCTTTCTTTC 10337 .......... .......... .......... .......... .......... .......... 405 CTTCTTTCTT ACATGGACTC AAATTTACCA CAAGTTTAGG AACAATATCT CAAGAGTTCC 10397 .......... .......... .......... .......... .......... .......... 405 GCTCCCATTT CTTGTGGGTG ATTTGTAAAA ACCCTGTATG TTTGATTGTT TTCTCGCAAG 10457 .......... .......... .......... .......... .......... .......... 405 AAATCTTAAG CTATAATGTC ATAAAATGCC TGATATCGCC AGCTGATAGC ATAATTTTGT 10517 .......... .......... .......... .......... .......... .......... 405 ATGACATATG TAAGCTAGTG CATACTCTTG TTAGCCTTGC ACAAAGATCT TGATGTACTA 10577 .......... .......... .......... .......... .......... .......... 405 GGAACCTCAA TAGACCCAAT GTAGTCCGGT CCTTCTGCGT ACCATGCTCA AAACAGAAAC 10637 .......... .......... .......... .......... .......... .......... 405 TTAGTGCACT TGGCTGCCCT TAGGAACCTC AATAAGGATG AGGATTGGGA TTAGACGTGC 10697 .......... .......... .......... .......... .......... .......... 405 GTTGAGTCCT TTTGATAATG AGCTCATTTC TCTCAATAGG CCGATGATAA TATAATGCAT 10757 .......... .......... .......... .......... .......... .......... 405 CTCTGAACTT AGTTTACCAC TATTAATCAC GGATCATTTA CTACTTAAAA CGGATAATTT 10817 .......... .......... .......... .......... .......... .......... 405 GTTGTAGGTA CAACTATTCT GGAAGCTATT AAAGATGCTG TTGGAGGGGA AACAGAACTG 10877 ||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......GTA CAACTATTCT GGAAGCTATT AAAGATGCTG TTGGAGGGGA AACAGAACTG 458 GTATATGAAG AAAATCCTTC ACCAGACACC TTTGCGAGTC AAGACTTCTC TTATTGCATT 10937 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTATATGAAG AAAATCCTTC ACCAGACACC TTTGCGAGTC AAGACTTCTC TTATTGCATT 518 GTAGTTGTTG GTGAACCTCC CTATTGTGAA AG 10969 |||||||||| |||||||||| |||||||||| || GTAGTTGTTG GTGAACCTCC CTATTGTGAA AG 550 hqPGS_C06HBa0054K13.1-4+_SGN-E248840+ (8778 8797,8877 9059,9795 9996,10825 10969) ******************************************************************************** EST sequence 38 -strand 369 n (File: SGN-E224798-) 1 TGGTATCACT GATGTCATAT TCGGAGATTT TGAATTCCAT GGAACCCTCC CTATGACATG 61 GTTTAAGAGT GTAGATCAAT TACCCCTGCA TCAAGAACAG AACTCCTATG AACCTCTCTT 121 TCCATTCGGC TACGGATTAA CAAGTAAAAA CAAGGTGATC TAGACGAGAT GTGTCGAAGA 181 AAGGTTTAGT GAAATAGACA TGTCTATAAA GATGCGGACT ATCAGAAAGA CTGTATGAAG 241 CTTTATGCAA CCTCTTGTGT ACTTTGTACC ATTTGGTCTC TGGCATATGA TGTTACATTA 301 AGTCCAAATA ATTATATATT ATGTACTATT ATTCCCCAAA AAAAAAAAAA AAAAAAAAAA 361 AAAAAAAAA Predicted gene structure (within gDNA segment 10540 to 12442): Exon 1 11150 11487 ( 338 n); cDNA 1 338 ( 338 n); score: 0.991 Intron 1 11488 12233 ( 746 n); Pd: 0.000 (s: 0.94), Pa: 0.890 (s: 0) Exon 2 12234 12264 ( 31 n); cDNA 339 369 ( 31 n); score: 0.774 MATCH C06HBa0054K13.1-4+ SGN-E224798- 0.991 369 1.000 C PGS_C06HBa0054K13.1-4+_SGN-E224798- (11150 11487,12234 12264) Alignment (genomic DNA sequence = upper lines): TGGTATCACT GATGTCATAT TCGGAGATTT TGAATTCCAT GGAACCCTCC CTATGACATG 11209 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGTATCACT GATGTCATAT TCGGAGATTT TGAATTCCAT GGAACCCTCC CTATGACATG 60 GTTTAAGAGT GTAGATCAAT TACCCCTGCA TCAAGAACAG AACTCCTATG AACCTCTCTT 11269 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTTAAGAGT GTAGATCAAT TACCCCTGCA TCAAGAACAG AACTCCTATG AACCTCTCTT 120 TCCATTCGGC TACGGATTAA CAAGTAAAAA CAAGGTGATC TAGACGAGAT GTGTCGAAGA 11329 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCCATTCGGC TACGGATTAA CAAGTAAAAA CAAGGTGATC TAGACGAGAT GTGTCGAAGA 180 AAGGTTTAGT GAAATAGACA TGTCTATAAA GATGCGGACT ATCAGAAAGA CTGTATGAAG 11389 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGGTTTAGT GAAATAGACA TGTCTATAAA GATGCGGACT ATCAGAAAGA CTGTATGAAG 240 CTTTATGCAA CCTCTTGTGT ACTTTGTACC ATTTGGTCTC TGGCATATGA TGTTACATTA 11449 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTTATGCAA CCTCTTGTGT ACTTTGTACC ATTTGGTCTC TGGCATATGA TGTTACATTA 300 AGTCCAAATA ATTATATATT ATGTACTATT ATTACCATAT GTGAACAAGG AAAAATGCGT 11509 |||||||||| |||||||||| |||||||||| ||| || AGTCCAAATA ATTATATATT ATGTACTATT ATTCCCCA.. .......... .......... 338 AACAGTTTCA TTTAATAACG ATATAAAATA TTCAACTTAT TTTAGCATAT TCTTTAAAAT 11569 .......... .......... .......... .......... .......... .......... 338 TCTTAACCAT TTGAAAAAAT TACAAAAAAT TTTATCCTCC CTTATTTTCG AATGAATCAC 11629 .......... .......... .......... .......... .......... .......... 338 ATTACACGAT CGAACAACTG TGAATGCAAA AATAACAAAG TTATGAAAAA AACAATTCAA 11689 .......... .......... .......... .......... .......... .......... 338 AACACTTTAT ATAATAAAAG TAGTGTCTTC TTTACTATGT AAAAAGAAAA AAAACATGTA 11749 .......... .......... .......... .......... .......... .......... 338 AAAAATTGAT TTAATGGCCA TGAACTTACA TTGATGATGA AGTCTGACTC AGTTTATTAC 11809 .......... .......... .......... .......... .......... .......... 338 ATGTATAATT AATAACACTT CATATTGTTT ATATAGATAT AATATACCTT AATTTTCTCT 11869 .......... .......... .......... .......... .......... .......... 338 CTCTATTTTA CTTGTGCAAA TTAATAATGT AAATATTACT AAAAATTACA ATATTTTAAG 11929 .......... .......... .......... .......... .......... .......... 338 GGGAAAATAC CAAATAAAAT AAAATAAGAA AATATGAGAG AATTAAGTTC AATAATATAA 11989 .......... .......... .......... .......... .......... .......... 338 TGGACAAAGA AAAGGAAAGT TTTCGTAAAG AATCTTTTAA TAACATTGAA AAAAAAGTCT 12049 .......... .......... .......... .......... .......... .......... 338 GAGACTAGGG AAAAAAAGTG CCATAATATT TTTTCCTTTT AATTTTCTTC CAATTAAATT 12109 .......... .......... .......... .......... .......... .......... 338 TTCCTAAATT ATATTTCCTA ACATGCTTCT TTTGAATTGT TCATATATAA ATATTTTCCA 12169 .......... .......... .......... .......... .......... .......... 338 AGTCTATATC ATGGTAATTT TCATTTTGAA GAATATTTTT TAATTATTGA TGCAATTAAA 12229 .......... .......... .......... .......... .......... .......... 338 ACAGAAGGAA AAAAAAAAAG AAGAAAAATA ATGAA 12264 || || ||||||||| || ||||| | | || ....AAAAAA AAAAAAAAAA AAAAAAAAAA AAAAA 369 hqPGS_C06HBa0054K13.1-4+_SGN-E224798- (11150 11487,12234 12264) ******************************************************************************** EST sequence 41 -strand 333 n (File: SGN-E229036-) 1 TCCATGGAAC CCTCCCTATG ACATGGTTTA AGAGTGCAGA TCAATTACCC CTGCATCAAG 61 AACAGAACTC CTATGAACCT CTCTTTCCAT TGGGCTACGG ATTAACAAGT AAAAACAAGG 121 TGATCTAAAC AAAATGTGTC GAAAAAAGGT TTAGTGAAAT AAACATGTCT ATAAAAATGC 181 GGACTATCAG AAAGCCTGTA TGAAGCTTTA TGCAACCTCT TGTGTACTTT GGACCATTTG 241 GTCTCTGGCA TATGATGTTA CATTAAGTCC AAATAATTAT ATATTATGTA CTATTATTCC 301 CCAAAAAAAA AAAAAAAAAA AAAAAAAAAA AAA Predicted gene structure (within gDNA segment 10575 to 12432): Exon 1 11185 11489 ( 305 n); cDNA 1 305 ( 305 n); score: 0.954 Intron 1 11490 12233 ( 744 n); Pd: 0.000 (s: 0.92), Pa: 0.890 (s: 0) Exon 2 12234 12260 ( 27 n); cDNA 306 332 ( 27 n); score: 0.815 MATCH C06HBa0054K13.1-4+ SGN-E229036- 0.954 332 0.997 C PGS_C06HBa0054K13.1-4+_SGN-E229036- (11185 11489,12234 12260) Alignment (genomic DNA sequence = upper lines): TCCATGGAAC CCTCCCTATG ACATGGTTTA AGAGTGTAGA TCAATTACCC CTGCATCAAG 11244 |||||||||| |||||||||| |||||||||| |||||| ||| |||||||||| |||||||||| TCCATGGAAC CCTCCCTATG ACATGGTTTA AGAGTGCAGA TCAATTACCC CTGCATCAAG 60 AACAGAACTC CTATGAACCT CTCTTTCCAT TCGGCTACGG ATTAACAAGT AAAAACAAGG 11304 |||||||||| |||||||||| |||||||||| | |||||||| |||||||||| |||||||||| AACAGAACTC CTATGAACCT CTCTTTCCAT TGGGCTACGG ATTAACAAGT AAAAACAAGG 120 TGATCTAGAC GAGATGTGTC GAAGAAAGGT TTAGTGAAAT AGACATGTCT ATAAAGATGC 11364 ||||||| || | ||||||| ||| |||||| |||||||||| | |||||||| ||||| |||| TGATCTAAAC AAAATGTGTC GAAAAAAGGT TTAGTGAAAT AAACATGTCT ATAAAAATGC 180 GGACTATCAG AAAGACTGTA TGAAGCTTTA TGCAACCTCT TGTGTACTTT GTACCATTTG 11424 |||||||||| |||| ||||| |||||||||| |||||||||| |||||||||| | |||||||| GGACTATCAG AAAGCCTGTA TGAAGCTTTA TGCAACCTCT TGTGTACTTT GGACCATTTG 240 GTCTCTGGCA TATGATGTTA CATTAAGTCC AAATAATTAT ATATTATGTA CTATTATTAC 11484 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||| | GTCTCTGGCA TATGATGTTA CATTAAGTCC AAATAATTAT ATATTATGTA CTATTATTCC 300 CATATGTGAA CAAGGAAAAA TGCGTAACAG TTTCATTTAA TAACGATATA AAATATTCAA 11544 | | CCAAA..... .......... .......... .......... .......... .......... 305 CTTATTTTAG CATATTCTTT AAAATTCTTA ACCATTTGAA AAAATTACAA AAAATTTTAT 11604 .......... .......... .......... .......... .......... .......... 305 CCTCCCTTAT TTTCGAATGA ATCACATTAC ACGATCGAAC AACTGTGAAT GCAAAAATAA 11664 .......... .......... .......... .......... .......... .......... 305 CAAAGTTATG AAAAAAACAA TTCAAAACAC TTTATATAAT AAAAGTAGTG TCTTCTTTAC 11724 .......... .......... .......... .......... .......... .......... 305 TATGTAAAAA GAAAAAAAAC ATGTAAAAAA TTGATTTAAT GGCCATGAAC TTACATTGAT 11784 .......... .......... .......... .......... .......... .......... 305 GATGAAGTCT GACTCAGTTT ATTACATGTA TAATTAATAA CACTTCATAT TGTTTATATA 11844 .......... .......... .......... .......... .......... .......... 305 GATATAATAT ACCTTAATTT TCTCTCTCTA TTTTACTTGT GCAAATTAAT AATGTAAATA 11904 .......... .......... .......... .......... .......... .......... 305 TTACTAAAAA TTACAATATT TTAAGGGGAA AATACCAAAT AAAATAAAAT AAGAAAATAT 11964 .......... .......... .......... .......... .......... .......... 305 GAGAGAATTA AGTTCAATAA TATAATGGAC AAAGAAAAGG AAAGTTTTCG TAAAGAATCT 12024 .......... .......... .......... .......... .......... .......... 305 TTTAATAACA TTGAAAAAAA AGTCTGAGAC TAGGGAAAAA AAGTGCCATA ATATTTTTTC 12084 .......... .......... .......... .......... .......... .......... 305 CTTTTAATTT TCTTCCAATT AAATTTTCCT AAATTATATT TCCTAACATG CTTCTTTTGA 12144 .......... .......... .......... .......... .......... .......... 305 ATTGTTCATA TATAAATATT TTCCAAGTCT ATATCATGGT AATTTTCATT TTGAAGAATA 12204 .......... .......... .......... .......... .......... .......... 305 TTTTTTAATT ATTGATGCAA TTAAAACAGA AGGAAAAAAA AAAAGAAGAA AAATAA 12260 | | ||||||| |||| || || ||| || .......... .......... .........A AAAAAAAAAA AAAAAAAAAA AAAAAA 332 hqPGS_C06HBa0054K13.1-4+_SGN-E229036- (11185 11489,12234 12260) ******************************************************************************** EST sequence 40 -strand 227 n (File: SGN-E228748-) 1 AAGTAAAAAC AAGGTGATCT AGACGAGATG TGTCGAAGAA AGGTTTAGTG AAATAGACAT 61 GTCTATAAAG ATGCGGACTA TCAAAAAGAC TGTATGAAGC TTTATGCAAC CTCTTGTGTA 121 CTTTGTACCA TTTGGTCTCT GGCATATGAT GTTACATTAA GTCCAAATAA TTATATATTA 181 TGTACTATTA TTACCAAAAA AAAAAAAAAA AAAAAAAAAA AAAAAAA Predicted gene structure (within gDNA segment 10681 to 12396): Exon 1 11291 11489 ( 199 n); cDNA 1 199 ( 199 n); score: 0.985 Intron 1 11490 12233 ( 744 n); Pd: 0.000 (s: 0.96), Pa: 0.890 (s: 0) Exon 2 12234 12260 ( 27 n); cDNA 200 226 ( 27 n); score: 0.815 MATCH C06HBa0054K13.1-4+ SGN-E228748- 0.985 226 0.996 C PGS_C06HBa0054K13.1-4+_SGN-E228748- (11291 11489,12234 12260) Alignment (genomic DNA sequence = upper lines): AAGTAAAAAC AAGGTGATCT AGACGAGATG TGTCGAAGAA AGGTTTAGTG AAATAGACAT 11350 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGTAAAAAC AAGGTGATCT AGACGAGATG TGTCGAAGAA AGGTTTAGTG AAATAGACAT 60 GTCTATAAAG ATGCGGACTA TCAGAAAGAC TGTATGAAGC TTTATGCAAC CTCTTGTGTA 11410 |||||||||| |||||||||| ||| |||||| |||||||||| |||||||||| |||||||||| GTCTATAAAG ATGCGGACTA TCAAAAAGAC TGTATGAAGC TTTATGCAAC CTCTTGTGTA 120 CTTTGTACCA TTTGGTCTCT GGCATATGAT GTTACATTAA GTCCAAATAA TTATATATTA 11470 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTTGTACCA TTTGGTCTCT GGCATATGAT GTTACATTAA GTCCAAATAA TTATATATTA 180 TGTACTATTA TTACCATATG TGAACAAGGA AAAATGCGTA ACAGTTTCAT TTAATAACGA 11530 |||||||||| |||||| | TGTACTATTA TTACCAAAA. .......... .......... .......... .......... 199 TATAAAATAT TCAACTTATT TTAGCATATT CTTTAAAATT CTTAACCATT TGAAAAAATT 11590 .......... .......... .......... .......... .......... .......... 199 ACAAAAAATT TTATCCTCCC TTATTTTCGA ATGAATCACA TTACACGATC GAACAACTGT 11650 .......... .......... .......... .......... .......... .......... 199 GAATGCAAAA ATAACAAAGT TATGAAAAAA ACAATTCAAA ACACTTTATA TAATAAAAGT 11710 .......... .......... .......... .......... .......... .......... 199 AGTGTCTTCT TTACTATGTA AAAAGAAAAA AAACATGTAA AAAATTGATT TAATGGCCAT 11770 .......... .......... .......... .......... .......... .......... 199 GAACTTACAT TGATGATGAA GTCTGACTCA GTTTATTACA TGTATAATTA ATAACACTTC 11830 .......... .......... .......... .......... .......... .......... 199 ATATTGTTTA TATAGATATA ATATACCTTA ATTTTCTCTC TCTATTTTAC TTGTGCAAAT 11890 .......... .......... .......... .......... .......... .......... 199 TAATAATGTA AATATTACTA AAAATTACAA TATTTTAAGG GGAAAATACC AAATAAAATA 11950 .......... .......... .......... .......... .......... .......... 199 AAATAAGAAA ATATGAGAGA ATTAAGTTCA ATAATATAAT GGACAAAGAA AAGGAAAGTT 12010 .......... .......... .......... .......... .......... .......... 199 TTCGTAAAGA ATCTTTTAAT AACATTGAAA AAAAAGTCTG AGACTAGGGA AAAAAAGTGC 12070 .......... .......... .......... .......... .......... .......... 199 CATAATATTT TTTCCTTTTA ATTTTCTTCC AATTAAATTT TCCTAAATTA TATTTCCTAA 12130 .......... .......... .......... .......... .......... .......... 199 CATGCTTCTT TTGAATTGTT CATATATAAA TATTTTCCAA GTCTATATCA TGGTAATTTT 12190 .......... .......... .......... .......... .......... .......... 199 CATTTTGAAG AATATTTTTT AATTATTGAT GCAATTAAAA CAGAAGGAAA AAAAAAAAGA 12250 || ||| |||||||| | .......... .......... .......... .......... ...AAAAAAA AAAAAAAAAA 216 AGAAAAATAA 12260 | ||||| || AAAAAAAAAA 226 hqPGS_C06HBa0054K13.1-4+_SGN-E228748- (11291 11489,12234 12260) ******************************************************************************** EST sequence 28 -strand 626 n (File: SGN-E371109-) 1 ATTGTAGTTG TTGGTGAACC TCCCTATTGT GAAAGCGGTG GAGACAGCCA AGACCTCAGA 61 ATTCCTCTTG GCGGAGAAGA ACTAATAAGC TTGGTTGCAG ACAGAGTTCC AACGTTGGTG 121 ATATTGATCT CCGGAAGGCC TTTACATATA GAGCCTTCGA TTCTGGAGAA AATGGATGCC 181 TTCGTTGCTG CATGGTTACC GGGCACTGAG GGAACTGGTA TCACTGATGT CATATTCGGA 241 GATTTTGAAT TCCATGGAAC CCTCCCTATG ACATGGTTTA AGAGTGTAGA TCAATTACCC 301 CTGCATCAAG AACAGAACTC CTATGAACCT CTCTTTCCAT TCGGCTACGG ATTAACAAGT 361 AAAAACAAGG TGATCTAGAC GAGATGTGTC GAAGAAAGGT TTAGTGAAAT AGACATGTCT 421 ATAAAGATGC GGACTATCAG AAAGACTGTA TGAAGCTTTA TGCAACCTCT TGTGTACTTT 481 GTACCATTTG GTCTCTGGCA TATGATGTTA CATTAAGTCC AAATAATTAT ATATTATGTA 541 CTATTATTAC CATATGTGAA CAAGGAAAAA TGCGTAACAG TTTCATTTAA TAACGATATA 601 AAATATTCAA CTTATTTTAA AAAAAA Predicted gene structure (within gDNA segment 10325 to 12223): Exon 1 10935 11553 ( 619 n); cDNA 1 619 ( 619 n); score: 1.000 MATCH C06HBa0054K13.1-4+ SGN-E371109- 1.000 619 0.989 C PGS_C06HBa0054K13.1-4+_SGN-E371109- (10935 11553) Alignment (genomic DNA sequence = upper lines): ATTGTAGTTG TTGGTGAACC TCCCTATTGT GAAAGCGGTG GAGACAGCCA AGACCTCAGA 10994 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTGTAGTTG TTGGTGAACC TCCCTATTGT GAAAGCGGTG GAGACAGCCA AGACCTCAGA 60 ATTCCTCTTG GCGGAGAAGA ACTAATAAGC TTGGTTGCAG ACAGAGTTCC AACGTTGGTG 11054 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTCCTCTTG GCGGAGAAGA ACTAATAAGC TTGGTTGCAG ACAGAGTTCC AACGTTGGTG 120 ATATTGATCT CCGGAAGGCC TTTACATATA GAGCCTTCGA TTCTGGAGAA AATGGATGCC 11114 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATATTGATCT CCGGAAGGCC TTTACATATA GAGCCTTCGA TTCTGGAGAA AATGGATGCC 180 TTCGTTGCTG CATGGTTACC GGGCACTGAG GGAACTGGTA TCACTGATGT CATATTCGGA 11174 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCGTTGCTG CATGGTTACC GGGCACTGAG GGAACTGGTA TCACTGATGT CATATTCGGA 240 GATTTTGAAT TCCATGGAAC CCTCCCTATG ACATGGTTTA AGAGTGTAGA TCAATTACCC 11234 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATTTTGAAT TCCATGGAAC CCTCCCTATG ACATGGTTTA AGAGTGTAGA TCAATTACCC 300 CTGCATCAAG AACAGAACTC CTATGAACCT CTCTTTCCAT TCGGCTACGG ATTAACAAGT 11294 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGCATCAAG AACAGAACTC CTATGAACCT CTCTTTCCAT TCGGCTACGG ATTAACAAGT 360 AAAAACAAGG TGATCTAGAC GAGATGTGTC GAAGAAAGGT TTAGTGAAAT AGACATGTCT 11354 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAAACAAGG TGATCTAGAC GAGATGTGTC GAAGAAAGGT TTAGTGAAAT AGACATGTCT 420 ATAAAGATGC GGACTATCAG AAAGACTGTA TGAAGCTTTA TGCAACCTCT TGTGTACTTT 11414 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATAAAGATGC GGACTATCAG AAAGACTGTA TGAAGCTTTA TGCAACCTCT TGTGTACTTT 480 GTACCATTTG GTCTCTGGCA TATGATGTTA CATTAAGTCC AAATAATTAT ATATTATGTA 11474 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTACCATTTG GTCTCTGGCA TATGATGTTA CATTAAGTCC AAATAATTAT ATATTATGTA 540 CTATTATTAC CATATGTGAA CAAGGAAAAA TGCGTAACAG TTTCATTTAA TAACGATATA 11534 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTATTATTAC CATATGTGAA CAAGGAAAAA TGCGTAACAG TTTCATTTAA TAACGATATA 600 AAATATTCAA CTTATTTTA 11553 |||||||||| ||||||||| AAATATTCAA CTTATTTTA 619 hqPGS_C06HBa0054K13.1-4+_SGN-E371109- (10935 11553) ******************************************************************************** EST sequence 45 -strand 400 n (File: SGN-E240534-) 1 TCGATTCTGG AGAAAATGGA TGCCTTCGTT GCTGCATGGT TACCGGGCAC TGAGGGAACT 61 GGTATCACTG ATGTCATATT CGGAGATTTT GAATTCCATG GAACCCTCCC TATGACATGG 121 TTTAAGAGTG TAGATCAATT ACCCCTGCAT CAAGAACAGA ACTCCTATGA ACCTCTCTTT 181 CCATTCGGCT ACGGATTAAC AAGTAAAAAC AAGGTGATCT AGACGAGATG TGTCGAAGAA 241 AGGTTTAGTG AAATAGACAT GTCTATAAAG ATGCGGACTA TCAGAAAGAC TGTATGAAGC 301 TTTATGCAAC CTCTTGTGTA CTTTGTACCA TTTGGTCTCT GGCATATGAT GTTACATTAA 361 GTCCAAATAA TTATATATTA TGTAAAAAAA AAAAAAAAAA Predicted gene structure (within gDNA segment 10481 to 12234): Exon 1 11091 11474 ( 384 n); cDNA 1 384 ( 384 n); score: 1.000 PPA cDNA 385 400 MATCH C06HBa0054K13.1-4+ SGN-E240534- 1.000 384 0.960 C PGS_C06HBa0054K13.1-4+_SGN-E240534- (11091 11474) Alignment (genomic DNA sequence = upper lines): TCGATTCTGG AGAAAATGGA TGCCTTCGTT GCTGCATGGT TACCGGGCAC TGAGGGAACT 11150 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCGATTCTGG AGAAAATGGA TGCCTTCGTT GCTGCATGGT TACCGGGCAC TGAGGGAACT 60 GGTATCACTG ATGTCATATT CGGAGATTTT GAATTCCATG GAACCCTCCC TATGACATGG 11210 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGTATCACTG ATGTCATATT CGGAGATTTT GAATTCCATG GAACCCTCCC TATGACATGG 120 TTTAAGAGTG TAGATCAATT ACCCCTGCAT CAAGAACAGA ACTCCTATGA ACCTCTCTTT 11270 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTAAGAGTG TAGATCAATT ACCCCTGCAT CAAGAACAGA ACTCCTATGA ACCTCTCTTT 180 CCATTCGGCT ACGGATTAAC AAGTAAAAAC AAGGTGATCT AGACGAGATG TGTCGAAGAA 11330 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCATTCGGCT ACGGATTAAC AAGTAAAAAC AAGGTGATCT AGACGAGATG TGTCGAAGAA 240 AGGTTTAGTG AAATAGACAT GTCTATAAAG ATGCGGACTA TCAGAAAGAC TGTATGAAGC 11390 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGTTTAGTG AAATAGACAT GTCTATAAAG ATGCGGACTA TCAGAAAGAC TGTATGAAGC 300 TTTATGCAAC CTCTTGTGTA CTTTGTACCA TTTGGTCTCT GGCATATGAT GTTACATTAA 11450 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTATGCAAC CTCTTGTGTA CTTTGTACCA TTTGGTCTCT GGCATATGAT GTTACATTAA 360 GTCCAAATAA TTATATATTA TGTA 11474 |||||||||| |||||||||| |||| GTCCAAATAA TTATATATTA TGTA 384 hqPGS_C06HBa0054K13.1-4+_SGN-E240534- (11091 11474) ******************************************************************************** EST sequence 37 -strand 299 n (File: SGN-E224442-) 1 GTAGATCAAT TACCCCTGCA TCAAGAACAG AACTCCTATG AACCTCTCTT TCCATTCGGC 61 TACGGATTAA CAAGTAAAAA CAAGGTGATC TAGACCAAAT GTGTCGAAAA AAGGTTTAGT 121 GAAATAAACA TGTCTATAAA GATGCGGACT ATCAGAAAGA CTGTATGAAG CTTTATGCAA 181 CCTCTTGTGG ACTTTGTACC AATTGGTCTC TGGCATATGA TGTTACATTA AGTCCCAATA 241 ATTATATATT ATGGGCTATT ATTCCCCCNC CAAGAACAAA CAAAAAAAAA AAAAAAAAA Predicted gene structure (within gDNA segment 10610 to 12532): Exon 1 11220 11485 ( 266 n); cDNA 1 266 ( 266 n); score: 0.962 PPA cDNA 278 299 MATCH C06HBa0054K13.1-4+ SGN-E224442- 0.962 266 0.890 C PGS_C06HBa0054K13.1-4+_SGN-E224442- (11220 11485) Alignment (genomic DNA sequence = upper lines): GTAGATCAAT TACCCCTGCA TCAAGAACAG AACTCCTATG AACCTCTCTT TCCATTCGGC 11279 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTAGATCAAT TACCCCTGCA TCAAGAACAG AACTCCTATG AACCTCTCTT TCCATTCGGC 60 TACGGATTAA CAAGTAAAAA CAAGGTGATC TAGACGAGAT GTGTCGAAGA AAGGTTTAGT 11339 |||||||||| |||||||||| |||||||||| ||||| | || |||||||| | |||||||||| TACGGATTAA CAAGTAAAAA CAAGGTGATC TAGACCAAAT GTGTCGAAAA AAGGTTTAGT 120 GAAATAGACA TGTCTATAAA GATGCGGACT ATCAGAAAGA CTGTATGAAG CTTTATGCAA 11399 |||||| ||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAATAAACA TGTCTATAAA GATGCGGACT ATCAGAAAGA CTGTATGAAG CTTTATGCAA 180 CCTCTTGTGT ACTTTGTACC ATTTGGTCTC TGGCATATGA TGTTACATTA AGTCCAAATA 11459 ||||||||| |||||||||| | |||||||| |||||||||| |||||||||| ||||| |||| CCTCTTGTGG ACTTTGTACC AATTGGTCTC TGGCATATGA TGTTACATTA AGTCCCAATA 240 ATTATATATT ATGTACTATT ATTACC 11485 |||||||||| ||| ||||| ||| || ATTATATATT ATGGGCTATT ATTCCC 266 hqPGS_C06HBa0054K13.1-4+_SGN-E224442- (11220 11485) Total number of EST alignments reported: 46 ________________________________________________________________________________ Predicted gene locations (2) in segment 1 to 14213: PGL 1 (- strand): 3040 1 AGS-1 (2177 2169,2039 1848,1348 1133,598 1) SCR (e 0.778 d 0.900 a 0.821,e 1.000 d 0.999 a 0.909,e 1.000 d 0.898 a 0.983,e 0.998) Exon 1 2177 2169 ( 9 n); score: 0.778 Intron 1 2168 2040 ( 129 n); Pd: 0.900 Pa: 0.821 Exon 2 2039 1848 ( 192 n); score: 1.000 Intron 2 1847 1349 ( 499 n); Pd: 0.999 Pa: 0.909 Exon 3 1348 1133 ( 216 n); score: 1.000 Intron 3 1132 599 ( 534 n); Pd: 0.898 Pa: 0.983 Exon 4 598 1 ( 598 n); score: 0.998 PGS (492 1) SGN-E392517- PGS (433 1) SGN-E253834- PGS (231 1) SGN-E375471- PGS (118 1) SGN-E264485+ PGS (1904 1848,1348 1133,598 100) SGN-E261649+ PGS (1916 1848,1348 1133,598 243) SGN-E251964+ PGS (1933 1848,1348 1133,598 263) SGN-E275937+ PGS (1989 1848,1348 1133,598 358) SGN-E252920+ PGS (1904 1848,1348 1133,598 365) SGN-E256778+ PGS (2177 2169,2039 1848,1348 1133,598 396) SGN-E250218+ PGS (1960 1848,1348 1133,598 482) SGN-E250747+ 3-phase translation of AGS-1 (-strand): . : . . . . . 2177 TCTCCTAAA : AATTACCCTTATCTGAAGTTTGTTCACTTGCACTAATAGGAGTGACTAAAA S P K : N Y P Y L K F V H L H - - E - L K L L K : I T L I - S L F T C T N R S D - N S - : K L P L S E V C S L A L I G V T K . . . . . . 1988 TTTCATTCTTGTCAGTTGAACTGGAAGCAAAATTTGTAACATCACTTGTCTTTTCTTGTT F H S C Q L N W K Q N L - H H L S F L V F I L V S - T G S K I C N I T C L F L F I S F L S V E L E A K F V T S L V F S C . . . . . . 1928 TGTTGTTGTTGGTGGTGTTGGAAGACACCATAGTGGTCTTGTTTGGTGATTCTACAGAGA C C C W W C W K T P - W S C L V I L Q R V V V G G V G R H H S G L V W - F Y R D L L L L V V L E D T I V V L F G D S T E . . . : . . . 1868 CTTCTTTGAGGCTCATTTTAG : ACTCAACTAATGAAGTTCTAGACATTCTTGGACTTGGAC L L - G S F - : T Q L M K F - T F L D L D F F E A H F R : L N - - S S R H S W T W T T S L R L I L : D S T N E V L D I L G L G . . . . . . 1309 TTTCACCTATTTGTTCCTCCCTGTCAAAGTTCAACAGAGGGCCTTGACCTGTTGAGGACT F H L F V P P C Q S S T E G L D L L R T F T Y L F L P V K V Q Q R A L T C - G L L S P I C S S L S K F N R G P - P V E D . . . . . . 1249 TTGGTTTGAGTACGGACTTTGGTGATGATGAACAACTCGAGGCTGTAGGGACTTCTCGGA L V - V R T L V M M N N S R L - G L L G W F E Y G L W - - - T T R G C R D F S D F G L S T D F G D D E Q L E A V G T S R . . . . . . : 1189 TTAAAGATTGTAAGCTGATCAAGTCTTGATTGACAGAGCTCTCCGATGGAATTCCAG : AAG L K I V S - S S L D - Q S S P M E F Q : K - R L - A D Q V L I D R A L R W N S R : S I K D C K L I K S - L T E L S D G I P : E . . . . . . 595 TCGAGGAGCCTTCACTTGCTGAGAACTTTGGTTGAATCATAGTGTTGGGAGAGGGGGATG S R S L H L L R T L V E S - C W E R G M R G A F T C - E L W L N H S V G R G G - V E E P S L A E N F G - I I V L G E G D . . . . . . 535 AAGTAGAGGCCCTCGGAACTTGTTCAACCACCAAATCATGTGGTGATGATGATGATGATG K - R P S E L V Q P P N H V V M M M M M S R G P R N L F N H Q I M W - - - - - C E V E A L G T C S T T K S C G D D D D D . . . . . . 475 CTTGTGAACCATCAATACTCTGGCTAATTGTAGAAAAAACTTCTTCAATAGGCTGTTTAC L V N H Q Y S G - L - K K L L Q - A V Y L - T I N T L A N C R K N F F N R L F T A C E P S I L W L I V E K T S S I G C L . . . . . . 415 CACCATTATCGTGAAGTGCTTCATGAATTTCATTCCTAGGGAGAGACTTTGAATTTTCTG H H Y R E V L H E F H S - G E T L N F L T I I V K C F M N F I P R E R L - I F C P P L S - S A S - I S F L G R D F E F S . . . . . . 355 CAGACTTCTGTGTCTTCGGATGTGGTACTGAACTTTGCACTGTCGGATTTCTTAACGTAA Q T S V S S D V V L N F A L S D F L T - R L L C L R M W Y - T L H C R I S - R K A D F C V F G C G T E L C T V G F L N V . . . . . . 295 GTTTTGAGCTCCGAGTACTGGTTGGATCACAACTTTCAGCAGTTACTTCATCTGTCAGCT V L S S E Y W L D H N F Q Q L L H L S A F - A P S T G W I T T F S S Y F I C Q L S F E L R V L V G S Q L S A V T S S V S . . . . . . 235 TATTTTTTAGTTTGCGCCTATCTACTTGTTGAGCCTCCAAATTTGAACTAGATCCTTTAT Y F L V C A Y L L V E P P N L N - I L Y I F - F A P I Y L L S L Q I - T R S F I L F F S L R L S T C - A S K F E L D P L . . . . . . 175 CAATGGAAAATGTTGGTTGCGAAACAGACTTAGACGATGATGTACTAGAAGAGGCTTCAA Q W K M L V A K Q T - T M M Y - K R L Q N G K C W L R N R L R R - C T R R G F K S M E N V G C E T D L D D D V L E E A S . . . . . . 115 ATGAGTGATGTCCTTGTCCAATAGTCGAAAATGCCACAGGTTCACTATGTTGTTCGCTGG M S D V L V Q - S K M P Q V H Y V V R W - V M S L S N S R K C H R F T M L F A G N E - C P C P I V E N A T G S L C C S L . . . . . . 55 CACTGTCTAGAACGAGTGCAGCGACATCGTTCTCTTTGGCTGAAATTGAATTTTC H C L E R V Q R H R S L W L K L N F T V - N E C S D I V L F G - N - I F A L S R T S A A T S F S L A E I E F Maximal non-overlapping open reading frames (>= 64 codons): >C06HBa0054K13.1-4-_PGL-1_AGS-1_PPS_1 (2169 2169,2039 1848,1348 1263) (frame '0'; 276 bp, 92 residues) 1 KLPLSEVCSL ALIGVTKISF LSVELEAKFV TSLVFSCLLL LVVLEDTIVV LFGDSTETSL 61 RLILDSTNEV LDILGLGLSP ICSSLSKFNR GP- AGS-2 (3040 2976,2000 1848,1348 1133,598 416) SCR (e 1.000 d 0.871 a 0.198,e 1.000 d 0.999 a 0.909,e 1.000 d 0.898 a 0.983,e 1.000) Exon 1 3040 2976 ( 65 n); score: 1.000 Intron 1 2975 2001 ( 975 n); Pd: 0.871 Pa: 0.198 Exon 2 2000 1848 ( 153 n); score: 1.000 Intron 2 1847 1349 ( 499 n); Pd: 0.999 Pa: 0.909 Exon 3 1348 1133 ( 216 n); score: 1.000 Intron 3 1132 599 ( 534 n); Pd: 0.898 Pa: 0.983 Exon 4 598 416 ( 183 n); score: 1.000 PGS (3040 2976,2000 1848,1348 1133,598 416) SGN-E256238+ 3-phase translation of AGS-2 (-strand): . . . . . . 3040 TCAACTTTGGCTTCTTATTCTTATTTGTCTTTGCTGCAAAAATCTTACGCTTTTTGTCGC S T L A S Y S Y L S L L Q K S Y A F C R Q L W L L I L I C L C C K N L T L F V A N F G F L F L F V F A A K I L R F L S . : . . . . . 2980 CTCAA : GAGTGACTAAAATTTCATTCTTGTCAGTTGAACTGGAAGCAAAATTTGTAACATC L K : S D - N F I L V S - T G S K I C N I S : R V T K I S F L S V E L E A K F V T S P Q : E - L K F H S C Q L N W K Q N L - H . . . . . . 1945 ACTTGTCTTTTCTTGTTTGTTGTTGTTGGTGGTGTTGGAAGACACCATAGTGGTCTTGTT T C L F L F V V V G G V G R H H S G L V L V F S C L L L L V V L E D T I V V L F H L S F L V C C C W W C W K T P - W S C . . . . : . . 1885 TGGTGATTCTACAGAGACTTCTTTGAGGCTCATTTTAG : ACTCAACTAATGAAGTTCTAGA W - F Y R D F F E A H F R : L N - - S S R G D S T E T S L R L I L : D S T N E V L D L V I L Q R L L - G S F - : T Q L M K F - . . . . . . 1326 CATTCTTGGACTTGGACTTTCACCTATTTGTTCCTCCCTGTCAAAGTTCAACAGAGGGCC H S W T W T F T Y L F L P V K V Q Q R A I L G L G L S P I C S S L S K F N R G P T F L D L D F H L F V P P C Q S S T E G . . . . . . 1266 TTGACCTGTTGAGGACTTTGGTTTGAGTACGGACTTTGGTGATGATGAACAACTCGAGGC L T C - G L W F E Y G L W - - - T T R G - P V E D F G L S T D F G D D E Q L E A L D L L R T L V - V R T L V M M N N S R . . . . . . 1206 TGTAGGGACTTCTCGGATTAAAGATTGTAAGCTGATCAAGTCTTGATTGACAGAGCTCTC C R D F S D - R L - A D Q V L I D R A L V G T S R I K D C K L I K S - L T E L S L - G L L G L K I V S - S S L D - Q S S . . : . . . . 1146 CGATGGAATTCCAG : AAGTCGAGGAGCCTTCACTTGCTGAGAACTTTGGTTGAATCATAGT R W N S R : S R G A F T C - E L W L N H S D G I P : E V E E P S L A E N F G - I I V P M E F Q : K S R S L H L L R T L V E S - . . . . . . 552 GTTGGGAGAGGGGGATGAAGTAGAGGCCCTCGGAACTTGTTCAACCACCAAATCATGTGG V G R G G - S R G P R N L F N H Q I M W L G E G D E V E A L G T C S T T K S C G C W E R G M K - R P S E L V Q P P N H V . . . . . . 492 TGATGATGATGATGATGCTTGTGAACCATCAATACTCTGGCTAATTGTAGAAAAAACTTC - - - - - C L - T I N T L A N C R K N F D D D D D A C E P S I L W L I V E K T S V M M M M M L V N H Q Y S G - L - K K L . . 432 TTCAATAGGCTGTTTAC F N R L F S I G C L L Q - A V Y Maximal non-overlapping open reading frames (>= 64 codons): >C06HBa0054K13.1-4-_PGL-1_AGS-2_PPS_1 (3039 2976,2000 1848,1348 1263) (frame '2'; 300 bp, 100 residues) 1 QLWLLILICL CCKNLTLFVA SRVTKISFLS VELEAKFVTS LVFSCLLLLV VLEDTIVVLF 61 GDSTETSLRL ILDSTNEVLD ILGLGLSPIC SSLSKFNRGP - AGS-3 (2250 1848,1348 1138) SCR (e 1.000 d 0.999 a 0.909,e 1.000) Exon 1 2250 1848 ( 403 n); score: 1.000 Intron 1 1847 1349 ( 499 n); Pd: 0.999 Pa: 0.909 Exon 2 1348 1138 ( 211 n); score: 1.000 PGS (2156 1848,1348 1138) SGN-E258728+ PGS (2249 1848,1348 1213) SGN-E256700+ PGS (2250 1848,1348 1239) SGN-E392266+ 3-phase translation of AGS-3 (-strand): . . . . . . 2250 TTACAAATGAAAATTGAGTTACACATTTAAGGAGTCTCATGGGAAAAGAAGAAACAAACT L Q M K I E L H I - G V S W E K K K Q T Y K - K L S Y T F K E S H G K R R N K L T N E N - V T H L R S L M G K E E T N . . . . . . 2190 ATGTTGTTTGAACTCTCCTAAAATATCCCTCGGTGTTTTTGAAGAGTCTGAACAATATAG M L F E L S - N I P R C F - R V - T I - C C L N S P K I S L G V F E E S E Q Y R Y V V - T L L K Y P S V F L K S L N N I . . . . . . 2130 AAAACAAGTGCATGTTAACTATCCCCTTATTAGTCTTTAGCCTTCTCTTTACAATCTCTT K T S A C - L S P Y - S L A F S L Q S L K Q V H V N Y P L I S L - P S L Y N L F E N K C M L T I P L L V F S L L F T I S . . . . . . 2070 TTTTCACTATGTGTTTCCTTTAATGCTGCAGAATTACCCTTATCTGAAGTTTGTTCACTT F S L C V S F N A A E L P L S E V C S L F H Y V F P L M L Q N Y P Y L K F V H L F F T M C F L - C C R I T L I - S L F T . . . . . . 2010 GCACTAATAGGAGTGACTAAAATTTCATTCTTGTCAGTTGAACTGGAAGCAAAATTTGTA A L I G V T K I S F L S V E L E A K F V H - - E - L K F H S C Q L N W K Q N L - C T N R S D - N F I L V S - T G S K I C . . . . . . 1950 ACATCACTTGTCTTTTCTTGTTTGTTGTTGTTGGTGGTGTTGGAAGACACCATAGTGGTC T S L V F S C L L L L V V L E D T I V V H H L S F L V C C C W W C W K T P - W S N I T C L F L F V V V G G V G R H H S G . . . . . : . 1890 TTGTTTGGTGATTCTACAGAGACTTCTTTGAGGCTCATTTTAG : ACTCAACTAATGAAGTT L F G D S T E T S L R L I L : D S T N E V C L V I L Q R L L - G S F - : T Q L M K F L V W - F Y R D F F E A H F R : L N - - S . . . . . . 1331 CTAGACATTCTTGGACTTGGACTTTCACCTATTTGTTCCTCCCTGTCAAAGTTCAACAGA L D I L G L G L S P I C S S L S K F N R - T F L D L D F H L F V P P C Q S S T E S R H S W T W T F T Y L F L P V K V Q Q . . . . . . 1271 GGGCCTTGACCTGTTGAGGACTTTGGTTTGAGTACGGACTTTGGTGATGATGAACAACTC G P - P V E D F G L S T D F G D D E Q L G L D L L R T L V - V R T L V M M N N S R A L T C - G L W F E Y G L W - - - T T . . . . . . 1211 GAGGCTGTAGGGACTTCTCGGATTAAAGATTGTAAGCTGATCAAGTCTTGATTGACAGAG E A V G T S R I K D C K L I K S - L T E R L - G L L G L K I V S - S S L D - Q S R G C R D F S D - R L - A D Q V L I D R . . 1151 CTCTCCGATGGAAT L S D G S P M E A L R W N Maximal non-overlapping open reading frames (>= 64 codons): >C06HBa0054K13.1-4-_PGL-1_AGS-3_PPS_1 (2097 1848,1348 1263) (frame '1'; 333 bp, 111 residues) 1 SLAFSLQSLF SLCVSFNAAE LPLSEVCSLA LIGVTKISFL SVELEAKFVT SLVFSCLLLL 61 VVLEDTIVVL FGDSTETSLR LILDSTNEVL DILGLGLSPI CSSLSKFNRG P- AGS-4 (1636 1351) SCR (e 1.000) Exon 1 1636 1351 ( 286 n); score: 1.000 PGS (1636 1351) SGN-E375470+ 3-phase translation of AGS-4 (-strand): . . . . . . 1636 TGACTCCGTATTACATTATTTTCACAAGCACAAAAATATGATATAATGAATGTAACAAGA - L R I T L F S Q A Q K Y D I M N V T R D S V L H Y F H K H K N M I - - M - Q E T P Y Y I I F T S T K I - Y N E C N K . . . . . . 1576 AAAGACCATCTATTTATGCTGTTTCAAAGAGAGGGTAAGTTTTATGTACTGATAAGTGCG K D H L F M L F Q R E G K F Y V L I S A K T I Y L C C F K E R V S F M Y - - V R K R P S I Y A V S K R G - V L C T D K C . . . . . . 1516 AAAATAGGAGAACCTATTCTCTAAAGGGTGGTTTGGTTTATCATACTAACAAAAATAATC K I G E P I L - R V V W F I I L T K I I K - E N L F S K G W F G L S Y - Q K - S E N R R T Y S L K G G L V Y H T N K N N . . . . . . 1456 CTACCATACTGTCAGTATATATAACTTAAGTAATTGAAGGTATCATTTGATCCAGTCTAT L P Y C Q Y I - L K - L K V S F D P V Y Y H T V S I Y N L S N - R Y H L I Q S I P T I L S V Y I T - V I E G I I - S S L . . . . . 1396 ATAAACGTACCGTTTTAGCATCTGTATGATGAAGTTGGTCTGATGC I N V P F - H L Y D E V G L M - T Y R F S I C M M K L V - C Y K R T V L A S V - - S W S D Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-4 (+strand): . . . . . . 1351 GCATCAGACCAACTTCATCATACAGATGCTAAAACGGTACGTTTATATAGACTGGATCAA A S D Q L H H T D A K T V R L Y R L D Q H Q T N F I I Q M L K R Y V Y I D W I K I R P T S S Y R C - N G T F I - T G S . . . . . . 1411 ATGATACCTTCAATTACTTAAGTTATATATACTGACAGTATGGTAGGATTATTTTTGTTA M I P S I T - V I Y T D S M V G L F L L - Y L Q L L K L Y I L T V W - D Y F C - N D T F N Y L S Y I Y - Q Y G R I I F V . . . . . . 1471 GTATGATAAACCAAACCACCCTTTAGAGAATAGGTTCTCCTATTTTCGCACTTATCAGTA V - - T K P P F R E - V L L F S H L S V Y D K P N H P L E N R F S Y F R T Y Q Y S M I N Q T T L - R I G S P I F A L I S . . . . . . 1531 CATAAAACTTACCCTCTCTTTGAAACAGCATAAATAGATGGTCTTTTCTTGTTACATTCA H K T Y P L F E T A - I D G L F L L H S I K L T L S L K Q H K - M V F S C Y I H T - N L P S L - N S I N R W S F L V T F . . . . . 1591 TTATATCATATTTTTGTGCTTGTGAAAATAATGTAATACGGAGTCA L Y H I F V L V K I M - Y G V Y I I F L C L - K - C N T E S I I S Y F C A C E N N V I R S Maximal non-overlapping open reading frames (>= 64 codons): none PGL 2 (+ strand): 4354 12264 AGS-1 (4354 4632,6084 6288,6382 6472,7170 7315,7658 7901,8693 8797,8877 9059,9795 9996,10825 11553) SCR (e 1.000 d 1.000 a 0.998,e 1.000 d 0.992 a 0.884,e 1.000 d 0.977 a 1.000,e 1.000 d 0.974 a 0.953,e 1.000 d 0.998 a 0.587,e 1.000 d 0.998 a 0.990,e 1.000 d 0.921 a 0.825,e 1.000 d 1.000 a 0.999,e 1.000) Exon 1 4354 4632 ( 279 n); score: 1.000 Intron 1 4633 6083 (1451 n); Pd: 1.000 Pa: 0.998 Exon 2 6084 6288 ( 205 n); score: 1.000 Intron 2 6289 6381 ( 93 n); Pd: 0.992 Pa: 0.884 Exon 3 6382 6472 ( 91 n); score: 1.000 Intron 3 6473 7169 ( 697 n); Pd: 0.977 Pa: 1.000 Exon 4 7170 7315 ( 146 n); score: 1.000 Intron 4 7316 7657 ( 342 n); Pd: 0.974 Pa: 0.953 Exon 5 7658 7901 ( 244 n); score: 1.000 Intron 5 7902 8692 ( 791 n); Pd: 0.998 Pa: 0.587 Exon 6 8693 8797 ( 105 n); score: 1.000 Intron 6 8798 8876 ( 79 n); Pd: 0.998 Pa: 0.990 Exon 7 8877 9059 ( 183 n); score: 1.000 Intron 7 9060 9794 ( 735 n); Pd: 0.921 Pa: 0.825 Exon 8 9795 9996 ( 202 n); score: 1.000 Intron 8 9997 10824 ( 828 n); Pd: 1.000 Pa: 0.999 Exon 9 10825 11553 ( 729 n); score: 1.000 PGS (4354 4632,6084 6288,6382 6453) SGN-E211927+ PGS (4354 4632) SGN-E337557+ PGS (4355 4632) SGN-E337564+ PGS (4360 4632,6084 6288,6382 6472,7170 7306) SGN-E314778+ PGS (4363 4632,6084 6288,6382 6460) SGN-E314534+ PGS (4372 4632,6084 6288,6382 6472,7170 7275) SGN-E317820+ PGS (4387 4632,6084 6288,6382 6472,7170 7192) SGN-E312056+ PGS (6178 6288,6382 6472,7170 7315,7658 7901,8693 8797,8877 8969) SGN-E260789+ PGS (6380 6472,7170 7315,7658 7786) SGN-E244575+ PGS (6380 6472,7170 7315,7658 7753) SGN-E228067+ PGS (6382 6472,7170 7315,7658 7901,8693 8797,8877 8913) SGN-E268863+ PGS (6413 6472,7170 7315,7658 7901,8693 8797,8877 8954) SGN-E371110+ PGS (6413 6472,7170 7315,7658 7901,8693 8797,8877 8934) SGN-E270921+ PGS (7194 7315,7658 7901,8693 8797) SGN-E276764+ PGS (7208 7315,7658 7901,8693 8797,8877 9059,9795 9883) SGN-E262875+ PGS (7208 7315,7658 7901,8693 8797,8877 9059,9795 9843) SGN-E263254+ PGS (7256 7315,7658 7901,8693 8797) SGN-E274870+ PGS (7658 7901,8693 8797,8877 9059) SGN-E250755+ PGS (7678 7901,8693 8797,8877 9021) SGN-E251432+ PGS (7792 7901,8693 8797,8877 9059,9795 9959) SGN-E260291+ PGS (7797 7901,8693 8797,8877 9059,9795 9862) SGN-E291669+ PGS (7830 7901,8693 8797,8877 9059,9795 9996,10825 10859) SGN-E210532+ PGS (8778 8797,8877 9059,9795 9996,10825 10969) SGN-E248840+ PGS (10935 11553) SGN-E371109- PGS (11091 11474) SGN-E240534- PGS (11220 11485) SGN-E224442- 3-phase translation of AGS-1 (+strand): . . . . . . 4354 CTATTCCACTTATCACCATTTTCTTCATTTCTCAATAATCCCACTTTTAAGTTCTTTCCC L F H L S P F S S F L N N P T F K F F P Y S T Y H H F L H F S I I P L L S S F P I P L I T I F F I S Q - S H F - V L S . . . . . . 4414 AGTTACTATTAACACAAATATTTAAGAAAAATCTCAACTTTTTTGTTGAATACTTGTAAT S Y Y - H K Y L R K I S T F L L N T C N V T I N T N I - E K S Q L F C - I L V I Q L L L T Q I F K K N L N F F V E Y L - . . . . . . 4474 AAGCAGAAATGGATTTTGTGTACAAGAACCCATCAGCTCTTATTGAGGAAAGAGTAAAAG K Q K W I L C T R T H Q L L L R K E - K S R N G F C V Q E P I S S Y - G K S K R - A E M D F V Y K N P S A L I E E R V K . . . . . . 4534 ATTTGTTGTCTCGGATGACACTTGAAGAAAAAATAGGCCAAATGACTCAGATCGAACGCA I C C L G - H L K K K - A K - L R S N A F V V S D D T - R K N R P N D S D R T Q D L L S R M T L E E K I G Q M T Q I E R . . . . : . . 4594 GTGTTGCTACCCCCTCTGTCATTACTGACCTTTCTATAG : GGAGTATACTCAGTGTTGGAG V L L P P L S L L T F L - : G V Y S V L E C C Y P L C H Y - P F Y R : E Y T Q C W R S V A T P S V I T D L S I : G S I L S V G . . . . . . 6105 GCAGTGCGCCATTTGAGGATGCTCCATCGGAAGCTTGGGCAGATATGGTTGACGGATTTC A V R H L R M L H R K L G Q I W L T D F Q C A I - G C S I G S L G R Y G - R I S G S A P F E D A P S E A W A D M V D G F . . . . . . 6165 AAAAGGCTGCGCTGGAATCACGGCTTGGGATTCCGCTTCTTTATGGAGTTGACGCTATTC K R L R W N H G L G F R F F M E L T L F K G C A G I T A W D S A S L W S - R Y S Q K A A L E S R L G I P L L Y G V D A I . . . . . . 6225 ATGGCAATAACAATGTTTATGGTGCTACCGTTTTTCCACAAAATGTGGGCCTTGGAGCCA M A I T M F M V L P F F H K M W A L E P W Q - Q C L W C Y R F S T K C G P W S H H G N N N V Y G A T V F P Q N V G L G A . : . . . . . 6285 CCAG : AGATGCAGACTTGGTTCAGAAGATTGGGATTGTGACTGCTCTTGAAGTCAGGGCTT P : E M Q T W F R R L G L - L L L K S G L Q : R C R L G S E D W D C D C S - S Q G L T R : D A D L V Q K I G I V T A L E V R A . . . . : . . 6438 GTGGCATTAACTATACTTTTGCTCCCTGTGTTGCT : GTATGTAGAGATCCCAGGTGGGGAA V A L T I L L L P V L L : Y V E I P G G E W H - L Y F C S L C C : C M - R S Q V G K C G I N Y T F A P C V A : V C R D P R W G . . . . . . 7195 GATGCTATGAGAGTTATGGCGAAGACACCGAACTTATTAGGAAGATGACCTCAATTGTCA D A M R V M A K T P N L L G R - P Q L S M L - E L W R R H R T Y - E D D L N C H R C Y E S Y G E D T E L I R K M T S I V . . . . . . 7255 CAGGCTTGCAAGGGCAACCACCTCCTGGATACCCCCAAAACTATCCTTTTCTAGCTGGAA Q A C K G N H L L D T P K T I L F - L E R L A R A T T S W I P P K L S F S S W K T G L Q G Q P P P G Y P Q N Y P F L A G . : . . . . . 7315 G : AGACAAGGTTGTTGCCTGTGCAAAGCACTTTGTTGGAGATGGGGGTACTGACCGAGGTA : E T R L L P V Q S T L L E M G V L T E V : R Q G C C L C K A L C W R W G Y - P R Y R : D K V V A C A K H F V G D G G T D R G . . . . . . 7717 TAAATGAGGGAAATACCATATCATCGTATGAAGATCTAGAGAGAATACATATTCCCCCAT - M R E I P Y H R M K I - R E Y I F P H K - G K Y H I I V - R S R E N T Y S P I I N E G N T I S S Y E D L E R I H I P P . . . . . . 7777 ATATTGACTGTATTTCTCAGGGAGTTTGCACAGTAATGGCATCCTACTCTAAATGGAATG I L T V F L R E F A Q - W H P T L N G M Y - L Y F S G S L H S N G I L L - M E W Y I D C I S Q G V C T V M A S Y S K W N . . . . . . 7837 GAAGCCACCTGCATTCTAGCCACTTTCTTCTTACTGAAGTTTTGAAAGGGAAGCTCGGAT E A T C I L A T F F L L K F - K G S S D K P P A F - P L S S Y - S F E R E A R I G S H L H S S H F L L T E V L K G K L G . : . . . . . 7897 TTAAG : GGCTTTGTTATTTCTGATTCCGAAGGAATTGACCGATTTTTCCATCCTCATGGAT L R : A L L F L I P K E L T D F S I L M D - : G L C Y F - F R R N - P I F P S S W I F K : G F V I S D S E G I D R F F H P H G . . . . . : . 8748 CTAACTATGACCAAAGTATTTTGGCAGCAATCAATGCAGGGATTGACATG : GTGATGGTTC L T M T K V F W Q Q S M Q G L T W : - W F - L - P K Y F G S N Q C R D - H : G D G S S N Y D Q S I L A A I N A G I D M : V M V . . . . . . 8887 CTTTTCGGTATCAATTATTTCTCGATCATTTGAAATATCTTGTGGAATCTGGGAATATTC L F G I N Y F S I I - N I L W N L G I F F S V S I I S R S F E I S C G I W E Y S P F R Y Q L F L D H L K Y L V E S G N I . . . . . . 8947 CAATGACCAGAATTGATGATGCTGTTGAAAGGATCCTGAGAGTTAAGTTTGTTTCCGGAG Q - P E L M M L L K G S - E L S L F P E N D Q N - - C C - K D P E S - V C F R S P M T R I D D A V E R I L R V K F V S G . . . . . . : 9007 CTTTTGAGAACCCTCTGAGTGATAGGTCATTGTTGGATACCGTTGGTTGTCAT : CAACATC L L R T L - V I G H C W I P L V V I : N I F - E P S E - - V I V G Y R W L S : S T S A F E N P L S D R S L L D T V G C H : Q H . . . . . . 9802 GCGAATTAGCACGTGAAGCAGTTCGCAAATCACTGGTTCTTCTAAAGAATGGGAAGGATG A N - H V K Q F A N H W F F - R M G R M R I S T - S S S Q I T G S S K E W E G C R E L A R E A V R K S L V L L K N G K D . . . . . . 9862 TAACAAAACCATTTCTTCCGCTAGATAGGAAGGCAAAGAGAATTCTTGTAGCAGGAAAAC - Q N H F F R - I G R Q R E F L - Q E N N K T I S S A R - E G K E N S C S R K T V T K P F L P L D R K A K R I L V A G K . . . . . . 9922 ATGCTGACGACCTTGGATTCCAATGTGGAGGGTGGACTAAAACATGGGAAGGAATGGGCG M L T T L D S N V E G G L K H G K E W A C - R P W I P M W R V D - N M G R N G R H A D D L G F Q C G G W T K T W E G M G . . : . . . . 9982 GAAGAATCACGATTG : GTACAACTATTCTGGAAGCTATTAAAGATGCTGTTGGAGGGGAAA E E S R L : V Q L F W K L L K M L L E G K K N H D W : Y N Y S G S Y - R C C W R G N G R I T I : G T T I L E A I K D A V G G E . . . . . . 10870 CAGAACTGGTATATGAAGAAAATCCTTCACCAGACACCTTTGCGAGTCAAGACTTCTCTT Q N W Y M K K I L H Q T P L R V K T S L R T G I - R K S F T R H L C E S R L L L T E L V Y E E N P S P D T F A S Q D F S . . . . . . 10930 ATTGCATTGTAGTTGTTGGTGAACCTCCCTATTGTGAAAGCGGTGGAGACAGCCAAGACC I A L - L L V N L P I V K A V E T A K T L H C S C W - T S L L - K R W R Q P R P Y C I V V V G E P P Y C E S G G D S Q D . . . . . . 10990 TCAGAATTCCTCTTGGCGGAGAAGAACTAATAAGCTTGGTTGCAGACAGAGTTCCAACGT S E F L L A E K N - - A W L Q T E F Q R Q N S S W R R R T N K L G C R Q S S N V L R I P L G G E E L I S L V A D R V P T . . . . . . 11050 TGGTGATATTGATCTCCGGAAGGCCTTTACATATAGAGCCTTCGATTCTGGAGAAAATGG W - Y - S P E G L Y I - S L R F W R K W G D I D L R K A F T Y R A F D S G E N G L V I L I S G R P L H I E P S I L E K M . . . . . . 11110 ATGCCTTCGTTGCTGCATGGTTACCGGGCACTGAGGGAACTGGTATCACTGATGTCATAT M P S L L H G Y R A L R E L V S L M S Y C L R C C M V T G H - G N W Y H - C H I D A F V A A W L P G T E G T G I T D V I . . . . . . 11170 TCGGAGATTTTGAATTCCATGGAACCCTCCCTATGACATGGTTTAAGAGTGTAGATCAAT S E I L N S M E P S L - H G L R V - I N R R F - I P W N P P Y D M V - E C R S I F G D F E F H G T L P M T W F K S V D Q . . . . . . 11230 TACCCCTGCATCAAGAACAGAACTCCTATGAACCTCTCTTTCCATTCGGCTACGGATTAA Y P C I K N R T P M N L S F H S A T D - T P A S R T E L L - T S L S I R L R I N L P L H Q E Q N S Y E P L F P F G Y G L . . . . . . 11290 CAAGTAAAAACAAGGTGATCTAGACGAGATGTGTCGAAGAAAGGTTTAGTGAAATAGACA Q V K T R - S R R D V S K K G L V K - T K - K Q G D L D E M C R R K V - - N R H T S K N K V I - T R C V E E R F S E I D . . . . . . 11350 TGTCTATAAAGATGCGGACTATCAGAAAGACTGTATGAAGCTTTATGCAACCTCTTGTGT C L - R C G L S E R L Y E A L C N L L C V Y K D A D Y Q K D C M K L Y A T S C V M S I K M R T I R K T V - S F M Q P L V . . . . . . 11410 ACTTTGTACCATTTGGTCTCTGGCATATGATGTTACATTAAGTCCAAATAATTATATATT T L Y H L V S G I - C Y I K S K - L Y I L C T I W S L A Y D V T L S P N N Y I L Y F V P F G L W H M M L H - V Q I I I Y . . . . . . 11470 ATGTACTATTATTACCATATGTGAACAAGGAAAAATGCGTAACAGTTTCATTTAATAACG M Y Y Y Y H M - T R K N A - Q F H L I T C T I I T I C E Q G K M R N S F I - - R Y V L L L P Y V N K E K C V T V S F N N . . . 11530 ATATAAAATATTCAACTTATTTTA I - N I Q L I L Y K I F N L F D I K Y S T Y F Maximal non-overlapping open reading frames (>= 64 codons): >C06HBa0054K13.1-4+_PGL-2_AGS-1_PPS_1 (4476 4632,6084 6288,6382 6472,7170 7315,7658 7901,8693 8797,8877 9059,9795 9996,10825 11312) (frame '0'; 1818 bp, 606 residues) 1 AEMDFVYKNP SALIEERVKD LLSRMTLEEK IGQMTQIERS VATPSVITDL SIGSILSVGG 61 SAPFEDAPSE AWADMVDGFQ KAALESRLGI PLLYGVDAIH GNNNVYGATV FPQNVGLGAT 121 RDADLVQKIG IVTALEVRAC GINYTFAPCV AVCRDPRWGR CYESYGEDTE LIRKMTSIVT 181 GLQGQPPPGY PQNYPFLAGR DKVVACAKHF VGDGGTDRGI NEGNTISSYE DLERIHIPPY 241 IDCISQGVCT VMASYSKWNG SHLHSSHFLL TEVLKGKLGF KGFVISDSEG IDRFFHPHGS 301 NYDQSILAAI NAGIDMVMVP FRYQLFLDHL KYLVESGNIP MTRIDDAVER ILRVKFVSGA 361 FENPLSDRSL LDTVGCHQHR ELAREAVRKS LVLLKNGKDV TKPFLPLDRK AKRILVAGKH 421 ADDLGFQCGG WTKTWEGMGG RITIGTTILE AIKDAVGGET ELVYEENPSP DTFASQDFSY 481 CIVVVGEPPY CESGGDSQDL RIPLGGEELI SLVADRVPTL VILISGRPLH IEPSILEKMD 541 AFVAAWLPGT EGTGITDVIF GDFEFHGTLP MTWFKSVDQL PLHQEQNSYE PLFPFGYGLT 601 SKNKVI- AGS-2 (8693 8797,8877 9059,9811 9996,10825 10898) SCR (e 1.000 d 0.998 a 0.990,e 1.000 d 0.921 a 0.000,e 1.000 d 1.000 a 0.999,e 1.000) Exon 1 8693 8797 ( 105 n); score: 1.000 Intron 1 8798 8876 ( 79 n); Pd: 0.998 Pa: 0.990 Exon 2 8877 9059 ( 183 n); score: 1.000 Intron 2 9060 9810 ( 751 n); Pd: 0.921 Pa: 0.000 Exon 3 9811 9996 ( 186 n); score: 1.000 Intron 3 9997 10824 ( 828 n); Pd: 1.000 Pa: 0.999 Exon 4 10825 10898 ( 74 n); score: 1.000 PGS (8693 8797,8877 9059,9811 9996,10825 10898) SGN-E256880+ 3-phase translation of AGS-2 (+strand): . . . . . . 8693 GGCTTTGTTATTTCTGATTCCGAAGGAATTGACCGATTTTTCCATCCTCATGGATCTAAC G F V I S D S E G I D R F F H P H G S N A L L F L I P K E L T D F S I L M D L T L C Y F - F R R N - P I F P S S W I - . . . . . : . 8753 TATGACCAAAGTATTTTGGCAGCAATCAATGCAGGGATTGACATG : GTGATGGTTCCTTTT Y D Q S I L A A I N A G I D M : V M V P F M T K V F W Q Q S M Q G L T W : - W F L F L - P K Y F G S N Q C R D - H : G D G S F . . . . . . 8892 CGGTATCAATTATTTCTCGATCATTTGAAATATCTTGTGGAATCTGGGAATATTCCAATG R Y Q L F L D H L K Y L V E S G N I P M G I N Y F S I I - N I L W N L G I F Q - S V S I I S R S F E I S C G I W E Y S N . . . . . . 8952 ACCAGAATTGATGATGCTGTTGAAAGGATCCTGAGAGTTAAGTTTGTTTCCGGAGCTTTT T R I D D A V E R I L R V K F V S G A F P E L M M L L K G S - E L S L F P E L L D Q N - - C C - K D P E S - V C F R S F . . . . . : . 9012 GAGAACCCTCTGAGTGATAGGTCATTGTTGGATACCGTTGGTTGTCAT : CACGTGAAGCAG E N P L S D R S L L D T V G C H : H V K Q R T L - V I G H C W I P L V V I : T - S S - E P S E - - V I V G Y R W L S : S R E A . . . . . . 9823 TTCGCAAATCACTGGTTCTTCTAAAGAATGGGAAGGATGTAACAAAACCATTTCTTCCGC F A N H W F F - R M G R M - Q N H F F R S Q I T G S S K E W E G C N K T I S S A V R K S L V L L K N G K D V T K P F L P . . . . . . 9883 TAGATAGGAAGGCAAAGAGAATTCTTGTAGCAGGAAAACATGCTGACGACCTTGGATTCC - I G R Q R E F L - Q E N M L T T L D S R - E G K E N S C S R K T C - R P W I P L D R K A K R I L V A G K H A D D L G F . . . . . . : 9943 AATGTGGAGGGTGGACTAAAACATGGGAAGGAATGGGCGGAAGAATCACGATTG : GTACAA N V E G G L K H G K E W A E E S R L : V Q M W R V D - N M G R N G R K N H D W : Y N Q C G G W T K T W E G M G G R I T I : G T . . . . . . 10831 CTATTCTGGAAGCTATTAAAGATGCTGTTGGAGGGGAAACAGAACTGGTATATGAAGAAA L F W K L L K M L L E G K Q N W Y M K K Y S G S Y - R C C W R G N R T G I - R K T I L E A I K D A V G G E T E L V Y E E . 10891 ATCCTTCA I L S F N P S Maximal non-overlapping open reading frames (>= 64 codons): >C06HBa0054K13.1-4+_PGL-2_AGS-2_PPS_1 (8693 8797,8877 9059,9811 9846) (frame '1'; 321 bp, 107 residues) 1 GFVISDSEGI DRFFHPHGSN YDQSILAAIN AGIDMVMVPF RYQLFLDHLK YLVESGNIPM 61 TRIDDAVERI LRVKFVSGAF ENPLSDRSLL DTVGCHHVKQ FANHWFF- AGS-3 (11150 11487,12234 12264) SCR (e 0.991 d 0.000 a 0.890,e 0.774) Exon 1 11150 11487 ( 338 n); score: 0.991 Intron 1 11488 12233 ( 746 n); Pd: 0.000 Pa: 0.890 Exon 2 12234 12264 ( 31 n); score: 0.774 PGS (11150 11487,12234 12264) SGN-E224798- 3-phase translation of AGS-3 (+strand): . . . . . . 11150 TGGTATCACTGATGTCATATTCGGAGATTTTGAATTCCATGGAACCCTCCCTATGACATG W Y H - C H I R R F - I P W N P P Y D M G I T D V I F G D F E F H G T L P M T W V S L M S Y S E I L N S M E P S L - H . . . . . . 11210 GTTTAAGAGTGTAGATCAATTACCCCTGCATCAAGAACAGAACTCCTATGAACCTCTCTT V - E C R S I T P A S R T E L L - T S L F K S V D Q L P L H Q E Q N S Y E P L F G L R V - I N Y P C I K N R T P M N L S . . . . . . 11270 TCCATTCGGCTACGGATTAACAAGTAAAAACAAGGTGATCTAGACGAGATGTGTCGAAGA S I R L R I N K - K Q G D L D E M C R R P F G Y G L T S K N K V I - T R C V E E F H S A T D - Q V K T R - S R R D V S K . . . . . . 11330 AAGGTTTAGTGAAATAGACATGTCTATAAAGATGCGGACTATCAGAAAGACTGTATGAAG K V - - N R H V Y K D A D Y Q K D C M K R F S E I D M S I K M R T I R K T V - S K G L V K - T C L - R C G L S E R L Y E . . . . . . 11390 CTTTATGCAACCTCTTGTGTACTTTGTACCATTTGGTCTCTGGCATATGATGTTACATTA L Y A T S C V L C T I W S L A Y D V T L F M Q P L V Y F V P F G L W H M M L H - A L C N L L C T L Y H L V S G I - C Y I . . . . : . . 11450 AGTCCAAATAATTATATATTATGTACTATTATTACCAT : AAGGAAAAAAAAAAAGAAGAAA S P N N Y I L C T I I T I : R K K K K K K V Q I I I Y Y V L L L P : - G K K K R R K K S K - L Y I M Y Y Y Y H : K E K K K E E . 12256 AATAATGAA N N E I M K - - Maximal non-overlapping open reading frames (>= 64 codons): none AGS-4 (11185 11489,12234 12260) SCR (e 0.954 d 0.000 a 0.890,e 0.815) Exon 1 11185 11489 ( 305 n); score: 0.954 Intron 1 11490 12233 ( 744 n); Pd: 0.000 Pa: 0.890 Exon 2 12234 12260 ( 27 n); score: 0.815 PGS (11185 11489,12234 12260) SGN-E229036- PGS (11291 11489,12234 12260) SGN-E228748- 3-phase translation of AGS-4 (+strand): . . . . . . 11185 TCCATGGAACCCTCCCTATGACATGGTTTAAGAGTGTAGATCAATTACCCCTGCATCAAG S M E P S L - H G L R V - I N Y P C I K P W N P P Y D M V - E C R S I T P A S R H G T L P M T W F K S V D Q L P L H Q . . . . . . 11245 AACAGAACTCCTATGAACCTCTCTTTCCATTCGGCTACGGATTAACAAGTAAAAACAAGG N R T P M N L S F H S A T D - Q V K T R T E L L - T S L S I R L R I N K - K Q G E Q N S Y E P L F P F G Y G L T S K N K . . . . . . 11305 TGATCTAGACGAGATGTGTCGAAGAAAGGTTTAGTGAAATAGACATGTCTATAAAGATGC - S R R D V S K K G L V K - T C L - R C D L D E M C R R K V - - N R H V Y K D A V I - T R C V E E R F S E I D M S I K M . . . . . . 11365 GGACTATCAGAAAGACTGTATGAAGCTTTATGCAACCTCTTGTGTACTTTGTACCATTTG G L S E R L Y E A L C N L L C T L Y H L D Y Q K D C M K L Y A T S C V L C T I W R T I R K T V - S F M Q P L V Y F V P F . . . . . . 11425 GTCTCTGGCATATGATGTTACATTAAGTCCAAATAATTATATATTATGTACTATTATTAC V S G I - C Y I K S K - L Y I M Y Y Y Y S L A Y D V T L S P N N Y I L C T I I T G L W H M M L H - V Q I I I Y Y V L L L . : . . . 11485 CATAT : AAGGAAAAAAAAAAAGAAGAAAAATAA H I : R K K K K K K N I : - G K K K R R K I P Y : K E K K K E E K - Maximal non-overlapping open reading frames (>= 64 codons): none ... finished at: Mon Aug 28 22:10:15 2006 ________________________________________________________________________________ Sequence 5: C06HBa0054K13.1-5, from 1 to 5340, both strands analyzed. ... started at: Mon Aug 28 22:10:15 2006 EST library file: /tmp/cxgn-bacpublish-resources-LF1h7Z/sgn_ests; matching gDNA +strand ... ... found all matches, elapsed seconds = 3 ... matches indexed, elapsed seconds = 3 HitsTableSize = 3 EST library file: /tmp/cxgn-bacpublish-resources-LF1h7Z/sgn_ests; matching gDNA -strand ... ... found all matches, elapsed seconds = 3 ... matches indexed, elapsed seconds = 3 HitsTableSize = 2 ******************************************************************************** EST sequence 2 +strand 371 n (File: SGN-E204814+) 1 ATGAAGCAGG GCACGCAGTA GTTGGGACTG CTGTTGCAAA TCTTCTTTCC GGGCAGCCAC 61 GGGTTGAGAA GCTGAGCATA TTGCCAAGAT CTGGAGGGGC TTTAGGATTT ACTTATATTC 121 CTCCAACCAA TGAGGACAGA TATCTGCTCT TTGTTGATGA ATTGCGTGGG AGGTTGGTCA 181 CTCTTCTTGG TGGACGTGCT GCGGAAGAAG TATTGTACTC TGGACGTGTA TCTACTGGTG 241 CTCTTGATGA TATACGCAGA GCTACAGACA TGGCCTACAA GGCAGTGGCT GAATATGGTC 301 TTAGTCAGAC CATTGGCCCT ATCTCAGTGG CAACACTTTC TGGAGGTGGG ATGGATGATG 361 GTGGATCCAT G Predicted gene structure (within gDNA segment 1 to 2740): Exon 1 443 510 ( 68 n); cDNA 1 68 ( 68 n); score: 1.000 Intron 1 511 1827 (1317 n); Pd: 0.996 (s: 1.00), Pa: 0.000 (s: 1.00) Exon 2 1828 2130 ( 303 n); cDNA 69 371 ( 303 n); score: 1.000 MATCH C06HBa0054K13.1-5+ SGN-E204814+ 1.000 371 1.000 C PGS_C06HBa0054K13.1-5+_SGN-E204814+ (443 510,1828 2130) Alignment (genomic DNA sequence = upper lines): ATGAAGCAGG GCACGCAGTA GTTGGGACTG CTGTTGCAAA TCTTCTTTCC GGGCAGCCAC 502 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGAAGCAGG GCACGCAGTA GTTGGGACTG CTGTTGCAAA TCTTCTTTCC GGGCAGCCAC 60 GGGTTGAGGT GATCATTATT ATCACTTTCT CTGAGAAATT CTTGTTCTTC CTGATTTACT 562 |||||||| GGGTTGAG.. .......... .......... .......... .......... .......... 68 GCAAGTTCGT GTTATTTGAT TTGTGTTCCA CTGGATAACA TCTGACATCT AAAAAGAATT 622 .......... .......... .......... .......... .......... .......... 68 GATATGATAG AACTACTCTA GAAATAGAAT TTCTTAAGTT TGTCATGTTT CAGAACAGGA 682 .......... .......... .......... .......... .......... .......... 68 AAATCAAATG TCTGCATGTC TTGAACAGCC TGGTTTTGAC CTTTTCCAGG GACATTATGC 742 .......... .......... .......... .......... .......... .......... 68 ATCAACAAAA CCACTCCCCT GCATTTGGTA TGGGACCTCT AATAGTGTTT AAATTGGGTT 802 .......... .......... .......... .......... .......... .......... 68 CACAGTTTGT TCTTGGGGTG ATGGATTATG GAGAAATATT TGGATCATTG ATCAATGCAG 862 .......... .......... .......... .......... .......... .......... 68 TCATCTGTGA CCTATCCTTC TCAATGTAGT AGCACTGTTA TTGAAGCAGA ATAAAATAAA 922 .......... .......... .......... .......... .......... .......... 68 ATATAAAAAA TAGAAAATGG AGAAGTAGTG GCTTATTGGT GTCCTGTTGA TTGATAAGAA 982 .......... .......... .......... .......... .......... .......... 68 TGTCCAAAAT GGAAAAATGC CTGTGTTTGG ATCTAATACT TTATTCTAAT AAAAAATGGG 1042 .......... .......... .......... .......... .......... .......... 68 TGTCTGGATT TGATAAGGAA TAGGAAATGA CTTGGTTCTG ATGTCAGACT TGGGTACAAC 1102 .......... .......... .......... .......... .......... .......... 68 TCAAATACGC TACTGATTGT TTGACCTTTA TTTTCCCTAG AAAGGCAACT CTGGAAGAAT 1162 .......... .......... .......... .......... .......... .......... 68 GTTATATGTA CATAATGACC TCACTTATCA GGAAAAAACA ATATAAGGTT CTTTCTCCCT 1222 .......... .......... .......... .......... .......... .......... 68 ATCTCTCTCT TTTCTGGTGT TCTCCAGATT CATGGAAATA TATTTTCTGG GTAAAAGGGT 1282 .......... .......... .......... .......... .......... .......... 68 TGTATGCCTT CCTTAATGTT GTTTCTCCTC AACAAAAAAA GAAGAAATAG TATCATAGTT 1342 .......... .......... .......... .......... .......... .......... 68 CTATATTTCT GGCTTGAGTA GGTGAGGTAT TTTATTCCAT GATTTTGGTG TTGGTAAATA 1402 .......... .......... .......... .......... .......... .......... 68 GAGAGCGAGC GACTCACTCT CCAACCCCCC AACTTTGTTT TTCTCAATGT GAAAGTTGTT 1462 .......... .......... .......... .......... .......... .......... 68 ACTAATGAGA AATCTCAAGT GATTTTCCTT GTTATTTCCC CTTCCTCTCT TTCTTAATTT 1522 .......... .......... .......... .......... .......... .......... 68 TGACGGCACC AGTTCATTTC TTTTACCTCC CCCAACTATC TGTTTCAAAT GAACCATACC 1582 .......... .......... .......... .......... .......... .......... 68 AACATGGTTC TGGAAGTGGT CTTCCTGCAA GTTCTCTCAA TATCCTGATC CTTTTCATGG 1642 .......... .......... .......... .......... .......... .......... 68 GAAAGTTTGC AAGTGAGGTC AGCCATTTCT ATATTGGTAC AGATGCTTAA AGTCTTTTGC 1702 .......... .......... .......... .......... .......... .......... 68 TAAAATCAGT ACTTTGCTTC TACTCAACCT TGCTTTTCTC AAACTATGAT TGTTGCTTTT 1762 .......... .......... .......... .......... .......... .......... 68 GTTGTACATA ATTGGGATTA GTGCAGTTAT GGTATTAATA ACAGTTCTCT TTTTTCGCTA 1822 .......... .......... .......... .......... .......... .......... 68 ACCAGAAGCT GAGCATATTG CCAAGATCTG GAGGGGCTTT AGGATTTACT TATATTCCTC 1882 ||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .....AAGCT GAGCATATTG CCAAGATCTG GAGGGGCTTT AGGATTTACT TATATTCCTC 123 CAACCAATGA GGACAGATAT CTGCTCTTTG TTGATGAATT GCGTGGGAGG TTGGTCACTC 1942 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAACCAATGA GGACAGATAT CTGCTCTTTG TTGATGAATT GCGTGGGAGG TTGGTCACTC 183 TTCTTGGTGG ACGTGCTGCG GAAGAAGTAT TGTACTCTGG ACGTGTATCT ACTGGTGCTC 2002 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCTTGGTGG ACGTGCTGCG GAAGAAGTAT TGTACTCTGG ACGTGTATCT ACTGGTGCTC 243 TTGATGATAT ACGCAGAGCT ACAGACATGG CCTACAAGGC AGTGGCTGAA TATGGTCTTA 2062 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGATGATAT ACGCAGAGCT ACAGACATGG CCTACAAGGC AGTGGCTGAA TATGGTCTTA 303 GTCAGACCAT TGGCCCTATC TCAGTGGCAA CACTTTCTGG AGGTGGGATG GATGATGGTG 2122 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTCAGACCAT TGGCCCTATC TCAGTGGCAA CACTTTCTGG AGGTGGGATG GATGATGGTG 363 GATCCATG 2130 |||||||| GATCCATG 371 hqPGS_C06HBa0054K13.1-5+_SGN-E204814+ (443 510,1828 2130) ******************************************************************************** EST sequence 3 +strand 371 n (File: SGN-E281960+) 1 TGAATATGGT CTTAGTCAGA CCATTGGCCC TATCTCAGTG GCAACACTTT CTGGAGGTGG 61 GATGGATGAT GGTGGATCCA TGTCCTGGGG AAGGGACCAG GGGCATCTTG TTGATCTTGT 121 TCAAAGAGAG GTCAAGGCTT TACTGCAGTC TGCACTTGAT ATTGCACTCT GCGTTGTACG 181 TGCTAATCCC AAAGTTCTTG AGGGGTTGGG AGCTCAATTG GAAGAGAATG AGAAAGTAGA 241 AAGTGAGCAA CTACAAGAAT GGTTGAGCAT GGTCGTTGCA CCAGCAGAAC TTAATTTTTT 301 CATAAAGGGC AAAGAATGAT CTTTACTTCC ACTGCAAGCA GGCTCTGGAT GACAGAAAGT 361 GCAAGCTTAA C Predicted gene structure (within gDNA segment 1449 to 3648): Exon 1 2049 2148 ( 100 n); cDNA 1 100 ( 100 n); score: 1.000 Intron 1 2149 2282 ( 134 n); Pd: 0.987 (s: 1.00), Pa: 0.710 (s: 1.00) Exon 2 2283 2406 ( 124 n); cDNA 101 224 ( 124 n); score: 0.992 Intron 2 2407 2891 ( 485 n); Pd: 0.975 (s: 1.00), Pa: 0.998 (s: 0.98) Exon 3 2892 3038 ( 147 n); cDNA 225 371 ( 147 n); score: 0.986 MATCH C06HBa0054K13.1-5+ SGN-E281960+ 0.992 371 1.000 C PGS_C06HBa0054K13.1-5+_SGN-E281960+ (2049 2148,2283 2406,2892 3038) Alignment (genomic DNA sequence = upper lines): TGAATATGGT CTTAGTCAGA CCATTGGCCC TATCTCAGTG GCAACACTTT CTGGAGGTGG 2108 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAATATGGT CTTAGTCAGA CCATTGGCCC TATCTCAGTG GCAACACTTT CTGGAGGTGG 60 GATGGATGAT GGTGGATCCA TGTCCTGGGG AAGGGACCAG GTCTTTCCGC TTTTGCCCCT 2168 |||||||||| |||||||||| |||||||||| |||||||||| GATGGATGAT GGTGGATCCA TGTCCTGGGG AAGGGACCAG .......... .......... 100 TTCTTGTTTT CTGAATTCTC TGCTTTTTTC TGCTCTAACA TTTAATCCCA ACTTATGTTT 2228 .......... .......... .......... .......... .......... .......... 100 CTAACTTGAA AATACCACAT CTTTAGCAGA ACTGAAAGTA AAATTATTCC ACAGGGGCAT 2288 |||||| .......... .......... .......... .......... .......... ....GGGCAT 106 CTTGTTGATC TTGTTCAAAG AGAGGTCAAG GCTTTACTGC AGTCTGCACT TGATATTGCA 2348 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTGTTGATC TTGTTCAAAG AGAGGTCAAG GCTTTACTGC AGTCTGCACT TGATATTGCA 166 CTCTGTGTTG TACGTGCTAA TCCCAAAGTT CTTGAGGGGT TGGGAGCTCA ATTGGAAGGT 2408 ||||| |||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||| CTCTGCGTTG TACGTGCTAA TCCCAAAGTT CTTGAGGGGT TGGGAGCTCA ATTGGAAG.. 224 AATATGTTCA ATGTCACTTT AGTAGTCAAA TTTTTGGTAT TCTTTAGTAT TGCTTTCTTT 2468 .......... .......... .......... .......... .......... .......... 224 CAATTAACTT CACAAGGTAA TGATTTTGCA TTAAAGATAA ATAGAAGAAT CTCATTTTAT 2528 .......... .......... .......... .......... .......... .......... 224 TTTTAATATG TCATATTTTT AATATGTTAA TTAATAACAA AGATCTCTTT ATGATATGTG 2588 .......... .......... .......... .......... .......... .......... 224 ATGTGTCTTT TCCTTTCAAT CTCTTTACCT TTTTCTTTGT GGAAGGTGGA TACTCTTTCT 2648 .......... .......... .......... .......... .......... .......... 224 ATTCCATTTT ATGACATTGT TTTGGTTTAG TATGTGTTAA AAGTATGGCA CTCTTTTATG 2708 .......... .......... .......... .......... .......... .......... 224 TTTGGGAACT CTCTAATTCT ATACTTCCTA TTGTACTGTC AATGTGATGC TCTTTTCACT 2768 .......... .......... .......... .......... .......... .......... 224 ACAAAAATGA CATGTTTAAG ACCACAAGTT TTTATGGGTA CTATATGCTC AGACCGACAT 2828 .......... .......... .......... .......... .......... .......... 224 ATAAAATGAA ACTGGAGTTT TATATTTGGT ACTCTTTTAT GGATTGATAT TTCTTCCTCT 2888 .......... .......... .......... .......... .......... .......... 224 CAGAGAATGA GAAAGTAGAA GGTGAGCAAC TACAAGAATG GTTGAGCATG GTCGTTGCAC 2948 ||||||| |||||||||| ||||||||| |||||||||| |||||||||| |||||||||| ...AGAATGA GAAAGTAGAA AGTGAGCAAC TACAAGAATG GTTGAGCATG GTCGTTGCAC 281 CAGCAGAACT TAATTTTTTC ATAAAGGGCA AAGAAGGATC TTTACTTCCA CTGCAAGCAG 3008 |||||||||| |||||||||| |||||||||| ||||| |||| |||||||||| |||||||||| CAGCAGAACT TAATTTTTTC ATAAAGGGCA AAGAATGATC TTTACTTCCA CTGCAAGCAG 341 GCTCTGGATG ACAGAAAGTG CAAGCTTAAC 3038 |||||||||| |||||||||| |||||||||| GCTCTGGATG ACAGAAAGTG CAAGCTTAAC 371 hqPGS_C06HBa0054K13.1-5+_SGN-E281960+ (2049 2148,2283 2406,2892 3038) ******************************************************************************** EST sequence 1 +strand 724 n (File: SGN-E340881+) 1 TAATCCCAAA GTTCTTGAGG GGTTGGGAGC TCAATTGGAA GAGAATGAGA AAGTAGAAGG 61 TGAGCAACTA CAAGAATGGT TGAGCATGGT CGTTGCACCA GCAGAACTTA ATTTTTTCAT 121 AAAGGGCAAA GAAGGATCTT TACTTCCACT GCAAGCAGGC TCTGGATGAC AGAAAGTGCA 181 AGCTTAACCC AGTCAACAGA GTACAAAAAC GAATTTCGAA TAAGGATTTC CACGCCTTCA 241 TCTGTGCTCT CTAGGGAAAC AAAGCTATAT TCCTGAACCA GATGGGCATC ACTTGCTGGC 301 ATCCAGACAG CGTGATTTTG CATGTGTTAG TAAGGTAAAT TGACAGCTAC TTAACTCCTA 361 CAAACACCAT TGTTATATAC CACGATCACA GATTGTTAAC TCGAAGAGAA GGCATGCGCA 421 AAAGATCTAG CCAAGAGTTT CTTGGTTCTC TAGAGGTGAA ATGAAAATAG GCTCGTGATC 481 AGAGTGATGT CTGTTGGTAT TTTCTTCTAC ATCACTTGTA CATGTGCCCA ATTATTCTTA 541 GTAATTACAC AAGAATCAAT ACCTTAATAT TGTAATATAC ATCTGTACTG CAGCTTACAA 601 AGAACTAATC CATGTCTAAT GTTGTGGGAG AAAGTGTGAA ACTGTGTATA CAATGTAATC 661 TTTCTGATTA TGAGACAAAG TTTCAGTAGG TTGCCATAAA TCTTGACTTG TGTAAAAAAA 721 AAAA Predicted gene structure (within gDNA segment 1766 to 4409): Exon 1 2366 2406 ( 41 n); cDNA 1 41 ( 41 n); score: 1.000 Intron 1 2407 2891 ( 485 n); Pd: 0.975 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 2 2892 3573 ( 682 n); cDNA 42 723 ( 682 n); score: 0.990 MATCH C06HBa0054K13.1-5+ SGN-E340881+ 0.990 723 0.999 C PGS_C06HBa0054K13.1-5+_SGN-E340881+ (2366 2406,2892 3573) Alignment (genomic DNA sequence = upper lines): TAATCCCAAA GTTCTTGAGG GGTTGGGAGC TCAATTGGAA GGTAATATGT TCAATGTCAC 2425 |||||||||| |||||||||| |||||||||| |||||||||| | TAATCCCAAA GTTCTTGAGG GGTTGGGAGC TCAATTGGAA G......... .......... 41 TTTAGTAGTC AAATTTTTGG TATTCTTTAG TATTGCTTTC TTTCAATTAA CTTCACAAGG 2485 .......... .......... .......... .......... .......... .......... 41 TAATGATTTT GCATTAAAGA TAAATAGAAG AATCTCATTT TATTTTTAAT ATGTCATATT 2545 .......... .......... .......... .......... .......... .......... 41 TTTAATATGT TAATTAATAA CAAAGATCTC TTTATGATAT GTGATGTGTC TTTTCCTTTC 2605 .......... .......... .......... .......... .......... .......... 41 AATCTCTTTA CCTTTTTCTT TGTGGAAGGT GGATACTCTT TCTATTCCAT TTTATGACAT 2665 .......... .......... .......... .......... .......... .......... 41 TGTTTTGGTT TAGTATGTGT TAAAAGTATG GCACTCTTTT ATGTTTGGGA ACTCTCTAAT 2725 .......... .......... .......... .......... .......... .......... 41 TCTATACTTC CTATTGTACT GTCAATGTGA TGCTCTTTTC ACTACAAAAA TGACATGTTT 2785 .......... .......... .......... .......... .......... .......... 41 AAGACCACAA GTTTTTATGG GTACTATATG CTCAGACCGA CATATAAAAT GAAACTGGAG 2845 .......... .......... .......... .......... .......... .......... 41 TTTTATATTT GGTACTCTTT TATGGATTGA TATTTCTTCC TCTCAGAGAA TGAGAAAGTA 2905 |||| |||||||||| .......... .......... .......... .......... ......AGAA TGAGAAAGTA 55 GAAGGTGAGC AACTACAAGA ATGGTTGAGC ATGGTCGTTG CACCAGCAGA ACTTAATTTT 2965 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAGGTGAGC AACTACAAGA ATGGTTGAGC ATGGTCGTTG CACCAGCAGA ACTTAATTTT 115 TTCATAAAGG GCAAAGAAGG ATCTTTACTT CCACTGCAAG CAGGCTCTGG ATGACAGAAA 3025 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCATAAAGG GCAAAGAAGG ATCTTTACTT CCACTGCAAG CAGGCTCTGG ATGACAGAAA 175 GTGCAAGCTT AACCCAGTCA ACAGAGTACA AAAACGAATT TCGAATAAGG ATTTCCACGC 3085 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGCAAGCTT AACCCAGTCA ACAGAGTACA AAAACGAATT TCGAATAAGG ATTTCCACGC 235 CTTCATCTGT GCTCTCTAGG GAAACAAAGC TATATTCCTG AACCAGATGG GCATCACTTG 3145 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTCATCTGT GCTCTCTAGG GAAACAAAGC TATATTCCTG AACCAGATGG GCATCACTTG 295 CTGGCATCCA GACAGCGTGA TTTTGCATGT GTTAGTAAGG TAAATTGACA GCTACTTAAC 3205 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGGCATCCA GACAGCGTGA TTTTGCATGT GTTAGTAAGG TAAATTGACA GCTACTTAAC 355 TCCTACAAAC ACCATTGTTA TATACCACGA TCACAGATTG TTAACTCGAA GAGAAGGCAT 3265 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCCTACAAAC ACCATTGTTA TATACCACGA TCACAGATTG TTAACTCGAA GAGAAGGCAT 415 GCGCAAAAGA TCTAGCCAAG AGTTTCTTGG TTCTCTAGAG GTGAAATGAA AATAGGCTCG 3325 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCGCAAAAGA TCTAGCCAAG AGTTTCTTGG TTCTCTAGAG GTGAAATGAA AATAGGCTCG 475 TGATCAGAGT GATGTCTGTT GGTATTTTCT TCTACATCAC TTGTACATGT GCCCAATTAT 3385 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGATCAGAGT GATGTCTGTT GGTATTTTCT TCTACATCAC TTGTACATGT GCCCAATTAT 535 TCTTAGTAAT TACACAAGAA TCAATACCTT AATATTGTAA TATACATCTG TACTGCAGCT 3445 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTTAGTAAT TACACAAGAA TCAATACCTT AATATTGTAA TATACATCTG TACTGCAGCT 595 TACAAAGAAC TAATCCATGT CTAATGTTGT GGGAGAAGGT GTGAAACTGT GTATACAATG 3505 |||||||||| |||||||||| |||||||||| ||||||| || |||||||||| |||||||||| TACAAAGAAC TAATCCATGT CTAATGTTGT GGGAGAAAGT GTGAAACTGT GTATACAATG 655 TAATCTTTCT GATTATGAGA CAAAGTTTCA GTAGGTTGCC ATAATCTTTG ACTTGTGTAA 3565 |||||||||| |||||||||| |||||||||| |||||||||| |||| ||| |||||||||| TAATCTTTCT GATTATGAGA CAAAGTTTCA GTAGGTTGCC ATAAATCTTG ACTTGTGTAA 715 AATTACAA 3573 || | || AAAAAAAA 723 hqPGS_C06HBa0054K13.1-5+_SGN-E340881+ (2366 2406,2892 3573) ******************************************************************************** EST sequence 5 -strand 460 n (File: SGN-E220268-) 1 GTGTTAGTAA GGTAAATTGA CAGCACTTAG ACTCCTACAA ACACCATTGT TATATACCAC 61 GATCACAGAT TGTTAACTCG AAGAGAAGGC ATGCGCAAAA GATCTAGCCA AGAGTTTCTT 121 GGTTCTCTAG AGGTGAAATG AAAATAGGCT CGTGATCAGA GTGATGTCTG TTGGTATTTT 181 CTTCTACATC ACTTGTACAT GTGCCCAATT ATTCTTAGTA ATTACACAAG AATCAATACC 241 TTAATATTGT AATATACATC TGTACTGCAG CTTACAAAGA ACTAATCCAT GTCTAATGTT 301 GTGGGAGAAG GTGTGAAACT GTGTATACAA TGTAATCTTT CTGATTATGA GACAAAGTTT 361 CAGTAGGTTG CCATAATCTT TGACTTGTGT AAAATTACAA GTATTGGATG AGGTAATAGT 421 GACAATTCCT TGTGCTTGTG GTTAAAATAA AAAAAAAAAA Predicted gene structure (within gDNA segment 2564 to 4368): Exon 1 3174 3618 ( 445 n); cDNA 1 445 ( 445 n); score: 0.992 PPA cDNA 446 460 MATCH C06HBa0054K13.1-5+ SGN-E220268- 0.992 445 0.967 C PGS_C06HBa0054K13.1-5+_SGN-E220268- (3174 3618) Alignment (genomic DNA sequence = upper lines): GTGTTAGTAA GGTAAATTGA CAGCTACTTA -ACTCCTACA AACACCATTG TTATATACCA 3232 |||||||||| |||||||||| |||| ||||| ||||||||| |||||||||| |||||||||| GTGTTAGTAA GGTAAATTGA CAGC-ACTTA GACTCCTACA AACACCATTG TTATATACCA 59 CGATCACAGA TTGTTAACTC GAAGAGAAGG CATGCGCAAA AGATCTAGCC AAGAGTTTCT 3292 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGATCACAGA TTGTTAACTC GAAGAGAAGG CATGCGCAAA AGATCTAGCC AAGAGTTTCT 119 TGGTTCTCTA GAGGTGAAAT GAAAATAGGC TCGTGATCAG AGTGATGTCT GTTGGTATTT 3352 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGTTCTCTA GAGGTGAAAT GAAAATAGGC TCGTGATCAG AGTGATGTCT GTTGGTATTT 179 TCTTCTACAT CACTTGTACA TGTGCCCAAT TATTCTTAGT AATTACACAA GAATCAATAC 3412 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTTCTACAT CACTTGTACA TGTGCCCAAT TATTCTTAGT AATTACACAA GAATCAATAC 239 CTTAATATTG TAATATACAT CTGTACTGCA GCTTACAAAG AACTAATCCA TGTCTAATGT 3472 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTAATATTG TAATATACAT CTGTACTGCA GCTTACAAAG AACTAATCCA TGTCTAATGT 299 TGTGGGAGAA GGTGTGAAAC TGTGTATACA ATGTAATCTT TCTGATTATG AGACAAAGTT 3532 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTGGGAGAA GGTGTGAAAC TGTGTATACA ATGTAATCTT TCTGATTATG AGACAAAGTT 359 TCAGTAGGTT GCCATAATCT TTGACTTGTG TAAAATTACA AGTATTGGAT GAGGTAATAG 3592 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCAGTAGGTT GCCATAATCT TTGACTTGTG TAAAATTACA AGTATTGGAT GAGGTAATAG 419 TGACAATTCC TTGTGCTTGT GGTTAA 3618 |||||||||| |||||||||| |||||| TGACAATTCC TTGTGCTTGT GGTTAA 445 hqPGS_C06HBa0054K13.1-5+_SGN-E220268- (3174 3618) ******************************************************************************** EST sequence 4 -strand 347 n (File: SGN-E220170-) 1 TTTCTTGGTT CTCTAAAGGT GAAATGAAAA TAGGCTCGTG ATCAGAGTAA TGTCTGTTGG 61 TAATTTTCTT CTACATCACT TGAACATGTG CCCAATTATT CTTAGTAATT ACACAAGAAT 121 CAATACCTTA ATATTGTAAT ATACATCTGT ACTGCAGCTT ACAAAGAACT AATCCATGTC 181 TAATGTTGTG GGAGAAGGTG TGAAACTGTG TATACAATGT AATCTTTCTG ATTATGAGAC 241 AAAGTTTCAG TAGGTTGCCA TAATCTTTGA CTTGTGTAAA ATTACAAGTA TTGGATGAGG 301 TAATAGTAAC AATTCCTTGT GCATGTGGTT AAAAAAAAAA AAAAAAA Predicted gene structure (within gDNA segment 2534 to 4593): Exon 1 3288 3618 ( 331 n); cDNA 1 332 ( 332 n); score: 0.977 PPA cDNA 333 347 MATCH C06HBa0054K13.1-5+ SGN-E220170- 0.977 331 0.954 C PGS_C06HBa0054K13.1-5+_SGN-E220170- (3288 3618) Alignment (genomic DNA sequence = upper lines): TTTCTTGGTT CTCTAGAGGT GAAATGAAAA TAGGCTCGTG ATCAGAGTGA TGTCTGTTGG 3347 |||||||||| ||||| |||| |||||||||| |||||||||| |||||||| | |||||||||| TTTCTTGGTT CTCTAAAGGT GAAATGAAAA TAGGCTCGTG ATCAGAGTAA TGTCTGTTGG 60 T-ATTTTCTT CTACATCACT TGTACATGTG CCCAATTATT CTTAGTAATT ACACAAGAAT 3406 | |||||||| |||||||||| || ||||||| |||||||||| |||||||||| |||||||||| TAATTTTCTT CTACATCACT TGAACATGTG CCCAATTATT CTTAGTAATT ACACAAGAAT 120 CAATACCTTA ATATTGTAAT ATACATCTGT ACTGCAGCTT ACAAAGAACT AATCCATGTC 3466 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAATACCTTA ATATTGTAAT ATACATCTGT ACTGCAGCTT ACAAAGAACT AATCCATGTC 180 TAATGTTGTG GGAGAAGGTG TGAAACTGTG TATACAATGT AATCTTTCTG ATTATGAGAC 3526 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAATGTTGTG GGAGAAGGTG TGAAACTGTG TATACAATGT AATCTTTCTG ATTATGAGAC 240 AAAGTTTCAG TAGGTTGCCA TAATCTTTGA CTTGTGTAAA ATTACAAGTA TTGGATGAGG 3586 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAGTTTCAG TAGGTTGCCA TAATCTTTGA CTTGTGTAAA ATTACAAGTA TTGGATGAGG 300 TAATAGTGAC AATTCCTTGT GCTTGTGGTT AA 3618 ||||||| || |||||||||| || ||||||| || TAATAGTAAC AATTCCTTGT GCATGTGGTT AA 332 hqPGS_C06HBa0054K13.1-5+_SGN-E220170- (3288 3618) Total number of EST alignments reported: 5 ________________________________________________________________________________ Predicted gene locations (1) in segment 1 to 5340: PGL 1 (+ strand): 443 3618 AGS-1 (443 510,1828 2148,2283 2406,2892 3618) SCR (e 1.000 d 0.996 a 0.000,e 1.000 d 0.987 a 0.710,e 0.992 d 0.975 a 0.998,e 0.990) Exon 1 443 510 ( 68 n); score: 1.000 Intron 1 511 1827 (1317 n); Pd: 0.996 Pa: 0.000 Exon 2 1828 2148 ( 321 n); score: 1.000 Intron 2 2149 2282 ( 134 n); Pd: 0.987 Pa: 0.710 Exon 3 2283 2406 ( 124 n); score: 0.992 Intron 3 2407 2891 ( 485 n); Pd: 0.975 Pa: 0.998 Exon 4 2892 3618 ( 727 n); score: 0.990 PGS (443 510,1828 2130) SGN-E204814+ PGS (2049 2148,2283 2406,2892 3038) SGN-E281960+ PGS (2366 2406,2892 3573) SGN-E340881+ PGS (3174 3618) SGN-E220268- PGS (3288 3618) SGN-E220170- 3-phase translation of AGS-1 (+strand): . . . . . . 443 ATGAAGCAGGGCACGCAGTAGTTGGGACTGCTGTTGCAAATCTTCTTTCCGGGCAGCCAC M K Q G T Q - L G L L L Q I F F P G S H - S R A R S S W D C C C K S S F R A A T E A G H A V V G T A V A N L L S G Q P . : . . . . . 503 GGGTTGAG : AAGCTGAGCATATTGCCAAGATCTGGAGGGGCTTTAGGATTTACTTATATTC G L R : S - A Y C Q D L E G L - D L L I F G - : E A E H I A K I W R G F R I Y L Y S R V E : K L S I L P R S G G A L G F T Y I . . . . . . 1880 CTCCAACCAATGAGGACAGATATCTGCTCTTTGTTGATGAATTGCGTGGGAGGTTGGTCA L Q P M R T D I C S L L M N C V G G W S S N Q - G Q I S A L C - - I A W E V G H P P T N E D R Y L L F V D E L R G R L V . . . . . . 1940 CTCTTCTTGGTGGACGTGCTGCGGAAGAAGTATTGTACTCTGGACGTGTATCTACTGGTG L F L V D V L R K K Y C T L D V Y L L V S S W W T C C G R S I V L W T C I Y W C T L L G G R A A E E V L Y S G R V S T G . . . . . . 2000 CTCTTGATGATATACGCAGAGCTACAGACATGGCCTACAAGGCAGTGGCTGAATATGGTC L L M I Y A E L Q T W P T R Q W L N M V S - - Y T Q S Y R H G L Q G S G - I W S A L D D I R R A T D M A Y K A V A E Y G . . . . . . 2060 TTAGTCAGACCATTGGCCCTATCTCAGTGGCAACACTTTCTGGAGGTGGGATGGATGATG L V R P L A L S Q W Q H F L E V G W M M - S D H W P Y L S G N T F W R W D G - W L S Q T I G P I S V A T L S G G G M D D . . . : . . . 2120 GTGGATCCATGTCCTGGGGAAGGGACCAG : GGGCATCTTGTTGATCTTGTTCAAAGAGAGG V D P C P G E G T R : G I L L I L F K E R W I H V L G K G P : G A S C - S C S K R G G G S M S W G R D Q : G H L V D L V Q R E . . . . . . 2314 TCAAGGCTTTACTGCAGTCTGCACTTGATATTGCACTCTGTGTTGTACGTGCTAATCCCA S R L Y C S L H L I L H S V L Y V L I P Q G F T A V C T - Y C T L C C T C - S Q V K A L L Q S A L D I A L C V V R A N P . . . . : . . 2374 AAGTTCTTGAGGGGTTGGGAGCTCAATTGGAAG : AGAATGAGAAAGTAGAAGGTGAGCAAC K F L R G W E L N W K : R M R K - K V S N S S - G V G S S I G R : E - E S R R - A T K V L E G L G A Q L E : E N E K V E G E Q . . . . . . 2919 TACAAGAATGGTTGAGCATGGTCGTTGCACCAGCAGAACTTAATTTTTTCATAAAGGGCA Y K N G - A W S L H Q Q N L I F S - R A T R M V E H G R C T S R T - F F H K G Q L Q E W L S M V V A P A E L N F F I K G . . . . . . 2979 AAGAAGGATCTTTACTTCCACTGCAAGCAGGCTCTGGATGACAGAAAGTGCAAGCTTAAC K K D L Y F H C K Q A L D D R K C K L N R R I F T S T A S R L W M T E S A S L T K E G S L L P L Q A G S G - Q K V Q A - . . . . . . 3039 CCAGTCAACAGAGTACAAAAACGAATTTCGAATAAGGATTTCCACGCCTTCATCTGTGCT P V N R V Q K R I S N K D F H A F I C A Q S T E Y K N E F R I R I S T P S S V L P S Q Q S T K T N F E - G F P R L H L C . . . . . . 3099 CTCTAGGGAAACAAAGCTATATTCCTGAACCAGATGGGCATCACTTGCTGGCATCCAGAC L - G N K A I F L N Q M G I T C W H P D S R E T K L Y S - T R W A S L A G I Q T S L G K Q S Y I P E P D G H H L L A S R . . . . . . 3159 AGCGTGATTTTGCATGTGTTAGTAAGGTAAATTGACAGCTACTTAACTCCTACAAACACC S V I L H V L V R - I D S Y L T P T N T A - F C M C - - G K L T A T - L L Q T P Q R D F A C V S K V N - Q L L N S Y K H . . . . . . 3219 ATTGTTATATACCACGATCACAGATTGTTAACTCGAAGAGAAGGCATGCGCAAAAGATCT I V I Y H D H R L L T R R E G M R K R S L L Y T T I T D C - L E E K A C A K D L H C Y I P R S Q I V N S K R R H A Q K I . . . . . . 3279 AGCCAAGAGTTTCTTGGTTCTCTAGAGGTGAAATGAAAATAGGCTCGTGATCAGAGTGAT S Q E F L G S L E V K - K - A R D Q S D A K S F L V L - R - N E N R L V I R V M - P R V S W F S R G E M K I G S - S E - . . . . . . 3339 GTCTGTTGGTATTTTCTTCTACATCACTTGTACATGTGCCCAATTATTCTTAGTAATTAC V C W Y F L L H H L Y M C P I I L S N Y S V G I F F Y I T C T C A Q L F L V I T C L L V F S S T S L V H V P N Y S - - L . . . . . . 3399 ACAAGAATCAATACCTTAATATTGTAATATACATCTGTACTGCAGCTTACAAAGAACTAA T R I N T L I L - Y T S V L Q L T K N - Q E S I P - Y C N I H L Y C S L Q R T N H K N Q Y L N I V I Y I C T A A Y K E L . . . . . . 3459 TCCATGTCTAATGTTGTGGGAGAAGGTGTGAAACTGTGTATACAATGTAATCTTTCTGAT S M S N V V G E G V K L C I Q C N L S D P C L M L W E K V - N C V Y N V I F L I I H V - C C G R R C E T V Y T M - S F - . . . . . . 3519 TATGAGACAAAGTTTCAGTAGGTTGCCATAATCTTTGACTTGTGTAAAATTACAAGTATT Y E T K F Q - V A I I F D L C K I T S I M R Q S F S R L P - S L T C V K L Q V L L - D K V S V G C H N L - L V - N Y K Y . . . . 3579 GGATGAGGTAATAGTGACAATTCCTTGTGCTTGTGGTTAA G - G N S D N S L C L W L D E V I V T I P C A C G - W M R - - - Q F L V L V V Maximal non-overlapping open reading frames (>= 64 codons): >C06HBa0054K13.1-5+_PGL-1_AGS-1_PPS_1 (445 510,1828 2148,2283 2406,2892 3019) (frame '0'; 636 bp, 212 residues) 1 EAGHAVVGTA VANLLSGQPR VEKLSILPRS GGALGFTYIP PTNEDRYLLF VDELRGRLVT 61 LLGGRAAEEV LYSGRVSTGA LDDIRRATDM AYKAVAEYGL SQTIGPISVA TLSGGGMDDG 121 GSMSWGRDQG HLVDLVQREV KALLQSALDI ALCVVRANPK VLEGLGAQLE ENEKVEGEQL 181 QEWLSMVVAP AELNFFIKGK EGSLLPLQAG SG- ... finished at: Mon Aug 28 22:10:24 2006 ________________________________________________________________________________ Sequence 6: C06HBa0054K13.1-6, from 1 to 7598, both strands analyzed. ... started at: Mon Aug 28 22:10:24 2006 EST library file: /tmp/cxgn-bacpublish-resources-LF1h7Z/sgn_ests; matching gDNA +strand ... ... found all matches, elapsed seconds = 4 ... matches indexed, elapsed seconds = 4 HitsTableSize = 2 EST library file: /tmp/cxgn-bacpublish-resources-LF1h7Z/sgn_ests; matching gDNA -strand ... ... found all matches, elapsed seconds = 3 ... matches indexed, elapsed seconds = 3 HitsTableSize = 8 ******************************************************************************** EST sequence 1 +strand 509 n (File: SGN-E314138+) 1 AATTCTGGAA GTCACGTGCT CATCAAAGTA AATTTTATAT ACACTGATGC AACGGTCTAT 61 CTCCACAATG GGTGTTCAAA TCCAGTGGTG CATTGTGACT TGAAGCCAAG TGTCTTGCTT 121 GATCAAGACA TGGTTGGCCA TGTCAGTGAT TTTGGCATTG CAAAATTGTT AGGTGCAGGG 181 GAGAGTTTTG TTCAAACAAG GACAATAGCA ACCATTGGAT AATTGCTCCA GAGTATGGAC 241 AAGATGGAAT CGTATCCACA AGCTGCGATG TTTATAGTTT CGGTATCCTG ATTGATGGAG 301 ACGTTTACAA GAATCAGACC AGGTGATGAA AGATTTACTG GAGAGTTGAG CATACGACGT 361 TGGGTTAGTG ATTCTTTTCC AGATGAGATT CATAAGGTGG TGGATGCTAA TTTGGTACAG 421 CCTANGGGAT GAACGAATTG ACGCAAAGAT GCAGTGTCTG TTGTCTATTA TAGAGTTAGC 481 TTTGAGCTGT ACTTTAGCAA CACCTGATG Predicted gene structure (within gDNA segment 1 to 3871): Exon 1 52 239 ( 188 n); cDNA 48 231 ( 184 n); score: 0.872 Intron 1 240 336 ( 97 n); Pd: 0.999 (s: 0.90), Pa: 0.976 (s: 0.90) Exon 2 337 612 ( 276 n); cDNA 232 509 ( 278 n); score: 0.826 MATCH C06HBa0054K13.1-6+ SGN-E314138+ 0.845 464 0.912 C PGS_C06HBa0054K13.1-6+_SGN-E314138+ (52 239,337 612) Alignment (genomic DNA sequence = upper lines): TGCAATGGAT TATCTCCACA ATGGCTATTC AACGCCTGTG GTGCATTGTG ACTTGAAGCC 111 ||||| || |||||||||| |||| | ||| || || ||| |||||||||| |||||||||| TGCAACGGTC TATCTCCACA ATGGGTGTTC AAATCCAGTG GTGCATTGTG ACTTGAAGCC 107 AAGTAATGTC TTGTTAGATG AAGAAATGGT TGCTCATGTA AGTGATTTTG GCATTGCAAA 171 ||| |||| ||| | ||| |||| ||||| || ||||| |||||||||| |||||||||| AAG---TGTC TTGCTTGATC AAGACATGGT TGGCCATGTC AGTGATTTTG GCATTGCAAA 164 AATGTTAGGT GCAGGGGAGG CTTTTGTTCA AACAAGGACA GTTGCAACCA TTGGATATAT 231 | |||||||| ||||||||| ||||||||| |||||||||| | ||||||| ||||||| || ATTGTTAGGT GCAGGGGAGA GTTTTGTTCA AACAAGGACA ATAGCAACCA TTGGATA-AT 223 TGCTCCAGGT ATACTTTAAG TTTTCTCGTA TCGCTTTAAA TACTCAAAAC AATTATTTCC 291 |||||||| TGCTCCAG.. .......... .......... .......... .......... .......... 231 CCTAGGTATA AATTGATTTA TGATCATTTT CTACCATGAT TGCAGAGTAT GGACAAGATG 351 ||||| |||||||||| .......... .......... .......... .......... .....AGTAT GGACAAGATG 246 GAATAGTATC CACGAGTTGT GATGTTTATA GTTTTGGCAT CCTGA-TGAT GGAGACGTTC 410 |||| ||||| ||| || || |||||||||| |||| || || ||||| |||| ||||||||| GAATCGTATC CACAAGCTGC GATGTTTATA GTTTCGGTAT CCTGATTGAT GGAGACGTTT 306 ACACGAACAA GACCAAGTGA TGAGATATTT ACTGGAGACT TGAGCATACA ACGTTGGATT 470 ||| ||| | ||||| |||| ||| | |||| |||||||| | ||||||||| ||||||| || ACAAGAATCA GACCAGGTGA TGAAAGATTT ACTGGAGAGT TGAGCATACG ACGTTGGGTT 366 AGTGATTCCT TTCCGGGGGA ACTTCACAAG GTGGTAGATT CTAATTTGGT ACAGCC-AGG 529 |||||||| | |||| | || |||| ||| ||||| ||| |||||||||| |||||| | | AGTGATTCTT TTCCAGATGA GATTCATAAG GTGGTGGATG CTAATTTGGT ACAGCCTANG 426 AGAAGAACAA ATCGCTGCAA AGATGCAATG TTTGTTATCT ATCATGGAAT TAGCTTTGAA 589 || |||| | || | |||| ||||||| || | |||| ||| || || || | ||||||||| GGATGAACGA ATTGACGCAA AGATGCAGTG TCTGTTGTCT ATTATAGAGT TAGCTTTGAG 486 CTGCACTTTA GTGAGACCTG ATG 612 ||| |||||| | | ||||| ||| CTGTACTTTA GCAACACCTG ATG 509 hqPGS_C06HBa0054K13.1-6+_SGN-E314138+ (52 239,337 612) ******************************************************************************** EST sequence 2 +strand 673 n (File: SGN-E395576+) 1 TTTCATGGCT GAATTTCTCT CTTGTGCCCA CAACGCCATC AGAATGCAGA CAATAATGGC 61 GAAGATGAAG GTGGTGAGGA GTGAAATTGC TGCGAAACAA GTGGTTGTGA TCGAGGAAAA 121 TGAGGAGATA CATTGGTATG CTTCTTGAAT TTCGTCCGGA GGACACAGCT ACTCAAATCC 181 AAATGCAAAG GATCTTCAAG AGTAAAGGAA TAAAACAAGA CCTTGGTTCA TTGTGAAAGT 241 TATGTGTGAT CCATAGCTGA AAGTTTGGCA TTTATCTCGG TTTTCCCTTC CTATTTGATT 301 TTTTTTCAAT AATCGCCGTT AGGTCAATTC TGCTATTTAA GTCAAGTTTC AACCAGCTTT 361 TGGGAATTCT GGAAGTCACG TGCTCATCAA AGTAAATTTT ATATACACTG ATGCAACGGT 421 CTATCTCCAC AATGGGTGTT CAAATCCAGT GGTGCATTGT GACTTGAAGC CAAGTGTCTT 481 GCTTGATCAA GACATGGTTG GCCATGTCAG TGATTTTGGC ATTGCAAAAT TGTTAGGTGC 541 AGGGGAGAGT TTTGTTCAAA CAAGGACAAT AGCAACCATT GGATAATTGC TCCAGAGTAT 601 GGACAAGATG GAATCGTATC CACAAGCTGC GATGTTTATA GTTTCGGTAT CCTGATTGAT 661 GGAAACTTTT ACA Predicted gene structure (within gDNA segment 1 to 1871): Exon 1 52 239 ( 188 n); cDNA 412 595 ( 184 n); score: 0.872 Intron 1 240 336 ( 97 n); Pd: 0.999 (s: 0.90), Pa: 0.976 (s: 0.90) Exon 2 337 413 ( 77 n); cDNA 596 673 ( 78 n); score: 0.851 MATCH C06HBa0054K13.1-6+ SGN-E395576+ 0.866 265 0.394 C PGS_C06HBa0054K13.1-6+_SGN-E395576+ (52 239,337 413) Alignment (genomic DNA sequence = upper lines): TGCAATGGAT TATCTCCACA ATGGCTATTC AACGCCTGTG GTGCATTGTG ACTTGAAGCC 111 ||||| || |||||||||| |||| | ||| || || ||| |||||||||| |||||||||| TGCAACGGTC TATCTCCACA ATGGGTGTTC AAATCCAGTG GTGCATTGTG ACTTGAAGCC 471 AAGTAATGTC TTGTTAGATG AAGAAATGGT TGCTCATGTA AGTGATTTTG GCATTGCAAA 171 ||| |||| ||| | ||| |||| ||||| || ||||| |||||||||| |||||||||| AAG---TGTC TTGCTTGATC AAGACATGGT TGGCCATGTC AGTGATTTTG GCATTGCAAA 528 AATGTTAGGT GCAGGGGAGG CTTTTGTTCA AACAAGGACA GTTGCAACCA TTGGATATAT 231 | |||||||| ||||||||| ||||||||| |||||||||| | ||||||| ||||||| || ATTGTTAGGT GCAGGGGAGA GTTTTGTTCA AACAAGGACA ATAGCAACCA TTGGATA-AT 587 TGCTCCAGGT ATACTTTAAG TTTTCTCGTA TCGCTTTAAA TACTCAAAAC AATTATTTCC 291 |||||||| TGCTCCAG.. .......... .......... .......... .......... .......... 595 CCTAGGTATA AATTGATTTA TGATCATTTT CTACCATGAT TGCAGAGTAT GGACAAGATG 351 ||||| |||||||||| .......... .......... .......... .......... .....AGTAT GGACAAGATG 610 GAATAGTATC CACGAGTTGT GATGTTTATA GTTTTGGCAT CCTGA-TGAT GGAGACGTTC 410 |||| ||||| ||| || || |||||||||| |||| || || ||||| |||| ||| || || GAATCGTATC CACAAGCTGC GATGTTTATA GTTTCGGTAT CCTGATTGAT GGAAACTTTT 670 ACA 413 ||| ACA 673 hqPGS_C06HBa0054K13.1-6+_SGN-E395576+ (52 239,337 413) ******************************************************************************** EST sequence 4 -strand 812 n (File: SGN-E541708-) 1 ATCCAGTGGT GCATTGTGAC TTGAAGCCAA GTGTCTTGCT TGATCAAGAC ATGGTTGGCC 61 ATGTCAGTGA TTTTGGCATT GCAAAATTGT TAGGTGCAGG GGAGAGTTTT GTTCAAACAA 121 GGACAATAGC AACCATTGGA TAATTGCTCC AGAGTATGGA CAAGATGGAA TCGTATCCAC 181 AAGCTGCGAT GTTTATAGTT TCGGTATCCT GATTGATGGA GACGTTTACA AGAATCAGAC 241 CAGGTGATGA AAGATTTACT GGAGAGTTGA GCATACGACG TTGGGTTAGT GATTCTTTTC 301 CAGATGAGAT TCATAAGGTG GTGGATGCTA ATTTGGTACA GCCTAGGGGA TGAACGAATT 361 GACGCAAAGA TGCAGTGTCT GTTGTCTATT ATAGAGTTAG CTTTGAGCTG TACTTTAGCA 421 ACACCTGATG CAAGAATTAG TATGGAAGAT TCTCTTTCAA CACTTCAAAA TATCAGGCTC 481 CAGTTTGTCA ATAGTCGCCA CCGAAAAAAG CAACTGAAGG ATTTAGTACC GAAAAAAGCA 541 ACTTGCTTGG TAATGGCAAG GTCTACAATG TACAATTGGA GGGTGCATTC AAAAGTTTTG 601 ATACAGAAGA ATGTGAAATC TGACCAAAGT CATCAAAGCC TTAATGTTAG AATACATGTC 661 TAGTGGGACA CTTGATAAAT GGCTGTACTC TCACAAGTTG TTCTTGGATT TACTTCATAT 721 TATGTACTCT TTCACTTTCA GTGCCAGCTG GAATGGTGAT TTTCTAGCTA CTGGAGTTCA 781 CAATTCTAAT CCATAAAAAA AAAAAAAAAA AA Predicted gene structure (within gDNA segment 1 to 7598): Exon 1 86 239 ( 154 n); cDNA 3 152 ( 150 n); score: 0.890 Intron 1 240 336 ( 97 n); Pd: 0.999 (s: 0.90), Pa: 0.976 (s: 0.90) Exon 2 337 683 ( 347 n); cDNA 153 501 ( 349 n); score: 0.818 PPA cDNA 793 812 MATCH C06HBa0054K13.1-6+ SGN-E541708- 0.840 501 0.617 C PGS_C06HBa0054K13.1-6+_SGN-E541708- (86 239,337 683) Alignment (genomic DNA sequence = upper lines): CCTGTGGTGC ATTGTGACTT GAAGCCAAGT AATGTCTTGT TAGATGAAGA AATGGTTGCT 145 || ||||||| |||||||||| ||||||||| ||||||| | ||| |||| ||||||| CCAGTGGTGC ATTGTGACTT GAAGCCAAG- --TGTCTTGC TTGATCAAGA CATGGTTGGC 59 CATGTAAGTG ATTTTGGCAT TGCAAAAATG TTAGGTGCAG GGGAGGCTTT TGTTCAAACA 205 ||||| |||| |||||||||| ||||||| || |||||||||| ||||| ||| |||||||||| CATGTCAGTG ATTTTGGCAT TGCAAAATTG TTAGGTGCAG GGGAGAGTTT TGTTCAAACA 119 AGGACAGTTG CAACCATTGG ATATATTGCT CCAGGTATAC TTTAAGTTTT CTCGTATCGC 265 |||||| | | |||||||||| ||| |||||| |||| AGGACAATAG CAACCATTGG ATA-ATTGCT CCAG...... .......... .......... 152 TTTAAATACT CAAAACAATT ATTTCCCCTA GGTATAAATT GATTTATGAT CATTTTCTAC 325 .......... .......... .......... .......... .......... .......... 152 CATGATTGCA GAGTATGGAC AAGATGGAAT AGTATCCACG AGTTGTGATG TTTATAGTTT 385 ||||||||| |||||||||| |||||||| || || |||| |||||||||| .......... .AGTATGGAC AAGATGGAAT CGTATCCACA AGCTGCGATG TTTATAGTTT 201 TGGCATCCTG A-TGATGGAG ACGTTCACAC GAACAAGACC AAGTGATGAG ATATTTACTG 444 || |||||| | |||||||| ||||| ||| ||| ||||| | ||||||| | |||||||| CGGTATCCTG ATTGATGGAG ACGTTTACAA GAATCAGACC AGGTGATGAA AGATTTACTG 261 GAGACTTGAG CATACAACGT TGGATTAGTG ATTCCTTTCC GGGGGAACTT CACAAGGTGG 504 |||| ||||| ||||| |||| ||| |||||| |||| ||||| | || || || ||||||| GAGAGTTGAG CATACGACGT TGGGTTAGTG ATTCTTTTCC AGATGAGATT CATAAGGTGG 321 TAGATTCTAA TTTGGTACAG CC-AGGAGAA GAACAAATCG CTGCAAAGAT GCAATGTTTG 563 | ||| |||| |||||||||| || ||| || |||| ||| | |||||||| ||| ||| || TGGATGCTAA TTTGGTACAG CCTAGGGGAT GAACGAATTG ACGCAAAGAT GCAGTGTCTG 381 TTATCTATCA TGGAATTAGC TTTGAACTGC ACTTTAGTGA GACCTGATGA AAGAATTAGC 623 || ||||| | | || ||||| ||||| ||| ||||||| | |||||||| ||||||||| TTGTCTATTA TAGAGTTAGC TTTGAGCTGT ACTTTAGCAA CACCTGATGC AAGAATTAGT 441 ATGAATGATG CTCTTTCAGC ACTCAAAAAG ATTAGACTAC AGCTTGTTAG TAGTCGGCAC 683 ||| | ||| |||||||| | ||| |||| || || || | || |||| | |||||| ||| ATGGAAGATT CTCTTTCAAC ACTTCAAAAT ATCAGGCTCC AGTTTGTCAA TAGTCGCCAC 501 hqPGS_C06HBa0054K13.1-6+_SGN-E541708- (86 239,337 683) ******************************************************************************** EST sequence 8 -strand 641 n (File: SGN-E301078-) 1 ATATGTAAAT TGTAATGAAT AATAAAATGT AACAATTACA AAATTCAAAG ACATACGACA 61 ATAAATCATT CATAGAAAAC TAAATTAAGA AGTCTAACAG AGTGAAAAAA AAGACTAAAA 121 GAAACAGAAT ATTTAAGAAA AAAATACAAT ATAGACATTA TTCTTATAAG ATTGATGTAT 181 ATATAGATGA AAAAATAAGT AAAAATTAGT ACATAACTCT CTGAGTTTTT ATCGACTCCT 241 TTCATATCCT ATCAAAATTC AAGAGTTTTC AGCATCTATT TTTACTATAG AATAAAAATA 301 ATAATCTTGA TAGGGGTTTC ATGAGATAAA GAAGTTGAAT TTATACAAAT AGAATAGAAG 361 GAATACCAAA AGATATCTTA AAGTTTAATT TAAATATTTG GAGGTTATGA ATATGAAAAG 421 ATGATAGTTA TGAATATTAA GAGTGTTGTG CGAAATTTGA GATAATACGA GAAAATATAT 481 AAACGCGAAA ACCAAGACAC CAGTTTTACG TGGTTCACCA ATAAATTGGC TACGTCCACG 541 GGAAGAGAGG GAGCAATTTT ATTATGGAGA GGCAAAAACA GAATTACAGA ATAGGGTTTG 601 CCATAGCGTC TATATATAGT GCTAAGCTAC ACCCTAAAAG G Predicted gene structure (within gDNA segment 1 to 6450): Exon 1 240 258 ( 19 n); cDNA 383 400 ( 18 n); score: 0.684 Intron 1 259 812 ( 554 n); Pd: 0.759 (s: 0), Pa: 0.000 (s: 0.64) Exon 2 813 1061 ( 249 n); cDNA 401 641 ( 241 n); score: 0.863 MATCH C06HBa0054K13.1-6+ SGN-E301078- 0.863 268 0.418 C PGS_C06HBa0054K13.1-6+_SGN-E301078- (240 258,813 1061) Alignment (genomic DNA sequence = upper lines): GTATACTTTA AGTTTTCTCG TATCGCTTTA AATACTCAAA ACAATTATTT CCCCTAGGTA 299 || || |||| | | || | GTTTAATTTA AATATT-TG. .......... .......... .......... .......... 400 TAAATTGATT TATGATCATT TTCTACCATG ATTGCAGAGT ATGGACAAGA TGGAATAGTA 359 .......... .......... .......... .......... .......... .......... 400 TCCACGAGTT GTGATGTTTA TAGTTTTGGC ATCCTGATGA TGGAGACGTT CACACGAACA 419 .......... .......... .......... .......... .......... .......... 400 AGACCAAGTG ATGAGATATT TACTGGAGAC TTGAGCATAC AACGTTGGAT TAGTGATTCC 479 .......... .......... .......... .......... .......... .......... 400 TTTCCGGGGG AACTTCACAA GGTGGTAGAT TCTAATTTGG TACAGCCAGG AGAAGAACAA 539 .......... .......... .......... .......... .......... .......... 400 ATCGCTGCAA AGATGCAATG TTTGTTATCT ATCATGGAAT TAGCTTTGAA CTGCACTTTA 599 .......... .......... .......... .......... .......... .......... 400 GTGAGACCTG ATGAAAGAAT TAGCATGAAT GATGCTCTTT CAGCACTCAA AAAGATTAGA 659 .......... .......... .......... .......... .......... .......... 400 CTACAGCTTG TTAGTAGTCG GCACTAGGTG GAATCATTAC CAATCTTCTC TTGTATGTTA 719 .......... .......... .......... .......... .......... .......... 400 TTTAGTTACC AGTCTGCTCT CTTATGGAAT TTAGTTTCGC GCTAGGTGTA TTTTGTGTTG 779 .......... .......... .......... .......... .......... .......... 400 GTTGTTGGTG CTTGATATAT GGAAGTTGAG AATGAGATTT AAAATGCTCA AAACAAGATT 839 ||| || ||| | | ||| | ||| .......... .......... .......... ...GAGGTTA TGAAT-ATGA AAAGATGATA 426 GTCTTTTCTT ATTTATACTG TTGTGCGGAA TTTGAGATAA TACGAGAAAA TATATAAACG 899 || | | | ||| | | || ||||||| || |||||||||| |||||||||| |||||||||| GT-TATGAAT ATTAAGAGTG TTGTGCGAAA TTTGAGATAA TACGAGAAAA TATATAAACG 485 CGAAAAACAA GACAACATAT TTACGTGGTT CACCAATAAA TTGGCTACGT CCACGGGAAG 959 |||||| ||| |||| || | |||||||||| |||||||||| |||||||||| |||||||||| CGAAAACCAA GACACCAGTT TTACGTGGTT CACCAATAAA TTGGCTACGT CCACGGGAAG 545 AGAGGGAGCA GTTTTATTAT GGAGAGGCAA AAACAGAATT ACAAAATAGG GTTTGCCATA 1019 |||||||||| ||||||||| |||||||||| |||||||||| ||| |||||| |||||||||| AGAGGGAGCA ATTTTATTAT GGAGAGGCAA AAACAGAATT ACAGAATAGG GTTTGCCATA 605 GCGTCTATAT ATATATATAG TGTTAAGCTA CGCCCTAACA GG 1061 ||||| ||||||||| || ||||||| | |||||| | || GCGTC----- -TATATATAG TGCTAAGCTA CACCCTAAAA GG 641 hqPGS_C06HBa0054K13.1-6+_SGN-E301078- (813 1061) ******************************************************************************** EST sequence 9 -strand 575 n (File: SGN-E301194-) 1 CATTCATAGA AAACTAAATT AAGAAGTCTA ACAGAGTGAA AAAAAAGACT AAAAGAAACA 61 GAATATTTAA GAAAAAAATA CAATATAGAC ATTATTCTTA TAAGATTGAT GTATATATAG 121 ATGAAAAAAT AAGTAAAAAT TAGTACATAA CTCTCTGAGT TTTTATCGAC TCCTTTCATA 181 TCCTATCAAA ATTCAAGAGT TTTCAGCATC TATTTTTACT ATAGAATAAA AATAATAATC 241 TTGATAGGGG TTTCATGAGA TAAAGAAGTT GAATTTATAC AAATAGAATA GAAGGAATAC 301 CAAAAGATTT CTTAAAGTTT AATTTAAATA TTTGGAGGTT ATGAATATGA AAAGATGATA 361 GTTATGAATA TTAAGAGTGT TGTGCGAAAT TTGAGATAAT ACGAGAAAAT ATATAAACGC 421 GAAAAACAAG ACAACAGATT TACGTGGTTC ACCAATAAAT TGGCTACGTC CACGGGAAGA 481 GAGGGAGCAA TTTTATTATG GAGAGGCAAA AACAGAATTA CAGAATAGGG TTTGCCATAG 541 CGTCTATATA TAGTGCTAAG CTACGCCCTA AAAGG Predicted gene structure (within gDNA segment 1 to 1862): Exon 1 240 258 ( 19 n); cDNA 317 334 ( 18 n); score: 0.684 Intron 1 259 812 ( 554 n); Pd: 0.759 (s: 0), Pa: 0.000 (s: 0.64) Exon 2 813 1061 ( 249 n); cDNA 335 575 ( 241 n); score: 0.880 MATCH C06HBa0054K13.1-6+ SGN-E301194- 0.880 268 0.466 C PGS_C06HBa0054K13.1-6+_SGN-E301194- (240 258,813 1061) Alignment (genomic DNA sequence = upper lines): GTATACTTTA AGTTTTCTCG TATCGCTTTA AATACTCAAA ACAATTATTT CCCCTAGGTA 299 || || |||| | | || | GTTTAATTTA AATATT-TG. .......... .......... .......... .......... 334 TAAATTGATT TATGATCATT TTCTACCATG ATTGCAGAGT ATGGACAAGA TGGAATAGTA 359 .......... .......... .......... .......... .......... .......... 334 TCCACGAGTT GTGATGTTTA TAGTTTTGGC ATCCTGATGA TGGAGACGTT CACACGAACA 419 .......... .......... .......... .......... .......... .......... 334 AGACCAAGTG ATGAGATATT TACTGGAGAC TTGAGCATAC AACGTTGGAT TAGTGATTCC 479 .......... .......... .......... .......... .......... .......... 334 TTTCCGGGGG AACTTCACAA GGTGGTAGAT TCTAATTTGG TACAGCCAGG AGAAGAACAA 539 .......... .......... .......... .......... .......... .......... 334 ATCGCTGCAA AGATGCAATG TTTGTTATCT ATCATGGAAT TAGCTTTGAA CTGCACTTTA 599 .......... .......... .......... .......... .......... .......... 334 GTGAGACCTG ATGAAAGAAT TAGCATGAAT GATGCTCTTT CAGCACTCAA AAAGATTAGA 659 .......... .......... .......... .......... .......... .......... 334 CTACAGCTTG TTAGTAGTCG GCACTAGGTG GAATCATTAC CAATCTTCTC TTGTATGTTA 719 .......... .......... .......... .......... .......... .......... 334 TTTAGTTACC AGTCTGCTCT CTTATGGAAT TTAGTTTCGC GCTAGGTGTA TTTTGTGTTG 779 .......... .......... .......... .......... .......... .......... 334 GTTGTTGGTG CTTGATATAT GGAAGTTGAG AATGAGATTT AAAATGCTCA AAACAAGATT 839 ||| || ||| | | ||| | ||| .......... .......... .......... ...GAGGTTA TGAAT-ATGA AAAGATGATA 360 GTCTTTTCTT ATTTATACTG TTGTGCGGAA TTTGAGATAA TACGAGAAAA TATATAAACG 899 || | | | ||| | | || ||||||| || |||||||||| |||||||||| |||||||||| GT-TATGAAT ATTAAGAGTG TTGTGCGAAA TTTGAGATAA TACGAGAAAA TATATAAACG 419 CGAAAAACAA GACAACATAT TTACGTGGTT CACCAATAAA TTGGCTACGT CCACGGGAAG 959 |||||||||| ||||||| || |||||||||| |||||||||| |||||||||| |||||||||| CGAAAAACAA GACAACAGAT TTACGTGGTT CACCAATAAA TTGGCTACGT CCACGGGAAG 479 AGAGGGAGCA GTTTTATTAT GGAGAGGCAA AAACAGAATT ACAAAATAGG GTTTGCCATA 1019 |||||||||| ||||||||| |||||||||| |||||||||| ||| |||||| |||||||||| AGAGGGAGCA ATTTTATTAT GGAGAGGCAA AAACAGAATT ACAGAATAGG GTTTGCCATA 539 GCGTCTATAT ATATATATAG TGTTAAGCTA CGCCCTAACA GG 1061 ||||| ||||||||| || ||||||| |||||||| | || GCGTC----- -TATATATAG TGCTAAGCTA CGCCCTAAAA GG 575 hqPGS_C06HBa0054K13.1-6+_SGN-E301194- (813 1061) ******************************************************************************** EST sequence 6 +strand 808 n (File: SGN-E343338+) 1 GTTTCCAAGT TCCAGGGAAG GAAAATCACG TCTGCAAGTT GAAGAAGTCC TTATATGGAC 61 TTAAGCAGTC TCCAAGGCAG TGGTATAAAA GGTTTGACAG CTATATGGTG AAGTTGGGCT 121 ATACTCGGAG CTCATATGAT TGTTGTGTCT ACTACAATAG GCTCAATGAT GATTCATTCA 181 TCTATCTGGT GCTTTATGTA GATGATATGT TGATAGCTGC AAAGAAGAAG TATGACATTC 241 AGAAGCTGAA GGGTTTACTT AGTGCTGAGT TTGAGATGAA GGATCTGGGA GCCGCTCGGA 301 AGATTTTAGG GATGGAGATC ATTAGAGACA GAGAGAGAAG GAAACTTTTC TTGTCACAGA 361 GAAGCTACAT TCAGAAGGTC TTGGCGAGGT TTGGCATGTC TTCATCTAAG CCCATTGATA 421 CCCCCAGTGC TGCCAATATC CATCTCACTG CCATGTTCGC TCCACAGTCA GAAGAAGAGA 481 AGGAGTATAT GTCACGAGTC CCTTATGCCA GTGCCGTAAG AAGTTTGATG TATGCTATGG 541 TCTGTACAAG GCCAGATTTA GCACATGCAG TCAGTGTAGT GAGCAGATTC ATGGGACAAC 601 CAGGGAGAGA ACATTGGCAG GCTGTGAAGA GAATTTTCCG GTACCTTAGA GGTACATCTG 661 ACGTTGGTCT CATTTATGGA GGTGATACTC AGTGCTTGGT TACTGGCTAT TCTGATTCAG 721 ACTATGCTGG AGATGTTGAC ACAAGAAGAT CGATGACTGG CTATGTGTTT ACCCTGGGAG 781 GATCTGTCGT CAGTTGGAAG GCAACTTT Predicted gene structure (within gDNA segment 2957 to 877): Exon 1 2357 1550 ( 808 n); cDNA 1 808 ( 808 n); score: 0.979 MATCH C06HBa0054K13.1-6- SGN-E343338+ 0.979 808 1.000 C PGS_C06HBa0054K13.1-6-_SGN-E343338+ (2357 1550) Alignment (genomic DNA sequence = upper lines): GTTTCCAAGT TCCAGGGAAG GAAAATCACG TCTGCAAGTT GAAGAAGTCC TTATATGGAC 2298 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTTCCAAGT TCCAGGGAAG GAAAATCACG TCTGCAAGTT GAAGAAGTCC TTATATGGAC 60 TTAAGCAGTC TCCAAGGCAG TGGTACAAAA GGTTTGACAG CTATATGGCG AAGTTGGGCT 2238 |||||||||| |||||||||| ||||| |||| |||||||||| |||||||| | |||||||||| TTAAGCAGTC TCCAAGGCAG TGGTATAAAA GGTTTGACAG CTATATGGTG AAGTTGGGCT 120 ATACTCGGAG CTCATATGAT TGTTGTGTCT ACTACAATAG GCTCAAGGAT GATTCGTTCA 2178 |||||||||| |||||||||| |||||||||| |||||||||| |||||| ||| ||||| |||| ATACTCGGAG CTCATATGAT TGTTGTGTCT ACTACAATAG GCTCAATGAT GATTCATTCA 180 TCTATCTGGT GCTTTATGTA GATGATATGC TGATAGCTGC AAAGAAGAAG TATGACATTC 2118 |||||||||| |||||||||| ||||||||| |||||||||| |||||||||| |||||||||| TCTATCTGGT GCTTTATGTA GATGATATGT TGATAGCTGC AAAGAAGAAG TATGACATTC 240 ATAAGCTGAA GGGTTTACTT AGTGCGGAGT TTGAGATGAA GGATCTGGGA GCTGCTCGGA 2058 | |||||||| |||||||||| ||||| |||| |||||||||| |||||||||| || ||||||| AGAAGCTGAA GGGTTTACTT AGTGCTGAGT TTGAGATGAA GGATCTGGGA GCCGCTCGGA 300 AGATTCTAGG GATGGAGATC ATTAGAGACA GAGAGAGAAG GAAACTTTTC TTGTCACAGA 1998 ||||| |||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGATTTTAGG GATGGAGATC ATTAGAGACA GAGAGAGAAG GAAACTTTTC TTGTCACAGA 360 GAAGCTACAT TCAGAAGGTC TTGGCGAGGT TTGGCATGTC TTCATCTAAG CCTATTGATA 1938 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| || ||||||| GAAGCTACAT TCAGAAGGTC TTGGCGAGGT TTGGCATGTC TTCATCTAAG CCCATTGATA 420 ACCCTAGTGC TGCCAATATC CACCTCACTG CCATGTTCGC TCCACAGTCA GAAGAAGAGA 1878 ||| ||||| |||||||||| || ||||||| |||||||||| |||||||||| |||||||||| CCCCCAGTGC TGCCAATATC CATCTCACTG CCATGTTCGC TCCACAGTCA GAAGAAGAGA 480 AGGAGTATAT GTCACGAGTC CCTTATGCCA GTGTCGTAGG AAGTTTGATG TATGCTATGG 1818 |||||||||| |||||||||| |||||||||| ||| |||| | |||||||||| |||||||||| AGGAGTATAT GTCACGAGTC CCTTATGCCA GTGCCGTAAG AAGTTTGATG TATGCTATGG 540 TCTGTACAAG GCCAGATTTA GCACATGCAG TCAGTGTAGT GAGCAGATTC ATGGGACAAC 1758 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTGTACAAG GCCAGATTTA GCACATGCAG TCAGTGTAGT GAGCAGATTC ATGGGACAAC 600 CAGGGAGAGA ACATTGGCAG GCTGTGAAGA GAATTTTCCG GTACCTTAGA GGTACATCTG 1698 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAGGGAGAGA ACATTGGCAG GCTGTGAAGA GAATTTTCCG GTACCTTAGA GGTACATCTG 660 ACGTTGGTCT CATTTATGGA GGTGATACTC AGTGCTTGGT TACTGGCTAT TCTGATTCAG 1638 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACGTTGGTCT CATTTATGGA GGTGATACTC AGTGCTTGGT TACTGGCTAT TCTGATTCAG 720 ACTATGCTGG AGATGTTGAC ACAAGAAGAT CGATGACTGG CTATGTGTTT ACCCTTGGAG 1578 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||| |||| ACTATGCTGG AGATGTTGAC ACAAGAAGAT CGATGACTGG CTATGTGTTT ACCCTGGGAG 780 GATCTGTCGT CAGTTGGAAG GTAACTTT 1550 |||||||||| |||||||||| | |||||| GATCTGTCGT CAGTTGGAAG GCAACTTT 808 hqPGS_C06HBa0054K13.1-6-_SGN-E343338+ (2357 1550) ******************************************************************************** EST sequence 3 +strand 649 n (File: SGN-E539761+) 1 TACGTCAGAA ACTAGGAGTC TTGACAAACA GGTGGAGTTT CAAGTCATTC AGAACGAGAG 61 CGATTTAAAG GAACCTGAAG AGGAGGATCA AGAGCCACAG ACTGAAACTG ATATTCCAGA 121 ATCTATGCCA TCAGATATCC ATCAGAGTAT AGCTCAAGAT CGGCCAAGGA GGGTTGGAGT 181 TCGGCCACCT ACGAGGTATG GTTTTGAGGA CATGGTGGGT TATGCACTGC AGGTTGCTGA 241 AGAGGTAGAT ACATCTGAGC CGTCTACTTA CAAAGAAGCC ATTTTAAGTT CTGATTCTGA 301 AAAATGGTTT GCCGCTATGG GAGATGAGAT GGAGTCCCTA CACAAGAATC AGACATGGGA 361 TCTGGTCATA CAGCCTTCGG GGAGAAAGAT TATTACTTGC AAATGGGTTT TCAAGAAGAA 421 GGAAGGGATA TCACCAGCAG AAGGAGTCAA GTATAAAGTC AGGGTTGTTG CTAGAGGTTT 481 CAACCAAAGA GAGGGAGTGG ACTACAATGA GATCTTCTCA CCAGTGGTCA GACATACTTC 541 CATCCGAGTG TTACTAGCGA TAGTTGCACA TCAGAATCTG GAGCTTGAAA CACTTGATGT 601 GAAGACAGCG TTTCTACATG GAGAGTTGGA GGAAGAGATA TACATGACT Predicted gene structure (within gDNA segment 3742 to 1758): Exon 1 3016 2368 ( 649 n); cDNA 1 649 ( 649 n); score: 0.982 MATCH C06HBa0054K13.1-6- SGN-E539761+ 0.982 649 1.000 C PGS_C06HBa0054K13.1-6-_SGN-E539761+ (3016 2368) Alignment (genomic DNA sequence = upper lines): TACGTCAGAA ACTGGGAGTC TTGACAAACA GGTGGAGTTT CAAGTCATTC AGAACGAGAG 2957 |||||||||| ||| |||||| |||||||||| |||||||||| |||||||||| |||||||||| TACGTCAGAA ACTAGGAGTC TTGACAAACA GGTGGAGTTT CAAGTCATTC AGAACGAGAG 60 CGATTTAAAG GAACCTGAAG AGGAGGATCA AGAGCCACAG ACAGAAACTG ATATTCCAGA 2897 |||||||||| |||||||||| |||||||||| |||||||||| || ||||||| |||||||||| CGATTTAAAG GAACCTGAAG AGGAGGATCA AGAGCCACAG ACTGAAACTG ATATTCCAGA 120 ATCTATGCCA TCAGATATCC ATCAGAGTAT AGCTCAAGAT CGGCCAAGGA GGGTTGGAGT 2837 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCTATGCCA TCAGATATCC ATCAGAGTAT AGCTCAAGAT CGGCCAAGGA GGGTTGGAGT 180 TCGGCCACCT ACGAGGTGTG GTTTTGAGGA CATGGTGGGT TATGCACTGC AGGTTGCTGA 2777 |||||||||| ||||||| || |||||||||| |||||||||| |||||||||| |||||||||| TCGGCCACCT ACGAGGTATG GTTTTGAGGA CATGGTGGGT TATGCACTGC AGGTTGCTGA 240 AGAGGTAGAT GCATCTGAGC CGTCTACTTA CAAAGAAGCC ATTTTAAGTC CTGATTCTGA 2717 |||||||||| ||||||||| |||||||||| |||||||||| ||||||||| |||||||||| AGAGGTAGAT ACATCTGAGC CGTCTACTTA CAAAGAAGCC ATTTTAAGTT CTGATTCTGA 300 AAAATGGTTT GCTGCTATGG GAGATGAGAT GGAGTCCCTA CACAAGAATC AGACATGGGA 2657 |||||||||| || ||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAATGGTTT GCCGCTATGG GAGATGAGAT GGAGTCCCTA CACAAGAATC AGACATGGGA 360 TCTGGTCATA CAGCCTTCGG GGAGAAAGAT TATTACTTGC AAATGGGTTT TCAAGAAGAA 2597 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTGGTCATA CAGCCTTCGG GGAGAAAGAT TATTACTTGC AAATGGGTTT TCAAGAAGAA 420 GGAAGGGATA TCACCAGCAG AAGGAGTCAA GTATATAGCC AGGGTTGTTG CCAGAGGTTT 2537 |||||||||| |||||||||| |||||||||| ||||| || | |||||||||| | |||||||| GGAAGGGATA TCACCAGCAG AAGGAGTCAA GTATAAAGTC AGGGTTGTTG CTAGAGGTTT 480 CAACCAAAGA GAGGGAGTGG ACTACAATGA GATCTTCTCA CCAGTGGTCA GACATACTTC 2477 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAACCAAAGA GAGGGAGTGG ACTACAATGA GATCTTCTCA CCAGTGGTCA GACATACTTC 540 CATCCGAGTG TTACTAGCGA TAGTTACACA TCAGAATCTG GAGCTTGAAC AACTTGATGT 2417 |||||||||| |||||||||| ||||| |||| |||||||||| ||||||||| ||||||||| CATCCGAGTG TTACTAGCGA TAGTTGCACA TCAGAATCTG GAGCTTGAAA CACTTGATGT 600 GAAGACAGCG TTTCTACATG GAGAGTTGGA GGAAGAGATA TACATGACT 2368 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| GAAGACAGCG TTTCTACATG GAGAGTTGGA GGAAGAGATA TACATGACT 649 hqPGS_C06HBa0054K13.1-6-_SGN-E539761+ (3016 2368) ******************************************************************************** EST sequence 5 +strand 385 n (File: SGN-E284788+) 1 ACGTTAGAAA CTAGGAGTCT TGACAAACAG GTGGAGTTTC AAGTCATTCA GAACGAGAGC 61 GATTTAAAGG AACCTGAAGA GGAGGATCAA GAGCCACAGA CTGAAACTGA TATTCCAGAA 121 TCTATGCCAT CAGATATCCA TCAGAGTATA GCTCAAGATC GGTCAAGGAG GGTTGGAGTT 181 CGGCCACCTA CGAGGTATGG TTTTGAGGAC ATGGTGGGTT ATGCACTGCA GGCTGCTGAA 241 GAGGTAGATA CATCTGAGCC GTCTACTTAC AAAGAAGCCA TTTTAAGTTC TGATTCTGAA 301 AAATGGTTTG CCGATATGGG AGATGAGATG GAGTCCCTAC ACAAGAATCA GACATGGGAT 361 CTGGTCATAC AGTCTTCGGG GAGAA Predicted gene structure (within gDNA segment 3732 to 1904): Exon 1 3015 2631 ( 385 n); cDNA 1 385 ( 385 n); score: 0.971 MATCH C06HBa0054K13.1-6- SGN-E284788+ 0.971 385 1.000 C PGS_C06HBa0054K13.1-6-_SGN-E284788+ (3015 2631) Alignment (genomic DNA sequence = upper lines): ACGTCAGAAA CTGGGAGTCT TGACAAACAG GTGGAGTTTC AAGTCATTCA GAACGAGAGC 2956 |||| ||||| || ||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACGTTAGAAA CTAGGAGTCT TGACAAACAG GTGGAGTTTC AAGTCATTCA GAACGAGAGC 60 GATTTAAAGG AACCTGAAGA GGAGGATCAA GAGCCACAGA CAGAAACTGA TATTCCAGAA 2896 |||||||||| |||||||||| |||||||||| |||||||||| | |||||||| |||||||||| GATTTAAAGG AACCTGAAGA GGAGGATCAA GAGCCACAGA CTGAAACTGA TATTCCAGAA 120 TCTATGCCAT CAGATATCCA TCAGAGTATA GCTCAAGATC GGCCAAGGAG GGTTGGAGTT 2836 |||||||||| |||||||||| |||||||||| |||||||||| || ||||||| |||||||||| TCTATGCCAT CAGATATCCA TCAGAGTATA GCTCAAGATC GGTCAAGGAG GGTTGGAGTT 180 CGGCCACCTA CGAGGTGTGG TTTTGAGGAC ATGGTGGGTT ATGCACTGCA GGTTGCTGAA 2776 |||||||||| |||||| ||| |||||||||| |||||||||| |||||||||| || ||||||| CGGCCACCTA CGAGGTATGG TTTTGAGGAC ATGGTGGGTT ATGCACTGCA GGCTGCTGAA 240 GAGGTAGATG CATCTGAGCC GTCTACTTAC AAAGAAGCCA TTTTAAGTCC TGATTCTGAA 2716 ||||||||| |||||||||| |||||||||| |||||||||| |||||||| | |||||||||| GAGGTAGATA CATCTGAGCC GTCTACTTAC AAAGAAGCCA TTTTAAGTTC TGATTCTGAA 300 AAATGGTTTG CTGCTATGGG AGATGAGATG GAGTCCCTAC ACAAGAATCA GACATGGGAT 2656 |||||||||| | | |||||| |||||||||| |||||||||| |||||||||| |||||||||| AAATGGTTTG CCGATATGGG AGATGAGATG GAGTCCCTAC ACAAGAATCA GACATGGGAT 360 CTGGTCATAC AGCCTTCGGG GAGAA 2631 |||||||||| || ||||||| ||||| CTGGTCATAC AGTCTTCGGG GAGAA 385 hqPGS_C06HBa0054K13.1-6-_SGN-E284788+ (3015 2631) Total number of EST alignments reported: 8 ________________________________________________________________________________ Predicted gene locations (2) in segment 1 to 7598: PGL 1 (+ strand): 52 1061 AGS-1 (52 239,337 683) SCR (e 0.872 d 0.999 a 0.976,e 0.818) Exon 1 52 239 ( 188 n); score: 0.872 Intron 1 240 336 ( 97 n); Pd: 0.999 Pa: 0.976 Exon 2 337 683 ( 347 n); score: 0.818 PGS (52 239,337 612) SGN-E314138+ PGS (52 239,337 413) SGN-E395576+ PGS (86 239,337 683) SGN-E541708- 3-phase translation of AGS-1 (+strand): . . . . . . 52 TGCAATGGATTATCTCCACAATGGCTATTCAACGCCTGTGGTGCATTGTGACTTGAAGCC C N G L S P Q W L F N A C G A L - L E A A M D Y L H N G Y S T P V V H C D L K P Q W I I S T M A I Q R L W C I V T - S . . . . . . 112 AAGTAATGTCTTGTTAGATGAAGAAATGGTTGCTCATGTAAGTGATTTTGGCATTGCAAA K - C L V R - R N G C S C K - F W H C K S N V L L D E E M V A H V S D F G I A K Q V M S C - M K K W L L M - V I L A L Q . . . . . . 172 AATGTTAGGTGCAGGGGAGGCTTTTGTTCAAACAAGGACAGTTGCAACCATTGGATATAT N V R C R G G F C S N K D S C N H W I Y M L G A G E A F V Q T R T V A T I G Y I K C - V Q G R L L F K Q G Q L Q P L D I . : . . . . . 232 TGCTCCAG : AGTATGGACAAGATGGAATAGTATCCACGAGTTGTGATGTTTATAGTTTTGG C S R : V W T R W N S I H E L - C L - F W A P : E Y G Q D G I V S T S C D V Y S F G L L Q : S M D K M E - Y P R V V M F I V L . . . . . . 389 CATCCTGATGATGGAGACGTTCACACGAACAAGACCAAGTGATGAGATATTTACTGGAGA H P D D G D V H T N K T K - - D I Y W R I L M M E T F T R T R P S D E I F T G D A S - - W R R S H E Q D Q V M R Y L L E . . . . . . 449 CTTGAGCATACAACGTTGGATTAGTGATTCCTTTCCGGGGGAACTTCACAAGGTGGTAGA L E H T T L D - - F L S G G T S Q G G R L S I Q R W I S D S F P G E L H K V V D T - A Y N V G L V I P F R G N F T R W - . . . . . . 509 TTCTAATTTGGTACAGCCAGGAGAAGAACAAATCGCTGCAAAGATGCAATGTTTGTTATC F - F G T A R R R T N R C K D A M F V I S N L V Q P G E E Q I A A K M Q C L L S I L I W Y S Q E K N K S L Q R C N V C Y . . . . . . 569 TATCATGGAATTAGCTTTGAACTGCACTTTAGTGAGACCTGATGAAAGAATTAGCATGAA Y H G I S F E L H F S E T - - K N - H E I M E L A L N C T L V R P D E R I S M N L S W N - L - T A L - - D L M K E L A - . . . . . . 629 TGATGCTCTTTCAGCACTCAAAAAGATTAGACTACAGCTTGTTAGTAGTCGGCAC - C S F S T Q K D - T T A C - - S A D A L S A L K K I R L Q L V S S R H M M L F Q H S K R L D Y S L L V V G Maximal non-overlapping open reading frames (>= 64 codons): >C06HBa0054K13.1-6+_PGL-1_AGS-1_PPS_1 (53 239,337 683) (frame '2'; 534 bp, 178 residues) 1 AMDYLHNGYS TPVVHCDLKP SNVLLDEEMV AHVSDFGIAK MLGAGEAFVQ TRTVATIGYI 61 APEYGQDGIV STSCDVYSFG ILMMETFTRT RPSDEIFTGD LSIQRWISDS FPGELHKVVD 121 SNLVQPGEEQ IAAKMQCLLS IMELALNCTL VRPDERISMN DALSALKKIR LQLVSSRH AGS-2 (813 1061) SCR (e 0.880) Exon 1 813 1061 ( 249 n); score: 0.880 PGS (813 1061) SGN-E301078- PGS (813 1061) SGN-E301194- 3-phase translation of AGS-2 (+strand): . . . . . . 813 GAGATTTAAAATGCTCAAAACAAGATTGTCTTTTCTTATTTATACTGTTGTGCGGAATTT E I - N A Q N K I V F S Y L Y C C A E F R F K M L K T R L S F L I Y T V V R N L D L K C S K Q D C L F L F I L L C G I . . . . . . 873 GAGATAATACGAGAAAATATATAAACGCGAAAAACAAGACAACATATTTACGTGGTTCAC E I I R E N I - T R K T R Q H I Y V V H R - Y E K I Y K R E K Q D N I F T W F T - D N T R K Y I N A K N K T T Y L R G S . . . . . . 933 CAATAAATTGGCTACGTCCACGGGAAGAGAGGGAGCAGTTTTATTATGGAGAGGCAAAAA Q - I G Y V H G K R G S S F I M E R Q K N K L A T S T G R E G A V L L W R G K N P I N W L R P R E E R E Q F Y Y G E A K . . . . . . 993 CAGAATTACAAAATAGGGTTTGCCATAGCGTCTATATATATATATAGTGTTAAGCTACGC Q N Y K I G F A I A S I Y I Y S V K L R R I T K - G L P - R L Y I Y I V L S Y A T E L Q N R V C H S V Y I Y I - C - A T . 1053 CCTAACAGG P N R L T P - Q Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-2 (-strand): . . . . . . 1061 CCTGTTAGGGCGTAGCTTAACACTATATATATATATAGACGCTATGGCAAACCCTATTTT P V R A - L N T I Y I Y R R Y G K P Y F L L G R S L T L Y I Y I D A M A N P I L C - G V A - H Y I Y I - T L W Q T L F . . . . . . 1001 GTAATTCTGTTTTTGCCTCTCCATAATAAAACTGCTCCCTCTCTTCCCGTGGACGTAGCC V I L F L P L H N K T A P S L P V D V A - F C F C L S I I K L L P L F P W T - P C N S V F A S P - - N C S L S S R G R S . . . . . . 941 AATTTATTGGTGAACCACGTAAATATGTTGTCTTGTTTTTCGCGTTTATATATTTTCTCG N L L V N H V N M L S C F S R L Y I F S I Y W - T T - I C C L V F R V Y I F S R Q F I G E P R K Y V V L F F A F I Y F L . . . . . . 881 TATTATCTCAAATTCCGCACAACAGTATAAATAAGAAAAGACAATCTTGTTTTGAGCATT Y Y L K F R T T V - I R K D N L V L S I I I S N S A Q Q Y K - E K T I L F - A F V L S Q I P H N S I N K K R Q S C F E H . 821 TTAAATCTC L N L - I F K S Maximal non-overlapping open reading frames (>= 64 codons): >C06HBa0054K13.1-6-_PGL-1_AGS-2_PPS_1 (1046 852) (frame '1'; 192 bp, 64 residues) 1 LNTIYIYRRY GKPYFVILFL PLHNKTAPSL PVDVANLLVN HVNMLSCFSR LYIFSYYLKF 61 RTTV- PGL 2 (- strand): 3016 1550 AGS-1 (2357 1550) SCR (e 0.979) Exon 1 2357 1550 ( 808 n); score: 0.979 PGS (2357 1550) SGN-E343338+ 3-phase translation of AGS-1 (-strand): . . . . . . 2357 GTTTCCAAGTTCCAGGGAAGGAAAATCACGTCTGCAAGTTGAAGAAGTCCTTATATGGAC V S K F Q G R K I T S A S - R S P Y M D F P S S R E G K S R L Q V E E V L I W T F Q V P G K E N H V C K L K K S L Y G . . . . . . 2297 TTAAGCAGTCTCCAAGGCAGTGGTACAAAAGGTTTGACAGCTATATGGCGAAGTTGGGCT L S S L Q G S G T K G L T A I W R S W A - A V S K A V V Q K V - Q L Y G E V G L L K Q S P R Q W Y K R F D S Y M A K L G . . . . . . 2237 ATACTCGGAGCTCATATGATTGTTGTGTCTACTACAATAGGCTCAAGGATGATTCGTTCA I L G A H M I V V S T T I G S R M I R S Y S E L I - L L C L L Q - A Q G - F V H Y T R S S Y D C C V Y Y N R L K D D S F . . . . . . 2177 TCTATCTGGTGCTTTATGTAGATGATATGCTGATAGCTGCAAAGAAGAAGTATGACATTC S I W C F M - M I C - - L Q R R S M T F L S G A L C R - Y A D S C K E E V - H S I Y L V L Y V D D M L I A A K K K Y D I . . . . . . 2117 ATAAGCTGAAGGGTTTACTTAGTGCGGAGTTTGAGATGAAGGATCTGGGAGCTGCTCGGA I S - R V Y L V R S L R - R I W E L L G - A E G F T - C G V - D E G S G S C S E H K L K G L L S A E F E M K D L G A A R . . . . . . 2057 AGATTCTAGGGATGGAGATCATTAGAGACAGAGAGAGAAGGAAACTTTTCTTGTCACAGA R F - G W R S L E T E R E G N F S C H R D S R D G D H - R Q R E K E T F L V T E K I L G M E I I R D R E R R K L F L S Q . . . . . . 1997 GAAGCTACATTCAGAAGGTCTTGGCGAGGTTTGGCATGTCTTCATCTAAGCCTATTGATA E A T F R R S W R G L A C L H L S L L I K L H S E G L G E V W H V F I - A Y - - R S Y I Q K V L A R F G M S S S K P I D . . . . . . 1937 ACCCTAGTGCTGCCAATATCCACCTCACTGCCATGTTCGCTCCACAGTCAGAAGAAGAGA T L V L P I S T S L P C S L H S Q K K R P - C C Q Y P P H C H V R S T V R R R E N P S A A N I H L T A M F A P Q S E E E . . . . . . 1877 AGGAGTATATGTCACGAGTCCCTTATGCCAGTGTCGTAGGAAGTTTGATGTATGCTATGG R S I C H E S L M P V S - E V - C M L W G V Y V T S P L C Q C R R K F D V C Y G K E Y M S R V P Y A S V V G S L M Y A M . . . . . . 1817 TCTGTACAAGGCCAGATTTAGCACATGCAGTCAGTGTAGTGAGCAGATTCATGGGACAAC S V Q G Q I - H M Q S V - - A D S W D N L Y K A R F S T C S Q C S E Q I H G T T V C T R P D L A H A V S V V S R F M G Q . . . . . . 1757 CAGGGAGAGAACATTGGCAGGCTGTGAAGAGAATTTTCCGGTACCTTAGAGGTACATCTG Q G E N I G R L - R E F S G T L E V H L R E R T L A G C E E N F P V P - R Y I - P G R E H W Q A V K R I F R Y L R G T S . . . . . . 1697 ACGTTGGTCTCATTTATGGAGGTGATACTCAGTGCTTGGTTACTGGCTATTCTGATTCAG T L V S F M E V I L S A W L L A I L I Q R W S H L W R - Y S V L G Y W L F - F R D V G L I Y G G D T Q C L V T G Y S D S . . . . . . 1637 ACTATGCTGGAGATGTTGACACAAGAAGATCGATGACTGGCTATGTGTTTACCCTTGGAG T M L E M L T Q E D R - L A M C L P L E L C W R C - H K K I D D W L C V Y P W R D Y A G D V D T R R S M T G Y V F T L G . . . 1577 GATCTGTCGTCAGTTGGAAGGTAACTTT D L S S V G R - L I C R Q L E G N F G S V V S W K V T Maximal non-overlapping open reading frames (>= 64 codons): >C06HBa0054K13.1-6-_PGL-2_AGS-1_PPS_1 (2355 1552) (frame '0'; 804 bp, 268 residues) 1 FQVPGKENHV CKLKKSLYGL KQSPRQWYKR FDSYMAKLGY TRSSYDCCVY YNRLKDDSFI 61 YLVLYVDDML IAAKKKYDIH KLKGLLSAEF EMKDLGAARK ILGMEIIRDR ERRKLFLSQR 121 SYIQKVLARF GMSSSKPIDN PSAANIHLTA MFAPQSEEEK EYMSRVPYAS VVGSLMYAMV 181 CTRPDLAHAV SVVSRFMGQP GREHWQAVKR IFRYLRGTSD VGLIYGGDTQ CLVTGYSDSD 241 YAGDVDTRRS MTGYVFTLGG SVVSWKVT 3-phase translation of AGS-1 (+strand): . . . . . . 1550 AAAGTTACCTTCCAACTGACGACAGATCCTCCAAGGGTAAACACATAGCCAGTCATCGAT K V T F Q L T T D P P R V N T - P V I D K L P S N - R Q I L Q G - T H S Q S S I S Y L P T D D R S S K G K H I A S H R . . . . . . 1610 CTTCTTGTGTCAACATCTCCAGCATAGTCTGAATCAGAATAGCCAGTAACCAAGCACTGA L L V S T S P A - S E S E - P V T K H - F L C Q H L Q H S L N Q N S Q - P S T E S S C V N I S S I V - I R I A S N Q A L . . . . . . 1670 GTATCACCTCCATAAATGAGACCAACGTCAGATGTACCTCTAAGGTACCGGAAAATTCTC V S P P - M R P T S D V P L R Y R K I L Y H L H K - D Q R Q M Y L - G T G K F S S I T S I N E T N V R C T S K V P E N S . . . . . . 1730 TTCACAGCCTGCCAATGTTCTCTCCCTGGTTGTCCCATGAATCTGCTCACTACACTGACT F T A C Q C S L P G C P M N L L T T L T S Q P A N V L S L V V P - I C S L H - L L H S L P M F S P W L S H E S A H Y T D . . . . . . 1790 GCATGTGCTAAATCTGGCCTTGTACAGACCATAGCATACATCAAACTTCCTACGACACTG A C A K S G L V Q T I A Y I K L P T T L H V L N L A L Y R P - H T S N F L R H W C M C - I W P C T D H S I H Q T S Y D T . . . . . . 1850 GCATAAGGGACTCGTGACATATACTCCTTCTCTTCTTCTGACTGTGGAGCGAACATGGCA A - G T R D I Y S F S S S D C G A N M A H K G L V T Y T P S L L L T V E R T W Q G I R D S - H I L L L F F - L W S E H G . . . . . . 1910 GTGAGGTGGATATTGGCAGCACTAGGGTTATCAATAGGCTTAGATGAAGACATGCCAAAC V R W I L A A L G L S I G L D E D M P N - G G Y W Q H - G Y Q - A - M K T C Q T S E V D I G S T R V I N R L R - R H A K . . . . . . 1970 CTCGCCAAGACCTTCTGAATGTAGCTTCTCTGTGACAAGAAAAGTTTCCTTCTCTCTCTG L A K T F - M - L L C D K K S F L L S L S P R P S E C S F S V T R K V S F S L C P R Q D L L N V A S L - Q E K F P S L S . . . . . . 2030 TCTCTAATGATCTCCATCCCTAGAATCTTCCGAGCAGCTCCCAGATCCTTCATCTCAAAC S L M I S I P R I F R A A P R S F I S N L - - S P S L E S S E Q L P D P S S Q T V S N D L H P - N L P S S S Q I L H L K . . . . . . 2090 TCCGCACTAAGTAAACCCTTCAGCTTATGAATGTCATACTTCTTCTTTGCAGCTATCAGC S A L S K P F S L - M S Y F F F A A I S P H - V N P S A Y E C H T S S L Q L S A L R T K - T L Q L M N V I L L L C S Y Q . . . . . . 2150 ATATCATCTACATAAAGCACCAGATAGATGAACGAATCATCCTTGAGCCTATTGTAGTAG I S S T - S T R - M N E S S L S L L - - Y H L H K A P D R - T N H P - A Y C S R H I I Y I K H Q I D E R I I L E P I V V . . . . . . 2210 ACACAACAATCATATGAGCTCCGAGTATAGCCCAACTTCGCCATATAGCTGTCAAACCTT T Q Q S Y E L R V - P N F A I - L S N L H N N H M S S E Y S P T S P Y S C Q T F D T T I I - A P S I A Q L R H I A V K P . . . . . . 2270 TTGTACCACTGCCTTGGAGACTGCTTAAGTCCATATAAGGACTTCTTCAACTTGCAGACG L Y H C L G D C L S P Y K D F F N L Q T C T T A L E T A - V H I R T S S T C R R F V P L P W R L L K S I - G L L Q L A D . . . 2330 TGATTTTCCTTCCCTGGAACTTGGAAAC - F S F P G T W K D F P S L E L G N V I F L P W N L E Maximal non-overlapping open reading frames (>= 64 codons): none AGS-2 (3016 2368) SCR (e 0.982) Exon 1 3016 2368 ( 649 n); score: 0.982 PGS (3016 2368) SGN-E539761+ PGS (3015 2631) SGN-E284788+ 3-phase translation of AGS-2 (-strand): . . . . . . 3016 TACGTCAGAAACTGGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAG Y V R N W E S - Q T G G V S S H S E R E T S E T G S L D K Q V E F Q V I Q N E S R Q K L G V L T N R W S F K S F R T R . . . . . . 2956 CGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCACAGACAGAAACTGATATTCCAGA R F K G T - R G G S R A T D R N - Y S R D L K E P E E E D Q E P Q T E T D I P E A I - R N L K R R I K S H R Q K L I F Q . . . . . . 2896 ATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGCCAAGGAGGGTTGGAGT I Y A I R Y P S E Y S S R S A K E G W S S M P S D I H Q S I A Q D R P R R V G V N L C H Q I S I R V - L K I G Q G G L E . . . . . . 2836 TCGGCCACCTACGAGGTGTGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGTTGCTGA S A T Y E V W F - G H G G L C T A G C - R P P T R C G F E D M V G Y A L Q V A E F G H L R G V V L R T W W V M H C R L L . . . . . . 2776 AGAGGTAGATGCATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTCCTGATTCTGA R G R C I - A V Y L Q R S H F K S - F - E V D A S E P S T Y K E A I L S P D S E K R - M H L S R L L T K K P F - V L I L . . . . . . 2716 AAAATGGTTTGCTGCTATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGA K M V C C Y G R - D G V P T Q E S D M G K W F A A M G D E M E S L H K N Q T W D K N G L L L W E M R W S P Y T R I R H G . . . . . . 2656 TCTGGTCATACAGCCTTCGGGGAGAAAGATTATTACTTGCAAATGGGTTTTCAAGAAGAA S G H T A F G E K D Y Y L Q M G F Q E E L V I Q P S G R K I I T C K W V F K K K I W S Y S L R G E R L L L A N G F S R R . . . . . . 2596 GGAAGGGATATCACCAGCAGAAGGAGTCAAGTATATAGCCAGGGTTGTTGCCAGAGGTTT G R D I T S R R S Q V Y S Q G C C Q R F E G I S P A E G V K Y I A R V V A R G F R K G Y H Q Q K E S S I - P G L L P E V . . . . . . 2536 CAACCAAAGAGAGGGAGTGGACTACAATGAGATCTTCTCACCAGTGGTCAGACATACTTC Q P K R G S G L Q - D L L T S G Q T Y F N Q R E G V D Y N E I F S P V V R H T S S T K E R E W T T M R S S H Q W S D I L . . . . . . 2476 CATCCGAGTGTTACTAGCGATAGTTACACATCAGAATCTGGAGCTTGAACAACTTGATGT H P S V T S D S Y T S E S G A - T T - C I R V L L A I V T H Q N L E L E Q L D V P S E C Y - R - L H I R I W S L N N L M . . . . . 2416 GAAGACAGCGTTTCTACATGGAGAGTTGGAGGAAGAGATATACATGACT E D S V S T W R V G G R D I H D K T A F L H G E L E E E I Y M T - R Q R F Y M E S W R K R Y T - Maximal non-overlapping open reading frames (>= 64 codons): >C06HBa0054K13.1-6-_PGL-2_AGS-2_PPS_1 (3015 2368) (frame '2'; 648 bp, 216 residues) 1 TSETGSLDKQ VEFQVIQNES DLKEPEEEDQ EPQTETDIPE SMPSDIHQSI AQDRPRRVGV 61 RPPTRCGFED MVGYALQVAE EVDASEPSTY KEAILSPDSE KWFAAMGDEM ESLHKNQTWD 121 LVIQPSGRKI ITCKWVFKKK EGISPAEGVK YIARVVARGF NQREGVDYNE IFSPVVRHTS 181 IRVLLAIVTH QNLELEQLDV KTAFLHGELE EEIYMT 3-phase translation of AGS-2 (+strand): . . . . . . 2368 AGTCATGTATATCTCTTCCTCCAACTCTCCATGTAGAAACGCTGTCTTCACATCAAGTTG S H V Y L F L Q L S M - K R C L H I K L V M Y I S S S N S P C R N A V F T S S C S C I S L P P T L H V E T L S S H Q V . . . . . . 2428 TTCAAGCTCCAGATTCTGATGTGTAACTATCGCTAGTAACACTCGGATGGAAGTATGTCT F K L Q I L M C N Y R - - H S D G S M S S S S R F - C V T I A S N T R M E V C L V Q A P D S D V - L S L V T L G W K Y V . . . . . . 2488 GACCACTGGTGAGAAGATCTCATTGTAGTCCACTCCCTCTCTTTGGTTGAAACCTCTGGC D H W - E D L I V V H S L S L V E T S G T T G E K I S L - S T P S L W L K P L A - P L V R R S H C S P L P L F G - N L W . . . . . . 2548 AACAACCCTGGCTATATACTTGACTCCTTCTGCTGGTGATATCCCTTCCTTCTTCTTGAA N N P G Y I L D S F C W - Y P F L L L E T T L A I Y L T P S A G D I P S F F L K Q Q P W L Y T - L L L L V I S L P S S - . . . . . . 2608 AACCCATTTGCAAGTAATAATCTTTCTCCCCGAAGGCTGTATGACCAGATCCCATGTCTG N P F A S N N L S P R R L Y D Q I P C L T H L Q V I I F L P E G C M T R S H V - K P I C K - - S F S P K A V - P D P M S . . . . . . 2668 ATTCTTGTGTAGGGACTCCATCTCATCTCCCATAGCAGCAAACCATTTTTCAGAATCAGG I L V - G L H L I S H S S K P F F R I R F L C R D S I S S P I A A N H F S E S G D S C V G T P S H L P - Q Q T I F Q N Q . . . . . . 2728 ACTTAAAATGGCTTCTTTGTAAGTAGACGGCTCAGATGCATCTACCTCTTCAGCAACCTG T - N G F F V S R R L R C I Y L F S N L L K M A S L - V D G S D A S T S S A T C D L K W L L C K - T A Q M H L P L Q Q P . . . . . . 2788 CAGTGCATAACCCACCATGTCCTCAAAACCACACCTCGTAGGTGGCCGAACTCCAACCCT Q C I T H H V L K T T P R R W P N S N P S A - P T M S S K P H L V G G R T P T L A V H N P P C P Q N H T S - V A E L Q P . . . . . . 2848 CCTTGGCCGATCTTGAGCTATACTCTGATGGATATCTGATGGCATAGATTCTGGAATATC P W P I L S Y T L M D I - W H R F W N I L G R S - A I L - W I S D G I D S G I S S L A D L E L Y S D G Y L M A - I L E Y . . . . . . 2908 AGTTTCTGTCTGTGGCTCTTGATCCTCCTCTTCAGGTTCCTTTAAATCGCTCTCGTTCTG S F C L W L L I L L F R F L - I A L V L V S V C G S - S S S S G S F K S L S F - Q F L S V A L D P P L Q V P L N R S R S . . . . . 2968 AATGACTTGAAACTCCACCTGTTTGTCAAGACTCCCAGTTTCTGACGTA N D L K L H L F V K T P S F - R M T - N S T C L S R L P V S D V E - L E T P P V C Q D S Q F L T Maximal non-overlapping open reading frames (>= 64 codons): none ... finished at: Mon Aug 28 22:10:42 2006 ________________________________________________________________________________ Sequence 7: C06HBa0054K13.1-7, from 1 to 5432, both strands analyzed. ... started at: Mon Aug 28 22:10:42 2006 EST library file: /tmp/cxgn-bacpublish-resources-LF1h7Z/sgn_ests; matching gDNA +strand ... ... found all matches, elapsed seconds = 4 ... matches indexed, elapsed seconds = 4 HitsTableSize = 1 EST library file: /tmp/cxgn-bacpublish-resources-LF1h7Z/sgn_ests; matching gDNA -strand ... ... found all matches, elapsed seconds = 3 ... matches indexed, elapsed seconds = 3 HitsTableSize = 0 ******************************************************************************** EST sequence 1 -strand 489 n (File: SGN-E392064-) 1 ACCCCATTCA GTACAAAGCT AAACCAACCC CAGAAGCCAA CAAAGGTGGA CTTGAATTCC 61 GCGGTTTATC CTGGTGGTCC ACCTTCACCA GCAAGAGCGC CAAAGATGTC GCACTTTGTT 121 GATACAACAG AAATGGTAAG AGGTCCCGAG GAGTCCCCTG GTTACTGGGT GGTTACTGGT 181 GCAAAGCTGT GTGTAGAAGA TAGTAGGATA AGAATGAAAG TGAAGTACTC CCTTTTAACC 241 ATACTTACAG AGGAGTCATT GTTGATATAA ACGATTGAAA GATTTCATTT CAAGCTTTAT 301 CCATCTTTCT TTATAGGACA TTGTGTATAT TTCATTTGAT ATTTGCGCAG ATATGCAGAA 361 AGTGTTATAG CAAGGTCAAA TTGACCCAGT TAACAGTTGA GTGTGTAAAG AAATTATAAA 421 ACTTTTGTTG AAAGAAAACG AAGAGTTTCT GAATGTACAT TTAACGTTCC TAAAAAAAAA 481 AAAAAAAAA Predicted gene structure (within gDNA segment 4015 to 615): Exon 1 1665 1366 ( 300 n); cDNA 175 473 ( 299 n); score: 0.963 PPA cDNA 474 489 MATCH C06HBa0054K13.1-7- SGN-E392064- 0.963 300 0.613 C PGS_C06HBa0054K13.1-7-_SGN-E392064- (1665 1366) Alignment (genomic DNA sequence = upper lines): ACTGGTGCAA AGCTGTGTGT AGAAGATAGT AGGATAAGAA TGAAAGTGAA GTACTCCCTC 1606 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| ACTGGTGCAA AGCTGTGTGT AGAAGATAGT AGGATAAGAA TGAAAGTGAA GTACTCCCTT 234 TTAACCATAC TTACAGAGGA GTCATTGTTG ATATAAACGA TCGAAAGATT TCATTTCAAG 1546 |||||||||| |||||||||| |||||||||| |||||||||| | |||||||| |||||||||| TTAACCATAC TTACAGAGGA GTCATTGTTG ATATAAACGA TTGAAAGATT TCATTTCAAG 294 CTTTATCTAT CTTTCTCTAT AGGACATTGT GTAAACTTCA TCTGATATTT GGGCAGATAT 1486 ||||||| || |||||| ||| |||||||||| ||| | |||| | |||||||| | |||||||| CTTTATCCAT CTTTCTTTAT AGGACATTGT GTATATTTCA TTTGATATTT GCGCAGATAT 354 GCAGAAAGTG TTATAGCAAA GGTCAAATTG ACCCAGTTAA CAGTTGAGTG TGTAAAGAAA 1426 |||||||||| ||||||| || |||||||||| |||||||||| |||||||||| |||||||||| GCAGAAAGTG TTATAGC-AA GGTCAAATTG ACCCAGTTAA CAGTTGAGTG TGTAAAGAAA 413 TTATGAAACT TTTGTTGAAA GAAAATGAAG AGTTTCTGAA TGTACATTTA ACGTTCCTAA 1366 |||| ||||| |||||||||| ||||| |||| |||||||||| |||||||||| |||||||||| TTATAAAACT TTTGTTGAAA GAAAACGAAG AGTTTCTGAA TGTACATTTA ACGTTCCTAA 473 hqPGS_C06HBa0054K13.1-7-_SGN-E392064- (1665 1366) Total number of EST alignments reported: 1 ________________________________________________________________________________ Predicted gene locations (1) in segment 1 to 5432: PGL 1 (- strand): 1665 1366 AGS-1 (1665 1366) SCR (e 0.963) Exon 1 1665 1366 ( 300 n); score: 0.963 PGS (1665 1366) SGN-E392064- 3-phase translation of AGS-1 (-strand): . . . . . . 1665 ACTGGTGCAAAGCTGTGTGTAGAAGATAGTAGGATAAGAATGAAAGTGAAGTACTCCCTC T G A K L C V E D S R I R M K V K Y S L L V Q S C V - K I V G - E - K - S T P S W C K A V C R R - - D K N E S E V L P . . . . . . 1605 TTAACCATACTTACAGAGGAGTCATTGTTGATATAAACGATCGAAAGATTTCATTTCAAG L T I L T E E S L L I - T I E R F H F K - P Y L Q R S H C - Y K R S K D F I S S L N H T Y R G V I V D I N D R K I S F Q . . . . . . 1545 CTTTATCTATCTTTCTCTATAGGACATTGTGTAAACTTCATCTGATATTTGGGCAGATAT L Y L S F S I G H C V N F I - Y L G R Y F I Y L S L - D I V - T S S D I W A D M A L S I F L Y R T L C K L H L I F G Q I . . . . . . 1485 GCAGAAAGTGTTATAGCAAAGGTCAAATTGACCCAGTTAACAGTTGAGTGTGTAAAGAAA A E S V I A K V K L T Q L T V E C V K K Q K V L - Q R S N - P S - Q L S V - R N C R K C Y S K G Q I D P V N S - V C K E . . . . . . 1425 TTATGAAACTTTTGTTGAAAGAAAATGAAGAGTTTCTGAATGTACATTTAACGTTCCTAA L - N F C - K K M K S F - M Y I - R S - Y E T F V E R K - R V S E C T F N V P I M K L L L K E N E E F L N V H L T F L Maximal non-overlapping open reading frames (>= 64 codons): >C06HBa0054K13.1-7-_PGL-1_AGS-1_PPS_1 (1633 1439) (frame '0'; 192 bp, 64 residues) 1 DKNESEVLPL NHTYRGVIVD INDRKISFQA LSIFLYRTLC KLHLIFGQIC RKCYSKGQID 61 PVNS- 3-phase translation of AGS-1 (+strand): . . . . . . 1366 TTAGGAACGTTAAATGTACATTCAGAAACTCTTCATTTTCTTTCAACAAAAGTTTCATAA L G T L N V H S E T L H F L S T K V S - - E R - M Y I Q K L F I F F Q Q K F H N R N V K C T F R N S S F S F N K S F I . . . . . . 1426 TTTCTTTACACACTCAACTGTTAACTGGGTCAATTTGACCTTTGCTATAACACTTTCTGC F L Y T L N C - L G Q F D L C Y N T F C F F T H S T V N W V N L T F A I T L S A I S L H T Q L L T G S I - P L L - H F L . . . . . . 1486 ATATCTGCCCAAATATCAGATGAAGTTTACACAATGTCCTATAGAGAAAGATAGATAAAG I S A Q I S D E V Y T M S Y R E R - I K Y L P K Y Q M K F T Q C P I E K D R - S H I C P N I R - S L H N V L - R K I D K . . . . . . 1546 CTTGAAATGAAATCTTTCGATCGTTTATATCAACAATGACTCCTCTGTAAGTATGGTTAA L E M K S F D R L Y Q Q - L L C K Y G - L K - N L S I V Y I N N D S S V S M V K A - N E I F R S F I S T M T P L - V W L . . . . . . 1606 GAGGGAGTACTTCACTTTCATTCTTATCCTACTATCTTCTACACACAGCTTTGCACCAGT E G V L H F H S Y P T I F Y T Q L C T S R E Y F T F I L I L L S S T H S F A P R G S T S L S F L S Y Y L L H T A L H Q Maximal non-overlapping open reading frames (>= 64 codons): none ... finished at: Mon Aug 28 22:10:50 2006 ________________________________________________________________________________ Sequence 8: C06HBa0054K13.1-8, from 1 to 2791, both strands analyzed. ... started at: Mon Aug 28 22:10:50 2006 EST library file: /tmp/cxgn-bacpublish-resources-LF1h7Z/sgn_ests; matching gDNA +strand ... ... found all matches, elapsed seconds = 4 ... matches indexed, elapsed seconds = 4 HitsTableSize = 0 EST library file: /tmp/cxgn-bacpublish-resources-LF1h7Z/sgn_ests; matching gDNA -strand ... ... found all matches, elapsed seconds = 4 ... matches indexed, elapsed seconds = 4 HitsTableSize = 1 ******************************************************************************** EST sequence 1 +strand 553 n (File: SGN-E320376+) 1 GGAAAGATAA TTGGTGGTGG TCCAAGGGCA GGAAATTGAG GTGGGAACCG ATAGTTCAAG 61 CTCAAGAAAT TGGGGTTTTG TTATTGCAAT TGGGGATTGT GATGTTTGTT ATGAGATTAC 121 TAAGACCCGG TTTGCCATTA CCCGGGTCGG ATCCTAGAGC TCCGACAATG TTTGTAACTG 181 TTCCATATAG TGAGTTTTTG AGTAAGATAA ATAGTAATCA GGTGCAGAAA GTTGAGGTTG 241 ATGGTGTACA TATAATGTTC AAATTGAAGA GTGAAGTGAG TAGTAGTGTA ATAGAGACTG 301 AGGTTGTGAA TGTGAATGAA AATGGAAATA GTAAGTTGCA AGATTCTGAG GCAGTGATAA 361 GGAGTGTAAC TCCTACAAAG AAAATTGTGT ATACTACCAC GAGGCCGAGT GATATAAAGA 421 CCCCTTATGA GAAAATGCTT GAGAATGATG TTGAGTTTGG TTCTCCCGAT AAACGGTCTG 481 GTGGATTCAT GAACTCTGCA CTGATAACAT TATTTTATAT TGCTGTACTA GCGGGGCTTC 541 TTCATCGCTT CCC Predicted gene structure (within gDNA segment 2008 to 1): Exon 1 1408 906 ( 503 n); cDNA 1 503 ( 503 n); score: 1.000 MATCH C06HBa0054K13.1-8- SGN-E320376+ 1.000 503 0.910 C PGS_C06HBa0054K13.1-8-_SGN-E320376+ (1408 906) Alignment (genomic DNA sequence = upper lines): GGAAAGATAA TTGGTGGTGG TCCAAGGGCA GGAAATTGAG GTGGGAACCG ATAGTTCAAG 1349 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGAAAGATAA TTGGTGGTGG TCCAAGGGCA GGAAATTGAG GTGGGAACCG ATAGTTCAAG 60 CTCAAGAAAT TGGGGTTTTG TTATTGCAAT TGGGGATTGT GATGTTTGTT ATGAGATTAC 1289 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCAAGAAAT TGGGGTTTTG TTATTGCAAT TGGGGATTGT GATGTTTGTT ATGAGATTAC 120 TAAGACCCGG TTTGCCATTA CCCGGGTCGG ATCCTAGAGC TCCGACAATG TTTGTAACTG 1229 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAAGACCCGG TTTGCCATTA CCCGGGTCGG ATCCTAGAGC TCCGACAATG TTTGTAACTG 180 TTCCATATAG TGAGTTTTTG AGTAAGATAA ATAGTAATCA GGTGCAGAAA GTTGAGGTTG 1169 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCCATATAG TGAGTTTTTG AGTAAGATAA ATAGTAATCA GGTGCAGAAA GTTGAGGTTG 240 ATGGTGTACA TATAATGTTC AAATTGAAGA GTGAAGTGAG TAGTAGTGTA ATAGAGACTG 1109 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGGTGTACA TATAATGTTC AAATTGAAGA GTGAAGTGAG TAGTAGTGTA ATAGAGACTG 300 AGGTTGTGAA TGTGAATGAA AATGGAAATA GTAAGTTGCA AGATTCTGAG GCAGTGATAA 1049 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGTTGTGAA TGTGAATGAA AATGGAAATA GTAAGTTGCA AGATTCTGAG GCAGTGATAA 360 GGAGTGTAAC TCCTACAAAG AAAATTGTGT ATACTACCAC GAGGCCGAGT GATATAAAGA 989 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGAGTGTAAC TCCTACAAAG AAAATTGTGT ATACTACCAC GAGGCCGAGT GATATAAAGA 420 CCCCTTATGA GAAAATGCTT GAGAATGATG TTGAGTTTGG TTCTCCCGAT AAACGGTCTG 929 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCCCTTATGA GAAAATGCTT GAGAATGATG TTGAGTTTGG TTCTCCCGAT AAACGGTCTG 480 GTGGATTCAT GAACTCTGCA CTG 906 |||||||||| |||||||||| ||| GTGGATTCAT GAACTCTGCA CTG 503 hqPGS_C06HBa0054K13.1-8-_SGN-E320376+ (1408 906) Total number of EST alignments reported: 1 ________________________________________________________________________________ Predicted gene locations (1) in segment 1 to 2791: PGL 1 (- strand): 1408 906 AGS-1 (1408 906) SCR (e 1.000) Exon 1 1408 906 ( 503 n); score: 1.000 PGS (1408 906) SGN-E320376+ 3-phase translation of AGS-1 (-strand): . . . . . . 1408 GGAAAGATAATTGGTGGTGGTCCAAGGGCAGGAAATTGAGGTGGGAACCGATAGTTCAAG G K I I G G G P R A G N - G G N R - F K E R - L V V V Q G Q E I E V G T D S S S K D N W W W S K G R K L R W E P I V Q . . . . . . 1348 CTCAAGAAATTGGGGTTTTGTTATTGCAATTGGGGATTGTGATGTTTGTTATGAGATTAC L K K L G F C Y C N W G L - C L L - D Y S R N W G F V I A I G D C D V C Y E I T A Q E I G V L L L Q L G I V M F V M R L . . . . . . 1288 TAAGACCCGGTTTGCCATTACCCGGGTCGGATCCTAGAGCTCCGACAATGTTTGTAACTG - D P V C H Y P G R I L E L R Q C L - L K T R F A I T R V G S - S S D N V C N C L R P G L P L P G S D P R A P T M F V T . . . . . . 1228 TTCCATATAGTGAGTTTTTGAGTAAGATAAATAGTAATCAGGTGCAGAAAGTTGAGGTTG F H I V S F - V R - I V I R C R K L R L S I - - V F E - D K - - S G A E S - G - V P Y S E F L S K I N S N Q V Q K V E V . . . . . . 1168 ATGGTGTACATATAATGTTCAAATTGAAGAGTGAAGTGAGTAGTAGTGTAATAGAGACTG M V Y I - C S N - R V K - V V V - - R L W C T Y N V Q I E E - S E - - C N R D - D G V H I M F K L K S E V S S S V I E T . . . . . . 1108 AGGTTGTGAATGTGAATGAAAATGGAAATAGTAAGTTGCAAGATTCTGAGGCAGTGATAA R L - M - M K M E I V S C K I L R Q - - G C E C E - K W K - - V A R F - G S D K E V V N V N E N G N S K L Q D S E A V I . . . . . . 1048 GGAGTGTAACTCCTACAAAGAAAATTGTGTATACTACCACGAGGCCGAGTGATATAAAGA G V - L L Q R K L C I L P R G R V I - R E C N S Y K E N C V Y Y H E A E - Y K D R S V T P T K K I V Y T T T R P S D I K . . . . . . 988 CCCCTTATGAGAAAATGCTTGAGAATGATGTTGAGTTTGGTTCTCCCGATAAACGGTCTG P L M R K C L R M M L S L V L P I N G L P L - E N A - E - C - V W F S R - T V W T P Y E K M L E N D V E F G S P D K R S . . . 928 GTGGATTCATGAACTCTGCACTG V D S - T L H W I H E L C T G G F M N S A L Maximal non-overlapping open reading frames (>= 64 codons): >C06HBa0054K13.1-8-_PGL-1_AGS-1_PPS_1 (1406 906) (frame '0'; 501 bp, 167 residues) 1 KDNWWWSKGR KLRWEPIVQA QEIGVLLLQL GIVMFVMRLL RPGLPLPGSD PRAPTMFVTV 61 PYSEFLSKIN SNQVQKVEVD GVHIMFKLKS EVSSSVIETE VVNVNENGNS KLQDSEAVIR 121 SVTPTKKIVY TTTRPSDIKT PYEKMLENDV EFGSPDKRSG GFMNSAL 3-phase translation of AGS-1 (+strand): . . . . . . 906 CAGTGCAGAGTTCATGAATCCACCAGACCGTTTATCGGGAGAACCAAACTCAACATCATT Q C R V H E S T R P F I G R T K L N I I S A E F M N P P D R L S G E P N S T S F V Q S S - I H Q T V Y R E N Q T Q H H . . . . . . 966 CTCAAGCATTTTCTCATAAGGGGTCTTTATATCACTCGGCCTCGTGGTAGTATACACAAT L K H F L I R G L Y I T R P R G S I H N S S I F S - G V F I S L G L V V V Y T I S Q A F S H K G S L Y H S A S W - Y T Q . . . . . . 1026 TTTCTTTGTAGGAGTTACACTCCTTATCACTGCCTCAGAATCTTGCAACTTACTATTTCC F L C R S Y T P Y H C L R I L Q L T I S F F V G V T L L I T A S E S C N L L F P F S L - E L H S L S L P Q N L A T Y Y F . . . . . . 1086 ATTTTCATTCACATTCACAACCTCAGTCTCTATTACACTACTACTCACTTCACTCTTCAA I F I H I H N L S L Y Y T T T H F T L Q F S F T F T T S V S I T L L L T S L F N H F H S H S Q P Q S L L H Y Y S L H S S . . . . . . 1146 TTTGAACATTATATGTACACCATCAACCTCAACTTTCTGCACCTGATTACTATTTATCTT F E H Y M Y T I N L N F L H L I T I Y L L N I I C T P S T S T F C T - L L F I L I - T L Y V H H Q P Q L S A P D Y Y L S . . . . . . 1206 ACTCAAAAACTCACTATATGGAACAGTTACAAACATTGTCGGAGCTCTAGGATCCGACCC T Q K L T I W N S Y K H C R S S R I R P L K N S L Y G T V T N I V G A L G S D P Y S K T H Y M E Q L Q T L S E L - D P T . . . . . . 1266 GGGTAATGGCAAACCGGGTCTTAGTAATCTCATAACAAACATCACAATCCCCAATTGCAA G - W Q T G S - - S H N K H H N P Q L Q G N G K P G L S N L I T N I T I P N C N R V M A N R V L V I S - Q T S Q S P I A . . . . . . 1326 TAACAAAACCCCAATTTCTTGAGCTTGAACTATCGGTTCCCACCTCAATTTCCTGCCCTT - Q N P N F L S L N Y R F P P Q F P A L N K T P I S - A - T I G S H L N F L P L I T K P Q F L E L E L S V P T S I S C P . . . 1386 GGACCACCACCAATTATCTTTCC G P P P I I F D H H Q L S F W T T T N Y L S Maximal non-overlapping open reading frames (>= 64 codons): >C06HBa0054K13.1-8+_PGL-1_AGS-1_PPS_1 (906 1271) (frame '1'; 363 bp, 121 residues) 1 QCRVHESTRP FIGRTKLNII LKHFLIRGLY ITRPRGSIHN FLCRSYTPYH CLRILQLTIS 61 IFIHIHNLSL YYTTTHFTLQ FEHYMYTINL NFLHLITIYL TQKLTIWNSY KHCRSSRIRP 121 G- ... finished at: Mon Aug 28 22:10:58 2006 ________________________________________________________________________________ Sequence 9: C06HBa0054K13.1-9, from 1 to 2289, both strands analyzed. ... started at: Mon Aug 28 22:10:58 2006 EST library file: /tmp/cxgn-bacpublish-resources-LF1h7Z/sgn_ests; matching gDNA +strand ... ... found all matches, elapsed seconds = 4 ... matches indexed, elapsed seconds = 4 HitsTableSize = 0 EST library file: /tmp/cxgn-bacpublish-resources-LF1h7Z/sgn_ests; matching gDNA -strand ... ... found all matches, elapsed seconds = 3 ... matches indexed, elapsed seconds = 3 HitsTableSize = 0 No significant EST matches were found. ... finished at: Mon Aug 28 22:11:05 2006 ________________________________________________________________________________ Sequence 10: C06HBa0054K13.1-10, from 1 to 3166, both strands analyzed. ... started at: Mon Aug 28 22:11:05 2006 EST library file: /tmp/cxgn-bacpublish-resources-LF1h7Z/sgn_ests; matching gDNA +strand ... ... found all matches, elapsed seconds = 4 ... matches indexed, elapsed seconds = 4 HitsTableSize = 1 EST library file: /tmp/cxgn-bacpublish-resources-LF1h7Z/sgn_ests; matching gDNA -strand ... ... found all matches, elapsed seconds = 4 ... matches indexed, elapsed seconds = 4 HitsTableSize = 0 ******************************************************************************** EST sequence 1 +strand 555 n (File: SGN-E330721+) 1 ACAAAAGTGT CTGAACTAGG GGAAACTATC ACATTTGCTG ATGTTGCAGG CGTTGACGAG 61 GCTAAGGAGG AGCTAGAAGA AATTGTGGAA TTTCTTAGAA ATCCAGATAA GTATGTACGG 121 CTTGGTGCAC GTCCTCCTCG TGGTGTTCTA CTGGTTGGTC TCCCCGGGAC AGGAAAGACA 181 CTTCTAGCAA AGGCTGTTGC TGGGGAAGCT GAGGTTCCTT TTATCAGTTG TTCTGCAAGT 241 GAGTTTGTAG AATTGTATGT AGGAATGGGA GCATCACGCG TCCGTGACCT GTTTGCACGG 301 GCAAAGAAGG AGGCACCTTC AATAATTTTT ATCGATGAGA TAGATGCTGT GGCAAAAAGC 361 CGTGATGGAA AATTCCGCAT TGTAAGCAAT GATGAAAGAG AGCAGACATT GAACCAACTA 421 CTCACTGAGA TGGACGGATT TGACAGTAAT TCTGCTGTAA TTGTTCTTGG AACAACAAAT 481 CGCTCTGATG TCTTAGACCC TGCTCTTCGC CGACCTGGGA GATTTGACCG TGTTGTAATG 541 GTGGAAGCGC CTGAT Predicted gene structure (within gDNA segment 1184 to 3166): Exon 1 1784 1870 ( 87 n); cDNA 1 87 ( 87 n); score: 1.000 Intron 1 1871 2003 ( 133 n); Pd: 0.995 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 2 2004 2069 ( 66 n); cDNA 88 153 ( 66 n); score: 1.000 Intron 2 2070 2408 ( 339 n); Pd: 0.981 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 3 2409 2594 ( 186 n); cDNA 154 339 ( 186 n); score: 1.000 Intron 3 2595 2748 ( 154 n); Pd: 0.950 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 4 2749 2835 ( 87 n); cDNA 340 426 ( 87 n); score: 1.000 Intron 4 2836 2912 ( 77 n); Pd: 0.882 (s: 1.00), Pa: 0.992 (s: 0.98) Exon 5 2913 3026 ( 114 n); cDNA 427 540 ( 114 n); score: 0.991 MATCH C06HBa0054K13.1-10+ SGN-E330721+ 0.998 540 0.973 C PGS_C06HBa0054K13.1-10+_SGN-E330721+ (1784 1870,2004 2069,2409 2594,2749 2835,2913 3026) Alignment (genomic DNA sequence = upper lines): ACAAAAGTGT CTGAACTAGG GGAAACTATC ACATTTGCTG ATGTTGCAGG CGTTGACGAG 1843 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACAAAAGTGT CTGAACTAGG GGAAACTATC ACATTTGCTG ATGTTGCAGG CGTTGACGAG 60 GCTAAGGAGG AGCTAGAAGA AATTGTGGTA TTTTTTATTT TCATTGGTGA ACGTTTCTTA 1903 |||||||||| |||||||||| ||||||| GCTAAGGAGG AGCTAGAAGA AATTGTG... .......... .......... .......... 87 ACAACATATC TGCTATAAGT GCTGCATTTT GATACCATAA GAAGTTGATG AACAGTTAAT 1963 .......... .......... .......... .......... .......... .......... 87 AATTCATTGT TGTGGTGTTT TTAATTGCTT TTTTCCCCAG GAATTTCTTA GAAATCCAGA 2023 |||||||||| |||||||||| .......... .......... .......... .......... GAATTTCTTA GAAATCCAGA 107 TAAGTATGTA CGGCTTGGTG CACGTCCTCC TCGTGGTGTT CTACTGGTGA GTTTCAAATT 2083 |||||||||| |||||||||| |||||||||| |||||||||| |||||| TAAGTATGTA CGGCTTGGTG CACGTCCTCC TCGTGGTGTT CTACTG.... .......... 153 TGACGTAGTA ATGTGAATGC TAGGTGGTTA TCAAAGTGAG AAAGCTTTGA GAATAATGTA 2143 .......... .......... .......... .......... .......... .......... 153 CAATAATTGG AGGGTTCGAA TAGTAACTCA TTGAAACTTC TGATCTTTTG TTCTTGGTTT 2203 .......... .......... .......... .......... .......... .......... 153 TTTTCCTGTT TCTGAAGGGA TTCTCTCTCT ATCCCTTCAT GTCACTTTGT GATGCCTCTA 2263 .......... .......... .......... .......... .......... .......... 153 TGGTCAAATC ACATCATTAT TTCCTGCTAG TTTTGTTATG CGACTATTGA CTGTCAGACC 2323 .......... .......... .......... .......... .......... .......... 153 ATTCTACTTG GGGACACCAT TTGATTAGTT TTATGCTTTG TGATTCTCAA TGTTTAGATT 2383 .......... .......... .......... .......... .......... .......... 153 ATAAAAATGG CTTTAATTGT TACAGGTTGG TCTCCCCGGG ACAGGAAAGA CACTTCTAGC 2443 ||||| |||||||||| |||||||||| |||||||||| .......... .......... .....GTTGG TCTCCCCGGG ACAGGAAAGA CACTTCTAGC 188 AAAGGCTGTT GCTGGGGAAG CTGAGGTTCC TTTTATCAGT TGTTCTGCAA GTGAGTTTGT 2503 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAGGCTGTT GCTGGGGAAG CTGAGGTTCC TTTTATCAGT TGTTCTGCAA GTGAGTTTGT 248 AGAATTGTAT GTAGGAATGG GAGCATCACG CGTCCGTGAC CTGTTTGCAC GGGCAAAGAA 2563 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAATTGTAT GTAGGAATGG GAGCATCACG CGTCCGTGAC CTGTTTGCAC GGGCAAAGAA 308 GGAGGCACCT TCAATAATTT TTATCGATGA GGTCACCTGT GCTTTCCTCC TCTTCTTCTT 2623 |||||||||| |||||||||| |||||||||| | GGAGGCACCT TCAATAATTT TTATCGATGA G......... .......... .......... 339 CCTCTACAAA CTCAAAATAT TCCAATAAAA AGTGTCATCA TCATCTGGAT GTGCAGACCT 2683 .......... .......... .......... .......... .......... .......... 339 CCTCTTCTTT CTCTACAAAC TCAAAATATT CTAAAAAAAA GTGTCATCAT TTTCTGGATG 2743 .......... .......... .......... .......... .......... .......... 339 TGCAGATAGA TGCTGTGGCA AAAAGCCGTG ATGGAAAATT CCGCATTGTA AGCAATGATG 2803 ||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .....ATAGA TGCTGTGGCA AAAAGCCGTG ATGGAAAATT CCGCATTGTA AGCAATGATG 394 AAAGAGAGCA GACATTGAAC CAACTACTCA CTGTAAGACA TACTGGTTTT GTGGTGCTGC 2863 |||||||||| |||||||||| |||||||||| || AAAGAGAGCA GACATTGAAC CAACTACTCA CT........ .......... .......... 426 ATCACTTCAG TTTTTTCATA AGAAACTAAT ATCTTACAAT AATCTGCAGG AGATGGACGG 2923 | |||||||||| .......... .......... .......... .......... .........G AGATGGACGG 437 ATTTGACAGT AATTCTGCTG TAATTGTTCT TGGAGCAACA AATCGCTCTG ATGTCTTAGA 2983 |||||||||| |||||||||| |||||||||| |||| ||||| |||||||||| |||||||||| ATTTGACAGT AATTCTGCTG TAATTGTTCT TGGAACAACA AATCGCTCTG ATGTCTTAGA 497 CCCTGCTCTT CGCCGACCTG GGAGATTTGA CCGTGTTGTA ATG 3026 |||||||||| |||||||||| |||||||||| |||||||||| ||| CCCTGCTCTT CGCCGACCTG GGAGATTTGA CCGTGTTGTA ATG 540 hqPGS_C06HBa0054K13.1-10+_SGN-E330721+ (1784 1870,2004 2069,2409 2594,2749 2835,2913 3026) Total number of EST alignments reported: 1 ________________________________________________________________________________ Predicted gene locations (1) in segment 1 to 3166: PGL 1 (+ strand): 1784 3026 AGS-1 (1784 1870,2004 2069,2409 2594,2749 2835,2913 3026) SCR (e 1.000 d 0.995 a 0.998,e 1.000 d 0.981 a 1.000,e 1.000 d 0.950 a 0.998,e 1.000 d 0.882 a 0.992,e 0.991) Exon 1 1784 1870 ( 87 n); score: 1.000 Intron 1 1871 2003 ( 133 n); Pd: 0.995 Pa: 0.998 Exon 2 2004 2069 ( 66 n); score: 1.000 Intron 2 2070 2408 ( 339 n); Pd: 0.981 Pa: 1.000 Exon 3 2409 2594 ( 186 n); score: 1.000 Intron 3 2595 2748 ( 154 n); Pd: 0.950 Pa: 0.998 Exon 4 2749 2835 ( 87 n); score: 1.000 Intron 4 2836 2912 ( 77 n); Pd: 0.882 Pa: 0.992 Exon 5 2913 3026 ( 114 n); score: 0.991 PGS (1784 1870,2004 2069,2409 2594,2749 2835,2913 3026) SGN-E330721+ 3-phase translation of AGS-1 (+strand): . . . . . . 1784 ACAAAAGTGTCTGAACTAGGGGAAACTATCACATTTGCTGATGTTGCAGGCGTTGACGAG T K V S E L G E T I T F A D V A G V D E Q K C L N - G K L S H L L M L Q A L T R K S V - T R G N Y H I C - C C R R - R . . . : . . . 1844 GCTAAGGAGGAGCTAGAAGAAATTGTG : GAATTTCTTAGAAATCCAGATAAGTATGTACGG A K E E L E E I V : E F L R N P D K Y V R L R R S - K K L W : N F L E I Q I S M Y G G - G G A R R N C : G I S - K S R - V C T . . . . : . . 2037 CTTGGTGCACGTCCTCCTCGTGGTGTTCTACTG : GTTGGTCTCCCCGGGACAGGAAAGACA L G A R P P R G V L L : V G L P G T G K T L V H V L L V V F Y W : L V S P G Q E R H A W C T S S S W C S T : G W S P R D R K D . . . . . . 2436 CTTCTAGCAAAGGCTGTTGCTGGGGAAGCTGAGGTTCCTTTTATCAGTTGTTCTGCAAGT L L A K A V A G E A E V P F I S C S A S F - Q R L L L G K L R F L L S V V L Q V T S S K G C C W G S - G S F Y Q L F C K . . . . . . 2496 GAGTTTGTAGAATTGTATGTAGGAATGGGAGCATCACGCGTCCGTGACCTGTTTGCACGG E F V E L Y V G M G A S R V R D L F A R S L - N C M - E W E H H A S V T C L H G - V C R I V C R N G S I T R P - P V C T . . . . : . . 2556 GCAAAGAAGGAGGCACCTTCAATAATTTTTATCGATGAG : ATAGATGCTGTGGCAAAAAGC A K K E A P S I I F I D E : I D A V A K S Q R R R H L Q - F L S M R : - M L W Q K A G K E G G T F N N F Y R - : D R C C G K K . . . . . . 2770 CGTGATGGAAAATTCCGCATTGTAAGCAATGATGAAAGAGAGCAGACATTGAACCAACTA R D G K F R I V S N D E R E Q T L N Q L V M E N S A L - A M M K E S R H - T N Y P - W K I P H C K Q - - K R A D I E P T . : . . . . . 2830 CTCACT : GAGATGGACGGATTTGACAGTAATTCTGCTGTAATTGTTCTTGGAGCAACAAAT L T : E M D G F D S N S A V I V L G A T N S L : R W T D L T V I L L - L F L E Q Q I T H : - D G R I - Q - F C C N C S W S N K . . . . . . 2967 CGCTCTGATGTCTTAGACCCTGCTCTTCGCCGACCTGGGAGATTTGACCGTGTTGTAATG R S D V L D P A L R R P G R F D R V V M A L M S - T L L F A D L G D L T V L - S L - C L R P C S S P T W E I - P C C N Maximal non-overlapping open reading frames (>= 64 codons): >C06HBa0054K13.1-10+_PGL-1_AGS-1_PPS_1 (1784 1870,2004 2069,2409 2594,2749 2835,2913 3026) (frame '1'; 540 bp, 180 residues) 1 TKVSELGETI TFADVAGVDE AKEELEEIVE FLRNPDKYVR LGARPPRGVL LVGLPGTGKT 61 LLAKAVAGEA EVPFISCSAS EFVELYVGMG ASRVRDLFAR AKKEAPSIIF IDEIDAVAKS 121 RDGKFRIVSN DEREQTLNQL LTEMDGFDSN SAVIVLGATN RSDVLDPALR RPGRFDRVVM ... finished at: Mon Aug 28 22:11:13 2006 ________________________________________________________________________________ Sequence 11: C06HBa0054K13.1-11, from 1 to 4982, both strands analyzed. ... started at: Mon Aug 28 22:11:13 2006 EST library file: /tmp/cxgn-bacpublish-resources-LF1h7Z/sgn_ests; matching gDNA +strand ... ... found all matches, elapsed seconds = 4 ... matches indexed, elapsed seconds = 4 HitsTableSize = 124 EST library file: /tmp/cxgn-bacpublish-resources-LF1h7Z/sgn_ests; matching gDNA -strand ... ... found all matches, elapsed seconds = 4 ... matches indexed, elapsed seconds = 4 HitsTableSize = 3 ******************************************************************************** EST sequence 24 +strand 752 n (File: SGN-E315100+) 1 TTCAGACAAA AATGGCAAAG AGTGGCATTT TGGTAATTGT TTCAGCTCTT GTTGTTCTTG 61 CAGTTTGTGG TGTTTTTGCT GAGGAGAACG AATATGTGTT GACTTTGGAC CATTCTAACC 121 TCACTGAGAC TGTTGCTAAG CACAACTTCA TTGTTGTTGA ATTCTATGCA CCTTGGTGTG 181 GACACTGTAA GAGTCTTGCT CCTGAGTATG AAAAAGCTGC CTCAGAGCTG AGTAGTCATG 241 ACCCTCCAAT TGTTCTAGCT AAGTATGATG CAAATGATGA AGCCAATAGA GAACTTTCAA 301 AACAGTACGA GATCCAGGGT TTCCCAACTA TTAAGATATT GAGAGATGGA GGAAAGAAAG 361 TTCAAGACTA TAACGGTCCT CGTGAAGCAG CTGGTATTGT ATCCTACTTG AAGAAACAAG 421 TGGGTCCTGC ATCTGCTGAA ATCAAGTCGA AGGAAGATGC CACAAACCTT ATTGATGAGA 481 AAAGTATCTT TGTTGTTGGT ATATTTCCAG ACCCCTCCGG AGAGAAATTC GAGAACTATT 541 TAACGCTAGC TGAAAAACTG CGAGGCGAGT TCGATTTTGC TCACACTGTT GATGCTAAAC 601 ACCTCCCTCG GGGTGGACCA GTCAACAAGC CCACTCTTCG TCTTCTAAAG CCATTTGATG 661 AACTCTTTGT TGATTTTGAG GACTTTGATG TCGATGCAAT GGAGAAGTCA TCTCAGAATC 721 TAGTATTCCT GTTGGTACTA TTTTTGACAT GA Predicted gene structure (within gDNA segment 1018 to 4654): Exon 1 1618 1792 ( 175 n); cDNA 1 175 ( 175 n); score: 1.000 Intron 1 1793 2968 (1176 n); Pd: 1.000 (s: 1.00), Pa: 0.997 (s: 0) Exon 2 2969 2999 ( 31 n); cDNA 176 206 ( 31 n); score: 1.000 Intron 2 3000 3122 ( 123 n); Pd: 0.917 (s: 0), Pa: 0.997 (s: 1.00) Exon 3 3123 3410 ( 288 n); cDNA 207 494 ( 288 n); score: 1.000 Intron 3 3411 3508 ( 98 n); Pd: 0.907 (s: 1.00), Pa: 0.997 (s: 1.00) Exon 4 3509 3694 ( 186 n); cDNA 495 680 ( 186 n); score: 1.000 Intron 4 3695 3809 ( 115 n); Pd: 0.988 (s: 1.00), Pa: 0.999 (s: 0.98) Exon 5 3810 3878 ( 69 n); cDNA 681 748 ( 68 n); score: 0.971 MATCH C06HBa0054K13.1-11+ SGN-E315100+ 0.997 749 0.996 C PGS_C06HBa0054K13.1-11+_SGN-E315100+ (1618 1792,2969 2999,3123 3410,3509 3694,3810 3878) Alignment (genomic DNA sequence = upper lines): TTCAGACAAA AATGGCAAAG AGTGGCATTT TGGTAATTGT TTCAGCTCTT GTTGTTCTTG 1677 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCAGACAAA AATGGCAAAG AGTGGCATTT TGGTAATTGT TTCAGCTCTT GTTGTTCTTG 60 CAGTTTGTGG TGTTTTTGCT GAGGAGAACG AATATGTGTT GACTTTGGAC CATTCTAACC 1737 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAGTTTGTGG TGTTTTTGCT GAGGAGAACG AATATGTGTT GACTTTGGAC CATTCTAACC 120 TCACTGAGAC TGTTGCTAAG CACAACTTCA TTGTTGTTGA ATTCTATGCA CCTTGGTAAG 1797 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||| TCACTGAGAC TGTTGCTAAG CACAACTTCA TTGTTGTTGA ATTCTATGCA CCTTG..... 175 TCATCTGCTG TTTTTTTTTC TATTTATTTT CTTGAAAAAA GTTCATTTTT TTTGCTTGTT 1857 .......... .......... .......... .......... .......... .......... 175 GAATCTGTAT GTGCAGAATG TAATGAATGA TTGGATGTAA GGGGTTTTGT TTTTGATCTG 1917 .......... .......... .......... .......... .......... .......... 175 TTTTTTTTTT GTTATTTTAG TGAATTTTTG CTGTAATTTT TTTGTTTTCA TAAGCTGTGT 1977 .......... .......... .......... .......... .......... .......... 175 GAGGAATGCA TCAAGATCAG TTCTTTATGT TAATTTGTCT TAAAGGGTTC ATCAAGGACC 2037 .......... .......... .......... .......... .......... .......... 175 CCTTTGGCTC TACTTTGCTG TTCCTGTTTT TTTTTTTTTT TTGGAGTTTT ATCTTTTTGC 2097 .......... .......... .......... .......... .......... .......... 175 TGGTTTCTCT GGCTTTAGAA ACTGCATGTG CAGAAGATAA TCAATGACTG GTTCTTTTTC 2157 .......... .......... .......... .......... .......... .......... 175 TTTTGGGGAA TTTAAGGTTT TGTTATGTAA ATGGTTTTTT TTTCTGATTT TTCTGCTGTA 2217 .......... .......... .......... .......... .......... .......... 175 ATTTTTTATT TTACACATTG ACTTGAATTT GTCTGAAAGG GTTTTTCAAG GATCCTTTTG 2277 .......... .......... .......... .......... .......... .......... 175 TTGATGGATG TATTTTGATT TGTGGATTGA TTGAGGTTTT AAGGCTTTTT CTGTAAAAAG 2337 .......... .......... .......... .......... .......... .......... 175 CTTCTTCTTT TAATTCATGG TTGATGCTTC TAGAATCTGG ATTTGCTTGA TGAGTTCTAG 2397 .......... .......... .......... .......... .......... .......... 175 GTTATAAGGT TTCCTCTTTT TATTTAATTT GCTGCTTGTT TTTTGGTATT TAAAATCTCT 2457 .......... .......... .......... .......... .......... .......... 175 GTGTCCAGAA TTTTACAAAA ATATTAATAA ATCTGGATTT GTCTTTGTGT TCTGTGTTGC 2517 .......... .......... .......... .......... .......... .......... 175 TGCAAGTTAA TGGTTTTTCC ATTTCTGTGA CAGTCTAGTC AATTGGAATG TAAAATCTGT 2577 .......... .......... .......... .......... .......... .......... 175 TTTTCTATTT TTGTGTATGT ATTTGGATCT ATGTCAAGAG GTTCCAGTGA TCTGTGTTAA 2637 .......... .......... .......... .......... .......... .......... 175 TAGAAGTGAT TCTTTTAGCC AAATTGTCTT CTTGTTATGT GTAGTGGTGG ATCCAATGTA 2697 .......... .......... .......... .......... .......... .......... 175 ATGGTACCAG GTTCATCTGA ACCTAATAGT TTCGACTCGG AGCATAAATT TATGTGTAGG 2757 .......... .......... .......... .......... .......... .......... 175 AATTCACTAA AATTGCAATA AATAGTAGAC ATGAATGATG TTGATGACGA CATGCTTGAG 2817 .......... .......... .......... .......... .......... .......... 175 ATGGTTGTAT TAATAGCTTG CATTAGTTTC GATCTTTTCT ATGGTATCAA TTCCCATAGT 2877 .......... .......... .......... .......... .......... .......... 175 TATACGTTGT TGTCGAAATG TTTATTTAGT TATTCTTTGA CATGAAATTT TTTTACTTTA 2937 .......... .......... .......... .......... .......... .......... 175 TGAGTAACTG ATAATATACT TGCAATTACA GGTGTGGACA CTGTAAGAGT CTTGCTCCTG 2997 ||||||||| |||||||||| |||||||||| .......... .......... .......... .GTGTGGACA CTGTAAGAGT CTTGCTCCTG 204 AGGTACACTT TCTTCTATAC AGTGCTTAAT GAAGGAAGGA ATATCATTTT TCTCTGTCAT 3057 || AG........ .......... .......... .......... .......... .......... 206 TATGTTTTTT CTTGGCATTT TCAATCTATG CAACTGATTT AATGTTAAAT TATGTTTCTT 3117 .......... .......... .......... .......... .......... .......... 206 TCCAGTATGA AAAAGCTGCC TCAGAGCTGA GTAGTCATGA CCCTCCAATT GTTCTAGCTA 3177 ||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .....TATGA AAAAGCTGCC TCAGAGCTGA GTAGTCATGA CCCTCCAATT GTTCTAGCTA 261 AGTATGATGC AAATGATGAA GCCAATAGAG AACTTTCAAA ACAGTACGAG ATCCAGGGTT 3237 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTATGATGC AAATGATGAA GCCAATAGAG AACTTTCAAA ACAGTACGAG ATCCAGGGTT 321 TCCCAACTAT TAAGATATTG AGAGATGGAG GAAAGAAAGT TCAAGACTAT AACGGTCCTC 3297 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCCCAACTAT TAAGATATTG AGAGATGGAG GAAAGAAAGT TCAAGACTAT AACGGTCCTC 381 GTGAAGCAGC TGGTATTGTA TCCTACTTGA AGAAACAAGT GGGTCCTGCA TCTGCTGAAA 3357 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGAAGCAGC TGGTATTGTA TCCTACTTGA AGAAACAAGT GGGTCCTGCA TCTGCTGAAA 441 TCAAGTCGAA GGAAGATGCC ACAAACCTTA TTGATGAGAA AAGTATCTTT GTTGTAAGTG 3417 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||| TCAAGTCGAA GGAAGATGCC ACAAACCTTA TTGATGAGAA AAGTATCTTT GTT....... 494 GTGATACTTT TGATGTTTTA CTTATCATTA CTGAAGTTTA TTTTCAGCAT GCCATAGCTT 3477 .......... .......... .......... .......... .......... .......... 494 CTTGCTGTCT AAAATCTTTC TGTTTCTTTA GGTTGGTATA TTTCCAGACC CCTCCGGAGA 3537 ||||||||| |||||||||| |||||||||| .......... .......... .......... .GTTGGTATA TTTCCAGACC CCTCCGGAGA 523 GAAATTCGAG AACTATTTAA CGCTAGCTGA AAAACTGCGA GGCGAGTTCG ATTTTGCTCA 3597 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAATTCGAG AACTATTTAA CGCTAGCTGA AAAACTGCGA GGCGAGTTCG ATTTTGCTCA 583 CACTGTTGAT GCTAAACACC TCCCTCGGGG TGGACCAGTC AACAAGCCCA CTCTTCGTCT 3657 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CACTGTTGAT GCTAAACACC TCCCTCGGGG TGGACCAGTC AACAAGCCCA CTCTTCGTCT 643 TCTAAAGCCA TTTGATGAAC TCTTTGTTGA TTTTGAGGTA TTACAGTTAT CTGTGTATAT 3717 |||||||||| |||||||||| |||||||||| ||||||| TCTAAAGCCA TTTGATGAAC TCTTTGTTGA TTTTGAG... .......... .......... 680 TTTTATCTTT GATACTCATT GTATTATGGT TATGAGGCTC AACTCTGTCC TATGTTATCT 3777 .......... .......... .......... .......... .......... .......... 680 TTTAATTGGC CATTGATTGT ACATACTTGC AGGACTTTGA TGTCGATGCA ATGGAGAAGT 3837 |||||||| |||||||||| ||||||||| .......... .......... .......... ..GACTTTGA TGTCGATGCA ATGGAGAAG- 707 TCATCTCAGA ATCTAGTATT CCTGTTGTTA CTATTTTTGA C 3878 |||||||||| |||||||||| ||||||| || |||||||||| | TCATCTCAGA ATCTAGTATT CCTGTTGGTA CTATTTTTGA C 748 hqPGS_C06HBa0054K13.1-11+_SGN-E315100+ (1618 1792,2969 2999,3123 3410,3509 3694,3810 3878) ******************************************************************************** EST sequence 48 +strand 690 n (File: SGN-E328714+) 1 TTCAGACAAA AATGGCAAAG AGTGGCATTT TGGTAATTGT TTCAGCTCTT GTTGTTCTTG 61 CAGTTTGTGG TGTTTTTGCT GAGGAGAACG AATATGTGTT GACTTTGGAC CATTCTAACC 121 TCACTGAGAC TGTTGCTAAG CACAACTTCA TTGTTGTTGA ATTCTATGCA CCTTGGTGTG 181 GACACTGTAA GAGTCTTGCT CCTGAGTATG AAAAAGCTGC CTCAGAGCTG AGTAGTCATG 241 ACCCTCCAAT TGTTCTAGCT AAGTATGATG CAAATGATGA AGCCAATAGA GAACTTTCAA 301 AACAGTACGA GATCCAGGGT TTCCCAACTA TTAAGATATT GAGAGATGGA GGAAAGAAAG 361 TTCAAGACTA TAACGGTCCT CGTGAAGCAG CTGGTATTGT ATCCTACTTG AAGAAACAAG 421 TGGGTCCTGC ATCTGCTGAA ATCAAGTCGA AGGAAGATGC CACAAACCTT ATTGATGAGA 481 AAAGTATCTT TGTTGTTGGT ATATTTCCAG ACCCCTCCGG AGAGAAATTC GAGAACTATT 541 TAACGCTAGC TGAAAAACTG CGAGGCGAGT TCGATTTTGC TCACACTGTT GATGCTAAAC 601 ACCTCCCTCG GGGTGGACCA GTCAACAAGC CCACTCTTCG TCTTCTAAGC CATTTGATGA 661 ACTCTTTGTT GATTTTGAGG ACTTTGATGT Predicted gene structure (within gDNA segment 1018 to 4405): Exon 1 1618 1792 ( 175 n); cDNA 1 175 ( 175 n); score: 1.000 Intron 1 1793 2968 (1176 n); Pd: 1.000 (s: 1.00), Pa: 0.997 (s: 0) Exon 2 2969 2999 ( 31 n); cDNA 176 206 ( 31 n); score: 1.000 Intron 2 3000 3122 ( 123 n); Pd: 0.917 (s: 0), Pa: 0.997 (s: 1.00) Exon 3 3123 3410 ( 288 n); cDNA 207 494 ( 288 n); score: 1.000 Intron 3 3411 3508 ( 98 n); Pd: 0.907 (s: 1.00), Pa: 0.997 (s: 1.00) Exon 4 3509 3694 ( 186 n); cDNA 495 679 ( 185 n); score: 0.995 Intron 4 3695 3809 ( 115 n); Pd: 0.988 (s: 0.98), Pa: 0.999 (s: 0) Exon 5 3810 3820 ( 11 n); cDNA 680 690 ( 11 n); score: 1.000 MATCH C06HBa0054K13.1-11+ SGN-E328714+ 0.998 691 1.001 C PGS_C06HBa0054K13.1-11+_SGN-E328714+ (1618 1792,2969 2999,3123 3410,3509 3694,3810 3820) Alignment (genomic DNA sequence = upper lines): TTCAGACAAA AATGGCAAAG AGTGGCATTT TGGTAATTGT TTCAGCTCTT GTTGTTCTTG 1677 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCAGACAAA AATGGCAAAG AGTGGCATTT TGGTAATTGT TTCAGCTCTT GTTGTTCTTG 60 CAGTTTGTGG TGTTTTTGCT GAGGAGAACG AATATGTGTT GACTTTGGAC CATTCTAACC 1737 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAGTTTGTGG TGTTTTTGCT GAGGAGAACG AATATGTGTT GACTTTGGAC CATTCTAACC 120 TCACTGAGAC TGTTGCTAAG CACAACTTCA TTGTTGTTGA ATTCTATGCA CCTTGGTAAG 1797 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||| TCACTGAGAC TGTTGCTAAG CACAACTTCA TTGTTGTTGA ATTCTATGCA CCTTG..... 175 TCATCTGCTG TTTTTTTTTC TATTTATTTT CTTGAAAAAA GTTCATTTTT TTTGCTTGTT 1857 .......... .......... .......... .......... .......... .......... 175 GAATCTGTAT GTGCAGAATG TAATGAATGA TTGGATGTAA GGGGTTTTGT TTTTGATCTG 1917 .......... .......... .......... .......... .......... .......... 175 TTTTTTTTTT GTTATTTTAG TGAATTTTTG CTGTAATTTT TTTGTTTTCA TAAGCTGTGT 1977 .......... .......... .......... .......... .......... .......... 175 GAGGAATGCA TCAAGATCAG TTCTTTATGT TAATTTGTCT TAAAGGGTTC ATCAAGGACC 2037 .......... .......... .......... .......... .......... .......... 175 CCTTTGGCTC TACTTTGCTG TTCCTGTTTT TTTTTTTTTT TTGGAGTTTT ATCTTTTTGC 2097 .......... .......... .......... .......... .......... .......... 175 TGGTTTCTCT GGCTTTAGAA ACTGCATGTG CAGAAGATAA TCAATGACTG GTTCTTTTTC 2157 .......... .......... .......... .......... .......... .......... 175 TTTTGGGGAA TTTAAGGTTT TGTTATGTAA ATGGTTTTTT TTTCTGATTT TTCTGCTGTA 2217 .......... .......... .......... .......... .......... .......... 175 ATTTTTTATT TTACACATTG ACTTGAATTT GTCTGAAAGG GTTTTTCAAG GATCCTTTTG 2277 .......... .......... .......... .......... .......... .......... 175 TTGATGGATG TATTTTGATT TGTGGATTGA TTGAGGTTTT AAGGCTTTTT CTGTAAAAAG 2337 .......... .......... .......... .......... .......... .......... 175 CTTCTTCTTT TAATTCATGG TTGATGCTTC TAGAATCTGG ATTTGCTTGA TGAGTTCTAG 2397 .......... .......... .......... .......... .......... .......... 175 GTTATAAGGT TTCCTCTTTT TATTTAATTT GCTGCTTGTT TTTTGGTATT TAAAATCTCT 2457 .......... .......... .......... .......... .......... .......... 175 GTGTCCAGAA TTTTACAAAA ATATTAATAA ATCTGGATTT GTCTTTGTGT TCTGTGTTGC 2517 .......... .......... .......... .......... .......... .......... 175 TGCAAGTTAA TGGTTTTTCC ATTTCTGTGA CAGTCTAGTC AATTGGAATG TAAAATCTGT 2577 .......... .......... .......... .......... .......... .......... 175 TTTTCTATTT TTGTGTATGT ATTTGGATCT ATGTCAAGAG GTTCCAGTGA TCTGTGTTAA 2637 .......... .......... .......... .......... .......... .......... 175 TAGAAGTGAT TCTTTTAGCC AAATTGTCTT CTTGTTATGT GTAGTGGTGG ATCCAATGTA 2697 .......... .......... .......... .......... .......... .......... 175 ATGGTACCAG GTTCATCTGA ACCTAATAGT TTCGACTCGG AGCATAAATT TATGTGTAGG 2757 .......... .......... .......... .......... .......... .......... 175 AATTCACTAA AATTGCAATA AATAGTAGAC ATGAATGATG TTGATGACGA CATGCTTGAG 2817 .......... .......... .......... .......... .......... .......... 175 ATGGTTGTAT TAATAGCTTG CATTAGTTTC GATCTTTTCT ATGGTATCAA TTCCCATAGT 2877 .......... .......... .......... .......... .......... .......... 175 TATACGTTGT TGTCGAAATG TTTATTTAGT TATTCTTTGA CATGAAATTT TTTTACTTTA 2937 .......... .......... .......... .......... .......... .......... 175 TGAGTAACTG ATAATATACT TGCAATTACA GGTGTGGACA CTGTAAGAGT CTTGCTCCTG 2997 ||||||||| |||||||||| |||||||||| .......... .......... .......... .GTGTGGACA CTGTAAGAGT CTTGCTCCTG 204 AGGTACACTT TCTTCTATAC AGTGCTTAAT GAAGGAAGGA ATATCATTTT TCTCTGTCAT 3057 || AG........ .......... .......... .......... .......... .......... 206 TATGTTTTTT CTTGGCATTT TCAATCTATG CAACTGATTT AATGTTAAAT TATGTTTCTT 3117 .......... .......... .......... .......... .......... .......... 206 TCCAGTATGA AAAAGCTGCC TCAGAGCTGA GTAGTCATGA CCCTCCAATT GTTCTAGCTA 3177 ||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .....TATGA AAAAGCTGCC TCAGAGCTGA GTAGTCATGA CCCTCCAATT GTTCTAGCTA 261 AGTATGATGC AAATGATGAA GCCAATAGAG AACTTTCAAA ACAGTACGAG ATCCAGGGTT 3237 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTATGATGC AAATGATGAA GCCAATAGAG AACTTTCAAA ACAGTACGAG ATCCAGGGTT 321 TCCCAACTAT TAAGATATTG AGAGATGGAG GAAAGAAAGT TCAAGACTAT AACGGTCCTC 3297 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCCCAACTAT TAAGATATTG AGAGATGGAG GAAAGAAAGT TCAAGACTAT AACGGTCCTC 381 GTGAAGCAGC TGGTATTGTA TCCTACTTGA AGAAACAAGT GGGTCCTGCA TCTGCTGAAA 3357 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGAAGCAGC TGGTATTGTA TCCTACTTGA AGAAACAAGT GGGTCCTGCA TCTGCTGAAA 441 TCAAGTCGAA GGAAGATGCC ACAAACCTTA TTGATGAGAA AAGTATCTTT GTTGTAAGTG 3417 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||| TCAAGTCGAA GGAAGATGCC ACAAACCTTA TTGATGAGAA AAGTATCTTT GTT....... 494 GTGATACTTT TGATGTTTTA CTTATCATTA CTGAAGTTTA TTTTCAGCAT GCCATAGCTT 3477 .......... .......... .......... .......... .......... .......... 494 CTTGCTGTCT AAAATCTTTC TGTTTCTTTA GGTTGGTATA TTTCCAGACC CCTCCGGAGA 3537 ||||||||| |||||||||| |||||||||| .......... .......... .......... .GTTGGTATA TTTCCAGACC CCTCCGGAGA 523 GAAATTCGAG AACTATTTAA CGCTAGCTGA AAAACTGCGA GGCGAGTTCG ATTTTGCTCA 3597 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAATTCGAG AACTATTTAA CGCTAGCTGA AAAACTGCGA GGCGAGTTCG ATTTTGCTCA 583 CACTGTTGAT GCTAAACACC TCCCTCGGGG TGGACCAGTC AACAAGCCCA CTCTTCGTCT 3657 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CACTGTTGAT GCTAAACACC TCCCTCGGGG TGGACCAGTC AACAAGCCCA CTCTTCGTCT 643 TCTAAAGCCA TTTGATGAAC TCTTTGTTGA TTTTGAGGTA TTACAGTTAT CTGTGTATAT 3717 ||| |||||| |||||||||| |||||||||| ||||||| TCT-AAGCCA TTTGATGAAC TCTTTGTTGA TTTTGAG... .......... .......... 679 TTTTATCTTT GATACTCATT GTATTATGGT TATGAGGCTC AACTCTGTCC TATGTTATCT 3777 .......... .......... .......... .......... .......... .......... 679 TTTAATTGGC CATTGATTGT ACATACTTGC AGGACTTTGA TGT 3820 |||||||| ||| .......... .......... .......... ..GACTTTGA TGT 690 hqPGS_C06HBa0054K13.1-11+_SGN-E328714+ (1618 1792,2969 2999,3123 3410,3509 3694,3810 3820) ******************************************************************************** EST sequence 111 +strand 675 n (File: SGN-E323117+) 1 TTCAGACAAA AATGGCAAAG AGTGGCATTT TGGTAATTGT TTCAGCTCTT GTTGTTCTTG 61 CAGTTTGTGG TGTTTTTGCT GAGGAGAACG AATATGTGTT GACTTTGGAC CATTCTAACC 121 TCACTGAGAC TGTTGCTAAG CACAACTTCA TTGTTGTTGA ATTCTATGCA CCTTGGTGTG 181 GACACTGTAA GAGTCTTGCT CCTGAGTATG AAAAAGCTGC CTCAGAGCTG AGTAGTCATG 241 ACCCTCCAAT TGTTCTAGCT AAGTATGATG CAAATGATGA AGCCAATAGA GAACTTTCAA 301 AACAGTACGA GATCCAGGGT TTCCCAACTA TTAAGATATT GAGAGATGGA GGAAAGAAAG 361 TTCAAGACTA TAACGGTCCT CGTGAAGCAG CTGGTATTGT ATCCTACTTG AAGAAACAAG 421 TGGGTCCTGC ATCTGCTGAA ATCAAGTCGA AGGAAGATGC CACAAACCTT ATTGATGAGA 481 AAAGTATCTT TGTTGTTGGT ATATTTCCAG ACCCCTCCGG AGAGNAATTC GAGAACTATT 541 TAACGCTAGC TGAAAAACTG CGAGGCGAGT TCGATTTTGC TCACACTGTT GATGCTAAAC 601 ACCTCCCTCG GGGTGGACCA GTCAACAAGC CCACTCTTCG TCTTCTAAGC CATTTGATGA 661 ACTCCTTGTT GATTT Predicted gene structure (within gDNA segment 1018 to 4399): Exon 1 1618 1792 ( 175 n); cDNA 1 175 ( 175 n); score: 1.000 Intron 1 1793 2968 (1176 n); Pd: 1.000 (s: 1.00), Pa: 0.997 (s: 0) Exon 2 2969 2999 ( 31 n); cDNA 176 206 ( 31 n); score: 1.000 Intron 2 3000 3122 ( 123 n); Pd: 0.917 (s: 0), Pa: 0.997 (s: 1.00) Exon 3 3123 3410 ( 288 n); cDNA 207 494 ( 288 n); score: 1.000 Intron 3 3411 3508 ( 98 n); Pd: 0.907 (s: 1.00), Pa: 0.997 (s: 0.98) Exon 4 3509 3690 ( 182 n); cDNA 495 675 ( 181 n); score: 0.984 MATCH C06HBa0054K13.1-11+ SGN-E323117+ 0.995 676 1.001 C PGS_C06HBa0054K13.1-11+_SGN-E323117+ (1618 1792,2969 2999,3123 3410,3509 3690) Alignment (genomic DNA sequence = upper lines): TTCAGACAAA AATGGCAAAG AGTGGCATTT TGGTAATTGT TTCAGCTCTT GTTGTTCTTG 1677 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCAGACAAA AATGGCAAAG AGTGGCATTT TGGTAATTGT TTCAGCTCTT GTTGTTCTTG 60 CAGTTTGTGG TGTTTTTGCT GAGGAGAACG AATATGTGTT GACTTTGGAC CATTCTAACC 1737 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAGTTTGTGG TGTTTTTGCT GAGGAGAACG AATATGTGTT GACTTTGGAC CATTCTAACC 120 TCACTGAGAC TGTTGCTAAG CACAACTTCA TTGTTGTTGA ATTCTATGCA CCTTGGTAAG 1797 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||| TCACTGAGAC TGTTGCTAAG CACAACTTCA TTGTTGTTGA ATTCTATGCA CCTTG..... 175 TCATCTGCTG TTTTTTTTTC TATTTATTTT CTTGAAAAAA GTTCATTTTT TTTGCTTGTT 1857 .......... .......... .......... .......... .......... .......... 175 GAATCTGTAT GTGCAGAATG TAATGAATGA TTGGATGTAA GGGGTTTTGT TTTTGATCTG 1917 .......... .......... .......... .......... .......... .......... 175 TTTTTTTTTT GTTATTTTAG TGAATTTTTG CTGTAATTTT TTTGTTTTCA TAAGCTGTGT 1977 .......... .......... .......... .......... .......... .......... 175 GAGGAATGCA TCAAGATCAG TTCTTTATGT TAATTTGTCT TAAAGGGTTC ATCAAGGACC 2037 .......... .......... .......... .......... .......... .......... 175 CCTTTGGCTC TACTTTGCTG TTCCTGTTTT TTTTTTTTTT TTGGAGTTTT ATCTTTTTGC 2097 .......... .......... .......... .......... .......... .......... 175 TGGTTTCTCT GGCTTTAGAA ACTGCATGTG CAGAAGATAA TCAATGACTG GTTCTTTTTC 2157 .......... .......... .......... .......... .......... .......... 175 TTTTGGGGAA TTTAAGGTTT TGTTATGTAA ATGGTTTTTT TTTCTGATTT TTCTGCTGTA 2217 .......... .......... .......... .......... .......... .......... 175 ATTTTTTATT TTACACATTG ACTTGAATTT GTCTGAAAGG GTTTTTCAAG GATCCTTTTG 2277 .......... .......... .......... .......... .......... .......... 175 TTGATGGATG TATTTTGATT TGTGGATTGA TTGAGGTTTT AAGGCTTTTT CTGTAAAAAG 2337 .......... .......... .......... .......... .......... .......... 175 CTTCTTCTTT TAATTCATGG TTGATGCTTC TAGAATCTGG ATTTGCTTGA TGAGTTCTAG 2397 .......... .......... .......... .......... .......... .......... 175 GTTATAAGGT TTCCTCTTTT TATTTAATTT GCTGCTTGTT TTTTGGTATT TAAAATCTCT 2457 .......... .......... .......... .......... .......... .......... 175 GTGTCCAGAA TTTTACAAAA ATATTAATAA ATCTGGATTT GTCTTTGTGT TCTGTGTTGC 2517 .......... .......... .......... .......... .......... .......... 175 TGCAAGTTAA TGGTTTTTCC ATTTCTGTGA CAGTCTAGTC AATTGGAATG TAAAATCTGT 2577 .......... .......... .......... .......... .......... .......... 175 TTTTCTATTT TTGTGTATGT ATTTGGATCT ATGTCAAGAG GTTCCAGTGA TCTGTGTTAA 2637 .......... .......... .......... .......... .......... .......... 175 TAGAAGTGAT TCTTTTAGCC AAATTGTCTT CTTGTTATGT GTAGTGGTGG ATCCAATGTA 2697 .......... .......... .......... .......... .......... .......... 175 ATGGTACCAG GTTCATCTGA ACCTAATAGT TTCGACTCGG AGCATAAATT TATGTGTAGG 2757 .......... .......... .......... .......... .......... .......... 175 AATTCACTAA AATTGCAATA AATAGTAGAC ATGAATGATG TTGATGACGA CATGCTTGAG 2817 .......... .......... .......... .......... .......... .......... 175 ATGGTTGTAT TAATAGCTTG CATTAGTTTC GATCTTTTCT ATGGTATCAA TTCCCATAGT 2877 .......... .......... .......... .......... .......... .......... 175 TATACGTTGT TGTCGAAATG TTTATTTAGT TATTCTTTGA CATGAAATTT TTTTACTTTA 2937 .......... .......... .......... .......... .......... .......... 175 TGAGTAACTG ATAATATACT TGCAATTACA GGTGTGGACA CTGTAAGAGT CTTGCTCCTG 2997 ||||||||| |||||||||| |||||||||| .......... .......... .......... .GTGTGGACA CTGTAAGAGT CTTGCTCCTG 204 AGGTACACTT TCTTCTATAC AGTGCTTAAT GAAGGAAGGA ATATCATTTT TCTCTGTCAT 3057 || AG........ .......... .......... .......... .......... .......... 206 TATGTTTTTT CTTGGCATTT TCAATCTATG CAACTGATTT AATGTTAAAT TATGTTTCTT 3117 .......... .......... .......... .......... .......... .......... 206 TCCAGTATGA AAAAGCTGCC TCAGAGCTGA GTAGTCATGA CCCTCCAATT GTTCTAGCTA 3177 ||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .....TATGA AAAAGCTGCC TCAGAGCTGA GTAGTCATGA CCCTCCAATT GTTCTAGCTA 261 AGTATGATGC AAATGATGAA GCCAATAGAG AACTTTCAAA ACAGTACGAG ATCCAGGGTT 3237 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTATGATGC AAATGATGAA GCCAATAGAG AACTTTCAAA ACAGTACGAG ATCCAGGGTT 321 TCCCAACTAT TAAGATATTG AGAGATGGAG GAAAGAAAGT TCAAGACTAT AACGGTCCTC 3297 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCCCAACTAT TAAGATATTG AGAGATGGAG GAAAGAAAGT TCAAGACTAT AACGGTCCTC 381 GTGAAGCAGC TGGTATTGTA TCCTACTTGA AGAAACAAGT GGGTCCTGCA TCTGCTGAAA 3357 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGAAGCAGC TGGTATTGTA TCCTACTTGA AGAAACAAGT GGGTCCTGCA TCTGCTGAAA 441 TCAAGTCGAA GGAAGATGCC ACAAACCTTA TTGATGAGAA AAGTATCTTT GTTGTAAGTG 3417 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||| TCAAGTCGAA GGAAGATGCC ACAAACCTTA TTGATGAGAA AAGTATCTTT GTT....... 494 GTGATACTTT TGATGTTTTA CTTATCATTA CTGAAGTTTA TTTTCAGCAT GCCATAGCTT 3477 .......... .......... .......... .......... .......... .......... 494 CTTGCTGTCT AAAATCTTTC TGTTTCTTTA GGTTGGTATA TTTCCAGACC CCTCCGGAGA 3537 ||||||||| |||||||||| |||||||||| .......... .......... .......... .GTTGGTATA TTTCCAGACC CCTCCGGAGA 523 GAAATTCGAG AACTATTTAA CGCTAGCTGA AAAACTGCGA GGCGAGTTCG ATTTTGCTCA 3597 | |||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GNAATTCGAG AACTATTTAA CGCTAGCTGA AAAACTGCGA GGCGAGTTCG ATTTTGCTCA 583 CACTGTTGAT GCTAAACACC TCCCTCGGGG TGGACCAGTC AACAAGCCCA CTCTTCGTCT 3657 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CACTGTTGAT GCTAAACACC TCCCTCGGGG TGGACCAGTC AACAAGCCCA CTCTTCGTCT 643 TCTAAAGCCA TTTGATGAAC TCTTTGTTGA TTT 3690 ||| |||||| |||||||||| || ||||||| ||| TCT-AAGCCA TTTGATGAAC TCCTTGTTGA TTT 675 hqPGS_C06HBa0054K13.1-11+_SGN-E323117+ (1618 1792,2969 2999,3123 3410,3509 3690) ******************************************************************************** EST sequence 26 +strand 666 n (File: SGN-E315175+) 1 TTCAGACAAA AATGGCAAAG AGTGGCATTT TGGTAATTGT TTCAGCTCTT GTTGTTCTTG 61 CAGTTTGTGG TGTTTTTGCT GAGGAGAACG AATATGTGTT GACTTTGGAC CATTCTAACC 121 TCACTGAGAC TGTTGCTAAG CACAACTTCA TTGTTGTTGA ATTCTATGCA CCTTGGTGTG 181 GACACTGTAA GAGTCTTGCT CCTGAGTATG AAAAAGCTGC CTCAGAGCTG AGTAGTCATG 241 ACCCTCCAAT TGTTCTAGCT AAGTATGATG CAAATGATGA AGCCAATAGA GAACTTTCAA 301 AACAGTACGA GATCCAGGGT TTCCCAACTA TTAAGATATT GAGAGATGGA GGAAAGAAAG 361 TTCAAGACTA TAACGGTCCT CGTGAAGCAG CTGGTATTGT ATCCTACTTG AAGAAACAAG 421 TGGGTCCTGC ATCTGCTGAA ATCAAGTCGA AGGAAGATGC CACAAACCTT ATTGATGAGA 481 AAAGTATCTT TGTTGTTGGT ATATTTCCAG ACCCCTCCGG AGAGAAATTC GAGAACTATT 541 TAACGCTAGC TGAAAAACTG CGAGGCGAGT TCGATTTTGC TCACACTGTT GATGCTAAAC 601 ACCTCCCTCG GGGTGGACCA GTCAACAAGC CCACTCTTCG TCTTCTAAAG CCATTTGATG 661 AACTCT Predicted gene structure (within gDNA segment 1018 to 4290): Exon 1 1618 1792 ( 175 n); cDNA 1 175 ( 175 n); score: 1.000 Intron 1 1793 2968 (1176 n); Pd: 1.000 (s: 1.00), Pa: 0.997 (s: 0) Exon 2 2969 2999 ( 31 n); cDNA 176 206 ( 31 n); score: 1.000 Intron 2 3000 3122 ( 123 n); Pd: 0.917 (s: 0), Pa: 0.997 (s: 1.00) Exon 3 3123 3410 ( 288 n); cDNA 207 494 ( 288 n); score: 1.000 Intron 3 3411 3508 ( 98 n); Pd: 0.907 (s: 1.00), Pa: 0.997 (s: 1.00) Exon 4 3509 3680 ( 172 n); cDNA 495 666 ( 172 n); score: 1.000 MATCH C06HBa0054K13.1-11+ SGN-E315175+ 1.000 666 1.000 C PGS_C06HBa0054K13.1-11+_SGN-E315175+ (1618 1792,2969 2999,3123 3410,3509 3680) Alignment (genomic DNA sequence = upper lines): TTCAGACAAA AATGGCAAAG AGTGGCATTT TGGTAATTGT TTCAGCTCTT GTTGTTCTTG 1677 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCAGACAAA AATGGCAAAG AGTGGCATTT TGGTAATTGT TTCAGCTCTT GTTGTTCTTG 60 CAGTTTGTGG TGTTTTTGCT GAGGAGAACG AATATGTGTT GACTTTGGAC CATTCTAACC 1737 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAGTTTGTGG TGTTTTTGCT GAGGAGAACG AATATGTGTT GACTTTGGAC CATTCTAACC 120 TCACTGAGAC TGTTGCTAAG CACAACTTCA TTGTTGTTGA ATTCTATGCA CCTTGGTAAG 1797 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||| TCACTGAGAC TGTTGCTAAG CACAACTTCA TTGTTGTTGA ATTCTATGCA CCTTG..... 175 TCATCTGCTG TTTTTTTTTC TATTTATTTT CTTGAAAAAA GTTCATTTTT TTTGCTTGTT 1857 .......... .......... .......... .......... .......... .......... 175 GAATCTGTAT GTGCAGAATG TAATGAATGA TTGGATGTAA GGGGTTTTGT TTTTGATCTG 1917 .......... .......... .......... .......... .......... .......... 175 TTTTTTTTTT GTTATTTTAG TGAATTTTTG CTGTAATTTT TTTGTTTTCA TAAGCTGTGT 1977 .......... .......... .......... .......... .......... .......... 175 GAGGAATGCA TCAAGATCAG TTCTTTATGT TAATTTGTCT TAAAGGGTTC ATCAAGGACC 2037 .......... .......... .......... .......... .......... .......... 175 CCTTTGGCTC TACTTTGCTG TTCCTGTTTT TTTTTTTTTT TTGGAGTTTT ATCTTTTTGC 2097 .......... .......... .......... .......... .......... .......... 175 TGGTTTCTCT GGCTTTAGAA ACTGCATGTG CAGAAGATAA TCAATGACTG GTTCTTTTTC 2157 .......... .......... .......... .......... .......... .......... 175 TTTTGGGGAA TTTAAGGTTT TGTTATGTAA ATGGTTTTTT TTTCTGATTT TTCTGCTGTA 2217 .......... .......... .......... .......... .......... .......... 175 ATTTTTTATT TTACACATTG ACTTGAATTT GTCTGAAAGG GTTTTTCAAG GATCCTTTTG 2277 .......... .......... .......... .......... .......... .......... 175 TTGATGGATG TATTTTGATT TGTGGATTGA TTGAGGTTTT AAGGCTTTTT CTGTAAAAAG 2337 .......... .......... .......... .......... .......... .......... 175 CTTCTTCTTT TAATTCATGG TTGATGCTTC TAGAATCTGG ATTTGCTTGA TGAGTTCTAG 2397 .......... .......... .......... .......... .......... .......... 175 GTTATAAGGT TTCCTCTTTT TATTTAATTT GCTGCTTGTT TTTTGGTATT TAAAATCTCT 2457 .......... .......... .......... .......... .......... .......... 175 GTGTCCAGAA TTTTACAAAA ATATTAATAA ATCTGGATTT GTCTTTGTGT TCTGTGTTGC 2517 .......... .......... .......... .......... .......... .......... 175 TGCAAGTTAA TGGTTTTTCC ATTTCTGTGA CAGTCTAGTC AATTGGAATG TAAAATCTGT 2577 .......... .......... .......... .......... .......... .......... 175 TTTTCTATTT TTGTGTATGT ATTTGGATCT ATGTCAAGAG GTTCCAGTGA TCTGTGTTAA 2637 .......... .......... .......... .......... .......... .......... 175 TAGAAGTGAT TCTTTTAGCC AAATTGTCTT CTTGTTATGT GTAGTGGTGG ATCCAATGTA 2697 .......... .......... .......... .......... .......... .......... 175 ATGGTACCAG GTTCATCTGA ACCTAATAGT TTCGACTCGG AGCATAAATT TATGTGTAGG 2757 .......... .......... .......... .......... .......... .......... 175 AATTCACTAA AATTGCAATA AATAGTAGAC ATGAATGATG TTGATGACGA CATGCTTGAG 2817 .......... .......... .......... .......... .......... .......... 175 ATGGTTGTAT TAATAGCTTG CATTAGTTTC GATCTTTTCT ATGGTATCAA TTCCCATAGT 2877 .......... .......... .......... .......... .......... .......... 175 TATACGTTGT TGTCGAAATG TTTATTTAGT TATTCTTTGA CATGAAATTT TTTTACTTTA 2937 .......... .......... .......... .......... .......... .......... 175 TGAGTAACTG ATAATATACT TGCAATTACA GGTGTGGACA CTGTAAGAGT CTTGCTCCTG 2997 ||||||||| |||||||||| |||||||||| .......... .......... .......... .GTGTGGACA CTGTAAGAGT CTTGCTCCTG 204 AGGTACACTT TCTTCTATAC AGTGCTTAAT GAAGGAAGGA ATATCATTTT TCTCTGTCAT 3057 || AG........ .......... .......... .......... .......... .......... 206 TATGTTTTTT CTTGGCATTT TCAATCTATG CAACTGATTT AATGTTAAAT TATGTTTCTT 3117 .......... .......... .......... .......... .......... .......... 206 TCCAGTATGA AAAAGCTGCC TCAGAGCTGA GTAGTCATGA CCCTCCAATT GTTCTAGCTA 3177 ||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .....TATGA AAAAGCTGCC TCAGAGCTGA GTAGTCATGA CCCTCCAATT GTTCTAGCTA 261 AGTATGATGC AAATGATGAA GCCAATAGAG AACTTTCAAA ACAGTACGAG ATCCAGGGTT 3237 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTATGATGC AAATGATGAA GCCAATAGAG AACTTTCAAA ACAGTACGAG ATCCAGGGTT 321 TCCCAACTAT TAAGATATTG AGAGATGGAG GAAAGAAAGT TCAAGACTAT AACGGTCCTC 3297 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCCCAACTAT TAAGATATTG AGAGATGGAG GAAAGAAAGT TCAAGACTAT AACGGTCCTC 381 GTGAAGCAGC TGGTATTGTA TCCTACTTGA AGAAACAAGT GGGTCCTGCA TCTGCTGAAA 3357 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGAAGCAGC TGGTATTGTA TCCTACTTGA AGAAACAAGT GGGTCCTGCA TCTGCTGAAA 441 TCAAGTCGAA GGAAGATGCC ACAAACCTTA TTGATGAGAA AAGTATCTTT GTTGTAAGTG 3417 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||| TCAAGTCGAA GGAAGATGCC ACAAACCTTA TTGATGAGAA AAGTATCTTT GTT....... 494 GTGATACTTT TGATGTTTTA CTTATCATTA CTGAAGTTTA TTTTCAGCAT GCCATAGCTT 3477 .......... .......... .......... .......... .......... .......... 494 CTTGCTGTCT AAAATCTTTC TGTTTCTTTA GGTTGGTATA TTTCCAGACC CCTCCGGAGA 3537 ||||||||| |||||||||| |||||||||| .......... .......... .......... .GTTGGTATA TTTCCAGACC CCTCCGGAGA 523 GAAATTCGAG AACTATTTAA CGCTAGCTGA AAAACTGCGA GGCGAGTTCG ATTTTGCTCA 3597 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAATTCGAG AACTATTTAA CGCTAGCTGA AAAACTGCGA GGCGAGTTCG ATTTTGCTCA 583 CACTGTTGAT GCTAAACACC TCCCTCGGGG TGGACCAGTC AACAAGCCCA CTCTTCGTCT 3657 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CACTGTTGAT GCTAAACACC TCCCTCGGGG TGGACCAGTC AACAAGCCCA CTCTTCGTCT 643 TCTAAAGCCA TTTGATGAAC TCT 3680 |||||||||| |||||||||| ||| TCTAAAGCCA TTTGATGAAC TCT 666 hqPGS_C06HBa0054K13.1-11+_SGN-E315175+ (1618 1792,2969 2999,3123 3410,3509 3680) ******************************************************************************** EST sequence 9 +strand 660 n (File: SGN-E314579+) 1 TTCAGACAAA AATGGCAAAG AGTGGCATTT TGGTAATTGT TTCAGCTCTT GTTGTTCTTG 61 CAGTTTGTGG TGTTTTTGCT GAGGAGAACG AATATGTGTT GACTTTGGAC CATTCTAACC 121 TCACTGAGAC TGTTGCTAAG CACAACTTCA TTGTTGTTGA ATTCTATGCA CCTTGGTGTG 181 GACACTGTAA GAGTCTTGCT CCTGAGTATG AAAAAGCTGC CTCAGAGCTG AGTAGTCATG 241 ACCCTCCAAT TGTTCTAGCT AAGTATGATG CAAATGATGA AGCCAATAGA GAACTTTCAA 301 AACAGTACGA GATCCAGGGT TTCCCAACTA TTAAGATATT GAGAGATGGA GGAAAGAAAG 361 TTCAAGACTA TAACGGTCCT CGTGAAGCAG CTGGTATTGT ATCCTACTTG AAGAAACAAG 421 TGGGTCCTGC ATCTGCTGAA ATCAAGTCGA AGGAAGATGC CACAAACCTT ATTGATGAGA 481 AAAGTATCTT TGTTGTTGGT ATATTTCCAG ACCCCTCCGG AGAGAAATTC GAGAACTATT 541 TAACGCTAGC TGAAAAACTG CGAGGCGAGT TCGATTTTGC TCACACTGTT GATGCTAAAC 601 ACCTCCCTCG GGGGTGACCA GTCAACAAGC CCACTCTTCG TCTTCTAAAG CCATTTGATG Predicted gene structure (within gDNA segment 1018 to 4284): Exon 1 1618 1792 ( 175 n); cDNA 1 175 ( 175 n); score: 1.000 Intron 1 1793 2968 (1176 n); Pd: 1.000 (s: 1.00), Pa: 0.997 (s: 0) Exon 2 2969 2999 ( 31 n); cDNA 176 206 ( 31 n); score: 1.000 Intron 2 3000 3122 ( 123 n); Pd: 0.917 (s: 0), Pa: 0.997 (s: 1.00) Exon 3 3123 3410 ( 288 n); cDNA 207 494 ( 288 n); score: 1.000 Intron 3 3411 3508 ( 98 n); Pd: 0.907 (s: 1.00), Pa: 0.997 (s: 1.00) Exon 4 3509 3674 ( 166 n); cDNA 495 660 ( 166 n); score: 0.988 MATCH C06HBa0054K13.1-11+ SGN-E314579+ 0.997 660 1.000 C PGS_C06HBa0054K13.1-11+_SGN-E314579+ (1618 1792,2969 2999,3123 3410,3509 3674) Alignment (genomic DNA sequence = upper lines): TTCAGACAAA AATGGCAAAG AGTGGCATTT TGGTAATTGT TTCAGCTCTT GTTGTTCTTG 1677 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCAGACAAA AATGGCAAAG AGTGGCATTT TGGTAATTGT TTCAGCTCTT GTTGTTCTTG 60 CAGTTTGTGG TGTTTTTGCT GAGGAGAACG AATATGTGTT GACTTTGGAC CATTCTAACC 1737 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAGTTTGTGG TGTTTTTGCT GAGGAGAACG AATATGTGTT GACTTTGGAC CATTCTAACC 120 TCACTGAGAC TGTTGCTAAG CACAACTTCA TTGTTGTTGA ATTCTATGCA CCTTGGTAAG 1797 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||| TCACTGAGAC TGTTGCTAAG CACAACTTCA TTGTTGTTGA ATTCTATGCA CCTTG..... 175 TCATCTGCTG TTTTTTTTTC TATTTATTTT CTTGAAAAAA GTTCATTTTT TTTGCTTGTT 1857 .......... .......... .......... .......... .......... .......... 175 GAATCTGTAT GTGCAGAATG TAATGAATGA TTGGATGTAA GGGGTTTTGT TTTTGATCTG 1917 .......... .......... .......... .......... .......... .......... 175 TTTTTTTTTT GTTATTTTAG TGAATTTTTG CTGTAATTTT TTTGTTTTCA TAAGCTGTGT 1977 .......... .......... .......... .......... .......... .......... 175 GAGGAATGCA TCAAGATCAG TTCTTTATGT TAATTTGTCT TAAAGGGTTC ATCAAGGACC 2037 .......... .......... .......... .......... .......... .......... 175 CCTTTGGCTC TACTTTGCTG TTCCTGTTTT TTTTTTTTTT TTGGAGTTTT ATCTTTTTGC 2097 .......... .......... .......... .......... .......... .......... 175 TGGTTTCTCT GGCTTTAGAA ACTGCATGTG CAGAAGATAA TCAATGACTG GTTCTTTTTC 2157 .......... .......... .......... .......... .......... .......... 175 TTTTGGGGAA TTTAAGGTTT TGTTATGTAA ATGGTTTTTT TTTCTGATTT TTCTGCTGTA 2217 .......... .......... .......... .......... .......... .......... 175 ATTTTTTATT TTACACATTG ACTTGAATTT GTCTGAAAGG GTTTTTCAAG GATCCTTTTG 2277 .......... .......... .......... .......... .......... .......... 175 TTGATGGATG TATTTTGATT TGTGGATTGA TTGAGGTTTT AAGGCTTTTT CTGTAAAAAG 2337 .......... .......... .......... .......... .......... .......... 175 CTTCTTCTTT TAATTCATGG TTGATGCTTC TAGAATCTGG ATTTGCTTGA TGAGTTCTAG 2397 .......... .......... .......... .......... .......... .......... 175 GTTATAAGGT TTCCTCTTTT TATTTAATTT GCTGCTTGTT TTTTGGTATT TAAAATCTCT 2457 .......... .......... .......... .......... .......... .......... 175 GTGTCCAGAA TTTTACAAAA ATATTAATAA ATCTGGATTT GTCTTTGTGT TCTGTGTTGC 2517 .......... .......... .......... .......... .......... .......... 175 TGCAAGTTAA TGGTTTTTCC ATTTCTGTGA CAGTCTAGTC AATTGGAATG TAAAATCTGT 2577 .......... .......... .......... .......... .......... .......... 175 TTTTCTATTT TTGTGTATGT ATTTGGATCT ATGTCAAGAG GTTCCAGTGA TCTGTGTTAA 2637 .......... .......... .......... .......... .......... .......... 175 TAGAAGTGAT TCTTTTAGCC AAATTGTCTT CTTGTTATGT GTAGTGGTGG ATCCAATGTA 2697 .......... .......... .......... .......... .......... .......... 175 ATGGTACCAG GTTCATCTGA ACCTAATAGT TTCGACTCGG AGCATAAATT TATGTGTAGG 2757 .......... .......... .......... .......... .......... .......... 175 AATTCACTAA AATTGCAATA AATAGTAGAC ATGAATGATG TTGATGACGA CATGCTTGAG 2817 .......... .......... .......... .......... .......... .......... 175 ATGGTTGTAT TAATAGCTTG CATTAGTTTC GATCTTTTCT ATGGTATCAA TTCCCATAGT 2877 .......... .......... .......... .......... .......... .......... 175 TATACGTTGT TGTCGAAATG TTTATTTAGT TATTCTTTGA CATGAAATTT TTTTACTTTA 2937 .......... .......... .......... .......... .......... .......... 175 TGAGTAACTG ATAATATACT TGCAATTACA GGTGTGGACA CTGTAAGAGT CTTGCTCCTG 2997 ||||||||| |||||||||| |||||||||| .......... .......... .......... .GTGTGGACA CTGTAAGAGT CTTGCTCCTG 204 AGGTACACTT TCTTCTATAC AGTGCTTAAT GAAGGAAGGA ATATCATTTT TCTCTGTCAT 3057 || AG........ .......... .......... .......... .......... .......... 206 TATGTTTTTT CTTGGCATTT TCAATCTATG CAACTGATTT AATGTTAAAT TATGTTTCTT 3117 .......... .......... .......... .......... .......... .......... 206 TCCAGTATGA AAAAGCTGCC TCAGAGCTGA GTAGTCATGA CCCTCCAATT GTTCTAGCTA 3177 ||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .....TATGA AAAAGCTGCC TCAGAGCTGA GTAGTCATGA CCCTCCAATT GTTCTAGCTA 261 AGTATGATGC AAATGATGAA GCCAATAGAG AACTTTCAAA ACAGTACGAG ATCCAGGGTT 3237 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTATGATGC AAATGATGAA GCCAATAGAG AACTTTCAAA ACAGTACGAG ATCCAGGGTT 321 TCCCAACTAT TAAGATATTG AGAGATGGAG GAAAGAAAGT TCAAGACTAT AACGGTCCTC 3297 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCCCAACTAT TAAGATATTG AGAGATGGAG GAAAGAAAGT TCAAGACTAT AACGGTCCTC 381 GTGAAGCAGC TGGTATTGTA TCCTACTTGA AGAAACAAGT GGGTCCTGCA TCTGCTGAAA 3357 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGAAGCAGC TGGTATTGTA TCCTACTTGA AGAAACAAGT GGGTCCTGCA TCTGCTGAAA 441 TCAAGTCGAA GGAAGATGCC ACAAACCTTA TTGATGAGAA AAGTATCTTT GTTGTAAGTG 3417 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||| TCAAGTCGAA GGAAGATGCC ACAAACCTTA TTGATGAGAA AAGTATCTTT GTT....... 494 GTGATACTTT TGATGTTTTA CTTATCATTA CTGAAGTTTA TTTTCAGCAT GCCATAGCTT 3477 .......... .......... .......... .......... .......... .......... 494 CTTGCTGTCT AAAATCTTTC TGTTTCTTTA GGTTGGTATA TTTCCAGACC CCTCCGGAGA 3537 ||||||||| |||||||||| |||||||||| .......... .......... .......... .GTTGGTATA TTTCCAGACC CCTCCGGAGA 523 GAAATTCGAG AACTATTTAA CGCTAGCTGA AAAACTGCGA GGCGAGTTCG ATTTTGCTCA 3597 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAATTCGAG AACTATTTAA CGCTAGCTGA AAAACTGCGA GGCGAGTTCG ATTTTGCTCA 583 CACTGTTGAT GCTAAACACC TCCCTCGGGG TGGACCAGTC AACAAGCCCA CTCTTCGTCT 3657 |||||||||| |||||||||| |||||||||| |||||||| |||||||||| |||||||||| CACTGTTGAT GCTAAACACC TCCCTCGGGG GTGACCAGTC AACAAGCCCA CTCTTCGTCT 643 TCTAAAGCCA TTTGATG 3674 |||||||||| ||||||| TCTAAAGCCA TTTGATG 660 hqPGS_C06HBa0054K13.1-11+_SGN-E314579+ (1618 1792,2969 2999,3123 3410,3509 3674) ******************************************************************************** EST sequence 36 +strand 361 n (File: SGN-E315809+) 1 TTCAGACAAA AATGGCAAAG AGTGGCATTT TGGTAATTGT TTCAGCTCTT GTTGTTCTTG 61 CAGTTTGTGG TGTTTTTGCT GAGGAGAACG AATATGTGTT GACTTTGGAC CATTCTAACC 121 TCACTGAGAC TGTTGCTAAG CACAACTTCA TTGTTGTTGA ATTCTATGCA CCTTGGTGTG 181 GACACTGTAA GAGTCTTGCT CCTGAGTATG AAAAAGCTGC CTCAGAGCTG AGTAGTCATG 241 ACCCTCCAAT TGTTCTAGCT AAGTATGATG CAAATGATGA AGCCAATAGA GAACTTTCAA 301 AACAGTACGA GATCCAGGGT TTCCCTACTA TTAAGATATT GAGAGATGGA GGAAAGAAAG 361 T Predicted gene structure (within gDNA segment 1018 to 3887): Exon 1 1618 1792 ( 175 n); cDNA 1 175 ( 175 n); score: 1.000 Intron 1 1793 2968 (1176 n); Pd: 1.000 (s: 1.00), Pa: 0.997 (s: 0) Exon 2 2969 2999 ( 31 n); cDNA 176 206 ( 31 n); score: 1.000 Intron 2 3000 3122 ( 123 n); Pd: 0.917 (s: 0), Pa: 0.997 (s: 1.00) Exon 3 3123 3277 ( 155 n); cDNA 207 361 ( 155 n); score: 0.994 MATCH C06HBa0054K13.1-11+ SGN-E315809+ 0.997 361 1.000 C PGS_C06HBa0054K13.1-11+_SGN-E315809+ (1618 1792,2969 2999,3123 3277) Alignment (genomic DNA sequence = upper lines): TTCAGACAAA AATGGCAAAG AGTGGCATTT TGGTAATTGT TTCAGCTCTT GTTGTTCTTG 1677 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCAGACAAA AATGGCAAAG AGTGGCATTT TGGTAATTGT TTCAGCTCTT GTTGTTCTTG 60 CAGTTTGTGG TGTTTTTGCT GAGGAGAACG AATATGTGTT GACTTTGGAC CATTCTAACC 1737 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAGTTTGTGG TGTTTTTGCT GAGGAGAACG AATATGTGTT GACTTTGGAC CATTCTAACC 120 TCACTGAGAC TGTTGCTAAG CACAACTTCA TTGTTGTTGA ATTCTATGCA CCTTGGTAAG 1797 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||| TCACTGAGAC TGTTGCTAAG CACAACTTCA TTGTTGTTGA ATTCTATGCA CCTTG..... 175 TCATCTGCTG TTTTTTTTTC TATTTATTTT CTTGAAAAAA GTTCATTTTT TTTGCTTGTT 1857 .......... .......... .......... .......... .......... .......... 175 GAATCTGTAT GTGCAGAATG TAATGAATGA TTGGATGTAA GGGGTTTTGT TTTTGATCTG 1917 .......... .......... .......... .......... .......... .......... 175 TTTTTTTTTT GTTATTTTAG TGAATTTTTG CTGTAATTTT TTTGTTTTCA TAAGCTGTGT 1977 .......... .......... .......... .......... .......... .......... 175 GAGGAATGCA TCAAGATCAG TTCTTTATGT TAATTTGTCT TAAAGGGTTC ATCAAGGACC 2037 .......... .......... .......... .......... .......... .......... 175 CCTTTGGCTC TACTTTGCTG TTCCTGTTTT TTTTTTTTTT TTGGAGTTTT ATCTTTTTGC 2097 .......... .......... .......... .......... .......... .......... 175 TGGTTTCTCT GGCTTTAGAA ACTGCATGTG CAGAAGATAA TCAATGACTG GTTCTTTTTC 2157 .......... .......... .......... .......... .......... .......... 175 TTTTGGGGAA TTTAAGGTTT TGTTATGTAA ATGGTTTTTT TTTCTGATTT TTCTGCTGTA 2217 .......... .......... .......... .......... .......... .......... 175 ATTTTTTATT TTACACATTG ACTTGAATTT GTCTGAAAGG GTTTTTCAAG GATCCTTTTG 2277 .......... .......... .......... .......... .......... .......... 175 TTGATGGATG TATTTTGATT TGTGGATTGA TTGAGGTTTT AAGGCTTTTT CTGTAAAAAG 2337 .......... .......... .......... .......... .......... .......... 175 CTTCTTCTTT TAATTCATGG TTGATGCTTC TAGAATCTGG ATTTGCTTGA TGAGTTCTAG 2397 .......... .......... .......... .......... .......... .......... 175 GTTATAAGGT TTCCTCTTTT TATTTAATTT GCTGCTTGTT TTTTGGTATT TAAAATCTCT 2457 .......... .......... .......... .......... .......... .......... 175 GTGTCCAGAA TTTTACAAAA ATATTAATAA ATCTGGATTT GTCTTTGTGT TCTGTGTTGC 2517 .......... .......... .......... .......... .......... .......... 175 TGCAAGTTAA TGGTTTTTCC ATTTCTGTGA CAGTCTAGTC AATTGGAATG TAAAATCTGT 2577 .......... .......... .......... .......... .......... .......... 175 TTTTCTATTT TTGTGTATGT ATTTGGATCT ATGTCAAGAG GTTCCAGTGA TCTGTGTTAA 2637 .......... .......... .......... .......... .......... .......... 175 TAGAAGTGAT TCTTTTAGCC AAATTGTCTT CTTGTTATGT GTAGTGGTGG ATCCAATGTA 2697 .......... .......... .......... .......... .......... .......... 175 ATGGTACCAG GTTCATCTGA ACCTAATAGT TTCGACTCGG AGCATAAATT TATGTGTAGG 2757 .......... .......... .......... .......... .......... .......... 175 AATTCACTAA AATTGCAATA AATAGTAGAC ATGAATGATG TTGATGACGA CATGCTTGAG 2817 .......... .......... .......... .......... .......... .......... 175 ATGGTTGTAT TAATAGCTTG CATTAGTTTC GATCTTTTCT ATGGTATCAA TTCCCATAGT 2877 .......... .......... .......... .......... .......... .......... 175 TATACGTTGT TGTCGAAATG TTTATTTAGT TATTCTTTGA CATGAAATTT TTTTACTTTA 2937 .......... .......... .......... .......... .......... .......... 175 TGAGTAACTG ATAATATACT TGCAATTACA GGTGTGGACA CTGTAAGAGT CTTGCTCCTG 2997 ||||||||| |||||||||| |||||||||| .......... .......... .......... .GTGTGGACA CTGTAAGAGT CTTGCTCCTG 204 AGGTACACTT TCTTCTATAC AGTGCTTAAT GAAGGAAGGA ATATCATTTT TCTCTGTCAT 3057 || AG........ .......... .......... .......... .......... .......... 206 TATGTTTTTT CTTGGCATTT TCAATCTATG CAACTGATTT AATGTTAAAT TATGTTTCTT 3117 .......... .......... .......... .......... .......... .......... 206 TCCAGTATGA AAAAGCTGCC TCAGAGCTGA GTAGTCATGA CCCTCCAATT GTTCTAGCTA 3177 ||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .....TATGA AAAAGCTGCC TCAGAGCTGA GTAGTCATGA CCCTCCAATT GTTCTAGCTA 261 AGTATGATGC AAATGATGAA GCCAATAGAG AACTTTCAAA ACAGTACGAG ATCCAGGGTT 3237 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTATGATGC AAATGATGAA GCCAATAGAG AACTTTCAAA ACAGTACGAG ATCCAGGGTT 321 TCCCAACTAT TAAGATATTG AGAGATGGAG GAAAGAAAGT 3277 |||| ||||| |||||||||| |||||||||| |||||||||| TCCCTACTAT TAAGATATTG AGAGATGGAG GAAAGAAAGT 361 hqPGS_C06HBa0054K13.1-11+_SGN-E315809+ (1618 1792,2969 2999,3123 3277) ******************************************************************************** EST sequence 39 +strand 667 n (File: SGN-E212612+) 1 TCAGACAAAA ATGGCAAAGA GTGGCATTTT GGTAATTGTT TCAGCTCTTG TTGTTCTTGC 61 AGTTTGTGGT GTTTTTGCTG AGGAGAACGA ATATGTGTTG ACTTTGGACC ATTCTAACCT 121 CACTGAGACT GTTGCTAAGC ACAACTTCAT TGTTGTTGAA TTCTATGCAC CTTGGTGTGG 181 ACACTGTAAG AGTCTTGCTC CTGAGTATGA AAAAGCTGCC TCAGAGCTGA GTAGTCATGA 241 CCCTCCAATT GTTCTAGCTA AGTATGATGC AAATGATGAA GCCAATAGAG AACTTTCAAA 301 ACAGTACGAG ATCCAGGGTT TCCCAACTAT TAAGATATTG AGAGATGGAG GAAAGAAAGT 361 TCAAGACTAT AACGGTCCTC GTGAAGCAGC TGGTATTGTA TCCTACTTGA AGAAACAAGT 421 GGGTCCTGCA TCTGCTGAAA TCAAGTCGAA GGAAGATGCC ACAAACCTTA TTGATGAGAA 481 AAGTATCTTT GTTGTTGGTA TATTTCCAGA CCCCTCCGGA GAGAAATTCG AGAACTATTT 541 AACGCTAGCT GAAAAACTGC GAGGCGAGTT CGATTTTGCT CACACTGTTG ATGCTAAACA 601 CCTCCCTCGG GGTGGACCAG TCAACAAGCC CACTCTTCGT CTTTCTAAGC CATTTGATGA 661 ACTCTTT Predicted gene structure (within gDNA segment 1019 to 4292): Exon 1 1619 1792 ( 174 n); cDNA 1 174 ( 174 n); score: 1.000 Intron 1 1793 2968 (1176 n); Pd: 1.000 (s: 1.00), Pa: 0.997 (s: 0) Exon 2 2969 2999 ( 31 n); cDNA 175 205 ( 31 n); score: 1.000 Intron 2 3000 3122 ( 123 n); Pd: 0.917 (s: 0), Pa: 0.997 (s: 1.00) Exon 3 3123 3410 ( 288 n); cDNA 206 493 ( 288 n); score: 1.000 Intron 3 3411 3508 ( 98 n); Pd: 0.907 (s: 1.00), Pa: 0.997 (s: 1.00) Exon 4 3509 3682 ( 174 n); cDNA 494 667 ( 174 n); score: 0.983 MATCH C06HBa0054K13.1-11+ SGN-E212612+ 0.995 667 1.000 C PGS_C06HBa0054K13.1-11+_SGN-E212612+ (1619 1792,2969 2999,3123 3410,3509 3682) Alignment (genomic DNA sequence = upper lines): TCAGACAAAA ATGGCAAAGA GTGGCATTTT GGTAATTGTT TCAGCTCTTG TTGTTCTTGC 1678 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCAGACAAAA ATGGCAAAGA GTGGCATTTT GGTAATTGTT TCAGCTCTTG TTGTTCTTGC 60 AGTTTGTGGT GTTTTTGCTG AGGAGAACGA ATATGTGTTG ACTTTGGACC ATTCTAACCT 1738 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTTTGTGGT GTTTTTGCTG AGGAGAACGA ATATGTGTTG ACTTTGGACC ATTCTAACCT 120 CACTGAGACT GTTGCTAAGC ACAACTTCAT TGTTGTTGAA TTCTATGCAC CTTGGTAAGT 1798 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||| CACTGAGACT GTTGCTAAGC ACAACTTCAT TGTTGTTGAA TTCTATGCAC CTTG...... 174 CATCTGCTGT TTTTTTTTCT ATTTATTTTC TTGAAAAAAG TTCATTTTTT TTGCTTGTTG 1858 .......... .......... .......... .......... .......... .......... 174 AATCTGTATG TGCAGAATGT AATGAATGAT TGGATGTAAG GGGTTTTGTT TTTGATCTGT 1918 .......... .......... .......... .......... .......... .......... 174 TTTTTTTTTG TTATTTTAGT GAATTTTTGC TGTAATTTTT TTGTTTTCAT AAGCTGTGTG 1978 .......... .......... .......... .......... .......... .......... 174 AGGAATGCAT CAAGATCAGT TCTTTATGTT AATTTGTCTT AAAGGGTTCA TCAAGGACCC 2038 .......... .......... .......... .......... .......... .......... 174 CTTTGGCTCT ACTTTGCTGT TCCTGTTTTT TTTTTTTTTT TGGAGTTTTA TCTTTTTGCT 2098 .......... .......... .......... .......... .......... .......... 174 GGTTTCTCTG GCTTTAGAAA CTGCATGTGC AGAAGATAAT CAATGACTGG TTCTTTTTCT 2158 .......... .......... .......... .......... .......... .......... 174 TTTGGGGAAT TTAAGGTTTT GTTATGTAAA TGGTTTTTTT TTCTGATTTT TCTGCTGTAA 2218 .......... .......... .......... .......... .......... .......... 174 TTTTTTATTT TACACATTGA CTTGAATTTG TCTGAAAGGG TTTTTCAAGG ATCCTTTTGT 2278 .......... .......... .......... .......... .......... .......... 174 TGATGGATGT ATTTTGATTT GTGGATTGAT TGAGGTTTTA AGGCTTTTTC TGTAAAAAGC 2338 .......... .......... .......... .......... .......... .......... 174 TTCTTCTTTT AATTCATGGT TGATGCTTCT AGAATCTGGA TTTGCTTGAT GAGTTCTAGG 2398 .......... .......... .......... .......... .......... .......... 174 TTATAAGGTT TCCTCTTTTT ATTTAATTTG CTGCTTGTTT TTTGGTATTT AAAATCTCTG 2458 .......... .......... .......... .......... .......... .......... 174 TGTCCAGAAT TTTACAAAAA TATTAATAAA TCTGGATTTG TCTTTGTGTT CTGTGTTGCT 2518 .......... .......... .......... .......... .......... .......... 174 GCAAGTTAAT GGTTTTTCCA TTTCTGTGAC AGTCTAGTCA ATTGGAATGT AAAATCTGTT 2578 .......... .......... .......... .......... .......... .......... 174 TTTCTATTTT TGTGTATGTA TTTGGATCTA TGTCAAGAGG TTCCAGTGAT CTGTGTTAAT 2638 .......... .......... .......... .......... .......... .......... 174 AGAAGTGATT CTTTTAGCCA AATTGTCTTC TTGTTATGTG TAGTGGTGGA TCCAATGTAA 2698 .......... .......... .......... .......... .......... .......... 174 TGGTACCAGG TTCATCTGAA CCTAATAGTT TCGACTCGGA GCATAAATTT ATGTGTAGGA 2758 .......... .......... .......... .......... .......... .......... 174 ATTCACTAAA ATTGCAATAA ATAGTAGACA TGAATGATGT TGATGACGAC ATGCTTGAGA 2818 .......... .......... .......... .......... .......... .......... 174 TGGTTGTATT AATAGCTTGC ATTAGTTTCG ATCTTTTCTA TGGTATCAAT TCCCATAGTT 2878 .......... .......... .......... .......... .......... .......... 174 ATACGTTGTT GTCGAAATGT TTATTTAGTT ATTCTTTGAC ATGAAATTTT TTTACTTTAT 2938 .......... .......... .......... .......... .......... .......... 174 GAGTAACTGA TAATATACTT GCAATTACAG GTGTGGACAC TGTAAGAGTC TTGCTCCTGA 2998 |||||||||| |||||||||| |||||||||| .......... .......... .......... GTGTGGACAC TGTAAGAGTC TTGCTCCTGA 204 GGTACACTTT CTTCTATACA GTGCTTAATG AAGGAAGGAA TATCATTTTT CTCTGTCATT 3058 | G......... .......... .......... .......... .......... .......... 205 ATGTTTTTTC TTGGCATTTT CAATCTATGC AACTGATTTA ATGTTAAATT ATGTTTCTTT 3118 .......... .......... .......... .......... .......... .......... 205 CCAGTATGAA AAAGCTGCCT CAGAGCTGAG TAGTCATGAC CCTCCAATTG TTCTAGCTAA 3178 |||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ....TATGAA AAAGCTGCCT CAGAGCTGAG TAGTCATGAC CCTCCAATTG TTCTAGCTAA 261 GTATGATGCA AATGATGAAG CCAATAGAGA ACTTTCAAAA CAGTACGAGA TCCAGGGTTT 3238 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTATGATGCA AATGATGAAG CCAATAGAGA ACTTTCAAAA CAGTACGAGA TCCAGGGTTT 321 CCCAACTATT AAGATATTGA GAGATGGAGG AAAGAAAGTT CAAGACTATA ACGGTCCTCG 3298 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCCAACTATT AAGATATTGA GAGATGGAGG AAAGAAAGTT CAAGACTATA ACGGTCCTCG 381 TGAAGCAGCT GGTATTGTAT CCTACTTGAA GAAACAAGTG GGTCCTGCAT CTGCTGAAAT 3358 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAAGCAGCT GGTATTGTAT CCTACTTGAA GAAACAAGTG GGTCCTGCAT CTGCTGAAAT 441 CAAGTCGAAG GAAGATGCCA CAAACCTTAT TGATGAGAAA AGTATCTTTG TTGTAAGTGG 3418 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| || CAAGTCGAAG GAAGATGCCA CAAACCTTAT TGATGAGAAA AGTATCTTTG TT........ 493 TGATACTTTT GATGTTTTAC TTATCATTAC TGAAGTTTAT TTTCAGCATG CCATAGCTTC 3478 .......... .......... .......... .......... .......... .......... 493 TTGCTGTCTA AAATCTTTCT GTTTCTTTAG GTTGGTATAT TTCCAGACCC CTCCGGAGAG 3538 |||||||||| |||||||||| |||||||||| .......... .......... .......... GTTGGTATAT TTCCAGACCC CTCCGGAGAG 523 AAATTCGAGA ACTATTTAAC GCTAGCTGAA AAACTGCGAG GCGAGTTCGA TTTTGCTCAC 3598 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAATTCGAGA ACTATTTAAC GCTAGCTGAA AAACTGCGAG GCGAGTTCGA TTTTGCTCAC 583 ACTGTTGATG CTAAACACCT CCCTCGGGGT GGACCAGTCA ACAAGCCCAC TCTTCGTCTT 3658 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACTGTTGATG CTAAACACCT CCCTCGGGGT GGACCAGTCA ACAAGCCCAC TCTTCGTCTT 643 CTAAAGCCAT TTGATGAACT CTTT 3682 ||||||| |||||||||| |||| TCTAAGCCAT TTGATGAACT CTTT 667 hqPGS_C06HBa0054K13.1-11+_SGN-E212612+ (1619 1792,2969 2999,3123 3410,3509 3682) ******************************************************************************** EST sequence 115 +strand 607 n (File: SGN-E322978+) 1 TCAGACAAAA ATGGCAAAGA GTGGCATTTT GGTAATTGTT TCAGCTCTTG TTGTTCTTGC 61 AGTTTGTGGT GTTTTTGCTG AGGAGAACGA ATATGTGTTG ACTTTGGACC ATTCTAACCT 121 CACTGAGACT GTTGCTAAGC ACAACTTCAT TGTTGTTGAA TTCTATGCAC CTTGGTGTGG 181 ACACTGTAAG AGTCTTGCTC CTGAGTATGA AAAAGCTGCC TCAGAGCTGA GTAGTCATGA 241 CCCTCCAATT GTTCTAGCTA AGTATGATGC AAATGATGAA GCCAATAGAG AACTTTCAAA 301 ACAGTACGAG ATCCAGGGTT TCCCAACTAT TAAGATATTG AGAGATGGAG GAAAGAAAGT 361 TCAAGACTAT AACGGTCCTC GTGAAGCAGC TGGTATTGTA TCCTACTTGA AGAAACAAGT 421 GGGTCCTGCA TCTGCTGAAA TCAAGTCGAA GGAAGATGCC ACAAACCTTA TTGATGAGAA 481 AAGTATCTTT GCTGTTGGTA TATTTCCAGA CCCCTCCGGA GAGAAATTCG AGAACTATTT 541 AACGCTAGCT GAANAACTGC GAGGCGANGT CGATTTTGCT CACACTGTTG ATGCTAAACA 601 CCTCCCT Predicted gene structure (within gDNA segment 1019 to 4232): Exon 1 1619 1792 ( 174 n); cDNA 1 174 ( 174 n); score: 1.000 Intron 1 1793 2968 (1176 n); Pd: 1.000 (s: 1.00), Pa: 0.997 (s: 0) Exon 2 2969 2999 ( 31 n); cDNA 175 205 ( 31 n); score: 1.000 Intron 2 3000 3122 ( 123 n); Pd: 0.917 (s: 0), Pa: 0.997 (s: 1.00) Exon 3 3123 3410 ( 288 n); cDNA 206 493 ( 288 n); score: 0.997 Intron 3 3411 3508 ( 98 n); Pd: 0.907 (s: 0.98), Pa: 0.997 (s: 1.00) Exon 4 3509 3622 ( 114 n); cDNA 494 607 ( 114 n); score: 0.974 MATCH C06HBa0054K13.1-11+ SGN-E322978+ 0.993 607 1.000 C PGS_C06HBa0054K13.1-11+_SGN-E322978+ (1619 1792,2969 2999,3123 3410,3509 3622) Alignment (genomic DNA sequence = upper lines): TCAGACAAAA ATGGCAAAGA GTGGCATTTT GGTAATTGTT TCAGCTCTTG TTGTTCTTGC 1678 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCAGACAAAA ATGGCAAAGA GTGGCATTTT GGTAATTGTT TCAGCTCTTG TTGTTCTTGC 60 AGTTTGTGGT GTTTTTGCTG AGGAGAACGA ATATGTGTTG ACTTTGGACC ATTCTAACCT 1738 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTTTGTGGT GTTTTTGCTG AGGAGAACGA ATATGTGTTG ACTTTGGACC ATTCTAACCT 120 CACTGAGACT GTTGCTAAGC ACAACTTCAT TGTTGTTGAA TTCTATGCAC CTTGGTAAGT 1798 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||| CACTGAGACT GTTGCTAAGC ACAACTTCAT TGTTGTTGAA TTCTATGCAC CTTG...... 174 CATCTGCTGT TTTTTTTTCT ATTTATTTTC TTGAAAAAAG TTCATTTTTT TTGCTTGTTG 1858 .......... .......... .......... .......... .......... .......... 174 AATCTGTATG TGCAGAATGT AATGAATGAT TGGATGTAAG GGGTTTTGTT TTTGATCTGT 1918 .......... .......... .......... .......... .......... .......... 174 TTTTTTTTTG TTATTTTAGT GAATTTTTGC TGTAATTTTT TTGTTTTCAT AAGCTGTGTG 1978 .......... .......... .......... .......... .......... .......... 174 AGGAATGCAT CAAGATCAGT TCTTTATGTT AATTTGTCTT AAAGGGTTCA TCAAGGACCC 2038 .......... .......... .......... .......... .......... .......... 174 CTTTGGCTCT ACTTTGCTGT TCCTGTTTTT TTTTTTTTTT TGGAGTTTTA TCTTTTTGCT 2098 .......... .......... .......... .......... .......... .......... 174 GGTTTCTCTG GCTTTAGAAA CTGCATGTGC AGAAGATAAT CAATGACTGG TTCTTTTTCT 2158 .......... .......... .......... .......... .......... .......... 174 TTTGGGGAAT TTAAGGTTTT GTTATGTAAA TGGTTTTTTT TTCTGATTTT TCTGCTGTAA 2218 .......... .......... .......... .......... .......... .......... 174 TTTTTTATTT TACACATTGA CTTGAATTTG TCTGAAAGGG TTTTTCAAGG ATCCTTTTGT 2278 .......... .......... .......... .......... .......... .......... 174 TGATGGATGT ATTTTGATTT GTGGATTGAT TGAGGTTTTA AGGCTTTTTC TGTAAAAAGC 2338 .......... .......... .......... .......... .......... .......... 174 TTCTTCTTTT AATTCATGGT TGATGCTTCT AGAATCTGGA TTTGCTTGAT GAGTTCTAGG 2398 .......... .......... .......... .......... .......... .......... 174 TTATAAGGTT TCCTCTTTTT ATTTAATTTG CTGCTTGTTT TTTGGTATTT AAAATCTCTG 2458 .......... .......... .......... .......... .......... .......... 174 TGTCCAGAAT TTTACAAAAA TATTAATAAA TCTGGATTTG TCTTTGTGTT CTGTGTTGCT 2518 .......... .......... .......... .......... .......... .......... 174 GCAAGTTAAT GGTTTTTCCA TTTCTGTGAC AGTCTAGTCA ATTGGAATGT AAAATCTGTT 2578 .......... .......... .......... .......... .......... .......... 174 TTTCTATTTT TGTGTATGTA TTTGGATCTA TGTCAAGAGG TTCCAGTGAT CTGTGTTAAT 2638 .......... .......... .......... .......... .......... .......... 174 AGAAGTGATT CTTTTAGCCA AATTGTCTTC TTGTTATGTG TAGTGGTGGA TCCAATGTAA 2698 .......... .......... .......... .......... .......... .......... 174 TGGTACCAGG TTCATCTGAA CCTAATAGTT TCGACTCGGA GCATAAATTT ATGTGTAGGA 2758 .......... .......... .......... .......... .......... .......... 174 ATTCACTAAA ATTGCAATAA ATAGTAGACA TGAATGATGT TGATGACGAC ATGCTTGAGA 2818 .......... .......... .......... .......... .......... .......... 174 TGGTTGTATT AATAGCTTGC ATTAGTTTCG ATCTTTTCTA TGGTATCAAT TCCCATAGTT 2878 .......... .......... .......... .......... .......... .......... 174 ATACGTTGTT GTCGAAATGT TTATTTAGTT ATTCTTTGAC ATGAAATTTT TTTACTTTAT 2938 .......... .......... .......... .......... .......... .......... 174 GAGTAACTGA TAATATACTT GCAATTACAG GTGTGGACAC TGTAAGAGTC TTGCTCCTGA 2998 |||||||||| |||||||||| |||||||||| .......... .......... .......... GTGTGGACAC TGTAAGAGTC TTGCTCCTGA 204 GGTACACTTT CTTCTATACA GTGCTTAATG AAGGAAGGAA TATCATTTTT CTCTGTCATT 3058 | G......... .......... .......... .......... .......... .......... 205 ATGTTTTTTC TTGGCATTTT CAATCTATGC AACTGATTTA ATGTTAAATT ATGTTTCTTT 3118 .......... .......... .......... .......... .......... .......... 205 CCAGTATGAA AAAGCTGCCT CAGAGCTGAG TAGTCATGAC CCTCCAATTG TTCTAGCTAA 3178 |||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ....TATGAA AAAGCTGCCT CAGAGCTGAG TAGTCATGAC CCTCCAATTG TTCTAGCTAA 261 GTATGATGCA AATGATGAAG CCAATAGAGA ACTTTCAAAA CAGTACGAGA TCCAGGGTTT 3238 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTATGATGCA AATGATGAAG CCAATAGAGA ACTTTCAAAA CAGTACGAGA TCCAGGGTTT 321 CCCAACTATT AAGATATTGA GAGATGGAGG AAAGAAAGTT CAAGACTATA ACGGTCCTCG 3298 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCCAACTATT AAGATATTGA GAGATGGAGG AAAGAAAGTT CAAGACTATA ACGGTCCTCG 381 TGAAGCAGCT GGTATTGTAT CCTACTTGAA GAAACAAGTG GGTCCTGCAT CTGCTGAAAT 3358 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAAGCAGCT GGTATTGTAT CCTACTTGAA GAAACAAGTG GGTCCTGCAT CTGCTGAAAT 441 CAAGTCGAAG GAAGATGCCA CAAACCTTAT TGATGAGAAA AGTATCTTTG TTGTAAGTGG 3418 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| | CAAGTCGAAG GAAGATGCCA CAAACCTTAT TGATGAGAAA AGTATCTTTG CT........ 493 TGATACTTTT GATGTTTTAC TTATCATTAC TGAAGTTTAT TTTCAGCATG CCATAGCTTC 3478 .......... .......... .......... .......... .......... .......... 493 TTGCTGTCTA AAATCTTTCT GTTTCTTTAG GTTGGTATAT TTCCAGACCC CTCCGGAGAG 3538 |||||||||| |||||||||| |||||||||| .......... .......... .......... GTTGGTATAT TTCCAGACCC CTCCGGAGAG 523 AAATTCGAGA ACTATTTAAC GCTAGCTGAA AAACTGCGAG GCGAGTTCGA TTTTGCTCAC 3598 |||||||||| |||||||||| |||||||||| ||||||||| |||| |||| |||||||||| AAATTCGAGA ACTATTTAAC GCTAGCTGAA NAACTGCGAG GCGANGTCGA TTTTGCTCAC 583 ACTGTTGATG CTAAACACCT CCCT 3622 |||||||||| |||||||||| |||| ACTGTTGATG CTAAACACCT CCCT 607 hqPGS_C06HBa0054K13.1-11+_SGN-E322978+ (1619 1792,2969 2999,3123 3410,3509 3622) ******************************************************************************** EST sequence 87 +strand 558 n (File: SGN-E247020+) 1 TCAGACAAAA ATGGCAAAGA GTGGCATTTT GGTAATTGTT TCAGCTCTTG TTGTTCTTGC 61 AGTTTGTGGT GTTTTTGCTG AGGAGAACGA ATATGTGTTG ACTTTGGACC ATTCTAACCT 121 CACTGAGACT GTTGCTAAGC ACAACTTCAT TGTTGTTGAA TTCTATGCAC CTTGGTGTGG 181 ACACTGTAAG AGTCTTGCTC CTGAGTATGA AAAAGCTGCC TCAGAGCTGA GTAGTCATGA 241 CCCTCCAATT GTTCTAGCTA AGTATGATGC AAATGATGAA GCCAATAGAG AACTTTCAAA 301 ACAGTACGAG ATCCAGGGTT TCCCAACTAT TAAGATATTG AGAGATGGAG GAAAGAAAGT 361 TCAAGACTAT AACGGTCCTC GTGAAGCAGC TGGTATTGTA TCCTACTTGA AGAAACAAGT 421 GGGTCCTGCA TCTGCTGAAA TCAAGTCGAA GGAAGATGCC ACANACCTTA TTGATGAGAA 481 AAGTATCTTT GTTGTTGGTA TATTTCCAGA CCCCTCCGGA GAGAAATTCG AGAACTATTT 541 AACGCTAGCT GAAAAACT Predicted gene structure (within gDNA segment 1019 to 4183): Exon 1 1619 1792 ( 174 n); cDNA 1 174 ( 174 n); score: 1.000 Intron 1 1793 2968 (1176 n); Pd: 1.000 (s: 1.00), Pa: 0.997 (s: 0) Exon 2 2969 2999 ( 31 n); cDNA 175 205 ( 31 n); score: 1.000 Intron 2 3000 3122 ( 123 n); Pd: 0.917 (s: 0), Pa: 0.997 (s: 1.00) Exon 3 3123 3410 ( 288 n); cDNA 206 493 ( 288 n); score: 0.997 Intron 3 3411 3508 ( 98 n); Pd: 0.907 (s: 0.98), Pa: 0.997 (s: 1.00) Exon 4 3509 3573 ( 65 n); cDNA 494 558 ( 65 n); score: 1.000 MATCH C06HBa0054K13.1-11+ SGN-E247020+ 0.998 558 1.000 C PGS_C06HBa0054K13.1-11+_SGN-E247020+ (1619 1792,2969 2999,3123 3410,3509 3573) Alignment (genomic DNA sequence = upper lines): TCAGACAAAA ATGGCAAAGA GTGGCATTTT GGTAATTGTT TCAGCTCTTG TTGTTCTTGC 1678 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCAGACAAAA ATGGCAAAGA GTGGCATTTT GGTAATTGTT TCAGCTCTTG TTGTTCTTGC 60 AGTTTGTGGT GTTTTTGCTG AGGAGAACGA ATATGTGTTG ACTTTGGACC ATTCTAACCT 1738 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTTTGTGGT GTTTTTGCTG AGGAGAACGA ATATGTGTTG ACTTTGGACC ATTCTAACCT 120 CACTGAGACT GTTGCTAAGC ACAACTTCAT TGTTGTTGAA TTCTATGCAC CTTGGTAAGT 1798 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||| CACTGAGACT GTTGCTAAGC ACAACTTCAT TGTTGTTGAA TTCTATGCAC CTTG...... 174 CATCTGCTGT TTTTTTTTCT ATTTATTTTC TTGAAAAAAG TTCATTTTTT TTGCTTGTTG 1858 .......... .......... .......... .......... .......... .......... 174 AATCTGTATG TGCAGAATGT AATGAATGAT TGGATGTAAG GGGTTTTGTT TTTGATCTGT 1918 .......... .......... .......... .......... .......... .......... 174 TTTTTTTTTG TTATTTTAGT GAATTTTTGC TGTAATTTTT TTGTTTTCAT AAGCTGTGTG 1978 .......... .......... .......... .......... .......... .......... 174 AGGAATGCAT CAAGATCAGT TCTTTATGTT AATTTGTCTT AAAGGGTTCA TCAAGGACCC 2038 .......... .......... .......... .......... .......... .......... 174 CTTTGGCTCT ACTTTGCTGT TCCTGTTTTT TTTTTTTTTT TGGAGTTTTA TCTTTTTGCT 2098 .......... .......... .......... .......... .......... .......... 174 GGTTTCTCTG GCTTTAGAAA CTGCATGTGC AGAAGATAAT CAATGACTGG TTCTTTTTCT 2158 .......... .......... .......... .......... .......... .......... 174 TTTGGGGAAT TTAAGGTTTT GTTATGTAAA TGGTTTTTTT TTCTGATTTT TCTGCTGTAA 2218 .......... .......... .......... .......... .......... .......... 174 TTTTTTATTT TACACATTGA CTTGAATTTG TCTGAAAGGG TTTTTCAAGG ATCCTTTTGT 2278 .......... .......... .......... .......... .......... .......... 174 TGATGGATGT ATTTTGATTT GTGGATTGAT TGAGGTTTTA AGGCTTTTTC TGTAAAAAGC 2338 .......... .......... .......... .......... .......... .......... 174 TTCTTCTTTT AATTCATGGT TGATGCTTCT AGAATCTGGA TTTGCTTGAT GAGTTCTAGG 2398 .......... .......... .......... .......... .......... .......... 174 TTATAAGGTT TCCTCTTTTT ATTTAATTTG CTGCTTGTTT TTTGGTATTT AAAATCTCTG 2458 .......... .......... .......... .......... .......... .......... 174 TGTCCAGAAT TTTACAAAAA TATTAATAAA TCTGGATTTG TCTTTGTGTT CTGTGTTGCT 2518 .......... .......... .......... .......... .......... .......... 174 GCAAGTTAAT GGTTTTTCCA TTTCTGTGAC AGTCTAGTCA ATTGGAATGT AAAATCTGTT 2578 .......... .......... .......... .......... .......... .......... 174 TTTCTATTTT TGTGTATGTA TTTGGATCTA TGTCAAGAGG TTCCAGTGAT CTGTGTTAAT 2638 .......... .......... .......... .......... .......... .......... 174 AGAAGTGATT CTTTTAGCCA AATTGTCTTC TTGTTATGTG TAGTGGTGGA TCCAATGTAA 2698 .......... .......... .......... .......... .......... .......... 174 TGGTACCAGG TTCATCTGAA CCTAATAGTT TCGACTCGGA GCATAAATTT ATGTGTAGGA 2758 .......... .......... .......... .......... .......... .......... 174 ATTCACTAAA ATTGCAATAA ATAGTAGACA TGAATGATGT TGATGACGAC ATGCTTGAGA 2818 .......... .......... .......... .......... .......... .......... 174 TGGTTGTATT AATAGCTTGC ATTAGTTTCG ATCTTTTCTA TGGTATCAAT TCCCATAGTT 2878 .......... .......... .......... .......... .......... .......... 174 ATACGTTGTT GTCGAAATGT TTATTTAGTT ATTCTTTGAC ATGAAATTTT TTTACTTTAT 2938 .......... .......... .......... .......... .......... .......... 174 GAGTAACTGA TAATATACTT GCAATTACAG GTGTGGACAC TGTAAGAGTC TTGCTCCTGA 2998 |||||||||| |||||||||| |||||||||| .......... .......... .......... GTGTGGACAC TGTAAGAGTC TTGCTCCTGA 204 GGTACACTTT CTTCTATACA GTGCTTAATG AAGGAAGGAA TATCATTTTT CTCTGTCATT 3058 | G......... .......... .......... .......... .......... .......... 205 ATGTTTTTTC TTGGCATTTT CAATCTATGC AACTGATTTA ATGTTAAATT ATGTTTCTTT 3118 .......... .......... .......... .......... .......... .......... 205 CCAGTATGAA AAAGCTGCCT CAGAGCTGAG TAGTCATGAC CCTCCAATTG TTCTAGCTAA 3178 |||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ....TATGAA AAAGCTGCCT CAGAGCTGAG TAGTCATGAC CCTCCAATTG TTCTAGCTAA 261 GTATGATGCA AATGATGAAG CCAATAGAGA ACTTTCAAAA CAGTACGAGA TCCAGGGTTT 3238 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTATGATGCA AATGATGAAG CCAATAGAGA ACTTTCAAAA CAGTACGAGA TCCAGGGTTT 321 CCCAACTATT AAGATATTGA GAGATGGAGG AAAGAAAGTT CAAGACTATA ACGGTCCTCG 3298 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCCAACTATT AAGATATTGA GAGATGGAGG AAAGAAAGTT CAAGACTATA ACGGTCCTCG 381 TGAAGCAGCT GGTATTGTAT CCTACTTGAA GAAACAAGTG GGTCCTGCAT CTGCTGAAAT 3358 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAAGCAGCT GGTATTGTAT CCTACTTGAA GAAACAAGTG GGTCCTGCAT CTGCTGAAAT 441 CAAGTCGAAG GAAGATGCCA CAAACCTTAT TGATGAGAAA AGTATCTTTG TTGTAAGTGG 3418 |||||||||| |||||||||| || ||||||| |||||||||| |||||||||| || CAAGTCGAAG GAAGATGCCA CANACCTTAT TGATGAGAAA AGTATCTTTG TT........ 493 TGATACTTTT GATGTTTTAC TTATCATTAC TGAAGTTTAT TTTCAGCATG CCATAGCTTC 3478 .......... .......... .......... .......... .......... .......... 493 TTGCTGTCTA AAATCTTTCT GTTTCTTTAG GTTGGTATAT TTCCAGACCC CTCCGGAGAG 3538 |||||||||| |||||||||| |||||||||| .......... .......... .......... GTTGGTATAT TTCCAGACCC CTCCGGAGAG 523 AAATTCGAGA ACTATTTAAC GCTAGCTGAA AAACT 3573 |||||||||| |||||||||| |||||||||| ||||| AAATTCGAGA ACTATTTAAC GCTAGCTGAA AAACT 558 hqPGS_C06HBa0054K13.1-11+_SGN-E247020+ (1619 1792,2969 2999,3123 3410,3509 3573) ******************************************************************************** EST sequence 114 +strand 308 n (File: SGN-E322777+) 1 TCAGACAAAA ATGGCAAAGA GTGGCATTTT GGTAATTGTT TCAGCTCTTG TTGTTCTTGC 61 AGTTTGTGGT GTTTTTGCTG AGGAGAACGA ATATGTGTTG ACTTTGGACC ATTCTAACCT 121 CACTGAGACT GTTGCTAAGC ACAACTTCAT TGTTGTTGAA TTCTATGCAC CTTGGTGTGG 181 ACACTGTAAG AGTCTTGCTC CTGAGTATGA AAAAGCTGCC TCAGAGCTGA GTAGTCATGA 241 CCCTCCAATT GTTCTAGCTA AGTATGATGC AAATGATGAA GCCAATAGAG AACTTTCAAA 301 ACAGTACG Predicted gene structure (within gDNA segment 1019 to 3835): Exon 1 1619 1792 ( 174 n); cDNA 1 174 ( 174 n); score: 1.000 Intron 1 1793 2968 (1176 n); Pd: 1.000 (s: 1.00), Pa: 0.997 (s: 0) Exon 2 2969 2999 ( 31 n); cDNA 175 205 ( 31 n); score: 1.000 Intron 2 3000 3122 ( 123 n); Pd: 0.917 (s: 0), Pa: 0.997 (s: 1.00) Exon 3 3123 3225 ( 103 n); cDNA 206 308 ( 103 n); score: 1.000 MATCH C06HBa0054K13.1-11+ SGN-E322777+ 1.000 308 1.000 C PGS_C06HBa0054K13.1-11+_SGN-E322777+ (1619 1792,2969 2999,3123 3225) Alignment (genomic DNA sequence = upper lines): TCAGACAAAA ATGGCAAAGA GTGGCATTTT GGTAATTGTT TCAGCTCTTG TTGTTCTTGC 1678 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCAGACAAAA ATGGCAAAGA GTGGCATTTT GGTAATTGTT TCAGCTCTTG TTGTTCTTGC 60 AGTTTGTGGT GTTTTTGCTG AGGAGAACGA ATATGTGTTG ACTTTGGACC ATTCTAACCT 1738 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTTTGTGGT GTTTTTGCTG AGGAGAACGA ATATGTGTTG ACTTTGGACC ATTCTAACCT 120 CACTGAGACT GTTGCTAAGC ACAACTTCAT TGTTGTTGAA TTCTATGCAC CTTGGTAAGT 1798 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||| CACTGAGACT GTTGCTAAGC ACAACTTCAT TGTTGTTGAA TTCTATGCAC CTTG...... 174 CATCTGCTGT TTTTTTTTCT ATTTATTTTC TTGAAAAAAG TTCATTTTTT TTGCTTGTTG 1858 .......... .......... .......... .......... .......... .......... 174 AATCTGTATG TGCAGAATGT AATGAATGAT TGGATGTAAG GGGTTTTGTT TTTGATCTGT 1918 .......... .......... .......... .......... .......... .......... 174 TTTTTTTTTG TTATTTTAGT GAATTTTTGC TGTAATTTTT TTGTTTTCAT AAGCTGTGTG 1978 .......... .......... .......... .......... .......... .......... 174 AGGAATGCAT CAAGATCAGT TCTTTATGTT AATTTGTCTT AAAGGGTTCA TCAAGGACCC 2038 .......... .......... .......... .......... .......... .......... 174 CTTTGGCTCT ACTTTGCTGT TCCTGTTTTT TTTTTTTTTT TGGAGTTTTA TCTTTTTGCT 2098 .......... .......... .......... .......... .......... .......... 174 GGTTTCTCTG GCTTTAGAAA CTGCATGTGC AGAAGATAAT CAATGACTGG TTCTTTTTCT 2158 .......... .......... .......... .......... .......... .......... 174 TTTGGGGAAT TTAAGGTTTT GTTATGTAAA TGGTTTTTTT TTCTGATTTT TCTGCTGTAA 2218 .......... .......... .......... .......... .......... .......... 174 TTTTTTATTT TACACATTGA CTTGAATTTG TCTGAAAGGG TTTTTCAAGG ATCCTTTTGT 2278 .......... .......... .......... .......... .......... .......... 174 TGATGGATGT ATTTTGATTT GTGGATTGAT TGAGGTTTTA AGGCTTTTTC TGTAAAAAGC 2338 .......... .......... .......... .......... .......... .......... 174 TTCTTCTTTT AATTCATGGT TGATGCTTCT AGAATCTGGA TTTGCTTGAT GAGTTCTAGG 2398 .......... .......... .......... .......... .......... .......... 174 TTATAAGGTT TCCTCTTTTT ATTTAATTTG CTGCTTGTTT TTTGGTATTT AAAATCTCTG 2458 .......... .......... .......... .......... .......... .......... 174 TGTCCAGAAT TTTACAAAAA TATTAATAAA TCTGGATTTG TCTTTGTGTT CTGTGTTGCT 2518 .......... .......... .......... .......... .......... .......... 174 GCAAGTTAAT GGTTTTTCCA TTTCTGTGAC AGTCTAGTCA ATTGGAATGT AAAATCTGTT 2578 .......... .......... .......... .......... .......... .......... 174 TTTCTATTTT TGTGTATGTA TTTGGATCTA TGTCAAGAGG TTCCAGTGAT CTGTGTTAAT 2638 .......... .......... .......... .......... .......... .......... 174 AGAAGTGATT CTTTTAGCCA AATTGTCTTC TTGTTATGTG TAGTGGTGGA TCCAATGTAA 2698 .......... .......... .......... .......... .......... .......... 174 TGGTACCAGG TTCATCTGAA CCTAATAGTT TCGACTCGGA GCATAAATTT ATGTGTAGGA 2758 .......... .......... .......... .......... .......... .......... 174 ATTCACTAAA ATTGCAATAA ATAGTAGACA TGAATGATGT TGATGACGAC ATGCTTGAGA 2818 .......... .......... .......... .......... .......... .......... 174 TGGTTGTATT AATAGCTTGC ATTAGTTTCG ATCTTTTCTA TGGTATCAAT TCCCATAGTT 2878 .......... .......... .......... .......... .......... .......... 174 ATACGTTGTT GTCGAAATGT TTATTTAGTT ATTCTTTGAC ATGAAATTTT TTTACTTTAT 2938 .......... .......... .......... .......... .......... .......... 174 GAGTAACTGA TAATATACTT GCAATTACAG GTGTGGACAC TGTAAGAGTC TTGCTCCTGA 2998 |||||||||| |||||||||| |||||||||| .......... .......... .......... GTGTGGACAC TGTAAGAGTC TTGCTCCTGA 204 GGTACACTTT CTTCTATACA GTGCTTAATG AAGGAAGGAA TATCATTTTT CTCTGTCATT 3058 | G......... .......... .......... .......... .......... .......... 205 ATGTTTTTTC TTGGCATTTT CAATCTATGC AACTGATTTA ATGTTAAATT ATGTTTCTTT 3118 .......... .......... .......... .......... .......... .......... 205 CCAGTATGAA AAAGCTGCCT CAGAGCTGAG TAGTCATGAC CCTCCAATTG TTCTAGCTAA 3178 |||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ....TATGAA AAAGCTGCCT CAGAGCTGAG TAGTCATGAC CCTCCAATTG TTCTAGCTAA 261 GTATGATGCA AATGATGAAG CCAATAGAGA ACTTTCAAAA CAGTACG 3225 |||||||||| |||||||||| |||||||||| |||||||||| ||||||| GTATGATGCA AATGATGAAG CCAATAGAGA ACTTTCAAAA CAGTACG 308 hqPGS_C06HBa0054K13.1-11+_SGN-E322777+ (1619 1792,2969 2999,3123 3225) ******************************************************************************** EST sequence 85 +strand 378 n (File: SGN-E259139+) 1 CTGCAGGCAA AAATGGCAAA GAGTGGCATT TTGGTAATTG TTTCAGCTCT TGTTGTTCTT 61 GCAGTTTGTG GTGTTTTTGC TGAGGAGAAC GAATATGTGT TGACTTTGGA CCATTCTAAC 121 CTCACTGAGA CTGTTGCTAA GCACAACTTC ATTGTTGTTG AATTCTATGC ACCTTGGTGT 181 GGACACTGTA AGAGTCTTGC TCCTGAGTAT GAAAAAGCTG CCTCAGAGCT GAGTAGTCAT 241 GACCCTCCAA TTGTTCTAGC TAAGTATGAT GCAAATGATG AAGCCAATAG AGGACTTTCA 301 AAACAGTACG AGATCCAGGG TTTCCCAACT ATTAAGATAT TGAGAGATGG AGGAAAGAAA 361 GTTCAAGACT ATAACGGT Predicted gene structure (within gDNA segment 954 to 3903): Exon 1 1620 1792 ( 173 n); cDNA 4 176 ( 173 n); score: 0.994 Intron 1 1793 2968 (1176 n); Pd: 1.000 (s: 1.00), Pa: 0.997 (s: 0) Exon 2 2969 2999 ( 31 n); cDNA 177 207 ( 31 n); score: 1.000 Intron 2 3000 3122 ( 123 n); Pd: 0.917 (s: 0), Pa: 0.997 (s: 1.00) Exon 3 3123 3293 ( 171 n); cDNA 208 378 ( 171 n); score: 0.994 MATCH C06HBa0054K13.1-11+ SGN-E259139+ 0.994 375 0.992 C PGS_C06HBa0054K13.1-11+_SGN-E259139+ (1620 1792,2969 2999,3123 3293) Alignment (genomic DNA sequence = upper lines): CAGACAAAAA TGGCAAAGAG TGGCATTTTG GTAATTGTTT CAGCTCTTGT TGTTCTTGCA 1679 ||| |||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAGGCAAAAA TGGCAAAGAG TGGCATTTTG GTAATTGTTT CAGCTCTTGT TGTTCTTGCA 63 GTTTGTGGTG TTTTTGCTGA GGAGAACGAA TATGTGTTGA CTTTGGACCA TTCTAACCTC 1739 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTTGTGGTG TTTTTGCTGA GGAGAACGAA TATGTGTTGA CTTTGGACCA TTCTAACCTC 123 ACTGAGACTG TTGCTAAGCA CAACTTCATT GTTGTTGAAT TCTATGCACC TTGGTAAGTC 1799 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||| ACTGAGACTG TTGCTAAGCA CAACTTCATT GTTGTTGAAT TCTATGCACC TTG....... 176 ATCTGCTGTT TTTTTTTCTA TTTATTTTCT TGAAAAAAGT TCATTTTTTT TGCTTGTTGA 1859 .......... .......... .......... .......... .......... .......... 176 ATCTGTATGT GCAGAATGTA ATGAATGATT GGATGTAAGG GGTTTTGTTT TTGATCTGTT 1919 .......... .......... .......... .......... .......... .......... 176 TTTTTTTTGT TATTTTAGTG AATTTTTGCT GTAATTTTTT TGTTTTCATA AGCTGTGTGA 1979 .......... .......... .......... .......... .......... .......... 176 GGAATGCATC AAGATCAGTT CTTTATGTTA ATTTGTCTTA AAGGGTTCAT CAAGGACCCC 2039 .......... .......... .......... .......... .......... .......... 176 TTTGGCTCTA CTTTGCTGTT CCTGTTTTTT TTTTTTTTTT GGAGTTTTAT CTTTTTGCTG 2099 .......... .......... .......... .......... .......... .......... 176 GTTTCTCTGG CTTTAGAAAC TGCATGTGCA GAAGATAATC AATGACTGGT TCTTTTTCTT 2159 .......... .......... .......... .......... .......... .......... 176 TTGGGGAATT TAAGGTTTTG TTATGTAAAT GGTTTTTTTT TCTGATTTTT CTGCTGTAAT 2219 .......... .......... .......... .......... .......... .......... 176 TTTTTATTTT ACACATTGAC TTGAATTTGT CTGAAAGGGT TTTTCAAGGA TCCTTTTGTT 2279 .......... .......... .......... .......... .......... .......... 176 GATGGATGTA TTTTGATTTG TGGATTGATT GAGGTTTTAA GGCTTTTTCT GTAAAAAGCT 2339 .......... .......... .......... .......... .......... .......... 176 TCTTCTTTTA ATTCATGGTT GATGCTTCTA GAATCTGGAT TTGCTTGATG AGTTCTAGGT 2399 .......... .......... .......... .......... .......... .......... 176 TATAAGGTTT CCTCTTTTTA TTTAATTTGC TGCTTGTTTT TTGGTATTTA AAATCTCTGT 2459 .......... .......... .......... .......... .......... .......... 176 GTCCAGAATT TTACAAAAAT ATTAATAAAT CTGGATTTGT CTTTGTGTTC TGTGTTGCTG 2519 .......... .......... .......... .......... .......... .......... 176 CAAGTTAATG GTTTTTCCAT TTCTGTGACA GTCTAGTCAA TTGGAATGTA AAATCTGTTT 2579 .......... .......... .......... .......... .......... .......... 176 TTCTATTTTT GTGTATGTAT TTGGATCTAT GTCAAGAGGT TCCAGTGATC TGTGTTAATA 2639 .......... .......... .......... .......... .......... .......... 176 GAAGTGATTC TTTTAGCCAA ATTGTCTTCT TGTTATGTGT AGTGGTGGAT CCAATGTAAT 2699 .......... .......... .......... .......... .......... .......... 176 GGTACCAGGT TCATCTGAAC CTAATAGTTT CGACTCGGAG CATAAATTTA TGTGTAGGAA 2759 .......... .......... .......... .......... .......... .......... 176 TTCACTAAAA TTGCAATAAA TAGTAGACAT GAATGATGTT GATGACGACA TGCTTGAGAT 2819 .......... .......... .......... .......... .......... .......... 176 GGTTGTATTA ATAGCTTGCA TTAGTTTCGA TCTTTTCTAT GGTATCAATT CCCATAGTTA 2879 .......... .......... .......... .......... .......... .......... 176 TACGTTGTTG TCGAAATGTT TATTTAGTTA TTCTTTGACA TGAAATTTTT TTACTTTATG 2939 .......... .......... .......... .......... .......... .......... 176 AGTAACTGAT AATATACTTG CAATTACAGG TGTGGACACT GTAAGAGTCT TGCTCCTGAG 2999 | |||||||||| |||||||||| |||||||||| .......... .......... .........G TGTGGACACT GTAAGAGTCT TGCTCCTGAG 207 GTACACTTTC TTCTATACAG TGCTTAATGA AGGAAGGAAT ATCATTTTTC TCTGTCATTA 3059 .......... .......... .......... .......... .......... .......... 207 TGTTTTTTCT TGGCATTTTC AATCTATGCA ACTGATTTAA TGTTAAATTA TGTTTCTTTC 3119 .......... .......... .......... .......... .......... .......... 207 CAGTATGAAA AAGCTGCCTC AGAGCTGAGT AGTCATGACC CTCCAATTGT TCTAGCTAAG 3179 ||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ...TATGAAA AAGCTGCCTC AGAGCTGAGT AGTCATGACC CTCCAATTGT TCTAGCTAAG 264 TATGATGCAA ATGATGAAGC CAATAGAGAA CTTTCAAAAC AGTACGAGAT CCAGGGTTTC 3239 |||||||||| |||||||||| |||||||| | |||||||||| |||||||||| |||||||||| TATGATGCAA ATGATGAAGC CAATAGAGGA CTTTCAAAAC AGTACGAGAT CCAGGGTTTC 324 CCAACTATTA AGATATTGAG AGATGGAGGA AAGAAAGTTC AAGACTATAA CGGT 3293 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||| CCAACTATTA AGATATTGAG AGATGGAGGA AAGAAAGTTC AAGACTATAA CGGT 378 hqPGS_C06HBa0054K13.1-11+_SGN-E259139+ (1620 1792,2969 2999,3123 3293) ******************************************************************************** EST sequence 16 +strand 662 n (File: SGN-E326107+) 1 GACAAAAATG GCAAAGAGTG GCATTTTGGT AATTGTTTCA GCTCTTGTTG TTCTTGCAGT 61 TTGTGGTGTT TTTGCTGAGG AGAACGAATA TGTGTTGACT TTGGACCATT CTAACCTCAC 121 TGAGACTGTT GCTAAGCACA ACTTCATTGT TGTTGAATTC TATGCACCTT GGTGTGGACA 181 CTGTAAGAGT CTTGCTCCTG AGTATGAAAA AGCTGCCTCA GAGCTGAGTA GTCATGACCC 241 TCCAATTGTT CTAGCTAAGT ATGATGCAAA TGATGAAGCC AATAGAGAAC TTTCAAAACA 301 GTACGAGATC CAGGGTTTCC CAACTATTAA GATATTGAGA GATGGAGGAA AGAAAGTTCA 361 AGACTATAAC GGTCCTCGTG AAGCAGCTGG TATTGTATCC TACTTGAAGA AACAAGTGGG 421 TCCTGCATCT GCTGAAATCA AGTCGAAGGA AGATGCCACA AACCTTATTG ATGAGAAAAG 481 TATCTTTGTT GTTGGTATAT TTCCAGACCC CTCCGGAGAG AAATTCGAGA ACTATTTTAC 541 GCTAGCTGAA AACTGCGAGG CGAGTTCGAT TTTGCTCACA CTGGTGATGC TAAACACCTC 601 CCTCGGGGTG GACCAGTCAA CAAGCCCACT CTTCGTCTTC TAAAGCCATT TGATGAACTC 661 TT Predicted gene structure (within gDNA segment 1022 to 4291): Exon 1 1622 1792 ( 171 n); cDNA 1 171 ( 171 n); score: 1.000 Intron 1 1793 2968 (1176 n); Pd: 1.000 (s: 1.00), Pa: 0.997 (s: 0) Exon 2 2969 2999 ( 31 n); cDNA 172 202 ( 31 n); score: 1.000 Intron 2 3000 3122 ( 123 n); Pd: 0.917 (s: 0), Pa: 0.997 (s: 1.00) Exon 3 3123 3410 ( 288 n); cDNA 203 490 ( 288 n); score: 1.000 Intron 3 3411 3508 ( 98 n); Pd: 0.907 (s: 1.00), Pa: 0.997 (s: 0.98) Exon 4 3509 3681 ( 173 n); cDNA 491 662 ( 172 n); score: 0.983 MATCH C06HBa0054K13.1-11+ SGN-E326107+ 0.995 663 1.002 C PGS_C06HBa0054K13.1-11+_SGN-E326107+ (1622 1792,2969 2999,3123 3410,3509 3681) Alignment (genomic DNA sequence = upper lines): GACAAAAATG GCAAAGAGTG GCATTTTGGT AATTGTTTCA GCTCTTGTTG TTCTTGCAGT 1681 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GACAAAAATG GCAAAGAGTG GCATTTTGGT AATTGTTTCA GCTCTTGTTG TTCTTGCAGT 60 TTGTGGTGTT TTTGCTGAGG AGAACGAATA TGTGTTGACT TTGGACCATT CTAACCTCAC 1741 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGTGGTGTT TTTGCTGAGG AGAACGAATA TGTGTTGACT TTGGACCATT CTAACCTCAC 120 TGAGACTGTT GCTAAGCACA ACTTCATTGT TGTTGAATTC TATGCACCTT GGTAAGTCAT 1801 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| | TGAGACTGTT GCTAAGCACA ACTTCATTGT TGTTGAATTC TATGCACCTT G......... 171 CTGCTGTTTT TTTTTCTATT TATTTTCTTG AAAAAAGTTC ATTTTTTTTG CTTGTTGAAT 1861 .......... .......... .......... .......... .......... .......... 171 CTGTATGTGC AGAATGTAAT GAATGATTGG ATGTAAGGGG TTTTGTTTTT GATCTGTTTT 1921 .......... .......... .......... .......... .......... .......... 171 TTTTTTGTTA TTTTAGTGAA TTTTTGCTGT AATTTTTTTG TTTTCATAAG CTGTGTGAGG 1981 .......... .......... .......... .......... .......... .......... 171 AATGCATCAA GATCAGTTCT TTATGTTAAT TTGTCTTAAA GGGTTCATCA AGGACCCCTT 2041 .......... .......... .......... .......... .......... .......... 171 TGGCTCTACT TTGCTGTTCC TGTTTTTTTT TTTTTTTTGG AGTTTTATCT TTTTGCTGGT 2101 .......... .......... .......... .......... .......... .......... 171 TTCTCTGGCT TTAGAAACTG CATGTGCAGA AGATAATCAA TGACTGGTTC TTTTTCTTTT 2161 .......... .......... .......... .......... .......... .......... 171 GGGGAATTTA AGGTTTTGTT ATGTAAATGG TTTTTTTTTC TGATTTTTCT GCTGTAATTT 2221 .......... .......... .......... .......... .......... .......... 171 TTTATTTTAC ACATTGACTT GAATTTGTCT GAAAGGGTTT TTCAAGGATC CTTTTGTTGA 2281 .......... .......... .......... .......... .......... .......... 171 TGGATGTATT TTGATTTGTG GATTGATTGA GGTTTTAAGG CTTTTTCTGT AAAAAGCTTC 2341 .......... .......... .......... .......... .......... .......... 171 TTCTTTTAAT TCATGGTTGA TGCTTCTAGA ATCTGGATTT GCTTGATGAG TTCTAGGTTA 2401 .......... .......... .......... .......... .......... .......... 171 TAAGGTTTCC TCTTTTTATT TAATTTGCTG CTTGTTTTTT GGTATTTAAA ATCTCTGTGT 2461 .......... .......... .......... .......... .......... .......... 171 CCAGAATTTT ACAAAAATAT TAATAAATCT GGATTTGTCT TTGTGTTCTG TGTTGCTGCA 2521 .......... .......... .......... .......... .......... .......... 171 AGTTAATGGT TTTTCCATTT CTGTGACAGT CTAGTCAATT GGAATGTAAA ATCTGTTTTT 2581 .......... .......... .......... .......... .......... .......... 171 CTATTTTTGT GTATGTATTT GGATCTATGT CAAGAGGTTC CAGTGATCTG TGTTAATAGA 2641 .......... .......... .......... .......... .......... .......... 171 AGTGATTCTT TTAGCCAAAT TGTCTTCTTG TTATGTGTAG TGGTGGATCC AATGTAATGG 2701 .......... .......... .......... .......... .......... .......... 171 TACCAGGTTC ATCTGAACCT AATAGTTTCG ACTCGGAGCA TAAATTTATG TGTAGGAATT 2761 .......... .......... .......... .......... .......... .......... 171 CACTAAAATT GCAATAAATA GTAGACATGA ATGATGTTGA TGACGACATG CTTGAGATGG 2821 .......... .......... .......... .......... .......... .......... 171 TTGTATTAAT AGCTTGCATT AGTTTCGATC TTTTCTATGG TATCAATTCC CATAGTTATA 2881 .......... .......... .......... .......... .......... .......... 171 CGTTGTTGTC GAAATGTTTA TTTAGTTATT CTTTGACATG AAATTTTTTT ACTTTATGAG 2941 .......... .......... .......... .......... .......... .......... 171 TAACTGATAA TATACTTGCA ATTACAGGTG TGGACACTGT AAGAGTCTTG CTCCTGAGGT 3001 ||| |||||||||| |||||||||| |||||||| .......... .......... .......GTG TGGACACTGT AAGAGTCTTG CTCCTGAG.. 202 ACACTTTCTT CTATACAGTG CTTAATGAAG GAAGGAATAT CATTTTTCTC TGTCATTATG 3061 .......... .......... .......... .......... .......... .......... 202 TTTTTTCTTG GCATTTTCAA TCTATGCAAC TGATTTAATG TTAAATTATG TTTCTTTCCA 3121 .......... .......... .......... .......... .......... .......... 202 GTATGAAAAA GCTGCCTCAG AGCTGAGTAG TCATGACCCT CCAATTGTTC TAGCTAAGTA 3181 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .TATGAAAAA GCTGCCTCAG AGCTGAGTAG TCATGACCCT CCAATTGTTC TAGCTAAGTA 261 TGATGCAAAT GATGAAGCCA ATAGAGAACT TTCAAAACAG TACGAGATCC AGGGTTTCCC 3241 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGATGCAAAT GATGAAGCCA ATAGAGAACT TTCAAAACAG TACGAGATCC AGGGTTTCCC 321 AACTATTAAG ATATTGAGAG ATGGAGGAAA GAAAGTTCAA GACTATAACG GTCCTCGTGA 3301 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACTATTAAG ATATTGAGAG ATGGAGGAAA GAAAGTTCAA GACTATAACG GTCCTCGTGA 381 AGCAGCTGGT ATTGTATCCT ACTTGAAGAA ACAAGTGGGT CCTGCATCTG CTGAAATCAA 3361 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCAGCTGGT ATTGTATCCT ACTTGAAGAA ACAAGTGGGT CCTGCATCTG CTGAAATCAA 441 GTCGAAGGAA GATGCCACAA ACCTTATTGA TGAGAAAAGT ATCTTTGTTG TAAGTGGTGA 3421 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| GTCGAAGGAA GATGCCACAA ACCTTATTGA TGAGAAAAGT ATCTTTGTT. .......... 490 TACTTTTGAT GTTTTACTTA TCATTACTGA AGTTTATTTT CAGCATGCCA TAGCTTCTTG 3481 .......... .......... .......... .......... .......... .......... 490 CTGTCTAAAA TCTTTCTGTT TCTTTAGGTT GGTATATTTC CAGACCCCTC CGGAGAGAAA 3541 ||| |||||||||| |||||||||| |||||||||| .......... .......... .......GTT GGTATATTTC CAGACCCCTC CGGAGAGAAA 523 TTCGAGAACT ATTTAACGCT AGCTGAAAAA CTGCGAGGCG AGTTCGATTT TGCTCACACT 3601 |||||||||| |||| ||||| ||||| |||| |||||||||| |||||||||| |||||||||| TTCGAGAACT ATTTTACGCT AGCTG-AAAA CTGCGAGGCG AGTTCGATTT TGCTCACACT 582 GTTGATGCTA AACACCTCCC TCGGGGTGGA CCAGTCAACA AGCCCACTCT TCGTCTTCTA 3661 | |||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGTGATGCTA AACACCTCCC TCGGGGTGGA CCAGTCAACA AGCCCACTCT TCGTCTTCTA 642 AAGCCATTTG ATGAACTCTT 3681 |||||||||| |||||||||| AAGCCATTTG ATGAACTCTT 662 hqPGS_C06HBa0054K13.1-11+_SGN-E326107+ (1622 1792,2969 2999,3123 3410,3509 3681) ******************************************************************************** EST sequence 21 +strand 473 n (File: SGN-E327026+) 1 GACAAAAATG GCAAAGAGTG GCATTTTGGT AATTGTTTCA GCTCTTGTTG TTCTTGCAGT 61 TTGTGGTGTT TTTGCTGAGG AGAACGAATA TGTGTTGACT TTGGACCATT CTAACCTCAC 121 TGAGACTGTT GCTAAGCACA ACTTCATTGT TGTTGAATTC TATGCACCTT GGTGTGGACA 181 CTGTAAGAGT CTTGCTCCTG AGTATGAAAA AGCTGCCTCA GAGCTGAGTA GTCATGACCC 241 TCCAATTGTT CTAGCTAAGT ATGATGCAAA TGATGAAGCC AATAGAGAAC TTTCAAAACA 301 GTACGAGATC CAGGGTTTCC CAACTATTAA GATATTGAGA GATGGAGGAA AGAAAGTTCA 361 AGACTATAAC GGTCCTCGTG AAGCAGCTGG TATTGTATCC TACTTGAAGA AACAAGTGGG 421 TCCTGCATCT GCTGAAATCA AGTCGAAGGA AGATGCCACA AACCTTATTG ATG Predicted gene structure (within gDNA segment 1022 to 4003): Exon 1 1622 1792 ( 171 n); cDNA 1 171 ( 171 n); score: 1.000 Intron 1 1793 2968 (1176 n); Pd: 1.000 (s: 1.00), Pa: 0.997 (s: 0) Exon 2 2969 2999 ( 31 n); cDNA 172 202 ( 31 n); score: 1.000 Intron 2 3000 3122 ( 123 n); Pd: 0.917 (s: 0), Pa: 0.997 (s: 1.00) Exon 3 3123 3393 ( 271 n); cDNA 203 473 ( 271 n); score: 1.000 MATCH C06HBa0054K13.1-11+ SGN-E327026+ 1.000 473 1.000 C PGS_C06HBa0054K13.1-11+_SGN-E327026+ (1622 1792,2969 2999,3123 3393) Alignment (genomic DNA sequence = upper lines): GACAAAAATG GCAAAGAGTG GCATTTTGGT AATTGTTTCA GCTCTTGTTG TTCTTGCAGT 1681 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GACAAAAATG GCAAAGAGTG GCATTTTGGT AATTGTTTCA GCTCTTGTTG TTCTTGCAGT 60 TTGTGGTGTT TTTGCTGAGG AGAACGAATA TGTGTTGACT TTGGACCATT CTAACCTCAC 1741 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGTGGTGTT TTTGCTGAGG AGAACGAATA TGTGTTGACT TTGGACCATT CTAACCTCAC 120 TGAGACTGTT GCTAAGCACA ACTTCATTGT TGTTGAATTC TATGCACCTT GGTAAGTCAT 1801 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| | TGAGACTGTT GCTAAGCACA ACTTCATTGT TGTTGAATTC TATGCACCTT G......... 171 CTGCTGTTTT TTTTTCTATT TATTTTCTTG AAAAAAGTTC ATTTTTTTTG CTTGTTGAAT 1861 .......... .......... .......... .......... .......... .......... 171 CTGTATGTGC AGAATGTAAT GAATGATTGG ATGTAAGGGG TTTTGTTTTT GATCTGTTTT 1921 .......... .......... .......... .......... .......... .......... 171 TTTTTTGTTA TTTTAGTGAA TTTTTGCTGT AATTTTTTTG TTTTCATAAG CTGTGTGAGG 1981 .......... .......... .......... .......... .......... .......... 171 AATGCATCAA GATCAGTTCT TTATGTTAAT TTGTCTTAAA GGGTTCATCA AGGACCCCTT 2041 .......... .......... .......... .......... .......... .......... 171 TGGCTCTACT TTGCTGTTCC TGTTTTTTTT TTTTTTTTGG AGTTTTATCT TTTTGCTGGT 2101 .......... .......... .......... .......... .......... .......... 171 TTCTCTGGCT TTAGAAACTG CATGTGCAGA AGATAATCAA TGACTGGTTC TTTTTCTTTT 2161 .......... .......... .......... .......... .......... .......... 171 GGGGAATTTA AGGTTTTGTT ATGTAAATGG TTTTTTTTTC TGATTTTTCT GCTGTAATTT 2221 .......... .......... .......... .......... .......... .......... 171 TTTATTTTAC ACATTGACTT GAATTTGTCT GAAAGGGTTT TTCAAGGATC CTTTTGTTGA 2281 .......... .......... .......... .......... .......... .......... 171 TGGATGTATT TTGATTTGTG GATTGATTGA GGTTTTAAGG CTTTTTCTGT AAAAAGCTTC 2341 .......... .......... .......... .......... .......... .......... 171 TTCTTTTAAT TCATGGTTGA TGCTTCTAGA ATCTGGATTT GCTTGATGAG TTCTAGGTTA 2401 .......... .......... .......... .......... .......... .......... 171 TAAGGTTTCC TCTTTTTATT TAATTTGCTG CTTGTTTTTT GGTATTTAAA ATCTCTGTGT 2461 .......... .......... .......... .......... .......... .......... 171 CCAGAATTTT ACAAAAATAT TAATAAATCT GGATTTGTCT TTGTGTTCTG TGTTGCTGCA 2521 .......... .......... .......... .......... .......... .......... 171 AGTTAATGGT TTTTCCATTT CTGTGACAGT CTAGTCAATT GGAATGTAAA ATCTGTTTTT 2581 .......... .......... .......... .......... .......... .......... 171 CTATTTTTGT GTATGTATTT GGATCTATGT CAAGAGGTTC CAGTGATCTG TGTTAATAGA 2641 .......... .......... .......... .......... .......... .......... 171 AGTGATTCTT TTAGCCAAAT TGTCTTCTTG TTATGTGTAG TGGTGGATCC AATGTAATGG 2701 .......... .......... .......... .......... .......... .......... 171 TACCAGGTTC ATCTGAACCT AATAGTTTCG ACTCGGAGCA TAAATTTATG TGTAGGAATT 2761 .......... .......... .......... .......... .......... .......... 171 CACTAAAATT GCAATAAATA GTAGACATGA ATGATGTTGA TGACGACATG CTTGAGATGG 2821 .......... .......... .......... .......... .......... .......... 171 TTGTATTAAT AGCTTGCATT AGTTTCGATC TTTTCTATGG TATCAATTCC CATAGTTATA 2881 .......... .......... .......... .......... .......... .......... 171 CGTTGTTGTC GAAATGTTTA TTTAGTTATT CTTTGACATG AAATTTTTTT ACTTTATGAG 2941 .......... .......... .......... .......... .......... .......... 171 TAACTGATAA TATACTTGCA ATTACAGGTG TGGACACTGT AAGAGTCTTG CTCCTGAGGT 3001 ||| |||||||||| |||||||||| |||||||| .......... .......... .......GTG TGGACACTGT AAGAGTCTTG CTCCTGAG.. 202 ACACTTTCTT CTATACAGTG CTTAATGAAG GAAGGAATAT CATTTTTCTC TGTCATTATG 3061 .......... .......... .......... .......... .......... .......... 202 TTTTTTCTTG GCATTTTCAA TCTATGCAAC TGATTTAATG TTAAATTATG TTTCTTTCCA 3121 .......... .......... .......... .......... .......... .......... 202 GTATGAAAAA GCTGCCTCAG AGCTGAGTAG TCATGACCCT CCAATTGTTC TAGCTAAGTA 3181 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .TATGAAAAA GCTGCCTCAG AGCTGAGTAG TCATGACCCT CCAATTGTTC TAGCTAAGTA 261 TGATGCAAAT GATGAAGCCA ATAGAGAACT TTCAAAACAG TACGAGATCC AGGGTTTCCC 3241 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGATGCAAAT GATGAAGCCA ATAGAGAACT TTCAAAACAG TACGAGATCC AGGGTTTCCC 321 AACTATTAAG ATATTGAGAG ATGGAGGAAA GAAAGTTCAA GACTATAACG GTCCTCGTGA 3301 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACTATTAAG ATATTGAGAG ATGGAGGAAA GAAAGTTCAA GACTATAACG GTCCTCGTGA 381 AGCAGCTGGT ATTGTATCCT ACTTGAAGAA ACAAGTGGGT CCTGCATCTG CTGAAATCAA 3361 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCAGCTGGT ATTGTATCCT ACTTGAAGAA ACAAGTGGGT CCTGCATCTG CTGAAATCAA 441 GTCGAAGGAA GATGCCACAA ACCTTATTGA TG 3393 |||||||||| |||||||||| |||||||||| || GTCGAAGGAA GATGCCACAA ACCTTATTGA TG 473 hqPGS_C06HBa0054K13.1-11+_SGN-E327026+ (1622 1792,2969 2999,3123 3393) ******************************************************************************** EST sequence 34 +strand 694 n (File: SGN-E339929+) 1 ACAAAAATGG CAAAGAGTGG CATTTTGGTA ATTGTTTCAG CTCTTGTTGT TCTTGCAGTT 61 TGTGGTGTTT TTGCTGAGGA GAACGAATAT GTGTTGACTT TGGACCATTC TAACCTCACT 121 GAGACTGTTG CTAAGCACAA CTTCATTGTT GTTGAATTCT ATGCACCTTG GTGTGGACAC 181 TGTAAGAGTC TTGCTCCTGA GTATGAAAAA GCTGCCTCAG AGCTGAGTAG TCATGACCCT 241 CCAATTGTTC TAGCTAAGTA TGATGCAAAT GATGAAGCCA ATAGAGAACT TTCAAAACAG 301 TACGAGATCC AGGGTTTCCC AACTATTAAG ATATTGAGAG ATGGAGGAAA GAAAGTTCAA 361 GACTATAACG GTCCTCGTGA AGCAGCTGGT ATTGTATCCT ACTTGAAGAA ACAAGTGGGT 421 CCTGCATCTG CTGAAATCAA GTCGAAGGAA GATGCCACAA ACCTTATTGA TGAGAAAAGT 481 ATCTTTGTTG TTGGTATATT TCCAGACCCC TCCGGAGAGA AATTCGAGAA CTATTTAACG 541 CTAGCTGAAA AACTGCGAGG CGAGTTCGAT TNTGCTCACA CTGTTGATGC TAAACACCTC 601 CCTCGGGGTG GACCAGTCAA CAAGCCCACT CTTCGTCTTC TAAAGCCATT TGATGAACTC 661 TTTGTTGATT TTGAGGACTT TGATGTCGAT GCAT Predicted gene structure (within gDNA segment 1023 to 4485): Exon 1 1623 1792 ( 170 n); cDNA 1 170 ( 170 n); score: 1.000 Intron 1 1793 2968 (1176 n); Pd: 1.000 (s: 1.00), Pa: 0.997 (s: 0) Exon 2 2969 2999 ( 31 n); cDNA 171 201 ( 31 n); score: 1.000 Intron 2 3000 3122 ( 123 n); Pd: 0.917 (s: 0), Pa: 0.997 (s: 1.00) Exon 3 3123 3410 ( 288 n); cDNA 202 489 ( 288 n); score: 1.000 Intron 3 3411 3508 ( 98 n); Pd: 0.907 (s: 1.00), Pa: 0.997 (s: 1.00) Exon 4 3509 3694 ( 186 n); cDNA 490 675 ( 186 n); score: 0.995 Intron 4 3695 3809 ( 115 n); Pd: 0.988 (s: 1.00), Pa: 0.999 (s: 0) Exon 5 3810 3827 ( 18 n); cDNA 676 693 ( 18 n); score: 1.000 MATCH C06HBa0054K13.1-11+ SGN-E339929+ 0.998 693 0.999 C PGS_C06HBa0054K13.1-11+_SGN-E339929+ (1623 1792,2969 2999,3123 3410,3509 3694,3810 3827) Alignment (genomic DNA sequence = upper lines): ACAAAAATGG CAAAGAGTGG CATTTTGGTA ATTGTTTCAG CTCTTGTTGT TCTTGCAGTT 1682 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACAAAAATGG CAAAGAGTGG CATTTTGGTA ATTGTTTCAG CTCTTGTTGT TCTTGCAGTT 60 TGTGGTGTTT TTGCTGAGGA GAACGAATAT GTGTTGACTT TGGACCATTC TAACCTCACT 1742 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTGGTGTTT TTGCTGAGGA GAACGAATAT GTGTTGACTT TGGACCATTC TAACCTCACT 120 GAGACTGTTG CTAAGCACAA CTTCATTGTT GTTGAATTCT ATGCACCTTG GTAAGTCATC 1802 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGACTGTTG CTAAGCACAA CTTCATTGTT GTTGAATTCT ATGCACCTTG .......... 170 TGCTGTTTTT TTTTCTATTT ATTTTCTTGA AAAAAGTTCA TTTTTTTTGC TTGTTGAATC 1862 .......... .......... .......... .......... .......... .......... 170 TGTATGTGCA GAATGTAATG AATGATTGGA TGTAAGGGGT TTTGTTTTTG ATCTGTTTTT 1922 .......... .......... .......... .......... .......... .......... 170 TTTTTGTTAT TTTAGTGAAT TTTTGCTGTA ATTTTTTTGT TTTCATAAGC TGTGTGAGGA 1982 .......... .......... .......... .......... .......... .......... 170 ATGCATCAAG ATCAGTTCTT TATGTTAATT TGTCTTAAAG GGTTCATCAA GGACCCCTTT 2042 .......... .......... .......... .......... .......... .......... 170 GGCTCTACTT TGCTGTTCCT GTTTTTTTTT TTTTTTTGGA GTTTTATCTT TTTGCTGGTT 2102 .......... .......... .......... .......... .......... .......... 170 TCTCTGGCTT TAGAAACTGC ATGTGCAGAA GATAATCAAT GACTGGTTCT TTTTCTTTTG 2162 .......... .......... .......... .......... .......... .......... 170 GGGAATTTAA GGTTTTGTTA TGTAAATGGT TTTTTTTTCT GATTTTTCTG CTGTAATTTT 2222 .......... .......... .......... .......... .......... .......... 170 TTATTTTACA CATTGACTTG AATTTGTCTG AAAGGGTTTT TCAAGGATCC TTTTGTTGAT 2282 .......... .......... .......... .......... .......... .......... 170 GGATGTATTT TGATTTGTGG ATTGATTGAG GTTTTAAGGC TTTTTCTGTA AAAAGCTTCT 2342 .......... .......... .......... .......... .......... .......... 170 TCTTTTAATT CATGGTTGAT GCTTCTAGAA TCTGGATTTG CTTGATGAGT TCTAGGTTAT 2402 .......... .......... .......... .......... .......... .......... 170 AAGGTTTCCT CTTTTTATTT AATTTGCTGC TTGTTTTTTG GTATTTAAAA TCTCTGTGTC 2462 .......... .......... .......... .......... .......... .......... 170 CAGAATTTTA CAAAAATATT AATAAATCTG GATTTGTCTT TGTGTTCTGT GTTGCTGCAA 2522 .......... .......... .......... .......... .......... .......... 170 GTTAATGGTT TTTCCATTTC TGTGACAGTC TAGTCAATTG GAATGTAAAA TCTGTTTTTC 2582 .......... .......... .......... .......... .......... .......... 170 TATTTTTGTG TATGTATTTG GATCTATGTC AAGAGGTTCC AGTGATCTGT GTTAATAGAA 2642 .......... .......... .......... .......... .......... .......... 170 GTGATTCTTT TAGCCAAATT GTCTTCTTGT TATGTGTAGT GGTGGATCCA ATGTAATGGT 2702 .......... .......... .......... .......... .......... .......... 170 ACCAGGTTCA TCTGAACCTA ATAGTTTCGA CTCGGAGCAT AAATTTATGT GTAGGAATTC 2762 .......... .......... .......... .......... .......... .......... 170 ACTAAAATTG CAATAAATAG TAGACATGAA TGATGTTGAT GACGACATGC TTGAGATGGT 2822 .......... .......... .......... .......... .......... .......... 170 TGTATTAATA GCTTGCATTA GTTTCGATCT TTTCTATGGT ATCAATTCCC ATAGTTATAC 2882 .......... .......... .......... .......... .......... .......... 170 GTTGTTGTCG AAATGTTTAT TTAGTTATTC TTTGACATGA AATTTTTTTA CTTTATGAGT 2942 .......... .......... .......... .......... .......... .......... 170 AACTGATAAT ATACTTGCAA TTACAGGTGT GGACACTGTA AGAGTCTTGC TCCTGAGGTA 3002 |||| |||||||||| |||||||||| ||||||| .......... .......... ......GTGT GGACACTGTA AGAGTCTTGC TCCTGAG... 201 CACTTTCTTC TATACAGTGC TTAATGAAGG AAGGAATATC ATTTTTCTCT GTCATTATGT 3062 .......... .......... .......... .......... .......... .......... 201 TTTTTCTTGG CATTTTCAAT CTATGCAACT GATTTAATGT TAAATTATGT TTCTTTCCAG 3122 .......... .......... .......... .......... .......... .......... 201 TATGAAAAAG CTGCCTCAGA GCTGAGTAGT CATGACCCTC CAATTGTTCT AGCTAAGTAT 3182 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATGAAAAAG CTGCCTCAGA GCTGAGTAGT CATGACCCTC CAATTGTTCT AGCTAAGTAT 261 GATGCAAATG ATGAAGCCAA TAGAGAACTT TCAAAACAGT ACGAGATCCA GGGTTTCCCA 3242 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATGCAAATG ATGAAGCCAA TAGAGAACTT TCAAAACAGT ACGAGATCCA GGGTTTCCCA 321 ACTATTAAGA TATTGAGAGA TGGAGGAAAG AAAGTTCAAG ACTATAACGG TCCTCGTGAA 3302 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACTATTAAGA TATTGAGAGA TGGAGGAAAG AAAGTTCAAG ACTATAACGG TCCTCGTGAA 381 GCAGCTGGTA TTGTATCCTA CTTGAAGAAA CAAGTGGGTC CTGCATCTGC TGAAATCAAG 3362 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCAGCTGGTA TTGTATCCTA CTTGAAGAAA CAAGTGGGTC CTGCATCTGC TGAAATCAAG 441 TCGAAGGAAG ATGCCACAAA CCTTATTGAT GAGAAAAGTA TCTTTGTTGT AAGTGGTGAT 3422 |||||||||| |||||||||| |||||||||| |||||||||| |||||||| TCGAAGGAAG ATGCCACAAA CCTTATTGAT GAGAAAAGTA TCTTTGTT.. .......... 489 ACTTTTGATG TTTTACTTAT CATTACTGAA GTTTATTTTC AGCATGCCAT AGCTTCTTGC 3482 .......... .......... .......... .......... .......... .......... 489 TGTCTAAAAT CTTTCTGTTT CTTTAGGTTG GTATATTTCC AGACCCCTCC GGAGAGAAAT 3542 |||| |||||||||| |||||||||| |||||||||| .......... .......... ......GTTG GTATATTTCC AGACCCCTCC GGAGAGAAAT 523 TCGAGAACTA TTTAACGCTA GCTGAAAAAC TGCGAGGCGA GTTCGATTTT GCTCACACTG 3602 |||||||||| |||||||||| |||||||||| |||||||||| |||||||| | |||||||||| TCGAGAACTA TTTAACGCTA GCTGAAAAAC TGCGAGGCGA GTTCGATTNT GCTCACACTG 583 TTGATGCTAA ACACCTCCCT CGGGGTGGAC CAGTCAACAA GCCCACTCTT CGTCTTCTAA 3662 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGATGCTAA ACACCTCCCT CGGGGTGGAC CAGTCAACAA GCCCACTCTT CGTCTTCTAA 643 AGCCATTTGA TGAACTCTTT GTTGATTTTG AGGTATTACA GTTATCTGTG TATATTTTTA 3722 |||||||||| |||||||||| |||||||||| || AGCCATTTGA TGAACTCTTT GTTGATTTTG AG........ .......... .......... 675 TCTTTGATAC TCATTGTATT ATGGTTATGA GGCTCAACTC TGTCCTATGT TATCTTTTAA 3782 .......... .......... .......... .......... .......... .......... 675 TTGGCCATTG ATTGTACATA CTTGCAGGAC TTTGATGTCG ATGCA 3827 ||| |||||||||| ||||| .......... .......... .......GAC TTTGATGTCG ATGCA 693 hqPGS_C06HBa0054K13.1-11+_SGN-E339929+ (1623 1792,2969 2999,3123 3410,3509 3694,3810 3827) ******************************************************************************** EST sequence 77 +strand 692 n (File: SGN-E334958+) 1 ACAAAAATGG CAAAGAGTGG CATTTTGGTA ATTGTTTCAG CTCTTGTTGT TCTTGCAGTT 61 TGTGGTGTTT TTGCTGAGGA GAACGAATAT GTGTTGACTT TGGACCATTC TAACCTCACT 121 GAGACTGTTG CTAAGCACAA CTTCATTGTT GTTGAATTCT ATGCACCTTG GTGTGGACAC 181 TGTAAGAGTC TTGCTCCTGA GTATGAAAAA GCTGCCTCAG AGCTGAGTAG TCATGACCCT 241 CCAATTGTTC TAGCTAAGTA TGATGCAAAT GATGAAGCCA ATAGAGAACT TTCAAAACAG 301 TACGAGATCC AGGGTTTCCC AACTATTAAG ATATTGAGAG ATGGAGGAAA GAAAGTTCAA 361 GACTATAACG GTCCTCGTGA AGCAGCTGGT ATTGTATCCT ACTTGAAGAA ACAAGTGGGT 421 CCTGCATCTG CTGAAATCAA GTCGAAGGAA GATGCCACAA ACCTTATTGA TGAGAAAAGT 481 ATCTTTGTTG TTGGTATATT TCCAGACCCC TCCGGAGAGA AATTCGAGAA CTATTTAACG 541 CTAGCTGAAA AACTGCGAGG CGAGTTCGAT TNTGCTCACA CTGTTGATGC TAAACACCTC 601 CCTCGGGGTG GACCAGTCAA CAAGCCCACT CTTCGTCTTC TAAAGCCATT TGATGAACTC 661 TTTGTTGATT TTGAGGACTT TGATGTCGAT GC Predicted gene structure (within gDNA segment 1023 to 4465): Exon 1 1623 1792 ( 170 n); cDNA 1 170 ( 170 n); score: 1.000 Intron 1 1793 2968 (1176 n); Pd: 1.000 (s: 1.00), Pa: 0.997 (s: 0) Exon 2 2969 2999 ( 31 n); cDNA 171 201 ( 31 n); score: 1.000 Intron 2 3000 3122 ( 123 n); Pd: 0.917 (s: 0), Pa: 0.997 (s: 1.00) Exon 3 3123 3410 ( 288 n); cDNA 202 489 ( 288 n); score: 1.000 Intron 3 3411 3508 ( 98 n); Pd: 0.907 (s: 1.00), Pa: 0.997 (s: 1.00) Exon 4 3509 3694 ( 186 n); cDNA 490 675 ( 186 n); score: 0.995 Intron 4 3695 3809 ( 115 n); Pd: 0.988 (s: 1.00), Pa: 0.999 (s: 0) Exon 5 3810 3826 ( 17 n); cDNA 676 692 ( 17 n); score: 1.000 MATCH C06HBa0054K13.1-11+ SGN-E334958+ 0.998 692 1.000 C PGS_C06HBa0054K13.1-11+_SGN-E334958+ (1623 1792,2969 2999,3123 3410,3509 3694,3810 3826) Alignment (genomic DNA sequence = upper lines): ACAAAAATGG CAAAGAGTGG CATTTTGGTA ATTGTTTCAG CTCTTGTTGT TCTTGCAGTT 1682 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACAAAAATGG CAAAGAGTGG CATTTTGGTA ATTGTTTCAG CTCTTGTTGT TCTTGCAGTT 60 TGTGGTGTTT TTGCTGAGGA GAACGAATAT GTGTTGACTT TGGACCATTC TAACCTCACT 1742 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTGGTGTTT TTGCTGAGGA GAACGAATAT GTGTTGACTT TGGACCATTC TAACCTCACT 120 GAGACTGTTG CTAAGCACAA CTTCATTGTT GTTGAATTCT ATGCACCTTG GTAAGTCATC 1802 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGACTGTTG CTAAGCACAA CTTCATTGTT GTTGAATTCT ATGCACCTTG .......... 170 TGCTGTTTTT TTTTCTATTT ATTTTCTTGA AAAAAGTTCA TTTTTTTTGC TTGTTGAATC 1862 .......... .......... .......... .......... .......... .......... 170 TGTATGTGCA GAATGTAATG AATGATTGGA TGTAAGGGGT TTTGTTTTTG ATCTGTTTTT 1922 .......... .......... .......... .......... .......... .......... 170 TTTTTGTTAT TTTAGTGAAT TTTTGCTGTA ATTTTTTTGT TTTCATAAGC TGTGTGAGGA 1982 .......... .......... .......... .......... .......... .......... 170 ATGCATCAAG ATCAGTTCTT TATGTTAATT TGTCTTAAAG GGTTCATCAA GGACCCCTTT 2042 .......... .......... .......... .......... .......... .......... 170 GGCTCTACTT TGCTGTTCCT GTTTTTTTTT TTTTTTTGGA GTTTTATCTT TTTGCTGGTT 2102 .......... .......... .......... .......... .......... .......... 170 TCTCTGGCTT TAGAAACTGC ATGTGCAGAA GATAATCAAT GACTGGTTCT TTTTCTTTTG 2162 .......... .......... .......... .......... .......... .......... 170 GGGAATTTAA GGTTTTGTTA TGTAAATGGT TTTTTTTTCT GATTTTTCTG CTGTAATTTT 2222 .......... .......... .......... .......... .......... .......... 170 TTATTTTACA CATTGACTTG AATTTGTCTG AAAGGGTTTT TCAAGGATCC TTTTGTTGAT 2282 .......... .......... .......... .......... .......... .......... 170 GGATGTATTT TGATTTGTGG ATTGATTGAG GTTTTAAGGC TTTTTCTGTA AAAAGCTTCT 2342 .......... .......... .......... .......... .......... .......... 170 TCTTTTAATT CATGGTTGAT GCTTCTAGAA TCTGGATTTG CTTGATGAGT TCTAGGTTAT 2402 .......... .......... .......... .......... .......... .......... 170 AAGGTTTCCT CTTTTTATTT AATTTGCTGC TTGTTTTTTG GTATTTAAAA TCTCTGTGTC 2462 .......... .......... .......... .......... .......... .......... 170 CAGAATTTTA CAAAAATATT AATAAATCTG GATTTGTCTT TGTGTTCTGT GTTGCTGCAA 2522 .......... .......... .......... .......... .......... .......... 170 GTTAATGGTT TTTCCATTTC TGTGACAGTC TAGTCAATTG GAATGTAAAA TCTGTTTTTC 2582 .......... .......... .......... .......... .......... .......... 170 TATTTTTGTG TATGTATTTG GATCTATGTC AAGAGGTTCC AGTGATCTGT GTTAATAGAA 2642 .......... .......... .......... .......... .......... .......... 170 GTGATTCTTT TAGCCAAATT GTCTTCTTGT TATGTGTAGT GGTGGATCCA ATGTAATGGT 2702 .......... .......... .......... .......... .......... .......... 170 ACCAGGTTCA TCTGAACCTA ATAGTTTCGA CTCGGAGCAT AAATTTATGT GTAGGAATTC 2762 .......... .......... .......... .......... .......... .......... 170 ACTAAAATTG CAATAAATAG TAGACATGAA TGATGTTGAT GACGACATGC TTGAGATGGT 2822 .......... .......... .......... .......... .......... .......... 170 TGTATTAATA GCTTGCATTA GTTTCGATCT TTTCTATGGT ATCAATTCCC ATAGTTATAC 2882 .......... .......... .......... .......... .......... .......... 170 GTTGTTGTCG AAATGTTTAT TTAGTTATTC TTTGACATGA AATTTTTTTA CTTTATGAGT 2942 .......... .......... .......... .......... .......... .......... 170 AACTGATAAT ATACTTGCAA TTACAGGTGT GGACACTGTA AGAGTCTTGC TCCTGAGGTA 3002 |||| |||||||||| |||||||||| ||||||| .......... .......... ......GTGT GGACACTGTA AGAGTCTTGC TCCTGAG... 201 CACTTTCTTC TATACAGTGC TTAATGAAGG AAGGAATATC ATTTTTCTCT GTCATTATGT 3062 .......... .......... .......... .......... .......... .......... 201 TTTTTCTTGG CATTTTCAAT CTATGCAACT GATTTAATGT TAAATTATGT TTCTTTCCAG 3122 .......... .......... .......... .......... .......... .......... 201 TATGAAAAAG CTGCCTCAGA GCTGAGTAGT CATGACCCTC CAATTGTTCT AGCTAAGTAT 3182 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATGAAAAAG CTGCCTCAGA GCTGAGTAGT CATGACCCTC CAATTGTTCT AGCTAAGTAT 261 GATGCAAATG ATGAAGCCAA TAGAGAACTT TCAAAACAGT ACGAGATCCA GGGTTTCCCA 3242 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATGCAAATG ATGAAGCCAA TAGAGAACTT TCAAAACAGT ACGAGATCCA GGGTTTCCCA 321 ACTATTAAGA TATTGAGAGA TGGAGGAAAG AAAGTTCAAG ACTATAACGG TCCTCGTGAA 3302 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACTATTAAGA TATTGAGAGA TGGAGGAAAG AAAGTTCAAG ACTATAACGG TCCTCGTGAA 381 GCAGCTGGTA TTGTATCCTA CTTGAAGAAA CAAGTGGGTC CTGCATCTGC TGAAATCAAG 3362 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCAGCTGGTA TTGTATCCTA CTTGAAGAAA CAAGTGGGTC CTGCATCTGC TGAAATCAAG 441 TCGAAGGAAG ATGCCACAAA CCTTATTGAT GAGAAAAGTA TCTTTGTTGT AAGTGGTGAT 3422 |||||||||| |||||||||| |||||||||| |||||||||| |||||||| TCGAAGGAAG ATGCCACAAA CCTTATTGAT GAGAAAAGTA TCTTTGTT.. .......... 489 ACTTTTGATG TTTTACTTAT CATTACTGAA GTTTATTTTC AGCATGCCAT AGCTTCTTGC 3482 .......... .......... .......... .......... .......... .......... 489 TGTCTAAAAT CTTTCTGTTT CTTTAGGTTG GTATATTTCC AGACCCCTCC GGAGAGAAAT 3542 |||| |||||||||| |||||||||| |||||||||| .......... .......... ......GTTG GTATATTTCC AGACCCCTCC GGAGAGAAAT 523 TCGAGAACTA TTTAACGCTA GCTGAAAAAC TGCGAGGCGA GTTCGATTTT GCTCACACTG 3602 |||||||||| |||||||||| |||||||||| |||||||||| |||||||| | |||||||||| TCGAGAACTA TTTAACGCTA GCTGAAAAAC TGCGAGGCGA GTTCGATTNT GCTCACACTG 583 TTGATGCTAA ACACCTCCCT CGGGGTGGAC CAGTCAACAA GCCCACTCTT CGTCTTCTAA 3662 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGATGCTAA ACACCTCCCT CGGGGTGGAC CAGTCAACAA GCCCACTCTT CGTCTTCTAA 643 AGCCATTTGA TGAACTCTTT GTTGATTTTG AGGTATTACA GTTATCTGTG TATATTTTTA 3722 |||||||||| |||||||||| |||||||||| || AGCCATTTGA TGAACTCTTT GTTGATTTTG AG........ .......... .......... 675 TCTTTGATAC TCATTGTATT ATGGTTATGA GGCTCAACTC TGTCCTATGT TATCTTTTAA 3782 .......... .......... .......... .......... .......... .......... 675 TTGGCCATTG ATTGTACATA CTTGCAGGAC TTTGATGTCG ATGC 3826 ||| |||||||||| |||| .......... .......... .......GAC TTTGATGTCG ATGC 692 hqPGS_C06HBa0054K13.1-11+_SGN-E334958+ (1623 1792,2969 2999,3123 3410,3509 3694,3810 3826) ******************************************************************************** EST sequence 88 +strand 871 n (File: SGN-E548943+) 1 CAAAAATGGC AAAGAGTGGC ATTTTGGTAA TTGTTTCAGC TCTTGTTGTT CTTGCAGTTT 61 GTGGTGTTTT TGCTGAGGAG AACGAATATG TGTTGACTTT GGACCATTCT AACCTCACTG 121 AGACTGTTGC TAAGCACAAC TTCATTGTTG TTGAATTCTA TGCACCTTGG TGTGGACACT 181 GTAAGAGTCT TGCTCCTGAG TATGAAAAAG CTGCCTCAGA GCTGAGTAGT CATGACCCTC 241 CAATTGTTCT AGCTAAGTAT GATGCAAATG ATGAAGCCAA TAGAGAACTT TCAAAACAGT 301 ACGAGATCCA GGGTTTCCCA ACTATTAAGA TATTGAGAGA TGGAGGAAAG AAAGTTCAAG 361 ACTATAACGG TCCTCGTGAA GCAGCTGGTA TTGTATCCTA CTTGAAGAAA CAAGTGGGTC 421 CTGCATCTGC TGAAATCAAG TCGAAGGAAG ATGCCACAAA CCTTATTGAT GAGAAAAGTA 481 TCTTTGTTGT TGGTATATTT CCAGACCCCT CCGGAGAGAA ATTCGAGAAC TATTTAACGC 541 TAGCTGAAAA ACTGCGAGGC GAGTTCGATT TTGCTCACAC TGTTGATGCT AAACACCTCC 601 CTCGGGGTGG ACCAGTCAAC AAGCCCACTC TTCGTCTTCT AAAGCCATTT GATGAACTCT 661 TTGTTGATTT TGAGGACTTT GATGTCGATG CAATGGAGAA GTTCATCTCA GAATCTAGTA 721 TTCCTGGTTG TACTATTTTT GACAATGACC CAAAGCACCA TCCTTTATGT AAACAGTTCT 781 TTCGAGGCAC CAAACGCCAG GCATTGCTAT TTGTGAACTT TAGCTCTGAA GTTGATGCTT 841 TTAAGTCAAG NTACACGATG TTGCTGTGAT T Predicted gene structure (within gDNA segment 1024 to 4811): Exon 1 1624 1792 ( 169 n); cDNA 1 169 ( 169 n); score: 1.000 Intron 1 1793 2968 (1176 n); Pd: 1.000 (s: 1.00), Pa: 0.997 (s: 0) Exon 2 2969 2999 ( 31 n); cDNA 170 200 ( 31 n); score: 1.000 Intron 2 3000 3122 ( 123 n); Pd: 0.917 (s: 0), Pa: 0.997 (s: 1.00) Exon 3 3123 3410 ( 288 n); cDNA 201 488 ( 288 n); score: 1.000 Intron 3 3411 3508 ( 98 n); Pd: 0.907 (s: 1.00), Pa: 0.997 (s: 1.00) Exon 4 3509 3694 ( 186 n); cDNA 489 674 ( 186 n); score: 1.000 Intron 4 3695 3809 ( 115 n); Pd: 0.988 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 5 3810 3935 ( 126 n); cDNA 675 800 ( 126 n); score: 0.869 Intron 5 3936 4129 ( 194 n); Pd: 0.981 (s: 0.72), Pa: 0.965 (s: 0.94) Exon 6 4130 4201 ( 72 n); cDNA 801 871 ( 71 n); score: 0.931 MATCH C06HBa0054K13.1-11+ SGN-E548943+ 0.974 872 1.001 C PGS_C06HBa0054K13.1-11+_SGN-E548943+ (1624 1792,2969 2999,3123 3410,3509 3694,3810 3935,4130 4201) Alignment (genomic DNA sequence = upper lines): CAAAAATGGC AAAGAGTGGC ATTTTGGTAA TTGTTTCAGC TCTTGTTGTT CTTGCAGTTT 1683 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAAAATGGC AAAGAGTGGC ATTTTGGTAA TTGTTTCAGC TCTTGTTGTT CTTGCAGTTT 60 GTGGTGTTTT TGCTGAGGAG AACGAATATG TGTTGACTTT GGACCATTCT AACCTCACTG 1743 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGGTGTTTT TGCTGAGGAG AACGAATATG TGTTGACTTT GGACCATTCT AACCTCACTG 120 AGACTGTTGC TAAGCACAAC TTCATTGTTG TTGAATTCTA TGCACCTTGG TAAGTCATCT 1803 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| AGACTGTTGC TAAGCACAAC TTCATTGTTG TTGAATTCTA TGCACCTTG. .......... 169 GCTGTTTTTT TTTCTATTTA TTTTCTTGAA AAAAGTTCAT TTTTTTTGCT TGTTGAATCT 1863 .......... .......... .......... .......... .......... .......... 169 GTATGTGCAG AATGTAATGA ATGATTGGAT GTAAGGGGTT TTGTTTTTGA TCTGTTTTTT 1923 .......... .......... .......... .......... .......... .......... 169 TTTTGTTATT TTAGTGAATT TTTGCTGTAA TTTTTTTGTT TTCATAAGCT GTGTGAGGAA 1983 .......... .......... .......... .......... .......... .......... 169 TGCATCAAGA TCAGTTCTTT ATGTTAATTT GTCTTAAAGG GTTCATCAAG GACCCCTTTG 2043 .......... .......... .......... .......... .......... .......... 169 GCTCTACTTT GCTGTTCCTG TTTTTTTTTT TTTTTTGGAG TTTTATCTTT TTGCTGGTTT 2103 .......... .......... .......... .......... .......... .......... 169 CTCTGGCTTT AGAAACTGCA TGTGCAGAAG ATAATCAATG ACTGGTTCTT TTTCTTTTGG 2163 .......... .......... .......... .......... .......... .......... 169 GGAATTTAAG GTTTTGTTAT GTAAATGGTT TTTTTTTCTG ATTTTTCTGC TGTAATTTTT 2223 .......... .......... .......... .......... .......... .......... 169 TATTTTACAC ATTGACTTGA ATTTGTCTGA AAGGGTTTTT CAAGGATCCT TTTGTTGATG 2283 .......... .......... .......... .......... .......... .......... 169 GATGTATTTT GATTTGTGGA TTGATTGAGG TTTTAAGGCT TTTTCTGTAA AAAGCTTCTT 2343 .......... .......... .......... .......... .......... .......... 169 CTTTTAATTC ATGGTTGATG CTTCTAGAAT CTGGATTTGC TTGATGAGTT CTAGGTTATA 2403 .......... .......... .......... .......... .......... .......... 169 AGGTTTCCTC TTTTTATTTA ATTTGCTGCT TGTTTTTTGG TATTTAAAAT CTCTGTGTCC 2463 .......... .......... .......... .......... .......... .......... 169 AGAATTTTAC AAAAATATTA ATAAATCTGG ATTTGTCTTT GTGTTCTGTG TTGCTGCAAG 2523 .......... .......... .......... .......... .......... .......... 169 TTAATGGTTT TTCCATTTCT GTGACAGTCT AGTCAATTGG AATGTAAAAT CTGTTTTTCT 2583 .......... .......... .......... .......... .......... .......... 169 ATTTTTGTGT ATGTATTTGG ATCTATGTCA AGAGGTTCCA GTGATCTGTG TTAATAGAAG 2643 .......... .......... .......... .......... .......... .......... 169 TGATTCTTTT AGCCAAATTG TCTTCTTGTT ATGTGTAGTG GTGGATCCAA TGTAATGGTA 2703 .......... .......... .......... .......... .......... .......... 169 CCAGGTTCAT CTGAACCTAA TAGTTTCGAC TCGGAGCATA AATTTATGTG TAGGAATTCA 2763 .......... .......... .......... .......... .......... .......... 169 CTAAAATTGC AATAAATAGT AGACATGAAT GATGTTGATG ACGACATGCT TGAGATGGTT 2823 .......... .......... .......... .......... .......... .......... 169 GTATTAATAG CTTGCATTAG TTTCGATCTT TTCTATGGTA TCAATTCCCA TAGTTATACG 2883 .......... .......... .......... .......... .......... .......... 169 TTGTTGTCGA AATGTTTATT TAGTTATTCT TTGACATGAA ATTTTTTTAC TTTATGAGTA 2943 .......... .......... .......... .......... .......... .......... 169 ACTGATAATA TACTTGCAAT TACAGGTGTG GACACTGTAA GAGTCTTGCT CCTGAGGTAC 3003 ||||| |||||||||| |||||||||| |||||| .......... .......... .....GTGTG GACACTGTAA GAGTCTTGCT CCTGAG.... 200 ACTTTCTTCT ATACAGTGCT TAATGAAGGA AGGAATATCA TTTTTCTCTG TCATTATGTT 3063 .......... .......... .......... .......... .......... .......... 200 TTTTCTTGGC ATTTTCAATC TATGCAACTG ATTTAATGTT AAATTATGTT TCTTTCCAGT 3123 | .......... .......... .......... .......... .......... .........T 201 ATGAAAAAGC TGCCTCAGAG CTGAGTAGTC ATGACCCTCC AATTGTTCTA GCTAAGTATG 3183 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGAAAAAGC TGCCTCAGAG CTGAGTAGTC ATGACCCTCC AATTGTTCTA GCTAAGTATG 261 ATGCAAATGA TGAAGCCAAT AGAGAACTTT CAAAACAGTA CGAGATCCAG GGTTTCCCAA 3243 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGCAAATGA TGAAGCCAAT AGAGAACTTT CAAAACAGTA CGAGATCCAG GGTTTCCCAA 321 CTATTAAGAT ATTGAGAGAT GGAGGAAAGA AAGTTCAAGA CTATAACGGT CCTCGTGAAG 3303 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTATTAAGAT ATTGAGAGAT GGAGGAAAGA AAGTTCAAGA CTATAACGGT CCTCGTGAAG 381 CAGCTGGTAT TGTATCCTAC TTGAAGAAAC AAGTGGGTCC TGCATCTGCT GAAATCAAGT 3363 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAGCTGGTAT TGTATCCTAC TTGAAGAAAC AAGTGGGTCC TGCATCTGCT GAAATCAAGT 441 CGAAGGAAGA TGCCACAAAC CTTATTGATG AGAAAAGTAT CTTTGTTGTA AGTGGTGATA 3423 |||||||||| |||||||||| |||||||||| |||||||||| ||||||| CGAAGGAAGA TGCCACAAAC CTTATTGATG AGAAAAGTAT CTTTGTT... .......... 488 CTTTTGATGT TTTACTTATC ATTACTGAAG TTTATTTTCA GCATGCCATA GCTTCTTGCT 3483 .......... .......... .......... .......... .......... .......... 488 GTCTAAAATC TTTCTGTTTC TTTAGGTTGG TATATTTCCA GACCCCTCCG GAGAGAAATT 3543 ||||| |||||||||| |||||||||| |||||||||| .......... .......... .....GTTGG TATATTTCCA GACCCCTCCG GAGAGAAATT 523 CGAGAACTAT TTAACGCTAG CTGAAAAACT GCGAGGCGAG TTCGATTTTG CTCACACTGT 3603 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGAGAACTAT TTAACGCTAG CTGAAAAACT GCGAGGCGAG TTCGATTTTG CTCACACTGT 583 TGATGCTAAA CACCTCCCTC GGGGTGGACC AGTCAACAAG CCCACTCTTC GTCTTCTAAA 3663 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGATGCTAAA CACCTCCCTC GGGGTGGACC AGTCAACAAG CCCACTCTTC GTCTTCTAAA 643 GCCATTTGAT GAACTCTTTG TTGATTTTGA GGTATTACAG TTATCTGTGT ATATTTTTAT 3723 |||||||||| |||||||||| |||||||||| | GCCATTTGAT GAACTCTTTG TTGATTTTGA G......... .......... .......... 674 CTTTGATACT CATTGTATTA TGGTTATGAG GCTCAACTCT GTCCTATGTT ATCTTTTAAT 3783 .......... .......... .......... .......... .......... .......... 674 TGGCCATTGA TTGTACATAC TTGCAGGACT TTGATGTCGA TGCAATGGAG AAGTTCATCT 3843 |||| |||||||||| |||||||||| |||||||||| .......... .......... ......GACT TTGATGTCGA TGCAATGGAG AAGTTCATCT 708 CAGAATCTAG TATTCCTGTT GTTACTATTT TTGACAATGA CCCAAACAAC CATCC-TTAT 3902 |||||||||| |||||||| | |||||||| |||||||||| |||||| || ||||| |||| CAGAATCTAG TATTCCTGGT TGTACTATTT TTGACAATGA CCCAAAGCAC CATCCTTTAT 768 GTTAACAAGT TCTTCGAAGG CACCAACGCC AAGGTACTTG ATTCTGCGAG CTGTAATGCT 3962 || ||| ||| |||| ||| |||||| | || GTAAAC-AGT TCTTTCGAGG CACCAAACGC CAG....... .......... .......... 800 TCAATTTGAC CTTATATTTC AACGTCAAGC AATTCTAGGA TCTTCTCATG AATTTTACAG 4022 .......... .......... .......... .......... .......... .......... 800 TTATATGCTT GTACTTGTAT TATTTTCTTT TCATTCACTA ATATTTGACA ATTAACTTCA 4082 .......... .......... .......... .......... .......... .......... 800 AAGTTCTAAG AGATTGATTT GTTTTTTTGA CATTTGCAAA TCTACAGGCA TTGCTATTTG 4142 ||| |||||||||| .......... .......... .......... .......... .......GCA TTGCTATTTG 813 TGAACTTTAG CTCTGAATTT GATGCTTTTA AGTCCAAGTA CAACGATGTT GCTGTGATT 4201 |||||||||| ||||||| || |||||||||| |||| | || | |||||||| ||||||||| TGAACTTTAG CTCTGAAGTT GATGCTTTTA AGTCAAGNTA C-ACGATGTT GCTGTGATT 871 hqPGS_C06HBa0054K13.1-11+_SGN-E548943+ (1624 1792,2969 2999,3123 3410,3509 3694,3810 3935,4130 4201) ******************************************************************************** EST sequence 89 +strand 670 n (File: SGN-E543839+) 1 CAAAAATGGC AAAGAGTGGC ATTTTGGTAA TTGTTTCAGC TCTTGTTGTT CTTGCAGTTT 61 GTGGTGTTTT TGCTGAGGAG AACGAATATG TGTTGACTTT GGACCATTCT AACCTCACTG 121 AGACTGTTGC TAAGCACAAC TTCATTGTTG TTGAATTCTA TGCACCTTGG TGTGGACACT 181 GTAAGAGTCT TGCTCCTGAG TATGAAAAAG CTGCCTCAGA GCTGAGTAGT CATGACCCTC 241 CAATTGTTCT AGCTAAGTAT GATGCAAATG ATGAAGCCAA TAGAGAACTT TCAAAACAGT 301 ACGAGATCCA GGGTTTCCCA ACTATTAAGA TATTGAGAGA TGGAGGAAAG AAAGTTCAAG 361 ACTATAACGG TCCTCGTGAA GCAGCTGGTA TTGTATCCTA CTTGAAGAAA CAAGTGGGTC 421 CTGCATCTGC TGAAATCAAG TCGAAGGAAG ATGCCACAAA CCTTATTGAT GAGAAAAGTA 481 TCTTTGTTGT TGGTATATTT CCAGACCCCT CCGGAGAGAA ATTCGAGAAC TATTTAACGC 541 TAGCTGAAAA ACTGCGAGGC GAGTTCGATT TTGCTCACAC TGTTGATGCT AAACACCTCC 601 CTCGGGGTGG ACCAGTCAAC AAGCCCACTC TTCGTCTTCT AAAGCCATTT GATGAACTCT 661 TTGTTGATTT Predicted gene structure (within gDNA segment 1024 to 4300): Exon 1 1624 1792 ( 169 n); cDNA 1 169 ( 169 n); score: 1.000 Intron 1 1793 2968 (1176 n); Pd: 1.000 (s: 1.00), Pa: 0.997 (s: 0) Exon 2 2969 2999 ( 31 n); cDNA 170 200 ( 31 n); score: 1.000 Intron 2 3000 3122 ( 123 n); Pd: 0.917 (s: 0), Pa: 0.997 (s: 1.00) Exon 3 3123 3410 ( 288 n); cDNA 201 488 ( 288 n); score: 1.000 Intron 3 3411 3508 ( 98 n); Pd: 0.907 (s: 1.00), Pa: 0.997 (s: 1.00) Exon 4 3509 3690 ( 182 n); cDNA 489 670 ( 182 n); score: 1.000 MATCH C06HBa0054K13.1-11+ SGN-E543839+ 1.000 670 1.000 C PGS_C06HBa0054K13.1-11+_SGN-E543839+ (1624 1792,2969 2999,3123 3410,3509 3690) Alignment (genomic DNA sequence = upper lines): CAAAAATGGC AAAGAGTGGC ATTTTGGTAA TTGTTTCAGC TCTTGTTGTT CTTGCAGTTT 1683 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAAAATGGC AAAGAGTGGC ATTTTGGTAA TTGTTTCAGC TCTTGTTGTT CTTGCAGTTT 60 GTGGTGTTTT TGCTGAGGAG AACGAATATG TGTTGACTTT GGACCATTCT AACCTCACTG 1743 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGGTGTTTT TGCTGAGGAG AACGAATATG TGTTGACTTT GGACCATTCT AACCTCACTG 120 AGACTGTTGC TAAGCACAAC TTCATTGTTG TTGAATTCTA TGCACCTTGG TAAGTCATCT 1803 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| AGACTGTTGC TAAGCACAAC TTCATTGTTG TTGAATTCTA TGCACCTTG. .......... 169 GCTGTTTTTT TTTCTATTTA TTTTCTTGAA AAAAGTTCAT TTTTTTTGCT TGTTGAATCT 1863 .......... .......... .......... .......... .......... .......... 169 GTATGTGCAG AATGTAATGA ATGATTGGAT GTAAGGGGTT TTGTTTTTGA TCTGTTTTTT 1923 .......... .......... .......... .......... .......... .......... 169 TTTTGTTATT TTAGTGAATT TTTGCTGTAA TTTTTTTGTT TTCATAAGCT GTGTGAGGAA 1983 .......... .......... .......... .......... .......... .......... 169 TGCATCAAGA TCAGTTCTTT ATGTTAATTT GTCTTAAAGG GTTCATCAAG GACCCCTTTG 2043 .......... .......... .......... .......... .......... .......... 169 GCTCTACTTT GCTGTTCCTG TTTTTTTTTT TTTTTTGGAG TTTTATCTTT TTGCTGGTTT 2103 .......... .......... .......... .......... .......... .......... 169 CTCTGGCTTT AGAAACTGCA TGTGCAGAAG ATAATCAATG ACTGGTTCTT TTTCTTTTGG 2163 .......... .......... .......... .......... .......... .......... 169 GGAATTTAAG GTTTTGTTAT GTAAATGGTT TTTTTTTCTG ATTTTTCTGC TGTAATTTTT 2223 .......... .......... .......... .......... .......... .......... 169 TATTTTACAC ATTGACTTGA ATTTGTCTGA AAGGGTTTTT CAAGGATCCT TTTGTTGATG 2283 .......... .......... .......... .......... .......... .......... 169 GATGTATTTT GATTTGTGGA TTGATTGAGG TTTTAAGGCT TTTTCTGTAA AAAGCTTCTT 2343 .......... .......... .......... .......... .......... .......... 169 CTTTTAATTC ATGGTTGATG CTTCTAGAAT CTGGATTTGC TTGATGAGTT CTAGGTTATA 2403 .......... .......... .......... .......... .......... .......... 169 AGGTTTCCTC TTTTTATTTA ATTTGCTGCT TGTTTTTTGG TATTTAAAAT CTCTGTGTCC 2463 .......... .......... .......... .......... .......... .......... 169 AGAATTTTAC AAAAATATTA ATAAATCTGG ATTTGTCTTT GTGTTCTGTG TTGCTGCAAG 2523 .......... .......... .......... .......... .......... .......... 169 TTAATGGTTT TTCCATTTCT GTGACAGTCT AGTCAATTGG AATGTAAAAT CTGTTTTTCT 2583 .......... .......... .......... .......... .......... .......... 169 ATTTTTGTGT ATGTATTTGG ATCTATGTCA AGAGGTTCCA GTGATCTGTG TTAATAGAAG 2643 .......... .......... .......... .......... .......... .......... 169 TGATTCTTTT AGCCAAATTG TCTTCTTGTT ATGTGTAGTG GTGGATCCAA TGTAATGGTA 2703 .......... .......... .......... .......... .......... .......... 169 CCAGGTTCAT CTGAACCTAA TAGTTTCGAC TCGGAGCATA AATTTATGTG TAGGAATTCA 2763 .......... .......... .......... .......... .......... .......... 169 CTAAAATTGC AATAAATAGT AGACATGAAT GATGTTGATG ACGACATGCT TGAGATGGTT 2823 .......... .......... .......... .......... .......... .......... 169 GTATTAATAG CTTGCATTAG TTTCGATCTT TTCTATGGTA TCAATTCCCA TAGTTATACG 2883 .......... .......... .......... .......... .......... .......... 169 TTGTTGTCGA AATGTTTATT TAGTTATTCT TTGACATGAA ATTTTTTTAC TTTATGAGTA 2943 .......... .......... .......... .......... .......... .......... 169 ACTGATAATA TACTTGCAAT TACAGGTGTG GACACTGTAA GAGTCTTGCT CCTGAGGTAC 3003 ||||| |||||||||| |||||||||| |||||| .......... .......... .....GTGTG GACACTGTAA GAGTCTTGCT CCTGAG.... 200 ACTTTCTTCT ATACAGTGCT TAATGAAGGA AGGAATATCA TTTTTCTCTG TCATTATGTT 3063 .......... .......... .......... .......... .......... .......... 200 TTTTCTTGGC ATTTTCAATC TATGCAACTG ATTTAATGTT AAATTATGTT TCTTTCCAGT 3123 | .......... .......... .......... .......... .......... .........T 201 ATGAAAAAGC TGCCTCAGAG CTGAGTAGTC ATGACCCTCC AATTGTTCTA GCTAAGTATG 3183 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGAAAAAGC TGCCTCAGAG CTGAGTAGTC ATGACCCTCC AATTGTTCTA GCTAAGTATG 261 ATGCAAATGA TGAAGCCAAT AGAGAACTTT CAAAACAGTA CGAGATCCAG GGTTTCCCAA 3243 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGCAAATGA TGAAGCCAAT AGAGAACTTT CAAAACAGTA CGAGATCCAG GGTTTCCCAA 321 CTATTAAGAT ATTGAGAGAT GGAGGAAAGA AAGTTCAAGA CTATAACGGT CCTCGTGAAG 3303 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTATTAAGAT ATTGAGAGAT GGAGGAAAGA AAGTTCAAGA CTATAACGGT CCTCGTGAAG 381 CAGCTGGTAT TGTATCCTAC TTGAAGAAAC AAGTGGGTCC TGCATCTGCT GAAATCAAGT 3363 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAGCTGGTAT TGTATCCTAC TTGAAGAAAC AAGTGGGTCC TGCATCTGCT GAAATCAAGT 441 CGAAGGAAGA TGCCACAAAC CTTATTGATG AGAAAAGTAT CTTTGTTGTA AGTGGTGATA 3423 |||||||||| |||||||||| |||||||||| |||||||||| ||||||| CGAAGGAAGA TGCCACAAAC CTTATTGATG AGAAAAGTAT CTTTGTT... .......... 488 CTTTTGATGT TTTACTTATC ATTACTGAAG TTTATTTTCA GCATGCCATA GCTTCTTGCT 3483 .......... .......... .......... .......... .......... .......... 488 GTCTAAAATC TTTCTGTTTC TTTAGGTTGG TATATTTCCA GACCCCTCCG GAGAGAAATT 3543 ||||| |||||||||| |||||||||| |||||||||| .......... .......... .....GTTGG TATATTTCCA GACCCCTCCG GAGAGAAATT 523 CGAGAACTAT TTAACGCTAG CTGAAAAACT GCGAGGCGAG TTCGATTTTG CTCACACTGT 3603 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGAGAACTAT TTAACGCTAG CTGAAAAACT GCGAGGCGAG TTCGATTTTG CTCACACTGT 583 TGATGCTAAA CACCTCCCTC GGGGTGGACC AGTCAACAAG CCCACTCTTC GTCTTCTAAA 3663 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGATGCTAAA CACCTCCCTC GGGGTGGACC AGTCAACAAG CCCACTCTTC GTCTTCTAAA 643 GCCATTTGAT GAACTCTTTG TTGATTT 3690 |||||||||| |||||||||| ||||||| GCCATTTGAT GAACTCTTTG TTGATTT 670 hqPGS_C06HBa0054K13.1-11+_SGN-E543839+ (1624 1792,2969 2999,3123 3410,3509 3690) ******************************************************************************** EST sequence 5 +strand 554 n (File: SGN-E313965+) 1 GCAAAAATGG CAAAGTATTG GCATTTTTGT AATTGTTTCA GCTCTTGGGG TTCTTGCGGT 61 GTGTGGTGTG GTTGCTGAGG ACAACGAATA TGTGTTCACT TTGGACCATT CTAACCTCAC 121 TGAGACTGTT GCTAAGCACA ACTTCATTGT TGTTGAATTC TATGCACCTT GGTGTGGACA 181 CTGTAAGAGT CTTGCTCCTG AGTATGAAAA AGCTGCCTCA GAGCTGAGTA GTCATGACCC 241 TCCAATTGTT CTAGCTAAGT ATGATGCAAA TGATGAAGCC AATATAGAAC TTTCAAAACA 301 GTACGAGATC CAGGGTTTCC CAACTATTAA GATATTGAGA GATGGAGGAA AGAAAGTTCA 361 AGACTATAAC GGTCCTCGTG AAGCAGCTGG TATTGTATCC TACTTGAAGA AACAAGTGGG 421 TCCTGCATCT GCTGAAATCA AGTCGAAAGA AGATGCCACA AACCTTATTG ATGAGAAAAG 481 TATCTTTGTT GTTGGTATAT TTCCAAACCC CTCCGGAGAG AAATTCGAGA ACTATTTAAC 541 GCTAGCTGAA AAAC Predicted gene structure (within gDNA segment 149 to 4182): Exon 1 1624 1792 ( 169 n); cDNA 2 171 ( 170 n); score: 0.926 Intron 1 1793 2968 (1176 n); Pd: 1.000 (s: 1.00), Pa: 0.997 (s: 0) Exon 2 2969 2999 ( 31 n); cDNA 172 202 ( 31 n); score: 1.000 Intron 2 3000 3122 ( 123 n); Pd: 0.917 (s: 0), Pa: 0.997 (s: 1.00) Exon 3 3123 3410 ( 288 n); cDNA 203 490 ( 288 n); score: 0.993 Intron 3 3411 3508 ( 98 n); Pd: 0.907 (s: 0.98), Pa: 0.997 (s: 0.98) Exon 4 3509 3572 ( 64 n); cDNA 491 554 ( 64 n); score: 0.984 MATCH C06HBa0054K13.1-11+ SGN-E313965+ 0.970 552 0.996 C PGS_C06HBa0054K13.1-11+_SGN-E313965+ (1624 1792,2969 2999,3123 3410,3509 3572) Alignment (genomic DNA sequence = upper lines): CAAAAATGGC AAAG-AGTGG CATTTTGGTA ATTGTTTCAG CTCTTGTTGT TCTTGCAGTT 1682 |||||||||| |||| | ||| |||||| ||| |||||||||| |||||| || |||||| || CAAAAATGGC AAAGTATTGG CATTTTTGTA ATTGTTTCAG CTCTTGGGGT TCTTGCGGTG 61 TGTGGTGTTT TTGCTGAGGA GAACGAATAT GTGTTGACTT TGGACCATTC TAACCTCACT 1742 |||||||| |||||||||| ||||||||| ||||| |||| |||||||||| |||||||||| TGTGGTGTGG TTGCTGAGGA CAACGAATAT GTGTTCACTT TGGACCATTC TAACCTCACT 121 GAGACTGTTG CTAAGCACAA CTTCATTGTT GTTGAATTCT ATGCACCTTG GTAAGTCATC 1802 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGACTGTTG CTAAGCACAA CTTCATTGTT GTTGAATTCT ATGCACCTTG .......... 171 TGCTGTTTTT TTTTCTATTT ATTTTCTTGA AAAAAGTTCA TTTTTTTTGC TTGTTGAATC 1862 .......... .......... .......... .......... .......... .......... 171 TGTATGTGCA GAATGTAATG AATGATTGGA TGTAAGGGGT TTTGTTTTTG ATCTGTTTTT 1922 .......... .......... .......... .......... .......... .......... 171 TTTTTGTTAT TTTAGTGAAT TTTTGCTGTA ATTTTTTTGT TTTCATAAGC TGTGTGAGGA 1982 .......... .......... .......... .......... .......... .......... 171 ATGCATCAAG ATCAGTTCTT TATGTTAATT TGTCTTAAAG GGTTCATCAA GGACCCCTTT 2042 .......... .......... .......... .......... .......... .......... 171 GGCTCTACTT TGCTGTTCCT GTTTTTTTTT TTTTTTTGGA GTTTTATCTT TTTGCTGGTT 2102 .......... .......... .......... .......... .......... .......... 171 TCTCTGGCTT TAGAAACTGC ATGTGCAGAA GATAATCAAT GACTGGTTCT TTTTCTTTTG 2162 .......... .......... .......... .......... .......... .......... 171 GGGAATTTAA GGTTTTGTTA TGTAAATGGT TTTTTTTTCT GATTTTTCTG CTGTAATTTT 2222 .......... .......... .......... .......... .......... .......... 171 TTATTTTACA CATTGACTTG AATTTGTCTG AAAGGGTTTT TCAAGGATCC TTTTGTTGAT 2282 .......... .......... .......... .......... .......... .......... 171 GGATGTATTT TGATTTGTGG ATTGATTGAG GTTTTAAGGC TTTTTCTGTA AAAAGCTTCT 2342 .......... .......... .......... .......... .......... .......... 171 TCTTTTAATT CATGGTTGAT GCTTCTAGAA TCTGGATTTG CTTGATGAGT TCTAGGTTAT 2402 .......... .......... .......... .......... .......... .......... 171 AAGGTTTCCT CTTTTTATTT AATTTGCTGC TTGTTTTTTG GTATTTAAAA TCTCTGTGTC 2462 .......... .......... .......... .......... .......... .......... 171 CAGAATTTTA CAAAAATATT AATAAATCTG GATTTGTCTT TGTGTTCTGT GTTGCTGCAA 2522 .......... .......... .......... .......... .......... .......... 171 GTTAATGGTT TTTCCATTTC TGTGACAGTC TAGTCAATTG GAATGTAAAA TCTGTTTTTC 2582 .......... .......... .......... .......... .......... .......... 171 TATTTTTGTG TATGTATTTG GATCTATGTC AAGAGGTTCC AGTGATCTGT GTTAATAGAA 2642 .......... .......... .......... .......... .......... .......... 171 GTGATTCTTT TAGCCAAATT GTCTTCTTGT TATGTGTAGT GGTGGATCCA ATGTAATGGT 2702 .......... .......... .......... .......... .......... .......... 171 ACCAGGTTCA TCTGAACCTA ATAGTTTCGA CTCGGAGCAT AAATTTATGT GTAGGAATTC 2762 .......... .......... .......... .......... .......... .......... 171 ACTAAAATTG CAATAAATAG TAGACATGAA TGATGTTGAT GACGACATGC TTGAGATGGT 2822 .......... .......... .......... .......... .......... .......... 171 TGTATTAATA GCTTGCATTA GTTTCGATCT TTTCTATGGT ATCAATTCCC ATAGTTATAC 2882 .......... .......... .......... .......... .......... .......... 171 GTTGTTGTCG AAATGTTTAT TTAGTTATTC TTTGACATGA AATTTTTTTA CTTTATGAGT 2942 .......... .......... .......... .......... .......... .......... 171 AACTGATAAT ATACTTGCAA TTACAGGTGT GGACACTGTA AGAGTCTTGC TCCTGAGGTA 3002 |||| |||||||||| |||||||||| ||||||| .......... .......... ......GTGT GGACACTGTA AGAGTCTTGC TCCTGAG... 202 CACTTTCTTC TATACAGTGC TTAATGAAGG AAGGAATATC ATTTTTCTCT GTCATTATGT 3062 .......... .......... .......... .......... .......... .......... 202 TTTTTCTTGG CATTTTCAAT CTATGCAACT GATTTAATGT TAAATTATGT TTCTTTCCAG 3122 .......... .......... .......... .......... .......... .......... 202 TATGAAAAAG CTGCCTCAGA GCTGAGTAGT CATGACCCTC CAATTGTTCT AGCTAAGTAT 3182 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATGAAAAAG CTGCCTCAGA GCTGAGTAGT CATGACCCTC CAATTGTTCT AGCTAAGTAT 262 GATGCAAATG ATGAAGCCAA TAGAGAACTT TCAAAACAGT ACGAGATCCA GGGTTTCCCA 3242 |||||||||| |||||||||| || ||||||| |||||||||| |||||||||| |||||||||| GATGCAAATG ATGAAGCCAA TATAGAACTT TCAAAACAGT ACGAGATCCA GGGTTTCCCA 322 ACTATTAAGA TATTGAGAGA TGGAGGAAAG AAAGTTCAAG ACTATAACGG TCCTCGTGAA 3302 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACTATTAAGA TATTGAGAGA TGGAGGAAAG AAAGTTCAAG ACTATAACGG TCCTCGTGAA 382 GCAGCTGGTA TTGTATCCTA CTTGAAGAAA CAAGTGGGTC CTGCATCTGC TGAAATCAAG 3362 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCAGCTGGTA TTGTATCCTA CTTGAAGAAA CAAGTGGGTC CTGCATCTGC TGAAATCAAG 442 TCGAAGGAAG ATGCCACAAA CCTTATTGAT GAGAAAAGTA TCTTTGTTGT AAGTGGTGAT 3422 ||||| |||| |||||||||| |||||||||| |||||||||| |||||||| TCGAAAGAAG ATGCCACAAA CCTTATTGAT GAGAAAAGTA TCTTTGTT.. .......... 490 ACTTTTGATG TTTTACTTAT CATTACTGAA GTTTATTTTC AGCATGCCAT AGCTTCTTGC 3482 .......... .......... .......... .......... .......... .......... 490 TGTCTAAAAT CTTTCTGTTT CTTTAGGTTG GTATATTTCC AGACCCCTCC GGAGAGAAAT 3542 |||| |||||||||| | |||||||| |||||||||| .......... .......... ......GTTG GTATATTTCC AAACCCCTCC GGAGAGAAAT 524 TCGAGAACTA TTTAACGCTA GCTGAAAAAC 3572 |||||||||| |||||||||| |||||||||| TCGAGAACTA TTTAACGCTA GCTGAAAAAC 554 hqPGS_C06HBa0054K13.1-11+_SGN-E313965+ (1624 1792,2969 2999,3123 3410,3509 3572) ******************************************************************************** EST sequence 40 +strand 832 n (File: SGN-E316989+) 1 AAAAATGGCA AAGAGTGGCA TTTTGGTAAT TGTTTCAGCT CTTGTTGTTC TTGCAGTTTG 61 TGGTGTTTTT GCTGAGGAGA ACGAATATGT GTTGACTTTG GACCATTCTA ACCTCACTGA 121 GACTGTTGCT AAGCACAACT TCATTGTTGT TGAATTCTAT GCACCTTGGT GTGGACACTG 181 TAAGAGTCTT GCTCCTGAGT ATGAAAAAGC TGCCTCAGAG CTGAGTAGTC ATGACCCTCC 241 AATTGTTCTA GCTAAGTATG ATGCAAATGA TGAAGCCAAT AGAGAACTTT CAAAACAGTA 301 CGAGATCCAG GGTTTCCCAA CTATTAAGAT ATTGAGAGAT GGAGGAAAGA AAGTTCAAGA 361 CTATAACGGT CCTCGTGAAG CAGCTGGTAT TGTATCCTAC TTGAAGAAAC AAGTGGGTCC 421 TGCATCTGCT GAAATCAAGT CGAAGGAAGA TGCCACAAAC CTTATTGATG AGAAAAGTAT 481 CTTTGTTGTT GGTATATTTC CAGACCCCTC CGGAGAGAAA TTCGAGAACT ATTTAACGCT 541 AGCTGAAAAA CTGCGAGGCG AGTTCGATTT TGCTCACACT GTTGATGCTA AACACCTCCC 601 TCGGGGTGGA CCAGTCAACA AGCCCACTCT TCGTCTTCTA AAGCCATTTG ATGAACTCTT 661 TGTTGATTTT GAGGACTTTG ATGTCGATGC AATGGAGAAT TCATCTCAGA ATCTAGTATT 721 CCTGTTGTTA CTATTTTTGA CAATGACCCA AACAACCATC CTTATGNTAA CAAGTTCTTC 781 GAAGGCACCA ACGCCAAGGC ATTGCTATTT TGTGAACTTT AGCTCTGAAT TT Predicted gene structure (within gDNA segment 1025 to 4876): Exon 1 1625 1792 ( 168 n); cDNA 1 168 ( 168 n); score: 1.000 Intron 1 1793 2968 (1176 n); Pd: 1.000 (s: 1.00), Pa: 0.997 (s: 0) Exon 2 2969 2999 ( 31 n); cDNA 169 199 ( 31 n); score: 1.000 Intron 2 3000 3122 ( 123 n); Pd: 0.917 (s: 0), Pa: 0.997 (s: 1.00) Exon 3 3123 3410 ( 288 n); cDNA 200 487 ( 288 n); score: 1.000 Intron 3 3411 3508 ( 98 n); Pd: 0.907 (s: 1.00), Pa: 0.997 (s: 1.00) Exon 4 3509 3694 ( 186 n); cDNA 488 673 ( 186 n); score: 1.000 Intron 4 3695 3809 ( 115 n); Pd: 0.988 (s: 1.00), Pa: 0.999 (s: 0.98) Exon 5 3810 3935 ( 126 n); cDNA 674 798 ( 125 n); score: 0.984 Intron 5 3936 4129 ( 194 n); Pd: 0.981 (s: 0.98), Pa: 0.965 (s: 0) Exon 6 4130 4162 ( 33 n); cDNA 799 832 ( 34 n); score: 0.924 MATCH C06HBa0054K13.1-11+ SGN-E316989+ 0.997 832 1.000 C PGS_C06HBa0054K13.1-11+_SGN-E316989+ (1625 1792,2969 2999,3123 3410,3509 3694,3810 3935,4130 4162) Alignment (genomic DNA sequence = upper lines): AAAAATGGCA AAGAGTGGCA TTTTGGTAAT TGTTTCAGCT CTTGTTGTTC TTGCAGTTTG 1684 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAAATGGCA AAGAGTGGCA TTTTGGTAAT TGTTTCAGCT CTTGTTGTTC TTGCAGTTTG 60 TGGTGTTTTT GCTGAGGAGA ACGAATATGT GTTGACTTTG GACCATTCTA ACCTCACTGA 1744 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGTGTTTTT GCTGAGGAGA ACGAATATGT GTTGACTTTG GACCATTCTA ACCTCACTGA 120 GACTGTTGCT AAGCACAACT TCATTGTTGT TGAATTCTAT GCACCTTGGT AAGTCATCTG 1804 |||||||||| |||||||||| |||||||||| |||||||||| |||||||| GACTGTTGCT AAGCACAACT TCATTGTTGT TGAATTCTAT GCACCTTG.. .......... 168 CTGTTTTTTT TTCTATTTAT TTTCTTGAAA AAAGTTCATT TTTTTTGCTT GTTGAATCTG 1864 .......... .......... .......... .......... .......... .......... 168 TATGTGCAGA ATGTAATGAA TGATTGGATG TAAGGGGTTT TGTTTTTGAT CTGTTTTTTT 1924 .......... .......... .......... .......... .......... .......... 168 TTTGTTATTT TAGTGAATTT TTGCTGTAAT TTTTTTGTTT TCATAAGCTG TGTGAGGAAT 1984 .......... .......... .......... .......... .......... .......... 168 GCATCAAGAT CAGTTCTTTA TGTTAATTTG TCTTAAAGGG TTCATCAAGG ACCCCTTTGG 2044 .......... .......... .......... .......... .......... .......... 168 CTCTACTTTG CTGTTCCTGT TTTTTTTTTT TTTTTGGAGT TTTATCTTTT TGCTGGTTTC 2104 .......... .......... .......... .......... .......... .......... 168 TCTGGCTTTA GAAACTGCAT GTGCAGAAGA TAATCAATGA CTGGTTCTTT TTCTTTTGGG 2164 .......... .......... .......... .......... .......... .......... 168 GAATTTAAGG TTTTGTTATG TAAATGGTTT TTTTTTCTGA TTTTTCTGCT GTAATTTTTT 2224 .......... .......... .......... .......... .......... .......... 168 ATTTTACACA TTGACTTGAA TTTGTCTGAA AGGGTTTTTC AAGGATCCTT TTGTTGATGG 2284 .......... .......... .......... .......... .......... .......... 168 ATGTATTTTG ATTTGTGGAT TGATTGAGGT TTTAAGGCTT TTTCTGTAAA AAGCTTCTTC 2344 .......... .......... .......... .......... .......... .......... 168 TTTTAATTCA TGGTTGATGC TTCTAGAATC TGGATTTGCT TGATGAGTTC TAGGTTATAA 2404 .......... .......... .......... .......... .......... .......... 168 GGTTTCCTCT TTTTATTTAA TTTGCTGCTT GTTTTTTGGT ATTTAAAATC TCTGTGTCCA 2464 .......... .......... .......... .......... .......... .......... 168 GAATTTTACA AAAATATTAA TAAATCTGGA TTTGTCTTTG TGTTCTGTGT TGCTGCAAGT 2524 .......... .......... .......... .......... .......... .......... 168 TAATGGTTTT TCCATTTCTG TGACAGTCTA GTCAATTGGA ATGTAAAATC TGTTTTTCTA 2584 .......... .......... .......... .......... .......... .......... 168 TTTTTGTGTA TGTATTTGGA TCTATGTCAA GAGGTTCCAG TGATCTGTGT TAATAGAAGT 2644 .......... .......... .......... .......... .......... .......... 168 GATTCTTTTA GCCAAATTGT CTTCTTGTTA TGTGTAGTGG TGGATCCAAT GTAATGGTAC 2704 .......... .......... .......... .......... .......... .......... 168 CAGGTTCATC TGAACCTAAT AGTTTCGACT CGGAGCATAA ATTTATGTGT AGGAATTCAC 2764 .......... .......... .......... .......... .......... .......... 168 TAAAATTGCA ATAAATAGTA GACATGAATG ATGTTGATGA CGACATGCTT GAGATGGTTG 2824 .......... .......... .......... .......... .......... .......... 168 TATTAATAGC TTGCATTAGT TTCGATCTTT TCTATGGTAT CAATTCCCAT AGTTATACGT 2884 .......... .......... .......... .......... .......... .......... 168 TGTTGTCGAA ATGTTTATTT AGTTATTCTT TGACATGAAA TTTTTTTACT TTATGAGTAA 2944 .......... .......... .......... .......... .......... .......... 168 CTGATAATAT ACTTGCAATT ACAGGTGTGG ACACTGTAAG AGTCTTGCTC CTGAGGTACA 3004 |||||| |||||||||| |||||||||| ||||| .......... .......... ....GTGTGG ACACTGTAAG AGTCTTGCTC CTGAG..... 199 CTTTCTTCTA TACAGTGCTT AATGAAGGAA GGAATATCAT TTTTCTCTGT CATTATGTTT 3064 .......... .......... .......... .......... .......... .......... 199 TTTCTTGGCA TTTTCAATCT ATGCAACTGA TTTAATGTTA AATTATGTTT CTTTCCAGTA 3124 || .......... .......... .......... .......... .......... ........TA 201 TGAAAAAGCT GCCTCAGAGC TGAGTAGTCA TGACCCTCCA ATTGTTCTAG CTAAGTATGA 3184 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAAAAAGCT GCCTCAGAGC TGAGTAGTCA TGACCCTCCA ATTGTTCTAG CTAAGTATGA 261 TGCAAATGAT GAAGCCAATA GAGAACTTTC AAAACAGTAC GAGATCCAGG GTTTCCCAAC 3244 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCAAATGAT GAAGCCAATA GAGAACTTTC AAAACAGTAC GAGATCCAGG GTTTCCCAAC 321 TATTAAGATA TTGAGAGATG GAGGAAAGAA AGTTCAAGAC TATAACGGTC CTCGTGAAGC 3304 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATTAAGATA TTGAGAGATG GAGGAAAGAA AGTTCAAGAC TATAACGGTC CTCGTGAAGC 381 AGCTGGTATT GTATCCTACT TGAAGAAACA AGTGGGTCCT GCATCTGCTG AAATCAAGTC 3364 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCTGGTATT GTATCCTACT TGAAGAAACA AGTGGGTCCT GCATCTGCTG AAATCAAGTC 441 GAAGGAAGAT GCCACAAACC TTATTGATGA GAAAAGTATC TTTGTTGTAA GTGGTGATAC 3424 |||||||||| |||||||||| |||||||||| |||||||||| |||||| GAAGGAAGAT GCCACAAACC TTATTGATGA GAAAAGTATC TTTGTT.... .......... 487 TTTTGATGTT TTACTTATCA TTACTGAAGT TTATTTTCAG CATGCCATAG CTTCTTGCTG 3484 .......... .......... .......... .......... .......... .......... 487 TCTAAAATCT TTCTGTTTCT TTAGGTTGGT ATATTTCCAG ACCCCTCCGG AGAGAAATTC 3544 |||||| |||||||||| |||||||||| |||||||||| .......... .......... ....GTTGGT ATATTTCCAG ACCCCTCCGG AGAGAAATTC 523 GAGAACTATT TAACGCTAGC TGAAAAACTG CGAGGCGAGT TCGATTTTGC TCACACTGTT 3604 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGAACTATT TAACGCTAGC TGAAAAACTG CGAGGCGAGT TCGATTTTGC TCACACTGTT 583 GATGCTAAAC ACCTCCCTCG GGGTGGACCA GTCAACAAGC CCACTCTTCG TCTTCTAAAG 3664 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATGCTAAAC ACCTCCCTCG GGGTGGACCA GTCAACAAGC CCACTCTTCG TCTTCTAAAG 643 CCATTTGATG AACTCTTTGT TGATTTTGAG GTATTACAGT TATCTGTGTA TATTTTTATC 3724 |||||||||| |||||||||| |||||||||| CCATTTGATG AACTCTTTGT TGATTTTGAG .......... .......... .......... 673 TTTGATACTC ATTGTATTAT GGTTATGAGG CTCAACTCTG TCCTATGTTA TCTTTTAATT 3784 .......... .......... .......... .......... .......... .......... 673 GGCCATTGAT TGTACATACT TGCAGGACTT TGATGTCGAT GCAATGGAGA AGTTCATCTC 3844 ||||| |||||||||| |||||||||| | |||||||| .......... .......... .....GACTT TGATGTCGAT GCAATGGAGA A-TTCATCTC 707 AGAATCTAGT ATTCCTGTTG TTACTATTTT TGACAATGAC CCAAACAACC ATCCTTATGT 3904 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| AGAATCTAGT ATTCCTGTTG TTACTATTTT TGACAATGAC CCAAACAACC ATCCTTATGN 767 TAACAAGTTC TTCGAAGGCA CCAACGCCAA GGTACTTGAT TCTGCGAGCT GTAATGCTTC 3964 |||||||||| |||||||||| |||||||||| | TAACAAGTTC TTCGAAGGCA CCAACGCCAA G......... .......... .......... 798 AATTTGACCT TATATTTCAA CGTCAAGCAA TTCTAGGATC TTCTCATGAA TTTTACAGTT 4024 .......... .......... .......... .......... .......... .......... 798 ATATGCTTGT ACTTGTATTA TTTTCTTTTC ATTCACTAAT ATTTGACAAT TAACTTCAAA 4084 .......... .......... .......... .......... .......... .......... 798 GTTCTAAGAG ATTGATTTGT TTTTTTGACA TTTGCAAATC TACAGGCATT GCTA-TTTGT 4143 ||||| |||| ||||| .......... .......... .......... .......... .....GCATT GCTATTTTGT 813 GAACTTTAGC TCTGAATTT 4162 |||||||||| ||||||||| GAACTTTAGC TCTGAATTT 832 hqPGS_C06HBa0054K13.1-11+_SGN-E316989+ (1625 1792,2969 2999,3123 3410,3509 3694,3810 3935,4130 4162) ******************************************************************************** EST sequence 105 +strand 695 n (File: SGN-E321595+) 1 AAAAATGGCA AAGAGTGGCA TTTTGGTAAT TGTTTCAGCT CTTGTTGTTC TTGCAGTTTG 61 TGGTGTTTTT GCTGAGGAGA ACGAATATGT GTTGACTTTG GACCATTCTA ACCTCACTGA 121 GACTGTTGCT AAGCACAACT TCATTGTTGT TGAATTCTAT GCACCTTGGT GTGGACACTG 181 TAAGAGTCTT GCTCCTGAGT ATGAAAAAGC TGCCTCAGAG CTGAGTAGTC ATGACCCTCC 241 AATTGTTCTA GCTAAGTATG ATGCAAATGA TGAAGCCAAT AGAGAACTTT CAAAACAGTA 301 CGAGATCCAG GGTTTCCCAA CTATTAAGAT ATTGAGAGAT GGAGGAAAGA AAGTTCAAGA 361 CTATAACGGT CCTCGTGAAG CAGCTGGTAT TGTATCCTAC TTGAAGAAAC AAGTGGGTCC 421 TGCATCTGCT GAAATCAAGT CGAAGGAAGA TGCCACAAAC CTTATTGATG AGAAAAGTAT 481 CTTTGTTGTT GGTATATTTC CAGACCCCTC CGGAGAGAAA TTCGAGAACT ATTTAACGCT 541 AGCTGAAAAA CTGCGAGGCG AGTTCGATTT TGCTCACACT GTTGATGCTA AACACCTCCC 601 TCGGGGTGGA CCAGTCAACA AGCCCACTCT TCGTCTTCTA AAGCCATTTG ATGAACTCTT 661 TGTTGATTTT GAGGACTTTG ATGTCGATGC AATGG Predicted gene structure (within gDNA segment 1025 to 4515): Exon 1 1625 1792 ( 168 n); cDNA 1 168 ( 168 n); score: 1.000 Intron 1 1793 2968 (1176 n); Pd: 1.000 (s: 1.00), Pa: 0.997 (s: 0) Exon 2 2969 2999 ( 31 n); cDNA 169 199 ( 31 n); score: 1.000 Intron 2 3000 3122 ( 123 n); Pd: 0.917 (s: 0), Pa: 0.997 (s: 1.00) Exon 3 3123 3410 ( 288 n); cDNA 200 487 ( 288 n); score: 1.000 Intron 3 3411 3508 ( 98 n); Pd: 0.907 (s: 1.00), Pa: 0.997 (s: 1.00) Exon 4 3509 3694 ( 186 n); cDNA 488 673 ( 186 n); score: 1.000 Intron 4 3695 3809 ( 115 n); Pd: 0.988 (s: 1.00), Pa: 0.999 (s: 0) Exon 5 3810 3831 ( 22 n); cDNA 674 695 ( 22 n); score: 1.000 MATCH C06HBa0054K13.1-11+ SGN-E321595+ 1.000 695 1.000 C PGS_C06HBa0054K13.1-11+_SGN-E321595+ (1625 1792,2969 2999,3123 3410,3509 3694,3810 3831) Alignment (genomic DNA sequence = upper lines): AAAAATGGCA AAGAGTGGCA TTTTGGTAAT TGTTTCAGCT CTTGTTGTTC TTGCAGTTTG 1684 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAAATGGCA AAGAGTGGCA TTTTGGTAAT TGTTTCAGCT CTTGTTGTTC TTGCAGTTTG 60 TGGTGTTTTT GCTGAGGAGA ACGAATATGT GTTGACTTTG GACCATTCTA ACCTCACTGA 1744 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGTGTTTTT GCTGAGGAGA ACGAATATGT GTTGACTTTG GACCATTCTA ACCTCACTGA 120 GACTGTTGCT AAGCACAACT TCATTGTTGT TGAATTCTAT GCACCTTGGT AAGTCATCTG 1804 |||||||||| |||||||||| |||||||||| |||||||||| |||||||| GACTGTTGCT AAGCACAACT TCATTGTTGT TGAATTCTAT GCACCTTG.. .......... 168 CTGTTTTTTT TTCTATTTAT TTTCTTGAAA AAAGTTCATT TTTTTTGCTT GTTGAATCTG 1864 .......... .......... .......... .......... .......... .......... 168 TATGTGCAGA ATGTAATGAA TGATTGGATG TAAGGGGTTT TGTTTTTGAT CTGTTTTTTT 1924 .......... .......... .......... .......... .......... .......... 168 TTTGTTATTT TAGTGAATTT TTGCTGTAAT TTTTTTGTTT TCATAAGCTG TGTGAGGAAT 1984 .......... .......... .......... .......... .......... .......... 168 GCATCAAGAT CAGTTCTTTA TGTTAATTTG TCTTAAAGGG TTCATCAAGG ACCCCTTTGG 2044 .......... .......... .......... .......... .......... .......... 168 CTCTACTTTG CTGTTCCTGT TTTTTTTTTT TTTTTGGAGT TTTATCTTTT TGCTGGTTTC 2104 .......... .......... .......... .......... .......... .......... 168 TCTGGCTTTA GAAACTGCAT GTGCAGAAGA TAATCAATGA CTGGTTCTTT TTCTTTTGGG 2164 .......... .......... .......... .......... .......... .......... 168 GAATTTAAGG TTTTGTTATG TAAATGGTTT TTTTTTCTGA TTTTTCTGCT GTAATTTTTT 2224 .......... .......... .......... .......... .......... .......... 168 ATTTTACACA TTGACTTGAA TTTGTCTGAA AGGGTTTTTC AAGGATCCTT TTGTTGATGG 2284 .......... .......... .......... .......... .......... .......... 168 ATGTATTTTG ATTTGTGGAT TGATTGAGGT TTTAAGGCTT TTTCTGTAAA AAGCTTCTTC 2344 .......... .......... .......... .......... .......... .......... 168 TTTTAATTCA TGGTTGATGC TTCTAGAATC TGGATTTGCT TGATGAGTTC TAGGTTATAA 2404 .......... .......... .......... .......... .......... .......... 168 GGTTTCCTCT TTTTATTTAA TTTGCTGCTT GTTTTTTGGT ATTTAAAATC TCTGTGTCCA 2464 .......... .......... .......... .......... .......... .......... 168 GAATTTTACA AAAATATTAA TAAATCTGGA TTTGTCTTTG TGTTCTGTGT TGCTGCAAGT 2524 .......... .......... .......... .......... .......... .......... 168 TAATGGTTTT TCCATTTCTG TGACAGTCTA GTCAATTGGA ATGTAAAATC TGTTTTTCTA 2584 .......... .......... .......... .......... .......... .......... 168 TTTTTGTGTA TGTATTTGGA TCTATGTCAA GAGGTTCCAG TGATCTGTGT TAATAGAAGT 2644 .......... .......... .......... .......... .......... .......... 168 GATTCTTTTA GCCAAATTGT CTTCTTGTTA TGTGTAGTGG TGGATCCAAT GTAATGGTAC 2704 .......... .......... .......... .......... .......... .......... 168 CAGGTTCATC TGAACCTAAT AGTTTCGACT CGGAGCATAA ATTTATGTGT AGGAATTCAC 2764 .......... .......... .......... .......... .......... .......... 168 TAAAATTGCA ATAAATAGTA GACATGAATG ATGTTGATGA CGACATGCTT GAGATGGTTG 2824 .......... .......... .......... .......... .......... .......... 168 TATTAATAGC TTGCATTAGT TTCGATCTTT TCTATGGTAT CAATTCCCAT AGTTATACGT 2884 .......... .......... .......... .......... .......... .......... 168 TGTTGTCGAA ATGTTTATTT AGTTATTCTT TGACATGAAA TTTTTTTACT TTATGAGTAA 2944 .......... .......... .......... .......... .......... .......... 168 CTGATAATAT ACTTGCAATT ACAGGTGTGG ACACTGTAAG AGTCTTGCTC CTGAGGTACA 3004 |||||| |||||||||| |||||||||| ||||| .......... .......... ....GTGTGG ACACTGTAAG AGTCTTGCTC CTGAG..... 199 CTTTCTTCTA TACAGTGCTT AATGAAGGAA GGAATATCAT TTTTCTCTGT CATTATGTTT 3064 .......... .......... .......... .......... .......... .......... 199 TTTCTTGGCA TTTTCAATCT ATGCAACTGA TTTAATGTTA AATTATGTTT CTTTCCAGTA 3124 || .......... .......... .......... .......... .......... ........TA 201 TGAAAAAGCT GCCTCAGAGC TGAGTAGTCA TGACCCTCCA ATTGTTCTAG CTAAGTATGA 3184 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAAAAAGCT GCCTCAGAGC TGAGTAGTCA TGACCCTCCA ATTGTTCTAG CTAAGTATGA 261 TGCAAATGAT GAAGCCAATA GAGAACTTTC AAAACAGTAC GAGATCCAGG GTTTCCCAAC 3244 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCAAATGAT GAAGCCAATA GAGAACTTTC AAAACAGTAC GAGATCCAGG GTTTCCCAAC 321 TATTAAGATA TTGAGAGATG GAGGAAAGAA AGTTCAAGAC TATAACGGTC CTCGTGAAGC 3304 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATTAAGATA TTGAGAGATG GAGGAAAGAA AGTTCAAGAC TATAACGGTC CTCGTGAAGC 381 AGCTGGTATT GTATCCTACT TGAAGAAACA AGTGGGTCCT GCATCTGCTG AAATCAAGTC 3364 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCTGGTATT GTATCCTACT TGAAGAAACA AGTGGGTCCT GCATCTGCTG AAATCAAGTC 441 GAAGGAAGAT GCCACAAACC TTATTGATGA GAAAAGTATC TTTGTTGTAA GTGGTGATAC 3424 |||||||||| |||||||||| |||||||||| |||||||||| |||||| GAAGGAAGAT GCCACAAACC TTATTGATGA GAAAAGTATC TTTGTT.... .......... 487 TTTTGATGTT TTACTTATCA TTACTGAAGT TTATTTTCAG CATGCCATAG CTTCTTGCTG 3484 .......... .......... .......... .......... .......... .......... 487 TCTAAAATCT TTCTGTTTCT TTAGGTTGGT ATATTTCCAG ACCCCTCCGG AGAGAAATTC 3544 |||||| |||||||||| |||||||||| |||||||||| .......... .......... ....GTTGGT ATATTTCCAG ACCCCTCCGG AGAGAAATTC 523 GAGAACTATT TAACGCTAGC TGAAAAACTG CGAGGCGAGT TCGATTTTGC TCACACTGTT 3604 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGAACTATT TAACGCTAGC TGAAAAACTG CGAGGCGAGT TCGATTTTGC TCACACTGTT 583 GATGCTAAAC ACCTCCCTCG GGGTGGACCA GTCAACAAGC CCACTCTTCG TCTTCTAAAG 3664 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATGCTAAAC ACCTCCCTCG GGGTGGACCA GTCAACAAGC CCACTCTTCG TCTTCTAAAG 643 CCATTTGATG AACTCTTTGT TGATTTTGAG GTATTACAGT TATCTGTGTA TATTTTTATC 3724 |||||||||| |||||||||| |||||||||| CCATTTGATG AACTCTTTGT TGATTTTGAG .......... .......... .......... 673 TTTGATACTC ATTGTATTAT GGTTATGAGG CTCAACTCTG TCCTATGTTA TCTTTTAATT 3784 .......... .......... .......... .......... .......... .......... 673 GGCCATTGAT TGTACATACT TGCAGGACTT TGATGTCGAT GCAATGG 3831 ||||| |||||||||| ||||||| .......... .......... .....GACTT TGATGTCGAT GCAATGG 695 hqPGS_C06HBa0054K13.1-11+_SGN-E321595+ (1625 1792,2969 2999,3123 3410,3509 3694,3810 3831) ******************************************************************************** EST sequence 65 +strand 689 n (File: SGN-E324215+) 1 AAAAATGGCA AAGAGTGGCA TTTTGGTAAT TGTTTCAGCT CTTGTTGTTC TTGCAGTTTG 61 TGGTGTTTTT GCTGAGGAGA ACGAATATGT GTTGACTTTG GACCATTCTA ACCTCACTGA 121 GACTGTTGCT AAGCACAACT TCATTGTTGT TGAATTCTAT GCACCTTGGT GTGGACACTG 181 TAAGAGTCTT GCTCCTGAGT ATGAAAAAGC TGCCTCAGAG CTGAGTAGTC ATGACCCTCC 241 AATTGTTCTA GCTAAGTATG ATGCAAATGA TGAAGCCAAT AGAGAACTTT CAAAACAGTA 301 CGAGATCCAG GGTTTCCCAA CTATTAAGAT ATTGAGAGAT GGAGGAAAGA AAGTTCAAGA 361 CTATAACGGT CCTCGTGAAG CAGCTGGTAT TGTATCCTAC TTGAAGAAAC AAGTGGGTCC 421 TGCATCTGCT GAAATCAAGT CGAAGGAAGA TGCCACAAAC CTTATTGATG AGAAAAGTAT 481 CTTTGTTGTT GGTATATTTC CAGACCCCTC CGGAGAGAAA TTCGAGAACT ATTTAACGCT 541 AGCTGAAAAA CTGCGAGGCG AGTTCGATTT TGCTCACACT GTTGATGCTA AACACCTCCC 601 TCGGGGTGGA CCAGTCAACA AGCCCACTCT TCGTCTTCTA AAGCCATTTG ATGAACTCTT 661 TGTTGATTTT GAGGACTTTG ATGTCGATG Predicted gene structure (within gDNA segment 1025 to 4455): Exon 1 1625 1792 ( 168 n); cDNA 1 168 ( 168 n); score: 1.000 Intron 1 1793 2968 (1176 n); Pd: 1.000 (s: 1.00), Pa: 0.997 (s: 0) Exon 2 2969 2999 ( 31 n); cDNA 169 199 ( 31 n); score: 1.000 Intron 2 3000 3122 ( 123 n); Pd: 0.917 (s: 0), Pa: 0.997 (s: 1.00) Exon 3 3123 3410 ( 288 n); cDNA 200 487 ( 288 n); score: 1.000 Intron 3 3411 3508 ( 98 n); Pd: 0.907 (s: 1.00), Pa: 0.997 (s: 1.00) Exon 4 3509 3694 ( 186 n); cDNA 488 673 ( 186 n); score: 1.000 Intron 4 3695 3809 ( 115 n); Pd: 0.988 (s: 1.00), Pa: 0.999 (s: 0) Exon 5 3810 3825 ( 16 n); cDNA 674 689 ( 16 n); score: 1.000 MATCH C06HBa0054K13.1-11+ SGN-E324215+ 1.000 689 1.000 C PGS_C06HBa0054K13.1-11+_SGN-E324215+ (1625 1792,2969 2999,3123 3410,3509 3694,3810 3825) Alignment (genomic DNA sequence = upper lines): AAAAATGGCA AAGAGTGGCA TTTTGGTAAT TGTTTCAGCT CTTGTTGTTC TTGCAGTTTG 1684 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAAATGGCA AAGAGTGGCA TTTTGGTAAT TGTTTCAGCT CTTGTTGTTC TTGCAGTTTG 60 TGGTGTTTTT GCTGAGGAGA ACGAATATGT GTTGACTTTG GACCATTCTA ACCTCACTGA 1744 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGTGTTTTT GCTGAGGAGA ACGAATATGT GTTGACTTTG GACCATTCTA ACCTCACTGA 120 GACTGTTGCT AAGCACAACT TCATTGTTGT TGAATTCTAT GCACCTTGGT AAGTCATCTG 1804 |||||||||| |||||||||| |||||||||| |||||||||| |||||||| GACTGTTGCT AAGCACAACT TCATTGTTGT TGAATTCTAT GCACCTTG.. .......... 168 CTGTTTTTTT TTCTATTTAT TTTCTTGAAA AAAGTTCATT TTTTTTGCTT GTTGAATCTG 1864 .......... .......... .......... .......... .......... .......... 168 TATGTGCAGA ATGTAATGAA TGATTGGATG TAAGGGGTTT TGTTTTTGAT CTGTTTTTTT 1924 .......... .......... .......... .......... .......... .......... 168 TTTGTTATTT TAGTGAATTT TTGCTGTAAT TTTTTTGTTT TCATAAGCTG TGTGAGGAAT 1984 .......... .......... .......... .......... .......... .......... 168 GCATCAAGAT CAGTTCTTTA TGTTAATTTG TCTTAAAGGG TTCATCAAGG ACCCCTTTGG 2044 .......... .......... .......... .......... .......... .......... 168 CTCTACTTTG CTGTTCCTGT TTTTTTTTTT TTTTTGGAGT TTTATCTTTT TGCTGGTTTC 2104 .......... .......... .......... .......... .......... .......... 168 TCTGGCTTTA GAAACTGCAT GTGCAGAAGA TAATCAATGA CTGGTTCTTT TTCTTTTGGG 2164 .......... .......... .......... .......... .......... .......... 168 GAATTTAAGG TTTTGTTATG TAAATGGTTT TTTTTTCTGA TTTTTCTGCT GTAATTTTTT 2224 .......... .......... .......... .......... .......... .......... 168 ATTTTACACA TTGACTTGAA TTTGTCTGAA AGGGTTTTTC AAGGATCCTT TTGTTGATGG 2284 .......... .......... .......... .......... .......... .......... 168 ATGTATTTTG ATTTGTGGAT TGATTGAGGT TTTAAGGCTT TTTCTGTAAA AAGCTTCTTC 2344 .......... .......... .......... .......... .......... .......... 168 TTTTAATTCA TGGTTGATGC TTCTAGAATC TGGATTTGCT TGATGAGTTC TAGGTTATAA 2404 .......... .......... .......... .......... .......... .......... 168 GGTTTCCTCT TTTTATTTAA TTTGCTGCTT GTTTTTTGGT ATTTAAAATC TCTGTGTCCA 2464 .......... .......... .......... .......... .......... .......... 168 GAATTTTACA AAAATATTAA TAAATCTGGA TTTGTCTTTG TGTTCTGTGT TGCTGCAAGT 2524 .......... .......... .......... .......... .......... .......... 168 TAATGGTTTT TCCATTTCTG TGACAGTCTA GTCAATTGGA ATGTAAAATC TGTTTTTCTA 2584 .......... .......... .......... .......... .......... .......... 168 TTTTTGTGTA TGTATTTGGA TCTATGTCAA GAGGTTCCAG TGATCTGTGT TAATAGAAGT 2644 .......... .......... .......... .......... .......... .......... 168 GATTCTTTTA GCCAAATTGT CTTCTTGTTA TGTGTAGTGG TGGATCCAAT GTAATGGTAC 2704 .......... .......... .......... .......... .......... .......... 168 CAGGTTCATC TGAACCTAAT AGTTTCGACT CGGAGCATAA ATTTATGTGT AGGAATTCAC 2764 .......... .......... .......... .......... .......... .......... 168 TAAAATTGCA ATAAATAGTA GACATGAATG ATGTTGATGA CGACATGCTT GAGATGGTTG 2824 .......... .......... .......... .......... .......... .......... 168 TATTAATAGC TTGCATTAGT TTCGATCTTT TCTATGGTAT CAATTCCCAT AGTTATACGT 2884 .......... .......... .......... .......... .......... .......... 168 TGTTGTCGAA ATGTTTATTT AGTTATTCTT TGACATGAAA TTTTTTTACT TTATGAGTAA 2944 .......... .......... .......... .......... .......... .......... 168 CTGATAATAT ACTTGCAATT ACAGGTGTGG ACACTGTAAG AGTCTTGCTC CTGAGGTACA 3004 |||||| |||||||||| |||||||||| ||||| .......... .......... ....GTGTGG ACACTGTAAG AGTCTTGCTC CTGAG..... 199 CTTTCTTCTA TACAGTGCTT AATGAAGGAA GGAATATCAT TTTTCTCTGT CATTATGTTT 3064 .......... .......... .......... .......... .......... .......... 199 TTTCTTGGCA TTTTCAATCT ATGCAACTGA TTTAATGTTA AATTATGTTT CTTTCCAGTA 3124 || .......... .......... .......... .......... .......... ........TA 201 TGAAAAAGCT GCCTCAGAGC TGAGTAGTCA TGACCCTCCA ATTGTTCTAG CTAAGTATGA 3184 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAAAAAGCT GCCTCAGAGC TGAGTAGTCA TGACCCTCCA ATTGTTCTAG CTAAGTATGA 261 TGCAAATGAT GAAGCCAATA GAGAACTTTC AAAACAGTAC GAGATCCAGG GTTTCCCAAC 3244 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCAAATGAT GAAGCCAATA GAGAACTTTC AAAACAGTAC GAGATCCAGG GTTTCCCAAC 321 TATTAAGATA TTGAGAGATG GAGGAAAGAA AGTTCAAGAC TATAACGGTC CTCGTGAAGC 3304 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATTAAGATA TTGAGAGATG GAGGAAAGAA AGTTCAAGAC TATAACGGTC CTCGTGAAGC 381 AGCTGGTATT GTATCCTACT TGAAGAAACA AGTGGGTCCT GCATCTGCTG AAATCAAGTC 3364 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCTGGTATT GTATCCTACT TGAAGAAACA AGTGGGTCCT GCATCTGCTG AAATCAAGTC 441 GAAGGAAGAT GCCACAAACC TTATTGATGA GAAAAGTATC TTTGTTGTAA GTGGTGATAC 3424 |||||||||| |||||||||| |||||||||| |||||||||| |||||| GAAGGAAGAT GCCACAAACC TTATTGATGA GAAAAGTATC TTTGTT.... .......... 487 TTTTGATGTT TTACTTATCA TTACTGAAGT TTATTTTCAG CATGCCATAG CTTCTTGCTG 3484 .......... .......... .......... .......... .......... .......... 487 TCTAAAATCT TTCTGTTTCT TTAGGTTGGT ATATTTCCAG ACCCCTCCGG AGAGAAATTC 3544 |||||| |||||||||| |||||||||| |||||||||| .......... .......... ....GTTGGT ATATTTCCAG ACCCCTCCGG AGAGAAATTC 523 GAGAACTATT TAACGCTAGC TGAAAAACTG CGAGGCGAGT TCGATTTTGC TCACACTGTT 3604 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGAACTATT TAACGCTAGC TGAAAAACTG CGAGGCGAGT TCGATTTTGC TCACACTGTT 583 GATGCTAAAC ACCTCCCTCG GGGTGGACCA GTCAACAAGC CCACTCTTCG TCTTCTAAAG 3664 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATGCTAAAC ACCTCCCTCG GGGTGGACCA GTCAACAAGC CCACTCTTCG TCTTCTAAAG 643 CCATTTGATG AACTCTTTGT TGATTTTGAG GTATTACAGT TATCTGTGTA TATTTTTATC 3724 |||||||||| |||||||||| |||||||||| CCATTTGATG AACTCTTTGT TGATTTTGAG .......... .......... .......... 673 TTTGATACTC ATTGTATTAT GGTTATGAGG CTCAACTCTG TCCTATGTTA TCTTTTAATT 3784 .......... .......... .......... .......... .......... .......... 673 GGCCATTGAT TGTACATACT TGCAGGACTT TGATGTCGAT G 3825 ||||| |||||||||| | .......... .......... .....GACTT TGATGTCGAT G 689 hqPGS_C06HBa0054K13.1-11+_SGN-E324215+ (1625 1792,2969 2999,3123 3410,3509 3694,3810 3825) ******************************************************************************** EST sequence 1 +strand 607 n (File: SGN-E324863+) 1 AAAAATGGCA AAGAGTGGCA TTTTGGTAAT TGTTTCAGCT CTTGTTGTTC TTGCAGTTTG 61 TGGTGTTTTT GCTGAGGAGA ACGAATATGT GTTGACTTTG GACCATTCTA ACCTCACTGA 121 GACTGTTGCT AAGCACAACT TCATTGTTGT TGAATTCTAT GCACCTTGGT GTGGACACTG 181 TAAGAGTCTT GCTCCTGAGT ATGAAAAAGC TGCCTCAGAG CTGAGTAGTC ATGACCCTCC 241 AATTGTTCTA GCTAAGTATG ATGCAAATGA TGAAGCCAAT AGAGAACTTT CAAAACAGTA 301 CGAGATCCAG GGTTTCCCAA CTATTAAGAT ATTGAGAGAT GGAGGAAAGA AAGTTCAAGA 361 CTATAACGGT CCTCGTGAAG CAGCTGGTAT TGTATCCTAC TTGAAGAAAC AAGTGGGTCC 421 TGCATCTGCT GAAATCAAGT CGAAGGAAGA TGCCACAAAC CTTATTGATG AGAAAAGTAT 481 CTTTGTTGTT GGTATATTTC CAGACCCCTC CGGAGAGAAA TTCGAGAACT ATTTAACGCT 541 AGCTGAAAAA CTGCGAGGCG AGTTCGANTT TGCTCACACT GTTGATGCTA AACACCTCCC 601 TCGGGGT Predicted gene structure (within gDNA segment 1025 to 4238): Exon 1 1625 1792 ( 168 n); cDNA 1 168 ( 168 n); score: 1.000 Intron 1 1793 2968 (1176 n); Pd: 1.000 (s: 1.00), Pa: 0.997 (s: 0) Exon 2 2969 2999 ( 31 n); cDNA 169 199 ( 31 n); score: 1.000 Intron 2 3000 3122 ( 123 n); Pd: 0.917 (s: 0), Pa: 0.997 (s: 1.00) Exon 3 3123 3410 ( 288 n); cDNA 200 487 ( 288 n); score: 1.000 Intron 3 3411 3508 ( 98 n); Pd: 0.907 (s: 1.00), Pa: 0.997 (s: 1.00) Exon 4 3509 3628 ( 120 n); cDNA 488 607 ( 120 n); score: 0.992 MATCH C06HBa0054K13.1-11+ SGN-E324863+ 0.998 607 1.000 C PGS_C06HBa0054K13.1-11+_SGN-E324863+ (1625 1792,2969 2999,3123 3410,3509 3628) Alignment (genomic DNA sequence = upper lines): AAAAATGGCA AAGAGTGGCA TTTTGGTAAT TGTTTCAGCT CTTGTTGTTC TTGCAGTTTG 1684 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAAATGGCA AAGAGTGGCA TTTTGGTAAT TGTTTCAGCT CTTGTTGTTC TTGCAGTTTG 60 TGGTGTTTTT GCTGAGGAGA ACGAATATGT GTTGACTTTG GACCATTCTA ACCTCACTGA 1744 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGTGTTTTT GCTGAGGAGA ACGAATATGT GTTGACTTTG GACCATTCTA ACCTCACTGA 120 GACTGTTGCT AAGCACAACT TCATTGTTGT TGAATTCTAT GCACCTTGGT AAGTCATCTG 1804 |||||||||| |||||||||| |||||||||| |||||||||| |||||||| GACTGTTGCT AAGCACAACT TCATTGTTGT TGAATTCTAT GCACCTTG.. .......... 168 CTGTTTTTTT TTCTATTTAT TTTCTTGAAA AAAGTTCATT TTTTTTGCTT GTTGAATCTG 1864 .......... .......... .......... .......... .......... .......... 168 TATGTGCAGA ATGTAATGAA TGATTGGATG TAAGGGGTTT TGTTTTTGAT CTGTTTTTTT 1924 .......... .......... .......... .......... .......... .......... 168 TTTGTTATTT TAGTGAATTT TTGCTGTAAT TTTTTTGTTT TCATAAGCTG TGTGAGGAAT 1984 .......... .......... .......... .......... .......... .......... 168 GCATCAAGAT CAGTTCTTTA TGTTAATTTG TCTTAAAGGG TTCATCAAGG ACCCCTTTGG 2044 .......... .......... .......... .......... .......... .......... 168 CTCTACTTTG CTGTTCCTGT TTTTTTTTTT TTTTTGGAGT TTTATCTTTT TGCTGGTTTC 2104 .......... .......... .......... .......... .......... .......... 168 TCTGGCTTTA GAAACTGCAT GTGCAGAAGA TAATCAATGA CTGGTTCTTT TTCTTTTGGG 2164 .......... .......... .......... .......... .......... .......... 168 GAATTTAAGG TTTTGTTATG TAAATGGTTT TTTTTTCTGA TTTTTCTGCT GTAATTTTTT 2224 .......... .......... .......... .......... .......... .......... 168 ATTTTACACA TTGACTTGAA TTTGTCTGAA AGGGTTTTTC AAGGATCCTT TTGTTGATGG 2284 .......... .......... .......... .......... .......... .......... 168 ATGTATTTTG ATTTGTGGAT TGATTGAGGT TTTAAGGCTT TTTCTGTAAA AAGCTTCTTC 2344 .......... .......... .......... .......... .......... .......... 168 TTTTAATTCA TGGTTGATGC TTCTAGAATC TGGATTTGCT TGATGAGTTC TAGGTTATAA 2404 .......... .......... .......... .......... .......... .......... 168 GGTTTCCTCT TTTTATTTAA TTTGCTGCTT GTTTTTTGGT ATTTAAAATC TCTGTGTCCA 2464 .......... .......... .......... .......... .......... .......... 168 GAATTTTACA AAAATATTAA TAAATCTGGA TTTGTCTTTG TGTTCTGTGT TGCTGCAAGT 2524 .......... .......... .......... .......... .......... .......... 168 TAATGGTTTT TCCATTTCTG TGACAGTCTA GTCAATTGGA ATGTAAAATC TGTTTTTCTA 2584 .......... .......... .......... .......... .......... .......... 168 TTTTTGTGTA TGTATTTGGA TCTATGTCAA GAGGTTCCAG TGATCTGTGT TAATAGAAGT 2644 .......... .......... .......... .......... .......... .......... 168 GATTCTTTTA GCCAAATTGT CTTCTTGTTA TGTGTAGTGG TGGATCCAAT GTAATGGTAC 2704 .......... .......... .......... .......... .......... .......... 168 CAGGTTCATC TGAACCTAAT AGTTTCGACT CGGAGCATAA ATTTATGTGT AGGAATTCAC 2764 .......... .......... .......... .......... .......... .......... 168 TAAAATTGCA ATAAATAGTA GACATGAATG ATGTTGATGA CGACATGCTT GAGATGGTTG 2824 .......... .......... .......... .......... .......... .......... 168 TATTAATAGC TTGCATTAGT TTCGATCTTT TCTATGGTAT CAATTCCCAT AGTTATACGT 2884 .......... .......... .......... .......... .......... .......... 168 TGTTGTCGAA ATGTTTATTT AGTTATTCTT TGACATGAAA TTTTTTTACT TTATGAGTAA 2944 .......... .......... .......... .......... .......... .......... 168 CTGATAATAT ACTTGCAATT ACAGGTGTGG ACACTGTAAG AGTCTTGCTC CTGAGGTACA 3004 |||||| |||||||||| |||||||||| ||||| .......... .......... ....GTGTGG ACACTGTAAG AGTCTTGCTC CTGAG..... 199 CTTTCTTCTA TACAGTGCTT AATGAAGGAA GGAATATCAT TTTTCTCTGT CATTATGTTT 3064 .......... .......... .......... .......... .......... .......... 199 TTTCTTGGCA TTTTCAATCT ATGCAACTGA TTTAATGTTA AATTATGTTT CTTTCCAGTA 3124 || .......... .......... .......... .......... .......... ........TA 201 TGAAAAAGCT GCCTCAGAGC TGAGTAGTCA TGACCCTCCA ATTGTTCTAG CTAAGTATGA 3184 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAAAAAGCT GCCTCAGAGC TGAGTAGTCA TGACCCTCCA ATTGTTCTAG CTAAGTATGA 261 TGCAAATGAT GAAGCCAATA GAGAACTTTC AAAACAGTAC GAGATCCAGG GTTTCCCAAC 3244 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCAAATGAT GAAGCCAATA GAGAACTTTC AAAACAGTAC GAGATCCAGG GTTTCCCAAC 321 TATTAAGATA TTGAGAGATG GAGGAAAGAA AGTTCAAGAC TATAACGGTC CTCGTGAAGC 3304 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATTAAGATA TTGAGAGATG GAGGAAAGAA AGTTCAAGAC TATAACGGTC CTCGTGAAGC 381 AGCTGGTATT GTATCCTACT TGAAGAAACA AGTGGGTCCT GCATCTGCTG AAATCAAGTC 3364 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCTGGTATT GTATCCTACT TGAAGAAACA AGTGGGTCCT GCATCTGCTG AAATCAAGTC 441 GAAGGAAGAT GCCACAAACC TTATTGATGA GAAAAGTATC TTTGTTGTAA GTGGTGATAC 3424 |||||||||| |||||||||| |||||||||| |||||||||| |||||| GAAGGAAGAT GCCACAAACC TTATTGATGA GAAAAGTATC TTTGTT.... .......... 487 TTTTGATGTT TTACTTATCA TTACTGAAGT TTATTTTCAG CATGCCATAG CTTCTTGCTG 3484 .......... .......... .......... .......... .......... .......... 487 TCTAAAATCT TTCTGTTTCT TTAGGTTGGT ATATTTCCAG ACCCCTCCGG AGAGAAATTC 3544 |||||| |||||||||| |||||||||| |||||||||| .......... .......... ....GTTGGT ATATTTCCAG ACCCCTCCGG AGAGAAATTC 523 GAGAACTATT TAACGCTAGC TGAAAAACTG CGAGGCGAGT TCGATTTTGC TCACACTGTT 3604 |||||||||| |||||||||| |||||||||| |||||||||| |||| ||||| |||||||||| GAGAACTATT TAACGCTAGC TGAAAAACTG CGAGGCGAGT TCGANTTTGC TCACACTGTT 583 GATGCTAAAC ACCTCCCTCG GGGT 3628 |||||||||| |||||||||| |||| GATGCTAAAC ACCTCCCTCG GGGT 607 hqPGS_C06HBa0054K13.1-11+_SGN-E324863+ (1625 1792,2969 2999,3123 3410,3509 3628) ******************************************************************************** EST sequence 30 +strand 602 n (File: SGN-E262749+) 1 AAAAATGGCA AAGAGTGGCA TTTTGGTAAT TGTTTCAGCT CTTGTTGTTC TTGCAGTTTG 61 TGGTGTTTTT GCTGAGGAGA ACGAATATGT GTTGACTTTG GACCATTCTA ACCTCACTGA 121 GACTGTTGCT AAGCACAACT TCATTGTTGT TGAATTCTAT GCACCTTGGT GTGGACACTG 181 TAAGAGTCTT GCTCCTGAGT ATGAAAAAGC TGCCTCAGAG CTGAGTAGTC ATGACCCTCC 241 AATTGTTCTA GCTAAGTATG ATGCAAATGA TGAAGCCAAT AGAGAACTTT CAAAACAGTA 301 CGAGATCCAG GGTTTCCCAA CTATTAAGAT ATTGAGAGAT GGAGGAAAGA AAGTTCAAGA 361 CTATAACGGT CCTCGTGAAG CAGCTGGTAT TGTATCCTAC TTGAAGAAAC AAGTGGGTCC 421 TGCATCTGCT GAAATCAAGT CGAAGGAAGA TGCCACAAAC CTTATTGATG AGAAAAGTAT 481 CTTTGTTGGT GGTATATTTC CAGACCCCTC CGGAGAGAAA TTCGAGAACT AGTTTACGCT 541 AGCTGAAAAA CTGCGAGGCG AGTTCGATTT TGCTCACACT GTTGATGCTA AACACCTCCC 601 TC Predicted gene structure (within gDNA segment 1025 to 4233): Exon 1 1625 1792 ( 168 n); cDNA 1 168 ( 168 n); score: 1.000 Intron 1 1793 2968 (1176 n); Pd: 1.000 (s: 1.00), Pa: 0.997 (s: 0) Exon 2 2969 2999 ( 31 n); cDNA 169 199 ( 31 n); score: 1.000 Intron 2 3000 3122 ( 123 n); Pd: 0.917 (s: 0), Pa: 0.997 (s: 1.00) Exon 3 3123 3410 ( 288 n); cDNA 200 487 ( 288 n); score: 1.000 Intron 3 3411 3508 ( 98 n); Pd: 0.907 (s: 1.00), Pa: 0.997 (s: 0.94) Exon 4 3509 3623 ( 115 n); cDNA 488 602 ( 115 n); score: 0.974 MATCH C06HBa0054K13.1-11+ SGN-E262749+ 0.995 602 1.000 C PGS_C06HBa0054K13.1-11+_SGN-E262749+ (1625 1792,2969 2999,3123 3410,3509 3623) Alignment (genomic DNA sequence = upper lines): AAAAATGGCA AAGAGTGGCA TTTTGGTAAT TGTTTCAGCT CTTGTTGTTC TTGCAGTTTG 1684 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAAATGGCA AAGAGTGGCA TTTTGGTAAT TGTTTCAGCT CTTGTTGTTC TTGCAGTTTG 60 TGGTGTTTTT GCTGAGGAGA ACGAATATGT GTTGACTTTG GACCATTCTA ACCTCACTGA 1744 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGTGTTTTT GCTGAGGAGA ACGAATATGT GTTGACTTTG GACCATTCTA ACCTCACTGA 120 GACTGTTGCT AAGCACAACT TCATTGTTGT TGAATTCTAT GCACCTTGGT AAGTCATCTG 1804 |||||||||| |||||||||| |||||||||| |||||||||| |||||||| GACTGTTGCT AAGCACAACT TCATTGTTGT TGAATTCTAT GCACCTTG.. .......... 168 CTGTTTTTTT TTCTATTTAT TTTCTTGAAA AAAGTTCATT TTTTTTGCTT GTTGAATCTG 1864 .......... .......... .......... .......... .......... .......... 168 TATGTGCAGA ATGTAATGAA TGATTGGATG TAAGGGGTTT TGTTTTTGAT CTGTTTTTTT 1924 .......... .......... .......... .......... .......... .......... 168 TTTGTTATTT TAGTGAATTT TTGCTGTAAT TTTTTTGTTT TCATAAGCTG TGTGAGGAAT 1984 .......... .......... .......... .......... .......... .......... 168 GCATCAAGAT CAGTTCTTTA TGTTAATTTG TCTTAAAGGG TTCATCAAGG ACCCCTTTGG 2044 .......... .......... .......... .......... .......... .......... 168 CTCTACTTTG CTGTTCCTGT TTTTTTTTTT TTTTTGGAGT TTTATCTTTT TGCTGGTTTC 2104 .......... .......... .......... .......... .......... .......... 168 TCTGGCTTTA GAAACTGCAT GTGCAGAAGA TAATCAATGA CTGGTTCTTT TTCTTTTGGG 2164 .......... .......... .......... .......... .......... .......... 168 GAATTTAAGG TTTTGTTATG TAAATGGTTT TTTTTTCTGA TTTTTCTGCT GTAATTTTTT 2224 .......... .......... .......... .......... .......... .......... 168 ATTTTACACA TTGACTTGAA TTTGTCTGAA AGGGTTTTTC AAGGATCCTT TTGTTGATGG 2284 .......... .......... .......... .......... .......... .......... 168 ATGTATTTTG ATTTGTGGAT TGATTGAGGT TTTAAGGCTT TTTCTGTAAA AAGCTTCTTC 2344 .......... .......... .......... .......... .......... .......... 168 TTTTAATTCA TGGTTGATGC TTCTAGAATC TGGATTTGCT TGATGAGTTC TAGGTTATAA 2404 .......... .......... .......... .......... .......... .......... 168 GGTTTCCTCT TTTTATTTAA TTTGCTGCTT GTTTTTTGGT ATTTAAAATC TCTGTGTCCA 2464 .......... .......... .......... .......... .......... .......... 168 GAATTTTACA AAAATATTAA TAAATCTGGA TTTGTCTTTG TGTTCTGTGT TGCTGCAAGT 2524 .......... .......... .......... .......... .......... .......... 168 TAATGGTTTT TCCATTTCTG TGACAGTCTA GTCAATTGGA ATGTAAAATC TGTTTTTCTA 2584 .......... .......... .......... .......... .......... .......... 168 TTTTTGTGTA TGTATTTGGA TCTATGTCAA GAGGTTCCAG TGATCTGTGT TAATAGAAGT 2644 .......... .......... .......... .......... .......... .......... 168 GATTCTTTTA GCCAAATTGT CTTCTTGTTA TGTGTAGTGG TGGATCCAAT GTAATGGTAC 2704 .......... .......... .......... .......... .......... .......... 168 CAGGTTCATC TGAACCTAAT AGTTTCGACT CGGAGCATAA ATTTATGTGT AGGAATTCAC 2764 .......... .......... .......... .......... .......... .......... 168 TAAAATTGCA ATAAATAGTA GACATGAATG ATGTTGATGA CGACATGCTT GAGATGGTTG 2824 .......... .......... .......... .......... .......... .......... 168 TATTAATAGC TTGCATTAGT TTCGATCTTT TCTATGGTAT CAATTCCCAT AGTTATACGT 2884 .......... .......... .......... .......... .......... .......... 168 TGTTGTCGAA ATGTTTATTT AGTTATTCTT TGACATGAAA TTTTTTTACT TTATGAGTAA 2944 .......... .......... .......... .......... .......... .......... 168 CTGATAATAT ACTTGCAATT ACAGGTGTGG ACACTGTAAG AGTCTTGCTC CTGAGGTACA 3004 |||||| |||||||||| |||||||||| ||||| .......... .......... ....GTGTGG ACACTGTAAG AGTCTTGCTC CTGAG..... 199 CTTTCTTCTA TACAGTGCTT AATGAAGGAA GGAATATCAT TTTTCTCTGT CATTATGTTT 3064 .......... .......... .......... .......... .......... .......... 199 TTTCTTGGCA TTTTCAATCT ATGCAACTGA TTTAATGTTA AATTATGTTT CTTTCCAGTA 3124 || .......... .......... .......... .......... .......... ........TA 201 TGAAAAAGCT GCCTCAGAGC TGAGTAGTCA TGACCCTCCA ATTGTTCTAG CTAAGTATGA 3184 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAAAAAGCT GCCTCAGAGC TGAGTAGTCA TGACCCTCCA ATTGTTCTAG CTAAGTATGA 261 TGCAAATGAT GAAGCCAATA GAGAACTTTC AAAACAGTAC GAGATCCAGG GTTTCCCAAC 3244 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCAAATGAT GAAGCCAATA GAGAACTTTC AAAACAGTAC GAGATCCAGG GTTTCCCAAC 321 TATTAAGATA TTGAGAGATG GAGGAAAGAA AGTTCAAGAC TATAACGGTC CTCGTGAAGC 3304 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATTAAGATA TTGAGAGATG GAGGAAAGAA AGTTCAAGAC TATAACGGTC CTCGTGAAGC 381 AGCTGGTATT GTATCCTACT TGAAGAAACA AGTGGGTCCT GCATCTGCTG AAATCAAGTC 3364 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCTGGTATT GTATCCTACT TGAAGAAACA AGTGGGTCCT GCATCTGCTG AAATCAAGTC 441 GAAGGAAGAT GCCACAAACC TTATTGATGA GAAAAGTATC TTTGTTGTAA GTGGTGATAC 3424 |||||||||| |||||||||| |||||||||| |||||||||| |||||| GAAGGAAGAT GCCACAAACC TTATTGATGA GAAAAGTATC TTTGTT.... .......... 487 TTTTGATGTT TTACTTATCA TTACTGAAGT TTATTTTCAG CATGCCATAG CTTCTTGCTG 3484 .......... .......... .......... .......... .......... .......... 487 TCTAAAATCT TTCTGTTTCT TTAGGTTGGT ATATTTCCAG ACCCCTCCGG AGAGAAATTC 3544 | |||| |||||||||| |||||||||| |||||||||| .......... .......... ....GGTGGT ATATTTCCAG ACCCCTCCGG AGAGAAATTC 523 GAGAACTATT TAACGCTAGC TGAAAAACTG CGAGGCGAGT TCGATTTTGC TCACACTGTT 3604 |||||||| | | |||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGAACTAGT TTACGCTAGC TGAAAAACTG CGAGGCGAGT TCGATTTTGC TCACACTGTT 583 GATGCTAAAC ACCTCCCTC 3623 |||||||||| ||||||||| GATGCTAAAC ACCTCCCTC 602 hqPGS_C06HBa0054K13.1-11+_SGN-E262749+ (1625 1792,2969 2999,3123 3410,3509 3623) ******************************************************************************** EST sequence 14 +strand 596 n (File: SGN-E251945+) 1 AAAAATGGCA AAGAGTGGCA TTTTGGTAAT TGTTTCAGCT CTTGTTGTTC TTGCAGTTTG 61 TGGTGTTTTT GCTGAGGAGA ACGAATATGT GTTGACTTTG GACCATTCTA ACCTCACTGA 121 GACTGTTGCT AAGCACAACT TCATTGTTGT TGAATTCTAT GCACCTTGGT GTGGACACTG 181 TAAGAGTCTT GCTCCTGAGT ATGAAAAAGC TGCCTCAGAG CTGAGTAGTC ATGACCCTCC 241 AATTGTTCTA GCTAAGTATG ATGCAAATGA TGAAGCCAAT AGAGAACTTT CAAAACAGTA 301 CGAGATCCAG GGTTTCCCAA CTATTAAGAT ATTGAGAGAT GGAGGAAAGA AAGTTCAAGA 361 CTATAACGGT CCTCGTGAAG CAGCTGGTAT TGTATCCTAC TTGAAGAAAC AAGTGGGTCC 421 TGCATCTGCT GAAATCAAGT CGAAGGAAGA TGCCACAAAC CTTATTGATG AGAAAAGTAT 481 CTTTGTTGTT GGTATATTTC CAGACCCCTC CGGAGAGAAA TTCGAGAACT ATTTAACGCT 541 AGCTGAAAAA CTGCGAGGCG AGTTCGATTT TGCTCACACT GTTGATGCTA AACACC Predicted gene structure (within gDNA segment 1025 to 4227): Exon 1 1625 1792 ( 168 n); cDNA 1 168 ( 168 n); score: 1.000 Intron 1 1793 2968 (1176 n); Pd: 1.000 (s: 1.00), Pa: 0.997 (s: 0) Exon 2 2969 2999 ( 31 n); cDNA 169 199 ( 31 n); score: 1.000 Intron 2 3000 3122 ( 123 n); Pd: 0.917 (s: 0), Pa: 0.997 (s: 1.00) Exon 3 3123 3410 ( 288 n); cDNA 200 487 ( 288 n); score: 1.000 Intron 3 3411 3508 ( 98 n); Pd: 0.907 (s: 1.00), Pa: 0.997 (s: 1.00) Exon 4 3509 3617 ( 109 n); cDNA 488 596 ( 109 n); score: 1.000 MATCH C06HBa0054K13.1-11+ SGN-E251945+ 1.000 596 1.000 C PGS_C06HBa0054K13.1-11+_SGN-E251945+ (1625 1792,2969 2999,3123 3410,3509 3617) Alignment (genomic DNA sequence = upper lines): AAAAATGGCA AAGAGTGGCA TTTTGGTAAT TGTTTCAGCT CTTGTTGTTC TTGCAGTTTG 1684 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAAATGGCA AAGAGTGGCA TTTTGGTAAT TGTTTCAGCT CTTGTTGTTC TTGCAGTTTG 60 TGGTGTTTTT GCTGAGGAGA ACGAATATGT GTTGACTTTG GACCATTCTA ACCTCACTGA 1744 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGTGTTTTT GCTGAGGAGA ACGAATATGT GTTGACTTTG GACCATTCTA ACCTCACTGA 120 GACTGTTGCT AAGCACAACT TCATTGTTGT TGAATTCTAT GCACCTTGGT AAGTCATCTG 1804 |||||||||| |||||||||| |||||||||| |||||||||| |||||||| GACTGTTGCT AAGCACAACT TCATTGTTGT TGAATTCTAT GCACCTTG.. .......... 168 CTGTTTTTTT TTCTATTTAT TTTCTTGAAA AAAGTTCATT TTTTTTGCTT GTTGAATCTG 1864 .......... .......... .......... .......... .......... .......... 168 TATGTGCAGA ATGTAATGAA TGATTGGATG TAAGGGGTTT TGTTTTTGAT CTGTTTTTTT 1924 .......... .......... .......... .......... .......... .......... 168 TTTGTTATTT TAGTGAATTT TTGCTGTAAT TTTTTTGTTT TCATAAGCTG TGTGAGGAAT 1984 .......... .......... .......... .......... .......... .......... 168 GCATCAAGAT CAGTTCTTTA TGTTAATTTG TCTTAAAGGG TTCATCAAGG ACCCCTTTGG 2044 .......... .......... .......... .......... .......... .......... 168 CTCTACTTTG CTGTTCCTGT TTTTTTTTTT TTTTTGGAGT TTTATCTTTT TGCTGGTTTC 2104 .......... .......... .......... .......... .......... .......... 168 TCTGGCTTTA GAAACTGCAT GTGCAGAAGA TAATCAATGA CTGGTTCTTT TTCTTTTGGG 2164 .......... .......... .......... .......... .......... .......... 168 GAATTTAAGG TTTTGTTATG TAAATGGTTT TTTTTTCTGA TTTTTCTGCT GTAATTTTTT 2224 .......... .......... .......... .......... .......... .......... 168 ATTTTACACA TTGACTTGAA TTTGTCTGAA AGGGTTTTTC AAGGATCCTT TTGTTGATGG 2284 .......... .......... .......... .......... .......... .......... 168 ATGTATTTTG ATTTGTGGAT TGATTGAGGT TTTAAGGCTT TTTCTGTAAA AAGCTTCTTC 2344 .......... .......... .......... .......... .......... .......... 168 TTTTAATTCA TGGTTGATGC TTCTAGAATC TGGATTTGCT TGATGAGTTC TAGGTTATAA 2404 .......... .......... .......... .......... .......... .......... 168 GGTTTCCTCT TTTTATTTAA TTTGCTGCTT GTTTTTTGGT ATTTAAAATC TCTGTGTCCA 2464 .......... .......... .......... .......... .......... .......... 168 GAATTTTACA AAAATATTAA TAAATCTGGA TTTGTCTTTG TGTTCTGTGT TGCTGCAAGT 2524 .......... .......... .......... .......... .......... .......... 168 TAATGGTTTT TCCATTTCTG TGACAGTCTA GTCAATTGGA ATGTAAAATC TGTTTTTCTA 2584 .......... .......... .......... .......... .......... .......... 168 TTTTTGTGTA TGTATTTGGA TCTATGTCAA GAGGTTCCAG TGATCTGTGT TAATAGAAGT 2644 .......... .......... .......... .......... .......... .......... 168 GATTCTTTTA GCCAAATTGT CTTCTTGTTA TGTGTAGTGG TGGATCCAAT GTAATGGTAC 2704 .......... .......... .......... .......... .......... .......... 168 CAGGTTCATC TGAACCTAAT AGTTTCGACT CGGAGCATAA ATTTATGTGT AGGAATTCAC 2764 .......... .......... .......... .......... .......... .......... 168 TAAAATTGCA ATAAATAGTA GACATGAATG ATGTTGATGA CGACATGCTT GAGATGGTTG 2824 .......... .......... .......... .......... .......... .......... 168 TATTAATAGC TTGCATTAGT TTCGATCTTT TCTATGGTAT CAATTCCCAT AGTTATACGT 2884 .......... .......... .......... .......... .......... .......... 168 TGTTGTCGAA ATGTTTATTT AGTTATTCTT TGACATGAAA TTTTTTTACT TTATGAGTAA 2944 .......... .......... .......... .......... .......... .......... 168 CTGATAATAT ACTTGCAATT ACAGGTGTGG ACACTGTAAG AGTCTTGCTC CTGAGGTACA 3004 |||||| |||||||||| |||||||||| ||||| .......... .......... ....GTGTGG ACACTGTAAG AGTCTTGCTC CTGAG..... 199 CTTTCTTCTA TACAGTGCTT AATGAAGGAA GGAATATCAT TTTTCTCTGT CATTATGTTT 3064 .......... .......... .......... .......... .......... .......... 199 TTTCTTGGCA TTTTCAATCT ATGCAACTGA TTTAATGTTA AATTATGTTT CTTTCCAGTA 3124 || .......... .......... .......... .......... .......... ........TA 201 TGAAAAAGCT GCCTCAGAGC TGAGTAGTCA TGACCCTCCA ATTGTTCTAG CTAAGTATGA 3184 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAAAAAGCT GCCTCAGAGC TGAGTAGTCA TGACCCTCCA ATTGTTCTAG CTAAGTATGA 261 TGCAAATGAT GAAGCCAATA GAGAACTTTC AAAACAGTAC GAGATCCAGG GTTTCCCAAC 3244 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCAAATGAT GAAGCCAATA GAGAACTTTC AAAACAGTAC GAGATCCAGG GTTTCCCAAC 321 TATTAAGATA TTGAGAGATG GAGGAAAGAA AGTTCAAGAC TATAACGGTC CTCGTGAAGC 3304 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATTAAGATA TTGAGAGATG GAGGAAAGAA AGTTCAAGAC TATAACGGTC CTCGTGAAGC 381 AGCTGGTATT GTATCCTACT TGAAGAAACA AGTGGGTCCT GCATCTGCTG AAATCAAGTC 3364 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCTGGTATT GTATCCTACT TGAAGAAACA AGTGGGTCCT GCATCTGCTG AAATCAAGTC 441 GAAGGAAGAT GCCACAAACC TTATTGATGA GAAAAGTATC TTTGTTGTAA GTGGTGATAC 3424 |||||||||| |||||||||| |||||||||| |||||||||| |||||| GAAGGAAGAT GCCACAAACC TTATTGATGA GAAAAGTATC TTTGTT.... .......... 487 TTTTGATGTT TTACTTATCA TTACTGAAGT TTATTTTCAG CATGCCATAG CTTCTTGCTG 3484 .......... .......... .......... .......... .......... .......... 487 TCTAAAATCT TTCTGTTTCT TTAGGTTGGT ATATTTCCAG ACCCCTCCGG AGAGAAATTC 3544 |||||| |||||||||| |||||||||| |||||||||| .......... .......... ....GTTGGT ATATTTCCAG ACCCCTCCGG AGAGAAATTC 523 GAGAACTATT TAACGCTAGC TGAAAAACTG CGAGGCGAGT TCGATTTTGC TCACACTGTT 3604 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGAACTATT TAACGCTAGC TGAAAAACTG CGAGGCGAGT TCGATTTTGC TCACACTGTT 583 GATGCTAAAC ACC 3617 |||||||||| ||| GATGCTAAAC ACC 596 hqPGS_C06HBa0054K13.1-11+_SGN-E251945+ (1625 1792,2969 2999,3123 3410,3509 3617) ******************************************************************************** EST sequence 64 +strand 596 n (File: SGN-E324214+) 1 AAAAATGGCA AAGAGTGGCA TTTTGGTAAT TGTTTCAGCT CTTGTTGTTC TTGCAGTTTG 61 TGGTGTTTTT GCTGAGGAGA ACGAATATGT GTTGACTTTG GACCATTCTA ACCTCACTGA 121 GACTGTTGCT AAGCACAACT TCATTGTTGT TGAATTCTAT GCACCTTGGT GTGGACACTG 181 TAAGAGTCTT GCTCCTGAGT ATGAAAAAGC TGCCTCAGAG CTGAGTAGTC ATGACCCTCC 241 AATTGTTCTA GCTAAGTATG ATGCAAATGA TGAAGCCAAT AGAGAACTTT CAAAACAGTA 301 CGAGATCCAG GGTTTCCCAA CTATTAAGAT ATTGAGAGAT GGAGGAAAGA AAGTTCAAGA 361 CTATAACGGT CCTCGTGAAG CAGCTGGTAT TGTATCCTAC TTGAAGAAAC AAGTGGGTCC 421 TGCATCTGCT GAAATCAAGT CGAAAGAAGA TGCCACAAAC CTTATTGATG AGAAAAGTAT 481 CTTTGTTGTT GGTATATTTC CAGACCCCTC CGGAGAGAAA TTCGAGAACT ATTTAACGCT 541 AGCTGAAAAA CTGCGAGGCG AGTTCGATTT TGCTCACACT GTTGATGCTA AACACC Predicted gene structure (within gDNA segment 1025 to 4227): Exon 1 1625 1792 ( 168 n); cDNA 1 168 ( 168 n); score: 1.000 Intron 1 1793 2968 (1176 n); Pd: 1.000 (s: 1.00), Pa: 0.997 (s: 0) Exon 2 2969 2999 ( 31 n); cDNA 169 199 ( 31 n); score: 1.000 Intron 2 3000 3122 ( 123 n); Pd: 0.917 (s: 0), Pa: 0.997 (s: 1.00) Exon 3 3123 3410 ( 288 n); cDNA 200 487 ( 288 n); score: 0.997 Intron 3 3411 3508 ( 98 n); Pd: 0.907 (s: 0.98), Pa: 0.997 (s: 1.00) Exon 4 3509 3617 ( 109 n); cDNA 488 596 ( 109 n); score: 1.000 MATCH C06HBa0054K13.1-11+ SGN-E324214+ 0.998 596 1.000 C PGS_C06HBa0054K13.1-11+_SGN-E324214+ (1625 1792,2969 2999,3123 3410,3509 3617) Alignment (genomic DNA sequence = upper lines): AAAAATGGCA AAGAGTGGCA TTTTGGTAAT TGTTTCAGCT CTTGTTGTTC TTGCAGTTTG 1684 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAAATGGCA AAGAGTGGCA TTTTGGTAAT TGTTTCAGCT CTTGTTGTTC TTGCAGTTTG 60 TGGTGTTTTT GCTGAGGAGA ACGAATATGT GTTGACTTTG GACCATTCTA ACCTCACTGA 1744 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGTGTTTTT GCTGAGGAGA ACGAATATGT GTTGACTTTG GACCATTCTA ACCTCACTGA 120 GACTGTTGCT AAGCACAACT TCATTGTTGT TGAATTCTAT GCACCTTGGT AAGTCATCTG 1804 |||||||||| |||||||||| |||||||||| |||||||||| |||||||| GACTGTTGCT AAGCACAACT TCATTGTTGT TGAATTCTAT GCACCTTG.. .......... 168 CTGTTTTTTT TTCTATTTAT TTTCTTGAAA AAAGTTCATT TTTTTTGCTT GTTGAATCTG 1864 .......... .......... .......... .......... .......... .......... 168 TATGTGCAGA ATGTAATGAA TGATTGGATG TAAGGGGTTT TGTTTTTGAT CTGTTTTTTT 1924 .......... .......... .......... .......... .......... .......... 168 TTTGTTATTT TAGTGAATTT TTGCTGTAAT TTTTTTGTTT TCATAAGCTG TGTGAGGAAT 1984 .......... .......... .......... .......... .......... .......... 168 GCATCAAGAT CAGTTCTTTA TGTTAATTTG TCTTAAAGGG TTCATCAAGG ACCCCTTTGG 2044 .......... .......... .......... .......... .......... .......... 168 CTCTACTTTG CTGTTCCTGT TTTTTTTTTT TTTTTGGAGT TTTATCTTTT TGCTGGTTTC 2104 .......... .......... .......... .......... .......... .......... 168 TCTGGCTTTA GAAACTGCAT GTGCAGAAGA TAATCAATGA CTGGTTCTTT TTCTTTTGGG 2164 .......... .......... .......... .......... .......... .......... 168 GAATTTAAGG TTTTGTTATG TAAATGGTTT TTTTTTCTGA TTTTTCTGCT GTAATTTTTT 2224 .......... .......... .......... .......... .......... .......... 168 ATTTTACACA TTGACTTGAA TTTGTCTGAA AGGGTTTTTC AAGGATCCTT TTGTTGATGG 2284 .......... .......... .......... .......... .......... .......... 168 ATGTATTTTG ATTTGTGGAT TGATTGAGGT TTTAAGGCTT TTTCTGTAAA AAGCTTCTTC 2344 .......... .......... .......... .......... .......... .......... 168 TTTTAATTCA TGGTTGATGC TTCTAGAATC TGGATTTGCT TGATGAGTTC TAGGTTATAA 2404 .......... .......... .......... .......... .......... .......... 168 GGTTTCCTCT TTTTATTTAA TTTGCTGCTT GTTTTTTGGT ATTTAAAATC TCTGTGTCCA 2464 .......... .......... .......... .......... .......... .......... 168 GAATTTTACA AAAATATTAA TAAATCTGGA TTTGTCTTTG TGTTCTGTGT TGCTGCAAGT 2524 .......... .......... .......... .......... .......... .......... 168 TAATGGTTTT TCCATTTCTG TGACAGTCTA GTCAATTGGA ATGTAAAATC TGTTTTTCTA 2584 .......... .......... .......... .......... .......... .......... 168 TTTTTGTGTA TGTATTTGGA TCTATGTCAA GAGGTTCCAG TGATCTGTGT TAATAGAAGT 2644 .......... .......... .......... .......... .......... .......... 168 GATTCTTTTA GCCAAATTGT CTTCTTGTTA TGTGTAGTGG TGGATCCAAT GTAATGGTAC 2704 .......... .......... .......... .......... .......... .......... 168 CAGGTTCATC TGAACCTAAT AGTTTCGACT CGGAGCATAA ATTTATGTGT AGGAATTCAC 2764 .......... .......... .......... .......... .......... .......... 168 TAAAATTGCA ATAAATAGTA GACATGAATG ATGTTGATGA CGACATGCTT GAGATGGTTG 2824 .......... .......... .......... .......... .......... .......... 168 TATTAATAGC TTGCATTAGT TTCGATCTTT TCTATGGTAT CAATTCCCAT AGTTATACGT 2884 .......... .......... .......... .......... .......... .......... 168 TGTTGTCGAA ATGTTTATTT AGTTATTCTT TGACATGAAA TTTTTTTACT TTATGAGTAA 2944 .......... .......... .......... .......... .......... .......... 168 CTGATAATAT ACTTGCAATT ACAGGTGTGG ACACTGTAAG AGTCTTGCTC CTGAGGTACA 3004 |||||| |||||||||| |||||||||| ||||| .......... .......... ....GTGTGG ACACTGTAAG AGTCTTGCTC CTGAG..... 199 CTTTCTTCTA TACAGTGCTT AATGAAGGAA GGAATATCAT TTTTCTCTGT CATTATGTTT 3064 .......... .......... .......... .......... .......... .......... 199 TTTCTTGGCA TTTTCAATCT ATGCAACTGA TTTAATGTTA AATTATGTTT CTTTCCAGTA 3124 || .......... .......... .......... .......... .......... ........TA 201 TGAAAAAGCT GCCTCAGAGC TGAGTAGTCA TGACCCTCCA ATTGTTCTAG CTAAGTATGA 3184 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAAAAAGCT GCCTCAGAGC TGAGTAGTCA TGACCCTCCA ATTGTTCTAG CTAAGTATGA 261 TGCAAATGAT GAAGCCAATA GAGAACTTTC AAAACAGTAC GAGATCCAGG GTTTCCCAAC 3244 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCAAATGAT GAAGCCAATA GAGAACTTTC AAAACAGTAC GAGATCCAGG GTTTCCCAAC 321 TATTAAGATA TTGAGAGATG GAGGAAAGAA AGTTCAAGAC TATAACGGTC CTCGTGAAGC 3304 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATTAAGATA TTGAGAGATG GAGGAAAGAA AGTTCAAGAC TATAACGGTC CTCGTGAAGC 381 AGCTGGTATT GTATCCTACT TGAAGAAACA AGTGGGTCCT GCATCTGCTG AAATCAAGTC 3364 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCTGGTATT GTATCCTACT TGAAGAAACA AGTGGGTCCT GCATCTGCTG AAATCAAGTC 441 GAAGGAAGAT GCCACAAACC TTATTGATGA GAAAAGTATC TTTGTTGTAA GTGGTGATAC 3424 ||| |||||| |||||||||| |||||||||| |||||||||| |||||| GAAAGAAGAT GCCACAAACC TTATTGATGA GAAAAGTATC TTTGTT.... .......... 487 TTTTGATGTT TTACTTATCA TTACTGAAGT TTATTTTCAG CATGCCATAG CTTCTTGCTG 3484 .......... .......... .......... .......... .......... .......... 487 TCTAAAATCT TTCTGTTTCT TTAGGTTGGT ATATTTCCAG ACCCCTCCGG AGAGAAATTC 3544 |||||| |||||||||| |||||||||| |||||||||| .......... .......... ....GTTGGT ATATTTCCAG ACCCCTCCGG AGAGAAATTC 523 GAGAACTATT TAACGCTAGC TGAAAAACTG CGAGGCGAGT TCGATTTTGC TCACACTGTT 3604 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGAACTATT TAACGCTAGC TGAAAAACTG CGAGGCGAGT TCGATTTTGC TCACACTGTT 583 GATGCTAAAC ACC 3617 |||||||||| ||| GATGCTAAAC ACC 596 hqPGS_C06HBa0054K13.1-11+_SGN-E324214+ (1625 1792,2969 2999,3123 3410,3509 3617) ******************************************************************************** EST sequence 99 +strand 594 n (File: SGN-E311273+) 1 AAAAATGGCA AAGAGTGGCA TTTTGGTAAT TGTTTCAGCT CTTGTTGTTC TTGCAGTTTG 61 TGGTGTTTTT GCTGAGGAGA ACGAATATGT GTTGACTTTG GACCATTCTA ACCTCACTGA 121 GACTGTTGCT AAGCACAACT TCATTGTTGT TGAATTCTAT GCACCTTGGT GTGGACACTG 181 TAAGAGTCTT GCTCCTGAGT ATGAAAAAGC TGCCTCAGAG CTGAGTAGTC ATGACCCTCC 241 AATTGTTCTA GCTAAGTATG ATGCAAATGA TGAAGCCAAT AGAGAACTTT CAAAACAGTA 301 CGAGATCCAG GGTTTCCCAA CTATTAAGAT ATTGAGAGAT GGAGGAAAGA AAGTTCAAGA 361 CTATAACGGT CCTCGTGAAG CAGCTGGTAT TGTATCCTAC TTGAAGAAAC AAGTGGGTCC 421 TGCATCTGCT GAAATCAAGT CGAAGGAAGA TGCCACAAAC CTTATTGATG AGAAAAGTAT 481 CTTTGTTGTT GGTATATTTC CAGACCCCTC CGGAGAGAAA TTCGAGAACT ATTTAACGCT 541 AGCTGAAAAA CTGCGAGGCG AGTTCGATTT TGCTCACACT GTTGATGCTA AACA Predicted gene structure (within gDNA segment 1025 to 4225): Exon 1 1625 1792 ( 168 n); cDNA 1 168 ( 168 n); score: 1.000 Intron 1 1793 2968 (1176 n); Pd: 1.000 (s: 1.00), Pa: 0.997 (s: 0) Exon 2 2969 2999 ( 31 n); cDNA 169 199 ( 31 n); score: 1.000 Intron 2 3000 3122 ( 123 n); Pd: 0.917 (s: 0), Pa: 0.997 (s: 1.00) Exon 3 3123 3410 ( 288 n); cDNA 200 487 ( 288 n); score: 1.000 Intron 3 3411 3508 ( 98 n); Pd: 0.907 (s: 1.00), Pa: 0.997 (s: 1.00) Exon 4 3509 3615 ( 107 n); cDNA 488 594 ( 107 n); score: 1.000 MATCH C06HBa0054K13.1-11+ SGN-E311273+ 1.000 594 1.000 C PGS_C06HBa0054K13.1-11+_SGN-E311273+ (1625 1792,2969 2999,3123 3410,3509 3615) Alignment (genomic DNA sequence = upper lines): AAAAATGGCA AAGAGTGGCA TTTTGGTAAT TGTTTCAGCT CTTGTTGTTC TTGCAGTTTG 1684 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAAATGGCA AAGAGTGGCA TTTTGGTAAT TGTTTCAGCT CTTGTTGTTC TTGCAGTTTG 60 TGGTGTTTTT GCTGAGGAGA ACGAATATGT GTTGACTTTG GACCATTCTA ACCTCACTGA 1744 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGTGTTTTT GCTGAGGAGA ACGAATATGT GTTGACTTTG GACCATTCTA ACCTCACTGA 120 GACTGTTGCT AAGCACAACT TCATTGTTGT TGAATTCTAT GCACCTTGGT AAGTCATCTG 1804 |||||||||| |||||||||| |||||||||| |||||||||| |||||||| GACTGTTGCT AAGCACAACT TCATTGTTGT TGAATTCTAT GCACCTTG.. .......... 168 CTGTTTTTTT TTCTATTTAT TTTCTTGAAA AAAGTTCATT TTTTTTGCTT GTTGAATCTG 1864 .......... .......... .......... .......... .......... .......... 168 TATGTGCAGA ATGTAATGAA TGATTGGATG TAAGGGGTTT TGTTTTTGAT CTGTTTTTTT 1924 .......... .......... .......... .......... .......... .......... 168 TTTGTTATTT TAGTGAATTT TTGCTGTAAT TTTTTTGTTT TCATAAGCTG TGTGAGGAAT 1984 .......... .......... .......... .......... .......... .......... 168 GCATCAAGAT CAGTTCTTTA TGTTAATTTG TCTTAAAGGG TTCATCAAGG ACCCCTTTGG 2044 .......... .......... .......... .......... .......... .......... 168 CTCTACTTTG CTGTTCCTGT TTTTTTTTTT TTTTTGGAGT TTTATCTTTT TGCTGGTTTC 2104 .......... .......... .......... .......... .......... .......... 168 TCTGGCTTTA GAAACTGCAT GTGCAGAAGA TAATCAATGA CTGGTTCTTT TTCTTTTGGG 2164 .......... .......... .......... .......... .......... .......... 168 GAATTTAAGG TTTTGTTATG TAAATGGTTT TTTTTTCTGA TTTTTCTGCT GTAATTTTTT 2224 .......... .......... .......... .......... .......... .......... 168 ATTTTACACA TTGACTTGAA TTTGTCTGAA AGGGTTTTTC AAGGATCCTT TTGTTGATGG 2284 .......... .......... .......... .......... .......... .......... 168 ATGTATTTTG ATTTGTGGAT TGATTGAGGT TTTAAGGCTT TTTCTGTAAA AAGCTTCTTC 2344 .......... .......... .......... .......... .......... .......... 168 TTTTAATTCA TGGTTGATGC TTCTAGAATC TGGATTTGCT TGATGAGTTC TAGGTTATAA 2404 .......... .......... .......... .......... .......... .......... 168 GGTTTCCTCT TTTTATTTAA TTTGCTGCTT GTTTTTTGGT ATTTAAAATC TCTGTGTCCA 2464 .......... .......... .......... .......... .......... .......... 168 GAATTTTACA AAAATATTAA TAAATCTGGA TTTGTCTTTG TGTTCTGTGT TGCTGCAAGT 2524 .......... .......... .......... .......... .......... .......... 168 TAATGGTTTT TCCATTTCTG TGACAGTCTA GTCAATTGGA ATGTAAAATC TGTTTTTCTA 2584 .......... .......... .......... .......... .......... .......... 168 TTTTTGTGTA TGTATTTGGA TCTATGTCAA GAGGTTCCAG TGATCTGTGT TAATAGAAGT 2644 .......... .......... .......... .......... .......... .......... 168 GATTCTTTTA GCCAAATTGT CTTCTTGTTA TGTGTAGTGG TGGATCCAAT GTAATGGTAC 2704 .......... .......... .......... .......... .......... .......... 168 CAGGTTCATC TGAACCTAAT AGTTTCGACT CGGAGCATAA ATTTATGTGT AGGAATTCAC 2764 .......... .......... .......... .......... .......... .......... 168 TAAAATTGCA ATAAATAGTA GACATGAATG ATGTTGATGA CGACATGCTT GAGATGGTTG 2824 .......... .......... .......... .......... .......... .......... 168 TATTAATAGC TTGCATTAGT TTCGATCTTT TCTATGGTAT CAATTCCCAT AGTTATACGT 2884 .......... .......... .......... .......... .......... .......... 168 TGTTGTCGAA ATGTTTATTT AGTTATTCTT TGACATGAAA TTTTTTTACT TTATGAGTAA 2944 .......... .......... .......... .......... .......... .......... 168 CTGATAATAT ACTTGCAATT ACAGGTGTGG ACACTGTAAG AGTCTTGCTC CTGAGGTACA 3004 |||||| |||||||||| |||||||||| ||||| .......... .......... ....GTGTGG ACACTGTAAG AGTCTTGCTC CTGAG..... 199 CTTTCTTCTA TACAGTGCTT AATGAAGGAA GGAATATCAT TTTTCTCTGT CATTATGTTT 3064 .......... .......... .......... .......... .......... .......... 199 TTTCTTGGCA TTTTCAATCT ATGCAACTGA TTTAATGTTA AATTATGTTT CTTTCCAGTA 3124 || .......... .......... .......... .......... .......... ........TA 201 TGAAAAAGCT GCCTCAGAGC TGAGTAGTCA TGACCCTCCA ATTGTTCTAG CTAAGTATGA 3184 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAAAAAGCT GCCTCAGAGC TGAGTAGTCA TGACCCTCCA ATTGTTCTAG CTAAGTATGA 261 TGCAAATGAT GAAGCCAATA GAGAACTTTC AAAACAGTAC GAGATCCAGG GTTTCCCAAC 3244 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCAAATGAT GAAGCCAATA GAGAACTTTC AAAACAGTAC GAGATCCAGG GTTTCCCAAC 321 TATTAAGATA TTGAGAGATG GAGGAAAGAA AGTTCAAGAC TATAACGGTC CTCGTGAAGC 3304 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATTAAGATA TTGAGAGATG GAGGAAAGAA AGTTCAAGAC TATAACGGTC CTCGTGAAGC 381 AGCTGGTATT GTATCCTACT TGAAGAAACA AGTGGGTCCT GCATCTGCTG AAATCAAGTC 3364 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCTGGTATT GTATCCTACT TGAAGAAACA AGTGGGTCCT GCATCTGCTG AAATCAAGTC 441 GAAGGAAGAT GCCACAAACC TTATTGATGA GAAAAGTATC TTTGTTGTAA GTGGTGATAC 3424 |||||||||| |||||||||| |||||||||| |||||||||| |||||| GAAGGAAGAT GCCACAAACC TTATTGATGA GAAAAGTATC TTTGTT.... .......... 487 TTTTGATGTT TTACTTATCA TTACTGAAGT TTATTTTCAG CATGCCATAG CTTCTTGCTG 3484 .......... .......... .......... .......... .......... .......... 487 TCTAAAATCT TTCTGTTTCT TTAGGTTGGT ATATTTCCAG ACCCCTCCGG AGAGAAATTC 3544 |||||| |||||||||| |||||||||| |||||||||| .......... .......... ....GTTGGT ATATTTCCAG ACCCCTCCGG AGAGAAATTC 523 GAGAACTATT TAACGCTAGC TGAAAAACTG CGAGGCGAGT TCGATTTTGC TCACACTGTT 3604 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGAACTATT TAACGCTAGC TGAAAAACTG CGAGGCGAGT TCGATTTTGC TCACACTGTT 583 GATGCTAAAC A 3615 |||||||||| | GATGCTAAAC A 594 hqPGS_C06HBa0054K13.1-11+_SGN-E311273+ (1625 1792,2969 2999,3123 3410,3509 3615) ******************************************************************************** EST sequence 19 +strand 588 n (File: SGN-E306480+) 1 AAAAATGGCA AAGAGTGGCA TTTTGGTAAT TGTTTCAGCT CTTGTTGTTC TTGCAGTTTG 61 TGGTGTTTTT GCTGAGGAGA ACGAATATGT GTTGACTTTG GACCATTCTA ACCTCACTGA 121 GACTGTTGCT AAGCACAACT TCATTGTTGT TGAATTCTAT GCACCTTGGT GTGGACACTG 181 TAAGAGTCTT GCTCCTGAGT ATGAAAAAGC TGCCTCAGAG CTGAGTAGTC ATGACCCTCC 241 AATTGTTCTA GCTAAGTATG ATGCAAATGA TGAAGCCAAT AGAGAACTTT CAAAACAGTA 301 CGAGATCCAG GGTTTCCCAA CTATTAAGAT ATTGAGAGAT GGAGGAAAGA AAGTTCAAGA 361 CTATAACGGT CCTCGTGAAG CAGCTGGTAT TGTATCCTAC TTGAAGAAAC AAGTGGGTCC 421 TGCATCTGCT GAAATCAAGT CGAAGGAAGA TGCCACAAAC CTTATTGATG AGAAAAGTAT 481 CTTTGTTGTT GGTATATTTC CAGACCCCTC CGGAGAGAAA TTCGAGAACT ATTTAACGCT 541 AGCTGAAAAA CTGCGAGGCG AGTTCGATTT TGCTCACACT GTTGATGC Predicted gene structure (within gDNA segment 1025 to 4219): Exon 1 1625 1792 ( 168 n); cDNA 1 168 ( 168 n); score: 1.000 Intron 1 1793 2968 (1176 n); Pd: 1.000 (s: 1.00), Pa: 0.997 (s: 0) Exon 2 2969 2999 ( 31 n); cDNA 169 199 ( 31 n); score: 1.000 Intron 2 3000 3122 ( 123 n); Pd: 0.917 (s: 0), Pa: 0.997 (s: 1.00) Exon 3 3123 3410 ( 288 n); cDNA 200 487 ( 288 n); score: 1.000 Intron 3 3411 3508 ( 98 n); Pd: 0.907 (s: 1.00), Pa: 0.997 (s: 1.00) Exon 4 3509 3609 ( 101 n); cDNA 488 588 ( 101 n); score: 1.000 MATCH C06HBa0054K13.1-11+ SGN-E306480+ 1.000 588 1.000 C PGS_C06HBa0054K13.1-11+_SGN-E306480+ (1625 1792,2969 2999,3123 3410,3509 3609) Alignment (genomic DNA sequence = upper lines): AAAAATGGCA AAGAGTGGCA TTTTGGTAAT TGTTTCAGCT CTTGTTGTTC TTGCAGTTTG 1684 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAAATGGCA AAGAGTGGCA TTTTGGTAAT TGTTTCAGCT CTTGTTGTTC TTGCAGTTTG 60 TGGTGTTTTT GCTGAGGAGA ACGAATATGT GTTGACTTTG GACCATTCTA ACCTCACTGA 1744 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGTGTTTTT GCTGAGGAGA ACGAATATGT GTTGACTTTG GACCATTCTA ACCTCACTGA 120 GACTGTTGCT AAGCACAACT TCATTGTTGT TGAATTCTAT GCACCTTGGT AAGTCATCTG 1804 |||||||||| |||||||||| |||||||||| |||||||||| |||||||| GACTGTTGCT AAGCACAACT TCATTGTTGT TGAATTCTAT GCACCTTG.. .......... 168 CTGTTTTTTT TTCTATTTAT TTTCTTGAAA AAAGTTCATT TTTTTTGCTT GTTGAATCTG 1864 .......... .......... .......... .......... .......... .......... 168 TATGTGCAGA ATGTAATGAA TGATTGGATG TAAGGGGTTT TGTTTTTGAT CTGTTTTTTT 1924 .......... .......... .......... .......... .......... .......... 168 TTTGTTATTT TAGTGAATTT TTGCTGTAAT TTTTTTGTTT TCATAAGCTG TGTGAGGAAT 1984 .......... .......... .......... .......... .......... .......... 168 GCATCAAGAT CAGTTCTTTA TGTTAATTTG TCTTAAAGGG TTCATCAAGG ACCCCTTTGG 2044 .......... .......... .......... .......... .......... .......... 168 CTCTACTTTG CTGTTCCTGT TTTTTTTTTT TTTTTGGAGT TTTATCTTTT TGCTGGTTTC 2104 .......... .......... .......... .......... .......... .......... 168 TCTGGCTTTA GAAACTGCAT GTGCAGAAGA TAATCAATGA CTGGTTCTTT TTCTTTTGGG 2164 .......... .......... .......... .......... .......... .......... 168 GAATTTAAGG TTTTGTTATG TAAATGGTTT TTTTTTCTGA TTTTTCTGCT GTAATTTTTT 2224 .......... .......... .......... .......... .......... .......... 168 ATTTTACACA TTGACTTGAA TTTGTCTGAA AGGGTTTTTC AAGGATCCTT TTGTTGATGG 2284 .......... .......... .......... .......... .......... .......... 168 ATGTATTTTG ATTTGTGGAT TGATTGAGGT TTTAAGGCTT TTTCTGTAAA AAGCTTCTTC 2344 .......... .......... .......... .......... .......... .......... 168 TTTTAATTCA TGGTTGATGC TTCTAGAATC TGGATTTGCT TGATGAGTTC TAGGTTATAA 2404 .......... .......... .......... .......... .......... .......... 168 GGTTTCCTCT TTTTATTTAA TTTGCTGCTT GTTTTTTGGT ATTTAAAATC TCTGTGTCCA 2464 .......... .......... .......... .......... .......... .......... 168 GAATTTTACA AAAATATTAA TAAATCTGGA TTTGTCTTTG TGTTCTGTGT TGCTGCAAGT 2524 .......... .......... .......... .......... .......... .......... 168 TAATGGTTTT TCCATTTCTG TGACAGTCTA GTCAATTGGA ATGTAAAATC TGTTTTTCTA 2584 .......... .......... .......... .......... .......... .......... 168 TTTTTGTGTA TGTATTTGGA TCTATGTCAA GAGGTTCCAG TGATCTGTGT TAATAGAAGT 2644 .......... .......... .......... .......... .......... .......... 168 GATTCTTTTA GCCAAATTGT CTTCTTGTTA TGTGTAGTGG TGGATCCAAT GTAATGGTAC 2704 .......... .......... .......... .......... .......... .......... 168 CAGGTTCATC TGAACCTAAT AGTTTCGACT CGGAGCATAA ATTTATGTGT AGGAATTCAC 2764 .......... .......... .......... .......... .......... .......... 168 TAAAATTGCA ATAAATAGTA GACATGAATG ATGTTGATGA CGACATGCTT GAGATGGTTG 2824 .......... .......... .......... .......... .......... .......... 168 TATTAATAGC TTGCATTAGT TTCGATCTTT TCTATGGTAT CAATTCCCAT AGTTATACGT 2884 .......... .......... .......... .......... .......... .......... 168 TGTTGTCGAA ATGTTTATTT AGTTATTCTT TGACATGAAA TTTTTTTACT TTATGAGTAA 2944 .......... .......... .......... .......... .......... .......... 168 CTGATAATAT ACTTGCAATT ACAGGTGTGG ACACTGTAAG AGTCTTGCTC CTGAGGTACA 3004 |||||| |||||||||| |||||||||| ||||| .......... .......... ....GTGTGG ACACTGTAAG AGTCTTGCTC CTGAG..... 199 CTTTCTTCTA TACAGTGCTT AATGAAGGAA GGAATATCAT TTTTCTCTGT CATTATGTTT 3064 .......... .......... .......... .......... .......... .......... 199 TTTCTTGGCA TTTTCAATCT ATGCAACTGA TTTAATGTTA AATTATGTTT CTTTCCAGTA 3124 || .......... .......... .......... .......... .......... ........TA 201 TGAAAAAGCT GCCTCAGAGC TGAGTAGTCA TGACCCTCCA ATTGTTCTAG CTAAGTATGA 3184 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAAAAAGCT GCCTCAGAGC TGAGTAGTCA TGACCCTCCA ATTGTTCTAG CTAAGTATGA 261 TGCAAATGAT GAAGCCAATA GAGAACTTTC AAAACAGTAC GAGATCCAGG GTTTCCCAAC 3244 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCAAATGAT GAAGCCAATA GAGAACTTTC AAAACAGTAC GAGATCCAGG GTTTCCCAAC 321 TATTAAGATA TTGAGAGATG GAGGAAAGAA AGTTCAAGAC TATAACGGTC CTCGTGAAGC 3304 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATTAAGATA TTGAGAGATG GAGGAAAGAA AGTTCAAGAC TATAACGGTC CTCGTGAAGC 381 AGCTGGTATT GTATCCTACT TGAAGAAACA AGTGGGTCCT GCATCTGCTG AAATCAAGTC 3364 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCTGGTATT GTATCCTACT TGAAGAAACA AGTGGGTCCT GCATCTGCTG AAATCAAGTC 441 GAAGGAAGAT GCCACAAACC TTATTGATGA GAAAAGTATC TTTGTTGTAA GTGGTGATAC 3424 |||||||||| |||||||||| |||||||||| |||||||||| |||||| GAAGGAAGAT GCCACAAACC TTATTGATGA GAAAAGTATC TTTGTT.... .......... 487 TTTTGATGTT TTACTTATCA TTACTGAAGT TTATTTTCAG CATGCCATAG CTTCTTGCTG 3484 .......... .......... .......... .......... .......... .......... 487 TCTAAAATCT TTCTGTTTCT TTAGGTTGGT ATATTTCCAG ACCCCTCCGG AGAGAAATTC 3544 |||||| |||||||||| |||||||||| |||||||||| .......... .......... ....GTTGGT ATATTTCCAG ACCCCTCCGG AGAGAAATTC 523 GAGAACTATT TAACGCTAGC TGAAAAACTG CGAGGCGAGT TCGATTTTGC TCACACTGTT 3604 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGAACTATT TAACGCTAGC TGAAAAACTG CGAGGCGAGT TCGATTTTGC TCACACTGTT 583 GATGC 3609 ||||| GATGC 588 hqPGS_C06HBa0054K13.1-11+_SGN-E306480+ (1625 1792,2969 2999,3123 3410,3509 3609) ******************************************************************************** EST sequence 60 +strand 586 n (File: SGN-E251470+) 1 AAAAATGGCA AAGAGTGGCA TTTTGGTAAT TGTTTCAGCT CTTGTTGTTC TTGCAGTTTG 61 TGGTGTTTTT GCTGAGGAGA ACGAATATGT GTTGACTTTG GACCATTCTA ACCTCACTGA 121 GACTGTTGCT AAGCACAACT TCATTGTTGT TGAATTCTAT GCACCTTGGT GTGGACACTG 181 TAAGAGTCTT GCTCCTGAGT ATGAAAAAGC TGCCTCAGAG CTGAGTAGTC ATGACCCTCC 241 AATTGTTCTA GCTAAGTATG ATGCAAATGA TGAAGCCAAT AGAGAACTTT CAAAACAGTA 301 CGAGATCCAG GGTTTCCCAA CTATTAAGAT ATTGAGAGAT GGAGGAAAGA AAGTTCAAGA 361 CTATAACGGT CCTCGTGAAG CAGCTGGTAT TGTATCCTAC TTGAAGAAAC AAGTGGGTCC 421 TGCATCTGCT GAAATCAAGT CGAAGGAAGA TGCCACAAAC CTTATTGATG AGAAAAGTAT 481 CTTTGTTGTT GGTATATTTC CAGACCCCTC CCGAGAGAAA TTCGAGAACT ATTTAACGCT 541 AGCTGAAAAA CTGCGAGGCG AGTTCGATTT TGCTCACACT GTTGAT Predicted gene structure (within gDNA segment 1025 to 4217): Exon 1 1625 1792 ( 168 n); cDNA 1 168 ( 168 n); score: 1.000 Intron 1 1793 2968 (1176 n); Pd: 1.000 (s: 1.00), Pa: 0.997 (s: 0) Exon 2 2969 2999 ( 31 n); cDNA 169 199 ( 31 n); score: 1.000 Intron 2 3000 3122 ( 123 n); Pd: 0.917 (s: 0), Pa: 0.997 (s: 1.00) Exon 3 3123 3410 ( 288 n); cDNA 200 487 ( 288 n); score: 1.000 Intron 3 3411 3508 ( 98 n); Pd: 0.907 (s: 1.00), Pa: 0.997 (s: 0.98) Exon 4 3509 3607 ( 99 n); cDNA 488 586 ( 99 n); score: 0.990 MATCH C06HBa0054K13.1-11+ SGN-E251470+ 0.998 586 1.000 C PGS_C06HBa0054K13.1-11+_SGN-E251470+ (1625 1792,2969 2999,3123 3410,3509 3607) Alignment (genomic DNA sequence = upper lines): AAAAATGGCA AAGAGTGGCA TTTTGGTAAT TGTTTCAGCT CTTGTTGTTC TTGCAGTTTG 1684 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAAATGGCA AAGAGTGGCA TTTTGGTAAT TGTTTCAGCT CTTGTTGTTC TTGCAGTTTG 60 TGGTGTTTTT GCTGAGGAGA ACGAATATGT GTTGACTTTG GACCATTCTA ACCTCACTGA 1744 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGTGTTTTT GCTGAGGAGA ACGAATATGT GTTGACTTTG GACCATTCTA ACCTCACTGA 120 GACTGTTGCT AAGCACAACT TCATTGTTGT TGAATTCTAT GCACCTTGGT AAGTCATCTG 1804 |||||||||| |||||||||| |||||||||| |||||||||| |||||||| GACTGTTGCT AAGCACAACT TCATTGTTGT TGAATTCTAT GCACCTTG.. .......... 168 CTGTTTTTTT TTCTATTTAT TTTCTTGAAA AAAGTTCATT TTTTTTGCTT GTTGAATCTG 1864 .......... .......... .......... .......... .......... .......... 168 TATGTGCAGA ATGTAATGAA TGATTGGATG TAAGGGGTTT TGTTTTTGAT CTGTTTTTTT 1924 .......... .......... .......... .......... .......... .......... 168 TTTGTTATTT TAGTGAATTT TTGCTGTAAT TTTTTTGTTT TCATAAGCTG TGTGAGGAAT 1984 .......... .......... .......... .......... .......... .......... 168 GCATCAAGAT CAGTTCTTTA TGTTAATTTG TCTTAAAGGG TTCATCAAGG ACCCCTTTGG 2044 .......... .......... .......... .......... .......... .......... 168 CTCTACTTTG CTGTTCCTGT TTTTTTTTTT TTTTTGGAGT TTTATCTTTT TGCTGGTTTC 2104 .......... .......... .......... .......... .......... .......... 168 TCTGGCTTTA GAAACTGCAT GTGCAGAAGA TAATCAATGA CTGGTTCTTT TTCTTTTGGG 2164 .......... .......... .......... .......... .......... .......... 168 GAATTTAAGG TTTTGTTATG TAAATGGTTT TTTTTTCTGA TTTTTCTGCT GTAATTTTTT 2224 .......... .......... .......... .......... .......... .......... 168 ATTTTACACA TTGACTTGAA TTTGTCTGAA AGGGTTTTTC AAGGATCCTT TTGTTGATGG 2284 .......... .......... .......... .......... .......... .......... 168 ATGTATTTTG ATTTGTGGAT TGATTGAGGT TTTAAGGCTT TTTCTGTAAA AAGCTTCTTC 2344 .......... .......... .......... .......... .......... .......... 168 TTTTAATTCA TGGTTGATGC TTCTAGAATC TGGATTTGCT TGATGAGTTC TAGGTTATAA 2404 .......... .......... .......... .......... .......... .......... 168 GGTTTCCTCT TTTTATTTAA TTTGCTGCTT GTTTTTTGGT ATTTAAAATC TCTGTGTCCA 2464 .......... .......... .......... .......... .......... .......... 168 GAATTTTACA AAAATATTAA TAAATCTGGA TTTGTCTTTG TGTTCTGTGT TGCTGCAAGT 2524 .......... .......... .......... .......... .......... .......... 168 TAATGGTTTT TCCATTTCTG TGACAGTCTA GTCAATTGGA ATGTAAAATC TGTTTTTCTA 2584 .......... .......... .......... .......... .......... .......... 168 TTTTTGTGTA TGTATTTGGA TCTATGTCAA GAGGTTCCAG TGATCTGTGT TAATAGAAGT 2644 .......... .......... .......... .......... .......... .......... 168 GATTCTTTTA GCCAAATTGT CTTCTTGTTA TGTGTAGTGG TGGATCCAAT GTAATGGTAC 2704 .......... .......... .......... .......... .......... .......... 168 CAGGTTCATC TGAACCTAAT AGTTTCGACT CGGAGCATAA ATTTATGTGT AGGAATTCAC 2764 .......... .......... .......... .......... .......... .......... 168 TAAAATTGCA ATAAATAGTA GACATGAATG ATGTTGATGA CGACATGCTT GAGATGGTTG 2824 .......... .......... .......... .......... .......... .......... 168 TATTAATAGC TTGCATTAGT TTCGATCTTT TCTATGGTAT CAATTCCCAT AGTTATACGT 2884 .......... .......... .......... .......... .......... .......... 168 TGTTGTCGAA ATGTTTATTT AGTTATTCTT TGACATGAAA TTTTTTTACT TTATGAGTAA 2944 .......... .......... .......... .......... .......... .......... 168 CTGATAATAT ACTTGCAATT ACAGGTGTGG ACACTGTAAG AGTCTTGCTC CTGAGGTACA 3004 |||||| |||||||||| |||||||||| ||||| .......... .......... ....GTGTGG ACACTGTAAG AGTCTTGCTC CTGAG..... 199 CTTTCTTCTA TACAGTGCTT AATGAAGGAA GGAATATCAT TTTTCTCTGT CATTATGTTT 3064 .......... .......... .......... .......... .......... .......... 199 TTTCTTGGCA TTTTCAATCT ATGCAACTGA TTTAATGTTA AATTATGTTT CTTTCCAGTA 3124 || .......... .......... .......... .......... .......... ........TA 201 TGAAAAAGCT GCCTCAGAGC TGAGTAGTCA TGACCCTCCA ATTGTTCTAG CTAAGTATGA 3184 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAAAAAGCT GCCTCAGAGC TGAGTAGTCA TGACCCTCCA ATTGTTCTAG CTAAGTATGA 261 TGCAAATGAT GAAGCCAATA GAGAACTTTC AAAACAGTAC GAGATCCAGG GTTTCCCAAC 3244 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCAAATGAT GAAGCCAATA GAGAACTTTC AAAACAGTAC GAGATCCAGG GTTTCCCAAC 321 TATTAAGATA TTGAGAGATG GAGGAAAGAA AGTTCAAGAC TATAACGGTC CTCGTGAAGC 3304 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATTAAGATA TTGAGAGATG GAGGAAAGAA AGTTCAAGAC TATAACGGTC CTCGTGAAGC 381 AGCTGGTATT GTATCCTACT TGAAGAAACA AGTGGGTCCT GCATCTGCTG AAATCAAGTC 3364 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCTGGTATT GTATCCTACT TGAAGAAACA AGTGGGTCCT GCATCTGCTG AAATCAAGTC 441 GAAGGAAGAT GCCACAAACC TTATTGATGA GAAAAGTATC TTTGTTGTAA GTGGTGATAC 3424 |||||||||| |||||||||| |||||||||| |||||||||| |||||| GAAGGAAGAT GCCACAAACC TTATTGATGA GAAAAGTATC TTTGTT.... .......... 487 TTTTGATGTT TTACTTATCA TTACTGAAGT TTATTTTCAG CATGCCATAG CTTCTTGCTG 3484 .......... .......... .......... .......... .......... .......... 487 TCTAAAATCT TTCTGTTTCT TTAGGTTGGT ATATTTCCAG ACCCCTCCGG AGAGAAATTC 3544 |||||| |||||||||| |||||||| | |||||||||| .......... .......... ....GTTGGT ATATTTCCAG ACCCCTCCCG AGAGAAATTC 523 GAGAACTATT TAACGCTAGC TGAAAAACTG CGAGGCGAGT TCGATTTTGC TCACACTGTT 3604 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGAACTATT TAACGCTAGC TGAAAAACTG CGAGGCGAGT TCGATTTTGC TCACACTGTT 583 GAT 3607 ||| GAT 586 hqPGS_C06HBa0054K13.1-11+_SGN-E251470+ (1625 1792,2969 2999,3123 3410,3509 3607) ******************************************************************************** EST sequence 29 +strand 553 n (File: SGN-E316387+) 1 AAAAATGGCA AAGAGTGGCA TTTTGGTAAT TGTTTCAGCT CTTGTTGTTC TTGCAGTTTG 61 TGGTGTTTTT GCTGAGGAGA ACGAATATGT GTTGACTTTG GACCATTCTA ACCTCACTGA 121 GACTGTTGCT AAGCACAACT TCATTGTTGT TGAATTCTAT GCACCTTGGT GTGGACACTG 181 TAAGAGTCTT GCTCCTGAGT ATGAAAAAGC TGCCTCAGAG CTGAGTAGTC ATGACCCTCC 241 AATTGTTCTA GCTAAGTATG ATGCAAATGA TGAAGCCAAT AGAGAACTTT CAAAACAGTA 301 CGAGATCCAG GGTTTCCCAA CTATTAAGAT ATTGAGAGAT GGAGGAAAGA AAGTTCAAGA 361 CTATAACGGT CCTCGTGAAG CAGCTGGTAT TGTATCCTAC TTGAAGAAAC AAGTGGGTCC 421 TGCATCTGCT GAAATCAAGT CGAAGGAAGA TGCCACAAAC CTTATTGATG AGAAAAGTAT 481 CTTTGTTGTT GGTATATTTC CAGACCCCTC CGGAGAGAAA TTCGAGAACT ATTTAACGCT 541 AGCTGAAAAA CTG Predicted gene structure (within gDNA segment 1025 to 4184): Exon 1 1625 1792 ( 168 n); cDNA 1 168 ( 168 n); score: 1.000 Intron 1 1793 2968 (1176 n); Pd: 1.000 (s: 1.00), Pa: 0.997 (s: 0) Exon 2 2969 2999 ( 31 n); cDNA 169 199 ( 31 n); score: 1.000 Intron 2 3000 3122 ( 123 n); Pd: 0.917 (s: 0), Pa: 0.997 (s: 1.00) Exon 3 3123 3410 ( 288 n); cDNA 200 487 ( 288 n); score: 1.000 Intron 3 3411 3508 ( 98 n); Pd: 0.907 (s: 1.00), Pa: 0.997 (s: 1.00) Exon 4 3509 3574 ( 66 n); cDNA 488 553 ( 66 n); score: 1.000 MATCH C06HBa0054K13.1-11+ SGN-E316387+ 1.000 553 1.000 C PGS_C06HBa0054K13.1-11+_SGN-E316387+ (1625 1792,2969 2999,3123 3410,3509 3574) Alignment (genomic DNA sequence = upper lines): AAAAATGGCA AAGAGTGGCA TTTTGGTAAT TGTTTCAGCT CTTGTTGTTC TTGCAGTTTG 1684 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAAATGGCA AAGAGTGGCA TTTTGGTAAT TGTTTCAGCT CTTGTTGTTC TTGCAGTTTG 60 TGGTGTTTTT GCTGAGGAGA ACGAATATGT GTTGACTTTG GACCATTCTA ACCTCACTGA 1744 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGTGTTTTT GCTGAGGAGA ACGAATATGT GTTGACTTTG GACCATTCTA ACCTCACTGA 120 GACTGTTGCT AAGCACAACT TCATTGTTGT TGAATTCTAT GCACCTTGGT AAGTCATCTG 1804 |||||||||| |||||||||| |||||||||| |||||||||| |||||||| GACTGTTGCT AAGCACAACT TCATTGTTGT TGAATTCTAT GCACCTTG.. .......... 168 CTGTTTTTTT TTCTATTTAT TTTCTTGAAA AAAGTTCATT TTTTTTGCTT GTTGAATCTG 1864 .......... .......... .......... .......... .......... .......... 168 TATGTGCAGA ATGTAATGAA TGATTGGATG TAAGGGGTTT TGTTTTTGAT CTGTTTTTTT 1924 .......... .......... .......... .......... .......... .......... 168 TTTGTTATTT TAGTGAATTT TTGCTGTAAT TTTTTTGTTT TCATAAGCTG TGTGAGGAAT 1984 .......... .......... .......... .......... .......... .......... 168 GCATCAAGAT CAGTTCTTTA TGTTAATTTG TCTTAAAGGG TTCATCAAGG ACCCCTTTGG 2044 .......... .......... .......... .......... .......... .......... 168 CTCTACTTTG CTGTTCCTGT TTTTTTTTTT TTTTTGGAGT TTTATCTTTT TGCTGGTTTC 2104 .......... .......... .......... .......... .......... .......... 168 TCTGGCTTTA GAAACTGCAT GTGCAGAAGA TAATCAATGA CTGGTTCTTT TTCTTTTGGG 2164 .......... .......... .......... .......... .......... .......... 168 GAATTTAAGG TTTTGTTATG TAAATGGTTT TTTTTTCTGA TTTTTCTGCT GTAATTTTTT 2224 .......... .......... .......... .......... .......... .......... 168 ATTTTACACA TTGACTTGAA TTTGTCTGAA AGGGTTTTTC AAGGATCCTT TTGTTGATGG 2284 .......... .......... .......... .......... .......... .......... 168 ATGTATTTTG ATTTGTGGAT TGATTGAGGT TTTAAGGCTT TTTCTGTAAA AAGCTTCTTC 2344 .......... .......... .......... .......... .......... .......... 168 TTTTAATTCA TGGTTGATGC TTCTAGAATC TGGATTTGCT TGATGAGTTC TAGGTTATAA 2404 .......... .......... .......... .......... .......... .......... 168 GGTTTCCTCT TTTTATTTAA TTTGCTGCTT GTTTTTTGGT ATTTAAAATC TCTGTGTCCA 2464 .......... .......... .......... .......... .......... .......... 168 GAATTTTACA AAAATATTAA TAAATCTGGA TTTGTCTTTG TGTTCTGTGT TGCTGCAAGT 2524 .......... .......... .......... .......... .......... .......... 168 TAATGGTTTT TCCATTTCTG TGACAGTCTA GTCAATTGGA ATGTAAAATC TGTTTTTCTA 2584 .......... .......... .......... .......... .......... .......... 168 TTTTTGTGTA TGTATTTGGA TCTATGTCAA GAGGTTCCAG TGATCTGTGT TAATAGAAGT 2644 .......... .......... .......... .......... .......... .......... 168 GATTCTTTTA GCCAAATTGT CTTCTTGTTA TGTGTAGTGG TGGATCCAAT GTAATGGTAC 2704 .......... .......... .......... .......... .......... .......... 168 CAGGTTCATC TGAACCTAAT AGTTTCGACT CGGAGCATAA ATTTATGTGT AGGAATTCAC 2764 .......... .......... .......... .......... .......... .......... 168 TAAAATTGCA ATAAATAGTA GACATGAATG ATGTTGATGA CGACATGCTT GAGATGGTTG 2824 .......... .......... .......... .......... .......... .......... 168 TATTAATAGC TTGCATTAGT TTCGATCTTT TCTATGGTAT CAATTCCCAT AGTTATACGT 2884 .......... .......... .......... .......... .......... .......... 168 TGTTGTCGAA ATGTTTATTT AGTTATTCTT TGACATGAAA TTTTTTTACT TTATGAGTAA 2944 .......... .......... .......... .......... .......... .......... 168 CTGATAATAT ACTTGCAATT ACAGGTGTGG ACACTGTAAG AGTCTTGCTC CTGAGGTACA 3004 |||||| |||||||||| |||||||||| ||||| .......... .......... ....GTGTGG ACACTGTAAG AGTCTTGCTC CTGAG..... 199 CTTTCTTCTA TACAGTGCTT AATGAAGGAA GGAATATCAT TTTTCTCTGT CATTATGTTT 3064 .......... .......... .......... .......... .......... .......... 199 TTTCTTGGCA TTTTCAATCT ATGCAACTGA TTTAATGTTA AATTATGTTT CTTTCCAGTA 3124 || .......... .......... .......... .......... .......... ........TA 201 TGAAAAAGCT GCCTCAGAGC TGAGTAGTCA TGACCCTCCA ATTGTTCTAG CTAAGTATGA 3184 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAAAAAGCT GCCTCAGAGC TGAGTAGTCA TGACCCTCCA ATTGTTCTAG CTAAGTATGA 261 TGCAAATGAT GAAGCCAATA GAGAACTTTC AAAACAGTAC GAGATCCAGG GTTTCCCAAC 3244 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCAAATGAT GAAGCCAATA GAGAACTTTC AAAACAGTAC GAGATCCAGG GTTTCCCAAC 321 TATTAAGATA TTGAGAGATG GAGGAAAGAA AGTTCAAGAC TATAACGGTC CTCGTGAAGC 3304 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATTAAGATA TTGAGAGATG GAGGAAAGAA AGTTCAAGAC TATAACGGTC CTCGTGAAGC 381 AGCTGGTATT GTATCCTACT TGAAGAAACA AGTGGGTCCT GCATCTGCTG AAATCAAGTC 3364 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCTGGTATT GTATCCTACT TGAAGAAACA AGTGGGTCCT GCATCTGCTG AAATCAAGTC 441 GAAGGAAGAT GCCACAAACC TTATTGATGA GAAAAGTATC TTTGTTGTAA GTGGTGATAC 3424 |||||||||| |||||||||| |||||||||| |||||||||| |||||| GAAGGAAGAT GCCACAAACC TTATTGATGA GAAAAGTATC TTTGTT.... .......... 487 TTTTGATGTT TTACTTATCA TTACTGAAGT TTATTTTCAG CATGCCATAG CTTCTTGCTG 3484 .......... .......... .......... .......... .......... .......... 487 TCTAAAATCT TTCTGTTTCT TTAGGTTGGT ATATTTCCAG ACCCCTCCGG AGAGAAATTC 3544 |||||| |||||||||| |||||||||| |||||||||| .......... .......... ....GTTGGT ATATTTCCAG ACCCCTCCGG AGAGAAATTC 523 GAGAACTATT TAACGCTAGC TGAAAAACTG 3574 |||||||||| |||||||||| |||||||||| GAGAACTATT TAACGCTAGC TGAAAAACTG 553 hqPGS_C06HBa0054K13.1-11+_SGN-E316387+ (1625 1792,2969 2999,3123 3410,3509 3574) ******************************************************************************** EST sequence 4 +strand 552 n (File: SGN-E325784+) 1 AAAAATGGCA AAGAGTGGCA TTTTGGTAAT TGTTTCAGCT CTTGTTGTTC TTGCAGTTTG 61 TGGTGTTTTT GCTGAGGAGA ACGAATATGT GTTGACTTTG GACCATTCTA ACCTCACTGA 121 GACTGTTGCT AAGCACAACT TCATTGTTGT TGAATTCTAT GCACCTTGGT GTGGACACTG 181 TAAGAGTCTT GCTCCTGAGT ATGAAAAAGC TGCCTCAGAG CTGAGTAGTC ATGACCCTCC 241 AATTGTTCTA GCTAAGTATG ATGCAAATGA TGAAGCCAAT AGAGAACTTT CAAAACAGTA 301 CGAGATCCAG GGTTTCCCAA CTATTAAGAT ATTGAGAGAT GGAGGAAAGA AAGTTCAAGA 361 CTATAACGGT CCTCGTGAAG CAGCTGGTAT TGTATCCTAC TTGAAGAAAC AAGTGGGTCC 421 TGCATCTGCT GAAATCAAGT CGAAGGAAGA TGCCACAAAC CTTATTGATG AGAAAAGTAT 481 CTTTGTTGTT GGTATATTTC CAGACCCCTC CGGAGAGAAA TTCGAGAACT ATTTAACGCT 541 AGCTGAAAAA CT Predicted gene structure (within gDNA segment 1025 to 4183): Exon 1 1625 1792 ( 168 n); cDNA 1 168 ( 168 n); score: 1.000 Intron 1 1793 2968 (1176 n); Pd: 1.000 (s: 1.00), Pa: 0.997 (s: 0) Exon 2 2969 2999 ( 31 n); cDNA 169 199 ( 31 n); score: 1.000 Intron 2 3000 3122 ( 123 n); Pd: 0.917 (s: 0), Pa: 0.997 (s: 1.00) Exon 3 3123 3410 ( 288 n); cDNA 200 487 ( 288 n); score: 1.000 Intron 3 3411 3508 ( 98 n); Pd: 0.907 (s: 1.00), Pa: 0.997 (s: 1.00) Exon 4 3509 3573 ( 65 n); cDNA 488 552 ( 65 n); score: 1.000 MATCH C06HBa0054K13.1-11+ SGN-E325784+ 1.000 552 1.000 C PGS_C06HBa0054K13.1-11+_SGN-E325784+ (1625 1792,2969 2999,3123 3410,3509 3573) Alignment (genomic DNA sequence = upper lines): AAAAATGGCA AAGAGTGGCA TTTTGGTAAT TGTTTCAGCT CTTGTTGTTC TTGCAGTTTG 1684 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAAATGGCA AAGAGTGGCA TTTTGGTAAT TGTTTCAGCT CTTGTTGTTC TTGCAGTTTG 60 TGGTGTTTTT GCTGAGGAGA ACGAATATGT GTTGACTTTG GACCATTCTA ACCTCACTGA 1744 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGTGTTTTT GCTGAGGAGA ACGAATATGT GTTGACTTTG GACCATTCTA ACCTCACTGA 120 GACTGTTGCT AAGCACAACT TCATTGTTGT TGAATTCTAT GCACCTTGGT AAGTCATCTG 1804 |||||||||| |||||||||| |||||||||| |||||||||| |||||||| GACTGTTGCT AAGCACAACT TCATTGTTGT TGAATTCTAT GCACCTTG.. .......... 168 CTGTTTTTTT TTCTATTTAT TTTCTTGAAA AAAGTTCATT TTTTTTGCTT GTTGAATCTG 1864 .......... .......... .......... .......... .......... .......... 168 TATGTGCAGA ATGTAATGAA TGATTGGATG TAAGGGGTTT TGTTTTTGAT CTGTTTTTTT 1924 .......... .......... .......... .......... .......... .......... 168 TTTGTTATTT TAGTGAATTT TTGCTGTAAT TTTTTTGTTT TCATAAGCTG TGTGAGGAAT 1984 .......... .......... .......... .......... .......... .......... 168 GCATCAAGAT CAGTTCTTTA TGTTAATTTG TCTTAAAGGG TTCATCAAGG ACCCCTTTGG 2044 .......... .......... .......... .......... .......... .......... 168 CTCTACTTTG CTGTTCCTGT TTTTTTTTTT TTTTTGGAGT TTTATCTTTT TGCTGGTTTC 2104 .......... .......... .......... .......... .......... .......... 168 TCTGGCTTTA GAAACTGCAT GTGCAGAAGA TAATCAATGA CTGGTTCTTT TTCTTTTGGG 2164 .......... .......... .......... .......... .......... .......... 168 GAATTTAAGG TTTTGTTATG TAAATGGTTT TTTTTTCTGA TTTTTCTGCT GTAATTTTTT 2224 .......... .......... .......... .......... .......... .......... 168 ATTTTACACA TTGACTTGAA TTTGTCTGAA AGGGTTTTTC AAGGATCCTT TTGTTGATGG 2284 .......... .......... .......... .......... .......... .......... 168 ATGTATTTTG ATTTGTGGAT TGATTGAGGT TTTAAGGCTT TTTCTGTAAA AAGCTTCTTC 2344 .......... .......... .......... .......... .......... .......... 168 TTTTAATTCA TGGTTGATGC TTCTAGAATC TGGATTTGCT TGATGAGTTC TAGGTTATAA 2404 .......... .......... .......... .......... .......... .......... 168 GGTTTCCTCT TTTTATTTAA TTTGCTGCTT GTTTTTTGGT ATTTAAAATC TCTGTGTCCA 2464 .......... .......... .......... .......... .......... .......... 168 GAATTTTACA AAAATATTAA TAAATCTGGA TTTGTCTTTG TGTTCTGTGT TGCTGCAAGT 2524 .......... .......... .......... .......... .......... .......... 168 TAATGGTTTT TCCATTTCTG TGACAGTCTA GTCAATTGGA ATGTAAAATC TGTTTTTCTA 2584 .......... .......... .......... .......... .......... .......... 168 TTTTTGTGTA TGTATTTGGA TCTATGTCAA GAGGTTCCAG TGATCTGTGT TAATAGAAGT 2644 .......... .......... .......... .......... .......... .......... 168 GATTCTTTTA GCCAAATTGT CTTCTTGTTA TGTGTAGTGG TGGATCCAAT GTAATGGTAC 2704 .......... .......... .......... .......... .......... .......... 168 CAGGTTCATC TGAACCTAAT AGTTTCGACT CGGAGCATAA ATTTATGTGT AGGAATTCAC 2764 .......... .......... .......... .......... .......... .......... 168 TAAAATTGCA ATAAATAGTA GACATGAATG ATGTTGATGA CGACATGCTT GAGATGGTTG 2824 .......... .......... .......... .......... .......... .......... 168 TATTAATAGC TTGCATTAGT TTCGATCTTT TCTATGGTAT CAATTCCCAT AGTTATACGT 2884 .......... .......... .......... .......... .......... .......... 168 TGTTGTCGAA ATGTTTATTT AGTTATTCTT TGACATGAAA TTTTTTTACT TTATGAGTAA 2944 .......... .......... .......... .......... .......... .......... 168 CTGATAATAT ACTTGCAATT ACAGGTGTGG ACACTGTAAG AGTCTTGCTC CTGAGGTACA 3004 |||||| |||||||||| |||||||||| ||||| .......... .......... ....GTGTGG ACACTGTAAG AGTCTTGCTC CTGAG..... 199 CTTTCTTCTA TACAGTGCTT AATGAAGGAA GGAATATCAT TTTTCTCTGT CATTATGTTT 3064 .......... .......... .......... .......... .......... .......... 199 TTTCTTGGCA TTTTCAATCT ATGCAACTGA TTTAATGTTA AATTATGTTT CTTTCCAGTA 3124 || .......... .......... .......... .......... .......... ........TA 201 TGAAAAAGCT GCCTCAGAGC TGAGTAGTCA TGACCCTCCA ATTGTTCTAG CTAAGTATGA 3184 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAAAAAGCT GCCTCAGAGC TGAGTAGTCA TGACCCTCCA ATTGTTCTAG CTAAGTATGA 261 TGCAAATGAT GAAGCCAATA GAGAACTTTC AAAACAGTAC GAGATCCAGG GTTTCCCAAC 3244 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCAAATGAT GAAGCCAATA GAGAACTTTC AAAACAGTAC GAGATCCAGG GTTTCCCAAC 321 TATTAAGATA TTGAGAGATG GAGGAAAGAA AGTTCAAGAC TATAACGGTC CTCGTGAAGC 3304 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATTAAGATA TTGAGAGATG GAGGAAAGAA AGTTCAAGAC TATAACGGTC CTCGTGAAGC 381 AGCTGGTATT GTATCCTACT TGAAGAAACA AGTGGGTCCT GCATCTGCTG AAATCAAGTC 3364 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCTGGTATT GTATCCTACT TGAAGAAACA AGTGGGTCCT GCATCTGCTG AAATCAAGTC 441 GAAGGAAGAT GCCACAAACC TTATTGATGA GAAAAGTATC TTTGTTGTAA GTGGTGATAC 3424 |||||||||| |||||||||| |||||||||| |||||||||| |||||| GAAGGAAGAT GCCACAAACC TTATTGATGA GAAAAGTATC TTTGTT.... .......... 487 TTTTGATGTT TTACTTATCA TTACTGAAGT TTATTTTCAG CATGCCATAG CTTCTTGCTG 3484 .......... .......... .......... .......... .......... .......... 487 TCTAAAATCT TTCTGTTTCT TTAGGTTGGT ATATTTCCAG ACCCCTCCGG AGAGAAATTC 3544 |||||| |||||||||| |||||||||| |||||||||| .......... .......... ....GTTGGT ATATTTCCAG ACCCCTCCGG AGAGAAATTC 523 GAGAACTATT TAACGCTAGC TGAAAAACT 3573 |||||||||| |||||||||| ||||||||| GAGAACTATT TAACGCTAGC TGAAAAACT 552 hqPGS_C06HBa0054K13.1-11+_SGN-E325784+ (1625 1792,2969 2999,3123 3410,3509 3573) ******************************************************************************** EST sequence 28 +strand 539 n (File: SGN-E272630+) 1 AAAAATGGCA AAGAGTGGCA TTTTGGTAAT TGTTTCAGCT CTTGTTGTTC TTGCAGTTTG 61 TGGTGTTTTT GCTGAGGAGA ACGAATATGT GTTGACTTTG GACCATTCTA ACCTCACTGA 121 GACTGTTGCT AAGCACAACT TCATTGTTGT TGAATTCTAT GCACCTTGGT GTGGACACTG 181 TAAGAGTCTT GCTCCTGAGT ATGAAAAAGC TGCCTCAGAG CTGAGTAGTC ATGACCCTCC 241 AATTGTTCTA GCTAAGTATG ATGCAAATGA TGAAGCCAAT AGAGAACTTT CAAAACAGTA 301 CGAGATCCAG GGTTTCCCAA CTATTAAGAT ATTGAGAGAT GGAGGAAAGA AAGTTCAAGA 361 CTATAACGGT CCTCGTGAAG CAGCTGGTAT TGTATCCTAC TTGAAGAAAC AAGTGGGTCC 421 TGCATCTGCT GAAATCAAGT CGAAGGAAGA TGCCACAAAC CTTATTGATG AGAAAAGTAT 481 CTTTGTTGTT GGTATATTTC CAGACCCCTC CGGAGAGAAA TTCGAGAACT ATTTAACGC Predicted gene structure (within gDNA segment 1025 to 4170): Exon 1 1625 1792 ( 168 n); cDNA 1 168 ( 168 n); score: 1.000 Intron 1 1793 2968 (1176 n); Pd: 1.000 (s: 1.00), Pa: 0.997 (s: 0) Exon 2 2969 2999 ( 31 n); cDNA 169 199 ( 31 n); score: 1.000 Intron 2 3000 3122 ( 123 n); Pd: 0.917 (s: 0), Pa: 0.997 (s: 1.00) Exon 3 3123 3410 ( 288 n); cDNA 200 487 ( 288 n); score: 1.000 Intron 3 3411 3508 ( 98 n); Pd: 0.907 (s: 1.00), Pa: 0.997 (s: 1.00) Exon 4 3509 3560 ( 52 n); cDNA 488 539 ( 52 n); score: 1.000 MATCH C06HBa0054K13.1-11+ SGN-E272630+ 1.000 539 1.000 C PGS_C06HBa0054K13.1-11+_SGN-E272630+ (1625 1792,2969 2999,3123 3410,3509 3560) Alignment (genomic DNA sequence = upper lines): AAAAATGGCA AAGAGTGGCA TTTTGGTAAT TGTTTCAGCT CTTGTTGTTC TTGCAGTTTG 1684 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAAATGGCA AAGAGTGGCA TTTTGGTAAT TGTTTCAGCT CTTGTTGTTC TTGCAGTTTG 60 TGGTGTTTTT GCTGAGGAGA ACGAATATGT GTTGACTTTG GACCATTCTA ACCTCACTGA 1744 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGTGTTTTT GCTGAGGAGA ACGAATATGT GTTGACTTTG GACCATTCTA ACCTCACTGA 120 GACTGTTGCT AAGCACAACT TCATTGTTGT TGAATTCTAT GCACCTTGGT AAGTCATCTG 1804 |||||||||| |||||||||| |||||||||| |||||||||| |||||||| GACTGTTGCT AAGCACAACT TCATTGTTGT TGAATTCTAT GCACCTTG.. .......... 168 CTGTTTTTTT TTCTATTTAT TTTCTTGAAA AAAGTTCATT TTTTTTGCTT GTTGAATCTG 1864 .......... .......... .......... .......... .......... .......... 168 TATGTGCAGA ATGTAATGAA TGATTGGATG TAAGGGGTTT TGTTTTTGAT CTGTTTTTTT 1924 .......... .......... .......... .......... .......... .......... 168 TTTGTTATTT TAGTGAATTT TTGCTGTAAT TTTTTTGTTT TCATAAGCTG TGTGAGGAAT 1984 .......... .......... .......... .......... .......... .......... 168 GCATCAAGAT CAGTTCTTTA TGTTAATTTG TCTTAAAGGG TTCATCAAGG ACCCCTTTGG 2044 .......... .......... .......... .......... .......... .......... 168 CTCTACTTTG CTGTTCCTGT TTTTTTTTTT TTTTTGGAGT TTTATCTTTT TGCTGGTTTC 2104 .......... .......... .......... .......... .......... .......... 168 TCTGGCTTTA GAAACTGCAT GTGCAGAAGA TAATCAATGA CTGGTTCTTT TTCTTTTGGG 2164 .......... .......... .......... .......... .......... .......... 168 GAATTTAAGG TTTTGTTATG TAAATGGTTT TTTTTTCTGA TTTTTCTGCT GTAATTTTTT 2224 .......... .......... .......... .......... .......... .......... 168 ATTTTACACA TTGACTTGAA TTTGTCTGAA AGGGTTTTTC AAGGATCCTT TTGTTGATGG 2284 .......... .......... .......... .......... .......... .......... 168 ATGTATTTTG ATTTGTGGAT TGATTGAGGT TTTAAGGCTT TTTCTGTAAA AAGCTTCTTC 2344 .......... .......... .......... .......... .......... .......... 168 TTTTAATTCA TGGTTGATGC TTCTAGAATC TGGATTTGCT TGATGAGTTC TAGGTTATAA 2404 .......... .......... .......... .......... .......... .......... 168 GGTTTCCTCT TTTTATTTAA TTTGCTGCTT GTTTTTTGGT ATTTAAAATC TCTGTGTCCA 2464 .......... .......... .......... .......... .......... .......... 168 GAATTTTACA AAAATATTAA TAAATCTGGA TTTGTCTTTG TGTTCTGTGT TGCTGCAAGT 2524 .......... .......... .......... .......... .......... .......... 168 TAATGGTTTT TCCATTTCTG TGACAGTCTA GTCAATTGGA ATGTAAAATC TGTTTTTCTA 2584 .......... .......... .......... .......... .......... .......... 168 TTTTTGTGTA TGTATTTGGA TCTATGTCAA GAGGTTCCAG TGATCTGTGT TAATAGAAGT 2644 .......... .......... .......... .......... .......... .......... 168 GATTCTTTTA GCCAAATTGT CTTCTTGTTA TGTGTAGTGG TGGATCCAAT GTAATGGTAC 2704 .......... .......... .......... .......... .......... .......... 168 CAGGTTCATC TGAACCTAAT AGTTTCGACT CGGAGCATAA ATTTATGTGT AGGAATTCAC 2764 .......... .......... .......... .......... .......... .......... 168 TAAAATTGCA ATAAATAGTA GACATGAATG ATGTTGATGA CGACATGCTT GAGATGGTTG 2824 .......... .......... .......... .......... .......... .......... 168 TATTAATAGC TTGCATTAGT TTCGATCTTT TCTATGGTAT CAATTCCCAT AGTTATACGT 2884 .......... .......... .......... .......... .......... .......... 168 TGTTGTCGAA ATGTTTATTT AGTTATTCTT TGACATGAAA TTTTTTTACT TTATGAGTAA 2944 .......... .......... .......... .......... .......... .......... 168 CTGATAATAT ACTTGCAATT ACAGGTGTGG ACACTGTAAG AGTCTTGCTC CTGAGGTACA 3004 |||||| |||||||||| |||||||||| ||||| .......... .......... ....GTGTGG ACACTGTAAG AGTCTTGCTC CTGAG..... 199 CTTTCTTCTA TACAGTGCTT AATGAAGGAA GGAATATCAT TTTTCTCTGT CATTATGTTT 3064 .......... .......... .......... .......... .......... .......... 199 TTTCTTGGCA TTTTCAATCT ATGCAACTGA TTTAATGTTA AATTATGTTT CTTTCCAGTA 3124 || .......... .......... .......... .......... .......... ........TA 201 TGAAAAAGCT GCCTCAGAGC TGAGTAGTCA TGACCCTCCA ATTGTTCTAG CTAAGTATGA 3184 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAAAAAGCT GCCTCAGAGC TGAGTAGTCA TGACCCTCCA ATTGTTCTAG CTAAGTATGA 261 TGCAAATGAT GAAGCCAATA GAGAACTTTC AAAACAGTAC GAGATCCAGG GTTTCCCAAC 3244 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCAAATGAT GAAGCCAATA GAGAACTTTC AAAACAGTAC GAGATCCAGG GTTTCCCAAC 321 TATTAAGATA TTGAGAGATG GAGGAAAGAA AGTTCAAGAC TATAACGGTC CTCGTGAAGC 3304 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATTAAGATA TTGAGAGATG GAGGAAAGAA AGTTCAAGAC TATAACGGTC CTCGTGAAGC 381 AGCTGGTATT GTATCCTACT TGAAGAAACA AGTGGGTCCT GCATCTGCTG AAATCAAGTC 3364 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCTGGTATT GTATCCTACT TGAAGAAACA AGTGGGTCCT GCATCTGCTG AAATCAAGTC 441 GAAGGAAGAT GCCACAAACC TTATTGATGA GAAAAGTATC TTTGTTGTAA GTGGTGATAC 3424 |||||||||| |||||||||| |||||||||| |||||||||| |||||| GAAGGAAGAT GCCACAAACC TTATTGATGA GAAAAGTATC TTTGTT.... .......... 487 TTTTGATGTT TTACTTATCA TTACTGAAGT TTATTTTCAG CATGCCATAG CTTCTTGCTG 3484 .......... .......... .......... .......... .......... .......... 487 TCTAAAATCT TTCTGTTTCT TTAGGTTGGT ATATTTCCAG ACCCCTCCGG AGAGAAATTC 3544 |||||| |||||||||| |||||||||| |||||||||| .......... .......... ....GTTGGT ATATTTCCAG ACCCCTCCGG AGAGAAATTC 523 GAGAACTATT TAACGC 3560 |||||||||| |||||| GAGAACTATT TAACGC 539 hqPGS_C06HBa0054K13.1-11+_SGN-E272630+ (1625 1792,2969 2999,3123 3410,3509 3560) ******************************************************************************** EST sequence 118 +strand 539 n (File: SGN-E313555+) 1 AAAAATGGCA AAGAGTGGCA TTTTGGTAAT TGTTTCAGCT CTTGTTGTTC TTGCAGTTTG 61 TGGTGTTTTT GCTGAGGAGA ACGAATATGT GTTGACTTTG GACCATTCTA ACCTCACTGA 121 GACTGTTGCT AAGCACAACT TCATTGTTGT TGAATTCTAT GCACCTTGGT GTGGACACTG 181 TAAGAGTCTT GCTCCTGAGT ATGAAAAAGC TGCCTCAGAG CTGAGTAGTC ATGACCCTCC 241 AATTGTTCTA GCTAAGTATG ATGCAAATGA TGAAGCCAAT AGAGAACTTT CAAAACAGTA 301 CGAGATCCAG GGTTTCCCAA CTATTAAGAT ATTGAGAGAT GGAGGAAAGA AAGTTCAAGA 361 CTATAACGGT CCTCGTGAAG CAGCTGGTAT TGTATCCTAC TTGAAGAAAC AAGTGGGTCC 421 TGCATCTGCT GAAATCAAGT CGAAAGAAGA TGCCACAAAC CTTATTGATG AGAAAAGTAT 481 CTTTGTTGTT GGTATATTTC CAGACCCCTC CGGAGAGAAA TTCGAGAACT ATTTAACGC Predicted gene structure (within gDNA segment 1025 to 4170): Exon 1 1625 1792 ( 168 n); cDNA 1 168 ( 168 n); score: 1.000 Intron 1 1793 2968 (1176 n); Pd: 1.000 (s: 1.00), Pa: 0.997 (s: 0) Exon 2 2969 2999 ( 31 n); cDNA 169 199 ( 31 n); score: 1.000 Intron 2 3000 3122 ( 123 n); Pd: 0.917 (s: 0), Pa: 0.997 (s: 1.00) Exon 3 3123 3410 ( 288 n); cDNA 200 487 ( 288 n); score: 0.997 Intron 3 3411 3508 ( 98 n); Pd: 0.907 (s: 0.98), Pa: 0.997 (s: 1.00) Exon 4 3509 3560 ( 52 n); cDNA 488 539 ( 52 n); score: 1.000 MATCH C06HBa0054K13.1-11+ SGN-E313555+ 0.998 539 1.000 C PGS_C06HBa0054K13.1-11+_SGN-E313555+ (1625 1792,2969 2999,3123 3410,3509 3560) Alignment (genomic DNA sequence = upper lines): AAAAATGGCA AAGAGTGGCA TTTTGGTAAT TGTTTCAGCT CTTGTTGTTC TTGCAGTTTG 1684 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAAATGGCA AAGAGTGGCA TTTTGGTAAT TGTTTCAGCT CTTGTTGTTC TTGCAGTTTG 60 TGGTGTTTTT GCTGAGGAGA ACGAATATGT GTTGACTTTG GACCATTCTA ACCTCACTGA 1744 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGTGTTTTT GCTGAGGAGA ACGAATATGT GTTGACTTTG GACCATTCTA ACCTCACTGA 120 GACTGTTGCT AAGCACAACT TCATTGTTGT TGAATTCTAT GCACCTTGGT AAGTCATCTG 1804 |||||||||| |||||||||| |||||||||| |||||||||| |||||||| GACTGTTGCT AAGCACAACT TCATTGTTGT TGAATTCTAT GCACCTTG.. .......... 168 CTGTTTTTTT TTCTATTTAT TTTCTTGAAA AAAGTTCATT TTTTTTGCTT GTTGAATCTG 1864 .......... .......... .......... .......... .......... .......... 168 TATGTGCAGA ATGTAATGAA TGATTGGATG TAAGGGGTTT TGTTTTTGAT CTGTTTTTTT 1924 .......... .......... .......... .......... .......... .......... 168 TTTGTTATTT TAGTGAATTT TTGCTGTAAT TTTTTTGTTT TCATAAGCTG TGTGAGGAAT 1984 .......... .......... .......... .......... .......... .......... 168 GCATCAAGAT CAGTTCTTTA TGTTAATTTG TCTTAAAGGG TTCATCAAGG ACCCCTTTGG 2044 .......... .......... .......... .......... .......... .......... 168 CTCTACTTTG CTGTTCCTGT TTTTTTTTTT TTTTTGGAGT TTTATCTTTT TGCTGGTTTC 2104 .......... .......... .......... .......... .......... .......... 168 TCTGGCTTTA GAAACTGCAT GTGCAGAAGA TAATCAATGA CTGGTTCTTT TTCTTTTGGG 2164 .......... .......... .......... .......... .......... .......... 168 GAATTTAAGG TTTTGTTATG TAAATGGTTT TTTTTTCTGA TTTTTCTGCT GTAATTTTTT 2224 .......... .......... .......... .......... .......... .......... 168 ATTTTACACA TTGACTTGAA TTTGTCTGAA AGGGTTTTTC AAGGATCCTT TTGTTGATGG 2284 .......... .......... .......... .......... .......... .......... 168 ATGTATTTTG ATTTGTGGAT TGATTGAGGT TTTAAGGCTT TTTCTGTAAA AAGCTTCTTC 2344 .......... .......... .......... .......... .......... .......... 168 TTTTAATTCA TGGTTGATGC TTCTAGAATC TGGATTTGCT TGATGAGTTC TAGGTTATAA 2404 .......... .......... .......... .......... .......... .......... 168 GGTTTCCTCT TTTTATTTAA TTTGCTGCTT GTTTTTTGGT ATTTAAAATC TCTGTGTCCA 2464 .......... .......... .......... .......... .......... .......... 168 GAATTTTACA AAAATATTAA TAAATCTGGA TTTGTCTTTG TGTTCTGTGT TGCTGCAAGT 2524 .......... .......... .......... .......... .......... .......... 168 TAATGGTTTT TCCATTTCTG TGACAGTCTA GTCAATTGGA ATGTAAAATC TGTTTTTCTA 2584 .......... .......... .......... .......... .......... .......... 168 TTTTTGTGTA TGTATTTGGA TCTATGTCAA GAGGTTCCAG TGATCTGTGT TAATAGAAGT 2644 .......... .......... .......... .......... .......... .......... 168 GATTCTTTTA GCCAAATTGT CTTCTTGTTA TGTGTAGTGG TGGATCCAAT GTAATGGTAC 2704 .......... .......... .......... .......... .......... .......... 168 CAGGTTCATC TGAACCTAAT AGTTTCGACT CGGAGCATAA ATTTATGTGT AGGAATTCAC 2764 .......... .......... .......... .......... .......... .......... 168 TAAAATTGCA ATAAATAGTA GACATGAATG ATGTTGATGA CGACATGCTT GAGATGGTTG 2824 .......... .......... .......... .......... .......... .......... 168 TATTAATAGC TTGCATTAGT TTCGATCTTT TCTATGGTAT CAATTCCCAT AGTTATACGT 2884 .......... .......... .......... .......... .......... .......... 168 TGTTGTCGAA ATGTTTATTT AGTTATTCTT TGACATGAAA TTTTTTTACT TTATGAGTAA 2944 .......... .......... .......... .......... .......... .......... 168 CTGATAATAT ACTTGCAATT ACAGGTGTGG ACACTGTAAG AGTCTTGCTC CTGAGGTACA 3004 |||||| |||||||||| |||||||||| ||||| .......... .......... ....GTGTGG ACACTGTAAG AGTCTTGCTC CTGAG..... 199 CTTTCTTCTA TACAGTGCTT AATGAAGGAA GGAATATCAT TTTTCTCTGT CATTATGTTT 3064 .......... .......... .......... .......... .......... .......... 199 TTTCTTGGCA TTTTCAATCT ATGCAACTGA TTTAATGTTA AATTATGTTT CTTTCCAGTA 3124 || .......... .......... .......... .......... .......... ........TA 201 TGAAAAAGCT GCCTCAGAGC TGAGTAGTCA TGACCCTCCA ATTGTTCTAG CTAAGTATGA 3184 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAAAAAGCT GCCTCAGAGC TGAGTAGTCA TGACCCTCCA ATTGTTCTAG CTAAGTATGA 261 TGCAAATGAT GAAGCCAATA GAGAACTTTC AAAACAGTAC GAGATCCAGG GTTTCCCAAC 3244 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCAAATGAT GAAGCCAATA GAGAACTTTC AAAACAGTAC GAGATCCAGG GTTTCCCAAC 321 TATTAAGATA TTGAGAGATG GAGGAAAGAA AGTTCAAGAC TATAACGGTC CTCGTGAAGC 3304 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATTAAGATA TTGAGAGATG GAGGAAAGAA AGTTCAAGAC TATAACGGTC CTCGTGAAGC 381 AGCTGGTATT GTATCCTACT TGAAGAAACA AGTGGGTCCT GCATCTGCTG AAATCAAGTC 3364 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCTGGTATT GTATCCTACT TGAAGAAACA AGTGGGTCCT GCATCTGCTG AAATCAAGTC 441 GAAGGAAGAT GCCACAAACC TTATTGATGA GAAAAGTATC TTTGTTGTAA GTGGTGATAC 3424 ||| |||||| |||||||||| |||||||||| |||||||||| |||||| GAAAGAAGAT GCCACAAACC TTATTGATGA GAAAAGTATC TTTGTT.... .......... 487 TTTTGATGTT TTACTTATCA TTACTGAAGT TTATTTTCAG CATGCCATAG CTTCTTGCTG 3484 .......... .......... .......... .......... .......... .......... 487 TCTAAAATCT TTCTGTTTCT TTAGGTTGGT ATATTTCCAG ACCCCTCCGG AGAGAAATTC 3544 |||||| |||||||||| |||||||||| |||||||||| .......... .......... ....GTTGGT ATATTTCCAG ACCCCTCCGG AGAGAAATTC 523 GAGAACTATT TAACGC 3560 |||||||||| |||||| GAGAACTATT TAACGC 539 hqPGS_C06HBa0054K13.1-11+_SGN-E313555+ (1625 1792,2969 2999,3123 3410,3509 3560) ******************************************************************************** EST sequence 17 +strand 497 n (File: SGN-E202399+) 1 AAAAATGGCA AAGAGTGGCA TTTTGGTAAT TGTTTCAGCT CTTGTTGTTC TTGCAGTTTG 61 TGGTGTTTTT GCTGAGGAGA ACGAATATGT GTTGACTTTG GACCATTCTA ACCTCACTGA 121 GACTGTTGCT AAGCACAACT TCATTGTTGT TGAATTCTAT GCACCTTGGT GTGGACACTG 181 TAAGAGTCTT GCTCCTGAGT ATGAAAAAGC TGCCTCAGAG CTGAGTAGTC ATGACCCTCC 241 AATTGTTCTA GCTAAGTATG ATGCAAATGA TGAAGCCAAT AGAGAACTTT CAAAACAGTA 301 CGAGATCCAG GGTTTCCCAA CTATTAAGAT ATTGAGAGAT GGAGGAAAGA AAGTTCAAGA 361 CTATAACGGT CCTCGTGAAG CAGCTGGTAT TGTATCCTAC TTGAAGAAAC AAGTGGGTCC 421 TGCATCTGCT GAAATCAAGT CGAAGGAAGA TGCCACAAAC CTTATTGATG AGAAAAGTAT 481 CTTTGTTGTT GGTATAT Predicted gene structure (within gDNA segment 1025 to 4102): Exon 1 1625 1792 ( 168 n); cDNA 1 168 ( 168 n); score: 1.000 Intron 1 1793 2968 (1176 n); Pd: 1.000 (s: 1.00), Pa: 0.997 (s: 0) Exon 2 2969 2999 ( 31 n); cDNA 169 199 ( 31 n); score: 1.000 Intron 2 3000 3122 ( 123 n); Pd: 0.917 (s: 0), Pa: 0.997 (s: 1.00) Exon 3 3123 3410 ( 288 n); cDNA 200 487 ( 288 n); score: 1.000 Intron 3 3411 3508 ( 98 n); Pd: 0.907 (s: 1.00), Pa: 0.997 (s: 0) Exon 4 3509 3518 ( 10 n); cDNA 488 497 ( 10 n); score: 1.000 MATCH C06HBa0054K13.1-11+ SGN-E202399+ 1.000 497 1.000 C PGS_C06HBa0054K13.1-11+_SGN-E202399+ (1625 1792,2969 2999,3123 3410,3509 3518) Alignment (genomic DNA sequence = upper lines): AAAAATGGCA AAGAGTGGCA TTTTGGTAAT TGTTTCAGCT CTTGTTGTTC TTGCAGTTTG 1684 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAAATGGCA AAGAGTGGCA TTTTGGTAAT TGTTTCAGCT CTTGTTGTTC TTGCAGTTTG 60 TGGTGTTTTT GCTGAGGAGA ACGAATATGT GTTGACTTTG GACCATTCTA ACCTCACTGA 1744 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGTGTTTTT GCTGAGGAGA ACGAATATGT GTTGACTTTG GACCATTCTA ACCTCACTGA 120 GACTGTTGCT AAGCACAACT TCATTGTTGT TGAATTCTAT GCACCTTGGT AAGTCATCTG 1804 |||||||||| |||||||||| |||||||||| |||||||||| |||||||| GACTGTTGCT AAGCACAACT TCATTGTTGT TGAATTCTAT GCACCTTG.. .......... 168 CTGTTTTTTT TTCTATTTAT TTTCTTGAAA AAAGTTCATT TTTTTTGCTT GTTGAATCTG 1864 .......... .......... .......... .......... .......... .......... 168 TATGTGCAGA ATGTAATGAA TGATTGGATG TAAGGGGTTT TGTTTTTGAT CTGTTTTTTT 1924 .......... .......... .......... .......... .......... .......... 168 TTTGTTATTT TAGTGAATTT TTGCTGTAAT TTTTTTGTTT TCATAAGCTG TGTGAGGAAT 1984 .......... .......... .......... .......... .......... .......... 168 GCATCAAGAT CAGTTCTTTA TGTTAATTTG TCTTAAAGGG TTCATCAAGG ACCCCTTTGG 2044 .......... .......... .......... .......... .......... .......... 168 CTCTACTTTG CTGTTCCTGT TTTTTTTTTT TTTTTGGAGT TTTATCTTTT TGCTGGTTTC 2104 .......... .......... .......... .......... .......... .......... 168 TCTGGCTTTA GAAACTGCAT GTGCAGAAGA TAATCAATGA CTGGTTCTTT TTCTTTTGGG 2164 .......... .......... .......... .......... .......... .......... 168 GAATTTAAGG TTTTGTTATG TAAATGGTTT TTTTTTCTGA TTTTTCTGCT GTAATTTTTT 2224 .......... .......... .......... .......... .......... .......... 168 ATTTTACACA TTGACTTGAA TTTGTCTGAA AGGGTTTTTC AAGGATCCTT TTGTTGATGG 2284 .......... .......... .......... .......... .......... .......... 168 ATGTATTTTG ATTTGTGGAT TGATTGAGGT TTTAAGGCTT TTTCTGTAAA AAGCTTCTTC 2344 .......... .......... .......... .......... .......... .......... 168 TTTTAATTCA TGGTTGATGC TTCTAGAATC TGGATTTGCT TGATGAGTTC TAGGTTATAA 2404 .......... .......... .......... .......... .......... .......... 168 GGTTTCCTCT TTTTATTTAA TTTGCTGCTT GTTTTTTGGT ATTTAAAATC TCTGTGTCCA 2464 .......... .......... .......... .......... .......... .......... 168 GAATTTTACA AAAATATTAA TAAATCTGGA TTTGTCTTTG TGTTCTGTGT TGCTGCAAGT 2524 .......... .......... .......... .......... .......... .......... 168 TAATGGTTTT TCCATTTCTG TGACAGTCTA GTCAATTGGA ATGTAAAATC TGTTTTTCTA 2584 .......... .......... .......... .......... .......... .......... 168 TTTTTGTGTA TGTATTTGGA TCTATGTCAA GAGGTTCCAG TGATCTGTGT TAATAGAAGT 2644 .......... .......... .......... .......... .......... .......... 168 GATTCTTTTA GCCAAATTGT CTTCTTGTTA TGTGTAGTGG TGGATCCAAT GTAATGGTAC 2704 .......... .......... .......... .......... .......... .......... 168 CAGGTTCATC TGAACCTAAT AGTTTCGACT CGGAGCATAA ATTTATGTGT AGGAATTCAC 2764 .......... .......... .......... .......... .......... .......... 168 TAAAATTGCA ATAAATAGTA GACATGAATG ATGTTGATGA CGACATGCTT GAGATGGTTG 2824 .......... .......... .......... .......... .......... .......... 168 TATTAATAGC TTGCATTAGT TTCGATCTTT TCTATGGTAT CAATTCCCAT AGTTATACGT 2884 .......... .......... .......... .......... .......... .......... 168 TGTTGTCGAA ATGTTTATTT AGTTATTCTT TGACATGAAA TTTTTTTACT TTATGAGTAA 2944 .......... .......... .......... .......... .......... .......... 168 CTGATAATAT ACTTGCAATT ACAGGTGTGG ACACTGTAAG AGTCTTGCTC CTGAGGTACA 3004 |||||| |||||||||| |||||||||| ||||| .......... .......... ....GTGTGG ACACTGTAAG AGTCTTGCTC CTGAG..... 199 CTTTCTTCTA TACAGTGCTT AATGAAGGAA GGAATATCAT TTTTCTCTGT CATTATGTTT 3064 .......... .......... .......... .......... .......... .......... 199 TTTCTTGGCA TTTTCAATCT ATGCAACTGA TTTAATGTTA AATTATGTTT CTTTCCAGTA 3124 || .......... .......... .......... .......... .......... ........TA 201 TGAAAAAGCT GCCTCAGAGC TGAGTAGTCA TGACCCTCCA ATTGTTCTAG CTAAGTATGA 3184 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAAAAAGCT GCCTCAGAGC TGAGTAGTCA TGACCCTCCA ATTGTTCTAG CTAAGTATGA 261 TGCAAATGAT GAAGCCAATA GAGAACTTTC AAAACAGTAC GAGATCCAGG GTTTCCCAAC 3244 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCAAATGAT GAAGCCAATA GAGAACTTTC AAAACAGTAC GAGATCCAGG GTTTCCCAAC 321 TATTAAGATA TTGAGAGATG GAGGAAAGAA AGTTCAAGAC TATAACGGTC CTCGTGAAGC 3304 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATTAAGATA TTGAGAGATG GAGGAAAGAA AGTTCAAGAC TATAACGGTC CTCGTGAAGC 381 AGCTGGTATT GTATCCTACT TGAAGAAACA AGTGGGTCCT GCATCTGCTG AAATCAAGTC 3364 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCTGGTATT GTATCCTACT TGAAGAAACA AGTGGGTCCT GCATCTGCTG AAATCAAGTC 441 GAAGGAAGAT GCCACAAACC TTATTGATGA GAAAAGTATC TTTGTTGTAA GTGGTGATAC 3424 |||||||||| |||||||||| |||||||||| |||||||||| |||||| GAAGGAAGAT GCCACAAACC TTATTGATGA GAAAAGTATC TTTGTT.... .......... 487 TTTTGATGTT TTACTTATCA TTACTGAAGT TTATTTTCAG CATGCCATAG CTTCTTGCTG 3484 .......... .......... .......... .......... .......... .......... 487 TCTAAAATCT TTCTGTTTCT TTAGGTTGGT ATAT 3518 |||||| |||| .......... .......... ....GTTGGT ATAT 497 hqPGS_C06HBa0054K13.1-11+_SGN-E202399+ (1625 1792,2969 2999,3123 3410,3509 3518) ******************************************************************************** EST sequence 66 +strand 485 n (File: SGN-E310497+) 1 AAAAATGGCA AAGAGTGGCA TTTTGGTAAT TGTTTCAGCT CTTGTTGTTC TTGCAGTTTG 61 TGGTGTTTTT GCTGAGGAGA ACGAATATGT GTTGACTTTG GACCATTCTA ACCTCACTGA 121 GACTGTTGCT AAGCACAACT TCATTGTTGT TGAATTCTAT GCACCTTGGT GTGGACACTG 181 TAAGAGTCTT GCTCCTGAGT ATGAAAAAGC TGCCTCAGAG CTGAGTAGTC ATGACCCTCC 241 AATTGTTCTA GCTAAGTATG ATGCAAATGA TGAAGCCAAT AGAGAACTTT CAAAACAGTA 301 CGAGATCCAC GGTTTCCCAA CTATTAAGAT ATTGAGAGAT GGAGGAAAGA AAGTTCAAGA 361 CTATTACGGG CCTCGTGAAG CAGCTGGTAT TGTATCCTAC TTGAAGAAAC AAGTGGGTCC 421 TGCATCTGCT TAAATCAAGT CGAAGGAAGA TGCCACAAAC CTTATTGATG AGAAAAGTAT 481 CTTTG Predicted gene structure (within gDNA segment 1025 to 4018): Exon 1 1625 1792 ( 168 n); cDNA 1 168 ( 168 n); score: 1.000 Intron 1 1793 2968 (1176 n); Pd: 1.000 (s: 1.00), Pa: 0.997 (s: 0) Exon 2 2969 2999 ( 31 n); cDNA 169 199 ( 31 n); score: 1.000 Intron 2 3000 3122 ( 123 n); Pd: 0.917 (s: 0), Pa: 0.997 (s: 1.00) Exon 3 3123 3408 ( 286 n); cDNA 200 485 ( 286 n); score: 0.986 MATCH C06HBa0054K13.1-11+ SGN-E310497+ 0.991 485 1.000 C PGS_C06HBa0054K13.1-11+_SGN-E310497+ (1625 1792,2969 2999,3123 3408) Alignment (genomic DNA sequence = upper lines): AAAAATGGCA AAGAGTGGCA TTTTGGTAAT TGTTTCAGCT CTTGTTGTTC TTGCAGTTTG 1684 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAAATGGCA AAGAGTGGCA TTTTGGTAAT TGTTTCAGCT CTTGTTGTTC TTGCAGTTTG 60 TGGTGTTTTT GCTGAGGAGA ACGAATATGT GTTGACTTTG GACCATTCTA ACCTCACTGA 1744 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGTGTTTTT GCTGAGGAGA ACGAATATGT GTTGACTTTG GACCATTCTA ACCTCACTGA 120 GACTGTTGCT AAGCACAACT TCATTGTTGT TGAATTCTAT GCACCTTGGT AAGTCATCTG 1804 |||||||||| |||||||||| |||||||||| |||||||||| |||||||| GACTGTTGCT AAGCACAACT TCATTGTTGT TGAATTCTAT GCACCTTG.. .......... 168 CTGTTTTTTT TTCTATTTAT TTTCTTGAAA AAAGTTCATT TTTTTTGCTT GTTGAATCTG 1864 .......... .......... .......... .......... .......... .......... 168 TATGTGCAGA ATGTAATGAA TGATTGGATG TAAGGGGTTT TGTTTTTGAT CTGTTTTTTT 1924 .......... .......... .......... .......... .......... .......... 168 TTTGTTATTT TAGTGAATTT TTGCTGTAAT TTTTTTGTTT TCATAAGCTG TGTGAGGAAT 1984 .......... .......... .......... .......... .......... .......... 168 GCATCAAGAT CAGTTCTTTA TGTTAATTTG TCTTAAAGGG TTCATCAAGG ACCCCTTTGG 2044 .......... .......... .......... .......... .......... .......... 168 CTCTACTTTG CTGTTCCTGT TTTTTTTTTT TTTTTGGAGT TTTATCTTTT TGCTGGTTTC 2104 .......... .......... .......... .......... .......... .......... 168 TCTGGCTTTA GAAACTGCAT GTGCAGAAGA TAATCAATGA CTGGTTCTTT TTCTTTTGGG 2164 .......... .......... .......... .......... .......... .......... 168 GAATTTAAGG TTTTGTTATG TAAATGGTTT TTTTTTCTGA TTTTTCTGCT GTAATTTTTT 2224 .......... .......... .......... .......... .......... .......... 168 ATTTTACACA TTGACTTGAA TTTGTCTGAA AGGGTTTTTC AAGGATCCTT TTGTTGATGG 2284 .......... .......... .......... .......... .......... .......... 168 ATGTATTTTG ATTTGTGGAT TGATTGAGGT TTTAAGGCTT TTTCTGTAAA AAGCTTCTTC 2344 .......... .......... .......... .......... .......... .......... 168 TTTTAATTCA TGGTTGATGC TTCTAGAATC TGGATTTGCT TGATGAGTTC TAGGTTATAA 2404 .......... .......... .......... .......... .......... .......... 168 GGTTTCCTCT TTTTATTTAA TTTGCTGCTT GTTTTTTGGT ATTTAAAATC TCTGTGTCCA 2464 .......... .......... .......... .......... .......... .......... 168 GAATTTTACA AAAATATTAA TAAATCTGGA TTTGTCTTTG TGTTCTGTGT TGCTGCAAGT 2524 .......... .......... .......... .......... .......... .......... 168 TAATGGTTTT TCCATTTCTG TGACAGTCTA GTCAATTGGA ATGTAAAATC TGTTTTTCTA 2584 .......... .......... .......... .......... .......... .......... 168 TTTTTGTGTA TGTATTTGGA TCTATGTCAA GAGGTTCCAG TGATCTGTGT TAATAGAAGT 2644 .......... .......... .......... .......... .......... .......... 168 GATTCTTTTA GCCAAATTGT CTTCTTGTTA TGTGTAGTGG TGGATCCAAT GTAATGGTAC 2704 .......... .......... .......... .......... .......... .......... 168 CAGGTTCATC TGAACCTAAT AGTTTCGACT CGGAGCATAA ATTTATGTGT AGGAATTCAC 2764 .......... .......... .......... .......... .......... .......... 168 TAAAATTGCA ATAAATAGTA GACATGAATG ATGTTGATGA CGACATGCTT GAGATGGTTG 2824 .......... .......... .......... .......... .......... .......... 168 TATTAATAGC TTGCATTAGT TTCGATCTTT TCTATGGTAT CAATTCCCAT AGTTATACGT 2884 .......... .......... .......... .......... .......... .......... 168 TGTTGTCGAA ATGTTTATTT AGTTATTCTT TGACATGAAA TTTTTTTACT TTATGAGTAA 2944 .......... .......... .......... .......... .......... .......... 168 CTGATAATAT ACTTGCAATT ACAGGTGTGG ACACTGTAAG AGTCTTGCTC CTGAGGTACA 3004 |||||| |||||||||| |||||||||| ||||| .......... .......... ....GTGTGG ACACTGTAAG AGTCTTGCTC CTGAG..... 199 CTTTCTTCTA TACAGTGCTT AATGAAGGAA GGAATATCAT TTTTCTCTGT CATTATGTTT 3064 .......... .......... .......... .......... .......... .......... 199 TTTCTTGGCA TTTTCAATCT ATGCAACTGA TTTAATGTTA AATTATGTTT CTTTCCAGTA 3124 || .......... .......... .......... .......... .......... ........TA 201 TGAAAAAGCT GCCTCAGAGC TGAGTAGTCA TGACCCTCCA ATTGTTCTAG CTAAGTATGA 3184 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAAAAAGCT GCCTCAGAGC TGAGTAGTCA TGACCCTCCA ATTGTTCTAG CTAAGTATGA 261 TGCAAATGAT GAAGCCAATA GAGAACTTTC AAAACAGTAC GAGATCCAGG GTTTCCCAAC 3244 |||||||||| |||||||||| |||||||||| |||||||||| |||||||| | |||||||||| TGCAAATGAT GAAGCCAATA GAGAACTTTC AAAACAGTAC GAGATCCACG GTTTCCCAAC 321 TATTAAGATA TTGAGAGATG GAGGAAAGAA AGTTCAAGAC TATAACGGTC CTCGTGAAGC 3304 |||||||||| |||||||||| |||||||||| |||||||||| ||| |||| | |||||||||| TATTAAGATA TTGAGAGATG GAGGAAAGAA AGTTCAAGAC TATTACGGGC CTCGTGAAGC 381 AGCTGGTATT GTATCCTACT TGAAGAAACA AGTGGGTCCT GCATCTGCTG AAATCAAGTC 3364 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| |||||||||| AGCTGGTATT GTATCCTACT TGAAGAAACA AGTGGGTCCT GCATCTGCTT AAATCAAGTC 441 GAAGGAAGAT GCCACAAACC TTATTGATGA GAAAAGTATC TTTG 3408 |||||||||| |||||||||| |||||||||| |||||||||| |||| GAAGGAAGAT GCCACAAACC TTATTGATGA GAAAAGTATC TTTG 485 hqPGS_C06HBa0054K13.1-11+_SGN-E310497+ (1625 1792,2969 2999,3123 3408) ******************************************************************************** EST sequence 57 +strand 484 n (File: SGN-E336624+) 1 AAAAATGGCA AAGAGTGGCA TTTTGGTAAT TGTTTCAGCT CTTGTTGTTC TTGCAGTTTG 61 TGGTGTTTTT GCTGAGGAGA ACGAATATGT GTTGACTTTG GACCATTCTA ACCTCACTGA 121 GACTGTTGCT AAGCACAACT TCATTGTTGT TGAATTCTAT GCACCTTGGT GTGGACACTG 181 TAAGAGTCTT GCTCCTGAGT ATGAAAAAGC TGCCTCAGAG CTGAGTAGTC ATGACCCTCC 241 AATTGTTCTA GCTAAGTATG ATGCAAATGA TGAAGCCAAT AGAGAACTTT CAAAACAGTA 301 CGAGATCCAG GGTTTCCCAA CTATTAAGAT ATTGAGAGAT GGAGGAAAGA AAGTTCAAGA 361 CTATAACGGT CCTCGTGAAG CAGCTGGTAT TGTATCCTAC TTGAAGAAAC AAGTGGGTCC 421 TGCATCTGCT GAAATCAAGT CGAAGGAAGA TGCCACANAC CTTATTGATG AGAAAAGTAT 481 CTTT Predicted gene structure (within gDNA segment 1025 to 4017): Exon 1 1625 1792 ( 168 n); cDNA 1 168 ( 168 n); score: 1.000 Intron 1 1793 2968 (1176 n); Pd: 1.000 (s: 1.00), Pa: 0.997 (s: 0) Exon 2 2969 2999 ( 31 n); cDNA 169 199 ( 31 n); score: 1.000 Intron 2 3000 3122 ( 123 n); Pd: 0.917 (s: 0), Pa: 0.997 (s: 1.00) Exon 3 3123 3407 ( 285 n); cDNA 200 484 ( 285 n); score: 0.996 MATCH C06HBa0054K13.1-11+ SGN-E336624+ 0.998 484 1.000 C PGS_C06HBa0054K13.1-11+_SGN-E336624+ (1625 1792,2969 2999,3123 3407) Alignment (genomic DNA sequence = upper lines): AAAAATGGCA AAGAGTGGCA TTTTGGTAAT TGTTTCAGCT CTTGTTGTTC TTGCAGTTTG 1684 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAAATGGCA AAGAGTGGCA TTTTGGTAAT TGTTTCAGCT CTTGTTGTTC TTGCAGTTTG 60 TGGTGTTTTT GCTGAGGAGA ACGAATATGT GTTGACTTTG GACCATTCTA ACCTCACTGA 1744 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGTGTTTTT GCTGAGGAGA ACGAATATGT GTTGACTTTG GACCATTCTA ACCTCACTGA 120 GACTGTTGCT AAGCACAACT TCATTGTTGT TGAATTCTAT GCACCTTGGT AAGTCATCTG 1804 |||||||||| |||||||||| |||||||||| |||||||||| |||||||| GACTGTTGCT AAGCACAACT TCATTGTTGT TGAATTCTAT GCACCTTG.. .......... 168 CTGTTTTTTT TTCTATTTAT TTTCTTGAAA AAAGTTCATT TTTTTTGCTT GTTGAATCTG 1864 .......... .......... .......... .......... .......... .......... 168 TATGTGCAGA ATGTAATGAA TGATTGGATG TAAGGGGTTT TGTTTTTGAT CTGTTTTTTT 1924 .......... .......... .......... .......... .......... .......... 168 TTTGTTATTT TAGTGAATTT TTGCTGTAAT TTTTTTGTTT TCATAAGCTG TGTGAGGAAT 1984 .......... .......... .......... .......... .......... .......... 168 GCATCAAGAT CAGTTCTTTA TGTTAATTTG TCTTAAAGGG TTCATCAAGG ACCCCTTTGG 2044 .......... .......... .......... .......... .......... .......... 168 CTCTACTTTG CTGTTCCTGT TTTTTTTTTT TTTTTGGAGT TTTATCTTTT TGCTGGTTTC 2104 .......... .......... .......... .......... .......... .......... 168 TCTGGCTTTA GAAACTGCAT GTGCAGAAGA TAATCAATGA CTGGTTCTTT TTCTTTTGGG 2164 .......... .......... .......... .......... .......... .......... 168 GAATTTAAGG TTTTGTTATG TAAATGGTTT TTTTTTCTGA TTTTTCTGCT GTAATTTTTT 2224 .......... .......... .......... .......... .......... .......... 168 ATTTTACACA TTGACTTGAA TTTGTCTGAA AGGGTTTTTC AAGGATCCTT TTGTTGATGG 2284 .......... .......... .......... .......... .......... .......... 168 ATGTATTTTG ATTTGTGGAT TGATTGAGGT TTTAAGGCTT TTTCTGTAAA AAGCTTCTTC 2344 .......... .......... .......... .......... .......... .......... 168 TTTTAATTCA TGGTTGATGC TTCTAGAATC TGGATTTGCT TGATGAGTTC TAGGTTATAA 2404 .......... .......... .......... .......... .......... .......... 168 GGTTTCCTCT TTTTATTTAA TTTGCTGCTT GTTTTTTGGT ATTTAAAATC TCTGTGTCCA 2464 .......... .......... .......... .......... .......... .......... 168 GAATTTTACA AAAATATTAA TAAATCTGGA TTTGTCTTTG TGTTCTGTGT TGCTGCAAGT 2524 .......... .......... .......... .......... .......... .......... 168 TAATGGTTTT TCCATTTCTG TGACAGTCTA GTCAATTGGA ATGTAAAATC TGTTTTTCTA 2584 .......... .......... .......... .......... .......... .......... 168 TTTTTGTGTA TGTATTTGGA TCTATGTCAA GAGGTTCCAG TGATCTGTGT TAATAGAAGT 2644 .......... .......... .......... .......... .......... .......... 168 GATTCTTTTA GCCAAATTGT CTTCTTGTTA TGTGTAGTGG TGGATCCAAT GTAATGGTAC 2704 .......... .......... .......... .......... .......... .......... 168 CAGGTTCATC TGAACCTAAT AGTTTCGACT CGGAGCATAA ATTTATGTGT AGGAATTCAC 2764 .......... .......... .......... .......... .......... .......... 168 TAAAATTGCA ATAAATAGTA GACATGAATG ATGTTGATGA CGACATGCTT GAGATGGTTG 2824 .......... .......... .......... .......... .......... .......... 168 TATTAATAGC TTGCATTAGT TTCGATCTTT TCTATGGTAT CAATTCCCAT AGTTATACGT 2884 .......... .......... .......... .......... .......... .......... 168 TGTTGTCGAA ATGTTTATTT AGTTATTCTT TGACATGAAA TTTTTTTACT TTATGAGTAA 2944 .......... .......... .......... .......... .......... .......... 168 CTGATAATAT ACTTGCAATT ACAGGTGTGG ACACTGTAAG AGTCTTGCTC CTGAGGTACA 3004 |||||| |||||||||| |||||||||| ||||| .......... .......... ....GTGTGG ACACTGTAAG AGTCTTGCTC CTGAG..... 199 CTTTCTTCTA TACAGTGCTT AATGAAGGAA GGAATATCAT TTTTCTCTGT CATTATGTTT 3064 .......... .......... .......... .......... .......... .......... 199 TTTCTTGGCA TTTTCAATCT ATGCAACTGA TTTAATGTTA AATTATGTTT CTTTCCAGTA 3124 || .......... .......... .......... .......... .......... ........TA 201 TGAAAAAGCT GCCTCAGAGC TGAGTAGTCA TGACCCTCCA ATTGTTCTAG CTAAGTATGA 3184 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAAAAAGCT GCCTCAGAGC TGAGTAGTCA TGACCCTCCA ATTGTTCTAG CTAAGTATGA 261 TGCAAATGAT GAAGCCAATA GAGAACTTTC AAAACAGTAC GAGATCCAGG GTTTCCCAAC 3244 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCAAATGAT GAAGCCAATA GAGAACTTTC AAAACAGTAC GAGATCCAGG GTTTCCCAAC 321 TATTAAGATA TTGAGAGATG GAGGAAAGAA AGTTCAAGAC TATAACGGTC CTCGTGAAGC 3304 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATTAAGATA TTGAGAGATG GAGGAAAGAA AGTTCAAGAC TATAACGGTC CTCGTGAAGC 381 AGCTGGTATT GTATCCTACT TGAAGAAACA AGTGGGTCCT GCATCTGCTG AAATCAAGTC 3364 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCTGGTATT GTATCCTACT TGAAGAAACA AGTGGGTCCT GCATCTGCTG AAATCAAGTC 441 GAAGGAAGAT GCCACAAACC TTATTGATGA GAAAAGTATC TTT 3407 |||||||||| |||||| ||| |||||||||| |||||||||| ||| GAAGGAAGAT GCCACANACC TTATTGATGA GAAAAGTATC TTT 484 hqPGS_C06HBa0054K13.1-11+_SGN-E336624+ (1625 1792,2969 2999,3123 3407) ******************************************************************************** EST sequence 116 +strand 484 n (File: SGN-E313518+) 1 AAAAATGGCA AAGAGTGGCA TTTTGGTAAT TGTTTCAGCT CTTGTTGTTC TTGCAGTTTG 61 TGGTGTTTTT GCTGAGGAGA ACGAATATGT GTTGACTTTG GACCATTCTA ACCTCACTGA 121 GACTGTTGCT AAGCACAACT TCATTGTTGT TGAATTCTAT GCACCTTGGT GTGGACACTG 181 TAAGAGTCTT GCTCCTGAGT ATGAAAAAGC TGCCTCAGAG CTGAGTAGTC ATGACCCTCC 241 AATTGTTCTA GCTAAGTATG ATGCAAATGA TGAAGCCAAT AGAGAACTTT CAAAACAGTA 301 CGAGATCCAG GGTTTCCCAA CTATTAAGAT ATTGAGAGAT GGAGGAAAGA AAGTTCAAGA 361 CTATAACGGT CCTCGTGAAG CAGCTGGTAT TGTATCCTAC TTGAAGAAAC AAGTGGGTCC 421 TGCATCTGCT GAAATCAAGT CGAAAGAAGA TGCCACAAAC CTTATTGATG AGAAAAGTAT 481 CTTT Predicted gene structure (within gDNA segment 1025 to 4017): Exon 1 1625 1792 ( 168 n); cDNA 1 168 ( 168 n); score: 1.000 Intron 1 1793 2968 (1176 n); Pd: 1.000 (s: 1.00), Pa: 0.997 (s: 0) Exon 2 2969 2999 ( 31 n); cDNA 169 199 ( 31 n); score: 1.000 Intron 2 3000 3122 ( 123 n); Pd: 0.917 (s: 0), Pa: 0.997 (s: 1.00) Exon 3 3123 3407 ( 285 n); cDNA 200 484 ( 285 n); score: 0.996 MATCH C06HBa0054K13.1-11+ SGN-E313518+ 0.998 484 1.000 C PGS_C06HBa0054K13.1-11+_SGN-E313518+ (1625 1792,2969 2999,3123 3407) Alignment (genomic DNA sequence = upper lines): AAAAATGGCA AAGAGTGGCA TTTTGGTAAT TGTTTCAGCT CTTGTTGTTC TTGCAGTTTG 1684 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAAATGGCA AAGAGTGGCA TTTTGGTAAT TGTTTCAGCT CTTGTTGTTC TTGCAGTTTG 60 TGGTGTTTTT GCTGAGGAGA ACGAATATGT GTTGACTTTG GACCATTCTA ACCTCACTGA 1744 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGTGTTTTT GCTGAGGAGA ACGAATATGT GTTGACTTTG GACCATTCTA ACCTCACTGA 120 GACTGTTGCT AAGCACAACT TCATTGTTGT TGAATTCTAT GCACCTTGGT AAGTCATCTG 1804 |||||||||| |||||||||| |||||||||| |||||||||| |||||||| GACTGTTGCT AAGCACAACT TCATTGTTGT TGAATTCTAT GCACCTTG.. .......... 168 CTGTTTTTTT TTCTATTTAT TTTCTTGAAA AAAGTTCATT TTTTTTGCTT GTTGAATCTG 1864 .......... .......... .......... .......... .......... .......... 168 TATGTGCAGA ATGTAATGAA TGATTGGATG TAAGGGGTTT TGTTTTTGAT CTGTTTTTTT 1924 .......... .......... .......... .......... .......... .......... 168 TTTGTTATTT TAGTGAATTT TTGCTGTAAT TTTTTTGTTT TCATAAGCTG TGTGAGGAAT 1984 .......... .......... .......... .......... .......... .......... 168 GCATCAAGAT CAGTTCTTTA TGTTAATTTG TCTTAAAGGG TTCATCAAGG ACCCCTTTGG 2044 .......... .......... .......... .......... .......... .......... 168 CTCTACTTTG CTGTTCCTGT TTTTTTTTTT TTTTTGGAGT TTTATCTTTT TGCTGGTTTC 2104 .......... .......... .......... .......... .......... .......... 168 TCTGGCTTTA GAAACTGCAT GTGCAGAAGA TAATCAATGA CTGGTTCTTT TTCTTTTGGG 2164 .......... .......... .......... .......... .......... .......... 168 GAATTTAAGG TTTTGTTATG TAAATGGTTT TTTTTTCTGA TTTTTCTGCT GTAATTTTTT 2224 .......... .......... .......... .......... .......... .......... 168 ATTTTACACA TTGACTTGAA TTTGTCTGAA AGGGTTTTTC AAGGATCCTT TTGTTGATGG 2284 .......... .......... .......... .......... .......... .......... 168 ATGTATTTTG ATTTGTGGAT TGATTGAGGT TTTAAGGCTT TTTCTGTAAA AAGCTTCTTC 2344 .......... .......... .......... .......... .......... .......... 168 TTTTAATTCA TGGTTGATGC TTCTAGAATC TGGATTTGCT TGATGAGTTC TAGGTTATAA 2404 .......... .......... .......... .......... .......... .......... 168 GGTTTCCTCT TTTTATTTAA TTTGCTGCTT GTTTTTTGGT ATTTAAAATC TCTGTGTCCA 2464 .......... .......... .......... .......... .......... .......... 168 GAATTTTACA AAAATATTAA TAAATCTGGA TTTGTCTTTG TGTTCTGTGT TGCTGCAAGT 2524 .......... .......... .......... .......... .......... .......... 168 TAATGGTTTT TCCATTTCTG TGACAGTCTA GTCAATTGGA ATGTAAAATC TGTTTTTCTA 2584 .......... .......... .......... .......... .......... .......... 168 TTTTTGTGTA TGTATTTGGA TCTATGTCAA GAGGTTCCAG TGATCTGTGT TAATAGAAGT 2644 .......... .......... .......... .......... .......... .......... 168 GATTCTTTTA GCCAAATTGT CTTCTTGTTA TGTGTAGTGG TGGATCCAAT GTAATGGTAC 2704 .......... .......... .......... .......... .......... .......... 168 CAGGTTCATC TGAACCTAAT AGTTTCGACT CGGAGCATAA ATTTATGTGT AGGAATTCAC 2764 .......... .......... .......... .......... .......... .......... 168 TAAAATTGCA ATAAATAGTA GACATGAATG ATGTTGATGA CGACATGCTT GAGATGGTTG 2824 .......... .......... .......... .......... .......... .......... 168 TATTAATAGC TTGCATTAGT TTCGATCTTT TCTATGGTAT CAATTCCCAT AGTTATACGT 2884 .......... .......... .......... .......... .......... .......... 168 TGTTGTCGAA ATGTTTATTT AGTTATTCTT TGACATGAAA TTTTTTTACT TTATGAGTAA 2944 .......... .......... .......... .......... .......... .......... 168 CTGATAATAT ACTTGCAATT ACAGGTGTGG ACACTGTAAG AGTCTTGCTC CTGAGGTACA 3004 |||||| |||||||||| |||||||||| ||||| .......... .......... ....GTGTGG ACACTGTAAG AGTCTTGCTC CTGAG..... 199 CTTTCTTCTA TACAGTGCTT AATGAAGGAA GGAATATCAT TTTTCTCTGT CATTATGTTT 3064 .......... .......... .......... .......... .......... .......... 199 TTTCTTGGCA TTTTCAATCT ATGCAACTGA TTTAATGTTA AATTATGTTT CTTTCCAGTA 3124 || .......... .......... .......... .......... .......... ........TA 201 TGAAAAAGCT GCCTCAGAGC TGAGTAGTCA TGACCCTCCA ATTGTTCTAG CTAAGTATGA 3184 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAAAAAGCT GCCTCAGAGC TGAGTAGTCA TGACCCTCCA ATTGTTCTAG CTAAGTATGA 261 TGCAAATGAT GAAGCCAATA GAGAACTTTC AAAACAGTAC GAGATCCAGG GTTTCCCAAC 3244 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCAAATGAT GAAGCCAATA GAGAACTTTC AAAACAGTAC GAGATCCAGG GTTTCCCAAC 321 TATTAAGATA TTGAGAGATG GAGGAAAGAA AGTTCAAGAC TATAACGGTC CTCGTGAAGC 3304 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATTAAGATA TTGAGAGATG GAGGAAAGAA AGTTCAAGAC TATAACGGTC CTCGTGAAGC 381 AGCTGGTATT GTATCCTACT TGAAGAAACA AGTGGGTCCT GCATCTGCTG AAATCAAGTC 3364 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCTGGTATT GTATCCTACT TGAAGAAACA AGTGGGTCCT GCATCTGCTG AAATCAAGTC 441 GAAGGAAGAT GCCACAAACC TTATTGATGA GAAAAGTATC TTT 3407 ||| |||||| |||||||||| |||||||||| |||||||||| ||| GAAAGAAGAT GCCACAAACC TTATTGATGA GAAAAGTATC TTT 484 hqPGS_C06HBa0054K13.1-11+_SGN-E313518+ (1625 1792,2969 2999,3123 3407) ******************************************************************************** EST sequence 82 +strand 482 n (File: SGN-E287922+) 1 AAAAATGGCA AAGAGTGGCA TTTTGGTAAT TGTTTCAGCT CTTGTTGTTC TTGCAGTTTG 61 TGGTGTTTTT GCTGAGGAGA ACGAATATGT GTTGACTTTG GACCATTCTA ACCTCACTGA 121 GACTGTTGCT AAGCACAACT TCATTGTTGT TGAATTCTAT GCACCTTGGT GTGGACACTG 181 TAAGAGTCTT GCTCCTGAGT ATGAAAAAGC TGCCTCAGAG CTGAGTAGTC ATGACCCTCC 241 AATTGTTCTA GCTAAGTATG ATGCAAATGA TGAAGCCAAT AGAGAACTTT CAAAACAGTA 301 CGAGATCCAG GGTTTCCCAA CTATTAAGAT ATTGAGAGAT GGAGGAAAGA AAGTTCAAGA 361 CTATAACGGT CCTCGTGAAG CAGCTGGTAT TGTATCCTAC TTGAAGAAAC AAGTGGGTCC 421 TGCATCTGCT GAAATCAAGT CGAAGGAAGA TGCCACAAAC CTTATTGATG AGAAAAGTAT 481 CT Predicted gene structure (within gDNA segment 1025 to 4015): Exon 1 1625 1792 ( 168 n); cDNA 1 168 ( 168 n); score: 1.000 Intron 1 1793 2968 (1176 n); Pd: 1.000 (s: 1.00), Pa: 0.997 (s: 0) Exon 2 2969 2999 ( 31 n); cDNA 169 199 ( 31 n); score: 1.000 Intron 2 3000 3122 ( 123 n); Pd: 0.917 (s: 0), Pa: 0.997 (s: 1.00) Exon 3 3123 3405 ( 283 n); cDNA 200 482 ( 283 n); score: 1.000 MATCH C06HBa0054K13.1-11+ SGN-E287922+ 1.000 482 1.000 C PGS_C06HBa0054K13.1-11+_SGN-E287922+ (1625 1792,2969 2999,3123 3405) Alignment (genomic DNA sequence = upper lines): AAAAATGGCA AAGAGTGGCA TTTTGGTAAT TGTTTCAGCT CTTGTTGTTC TTGCAGTTTG 1684 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAAATGGCA AAGAGTGGCA TTTTGGTAAT TGTTTCAGCT CTTGTTGTTC TTGCAGTTTG 60 TGGTGTTTTT GCTGAGGAGA ACGAATATGT GTTGACTTTG GACCATTCTA ACCTCACTGA 1744 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGTGTTTTT GCTGAGGAGA ACGAATATGT GTTGACTTTG GACCATTCTA ACCTCACTGA 120 GACTGTTGCT AAGCACAACT TCATTGTTGT TGAATTCTAT GCACCTTGGT AAGTCATCTG 1804 |||||||||| |||||||||| |||||||||| |||||||||| |||||||| GACTGTTGCT AAGCACAACT TCATTGTTGT TGAATTCTAT GCACCTTG.. .......... 168 CTGTTTTTTT TTCTATTTAT TTTCTTGAAA AAAGTTCATT TTTTTTGCTT GTTGAATCTG 1864 .......... .......... .......... .......... .......... .......... 168 TATGTGCAGA ATGTAATGAA TGATTGGATG TAAGGGGTTT TGTTTTTGAT CTGTTTTTTT 1924 .......... .......... .......... .......... .......... .......... 168 TTTGTTATTT TAGTGAATTT TTGCTGTAAT TTTTTTGTTT TCATAAGCTG TGTGAGGAAT 1984 .......... .......... .......... .......... .......... .......... 168 GCATCAAGAT CAGTTCTTTA TGTTAATTTG TCTTAAAGGG TTCATCAAGG ACCCCTTTGG 2044 .......... .......... .......... .......... .......... .......... 168 CTCTACTTTG CTGTTCCTGT TTTTTTTTTT TTTTTGGAGT TTTATCTTTT TGCTGGTTTC 2104 .......... .......... .......... .......... .......... .......... 168 TCTGGCTTTA GAAACTGCAT GTGCAGAAGA TAATCAATGA CTGGTTCTTT TTCTTTTGGG 2164 .......... .......... .......... .......... .......... .......... 168 GAATTTAAGG TTTTGTTATG TAAATGGTTT TTTTTTCTGA TTTTTCTGCT GTAATTTTTT 2224 .......... .......... .......... .......... .......... .......... 168 ATTTTACACA TTGACTTGAA TTTGTCTGAA AGGGTTTTTC AAGGATCCTT TTGTTGATGG 2284 .......... .......... .......... .......... .......... .......... 168 ATGTATTTTG ATTTGTGGAT TGATTGAGGT TTTAAGGCTT TTTCTGTAAA AAGCTTCTTC 2344 .......... .......... .......... .......... .......... .......... 168 TTTTAATTCA TGGTTGATGC TTCTAGAATC TGGATTTGCT TGATGAGTTC TAGGTTATAA 2404 .......... .......... .......... .......... .......... .......... 168 GGTTTCCTCT TTTTATTTAA TTTGCTGCTT GTTTTTTGGT ATTTAAAATC TCTGTGTCCA 2464 .......... .......... .......... .......... .......... .......... 168 GAATTTTACA AAAATATTAA TAAATCTGGA TTTGTCTTTG TGTTCTGTGT TGCTGCAAGT 2524 .......... .......... .......... .......... .......... .......... 168 TAATGGTTTT TCCATTTCTG TGACAGTCTA GTCAATTGGA ATGTAAAATC TGTTTTTCTA 2584 .......... .......... .......... .......... .......... .......... 168 TTTTTGTGTA TGTATTTGGA TCTATGTCAA GAGGTTCCAG TGATCTGTGT TAATAGAAGT 2644 .......... .......... .......... .......... .......... .......... 168 GATTCTTTTA GCCAAATTGT CTTCTTGTTA TGTGTAGTGG TGGATCCAAT GTAATGGTAC 2704 .......... .......... .......... .......... .......... .......... 168 CAGGTTCATC TGAACCTAAT AGTTTCGACT CGGAGCATAA ATTTATGTGT AGGAATTCAC 2764 .......... .......... .......... .......... .......... .......... 168 TAAAATTGCA ATAAATAGTA GACATGAATG ATGTTGATGA CGACATGCTT GAGATGGTTG 2824 .......... .......... .......... .......... .......... .......... 168 TATTAATAGC TTGCATTAGT TTCGATCTTT TCTATGGTAT CAATTCCCAT AGTTATACGT 2884 .......... .......... .......... .......... .......... .......... 168 TGTTGTCGAA ATGTTTATTT AGTTATTCTT TGACATGAAA TTTTTTTACT TTATGAGTAA 2944 .......... .......... .......... .......... .......... .......... 168 CTGATAATAT ACTTGCAATT ACAGGTGTGG ACACTGTAAG AGTCTTGCTC CTGAGGTACA 3004 |||||| |||||||||| |||||||||| ||||| .......... .......... ....GTGTGG ACACTGTAAG AGTCTTGCTC CTGAG..... 199 CTTTCTTCTA TACAGTGCTT AATGAAGGAA GGAATATCAT TTTTCTCTGT CATTATGTTT 3064 .......... .......... .......... .......... .......... .......... 199 TTTCTTGGCA TTTTCAATCT ATGCAACTGA TTTAATGTTA AATTATGTTT CTTTCCAGTA 3124 || .......... .......... .......... .......... .......... ........TA 201 TGAAAAAGCT GCCTCAGAGC TGAGTAGTCA TGACCCTCCA ATTGTTCTAG CTAAGTATGA 3184 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAAAAAGCT GCCTCAGAGC TGAGTAGTCA TGACCCTCCA ATTGTTCTAG CTAAGTATGA 261 TGCAAATGAT GAAGCCAATA GAGAACTTTC AAAACAGTAC GAGATCCAGG GTTTCCCAAC 3244 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCAAATGAT GAAGCCAATA GAGAACTTTC AAAACAGTAC GAGATCCAGG GTTTCCCAAC 321 TATTAAGATA TTGAGAGATG GAGGAAAGAA AGTTCAAGAC TATAACGGTC CTCGTGAAGC 3304 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATTAAGATA TTGAGAGATG GAGGAAAGAA AGTTCAAGAC TATAACGGTC CTCGTGAAGC 381 AGCTGGTATT GTATCCTACT TGAAGAAACA AGTGGGTCCT GCATCTGCTG AAATCAAGTC 3364 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCTGGTATT GTATCCTACT TGAAGAAACA AGTGGGTCCT GCATCTGCTG AAATCAAGTC 441 GAAGGAAGAT GCCACAAACC TTATTGATGA GAAAAGTATC T 3405 |||||||||| |||||||||| |||||||||| |||||||||| | GAAGGAAGAT GCCACAAACC TTATTGATGA GAAAAGTATC T 482 hqPGS_C06HBa0054K13.1-11+_SGN-E287922+ (1625 1792,2969 2999,3123 3405) ******************************************************************************** EST sequence 123 +strand 482 n (File: SGN-E311877+) 1 AAAAATGGCA AAGAGTGGCA TTTTGGTAAT TGTTTCAGCT CTTGTTGTTC TTGCAGTTTG 61 TGGTGTTTTT GCTGAGGAGA ACGAATATGT GTTGACTTTG GACCATTCTA ACCTCACTGA 121 GACTGTTGCT AAGCACAACT TCATTGTTGT TGAATTCTAT GCACCTTGGT GTGGACACTG 181 TAAGAGTCTT GCTCCTGAGT ATGAAAAAGC TGCCTCAGAG CTGAGTAGTC ATGACCCTCC 241 AATTGTTCTA GCTAAGTATG ATGCAAATGA TGAAGCCAAT AGAGAACTTT CAAAACAGTA 301 CGAGATCCAG GGTTTCCCAA CTATTAAGAT ATTGAGAGAT GGAGGAAAGA AAGTTCAAGA 361 CTATAACGGT CCTCGTGAAG CAGCTGGTAT TGTATCCTAC TTGAAGAAAC AAGTGGGTCC 421 TGCATCTGCT GAAATCAAGT CGAAGGAAGA TGCCACAAAC CTTATTGATG AGAAAAGTAT 481 CT Predicted gene structure (within gDNA segment 1025 to 4015): Exon 1 1625 1792 ( 168 n); cDNA 1 168 ( 168 n); score: 1.000 Intron 1 1793 2968 (1176 n); Pd: 1.000 (s: 1.00), Pa: 0.997 (s: 0) Exon 2 2969 2999 ( 31 n); cDNA 169 199 ( 31 n); score: 1.000 Intron 2 3000 3122 ( 123 n); Pd: 0.917 (s: 0), Pa: 0.997 (s: 1.00) Exon 3 3123 3405 ( 283 n); cDNA 200 482 ( 283 n); score: 1.000 MATCH C06HBa0054K13.1-11+ SGN-E311877+ 1.000 482 1.000 C PGS_C06HBa0054K13.1-11+_SGN-E311877+ (1625 1792,2969 2999,3123 3405) Alignment (genomic DNA sequence = upper lines): AAAAATGGCA AAGAGTGGCA TTTTGGTAAT TGTTTCAGCT CTTGTTGTTC TTGCAGTTTG 1684 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAAATGGCA AAGAGTGGCA TTTTGGTAAT TGTTTCAGCT CTTGTTGTTC TTGCAGTTTG 60 TGGTGTTTTT GCTGAGGAGA ACGAATATGT GTTGACTTTG GACCATTCTA ACCTCACTGA 1744 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGTGTTTTT GCTGAGGAGA ACGAATATGT GTTGACTTTG GACCATTCTA ACCTCACTGA 120 GACTGTTGCT AAGCACAACT TCATTGTTGT TGAATTCTAT GCACCTTGGT AAGTCATCTG 1804 |||||||||| |||||||||| |||||||||| |||||||||| |||||||| GACTGTTGCT AAGCACAACT TCATTGTTGT TGAATTCTAT GCACCTTG.. .......... 168 CTGTTTTTTT TTCTATTTAT TTTCTTGAAA AAAGTTCATT TTTTTTGCTT GTTGAATCTG 1864 .......... .......... .......... .......... .......... .......... 168 TATGTGCAGA ATGTAATGAA TGATTGGATG TAAGGGGTTT TGTTTTTGAT CTGTTTTTTT 1924 .......... .......... .......... .......... .......... .......... 168 TTTGTTATTT TAGTGAATTT TTGCTGTAAT TTTTTTGTTT TCATAAGCTG TGTGAGGAAT 1984 .......... .......... .......... .......... .......... .......... 168 GCATCAAGAT CAGTTCTTTA TGTTAATTTG TCTTAAAGGG TTCATCAAGG ACCCCTTTGG 2044 .......... .......... .......... .......... .......... .......... 168 CTCTACTTTG CTGTTCCTGT TTTTTTTTTT TTTTTGGAGT TTTATCTTTT TGCTGGTTTC 2104 .......... .......... .......... .......... .......... .......... 168 TCTGGCTTTA GAAACTGCAT GTGCAGAAGA TAATCAATGA CTGGTTCTTT TTCTTTTGGG 2164 .......... .......... .......... .......... .......... .......... 168 GAATTTAAGG TTTTGTTATG TAAATGGTTT TTTTTTCTGA TTTTTCTGCT GTAATTTTTT 2224 .......... .......... .......... .......... .......... .......... 168 ATTTTACACA TTGACTTGAA TTTGTCTGAA AGGGTTTTTC AAGGATCCTT TTGTTGATGG 2284 .......... .......... .......... .......... .......... .......... 168 ATGTATTTTG ATTTGTGGAT TGATTGAGGT TTTAAGGCTT TTTCTGTAAA AAGCTTCTTC 2344 .......... .......... .......... .......... .......... .......... 168 TTTTAATTCA TGGTTGATGC TTCTAGAATC TGGATTTGCT TGATGAGTTC TAGGTTATAA 2404 .......... .......... .......... .......... .......... .......... 168 GGTTTCCTCT TTTTATTTAA TTTGCTGCTT GTTTTTTGGT ATTTAAAATC TCTGTGTCCA 2464 .......... .......... .......... .......... .......... .......... 168 GAATTTTACA AAAATATTAA TAAATCTGGA TTTGTCTTTG TGTTCTGTGT TGCTGCAAGT 2524 .......... .......... .......... .......... .......... .......... 168 TAATGGTTTT TCCATTTCTG TGACAGTCTA GTCAATTGGA ATGTAAAATC TGTTTTTCTA 2584 .......... .......... .......... .......... .......... .......... 168 TTTTTGTGTA TGTATTTGGA TCTATGTCAA GAGGTTCCAG TGATCTGTGT TAATAGAAGT 2644 .......... .......... .......... .......... .......... .......... 168 GATTCTTTTA GCCAAATTGT CTTCTTGTTA TGTGTAGTGG TGGATCCAAT GTAATGGTAC 2704 .......... .......... .......... .......... .......... .......... 168 CAGGTTCATC TGAACCTAAT AGTTTCGACT CGGAGCATAA ATTTATGTGT AGGAATTCAC 2764 .......... .......... .......... .......... .......... .......... 168 TAAAATTGCA ATAAATAGTA GACATGAATG ATGTTGATGA CGACATGCTT GAGATGGTTG 2824 .......... .......... .......... .......... .......... .......... 168 TATTAATAGC TTGCATTAGT TTCGATCTTT TCTATGGTAT CAATTCCCAT AGTTATACGT 2884 .......... .......... .......... .......... .......... .......... 168 TGTTGTCGAA ATGTTTATTT AGTTATTCTT TGACATGAAA TTTTTTTACT TTATGAGTAA 2944 .......... .......... .......... .......... .......... .......... 168 CTGATAATAT ACTTGCAATT ACAGGTGTGG ACACTGTAAG AGTCTTGCTC CTGAGGTACA 3004 |||||| |||||||||| |||||||||| ||||| .......... .......... ....GTGTGG ACACTGTAAG AGTCTTGCTC CTGAG..... 199 CTTTCTTCTA TACAGTGCTT AATGAAGGAA GGAATATCAT TTTTCTCTGT CATTATGTTT 3064 .......... .......... .......... .......... .......... .......... 199 TTTCTTGGCA TTTTCAATCT ATGCAACTGA TTTAATGTTA AATTATGTTT CTTTCCAGTA 3124 || .......... .......... .......... .......... .......... ........TA 201 TGAAAAAGCT GCCTCAGAGC TGAGTAGTCA TGACCCTCCA ATTGTTCTAG CTAAGTATGA 3184 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAAAAAGCT GCCTCAGAGC TGAGTAGTCA TGACCCTCCA ATTGTTCTAG CTAAGTATGA 261 TGCAAATGAT GAAGCCAATA GAGAACTTTC AAAACAGTAC GAGATCCAGG GTTTCCCAAC 3244 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCAAATGAT GAAGCCAATA GAGAACTTTC AAAACAGTAC GAGATCCAGG GTTTCCCAAC 321 TATTAAGATA TTGAGAGATG GAGGAAAGAA AGTTCAAGAC TATAACGGTC CTCGTGAAGC 3304 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATTAAGATA TTGAGAGATG GAGGAAAGAA AGTTCAAGAC TATAACGGTC CTCGTGAAGC 381 AGCTGGTATT GTATCCTACT TGAAGAAACA AGTGGGTCCT GCATCTGCTG AAATCAAGTC 3364 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCTGGTATT GTATCCTACT TGAAGAAACA AGTGGGTCCT GCATCTGCTG AAATCAAGTC 441 GAAGGAAGAT GCCACAAACC TTATTGATGA GAAAAGTATC T 3405 |||||||||| |||||||||| |||||||||| |||||||||| | GAAGGAAGAT GCCACAAACC TTATTGATGA GAAAAGTATC T 482 hqPGS_C06HBa0054K13.1-11+_SGN-E311877+ (1625 1792,2969 2999,3123 3405) ******************************************************************************** EST sequence 84 +strand 436 n (File: SGN-E283708+) 1 AAAAATGGCA AAGAGTGGCA TTTTGGTAAT TGTTTCAGCT CTTGTTGTTC TTGCAGTTTG 61 TGGTGTTTTT GCTGAGGAGA ACGAATATGT GTTGACTTTG GACCATTCTA ACCTCACTGA 121 GACTGTTGCT AAGCACAACT TCATTGTTGT TGAATTCTAT GCACCTTGGT GTGGACACTG 181 TAAGAGTCTT GCTCCTGAGT ATGAAAAAGC TGCCTCAGAG CTGAGTAGTC ATGACCCTCC 241 AATTGTTCTA GCTAAGTATG ATGCAAATGA TGAAGCCAAT AGAGAACTTT CAAAACAGTA 301 CGAGATCCAG GGTTTCCCAA CTATTAAGAT ATTGAGAGAT GGAGGAAAGA AAGTTCAAGA 361 CTATAACGGT CCTCGTGAAG CAGCTGGTAT TGTATCCTAC TTGAAGAAAC AAGTGGGTCC 421 TGCATCTGCT GAAATC Predicted gene structure (within gDNA segment 1025 to 3969): Exon 1 1625 1792 ( 168 n); cDNA 1 168 ( 168 n); score: 1.000 Intron 1 1793 2968 (1176 n); Pd: 1.000 (s: 1.00), Pa: 0.997 (s: 0) Exon 2 2969 2999 ( 31 n); cDNA 169 199 ( 31 n); score: 1.000 Intron 2 3000 3122 ( 123 n); Pd: 0.917 (s: 0), Pa: 0.997 (s: 1.00) Exon 3 3123 3359 ( 237 n); cDNA 200 436 ( 237 n); score: 1.000 MATCH C06HBa0054K13.1-11+ SGN-E283708+ 1.000 436 1.000 C PGS_C06HBa0054K13.1-11+_SGN-E283708+ (1625 1792,2969 2999,3123 3359) Alignment (genomic DNA sequence = upper lines): AAAAATGGCA AAGAGTGGCA TTTTGGTAAT TGTTTCAGCT CTTGTTGTTC TTGCAGTTTG 1684 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAAATGGCA AAGAGTGGCA TTTTGGTAAT TGTTTCAGCT CTTGTTGTTC TTGCAGTTTG 60 TGGTGTTTTT GCTGAGGAGA ACGAATATGT GTTGACTTTG GACCATTCTA ACCTCACTGA 1744 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGTGTTTTT GCTGAGGAGA ACGAATATGT GTTGACTTTG GACCATTCTA ACCTCACTGA 120 GACTGTTGCT AAGCACAACT TCATTGTTGT TGAATTCTAT GCACCTTGGT AAGTCATCTG 1804 |||||||||| |||||||||| |||||||||| |||||||||| |||||||| GACTGTTGCT AAGCACAACT TCATTGTTGT TGAATTCTAT GCACCTTG.. .......... 168 CTGTTTTTTT TTCTATTTAT TTTCTTGAAA AAAGTTCATT TTTTTTGCTT GTTGAATCTG 1864 .......... .......... .......... .......... .......... .......... 168 TATGTGCAGA ATGTAATGAA TGATTGGATG TAAGGGGTTT TGTTTTTGAT CTGTTTTTTT 1924 .......... .......... .......... .......... .......... .......... 168 TTTGTTATTT TAGTGAATTT TTGCTGTAAT TTTTTTGTTT TCATAAGCTG TGTGAGGAAT 1984 .......... .......... .......... .......... .......... .......... 168 GCATCAAGAT CAGTTCTTTA TGTTAATTTG TCTTAAAGGG TTCATCAAGG ACCCCTTTGG 2044 .......... .......... .......... .......... .......... .......... 168 CTCTACTTTG CTGTTCCTGT TTTTTTTTTT TTTTTGGAGT TTTATCTTTT TGCTGGTTTC 2104 .......... .......... .......... .......... .......... .......... 168 TCTGGCTTTA GAAACTGCAT GTGCAGAAGA TAATCAATGA CTGGTTCTTT TTCTTTTGGG 2164 .......... .......... .......... .......... .......... .......... 168 GAATTTAAGG TTTTGTTATG TAAATGGTTT TTTTTTCTGA TTTTTCTGCT GTAATTTTTT 2224 .......... .......... .......... .......... .......... .......... 168 ATTTTACACA TTGACTTGAA TTTGTCTGAA AGGGTTTTTC AAGGATCCTT TTGTTGATGG 2284 .......... .......... .......... .......... .......... .......... 168 ATGTATTTTG ATTTGTGGAT TGATTGAGGT TTTAAGGCTT TTTCTGTAAA AAGCTTCTTC 2344 .......... .......... .......... .......... .......... .......... 168 TTTTAATTCA TGGTTGATGC TTCTAGAATC TGGATTTGCT TGATGAGTTC TAGGTTATAA 2404 .......... .......... .......... .......... .......... .......... 168 GGTTTCCTCT TTTTATTTAA TTTGCTGCTT GTTTTTTGGT ATTTAAAATC TCTGTGTCCA 2464 .......... .......... .......... .......... .......... .......... 168 GAATTTTACA AAAATATTAA TAAATCTGGA TTTGTCTTTG TGTTCTGTGT TGCTGCAAGT 2524 .......... .......... .......... .......... .......... .......... 168 TAATGGTTTT TCCATTTCTG TGACAGTCTA GTCAATTGGA ATGTAAAATC TGTTTTTCTA 2584 .......... .......... .......... .......... .......... .......... 168 TTTTTGTGTA TGTATTTGGA TCTATGTCAA GAGGTTCCAG TGATCTGTGT TAATAGAAGT 2644 .......... .......... .......... .......... .......... .......... 168 GATTCTTTTA GCCAAATTGT CTTCTTGTTA TGTGTAGTGG TGGATCCAAT GTAATGGTAC 2704 .......... .......... .......... .......... .......... .......... 168 CAGGTTCATC TGAACCTAAT AGTTTCGACT CGGAGCATAA ATTTATGTGT AGGAATTCAC 2764 .......... .......... .......... .......... .......... .......... 168 TAAAATTGCA ATAAATAGTA GACATGAATG ATGTTGATGA CGACATGCTT GAGATGGTTG 2824 .......... .......... .......... .......... .......... .......... 168 TATTAATAGC TTGCATTAGT TTCGATCTTT TCTATGGTAT CAATTCCCAT AGTTATACGT 2884 .......... .......... .......... .......... .......... .......... 168 TGTTGTCGAA ATGTTTATTT AGTTATTCTT TGACATGAAA TTTTTTTACT TTATGAGTAA 2944 .......... .......... .......... .......... .......... .......... 168 CTGATAATAT ACTTGCAATT ACAGGTGTGG ACACTGTAAG AGTCTTGCTC CTGAGGTACA 3004 |||||| |||||||||| |||||||||| ||||| .......... .......... ....GTGTGG ACACTGTAAG AGTCTTGCTC CTGAG..... 199 CTTTCTTCTA TACAGTGCTT AATGAAGGAA GGAATATCAT TTTTCTCTGT CATTATGTTT 3064 .......... .......... .......... .......... .......... .......... 199 TTTCTTGGCA TTTTCAATCT ATGCAACTGA TTTAATGTTA AATTATGTTT CTTTCCAGTA 3124 || .......... .......... .......... .......... .......... ........TA 201 TGAAAAAGCT GCCTCAGAGC TGAGTAGTCA TGACCCTCCA ATTGTTCTAG CTAAGTATGA 3184 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAAAAAGCT GCCTCAGAGC TGAGTAGTCA TGACCCTCCA ATTGTTCTAG CTAAGTATGA 261 TGCAAATGAT GAAGCCAATA GAGAACTTTC AAAACAGTAC GAGATCCAGG GTTTCCCAAC 3244 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCAAATGAT GAAGCCAATA GAGAACTTTC AAAACAGTAC GAGATCCAGG GTTTCCCAAC 321 TATTAAGATA TTGAGAGATG GAGGAAAGAA AGTTCAAGAC TATAACGGTC CTCGTGAAGC 3304 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATTAAGATA TTGAGAGATG GAGGAAAGAA AGTTCAAGAC TATAACGGTC CTCGTGAAGC 381 AGCTGGTATT GTATCCTACT TGAAGAAACA AGTGGGTCCT GCATCTGCTG AAATC 3359 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||| AGCTGGTATT GTATCCTACT TGAAGAAACA AGTGGGTCCT GCATCTGCTG AAATC 436 hqPGS_C06HBa0054K13.1-11+_SGN-E283708+ (1625 1792,2969 2999,3123 3359) ******************************************************************************** EST sequence 7 +strand 424 n (File: SGN-E330586+) 1 AAAAATGGCA AAGAGTGGCA TTTTGGTAAT TGTTTCAGCT CTTGTTGTTC TTGCAGTTTG 61 TGGTGTTTTT GCTGAGGAGA ACGAATATGT GTTGACTTTG GACCATTCTA ACCTCACTGA 121 GACTGTTGCT AAGCACAACT TCATTGTTGT TGAATTCTAT GCACCTTGGT GTGGACACTG 181 TAAGAGTCTT GCTCCTGAGT ATGAAAAAGC TGCCTCAGAG CTGAGTAGTC ATGACCCTCC 241 AATTGTTCTA GCTAAGTATG ATGCAAATGA TGAAGCCAAT AGAGAACTTT CAAAACAGTA 301 CGAGATCCAG GGTTTCCCAA CTATTAAGAT ATTGAGAGAT GGAGGAAAGA AAGTTCAAGA 361 CTTTAACGGT CCTCGTGGAA GCAGATGGTA TTGTATCCTA CTTGGAAGAA ACAAGTGGGT 421 CCTG Predicted gene structure (within gDNA segment 1025 to 4515): Exon 1 1625 1792 ( 168 n); cDNA 1 168 ( 168 n); score: 1.000 Intron 1 1793 2968 (1176 n); Pd: 1.000 (s: 1.00), Pa: 0.997 (s: 0) Exon 2 2969 2999 ( 31 n); cDNA 169 199 ( 31 n); score: 1.000 Intron 2 3000 3122 ( 123 n); Pd: 0.917 (s: 0), Pa: 0.997 (s: 1.00) Exon 3 3123 3345 ( 223 n); cDNA 200 424 ( 225 n); score: 0.969 MATCH C06HBa0054K13.1-11+ SGN-E330586+ 0.982 422 0.995 C PGS_C06HBa0054K13.1-11+_SGN-E330586+ (1625 1792,2969 2999,3123 3345) Alignment (genomic DNA sequence = upper lines): AAAAATGGCA AAGAGTGGCA TTTTGGTAAT TGTTTCAGCT CTTGTTGTTC TTGCAGTTTG 1684 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAAATGGCA AAGAGTGGCA TTTTGGTAAT TGTTTCAGCT CTTGTTGTTC TTGCAGTTTG 60 TGGTGTTTTT GCTGAGGAGA ACGAATATGT GTTGACTTTG GACCATTCTA ACCTCACTGA 1744 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGTGTTTTT GCTGAGGAGA ACGAATATGT GTTGACTTTG GACCATTCTA ACCTCACTGA 120 GACTGTTGCT AAGCACAACT TCATTGTTGT TGAATTCTAT GCACCTTGGT AAGTCATCTG 1804 |||||||||| |||||||||| |||||||||| |||||||||| |||||||| GACTGTTGCT AAGCACAACT TCATTGTTGT TGAATTCTAT GCACCTTG.. .......... 168 CTGTTTTTTT TTCTATTTAT TTTCTTGAAA AAAGTTCATT TTTTTTGCTT GTTGAATCTG 1864 .......... .......... .......... .......... .......... .......... 168 TATGTGCAGA ATGTAATGAA TGATTGGATG TAAGGGGTTT TGTTTTTGAT CTGTTTTTTT 1924 .......... .......... .......... .......... .......... .......... 168 TTTGTTATTT TAGTGAATTT TTGCTGTAAT TTTTTTGTTT TCATAAGCTG TGTGAGGAAT 1984 .......... .......... .......... .......... .......... .......... 168 GCATCAAGAT CAGTTCTTTA TGTTAATTTG TCTTAAAGGG TTCATCAAGG ACCCCTTTGG 2044 .......... .......... .......... .......... .......... .......... 168 CTCTACTTTG CTGTTCCTGT TTTTTTTTTT TTTTTGGAGT TTTATCTTTT TGCTGGTTTC 2104 .......... .......... .......... .......... .......... .......... 168 TCTGGCTTTA GAAACTGCAT GTGCAGAAGA TAATCAATGA CTGGTTCTTT TTCTTTTGGG 2164 .......... .......... .......... .......... .......... .......... 168 GAATTTAAGG TTTTGTTATG TAAATGGTTT TTTTTTCTGA TTTTTCTGCT GTAATTTTTT 2224 .......... .......... .......... .......... .......... .......... 168 ATTTTACACA TTGACTTGAA TTTGTCTGAA AGGGTTTTTC AAGGATCCTT TTGTTGATGG 2284 .......... .......... .......... .......... .......... .......... 168 ATGTATTTTG ATTTGTGGAT TGATTGAGGT TTTAAGGCTT TTTCTGTAAA AAGCTTCTTC 2344 .......... .......... .......... .......... .......... .......... 168 TTTTAATTCA TGGTTGATGC TTCTAGAATC TGGATTTGCT TGATGAGTTC TAGGTTATAA 2404 .......... .......... .......... .......... .......... .......... 168 GGTTTCCTCT TTTTATTTAA TTTGCTGCTT GTTTTTTGGT ATTTAAAATC TCTGTGTCCA 2464 .......... .......... .......... .......... .......... .......... 168 GAATTTTACA AAAATATTAA TAAATCTGGA TTTGTCTTTG TGTTCTGTGT TGCTGCAAGT 2524 .......... .......... .......... .......... .......... .......... 168 TAATGGTTTT TCCATTTCTG TGACAGTCTA GTCAATTGGA ATGTAAAATC TGTTTTTCTA 2584 .......... .......... .......... .......... .......... .......... 168 TTTTTGTGTA TGTATTTGGA TCTATGTCAA GAGGTTCCAG TGATCTGTGT TAATAGAAGT 2644 .......... .......... .......... .......... .......... .......... 168 GATTCTTTTA GCCAAATTGT CTTCTTGTTA TGTGTAGTGG TGGATCCAAT GTAATGGTAC 2704 .......... .......... .......... .......... .......... .......... 168 CAGGTTCATC TGAACCTAAT AGTTTCGACT CGGAGCATAA ATTTATGTGT AGGAATTCAC 2764 .......... .......... .......... .......... .......... .......... 168 TAAAATTGCA ATAAATAGTA GACATGAATG ATGTTGATGA CGACATGCTT GAGATGGTTG 2824 .......... .......... .......... .......... .......... .......... 168 TATTAATAGC TTGCATTAGT TTCGATCTTT TCTATGGTAT CAATTCCCAT AGTTATACGT 2884 .......... .......... .......... .......... .......... .......... 168 TGTTGTCGAA ATGTTTATTT AGTTATTCTT TGACATGAAA TTTTTTTACT TTATGAGTAA 2944 .......... .......... .......... .......... .......... .......... 168 CTGATAATAT ACTTGCAATT ACAGGTGTGG ACACTGTAAG AGTCTTGCTC CTGAGGTACA 3004 |||||| |||||||||| |||||||||| ||||| .......... .......... ....GTGTGG ACACTGTAAG AGTCTTGCTC CTGAG..... 199 CTTTCTTCTA TACAGTGCTT AATGAAGGAA GGAATATCAT TTTTCTCTGT CATTATGTTT 3064 .......... .......... .......... .......... .......... .......... 199 TTTCTTGGCA TTTTCAATCT ATGCAACTGA TTTAATGTTA AATTATGTTT CTTTCCAGTA 3124 || .......... .......... .......... .......... .......... ........TA 201 TGAAAAAGCT GCCTCAGAGC TGAGTAGTCA TGACCCTCCA ATTGTTCTAG CTAAGTATGA 3184 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAAAAAGCT GCCTCAGAGC TGAGTAGTCA TGACCCTCCA ATTGTTCTAG CTAAGTATGA 261 TGCAAATGAT GAAGCCAATA GAGAACTTTC AAAACAGTAC GAGATCCAGG GTTTCCCAAC 3244 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCAAATGAT GAAGCCAATA GAGAACTTTC AAAACAGTAC GAGATCCAGG GTTTCCCAAC 321 TATTAAGATA TTGAGAGATG GAGGAAAGAA AGTTCAAGAC TATAACGGTC CTCGT-GAAG 3303 |||||||||| |||||||||| |||||||||| |||||||||| | |||||||| ||||| |||| TATTAAGATA TTGAGAGATG GAGGAAAGAA AGTTCAAGAC TTTAACGGTC CTCGTGGAAG 381 CAGCTGGTAT TGTATCCTAC TT-GAAGAAA CAAGTGGGTC CTG 3345 ||| |||||| |||||||||| || ||||||| |||||||||| ||| CAGATGGTAT TGTATCCTAC TTGGAAGAAA CAAGTGGGTC CTG 424 hqPGS_C06HBa0054K13.1-11+_SGN-E330586+ (1625 1792,2969 2999,3123 3345) ******************************************************************************** EST sequence 6 +strand 418 n (File: SGN-E300787+) 1 AAAAATGGCT AATAGTGGCA TTTTGGTAAT TGCTTCAGCT CTTGTTGTTC TTGCAGTTTG 61 TGGTGTTTTT GCTGAGGAGA ACGAATATGT GTTGACTTTG GACCATTCTA ACCTCACTGA 121 GACTGTTGCT AAGCACAACT TCATTGTTGT TGAATTCTAT GCACCTTGGT GTGGACACTG 181 TAAGAGTCTT GCTCCTGAGT ATGAAAAAGC TGCCTCAGAG CTGAGTTGTC ATGACCCTCC 241 AATTGTTCTA GCTAAGTATG ATGCAAATGA TGAAGCCAAT AGAGAACTTT CAAAACAGTA 301 CGAGATCCAC GGTTTCCCAA CTATTAAGAT ATTGCGAGAT GGAGGAAAGA AAGCTCAAGA 361 CTATAACGGG CCTCGTGAAG CAGCTGGTAT TGTATCCTAC TTGAAGAAAC AAGTGGGT Predicted gene structure (within gDNA segment 908 to 3951): Exon 1 1625 1792 ( 168 n); cDNA 1 168 ( 168 n); score: 0.982 Intron 1 1793 2968 (1176 n); Pd: 1.000 (s: 1.00), Pa: 0.997 (s: 0) Exon 2 2969 2999 ( 31 n); cDNA 169 199 ( 31 n); score: 1.000 Intron 2 3000 3122 ( 123 n); Pd: 0.917 (s: 0), Pa: 0.997 (s: 0.98) Exon 3 3123 3341 ( 219 n); cDNA 200 418 ( 219 n); score: 0.977 MATCH C06HBa0054K13.1-11+ SGN-E300787+ 0.979 418 1.000 C PGS_C06HBa0054K13.1-11+_SGN-E300787+ (1625 1792,2969 2999,3123 3341) Alignment (genomic DNA sequence = upper lines): AAAAATGGCA AAGAGTGGCA TTTTGGTAAT TGTTTCAGCT CTTGTTGTTC TTGCAGTTTG 1684 ||||||||| || ||||||| |||||||||| || ||||||| |||||||||| |||||||||| AAAAATGGCT AATAGTGGCA TTTTGGTAAT TGCTTCAGCT CTTGTTGTTC TTGCAGTTTG 60 TGGTGTTTTT GCTGAGGAGA ACGAATATGT GTTGACTTTG GACCATTCTA ACCTCACTGA 1744 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGTGTTTTT GCTGAGGAGA ACGAATATGT GTTGACTTTG GACCATTCTA ACCTCACTGA 120 GACTGTTGCT AAGCACAACT TCATTGTTGT TGAATTCTAT GCACCTTGGT AAGTCATCTG 1804 |||||||||| |||||||||| |||||||||| |||||||||| |||||||| GACTGTTGCT AAGCACAACT TCATTGTTGT TGAATTCTAT GCACCTTG.. .......... 168 CTGTTTTTTT TTCTATTTAT TTTCTTGAAA AAAGTTCATT TTTTTTGCTT GTTGAATCTG 1864 .......... .......... .......... .......... .......... .......... 168 TATGTGCAGA ATGTAATGAA TGATTGGATG TAAGGGGTTT TGTTTTTGAT CTGTTTTTTT 1924 .......... .......... .......... .......... .......... .......... 168 TTTGTTATTT TAGTGAATTT TTGCTGTAAT TTTTTTGTTT TCATAAGCTG TGTGAGGAAT 1984 .......... .......... .......... .......... .......... .......... 168 GCATCAAGAT CAGTTCTTTA TGTTAATTTG TCTTAAAGGG TTCATCAAGG ACCCCTTTGG 2044 .......... .......... .......... .......... .......... .......... 168 CTCTACTTTG CTGTTCCTGT TTTTTTTTTT TTTTTGGAGT TTTATCTTTT TGCTGGTTTC 2104 .......... .......... .......... .......... .......... .......... 168 TCTGGCTTTA GAAACTGCAT GTGCAGAAGA TAATCAATGA CTGGTTCTTT TTCTTTTGGG 2164 .......... .......... .......... .......... .......... .......... 168 GAATTTAAGG TTTTGTTATG TAAATGGTTT TTTTTTCTGA TTTTTCTGCT GTAATTTTTT 2224 .......... .......... .......... .......... .......... .......... 168 ATTTTACACA TTGACTTGAA TTTGTCTGAA AGGGTTTTTC AAGGATCCTT TTGTTGATGG 2284 .......... .......... .......... .......... .......... .......... 168 ATGTATTTTG ATTTGTGGAT TGATTGAGGT TTTAAGGCTT TTTCTGTAAA AAGCTTCTTC 2344 .......... .......... .......... .......... .......... .......... 168 TTTTAATTCA TGGTTGATGC TTCTAGAATC TGGATTTGCT TGATGAGTTC TAGGTTATAA 2404 .......... .......... .......... .......... .......... .......... 168 GGTTTCCTCT TTTTATTTAA TTTGCTGCTT GTTTTTTGGT ATTTAAAATC TCTGTGTCCA 2464 .......... .......... .......... .......... .......... .......... 168 GAATTTTACA AAAATATTAA TAAATCTGGA TTTGTCTTTG TGTTCTGTGT TGCTGCAAGT 2524 .......... .......... .......... .......... .......... .......... 168 TAATGGTTTT TCCATTTCTG TGACAGTCTA GTCAATTGGA ATGTAAAATC TGTTTTTCTA 2584 .......... .......... .......... .......... .......... .......... 168 TTTTTGTGTA TGTATTTGGA TCTATGTCAA GAGGTTCCAG TGATCTGTGT TAATAGAAGT 2644 .......... .......... .......... .......... .......... .......... 168 GATTCTTTTA GCCAAATTGT CTTCTTGTTA TGTGTAGTGG TGGATCCAAT GTAATGGTAC 2704 .......... .......... .......... .......... .......... .......... 168 CAGGTTCATC TGAACCTAAT AGTTTCGACT CGGAGCATAA ATTTATGTGT AGGAATTCAC 2764 .......... .......... .......... .......... .......... .......... 168 TAAAATTGCA ATAAATAGTA GACATGAATG ATGTTGATGA CGACATGCTT GAGATGGTTG 2824 .......... .......... .......... .......... .......... .......... 168 TATTAATAGC TTGCATTAGT TTCGATCTTT TCTATGGTAT CAATTCCCAT AGTTATACGT 2884 .......... .......... .......... .......... .......... .......... 168 TGTTGTCGAA ATGTTTATTT AGTTATTCTT TGACATGAAA TTTTTTTACT TTATGAGTAA 2944 .......... .......... .......... .......... .......... .......... 168 CTGATAATAT ACTTGCAATT ACAGGTGTGG ACACTGTAAG AGTCTTGCTC CTGAGGTACA 3004 |||||| |||||||||| |||||||||| ||||| .......... .......... ....GTGTGG ACACTGTAAG AGTCTTGCTC CTGAG..... 199 CTTTCTTCTA TACAGTGCTT AATGAAGGAA GGAATATCAT TTTTCTCTGT CATTATGTTT 3064 .......... .......... .......... .......... .......... .......... 199 TTTCTTGGCA TTTTCAATCT ATGCAACTGA TTTAATGTTA AATTATGTTT CTTTCCAGTA 3124 || .......... .......... .......... .......... .......... ........TA 201 TGAAAAAGCT GCCTCAGAGC TGAGTAGTCA TGACCCTCCA ATTGTTCTAG CTAAGTATGA 3184 |||||||||| |||||||||| ||||| |||| |||||||||| |||||||||| |||||||||| TGAAAAAGCT GCCTCAGAGC TGAGTTGTCA TGACCCTCCA ATTGTTCTAG CTAAGTATGA 261 TGCAAATGAT GAAGCCAATA GAGAACTTTC AAAACAGTAC GAGATCCAGG GTTTCCCAAC 3244 |||||||||| |||||||||| |||||||||| |||||||||| |||||||| | |||||||||| TGCAAATGAT GAAGCCAATA GAGAACTTTC AAAACAGTAC GAGATCCACG GTTTCCCAAC 321 TATTAAGATA TTGAGAGATG GAGGAAAGAA AGTTCAAGAC TATAACGGTC CTCGTGAAGC 3304 |||||||||| ||| |||||| |||||||||| || ||||||| |||||||| | |||||||||| TATTAAGATA TTGCGAGATG GAGGAAAGAA AGCTCAAGAC TATAACGGGC CTCGTGAAGC 381 AGCTGGTATT GTATCCTACT TGAAGAAACA AGTGGGT 3341 |||||||||| |||||||||| |||||||||| ||||||| AGCTGGTATT GTATCCTACT TGAAGAAACA AGTGGGT 418 hqPGS_C06HBa0054K13.1-11+_SGN-E300787+ (1625 1792,2969 2999,3123 3341) ******************************************************************************** EST sequence 72 +strand 306 n (File: SGN-E299009+) 1 AAAAATGGCA AAGAGTGGCA TTTTGGTAAT TGTTTCAGCT CTTGTTGTTC TTGCAGTTTG 61 TGGTGTTTTT GCTGAGGAGA ACGAATATGT GTTGACTTTG GACCATTCTA ACCTCACTGA 121 GACTGTTGCT AAGCACAACT TCATTGTTGT TGAATTCTAT GCACCTTGGT GTGGACACTG 181 TAAGAGTCTT GCTCCTGAGT ATGAAAAAGC TGCCTCAGAG CTGAGTAGTC ATGACCCTCC 241 AATTGTTCTA GCTAAGTATG ATGCAAATGA TGAAGCCAAT AGAGAACTTT CAAAACAGTA 301 CGAGAT Predicted gene structure (within gDNA segment 1025 to 3839): Exon 1 1625 1792 ( 168 n); cDNA 1 168 ( 168 n); score: 1.000 Intron 1 1793 2968 (1176 n); Pd: 1.000 (s: 1.00), Pa: 0.997 (s: 0) Exon 2 2969 2999 ( 31 n); cDNA 169 199 ( 31 n); score: 1.000 Intron 2 3000 3122 ( 123 n); Pd: 0.917 (s: 0), Pa: 0.997 (s: 1.00) Exon 3 3123 3229 ( 107 n); cDNA 200 306 ( 107 n); score: 1.000 MATCH C06HBa0054K13.1-11+ SGN-E299009+ 1.000 306 1.000 C PGS_C06HBa0054K13.1-11+_SGN-E299009+ (1625 1792,2969 2999,3123 3229) Alignment (genomic DNA sequence = upper lines): AAAAATGGCA AAGAGTGGCA TTTTGGTAAT TGTTTCAGCT CTTGTTGTTC TTGCAGTTTG 1684 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAAATGGCA AAGAGTGGCA TTTTGGTAAT TGTTTCAGCT CTTGTTGTTC TTGCAGTTTG 60 TGGTGTTTTT GCTGAGGAGA ACGAATATGT GTTGACTTTG GACCATTCTA ACCTCACTGA 1744 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGTGTTTTT GCTGAGGAGA ACGAATATGT GTTGACTTTG GACCATTCTA ACCTCACTGA 120 GACTGTTGCT AAGCACAACT TCATTGTTGT TGAATTCTAT GCACCTTGGT AAGTCATCTG 1804 |||||||||| |||||||||| |||||||||| |||||||||| |||||||| GACTGTTGCT AAGCACAACT TCATTGTTGT TGAATTCTAT GCACCTTG.. .......... 168 CTGTTTTTTT TTCTATTTAT TTTCTTGAAA AAAGTTCATT TTTTTTGCTT GTTGAATCTG 1864 .......... .......... .......... .......... .......... .......... 168 TATGTGCAGA ATGTAATGAA TGATTGGATG TAAGGGGTTT TGTTTTTGAT CTGTTTTTTT 1924 .......... .......... .......... .......... .......... .......... 168 TTTGTTATTT TAGTGAATTT TTGCTGTAAT TTTTTTGTTT TCATAAGCTG TGTGAGGAAT 1984 .......... .......... .......... .......... .......... .......... 168 GCATCAAGAT CAGTTCTTTA TGTTAATTTG TCTTAAAGGG TTCATCAAGG ACCCCTTTGG 2044 .......... .......... .......... .......... .......... .......... 168 CTCTACTTTG CTGTTCCTGT TTTTTTTTTT TTTTTGGAGT TTTATCTTTT TGCTGGTTTC 2104 .......... .......... .......... .......... .......... .......... 168 TCTGGCTTTA GAAACTGCAT GTGCAGAAGA TAATCAATGA CTGGTTCTTT TTCTTTTGGG 2164 .......... .......... .......... .......... .......... .......... 168 GAATTTAAGG TTTTGTTATG TAAATGGTTT TTTTTTCTGA TTTTTCTGCT GTAATTTTTT 2224 .......... .......... .......... .......... .......... .......... 168 ATTTTACACA TTGACTTGAA TTTGTCTGAA AGGGTTTTTC AAGGATCCTT TTGTTGATGG 2284 .......... .......... .......... .......... .......... .......... 168 ATGTATTTTG ATTTGTGGAT TGATTGAGGT TTTAAGGCTT TTTCTGTAAA AAGCTTCTTC 2344 .......... .......... .......... .......... .......... .......... 168 TTTTAATTCA TGGTTGATGC TTCTAGAATC TGGATTTGCT TGATGAGTTC TAGGTTATAA 2404 .......... .......... .......... .......... .......... .......... 168 GGTTTCCTCT TTTTATTTAA TTTGCTGCTT GTTTTTTGGT ATTTAAAATC TCTGTGTCCA 2464 .......... .......... .......... .......... .......... .......... 168 GAATTTTACA AAAATATTAA TAAATCTGGA TTTGTCTTTG TGTTCTGTGT TGCTGCAAGT 2524 .......... .......... .......... .......... .......... .......... 168 TAATGGTTTT TCCATTTCTG TGACAGTCTA GTCAATTGGA ATGTAAAATC TGTTTTTCTA 2584 .......... .......... .......... .......... .......... .......... 168 TTTTTGTGTA TGTATTTGGA TCTATGTCAA GAGGTTCCAG TGATCTGTGT TAATAGAAGT 2644 .......... .......... .......... .......... .......... .......... 168 GATTCTTTTA GCCAAATTGT CTTCTTGTTA TGTGTAGTGG TGGATCCAAT GTAATGGTAC 2704 .......... .......... .......... .......... .......... .......... 168 CAGGTTCATC TGAACCTAAT AGTTTCGACT CGGAGCATAA ATTTATGTGT AGGAATTCAC 2764 .......... .......... .......... .......... .......... .......... 168 TAAAATTGCA ATAAATAGTA GACATGAATG ATGTTGATGA CGACATGCTT GAGATGGTTG 2824 .......... .......... .......... .......... .......... .......... 168 TATTAATAGC TTGCATTAGT TTCGATCTTT TCTATGGTAT CAATTCCCAT AGTTATACGT 2884 .......... .......... .......... .......... .......... .......... 168 TGTTGTCGAA ATGTTTATTT AGTTATTCTT TGACATGAAA TTTTTTTACT TTATGAGTAA 2944 .......... .......... .......... .......... .......... .......... 168 CTGATAATAT ACTTGCAATT ACAGGTGTGG ACACTGTAAG AGTCTTGCTC CTGAGGTACA 3004 |||||| |||||||||| |||||||||| ||||| .......... .......... ....GTGTGG ACACTGTAAG AGTCTTGCTC CTGAG..... 199 CTTTCTTCTA TACAGTGCTT AATGAAGGAA GGAATATCAT TTTTCTCTGT CATTATGTTT 3064 .......... .......... .......... .......... .......... .......... 199 TTTCTTGGCA TTTTCAATCT ATGCAACTGA TTTAATGTTA AATTATGTTT CTTTCCAGTA 3124 || .......... .......... .......... .......... .......... ........TA 201 TGAAAAAGCT GCCTCAGAGC TGAGTAGTCA TGACCCTCCA ATTGTTCTAG CTAAGTATGA 3184 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAAAAAGCT GCCTCAGAGC TGAGTAGTCA TGACCCTCCA ATTGTTCTAG CTAAGTATGA 261 TGCAAATGAT GAAGCCAATA GAGAACTTTC AAAACAGTAC GAGAT 3229 |||||||||| |||||||||| |||||||||| |||||||||| ||||| TGCAAATGAT GAAGCCAATA GAGAACTTTC AAAACAGTAC GAGAT 306 hqPGS_C06HBa0054K13.1-11+_SGN-E299009+ (1625 1792,2969 2999,3123 3229) ******************************************************************************** EST sequence 103 +strand 306 n (File: SGN-E300128+) 1 AAAAATGGCA AAGAGTGGCA TTTTGGTAAT TGTTTCAGCT CTTGTTGTTC TTGCAGTTTG 61 TGGTGTTTTT GCTGAGGAGA ACGAATATGT GTTGACTTTG GACCATTCTA ACCTCACTGA 121 GACTGTTGCT AAGCACAACT TCATTGTTGT TGAATTCTAT GCACCTTGGT GTGGACACTG 181 TAAGAGTCTT GCTCCTGAGT ATGAAAAAGC TGCCTCAGAG CTGAGTAGTC ATGACCCTCC 241 AATTGTTCTA GCTAAGTATG ATGCAAATGA TGAAGCCAAT AGAGAACTTT CAAAACAGTA 301 CGAGAT Predicted gene structure (within gDNA segment 1025 to 3839): Exon 1 1625 1792 ( 168 n); cDNA 1 168 ( 168 n); score: 1.000 Intron 1 1793 2968 (1176 n); Pd: 1.000 (s: 1.00), Pa: 0.997 (s: 0) Exon 2 2969 2999 ( 31 n); cDNA 169 199 ( 31 n); score: 1.000 Intron 2 3000 3122 ( 123 n); Pd: 0.917 (s: 0), Pa: 0.997 (s: 1.00) Exon 3 3123 3229 ( 107 n); cDNA 200 306 ( 107 n); score: 1.000 MATCH C06HBa0054K13.1-11+ SGN-E300128+ 1.000 306 1.000 C PGS_C06HBa0054K13.1-11+_SGN-E300128+ (1625 1792,2969 2999,3123 3229) Alignment (genomic DNA sequence = upper lines): AAAAATGGCA AAGAGTGGCA TTTTGGTAAT TGTTTCAGCT CTTGTTGTTC TTGCAGTTTG 1684 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAAATGGCA AAGAGTGGCA TTTTGGTAAT TGTTTCAGCT CTTGTTGTTC TTGCAGTTTG 60 TGGTGTTTTT GCTGAGGAGA ACGAATATGT GTTGACTTTG GACCATTCTA ACCTCACTGA 1744 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGTGTTTTT GCTGAGGAGA ACGAATATGT GTTGACTTTG GACCATTCTA ACCTCACTGA 120 GACTGTTGCT AAGCACAACT TCATTGTTGT TGAATTCTAT GCACCTTGGT AAGTCATCTG 1804 |||||||||| |||||||||| |||||||||| |||||||||| |||||||| GACTGTTGCT AAGCACAACT TCATTGTTGT TGAATTCTAT GCACCTTG.. .......... 168 CTGTTTTTTT TTCTATTTAT TTTCTTGAAA AAAGTTCATT TTTTTTGCTT GTTGAATCTG 1864 .......... .......... .......... .......... .......... .......... 168 TATGTGCAGA ATGTAATGAA TGATTGGATG TAAGGGGTTT TGTTTTTGAT CTGTTTTTTT 1924 .......... .......... .......... .......... .......... .......... 168 TTTGTTATTT TAGTGAATTT TTGCTGTAAT TTTTTTGTTT TCATAAGCTG TGTGAGGAAT 1984 .......... .......... .......... .......... .......... .......... 168 GCATCAAGAT CAGTTCTTTA TGTTAATTTG TCTTAAAGGG TTCATCAAGG ACCCCTTTGG 2044 .......... .......... .......... .......... .......... .......... 168 CTCTACTTTG CTGTTCCTGT TTTTTTTTTT TTTTTGGAGT TTTATCTTTT TGCTGGTTTC 2104 .......... .......... .......... .......... .......... .......... 168 TCTGGCTTTA GAAACTGCAT GTGCAGAAGA TAATCAATGA CTGGTTCTTT TTCTTTTGGG 2164 .......... .......... .......... .......... .......... .......... 168 GAATTTAAGG TTTTGTTATG TAAATGGTTT TTTTTTCTGA TTTTTCTGCT GTAATTTTTT 2224 .......... .......... .......... .......... .......... .......... 168 ATTTTACACA TTGACTTGAA TTTGTCTGAA AGGGTTTTTC AAGGATCCTT TTGTTGATGG 2284 .......... .......... .......... .......... .......... .......... 168 ATGTATTTTG ATTTGTGGAT TGATTGAGGT TTTAAGGCTT TTTCTGTAAA AAGCTTCTTC 2344 .......... .......... .......... .......... .......... .......... 168 TTTTAATTCA TGGTTGATGC TTCTAGAATC TGGATTTGCT TGATGAGTTC TAGGTTATAA 2404 .......... .......... .......... .......... .......... .......... 168 GGTTTCCTCT TTTTATTTAA TTTGCTGCTT GTTTTTTGGT ATTTAAAATC TCTGTGTCCA 2464 .......... .......... .......... .......... .......... .......... 168 GAATTTTACA AAAATATTAA TAAATCTGGA TTTGTCTTTG TGTTCTGTGT TGCTGCAAGT 2524 .......... .......... .......... .......... .......... .......... 168 TAATGGTTTT TCCATTTCTG TGACAGTCTA GTCAATTGGA ATGTAAAATC TGTTTTTCTA 2584 .......... .......... .......... .......... .......... .......... 168 TTTTTGTGTA TGTATTTGGA TCTATGTCAA GAGGTTCCAG TGATCTGTGT TAATAGAAGT 2644 .......... .......... .......... .......... .......... .......... 168 GATTCTTTTA GCCAAATTGT CTTCTTGTTA TGTGTAGTGG TGGATCCAAT GTAATGGTAC 2704 .......... .......... .......... .......... .......... .......... 168 CAGGTTCATC TGAACCTAAT AGTTTCGACT CGGAGCATAA ATTTATGTGT AGGAATTCAC 2764 .......... .......... .......... .......... .......... .......... 168 TAAAATTGCA ATAAATAGTA GACATGAATG ATGTTGATGA CGACATGCTT GAGATGGTTG 2824 .......... .......... .......... .......... .......... .......... 168 TATTAATAGC TTGCATTAGT TTCGATCTTT TCTATGGTAT CAATTCCCAT AGTTATACGT 2884 .......... .......... .......... .......... .......... .......... 168 TGTTGTCGAA ATGTTTATTT AGTTATTCTT TGACATGAAA TTTTTTTACT TTATGAGTAA 2944 .......... .......... .......... .......... .......... .......... 168 CTGATAATAT ACTTGCAATT ACAGGTGTGG ACACTGTAAG AGTCTTGCTC CTGAGGTACA 3004 |||||| |||||||||| |||||||||| ||||| .......... .......... ....GTGTGG ACACTGTAAG AGTCTTGCTC CTGAG..... 199 CTTTCTTCTA TACAGTGCTT AATGAAGGAA GGAATATCAT TTTTCTCTGT CATTATGTTT 3064 .......... .......... .......... .......... .......... .......... 199 TTTCTTGGCA TTTTCAATCT ATGCAACTGA TTTAATGTTA AATTATGTTT CTTTCCAGTA 3124 || .......... .......... .......... .......... .......... ........TA 201 TGAAAAAGCT GCCTCAGAGC TGAGTAGTCA TGACCCTCCA ATTGTTCTAG CTAAGTATGA 3184 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAAAAAGCT GCCTCAGAGC TGAGTAGTCA TGACCCTCCA ATTGTTCTAG CTAAGTATGA 261 TGCAAATGAT GAAGCCAATA GAGAACTTTC AAAACAGTAC GAGAT 3229 |||||||||| |||||||||| |||||||||| |||||||||| ||||| TGCAAATGAT GAAGCCAATA GAGAACTTTC AAAACAGTAC GAGAT 306 hqPGS_C06HBa0054K13.1-11+_SGN-E300128+ (1625 1792,2969 2999,3123 3229) ******************************************************************************** EST sequence 102 +strand 707 n (File: SGN-E333628+) 1 AAAATGGCAA AGAGTGGCAT TTTGGTAATT GTTTCAGCTC TTGTTGTTCT TGCAGTTTGT 61 GGTGTTTTTG CTGAGGAGAA CGAATATGTG TTGACTTTGG ACCATTCTAA CCTCACTGAG 121 ACTGTTGCTA AGCACAACTT CATTGTTGTT GAATTCTATG CACCTTGGTG TGGACACTGT 181 AAGAGTCTTG CTCCTGAGTA TGAAAAAGCT GCCTCAGAGC TGAGTAGTCA TGACCCTCCA 241 ATTGTTCTAG CTAAGTATGA TGCAAATGAT GAAGCCAATA GAGAACTTTC AAAACAGTAC 301 GAGATCCAGG GTTTCCCAAC TATTAAGATA TTGAGAGATG GAGGAAAGAA AGTTCAAGAC 361 TATAACGGTC CTCGTGAAGC AGCTGGTATT GTATCCTACT TGAAGAAACA AGTGGGTCCT 421 GCATCTGCTG AAATCAAGTC GAAGGAAGAT GCCACAAACC TTATTGATGA GAAAAGTATC 481 TTTGTTGTTG GTATATTTCC AGACCCCTCC GGAGAGAAAT TCGAGAACTA TTTAACGCTA 541 GCTGAAAAAC TGCGAGGCGA GTTCGATTTT GCTCACACTG TTGATGCTAA ACACCTCCCT 601 CGGGGTGGGA CAGTCAACAA GCCCACTCTT CGTCTTCTAA AGCCATTTGA TGAAACTCTT 661 GTTGATTTTG AGGACTTTGA TGTCGATGCA ATGGAGAAGT TCATCTC Predicted gene structure (within gDNA segment 1026 to 4454): Exon 1 1626 1792 ( 167 n); cDNA 1 167 ( 167 n); score: 1.000 Intron 1 1793 2968 (1176 n); Pd: 1.000 (s: 1.00), Pa: 0.997 (s: 0) Exon 2 2969 2999 ( 31 n); cDNA 168 198 ( 31 n); score: 1.000 Intron 2 3000 3122 ( 123 n); Pd: 0.917 (s: 0), Pa: 0.997 (s: 1.00) Exon 3 3123 3410 ( 288 n); cDNA 199 486 ( 288 n); score: 1.000 Intron 3 3411 3508 ( 98 n); Pd: 0.907 (s: 1.00), Pa: 0.997 (s: 1.00) Exon 4 3509 3694 ( 186 n); cDNA 487 672 ( 186 n); score: 0.968 Intron 4 3695 3809 ( 115 n); Pd: 0.988 (s: 0.92), Pa: 0.999 (s: 0) Exon 5 3810 3844 ( 35 n); cDNA 673 707 ( 35 n); score: 1.000 MATCH C06HBa0054K13.1-11+ SGN-E333628+ 0.991 707 1.000 C PGS_C06HBa0054K13.1-11+_SGN-E333628+ (1626 1792,2969 2999,3123 3410,3509 3694,3810 3844) Alignment (genomic DNA sequence = upper lines): AAAATGGCAA AGAGTGGCAT TTTGGTAATT GTTTCAGCTC TTGTTGTTCT TGCAGTTTGT 1685 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAATGGCAA AGAGTGGCAT TTTGGTAATT GTTTCAGCTC TTGTTGTTCT TGCAGTTTGT 60 GGTGTTTTTG CTGAGGAGAA CGAATATGTG TTGACTTTGG ACCATTCTAA CCTCACTGAG 1745 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGTGTTTTTG CTGAGGAGAA CGAATATGTG TTGACTTTGG ACCATTCTAA CCTCACTGAG 120 ACTGTTGCTA AGCACAACTT CATTGTTGTT GAATTCTATG CACCTTGGTA AGTCATCTGC 1805 |||||||||| |||||||||| |||||||||| |||||||||| ||||||| ACTGTTGCTA AGCACAACTT CATTGTTGTT GAATTCTATG CACCTTG... .......... 167 TGTTTTTTTT TCTATTTATT TTCTTGAAAA AAGTTCATTT TTTTTGCTTG TTGAATCTGT 1865 .......... .......... .......... .......... .......... .......... 167 ATGTGCAGAA TGTAATGAAT GATTGGATGT AAGGGGTTTT GTTTTTGATC TGTTTTTTTT 1925 .......... .......... .......... .......... .......... .......... 167 TTGTTATTTT AGTGAATTTT TGCTGTAATT TTTTTGTTTT CATAAGCTGT GTGAGGAATG 1985 .......... .......... .......... .......... .......... .......... 167 CATCAAGATC AGTTCTTTAT GTTAATTTGT CTTAAAGGGT TCATCAAGGA CCCCTTTGGC 2045 .......... .......... .......... .......... .......... .......... 167 TCTACTTTGC TGTTCCTGTT TTTTTTTTTT TTTTGGAGTT TTATCTTTTT GCTGGTTTCT 2105 .......... .......... .......... .......... .......... .......... 167 CTGGCTTTAG AAACTGCATG TGCAGAAGAT AATCAATGAC TGGTTCTTTT TCTTTTGGGG 2165 .......... .......... .......... .......... .......... .......... 167 AATTTAAGGT TTTGTTATGT AAATGGTTTT TTTTTCTGAT TTTTCTGCTG TAATTTTTTA 2225 .......... .......... .......... .......... .......... .......... 167 TTTTACACAT TGACTTGAAT TTGTCTGAAA GGGTTTTTCA AGGATCCTTT TGTTGATGGA 2285 .......... .......... .......... .......... .......... .......... 167 TGTATTTTGA TTTGTGGATT GATTGAGGTT TTAAGGCTTT TTCTGTAAAA AGCTTCTTCT 2345 .......... .......... .......... .......... .......... .......... 167 TTTAATTCAT GGTTGATGCT TCTAGAATCT GGATTTGCTT GATGAGTTCT AGGTTATAAG 2405 .......... .......... .......... .......... .......... .......... 167 GTTTCCTCTT TTTATTTAAT TTGCTGCTTG TTTTTTGGTA TTTAAAATCT CTGTGTCCAG 2465 .......... .......... .......... .......... .......... .......... 167 AATTTTACAA AAATATTAAT AAATCTGGAT TTGTCTTTGT GTTCTGTGTT GCTGCAAGTT 2525 .......... .......... .......... .......... .......... .......... 167 AATGGTTTTT CCATTTCTGT GACAGTCTAG TCAATTGGAA TGTAAAATCT GTTTTTCTAT 2585 .......... .......... .......... .......... .......... .......... 167 TTTTGTGTAT GTATTTGGAT CTATGTCAAG AGGTTCCAGT GATCTGTGTT AATAGAAGTG 2645 .......... .......... .......... .......... .......... .......... 167 ATTCTTTTAG CCAAATTGTC TTCTTGTTAT GTGTAGTGGT GGATCCAATG TAATGGTACC 2705 .......... .......... .......... .......... .......... .......... 167 AGGTTCATCT GAACCTAATA GTTTCGACTC GGAGCATAAA TTTATGTGTA GGAATTCACT 2765 .......... .......... .......... .......... .......... .......... 167 AAAATTGCAA TAAATAGTAG ACATGAATGA TGTTGATGAC GACATGCTTG AGATGGTTGT 2825 .......... .......... .......... .......... .......... .......... 167 ATTAATAGCT TGCATTAGTT TCGATCTTTT CTATGGTATC AATTCCCATA GTTATACGTT 2885 .......... .......... .......... .......... .......... .......... 167 GTTGTCGAAA TGTTTATTTA GTTATTCTTT GACATGAAAT TTTTTTACTT TATGAGTAAC 2945 .......... .......... .......... .......... .......... .......... 167 TGATAATATA CTTGCAATTA CAGGTGTGGA CACTGTAAGA GTCTTGCTCC TGAGGTACAC 3005 ||||||| |||||||||| |||||||||| |||| .......... .......... ...GTGTGGA CACTGTAAGA GTCTTGCTCC TGAG...... 198 TTTCTTCTAT ACAGTGCTTA ATGAAGGAAG GAATATCATT TTTCTCTGTC ATTATGTTTT 3065 .......... .......... .......... .......... .......... .......... 198 TTCTTGGCAT TTTCAATCTA TGCAACTGAT TTAATGTTAA ATTATGTTTC TTTCCAGTAT 3125 ||| .......... .......... .......... .......... .......... .......TAT 201 GAAAAAGCTG CCTCAGAGCT GAGTAGTCAT GACCCTCCAA TTGTTCTAGC TAAGTATGAT 3185 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAAAAGCTG CCTCAGAGCT GAGTAGTCAT GACCCTCCAA TTGTTCTAGC TAAGTATGAT 261 GCAAATGATG AAGCCAATAG AGAACTTTCA AAACAGTACG AGATCCAGGG TTTCCCAACT 3245 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCAAATGATG AAGCCAATAG AGAACTTTCA AAACAGTACG AGATCCAGGG TTTCCCAACT 321 ATTAAGATAT TGAGAGATGG AGGAAAGAAA GTTCAAGACT ATAACGGTCC TCGTGAAGCA 3305 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTAAGATAT TGAGAGATGG AGGAAAGAAA GTTCAAGACT ATAACGGTCC TCGTGAAGCA 381 GCTGGTATTG TATCCTACTT GAAGAAACAA GTGGGTCCTG CATCTGCTGA AATCAAGTCG 3365 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTGGTATTG TATCCTACTT GAAGAAACAA GTGGGTCCTG CATCTGCTGA AATCAAGTCG 441 AAGGAAGATG CCACAAACCT TATTGATGAG AAAAGTATCT TTGTTGTAAG TGGTGATACT 3425 |||||||||| |||||||||| |||||||||| |||||||||| ||||| AAGGAAGATG CCACAAACCT TATTGATGAG AAAAGTATCT TTGTT..... .......... 486 TTTGATGTTT TACTTATCAT TACTGAAGTT TATTTTCAGC ATGCCATAGC TTCTTGCTGT 3485 .......... .......... .......... .......... .......... .......... 486 CTAAAATCTT TCTGTTTCTT TAGGTTGGTA TATTTCCAGA CCCCTCCGGA GAGAAATTCG 3545 ||||||| |||||||||| |||||||||| |||||||||| .......... .......... ...GTTGGTA TATTTCCAGA CCCCTCCGGA GAGAAATTCG 523 AGAACTATTT AACGCTAGCT GAAAAACTGC GAGGCGAGTT CGATTTTGCT CACACTGTTG 3605 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAACTATTT AACGCTAGCT GAAAAACTGC GAGGCGAGTT CGATTTTGCT CACACTGTTG 583 ATGCTAAACA CCTCCCTCGG GGTGGACCAG TCAACAAGCC CACTCTTCGT CTTCTAAAGC 3665 |||||||||| |||||||||| ||||| ||| |||||||||| |||||||||| |||||||||| ATGCTAAACA CCTCCCTCGG GGTGGGACAG TCAACAAGCC CACTCTTCGT CTTCTAAAGC 643 CATTTGATGA ACTCTTTGTT GATTTTGAGG TATTACAGTT ATCTGTGTAT ATTTTTATCT 3725 |||||||||| | ||||| ||||||||| CATTTGATGA AACTCTTGTT GATTTTGAG. .......... .......... .......... 672 TTGATACTCA TTGTATTATG GTTATGAGGC TCAACTCTGT CCTATGTTAT CTTTTAATTG 3785 .......... .......... .......... .......... .......... .......... 672 GCCATTGATT GTACATACTT GCAGGACTTT GATGTCGATG CAATGGAGAA GTTCATCTC 3844 |||||| |||||||||| |||||||||| ||||||||| .......... .......... ....GACTTT GATGTCGATG CAATGGAGAA GTTCATCTC 707 hqPGS_C06HBa0054K13.1-11+_SGN-E333628+ (1626 1792,2969 2999,3123 3410,3509 3694,3810 3844) ******************************************************************************** EST sequence 101 +strand 687 n (File: SGN-E333815+) 1 AAAATGGCAA AGAGTGGCAT TTTGGTAATT GTTTCAGCTC TTGTTGTTCT TGCAGTTTGT 61 GGTGTTTTTG CTGAGGAGAA CGAATATGTG TTGACTTTGG ACCATTCTAA CCTCACTGAG 121 ACTGTTGCTA AGCACAACTT CATTGTTGTT GAATTCTATG CACCTTGGTG TGGACACTGT 181 AAGAGTCTTG CTCCTGAGTA TGAAAAAGCT GCCTCAGAGC TGAGTAGTCA TGACCCTCCA 241 ATTGTTCTAG CTAAGTATGA TGCAAATGAT GAAGCCAATA GAGAACTTTC AAAACAGTAC 301 GAGATCCAGG GTTTCCCAAC TATTAAGATA TTGAGAGATG GAGGAAAGAA AGTTCAAGAC 361 TATAACGGTC CTCGTGAAGC AGCTGGTATT GTATCCTACT TGAAGAAACA AGTGGGTCCT 421 GCATCTGCTG AAATCAAGTC GAAGGAAGAT GCCACAAACC TTATTGATGA GAAAAGTATC 481 TTTGTTGTTG GTATATTTCC AGACCCCTCC GGAGAGAAAT TCGAGAACTA TTTAACGCTA 541 GCTGAAAAAC TGCGAGGCGA GTTCGATTTT GCTCACACTG TTGATGCTAA ACACCTCCCT 601 CGGGGTGGAC CAGTCAACAA GCCCACTCTT CGTCTTCTAA GCCATTTGAT GAACTCTTTG 661 TTGATTTTGA GGACTTTGAT GTCGATG Predicted gene structure (within gDNA segment 1026 to 4455): Exon 1 1626 1792 ( 167 n); cDNA 1 167 ( 167 n); score: 1.000 Intron 1 1793 2968 (1176 n); Pd: 1.000 (s: 1.00), Pa: 0.997 (s: 0) Exon 2 2969 2999 ( 31 n); cDNA 168 198 ( 31 n); score: 1.000 Intron 2 3000 3122 ( 123 n); Pd: 0.917 (s: 0), Pa: 0.997 (s: 1.00) Exon 3 3123 3410 ( 288 n); cDNA 199 486 ( 288 n); score: 1.000 Intron 3 3411 3508 ( 98 n); Pd: 0.907 (s: 1.00), Pa: 0.997 (s: 1.00) Exon 4 3509 3694 ( 186 n); cDNA 487 671 ( 185 n); score: 0.995 Intron 4 3695 3809 ( 115 n); Pd: 0.988 (s: 0.98), Pa: 0.999 (s: 0) Exon 5 3810 3825 ( 16 n); cDNA 672 687 ( 16 n); score: 1.000 MATCH C06HBa0054K13.1-11+ SGN-E333815+ 0.998 688 1.001 C PGS_C06HBa0054K13.1-11+_SGN-E333815+ (1626 1792,2969 2999,3123 3410,3509 3694,3810 3825) Alignment (genomic DNA sequence = upper lines): AAAATGGCAA AGAGTGGCAT TTTGGTAATT GTTTCAGCTC TTGTTGTTCT TGCAGTTTGT 1685 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAATGGCAA AGAGTGGCAT TTTGGTAATT GTTTCAGCTC TTGTTGTTCT TGCAGTTTGT 60 GGTGTTTTTG CTGAGGAGAA CGAATATGTG TTGACTTTGG ACCATTCTAA CCTCACTGAG 1745 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGTGTTTTTG CTGAGGAGAA CGAATATGTG TTGACTTTGG ACCATTCTAA CCTCACTGAG 120 ACTGTTGCTA AGCACAACTT CATTGTTGTT GAATTCTATG CACCTTGGTA AGTCATCTGC 1805 |||||||||| |||||||||| |||||||||| |||||||||| ||||||| ACTGTTGCTA AGCACAACTT CATTGTTGTT GAATTCTATG CACCTTG... .......... 167 TGTTTTTTTT TCTATTTATT TTCTTGAAAA AAGTTCATTT TTTTTGCTTG TTGAATCTGT 1865 .......... .......... .......... .......... .......... .......... 167 ATGTGCAGAA TGTAATGAAT GATTGGATGT AAGGGGTTTT GTTTTTGATC TGTTTTTTTT 1925 .......... .......... .......... .......... .......... .......... 167 TTGTTATTTT AGTGAATTTT TGCTGTAATT TTTTTGTTTT CATAAGCTGT GTGAGGAATG 1985 .......... .......... .......... .......... .......... .......... 167 CATCAAGATC AGTTCTTTAT GTTAATTTGT CTTAAAGGGT TCATCAAGGA CCCCTTTGGC 2045 .......... .......... .......... .......... .......... .......... 167 TCTACTTTGC TGTTCCTGTT TTTTTTTTTT TTTTGGAGTT TTATCTTTTT GCTGGTTTCT 2105 .......... .......... .......... .......... .......... .......... 167 CTGGCTTTAG AAACTGCATG TGCAGAAGAT AATCAATGAC TGGTTCTTTT TCTTTTGGGG 2165 .......... .......... .......... .......... .......... .......... 167 AATTTAAGGT TTTGTTATGT AAATGGTTTT TTTTTCTGAT TTTTCTGCTG TAATTTTTTA 2225 .......... .......... .......... .......... .......... .......... 167 TTTTACACAT TGACTTGAAT TTGTCTGAAA GGGTTTTTCA AGGATCCTTT TGTTGATGGA 2285 .......... .......... .......... .......... .......... .......... 167 TGTATTTTGA TTTGTGGATT GATTGAGGTT TTAAGGCTTT TTCTGTAAAA AGCTTCTTCT 2345 .......... .......... .......... .......... .......... .......... 167 TTTAATTCAT GGTTGATGCT TCTAGAATCT GGATTTGCTT GATGAGTTCT AGGTTATAAG 2405 .......... .......... .......... .......... .......... .......... 167 GTTTCCTCTT TTTATTTAAT TTGCTGCTTG TTTTTTGGTA TTTAAAATCT CTGTGTCCAG 2465 .......... .......... .......... .......... .......... .......... 167 AATTTTACAA AAATATTAAT AAATCTGGAT TTGTCTTTGT GTTCTGTGTT GCTGCAAGTT 2525 .......... .......... .......... .......... .......... .......... 167 AATGGTTTTT CCATTTCTGT GACAGTCTAG TCAATTGGAA TGTAAAATCT GTTTTTCTAT 2585 .......... .......... .......... .......... .......... .......... 167 TTTTGTGTAT GTATTTGGAT CTATGTCAAG AGGTTCCAGT GATCTGTGTT AATAGAAGTG 2645 .......... .......... .......... .......... .......... .......... 167 ATTCTTTTAG CCAAATTGTC TTCTTGTTAT GTGTAGTGGT GGATCCAATG TAATGGTACC 2705 .......... .......... .......... .......... .......... .......... 167 AGGTTCATCT GAACCTAATA GTTTCGACTC GGAGCATAAA TTTATGTGTA GGAATTCACT 2765 .......... .......... .......... .......... .......... .......... 167 AAAATTGCAA TAAATAGTAG ACATGAATGA TGTTGATGAC GACATGCTTG AGATGGTTGT 2825 .......... .......... .......... .......... .......... .......... 167 ATTAATAGCT TGCATTAGTT TCGATCTTTT CTATGGTATC AATTCCCATA GTTATACGTT 2885 .......... .......... .......... .......... .......... .......... 167 GTTGTCGAAA TGTTTATTTA GTTATTCTTT GACATGAAAT TTTTTTACTT TATGAGTAAC 2945 .......... .......... .......... .......... .......... .......... 167 TGATAATATA CTTGCAATTA CAGGTGTGGA CACTGTAAGA GTCTTGCTCC TGAGGTACAC 3005 ||||||| |||||||||| |||||||||| |||| .......... .......... ...GTGTGGA CACTGTAAGA GTCTTGCTCC TGAG...... 198 TTTCTTCTAT ACAGTGCTTA ATGAAGGAAG GAATATCATT TTTCTCTGTC ATTATGTTTT 3065 .......... .......... .......... .......... .......... .......... 198 TTCTTGGCAT TTTCAATCTA TGCAACTGAT TTAATGTTAA ATTATGTTTC TTTCCAGTAT 3125 ||| .......... .......... .......... .......... .......... .......TAT 201 GAAAAAGCTG CCTCAGAGCT GAGTAGTCAT GACCCTCCAA TTGTTCTAGC TAAGTATGAT 3185 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAAAAGCTG CCTCAGAGCT GAGTAGTCAT GACCCTCCAA TTGTTCTAGC TAAGTATGAT 261 GCAAATGATG AAGCCAATAG AGAACTTTCA AAACAGTACG AGATCCAGGG TTTCCCAACT 3245 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCAAATGATG AAGCCAATAG AGAACTTTCA AAACAGTACG AGATCCAGGG TTTCCCAACT 321 ATTAAGATAT TGAGAGATGG AGGAAAGAAA GTTCAAGACT ATAACGGTCC TCGTGAAGCA 3305 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTAAGATAT TGAGAGATGG AGGAAAGAAA GTTCAAGACT ATAACGGTCC TCGTGAAGCA 381 GCTGGTATTG TATCCTACTT GAAGAAACAA GTGGGTCCTG CATCTGCTGA AATCAAGTCG 3365 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTGGTATTG TATCCTACTT GAAGAAACAA GTGGGTCCTG CATCTGCTGA AATCAAGTCG 441 AAGGAAGATG CCACAAACCT TATTGATGAG AAAAGTATCT TTGTTGTAAG TGGTGATACT 3425 |||||||||| |||||||||| |||||||||| |||||||||| ||||| AAGGAAGATG CCACAAACCT TATTGATGAG AAAAGTATCT TTGTT..... .......... 486 TTTGATGTTT TACTTATCAT TACTGAAGTT TATTTTCAGC ATGCCATAGC TTCTTGCTGT 3485 .......... .......... .......... .......... .......... .......... 486 CTAAAATCTT TCTGTTTCTT TAGGTTGGTA TATTTCCAGA CCCCTCCGGA GAGAAATTCG 3545 ||||||| |||||||||| |||||||||| |||||||||| .......... .......... ...GTTGGTA TATTTCCAGA CCCCTCCGGA GAGAAATTCG 523 AGAACTATTT AACGCTAGCT GAAAAACTGC GAGGCGAGTT CGATTTTGCT CACACTGTTG 3605 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAACTATTT AACGCTAGCT GAAAAACTGC GAGGCGAGTT CGATTTTGCT CACACTGTTG 583 ATGCTAAACA CCTCCCTCGG GGTGGACCAG TCAACAAGCC CACTCTTCGT CTTCTAAAGC 3665 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||| |||| ATGCTAAACA CCTCCCTCGG GGTGGACCAG TCAACAAGCC CACTCTTCGT CTTCT-AAGC 642 CATTTGATGA ACTCTTTGTT GATTTTGAGG TATTACAGTT ATCTGTGTAT ATTTTTATCT 3725 |||||||||| |||||||||| ||||||||| CATTTGATGA ACTCTTTGTT GATTTTGAG. .......... .......... .......... 671 TTGATACTCA TTGTATTATG GTTATGAGGC TCAACTCTGT CCTATGTTAT CTTTTAATTG 3785 .......... .......... .......... .......... .......... .......... 671 GCCATTGATT GTACATACTT GCAGGACTTT GATGTCGATG 3825 |||||| |||||||||| .......... .......... ....GACTTT GATGTCGATG 687 hqPGS_C06HBa0054K13.1-11+_SGN-E333815+ (1626 1792,2969 2999,3123 3410,3509 3694,3810 3825) ******************************************************************************** EST sequence 93 +strand 587 n (File: SGN-E207905+) 1 AAAATGGCAA AGAGTGGCAT TTTGGTAATT GTTTCAGCTC TTGTTGTTCT TGCAGTTTGT 61 GGTGTTTTTG CTGAGGAGAA CGAATATGTG TTGACTTTGG ACCATTCTAA CCTCACTGAG 121 ACTGTTGCTA AGCACAACTT CATTGTTGTT GAATTCTATG CACCTTGGTG TGGACACTGT 181 AAGAGTCTTG CTCCTGAGTA TGAAAAAGCT GCCTCAGAGC TGAGTAGTCA TGACCCTCCA 241 ATTGTTCTAG CTAAGTATGA TGCAAATGAT GAAGCCAATA GAGAACTTTC AAAACAGTAC 301 GAGATCCAGG GTTTCCCAAC TATTAAGATA TTGAGAGATG GAGGAAAGAA AGTTCAAGAC 361 TATAACGGTC CTCGTGAAGC AGCTGGTATT GTATCCTACT TGAAGAAACA AGTGGGTCCT 421 GCATCTGCTG AAATCAAGTC GAAGGAAGAT GCCACAAACC TTATTGATGA GAAAAGTATC 481 TTTGTTGTTG GTATATTTCC AGACCCCTCC GGAGAGAAAT TCGAGAACTA TTTAACGCTA 541 GCTGAAAAAC TGCGAGGCGA GTTCGATTTT GCTCACACTG TTGATGC Predicted gene structure (within gDNA segment 1026 to 4219): Exon 1 1626 1792 ( 167 n); cDNA 1 167 ( 167 n); score: 1.000 Intron 1 1793 2968 (1176 n); Pd: 1.000 (s: 1.00), Pa: 0.997 (s: 0) Exon 2 2969 2999 ( 31 n); cDNA 168 198 ( 31 n); score: 1.000 Intron 2 3000 3122 ( 123 n); Pd: 0.917 (s: 0), Pa: 0.997 (s: 1.00) Exon 3 3123 3410 ( 288 n); cDNA 199 486 ( 288 n); score: 1.000 Intron 3 3411 3508 ( 98 n); Pd: 0.907 (s: 1.00), Pa: 0.997 (s: 1.00) Exon 4 3509 3609 ( 101 n); cDNA 487 587 ( 101 n); score: 1.000 MATCH C06HBa0054K13.1-11+ SGN-E207905+ 1.000 587 1.000 C PGS_C06HBa0054K13.1-11+_SGN-E207905+ (1626 1792,2969 2999,3123 3410,3509 3609) Alignment (genomic DNA sequence = upper lines): AAAATGGCAA AGAGTGGCAT TTTGGTAATT GTTTCAGCTC TTGTTGTTCT TGCAGTTTGT 1685 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAATGGCAA AGAGTGGCAT TTTGGTAATT GTTTCAGCTC TTGTTGTTCT TGCAGTTTGT 60 GGTGTTTTTG CTGAGGAGAA CGAATATGTG TTGACTTTGG ACCATTCTAA CCTCACTGAG 1745 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGTGTTTTTG CTGAGGAGAA CGAATATGTG TTGACTTTGG ACCATTCTAA CCTCACTGAG 120 ACTGTTGCTA AGCACAACTT CATTGTTGTT GAATTCTATG CACCTTGGTA AGTCATCTGC 1805 |||||||||| |||||||||| |||||||||| |||||||||| ||||||| ACTGTTGCTA AGCACAACTT CATTGTTGTT GAATTCTATG CACCTTG... .......... 167 TGTTTTTTTT TCTATTTATT TTCTTGAAAA AAGTTCATTT TTTTTGCTTG TTGAATCTGT 1865 .......... .......... .......... .......... .......... .......... 167 ATGTGCAGAA TGTAATGAAT GATTGGATGT AAGGGGTTTT GTTTTTGATC TGTTTTTTTT 1925 .......... .......... .......... .......... .......... .......... 167 TTGTTATTTT AGTGAATTTT TGCTGTAATT TTTTTGTTTT CATAAGCTGT GTGAGGAATG 1985 .......... .......... .......... .......... .......... .......... 167 CATCAAGATC AGTTCTTTAT GTTAATTTGT CTTAAAGGGT TCATCAAGGA CCCCTTTGGC 2045 .......... .......... .......... .......... .......... .......... 167 TCTACTTTGC TGTTCCTGTT TTTTTTTTTT TTTTGGAGTT TTATCTTTTT GCTGGTTTCT 2105 .......... .......... .......... .......... .......... .......... 167 CTGGCTTTAG AAACTGCATG TGCAGAAGAT AATCAATGAC TGGTTCTTTT TCTTTTGGGG 2165 .......... .......... .......... .......... .......... .......... 167 AATTTAAGGT TTTGTTATGT AAATGGTTTT TTTTTCTGAT TTTTCTGCTG TAATTTTTTA 2225 .......... .......... .......... .......... .......... .......... 167 TTTTACACAT TGACTTGAAT TTGTCTGAAA GGGTTTTTCA AGGATCCTTT TGTTGATGGA 2285 .......... .......... .......... .......... .......... .......... 167 TGTATTTTGA TTTGTGGATT GATTGAGGTT TTAAGGCTTT TTCTGTAAAA AGCTTCTTCT 2345 .......... .......... .......... .......... .......... .......... 167 TTTAATTCAT GGTTGATGCT TCTAGAATCT GGATTTGCTT GATGAGTTCT AGGTTATAAG 2405 .......... .......... .......... .......... .......... .......... 167 GTTTCCTCTT TTTATTTAAT TTGCTGCTTG TTTTTTGGTA TTTAAAATCT CTGTGTCCAG 2465 .......... .......... .......... .......... .......... .......... 167 AATTTTACAA AAATATTAAT AAATCTGGAT TTGTCTTTGT GTTCTGTGTT GCTGCAAGTT 2525 .......... .......... .......... .......... .......... .......... 167 AATGGTTTTT CCATTTCTGT GACAGTCTAG TCAATTGGAA TGTAAAATCT GTTTTTCTAT 2585 .......... .......... .......... .......... .......... .......... 167 TTTTGTGTAT GTATTTGGAT CTATGTCAAG AGGTTCCAGT GATCTGTGTT AATAGAAGTG 2645 .......... .......... .......... .......... .......... .......... 167 ATTCTTTTAG CCAAATTGTC TTCTTGTTAT GTGTAGTGGT GGATCCAATG TAATGGTACC 2705 .......... .......... .......... .......... .......... .......... 167 AGGTTCATCT GAACCTAATA GTTTCGACTC GGAGCATAAA TTTATGTGTA GGAATTCACT 2765 .......... .......... .......... .......... .......... .......... 167 AAAATTGCAA TAAATAGTAG ACATGAATGA TGTTGATGAC GACATGCTTG AGATGGTTGT 2825 .......... .......... .......... .......... .......... .......... 167 ATTAATAGCT TGCATTAGTT TCGATCTTTT CTATGGTATC AATTCCCATA GTTATACGTT 2885 .......... .......... .......... .......... .......... .......... 167 GTTGTCGAAA TGTTTATTTA GTTATTCTTT GACATGAAAT TTTTTTACTT TATGAGTAAC 2945 .......... .......... .......... .......... .......... .......... 167 TGATAATATA CTTGCAATTA CAGGTGTGGA CACTGTAAGA GTCTTGCTCC TGAGGTACAC 3005 ||||||| |||||||||| |||||||||| |||| .......... .......... ...GTGTGGA CACTGTAAGA GTCTTGCTCC TGAG...... 198 TTTCTTCTAT ACAGTGCTTA ATGAAGGAAG GAATATCATT TTTCTCTGTC ATTATGTTTT 3065 .......... .......... .......... .......... .......... .......... 198 TTCTTGGCAT TTTCAATCTA TGCAACTGAT TTAATGTTAA ATTATGTTTC TTTCCAGTAT 3125 ||| .......... .......... .......... .......... .......... .......TAT 201 GAAAAAGCTG CCTCAGAGCT GAGTAGTCAT GACCCTCCAA TTGTTCTAGC TAAGTATGAT 3185 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAAAAGCTG CCTCAGAGCT GAGTAGTCAT GACCCTCCAA TTGTTCTAGC TAAGTATGAT 261 GCAAATGATG AAGCCAATAG AGAACTTTCA AAACAGTACG AGATCCAGGG TTTCCCAACT 3245 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCAAATGATG AAGCCAATAG AGAACTTTCA AAACAGTACG AGATCCAGGG TTTCCCAACT 321 ATTAAGATAT TGAGAGATGG AGGAAAGAAA GTTCAAGACT ATAACGGTCC TCGTGAAGCA 3305 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTAAGATAT TGAGAGATGG AGGAAAGAAA GTTCAAGACT ATAACGGTCC TCGTGAAGCA 381 GCTGGTATTG TATCCTACTT GAAGAAACAA GTGGGTCCTG CATCTGCTGA AATCAAGTCG 3365 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTGGTATTG TATCCTACTT GAAGAAACAA GTGGGTCCTG CATCTGCTGA AATCAAGTCG 441 AAGGAAGATG CCACAAACCT TATTGATGAG AAAAGTATCT TTGTTGTAAG TGGTGATACT 3425 |||||||||| |||||||||| |||||||||| |||||||||| ||||| AAGGAAGATG CCACAAACCT TATTGATGAG AAAAGTATCT TTGTT..... .......... 486 TTTGATGTTT TACTTATCAT TACTGAAGTT TATTTTCAGC ATGCCATAGC TTCTTGCTGT 3485 .......... .......... .......... .......... .......... .......... 486 CTAAAATCTT TCTGTTTCTT TAGGTTGGTA TATTTCCAGA CCCCTCCGGA GAGAAATTCG 3545 ||||||| |||||||||| |||||||||| |||||||||| .......... .......... ...GTTGGTA TATTTCCAGA CCCCTCCGGA GAGAAATTCG 523 AGAACTATTT AACGCTAGCT GAAAAACTGC GAGGCGAGTT CGATTTTGCT CACACTGTTG 3605 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAACTATTT AACGCTAGCT GAAAAACTGC GAGGCGAGTT CGATTTTGCT CACACTGTTG 583 ATGC 3609 |||| ATGC 587 hqPGS_C06HBa0054K13.1-11+_SGN-E207905+ (1626 1792,2969 2999,3123 3410,3509 3609) ******************************************************************************** EST sequence 58 +strand 546 n (File: SGN-E324073+) 1 AAAATGGCAA AGAGTGGCAT TTTGGTAATT GTTTCAGCTC TTGTTGTTCT TGCAGTTTGT 61 GGTGTTTTTG CTGAGGAGAA CGAATATGTG TTGACTTTGG ACCATTCTAA CCTCACTGAG 121 ACTGTTGCTA AGCACAACTT CATTGTTGTT GAATTCTATG CACCTTGGTG TGGACACTGT 181 AAGAGTCTTG CTCCTGAGTA TGAAAAAGCT GCCTCAGAGC TGAGTAGTCA TGACCCTCCA 241 ATTGTTCTAG CTAAGTATGA TGCAAATGAT GAAGCCAATA GAGAACTTTC AAAACAGTAC 301 GAGATCCAGG GTTTCCCAAC TATTAAGATA TTGAGAGATG GAGGAAAGAA AGTTCAAGAC 361 TATAACGGTC CTCGTGAAGC AGCTGGTATT GTATCCTACT TGAAGAAACA AGTGGGTCCT 421 GCATCTGCTG AAATCAAGTC GAAGGAAGAT GCCACAAACC TTATTGATGA GAAAAGTATC 481 TTTGTTGTTG GTATATTTCC AGACCCCTCC GGAGAGAAAT TCGAGAACTA TTTAACGCTA 541 GCTGAA Predicted gene structure (within gDNA segment 1026 to 4178): Exon 1 1626 1792 ( 167 n); cDNA 1 167 ( 167 n); score: 1.000 Intron 1 1793 2968 (1176 n); Pd: 1.000 (s: 1.00), Pa: 0.997 (s: 0) Exon 2 2969 2999 ( 31 n); cDNA 168 198 ( 31 n); score: 1.000 Intron 2 3000 3122 ( 123 n); Pd: 0.917 (s: 0), Pa: 0.997 (s: 1.00) Exon 3 3123 3410 ( 288 n); cDNA 199 486 ( 288 n); score: 1.000 Intron 3 3411 3508 ( 98 n); Pd: 0.907 (s: 1.00), Pa: 0.997 (s: 1.00) Exon 4 3509 3568 ( 60 n); cDNA 487 546 ( 60 n); score: 1.000 MATCH C06HBa0054K13.1-11+ SGN-E324073+ 1.000 546 1.000 C PGS_C06HBa0054K13.1-11+_SGN-E324073+ (1626 1792,2969 2999,3123 3410,3509 3568) Alignment (genomic DNA sequence = upper lines): AAAATGGCAA AGAGTGGCAT TTTGGTAATT GTTTCAGCTC TTGTTGTTCT TGCAGTTTGT 1685 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAATGGCAA AGAGTGGCAT TTTGGTAATT GTTTCAGCTC TTGTTGTTCT TGCAGTTTGT 60 GGTGTTTTTG CTGAGGAGAA CGAATATGTG TTGACTTTGG ACCATTCTAA CCTCACTGAG 1745 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGTGTTTTTG CTGAGGAGAA CGAATATGTG TTGACTTTGG ACCATTCTAA CCTCACTGAG 120 ACTGTTGCTA AGCACAACTT CATTGTTGTT GAATTCTATG CACCTTGGTA AGTCATCTGC 1805 |||||||||| |||||||||| |||||||||| |||||||||| ||||||| ACTGTTGCTA AGCACAACTT CATTGTTGTT GAATTCTATG CACCTTG... .......... 167 TGTTTTTTTT TCTATTTATT TTCTTGAAAA AAGTTCATTT TTTTTGCTTG TTGAATCTGT 1865 .......... .......... .......... .......... .......... .......... 167 ATGTGCAGAA TGTAATGAAT GATTGGATGT AAGGGGTTTT GTTTTTGATC TGTTTTTTTT 1925 .......... .......... .......... .......... .......... .......... 167 TTGTTATTTT AGTGAATTTT TGCTGTAATT TTTTTGTTTT CATAAGCTGT GTGAGGAATG 1985 .......... .......... .......... .......... .......... .......... 167 CATCAAGATC AGTTCTTTAT GTTAATTTGT CTTAAAGGGT TCATCAAGGA CCCCTTTGGC 2045 .......... .......... .......... .......... .......... .......... 167 TCTACTTTGC TGTTCCTGTT TTTTTTTTTT TTTTGGAGTT TTATCTTTTT GCTGGTTTCT 2105 .......... .......... .......... .......... .......... .......... 167 CTGGCTTTAG AAACTGCATG TGCAGAAGAT AATCAATGAC TGGTTCTTTT TCTTTTGGGG 2165 .......... .......... .......... .......... .......... .......... 167 AATTTAAGGT TTTGTTATGT AAATGGTTTT TTTTTCTGAT TTTTCTGCTG TAATTTTTTA 2225 .......... .......... .......... .......... .......... .......... 167 TTTTACACAT TGACTTGAAT TTGTCTGAAA GGGTTTTTCA AGGATCCTTT TGTTGATGGA 2285 .......... .......... .......... .......... .......... .......... 167 TGTATTTTGA TTTGTGGATT GATTGAGGTT TTAAGGCTTT TTCTGTAAAA AGCTTCTTCT 2345 .......... .......... .......... .......... .......... .......... 167 TTTAATTCAT GGTTGATGCT TCTAGAATCT GGATTTGCTT GATGAGTTCT AGGTTATAAG 2405 .......... .......... .......... .......... .......... .......... 167 GTTTCCTCTT TTTATTTAAT TTGCTGCTTG TTTTTTGGTA TTTAAAATCT CTGTGTCCAG 2465 .......... .......... .......... .......... .......... .......... 167 AATTTTACAA AAATATTAAT AAATCTGGAT TTGTCTTTGT GTTCTGTGTT GCTGCAAGTT 2525 .......... .......... .......... .......... .......... .......... 167 AATGGTTTTT CCATTTCTGT GACAGTCTAG TCAATTGGAA TGTAAAATCT GTTTTTCTAT 2585 .......... .......... .......... .......... .......... .......... 167 TTTTGTGTAT GTATTTGGAT CTATGTCAAG AGGTTCCAGT GATCTGTGTT AATAGAAGTG 2645 .......... .......... .......... .......... .......... .......... 167 ATTCTTTTAG CCAAATTGTC TTCTTGTTAT GTGTAGTGGT GGATCCAATG TAATGGTACC 2705 .......... .......... .......... .......... .......... .......... 167 AGGTTCATCT GAACCTAATA GTTTCGACTC GGAGCATAAA TTTATGTGTA GGAATTCACT 2765 .......... .......... .......... .......... .......... .......... 167 AAAATTGCAA TAAATAGTAG ACATGAATGA TGTTGATGAC GACATGCTTG AGATGGTTGT 2825 .......... .......... .......... .......... .......... .......... 167 ATTAATAGCT TGCATTAGTT TCGATCTTTT CTATGGTATC AATTCCCATA GTTATACGTT 2885 .......... .......... .......... .......... .......... .......... 167 GTTGTCGAAA TGTTTATTTA GTTATTCTTT GACATGAAAT TTTTTTACTT TATGAGTAAC 2945 .......... .......... .......... .......... .......... .......... 167 TGATAATATA CTTGCAATTA CAGGTGTGGA CACTGTAAGA GTCTTGCTCC TGAGGTACAC 3005 ||||||| |||||||||| |||||||||| |||| .......... .......... ...GTGTGGA CACTGTAAGA GTCTTGCTCC TGAG...... 198 TTTCTTCTAT ACAGTGCTTA ATGAAGGAAG GAATATCATT TTTCTCTGTC ATTATGTTTT 3065 .......... .......... .......... .......... .......... .......... 198 TTCTTGGCAT TTTCAATCTA TGCAACTGAT TTAATGTTAA ATTATGTTTC TTTCCAGTAT 3125 ||| .......... .......... .......... .......... .......... .......TAT 201 GAAAAAGCTG CCTCAGAGCT GAGTAGTCAT GACCCTCCAA TTGTTCTAGC TAAGTATGAT 3185 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAAAAGCTG CCTCAGAGCT GAGTAGTCAT GACCCTCCAA TTGTTCTAGC TAAGTATGAT 261 GCAAATGATG AAGCCAATAG AGAACTTTCA AAACAGTACG AGATCCAGGG TTTCCCAACT 3245 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCAAATGATG AAGCCAATAG AGAACTTTCA AAACAGTACG AGATCCAGGG TTTCCCAACT 321 ATTAAGATAT TGAGAGATGG AGGAAAGAAA GTTCAAGACT ATAACGGTCC TCGTGAAGCA 3305 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTAAGATAT TGAGAGATGG AGGAAAGAAA GTTCAAGACT ATAACGGTCC TCGTGAAGCA 381 GCTGGTATTG TATCCTACTT GAAGAAACAA GTGGGTCCTG CATCTGCTGA AATCAAGTCG 3365 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTGGTATTG TATCCTACTT GAAGAAACAA GTGGGTCCTG CATCTGCTGA AATCAAGTCG 441 AAGGAAGATG CCACAAACCT TATTGATGAG AAAAGTATCT TTGTTGTAAG TGGTGATACT 3425 |||||||||| |||||||||| |||||||||| |||||||||| ||||| AAGGAAGATG CCACAAACCT TATTGATGAG AAAAGTATCT TTGTT..... .......... 486 TTTGATGTTT TACTTATCAT TACTGAAGTT TATTTTCAGC ATGCCATAGC TTCTTGCTGT 3485 .......... .......... .......... .......... .......... .......... 486 CTAAAATCTT TCTGTTTCTT TAGGTTGGTA TATTTCCAGA CCCCTCCGGA GAGAAATTCG 3545 ||||||| |||||||||| |||||||||| |||||||||| .......... .......... ...GTTGGTA TATTTCCAGA CCCCTCCGGA GAGAAATTCG 523 AGAACTATTT AACGCTAGCT GAA 3568 |||||||||| |||||||||| ||| AGAACTATTT AACGCTAGCT GAA 546 hqPGS_C06HBa0054K13.1-11+_SGN-E324073+ (1626 1792,2969 2999,3123 3410,3509 3568) ******************************************************************************** EST sequence 23 +strand 737 n (File: SGN-E315306+) 1 AAATGGCAAA GAGTGGCATT TTGGTAATTG TTTCAGCTCT TGTTGTTCTT GCAGTTTGTG 61 GTGTTTTTGC TGAGGAGAAC GAATATGTGT TGACTTTGGA CCATTCTAAC CTCACTGAGA 121 CTGTTGCTAA GCACAACTTC ATTGTTGTTG AATTCTATGC ACCTTGGTGT GGACACTGTA 181 AGAGTCTTGC TCCTGAGTAT GAAAAAGCTG CCTCAGAGCT GAGTAGTCAT GACCCTCCAA 241 TTGTTCTAGC TAAGTATGAT GCAAATGATG AAGCCAATAG AGAACTTTCA AAACAGTACG 301 AGATCCAGGG TTTCCCAACT ATTAAGATAT TGAGAGATGG AGGAAAGAAA GTTCAAGACT 361 ATAACGGTCC TCGTGAAGCA GCTGGTATTG TATCCTACTT GAAGAAACAA GTGGGTCCTG 421 CATCTGCTGA AATCAAGTCG AAGGAAGATG CCACAAACCT TATTGATGAG AAAAGTATCT 481 TTGTTGTTGG TATATTTCCA GACCCCTCCG GAGAGAAATT CGAGAACTAT TTAACGCTAG 541 CTGAAAAACT GCGAGGCGAG TTCGATTTTG CTCACACTGT TGATGCTAAA CACCTCCCTC 601 GGGGTGGACC AGTCAACAAG CCCACTCTTC GTCTTCTAGA GCCATTTGAT GAACTCTTTG 661 TTGATTCTGA GGACTTTGAT GTCGATGCAA TGGAGAAGTC ATCTCAGAAT CTAGTATTCC 721 TGGTGTTACT ATTTTTG Predicted gene structure (within gDNA segment 1027 to 4621): Exon 1 1627 1792 ( 166 n); cDNA 1 166 ( 166 n); score: 1.000 Intron 1 1793 2968 (1176 n); Pd: 1.000 (s: 1.00), Pa: 0.997 (s: 0) Exon 2 2969 2999 ( 31 n); cDNA 167 197 ( 31 n); score: 1.000 Intron 2 3000 3122 ( 123 n); Pd: 0.917 (s: 0), Pa: 0.997 (s: 1.00) Exon 3 3123 3410 ( 288 n); cDNA 198 485 ( 288 n); score: 1.000 Intron 3 3411 3508 ( 98 n); Pd: 0.907 (s: 1.00), Pa: 0.997 (s: 1.00) Exon 4 3509 3694 ( 186 n); cDNA 486 671 ( 186 n); score: 0.989 Intron 4 3695 3809 ( 115 n); Pd: 0.988 (s: 0.96), Pa: 0.999 (s: 0.98) Exon 5 3810 3876 ( 67 n); cDNA 672 737 ( 66 n); score: 0.970 MATCH C06HBa0054K13.1-11+ SGN-E315306+ 0.994 738 1.001 C PGS_C06HBa0054K13.1-11+_SGN-E315306+ (1627 1792,2969 2999,3123 3410,3509 3694,3810 3876) Alignment (genomic DNA sequence = upper lines): AAATGGCAAA GAGTGGCATT TTGGTAATTG TTTCAGCTCT TGTTGTTCTT GCAGTTTGTG 1686 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAATGGCAAA GAGTGGCATT TTGGTAATTG TTTCAGCTCT TGTTGTTCTT GCAGTTTGTG 60 GTGTTTTTGC TGAGGAGAAC GAATATGTGT TGACTTTGGA CCATTCTAAC CTCACTGAGA 1746 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGTTTTTGC TGAGGAGAAC GAATATGTGT TGACTTTGGA CCATTCTAAC CTCACTGAGA 120 CTGTTGCTAA GCACAACTTC ATTGTTGTTG AATTCTATGC ACCTTGGTAA GTCATCTGCT 1806 |||||||||| |||||||||| |||||||||| |||||||||| |||||| CTGTTGCTAA GCACAACTTC ATTGTTGTTG AATTCTATGC ACCTTG.... .......... 166 GTTTTTTTTT CTATTTATTT TCTTGAAAAA AGTTCATTTT TTTTGCTTGT TGAATCTGTA 1866 .......... .......... .......... .......... .......... .......... 166 TGTGCAGAAT GTAATGAATG ATTGGATGTA AGGGGTTTTG TTTTTGATCT GTTTTTTTTT 1926 .......... .......... .......... .......... .......... .......... 166 TGTTATTTTA GTGAATTTTT GCTGTAATTT TTTTGTTTTC ATAAGCTGTG TGAGGAATGC 1986 .......... .......... .......... .......... .......... .......... 166 ATCAAGATCA GTTCTTTATG TTAATTTGTC TTAAAGGGTT CATCAAGGAC CCCTTTGGCT 2046 .......... .......... .......... .......... .......... .......... 166 CTACTTTGCT GTTCCTGTTT TTTTTTTTTT TTTGGAGTTT TATCTTTTTG CTGGTTTCTC 2106 .......... .......... .......... .......... .......... .......... 166 TGGCTTTAGA AACTGCATGT GCAGAAGATA ATCAATGACT GGTTCTTTTT CTTTTGGGGA 2166 .......... .......... .......... .......... .......... .......... 166 ATTTAAGGTT TTGTTATGTA AATGGTTTTT TTTTCTGATT TTTCTGCTGT AATTTTTTAT 2226 .......... .......... .......... .......... .......... .......... 166 TTTACACATT GACTTGAATT TGTCTGAAAG GGTTTTTCAA GGATCCTTTT GTTGATGGAT 2286 .......... .......... .......... .......... .......... .......... 166 GTATTTTGAT TTGTGGATTG ATTGAGGTTT TAAGGCTTTT TCTGTAAAAA GCTTCTTCTT 2346 .......... .......... .......... .......... .......... .......... 166 TTAATTCATG GTTGATGCTT CTAGAATCTG GATTTGCTTG ATGAGTTCTA GGTTATAAGG 2406 .......... .......... .......... .......... .......... .......... 166 TTTCCTCTTT TTATTTAATT TGCTGCTTGT TTTTTGGTAT TTAAAATCTC TGTGTCCAGA 2466 .......... .......... .......... .......... .......... .......... 166 ATTTTACAAA AATATTAATA AATCTGGATT TGTCTTTGTG TTCTGTGTTG CTGCAAGTTA 2526 .......... .......... .......... .......... .......... .......... 166 ATGGTTTTTC CATTTCTGTG ACAGTCTAGT CAATTGGAAT GTAAAATCTG TTTTTCTATT 2586 .......... .......... .......... .......... .......... .......... 166 TTTGTGTATG TATTTGGATC TATGTCAAGA GGTTCCAGTG ATCTGTGTTA ATAGAAGTGA 2646 .......... .......... .......... .......... .......... .......... 166 TTCTTTTAGC CAAATTGTCT TCTTGTTATG TGTAGTGGTG GATCCAATGT AATGGTACCA 2706 .......... .......... .......... .......... .......... .......... 166 GGTTCATCTG AACCTAATAG TTTCGACTCG GAGCATAAAT TTATGTGTAG GAATTCACTA 2766 .......... .......... .......... .......... .......... .......... 166 AAATTGCAAT AAATAGTAGA CATGAATGAT GTTGATGACG ACATGCTTGA GATGGTTGTA 2826 .......... .......... .......... .......... .......... .......... 166 TTAATAGCTT GCATTAGTTT CGATCTTTTC TATGGTATCA ATTCCCATAG TTATACGTTG 2886 .......... .......... .......... .......... .......... .......... 166 TTGTCGAAAT GTTTATTTAG TTATTCTTTG ACATGAAATT TTTTTACTTT ATGAGTAACT 2946 .......... .......... .......... .......... .......... .......... 166 GATAATATAC TTGCAATTAC AGGTGTGGAC ACTGTAAGAG TCTTGCTCCT GAGGTACACT 3006 |||||||| |||||||||| |||||||||| ||| .......... .......... ..GTGTGGAC ACTGTAAGAG TCTTGCTCCT GAG....... 197 TTCTTCTATA CAGTGCTTAA TGAAGGAAGG AATATCATTT TTCTCTGTCA TTATGTTTTT 3066 .......... .......... .......... .......... .......... .......... 197 TCTTGGCATT TTCAATCTAT GCAACTGATT TAATGTTAAA TTATGTTTCT TTCCAGTATG 3126 |||| .......... .......... .......... .......... .......... ......TATG 201 AAAAAGCTGC CTCAGAGCTG AGTAGTCATG ACCCTCCAAT TGTTCTAGCT AAGTATGATG 3186 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAAAGCTGC CTCAGAGCTG AGTAGTCATG ACCCTCCAAT TGTTCTAGCT AAGTATGATG 261 CAAATGATGA AGCCAATAGA GAACTTTCAA AACAGTACGA GATCCAGGGT TTCCCAACTA 3246 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAATGATGA AGCCAATAGA GAACTTTCAA AACAGTACGA GATCCAGGGT TTCCCAACTA 321 TTAAGATATT GAGAGATGGA GGAAAGAAAG TTCAAGACTA TAACGGTCCT CGTGAAGCAG 3306 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTAAGATATT GAGAGATGGA GGAAAGAAAG TTCAAGACTA TAACGGTCCT CGTGAAGCAG 381 CTGGTATTGT ATCCTACTTG AAGAAACAAG TGGGTCCTGC ATCTGCTGAA ATCAAGTCGA 3366 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGGTATTGT ATCCTACTTG AAGAAACAAG TGGGTCCTGC ATCTGCTGAA ATCAAGTCGA 441 AGGAAGATGC CACAAACCTT ATTGATGAGA AAAGTATCTT TGTTGTAAGT GGTGATACTT 3426 |||||||||| |||||||||| |||||||||| |||||||||| |||| AGGAAGATGC CACAAACCTT ATTGATGAGA AAAGTATCTT TGTT...... .......... 485 TTGATGTTTT ACTTATCATT ACTGAAGTTT ATTTTCAGCA TGCCATAGCT TCTTGCTGTC 3486 .......... .......... .......... .......... .......... .......... 485 TAAAATCTTT CTGTTTCTTT AGGTTGGTAT ATTTCCAGAC CCCTCCGGAG AGAAATTCGA 3546 |||||||| |||||||||| |||||||||| |||||||||| .......... .......... ..GTTGGTAT ATTTCCAGAC CCCTCCGGAG AGAAATTCGA 523 GAACTATTTA ACGCTAGCTG AAAAACTGCG AGGCGAGTTC GATTTTGCTC ACACTGTTGA 3606 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAACTATTTA ACGCTAGCTG AAAAACTGCG AGGCGAGTTC GATTTTGCTC ACACTGTTGA 583 TGCTAAACAC CTCCCTCGGG GTGGACCAGT CAACAAGCCC ACTCTTCGTC TTCTAAAGCC 3666 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||| |||| TGCTAAACAC CTCCCTCGGG GTGGACCAGT CAACAAGCCC ACTCTTCGTC TTCTAGAGCC 643 ATTTGATGAA CTCTTTGTTG ATTTTGAGGT ATTACAGTTA TCTGTGTATA TTTTTATCTT 3726 |||||||||| |||||||||| ||| |||| ATTTGATGAA CTCTTTGTTG ATTCTGAG.. .......... .......... .......... 671 TGATACTCAT TGTATTATGG TTATGAGGCT CAACTCTGTC CTATGTTATC TTTTAATTGG 3786 .......... .......... .......... .......... .......... .......... 671 CCATTGATTG TACATACTTG CAGGACTTTG ATGTCGATGC AATGGAGAAG TTCATCTCAG 3846 ||||||| |||||||||| |||||||||| ||||||||| .......... .......... ...GACTTTG ATGTCGATGC AATGGAGAAG -TCATCTCAG 707 AATCTAGTAT TCCTGTTGTT ACTATTTTTG 3876 |||||||||| ||||| |||| |||||||||| AATCTAGTAT TCCTGGTGTT ACTATTTTTG 737 hqPGS_C06HBa0054K13.1-11+_SGN-E315306+ (1627 1792,2969 2999,3123 3410,3509 3694,3810 3876) ******************************************************************************** EST sequence 67 +strand 433 n (File: SGN-E324437+) 1 AAATGGCAAA GAGTGGCATT TTGGTAATTG TTTCAGCTCT TGTTGTTCTT GCAGTTTGTG 61 GTGTTTTTGC TGAGGAGAAC GAATATGTGT TGACTTTGGA CCATTCTAAC CTCACTGAGA 121 CTGTTGCTAA GCACAACTTC ATTGTTGTTG AATTCTATGC ACCTTGGTGT GGACACTGTA 181 AGAGTCTTGC TCCTGAGTAT GAAAAAGCTG CCTCAGAGCT GAGTAGTCAT GACCCTCCAA 241 TTGTTCTAGC TAAGTATGAT GCAAATGATG AAGCCAATAG AGAACTTTCA AAACAGTACG 301 AGATCCAGGG TTTCCCAACT ATTAAGATAT TGAGAGATGG AGGAAAGAAA GTTCAAGACT 361 ATAACGGTCC TCGTGAAGCA GCTGGTATTG TATCCTACTT GAAGAAACAA GTGGGTCCTG 421 CATCTGCTGA AAT Predicted gene structure (within gDNA segment 1027 to 3968): Exon 1 1627 1792 ( 166 n); cDNA 1 166 ( 166 n); score: 1.000 Intron 1 1793 2968 (1176 n); Pd: 1.000 (s: 1.00), Pa: 0.997 (s: 0) Exon 2 2969 2999 ( 31 n); cDNA 167 197 ( 31 n); score: 1.000 Intron 2 3000 3122 ( 123 n); Pd: 0.917 (s: 0), Pa: 0.997 (s: 1.00) Exon 3 3123 3358 ( 236 n); cDNA 198 433 ( 236 n); score: 1.000 MATCH C06HBa0054K13.1-11+ SGN-E324437+ 1.000 433 1.000 C PGS_C06HBa0054K13.1-11+_SGN-E324437+ (1627 1792,2969 2999,3123 3358) Alignment (genomic DNA sequence = upper lines): AAATGGCAAA GAGTGGCATT TTGGTAATTG TTTCAGCTCT TGTTGTTCTT GCAGTTTGTG 1686 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAATGGCAAA GAGTGGCATT TTGGTAATTG TTTCAGCTCT TGTTGTTCTT GCAGTTTGTG 60 GTGTTTTTGC TGAGGAGAAC GAATATGTGT TGACTTTGGA CCATTCTAAC CTCACTGAGA 1746 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGTTTTTGC TGAGGAGAAC GAATATGTGT TGACTTTGGA CCATTCTAAC CTCACTGAGA 120 CTGTTGCTAA GCACAACTTC ATTGTTGTTG AATTCTATGC ACCTTGGTAA GTCATCTGCT 1806 |||||||||| |||||||||| |||||||||| |||||||||| |||||| CTGTTGCTAA GCACAACTTC ATTGTTGTTG AATTCTATGC ACCTTG.... .......... 166 GTTTTTTTTT CTATTTATTT TCTTGAAAAA AGTTCATTTT TTTTGCTTGT TGAATCTGTA 1866 .......... .......... .......... .......... .......... .......... 166 TGTGCAGAAT GTAATGAATG ATTGGATGTA AGGGGTTTTG TTTTTGATCT GTTTTTTTTT 1926 .......... .......... .......... .......... .......... .......... 166 TGTTATTTTA GTGAATTTTT GCTGTAATTT TTTTGTTTTC ATAAGCTGTG TGAGGAATGC 1986 .......... .......... .......... .......... .......... .......... 166 ATCAAGATCA GTTCTTTATG TTAATTTGTC TTAAAGGGTT CATCAAGGAC CCCTTTGGCT 2046 .......... .......... .......... .......... .......... .......... 166 CTACTTTGCT GTTCCTGTTT TTTTTTTTTT TTTGGAGTTT TATCTTTTTG CTGGTTTCTC 2106 .......... .......... .......... .......... .......... .......... 166 TGGCTTTAGA AACTGCATGT GCAGAAGATA ATCAATGACT GGTTCTTTTT CTTTTGGGGA 2166 .......... .......... .......... .......... .......... .......... 166 ATTTAAGGTT TTGTTATGTA AATGGTTTTT TTTTCTGATT TTTCTGCTGT AATTTTTTAT 2226 .......... .......... .......... .......... .......... .......... 166 TTTACACATT GACTTGAATT TGTCTGAAAG GGTTTTTCAA GGATCCTTTT GTTGATGGAT 2286 .......... .......... .......... .......... .......... .......... 166 GTATTTTGAT TTGTGGATTG ATTGAGGTTT TAAGGCTTTT TCTGTAAAAA GCTTCTTCTT 2346 .......... .......... .......... .......... .......... .......... 166 TTAATTCATG GTTGATGCTT CTAGAATCTG GATTTGCTTG ATGAGTTCTA GGTTATAAGG 2406 .......... .......... .......... .......... .......... .......... 166 TTTCCTCTTT TTATTTAATT TGCTGCTTGT TTTTTGGTAT TTAAAATCTC TGTGTCCAGA 2466 .......... .......... .......... .......... .......... .......... 166 ATTTTACAAA AATATTAATA AATCTGGATT TGTCTTTGTG TTCTGTGTTG CTGCAAGTTA 2526 .......... .......... .......... .......... .......... .......... 166 ATGGTTTTTC CATTTCTGTG ACAGTCTAGT CAATTGGAAT GTAAAATCTG TTTTTCTATT 2586 .......... .......... .......... .......... .......... .......... 166 TTTGTGTATG TATTTGGATC TATGTCAAGA GGTTCCAGTG ATCTGTGTTA ATAGAAGTGA 2646 .......... .......... .......... .......... .......... .......... 166 TTCTTTTAGC CAAATTGTCT TCTTGTTATG TGTAGTGGTG GATCCAATGT AATGGTACCA 2706 .......... .......... .......... .......... .......... .......... 166 GGTTCATCTG AACCTAATAG TTTCGACTCG GAGCATAAAT TTATGTGTAG GAATTCACTA 2766 .......... .......... .......... .......... .......... .......... 166 AAATTGCAAT AAATAGTAGA CATGAATGAT GTTGATGACG ACATGCTTGA GATGGTTGTA 2826 .......... .......... .......... .......... .......... .......... 166 TTAATAGCTT GCATTAGTTT CGATCTTTTC TATGGTATCA ATTCCCATAG TTATACGTTG 2886 .......... .......... .......... .......... .......... .......... 166 TTGTCGAAAT GTTTATTTAG TTATTCTTTG ACATGAAATT TTTTTACTTT ATGAGTAACT 2946 .......... .......... .......... .......... .......... .......... 166 GATAATATAC TTGCAATTAC AGGTGTGGAC ACTGTAAGAG TCTTGCTCCT GAGGTACACT 3006 |||||||| |||||||||| |||||||||| ||| .......... .......... ..GTGTGGAC ACTGTAAGAG TCTTGCTCCT GAG....... 197 TTCTTCTATA CAGTGCTTAA TGAAGGAAGG AATATCATTT TTCTCTGTCA TTATGTTTTT 3066 .......... .......... .......... .......... .......... .......... 197 TCTTGGCATT TTCAATCTAT GCAACTGATT TAATGTTAAA TTATGTTTCT TTCCAGTATG 3126 |||| .......... .......... .......... .......... .......... ......TATG 201 AAAAAGCTGC CTCAGAGCTG AGTAGTCATG ACCCTCCAAT TGTTCTAGCT AAGTATGATG 3186 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAAAGCTGC CTCAGAGCTG AGTAGTCATG ACCCTCCAAT TGTTCTAGCT AAGTATGATG 261 CAAATGATGA AGCCAATAGA GAACTTTCAA AACAGTACGA GATCCAGGGT TTCCCAACTA 3246 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAATGATGA AGCCAATAGA GAACTTTCAA AACAGTACGA GATCCAGGGT TTCCCAACTA 321 TTAAGATATT GAGAGATGGA GGAAAGAAAG TTCAAGACTA TAACGGTCCT CGTGAAGCAG 3306 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTAAGATATT GAGAGATGGA GGAAAGAAAG TTCAAGACTA TAACGGTCCT CGTGAAGCAG 381 CTGGTATTGT ATCCTACTTG AAGAAACAAG TGGGTCCTGC ATCTGCTGAA AT 3358 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| || CTGGTATTGT ATCCTACTTG AAGAAACAAG TGGGTCCTGC ATCTGCTGAA AT 433 hqPGS_C06HBa0054K13.1-11+_SGN-E324437+ (1627 1792,2969 2999,3123 3358) ******************************************************************************** EST sequence 96 +strand 582 n (File: SGN-E320524+) 1 ATGGCAAAGA GTGGCATTTT GGTAATTGTT TCAGCTCTTG TTGTTCTTGC AGTTTGTGGT 61 GTTTTTGCTG AGGAGAACGA ATATGTGTTG ACTTTGGACC ATTCTAACCT CACTGAGACT 121 GTTGCTAAGC ACAACTTCAT TGTTGTTGAA TTCTATGCAC CTTGGTGTGG ACACTGTAAG 181 AGTCTTGCTC CTGAGTATGA AAAAGCTGCC TCAGAGCTGA GTAGTCATGA CCCTCCAATT 241 GTTCTAGCTA AGTATGATGC AAATGATGAA GCCAATAGAG AACTTTCAAA ACAGTACGAG 301 ATCCAGGGTT TCCCAACTAT TAAGATATTG AGAGATGGAG GAAAGAAAGT TCAAGACTAT 361 AACGGTCCTC GTGAAGCAGC TGGTATTGTA TCCTACTTGA AGAAACAAGT GGGTCCTGCA 421 TCTGCTGAAA TCAAGTCGAA GGAAGATGCC ACAAACCTTA TTGATGAGAA AAGTATCTTT 481 GTTGTTGGTA TATTTCCAGA CCCCTCCGGA GAGAAATTCG AGAACTATTT AACGCTAGCT 541 GAAAAACTGC GAGGCGAGTT CGATTTTGCT CACACTGTTG AT Predicted gene structure (within gDNA segment 1029 to 4217): Exon 1 1629 1792 ( 164 n); cDNA 1 164 ( 164 n); score: 1.000 Intron 1 1793 2968 (1176 n); Pd: 1.000 (s: 1.00), Pa: 0.997 (s: 0) Exon 2 2969 2999 ( 31 n); cDNA 165 195 ( 31 n); score: 1.000 Intron 2 3000 3122 ( 123 n); Pd: 0.917 (s: 0), Pa: 0.997 (s: 1.00) Exon 3 3123 3410 ( 288 n); cDNA 196 483 ( 288 n); score: 1.000 Intron 3 3411 3508 ( 98 n); Pd: 0.907 (s: 1.00), Pa: 0.997 (s: 1.00) Exon 4 3509 3607 ( 99 n); cDNA 484 582 ( 99 n); score: 1.000 MATCH C06HBa0054K13.1-11+ SGN-E320524+ 1.000 582 1.000 C PGS_C06HBa0054K13.1-11+_SGN-E320524+ (1629 1792,2969 2999,3123 3410,3509 3607) Alignment (genomic DNA sequence = upper lines): ATGGCAAAGA GTGGCATTTT GGTAATTGTT TCAGCTCTTG TTGTTCTTGC AGTTTGTGGT 1688 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGGCAAAGA GTGGCATTTT GGTAATTGTT TCAGCTCTTG TTGTTCTTGC AGTTTGTGGT 60 GTTTTTGCTG AGGAGAACGA ATATGTGTTG ACTTTGGACC ATTCTAACCT CACTGAGACT 1748 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTTTTGCTG AGGAGAACGA ATATGTGTTG ACTTTGGACC ATTCTAACCT CACTGAGACT 120 GTTGCTAAGC ACAACTTCAT TGTTGTTGAA TTCTATGCAC CTTGGTAAGT CATCTGCTGT 1808 |||||||||| |||||||||| |||||||||| |||||||||| |||| GTTGCTAAGC ACAACTTCAT TGTTGTTGAA TTCTATGCAC CTTG...... .......... 164 TTTTTTTTCT ATTTATTTTC TTGAAAAAAG TTCATTTTTT TTGCTTGTTG AATCTGTATG 1868 .......... .......... .......... .......... .......... .......... 164 TGCAGAATGT AATGAATGAT TGGATGTAAG GGGTTTTGTT TTTGATCTGT TTTTTTTTTG 1928 .......... .......... .......... .......... .......... .......... 164 TTATTTTAGT GAATTTTTGC TGTAATTTTT TTGTTTTCAT AAGCTGTGTG AGGAATGCAT 1988 .......... .......... .......... .......... .......... .......... 164 CAAGATCAGT TCTTTATGTT AATTTGTCTT AAAGGGTTCA TCAAGGACCC CTTTGGCTCT 2048 .......... .......... .......... .......... .......... .......... 164 ACTTTGCTGT TCCTGTTTTT TTTTTTTTTT TGGAGTTTTA TCTTTTTGCT GGTTTCTCTG 2108 .......... .......... .......... .......... .......... .......... 164 GCTTTAGAAA CTGCATGTGC AGAAGATAAT CAATGACTGG TTCTTTTTCT TTTGGGGAAT 2168 .......... .......... .......... .......... .......... .......... 164 TTAAGGTTTT GTTATGTAAA TGGTTTTTTT TTCTGATTTT TCTGCTGTAA TTTTTTATTT 2228 .......... .......... .......... .......... .......... .......... 164 TACACATTGA CTTGAATTTG TCTGAAAGGG TTTTTCAAGG ATCCTTTTGT TGATGGATGT 2288 .......... .......... .......... .......... .......... .......... 164 ATTTTGATTT GTGGATTGAT TGAGGTTTTA AGGCTTTTTC TGTAAAAAGC TTCTTCTTTT 2348 .......... .......... .......... .......... .......... .......... 164 AATTCATGGT TGATGCTTCT AGAATCTGGA TTTGCTTGAT GAGTTCTAGG TTATAAGGTT 2408 .......... .......... .......... .......... .......... .......... 164 TCCTCTTTTT ATTTAATTTG CTGCTTGTTT TTTGGTATTT AAAATCTCTG TGTCCAGAAT 2468 .......... .......... .......... .......... .......... .......... 164 TTTACAAAAA TATTAATAAA TCTGGATTTG TCTTTGTGTT CTGTGTTGCT GCAAGTTAAT 2528 .......... .......... .......... .......... .......... .......... 164 GGTTTTTCCA TTTCTGTGAC AGTCTAGTCA ATTGGAATGT AAAATCTGTT TTTCTATTTT 2588 .......... .......... .......... .......... .......... .......... 164 TGTGTATGTA TTTGGATCTA TGTCAAGAGG TTCCAGTGAT CTGTGTTAAT AGAAGTGATT 2648 .......... .......... .......... .......... .......... .......... 164 CTTTTAGCCA AATTGTCTTC TTGTTATGTG TAGTGGTGGA TCCAATGTAA TGGTACCAGG 2708 .......... .......... .......... .......... .......... .......... 164 TTCATCTGAA CCTAATAGTT TCGACTCGGA GCATAAATTT ATGTGTAGGA ATTCACTAAA 2768 .......... .......... .......... .......... .......... .......... 164 ATTGCAATAA ATAGTAGACA TGAATGATGT TGATGACGAC ATGCTTGAGA TGGTTGTATT 2828 .......... .......... .......... .......... .......... .......... 164 AATAGCTTGC ATTAGTTTCG ATCTTTTCTA TGGTATCAAT TCCCATAGTT ATACGTTGTT 2888 .......... .......... .......... .......... .......... .......... 164 GTCGAAATGT TTATTTAGTT ATTCTTTGAC ATGAAATTTT TTTACTTTAT GAGTAACTGA 2948 .......... .......... .......... .......... .......... .......... 164 TAATATACTT GCAATTACAG GTGTGGACAC TGTAAGAGTC TTGCTCCTGA GGTACACTTT 3008 |||||||||| |||||||||| |||||||||| | .......... .......... GTGTGGACAC TGTAAGAGTC TTGCTCCTGA G......... 195 CTTCTATACA GTGCTTAATG AAGGAAGGAA TATCATTTTT CTCTGTCATT ATGTTTTTTC 3068 .......... .......... .......... .......... .......... .......... 195 TTGGCATTTT CAATCTATGC AACTGATTTA ATGTTAAATT ATGTTTCTTT CCAGTATGAA 3128 |||||| .......... .......... .......... .......... .......... ....TATGAA 201 AAAGCTGCCT CAGAGCTGAG TAGTCATGAC CCTCCAATTG TTCTAGCTAA GTATGATGCA 3188 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAGCTGCCT CAGAGCTGAG TAGTCATGAC CCTCCAATTG TTCTAGCTAA GTATGATGCA 261 AATGATGAAG CCAATAGAGA ACTTTCAAAA CAGTACGAGA TCCAGGGTTT CCCAACTATT 3248 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATGATGAAG CCAATAGAGA ACTTTCAAAA CAGTACGAGA TCCAGGGTTT CCCAACTATT 321 AAGATATTGA GAGATGGAGG AAAGAAAGTT CAAGACTATA ACGGTCCTCG TGAAGCAGCT 3308 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGATATTGA GAGATGGAGG AAAGAAAGTT CAAGACTATA ACGGTCCTCG TGAAGCAGCT 381 GGTATTGTAT CCTACTTGAA GAAACAAGTG GGTCCTGCAT CTGCTGAAAT CAAGTCGAAG 3368 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGTATTGTAT CCTACTTGAA GAAACAAGTG GGTCCTGCAT CTGCTGAAAT CAAGTCGAAG 441 GAAGATGCCA CAAACCTTAT TGATGAGAAA AGTATCTTTG TTGTAAGTGG TGATACTTTT 3428 |||||||||| |||||||||| |||||||||| |||||||||| || GAAGATGCCA CAAACCTTAT TGATGAGAAA AGTATCTTTG TT........ .......... 483 GATGTTTTAC TTATCATTAC TGAAGTTTAT TTTCAGCATG CCATAGCTTC TTGCTGTCTA 3488 .......... .......... .......... .......... .......... .......... 483 AAATCTTTCT GTTTCTTTAG GTTGGTATAT TTCCAGACCC CTCCGGAGAG AAATTCGAGA 3548 |||||||||| |||||||||| |||||||||| |||||||||| .......... .......... GTTGGTATAT TTCCAGACCC CTCCGGAGAG AAATTCGAGA 523 ACTATTTAAC GCTAGCTGAA AAACTGCGAG GCGAGTTCGA TTTTGCTCAC ACTGTTGAT 3607 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| ACTATTTAAC GCTAGCTGAA AAACTGCGAG GCGAGTTCGA TTTTGCTCAC ACTGTTGAT 582 hqPGS_C06HBa0054K13.1-11+_SGN-E320524+ (1629 1792,2969 2999,3123 3410,3509 3607) ******************************************************************************** EST sequence 79 +strand 596 n (File: SGN-E320971+) 1 GGCAAAGAGT GGCATTTTGG TAATTGTTTC AGCTCTTGTT GTTCTTGCAG TTTGTGGTGT 61 TTTTGCTGAG GAGAACGAAT ATGTGTTGAC TTTGGACCAT TCTAACCTCA CTGAGACTGT 121 TGCTAAGCAC AACTTCATTG TTGTTGAATT CTATGCACCT TGGTGTGGAC ACTGTAAGAG 181 TCTTGCTCCT GAGTATGAAA AAGCTGCCTC AGAGCTGAGT AGTCATGACC CTCCAATTGT 241 TCTAGCTAAG TATGATGCAA ATGATGAAGC CAATAGAGAA CTTTCAAAAC AGTACGAGAT 301 CCAGGGTTTC CCAACTATTA AGATATTGAG AGATGGAGGA AAGAAAGTTC AAGACTATAA 361 CGGTCCTCGT GAAGCAGCTG GTATTGTATC CTACTTGAAG AAACAAGTGG GTCCTGCATC 421 TGCTGAAATC AAGTCGAAGG AAGATGCCAC AAACCTTATT GATGAGAAAA GTATCTTTGT 481 TGTTGGTATA TTTCCAGACC CCTCCGGAGA GAAATTCGAG AACTATTTAA CGCTAGCTGA 541 AAAACTGCGA GGCGAGTTCG ATTTTGCTCA CACTGTTGAT GCTAAACACC TCCCTC Predicted gene structure (within gDNA segment 1031 to 4233): Exon 1 1631 1792 ( 162 n); cDNA 1 162 ( 162 n); score: 1.000 Intron 1 1793 2968 (1176 n); Pd: 1.000 (s: 1.00), Pa: 0.997 (s: 0) Exon 2 2969 2999 ( 31 n); cDNA 163 193 ( 31 n); score: 1.000 Intron 2 3000 3122 ( 123 n); Pd: 0.917 (s: 0), Pa: 0.997 (s: 1.00) Exon 3 3123 3410 ( 288 n); cDNA 194 481 ( 288 n); score: 1.000 Intron 3 3411 3508 ( 98 n); Pd: 0.907 (s: 1.00), Pa: 0.997 (s: 1.00) Exon 4 3509 3623 ( 115 n); cDNA 482 596 ( 115 n); score: 1.000 MATCH C06HBa0054K13.1-11+ SGN-E320971+ 1.000 596 1.000 C PGS_C06HBa0054K13.1-11+_SGN-E320971+ (1631 1792,2969 2999,3123 3410,3509 3623) Alignment (genomic DNA sequence = upper lines): GGCAAAGAGT GGCATTTTGG TAATTGTTTC AGCTCTTGTT GTTCTTGCAG TTTGTGGTGT 1690 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGCAAAGAGT GGCATTTTGG TAATTGTTTC AGCTCTTGTT GTTCTTGCAG TTTGTGGTGT 60 TTTTGCTGAG GAGAACGAAT ATGTGTTGAC TTTGGACCAT TCTAACCTCA CTGAGACTGT 1750 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTTGCTGAG GAGAACGAAT ATGTGTTGAC TTTGGACCAT TCTAACCTCA CTGAGACTGT 120 TGCTAAGCAC AACTTCATTG TTGTTGAATT CTATGCACCT TGGTAAGTCA TCTGCTGTTT 1810 |||||||||| |||||||||| |||||||||| |||||||||| || TGCTAAGCAC AACTTCATTG TTGTTGAATT CTATGCACCT TG........ .......... 162 TTTTTTCTAT TTATTTTCTT GAAAAAAGTT CATTTTTTTT GCTTGTTGAA TCTGTATGTG 1870 .......... .......... .......... .......... .......... .......... 162 CAGAATGTAA TGAATGATTG GATGTAAGGG GTTTTGTTTT TGATCTGTTT TTTTTTTGTT 1930 .......... .......... .......... .......... .......... .......... 162 ATTTTAGTGA ATTTTTGCTG TAATTTTTTT GTTTTCATAA GCTGTGTGAG GAATGCATCA 1990 .......... .......... .......... .......... .......... .......... 162 AGATCAGTTC TTTATGTTAA TTTGTCTTAA AGGGTTCATC AAGGACCCCT TTGGCTCTAC 2050 .......... .......... .......... .......... .......... .......... 162 TTTGCTGTTC CTGTTTTTTT TTTTTTTTTG GAGTTTTATC TTTTTGCTGG TTTCTCTGGC 2110 .......... .......... .......... .......... .......... .......... 162 TTTAGAAACT GCATGTGCAG AAGATAATCA ATGACTGGTT CTTTTTCTTT TGGGGAATTT 2170 .......... .......... .......... .......... .......... .......... 162 AAGGTTTTGT TATGTAAATG GTTTTTTTTT CTGATTTTTC TGCTGTAATT TTTTATTTTA 2230 .......... .......... .......... .......... .......... .......... 162 CACATTGACT TGAATTTGTC TGAAAGGGTT TTTCAAGGAT CCTTTTGTTG ATGGATGTAT 2290 .......... .......... .......... .......... .......... .......... 162 TTTGATTTGT GGATTGATTG AGGTTTTAAG GCTTTTTCTG TAAAAAGCTT CTTCTTTTAA 2350 .......... .......... .......... .......... .......... .......... 162 TTCATGGTTG ATGCTTCTAG AATCTGGATT TGCTTGATGA GTTCTAGGTT ATAAGGTTTC 2410 .......... .......... .......... .......... .......... .......... 162 CTCTTTTTAT TTAATTTGCT GCTTGTTTTT TGGTATTTAA AATCTCTGTG TCCAGAATTT 2470 .......... .......... .......... .......... .......... .......... 162 TACAAAAATA TTAATAAATC TGGATTTGTC TTTGTGTTCT GTGTTGCTGC AAGTTAATGG 2530 .......... .......... .......... .......... .......... .......... 162 TTTTTCCATT TCTGTGACAG TCTAGTCAAT TGGAATGTAA AATCTGTTTT TCTATTTTTG 2590 .......... .......... .......... .......... .......... .......... 162 TGTATGTATT TGGATCTATG TCAAGAGGTT CCAGTGATCT GTGTTAATAG AAGTGATTCT 2650 .......... .......... .......... .......... .......... .......... 162 TTTAGCCAAA TTGTCTTCTT GTTATGTGTA GTGGTGGATC CAATGTAATG GTACCAGGTT 2710 .......... .......... .......... .......... .......... .......... 162 CATCTGAACC TAATAGTTTC GACTCGGAGC ATAAATTTAT GTGTAGGAAT TCACTAAAAT 2770 .......... .......... .......... .......... .......... .......... 162 TGCAATAAAT AGTAGACATG AATGATGTTG ATGACGACAT GCTTGAGATG GTTGTATTAA 2830 .......... .......... .......... .......... .......... .......... 162 TAGCTTGCAT TAGTTTCGAT CTTTTCTATG GTATCAATTC CCATAGTTAT ACGTTGTTGT 2890 .......... .......... .......... .......... .......... .......... 162 CGAAATGTTT ATTTAGTTAT TCTTTGACAT GAAATTTTTT TACTTTATGA GTAACTGATA 2950 .......... .......... .......... .......... .......... .......... 162 ATATACTTGC AATTACAGGT GTGGACACTG TAAGAGTCTT GCTCCTGAGG TACACTTTCT 3010 || |||||||||| |||||||||| ||||||||| .......... ........GT GTGGACACTG TAAGAGTCTT GCTCCTGAG. .......... 193 TCTATACAGT GCTTAATGAA GGAAGGAATA TCATTTTTCT CTGTCATTAT GTTTTTTCTT 3070 .......... .......... .......... .......... .......... .......... 193 GGCATTTTCA ATCTATGCAA CTGATTTAAT GTTAAATTAT GTTTCTTTCC AGTATGAAAA 3130 |||||||| .......... .......... .......... .......... .......... ..TATGAAAA 201 AGCTGCCTCA GAGCTGAGTA GTCATGACCC TCCAATTGTT CTAGCTAAGT ATGATGCAAA 3190 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCTGCCTCA GAGCTGAGTA GTCATGACCC TCCAATTGTT CTAGCTAAGT ATGATGCAAA 261 TGATGAAGCC AATAGAGAAC TTTCAAAACA GTACGAGATC CAGGGTTTCC CAACTATTAA 3250 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGATGAAGCC AATAGAGAAC TTTCAAAACA GTACGAGATC CAGGGTTTCC CAACTATTAA 321 GATATTGAGA GATGGAGGAA AGAAAGTTCA AGACTATAAC GGTCCTCGTG AAGCAGCTGG 3310 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATATTGAGA GATGGAGGAA AGAAAGTTCA AGACTATAAC GGTCCTCGTG AAGCAGCTGG 381 TATTGTATCC TACTTGAAGA AACAAGTGGG TCCTGCATCT GCTGAAATCA AGTCGAAGGA 3370 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATTGTATCC TACTTGAAGA AACAAGTGGG TCCTGCATCT GCTGAAATCA AGTCGAAGGA 441 AGATGCCACA AACCTTATTG ATGAGAAAAG TATCTTTGTT GTAAGTGGTG ATACTTTTGA 3430 |||||||||| |||||||||| |||||||||| |||||||||| AGATGCCACA AACCTTATTG ATGAGAAAAG TATCTTTGTT .......... .......... 481 TGTTTTACTT ATCATTACTG AAGTTTATTT TCAGCATGCC ATAGCTTCTT GCTGTCTAAA 3490 .......... .......... .......... .......... .......... .......... 481 ATCTTTCTGT TTCTTTAGGT TGGTATATTT CCAGACCCCT CCGGAGAGAA ATTCGAGAAC 3550 || |||||||||| |||||||||| |||||||||| |||||||||| .......... ........GT TGGTATATTT CCAGACCCCT CCGGAGAGAA ATTCGAGAAC 523 TATTTAACGC TAGCTGAAAA ACTGCGAGGC GAGTTCGATT TTGCTCACAC TGTTGATGCT 3610 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATTTAACGC TAGCTGAAAA ACTGCGAGGC GAGTTCGATT TTGCTCACAC TGTTGATGCT 583 AAACACCTCC CTC 3623 |||||||||| ||| AAACACCTCC CTC 596 hqPGS_C06HBa0054K13.1-11+_SGN-E320971+ (1631 1792,2969 2999,3123 3410,3509 3623) ******************************************************************************** EST sequence 117 +strand 594 n (File: SGN-E209751+) 1 CAAAGAGTGG CATTTTGGTA ATTGTTTCAG CTCTTGTTGT TCTTGCAGTT TGTGGTGTTT 61 TTGCTGAGGA GAACGAATAT GTGTTGACTT TGGACCATTC TAACCTCACT GAGACTGTTG 121 CTAAGCACAA CTTCATTGTT GTTGAATTCT ATGCACCTTG GTGTGGACAC TGTAAGAGTC 181 TTGCTCCTGA GTATGAAAAA GCTGCCTCAG AGCTGAGTAG TCATGACCCT CCAATTGTTC 241 TAGCTAAGTA TGATGCAAAT GATGAAGCCA ATAGAGAACT TTCAAAACAG TACGAGATCC 301 AGGGTTTCCC AACTATTAAG ATATTGAGAG ATGGAGGAAA GAAAGTTCAA GACTATAACG 361 GTCCTCGTGA AGCAGCTGGT ATTGTATCCT ACTTGAAGAA ACAAGTGGGT CCTGCATCTG 421 CTGAAATCAA GTCGAAGGAA GATGCCACAA ACCTTATTGA TGAGAAAAGT ATCTTTGTTG 481 TTGGTATATT TCCAGACCCC TCCGGAGAGA AATTCGAGAA CTATTTAACG CTAGCTGAAA 541 AACTGCGAGG CGAGTTCGAT TTTGCTCACA CTGTTGATGC TAAACACCTC CCTC Predicted gene structure (within gDNA segment 1033 to 4233): Exon 1 1633 1792 ( 160 n); cDNA 1 160 ( 160 n); score: 1.000 Intron 1 1793 2968 (1176 n); Pd: 1.000 (s: 1.00), Pa: 0.997 (s: 0) Exon 2 2969 2999 ( 31 n); cDNA 161 191 ( 31 n); score: 1.000 Intron 2 3000 3122 ( 123 n); Pd: 0.917 (s: 0), Pa: 0.997 (s: 1.00) Exon 3 3123 3410 ( 288 n); cDNA 192 479 ( 288 n); score: 1.000 Intron 3 3411 3508 ( 98 n); Pd: 0.907 (s: 1.00), Pa: 0.997 (s: 1.00) Exon 4 3509 3623 ( 115 n); cDNA 480 594 ( 115 n); score: 1.000 MATCH C06HBa0054K13.1-11+ SGN-E209751+ 1.000 594 1.000 C PGS_C06HBa0054K13.1-11+_SGN-E209751+ (1633 1792,2969 2999,3123 3410,3509 3623) Alignment (genomic DNA sequence = upper lines): CAAAGAGTGG CATTTTGGTA ATTGTTTCAG CTCTTGTTGT TCTTGCAGTT TGTGGTGTTT 1692 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAAGAGTGG CATTTTGGTA ATTGTTTCAG CTCTTGTTGT TCTTGCAGTT TGTGGTGTTT 60 TTGCTGAGGA GAACGAATAT GTGTTGACTT TGGACCATTC TAACCTCACT GAGACTGTTG 1752 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGCTGAGGA GAACGAATAT GTGTTGACTT TGGACCATTC TAACCTCACT GAGACTGTTG 120 CTAAGCACAA CTTCATTGTT GTTGAATTCT ATGCACCTTG GTAAGTCATC TGCTGTTTTT 1812 |||||||||| |||||||||| |||||||||| |||||||||| CTAAGCACAA CTTCATTGTT GTTGAATTCT ATGCACCTTG .......... .......... 160 TTTTCTATTT ATTTTCTTGA AAAAAGTTCA TTTTTTTTGC TTGTTGAATC TGTATGTGCA 1872 .......... .......... .......... .......... .......... .......... 160 GAATGTAATG AATGATTGGA TGTAAGGGGT TTTGTTTTTG ATCTGTTTTT TTTTTGTTAT 1932 .......... .......... .......... .......... .......... .......... 160 TTTAGTGAAT TTTTGCTGTA ATTTTTTTGT TTTCATAAGC TGTGTGAGGA ATGCATCAAG 1992 .......... .......... .......... .......... .......... .......... 160 ATCAGTTCTT TATGTTAATT TGTCTTAAAG GGTTCATCAA GGACCCCTTT GGCTCTACTT 2052 .......... .......... .......... .......... .......... .......... 160 TGCTGTTCCT GTTTTTTTTT TTTTTTTGGA GTTTTATCTT TTTGCTGGTT TCTCTGGCTT 2112 .......... .......... .......... .......... .......... .......... 160 TAGAAACTGC ATGTGCAGAA GATAATCAAT GACTGGTTCT TTTTCTTTTG GGGAATTTAA 2172 .......... .......... .......... .......... .......... .......... 160 GGTTTTGTTA TGTAAATGGT TTTTTTTTCT GATTTTTCTG CTGTAATTTT TTATTTTACA 2232 .......... .......... .......... .......... .......... .......... 160 CATTGACTTG AATTTGTCTG AAAGGGTTTT TCAAGGATCC TTTTGTTGAT GGATGTATTT 2292 .......... .......... .......... .......... .......... .......... 160 TGATTTGTGG ATTGATTGAG GTTTTAAGGC TTTTTCTGTA AAAAGCTTCT TCTTTTAATT 2352 .......... .......... .......... .......... .......... .......... 160 CATGGTTGAT GCTTCTAGAA TCTGGATTTG CTTGATGAGT TCTAGGTTAT AAGGTTTCCT 2412 .......... .......... .......... .......... .......... .......... 160 CTTTTTATTT AATTTGCTGC TTGTTTTTTG GTATTTAAAA TCTCTGTGTC CAGAATTTTA 2472 .......... .......... .......... .......... .......... .......... 160 CAAAAATATT AATAAATCTG GATTTGTCTT TGTGTTCTGT GTTGCTGCAA GTTAATGGTT 2532 .......... .......... .......... .......... .......... .......... 160 TTTCCATTTC TGTGACAGTC TAGTCAATTG GAATGTAAAA TCTGTTTTTC TATTTTTGTG 2592 .......... .......... .......... .......... .......... .......... 160 TATGTATTTG GATCTATGTC AAGAGGTTCC AGTGATCTGT GTTAATAGAA GTGATTCTTT 2652 .......... .......... .......... .......... .......... .......... 160 TAGCCAAATT GTCTTCTTGT TATGTGTAGT GGTGGATCCA ATGTAATGGT ACCAGGTTCA 2712 .......... .......... .......... .......... .......... .......... 160 TCTGAACCTA ATAGTTTCGA CTCGGAGCAT AAATTTATGT GTAGGAATTC ACTAAAATTG 2772 .......... .......... .......... .......... .......... .......... 160 CAATAAATAG TAGACATGAA TGATGTTGAT GACGACATGC TTGAGATGGT TGTATTAATA 2832 .......... .......... .......... .......... .......... .......... 160 GCTTGCATTA GTTTCGATCT TTTCTATGGT ATCAATTCCC ATAGTTATAC GTTGTTGTCG 2892 .......... .......... .......... .......... .......... .......... 160 AAATGTTTAT TTAGTTATTC TTTGACATGA AATTTTTTTA CTTTATGAGT AACTGATAAT 2952 .......... .......... .......... .......... .......... .......... 160 ATACTTGCAA TTACAGGTGT GGACACTGTA AGAGTCTTGC TCCTGAGGTA CACTTTCTTC 3012 |||| |||||||||| |||||||||| ||||||| .......... ......GTGT GGACACTGTA AGAGTCTTGC TCCTGAG... .......... 191 TATACAGTGC TTAATGAAGG AAGGAATATC ATTTTTCTCT GTCATTATGT TTTTTCTTGG 3072 .......... .......... .......... .......... .......... .......... 191 CATTTTCAAT CTATGCAACT GATTTAATGT TAAATTATGT TTCTTTCCAG TATGAAAAAG 3132 |||||||||| .......... .......... .......... .......... .......... TATGAAAAAG 201 CTGCCTCAGA GCTGAGTAGT CATGACCCTC CAATTGTTCT AGCTAAGTAT GATGCAAATG 3192 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGCCTCAGA GCTGAGTAGT CATGACCCTC CAATTGTTCT AGCTAAGTAT GATGCAAATG 261 ATGAAGCCAA TAGAGAACTT TCAAAACAGT ACGAGATCCA GGGTTTCCCA ACTATTAAGA 3252 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGAAGCCAA TAGAGAACTT TCAAAACAGT ACGAGATCCA GGGTTTCCCA ACTATTAAGA 321 TATTGAGAGA TGGAGGAAAG AAAGTTCAAG ACTATAACGG TCCTCGTGAA GCAGCTGGTA 3312 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATTGAGAGA TGGAGGAAAG AAAGTTCAAG ACTATAACGG TCCTCGTGAA GCAGCTGGTA 381 TTGTATCCTA CTTGAAGAAA CAAGTGGGTC CTGCATCTGC TGAAATCAAG TCGAAGGAAG 3372 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGTATCCTA CTTGAAGAAA CAAGTGGGTC CTGCATCTGC TGAAATCAAG TCGAAGGAAG 441 ATGCCACAAA CCTTATTGAT GAGAAAAGTA TCTTTGTTGT AAGTGGTGAT ACTTTTGATG 3432 |||||||||| |||||||||| |||||||||| |||||||| ATGCCACAAA CCTTATTGAT GAGAAAAGTA TCTTTGTT.. .......... .......... 479 TTTTACTTAT CATTACTGAA GTTTATTTTC AGCATGCCAT AGCTTCTTGC TGTCTAAAAT 3492 .......... .......... .......... .......... .......... .......... 479 CTTTCTGTTT CTTTAGGTTG GTATATTTCC AGACCCCTCC GGAGAGAAAT TCGAGAACTA 3552 |||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ......GTTG GTATATTTCC AGACCCCTCC GGAGAGAAAT TCGAGAACTA 523 TTTAACGCTA GCTGAAAAAC TGCGAGGCGA GTTCGATTTT GCTCACACTG TTGATGCTAA 3612 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTAACGCTA GCTGAAAAAC TGCGAGGCGA GTTCGATTTT GCTCACACTG TTGATGCTAA 583 ACACCTCCCT C 3623 |||||||||| | ACACCTCCCT C 594 hqPGS_C06HBa0054K13.1-11+_SGN-E209751+ (1633 1792,2969 2999,3123 3410,3509 3623) ******************************************************************************** EST sequence 104 +strand 491 n (File: SGN-E267462+) 1 AAAGAGTGGC ATTTTGGTAA TTGTTTCAGC TCTTGTTGTT CTTGCAGTTT GTGGTGTTTT 61 TGCTGAGGAG AACGAATATG TGTTGACTTT GGACCATTCT AACCTCACTG AGACTGTTGC 121 TAAGCACAAC TTCATTGTTG TTGAATTCTA TGCACCTTGG TGTGGACACT GTAAGAGTCT 181 TGCTCCTGAG TATGAAAAAG CTGCCTCAGA GCTGAGTAGT CATGACCCTC CAATTGTTCT 241 AGCTAAGTAT GATGCAAATG ATGAAGCCAA TAGAGAACTT TCAAAACAGT ACGAGATCCA 301 GGGTTTCCCA ACTATTAAGA TATTGAGAGA TGGAGGAAAG AAAGTTCAAG ACTATAACGG 361 TCCTCGTGAA GCAGCTGGTA TTGTATCCTA CTTGAAGAAA CAAGTGGGTC CTGCATCTGC 421 TGAAATCAAG TCGAAGGAAG ATGCCACAAA CCTTATTGAT GAGAAAAGTA TCTTTGTTGT 481 TGGTATATTT C Predicted gene structure (within gDNA segment 1034 to 4132): Exon 1 1634 1792 ( 159 n); cDNA 1 159 ( 159 n); score: 1.000 Intron 1 1793 2968 (1176 n); Pd: 1.000 (s: 1.00), Pa: 0.997 (s: 0) Exon 2 2969 2999 ( 31 n); cDNA 160 190 ( 31 n); score: 1.000 Intron 2 3000 3122 ( 123 n); Pd: 0.917 (s: 0), Pa: 0.997 (s: 1.00) Exon 3 3123 3410 ( 288 n); cDNA 191 478 ( 288 n); score: 1.000 Intron 3 3411 3508 ( 98 n); Pd: 0.907 (s: 1.00), Pa: 0.997 (s: 0) Exon 4 3509 3521 ( 13 n); cDNA 479 491 ( 13 n); score: 1.000 MATCH C06HBa0054K13.1-11+ SGN-E267462+ 1.000 491 1.000 C PGS_C06HBa0054K13.1-11+_SGN-E267462+ (1634 1792,2969 2999,3123 3410,3509 3521) Alignment (genomic DNA sequence = upper lines): AAAGAGTGGC ATTTTGGTAA TTGTTTCAGC TCTTGTTGTT CTTGCAGTTT GTGGTGTTTT 1693 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAGAGTGGC ATTTTGGTAA TTGTTTCAGC TCTTGTTGTT CTTGCAGTTT GTGGTGTTTT 60 TGCTGAGGAG AACGAATATG TGTTGACTTT GGACCATTCT AACCTCACTG AGACTGTTGC 1753 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCTGAGGAG AACGAATATG TGTTGACTTT GGACCATTCT AACCTCACTG AGACTGTTGC 120 TAAGCACAAC TTCATTGTTG TTGAATTCTA TGCACCTTGG TAAGTCATCT GCTGTTTTTT 1813 |||||||||| |||||||||| |||||||||| ||||||||| TAAGCACAAC TTCATTGTTG TTGAATTCTA TGCACCTTG. .......... .......... 159 TTTCTATTTA TTTTCTTGAA AAAAGTTCAT TTTTTTTGCT TGTTGAATCT GTATGTGCAG 1873 .......... .......... .......... .......... .......... .......... 159 AATGTAATGA ATGATTGGAT GTAAGGGGTT TTGTTTTTGA TCTGTTTTTT TTTTGTTATT 1933 .......... .......... .......... .......... .......... .......... 159 TTAGTGAATT TTTGCTGTAA TTTTTTTGTT TTCATAAGCT GTGTGAGGAA TGCATCAAGA 1993 .......... .......... .......... .......... .......... .......... 159 TCAGTTCTTT ATGTTAATTT GTCTTAAAGG GTTCATCAAG GACCCCTTTG GCTCTACTTT 2053 .......... .......... .......... .......... .......... .......... 159 GCTGTTCCTG TTTTTTTTTT TTTTTTGGAG TTTTATCTTT TTGCTGGTTT CTCTGGCTTT 2113 .......... .......... .......... .......... .......... .......... 159 AGAAACTGCA TGTGCAGAAG ATAATCAATG ACTGGTTCTT TTTCTTTTGG GGAATTTAAG 2173 .......... .......... .......... .......... .......... .......... 159 GTTTTGTTAT GTAAATGGTT TTTTTTTCTG ATTTTTCTGC TGTAATTTTT TATTTTACAC 2233 .......... .......... .......... .......... .......... .......... 159 ATTGACTTGA ATTTGTCTGA AAGGGTTTTT CAAGGATCCT TTTGTTGATG GATGTATTTT 2293 .......... .......... .......... .......... .......... .......... 159 GATTTGTGGA TTGATTGAGG TTTTAAGGCT TTTTCTGTAA AAAGCTTCTT CTTTTAATTC 2353 .......... .......... .......... .......... .......... .......... 159 ATGGTTGATG CTTCTAGAAT CTGGATTTGC TTGATGAGTT CTAGGTTATA AGGTTTCCTC 2413 .......... .......... .......... .......... .......... .......... 159 TTTTTATTTA ATTTGCTGCT TGTTTTTTGG TATTTAAAAT CTCTGTGTCC AGAATTTTAC 2473 .......... .......... .......... .......... .......... .......... 159 AAAAATATTA ATAAATCTGG ATTTGTCTTT GTGTTCTGTG TTGCTGCAAG TTAATGGTTT 2533 .......... .......... .......... .......... .......... .......... 159 TTCCATTTCT GTGACAGTCT AGTCAATTGG AATGTAAAAT CTGTTTTTCT ATTTTTGTGT 2593 .......... .......... .......... .......... .......... .......... 159 ATGTATTTGG ATCTATGTCA AGAGGTTCCA GTGATCTGTG TTAATAGAAG TGATTCTTTT 2653 .......... .......... .......... .......... .......... .......... 159 AGCCAAATTG TCTTCTTGTT ATGTGTAGTG GTGGATCCAA TGTAATGGTA CCAGGTTCAT 2713 .......... .......... .......... .......... .......... .......... 159 CTGAACCTAA TAGTTTCGAC TCGGAGCATA AATTTATGTG TAGGAATTCA CTAAAATTGC 2773 .......... .......... .......... .......... .......... .......... 159 AATAAATAGT AGACATGAAT GATGTTGATG ACGACATGCT TGAGATGGTT GTATTAATAG 2833 .......... .......... .......... .......... .......... .......... 159 CTTGCATTAG TTTCGATCTT TTCTATGGTA TCAATTCCCA TAGTTATACG TTGTTGTCGA 2893 .......... .......... .......... .......... .......... .......... 159 AATGTTTATT TAGTTATTCT TTGACATGAA ATTTTTTTAC TTTATGAGTA ACTGATAATA 2953 .......... .......... .......... .......... .......... .......... 159 TACTTGCAAT TACAGGTGTG GACACTGTAA GAGTCTTGCT CCTGAGGTAC ACTTTCTTCT 3013 ||||| |||||||||| |||||||||| |||||| .......... .....GTGTG GACACTGTAA GAGTCTTGCT CCTGAG.... .......... 190 ATACAGTGCT TAATGAAGGA AGGAATATCA TTTTTCTCTG TCATTATGTT TTTTCTTGGC 3073 .......... .......... .......... .......... .......... .......... 190 ATTTTCAATC TATGCAACTG ATTTAATGTT AAATTATGTT TCTTTCCAGT ATGAAAAAGC 3133 | |||||||||| .......... .......... .......... .......... .........T ATGAAAAAGC 201 TGCCTCAGAG CTGAGTAGTC ATGACCCTCC AATTGTTCTA GCTAAGTATG ATGCAAATGA 3193 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCCTCAGAG CTGAGTAGTC ATGACCCTCC AATTGTTCTA GCTAAGTATG ATGCAAATGA 261 TGAAGCCAAT AGAGAACTTT CAAAACAGTA CGAGATCCAG GGTTTCCCAA CTATTAAGAT 3253 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAAGCCAAT AGAGAACTTT CAAAACAGTA CGAGATCCAG GGTTTCCCAA CTATTAAGAT 321 ATTGAGAGAT GGAGGAAAGA AAGTTCAAGA CTATAACGGT CCTCGTGAAG CAGCTGGTAT 3313 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTGAGAGAT GGAGGAAAGA AAGTTCAAGA CTATAACGGT CCTCGTGAAG CAGCTGGTAT 381 TGTATCCTAC TTGAAGAAAC AAGTGGGTCC TGCATCTGCT GAAATCAAGT CGAAGGAAGA 3373 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTATCCTAC TTGAAGAAAC AAGTGGGTCC TGCATCTGCT GAAATCAAGT CGAAGGAAGA 441 TGCCACAAAC CTTATTGATG AGAAAAGTAT CTTTGTTGTA AGTGGTGATA CTTTTGATGT 3433 |||||||||| |||||||||| |||||||||| ||||||| TGCCACAAAC CTTATTGATG AGAAAAGTAT CTTTGTT... .......... .......... 478 TTTACTTATC ATTACTGAAG TTTATTTTCA GCATGCCATA GCTTCTTGCT GTCTAAAATC 3493 .......... .......... .......... .......... .......... .......... 478 TTTCTGTTTC TTTAGGTTGG TATATTTC 3521 ||||| |||||||| .......... .....GTTGG TATATTTC 491 hqPGS_C06HBa0054K13.1-11+_SGN-E267462+ (1634 1792,2969 2999,3123 3410,3509 3521) ******************************************************************************** EST sequence 81 +strand 488 n (File: SGN-E319413+) 1 AAAGAGTGGC ATTTTGGTAA TTGTTTCAGC TCTTGTTGTT CTTGCAGTTT GTGGTGTTTT 61 TGCTGAGGAG AACGAATATG TGTTGACTTT GGACCATTCT AACCTCACTG AGACTGTTGC 121 TAAGCACAAC TTCATTGTTG TTGAATTCTA TGCACCTTGG TGTGGACACT GTAAGAGTCT 181 TGCTCCTGAG TATGAAAAAG CTGCCTCAGA GCTGAGTAGT CATGACCCTC CAATTGTTCT 241 AGCTAAGTAT GATGCAAATG ATGAAGCCAA TAGAGAACTT TCAAAACAGT ACGAGATCCA 301 GGGTTTCCCA ACTATTAAGA TATTGAGAGA TGGAGGAAAG AAAGTTCAAG ACTATAACGG 361 TCCTCGTGAA GCAGCTGGTA TTGTATCCTA CTTGAAGAAA CAAGTGGGTC CTGCATCTGC 421 TGAAATCAAG TCGAAGGAAG ATGCCACAAA CCTTATTGAT GAGAAAAGTA TCTTTGTTGT 481 TGGTATAT Predicted gene structure (within gDNA segment 1034 to 4102): Exon 1 1634 1792 ( 159 n); cDNA 1 159 ( 159 n); score: 1.000 Intron 1 1793 2968 (1176 n); Pd: 1.000 (s: 1.00), Pa: 0.997 (s: 0) Exon 2 2969 2999 ( 31 n); cDNA 160 190 ( 31 n); score: 1.000 Intron 2 3000 3122 ( 123 n); Pd: 0.917 (s: 0), Pa: 0.997 (s: 1.00) Exon 3 3123 3410 ( 288 n); cDNA 191 478 ( 288 n); score: 1.000 Intron 3 3411 3508 ( 98 n); Pd: 0.907 (s: 1.00), Pa: 0.997 (s: 0) Exon 4 3509 3518 ( 10 n); cDNA 479 488 ( 10 n); score: 1.000 MATCH C06HBa0054K13.1-11+ SGN-E319413+ 1.000 488 1.000 C PGS_C06HBa0054K13.1-11+_SGN-E319413+ (1634 1792,2969 2999,3123 3410,3509 3518) Alignment (genomic DNA sequence = upper lines): AAAGAGTGGC ATTTTGGTAA TTGTTTCAGC TCTTGTTGTT CTTGCAGTTT GTGGTGTTTT 1693 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAGAGTGGC ATTTTGGTAA TTGTTTCAGC TCTTGTTGTT CTTGCAGTTT GTGGTGTTTT 60 TGCTGAGGAG AACGAATATG TGTTGACTTT GGACCATTCT AACCTCACTG AGACTGTTGC 1753 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCTGAGGAG AACGAATATG TGTTGACTTT GGACCATTCT AACCTCACTG AGACTGTTGC 120 TAAGCACAAC TTCATTGTTG TTGAATTCTA TGCACCTTGG TAAGTCATCT GCTGTTTTTT 1813 |||||||||| |||||||||| |||||||||| ||||||||| TAAGCACAAC TTCATTGTTG TTGAATTCTA TGCACCTTG. .......... .......... 159 TTTCTATTTA TTTTCTTGAA AAAAGTTCAT TTTTTTTGCT TGTTGAATCT GTATGTGCAG 1873 .......... .......... .......... .......... .......... .......... 159 AATGTAATGA ATGATTGGAT GTAAGGGGTT TTGTTTTTGA TCTGTTTTTT TTTTGTTATT 1933 .......... .......... .......... .......... .......... .......... 159 TTAGTGAATT TTTGCTGTAA TTTTTTTGTT TTCATAAGCT GTGTGAGGAA TGCATCAAGA 1993 .......... .......... .......... .......... .......... .......... 159 TCAGTTCTTT ATGTTAATTT GTCTTAAAGG GTTCATCAAG GACCCCTTTG GCTCTACTTT 2053 .......... .......... .......... .......... .......... .......... 159 GCTGTTCCTG TTTTTTTTTT TTTTTTGGAG TTTTATCTTT TTGCTGGTTT CTCTGGCTTT 2113 .......... .......... .......... .......... .......... .......... 159 AGAAACTGCA TGTGCAGAAG ATAATCAATG ACTGGTTCTT TTTCTTTTGG GGAATTTAAG 2173 .......... .......... .......... .......... .......... .......... 159 GTTTTGTTAT GTAAATGGTT TTTTTTTCTG ATTTTTCTGC TGTAATTTTT TATTTTACAC 2233 .......... .......... .......... .......... .......... .......... 159 ATTGACTTGA ATTTGTCTGA AAGGGTTTTT CAAGGATCCT TTTGTTGATG GATGTATTTT 2293 .......... .......... .......... .......... .......... .......... 159 GATTTGTGGA TTGATTGAGG TTTTAAGGCT TTTTCTGTAA AAAGCTTCTT CTTTTAATTC 2353 .......... .......... .......... .......... .......... .......... 159 ATGGTTGATG CTTCTAGAAT CTGGATTTGC TTGATGAGTT CTAGGTTATA AGGTTTCCTC 2413 .......... .......... .......... .......... .......... .......... 159 TTTTTATTTA ATTTGCTGCT TGTTTTTTGG TATTTAAAAT CTCTGTGTCC AGAATTTTAC 2473 .......... .......... .......... .......... .......... .......... 159 AAAAATATTA ATAAATCTGG ATTTGTCTTT GTGTTCTGTG TTGCTGCAAG TTAATGGTTT 2533 .......... .......... .......... .......... .......... .......... 159 TTCCATTTCT GTGACAGTCT AGTCAATTGG AATGTAAAAT CTGTTTTTCT ATTTTTGTGT 2593 .......... .......... .......... .......... .......... .......... 159 ATGTATTTGG ATCTATGTCA AGAGGTTCCA GTGATCTGTG TTAATAGAAG TGATTCTTTT 2653 .......... .......... .......... .......... .......... .......... 159 AGCCAAATTG TCTTCTTGTT ATGTGTAGTG GTGGATCCAA TGTAATGGTA CCAGGTTCAT 2713 .......... .......... .......... .......... .......... .......... 159 CTGAACCTAA TAGTTTCGAC TCGGAGCATA AATTTATGTG TAGGAATTCA CTAAAATTGC 2773 .......... .......... .......... .......... .......... .......... 159 AATAAATAGT AGACATGAAT GATGTTGATG ACGACATGCT TGAGATGGTT GTATTAATAG 2833 .......... .......... .......... .......... .......... .......... 159 CTTGCATTAG TTTCGATCTT TTCTATGGTA TCAATTCCCA TAGTTATACG TTGTTGTCGA 2893 .......... .......... .......... .......... .......... .......... 159 AATGTTTATT TAGTTATTCT TTGACATGAA ATTTTTTTAC TTTATGAGTA ACTGATAATA 2953 .......... .......... .......... .......... .......... .......... 159 TACTTGCAAT TACAGGTGTG GACACTGTAA GAGTCTTGCT CCTGAGGTAC ACTTTCTTCT 3013 ||||| |||||||||| |||||||||| |||||| .......... .....GTGTG GACACTGTAA GAGTCTTGCT CCTGAG.... .......... 190 ATACAGTGCT TAATGAAGGA AGGAATATCA TTTTTCTCTG TCATTATGTT TTTTCTTGGC 3073 .......... .......... .......... .......... .......... .......... 190 ATTTTCAATC TATGCAACTG ATTTAATGTT AAATTATGTT TCTTTCCAGT ATGAAAAAGC 3133 | |||||||||| .......... .......... .......... .......... .........T ATGAAAAAGC 201 TGCCTCAGAG CTGAGTAGTC ATGACCCTCC AATTGTTCTA GCTAAGTATG ATGCAAATGA 3193 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCCTCAGAG CTGAGTAGTC ATGACCCTCC AATTGTTCTA GCTAAGTATG ATGCAAATGA 261 TGAAGCCAAT AGAGAACTTT CAAAACAGTA CGAGATCCAG GGTTTCCCAA CTATTAAGAT 3253 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAAGCCAAT AGAGAACTTT CAAAACAGTA CGAGATCCAG GGTTTCCCAA CTATTAAGAT 321 ATTGAGAGAT GGAGGAAAGA AAGTTCAAGA CTATAACGGT CCTCGTGAAG CAGCTGGTAT 3313 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTGAGAGAT GGAGGAAAGA AAGTTCAAGA CTATAACGGT CCTCGTGAAG CAGCTGGTAT 381 TGTATCCTAC TTGAAGAAAC AAGTGGGTCC TGCATCTGCT GAAATCAAGT CGAAGGAAGA 3373 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTATCCTAC TTGAAGAAAC AAGTGGGTCC TGCATCTGCT GAAATCAAGT CGAAGGAAGA 441 TGCCACAAAC CTTATTGATG AGAAAAGTAT CTTTGTTGTA AGTGGTGATA CTTTTGATGT 3433 |||||||||| |||||||||| |||||||||| ||||||| TGCCACAAAC CTTATTGATG AGAAAAGTAT CTTTGTT... .......... .......... 478 TTTACTTATC ATTACTGAAG TTTATTTTCA GCATGCCATA GCTTCTTGCT GTCTAAAATC 3493 .......... .......... .......... .......... .......... .......... 478 TTTCTGTTTC TTTAGGTTGG TATAT 3518 ||||| ||||| .......... .....GTTGG TATAT 488 hqPGS_C06HBa0054K13.1-11+_SGN-E319413+ (1634 1792,2969 2999,3123 3410,3509 3518) ******************************************************************************** EST sequence 49 +strand 426 n (File: SGN-E205230+) 1 AAGAGTGGCA TTTTGGTAAT TGTTTCAGCT CTTGTTGTTC TTGCAGTTTG TGGTGTTTTT 61 GCTGAGGAGA ACGAATATGT GTTGACTTTG GACCATTCTA ACCTCACTGA GACTGTTGCT 121 AAGCACAACT TCATTGTTGT TGAATTCTAT GCACCTTGGT GTGGACACTG TAAGAGTCTT 181 GCTCCTGAGT ATGAAAAAGC TGCCTCAGAG CTGAGTAGTC ATGACCCTCC AATTGTTCTA 241 GCTAAGTATG ATGCAAATGA TGAAGCCAAT AGAGAACTTT CAAAACAGTA CGAGATCCAG 301 GGTTTCCCAA CTATTAAGAT ATTGAGAGAT GGAGGAAAGA AAGTTCAAGA CTATAACGGT 361 CCTCGTGAAG CAGCTGGTAT TGTATCCTAC TTGAAGAAAC AAGTGGGTCC TGCATCTGCT 421 GAAATC Predicted gene structure (within gDNA segment 1035 to 3969): Exon 1 1635 1792 ( 158 n); cDNA 1 158 ( 158 n); score: 1.000 Intron 1 1793 2968 (1176 n); Pd: 1.000 (s: 1.00), Pa: 0.997 (s: 0) Exon 2 2969 2999 ( 31 n); cDNA 159 189 ( 31 n); score: 1.000 Intron 2 3000 3122 ( 123 n); Pd: 0.917 (s: 0), Pa: 0.997 (s: 1.00) Exon 3 3123 3359 ( 237 n); cDNA 190 426 ( 237 n); score: 1.000 MATCH C06HBa0054K13.1-11+ SGN-E205230+ 1.000 426 1.000 C PGS_C06HBa0054K13.1-11+_SGN-E205230+ (1635 1792,2969 2999,3123 3359) Alignment (genomic DNA sequence = upper lines): AAGAGTGGCA TTTTGGTAAT TGTTTCAGCT CTTGTTGTTC TTGCAGTTTG TGGTGTTTTT 1694 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGAGTGGCA TTTTGGTAAT TGTTTCAGCT CTTGTTGTTC TTGCAGTTTG TGGTGTTTTT 60 GCTGAGGAGA ACGAATATGT GTTGACTTTG GACCATTCTA ACCTCACTGA GACTGTTGCT 1754 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTGAGGAGA ACGAATATGT GTTGACTTTG GACCATTCTA ACCTCACTGA GACTGTTGCT 120 AAGCACAACT TCATTGTTGT TGAATTCTAT GCACCTTGGT AAGTCATCTG CTGTTTTTTT 1814 |||||||||| |||||||||| |||||||||| |||||||| AAGCACAACT TCATTGTTGT TGAATTCTAT GCACCTTG.. .......... .......... 158 TTCTATTTAT TTTCTTGAAA AAAGTTCATT TTTTTTGCTT GTTGAATCTG TATGTGCAGA 1874 .......... .......... .......... .......... .......... .......... 158 ATGTAATGAA TGATTGGATG TAAGGGGTTT TGTTTTTGAT CTGTTTTTTT TTTGTTATTT 1934 .......... .......... .......... .......... .......... .......... 158 TAGTGAATTT TTGCTGTAAT TTTTTTGTTT TCATAAGCTG TGTGAGGAAT GCATCAAGAT 1994 .......... .......... .......... .......... .......... .......... 158 CAGTTCTTTA TGTTAATTTG TCTTAAAGGG TTCATCAAGG ACCCCTTTGG CTCTACTTTG 2054 .......... .......... .......... .......... .......... .......... 158 CTGTTCCTGT TTTTTTTTTT TTTTTGGAGT TTTATCTTTT TGCTGGTTTC TCTGGCTTTA 2114 .......... .......... .......... .......... .......... .......... 158 GAAACTGCAT GTGCAGAAGA TAATCAATGA CTGGTTCTTT TTCTTTTGGG GAATTTAAGG 2174 .......... .......... .......... .......... .......... .......... 158 TTTTGTTATG TAAATGGTTT TTTTTTCTGA TTTTTCTGCT GTAATTTTTT ATTTTACACA 2234 .......... .......... .......... .......... .......... .......... 158 TTGACTTGAA TTTGTCTGAA AGGGTTTTTC AAGGATCCTT TTGTTGATGG ATGTATTTTG 2294 .......... .......... .......... .......... .......... .......... 158 ATTTGTGGAT TGATTGAGGT TTTAAGGCTT TTTCTGTAAA AAGCTTCTTC TTTTAATTCA 2354 .......... .......... .......... .......... .......... .......... 158 TGGTTGATGC TTCTAGAATC TGGATTTGCT TGATGAGTTC TAGGTTATAA GGTTTCCTCT 2414 .......... .......... .......... .......... .......... .......... 158 TTTTATTTAA TTTGCTGCTT GTTTTTTGGT ATTTAAAATC TCTGTGTCCA GAATTTTACA 2474 .......... .......... .......... .......... .......... .......... 158 AAAATATTAA TAAATCTGGA TTTGTCTTTG TGTTCTGTGT TGCTGCAAGT TAATGGTTTT 2534 .......... .......... .......... .......... .......... .......... 158 TCCATTTCTG TGACAGTCTA GTCAATTGGA ATGTAAAATC TGTTTTTCTA TTTTTGTGTA 2594 .......... .......... .......... .......... .......... .......... 158 TGTATTTGGA TCTATGTCAA GAGGTTCCAG TGATCTGTGT TAATAGAAGT GATTCTTTTA 2654 .......... .......... .......... .......... .......... .......... 158 GCCAAATTGT CTTCTTGTTA TGTGTAGTGG TGGATCCAAT GTAATGGTAC CAGGTTCATC 2714 .......... .......... .......... .......... .......... .......... 158 TGAACCTAAT AGTTTCGACT CGGAGCATAA ATTTATGTGT AGGAATTCAC TAAAATTGCA 2774 .......... .......... .......... .......... .......... .......... 158 ATAAATAGTA GACATGAATG ATGTTGATGA CGACATGCTT GAGATGGTTG TATTAATAGC 2834 .......... .......... .......... .......... .......... .......... 158 TTGCATTAGT TTCGATCTTT TCTATGGTAT CAATTCCCAT AGTTATACGT TGTTGTCGAA 2894 .......... .......... .......... .......... .......... .......... 158 ATGTTTATTT AGTTATTCTT TGACATGAAA TTTTTTTACT TTATGAGTAA CTGATAATAT 2954 .......... .......... .......... .......... .......... .......... 158 ACTTGCAATT ACAGGTGTGG ACACTGTAAG AGTCTTGCTC CTGAGGTACA CTTTCTTCTA 3014 |||||| |||||||||| |||||||||| ||||| .......... ....GTGTGG ACACTGTAAG AGTCTTGCTC CTGAG..... .......... 189 TACAGTGCTT AATGAAGGAA GGAATATCAT TTTTCTCTGT CATTATGTTT TTTCTTGGCA 3074 .......... .......... .......... .......... .......... .......... 189 TTTTCAATCT ATGCAACTGA TTTAATGTTA AATTATGTTT CTTTCCAGTA TGAAAAAGCT 3134 || |||||||||| .......... .......... .......... .......... ........TA TGAAAAAGCT 201 GCCTCAGAGC TGAGTAGTCA TGACCCTCCA ATTGTTCTAG CTAAGTATGA TGCAAATGAT 3194 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCCTCAGAGC TGAGTAGTCA TGACCCTCCA ATTGTTCTAG CTAAGTATGA TGCAAATGAT 261 GAAGCCAATA GAGAACTTTC AAAACAGTAC GAGATCCAGG GTTTCCCAAC TATTAAGATA 3254 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAGCCAATA GAGAACTTTC AAAACAGTAC GAGATCCAGG GTTTCCCAAC TATTAAGATA 321 TTGAGAGATG GAGGAAAGAA AGTTCAAGAC TATAACGGTC CTCGTGAAGC AGCTGGTATT 3314 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGAGAGATG GAGGAAAGAA AGTTCAAGAC TATAACGGTC CTCGTGAAGC AGCTGGTATT 381 GTATCCTACT TGAAGAAACA AGTGGGTCCT GCATCTGCTG AAATC 3359 |||||||||| |||||||||| |||||||||| |||||||||| ||||| GTATCCTACT TGAAGAAACA AGTGGGTCCT GCATCTGCTG AAATC 426 hqPGS_C06HBa0054K13.1-11+_SGN-E205230+ (1635 1792,2969 2999,3123 3359) ******************************************************************************** EST sequence 121 +strand 472 n (File: SGN-E281719+) 1 GAGTGGCATT TTGGTAATTG TTTCAGCTCT TGTTGTTCTT GCAGTTTGTG GTGTTTTTGC 61 TGAGGAGAAC GAATATGTGT TGACTTTGGA CCATTCTAAC CTCACTGAGA CTGTTGCTAA 121 GCACAACTTC ATTGTTGTTG AATTCTATGC ACCTTGGTGT GGACACTGTA AGAGTCTTGC 181 TCCTGAGTAT GAAAAAGCTG CCTCAGAGCT GAGTAGTCAT GACCCTCCAA TTGTTCTAGC 241 TAAGTATGAT GCAAATGATG AAGCCAATAG AGAACTTTCA AAACAGTACG AGATCCAGGG 301 TTTCCCAACT ATTAAGACAT TGAGAGATGG AGGAAAGAAA GTTCAAGACT ATAACGGTCC 361 TCGTGAAGCA GCTGGTATTG TATCCTACTT GAAGAAACAA GTGGGTCCTG CATCTGCTGA 421 AATCAAGTCG AAGGAAGATG CCACAAACCT TATTGATGAG AAAAGTATCT TT Predicted gene structure (within gDNA segment 1037 to 4017): Exon 1 1637 1792 ( 156 n); cDNA 1 156 ( 156 n); score: 1.000 Intron 1 1793 2968 (1176 n); Pd: 1.000 (s: 1.00), Pa: 0.997 (s: 0) Exon 2 2969 2999 ( 31 n); cDNA 157 187 ( 31 n); score: 1.000 Intron 2 3000 3122 ( 123 n); Pd: 0.917 (s: 0), Pa: 0.997 (s: 1.00) Exon 3 3123 3407 ( 285 n); cDNA 188 472 ( 285 n); score: 0.996 MATCH C06HBa0054K13.1-11+ SGN-E281719+ 0.998 472 1.000 C PGS_C06HBa0054K13.1-11+_SGN-E281719+ (1637 1792,2969 2999,3123 3407) Alignment (genomic DNA sequence = upper lines): GAGTGGCATT TTGGTAATTG TTTCAGCTCT TGTTGTTCTT GCAGTTTGTG GTGTTTTTGC 1696 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGTGGCATT TTGGTAATTG TTTCAGCTCT TGTTGTTCTT GCAGTTTGTG GTGTTTTTGC 60 TGAGGAGAAC GAATATGTGT TGACTTTGGA CCATTCTAAC CTCACTGAGA CTGTTGCTAA 1756 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAGGAGAAC GAATATGTGT TGACTTTGGA CCATTCTAAC CTCACTGAGA CTGTTGCTAA 120 GCACAACTTC ATTGTTGTTG AATTCTATGC ACCTTGGTAA GTCATCTGCT GTTTTTTTTT 1816 |||||||||| |||||||||| |||||||||| |||||| GCACAACTTC ATTGTTGTTG AATTCTATGC ACCTTG.... .......... .......... 156 CTATTTATTT TCTTGAAAAA AGTTCATTTT TTTTGCTTGT TGAATCTGTA TGTGCAGAAT 1876 .......... .......... .......... .......... .......... .......... 156 GTAATGAATG ATTGGATGTA AGGGGTTTTG TTTTTGATCT GTTTTTTTTT TGTTATTTTA 1936 .......... .......... .......... .......... .......... .......... 156 GTGAATTTTT GCTGTAATTT TTTTGTTTTC ATAAGCTGTG TGAGGAATGC ATCAAGATCA 1996 .......... .......... .......... .......... .......... .......... 156 GTTCTTTATG TTAATTTGTC TTAAAGGGTT CATCAAGGAC CCCTTTGGCT CTACTTTGCT 2056 .......... .......... .......... .......... .......... .......... 156 GTTCCTGTTT TTTTTTTTTT TTTGGAGTTT TATCTTTTTG CTGGTTTCTC TGGCTTTAGA 2116 .......... .......... .......... .......... .......... .......... 156 AACTGCATGT GCAGAAGATA ATCAATGACT GGTTCTTTTT CTTTTGGGGA ATTTAAGGTT 2176 .......... .......... .......... .......... .......... .......... 156 TTGTTATGTA AATGGTTTTT TTTTCTGATT TTTCTGCTGT AATTTTTTAT TTTACACATT 2236 .......... .......... .......... .......... .......... .......... 156 GACTTGAATT TGTCTGAAAG GGTTTTTCAA GGATCCTTTT GTTGATGGAT GTATTTTGAT 2296 .......... .......... .......... .......... .......... .......... 156 TTGTGGATTG ATTGAGGTTT TAAGGCTTTT TCTGTAAAAA GCTTCTTCTT TTAATTCATG 2356 .......... .......... .......... .......... .......... .......... 156 GTTGATGCTT CTAGAATCTG GATTTGCTTG ATGAGTTCTA GGTTATAAGG TTTCCTCTTT 2416 .......... .......... .......... .......... .......... .......... 156 TTATTTAATT TGCTGCTTGT TTTTTGGTAT TTAAAATCTC TGTGTCCAGA ATTTTACAAA 2476 .......... .......... .......... .......... .......... .......... 156 AATATTAATA AATCTGGATT TGTCTTTGTG TTCTGTGTTG CTGCAAGTTA ATGGTTTTTC 2536 .......... .......... .......... .......... .......... .......... 156 CATTTCTGTG ACAGTCTAGT CAATTGGAAT GTAAAATCTG TTTTTCTATT TTTGTGTATG 2596 .......... .......... .......... .......... .......... .......... 156 TATTTGGATC TATGTCAAGA GGTTCCAGTG ATCTGTGTTA ATAGAAGTGA TTCTTTTAGC 2656 .......... .......... .......... .......... .......... .......... 156 CAAATTGTCT TCTTGTTATG TGTAGTGGTG GATCCAATGT AATGGTACCA GGTTCATCTG 2716 .......... .......... .......... .......... .......... .......... 156 AACCTAATAG TTTCGACTCG GAGCATAAAT TTATGTGTAG GAATTCACTA AAATTGCAAT 2776 .......... .......... .......... .......... .......... .......... 156 AAATAGTAGA CATGAATGAT GTTGATGACG ACATGCTTGA GATGGTTGTA TTAATAGCTT 2836 .......... .......... .......... .......... .......... .......... 156 GCATTAGTTT CGATCTTTTC TATGGTATCA ATTCCCATAG TTATACGTTG TTGTCGAAAT 2896 .......... .......... .......... .......... .......... .......... 156 GTTTATTTAG TTATTCTTTG ACATGAAATT TTTTTACTTT ATGAGTAACT GATAATATAC 2956 .......... .......... .......... .......... .......... .......... 156 TTGCAATTAC AGGTGTGGAC ACTGTAAGAG TCTTGCTCCT GAGGTACACT TTCTTCTATA 3016 |||||||| |||||||||| |||||||||| ||| .......... ..GTGTGGAC ACTGTAAGAG TCTTGCTCCT GAG....... .......... 187 CAGTGCTTAA TGAAGGAAGG AATATCATTT TTCTCTGTCA TTATGTTTTT TCTTGGCATT 3076 .......... .......... .......... .......... .......... .......... 187 TTCAATCTAT GCAACTGATT TAATGTTAAA TTATGTTTCT TTCCAGTATG AAAAAGCTGC 3136 |||| |||||||||| .......... .......... .......... .......... ......TATG AAAAAGCTGC 201 CTCAGAGCTG AGTAGTCATG ACCCTCCAAT TGTTCTAGCT AAGTATGATG CAAATGATGA 3196 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCAGAGCTG AGTAGTCATG ACCCTCCAAT TGTTCTAGCT AAGTATGATG CAAATGATGA 261 AGCCAATAGA GAACTTTCAA AACAGTACGA GATCCAGGGT TTCCCAACTA TTAAGATATT 3256 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||| ||| AGCCAATAGA GAACTTTCAA AACAGTACGA GATCCAGGGT TTCCCAACTA TTAAGACATT 321 GAGAGATGGA GGAAAGAAAG TTCAAGACTA TAACGGTCCT CGTGAAGCAG CTGGTATTGT 3316 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGAGATGGA GGAAAGAAAG TTCAAGACTA TAACGGTCCT CGTGAAGCAG CTGGTATTGT 381 ATCCTACTTG AAGAAACAAG TGGGTCCTGC ATCTGCTGAA ATCAAGTCGA AGGAAGATGC 3376 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCCTACTTG AAGAAACAAG TGGGTCCTGC ATCTGCTGAA ATCAAGTCGA AGGAAGATGC 441 CACAAACCTT ATTGATGAGA AAAGTATCTT T 3407 |||||||||| |||||||||| |||||||||| | CACAAACCTT ATTGATGAGA AAAGTATCTT T 472 hqPGS_C06HBa0054K13.1-11+_SGN-E281719+ (1637 1792,2969 2999,3123 3407) ******************************************************************************** EST sequence 63 +strand 340 n (File: SGN-E312782+) 1 TAGTGGCATT AAGGTAATTG GGGGAGCTTT GGGTGTTCTT GCAGGTCGCG CGTGTTTTCG 61 CTGAGGAGAA CGAATATGTG TCGACTTTGG ACCATTCTAA CCTCACTGAG ACTGTTGCTA 121 AGCACAACTT TATTGTTGTT GAATTCTATG CACCTTGGTG TGGACACTGT AAGAGTCTTG 181 CTCCTGAGTA TGAAAAAGCT GCCTCAGATC TGAGTTGTCA TGACCCTCCA ATTGTTCTAG 241 CTAAGTATGA TGCAAATGAT GAAGCCAATA GAGAACTTTC AAAACAGTTC GAGATCCATG 301 GTTTCCCAAC TATTAAGATA TTGAGAGATG GATGAAAGAA Predicted gene structure (within gDNA segment 505 to 3956): Exon 1 1638 1792 ( 155 n); cDNA 2 157 ( 156 n); score: 0.887 Intron 1 1793 2968 (1176 n); Pd: 1.000 (s: 0.98), Pa: 0.997 (s: 0) Exon 2 2969 2999 ( 31 n); cDNA 158 188 ( 31 n); score: 1.000 Intron 2 3000 3122 ( 123 n); Pd: 0.917 (s: 0), Pa: 0.997 (s: 0.96) Exon 3 3123 3274 ( 152 n); cDNA 189 340 ( 152 n); score: 0.967 MATCH C06HBa0054K13.1-11+ SGN-E312782+ 0.927 338 0.994 C PGS_C06HBa0054K13.1-11+_SGN-E312782+ (1638 1792,2969 2999,3123 3274) Alignment (genomic DNA sequence = upper lines): AGTGGCATTT TGGTAATTGT TTCAGCTCTT GTTGTTCTTG CAGTTTGTG- GTGTTTTTGC 1696 ||||||||| |||||||| |||| | | |||||||| ||| | | | ||||||| || AGTGGCATTA AGGTAATTGG GGGAGCTTTG GGTGTTCTTG CAGGTCGCGC GTGTTTTCGC 61 TGAGGAGAAC GAATATGTGT TGACTTTGGA CCATTCTAAC CTCACTGAGA CTGTTGCTAA 1756 |||||||||| |||||||||| ||||||||| |||||||||| |||||||||| |||||||||| TGAGGAGAAC GAATATGTGT CGACTTTGGA CCATTCTAAC CTCACTGAGA CTGTTGCTAA 121 GCACAACTTC ATTGTTGTTG AATTCTATGC ACCTTGGTAA GTCATCTGCT GTTTTTTTTT 1816 ||||||||| |||||||||| |||||||||| |||||| GCACAACTTT ATTGTTGTTG AATTCTATGC ACCTTG.... .......... .......... 157 CTATTTATTT TCTTGAAAAA AGTTCATTTT TTTTGCTTGT TGAATCTGTA TGTGCAGAAT 1876 .......... .......... .......... .......... .......... .......... 157 GTAATGAATG ATTGGATGTA AGGGGTTTTG TTTTTGATCT GTTTTTTTTT TGTTATTTTA 1936 .......... .......... .......... .......... .......... .......... 157 GTGAATTTTT GCTGTAATTT TTTTGTTTTC ATAAGCTGTG TGAGGAATGC ATCAAGATCA 1996 .......... .......... .......... .......... .......... .......... 157 GTTCTTTATG TTAATTTGTC TTAAAGGGTT CATCAAGGAC CCCTTTGGCT CTACTTTGCT 2056 .......... .......... .......... .......... .......... .......... 157 GTTCCTGTTT TTTTTTTTTT TTTGGAGTTT TATCTTTTTG CTGGTTTCTC TGGCTTTAGA 2116 .......... .......... .......... .......... .......... .......... 157 AACTGCATGT GCAGAAGATA ATCAATGACT GGTTCTTTTT CTTTTGGGGA ATTTAAGGTT 2176 .......... .......... .......... .......... .......... .......... 157 TTGTTATGTA AATGGTTTTT TTTTCTGATT TTTCTGCTGT AATTTTTTAT TTTACACATT 2236 .......... .......... .......... .......... .......... .......... 157 GACTTGAATT TGTCTGAAAG GGTTTTTCAA GGATCCTTTT GTTGATGGAT GTATTTTGAT 2296 .......... .......... .......... .......... .......... .......... 157 TTGTGGATTG ATTGAGGTTT TAAGGCTTTT TCTGTAAAAA GCTTCTTCTT TTAATTCATG 2356 .......... .......... .......... .......... .......... .......... 157 GTTGATGCTT CTAGAATCTG GATTTGCTTG ATGAGTTCTA GGTTATAAGG TTTCCTCTTT 2416 .......... .......... .......... .......... .......... .......... 157 TTATTTAATT TGCTGCTTGT TTTTTGGTAT TTAAAATCTC TGTGTCCAGA ATTTTACAAA 2476 .......... .......... .......... .......... .......... .......... 157 AATATTAATA AATCTGGATT TGTCTTTGTG TTCTGTGTTG CTGCAAGTTA ATGGTTTTTC 2536 .......... .......... .......... .......... .......... .......... 157 CATTTCTGTG ACAGTCTAGT CAATTGGAAT GTAAAATCTG TTTTTCTATT TTTGTGTATG 2596 .......... .......... .......... .......... .......... .......... 157 TATTTGGATC TATGTCAAGA GGTTCCAGTG ATCTGTGTTA ATAGAAGTGA TTCTTTTAGC 2656 .......... .......... .......... .......... .......... .......... 157 CAAATTGTCT TCTTGTTATG TGTAGTGGTG GATCCAATGT AATGGTACCA GGTTCATCTG 2716 .......... .......... .......... .......... .......... .......... 157 AACCTAATAG TTTCGACTCG GAGCATAAAT TTATGTGTAG GAATTCACTA AAATTGCAAT 2776 .......... .......... .......... .......... .......... .......... 157 AAATAGTAGA CATGAATGAT GTTGATGACG ACATGCTTGA GATGGTTGTA TTAATAGCTT 2836 .......... .......... .......... .......... .......... .......... 157 GCATTAGTTT CGATCTTTTC TATGGTATCA ATTCCCATAG TTATACGTTG TTGTCGAAAT 2896 .......... .......... .......... .......... .......... .......... 157 GTTTATTTAG TTATTCTTTG ACATGAAATT TTTTTACTTT ATGAGTAACT GATAATATAC 2956 .......... .......... .......... .......... .......... .......... 157 TTGCAATTAC AGGTGTGGAC ACTGTAAGAG TCTTGCTCCT GAGGTACACT TTCTTCTATA 3016 |||||||| |||||||||| |||||||||| ||| .......... ..GTGTGGAC ACTGTAAGAG TCTTGCTCCT GAG....... .......... 188 CAGTGCTTAA TGAAGGAAGG AATATCATTT TTCTCTGTCA TTATGTTTTT TCTTGGCATT 3076 .......... .......... .......... .......... .......... .......... 188 TTCAATCTAT GCAACTGATT TAATGTTAAA TTATGTTTCT TTCCAGTATG AAAAAGCTGC 3136 |||| |||||||||| .......... .......... .......... .......... ......TATG AAAAAGCTGC 202 CTCAGAGCTG AGTAGTCATG ACCCTCCAAT TGTTCTAGCT AAGTATGATG CAAATGATGA 3196 |||||| ||| ||| |||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCAGATCTG AGTTGTCATG ACCCTCCAAT TGTTCTAGCT AAGTATGATG CAAATGATGA 262 AGCCAATAGA GAACTTTCAA AACAGTACGA GATCCAGGGT TTCCCAACTA TTAAGATATT 3256 |||||||||| |||||||||| |||||| ||| |||||| ||| |||||||||| |||||||||| AGCCAATAGA GAACTTTCAA AACAGTTCGA GATCCATGGT TTCCCAACTA TTAAGATATT 322 GAGAGATGGA GGAAAGAA 3274 |||||||||| ||||||| GAGAGATGGA TGAAAGAA 340 hqPGS_C06HBa0054K13.1-11+_SGN-E312782+ (1638 1792,2969 2999,3123 3274) ******************************************************************************** EST sequence 35 +strand 801 n (File: SGN-E264187+) 1 GGCATTTTGG TAATTGTTTC AGCTCTTGTT GTTCTTGCAG TTTGTGGTGT TTTTGCTGAG 61 GAGAACGAAT ATGTGTTGAC TTTGGACCAT TCTAACCTCA CTGAGACTGT TGCTAAGCAC 121 AACTTCATTG TTGTTGAATT CTATGCACCT TGGTGTGGAC ACTGTAAGAG TCTTGCTCCT 181 GAGTATGAAA AAGCTGCCTC AGAGCTGAGT AGTCATGACC CTCCAATTGT TCTAGCTAAG 241 TATGATGCAA ATGATGAAGC CAATAGAGAA CTTTCAAAAC AGTACGAGAT CCAGGGTTTC 301 CCAACTATTA AGATATTGAG AGATGGAGGA AAGAAAGTTC AAGACTATAA CGGTCCTCGT 361 GAAGCAGCTG GTATTGTATC CTACTTGAAG AAACAAGTGG GTCCTGCATC TGCTGAAATC 421 AAGTCGAAGG AAGATGCCAC AAACCTTATT GATGAGAAAA GTATCTTTGT TGTTGGTATA 481 TTTCCAGACC CCTCCGGAGA GAAATTCGAG AACTATTTAA CGCTAGCTGA AAAACTGCGA 541 GGCGAGTTCG ATTTTGCTCA CACTGTTGAT GCTAAACACC TCCCTCGGGG TGGACCAGTC 601 AANCAGCCCA CTCTTCGTCT TCTAAAGCCA TTTGATGAAC TCTTTGTTGA TTTTGAGGAC 661 TTTGATGTCG AGGCAATGGA GAAGTTCATC TCAGAATCTA GTATTCCTGT TGGTACTATT 721 TTTGACAATG ACCCAACAAC CATCCTTATG TTACAAGTTC TTCGAAGGCA CCAACGCCAA 781 GCATTGCTAT TTGTGAACTT T Predicted gene structure (within gDNA segment 1041 to 4745): Exon 1 1641 1792 ( 152 n); cDNA 1 152 ( 152 n); score: 1.000 Intron 1 1793 2968 (1176 n); Pd: 1.000 (s: 1.00), Pa: 0.997 (s: 0) Exon 2 2969 2999 ( 31 n); cDNA 153 183 ( 31 n); score: 1.000 Intron 2 3000 3122 ( 123 n); Pd: 0.917 (s: 0), Pa: 0.997 (s: 1.00) Exon 3 3123 3410 ( 288 n); cDNA 184 471 ( 288 n); score: 1.000 Intron 3 3411 3508 ( 98 n); Pd: 0.907 (s: 1.00), Pa: 0.997 (s: 1.00) Exon 4 3509 3694 ( 186 n); cDNA 472 657 ( 186 n); score: 0.989 Intron 4 3695 3809 ( 115 n); Pd: 0.988 (s: 1.00), Pa: 0.999 (s: 0.98) Exon 5 3810 3935 ( 126 n); cDNA 658 780 ( 123 n); score: 0.960 Intron 5 3936 4129 ( 194 n); Pd: 0.981 (s: 0.94), Pa: 0.965 (s: 0) Exon 6 4130 4150 ( 21 n); cDNA 781 801 ( 21 n); score: 1.000 MATCH C06HBa0054K13.1-11+ SGN-E264187+ 0.991 804 1.004 C PGS_C06HBa0054K13.1-11+_SGN-E264187+ (1641 1792,2969 2999,3123 3410,3509 3694,3810 3935,4130 4150) Alignment (genomic DNA sequence = upper lines): GGCATTTTGG TAATTGTTTC AGCTCTTGTT GTTCTTGCAG TTTGTGGTGT TTTTGCTGAG 1700 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGCATTTTGG TAATTGTTTC AGCTCTTGTT GTTCTTGCAG TTTGTGGTGT TTTTGCTGAG 60 GAGAACGAAT ATGTGTTGAC TTTGGACCAT TCTAACCTCA CTGAGACTGT TGCTAAGCAC 1760 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGAACGAAT ATGTGTTGAC TTTGGACCAT TCTAACCTCA CTGAGACTGT TGCTAAGCAC 120 AACTTCATTG TTGTTGAATT CTATGCACCT TGGTAAGTCA TCTGCTGTTT TTTTTTCTAT 1820 |||||||||| |||||||||| |||||||||| || AACTTCATTG TTGTTGAATT CTATGCACCT TG........ .......... .......... 152 TTATTTTCTT GAAAAAAGTT CATTTTTTTT GCTTGTTGAA TCTGTATGTG CAGAATGTAA 1880 .......... .......... .......... .......... .......... .......... 152 TGAATGATTG GATGTAAGGG GTTTTGTTTT TGATCTGTTT TTTTTTTGTT ATTTTAGTGA 1940 .......... .......... .......... .......... .......... .......... 152 ATTTTTGCTG TAATTTTTTT GTTTTCATAA GCTGTGTGAG GAATGCATCA AGATCAGTTC 2000 .......... .......... .......... .......... .......... .......... 152 TTTATGTTAA TTTGTCTTAA AGGGTTCATC AAGGACCCCT TTGGCTCTAC TTTGCTGTTC 2060 .......... .......... .......... .......... .......... .......... 152 CTGTTTTTTT TTTTTTTTTG GAGTTTTATC TTTTTGCTGG TTTCTCTGGC TTTAGAAACT 2120 .......... .......... .......... .......... .......... .......... 152 GCATGTGCAG AAGATAATCA ATGACTGGTT CTTTTTCTTT TGGGGAATTT AAGGTTTTGT 2180 .......... .......... .......... .......... .......... .......... 152 TATGTAAATG GTTTTTTTTT CTGATTTTTC TGCTGTAATT TTTTATTTTA CACATTGACT 2240 .......... .......... .......... .......... .......... .......... 152 TGAATTTGTC TGAAAGGGTT TTTCAAGGAT CCTTTTGTTG ATGGATGTAT TTTGATTTGT 2300 .......... .......... .......... .......... .......... .......... 152 GGATTGATTG AGGTTTTAAG GCTTTTTCTG TAAAAAGCTT CTTCTTTTAA TTCATGGTTG 2360 .......... .......... .......... .......... .......... .......... 152 ATGCTTCTAG AATCTGGATT TGCTTGATGA GTTCTAGGTT ATAAGGTTTC CTCTTTTTAT 2420 .......... .......... .......... .......... .......... .......... 152 TTAATTTGCT GCTTGTTTTT TGGTATTTAA AATCTCTGTG TCCAGAATTT TACAAAAATA 2480 .......... .......... .......... .......... .......... .......... 152 TTAATAAATC TGGATTTGTC TTTGTGTTCT GTGTTGCTGC AAGTTAATGG TTTTTCCATT 2540 .......... .......... .......... .......... .......... .......... 152 TCTGTGACAG TCTAGTCAAT TGGAATGTAA AATCTGTTTT TCTATTTTTG TGTATGTATT 2600 .......... .......... .......... .......... .......... .......... 152 TGGATCTATG TCAAGAGGTT CCAGTGATCT GTGTTAATAG AAGTGATTCT TTTAGCCAAA 2660 .......... .......... .......... .......... .......... .......... 152 TTGTCTTCTT GTTATGTGTA GTGGTGGATC CAATGTAATG GTACCAGGTT CATCTGAACC 2720 .......... .......... .......... .......... .......... .......... 152 TAATAGTTTC GACTCGGAGC ATAAATTTAT GTGTAGGAAT TCACTAAAAT TGCAATAAAT 2780 .......... .......... .......... .......... .......... .......... 152 AGTAGACATG AATGATGTTG ATGACGACAT GCTTGAGATG GTTGTATTAA TAGCTTGCAT 2840 .......... .......... .......... .......... .......... .......... 152 TAGTTTCGAT CTTTTCTATG GTATCAATTC CCATAGTTAT ACGTTGTTGT CGAAATGTTT 2900 .......... .......... .......... .......... .......... .......... 152 ATTTAGTTAT TCTTTGACAT GAAATTTTTT TACTTTATGA GTAACTGATA ATATACTTGC 2960 .......... .......... .......... .......... .......... .......... 152 AATTACAGGT GTGGACACTG TAAGAGTCTT GCTCCTGAGG TACACTTTCT TCTATACAGT 3020 || |||||||||| |||||||||| ||||||||| ........GT GTGGACACTG TAAGAGTCTT GCTCCTGAG. .......... .......... 183 GCTTAATGAA GGAAGGAATA TCATTTTTCT CTGTCATTAT GTTTTTTCTT GGCATTTTCA 3080 .......... .......... .......... .......... .......... .......... 183 ATCTATGCAA CTGATTTAAT GTTAAATTAT GTTTCTTTCC AGTATGAAAA AGCTGCCTCA 3140 |||||||| |||||||||| .......... .......... .......... .......... ..TATGAAAA AGCTGCCTCA 201 GAGCTGAGTA GTCATGACCC TCCAATTGTT CTAGCTAAGT ATGATGCAAA TGATGAAGCC 3200 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGCTGAGTA GTCATGACCC TCCAATTGTT CTAGCTAAGT ATGATGCAAA TGATGAAGCC 261 AATAGAGAAC TTTCAAAACA GTACGAGATC CAGGGTTTCC CAACTATTAA GATATTGAGA 3260 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATAGAGAAC TTTCAAAACA GTACGAGATC CAGGGTTTCC CAACTATTAA GATATTGAGA 321 GATGGAGGAA AGAAAGTTCA AGACTATAAC GGTCCTCGTG AAGCAGCTGG TATTGTATCC 3320 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATGGAGGAA AGAAAGTTCA AGACTATAAC GGTCCTCGTG AAGCAGCTGG TATTGTATCC 381 TACTTGAAGA AACAAGTGGG TCCTGCATCT GCTGAAATCA AGTCGAAGGA AGATGCCACA 3380 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TACTTGAAGA AACAAGTGGG TCCTGCATCT GCTGAAATCA AGTCGAAGGA AGATGCCACA 441 AACCTTATTG ATGAGAAAAG TATCTTTGTT GTAAGTGGTG ATACTTTTGA TGTTTTACTT 3440 |||||||||| |||||||||| |||||||||| AACCTTATTG ATGAGAAAAG TATCTTTGTT .......... .......... .......... 471 ATCATTACTG AAGTTTATTT TCAGCATGCC ATAGCTTCTT GCTGTCTAAA ATCTTTCTGT 3500 .......... .......... .......... .......... .......... .......... 471 TTCTTTAGGT TGGTATATTT CCAGACCCCT CCGGAGAGAA ATTCGAGAAC TATTTAACGC 3560 || |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ........GT TGGTATATTT CCAGACCCCT CCGGAGAGAA ATTCGAGAAC TATTTAACGC 523 TAGCTGAAAA ACTGCGAGGC GAGTTCGATT TTGCTCACAC TGTTGATGCT AAACACCTCC 3620 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAGCTGAAAA ACTGCGAGGC GAGTTCGATT TTGCTCACAC TGTTGATGCT AAACACCTCC 583 CTCGGGGTGG ACCAGTCAAC AAGCCCACTC TTCGTCTTCT AAAGCCATTT GATGAACTCT 3680 |||||||||| ||||||||| ||||||||| |||||||||| |||||||||| |||||||||| CTCGGGGTGG ACCAGTCAAN CAGCCCACTC TTCGTCTTCT AAAGCCATTT GATGAACTCT 643 TTGTTGATTT TGAGGTATTA CAGTTATCTG TGTATATTTT TATCTTTGAT ACTCATTGTA 3740 |||||||||| |||| TTGTTGATTT TGAG...... .......... .......... .......... .......... 657 TTATGGTTAT GAGGCTCAAC TCTGTCCTAT GTTATCTTTT AATTGGCCAT TGATTGTACA 3800 .......... .......... .......... .......... .......... .......... 657 TACTTGCAGG ACTTTGATGT CGATGCAATG GAGAAGTTCA TCTCAGAATC TAGTATTCCT 3860 | |||||||||| ||| |||||| |||||||||| |||||||||| |||||||||| .........G ACTTTGATGT CGAGGCAATG GAGAAGTTCA TCTCAGAATC TAGTATTCCT 708 GTTGTTACTA TTTTTGACAA TGACCCAAAC AACCATCCTT ATGTTAACAA GTTCTTCGAA 3920 |||| ||||| |||||||||| |||||| ||| |||||||||| ||||| |||| |||||||||| GTTGGTACTA TTTTTGACAA TGACCC-AAC AACCATCCTT ATGTT-ACAA GTTCTTCGAA 766 GGCACCAACG CCAAGGTACT TGATTCTGCG AGCTGTAATG CTTCAATTTG ACCTTATATT 3980 |||||||||| |||| GGCACCAACG CCAA-..... .......... .......... .......... .......... 780 TCAACGTCAA GCAATTCTAG GATCTTCTCA TGAATTTTAC AGTTATATGC TTGTACTTGT 4040 .......... .......... .......... .......... .......... .......... 780 ATTATTTTCT TTTCATTCAC TAATATTTGA CAATTAACTT CAAAGTTCTA AGAGATTGAT 4100 .......... .......... .......... .......... .......... .......... 780 TTGTTTTTTT GACATTTGCA AATCTACAGG CATTGCTATT TGTGAACTTT 4150 | |||||||||| |||||||||| .......... .......... .........G CATTGCTATT TGTGAACTTT 801 hqPGS_C06HBa0054K13.1-11+_SGN-E264187+ (1641 1792,2969 2999,3123 3410,3509 3694,3810 3935,4130 4150) ******************************************************************************** EST sequence 2 +strand 750 n (File: SGN-E262345+) 1 GGCATTTTGG TAATTGTTTC AGCTCTTGTT GTTCTTGCAG TTTGTGGTGT TTTTGCTGAG 61 GAGAACGAAT ATGTGTTGAC TTTGGACCAT TCTAACCTCA CTGAGACTGT TGCTAAGCAC 121 AACTTCATTG TTGTTGAATT CTATGCACCT TGGTGTGGAC ACTGTAAGAG TCTTGCTCCT 181 GAGTATGAAA AAGCTGCCTC AGAGCTGAGT AGTCATGACC CTCCAATTGT TCTAGCTAAG 241 TATGATGCAA ATGATGAAGC CAATAGAGAA CTTTCAAAAC AGTACGAGAT CCAGGGTTTC 301 CCAACTATTA AGATATTGAG AGATGGAGGA AAGAAAGTTC AAGACTATAA CGGTCCTCGT 361 GAAGCAGCTG GTATTGTATC CTACTTGAAG AAACAAGTGG GTCCTGCATC TGCTGAAATC 421 AAGTCGAAGG AAGATGCCAC AAACCTTATT GATGAGAAAA GTATCTTTGT TGTTGGTATA 481 TTTCCAGACC CCTCCGGAGA GAAATTCGAG AACTATTTAA CGCTAGCTGA AAAACTGCGA 541 GGCGAGTTCG ATTTTGCTCA CACTGTTGAT GCTAAACACC TCCCTCGGGG TGGACCAGTC 601 AACAAGCCCA CTCTTCGTCT TCTAAAGCCA TTTGATGAAC TCTTTGTTGA TTTTGAGGAC 661 TTTGATGTCG ATGCAATGGA GAAGTTCATC TCAGAATCTA GTATTCCTGG TGTTACTATT 721 TTTGACAATG ACCCAAACAA CCATCCTTAT Predicted gene structure (within gDNA segment 1041 to 4512): Exon 1 1641 1792 ( 152 n); cDNA 1 152 ( 152 n); score: 1.000 Intron 1 1793 2968 (1176 n); Pd: 1.000 (s: 1.00), Pa: 0.997 (s: 0) Exon 2 2969 2999 ( 31 n); cDNA 153 183 ( 31 n); score: 1.000 Intron 2 3000 3122 ( 123 n); Pd: 0.917 (s: 0), Pa: 0.997 (s: 1.00) Exon 3 3123 3410 ( 288 n); cDNA 184 471 ( 288 n); score: 1.000 Intron 3 3411 3508 ( 98 n); Pd: 0.907 (s: 1.00), Pa: 0.997 (s: 1.00) Exon 4 3509 3694 ( 186 n); cDNA 472 657 ( 186 n); score: 1.000 Intron 4 3695 3809 ( 115 n); Pd: 0.988 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 5 3810 3902 ( 93 n); cDNA 658 750 ( 93 n); score: 0.989 MATCH C06HBa0054K13.1-11+ SGN-E262345+ 0.999 750 1.000 C PGS_C06HBa0054K13.1-11+_SGN-E262345+ (1641 1792,2969 2999,3123 3410,3509 3694,3810 3902) Alignment (genomic DNA sequence = upper lines): GGCATTTTGG TAATTGTTTC AGCTCTTGTT GTTCTTGCAG TTTGTGGTGT TTTTGCTGAG 1700 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGCATTTTGG TAATTGTTTC AGCTCTTGTT GTTCTTGCAG TTTGTGGTGT TTTTGCTGAG 60 GAGAACGAAT ATGTGTTGAC TTTGGACCAT TCTAACCTCA CTGAGACTGT TGCTAAGCAC 1760 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGAACGAAT ATGTGTTGAC TTTGGACCAT TCTAACCTCA CTGAGACTGT TGCTAAGCAC 120 AACTTCATTG TTGTTGAATT CTATGCACCT TGGTAAGTCA TCTGCTGTTT TTTTTTCTAT 1820 |||||||||| |||||||||| |||||||||| || AACTTCATTG TTGTTGAATT CTATGCACCT TG........ .......... .......... 152 TTATTTTCTT GAAAAAAGTT CATTTTTTTT GCTTGTTGAA TCTGTATGTG CAGAATGTAA 1880 .......... .......... .......... .......... .......... .......... 152 TGAATGATTG GATGTAAGGG GTTTTGTTTT TGATCTGTTT TTTTTTTGTT ATTTTAGTGA 1940 .......... .......... .......... .......... .......... .......... 152 ATTTTTGCTG TAATTTTTTT GTTTTCATAA GCTGTGTGAG GAATGCATCA AGATCAGTTC 2000 .......... .......... .......... .......... .......... .......... 152 TTTATGTTAA TTTGTCTTAA AGGGTTCATC AAGGACCCCT TTGGCTCTAC TTTGCTGTTC 2060 .......... .......... .......... .......... .......... .......... 152 CTGTTTTTTT TTTTTTTTTG GAGTTTTATC TTTTTGCTGG TTTCTCTGGC TTTAGAAACT 2120 .......... .......... .......... .......... .......... .......... 152 GCATGTGCAG AAGATAATCA ATGACTGGTT CTTTTTCTTT TGGGGAATTT AAGGTTTTGT 2180 .......... .......... .......... .......... .......... .......... 152 TATGTAAATG GTTTTTTTTT CTGATTTTTC TGCTGTAATT TTTTATTTTA CACATTGACT 2240 .......... .......... .......... .......... .......... .......... 152 TGAATTTGTC TGAAAGGGTT TTTCAAGGAT CCTTTTGTTG ATGGATGTAT TTTGATTTGT 2300 .......... .......... .......... .......... .......... .......... 152 GGATTGATTG AGGTTTTAAG GCTTTTTCTG TAAAAAGCTT CTTCTTTTAA TTCATGGTTG 2360 .......... .......... .......... .......... .......... .......... 152 ATGCTTCTAG AATCTGGATT TGCTTGATGA GTTCTAGGTT ATAAGGTTTC CTCTTTTTAT 2420 .......... .......... .......... .......... .......... .......... 152 TTAATTTGCT GCTTGTTTTT TGGTATTTAA AATCTCTGTG TCCAGAATTT TACAAAAATA 2480 .......... .......... .......... .......... .......... .......... 152 TTAATAAATC TGGATTTGTC TTTGTGTTCT GTGTTGCTGC AAGTTAATGG TTTTTCCATT 2540 .......... .......... .......... .......... .......... .......... 152 TCTGTGACAG TCTAGTCAAT TGGAATGTAA AATCTGTTTT TCTATTTTTG TGTATGTATT 2600 .......... .......... .......... .......... .......... .......... 152 TGGATCTATG TCAAGAGGTT CCAGTGATCT GTGTTAATAG AAGTGATTCT TTTAGCCAAA 2660 .......... .......... .......... .......... .......... .......... 152 TTGTCTTCTT GTTATGTGTA GTGGTGGATC CAATGTAATG GTACCAGGTT CATCTGAACC 2720 .......... .......... .......... .......... .......... .......... 152 TAATAGTTTC GACTCGGAGC ATAAATTTAT GTGTAGGAAT TCACTAAAAT TGCAATAAAT 2780 .......... .......... .......... .......... .......... .......... 152 AGTAGACATG AATGATGTTG ATGACGACAT GCTTGAGATG GTTGTATTAA TAGCTTGCAT 2840 .......... .......... .......... .......... .......... .......... 152 TAGTTTCGAT CTTTTCTATG GTATCAATTC CCATAGTTAT ACGTTGTTGT CGAAATGTTT 2900 .......... .......... .......... .......... .......... .......... 152 ATTTAGTTAT TCTTTGACAT GAAATTTTTT TACTTTATGA GTAACTGATA ATATACTTGC 2960 .......... .......... .......... .......... .......... .......... 152 AATTACAGGT GTGGACACTG TAAGAGTCTT GCTCCTGAGG TACACTTTCT TCTATACAGT 3020 || |||||||||| |||||||||| ||||||||| ........GT GTGGACACTG TAAGAGTCTT GCTCCTGAG. .......... .......... 183 GCTTAATGAA GGAAGGAATA TCATTTTTCT CTGTCATTAT GTTTTTTCTT GGCATTTTCA 3080 .......... .......... .......... .......... .......... .......... 183 ATCTATGCAA CTGATTTAAT GTTAAATTAT GTTTCTTTCC AGTATGAAAA AGCTGCCTCA 3140 |||||||| |||||||||| .......... .......... .......... .......... ..TATGAAAA AGCTGCCTCA 201 GAGCTGAGTA GTCATGACCC TCCAATTGTT CTAGCTAAGT ATGATGCAAA TGATGAAGCC 3200 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGCTGAGTA GTCATGACCC TCCAATTGTT CTAGCTAAGT ATGATGCAAA TGATGAAGCC 261 AATAGAGAAC TTTCAAAACA GTACGAGATC CAGGGTTTCC CAACTATTAA GATATTGAGA 3260 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATAGAGAAC TTTCAAAACA GTACGAGATC CAGGGTTTCC CAACTATTAA GATATTGAGA 321 GATGGAGGAA AGAAAGTTCA AGACTATAAC GGTCCTCGTG AAGCAGCTGG TATTGTATCC 3320 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATGGAGGAA AGAAAGTTCA AGACTATAAC GGTCCTCGTG AAGCAGCTGG TATTGTATCC 381 TACTTGAAGA AACAAGTGGG TCCTGCATCT GCTGAAATCA AGTCGAAGGA AGATGCCACA 3380 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TACTTGAAGA AACAAGTGGG TCCTGCATCT GCTGAAATCA AGTCGAAGGA AGATGCCACA 441 AACCTTATTG ATGAGAAAAG TATCTTTGTT GTAAGTGGTG ATACTTTTGA TGTTTTACTT 3440 |||||||||| |||||||||| |||||||||| AACCTTATTG ATGAGAAAAG TATCTTTGTT .......... .......... .......... 471 ATCATTACTG AAGTTTATTT TCAGCATGCC ATAGCTTCTT GCTGTCTAAA ATCTTTCTGT 3500 .......... .......... .......... .......... .......... .......... 471 TTCTTTAGGT TGGTATATTT CCAGACCCCT CCGGAGAGAA ATTCGAGAAC TATTTAACGC 3560 || |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ........GT TGGTATATTT CCAGACCCCT CCGGAGAGAA ATTCGAGAAC TATTTAACGC 523 TAGCTGAAAA ACTGCGAGGC GAGTTCGATT TTGCTCACAC TGTTGATGCT AAACACCTCC 3620 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAGCTGAAAA ACTGCGAGGC GAGTTCGATT TTGCTCACAC TGTTGATGCT AAACACCTCC 583 CTCGGGGTGG ACCAGTCAAC AAGCCCACTC TTCGTCTTCT AAAGCCATTT GATGAACTCT 3680 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCGGGGTGG ACCAGTCAAC AAGCCCACTC TTCGTCTTCT AAAGCCATTT GATGAACTCT 643 TTGTTGATTT TGAGGTATTA CAGTTATCTG TGTATATTTT TATCTTTGAT ACTCATTGTA 3740 |||||||||| |||| TTGTTGATTT TGAG...... .......... .......... .......... .......... 657 TTATGGTTAT GAGGCTCAAC TCTGTCCTAT GTTATCTTTT AATTGGCCAT TGATTGTACA 3800 .......... .......... .......... .......... .......... .......... 657 TACTTGCAGG ACTTTGATGT CGATGCAATG GAGAAGTTCA TCTCAGAATC TAGTATTCCT 3860 | |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .........G ACTTTGATGT CGATGCAATG GAGAAGTTCA TCTCAGAATC TAGTATTCCT 708 GTTGTTACTA TTTTTGACAA TGACCCAAAC AACCATCCTT AT 3902 | |||||||| |||||||||| |||||||||| |||||||||| || GGTGTTACTA TTTTTGACAA TGACCCAAAC AACCATCCTT AT 750 hqPGS_C06HBa0054K13.1-11+_SGN-E262345+ (1641 1792,2969 2999,3123 3410,3509 3694,3810 3902) ******************************************************************************** EST sequence 62 +strand 530 n (File: SGN-E324253+) 1 GGCATTTTGG TAATTGTTTC AGCGTCTTGT TGTTCTTGCA GTTTGTGGTG TTTTTGCTGA 61 GGAGAACGAA TATGTGTTGA CTTTGGACCA TTCTAACCTC ACTGAGACTG TTGCTAAGCA 121 CAACTTCATT GTTGTTGAAT TCTATGCACC TTGGTGTGGA CACTGTAAGA GTCTTGCTCC 181 TGAGTATGAA AAAGCTGCCT CAGAGCTGAG TAGTCATGAC CCTCCAATTG TTCTAGCTAA 241 GTATGATGCA AATGATGAAG CCAATAGAGA ACTTTCAAAA CAGTACGAGA TCCAGGGTTT 301 CCCAACTATT AAGATATTGA GAGATGGAGG AAAGAAAGTT CAAGACTATA ACGGTCCTCG 361 TGAAGCAGCT GGTATTGTAT CCTACTTGAA GAAACAAGTG GGTCCTGCAT CTGCTGAAAT 421 CAAGTCGAAG GAAGATGCCA CAAACCTTAT TGATGAGAAA AGTATCTNTG TTGTTGGTAT 481 ATTTCCAGAC CCCTCCGGAG AGAAATTCGA GAACTATTTA ACGCTAGCTG Predicted gene structure (within gDNA segment 1041 to 4176): Exon 1 1641 1792 ( 152 n); cDNA 1 153 ( 153 n); score: 0.984 Intron 1 1793 2968 (1176 n); Pd: 1.000 (s: 1.00), Pa: 0.997 (s: 0) Exon 2 2969 2999 ( 31 n); cDNA 154 184 ( 31 n); score: 1.000 Intron 2 3000 3122 ( 123 n); Pd: 0.917 (s: 0), Pa: 0.997 (s: 1.00) Exon 3 3123 3410 ( 288 n); cDNA 185 472 ( 288 n); score: 0.997 Intron 3 3411 3508 ( 98 n); Pd: 0.907 (s: 0.98), Pa: 0.997 (s: 1.00) Exon 4 3509 3566 ( 58 n); cDNA 473 530 ( 58 n); score: 1.000 MATCH C06HBa0054K13.1-11+ SGN-E324253+ 0.993 529 0.998 C PGS_C06HBa0054K13.1-11+_SGN-E324253+ (1641 1792,2969 2999,3123 3410,3509 3566) Alignment (genomic DNA sequence = upper lines): GGCATTTTGG TAATTGTTTC AGC-TCTTGT TGTTCTTGCA GTTTGTGGTG TTTTTGCTGA 1699 |||||||||| |||||||||| ||| |||||| |||||||||| |||||||||| |||||||||| GGCATTTTGG TAATTGTTTC AGCGTCTTGT TGTTCTTGCA GTTTGTGGTG TTTTTGCTGA 60 GGAGAACGAA TATGTGTTGA CTTTGGACCA TTCTAACCTC ACTGAGACTG TTGCTAAGCA 1759 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGAGAACGAA TATGTGTTGA CTTTGGACCA TTCTAACCTC ACTGAGACTG TTGCTAAGCA 120 CAACTTCATT GTTGTTGAAT TCTATGCACC TTGGTAAGTC ATCTGCTGTT TTTTTTTCTA 1819 |||||||||| |||||||||| |||||||||| ||| CAACTTCATT GTTGTTGAAT TCTATGCACC TTG....... .......... .......... 153 TTTATTTTCT TGAAAAAAGT TCATTTTTTT TGCTTGTTGA ATCTGTATGT GCAGAATGTA 1879 .......... .......... .......... .......... .......... .......... 153 ATGAATGATT GGATGTAAGG GGTTTTGTTT TTGATCTGTT TTTTTTTTGT TATTTTAGTG 1939 .......... .......... .......... .......... .......... .......... 153 AATTTTTGCT GTAATTTTTT TGTTTTCATA AGCTGTGTGA GGAATGCATC AAGATCAGTT 1999 .......... .......... .......... .......... .......... .......... 153 CTTTATGTTA ATTTGTCTTA AAGGGTTCAT CAAGGACCCC TTTGGCTCTA CTTTGCTGTT 2059 .......... .......... .......... .......... .......... .......... 153 CCTGTTTTTT TTTTTTTTTT GGAGTTTTAT CTTTTTGCTG GTTTCTCTGG CTTTAGAAAC 2119 .......... .......... .......... .......... .......... .......... 153 TGCATGTGCA GAAGATAATC AATGACTGGT TCTTTTTCTT TTGGGGAATT TAAGGTTTTG 2179 .......... .......... .......... .......... .......... .......... 153 TTATGTAAAT GGTTTTTTTT TCTGATTTTT CTGCTGTAAT TTTTTATTTT ACACATTGAC 2239 .......... .......... .......... .......... .......... .......... 153 TTGAATTTGT CTGAAAGGGT TTTTCAAGGA TCCTTTTGTT GATGGATGTA TTTTGATTTG 2299 .......... .......... .......... .......... .......... .......... 153 TGGATTGATT GAGGTTTTAA GGCTTTTTCT GTAAAAAGCT TCTTCTTTTA ATTCATGGTT 2359 .......... .......... .......... .......... .......... .......... 153 GATGCTTCTA GAATCTGGAT TTGCTTGATG AGTTCTAGGT TATAAGGTTT CCTCTTTTTA 2419 .......... .......... .......... .......... .......... .......... 153 TTTAATTTGC TGCTTGTTTT TTGGTATTTA AAATCTCTGT GTCCAGAATT TTACAAAAAT 2479 .......... .......... .......... .......... .......... .......... 153 ATTAATAAAT CTGGATTTGT CTTTGTGTTC TGTGTTGCTG CAAGTTAATG GTTTTTCCAT 2539 .......... .......... .......... .......... .......... .......... 153 TTCTGTGACA GTCTAGTCAA TTGGAATGTA AAATCTGTTT TTCTATTTTT GTGTATGTAT 2599 .......... .......... .......... .......... .......... .......... 153 TTGGATCTAT GTCAAGAGGT TCCAGTGATC TGTGTTAATA GAAGTGATTC TTTTAGCCAA 2659 .......... .......... .......... .......... .......... .......... 153 ATTGTCTTCT TGTTATGTGT AGTGGTGGAT CCAATGTAAT GGTACCAGGT TCATCTGAAC 2719 .......... .......... .......... .......... .......... .......... 153 CTAATAGTTT CGACTCGGAG CATAAATTTA TGTGTAGGAA TTCACTAAAA TTGCAATAAA 2779 .......... .......... .......... .......... .......... .......... 153 TAGTAGACAT GAATGATGTT GATGACGACA TGCTTGAGAT GGTTGTATTA ATAGCTTGCA 2839 .......... .......... .......... .......... .......... .......... 153 TTAGTTTCGA TCTTTTCTAT GGTATCAATT CCCATAGTTA TACGTTGTTG TCGAAATGTT 2899 .......... .......... .......... .......... .......... .......... 153 TATTTAGTTA TTCTTTGACA TGAAATTTTT TTACTTTATG AGTAACTGAT AATATACTTG 2959 .......... .......... .......... .......... .......... .......... 153 CAATTACAGG TGTGGACACT GTAAGAGTCT TGCTCCTGAG GTACACTTTC TTCTATACAG 3019 | |||||||||| |||||||||| |||||||||| .........G TGTGGACACT GTAAGAGTCT TGCTCCTGAG .......... .......... 184 TGCTTAATGA AGGAAGGAAT ATCATTTTTC TCTGTCATTA TGTTTTTTCT TGGCATTTTC 3079 .......... .......... .......... .......... .......... .......... 184 AATCTATGCA ACTGATTTAA TGTTAAATTA TGTTTCTTTC CAGTATGAAA AAGCTGCCTC 3139 ||||||| |||||||||| .......... .......... .......... .......... ...TATGAAA AAGCTGCCTC 201 AGAGCTGAGT AGTCATGACC CTCCAATTGT TCTAGCTAAG TATGATGCAA ATGATGAAGC 3199 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAGCTGAGT AGTCATGACC CTCCAATTGT TCTAGCTAAG TATGATGCAA ATGATGAAGC 261 CAATAGAGAA CTTTCAAAAC AGTACGAGAT CCAGGGTTTC CCAACTATTA AGATATTGAG 3259 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAATAGAGAA CTTTCAAAAC AGTACGAGAT CCAGGGTTTC CCAACTATTA AGATATTGAG 321 AGATGGAGGA AAGAAAGTTC AAGACTATAA CGGTCCTCGT GAAGCAGCTG GTATTGTATC 3319 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGATGGAGGA AAGAAAGTTC AAGACTATAA CGGTCCTCGT GAAGCAGCTG GTATTGTATC 381 CTACTTGAAG AAACAAGTGG GTCCTGCATC TGCTGAAATC AAGTCGAAGG AAGATGCCAC 3379 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTACTTGAAG AAACAAGTGG GTCCTGCATC TGCTGAAATC AAGTCGAAGG AAGATGCCAC 441 AAACCTTATT GATGAGAAAA GTATCTTTGT TGTAAGTGGT GATACTTTTG ATGTTTTACT 3439 |||||||||| |||||||||| |||||| ||| | AAACCTTATT GATGAGAAAA GTATCTNTGT T......... .......... .......... 472 TATCATTACT GAAGTTTATT TTCAGCATGC CATAGCTTCT TGCTGTCTAA AATCTTTCTG 3499 .......... .......... .......... .......... .......... .......... 472 TTTCTTTAGG TTGGTATATT TCCAGACCCC TCCGGAGAGA AATTCGAGAA CTATTTAACG 3559 | |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .........G TTGGTATATT TCCAGACCCC TCCGGAGAGA AATTCGAGAA CTATTTAACG 523 CTAGCTG 3566 ||||||| CTAGCTG 530 hqPGS_C06HBa0054K13.1-11+_SGN-E324253+ (1641 1792,2969 2999,3123 3410,3509 3566) ******************************************************************************** EST sequence 61 +strand 342 n (File: SGN-E312303+) 1 GCATTTTGGT AATTGTTTCA GCTCTTGGGG TTCTTGCGGT TTGTGGTGTT TTTGCTGAGG 61 AGAACGAATA TGTGTTGACT TTGGACCATT CTAACCTCAC TGAGACTGTT GCTAAGCACA 121 ACTTCATTGT TGTTGAATTC TATGCACCTT GGTGTGGACA CTGTAAGAGT CTTGCTCCTG 181 AGTATGAAAA AGCTGCCTCA GAGCTGAGTA GTCATGACCC TCCAATTGTT CTAGCTAAGT 241 ATGATGCAAA TGATGAAGCC AATAGAGAAC TTTCAAAACA GTACGAGATC CAGGGTTTCC 301 CAACTATTAA GATATTGAGA GATGGAGGAA AGAAAGTTCA AG Predicted gene structure (within gDNA segment 1042 to 3892): Exon 1 1642 1792 ( 151 n); cDNA 1 151 ( 151 n); score: 0.980 Intron 1 1793 2968 (1176 n); Pd: 1.000 (s: 1.00), Pa: 0.997 (s: 0) Exon 2 2969 2999 ( 31 n); cDNA 152 182 ( 31 n); score: 1.000 Intron 2 3000 3122 ( 123 n); Pd: 0.917 (s: 0), Pa: 0.997 (s: 1.00) Exon 3 3123 3282 ( 160 n); cDNA 183 342 ( 160 n); score: 1.000 MATCH C06HBa0054K13.1-11+ SGN-E312303+ 0.990 342 1.000 C PGS_C06HBa0054K13.1-11+_SGN-E312303+ (1642 1792,2969 2999,3123 3282) Alignment (genomic DNA sequence = upper lines): GCATTTTGGT AATTGTTTCA GCTCTTGTTG TTCTTGCAGT TTGTGGTGTT TTTGCTGAGG 1701 |||||||||| |||||||||| ||||||| | ||||||| || |||||||||| |||||||||| GCATTTTGGT AATTGTTTCA GCTCTTGGGG TTCTTGCGGT TTGTGGTGTT TTTGCTGAGG 60 AGAACGAATA TGTGTTGACT TTGGACCATT CTAACCTCAC TGAGACTGTT GCTAAGCACA 1761 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAACGAATA TGTGTTGACT TTGGACCATT CTAACCTCAC TGAGACTGTT GCTAAGCACA 120 ACTTCATTGT TGTTGAATTC TATGCACCTT GGTAAGTCAT CTGCTGTTTT TTTTTCTATT 1821 |||||||||| |||||||||| |||||||||| | ACTTCATTGT TGTTGAATTC TATGCACCTT G......... .......... .......... 151 TATTTTCTTG AAAAAAGTTC ATTTTTTTTG CTTGTTGAAT CTGTATGTGC AGAATGTAAT 1881 .......... .......... .......... .......... .......... .......... 151 GAATGATTGG ATGTAAGGGG TTTTGTTTTT GATCTGTTTT TTTTTTGTTA TTTTAGTGAA 1941 .......... .......... .......... .......... .......... .......... 151 TTTTTGCTGT AATTTTTTTG TTTTCATAAG CTGTGTGAGG AATGCATCAA GATCAGTTCT 2001 .......... .......... .......... .......... .......... .......... 151 TTATGTTAAT TTGTCTTAAA GGGTTCATCA AGGACCCCTT TGGCTCTACT TTGCTGTTCC 2061 .......... .......... .......... .......... .......... .......... 151 TGTTTTTTTT TTTTTTTTGG AGTTTTATCT TTTTGCTGGT TTCTCTGGCT TTAGAAACTG 2121 .......... .......... .......... .......... .......... .......... 151 CATGTGCAGA AGATAATCAA TGACTGGTTC TTTTTCTTTT GGGGAATTTA AGGTTTTGTT 2181 .......... .......... .......... .......... .......... .......... 151 ATGTAAATGG TTTTTTTTTC TGATTTTTCT GCTGTAATTT TTTATTTTAC ACATTGACTT 2241 .......... .......... .......... .......... .......... .......... 151 GAATTTGTCT GAAAGGGTTT TTCAAGGATC CTTTTGTTGA TGGATGTATT TTGATTTGTG 2301 .......... .......... .......... .......... .......... .......... 151 GATTGATTGA GGTTTTAAGG CTTTTTCTGT AAAAAGCTTC TTCTTTTAAT TCATGGTTGA 2361 .......... .......... .......... .......... .......... .......... 151 TGCTTCTAGA ATCTGGATTT GCTTGATGAG TTCTAGGTTA TAAGGTTTCC TCTTTTTATT 2421 .......... .......... .......... .......... .......... .......... 151 TAATTTGCTG CTTGTTTTTT GGTATTTAAA ATCTCTGTGT CCAGAATTTT ACAAAAATAT 2481 .......... .......... .......... .......... .......... .......... 151 TAATAAATCT GGATTTGTCT TTGTGTTCTG TGTTGCTGCA AGTTAATGGT TTTTCCATTT 2541 .......... .......... .......... .......... .......... .......... 151 CTGTGACAGT CTAGTCAATT GGAATGTAAA ATCTGTTTTT CTATTTTTGT GTATGTATTT 2601 .......... .......... .......... .......... .......... .......... 151 GGATCTATGT CAAGAGGTTC CAGTGATCTG TGTTAATAGA AGTGATTCTT TTAGCCAAAT 2661 .......... .......... .......... .......... .......... .......... 151 TGTCTTCTTG TTATGTGTAG TGGTGGATCC AATGTAATGG TACCAGGTTC ATCTGAACCT 2721 .......... .......... .......... .......... .......... .......... 151 AATAGTTTCG ACTCGGAGCA TAAATTTATG TGTAGGAATT CACTAAAATT GCAATAAATA 2781 .......... .......... .......... .......... .......... .......... 151 GTAGACATGA ATGATGTTGA TGACGACATG CTTGAGATGG TTGTATTAAT AGCTTGCATT 2841 .......... .......... .......... .......... .......... .......... 151 AGTTTCGATC TTTTCTATGG TATCAATTCC CATAGTTATA CGTTGTTGTC GAAATGTTTA 2901 .......... .......... .......... .......... .......... .......... 151 TTTAGTTATT CTTTGACATG AAATTTTTTT ACTTTATGAG TAACTGATAA TATACTTGCA 2961 .......... .......... .......... .......... .......... .......... 151 ATTACAGGTG TGGACACTGT AAGAGTCTTG CTCCTGAGGT ACACTTTCTT CTATACAGTG 3021 ||| |||||||||| |||||||||| |||||||| .......GTG TGGACACTGT AAGAGTCTTG CTCCTGAG.. .......... .......... 182 CTTAATGAAG GAAGGAATAT CATTTTTCTC TGTCATTATG TTTTTTCTTG GCATTTTCAA 3081 .......... .......... .......... .......... .......... .......... 182 TCTATGCAAC TGATTTAATG TTAAATTATG TTTCTTTCCA GTATGAAAAA GCTGCCTCAG 3141 ||||||||| |||||||||| .......... .......... .......... .......... .TATGAAAAA GCTGCCTCAG 201 AGCTGAGTAG TCATGACCCT CCAATTGTTC TAGCTAAGTA TGATGCAAAT GATGAAGCCA 3201 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCTGAGTAG TCATGACCCT CCAATTGTTC TAGCTAAGTA TGATGCAAAT GATGAAGCCA 261 ATAGAGAACT TTCAAAACAG TACGAGATCC AGGGTTTCCC AACTATTAAG ATATTGAGAG 3261 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATAGAGAACT TTCAAAACAG TACGAGATCC AGGGTTTCCC AACTATTAAG ATATTGAGAG 321 ATGGAGGAAA GAAAGTTCAA G 3282 |||||||||| |||||||||| | ATGGAGGAAA GAAAGTTCAA G 342 hqPGS_C06HBa0054K13.1-11+_SGN-E312303+ (1642 1792,2969 2999,3123 3282) ******************************************************************************** EST sequence 68 +strand 568 n (File: SGN-E307779+) 1 TTTTGGTAAT TGTTTCAGCT CTTGTTGTTC TTGCAGTTTG TGGTGTTTTT GCTGAGGAGA 61 ACGAATATGT GTTGACTTTG GACCATTCTA ACCTCACTGA GACTGTTGCT AAGCACAACT 121 TCATTGTTGT TGAATTCTAT GCACCTTGGT GTGGACACTG TAAGAGTCTT GCTCCTGAGT 181 ATGAAAAAGC TGCCTCAGAG CTGAGTAGTC ATGACCCTCC AATTGTTCTA GCTAAGTATG 241 ATGCAAATGA TGAAGCCAAT AGAGAACTTT CAAAACAGTA CGAGATCCAG GGTTTCCCAA 301 CTATTAAGAT ATTGAAAGAT GGAGGAAAGA AAGTTCAAGA CTATAACGGT CCTCGTGAAG 361 CAGCTGGTAT TGTATCCTAC TTGAAGAAAC AAGTGGGTCC TGCATCTGCT GAAATCAAGT 421 CGAAGGAAGA TGCCACAAAC CTTATTGATG AGAAAAGTAT CTTTGTTGTT GGTATATTTC 481 CAGACCCCTC CGGAGAGAAA TTCGAGAACT ATTTAACGCT AGCTGAAAAA CTGCGAGGCG 541 AGTTCGATTT TGCTCACACT GTTGATGC Predicted gene structure (within gDNA segment 1045 to 4219): Exon 1 1645 1792 ( 148 n); cDNA 1 148 ( 148 n); score: 1.000 Intron 1 1793 2968 (1176 n); Pd: 1.000 (s: 1.00), Pa: 0.997 (s: 0) Exon 2 2969 2999 ( 31 n); cDNA 149 179 ( 31 n); score: 1.000 Intron 2 3000 3122 ( 123 n); Pd: 0.917 (s: 0), Pa: 0.997 (s: 1.00) Exon 3 3123 3410 ( 288 n); cDNA 180 467 ( 288 n); score: 0.997 Intron 3 3411 3508 ( 98 n); Pd: 0.907 (s: 1.00), Pa: 0.997 (s: 1.00) Exon 4 3509 3609 ( 101 n); cDNA 468 568 ( 101 n); score: 1.000 MATCH C06HBa0054K13.1-11+ SGN-E307779+ 0.998 568 1.000 C PGS_C06HBa0054K13.1-11+_SGN-E307779+ (1645 1792,2969 2999,3123 3410,3509 3609) Alignment (genomic DNA sequence = upper lines): TTTTGGTAAT TGTTTCAGCT CTTGTTGTTC TTGCAGTTTG TGGTGTTTTT GCTGAGGAGA 1704 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTTGGTAAT TGTTTCAGCT CTTGTTGTTC TTGCAGTTTG TGGTGTTTTT GCTGAGGAGA 60 ACGAATATGT GTTGACTTTG GACCATTCTA ACCTCACTGA GACTGTTGCT AAGCACAACT 1764 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACGAATATGT GTTGACTTTG GACCATTCTA ACCTCACTGA GACTGTTGCT AAGCACAACT 120 TCATTGTTGT TGAATTCTAT GCACCTTGGT AAGTCATCTG CTGTTTTTTT TTCTATTTAT 1824 |||||||||| |||||||||| |||||||| TCATTGTTGT TGAATTCTAT GCACCTTG.. .......... .......... .......... 148 TTTCTTGAAA AAAGTTCATT TTTTTTGCTT GTTGAATCTG TATGTGCAGA ATGTAATGAA 1884 .......... .......... .......... .......... .......... .......... 148 TGATTGGATG TAAGGGGTTT TGTTTTTGAT CTGTTTTTTT TTTGTTATTT TAGTGAATTT 1944 .......... .......... .......... .......... .......... .......... 148 TTGCTGTAAT TTTTTTGTTT TCATAAGCTG TGTGAGGAAT GCATCAAGAT CAGTTCTTTA 2004 .......... .......... .......... .......... .......... .......... 148 TGTTAATTTG TCTTAAAGGG TTCATCAAGG ACCCCTTTGG CTCTACTTTG CTGTTCCTGT 2064 .......... .......... .......... .......... .......... .......... 148 TTTTTTTTTT TTTTTGGAGT TTTATCTTTT TGCTGGTTTC TCTGGCTTTA GAAACTGCAT 2124 .......... .......... .......... .......... .......... .......... 148 GTGCAGAAGA TAATCAATGA CTGGTTCTTT TTCTTTTGGG GAATTTAAGG TTTTGTTATG 2184 .......... .......... .......... .......... .......... .......... 148 TAAATGGTTT TTTTTTCTGA TTTTTCTGCT GTAATTTTTT ATTTTACACA TTGACTTGAA 2244 .......... .......... .......... .......... .......... .......... 148 TTTGTCTGAA AGGGTTTTTC AAGGATCCTT TTGTTGATGG ATGTATTTTG ATTTGTGGAT 2304 .......... .......... .......... .......... .......... .......... 148 TGATTGAGGT TTTAAGGCTT TTTCTGTAAA AAGCTTCTTC TTTTAATTCA TGGTTGATGC 2364 .......... .......... .......... .......... .......... .......... 148 TTCTAGAATC TGGATTTGCT TGATGAGTTC TAGGTTATAA GGTTTCCTCT TTTTATTTAA 2424 .......... .......... .......... .......... .......... .......... 148 TTTGCTGCTT GTTTTTTGGT ATTTAAAATC TCTGTGTCCA GAATTTTACA AAAATATTAA 2484 .......... .......... .......... .......... .......... .......... 148 TAAATCTGGA TTTGTCTTTG TGTTCTGTGT TGCTGCAAGT TAATGGTTTT TCCATTTCTG 2544 .......... .......... .......... .......... .......... .......... 148 TGACAGTCTA GTCAATTGGA ATGTAAAATC TGTTTTTCTA TTTTTGTGTA TGTATTTGGA 2604 .......... .......... .......... .......... .......... .......... 148 TCTATGTCAA GAGGTTCCAG TGATCTGTGT TAATAGAAGT GATTCTTTTA GCCAAATTGT 2664 .......... .......... .......... .......... .......... .......... 148 CTTCTTGTTA TGTGTAGTGG TGGATCCAAT GTAATGGTAC CAGGTTCATC TGAACCTAAT 2724 .......... .......... .......... .......... .......... .......... 148 AGTTTCGACT CGGAGCATAA ATTTATGTGT AGGAATTCAC TAAAATTGCA ATAAATAGTA 2784 .......... .......... .......... .......... .......... .......... 148 GACATGAATG ATGTTGATGA CGACATGCTT GAGATGGTTG TATTAATAGC TTGCATTAGT 2844 .......... .......... .......... .......... .......... .......... 148 TTCGATCTTT TCTATGGTAT CAATTCCCAT AGTTATACGT TGTTGTCGAA ATGTTTATTT 2904 .......... .......... .......... .......... .......... .......... 148 AGTTATTCTT TGACATGAAA TTTTTTTACT TTATGAGTAA CTGATAATAT ACTTGCAATT 2964 .......... .......... .......... .......... .......... .......... 148 ACAGGTGTGG ACACTGTAAG AGTCTTGCTC CTGAGGTACA CTTTCTTCTA TACAGTGCTT 3024 |||||| |||||||||| |||||||||| ||||| ....GTGTGG ACACTGTAAG AGTCTTGCTC CTGAG..... .......... .......... 179 AATGAAGGAA GGAATATCAT TTTTCTCTGT CATTATGTTT TTTCTTGGCA TTTTCAATCT 3084 .......... .......... .......... .......... .......... .......... 179 ATGCAACTGA TTTAATGTTA AATTATGTTT CTTTCCAGTA TGAAAAAGCT GCCTCAGAGC 3144 || |||||||||| |||||||||| .......... .......... .......... ........TA TGAAAAAGCT GCCTCAGAGC 201 TGAGTAGTCA TGACCCTCCA ATTGTTCTAG CTAAGTATGA TGCAAATGAT GAAGCCAATA 3204 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAGTAGTCA TGACCCTCCA ATTGTTCTAG CTAAGTATGA TGCAAATGAT GAAGCCAATA 261 GAGAACTTTC AAAACAGTAC GAGATCCAGG GTTTCCCAAC TATTAAGATA TTGAGAGATG 3264 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||| ||||| GAGAACTTTC AAAACAGTAC GAGATCCAGG GTTTCCCAAC TATTAAGATA TTGAAAGATG 321 GAGGAAAGAA AGTTCAAGAC TATAACGGTC CTCGTGAAGC AGCTGGTATT GTATCCTACT 3324 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGGAAAGAA AGTTCAAGAC TATAACGGTC CTCGTGAAGC AGCTGGTATT GTATCCTACT 381 TGAAGAAACA AGTGGGTCCT GCATCTGCTG AAATCAAGTC GAAGGAAGAT GCCACAAACC 3384 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAAGAAACA AGTGGGTCCT GCATCTGCTG AAATCAAGTC GAAGGAAGAT GCCACAAACC 441 TTATTGATGA GAAAAGTATC TTTGTTGTAA GTGGTGATAC TTTTGATGTT TTACTTATCA 3444 |||||||||| |||||||||| |||||| TTATTGATGA GAAAAGTATC TTTGTT.... .......... .......... .......... 467 TTACTGAAGT TTATTTTCAG CATGCCATAG CTTCTTGCTG TCTAAAATCT TTCTGTTTCT 3504 .......... .......... .......... .......... .......... .......... 467 TTAGGTTGGT ATATTTCCAG ACCCCTCCGG AGAGAAATTC GAGAACTATT TAACGCTAGC 3564 |||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ....GTTGGT ATATTTCCAG ACCCCTCCGG AGAGAAATTC GAGAACTATT TAACGCTAGC 523 TGAAAAACTG CGAGGCGAGT TCGATTTTGC TCACACTGTT GATGC 3609 |||||||||| |||||||||| |||||||||| |||||||||| ||||| TGAAAAACTG CGAGGCGAGT TCGATTTTGC TCACACTGTT GATGC 568 hqPGS_C06HBa0054K13.1-11+_SGN-E307779+ (1645 1792,2969 2999,3123 3410,3509 3609) ******************************************************************************** EST sequence 90 +strand 605 n (File: SGN-E259349+) 1 TGGTAATAGG ATCAGCTCTT GTTGTTCTTG CAGTTCGTGG TGTGTTTGCT GAGGAGAACG 61 AATATGTGTT GACTTTGGAC CATTCTAACC TCACTGAGAC TGTTGCTAAG CACAACTTCA 121 TTGTTGTTGA ATTCTATGCA CCTTGGTGTG GACACTGTAA GAGTCTTGCT CCTGAGTATG 181 AAAAAGCTGC CTCAGAGCTG AGTAGTCATG ACCCTCCAAT TGTTCTAGCT AAGTATGATG 241 CAAATGATGA AGCCAATAGA GAACTTTCAA AACAGTACGA GATCCAGGGT TTCCCAACTA 301 TTAAGATATT GAGAGATGGA GGAAAGAAAG TTCAAGACTA TAACGGTCCT CGTGAAGCAG 361 CTGGTATTGT ATCCTACTTG AAGAAACAAG TGGGTCCTGC ATCTGCTGAA ATCAAGTCGA 421 AGGAAGATGC CACAAACCTT ATTGATGAGA AAAGTATCTT TGTTGTTGGT ATATTTCCAG 481 ACCCCTCCGG AGAGAAATTC GAGAACTATT TAACGCTAGC TGAAAAACTG CGAGGCGAGT 541 TCGATTTTGC TCACACTGTT GATGCTAAAC ACCTCCCTCG GGGTGGACCA GTCAACAAGC 601 CCACT Predicted gene structure (within gDNA segment 949 to 4259): Exon 1 1648 1792 ( 145 n); cDNA 1 145 ( 145 n); score: 0.966 Intron 1 1793 2968 (1176 n); Pd: 1.000 (s: 1.00), Pa: 0.997 (s: 0) Exon 2 2969 2999 ( 31 n); cDNA 146 176 ( 31 n); score: 1.000 Intron 2 3000 3122 ( 123 n); Pd: 0.917 (s: 0), Pa: 0.997 (s: 1.00) Exon 3 3123 3410 ( 288 n); cDNA 177 464 ( 288 n); score: 1.000 Intron 3 3411 3508 ( 98 n); Pd: 0.907 (s: 1.00), Pa: 0.997 (s: 1.00) Exon 4 3509 3649 ( 141 n); cDNA 465 605 ( 141 n); score: 1.000 MATCH C06HBa0054K13.1-11+ SGN-E259349+ 0.991 605 1.000 C PGS_C06HBa0054K13.1-11+_SGN-E259349+ (1648 1792,2969 2999,3123 3410,3509 3649) Alignment (genomic DNA sequence = upper lines): TGGTAATTGT TTCAGCTCTT GTTGTTCTTG CAGTTTGTGG TGTTTTTGCT GAGGAGAACG 1707 ||||||| | ||||||||| |||||||||| ||||| |||| ||| |||||| |||||||||| TGGTAATAGG ATCAGCTCTT GTTGTTCTTG CAGTTCGTGG TGTGTTTGCT GAGGAGAACG 60 AATATGTGTT GACTTTGGAC CATTCTAACC TCACTGAGAC TGTTGCTAAG CACAACTTCA 1767 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATATGTGTT GACTTTGGAC CATTCTAACC TCACTGAGAC TGTTGCTAAG CACAACTTCA 120 TTGTTGTTGA ATTCTATGCA CCTTGGTAAG TCATCTGCTG TTTTTTTTTC TATTTATTTT 1827 |||||||||| |||||||||| ||||| TTGTTGTTGA ATTCTATGCA CCTTG..... .......... .......... .......... 145 CTTGAAAAAA GTTCATTTTT TTTGCTTGTT GAATCTGTAT GTGCAGAATG TAATGAATGA 1887 .......... .......... .......... .......... .......... .......... 145 TTGGATGTAA GGGGTTTTGT TTTTGATCTG TTTTTTTTTT GTTATTTTAG TGAATTTTTG 1947 .......... .......... .......... .......... .......... .......... 145 CTGTAATTTT TTTGTTTTCA TAAGCTGTGT GAGGAATGCA TCAAGATCAG TTCTTTATGT 2007 .......... .......... .......... .......... .......... .......... 145 TAATTTGTCT TAAAGGGTTC ATCAAGGACC CCTTTGGCTC TACTTTGCTG TTCCTGTTTT 2067 .......... .......... .......... .......... .......... .......... 145 TTTTTTTTTT TTGGAGTTTT ATCTTTTTGC TGGTTTCTCT GGCTTTAGAA ACTGCATGTG 2127 .......... .......... .......... .......... .......... .......... 145 CAGAAGATAA TCAATGACTG GTTCTTTTTC TTTTGGGGAA TTTAAGGTTT TGTTATGTAA 2187 .......... .......... .......... .......... .......... .......... 145 ATGGTTTTTT TTTCTGATTT TTCTGCTGTA ATTTTTTATT TTACACATTG ACTTGAATTT 2247 .......... .......... .......... .......... .......... .......... 145 GTCTGAAAGG GTTTTTCAAG GATCCTTTTG TTGATGGATG TATTTTGATT TGTGGATTGA 2307 .......... .......... .......... .......... .......... .......... 145 TTGAGGTTTT AAGGCTTTTT CTGTAAAAAG CTTCTTCTTT TAATTCATGG TTGATGCTTC 2367 .......... .......... .......... .......... .......... .......... 145 TAGAATCTGG ATTTGCTTGA TGAGTTCTAG GTTATAAGGT TTCCTCTTTT TATTTAATTT 2427 .......... .......... .......... .......... .......... .......... 145 GCTGCTTGTT TTTTGGTATT TAAAATCTCT GTGTCCAGAA TTTTACAAAA ATATTAATAA 2487 .......... .......... .......... .......... .......... .......... 145 ATCTGGATTT GTCTTTGTGT TCTGTGTTGC TGCAAGTTAA TGGTTTTTCC ATTTCTGTGA 2547 .......... .......... .......... .......... .......... .......... 145 CAGTCTAGTC AATTGGAATG TAAAATCTGT TTTTCTATTT TTGTGTATGT ATTTGGATCT 2607 .......... .......... .......... .......... .......... .......... 145 ATGTCAAGAG GTTCCAGTGA TCTGTGTTAA TAGAAGTGAT TCTTTTAGCC AAATTGTCTT 2667 .......... .......... .......... .......... .......... .......... 145 CTTGTTATGT GTAGTGGTGG ATCCAATGTA ATGGTACCAG GTTCATCTGA ACCTAATAGT 2727 .......... .......... .......... .......... .......... .......... 145 TTCGACTCGG AGCATAAATT TATGTGTAGG AATTCACTAA AATTGCAATA AATAGTAGAC 2787 .......... .......... .......... .......... .......... .......... 145 ATGAATGATG TTGATGACGA CATGCTTGAG ATGGTTGTAT TAATAGCTTG CATTAGTTTC 2847 .......... .......... .......... .......... .......... .......... 145 GATCTTTTCT ATGGTATCAA TTCCCATAGT TATACGTTGT TGTCGAAATG TTTATTTAGT 2907 .......... .......... .......... .......... .......... .......... 145 TATTCTTTGA CATGAAATTT TTTTACTTTA TGAGTAACTG ATAATATACT TGCAATTACA 2967 .......... .......... .......... .......... .......... .......... 145 GGTGTGGACA CTGTAAGAGT CTTGCTCCTG AGGTACACTT TCTTCTATAC AGTGCTTAAT 3027 ||||||||| |||||||||| |||||||||| || .GTGTGGACA CTGTAAGAGT CTTGCTCCTG AG........ .......... .......... 176 GAAGGAAGGA ATATCATTTT TCTCTGTCAT TATGTTTTTT CTTGGCATTT TCAATCTATG 3087 .......... .......... .......... .......... .......... .......... 176 CAACTGATTT AATGTTAAAT TATGTTTCTT TCCAGTATGA AAAAGCTGCC TCAGAGCTGA 3147 ||||| |||||||||| |||||||||| .......... .......... .......... .....TATGA AAAAGCTGCC TCAGAGCTGA 201 GTAGTCATGA CCCTCCAATT GTTCTAGCTA AGTATGATGC AAATGATGAA GCCAATAGAG 3207 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTAGTCATGA CCCTCCAATT GTTCTAGCTA AGTATGATGC AAATGATGAA GCCAATAGAG 261 AACTTTCAAA ACAGTACGAG ATCCAGGGTT TCCCAACTAT TAAGATATTG AGAGATGGAG 3267 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACTTTCAAA ACAGTACGAG ATCCAGGGTT TCCCAACTAT TAAGATATTG AGAGATGGAG 321 GAAAGAAAGT TCAAGACTAT AACGGTCCTC GTGAAGCAGC TGGTATTGTA TCCTACTTGA 3327 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAAGAAAGT TCAAGACTAT AACGGTCCTC GTGAAGCAGC TGGTATTGTA TCCTACTTGA 381 AGAAACAAGT GGGTCCTGCA TCTGCTGAAA TCAAGTCGAA GGAAGATGCC ACAAACCTTA 3387 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAAACAAGT GGGTCCTGCA TCTGCTGAAA TCAAGTCGAA GGAAGATGCC ACAAACCTTA 441 TTGATGAGAA AAGTATCTTT GTTGTAAGTG GTGATACTTT TGATGTTTTA CTTATCATTA 3447 |||||||||| |||||||||| ||| TTGATGAGAA AAGTATCTTT GTT....... .......... .......... .......... 464 CTGAAGTTTA TTTTCAGCAT GCCATAGCTT CTTGCTGTCT AAAATCTTTC TGTTTCTTTA 3507 .......... .......... .......... .......... .......... .......... 464 GGTTGGTATA TTTCCAGACC CCTCCGGAGA GAAATTCGAG AACTATTTAA CGCTAGCTGA 3567 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .GTTGGTATA TTTCCAGACC CCTCCGGAGA GAAATTCGAG AACTATTTAA CGCTAGCTGA 523 AAAACTGCGA GGCGAGTTCG ATTTTGCTCA CACTGTTGAT GCTAAACACC TCCCTCGGGG 3627 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAACTGCGA GGCGAGTTCG ATTTTGCTCA CACTGTTGAT GCTAAACACC TCCCTCGGGG 583 TGGACCAGTC AACAAGCCCA CT 3649 |||||||||| |||||||||| || TGGACCAGTC AACAAGCCCA CT 605 hqPGS_C06HBa0054K13.1-11+_SGN-E259349+ (1648 1792,2969 2999,3123 3410,3509 3649) ******************************************************************************** EST sequence 50 +strand 382 n (File: SGN-E264660+) 1 TGGTAATTGT TTCAGCTCTT GTTGTTCTTG CAGTTTGTGG TGTTTTTGCT GAGGAGAACG 61 AATATGTGTT GACTTTGGAC CATTCTAACC TCACTGAGAC TGTTGCTAAG CACAACTTCA 121 TTGTTGTTGA ATTCTATGCA CCTTGGTGTG GACACTGTAA GAGTCTTGCT CCTGAGTATG 181 AAAAAGCTGC CTCAGAGCTG AGTAGTCATG ACCCTCCAAT TGTTCTAGCT AAGTATGATG 241 CAAATGATGA AGCCAATAGA GAACTTTCAA AACAGTACGA GATCCAGGGT TTCCCAACTA 301 TTAAGATATT GAGAGATGGA GGAAAGAAAG TTCAAGACTA TAACGGTCCT CGTGAAGCAG 361 CTGGTATTGT ATCCTACTTG AA Predicted gene structure (within gDNA segment 1048 to 3938): Exon 1 1648 1792 ( 145 n); cDNA 1 145 ( 145 n); score: 1.000 Intron 1 1793 2968 (1176 n); Pd: 1.000 (s: 1.00), Pa: 0.997 (s: 0) Exon 2 2969 2999 ( 31 n); cDNA 146 176 ( 31 n); score: 1.000 Intron 2 3000 3122 ( 123 n); Pd: 0.917 (s: 0), Pa: 0.997 (s: 1.00) Exon 3 3123 3328 ( 206 n); cDNA 177 382 ( 206 n); score: 1.000 MATCH C06HBa0054K13.1-11+ SGN-E264660+ 1.000 382 1.000 C PGS_C06HBa0054K13.1-11+_SGN-E264660+ (1648 1792,2969 2999,3123 3328) Alignment (genomic DNA sequence = upper lines): TGGTAATTGT TTCAGCTCTT GTTGTTCTTG CAGTTTGTGG TGTTTTTGCT GAGGAGAACG 1707 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGTAATTGT TTCAGCTCTT GTTGTTCTTG CAGTTTGTGG TGTTTTTGCT GAGGAGAACG 60 AATATGTGTT GACTTTGGAC CATTCTAACC TCACTGAGAC TGTTGCTAAG CACAACTTCA 1767 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATATGTGTT GACTTTGGAC CATTCTAACC TCACTGAGAC TGTTGCTAAG CACAACTTCA 120 TTGTTGTTGA ATTCTATGCA CCTTGGTAAG TCATCTGCTG TTTTTTTTTC TATTTATTTT 1827 |||||||||| |||||||||| ||||| TTGTTGTTGA ATTCTATGCA CCTTG..... .......... .......... .......... 145 CTTGAAAAAA GTTCATTTTT TTTGCTTGTT GAATCTGTAT GTGCAGAATG TAATGAATGA 1887 .......... .......... .......... .......... .......... .......... 145 TTGGATGTAA GGGGTTTTGT TTTTGATCTG TTTTTTTTTT GTTATTTTAG TGAATTTTTG 1947 .......... .......... .......... .......... .......... .......... 145 CTGTAATTTT TTTGTTTTCA TAAGCTGTGT GAGGAATGCA TCAAGATCAG TTCTTTATGT 2007 .......... .......... .......... .......... .......... .......... 145 TAATTTGTCT TAAAGGGTTC ATCAAGGACC CCTTTGGCTC TACTTTGCTG TTCCTGTTTT 2067 .......... .......... .......... .......... .......... .......... 145 TTTTTTTTTT TTGGAGTTTT ATCTTTTTGC TGGTTTCTCT GGCTTTAGAA ACTGCATGTG 2127 .......... .......... .......... .......... .......... .......... 145 CAGAAGATAA TCAATGACTG GTTCTTTTTC TTTTGGGGAA TTTAAGGTTT TGTTATGTAA 2187 .......... .......... .......... .......... .......... .......... 145 ATGGTTTTTT TTTCTGATTT TTCTGCTGTA ATTTTTTATT TTACACATTG ACTTGAATTT 2247 .......... .......... .......... .......... .......... .......... 145 GTCTGAAAGG GTTTTTCAAG GATCCTTTTG TTGATGGATG TATTTTGATT TGTGGATTGA 2307 .......... .......... .......... .......... .......... .......... 145 TTGAGGTTTT AAGGCTTTTT CTGTAAAAAG CTTCTTCTTT TAATTCATGG TTGATGCTTC 2367 .......... .......... .......... .......... .......... .......... 145 TAGAATCTGG ATTTGCTTGA TGAGTTCTAG GTTATAAGGT TTCCTCTTTT TATTTAATTT 2427 .......... .......... .......... .......... .......... .......... 145 GCTGCTTGTT TTTTGGTATT TAAAATCTCT GTGTCCAGAA TTTTACAAAA ATATTAATAA 2487 .......... .......... .......... .......... .......... .......... 145 ATCTGGATTT GTCTTTGTGT TCTGTGTTGC TGCAAGTTAA TGGTTTTTCC ATTTCTGTGA 2547 .......... .......... .......... .......... .......... .......... 145 CAGTCTAGTC AATTGGAATG TAAAATCTGT TTTTCTATTT TTGTGTATGT ATTTGGATCT 2607 .......... .......... .......... .......... .......... .......... 145 ATGTCAAGAG GTTCCAGTGA TCTGTGTTAA TAGAAGTGAT TCTTTTAGCC AAATTGTCTT 2667 .......... .......... .......... .......... .......... .......... 145 CTTGTTATGT GTAGTGGTGG ATCCAATGTA ATGGTACCAG GTTCATCTGA ACCTAATAGT 2727 .......... .......... .......... .......... .......... .......... 145 TTCGACTCGG AGCATAAATT TATGTGTAGG AATTCACTAA AATTGCAATA AATAGTAGAC 2787 .......... .......... .......... .......... .......... .......... 145 ATGAATGATG TTGATGACGA CATGCTTGAG ATGGTTGTAT TAATAGCTTG CATTAGTTTC 2847 .......... .......... .......... .......... .......... .......... 145 GATCTTTTCT ATGGTATCAA TTCCCATAGT TATACGTTGT TGTCGAAATG TTTATTTAGT 2907 .......... .......... .......... .......... .......... .......... 145 TATTCTTTGA CATGAAATTT TTTTACTTTA TGAGTAACTG ATAATATACT TGCAATTACA 2967 .......... .......... .......... .......... .......... .......... 145 GGTGTGGACA CTGTAAGAGT CTTGCTCCTG AGGTACACTT TCTTCTATAC AGTGCTTAAT 3027 ||||||||| |||||||||| |||||||||| || .GTGTGGACA CTGTAAGAGT CTTGCTCCTG AG........ .......... .......... 176 GAAGGAAGGA ATATCATTTT TCTCTGTCAT TATGTTTTTT CTTGGCATTT TCAATCTATG 3087 .......... .......... .......... .......... .......... .......... 176 CAACTGATTT AATGTTAAAT TATGTTTCTT TCCAGTATGA AAAAGCTGCC TCAGAGCTGA 3147 ||||| |||||||||| |||||||||| .......... .......... .......... .....TATGA AAAAGCTGCC TCAGAGCTGA 201 GTAGTCATGA CCCTCCAATT GTTCTAGCTA AGTATGATGC AAATGATGAA GCCAATAGAG 3207 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTAGTCATGA CCCTCCAATT GTTCTAGCTA AGTATGATGC AAATGATGAA GCCAATAGAG 261 AACTTTCAAA ACAGTACGAG ATCCAGGGTT TCCCAACTAT TAAGATATTG AGAGATGGAG 3267 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACTTTCAAA ACAGTACGAG ATCCAGGGTT TCCCAACTAT TAAGATATTG AGAGATGGAG 321 GAAAGAAAGT TCAAGACTAT AACGGTCCTC GTGAAGCAGC TGGTATTGTA TCCTACTTGA 3327 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAAGAAAGT TCAAGACTAT AACGGTCCTC GTGAAGCAGC TGGTATTGTA TCCTACTTGA 381 A 3328 | A 382 hqPGS_C06HBa0054K13.1-11+_SGN-E264660+ (1648 1792,2969 2999,3123 3328) ******************************************************************************** EST sequence 109 +strand 549 n (File: SGN-E329306+) 1 GTTTCAGCTC TTGTTGTTCT TGCAGTTTGT GGTGTTTTTG CTGAGGAGAA CGAATATGTG 61 TTGACTTTGG ACCATTCTAA CCTCACTGAG ACTGTTGCTA AGCACAACTT CATTGTTGTT 121 GAATTCTATG CACCTTGGTG TGGACACTGT AAGAGTCTTG CTCCTGAGTA TGAAAAAGCT 181 GCCTCAGAGC TGAGTAGTCA TGACCCTCCA ATTGTTCTAG CTAAGTATGA TGCAAATGAT 241 GAAGCCAATA GAGAACTTTC AAAACAGTAC GAGATCCAGG GTTTCCCAAC TATTAAGATA 301 TTGAGAGATG GAGGAAAGAA AGTTCAAGAC TATAACGGTC CTCGTGAAGC AGCTGGTATT 361 GTATCCTACT TGAAGAAACA AGTGGGTCCT GCATCTGCTG AAATCAAGTC GAAGGAAGAT 421 GCCACAAACC TTATTGATGA GAAAAGTATC TTTGTTGTTG GTATATTTCC AGACCCCTCC 481 GGAGAGAAAT TCGAGAACTA TTTAACGCTA GCTGAAAAAC TGCGAGGCGA GTTCGATTTT 541 GCTCACACT Predicted gene structure (within gDNA segment 1056 to 4211): Exon 1 1656 1792 ( 137 n); cDNA 1 137 ( 137 n); score: 1.000 Intron 1 1793 2968 (1176 n); Pd: 1.000 (s: 1.00), Pa: 0.997 (s: 0) Exon 2 2969 2999 ( 31 n); cDNA 138 168 ( 31 n); score: 1.000 Intron 2 3000 3122 ( 123 n); Pd: 0.917 (s: 0), Pa: 0.997 (s: 1.00) Exon 3 3123 3410 ( 288 n); cDNA 169 456 ( 288 n); score: 1.000 Intron 3 3411 3508 ( 98 n); Pd: 0.907 (s: 1.00), Pa: 0.997 (s: 1.00) Exon 4 3509 3601 ( 93 n); cDNA 457 549 ( 93 n); score: 1.000 MATCH C06HBa0054K13.1-11+ SGN-E329306+ 1.000 549 1.000 C PGS_C06HBa0054K13.1-11+_SGN-E329306+ (1656 1792,2969 2999,3123 3410,3509 3601) Alignment (genomic DNA sequence = upper lines): GTTTCAGCTC TTGTTGTTCT TGCAGTTTGT GGTGTTTTTG CTGAGGAGAA CGAATATGTG 1715 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTTCAGCTC TTGTTGTTCT TGCAGTTTGT GGTGTTTTTG CTGAGGAGAA CGAATATGTG 60 TTGACTTTGG ACCATTCTAA CCTCACTGAG ACTGTTGCTA AGCACAACTT CATTGTTGTT 1775 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGACTTTGG ACCATTCTAA CCTCACTGAG ACTGTTGCTA AGCACAACTT CATTGTTGTT 120 GAATTCTATG CACCTTGGTA AGTCATCTGC TGTTTTTTTT TCTATTTATT TTCTTGAAAA 1835 |||||||||| ||||||| GAATTCTATG CACCTTG... .......... .......... .......... .......... 137 AAGTTCATTT TTTTTGCTTG TTGAATCTGT ATGTGCAGAA TGTAATGAAT GATTGGATGT 1895 .......... .......... .......... .......... .......... .......... 137 AAGGGGTTTT GTTTTTGATC TGTTTTTTTT TTGTTATTTT AGTGAATTTT TGCTGTAATT 1955 .......... .......... .......... .......... .......... .......... 137 TTTTTGTTTT CATAAGCTGT GTGAGGAATG CATCAAGATC AGTTCTTTAT GTTAATTTGT 2015 .......... .......... .......... .......... .......... .......... 137 CTTAAAGGGT TCATCAAGGA CCCCTTTGGC TCTACTTTGC TGTTCCTGTT TTTTTTTTTT 2075 .......... .......... .......... .......... .......... .......... 137 TTTTGGAGTT TTATCTTTTT GCTGGTTTCT CTGGCTTTAG AAACTGCATG TGCAGAAGAT 2135 .......... .......... .......... .......... .......... .......... 137 AATCAATGAC TGGTTCTTTT TCTTTTGGGG AATTTAAGGT TTTGTTATGT AAATGGTTTT 2195 .......... .......... .......... .......... .......... .......... 137 TTTTTCTGAT TTTTCTGCTG TAATTTTTTA TTTTACACAT TGACTTGAAT TTGTCTGAAA 2255 .......... .......... .......... .......... .......... .......... 137 GGGTTTTTCA AGGATCCTTT TGTTGATGGA TGTATTTTGA TTTGTGGATT GATTGAGGTT 2315 .......... .......... .......... .......... .......... .......... 137 TTAAGGCTTT TTCTGTAAAA AGCTTCTTCT TTTAATTCAT GGTTGATGCT TCTAGAATCT 2375 .......... .......... .......... .......... .......... .......... 137 GGATTTGCTT GATGAGTTCT AGGTTATAAG GTTTCCTCTT TTTATTTAAT TTGCTGCTTG 2435 .......... .......... .......... .......... .......... .......... 137 TTTTTTGGTA TTTAAAATCT CTGTGTCCAG AATTTTACAA AAATATTAAT AAATCTGGAT 2495 .......... .......... .......... .......... .......... .......... 137 TTGTCTTTGT GTTCTGTGTT GCTGCAAGTT AATGGTTTTT CCATTTCTGT GACAGTCTAG 2555 .......... .......... .......... .......... .......... .......... 137 TCAATTGGAA TGTAAAATCT GTTTTTCTAT TTTTGTGTAT GTATTTGGAT CTATGTCAAG 2615 .......... .......... .......... .......... .......... .......... 137 AGGTTCCAGT GATCTGTGTT AATAGAAGTG ATTCTTTTAG CCAAATTGTC TTCTTGTTAT 2675 .......... .......... .......... .......... .......... .......... 137 GTGTAGTGGT GGATCCAATG TAATGGTACC AGGTTCATCT GAACCTAATA GTTTCGACTC 2735 .......... .......... .......... .......... .......... .......... 137 GGAGCATAAA TTTATGTGTA GGAATTCACT AAAATTGCAA TAAATAGTAG ACATGAATGA 2795 .......... .......... .......... .......... .......... .......... 137 TGTTGATGAC GACATGCTTG AGATGGTTGT ATTAATAGCT TGCATTAGTT TCGATCTTTT 2855 .......... .......... .......... .......... .......... .......... 137 CTATGGTATC AATTCCCATA GTTATACGTT GTTGTCGAAA TGTTTATTTA GTTATTCTTT 2915 .......... .......... .......... .......... .......... .......... 137 GACATGAAAT TTTTTTACTT TATGAGTAAC TGATAATATA CTTGCAATTA CAGGTGTGGA 2975 ||||||| .......... .......... .......... .......... .......... ...GTGTGGA 144 CACTGTAAGA GTCTTGCTCC TGAGGTACAC TTTCTTCTAT ACAGTGCTTA ATGAAGGAAG 3035 |||||||||| |||||||||| |||| CACTGTAAGA GTCTTGCTCC TGAG...... .......... .......... .......... 168 GAATATCATT TTTCTCTGTC ATTATGTTTT TTCTTGGCAT TTTCAATCTA TGCAACTGAT 3095 .......... .......... .......... .......... .......... .......... 168 TTAATGTTAA ATTATGTTTC TTTCCAGTAT GAAAAAGCTG CCTCAGAGCT GAGTAGTCAT 3155 ||| |||||||||| |||||||||| |||||||||| .......... .......... .......TAT GAAAAAGCTG CCTCAGAGCT GAGTAGTCAT 201 GACCCTCCAA TTGTTCTAGC TAAGTATGAT GCAAATGATG AAGCCAATAG AGAACTTTCA 3215 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GACCCTCCAA TTGTTCTAGC TAAGTATGAT GCAAATGATG AAGCCAATAG AGAACTTTCA 261 AAACAGTACG AGATCCAGGG TTTCCCAACT ATTAAGATAT TGAGAGATGG AGGAAAGAAA 3275 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAACAGTACG AGATCCAGGG TTTCCCAACT ATTAAGATAT TGAGAGATGG AGGAAAGAAA 321 GTTCAAGACT ATAACGGTCC TCGTGAAGCA GCTGGTATTG TATCCTACTT GAAGAAACAA 3335 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTCAAGACT ATAACGGTCC TCGTGAAGCA GCTGGTATTG TATCCTACTT GAAGAAACAA 381 GTGGGTCCTG CATCTGCTGA AATCAAGTCG AAGGAAGATG CCACAAACCT TATTGATGAG 3395 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGGGTCCTG CATCTGCTGA AATCAAGTCG AAGGAAGATG CCACAAACCT TATTGATGAG 441 AAAAGTATCT TTGTTGTAAG TGGTGATACT TTTGATGTTT TACTTATCAT TACTGAAGTT 3455 |||||||||| ||||| AAAAGTATCT TTGTT..... .......... .......... .......... .......... 456 TATTTTCAGC ATGCCATAGC TTCTTGCTGT CTAAAATCTT TCTGTTTCTT TAGGTTGGTA 3515 ||||||| .......... .......... .......... .......... .......... ...GTTGGTA 463 TATTTCCAGA CCCCTCCGGA GAGAAATTCG AGAACTATTT AACGCTAGCT GAAAAACTGC 3575 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATTTCCAGA CCCCTCCGGA GAGAAATTCG AGAACTATTT AACGCTAGCT GAAAAACTGC 523 GAGGCGAGTT CGATTTTGCT CACACT 3601 |||||||||| |||||||||| |||||| GAGGCGAGTT CGATTTTGCT CACACT 549 hqPGS_C06HBa0054K13.1-11+_SGN-E329306+ (1656 1792,2969 2999,3123 3410,3509 3601) ******************************************************************************** EST sequence 98 +strand 415 n (File: SGN-E257100+) 1 AATATGTGTT GACTTTGGAC CATTCTAACC TCACTGAGAC TGTTGCTAAG CACAACTTCA 61 TTGTTGTTGA ATTCTATGCA CCTTGGTGTG GACACTGTAA GAGTCTTGCT CCTGAGTATG 121 AAAAAGCTGC CTCAGAGCTG AGTAGTCATG ACCCTCCAAT TGTTCTAGCT AAGTATGATG 181 CAAATGATGA AGCCAATAGA GAACTTTCAA AACAGTACGA GATCCAGGGT TTCCCAACTA 241 TTAAAATATT GAGAGATGGA GGAAAGAAAG TTCAAGACTA TAACGGTCCT CGTGAAACAG 301 CTGGTATTGT ATCCTACTTG AAGAAACAAG TGGGTCCTGC ATCTGCTGAA ATCAAGTCGA 361 AGGAAGATGC CACAAACCTT ATTGATGAGA AAAGTATCTT TGTTGTTGGT ATATT Predicted gene structure (within gDNA segment 1108 to 4112): Exon 1 1708 1792 ( 85 n); cDNA 1 85 ( 85 n); score: 1.000 Intron 1 1793 2968 (1176 n); Pd: 1.000 (s: 1.00), Pa: 0.997 (s: 0) Exon 2 2969 2999 ( 31 n); cDNA 86 116 ( 31 n); score: 1.000 Intron 2 3000 3122 ( 123 n); Pd: 0.917 (s: 0), Pa: 0.997 (s: 1.00) Exon 3 3123 3410 ( 288 n); cDNA 117 404 ( 288 n); score: 0.993 Intron 3 3411 3508 ( 98 n); Pd: 0.907 (s: 1.00), Pa: 0.997 (s: 0) Exon 4 3509 3519 ( 11 n); cDNA 405 415 ( 11 n); score: 1.000 MATCH C06HBa0054K13.1-11+ SGN-E257100+ 0.995 415 1.000 C PGS_C06HBa0054K13.1-11+_SGN-E257100+ (1708 1792,2969 2999,3123 3410,3509 3519) Alignment (genomic DNA sequence = upper lines): AATATGTGTT GACTTTGGAC CATTCTAACC TCACTGAGAC TGTTGCTAAG CACAACTTCA 1767 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATATGTGTT GACTTTGGAC CATTCTAACC TCACTGAGAC TGTTGCTAAG CACAACTTCA 60 TTGTTGTTGA ATTCTATGCA CCTTGGTAAG TCATCTGCTG TTTTTTTTTC TATTTATTTT 1827 |||||||||| |||||||||| ||||| TTGTTGTTGA ATTCTATGCA CCTTG..... .......... .......... .......... 85 CTTGAAAAAA GTTCATTTTT TTTGCTTGTT GAATCTGTAT GTGCAGAATG TAATGAATGA 1887 .......... .......... .......... .......... .......... .......... 85 TTGGATGTAA GGGGTTTTGT TTTTGATCTG TTTTTTTTTT GTTATTTTAG TGAATTTTTG 1947 .......... .......... .......... .......... .......... .......... 85 CTGTAATTTT TTTGTTTTCA TAAGCTGTGT GAGGAATGCA TCAAGATCAG TTCTTTATGT 2007 .......... .......... .......... .......... .......... .......... 85 TAATTTGTCT TAAAGGGTTC ATCAAGGACC CCTTTGGCTC TACTTTGCTG TTCCTGTTTT 2067 .......... .......... .......... .......... .......... .......... 85 TTTTTTTTTT TTGGAGTTTT ATCTTTTTGC TGGTTTCTCT GGCTTTAGAA ACTGCATGTG 2127 .......... .......... .......... .......... .......... .......... 85 CAGAAGATAA TCAATGACTG GTTCTTTTTC TTTTGGGGAA TTTAAGGTTT TGTTATGTAA 2187 .......... .......... .......... .......... .......... .......... 85 ATGGTTTTTT TTTCTGATTT TTCTGCTGTA ATTTTTTATT TTACACATTG ACTTGAATTT 2247 .......... .......... .......... .......... .......... .......... 85 GTCTGAAAGG GTTTTTCAAG GATCCTTTTG TTGATGGATG TATTTTGATT TGTGGATTGA 2307 .......... .......... .......... .......... .......... .......... 85 TTGAGGTTTT AAGGCTTTTT CTGTAAAAAG CTTCTTCTTT TAATTCATGG TTGATGCTTC 2367 .......... .......... .......... .......... .......... .......... 85 TAGAATCTGG ATTTGCTTGA TGAGTTCTAG GTTATAAGGT TTCCTCTTTT TATTTAATTT 2427 .......... .......... .......... .......... .......... .......... 85 GCTGCTTGTT TTTTGGTATT TAAAATCTCT GTGTCCAGAA TTTTACAAAA ATATTAATAA 2487 .......... .......... .......... .......... .......... .......... 85 ATCTGGATTT GTCTTTGTGT TCTGTGTTGC TGCAAGTTAA TGGTTTTTCC ATTTCTGTGA 2547 .......... .......... .......... .......... .......... .......... 85 CAGTCTAGTC AATTGGAATG TAAAATCTGT TTTTCTATTT TTGTGTATGT ATTTGGATCT 2607 .......... .......... .......... .......... .......... .......... 85 ATGTCAAGAG GTTCCAGTGA TCTGTGTTAA TAGAAGTGAT TCTTTTAGCC AAATTGTCTT 2667 .......... .......... .......... .......... .......... .......... 85 CTTGTTATGT GTAGTGGTGG ATCCAATGTA ATGGTACCAG GTTCATCTGA ACCTAATAGT 2727 .......... .......... .......... .......... .......... .......... 85 TTCGACTCGG AGCATAAATT TATGTGTAGG AATTCACTAA AATTGCAATA AATAGTAGAC 2787 .......... .......... .......... .......... .......... .......... 85 ATGAATGATG TTGATGACGA CATGCTTGAG ATGGTTGTAT TAATAGCTTG CATTAGTTTC 2847 .......... .......... .......... .......... .......... .......... 85 GATCTTTTCT ATGGTATCAA TTCCCATAGT TATACGTTGT TGTCGAAATG TTTATTTAGT 2907 .......... .......... .......... .......... .......... .......... 85 TATTCTTTGA CATGAAATTT TTTTACTTTA TGAGTAACTG ATAATATACT TGCAATTACA 2967 .......... .......... .......... .......... .......... .......... 85 GGTGTGGACA CTGTAAGAGT CTTGCTCCTG AGGTACACTT TCTTCTATAC AGTGCTTAAT 3027 ||||||||| |||||||||| |||||||||| || .GTGTGGACA CTGTAAGAGT CTTGCTCCTG AG........ .......... .......... 116 GAAGGAAGGA ATATCATTTT TCTCTGTCAT TATGTTTTTT CTTGGCATTT TCAATCTATG 3087 .......... .......... .......... .......... .......... .......... 116 CAACTGATTT AATGTTAAAT TATGTTTCTT TCCAGTATGA AAAAGCTGCC TCAGAGCTGA 3147 ||||| |||||||||| |||||||||| .......... .......... .......... .....TATGA AAAAGCTGCC TCAGAGCTGA 141 GTAGTCATGA CCCTCCAATT GTTCTAGCTA AGTATGATGC AAATGATGAA GCCAATAGAG 3207 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTAGTCATGA CCCTCCAATT GTTCTAGCTA AGTATGATGC AAATGATGAA GCCAATAGAG 201 AACTTTCAAA ACAGTACGAG ATCCAGGGTT TCCCAACTAT TAAGATATTG AGAGATGGAG 3267 |||||||||| |||||||||| |||||||||| |||||||||| ||| |||||| |||||||||| AACTTTCAAA ACAGTACGAG ATCCAGGGTT TCCCAACTAT TAAAATATTG AGAGATGGAG 261 GAAAGAAAGT TCAAGACTAT AACGGTCCTC GTGAAGCAGC TGGTATTGTA TCCTACTTGA 3327 |||||||||| |||||||||| |||||||||| ||||| |||| |||||||||| |||||||||| GAAAGAAAGT TCAAGACTAT AACGGTCCTC GTGAAACAGC TGGTATTGTA TCCTACTTGA 321 AGAAACAAGT GGGTCCTGCA TCTGCTGAAA TCAAGTCGAA GGAAGATGCC ACAAACCTTA 3387 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAAACAAGT GGGTCCTGCA TCTGCTGAAA TCAAGTCGAA GGAAGATGCC ACAAACCTTA 381 TTGATGAGAA AAGTATCTTT GTTGTAAGTG GTGATACTTT TGATGTTTTA CTTATCATTA 3447 |||||||||| |||||||||| ||| TTGATGAGAA AAGTATCTTT GTT....... .......... .......... .......... 404 CTGAAGTTTA TTTTCAGCAT GCCATAGCTT CTTGCTGTCT AAAATCTTTC TGTTTCTTTA 3507 .......... .......... .......... .......... .......... .......... 404 GGTTGGTATA TT 3519 ||||||||| || .GTTGGTATA TT 415 hqPGS_C06HBa0054K13.1-11+_SGN-E257100+ (1708 1792,2969 2999,3123 3410,3509 3519) ******************************************************************************** EST sequence 33 +strand 266 n (File: SGN-E325504+) 1 TGTTGACTTG GACCATTCTA ACCTCACTGA GACTGTGCTA CACAACTTAT TGTTGTGAAT 61 TCTATGCACC TTGGTGTGGA CACTGTAAGA GTCTTGCTCC TGAGTATGAA AAAGCTGCCT 121 CAGAGCTGAG TAGTCATGAC CCTCCAATTG TTCTAGCTAA GTATGATGCA AATGATGAAG 181 CCAATAGAGA ACTTTCAAAA CAGTACGAGA TCCAGGGTTT CCCAACTATT AAGATATTGA 241 GAGATGGAGG AAAGAAAGTT CAAGAC Predicted gene structure (within gDNA segment 1648 to 3894): Exon 1 1714 1792 ( 79 n); cDNA 1 73 ( 73 n); score: 0.924 Intron 1 1793 2968 (1176 n); Pd: 1.000 (s: 0.90), Pa: 0.997 (s: 0) Exon 2 2969 2999 ( 31 n); cDNA 74 104 ( 31 n); score: 1.000 Intron 2 3000 3122 ( 123 n); Pd: 0.917 (s: 0), Pa: 0.997 (s: 1.00) Exon 3 3123 3284 ( 162 n); cDNA 105 266 ( 162 n); score: 1.000 MATCH C06HBa0054K13.1-11+ SGN-E325504+ 0.975 272 1.023 C PGS_C06HBa0054K13.1-11+_SGN-E325504+ (1714 1792,2969 2999,3123 3284) Alignment (genomic DNA sequence = upper lines): TGTTGACTTT GGACCATTCT AACCTCACTG AGACTGTTGC TAAGCACAAC TTCATTGTTG 1773 ||||||||| |||||||||| |||||||||| |||||| ||| | | |||||| || ||||||| TGTTGACTT- GGACCATTCT AACCTCACTG AGACTG-TGC T-A-CACAAC TT-ATTGTTG 55 TTGAATTCTA TGCACCTTGG TAAGTCATCT GCTGTTTTTT TTTCTATTTA TTTTCTTGAA 1833 ||||||||| ||||||||| -TGAATTCTA TGCACCTTG. .......... .......... .......... .......... 73 AAAAGTTCAT TTTTTTTGCT TGTTGAATCT GTATGTGCAG AATGTAATGA ATGATTGGAT 1893 .......... .......... .......... .......... .......... .......... 73 GTAAGGGGTT TTGTTTTTGA TCTGTTTTTT TTTTGTTATT TTAGTGAATT TTTGCTGTAA 1953 .......... .......... .......... .......... .......... .......... 73 TTTTTTTGTT TTCATAAGCT GTGTGAGGAA TGCATCAAGA TCAGTTCTTT ATGTTAATTT 2013 .......... .......... .......... .......... .......... .......... 73 GTCTTAAAGG GTTCATCAAG GACCCCTTTG GCTCTACTTT GCTGTTCCTG TTTTTTTTTT 2073 .......... .......... .......... .......... .......... .......... 73 TTTTTTGGAG TTTTATCTTT TTGCTGGTTT CTCTGGCTTT AGAAACTGCA TGTGCAGAAG 2133 .......... .......... .......... .......... .......... .......... 73 ATAATCAATG ACTGGTTCTT TTTCTTTTGG GGAATTTAAG GTTTTGTTAT GTAAATGGTT 2193 .......... .......... .......... .......... .......... .......... 73 TTTTTTTCTG ATTTTTCTGC TGTAATTTTT TATTTTACAC ATTGACTTGA ATTTGTCTGA 2253 .......... .......... .......... .......... .......... .......... 73 AAGGGTTTTT CAAGGATCCT TTTGTTGATG GATGTATTTT GATTTGTGGA TTGATTGAGG 2313 .......... .......... .......... .......... .......... .......... 73 TTTTAAGGCT TTTTCTGTAA AAAGCTTCTT CTTTTAATTC ATGGTTGATG CTTCTAGAAT 2373 .......... .......... .......... .......... .......... .......... 73 CTGGATTTGC TTGATGAGTT CTAGGTTATA AGGTTTCCTC TTTTTATTTA ATTTGCTGCT 2433 .......... .......... .......... .......... .......... .......... 73 TGTTTTTTGG TATTTAAAAT CTCTGTGTCC AGAATTTTAC AAAAATATTA ATAAATCTGG 2493 .......... .......... .......... .......... .......... .......... 73 ATTTGTCTTT GTGTTCTGTG TTGCTGCAAG TTAATGGTTT TTCCATTTCT GTGACAGTCT 2553 .......... .......... .......... .......... .......... .......... 73 AGTCAATTGG AATGTAAAAT CTGTTTTTCT ATTTTTGTGT ATGTATTTGG ATCTATGTCA 2613 .......... .......... .......... .......... .......... .......... 73 AGAGGTTCCA GTGATCTGTG TTAATAGAAG TGATTCTTTT AGCCAAATTG TCTTCTTGTT 2673 .......... .......... .......... .......... .......... .......... 73 ATGTGTAGTG GTGGATCCAA TGTAATGGTA CCAGGTTCAT CTGAACCTAA TAGTTTCGAC 2733 .......... .......... .......... .......... .......... .......... 73 TCGGAGCATA AATTTATGTG TAGGAATTCA CTAAAATTGC AATAAATAGT AGACATGAAT 2793 .......... .......... .......... .......... .......... .......... 73 GATGTTGATG ACGACATGCT TGAGATGGTT GTATTAATAG CTTGCATTAG TTTCGATCTT 2853 .......... .......... .......... .......... .......... .......... 73 TTCTATGGTA TCAATTCCCA TAGTTATACG TTGTTGTCGA AATGTTTATT TAGTTATTCT 2913 .......... .......... .......... .......... .......... .......... 73 TTGACATGAA ATTTTTTTAC TTTATGAGTA ACTGATAATA TACTTGCAAT TACAGGTGTG 2973 ||||| .......... .......... .......... .......... .......... .....GTGTG 78 GACACTGTAA GAGTCTTGCT CCTGAGGTAC ACTTTCTTCT ATACAGTGCT TAATGAAGGA 3033 |||||||||| |||||||||| |||||| GACACTGTAA GAGTCTTGCT CCTGAG.... .......... .......... .......... 104 AGGAATATCA TTTTTCTCTG TCATTATGTT TTTTCTTGGC ATTTTCAATC TATGCAACTG 3093 .......... .......... .......... .......... .......... .......... 104 ATTTAATGTT AAATTATGTT TCTTTCCAGT ATGAAAAAGC TGCCTCAGAG CTGAGTAGTC 3153 | |||||||||| |||||||||| |||||||||| .......... .......... .........T ATGAAAAAGC TGCCTCAGAG CTGAGTAGTC 135 ATGACCCTCC AATTGTTCTA GCTAAGTATG ATGCAAATGA TGAAGCCAAT AGAGAACTTT 3213 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGACCCTCC AATTGTTCTA GCTAAGTATG ATGCAAATGA TGAAGCCAAT AGAGAACTTT 195 CAAAACAGTA CGAGATCCAG GGTTTCCCAA CTATTAAGAT ATTGAGAGAT GGAGGAAAGA 3273 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAAACAGTA CGAGATCCAG GGTTTCCCAA CTATTAAGAT ATTGAGAGAT GGAGGAAAGA 255 AAGTTCAAGA C 3284 |||||||||| | AAGTTCAAGA C 266 hqPGS_C06HBa0054K13.1-11+_SGN-E325504+ (1714 1792,2969 2999,3123 3284) ******************************************************************************** EST sequence 78 +strand 522 n (File: SGN-E321129+) 1 GACACTGTAA GAGTCTTGCT CCTGAGTGTG AAAAAGCTGC CTCAGAGCTG AGTAGTCATG 61 ACCCTCCAAT TGTTCTAGCT AAGTATGATG CAAATGATGA AGCCAATCGA GAACTTTCAA 121 AACAGTACGA GATCCAGGGT TTCCCAACTA TTAAGATATT GAGAGATGGA GGAAAGAAAG 181 TTCAAGACTA TAACGGTCCT CGTGAAGCAG CTGGTATTGT ATGCTACTTG AAGAAACAAG 241 TGGGTCCTGC ATCTGCTGAA ATCAAGTCGA AGGAAGATGC CTCACACCTT ATTGATGAGA 301 AAAGTATGTT TGTTGTTGGT ATATTTCCAG ACCCCTCCGG AGAGAAATTC GAGAACTATT 361 TAACGCTAGC TGAAAAACTG CGAGGCGAGT TCGATTGTGC TCACACTGTT GATGCTAAAC 421 ACCTCCCTCG GGGTGGACCA GTCAGCAAGC CCACTCTTCG TCTTCTAAAG CCATGTGATG 481 AACTCTTTGT TGATTTTGAG GACTTTGATG TCGATGCAAT GG Predicted gene structure (within gDNA segment 2245 to 4515): Exon 1 2974 2999 ( 26 n); cDNA 1 26 ( 26 n); score: 1.000 Intron 1 3000 3122 ( 123 n); Pd: 0.917 (s: 0), Pa: 0.997 (s: 0.98) Exon 2 3123 3410 ( 288 n); cDNA 27 314 ( 288 n); score: 0.979 Intron 2 3411 3508 ( 98 n); Pd: 0.907 (s: 0.94), Pa: 0.997 (s: 1.00) Exon 3 3509 3694 ( 186 n); cDNA 315 500 ( 186 n); score: 0.984 Intron 3 3695 3809 ( 115 n); Pd: 0.988 (s: 0.98), Pa: 0.999 (s: 0) Exon 4 3810 3831 ( 22 n); cDNA 501 522 ( 22 n); score: 1.000 MATCH C06HBa0054K13.1-11+ SGN-E321129+ 0.981 522 1.000 C PGS_C06HBa0054K13.1-11+_SGN-E321129+ (2974 2999,3123 3410,3509 3694,3810 3831) Alignment (genomic DNA sequence = upper lines): GACACTGTAA GAGTCTTGCT CCTGAGGTAC ACTTTCTTCT ATACAGTGCT TAATGAAGGA 3033 |||||||||| |||||||||| |||||| GACACTGTAA GAGTCTTGCT CCTGAG.... .......... .......... .......... 26 AGGAATATCA TTTTTCTCTG TCATTATGTT TTTTCTTGGC ATTTTCAATC TATGCAACTG 3093 .......... .......... .......... .......... .......... .......... 26 ATTTAATGTT AAATTATGTT TCTTTCCAGT ATGAAAAAGC TGCCTCAGAG CTGAGTAGTC 3153 | ||||||||| |||||||||| |||||||||| .......... .......... .........T GTGAAAAAGC TGCCTCAGAG CTGAGTAGTC 57 ATGACCCTCC AATTGTTCTA GCTAAGTATG ATGCAAATGA TGAAGCCAAT AGAGAACTTT 3213 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| ATGACCCTCC AATTGTTCTA GCTAAGTATG ATGCAAATGA TGAAGCCAAT CGAGAACTTT 117 CAAAACAGTA CGAGATCCAG GGTTTCCCAA CTATTAAGAT ATTGAGAGAT GGAGGAAAGA 3273 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAAACAGTA CGAGATCCAG GGTTTCCCAA CTATTAAGAT ATTGAGAGAT GGAGGAAAGA 177 AAGTTCAAGA CTATAACGGT CCTCGTGAAG CAGCTGGTAT TGTATCCTAC TTGAAGAAAC 3333 |||||||||| |||||||||| |||||||||| |||||||||| ||||| |||| |||||||||| AAGTTCAAGA CTATAACGGT CCTCGTGAAG CAGCTGGTAT TGTATGCTAC TTGAAGAAAC 237 AAGTGGGTCC TGCATCTGCT GAAATCAAGT CGAAGGAAGA TGCCACAAAC CTTATTGATG 3393 |||||||||| |||||||||| |||||||||| |||||||||| |||| || || |||||||||| AAGTGGGTCC TGCATCTGCT GAAATCAAGT CGAAGGAAGA TGCCTCACAC CTTATTGATG 297 AGAAAAGTAT CTTTGTTGTA AGTGGTGATA CTTTTGATGT TTTACTTATC ATTACTGAAG 3453 |||||||||| |||||| AGAAAAGTAT GTTTGTT... .......... .......... .......... .......... 314 TTTATTTTCA GCATGCCATA GCTTCTTGCT GTCTAAAATC TTTCTGTTTC TTTAGGTTGG 3513 ||||| .......... .......... .......... .......... .......... .....GTTGG 319 TATATTTCCA GACCCCTCCG GAGAGAAATT CGAGAACTAT TTAACGCTAG CTGAAAAACT 3573 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATATTTCCA GACCCCTCCG GAGAGAAATT CGAGAACTAT TTAACGCTAG CTGAAAAACT 379 GCGAGGCGAG TTCGATTTTG CTCACACTGT TGATGCTAAA CACCTCCCTC GGGGTGGACC 3633 |||||||||| ||||||| || |||||||||| |||||||||| |||||||||| |||||||||| GCGAGGCGAG TTCGATTGTG CTCACACTGT TGATGCTAAA CACCTCCCTC GGGGTGGACC 439 AGTCAACAAG CCCACTCTTC GTCTTCTAAA GCCATTTGAT GAACTCTTTG TTGATTTTGA 3693 ||||| |||| |||||||||| |||||||||| ||||| |||| |||||||||| |||||||||| AGTCAGCAAG CCCACTCTTC GTCTTCTAAA GCCATGTGAT GAACTCTTTG TTGATTTTGA 499 GGTATTACAG TTATCTGTGT ATATTTTTAT CTTTGATACT CATTGTATTA TGGTTATGAG 3753 | G......... .......... .......... .......... .......... .......... 500 GCTCAACTCT GTCCTATGTT ATCTTTTAAT TGGCCATTGA TTGTACATAC TTGCAGGACT 3813 |||| .......... .......... .......... .......... .......... ......GACT 504 TTGATGTCGA TGCAATGG 3831 |||||||||| |||||||| TTGATGTCGA TGCAATGG 522 hqPGS_C06HBa0054K13.1-11+_SGN-E321129+ (2974 2999,3123 3410,3509 3694,3810 3831) ******************************************************************************** EST sequence 55 +strand 650 n (File: SGN-E214854+) 1 AAGAGTCTTG CTCCTGAGTA TGAAAAAGCT GCCTCAGAGC TGAGTAGTCA TGACCCTCCA 61 ATTGTTCTAG CTAAGTATGA TGCAAATGAT GAAGCCAATA GAGAACTTTC AAAACAGTAC 121 GAGATCCAGG GTTTCCCAAC TATTAAGATA TTGAGAGATG GAGGAAAGAA AGTTCAAGAC 181 TATAACGGTC CTCGTGAAGC AGCTGGTATT GTATCCTACT TGAAGAAACA AGTGGGTCCT 241 GCATCTGCTG AAATCAAGTC GAAGGAAGAT GCCACAAACC TTATTGATGA GAAAAGTATC 301 TTTGTTGTTG GTATATTTCC AGACCCCTCC GGAGAGAAAT TCGAGAACTA TTTAACGCTA 361 GCTGAAAAAC TGCGAGGCGA GTTCGATTTT GCTCACACTG TTGATGCTAA ACACCTCCCT 421 CGGGGTGGAC CAGTCAACAA GCCCACTCTT CGTCTTCTAA AGCCATTTGA TGAACTCTTT 481 GTTGATTTTG AGGACTTTGA TGTCGATGCA ATGGAGAAGT TCATCTCAGA ATCTAGTATT 541 CCTGTTGTTA CTATTTTTGA CAATGACCCA AACAACCATC CTTATGTTAA CAAGTTCTTC 601 GAAGGCACCA ACGCCCAGGC ATTGCTATTT GTGAACTTTA GCTCTGAATT Predicted gene structure (within gDNA segment 2361 to 4771): Exon 1 2982 2999 ( 18 n); cDNA 1 18 ( 18 n); score: 1.000 Intron 1 3000 3122 ( 123 n); Pd: 0.917 (s: 0), Pa: 0.997 (s: 1.00) Exon 2 3123 3410 ( 288 n); cDNA 19 306 ( 288 n); score: 1.000 Intron 2 3411 3508 ( 98 n); Pd: 0.907 (s: 1.00), Pa: 0.997 (s: 1.00) Exon 3 3509 3694 ( 186 n); cDNA 307 492 ( 186 n); score: 1.000 Intron 3 3695 3809 ( 115 n); Pd: 0.988 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 4 3810 3935 ( 126 n); cDNA 493 618 ( 126 n); score: 0.992 Intron 4 3936 4129 ( 194 n); Pd: 0.981 (s: 0.98), Pa: 0.965 (s: 0) Exon 5 4130 4161 ( 32 n); cDNA 619 650 ( 32 n); score: 1.000 MATCH C06HBa0054K13.1-11+ SGN-E214854+ 0.998 650 1.000 C PGS_C06HBa0054K13.1-11+_SGN-E214854+ (2982 2999,3123 3410,3509 3694,3810 3935,4130 4161) Alignment (genomic DNA sequence = upper lines): AAGAGTCTTG CTCCTGAGGT ACACTTTCTT CTATACAGTG CTTAATGAAG GAAGGAATAT 3041 |||||||||| |||||||| AAGAGTCTTG CTCCTGAG.. .......... .......... .......... .......... 18 CATTTTTCTC TGTCATTATG TTTTTTCTTG GCATTTTCAA TCTATGCAAC TGATTTAATG 3101 .......... .......... .......... .......... .......... .......... 18 TTAAATTATG TTTCTTTCCA GTATGAAAAA GCTGCCTCAG AGCTGAGTAG TCATGACCCT 3161 ||||||||| |||||||||| |||||||||| |||||||||| .......... .......... .TATGAAAAA GCTGCCTCAG AGCTGAGTAG TCATGACCCT 57 CCAATTGTTC TAGCTAAGTA TGATGCAAAT GATGAAGCCA ATAGAGAACT TTCAAAACAG 3221 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCAATTGTTC TAGCTAAGTA TGATGCAAAT GATGAAGCCA ATAGAGAACT TTCAAAACAG 117 TACGAGATCC AGGGTTTCCC AACTATTAAG ATATTGAGAG ATGGAGGAAA GAAAGTTCAA 3281 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TACGAGATCC AGGGTTTCCC AACTATTAAG ATATTGAGAG ATGGAGGAAA GAAAGTTCAA 177 GACTATAACG GTCCTCGTGA AGCAGCTGGT ATTGTATCCT ACTTGAAGAA ACAAGTGGGT 3341 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GACTATAACG GTCCTCGTGA AGCAGCTGGT ATTGTATCCT ACTTGAAGAA ACAAGTGGGT 237 CCTGCATCTG CTGAAATCAA GTCGAAGGAA GATGCCACAA ACCTTATTGA TGAGAAAAGT 3401 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCTGCATCTG CTGAAATCAA GTCGAAGGAA GATGCCACAA ACCTTATTGA TGAGAAAAGT 297 ATCTTTGTTG TAAGTGGTGA TACTTTTGAT GTTTTACTTA TCATTACTGA AGTTTATTTT 3461 ||||||||| ATCTTTGTT. .......... .......... .......... .......... .......... 306 CAGCATGCCA TAGCTTCTTG CTGTCTAAAA TCTTTCTGTT TCTTTAGGTT GGTATATTTC 3521 ||| |||||||||| .......... .......... .......... .......... .......GTT GGTATATTTC 319 CAGACCCCTC CGGAGAGAAA TTCGAGAACT ATTTAACGCT AGCTGAAAAA CTGCGAGGCG 3581 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAGACCCCTC CGGAGAGAAA TTCGAGAACT ATTTAACGCT AGCTGAAAAA CTGCGAGGCG 379 AGTTCGATTT TGCTCACACT GTTGATGCTA AACACCTCCC TCGGGGTGGA CCAGTCAACA 3641 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTTCGATTT TGCTCACACT GTTGATGCTA AACACCTCCC TCGGGGTGGA CCAGTCAACA 439 AGCCCACTCT TCGTCTTCTA AAGCCATTTG ATGAACTCTT TGTTGATTTT GAGGTATTAC 3701 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||| AGCCCACTCT TCGTCTTCTA AAGCCATTTG ATGAACTCTT TGTTGATTTT GAG....... 492 AGTTATCTGT GTATATTTTT ATCTTTGATA CTCATTGTAT TATGGTTATG AGGCTCAACT 3761 .......... .......... .......... .......... .......... .......... 492 CTGTCCTATG TTATCTTTTA ATTGGCCATT GATTGTACAT ACTTGCAGGA CTTTGATGTC 3821 || |||||||||| .......... .......... .......... .......... ........GA CTTTGATGTC 504 GATGCAATGG AGAAGTTCAT CTCAGAATCT AGTATTCCTG TTGTTACTAT TTTTGACAAT 3881 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATGCAATGG AGAAGTTCAT CTCAGAATCT AGTATTCCTG TTGTTACTAT TTTTGACAAT 564 GACCCAAACA ACCATCCTTA TGTTAACAAG TTCTTCGAAG GCACCAACGC CAAGGTACTT 3941 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| | || GACCCAAACA ACCATCCTTA TGTTAACAAG TTCTTCGAAG GCACCAACGC CCAG...... 618 GATTCTGCGA GCTGTAATGC TTCAATTTGA CCTTATATTT CAACGTCAAG CAATTCTAGG 4001 .......... .......... .......... .......... .......... .......... 618 ATCTTCTCAT GAATTTTACA GTTATATGCT TGTACTTGTA TTATTTTCTT TTCATTCACT 4061 .......... .......... .......... .......... .......... .......... 618 AATATTTGAC AATTAACTTC AAAGTTCTAA GAGATTGATT TGTTTTTTTG ACATTTGCAA 4121 .......... .......... .......... .......... .......... .......... 618 ATCTACAGGC ATTGCTATTT GTGAACTTTA GCTCTGAATT 4161 || |||||||||| |||||||||| |||||||||| ........GC ATTGCTATTT GTGAACTTTA GCTCTGAATT 650 hqPGS_C06HBa0054K13.1-11+_SGN-E214854+ (2982 2999,3123 3410,3509 3694,3810 3935,4130 4161) ******************************************************************************** EST sequence 92 +strand 609 n (File: SGN-E259308+) 1 TTAATGTTAA ATTATGTTTC TTTCCAGTAT GAAAAAGCTG CCTCAGAGCT GAGTAGTCAT 61 GACCCTCCAA TTGTTCTAGC TAAGTATGAT GCAAATGATG AAGCCAATAG AGAACTTTCA 121 AAACAGTACG AGATCCAGGG TTTCCCAACT ATTAAGATAT TGAGAGATGG AGGAAAGAAA 181 GTTCAAGACT ATAACGGTCC TCGTGAAGCA GCTGGTATTG TATCCTACTT GAAGAAACAA 241 GTGGGTCCTG CATCTGCTGA AATCAAGTCG AAGGAAGATG CCACAAACCT TATTGATGAG 301 AAAAGTATCT TTGTTGTTGG TATATTTCCA GACCCCTCCG GAGAGAAATT CGAGAACTAT 361 TTAACGCTAG CTGAAAAACT GCGAGGCGAG TTCGATTTTG CTCACACTGT TGATGCTAAA 421 CACCTCCCTC GGGGTGGACC AGTCAACAAG CCCACTCTTC GTCTTCTAAA GCCATTTGAT 481 GAACTCTTTG TTGATTTTGA GGACTTTGAT GTCGATGCAA TGGAGAAGTT CATCTCAGAA 541 TCTAGTATTC CTGTTGTTAC TATTTTTGAC AATGACCCAA ACAACCATCC TTATGTTAAC 601 AAGTTCTTC Predicted gene structure (within gDNA segment 2496 to 4527): Exon 1 3096 3410 ( 315 n); cDNA 1 315 ( 315 n); score: 1.000 Intron 1 3411 3508 ( 98 n); Pd: 0.907 (s: 1.00), Pa: 0.997 (s: 1.00) Exon 2 3509 3694 ( 186 n); cDNA 316 501 ( 186 n); score: 1.000 Intron 2 3695 3809 ( 115 n); Pd: 0.988 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 3 3810 3917 ( 108 n); cDNA 502 609 ( 108 n); score: 1.000 MATCH C06HBa0054K13.1-11+ SGN-E259308+ 1.000 609 1.000 C PGS_C06HBa0054K13.1-11+_SGN-E259308+ (3096 3410,3509 3694,3810 3917) Alignment (genomic DNA sequence = upper lines): TTAATGTTAA ATTATGTTTC TTTCCAGTAT GAAAAAGCTG CCTCAGAGCT GAGTAGTCAT 3155 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTAATGTTAA ATTATGTTTC TTTCCAGTAT GAAAAAGCTG CCTCAGAGCT GAGTAGTCAT 60 GACCCTCCAA TTGTTCTAGC TAAGTATGAT GCAAATGATG AAGCCAATAG AGAACTTTCA 3215 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GACCCTCCAA TTGTTCTAGC TAAGTATGAT GCAAATGATG AAGCCAATAG AGAACTTTCA 120 AAACAGTACG AGATCCAGGG TTTCCCAACT ATTAAGATAT TGAGAGATGG AGGAAAGAAA 3275 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAACAGTACG AGATCCAGGG TTTCCCAACT ATTAAGATAT TGAGAGATGG AGGAAAGAAA 180 GTTCAAGACT ATAACGGTCC TCGTGAAGCA GCTGGTATTG TATCCTACTT GAAGAAACAA 3335 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTCAAGACT ATAACGGTCC TCGTGAAGCA GCTGGTATTG TATCCTACTT GAAGAAACAA 240 GTGGGTCCTG CATCTGCTGA AATCAAGTCG AAGGAAGATG CCACAAACCT TATTGATGAG 3395 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGGGTCCTG CATCTGCTGA AATCAAGTCG AAGGAAGATG CCACAAACCT TATTGATGAG 300 AAAAGTATCT TTGTTGTAAG TGGTGATACT TTTGATGTTT TACTTATCAT TACTGAAGTT 3455 |||||||||| ||||| AAAAGTATCT TTGTT..... .......... .......... .......... .......... 315 TATTTTCAGC ATGCCATAGC TTCTTGCTGT CTAAAATCTT TCTGTTTCTT TAGGTTGGTA 3515 ||||||| .......... .......... .......... .......... .......... ...GTTGGTA 322 TATTTCCAGA CCCCTCCGGA GAGAAATTCG AGAACTATTT AACGCTAGCT GAAAAACTGC 3575 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATTTCCAGA CCCCTCCGGA GAGAAATTCG AGAACTATTT AACGCTAGCT GAAAAACTGC 382 GAGGCGAGTT CGATTTTGCT CACACTGTTG ATGCTAAACA CCTCCCTCGG GGTGGACCAG 3635 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGGCGAGTT CGATTTTGCT CACACTGTTG ATGCTAAACA CCTCCCTCGG GGTGGACCAG 442 TCAACAAGCC CACTCTTCGT CTTCTAAAGC CATTTGATGA ACTCTTTGTT GATTTTGAGG 3695 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| TCAACAAGCC CACTCTTCGT CTTCTAAAGC CATTTGATGA ACTCTTTGTT GATTTTGAG. 501 TATTACAGTT ATCTGTGTAT ATTTTTATCT TTGATACTCA TTGTATTATG GTTATGAGGC 3755 .......... .......... .......... .......... .......... .......... 501 TCAACTCTGT CCTATGTTAT CTTTTAATTG GCCATTGATT GTACATACTT GCAGGACTTT 3815 |||||| .......... .......... .......... .......... .......... ....GACTTT 507 GATGTCGATG CAATGGAGAA GTTCATCTCA GAATCTAGTA TTCCTGTTGT TACTATTTTT 3875 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATGTCGATG CAATGGAGAA GTTCATCTCA GAATCTAGTA TTCCTGTTGT TACTATTTTT 567 GACAATGACC CAAACAACCA TCCTTATGTT AACAAGTTCT TC 3917 |||||||||| |||||||||| |||||||||| |||||||||| || GACAATGACC CAAACAACCA TCCTTATGTT AACAAGTTCT TC 609 hqPGS_C06HBa0054K13.1-11+_SGN-E259308+ (3096 3410,3509 3694,3810 3917) ******************************************************************************** EST sequence 54 +strand 510 n (File: SGN-E253683+) 1 TTAATGTTAA ATTATGTTTC TTTCCAGTAT GAATAATCTG CCTAAGAGCT GAGTAGTCAT 61 GACCCTACAA TTGTTCTAGC TAAGTATGAT GCAAATGATG AAGCCAATAG AGAACTTTGA 121 AAACAGTACG AGATCCAGGG TTTCCCAACT ATTAAGATAT TGAGAGATGG AGGAAAGAAA 181 GTTCAAGACT ATAACGGTCC TCGTGAAGCA GCTGGTATTG TATCCTACTT GAAGAAACAA 241 GTGGGTGCTG CATCTGCTGA AATCAAGTCG AAGGAAGATG CCACAGACCT TATTGATGAG 301 AAAAGTATCG AAGTTGTTGG TATATTTCCA GACCCCTCCG GAGAGAAATT CGAGAACTAT 361 TTAACGCTAG CTGAATAACT GCGAGGCGAG TTCGATTTTG CTCACACTGT TGATGCTAAA 421 CACCTCCCTC GGGGTGGACC AGTCAACAAG CCCACTCTTC GTCTTCTAAA GCCATTTGAT 481 GAACTCTGAG ATGATTTTGA GGACTTTGAT Predicted gene structure (within gDNA segment 2496 to 4520): Exon 1 3096 3410 ( 315 n); cDNA 1 315 ( 315 n); score: 0.968 Intron 1 3411 3508 ( 98 n); Pd: 0.907 (s: 0.92), Pa: 0.997 (s: 1.00) Exon 2 3509 3694 ( 186 n); cDNA 316 501 ( 186 n); score: 0.978 Intron 2 3695 3809 ( 115 n); Pd: 0.988 (s: 0.94), Pa: 0.999 (s: 0) Exon 3 3810 3818 ( 9 n); cDNA 502 510 ( 9 n); score: 1.000 MATCH C06HBa0054K13.1-11+ SGN-E253683+ 0.972 510 1.000 C PGS_C06HBa0054K13.1-11+_SGN-E253683+ (3096 3410,3509 3694,3810 3818) Alignment (genomic DNA sequence = upper lines): TTAATGTTAA ATTATGTTTC TTTCCAGTAT GAAAAAGCTG CCTCAGAGCT GAGTAGTCAT 3155 |||||||||| |||||||||| |||||||||| ||| || ||| ||| |||||| |||||||||| TTAATGTTAA ATTATGTTTC TTTCCAGTAT GAATAATCTG CCTAAGAGCT GAGTAGTCAT 60 GACCCTCCAA TTGTTCTAGC TAAGTATGAT GCAAATGATG AAGCCAATAG AGAACTTTCA 3215 |||||| ||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||| | GACCCTACAA TTGTTCTAGC TAAGTATGAT GCAAATGATG AAGCCAATAG AGAACTTTGA 120 AAACAGTACG AGATCCAGGG TTTCCCAACT ATTAAGATAT TGAGAGATGG AGGAAAGAAA 3275 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAACAGTACG AGATCCAGGG TTTCCCAACT ATTAAGATAT TGAGAGATGG AGGAAAGAAA 180 GTTCAAGACT ATAACGGTCC TCGTGAAGCA GCTGGTATTG TATCCTACTT GAAGAAACAA 3335 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTCAAGACT ATAACGGTCC TCGTGAAGCA GCTGGTATTG TATCCTACTT GAAGAAACAA 240 GTGGGTCCTG CATCTGCTGA AATCAAGTCG AAGGAAGATG CCACAAACCT TATTGATGAG 3395 |||||| ||| |||||||||| |||||||||| |||||||||| ||||| |||| |||||||||| GTGGGTGCTG CATCTGCTGA AATCAAGTCG AAGGAAGATG CCACAGACCT TATTGATGAG 300 AAAAGTATCT TTGTTGTAAG TGGTGATACT TTTGATGTTT TACTTATCAT TACTGAAGTT 3455 ||||||||| ||| AAAAGTATCG AAGTT..... .......... .......... .......... .......... 315 TATTTTCAGC ATGCCATAGC TTCTTGCTGT CTAAAATCTT TCTGTTTCTT TAGGTTGGTA 3515 ||||||| .......... .......... .......... .......... .......... ...GTTGGTA 322 TATTTCCAGA CCCCTCCGGA GAGAAATTCG AGAACTATTT AACGCTAGCT GAAAAACTGC 3575 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||| |||||| TATTTCCAGA CCCCTCCGGA GAGAAATTCG AGAACTATTT AACGCTAGCT GAATAACTGC 382 GAGGCGAGTT CGATTTTGCT CACACTGTTG ATGCTAAACA CCTCCCTCGG GGTGGACCAG 3635 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGGCGAGTT CGATTTTGCT CACACTGTTG ATGCTAAACA CCTCCCTCGG GGTGGACCAG 442 TCAACAAGCC CACTCTTCGT CTTCTAAAGC CATTTGATGA ACTCTTTGTT GATTTTGAGG 3695 |||||||||| |||||||||| |||||||||| |||||||||| ||||| | | ||||||||| TCAACAAGCC CACTCTTCGT CTTCTAAAGC CATTTGATGA ACTCTGAGAT GATTTTGAG. 501 TATTACAGTT ATCTGTGTAT ATTTTTATCT TTGATACTCA TTGTATTATG GTTATGAGGC 3755 .......... .......... .......... .......... .......... .......... 501 TCAACTCTGT CCTATGTTAT CTTTTAATTG GCCATTGATT GTACATACTT GCAGGACTTT 3815 |||||| .......... .......... .......... .......... .......... ....GACTTT 507 GAT 3818 ||| GAT 510 hqPGS_C06HBa0054K13.1-11+_SGN-E253683+ (3096 3410,3509 3694,3810 3818) ******************************************************************************** EST sequence 100 +strand 696 n (File: SGN-E257121+) 1 ATGTTAAATT ATGTTTCTTT CCAGTATGAA AAAGCTGCCT CAGAGCTGAG TAGTCATGAC 61 CCTCCAATTG TTCTAGCTAA GTATGATGCA AATGATGAAG CCAATAGAGA ACTTTCAAAA 121 CAGTACGAGA TCCAGGGTTT CCCAACTATT AAGATATTGA GAGATGGAGG AAAGAAAGTT 181 CAAGACTATA ACGGTCCTCG TGAAGCAGCT GGTATTGTAT CCTACTTGAA GAAACAAGTG 241 GGTCCTGCAT CTGCTGAAAT CAAGTCGAAG GAAGATGCCA CAAACCTTAT TGATGAGAAA 301 AGTATCTTTG TTGTTGGTAT ATTTCCAGAC CCCTCCGGAG AGAAATTCGA GAACTATTTA 361 ACGCTAGCTG AAAAACTGCG AGGCGAGTTC GATTTTGCTC ACACTGTTGA TGCTAAACAC 421 CTCCCTCGGG GTGGACCAGT CAACAAGCCC ACTCTTCGTC TTCTAAAGCC ATTTGATGAA 481 CTCTTTGTTG ATTTTGAGGA CTTTGATGTC GATGCAATGG AGAAGTTCAT CTCAGAATCT 541 AGTATTCCTG TTGTTACTAT TTTTGACAAT GACCCAAACA ACCATCCTTA TGTTAACAAG 601 TTCTTCGAAG GCACCAACGC CAAGGCATTG CTATTTGTGA ACTTTAGCTC TGAATTTGAT 661 GCTTTTAAAG TCCAAGTACA CGATGTTGCT GTGATT Predicted gene structure (within gDNA segment 2499 to 4811): Exon 1 3099 3410 ( 312 n); cDNA 1 312 ( 312 n); score: 1.000 Intron 1 3411 3508 ( 98 n); Pd: 0.907 (s: 1.00), Pa: 0.997 (s: 1.00) Exon 2 3509 3694 ( 186 n); cDNA 313 498 ( 186 n); score: 1.000 Intron 2 3695 3809 ( 115 n); Pd: 0.988 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 3 3810 3935 ( 126 n); cDNA 499 624 ( 126 n); score: 1.000 Intron 3 3936 4129 ( 194 n); Pd: 0.981 (s: 1.00), Pa: 0.965 (s: 0.95) Exon 4 4130 4201 ( 72 n); cDNA 625 696 ( 72 n); score: 0.951 MATCH C06HBa0054K13.1-11+ SGN-E257121+ 0.995 696 1.000 C PGS_C06HBa0054K13.1-11+_SGN-E257121+ (3099 3410,3509 3694,3810 3935,4130 4201) Alignment (genomic DNA sequence = upper lines): ATGTTAAATT ATGTTTCTTT CCAGTATGAA AAAGCTGCCT CAGAGCTGAG TAGTCATGAC 3158 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGTTAAATT ATGTTTCTTT CCAGTATGAA AAAGCTGCCT CAGAGCTGAG TAGTCATGAC 60 CCTCCAATTG TTCTAGCTAA GTATGATGCA AATGATGAAG CCAATAGAGA ACTTTCAAAA 3218 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCTCCAATTG TTCTAGCTAA GTATGATGCA AATGATGAAG CCAATAGAGA ACTTTCAAAA 120 CAGTACGAGA TCCAGGGTTT CCCAACTATT AAGATATTGA GAGATGGAGG AAAGAAAGTT 3278 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAGTACGAGA TCCAGGGTTT CCCAACTATT AAGATATTGA GAGATGGAGG AAAGAAAGTT 180 CAAGACTATA ACGGTCCTCG TGAAGCAGCT GGTATTGTAT CCTACTTGAA GAAACAAGTG 3338 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAGACTATA ACGGTCCTCG TGAAGCAGCT GGTATTGTAT CCTACTTGAA GAAACAAGTG 240 GGTCCTGCAT CTGCTGAAAT CAAGTCGAAG GAAGATGCCA CAAACCTTAT TGATGAGAAA 3398 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGTCCTGCAT CTGCTGAAAT CAAGTCGAAG GAAGATGCCA CAAACCTTAT TGATGAGAAA 300 AGTATCTTTG TTGTAAGTGG TGATACTTTT GATGTTTTAC TTATCATTAC TGAAGTTTAT 3458 |||||||||| || AGTATCTTTG TT........ .......... .......... .......... .......... 312 TTTCAGCATG CCATAGCTTC TTGCTGTCTA AAATCTTTCT GTTTCTTTAG GTTGGTATAT 3518 |||||||||| .......... .......... .......... .......... .......... GTTGGTATAT 322 TTCCAGACCC CTCCGGAGAG AAATTCGAGA ACTATTTAAC GCTAGCTGAA AAACTGCGAG 3578 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCCAGACCC CTCCGGAGAG AAATTCGAGA ACTATTTAAC GCTAGCTGAA AAACTGCGAG 382 GCGAGTTCGA TTTTGCTCAC ACTGTTGATG CTAAACACCT CCCTCGGGGT GGACCAGTCA 3638 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCGAGTTCGA TTTTGCTCAC ACTGTTGATG CTAAACACCT CCCTCGGGGT GGACCAGTCA 442 ACAAGCCCAC TCTTCGTCTT CTAAAGCCAT TTGATGAACT CTTTGTTGAT TTTGAGGTAT 3698 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||| ACAAGCCCAC TCTTCGTCTT CTAAAGCCAT TTGATGAACT CTTTGTTGAT TTTGAG.... 498 TACAGTTATC TGTGTATATT TTTATCTTTG ATACTCATTG TATTATGGTT ATGAGGCTCA 3758 .......... .......... .......... .......... .......... .......... 498 ACTCTGTCCT ATGTTATCTT TTAATTGGCC ATTGATTGTA CATACTTGCA GGACTTTGAT 3818 ||||||||| .......... .......... .......... .......... .......... .GACTTTGAT 507 GTCGATGCAA TGGAGAAGTT CATCTCAGAA TCTAGTATTC CTGTTGTTAC TATTTTTGAC 3878 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTCGATGCAA TGGAGAAGTT CATCTCAGAA TCTAGTATTC CTGTTGTTAC TATTTTTGAC 567 AATGACCCAA ACAACCATCC TTATGTTAAC AAGTTCTTCG AAGGCACCAA CGCCAAGGTA 3938 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||| AATGACCCAA ACAACCATCC TTATGTTAAC AAGTTCTTCG AAGGCACCAA CGCCAAG... 624 CTTGATTCTG CGAGCTGTAA TGCTTCAATT TGACCTTATA TTTCAACGTC AAGCAATTCT 3998 .......... .......... .......... .......... .......... .......... 624 AGGATCTTCT CATGAATTTT ACAGTTATAT GCTTGTACTT GTATTATTTT CTTTTCATTC 4058 .......... .......... .......... .......... .......... .......... 624 ACTAATATTT GACAATTAAC TTCAAAGTTC TAAGAGATTG ATTTGTTTTT TTGACATTTG 4118 .......... .......... .......... .......... .......... .......... 624 CAAATCTACA GGCATTGCTA TTTGTGAACT TTAGCTCTGA ATTTGATGCT TTT-AAGTCC 4177 ||||||||| |||||||||| |||||||||| |||||||||| ||| |||||| .......... .GCATTGCTA TTTGTGAACT TTAGCTCTGA ATTTGATGCT TTTAAAGTCC 673 AAGTACAACG ATGTTGCTGT GATT 4201 |||||| ||| |||||||||| |||| AAGTAC-ACG ATGTTGCTGT GATT 696 hqPGS_C06HBa0054K13.1-11+_SGN-E257121+ (3099 3410,3509 3694,3810 3935,4130 4201) ******************************************************************************** EST sequence 10 +strand 466 n (File: SGN-E294728+) 1 AAAAAGCTGT CTCAGAGCTG AGTAGTCATG ACCCTCCAAT TGTTCTAGCT AAGTATGATG 61 CAAATGATGA AGCCAATAGA GAACTTTCAA AACAGTACGA GATCCAGGGT TTCCCAACTA 121 TTAAGATATT GAGAGATGGA GGAAAGAAAG TTCAAGACTA TAACGGTCCT CGTGAAGCAG 181 CTGGTATTGT ATCCTACTTG AAGAAACAAG TGGGTCCTGC ATCTGCTGAA ATCAAGTCGG 241 AGGAAGATGC CACAAACCTT ATTGATGAGA AAAGCATCTT TGTTGTTGGT ATATTTCCAG 301 ACCCCTCCGG AGAGAAATTC GAGAACTATT TAACGCTAGC TGAAAAACTG CGAGGCGAGT 361 TCGATTTTGC TCACACTGTT GATGCTAAAC ACCTCCCTCG GGGTGGACCA GTCAACAAGC 421 CCACTCTTCG CCTTCTAAAG CCATTTGATG AACTCTTTGT TGATTT Predicted gene structure (within gDNA segment 2437 to 4300): Exon 1 3127 3410 ( 284 n); cDNA 1 284 ( 284 n); score: 0.989 Intron 1 3411 3508 ( 98 n); Pd: 0.907 (s: 0.96), Pa: 0.997 (s: 1.00) Exon 2 3509 3690 ( 182 n); cDNA 285 466 ( 182 n); score: 0.995 MATCH C06HBa0054K13.1-11+ SGN-E294728+ 0.991 466 1.000 C PGS_C06HBa0054K13.1-11+_SGN-E294728+ (3127 3410,3509 3690) Alignment (genomic DNA sequence = upper lines): AAAAAGCTGC CTCAGAGCTG AGTAGTCATG ACCCTCCAAT TGTTCTAGCT AAGTATGATG 3186 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAAAGCTGT CTCAGAGCTG AGTAGTCATG ACCCTCCAAT TGTTCTAGCT AAGTATGATG 60 CAAATGATGA AGCCAATAGA GAACTTTCAA AACAGTACGA GATCCAGGGT TTCCCAACTA 3246 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAATGATGA AGCCAATAGA GAACTTTCAA AACAGTACGA GATCCAGGGT TTCCCAACTA 120 TTAAGATATT GAGAGATGGA GGAAAGAAAG TTCAAGACTA TAACGGTCCT CGTGAAGCAG 3306 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTAAGATATT GAGAGATGGA GGAAAGAAAG TTCAAGACTA TAACGGTCCT CGTGAAGCAG 180 CTGGTATTGT ATCCTACTTG AAGAAACAAG TGGGTCCTGC ATCTGCTGAA ATCAAGTCGA 3366 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| CTGGTATTGT ATCCTACTTG AAGAAACAAG TGGGTCCTGC ATCTGCTGAA ATCAAGTCGG 240 AGGAAGATGC CACAAACCTT ATTGATGAGA AAAGTATCTT TGTTGTAAGT GGTGATACTT 3426 |||||||||| |||||||||| |||||||||| |||| ||||| |||| AGGAAGATGC CACAAACCTT ATTGATGAGA AAAGCATCTT TGTT...... .......... 284 TTGATGTTTT ACTTATCATT ACTGAAGTTT ATTTTCAGCA TGCCATAGCT TCTTGCTGTC 3486 .......... .......... .......... .......... .......... .......... 284 TAAAATCTTT CTGTTTCTTT AGGTTGGTAT ATTTCCAGAC CCCTCCGGAG AGAAATTCGA 3546 |||||||| |||||||||| |||||||||| |||||||||| .......... .......... ..GTTGGTAT ATTTCCAGAC CCCTCCGGAG AGAAATTCGA 322 GAACTATTTA ACGCTAGCTG AAAAACTGCG AGGCGAGTTC GATTTTGCTC ACACTGTTGA 3606 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAACTATTTA ACGCTAGCTG AAAAACTGCG AGGCGAGTTC GATTTTGCTC ACACTGTTGA 382 TGCTAAACAC CTCCCTCGGG GTGGACCAGT CAACAAGCCC ACTCTTCGTC TTCTAAAGCC 3666 |||||||||| |||||||||| |||||||||| |||||||||| |||||||| | |||||||||| TGCTAAACAC CTCCCTCGGG GTGGACCAGT CAACAAGCCC ACTCTTCGCC TTCTAAAGCC 442 ATTTGATGAA CTCTTTGTTG ATTT 3690 |||||||||| |||||||||| |||| ATTTGATGAA CTCTTTGTTG ATTT 466 hqPGS_C06HBa0054K13.1-11+_SGN-E294728+ (3127 3410,3509 3690) ******************************************************************************** EST sequence 11 +strand 466 n (File: SGN-E294729+) 1 AAAAAGCTGT CTCAGAGCTG AGTAGTCATG ACCCTCCAAT TGTTCTAGCT AAGTATGATG 61 CAAATGATGA AGCCAATAGA GAACTTTCAA AACAGTACGA GATCCAGGGT TTCCCAACTA 121 TTAAGATATT GAGAGATGGA GGAAAGAAAG TTCAAGACTA TAACGGTCCT CGTGAAGCAG 181 CTGGTATTGT ATCCTACTTG AAGAAACAAG TGGGTCCTGC ATCTGCTGAA ATCAAGTCGG 241 AGGAAGATGC CACAAACCTT ATTGATGAGA AAAGCATCTT TGTTGTTGGT ATATTTCCAG 301 ACCCCTCCGG AGAGAAATTC GAGAACTATT TAACGCTAGC TGAAAAACTG CGAGGCGAGT 361 TCGATTTTGC TCACACTGTT GATGCTAAAC ACCTCCCTCG GGGTGGACCA GTCAACAAGC 421 CCACTCTTCG CCTTCTAAAG CCATTTGATG AACTCTTTGT TGATTT Predicted gene structure (within gDNA segment 2437 to 4300): Exon 1 3127 3410 ( 284 n); cDNA 1 284 ( 284 n); score: 0.989 Intron 1 3411 3508 ( 98 n); Pd: 0.907 (s: 0.96), Pa: 0.997 (s: 1.00) Exon 2 3509 3690 ( 182 n); cDNA 285 466 ( 182 n); score: 0.995 MATCH C06HBa0054K13.1-11+ SGN-E294729+ 0.991 466 1.000 C PGS_C06HBa0054K13.1-11+_SGN-E294729+ (3127 3410,3509 3690) Alignment (genomic DNA sequence = upper lines): AAAAAGCTGC CTCAGAGCTG AGTAGTCATG ACCCTCCAAT TGTTCTAGCT AAGTATGATG 3186 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAAAGCTGT CTCAGAGCTG AGTAGTCATG ACCCTCCAAT TGTTCTAGCT AAGTATGATG 60 CAAATGATGA AGCCAATAGA GAACTTTCAA AACAGTACGA GATCCAGGGT TTCCCAACTA 3246 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAATGATGA AGCCAATAGA GAACTTTCAA AACAGTACGA GATCCAGGGT TTCCCAACTA 120 TTAAGATATT GAGAGATGGA GGAAAGAAAG TTCAAGACTA TAACGGTCCT CGTGAAGCAG 3306 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTAAGATATT GAGAGATGGA GGAAAGAAAG TTCAAGACTA TAACGGTCCT CGTGAAGCAG 180 CTGGTATTGT ATCCTACTTG AAGAAACAAG TGGGTCCTGC ATCTGCTGAA ATCAAGTCGA 3366 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| CTGGTATTGT ATCCTACTTG AAGAAACAAG TGGGTCCTGC ATCTGCTGAA ATCAAGTCGG 240 AGGAAGATGC CACAAACCTT ATTGATGAGA AAAGTATCTT TGTTGTAAGT GGTGATACTT 3426 |||||||||| |||||||||| |||||||||| |||| ||||| |||| AGGAAGATGC CACAAACCTT ATTGATGAGA AAAGCATCTT TGTT...... .......... 284 TTGATGTTTT ACTTATCATT ACTGAAGTTT ATTTTCAGCA TGCCATAGCT TCTTGCTGTC 3486 .......... .......... .......... .......... .......... .......... 284 TAAAATCTTT CTGTTTCTTT AGGTTGGTAT ATTTCCAGAC CCCTCCGGAG AGAAATTCGA 3546 |||||||| |||||||||| |||||||||| |||||||||| .......... .......... ..GTTGGTAT ATTTCCAGAC CCCTCCGGAG AGAAATTCGA 322 GAACTATTTA ACGCTAGCTG AAAAACTGCG AGGCGAGTTC GATTTTGCTC ACACTGTTGA 3606 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAACTATTTA ACGCTAGCTG AAAAACTGCG AGGCGAGTTC GATTTTGCTC ACACTGTTGA 382 TGCTAAACAC CTCCCTCGGG GTGGACCAGT CAACAAGCCC ACTCTTCGTC TTCTAAAGCC 3666 |||||||||| |||||||||| |||||||||| |||||||||| |||||||| | |||||||||| TGCTAAACAC CTCCCTCGGG GTGGACCAGT CAACAAGCCC ACTCTTCGCC TTCTAAAGCC 442 ATTTGATGAA CTCTTTGTTG ATTT 3690 |||||||||| |||||||||| |||| ATTTGATGAA CTCTTTGTTG ATTT 466 hqPGS_C06HBa0054K13.1-11+_SGN-E294729+ (3127 3410,3509 3690) ******************************************************************************** EST sequence 124 +strand 464 n (File: SGN-E311885+) 1 AAAAAGCTGC CTCAGAGCTG AGTAGGCATG ACCCTCCAAT TGTTCTAGCT AAGTATGATG 61 CAAATGATGA AGCCAATAGA GAACTTTCAA AACAGTACGA GATCCAGGGT TTCCCAACTA 121 TTAAGATATT GAGAGATGGA GGAAAGAAAG TTCAAGACTA TAACGGTCCT CGTGAAGCAG 181 CTGGTATTGT ATCCTACTTG AAGAAACAAG TGGGTCCTGC ATCTGCTGAA ATCAAGTCGA 241 AGGAAGATGC CACAAACCTT ATTGATGAGA AAAGTATCTT TGTTGTTGGT ATATTTCCAG 301 ACCCCTCCGG AGAGAAATTC GAGAACTATT TAACGCTAGC TGAAAAACTG CGAGGCGAGT 361 TCGATTATGC TCACACTGTT GATGCTAAAC ACCTCCCTCG GGGTGGACCA GTCAACAAGC 421 CCACTCTTCG TCTTCTAAAG CCATTTGATG AACTCTTTGT TGAT Predicted gene structure (within gDNA segment 2527 to 4298): Exon 1 3127 3410 ( 284 n); cDNA 1 284 ( 284 n); score: 0.996 Intron 1 3411 3508 ( 98 n); Pd: 0.907 (s: 1.00), Pa: 0.997 (s: 1.00) Exon 2 3509 3688 ( 180 n); cDNA 285 464 ( 180 n); score: 0.994 MATCH C06HBa0054K13.1-11+ SGN-E311885+ 0.996 464 1.000 C PGS_C06HBa0054K13.1-11+_SGN-E311885+ (3127 3410,3509 3688) Alignment (genomic DNA sequence = upper lines): AAAAAGCTGC CTCAGAGCTG AGTAGTCATG ACCCTCCAAT TGTTCTAGCT AAGTATGATG 3186 |||||||||| |||||||||| ||||| |||| |||||||||| |||||||||| |||||||||| AAAAAGCTGC CTCAGAGCTG AGTAGGCATG ACCCTCCAAT TGTTCTAGCT AAGTATGATG 60 CAAATGATGA AGCCAATAGA GAACTTTCAA AACAGTACGA GATCCAGGGT TTCCCAACTA 3246 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAATGATGA AGCCAATAGA GAACTTTCAA AACAGTACGA GATCCAGGGT TTCCCAACTA 120 TTAAGATATT GAGAGATGGA GGAAAGAAAG TTCAAGACTA TAACGGTCCT CGTGAAGCAG 3306 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTAAGATATT GAGAGATGGA GGAAAGAAAG TTCAAGACTA TAACGGTCCT CGTGAAGCAG 180 CTGGTATTGT ATCCTACTTG AAGAAACAAG TGGGTCCTGC ATCTGCTGAA ATCAAGTCGA 3366 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGGTATTGT ATCCTACTTG AAGAAACAAG TGGGTCCTGC ATCTGCTGAA ATCAAGTCGA 240 AGGAAGATGC CACAAACCTT ATTGATGAGA AAAGTATCTT TGTTGTAAGT GGTGATACTT 3426 |||||||||| |||||||||| |||||||||| |||||||||| |||| AGGAAGATGC CACAAACCTT ATTGATGAGA AAAGTATCTT TGTT...... .......... 284 TTGATGTTTT ACTTATCATT ACTGAAGTTT ATTTTCAGCA TGCCATAGCT TCTTGCTGTC 3486 .......... .......... .......... .......... .......... .......... 284 TAAAATCTTT CTGTTTCTTT AGGTTGGTAT ATTTCCAGAC CCCTCCGGAG AGAAATTCGA 3546 |||||||| |||||||||| |||||||||| |||||||||| .......... .......... ..GTTGGTAT ATTTCCAGAC CCCTCCGGAG AGAAATTCGA 322 GAACTATTTA ACGCTAGCTG AAAAACTGCG AGGCGAGTTC GATTTTGCTC ACACTGTTGA 3606 |||||||||| |||||||||| |||||||||| |||||||||| |||| ||||| |||||||||| GAACTATTTA ACGCTAGCTG AAAAACTGCG AGGCGAGTTC GATTATGCTC ACACTGTTGA 382 TGCTAAACAC CTCCCTCGGG GTGGACCAGT CAACAAGCCC ACTCTTCGTC TTCTAAAGCC 3666 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCTAAACAC CTCCCTCGGG GTGGACCAGT CAACAAGCCC ACTCTTCGTC TTCTAAAGCC 442 ATTTGATGAA CTCTTTGTTG AT 3688 |||||||||| |||||||||| || ATTTGATGAA CTCTTTGTTG AT 464 hqPGS_C06HBa0054K13.1-11+_SGN-E311885+ (3127 3410,3509 3688) ******************************************************************************** EST sequence 122 +strand 234 n (File: SGN-E317628+) 1 AATAGAGATC TTTCAAAACA GTACGAGATC CAAGGTTTCC CAACTATTAA GATATTGAGA 61 GATGGAGGAA AGAAAGTTCA AGACTATTAC GGTCCTCGTG AAGCAGCTGG TATTGTATCC 121 TACTTGAAGA AACATGTGGG TCCTGCATCT GCTGAAATCA AGTCGAAGGA AGATGCCACA 181 AACCTTATGG ATGAGAAAAG TATCTTCGGT GTTGGTATAG TTCCAGACCC CTCC Predicted gene structure (within gDNA segment 2520 to 4296): Exon 1 3201 3410 ( 210 n); cDNA 1 210 ( 210 n); score: 0.967 Intron 1 3411 3508 ( 98 n); Pd: 0.907 (s: 0.94), Pa: 0.997 (s: 0) Exon 2 3509 3532 ( 24 n); cDNA 211 234 ( 24 n); score: 0.958 MATCH C06HBa0054K13.1-11+ SGN-E317628+ 0.967 234 1.000 C PGS_C06HBa0054K13.1-11+_SGN-E317628+ (3201 3410,3509 3532) Alignment (genomic DNA sequence = upper lines): AATAGAGAAC TTTCAAAACA GTACGAGATC CAGGGTTTCC CAACTATTAA GATATTGAGA 3260 |||||||| | |||||||||| |||||||||| || ||||||| |||||||||| |||||||||| AATAGAGATC TTTCAAAACA GTACGAGATC CAAGGTTTCC CAACTATTAA GATATTGAGA 60 GATGGAGGAA AGAAAGTTCA AGACTATAAC GGTCCTCGTG AAGCAGCTGG TATTGTATCC 3320 |||||||||| |||||||||| ||||||| || |||||||||| |||||||||| |||||||||| GATGGAGGAA AGAAAGTTCA AGACTATTAC GGTCCTCGTG AAGCAGCTGG TATTGTATCC 120 TACTTGAAGA AACAAGTGGG TCCTGCATCT GCTGAAATCA AGTCGAAGGA AGATGCCACA 3380 |||||||||| |||| ||||| |||||||||| |||||||||| |||||||||| |||||||||| TACTTGAAGA AACATGTGGG TCCTGCATCT GCTGAAATCA AGTCGAAGGA AGATGCCACA 180 AACCTTATTG ATGAGAAAAG TATCTTTGTT GTAAGTGGTG ATACTTTTGA TGTTTTACTT 3440 |||||||| | |||||||||| |||||| | | AACCTTATGG ATGAGAAAAG TATCTTCGGT .......... .......... .......... 210 ATCATTACTG AAGTTTATTT TCAGCATGCC ATAGCTTCTT GCTGTCTAAA ATCTTTCTGT 3500 .......... .......... .......... .......... .......... .......... 210 TTCTTTAGGT TGGTATATTT CCAGACCCCT CC 3532 || ||||||| || |||||||||| || ........GT TGGTATAGTT CCAGACCCCT CC 234 hqPGS_C06HBa0054K13.1-11+_SGN-E317628+ (3201 3410,3509 3532) ******************************************************************************** EST sequence 76 +strand 756 n (File: SGN-E335066+) 1 AACTTTCAAA ACAGTACGAG ATCCAGGGTT TCCCAACTAT TAAGATATTG AGAGATGGAG 61 GAAAGAAAGT TCAAGACTAT AACGGTCCTC GTGAAGCAGC TGGTATTGTA TCCTACTTGA 121 AGAAACAAGT GGGTCCTGCA TCTGCTGAAA TCAAGTCGAA GGAAGATGCC ACAAACCTTA 181 TTGATGAGAA AAGTATCTTT GTTGTTGGTA TATTTCCAGA CCCCTCCGGA GAGAAATTCG 241 AGAACTATTT AACGCTAGCT GAAAAACTGC GAGGCGAGTT CGATTTTGCT CACACTGTTG 301 ATGCTAAACA CCTCCCTCGG GGTGGACCAG TCAACAAGCC CACTCTTCGT CTTCTAAAGC 361 CATTTGATGA ACTCTTTGTT GATTTTGAGG ACTTTGATGT CGATGCAATG GAGAAGTTCA 421 TCTCAGAATC TAGTATTCCT GTTGTTACTA TTTTTGACAA TGACCCAAAC AACCATCCTT 481 ATGTTAACAA GTTCTTCGAA GGCACCAACG CCAAGGCATT GCTATTTGTG AACTTTAGCT 541 CTGAATTTGA TGCTTTTAAG TCCAAGTACA ACGATGTTGC TGTGATTTCA AAGGGGATGG 601 GGTGAGCTTT CTCTTGGGTG ATGTTGAGGC TGGTCAAGGT GCTTTTGAGT ACTTCGGACT 661 GAAGCCGGAA CAGGCACCTG TGATCATCAT AATGGACGCT GATGAACAAA AGTATATTAA 721 GGACCATGTG GAACCTGATG CCATTGCTGC TTACTT Predicted gene structure (within gDNA segment 2608 to 4982): Exon 1 3208 3410 ( 203 n); cDNA 1 203 ( 203 n); score: 1.000 Intron 1 3411 3508 ( 98 n); Pd: 0.907 (s: 1.00), Pa: 0.997 (s: 1.00) Exon 2 3509 3694 ( 186 n); cDNA 204 389 ( 186 n); score: 1.000 Intron 2 3695 3809 ( 115 n); Pd: 0.988 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 3 3810 3935 ( 126 n); cDNA 390 515 ( 126 n); score: 1.000 Intron 3 3936 4129 ( 194 n); Pd: 0.981 (s: 1.00), Pa: 0.965 (s: 1.00) Exon 4 4130 4264 ( 135 n); cDNA 516 649 ( 134 n); score: 0.993 Intron 4 4265 4359 ( 95 n); Pd: 0.997 (s: 1.00), Pa: 0.858 (s: 1.00) Exon 5 4360 4466 ( 107 n); cDNA 650 756 ( 107 n); score: 1.000 MATCH C06HBa0054K13.1-11+ SGN-E335066+ 0.999 757 1.001 C PGS_C06HBa0054K13.1-11+_SGN-E335066+ (3208 3410,3509 3694,3810 3935,4130 4264,4360 4466) Alignment (genomic DNA sequence = upper lines): AACTTTCAAA ACAGTACGAG ATCCAGGGTT TCCCAACTAT TAAGATATTG AGAGATGGAG 3267 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACTTTCAAA ACAGTACGAG ATCCAGGGTT TCCCAACTAT TAAGATATTG AGAGATGGAG 60 GAAAGAAAGT TCAAGACTAT AACGGTCCTC GTGAAGCAGC TGGTATTGTA TCCTACTTGA 3327 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAAGAAAGT TCAAGACTAT AACGGTCCTC GTGAAGCAGC TGGTATTGTA TCCTACTTGA 120 AGAAACAAGT GGGTCCTGCA TCTGCTGAAA TCAAGTCGAA GGAAGATGCC ACAAACCTTA 3387 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAAACAAGT GGGTCCTGCA TCTGCTGAAA TCAAGTCGAA GGAAGATGCC ACAAACCTTA 180 TTGATGAGAA AAGTATCTTT GTTGTAAGTG GTGATACTTT TGATGTTTTA CTTATCATTA 3447 |||||||||| |||||||||| ||| TTGATGAGAA AAGTATCTTT GTT....... .......... .......... .......... 203 CTGAAGTTTA TTTTCAGCAT GCCATAGCTT CTTGCTGTCT AAAATCTTTC TGTTTCTTTA 3507 .......... .......... .......... .......... .......... .......... 203 GGTTGGTATA TTTCCAGACC CCTCCGGAGA GAAATTCGAG AACTATTTAA CGCTAGCTGA 3567 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .GTTGGTATA TTTCCAGACC CCTCCGGAGA GAAATTCGAG AACTATTTAA CGCTAGCTGA 262 AAAACTGCGA GGCGAGTTCG ATTTTGCTCA CACTGTTGAT GCTAAACACC TCCCTCGGGG 3627 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAACTGCGA GGCGAGTTCG ATTTTGCTCA CACTGTTGAT GCTAAACACC TCCCTCGGGG 322 TGGACCAGTC AACAAGCCCA CTCTTCGTCT TCTAAAGCCA TTTGATGAAC TCTTTGTTGA 3687 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGACCAGTC AACAAGCCCA CTCTTCGTCT TCTAAAGCCA TTTGATGAAC TCTTTGTTGA 382 TTTTGAGGTA TTACAGTTAT CTGTGTATAT TTTTATCTTT GATACTCATT GTATTATGGT 3747 ||||||| TTTTGAG... .......... .......... .......... .......... .......... 389 TATGAGGCTC AACTCTGTCC TATGTTATCT TTTAATTGGC CATTGATTGT ACATACTTGC 3807 .......... .......... .......... .......... .......... .......... 389 AGGACTTTGA TGTCGATGCA ATGGAGAAGT TCATCTCAGA ATCTAGTATT CCTGTTGTTA 3867 |||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ..GACTTTGA TGTCGATGCA ATGGAGAAGT TCATCTCAGA ATCTAGTATT CCTGTTGTTA 447 CTATTTTTGA CAATGACCCA AACAACCATC CTTATGTTAA CAAGTTCTTC GAAGGCACCA 3927 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTATTTTTGA CAATGACCCA AACAACCATC CTTATGTTAA CAAGTTCTTC GAAGGCACCA 507 ACGCCAAGGT ACTTGATTCT GCGAGCTGTA ATGCTTCAAT TTGACCTTAT ATTTCAACGT 3987 |||||||| ACGCCAAG.. .......... .......... .......... .......... .......... 515 CAAGCAATTC TAGGATCTTC TCATGAATTT TACAGTTATA TGCTTGTACT TGTATTATTT 4047 .......... .......... .......... .......... .......... .......... 515 TCTTTTCATT CACTAATATT TGACAATTAA CTTCAAAGTT CTAAGAGATT GATTTGTTTT 4107 .......... .......... .......... .......... .......... .......... 515 TTTGACATTT GCAAATCTAC AGGCATTGCT ATTTGTGAAC TTTAGCTCTG AATTTGATGC 4167 |||||||| |||||||||| |||||||||| |||||||||| .......... .......... ..GCATTGCT ATTTGTGAAC TTTAGCTCTG AATTTGATGC 553 TTTTAAGTCC AAGTACAACG ATGTTGCTGT GATTTACAAA GGGGATGGGG TGAGCTTTCT 4227 |||||||||| |||||||||| |||||||||| ||||| |||| |||||||||| |||||||||| TTTTAAGTCC AAGTACAACG ATGTTGCTGT GATTT-CAAA GGGGATGGGG TGAGCTTTCT 612 CTTGGGTGAT GTTGAGGCTG GTCAAGGTGC TTTTGAGGTT GGTTAAAATT TTCAACTATC 4287 |||||||||| |||||||||| |||||||||| ||||||| CTTGGGTGAT GTTGAGGCTG GTCAAGGTGC TTTTGAG... .......... .......... 649 TGATTACAGT GTCATTGTAT CCATGATCAC GTAAAAAGGC GCGTTGAACA TTCGTTTTAT 4347 .......... .......... .......... .......... .......... .......... 649 TTGGAATTGC AGTACTTCGG ACTGAAGCCG GAACAGGCAC CTGTGATCAT CATAATGGAC 4407 |||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ..TACTTCGG ACTGAAGCCG GAACAGGCAC CTGTGATCAT CATAATGGAC 697 GCTGATGAAC AAAAGTATAT TAAGGACCAT GTGGAACCTG ATGCCATTGC TGCTTACTT 4466 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| GCTGATGAAC AAAAGTATAT TAAGGACCAT GTGGAACCTG ATGCCATTGC TGCTTACTT 756 hqPGS_C06HBa0054K13.1-11+_SGN-E335066+ (3208 3410,3509 3694,3810 3935,4130 4264,4360 4466) ******************************************************************************** EST sequence 70 +strand 590 n (File: SGN-E324735+) 1 AACTATTAAG ATATTGAGAG ATGGAGGAAA GAAAGTTCAA GACTATAACG GTCCTCGTGA 61 AGCAGCTGGT ATTGTATCCT ACTTGAAGAA ACAAGTGGGT CCTGCATCTG CTGAAATCAA 121 GTCGAAGGAA GATGCCACAA ACCTTATTGA TGAGAAAAGT ATCTTTGTTG TTGGTATATT 181 TCCAGACCCC TCCGGAGAGA AATTCGAGAA CTATTTAACG CTAGCTGAAA AACTGCGAGG 241 CGAGTTCGAT TTTGCTCACA CTGTTGATGC TAAACACCTC CCTCGGGGTG GACCAGTCAA 301 CAAGCCCACT CTTCGTCTTC TAAAGCCATT TGATGAACTC TTTGTTGATT TTGAGGACTT 361 TGATGTCGAT GCAATGGAGA AGTTCATCTC AGAATCTAGT ATTCCTGTTG TTACTATTTT 421 TGACAATGAC CCAAACAACC ATCCTTATGT TAACAAGTTC TTCGAAGGCA CCAACGCCAA 481 GGCATTGCTA TTTGTGAACT TTAGCTCTGA ATTTGATGCT TTTAAGTCCA AGTACAACGA 541 TGTTGCTGTG ATTTACAAAA GGGATGGGGT GAGCTTTCTC TTGGGTGATG Predicted gene structure (within gDNA segment 2642 to 4848): Exon 1 3242 3410 ( 169 n); cDNA 1 169 ( 169 n); score: 1.000 Intron 1 3411 3508 ( 98 n); Pd: 0.907 (s: 1.00), Pa: 0.997 (s: 1.00) Exon 2 3509 3694 ( 186 n); cDNA 170 355 ( 186 n); score: 1.000 Intron 2 3695 3809 ( 115 n); Pd: 0.988 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 3 3810 3935 ( 126 n); cDNA 356 481 ( 126 n); score: 1.000 Intron 3 3936 4129 ( 194 n); Pd: 0.981 (s: 1.00), Pa: 0.965 (s: 1.00) Exon 4 4130 4238 ( 109 n); cDNA 482 590 ( 109 n); score: 0.991 MATCH C06HBa0054K13.1-11+ SGN-E324735+ 0.998 590 1.000 C PGS_C06HBa0054K13.1-11+_SGN-E324735+ (3242 3410,3509 3694,3810 3935,4130 4238) Alignment (genomic DNA sequence = upper lines): AACTATTAAG ATATTGAGAG ATGGAGGAAA GAAAGTTCAA GACTATAACG GTCCTCGTGA 3301 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACTATTAAG ATATTGAGAG ATGGAGGAAA GAAAGTTCAA GACTATAACG GTCCTCGTGA 60 AGCAGCTGGT ATTGTATCCT ACTTGAAGAA ACAAGTGGGT CCTGCATCTG CTGAAATCAA 3361 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCAGCTGGT ATTGTATCCT ACTTGAAGAA ACAAGTGGGT CCTGCATCTG CTGAAATCAA 120 GTCGAAGGAA GATGCCACAA ACCTTATTGA TGAGAAAAGT ATCTTTGTTG TAAGTGGTGA 3421 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| GTCGAAGGAA GATGCCACAA ACCTTATTGA TGAGAAAAGT ATCTTTGTT. .......... 169 TACTTTTGAT GTTTTACTTA TCATTACTGA AGTTTATTTT CAGCATGCCA TAGCTTCTTG 3481 .......... .......... .......... .......... .......... .......... 169 CTGTCTAAAA TCTTTCTGTT TCTTTAGGTT GGTATATTTC CAGACCCCTC CGGAGAGAAA 3541 ||| |||||||||| |||||||||| |||||||||| .......... .......... .......GTT GGTATATTTC CAGACCCCTC CGGAGAGAAA 202 TTCGAGAACT ATTTAACGCT AGCTGAAAAA CTGCGAGGCG AGTTCGATTT TGCTCACACT 3601 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCGAGAACT ATTTAACGCT AGCTGAAAAA CTGCGAGGCG AGTTCGATTT TGCTCACACT 262 GTTGATGCTA AACACCTCCC TCGGGGTGGA CCAGTCAACA AGCCCACTCT TCGTCTTCTA 3661 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTGATGCTA AACACCTCCC TCGGGGTGGA CCAGTCAACA AGCCCACTCT TCGTCTTCTA 322 AAGCCATTTG ATGAACTCTT TGTTGATTTT GAGGTATTAC AGTTATCTGT GTATATTTTT 3721 |||||||||| |||||||||| |||||||||| ||| AAGCCATTTG ATGAACTCTT TGTTGATTTT GAG....... .......... .......... 355 ATCTTTGATA CTCATTGTAT TATGGTTATG AGGCTCAACT CTGTCCTATG TTATCTTTTA 3781 .......... .......... .......... .......... .......... .......... 355 ATTGGCCATT GATTGTACAT ACTTGCAGGA CTTTGATGTC GATGCAATGG AGAAGTTCAT 3841 || |||||||||| |||||||||| |||||||||| .......... .......... ........GA CTTTGATGTC GATGCAATGG AGAAGTTCAT 387 CTCAGAATCT AGTATTCCTG TTGTTACTAT TTTTGACAAT GACCCAAACA ACCATCCTTA 3901 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCAGAATCT AGTATTCCTG TTGTTACTAT TTTTGACAAT GACCCAAACA ACCATCCTTA 447 TGTTAACAAG TTCTTCGAAG GCACCAACGC CAAGGTACTT GATTCTGCGA GCTGTAATGC 3961 |||||||||| |||||||||| |||||||||| |||| TGTTAACAAG TTCTTCGAAG GCACCAACGC CAAG...... .......... .......... 481 TTCAATTTGA CCTTATATTT CAACGTCAAG CAATTCTAGG ATCTTCTCAT GAATTTTACA 4021 .......... .......... .......... .......... .......... .......... 481 GTTATATGCT TGTACTTGTA TTATTTTCTT TTCATTCACT AATATTTGAC AATTAACTTC 4081 .......... .......... .......... .......... .......... .......... 481 AAAGTTCTAA GAGATTGATT TGTTTTTTTG ACATTTGCAA ATCTACAGGC ATTGCTATTT 4141 || |||||||||| .......... .......... .......... .......... ........GC ATTGCTATTT 493 GTGAACTTTA GCTCTGAATT TGATGCTTTT AAGTCCAAGT ACAACGATGT TGCTGTGATT 4201 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGAACTTTA GCTCTGAATT TGATGCTTTT AAGTCCAAGT ACAACGATGT TGCTGTGATT 553 TACAAAGGGG ATGGGGTGAG CTTTCTCTTG GGTGATG 4238 |||||| ||| |||||||||| |||||||||| ||||||| TACAAAAGGG ATGGGGTGAG CTTTCTCTTG GGTGATG 590 hqPGS_C06HBa0054K13.1-11+_SGN-E324735+ (3242 3410,3509 3694,3810 3935,4130 4238) ******************************************************************************** EST sequence 42 +strand 676 n (File: SGN-E253799+) 1 AAAGTTCAAG ACTATAACGG TCCTCGTGAA GCAGCTGGTA TTGTATCCTA CTTGAAGAAA 61 CAAGTGGGTC CTGCATCTGC TGAAATCAAG TCGAAGGAAG ATGCCACAAA CCTTATTGAT 121 GAGAAAAGTA TCTTTGTTGT TGGTATATTT CCAGACCCCT CCGGAGAGAA ATTCGAGAAC 181 TATTTAACGC TAGCTGAAAA ACTGCGAGGC GAGTTCGATT TTGCTCACAC TGTTGATGCT 241 AAACACCTCC CTCGGGGTGG ACCAGTCAAC AAGCCCACTC TTCGTCTTCT AAAGCCATTT 301 GATGAACTCT TTGTTGATTT TGAGGACTTT GATGTCGATG CAATGGAGAA GTTCATCTCA 361 GAATCTAGTA TTCCTGTTGT TACTATTTTT GACAATGACC CAAACAACCA TCCTTATGTT 421 AACAAGTTCT TCGAAGGCAC CAACGCCAAG GCATTGCTAT TTGTGAACTT TAGCTCTGAA 481 TTTGATGCTT TTAAGTCCAA GTACAACGAT GTTGCTGTGA TTTACAAAGG GGATGGGGTG 541 AGCTTTCTCT TGGGTGATGT TGAGGCTGGT CAAGGTGCTT TTGAGTACTT CGGACTGAAG 601 CCGGAACAGG CACCTGTGAT CATCATAATG GACGCTGATG AACAAAAGTA TATTAAGGAC 661 CATGTGGAAC CTGATG Predicted gene structure (within gDNA segment 2673 to 4982): Exon 1 3273 3410 ( 138 n); cDNA 1 138 ( 138 n); score: 1.000 Intron 1 3411 3508 ( 98 n); Pd: 0.907 (s: 1.00), Pa: 0.997 (s: 1.00) Exon 2 3509 3694 ( 186 n); cDNA 139 324 ( 186 n); score: 1.000 Intron 2 3695 3809 ( 115 n); Pd: 0.988 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 3 3810 3935 ( 126 n); cDNA 325 450 ( 126 n); score: 1.000 Intron 3 3936 4129 ( 194 n); Pd: 0.981 (s: 1.00), Pa: 0.965 (s: 1.00) Exon 4 4130 4264 ( 135 n); cDNA 451 585 ( 135 n); score: 1.000 Intron 4 4265 4359 ( 95 n); Pd: 0.997 (s: 1.00), Pa: 0.858 (s: 1.00) Exon 5 4360 4450 ( 91 n); cDNA 586 676 ( 91 n); score: 1.000 MATCH C06HBa0054K13.1-11+ SGN-E253799+ 1.000 676 1.000 C PGS_C06HBa0054K13.1-11+_SGN-E253799+ (3273 3410,3509 3694,3810 3935,4130 4264,4360 4450) Alignment (genomic DNA sequence = upper lines): AAAGTTCAAG ACTATAACGG TCCTCGTGAA GCAGCTGGTA TTGTATCCTA CTTGAAGAAA 3332 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAGTTCAAG ACTATAACGG TCCTCGTGAA GCAGCTGGTA TTGTATCCTA CTTGAAGAAA 60 CAAGTGGGTC CTGCATCTGC TGAAATCAAG TCGAAGGAAG ATGCCACAAA CCTTATTGAT 3392 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAGTGGGTC CTGCATCTGC TGAAATCAAG TCGAAGGAAG ATGCCACAAA CCTTATTGAT 120 GAGAAAAGTA TCTTTGTTGT AAGTGGTGAT ACTTTTGATG TTTTACTTAT CATTACTGAA 3452 |||||||||| |||||||| GAGAAAAGTA TCTTTGTT.. .......... .......... .......... .......... 138 GTTTATTTTC AGCATGCCAT AGCTTCTTGC TGTCTAAAAT CTTTCTGTTT CTTTAGGTTG 3512 |||| .......... .......... .......... .......... .......... ......GTTG 142 GTATATTTCC AGACCCCTCC GGAGAGAAAT TCGAGAACTA TTTAACGCTA GCTGAAAAAC 3572 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTATATTTCC AGACCCCTCC GGAGAGAAAT TCGAGAACTA TTTAACGCTA GCTGAAAAAC 202 TGCGAGGCGA GTTCGATTTT GCTCACACTG TTGATGCTAA ACACCTCCCT CGGGGTGGAC 3632 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCGAGGCGA GTTCGATTTT GCTCACACTG TTGATGCTAA ACACCTCCCT CGGGGTGGAC 262 CAGTCAACAA GCCCACTCTT CGTCTTCTAA AGCCATTTGA TGAACTCTTT GTTGATTTTG 3692 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAGTCAACAA GCCCACTCTT CGTCTTCTAA AGCCATTTGA TGAACTCTTT GTTGATTTTG 322 AGGTATTACA GTTATCTGTG TATATTTTTA TCTTTGATAC TCATTGTATT ATGGTTATGA 3752 || AG........ .......... .......... .......... .......... .......... 324 GGCTCAACTC TGTCCTATGT TATCTTTTAA TTGGCCATTG ATTGTACATA CTTGCAGGAC 3812 ||| .......... .......... .......... .......... .......... .......GAC 327 TTTGATGTCG ATGCAATGGA GAAGTTCATC TCAGAATCTA GTATTCCTGT TGTTACTATT 3872 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTGATGTCG ATGCAATGGA GAAGTTCATC TCAGAATCTA GTATTCCTGT TGTTACTATT 387 TTTGACAATG ACCCAAACAA CCATCCTTAT GTTAACAAGT TCTTCGAAGG CACCAACGCC 3932 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTGACAATG ACCCAAACAA CCATCCTTAT GTTAACAAGT TCTTCGAAGG CACCAACGCC 447 AAGGTACTTG ATTCTGCGAG CTGTAATGCT TCAATTTGAC CTTATATTTC AACGTCAAGC 3992 ||| AAG....... .......... .......... .......... .......... .......... 450 AATTCTAGGA TCTTCTCATG AATTTTACAG TTATATGCTT GTACTTGTAT TATTTTCTTT 4052 .......... .......... .......... .......... .......... .......... 450 TCATTCACTA ATATTTGACA ATTAACTTCA AAGTTCTAAG AGATTGATTT GTTTTTTTGA 4112 .......... .......... .......... .......... .......... .......... 450 CATTTGCAAA TCTACAGGCA TTGCTATTTG TGAACTTTAG CTCTGAATTT GATGCTTTTA 4172 ||| |||||||||| |||||||||| |||||||||| |||||||||| .......... .......GCA TTGCTATTTG TGAACTTTAG CTCTGAATTT GATGCTTTTA 493 AGTCCAAGTA CAACGATGTT GCTGTGATTT ACAAAGGGGA TGGGGTGAGC TTTCTCTTGG 4232 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTCCAAGTA CAACGATGTT GCTGTGATTT ACAAAGGGGA TGGGGTGAGC TTTCTCTTGG 553 GTGATGTTGA GGCTGGTCAA GGTGCTTTTG AGGTTGGTTA AAATTTTCAA CTATCTGATT 4292 |||||||||| |||||||||| |||||||||| || GTGATGTTGA GGCTGGTCAA GGTGCTTTTG AG........ .......... .......... 585 ACAGTGTCAT TGTATCCATG ATCACGTAAA AAGGCGCGTT GAACATTCGT TTTATTTGGA 4352 .......... .......... .......... .......... .......... .......... 585 ATTGCAGTAC TTCGGACTGA AGCCGGAACA GGCACCTGTG ATCATCATAA TGGACGCTGA 4412 ||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......TAC TTCGGACTGA AGCCGGAACA GGCACCTGTG ATCATCATAA TGGACGCTGA 638 TGAACAAAAG TATATTAAGG ACCATGTGGA ACCTGATG 4450 |||||||||| |||||||||| |||||||||| |||||||| TGAACAAAAG TATATTAAGG ACCATGTGGA ACCTGATG 676 hqPGS_C06HBa0054K13.1-11+_SGN-E253799+ (3273 3410,3509 3694,3810 3935,4130 4264,4360 4450) ******************************************************************************** EST sequence 18 +strand 640 n (File: SGN-E306540+) 1 AAAGTTCAAG ACTATAACGG TCCTCGTGAA GCAGCTGGTA TTGTATCCTA CTTGAAGAAA 61 CAAGTGGGTC CTGCATCTGC TGAAATCAAG TCGAAGGAAG ATGCCACAAA CCTTATTGAT 121 GAGAAAAGTA TCTTTGTTGT TGGTATATTT CCAGACCCCT CCGGAGAGAA ATTCGAGAAC 181 TATTTAACGC TAGCTGAAAA ACTGCGAGGC GAGTTCGATT TTGCTCACAC TGTTGATGCT 241 AAACACCTCC CTCGGGGTGG ACCAGTCAAC AAGCCCACTC TTCGTCTTCT AAAGCCATTT 301 GATGAACTCT TTGTTGATTT TGAGGACTTT GATGTCGATG CAATGGAGAA GTTCATCTCA 361 GAATCTAGTA TTCCTGTTGT TACTATTTTT GACAATGACC CAAACAACCA TCCTTATGTT 421 AACAAGTTCT TCGAAGGCAC CAACGCCAAG GCATTGCTAT TTGTGAACTT TAGCTCTGAA 481 TTTGATGCTT TTAAGTCCAA GTACAACGAT GTTGCTGTGA TTTACAAAGG GGATGGGGTG 541 AGCTTTCTCT TGGGTGATGT TGAGGCTGGT CAAAGTGCTT TTGAGTACTT CGGACTGAAG 601 CCGGAACAGG CACCTGTGAT CATCATAATG GACGCTGATG Predicted gene structure (within gDNA segment 2673 to 4982): Exon 1 3273 3410 ( 138 n); cDNA 1 138 ( 138 n); score: 1.000 Intron 1 3411 3508 ( 98 n); Pd: 0.907 (s: 1.00), Pa: 0.997 (s: 1.00) Exon 2 3509 3694 ( 186 n); cDNA 139 324 ( 186 n); score: 1.000 Intron 2 3695 3809 ( 115 n); Pd: 0.988 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 3 3810 3935 ( 126 n); cDNA 325 450 ( 126 n); score: 1.000 Intron 3 3936 4129 ( 194 n); Pd: 0.981 (s: 1.00), Pa: 0.965 (s: 1.00) Exon 4 4130 4264 ( 135 n); cDNA 451 585 ( 135 n); score: 0.993 Intron 4 4265 4359 ( 95 n); Pd: 0.997 (s: 0.98), Pa: 0.858 (s: 1.00) Exon 5 4360 4414 ( 55 n); cDNA 586 640 ( 55 n); score: 1.000 MATCH C06HBa0054K13.1-11+ SGN-E306540+ 0.998 640 1.000 C PGS_C06HBa0054K13.1-11+_SGN-E306540+ (3273 3410,3509 3694,3810 3935,4130 4264,4360 4414) Alignment (genomic DNA sequence = upper lines): AAAGTTCAAG ACTATAACGG TCCTCGTGAA GCAGCTGGTA TTGTATCCTA CTTGAAGAAA 3332 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAGTTCAAG ACTATAACGG TCCTCGTGAA GCAGCTGGTA TTGTATCCTA CTTGAAGAAA 60 CAAGTGGGTC CTGCATCTGC TGAAATCAAG TCGAAGGAAG ATGCCACAAA CCTTATTGAT 3392 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAGTGGGTC CTGCATCTGC TGAAATCAAG TCGAAGGAAG ATGCCACAAA CCTTATTGAT 120 GAGAAAAGTA TCTTTGTTGT AAGTGGTGAT ACTTTTGATG TTTTACTTAT CATTACTGAA 3452 |||||||||| |||||||| GAGAAAAGTA TCTTTGTT.. .......... .......... .......... .......... 138 GTTTATTTTC AGCATGCCAT AGCTTCTTGC TGTCTAAAAT CTTTCTGTTT CTTTAGGTTG 3512 |||| .......... .......... .......... .......... .......... ......GTTG 142 GTATATTTCC AGACCCCTCC GGAGAGAAAT TCGAGAACTA TTTAACGCTA GCTGAAAAAC 3572 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTATATTTCC AGACCCCTCC GGAGAGAAAT TCGAGAACTA TTTAACGCTA GCTGAAAAAC 202 TGCGAGGCGA GTTCGATTTT GCTCACACTG TTGATGCTAA ACACCTCCCT CGGGGTGGAC 3632 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCGAGGCGA GTTCGATTTT GCTCACACTG TTGATGCTAA ACACCTCCCT CGGGGTGGAC 262 CAGTCAACAA GCCCACTCTT CGTCTTCTAA AGCCATTTGA TGAACTCTTT GTTGATTTTG 3692 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAGTCAACAA GCCCACTCTT CGTCTTCTAA AGCCATTTGA TGAACTCTTT GTTGATTTTG 322 AGGTATTACA GTTATCTGTG TATATTTTTA TCTTTGATAC TCATTGTATT ATGGTTATGA 3752 || AG........ .......... .......... .......... .......... .......... 324 GGCTCAACTC TGTCCTATGT TATCTTTTAA TTGGCCATTG ATTGTACATA CTTGCAGGAC 3812 ||| .......... .......... .......... .......... .......... .......GAC 327 TTTGATGTCG ATGCAATGGA GAAGTTCATC TCAGAATCTA GTATTCCTGT TGTTACTATT 3872 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTGATGTCG ATGCAATGGA GAAGTTCATC TCAGAATCTA GTATTCCTGT TGTTACTATT 387 TTTGACAATG ACCCAAACAA CCATCCTTAT GTTAACAAGT TCTTCGAAGG CACCAACGCC 3932 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTGACAATG ACCCAAACAA CCATCCTTAT GTTAACAAGT TCTTCGAAGG CACCAACGCC 447 AAGGTACTTG ATTCTGCGAG CTGTAATGCT TCAATTTGAC CTTATATTTC AACGTCAAGC 3992 ||| AAG....... .......... .......... .......... .......... .......... 450 AATTCTAGGA TCTTCTCATG AATTTTACAG TTATATGCTT GTACTTGTAT TATTTTCTTT 4052 .......... .......... .......... .......... .......... .......... 450 TCATTCACTA ATATTTGACA ATTAACTTCA AAGTTCTAAG AGATTGATTT GTTTTTTTGA 4112 .......... .......... .......... .......... .......... .......... 450 CATTTGCAAA TCTACAGGCA TTGCTATTTG TGAACTTTAG CTCTGAATTT GATGCTTTTA 4172 ||| |||||||||| |||||||||| |||||||||| |||||||||| .......... .......GCA TTGCTATTTG TGAACTTTAG CTCTGAATTT GATGCTTTTA 493 AGTCCAAGTA CAACGATGTT GCTGTGATTT ACAAAGGGGA TGGGGTGAGC TTTCTCTTGG 4232 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTCCAAGTA CAACGATGTT GCTGTGATTT ACAAAGGGGA TGGGGTGAGC TTTCTCTTGG 553 GTGATGTTGA GGCTGGTCAA GGTGCTTTTG AGGTTGGTTA AAATTTTCAA CTATCTGATT 4292 |||||||||| |||||||||| ||||||||| || GTGATGTTGA GGCTGGTCAA AGTGCTTTTG AG........ .......... .......... 585 ACAGTGTCAT TGTATCCATG ATCACGTAAA AAGGCGCGTT GAACATTCGT TTTATTTGGA 4352 .......... .......... .......... .......... .......... .......... 585 ATTGCAGTAC TTCGGACTGA AGCCGGAACA GGCACCTGTG ATCATCATAA TGGACGCTGA 4412 ||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......TAC TTCGGACTGA AGCCGGAACA GGCACCTGTG ATCATCATAA TGGACGCTGA 638 TG 4414 || TG 640 hqPGS_C06HBa0054K13.1-11+_SGN-E306540+ (3273 3410,3509 3694,3810 3935,4130 4264,4360 4414) ******************************************************************************** EST sequence 15 +strand 688 n (File: SGN-E211099+) 1 TCAAGACTAT AACGGTCCTC GTGAAGCAGC TGGTATTGTA TCCTACTTGA AGAAACAAGT 61 GGGTCCTGCA TCTGCTGAAA TCAAGTCGAA GGAAGATGCC ACAAACCTTA TTGATGAGAA 121 AAGTATCTTT GTTGTTGGTA TATTTCCAGA CCCCTCCGGA GAGAAATTCG AGAACTATTT 181 AACGCTAGCT GAAAAACTGC GAGGCGAGTT CGATTTTGCT CACACTGTTG ATGCTAAACA 241 CCTCCCTCGG GGTGGACCAG TCAACAAGCC CACTCTTCGT CTTCTAAAGC CATTTGATGA 301 ACTCTTTGTT GATTTTGAGG ACTTTGATGT CGATGCAATG GAGAAGTTCA TCTCAGAATC 361 TAGTATTCCT GTTGTTACTA TTTTTGACAA TGACCCAAAC AACCATCCTT ATGTTAACAA 421 GTTCTTCGAA GGCACCAACG CCAAGGCATT GCTATTTGTG AACTTTAGCT CTGAATTTGA 481 TGCTTTTAAG TCCAAGTACA ACGATGTTGC TGTGATTTAC AAAGGGGATG GGGTGAGCTT 541 TCTCTTGGGT GATGTTGAGG CTGGTCAAGG TGCTTTTGAG TACTTCGGAC TGAAGCCGGA 601 ACAGGCACCT GTGATCATCA TAATGGACGC TGATGAACAA AAGTATATTA AGGACCATGT 661 GGAACCTGAT GCCATTGCTG CTTACTTT Predicted gene structure (within gDNA segment 2678 to 4982): Exon 1 3278 3410 ( 133 n); cDNA 1 133 ( 133 n); score: 1.000 Intron 1 3411 3508 ( 98 n); Pd: 0.907 (s: 1.00), Pa: 0.997 (s: 1.00) Exon 2 3509 3694 ( 186 n); cDNA 134 319 ( 186 n); score: 1.000 Intron 2 3695 3809 ( 115 n); Pd: 0.988 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 3 3810 3935 ( 126 n); cDNA 320 445 ( 126 n); score: 1.000 Intron 3 3936 4129 ( 194 n); Pd: 0.981 (s: 1.00), Pa: 0.965 (s: 1.00) Exon 4 4130 4264 ( 135 n); cDNA 446 580 ( 135 n); score: 1.000 Intron 4 4265 4359 ( 95 n); Pd: 0.997 (s: 1.00), Pa: 0.858 (s: 1.00) Exon 5 4360 4466 ( 107 n); cDNA 581 687 ( 107 n); score: 1.000 MATCH C06HBa0054K13.1-11+ SGN-E211099+ 1.000 687 0.999 C PGS_C06HBa0054K13.1-11+_SGN-E211099+ (3278 3410,3509 3694,3810 3935,4130 4264,4360 4466) Alignment (genomic DNA sequence = upper lines): TCAAGACTAT AACGGTCCTC GTGAAGCAGC TGGTATTGTA TCCTACTTGA AGAAACAAGT 3337 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCAAGACTAT AACGGTCCTC GTGAAGCAGC TGGTATTGTA TCCTACTTGA AGAAACAAGT 60 GGGTCCTGCA TCTGCTGAAA TCAAGTCGAA GGAAGATGCC ACAAACCTTA TTGATGAGAA 3397 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGGTCCTGCA TCTGCTGAAA TCAAGTCGAA GGAAGATGCC ACAAACCTTA TTGATGAGAA 120 AAGTATCTTT GTTGTAAGTG GTGATACTTT TGATGTTTTA CTTATCATTA CTGAAGTTTA 3457 |||||||||| ||| AAGTATCTTT GTT....... .......... .......... .......... .......... 133 TTTTCAGCAT GCCATAGCTT CTTGCTGTCT AAAATCTTTC TGTTTCTTTA GGTTGGTATA 3517 ||||||||| .......... .......... .......... .......... .......... .GTTGGTATA 142 TTTCCAGACC CCTCCGGAGA GAAATTCGAG AACTATTTAA CGCTAGCTGA AAAACTGCGA 3577 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTCCAGACC CCTCCGGAGA GAAATTCGAG AACTATTTAA CGCTAGCTGA AAAACTGCGA 202 GGCGAGTTCG ATTTTGCTCA CACTGTTGAT GCTAAACACC TCCCTCGGGG TGGACCAGTC 3637 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGCGAGTTCG ATTTTGCTCA CACTGTTGAT GCTAAACACC TCCCTCGGGG TGGACCAGTC 262 AACAAGCCCA CTCTTCGTCT TCTAAAGCCA TTTGATGAAC TCTTTGTTGA TTTTGAGGTA 3697 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||| AACAAGCCCA CTCTTCGTCT TCTAAAGCCA TTTGATGAAC TCTTTGTTGA TTTTGAG... 319 TTACAGTTAT CTGTGTATAT TTTTATCTTT GATACTCATT GTATTATGGT TATGAGGCTC 3757 .......... .......... .......... .......... .......... .......... 319 AACTCTGTCC TATGTTATCT TTTAATTGGC CATTGATTGT ACATACTTGC AGGACTTTGA 3817 |||||||| .......... .......... .......... .......... .......... ..GACTTTGA 327 TGTCGATGCA ATGGAGAAGT TCATCTCAGA ATCTAGTATT CCTGTTGTTA CTATTTTTGA 3877 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTCGATGCA ATGGAGAAGT TCATCTCAGA ATCTAGTATT CCTGTTGTTA CTATTTTTGA 387 CAATGACCCA AACAACCATC CTTATGTTAA CAAGTTCTTC GAAGGCACCA ACGCCAAGGT 3937 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||| CAATGACCCA AACAACCATC CTTATGTTAA CAAGTTCTTC GAAGGCACCA ACGCCAAG.. 445 ACTTGATTCT GCGAGCTGTA ATGCTTCAAT TTGACCTTAT ATTTCAACGT CAAGCAATTC 3997 .......... .......... .......... .......... .......... .......... 445 TAGGATCTTC TCATGAATTT TACAGTTATA TGCTTGTACT TGTATTATTT TCTTTTCATT 4057 .......... .......... .......... .......... .......... .......... 445 CACTAATATT TGACAATTAA CTTCAAAGTT CTAAGAGATT GATTTGTTTT TTTGACATTT 4117 .......... .......... .......... .......... .......... .......... 445 GCAAATCTAC AGGCATTGCT ATTTGTGAAC TTTAGCTCTG AATTTGATGC TTTTAAGTCC 4177 |||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ..GCATTGCT ATTTGTGAAC TTTAGCTCTG AATTTGATGC TTTTAAGTCC 493 AAGTACAACG ATGTTGCTGT GATTTACAAA GGGGATGGGG TGAGCTTTCT CTTGGGTGAT 4237 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGTACAACG ATGTTGCTGT GATTTACAAA GGGGATGGGG TGAGCTTTCT CTTGGGTGAT 553 GTTGAGGCTG GTCAAGGTGC TTTTGAGGTT GGTTAAAATT TTCAACTATC TGATTACAGT 4297 |||||||||| |||||||||| ||||||| GTTGAGGCTG GTCAAGGTGC TTTTGAG... .......... .......... .......... 580 GTCATTGTAT CCATGATCAC GTAAAAAGGC GCGTTGAACA TTCGTTTTAT TTGGAATTGC 4357 .......... .......... .......... .......... .......... .......... 580 AGTACTTCGG ACTGAAGCCG GAACAGGCAC CTGTGATCAT CATAATGGAC GCTGATGAAC 4417 |||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ..TACTTCGG ACTGAAGCCG GAACAGGCAC CTGTGATCAT CATAATGGAC GCTGATGAAC 638 AAAAGTATAT TAAGGACCAT GTGGAACCTG ATGCCATTGC TGCTTACTT 4466 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| AAAAGTATAT TAAGGACCAT GTGGAACCTG ATGCCATTGC TGCTTACTT 687 hqPGS_C06HBa0054K13.1-11+_SGN-E211099+ (3278 3410,3509 3694,3810 3935,4130 4264,4360 4466) ******************************************************************************** EST sequence 110 +strand 697 n (File: SGN-E323281+) 1 AAGTGGGTCC TGCATCTGCT GAAATCAAGT CGAAGGAAGA TGCCACAAAC CTTATTGATG 61 AGAAAAGTAT CTTTGTTGTT GGTATATTTC CAGACCCCTC CGGAGAGAAA TTCGAGAACT 121 ATTTAACGCT AGCTGAAAAA CTGCGAGGCG AGTTCGATTT TGCTCACACT GTTGATGCTA 181 AACACCTCCC TCGGGGTGGA CCAGTCAACA AGCCCACTCT TCGTCTTCTA AAGCCATTTG 241 ATGAACTCTT TGTTGATTTT GAGGACTTTG ATGTCGATGC AATGGAGAAG TTCATCTCAG 301 AATCTAGTAT TCCTGTTGTT ACTATTTTTG ACAATGACCC AAACAACCAT CCTTATGTTA 361 ACAAGTTCTT CGAAGGCACC AACGCCAAGG CATTGCTATT TGTGAACTTT AGCTCTGAAT 421 TTGATGCTTT TAAGTCCAAG TACAACGATG TTGCTGTGAT TTACAAAGGG GATGGGGTGA 481 GCTTTCTCTT GGGTGATGTT GAGGCTGGTC AAGGTGCTTT TGAGTACTTC GGACTGAAGC 541 CGGAACAGGC ACCTGTGATC ATCATAATGG ACGCTGATGA ACAAAAGTAT ATTAAGGACC 601 ATGTGGAACC TGATGCCATT GCTGCTTACT TGAAGGATTA CAAGGAAGGA AAACTGAAGC 661 CACATGTGAA GTCAGAGCCC ATCCCTGAAA GTCATGA Predicted gene structure (within gDNA segment 2734 to 4982): Exon 1 3334 3410 ( 77 n); cDNA 1 77 ( 77 n); score: 1.000 Intron 1 3411 3508 ( 98 n); Pd: 0.907 (s: 1.00), Pa: 0.997 (s: 1.00) Exon 2 3509 3694 ( 186 n); cDNA 78 263 ( 186 n); score: 1.000 Intron 2 3695 3809 ( 115 n); Pd: 0.988 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 3 3810 3935 ( 126 n); cDNA 264 389 ( 126 n); score: 1.000 Intron 3 3936 4129 ( 194 n); Pd: 0.981 (s: 1.00), Pa: 0.965 (s: 1.00) Exon 4 4130 4264 ( 135 n); cDNA 390 524 ( 135 n); score: 1.000 Intron 4 4265 4359 ( 95 n); Pd: 0.997 (s: 1.00), Pa: 0.858 (s: 1.00) Exon 5 4360 4479 ( 120 n); cDNA 525 644 ( 120 n); score: 1.000 Intron 5 4480 4604 ( 125 n); Pd: 1.000 (s: 1.00), Pa: 0.984 (s: 0.92) Exon 6 4605 4657 ( 53 n); cDNA 645 697 ( 53 n); score: 0.925 MATCH C06HBa0054K13.1-11+ SGN-E323281+ 0.994 697 1.000 C PGS_C06HBa0054K13.1-11+_SGN-E323281+ (3334 3410,3509 3694,3810 3935,4130 4264,4360 4479,4605 4657) Alignment (genomic DNA sequence = upper lines): AAGTGGGTCC TGCATCTGCT GAAATCAAGT CGAAGGAAGA TGCCACAAAC CTTATTGATG 3393 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGTGGGTCC TGCATCTGCT GAAATCAAGT CGAAGGAAGA TGCCACAAAC CTTATTGATG 60 AGAAAAGTAT CTTTGTTGTA AGTGGTGATA CTTTTGATGT TTTACTTATC ATTACTGAAG 3453 |||||||||| ||||||| AGAAAAGTAT CTTTGTT... .......... .......... .......... .......... 77 TTTATTTTCA GCATGCCATA GCTTCTTGCT GTCTAAAATC TTTCTGTTTC TTTAGGTTGG 3513 ||||| .......... .......... .......... .......... .......... .....GTTGG 82 TATATTTCCA GACCCCTCCG GAGAGAAATT CGAGAACTAT TTAACGCTAG CTGAAAAACT 3573 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATATTTCCA GACCCCTCCG GAGAGAAATT CGAGAACTAT TTAACGCTAG CTGAAAAACT 142 GCGAGGCGAG TTCGATTTTG CTCACACTGT TGATGCTAAA CACCTCCCTC GGGGTGGACC 3633 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCGAGGCGAG TTCGATTTTG CTCACACTGT TGATGCTAAA CACCTCCCTC GGGGTGGACC 202 AGTCAACAAG CCCACTCTTC GTCTTCTAAA GCCATTTGAT GAACTCTTTG TTGATTTTGA 3693 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTCAACAAG CCCACTCTTC GTCTTCTAAA GCCATTTGAT GAACTCTTTG TTGATTTTGA 262 GGTATTACAG TTATCTGTGT ATATTTTTAT CTTTGATACT CATTGTATTA TGGTTATGAG 3753 | G......... .......... .......... .......... .......... .......... 263 GCTCAACTCT GTCCTATGTT ATCTTTTAAT TGGCCATTGA TTGTACATAC TTGCAGGACT 3813 |||| .......... .......... .......... .......... .......... ......GACT 267 TTGATGTCGA TGCAATGGAG AAGTTCATCT CAGAATCTAG TATTCCTGTT GTTACTATTT 3873 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGATGTCGA TGCAATGGAG AAGTTCATCT CAGAATCTAG TATTCCTGTT GTTACTATTT 327 TTGACAATGA CCCAAACAAC CATCCTTATG TTAACAAGTT CTTCGAAGGC ACCAACGCCA 3933 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGACAATGA CCCAAACAAC CATCCTTATG TTAACAAGTT CTTCGAAGGC ACCAACGCCA 387 AGGTACTTGA TTCTGCGAGC TGTAATGCTT CAATTTGACC TTATATTTCA ACGTCAAGCA 3993 || AG........ .......... .......... .......... .......... .......... 389 ATTCTAGGAT CTTCTCATGA ATTTTACAGT TATATGCTTG TACTTGTATT ATTTTCTTTT 4053 .......... .......... .......... .......... .......... .......... 389 CATTCACTAA TATTTGACAA TTAACTTCAA AGTTCTAAGA GATTGATTTG TTTTTTTGAC 4113 .......... .......... .......... .......... .......... .......... 389 ATTTGCAAAT CTACAGGCAT TGCTATTTGT GAACTTTAGC TCTGAATTTG ATGCTTTTAA 4173 |||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ......GCAT TGCTATTTGT GAACTTTAGC TCTGAATTTG ATGCTTTTAA 433 GTCCAAGTAC AACGATGTTG CTGTGATTTA CAAAGGGGAT GGGGTGAGCT TTCTCTTGGG 4233 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTCCAAGTAC AACGATGTTG CTGTGATTTA CAAAGGGGAT GGGGTGAGCT TTCTCTTGGG 493 TGATGTTGAG GCTGGTCAAG GTGCTTTTGA GGTTGGTTAA AATTTTCAAC TATCTGATTA 4293 |||||||||| |||||||||| |||||||||| | TGATGTTGAG GCTGGTCAAG GTGCTTTTGA G......... .......... .......... 524 CAGTGTCATT GTATCCATGA TCACGTAAAA AGGCGCGTTG AACATTCGTT TTATTTGGAA 4353 .......... .......... .......... .......... .......... .......... 524 TTGCAGTACT TCGGACTGAA GCCGGAACAG GCACCTGTGA TCATCATAAT GGACGCTGAT 4413 |||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ......TACT TCGGACTGAA GCCGGAACAG GCACCTGTGA TCATCATAAT GGACGCTGAT 578 GAACAAAAGT ATATTAAGGA CCATGTGGAA CCTGATGCCA TTGCTGCTTA CTTGAAGGAT 4473 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAACAAAAGT ATATTAAGGA CCATGTGGAA CCTGATGCCA TTGCTGCTTA CTTGAAGGAT 638 TACAAGGTGA TGCATCCTCT TCTTTTTCTT GGATATATTT TGGAATGAAA GCGTTGTTAA 4533 |||||| TACAAG.... .......... .......... .......... .......... .......... 644 TTGTGAACAA TATTCTGCAC GGAAGGAAAG GCTTACTAAC CTTTTTCCTC TAATTTTCCA 4593 .......... .......... .......... .......... .......... .......... 644 CATTGTTACA GGAAGGAAAA CTGAAGCCAC ATGTGAAGTC AGAGCCCATC CCTGAAGTCA 4653 ||||||||| |||||||||| |||||||||| |||||||||| |||||| .......... .GAAGGAAAA CTGAAGCCAC ATGTGAAGTC AGAGCCCATC CCTGAAAGTC 693 ATGA 4657 |||| ATGA 697 hqPGS_C06HBa0054K13.1-11+_SGN-E323281+ (3334 3410,3509 3694,3810 3935,4130 4264,4360 4479,4605 4657) ******************************************************************************** EST sequence 59 +strand 566 n (File: SGN-E214809+) 1 TCTGCTGAAA TCAAGTCGAA GGAAGATGCC ACAAACCTTA TTGATGAGAA AAGTATCTTT 61 GTTGTTGGTA TATTTCCAGA CCCCTCCGGA GAGAAATTCG AGAACTATTT AACGCTAGCT 121 GAAAAACTGC GAGGCGAGTT CGATTTTGCT CACACTGTTG ATGCTAAACA CCTCCCTCGG 181 GGTGGACCAG TCAACAAGCC CACTCTTCGT CTTCTAAAGC CATTTGATGA ACTCTTTGTT 241 GATTTTGAGG ACTTTGATGT CGATGCAATG GAGAAGTTCA TCTCAGAATC TAGTATTCCT 301 GTTGTTACTA TTTTTGACAA TGACCCAAAC AACCATCCTT ATGTTAACAA GTTCTTCGAA 361 GGCACCAACG CCAAGGCATT GCTATTTGTG AACTTTAGCT CTGAATTTGA TGCTTTTAAG 421 TCCAAGTACA ACGATGTTGC TGTGATTTAC AAAGGGGATG GGGTGAGCTT TCTCTTGGGT 481 GATGTTGAGG CTGGTCAAGG TGCTTTTGAG TACTTCNGAC TGAAGCCGGA ACAGGCACCT 541 GTGATCATCA TAATGGACGC TGATGA Predicted gene structure (within gDNA segment 2748 to 4982): Exon 1 3348 3410 ( 63 n); cDNA 1 63 ( 63 n); score: 1.000 Intron 1 3411 3508 ( 98 n); Pd: 0.907 (s: 1.00), Pa: 0.997 (s: 1.00) Exon 2 3509 3694 ( 186 n); cDNA 64 249 ( 186 n); score: 1.000 Intron 2 3695 3809 ( 115 n); Pd: 0.988 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 3 3810 3935 ( 126 n); cDNA 250 375 ( 126 n); score: 1.000 Intron 3 3936 4129 ( 194 n); Pd: 0.981 (s: 1.00), Pa: 0.965 (s: 1.00) Exon 4 4130 4264 ( 135 n); cDNA 376 510 ( 135 n); score: 1.000 Intron 4 4265 4359 ( 95 n); Pd: 0.997 (s: 1.00), Pa: 0.858 (s: 0.98) Exon 5 4360 4415 ( 56 n); cDNA 511 566 ( 56 n); score: 0.982 MATCH C06HBa0054K13.1-11+ SGN-E214809+ 0.998 566 1.000 C PGS_C06HBa0054K13.1-11+_SGN-E214809+ (3348 3410,3509 3694,3810 3935,4130 4264,4360 4415) Alignment (genomic DNA sequence = upper lines): TCTGCTGAAA TCAAGTCGAA GGAAGATGCC ACAAACCTTA TTGATGAGAA AAGTATCTTT 3407 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTGCTGAAA TCAAGTCGAA GGAAGATGCC ACAAACCTTA TTGATGAGAA AAGTATCTTT 60 GTTGTAAGTG GTGATACTTT TGATGTTTTA CTTATCATTA CTGAAGTTTA TTTTCAGCAT 3467 ||| GTT....... .......... .......... .......... .......... .......... 63 GCCATAGCTT CTTGCTGTCT AAAATCTTTC TGTTTCTTTA GGTTGGTATA TTTCCAGACC 3527 ||||||||| |||||||||| .......... .......... .......... .......... .GTTGGTATA TTTCCAGACC 82 CCTCCGGAGA GAAATTCGAG AACTATTTAA CGCTAGCTGA AAAACTGCGA GGCGAGTTCG 3587 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCTCCGGAGA GAAATTCGAG AACTATTTAA CGCTAGCTGA AAAACTGCGA GGCGAGTTCG 142 ATTTTGCTCA CACTGTTGAT GCTAAACACC TCCCTCGGGG TGGACCAGTC AACAAGCCCA 3647 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTTTGCTCA CACTGTTGAT GCTAAACACC TCCCTCGGGG TGGACCAGTC AACAAGCCCA 202 CTCTTCGTCT TCTAAAGCCA TTTGATGAAC TCTTTGTTGA TTTTGAGGTA TTACAGTTAT 3707 |||||||||| |||||||||| |||||||||| |||||||||| ||||||| CTCTTCGTCT TCTAAAGCCA TTTGATGAAC TCTTTGTTGA TTTTGAG... .......... 249 CTGTGTATAT TTTTATCTTT GATACTCATT GTATTATGGT TATGAGGCTC AACTCTGTCC 3767 .......... .......... .......... .......... .......... .......... 249 TATGTTATCT TTTAATTGGC CATTGATTGT ACATACTTGC AGGACTTTGA TGTCGATGCA 3827 |||||||| |||||||||| .......... .......... .......... .......... ..GACTTTGA TGTCGATGCA 267 ATGGAGAAGT TCATCTCAGA ATCTAGTATT CCTGTTGTTA CTATTTTTGA CAATGACCCA 3887 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGGAGAAGT TCATCTCAGA ATCTAGTATT CCTGTTGTTA CTATTTTTGA CAATGACCCA 327 AACAACCATC CTTATGTTAA CAAGTTCTTC GAAGGCACCA ACGCCAAGGT ACTTGATTCT 3947 |||||||||| |||||||||| |||||||||| |||||||||| |||||||| AACAACCATC CTTATGTTAA CAAGTTCTTC GAAGGCACCA ACGCCAAG.. .......... 375 GCGAGCTGTA ATGCTTCAAT TTGACCTTAT ATTTCAACGT CAAGCAATTC TAGGATCTTC 4007 .......... .......... .......... .......... .......... .......... 375 TCATGAATTT TACAGTTATA TGCTTGTACT TGTATTATTT TCTTTTCATT CACTAATATT 4067 .......... .......... .......... .......... .......... .......... 375 TGACAATTAA CTTCAAAGTT CTAAGAGATT GATTTGTTTT TTTGACATTT GCAAATCTAC 4127 .......... .......... .......... .......... .......... .......... 375 AGGCATTGCT ATTTGTGAAC TTTAGCTCTG AATTTGATGC TTTTAAGTCC AAGTACAACG 4187 |||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ..GCATTGCT ATTTGTGAAC TTTAGCTCTG AATTTGATGC TTTTAAGTCC AAGTACAACG 433 ATGTTGCTGT GATTTACAAA GGGGATGGGG TGAGCTTTCT CTTGGGTGAT GTTGAGGCTG 4247 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGTTGCTGT GATTTACAAA GGGGATGGGG TGAGCTTTCT CTTGGGTGAT GTTGAGGCTG 493 GTCAAGGTGC TTTTGAGGTT GGTTAAAATT TTCAACTATC TGATTACAGT GTCATTGTAT 4307 |||||||||| ||||||| GTCAAGGTGC TTTTGAG... .......... .......... .......... .......... 510 CCATGATCAC GTAAAAAGGC GCGTTGAACA TTCGTTTTAT TTGGAATTGC AGTACTTCGG 4367 |||||| | .......... .......... .......... .......... .......... ..TACTTCNG 518 ACTGAAGCCG GAACAGGCAC CTGTGATCAT CATAATGGAC GCTGATGA 4415 |||||||||| |||||||||| |||||||||| |||||||||| |||||||| ACTGAAGCCG GAACAGGCAC CTGTGATCAT CATAATGGAC GCTGATGA 566 hqPGS_C06HBa0054K13.1-11+_SGN-E214809+ (3348 3410,3509 3694,3810 3935,4130 4264,4360 4415) ******************************************************************************** EST sequence 97 +strand 622 n (File: SGN-E320450+) 1 CTGAAATCAA GTCGAAGGAA GATGCCACAA ACCTTATTGA TGAGAAAAGT ATCTTTGTTG 61 TTGGTATATT TCCAGACCCC TCCGGAGAGA AATTCGAGAA CTATTTAACG CTAGCTGAAA 121 AACTGCGAGG CGAGTTCGAT TTTGCTCACA CTGGTGATGC TAAACACCTC CCTCGGGGTG 181 GACCAGTCAA CAAGCCCACT CTTCGTCTTC TAAAGCCATT TGATGAACTC TTTGTTGATT 241 TTGAGGACTT TGATGTCGAT GCAATGGAGA AGTTCATCTC AGAATCTAGT ATTCCTGTTG 301 TTACTATTTT TGAGAATGAC CCAAACAACC ATCCTTATGT TAACAAGTTC TTCGAAGGCA 361 CCAACGCGAA GGCATTGCTA TTTGTGAACT TTAGCTCTGA ATTTGATGCT TTTAAGTCCA 421 AGTACAACGA TGTTGCTGTG ATTTACGAAG GGGATGGGGT GAGCTTTCTC TTGAGTGATG 481 TTGAGGCTGG TCAAGGTGCT TTTGAGTACT TCGGACTGAA GCCGGAACAC GCACCTGTGA 541 TCATCATAAT GGACGCTGAT GAACAAAAGT ATATTAACGA CCGTGTGGAG CCTGATGCCA 601 TTGCTGCTTA CTTGAAGGAT TG Predicted gene structure (within gDNA segment 2752 to 4982): Exon 1 3352 3410 ( 59 n); cDNA 1 59 ( 59 n); score: 1.000 Intron 1 3411 3508 ( 98 n); Pd: 0.907 (s: 1.00), Pa: 0.997 (s: 1.00) Exon 2 3509 3694 ( 186 n); cDNA 60 245 ( 186 n); score: 0.995 Intron 2 3695 3809 ( 115 n); Pd: 0.988 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 3 3810 3935 ( 126 n); cDNA 246 371 ( 126 n); score: 0.984 Intron 3 3936 4129 ( 194 n); Pd: 0.981 (s: 0.98), Pa: 0.965 (s: 1.00) Exon 4 4130 4264 ( 135 n); cDNA 372 506 ( 135 n); score: 0.985 Intron 4 4265 4359 ( 95 n); Pd: 0.997 (s: 0.98), Pa: 0.858 (s: 0.98) Exon 5 4360 4474 ( 115 n); cDNA 507 621 ( 115 n); score: 0.965 MATCH C06HBa0054K13.1-11+ SGN-E320450+ 0.986 621 0.998 C PGS_C06HBa0054K13.1-11+_SGN-E320450+ (3352 3410,3509 3694,3810 3935,4130 4264,4360 4474) Alignment (genomic DNA sequence = upper lines): CTGAAATCAA GTCGAAGGAA GATGCCACAA ACCTTATTGA TGAGAAAAGT ATCTTTGTTG 3411 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| CTGAAATCAA GTCGAAGGAA GATGCCACAA ACCTTATTGA TGAGAAAAGT ATCTTTGTT. 59 TAAGTGGTGA TACTTTTGAT GTTTTACTTA TCATTACTGA AGTTTATTTT CAGCATGCCA 3471 .......... .......... .......... .......... .......... .......... 59 TAGCTTCTTG CTGTCTAAAA TCTTTCTGTT TCTTTAGGTT GGTATATTTC CAGACCCCTC 3531 ||| |||||||||| |||||||||| .......... .......... .......... .......GTT GGTATATTTC CAGACCCCTC 82 CGGAGAGAAA TTCGAGAACT ATTTAACGCT AGCTGAAAAA CTGCGAGGCG AGTTCGATTT 3591 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGGAGAGAAA TTCGAGAACT ATTTAACGCT AGCTGAAAAA CTGCGAGGCG AGTTCGATTT 142 TGCTCACACT GTTGATGCTA AACACCTCCC TCGGGGTGGA CCAGTCAACA AGCCCACTCT 3651 |||||||||| | |||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCTCACACT GGTGATGCTA AACACCTCCC TCGGGGTGGA CCAGTCAACA AGCCCACTCT 202 TCGTCTTCTA AAGCCATTTG ATGAACTCTT TGTTGATTTT GAGGTATTAC AGTTATCTGT 3711 |||||||||| |||||||||| |||||||||| |||||||||| ||| TCGTCTTCTA AAGCCATTTG ATGAACTCTT TGTTGATTTT GAG....... .......... 245 GTATATTTTT ATCTTTGATA CTCATTGTAT TATGGTTATG AGGCTCAACT CTGTCCTATG 3771 .......... .......... .......... .......... .......... .......... 245 TTATCTTTTA ATTGGCCATT GATTGTACAT ACTTGCAGGA CTTTGATGTC GATGCAATGG 3831 || |||||||||| |||||||||| .......... .......... .......... ........GA CTTTGATGTC GATGCAATGG 267 AGAAGTTCAT CTCAGAATCT AGTATTCCTG TTGTTACTAT TTTTGACAAT GACCCAAACA 3891 |||||||||| |||||||||| |||||||||| |||||||||| |||||| ||| |||||||||| AGAAGTTCAT CTCAGAATCT AGTATTCCTG TTGTTACTAT TTTTGAGAAT GACCCAAACA 327 ACCATCCTTA TGTTAACAAG TTCTTCGAAG GCACCAACGC CAAGGTACTT GATTCTGCGA 3951 |||||||||| |||||||||| |||||||||| |||||||||| ||| ACCATCCTTA TGTTAACAAG TTCTTCGAAG GCACCAACGC GAAG...... .......... 371 GCTGTAATGC TTCAATTTGA CCTTATATTT CAACGTCAAG CAATTCTAGG ATCTTCTCAT 4011 .......... .......... .......... .......... .......... .......... 371 GAATTTTACA GTTATATGCT TGTACTTGTA TTATTTTCTT TTCATTCACT AATATTTGAC 4071 .......... .......... .......... .......... .......... .......... 371 AATTAACTTC AAAGTTCTAA GAGATTGATT TGTTTTTTTG ACATTTGCAA ATCTACAGGC 4131 || .......... .......... .......... .......... .......... ........GC 373 ATTGCTATTT GTGAACTTTA GCTCTGAATT TGATGCTTTT AAGTCCAAGT ACAACGATGT 4191 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTGCTATTT GTGAACTTTA GCTCTGAATT TGATGCTTTT AAGTCCAAGT ACAACGATGT 433 TGCTGTGATT TACAAAGGGG ATGGGGTGAG CTTTCTCTTG GGTGATGTTG AGGCTGGTCA 4251 |||||||||| ||| |||||| |||||||||| |||||||||| ||||||||| |||||||||| TGCTGTGATT TACGAAGGGG ATGGGGTGAG CTTTCTCTTG AGTGATGTTG AGGCTGGTCA 493 AGGTGCTTTT GAGGTTGGTT AAAATTTTCA ACTATCTGAT TACAGTGTCA TTGTATCCAT 4311 |||||||||| ||| AGGTGCTTTT GAG....... .......... .......... .......... .......... 506 GATCACGTAA AAAGGCGCGT TGAACATTCG TTTTATTTGG AATTGCAGTA CTTCGGACTG 4371 || |||||||||| .......... .......... .......... .......... ........TA CTTCGGACTG 518 AAGCCGGAAC AGGCACCTGT GATCATCATA ATGGACGCTG ATGAACAAAA GTATATTAAG 4431 |||||||||| | |||||||| |||||||||| |||||||||| |||||||||| ||||||||| AAGCCGGAAC ACGCACCTGT GATCATCATA ATGGACGCTG ATGAACAAAA GTATATTAAC 578 GACCATGTGG AACCTGATGC CATTGCTGCT TACTTGAAGG ATT 4474 |||| ||||| | |||||||| |||||||||| |||||||||| ||| GACCGTGTGG AGCCTGATGC CATTGCTGCT TACTTGAAGG ATT 621 hqPGS_C06HBa0054K13.1-11+_SGN-E320450+ (3352 3410,3509 3694,3810 3935,4130 4264,4360 4474) ******************************************************************************** EST sequence 120 +strand 580 n (File: SGN-E316738+) 1 ACAAACCTTA TTGATGAGAA AAGTATCTTT GTTGGTGGTA TATTTCCAGA CCCCTCCGGA 61 GAGAAATTCG AGAACTATTT AACGCTAGCT GAAAAACTGC GAGGCGAGTT CGATTTTGCT 121 CACACTGTTG ATGCTAAACA CCTCCCTCGG GGTGGACCAG TCAACAAGCC CACTCTTCGT 181 CTTCTAAAGC CATTTGATGA ACTCTTTGTT GATTTTGAGG ACTTTGATGT CGATGCAATG 241 GAGAAGTTCA TCTCAGAATC TAGTATTCCT GTTGTTACTA TTTTTGACAA TGACCCAAAC 301 AACCATCCTT ATGTTAACAA GTTCTTCGAA GGCACCAACG CCAAGGCATT GCTATTTGTG 361 AACTTTAGCT CTGAATTTGA TGCTTTTAAG TCCAAGTACA ACGATGTTGC TGTGATTTAC 421 AAAGGGGATG GGGTGAGCTT TCTCTTGGGT GATGTTGACG CTGGTCAAGG TGCTTTTGAG 481 TACTTCGGAC TGAAGCCGGA ACAGGCACCT GTGATCATCA TAATGGACGC TGATGAACAA 541 AAGTATATTA AGGACCATGT GGAACCTGAT GCCATTGCTG Predicted gene structure (within gDNA segment 2778 to 4982): Exon 1 3378 3410 ( 33 n); cDNA 1 33 ( 33 n); score: 1.000 Intron 1 3411 3508 ( 98 n); Pd: 0.907 (s: 0), Pa: 0.997 (s: 0.98) Exon 2 3509 3694 ( 186 n); cDNA 34 219 ( 186 n); score: 0.995 Intron 2 3695 3809 ( 115 n); Pd: 0.988 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 3 3810 3935 ( 126 n); cDNA 220 345 ( 126 n); score: 1.000 Intron 3 3936 4129 ( 194 n); Pd: 0.981 (s: 1.00), Pa: 0.965 (s: 1.00) Exon 4 4130 4264 ( 135 n); cDNA 346 480 ( 135 n); score: 0.993 Intron 4 4265 4359 ( 95 n); Pd: 0.997 (s: 0.98), Pa: 0.858 (s: 1.00) Exon 5 4360 4459 ( 100 n); cDNA 481 580 ( 100 n); score: 1.000 MATCH C06HBa0054K13.1-11+ SGN-E316738+ 0.996 580 1.000 C PGS_C06HBa0054K13.1-11+_SGN-E316738+ (3378 3410,3509 3694,3810 3935,4130 4264,4360 4459) Alignment (genomic DNA sequence = upper lines): ACAAACCTTA TTGATGAGAA AAGTATCTTT GTTGTAAGTG GTGATACTTT TGATGTTTTA 3437 |||||||||| |||||||||| |||||||||| ||| ACAAACCTTA TTGATGAGAA AAGTATCTTT GTT....... .......... .......... 33 CTTATCATTA CTGAAGTTTA TTTTCAGCAT GCCATAGCTT CTTGCTGTCT AAAATCTTTC 3497 .......... .......... .......... .......... .......... .......... 33 TGTTTCTTTA GGTTGGTATA TTTCCAGACC CCTCCGGAGA GAAATTCGAG AACTATTTAA 3557 | ||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... .GGTGGTATA TTTCCAGACC CCTCCGGAGA GAAATTCGAG AACTATTTAA 82 CGCTAGCTGA AAAACTGCGA GGCGAGTTCG ATTTTGCTCA CACTGTTGAT GCTAAACACC 3617 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGCTAGCTGA AAAACTGCGA GGCGAGTTCG ATTTTGCTCA CACTGTTGAT GCTAAACACC 142 TCCCTCGGGG TGGACCAGTC AACAAGCCCA CTCTTCGTCT TCTAAAGCCA TTTGATGAAC 3677 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCCCTCGGGG TGGACCAGTC AACAAGCCCA CTCTTCGTCT TCTAAAGCCA TTTGATGAAC 202 TCTTTGTTGA TTTTGAGGTA TTACAGTTAT CTGTGTATAT TTTTATCTTT GATACTCATT 3737 |||||||||| ||||||| TCTTTGTTGA TTTTGAG... .......... .......... .......... .......... 219 GTATTATGGT TATGAGGCTC AACTCTGTCC TATGTTATCT TTTAATTGGC CATTGATTGT 3797 .......... .......... .......... .......... .......... .......... 219 ACATACTTGC AGGACTTTGA TGTCGATGCA ATGGAGAAGT TCATCTCAGA ATCTAGTATT 3857 |||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ..GACTTTGA TGTCGATGCA ATGGAGAAGT TCATCTCAGA ATCTAGTATT 267 CCTGTTGTTA CTATTTTTGA CAATGACCCA AACAACCATC CTTATGTTAA CAAGTTCTTC 3917 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCTGTTGTTA CTATTTTTGA CAATGACCCA AACAACCATC CTTATGTTAA CAAGTTCTTC 327 GAAGGCACCA ACGCCAAGGT ACTTGATTCT GCGAGCTGTA ATGCTTCAAT TTGACCTTAT 3977 |||||||||| |||||||| GAAGGCACCA ACGCCAAG.. .......... .......... .......... .......... 345 ATTTCAACGT CAAGCAATTC TAGGATCTTC TCATGAATTT TACAGTTATA TGCTTGTACT 4037 .......... .......... .......... .......... .......... .......... 345 TGTATTATTT TCTTTTCATT CACTAATATT TGACAATTAA CTTCAAAGTT CTAAGAGATT 4097 .......... .......... .......... .......... .......... .......... 345 GATTTGTTTT TTTGACATTT GCAAATCTAC AGGCATTGCT ATTTGTGAAC TTTAGCTCTG 4157 |||||||| |||||||||| |||||||||| .......... .......... .......... ..GCATTGCT ATTTGTGAAC TTTAGCTCTG 373 AATTTGATGC TTTTAAGTCC AAGTACAACG ATGTTGCTGT GATTTACAAA GGGGATGGGG 4217 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATTTGATGC TTTTAAGTCC AAGTACAACG ATGTTGCTGT GATTTACAAA GGGGATGGGG 433 TGAGCTTTCT CTTGGGTGAT GTTGAGGCTG GTCAAGGTGC TTTTGAGGTT GGTTAAAATT 4277 |||||||||| |||||||||| ||||| |||| |||||||||| ||||||| TGAGCTTTCT CTTGGGTGAT GTTGACGCTG GTCAAGGTGC TTTTGAG... .......... 480 TTCAACTATC TGATTACAGT GTCATTGTAT CCATGATCAC GTAAAAAGGC GCGTTGAACA 4337 .......... .......... .......... .......... .......... .......... 480 TTCGTTTTAT TTGGAATTGC AGTACTTCGG ACTGAAGCCG GAACAGGCAC CTGTGATCAT 4397 |||||||| |||||||||| |||||||||| |||||||||| .......... .......... ..TACTTCGG ACTGAAGCCG GAACAGGCAC CTGTGATCAT 518 CATAATGGAC GCTGATGAAC AAAAGTATAT TAAGGACCAT GTGGAACCTG ATGCCATTGC 4457 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATAATGGAC GCTGATGAAC AAAAGTATAT TAAGGACCAT GTGGAACCTG ATGCCATTGC 578 TG 4459 || TG 580 hqPGS_C06HBa0054K13.1-11+_SGN-E316738+ (3378 3410,3509 3694,3810 3935,4130 4264,4360 4459) ******************************************************************************** EST sequence 31 +strand 533 n (File: SGN-E316587+) 1 ACAAACCTTA TTGATGAGAA AAGTATCTTT GTTGTTGGTA TATTTCCAGA CCCCTCCGGA 61 GAGAAATTCG AGAACTATTT AACGCTAGCT GAAAAACTGC GAGGCGAGTT CGATTTTGCT 121 CACACTGTTG ATGCTAAACA CCTCCCTCGG GGTGGACCAG TCAACAAGCC CACTCTTCGT 181 CTTCTAAAGC CATTTGATGA ACTCTTTGTT GATTTTGAGG ACTTTGATGT CGATGCAATG 241 GAGAAGTTCA TCTCAGAATC TAGTATTCCT GTTGTTACTA TTTTTGACAA TGACCCAAAC 301 AACCATCCTT ATGTTAACAA GTTCTTCGAA GGCACCAACG CCAAGGCATT GCTATTTGTG 361 AACTTTAGCT CTGAATTTGA TGCTTTTAAG TCCAAGTACA ACGATGTTGC TGTGATTTAC 421 AAAGGGGATG GGGTGAGCTT TCTCTTGGGT GATGTTGAGG CTGGTCAAGG TGCTTTTGAG 481 TACTTCGGAC TGAAGCCGGA ACAGGCACCT GTGATCATCA TAATGGACGC TGA Predicted gene structure (within gDNA segment 2778 to 4982): Exon 1 3378 3410 ( 33 n); cDNA 1 33 ( 33 n); score: 1.000 Intron 1 3411 3508 ( 98 n); Pd: 0.907 (s: 0), Pa: 0.997 (s: 1.00) Exon 2 3509 3694 ( 186 n); cDNA 34 219 ( 186 n); score: 1.000 Intron 2 3695 3809 ( 115 n); Pd: 0.988 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 3 3810 3935 ( 126 n); cDNA 220 345 ( 126 n); score: 1.000 Intron 3 3936 4129 ( 194 n); Pd: 0.981 (s: 1.00), Pa: 0.965 (s: 1.00) Exon 4 4130 4264 ( 135 n); cDNA 346 480 ( 135 n); score: 1.000 Intron 4 4265 4359 ( 95 n); Pd: 0.997 (s: 1.00), Pa: 0.858 (s: 1.00) Exon 5 4360 4412 ( 53 n); cDNA 481 533 ( 53 n); score: 1.000 MATCH C06HBa0054K13.1-11+ SGN-E316587+ 1.000 533 1.000 C PGS_C06HBa0054K13.1-11+_SGN-E316587+ (3378 3410,3509 3694,3810 3935,4130 4264,4360 4412) Alignment (genomic DNA sequence = upper lines): ACAAACCTTA TTGATGAGAA AAGTATCTTT GTTGTAAGTG GTGATACTTT TGATGTTTTA 3437 |||||||||| |||||||||| |||||||||| ||| ACAAACCTTA TTGATGAGAA AAGTATCTTT GTT....... .......... .......... 33 CTTATCATTA CTGAAGTTTA TTTTCAGCAT GCCATAGCTT CTTGCTGTCT AAAATCTTTC 3497 .......... .......... .......... .......... .......... .......... 33 TGTTTCTTTA GGTTGGTATA TTTCCAGACC CCTCCGGAGA GAAATTCGAG AACTATTTAA 3557 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... .GTTGGTATA TTTCCAGACC CCTCCGGAGA GAAATTCGAG AACTATTTAA 82 CGCTAGCTGA AAAACTGCGA GGCGAGTTCG ATTTTGCTCA CACTGTTGAT GCTAAACACC 3617 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGCTAGCTGA AAAACTGCGA GGCGAGTTCG ATTTTGCTCA CACTGTTGAT GCTAAACACC 142 TCCCTCGGGG TGGACCAGTC AACAAGCCCA CTCTTCGTCT TCTAAAGCCA TTTGATGAAC 3677 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCCCTCGGGG TGGACCAGTC AACAAGCCCA CTCTTCGTCT TCTAAAGCCA TTTGATGAAC 202 TCTTTGTTGA TTTTGAGGTA TTACAGTTAT CTGTGTATAT TTTTATCTTT GATACTCATT 3737 |||||||||| ||||||| TCTTTGTTGA TTTTGAG... .......... .......... .......... .......... 219 GTATTATGGT TATGAGGCTC AACTCTGTCC TATGTTATCT TTTAATTGGC CATTGATTGT 3797 .......... .......... .......... .......... .......... .......... 219 ACATACTTGC AGGACTTTGA TGTCGATGCA ATGGAGAAGT TCATCTCAGA ATCTAGTATT 3857 |||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ..GACTTTGA TGTCGATGCA ATGGAGAAGT TCATCTCAGA ATCTAGTATT 267 CCTGTTGTTA CTATTTTTGA CAATGACCCA AACAACCATC CTTATGTTAA CAAGTTCTTC 3917 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCTGTTGTTA CTATTTTTGA CAATGACCCA AACAACCATC CTTATGTTAA CAAGTTCTTC 327 GAAGGCACCA ACGCCAAGGT ACTTGATTCT GCGAGCTGTA ATGCTTCAAT TTGACCTTAT 3977 |||||||||| |||||||| GAAGGCACCA ACGCCAAG.. .......... .......... .......... .......... 345 ATTTCAACGT CAAGCAATTC TAGGATCTTC TCATGAATTT TACAGTTATA TGCTTGTACT 4037 .......... .......... .......... .......... .......... .......... 345 TGTATTATTT TCTTTTCATT CACTAATATT TGACAATTAA CTTCAAAGTT CTAAGAGATT 4097 .......... .......... .......... .......... .......... .......... 345 GATTTGTTTT TTTGACATTT GCAAATCTAC AGGCATTGCT ATTTGTGAAC TTTAGCTCTG 4157 |||||||| |||||||||| |||||||||| .......... .......... .......... ..GCATTGCT ATTTGTGAAC TTTAGCTCTG 373 AATTTGATGC TTTTAAGTCC AAGTACAACG ATGTTGCTGT GATTTACAAA GGGGATGGGG 4217 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATTTGATGC TTTTAAGTCC AAGTACAACG ATGTTGCTGT GATTTACAAA GGGGATGGGG 433 TGAGCTTTCT CTTGGGTGAT GTTGAGGCTG GTCAAGGTGC TTTTGAGGTT GGTTAAAATT 4277 |||||||||| |||||||||| |||||||||| |||||||||| ||||||| TGAGCTTTCT CTTGGGTGAT GTTGAGGCTG GTCAAGGTGC TTTTGAG... .......... 480 TTCAACTATC TGATTACAGT GTCATTGTAT CCATGATCAC GTAAAAAGGC GCGTTGAACA 4337 .......... .......... .......... .......... .......... .......... 480 TTCGTTTTAT TTGGAATTGC AGTACTTCGG ACTGAAGCCG GAACAGGCAC CTGTGATCAT 4397 |||||||| |||||||||| |||||||||| |||||||||| .......... .......... ..TACTTCGG ACTGAAGCCG GAACAGGCAC CTGTGATCAT 518 CATAATGGAC GCTGA 4412 |||||||||| ||||| CATAATGGAC GCTGA 533 hqPGS_C06HBa0054K13.1-11+_SGN-E316587+ (3378 3410,3509 3694,3810 3935,4130 4264,4360 4412) ******************************************************************************** EST sequence 73 +strand 378 n (File: SGN-E200816+) 1 TGATGAGAAA AGTATCTTTG TTGTTGGTAT ATTTCCAGAC CCCTCCGGAG AGAAATTCGA 61 GAACTATTTA ACGCTAGCTG AAAAACTGCG AGGCGAGTTC GATTTTGCTC ACACTGTTGA 121 TGCTAAACAC CTCCCTCGGG GTGGACCAGT CAACAAGCCC ACTCTTCGTC TTCTAAAGCC 181 ATTTGATGAA CTCTTTGTTG ATTTTGAGGA CTTTGATGTC GATGCAATGG AGAAGTTCAT 241 CTCAGAATCT AGTATTCCTG TTGTTACTAT TTTTGACAAT GACCCAAACA ACCATCCTTA 301 TGTTAACAAG TTCTTCGAAG GCACCAACGC CAAGGCATTG CTATTTGTGA ACTTTAGCTC 361 TGAATTTGAT GCTTTTAA Predicted gene structure (within gDNA segment 2689 to 4783): Exon 1 3389 3410 ( 22 n); cDNA 1 22 ( 22 n); score: 1.000 Intron 1 3411 3508 ( 98 n); Pd: 0.907 (s: 0), Pa: 0.997 (s: 1.00) Exon 2 3509 3694 ( 186 n); cDNA 23 208 ( 186 n); score: 1.000 Intron 2 3695 3809 ( 115 n); Pd: 0.988 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 3 3810 3935 ( 126 n); cDNA 209 334 ( 126 n); score: 1.000 Intron 3 3936 4129 ( 194 n); Pd: 0.981 (s: 1.00), Pa: 0.965 (s: 1.00) Exon 4 4130 4173 ( 44 n); cDNA 335 378 ( 44 n); score: 1.000 MATCH C06HBa0054K13.1-11+ SGN-E200816+ 1.000 378 1.000 C PGS_C06HBa0054K13.1-11+_SGN-E200816+ (3389 3410,3509 3694,3810 3935,4130 4173) Alignment (genomic DNA sequence = upper lines): TGATGAGAAA AGTATCTTTG TTGTAAGTGG TGATACTTTT GATGTTTTAC TTATCATTAC 3448 |||||||||| |||||||||| || TGATGAGAAA AGTATCTTTG TT........ .......... .......... .......... 22 TGAAGTTTAT TTTCAGCATG CCATAGCTTC TTGCTGTCTA AAATCTTTCT GTTTCTTTAG 3508 .......... .......... .......... .......... .......... .......... 22 GTTGGTATAT TTCCAGACCC CTCCGGAGAG AAATTCGAGA ACTATTTAAC GCTAGCTGAA 3568 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTGGTATAT TTCCAGACCC CTCCGGAGAG AAATTCGAGA ACTATTTAAC GCTAGCTGAA 82 AAACTGCGAG GCGAGTTCGA TTTTGCTCAC ACTGTTGATG CTAAACACCT CCCTCGGGGT 3628 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAACTGCGAG GCGAGTTCGA TTTTGCTCAC ACTGTTGATG CTAAACACCT CCCTCGGGGT 142 GGACCAGTCA ACAAGCCCAC TCTTCGTCTT CTAAAGCCAT TTGATGAACT CTTTGTTGAT 3688 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGACCAGTCA ACAAGCCCAC TCTTCGTCTT CTAAAGCCAT TTGATGAACT CTTTGTTGAT 202 TTTGAGGTAT TACAGTTATC TGTGTATATT TTTATCTTTG ATACTCATTG TATTATGGTT 3748 |||||| TTTGAG.... .......... .......... .......... .......... .......... 208 ATGAGGCTCA ACTCTGTCCT ATGTTATCTT TTAATTGGCC ATTGATTGTA CATACTTGCA 3808 .......... .......... .......... .......... .......... .......... 208 GGACTTTGAT GTCGATGCAA TGGAGAAGTT CATCTCAGAA TCTAGTATTC CTGTTGTTAC 3868 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .GACTTTGAT GTCGATGCAA TGGAGAAGTT CATCTCAGAA TCTAGTATTC CTGTTGTTAC 267 TATTTTTGAC AATGACCCAA ACAACCATCC TTATGTTAAC AAGTTCTTCG AAGGCACCAA 3928 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATTTTTGAC AATGACCCAA ACAACCATCC TTATGTTAAC AAGTTCTTCG AAGGCACCAA 327 CGCCAAGGTA CTTGATTCTG CGAGCTGTAA TGCTTCAATT TGACCTTATA TTTCAACGTC 3988 ||||||| CGCCAAG... .......... .......... .......... .......... .......... 334 AAGCAATTCT AGGATCTTCT CATGAATTTT ACAGTTATAT GCTTGTACTT GTATTATTTT 4048 .......... .......... .......... .......... .......... .......... 334 CTTTTCATTC ACTAATATTT GACAATTAAC TTCAAAGTTC TAAGAGATTG ATTTGTTTTT 4108 .......... .......... .......... .......... .......... .......... 334 TTGACATTTG CAAATCTACA GGCATTGCTA TTTGTGAACT TTAGCTCTGA ATTTGATGCT 4168 ||||||||| |||||||||| |||||||||| |||||||||| .......... .......... .GCATTGCTA TTTGTGAACT TTAGCTCTGA ATTTGATGCT 373 TTTAA 4173 ||||| TTTAA 378 hqPGS_C06HBa0054K13.1-11+_SGN-E200816+ (3389 3410,3509 3694,3810 3935,4130 4173) ******************************************************************************** EST sequence 71 +strand 373 n (File: SGN-E324653+) 1 GAAAAGTATC TTTGTTGTTG GTATATTTCC AGACCCCTCC GGAGAGAAAT TCGAGAACTA 61 TTTAACGCTA GCTGAAAAAC TGCGAGGCGA GTTCGATTTT GCTCACACTG TTGATGCTAA 121 ACACCTCCCT CGGGGTGGAC CAGTCAACAA GCCCACTCTT CGTCTTCTAA AGCCATTTGA 181 TGAACTCTTT GTTGATTTTG AGGACTTTGA TGTCTATGCA ATGGAGAAGT TCATCTCATA 241 ATCTAGTATT CCTGTTGTTA CTATTTTTGA CAATGACCCA AACAACCATT CTTATGTTAA 301 CAAGTTCTTC GAAAGCACCA ACGCCAAAGC ATTGCTATTT GTGAACTTTA GCTCTGAATT 361 TGATGCTTTT AAG Predicted gene structure (within gDNA segment 2749 to 4784): Exon 1 3395 3410 ( 16 n); cDNA 1 16 ( 16 n); score: 1.000 Intron 1 3411 3508 ( 98 n); Pd: 0.907 (s: 0), Pa: 0.997 (s: 1.00) Exon 2 3509 3694 ( 186 n); cDNA 17 202 ( 186 n); score: 1.000 Intron 2 3695 3809 ( 115 n); Pd: 0.988 (s: 1.00), Pa: 0.999 (s: 0.96) Exon 3 3810 3935 ( 126 n); cDNA 203 328 ( 126 n); score: 0.960 Intron 3 3936 4129 ( 194 n); Pd: 0.981 (s: 0.94), Pa: 0.965 (s: 1.00) Exon 4 4130 4174 ( 45 n); cDNA 329 373 ( 45 n); score: 1.000 MATCH C06HBa0054K13.1-11+ SGN-E324653+ 0.984 373 1.000 C PGS_C06HBa0054K13.1-11+_SGN-E324653+ (3395 3410,3509 3694,3810 3935,4130 4174) Alignment (genomic DNA sequence = upper lines): GAAAAGTATC TTTGTTGTAA GTGGTGATAC TTTTGATGTT TTACTTATCA TTACTGAAGT 3454 |||||||||| |||||| GAAAAGTATC TTTGTT.... .......... .......... .......... .......... 16 TTATTTTCAG CATGCCATAG CTTCTTGCTG TCTAAAATCT TTCTGTTTCT TTAGGTTGGT 3514 |||||| .......... .......... .......... .......... .......... ....GTTGGT 22 ATATTTCCAG ACCCCTCCGG AGAGAAATTC GAGAACTATT TAACGCTAGC TGAAAAACTG 3574 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATATTTCCAG ACCCCTCCGG AGAGAAATTC GAGAACTATT TAACGCTAGC TGAAAAACTG 82 CGAGGCGAGT TCGATTTTGC TCACACTGTT GATGCTAAAC ACCTCCCTCG GGGTGGACCA 3634 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGAGGCGAGT TCGATTTTGC TCACACTGTT GATGCTAAAC ACCTCCCTCG GGGTGGACCA 142 GTCAACAAGC CCACTCTTCG TCTTCTAAAG CCATTTGATG AACTCTTTGT TGATTTTGAG 3694 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTCAACAAGC CCACTCTTCG TCTTCTAAAG CCATTTGATG AACTCTTTGT TGATTTTGAG 202 GTATTACAGT TATCTGTGTA TATTTTTATC TTTGATACTC ATTGTATTAT GGTTATGAGG 3754 .......... .......... .......... .......... .......... .......... 202 CTCAACTCTG TCCTATGTTA TCTTTTAATT GGCCATTGAT TGTACATACT TGCAGGACTT 3814 ||||| .......... .......... .......... .......... .......... .....GACTT 207 TGATGTCGAT GCAATGGAGA AGTTCATCTC AGAATCTAGT ATTCCTGTTG TTACTATTTT 3874 ||||||| || |||||||||| |||||||||| | |||||||| |||||||||| |||||||||| TGATGTCTAT GCAATGGAGA AGTTCATCTC ATAATCTAGT ATTCCTGTTG TTACTATTTT 267 TGACAATGAC CCAAACAACC ATCCTTATGT TAACAAGTTC TTCGAAGGCA CCAACGCCAA 3934 |||||||||| |||||||||| || ||||||| |||||||||| |||||| ||| |||||||||| TGACAATGAC CCAAACAACC ATTCTTATGT TAACAAGTTC TTCGAAAGCA CCAACGCCAA 327 GGTACTTGAT TCTGCGAGCT GTAATGCTTC AATTTGACCT TATATTTCAA CGTCAAGCAA 3994 A......... .......... .......... .......... .......... .......... 328 TTCTAGGATC TTCTCATGAA TTTTACAGTT ATATGCTTGT ACTTGTATTA TTTTCTTTTC 4054 .......... .......... .......... .......... .......... .......... 328 ATTCACTAAT ATTTGACAAT TAACTTCAAA GTTCTAAGAG ATTGATTTGT TTTTTTGACA 4114 .......... .......... .......... .......... .......... .......... 328 TTTGCAAATC TACAGGCATT GCTATTTGTG AACTTTAGCT CTGAATTTGA TGCTTTTAAG 4174 ||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... .....GCATT GCTATTTGTG AACTTTAGCT CTGAATTTGA TGCTTTTAAG 373 hqPGS_C06HBa0054K13.1-11+_SGN-E324653+ (3395 3410,3509 3694,3810 3935,4130 4174) ******************************************************************************** EST sequence 38 +strand 204 n (File: SGN-E204202+) 1 GAAAAGTATC TTTGTTGTTG GTATATTTCC AGACCCCTCC GGAGAGAAAT TCGAGAACTA 61 TTTAACGCTA GCTGAAAAAC TGCGAGGCGA GTTCGATTTT GCTCACACTG TTGATGCTAA 121 ACACCTCCCT CGGGGTGGAC CAGTCAACAA GCCCACTCTT CGTCTTCTAA AGCCATTTGA 181 TGAACTCTTT GTTGATTTTG AGGA Predicted gene structure (within gDNA segment 2749 to 4315): Exon 1 3395 3410 ( 16 n); cDNA 1 16 ( 16 n); score: 1.000 Intron 1 3411 3508 ( 98 n); Pd: 0.907 (s: 0), Pa: 0.997 (s: 1.00) Exon 2 3509 3694 ( 186 n); cDNA 17 202 ( 186 n); score: 1.000 MATCH C06HBa0054K13.1-11+ SGN-E204202+ 1.000 202 0.990 C PGS_C06HBa0054K13.1-11+_SGN-E204202+ (3395 3410,3509 3694) Alignment (genomic DNA sequence = upper lines): GAAAAGTATC TTTGTTGTAA GTGGTGATAC TTTTGATGTT TTACTTATCA TTACTGAAGT 3454 |||||||||| |||||| GAAAAGTATC TTTGTT.... .......... .......... .......... .......... 16 TTATTTTCAG CATGCCATAG CTTCTTGCTG TCTAAAATCT TTCTGTTTCT TTAGGTTGGT 3514 |||||| .......... .......... .......... .......... .......... ....GTTGGT 22 ATATTTCCAG ACCCCTCCGG AGAGAAATTC GAGAACTATT TAACGCTAGC TGAAAAACTG 3574 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATATTTCCAG ACCCCTCCGG AGAGAAATTC GAGAACTATT TAACGCTAGC TGAAAAACTG 82 CGAGGCGAGT TCGATTTTGC TCACACTGTT GATGCTAAAC ACCTCCCTCG GGGTGGACCA 3634 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGAGGCGAGT TCGATTTTGC TCACACTGTT GATGCTAAAC ACCTCCCTCG GGGTGGACCA 142 GTCAACAAGC CCACTCTTCG TCTTCTAAAG CCATTTGATG AACTCTTTGT TGATTTTGAG 3694 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTCAACAAGC CCACTCTTCG TCTTCTAAAG CCATTTGATG AACTCTTTGT TGATTTTGAG 202 hqPGS_C06HBa0054K13.1-11+_SGN-E204202+ (3395 3410,3509 3694) ******************************************************************************** EST sequence 12 +strand 774 n (File: SGN-E262877+) 1 TTTGTTGTTG GTATATTTCC AGACCCCTCC GGAGAGAAAT TCGAGAACTA TTTAACGCTA 61 GCTGAAAAAC TGCGAGGCGA GTTCGATTTT GCTCACACTG TTGATGCTAA ACACCTCCCT 121 CGGGGTGGAC CAGTCAACAA GCCCACTCTT CGTCTTCTAA AGCCATTTGA TGAACTCTTT 181 GTTGATTTTG AGGACTTTGA TGTCGATGCA ATGGAGAAGT TCATCTCAGA ATCTAGTATT 241 CCTGTTGTTA CTATTTTTGA CAATGACCCA AACAACCATC CTTATGTTAA CAAGTTCTTC 301 GAAGGCACCA ACGCCAAGGC ATTGCTATTT GTGAACTTTA GCTCTGAATT TGATGCTTTT 361 AAGTCCAAGT ACAACGATGT TGCTGTGATT TACAAAGGGG ATGGGGTGAG CTTTCTCTTG 421 GGTGATGTTG AGGCTGGTCA AGGTGCTTTT GAGTACTTCG GACTGAAGCC GGAACAGGCA 481 CCTGTGATCA TCATAATGGA CGCTGATGAA CAAAAGTATA TTAAGGACCA TGTGGAACCT 541 GATGCCATTG CTGCTTACTT GAAGGATTAC AAGGAAGGAA AACTGAAGCC ACATGTGAAG 601 TCAGAGCCCA TCCCTGAAGT CAATGACGAA CCTGTTAAAG GTGGTTGTTA GGGATACCCT 661 CCAGGATATG GTTTACAAAT CGGGAAAAAA TGTGCTGTTA GAGTTCTATG CACCTTGGTG 721 TGGCCACTGC AAGAGTCTGG CTCCNNATTT TGGATGAAGT GGCTGTATCA TTTG Predicted gene structure (within gDNA segment 2849 to 4982): Exon 1 3405 3410 ( 6 n); cDNA 1 6 ( 6 n); score: 1.000 Intron 1 3411 3508 ( 98 n); Pd: 0.907 (s: 0), Pa: 0.997 (s: 1.00) Exon 2 3509 3694 ( 186 n); cDNA 7 192 ( 186 n); score: 1.000 Intron 2 3695 3809 ( 115 n); Pd: 0.988 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 3 3810 3935 ( 126 n); cDNA 193 318 ( 126 n); score: 1.000 Intron 3 3936 4129 ( 194 n); Pd: 0.981 (s: 1.00), Pa: 0.965 (s: 1.00) Exon 4 4130 4264 ( 135 n); cDNA 319 453 ( 135 n); score: 1.000 Intron 4 4265 4359 ( 95 n); Pd: 0.997 (s: 1.00), Pa: 0.858 (s: 1.00) Exon 5 4360 4479 ( 120 n); cDNA 454 573 ( 120 n); score: 1.000 Intron 5 4480 4604 ( 125 n); Pd: 1.000 (s: 1.00), Pa: 0.984 (s: 1.00) Exon 6 4605 4722 ( 118 n); cDNA 574 692 ( 119 n); score: 0.979 MATCH C06HBa0054K13.1-11+ SGN-E262877+ 0.996 691 0.893 C PGS_C06HBa0054K13.1-11+_SGN-E262877+ (3405 3410,3509 3694,3810 3935,4130 4264,4360 4479,4605 4722) Alignment (genomic DNA sequence = upper lines): TTTGTTGTAA GTGGTGATAC TTTTGATGTT TTACTTATCA TTACTGAAGT TTATTTTCAG 3464 |||||| TTTGTT.... .......... .......... .......... .......... .......... 6 CATGCCATAG CTTCTTGCTG TCTAAAATCT TTCTGTTTCT TTAGGTTGGT ATATTTCCAG 3524 |||||| |||||||||| .......... .......... .......... .......... ....GTTGGT ATATTTCCAG 22 ACCCCTCCGG AGAGAAATTC GAGAACTATT TAACGCTAGC TGAAAAACTG CGAGGCGAGT 3584 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACCCCTCCGG AGAGAAATTC GAGAACTATT TAACGCTAGC TGAAAAACTG CGAGGCGAGT 82 TCGATTTTGC TCACACTGTT GATGCTAAAC ACCTCCCTCG GGGTGGACCA GTCAACAAGC 3644 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCGATTTTGC TCACACTGTT GATGCTAAAC ACCTCCCTCG GGGTGGACCA GTCAACAAGC 142 CCACTCTTCG TCTTCTAAAG CCATTTGATG AACTCTTTGT TGATTTTGAG GTATTACAGT 3704 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCACTCTTCG TCTTCTAAAG CCATTTGATG AACTCTTTGT TGATTTTGAG .......... 192 TATCTGTGTA TATTTTTATC TTTGATACTC ATTGTATTAT GGTTATGAGG CTCAACTCTG 3764 .......... .......... .......... .......... .......... .......... 192 TCCTATGTTA TCTTTTAATT GGCCATTGAT TGTACATACT TGCAGGACTT TGATGTCGAT 3824 ||||| |||||||||| .......... .......... .......... .......... .....GACTT TGATGTCGAT 207 GCAATGGAGA AGTTCATCTC AGAATCTAGT ATTCCTGTTG TTACTATTTT TGACAATGAC 3884 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCAATGGAGA AGTTCATCTC AGAATCTAGT ATTCCTGTTG TTACTATTTT TGACAATGAC 267 CCAAACAACC ATCCTTATGT TAACAAGTTC TTCGAAGGCA CCAACGCCAA GGTACTTGAT 3944 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| | CCAAACAACC ATCCTTATGT TAACAAGTTC TTCGAAGGCA CCAACGCCAA G......... 318 TCTGCGAGCT GTAATGCTTC AATTTGACCT TATATTTCAA CGTCAAGCAA TTCTAGGATC 4004 .......... .......... .......... .......... .......... .......... 318 TTCTCATGAA TTTTACAGTT ATATGCTTGT ACTTGTATTA TTTTCTTTTC ATTCACTAAT 4064 .......... .......... .......... .......... .......... .......... 318 ATTTGACAAT TAACTTCAAA GTTCTAAGAG ATTGATTTGT TTTTTTGACA TTTGCAAATC 4124 .......... .......... .......... .......... .......... .......... 318 TACAGGCATT GCTATTTGTG AACTTTAGCT CTGAATTTGA TGCTTTTAAG TCCAAGTACA 4184 ||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .....GCATT GCTATTTGTG AACTTTAGCT CTGAATTTGA TGCTTTTAAG TCCAAGTACA 373 ACGATGTTGC TGTGATTTAC AAAGGGGATG GGGTGAGCTT TCTCTTGGGT GATGTTGAGG 4244 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACGATGTTGC TGTGATTTAC AAAGGGGATG GGGTGAGCTT TCTCTTGGGT GATGTTGAGG 433 CTGGTCAAGG TGCTTTTGAG GTTGGTTAAA ATTTTCAACT ATCTGATTAC AGTGTCATTG 4304 |||||||||| |||||||||| CTGGTCAAGG TGCTTTTGAG .......... .......... .......... .......... 453 TATCCATGAT CACGTAAAAA GGCGCGTTGA ACATTCGTTT TATTTGGAAT TGCAGTACTT 4364 ||||| .......... .......... .......... .......... .......... .....TACTT 458 CGGACTGAAG CCGGAACAGG CACCTGTGAT CATCATAATG GACGCTGATG AACAAAAGTA 4424 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGGACTGAAG CCGGAACAGG CACCTGTGAT CATCATAATG GACGCTGATG AACAAAAGTA 518 TATTAAGGAC CATGTGGAAC CTGATGCCAT TGCTGCTTAC TTGAAGGATT ACAAGGTGAT 4484 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||| TATTAAGGAC CATGTGGAAC CTGATGCCAT TGCTGCTTAC TTGAAGGATT ACAAG..... 573 GCATCCTCTT CTTTTTCTTG GATATATTTT GGAATGAAAG CGTTGTTAAT TGTGAACAAT 4544 .......... .......... .......... .......... .......... .......... 573 ATTCTGCACG GAAGGAAAGG CTTACTAACC TTTTTCCTCT AATTTTCCAC ATTGTTACAG 4604 .......... .......... .......... .......... .......... .......... 573 GAAGGAAAAC TGAAGCCACA TGTGAAGTCA GAGCCCATCC CTGAAGTCAA TGACGAACCT 4664 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAGGAAAAC TGAAGCCACA TGTGAAGTCA GAGCCCATCC CTGAAGTCAA TGACGAACCT 633 GTT-AAGGTG GTTGTTAGGG ATACCCTCCA GGATATGGTT TACAAATCGG GAAAAAATG 4722 ||| |||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| GTTAAAGGTG GTTGTTAGGG ATACCCTCCA GGATATGGTT TACAAATCGG GAAAAAATG 692 hqPGS_C06HBa0054K13.1-11+_SGN-E262877+ (3405 3410,3509 3694,3810 3935,4130 4264,4360 4479,4605 4722) ******************************************************************************** EST sequence 3 +strand 635 n (File: SGN-E261477+) 1 TTTGTTGTTG GTATATTTCC AGACCCCTCC GGAGAGAAAT TCGAGAACTA TTTAACGCTA 61 GCTGAAAAAC TGCGAGGCGA GTTCGATTTT GCTCACACTG TTGATGCTAA ACACCTCCCT 121 CGGGGTGGAC CAGTCAACAA GCCCACTCTT CGTCTTCTAA AGCCATTTGA TGAACTCTTT 181 GTTGATTTTG AGGACTTTGA TGTCGATGCA ATGGAGAAGT TCATCTCAGA ATCTAGTATT 241 CCTGTTGTTA CTATTTTTGA CAATGACCCA AACAACCATC CTTATGTTAA CAAGTTCTTC 301 GAAGGCACCA ACGCCAAGGC ATTGCTATTT GTGAACTTTA GCTCTGAATT TGATGCTTTT 361 AAGTCCAAGT ACAACGATGT TGCTGTGATT TACAAAGGGG ATGGGGTGAG CTTTCTCTTG 421 GGTGATGTTG AGGCTGGTCA AGGTGCTTTT GAGTACTTCG GACTGAAGCC GGAACAGGCA 481 CCTGTGATCA TCATAATGGA CGCTGATGAA CAAAAGTATA TTAAGGACCA TGTGGAACCT 541 GATGCCATTG CTGCTTACTT GAAGGATTAC AAGGAAGGAA AACTGAAGCC ACATGTGAAG 601 TCAGAGCCCA TCCCTGAAGT CAATGACGAA CCTGT Predicted gene structure (within gDNA segment 2849 to 4982): Exon 1 3405 3410 ( 6 n); cDNA 1 6 ( 6 n); score: 1.000 Intron 1 3411 3508 ( 98 n); Pd: 0.907 (s: 0), Pa: 0.997 (s: 1.00) Exon 2 3509 3694 ( 186 n); cDNA 7 192 ( 186 n); score: 1.000 Intron 2 3695 3809 ( 115 n); Pd: 0.988 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 3 3810 3935 ( 126 n); cDNA 193 318 ( 126 n); score: 1.000 Intron 3 3936 4129 ( 194 n); Pd: 0.981 (s: 1.00), Pa: 0.965 (s: 1.00) Exon 4 4130 4264 ( 135 n); cDNA 319 453 ( 135 n); score: 1.000 Intron 4 4265 4359 ( 95 n); Pd: 0.997 (s: 1.00), Pa: 0.858 (s: 1.00) Exon 5 4360 4479 ( 120 n); cDNA 454 573 ( 120 n); score: 1.000 Intron 5 4480 4604 ( 125 n); Pd: 1.000 (s: 1.00), Pa: 0.984 (s: 1.00) Exon 6 4605 4666 ( 62 n); cDNA 574 635 ( 62 n); score: 1.000 MATCH C06HBa0054K13.1-11+ SGN-E261477+ 1.000 635 1.000 C PGS_C06HBa0054K13.1-11+_SGN-E261477+ (3405 3410,3509 3694,3810 3935,4130 4264,4360 4479,4605 4666) Alignment (genomic DNA sequence = upper lines): TTTGTTGTAA GTGGTGATAC TTTTGATGTT TTACTTATCA TTACTGAAGT TTATTTTCAG 3464 |||||| TTTGTT.... .......... .......... .......... .......... .......... 6 CATGCCATAG CTTCTTGCTG TCTAAAATCT TTCTGTTTCT TTAGGTTGGT ATATTTCCAG 3524 |||||| |||||||||| .......... .......... .......... .......... ....GTTGGT ATATTTCCAG 22 ACCCCTCCGG AGAGAAATTC GAGAACTATT TAACGCTAGC TGAAAAACTG CGAGGCGAGT 3584 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACCCCTCCGG AGAGAAATTC GAGAACTATT TAACGCTAGC TGAAAAACTG CGAGGCGAGT 82 TCGATTTTGC TCACACTGTT GATGCTAAAC ACCTCCCTCG GGGTGGACCA GTCAACAAGC 3644 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCGATTTTGC TCACACTGTT GATGCTAAAC ACCTCCCTCG GGGTGGACCA GTCAACAAGC 142 CCACTCTTCG TCTTCTAAAG CCATTTGATG AACTCTTTGT TGATTTTGAG GTATTACAGT 3704 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCACTCTTCG TCTTCTAAAG CCATTTGATG AACTCTTTGT TGATTTTGAG .......... 192 TATCTGTGTA TATTTTTATC TTTGATACTC ATTGTATTAT GGTTATGAGG CTCAACTCTG 3764 .......... .......... .......... .......... .......... .......... 192 TCCTATGTTA TCTTTTAATT GGCCATTGAT TGTACATACT TGCAGGACTT TGATGTCGAT 3824 ||||| |||||||||| .......... .......... .......... .......... .....GACTT TGATGTCGAT 207 GCAATGGAGA AGTTCATCTC AGAATCTAGT ATTCCTGTTG TTACTATTTT TGACAATGAC 3884 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCAATGGAGA AGTTCATCTC AGAATCTAGT ATTCCTGTTG TTACTATTTT TGACAATGAC 267 CCAAACAACC ATCCTTATGT TAACAAGTTC TTCGAAGGCA CCAACGCCAA GGTACTTGAT 3944 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| | CCAAACAACC ATCCTTATGT TAACAAGTTC TTCGAAGGCA CCAACGCCAA G......... 318 TCTGCGAGCT GTAATGCTTC AATTTGACCT TATATTTCAA CGTCAAGCAA TTCTAGGATC 4004 .......... .......... .......... .......... .......... .......... 318 TTCTCATGAA TTTTACAGTT ATATGCTTGT ACTTGTATTA TTTTCTTTTC ATTCACTAAT 4064 .......... .......... .......... .......... .......... .......... 318 ATTTGACAAT TAACTTCAAA GTTCTAAGAG ATTGATTTGT TTTTTTGACA TTTGCAAATC 4124 .......... .......... .......... .......... .......... .......... 318 TACAGGCATT GCTATTTGTG AACTTTAGCT CTGAATTTGA TGCTTTTAAG TCCAAGTACA 4184 ||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .....GCATT GCTATTTGTG AACTTTAGCT CTGAATTTGA TGCTTTTAAG TCCAAGTACA 373 ACGATGTTGC TGTGATTTAC AAAGGGGATG GGGTGAGCTT TCTCTTGGGT GATGTTGAGG 4244 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACGATGTTGC TGTGATTTAC AAAGGGGATG GGGTGAGCTT TCTCTTGGGT GATGTTGAGG 433 CTGGTCAAGG TGCTTTTGAG GTTGGTTAAA ATTTTCAACT ATCTGATTAC AGTGTCATTG 4304 |||||||||| |||||||||| CTGGTCAAGG TGCTTTTGAG .......... .......... .......... .......... 453 TATCCATGAT CACGTAAAAA GGCGCGTTGA ACATTCGTTT TATTTGGAAT TGCAGTACTT 4364 ||||| .......... .......... .......... .......... .......... .....TACTT 458 CGGACTGAAG CCGGAACAGG CACCTGTGAT CATCATAATG GACGCTGATG AACAAAAGTA 4424 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGGACTGAAG CCGGAACAGG CACCTGTGAT CATCATAATG GACGCTGATG AACAAAAGTA 518 TATTAAGGAC CATGTGGAAC CTGATGCCAT TGCTGCTTAC TTGAAGGATT ACAAGGTGAT 4484 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||| TATTAAGGAC CATGTGGAAC CTGATGCCAT TGCTGCTTAC TTGAAGGATT ACAAG..... 573 GCATCCTCTT CTTTTTCTTG GATATATTTT GGAATGAAAG CGTTGTTAAT TGTGAACAAT 4544 .......... .......... .......... .......... .......... .......... 573 ATTCTGCACG GAAGGAAAGG CTTACTAACC TTTTTCCTCT AATTTTCCAC ATTGTTACAG 4604 .......... .......... .......... .......... .......... .......... 573 GAAGGAAAAC TGAAGCCACA TGTGAAGTCA GAGCCCATCC CTGAAGTCAA TGACGAACCT 4664 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAGGAAAAC TGAAGCCACA TGTGAAGTCA GAGCCCATCC CTGAAGTCAA TGACGAACCT 633 GT 4666 || GT 635 hqPGS_C06HBa0054K13.1-11+_SGN-E261477+ (3405 3410,3509 3694,3810 3935,4130 4264,4360 4479,4605 4666) ******************************************************************************** EST sequence 53 +strand 561 n (File: SGN-E253672+) 1 TTTGTTGTTG GTATATTTCC AGACCCCTCC GGAGAGAAAT TCGAGAACTA TTTAACGCTA 61 GCTGAAAAAC TGCGAGGCGA GTTCGATTTT GCTCACACTG TTGATGCTAA ACACCTCCCT 121 CGGGGTGGAC CAGTCAACAA GCCCACTCTT CGTCTTCTAA AGCCATTTGA TGAACTCTTT 181 GTTGATTTTG AGGACTTTGA TGTCGATGCA ATGGAGAAGT TCATCTCAGA ATCTAGTATT 241 CCTGTTGTTA CTATTTTTGA CAATGACCCA AACAACCATC CTTATGTTAA CAAGTTCTTC 301 GAAGGCACCA ACGCCAAGGC ATTGCTATTT GTGAACTTTA GCTCTGAATT TGATGCTGTT 361 AAGTCCAAGT ACAACGATGT TGCTGTGATT TACAAAGGGG ATGGGGTGAG CTTTCTCTTG 421 GGTGATGTTG AGGCTGGTCA AGGTGCTTTT GAGTACTTCG GACTGAAGCC GGAACAGGCA 481 CCTGTGATCA TCATAATGGA CGCTGATGAA CAAAAGTATA TTAAGGACCA TGTGGAACCT 541 GATGCCATTG CTGCTTACTT G Predicted gene structure (within gDNA segment 2849 to 4982): Exon 1 3405 3410 ( 6 n); cDNA 1 6 ( 6 n); score: 1.000 Intron 1 3411 3508 ( 98 n); Pd: 0.907 (s: 0), Pa: 0.997 (s: 1.00) Exon 2 3509 3694 ( 186 n); cDNA 7 192 ( 186 n); score: 1.000 Intron 2 3695 3809 ( 115 n); Pd: 0.988 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 3 3810 3935 ( 126 n); cDNA 193 318 ( 126 n); score: 1.000 Intron 3 3936 4129 ( 194 n); Pd: 0.981 (s: 1.00), Pa: 0.965 (s: 0.98) Exon 4 4130 4264 ( 135 n); cDNA 319 453 ( 135 n); score: 0.993 Intron 4 4265 4359 ( 95 n); Pd: 0.997 (s: 1.00), Pa: 0.858 (s: 1.00) Exon 5 4360 4467 ( 108 n); cDNA 454 561 ( 108 n); score: 1.000 MATCH C06HBa0054K13.1-11+ SGN-E253672+ 0.998 561 1.000 C PGS_C06HBa0054K13.1-11+_SGN-E253672+ (3405 3410,3509 3694,3810 3935,4130 4264,4360 4467) Alignment (genomic DNA sequence = upper lines): TTTGTTGTAA GTGGTGATAC TTTTGATGTT TTACTTATCA TTACTGAAGT TTATTTTCAG 3464 |||||| TTTGTT.... .......... .......... .......... .......... .......... 6 CATGCCATAG CTTCTTGCTG TCTAAAATCT TTCTGTTTCT TTAGGTTGGT ATATTTCCAG 3524 |||||| |||||||||| .......... .......... .......... .......... ....GTTGGT ATATTTCCAG 22 ACCCCTCCGG AGAGAAATTC GAGAACTATT TAACGCTAGC TGAAAAACTG CGAGGCGAGT 3584 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACCCCTCCGG AGAGAAATTC GAGAACTATT TAACGCTAGC TGAAAAACTG CGAGGCGAGT 82 TCGATTTTGC TCACACTGTT GATGCTAAAC ACCTCCCTCG GGGTGGACCA GTCAACAAGC 3644 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCGATTTTGC TCACACTGTT GATGCTAAAC ACCTCCCTCG GGGTGGACCA GTCAACAAGC 142 CCACTCTTCG TCTTCTAAAG CCATTTGATG AACTCTTTGT TGATTTTGAG GTATTACAGT 3704 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCACTCTTCG TCTTCTAAAG CCATTTGATG AACTCTTTGT TGATTTTGAG .......... 192 TATCTGTGTA TATTTTTATC TTTGATACTC ATTGTATTAT GGTTATGAGG CTCAACTCTG 3764 .......... .......... .......... .......... .......... .......... 192 TCCTATGTTA TCTTTTAATT GGCCATTGAT TGTACATACT TGCAGGACTT TGATGTCGAT 3824 ||||| |||||||||| .......... .......... .......... .......... .....GACTT TGATGTCGAT 207 GCAATGGAGA AGTTCATCTC AGAATCTAGT ATTCCTGTTG TTACTATTTT TGACAATGAC 3884 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCAATGGAGA AGTTCATCTC AGAATCTAGT ATTCCTGTTG TTACTATTTT TGACAATGAC 267 CCAAACAACC ATCCTTATGT TAACAAGTTC TTCGAAGGCA CCAACGCCAA GGTACTTGAT 3944 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| | CCAAACAACC ATCCTTATGT TAACAAGTTC TTCGAAGGCA CCAACGCCAA G......... 318 TCTGCGAGCT GTAATGCTTC AATTTGACCT TATATTTCAA CGTCAAGCAA TTCTAGGATC 4004 .......... .......... .......... .......... .......... .......... 318 TTCTCATGAA TTTTACAGTT ATATGCTTGT ACTTGTATTA TTTTCTTTTC ATTCACTAAT 4064 .......... .......... .......... .......... .......... .......... 318 ATTTGACAAT TAACTTCAAA GTTCTAAGAG ATTGATTTGT TTTTTTGACA TTTGCAAATC 4124 .......... .......... .......... .......... .......... .......... 318 TACAGGCATT GCTATTTGTG AACTTTAGCT CTGAATTTGA TGCTTTTAAG TCCAAGTACA 4184 ||||| |||||||||| |||||||||| |||||||||| |||| ||||| |||||||||| .....GCATT GCTATTTGTG AACTTTAGCT CTGAATTTGA TGCTGTTAAG TCCAAGTACA 373 ACGATGTTGC TGTGATTTAC AAAGGGGATG GGGTGAGCTT TCTCTTGGGT GATGTTGAGG 4244 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACGATGTTGC TGTGATTTAC AAAGGGGATG GGGTGAGCTT TCTCTTGGGT GATGTTGAGG 433 CTGGTCAAGG TGCTTTTGAG GTTGGTTAAA ATTTTCAACT ATCTGATTAC AGTGTCATTG 4304 |||||||||| |||||||||| CTGGTCAAGG TGCTTTTGAG .......... .......... .......... .......... 453 TATCCATGAT CACGTAAAAA GGCGCGTTGA ACATTCGTTT TATTTGGAAT TGCAGTACTT 4364 ||||| .......... .......... .......... .......... .......... .....TACTT 458 CGGACTGAAG CCGGAACAGG CACCTGTGAT CATCATAATG GACGCTGATG AACAAAAGTA 4424 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGGACTGAAG CCGGAACAGG CACCTGTGAT CATCATAATG GACGCTGATG AACAAAAGTA 518 TATTAAGGAC CATGTGGAAC CTGATGCCAT TGCTGCTTAC TTG 4467 |||||||||| |||||||||| |||||||||| |||||||||| ||| TATTAAGGAC CATGTGGAAC CTGATGCCAT TGCTGCTTAC TTG 561 hqPGS_C06HBa0054K13.1-11+_SGN-E253672+ (3405 3410,3509 3694,3810 3935,4130 4264,4360 4467) ******************************************************************************** EST sequence 51 +strand 505 n (File: SGN-E203808+) 1 TATTTCCAGA CCCCTCCGGA GAGAAATTCG AGAACTATTT AACGCTAGCT GAAAAACTGC 61 GAGGCGAGTT CGATTTTGCT CACACTGTTG ATGCTAAACA CCTCCCTCGG GGTGGACCAG 121 TCAACAAGCC CACTCTTCGT CTTCTAAAGC CATTTGATGA ACTCTTTGTT GATTTTGAGG 181 ACTTTGATGT CGATGCAATG GAGAAGTTCA TCTCAGAATC TAGTATTCCT GTTGTTACTA 241 TTTTTGACAA TGACCCAAAC AACCATCCTT ATGTTAACAA GTTCTTCGAA GGCACCAACG 301 CCAAGGCATT GCTATTTGTG AACTTTAGCT CTGAATTTGA TGCTTTTAAG TCCAAGTACA 361 ACGATGTTGC TGTGATTTAC AAAGGGGATG GGGTGAGCTT TCTCTTGGGT GATGTTGAGG 421 CTGGTCAAGG TGCTTTTGAG TACTTCGGAC TGAAGCCGGA ACAGGCACCT GTGATCATCA 481 TAATGGACGC TGATGAACAA AAGTA Predicted gene structure (within gDNA segment 2916 to 4982): Exon 1 3516 3694 ( 179 n); cDNA 1 179 ( 179 n); score: 1.000 Intron 1 3695 3809 ( 115 n); Pd: 0.988 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 2 3810 3935 ( 126 n); cDNA 180 305 ( 126 n); score: 1.000 Intron 2 3936 4129 ( 194 n); Pd: 0.981 (s: 1.00), Pa: 0.965 (s: 1.00) Exon 3 4130 4264 ( 135 n); cDNA 306 440 ( 135 n); score: 1.000 Intron 3 4265 4359 ( 95 n); Pd: 0.997 (s: 1.00), Pa: 0.858 (s: 1.00) Exon 4 4360 4424 ( 65 n); cDNA 441 505 ( 65 n); score: 1.000 MATCH C06HBa0054K13.1-11+ SGN-E203808+ 1.000 505 1.000 C PGS_C06HBa0054K13.1-11+_SGN-E203808+ (3516 3694,3810 3935,4130 4264,4360 4424) Alignment (genomic DNA sequence = upper lines): TATTTCCAGA CCCCTCCGGA GAGAAATTCG AGAACTATTT AACGCTAGCT GAAAAACTGC 3575 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATTTCCAGA CCCCTCCGGA GAGAAATTCG AGAACTATTT AACGCTAGCT GAAAAACTGC 60 GAGGCGAGTT CGATTTTGCT CACACTGTTG ATGCTAAACA CCTCCCTCGG GGTGGACCAG 3635 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGGCGAGTT CGATTTTGCT CACACTGTTG ATGCTAAACA CCTCCCTCGG GGTGGACCAG 120 TCAACAAGCC CACTCTTCGT CTTCTAAAGC CATTTGATGA ACTCTTTGTT GATTTTGAGG 3695 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| TCAACAAGCC CACTCTTCGT CTTCTAAAGC CATTTGATGA ACTCTTTGTT GATTTTGAG. 179 TATTACAGTT ATCTGTGTAT ATTTTTATCT TTGATACTCA TTGTATTATG GTTATGAGGC 3755 .......... .......... .......... .......... .......... .......... 179 TCAACTCTGT CCTATGTTAT CTTTTAATTG GCCATTGATT GTACATACTT GCAGGACTTT 3815 |||||| .......... .......... .......... .......... .......... ....GACTTT 185 GATGTCGATG CAATGGAGAA GTTCATCTCA GAATCTAGTA TTCCTGTTGT TACTATTTTT 3875 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATGTCGATG CAATGGAGAA GTTCATCTCA GAATCTAGTA TTCCTGTTGT TACTATTTTT 245 GACAATGACC CAAACAACCA TCCTTATGTT AACAAGTTCT TCGAAGGCAC CAACGCCAAG 3935 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GACAATGACC CAAACAACCA TCCTTATGTT AACAAGTTCT TCGAAGGCAC CAACGCCAAG 305 GTACTTGATT CTGCGAGCTG TAATGCTTCA ATTTGACCTT ATATTTCAAC GTCAAGCAAT 3995 .......... .......... .......... .......... .......... .......... 305 TCTAGGATCT TCTCATGAAT TTTACAGTTA TATGCTTGTA CTTGTATTAT TTTCTTTTCA 4055 .......... .......... .......... .......... .......... .......... 305 TTCACTAATA TTTGACAATT AACTTCAAAG TTCTAAGAGA TTGATTTGTT TTTTTGACAT 4115 .......... .......... .......... .......... .......... .......... 305 TTGCAAATCT ACAGGCATTG CTATTTGTGA ACTTTAGCTC TGAATTTGAT GCTTTTAAGT 4175 |||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ....GCATTG CTATTTGTGA ACTTTAGCTC TGAATTTGAT GCTTTTAAGT 351 CCAAGTACAA CGATGTTGCT GTGATTTACA AAGGGGATGG GGTGAGCTTT CTCTTGGGTG 4235 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCAAGTACAA CGATGTTGCT GTGATTTACA AAGGGGATGG GGTGAGCTTT CTCTTGGGTG 411 ATGTTGAGGC TGGTCAAGGT GCTTTTGAGG TTGGTTAAAA TTTTCAACTA TCTGATTACA 4295 |||||||||| |||||||||| ||||||||| ATGTTGAGGC TGGTCAAGGT GCTTTTGAG. .......... .......... .......... 440 GTGTCATTGT ATCCATGATC ACGTAAAAAG GCGCGTTGAA CATTCGTTTT ATTTGGAATT 4355 .......... .......... .......... .......... .......... .......... 440 GCAGTACTTC GGACTGAAGC CGGAACAGGC ACCTGTGATC ATCATAATGG ACGCTGATGA 4415 |||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ....TACTTC GGACTGAAGC CGGAACAGGC ACCTGTGATC ATCATAATGG ACGCTGATGA 496 ACAAAAGTA 4424 ||||||||| ACAAAAGTA 505 hqPGS_C06HBa0054K13.1-11+_SGN-E203808+ (3516 3694,3810 3935,4130 4264,4360 4424) ******************************************************************************** EST sequence 25 +strand 404 n (File: SGN-E262546+) 1 AGACCCCTCC GGAGAGAAAT TCGAGAACTA TTTAACGCTA GCTGAAAAAC TGCGAGGCGA 61 GTTCGATTTT GCTCACACTG TTGATGCTAA ACACCTCCCT CGGGGTGGAC CAGTCAACAA 121 GCCCACTCTT CGTCTTCTAA AGCCATTTGA TGAACTCTTT GTTGATTTTG AGGACTTTGA 181 TGTCGATGCA ATGGAAAAGT TCATCTCAGA ATCTAGTATT CCTGTTGTTA CTATTTTTGA 241 CAATGACCCA AACAACCATC CTTATGTTAA CAAGTTCTTC GAAGGCACCA ACGCCAAGGC 301 ATTGCTATTT GTGAACTTTA GCTCTGAATT TGATGCTTTT AAGTCCAAGT ACAACGATGT 361 TGCTGTGATT TACAAAGGGG AATGGGGTGA GCTTTCTCTT GGGT Predicted gene structure (within gDNA segment 2923 to 4844): Exon 1 3523 3694 ( 172 n); cDNA 1 172 ( 172 n); score: 1.000 Intron 1 3695 3809 ( 115 n); Pd: 0.988 (s: 1.00), Pa: 0.999 (s: 0.98) Exon 2 3810 3935 ( 126 n); cDNA 173 298 ( 126 n); score: 0.992 Intron 2 3936 4129 ( 194 n); Pd: 0.981 (s: 1.00), Pa: 0.965 (s: 1.00) Exon 3 4130 4234 ( 105 n); cDNA 299 404 ( 106 n); score: 0.976 MATCH C06HBa0054K13.1-11+ SGN-E262546+ 0.991 403 0.998 C PGS_C06HBa0054K13.1-11+_SGN-E262546+ (3523 3694,3810 3935,4130 4234) Alignment (genomic DNA sequence = upper lines): AGACCCCTCC GGAGAGAAAT TCGAGAACTA TTTAACGCTA GCTGAAAAAC TGCGAGGCGA 3582 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGACCCCTCC GGAGAGAAAT TCGAGAACTA TTTAACGCTA GCTGAAAAAC TGCGAGGCGA 60 GTTCGATTTT GCTCACACTG TTGATGCTAA ACACCTCCCT CGGGGTGGAC CAGTCAACAA 3642 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTCGATTTT GCTCACACTG TTGATGCTAA ACACCTCCCT CGGGGTGGAC CAGTCAACAA 120 GCCCACTCTT CGTCTTCTAA AGCCATTTGA TGAACTCTTT GTTGATTTTG AGGTATTACA 3702 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| || GCCCACTCTT CGTCTTCTAA AGCCATTTGA TGAACTCTTT GTTGATTTTG AG........ 172 GTTATCTGTG TATATTTTTA TCTTTGATAC TCATTGTATT ATGGTTATGA GGCTCAACTC 3762 .......... .......... .......... .......... .......... .......... 172 TGTCCTATGT TATCTTTTAA TTGGCCATTG ATTGTACATA CTTGCAGGAC TTTGATGTCG 3822 ||| |||||||||| .......... .......... .......... .......... .......GAC TTTGATGTCG 185 ATGCAATGGA GAAGTTCATC TCAGAATCTA GTATTCCTGT TGTTACTATT TTTGACAATG 3882 |||||||||| ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGCAATGGA AAAGTTCATC TCAGAATCTA GTATTCCTGT TGTTACTATT TTTGACAATG 245 ACCCAAACAA CCATCCTTAT GTTAACAAGT TCTTCGAAGG CACCAACGCC AAGGTACTTG 3942 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||| ACCCAAACAA CCATCCTTAT GTTAACAAGT TCTTCGAAGG CACCAACGCC AAG....... 298 ATTCTGCGAG CTGTAATGCT TCAATTTGAC CTTATATTTC AACGTCAAGC AATTCTAGGA 4002 .......... .......... .......... .......... .......... .......... 298 TCTTCTCATG AATTTTACAG TTATATGCTT GTACTTGTAT TATTTTCTTT TCATTCACTA 4062 .......... .......... .......... .......... .......... .......... 298 ATATTTGACA ATTAACTTCA AAGTTCTAAG AGATTGATTT GTTTTTTTGA CATTTGCAAA 4122 .......... .......... .......... .......... .......... .......... 298 TCTACAGGCA TTGCTATTTG TGAACTTTAG CTCTGAATTT GATGCTTTTA AGTCCAAGTA 4182 ||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......GCA TTGCTATTTG TGAACTTTAG CTCTGAATTT GATGCTTTTA AGTCCAAGTA 351 CAACGATGTT GCTGTGATTT ACAAAGGGG- ATGGGGTGAG CTTTCTCTTG GGT 4234 |||||||||| |||||||||| ||||||||| |||||||||| |||||||||| ||| CAACGATGTT GCTGTGATTT ACAAAGGGGA ATGGGGTGAG CTTTCTCTTG GGT 404 hqPGS_C06HBa0054K13.1-11+_SGN-E262546+ (3523 3694,3810 3935,4130 4234) ******************************************************************************** EST sequence 119 +strand 509 n (File: SGN-E209252+) 1 GAAATTCGAG AACTATTTAA CGCTAGCTGA AAAACTGCGA GGCGAGTTCG ATTTTGCTCA 61 CACTGTTGAT GCTAAACACC TCCCTCGGGG TGGACCAGTC AACAAGCCCA CTCTTCGTCT 121 TCTAAAGCCA TTTGATGAAC TCTTTGTTGA TTTTGAGGAC TTTGATGTCG ATGCAATGGA 181 GAAGTTCATC TCAGAATCTA GTATTCCTGT TGTTACTATT TTTGACAATG ACCCAAACAA 241 CCATCCTTAT GTTAACAAGT TCTTCGAAGG CACCAACGCC AAGGCATTGC TATTTGTGAA 301 CTTTAGCTCT GAATTTGATG CTTTTAAGTC CAAGTACAAC GATGTTGCTG TGATTTACAA 361 AGGGGATGGG GTGAGCTTTC TCTTGGGTGA TGTTGAGGCT GGTCAAGGTG CTTTTGAGTA 421 CTTCGGACTG AAGCCGGAAC AGGCACCTGT GATCATCATA ATGGACGCTG ATGAACAAAA 481 GTATATTAAT GACCATGTGG AACCTGATG Predicted gene structure (within gDNA segment 2938 to 4982): Exon 1 3538 3694 ( 157 n); cDNA 1 157 ( 157 n); score: 1.000 Intron 1 3695 3809 ( 115 n); Pd: 0.988 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 2 3810 3935 ( 126 n); cDNA 158 283 ( 126 n); score: 1.000 Intron 2 3936 4129 ( 194 n); Pd: 0.981 (s: 1.00), Pa: 0.965 (s: 1.00) Exon 3 4130 4264 ( 135 n); cDNA 284 418 ( 135 n); score: 1.000 Intron 3 4265 4359 ( 95 n); Pd: 0.997 (s: 1.00), Pa: 0.858 (s: 1.00) Exon 4 4360 4450 ( 91 n); cDNA 419 509 ( 91 n); score: 0.989 MATCH C06HBa0054K13.1-11+ SGN-E209252+ 0.998 509 1.000 C PGS_C06HBa0054K13.1-11+_SGN-E209252+ (3538 3694,3810 3935,4130 4264,4360 4450) Alignment (genomic DNA sequence = upper lines): GAAATTCGAG AACTATTTAA CGCTAGCTGA AAAACTGCGA GGCGAGTTCG ATTTTGCTCA 3597 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAATTCGAG AACTATTTAA CGCTAGCTGA AAAACTGCGA GGCGAGTTCG ATTTTGCTCA 60 CACTGTTGAT GCTAAACACC TCCCTCGGGG TGGACCAGTC AACAAGCCCA CTCTTCGTCT 3657 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CACTGTTGAT GCTAAACACC TCCCTCGGGG TGGACCAGTC AACAAGCCCA CTCTTCGTCT 120 TCTAAAGCCA TTTGATGAAC TCTTTGTTGA TTTTGAGGTA TTACAGTTAT CTGTGTATAT 3717 |||||||||| |||||||||| |||||||||| ||||||| TCTAAAGCCA TTTGATGAAC TCTTTGTTGA TTTTGAG... .......... .......... 157 TTTTATCTTT GATACTCATT GTATTATGGT TATGAGGCTC AACTCTGTCC TATGTTATCT 3777 .......... .......... .......... .......... .......... .......... 157 TTTAATTGGC CATTGATTGT ACATACTTGC AGGACTTTGA TGTCGATGCA ATGGAGAAGT 3837 |||||||| |||||||||| |||||||||| .......... .......... .......... ..GACTTTGA TGTCGATGCA ATGGAGAAGT 185 TCATCTCAGA ATCTAGTATT CCTGTTGTTA CTATTTTTGA CAATGACCCA AACAACCATC 3897 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCATCTCAGA ATCTAGTATT CCTGTTGTTA CTATTTTTGA CAATGACCCA AACAACCATC 245 CTTATGTTAA CAAGTTCTTC GAAGGCACCA ACGCCAAGGT ACTTGATTCT GCGAGCTGTA 3957 |||||||||| |||||||||| |||||||||| |||||||| CTTATGTTAA CAAGTTCTTC GAAGGCACCA ACGCCAAG.. .......... .......... 283 ATGCTTCAAT TTGACCTTAT ATTTCAACGT CAAGCAATTC TAGGATCTTC TCATGAATTT 4017 .......... .......... .......... .......... .......... .......... 283 TACAGTTATA TGCTTGTACT TGTATTATTT TCTTTTCATT CACTAATATT TGACAATTAA 4077 .......... .......... .......... .......... .......... .......... 283 CTTCAAAGTT CTAAGAGATT GATTTGTTTT TTTGACATTT GCAAATCTAC AGGCATTGCT 4137 |||||||| .......... .......... .......... .......... .......... ..GCATTGCT 291 ATTTGTGAAC TTTAGCTCTG AATTTGATGC TTTTAAGTCC AAGTACAACG ATGTTGCTGT 4197 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTTGTGAAC TTTAGCTCTG AATTTGATGC TTTTAAGTCC AAGTACAACG ATGTTGCTGT 351 GATTTACAAA GGGGATGGGG TGAGCTTTCT CTTGGGTGAT GTTGAGGCTG GTCAAGGTGC 4257 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATTTACAAA GGGGATGGGG TGAGCTTTCT CTTGGGTGAT GTTGAGGCTG GTCAAGGTGC 411 TTTTGAGGTT GGTTAAAATT TTCAACTATC TGATTACAGT GTCATTGTAT CCATGATCAC 4317 ||||||| TTTTGAG... .......... .......... .......... .......... .......... 418 GTAAAAAGGC GCGTTGAACA TTCGTTTTAT TTGGAATTGC AGTACTTCGG ACTGAAGCCG 4377 |||||||| |||||||||| .......... .......... .......... .......... ..TACTTCGG ACTGAAGCCG 436 GAACAGGCAC CTGTGATCAT CATAATGGAC GCTGATGAAC AAAAGTATAT TAAGGACCAT 4437 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||| |||||| GAACAGGCAC CTGTGATCAT CATAATGGAC GCTGATGAAC AAAAGTATAT TAATGACCAT 496 GTGGAACCTG ATG 4450 |||||||||| ||| GTGGAACCTG ATG 509 hqPGS_C06HBa0054K13.1-11+_SGN-E209252+ (3538 3694,3810 3935,4130 4264,4360 4450) ******************************************************************************** EST sequence 52 +strand 679 n (File: SGN-E215005+) 1 AATTCGAGAA CTATTTAACG CTAGCTGAAA AACTGCGAGG CGAGTTCGAT TTTGCTCACA 61 CTGTTGATGC TAAACACCTC CCTCGGGGTG GACCAGTCAA CAAGCCCACT CTTCGTCTTC 121 TAAAGCCATT TGATGAACTC TTTGTTGATT TTGAGGACTT TGATGTCGAT GCAATGGAGA 181 AGTTCATCTC AGAATCTAGT ATTCCTGTTG TTACTATTTT TGACAATGAC CCAAACAACC 241 ATCCTTATGT TAACAAGTTC TTCGAAGGCA CCAACGCCAA GGCATTGCTA TTTGTGAACT 301 TTAGCTCTGA ATTTGATGCT TTTAAGTCCA AGTACAACGA TGTTGCTGTG ATTTACAAAG 361 GGGATGGGGT GAGCTTTCTC TTGGGTGATG TTGAGGCTGG TCAAGGTGCT TTTGAGTACT 421 TCGGACTGAA GCCGGAACAG GCACCTGTGA TCATCATAAT GGACGCTGAT GAACAAAAGT 481 ATATTAAGGA CCATGTGGAA CCTGATGCCA TTGCTGCTTA CTTGAAGGAT TACAAGGAAG 541 GAAAACTGAA GCCACATGTG AAGTCAGAGC CCATCCCTGA AGTCAATGAC GAACCTGTTA 601 AGGTGGTTGT TAGGGATACC CTCCAGGATA TGGTTTACAA ATCGGGAAAA AATGTGCTGT 661 TAGAGTTCTA TGCACCTTG Predicted gene structure (within gDNA segment 2940 to 4982): Exon 1 3540 3694 ( 155 n); cDNA 1 155 ( 155 n); score: 1.000 Intron 1 3695 3809 ( 115 n); Pd: 0.988 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 2 3810 3935 ( 126 n); cDNA 156 281 ( 126 n); score: 1.000 Intron 2 3936 4129 ( 194 n); Pd: 0.981 (s: 1.00), Pa: 0.965 (s: 1.00) Exon 3 4130 4264 ( 135 n); cDNA 282 416 ( 135 n); score: 1.000 Intron 3 4265 4359 ( 95 n); Pd: 0.997 (s: 1.00), Pa: 0.858 (s: 1.00) Exon 4 4360 4479 ( 120 n); cDNA 417 536 ( 120 n); score: 1.000 Intron 4 4480 4604 ( 125 n); Pd: 1.000 (s: 1.00), Pa: 0.984 (s: 1.00) Exon 5 4605 4722 ( 118 n); cDNA 537 654 ( 118 n); score: 1.000 MATCH C06HBa0054K13.1-11+ SGN-E215005+ 1.000 654 0.963 C PGS_C06HBa0054K13.1-11+_SGN-E215005+ (3540 3694,3810 3935,4130 4264,4360 4479,4605 4722) Alignment (genomic DNA sequence = upper lines): AATTCGAGAA CTATTTAACG CTAGCTGAAA AACTGCGAGG CGAGTTCGAT TTTGCTCACA 3599 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATTCGAGAA CTATTTAACG CTAGCTGAAA AACTGCGAGG CGAGTTCGAT TTTGCTCACA 60 CTGTTGATGC TAAACACCTC CCTCGGGGTG GACCAGTCAA CAAGCCCACT CTTCGTCTTC 3659 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGTTGATGC TAAACACCTC CCTCGGGGTG GACCAGTCAA CAAGCCCACT CTTCGTCTTC 120 TAAAGCCATT TGATGAACTC TTTGTTGATT TTGAGGTATT ACAGTTATCT GTGTATATTT 3719 |||||||||| |||||||||| |||||||||| ||||| TAAAGCCATT TGATGAACTC TTTGTTGATT TTGAG..... .......... .......... 155 TTATCTTTGA TACTCATTGT ATTATGGTTA TGAGGCTCAA CTCTGTCCTA TGTTATCTTT 3779 .......... .......... .......... .......... .......... .......... 155 TAATTGGCCA TTGATTGTAC ATACTTGCAG GACTTTGATG TCGATGCAAT GGAGAAGTTC 3839 |||||||||| |||||||||| |||||||||| .......... .......... .......... GACTTTGATG TCGATGCAAT GGAGAAGTTC 185 ATCTCAGAAT CTAGTATTCC TGTTGTTACT ATTTTTGACA ATGACCCAAA CAACCATCCT 3899 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCTCAGAAT CTAGTATTCC TGTTGTTACT ATTTTTGACA ATGACCCAAA CAACCATCCT 245 TATGTTAACA AGTTCTTCGA AGGCACCAAC GCCAAGGTAC TTGATTCTGC GAGCTGTAAT 3959 |||||||||| |||||||||| |||||||||| |||||| TATGTTAACA AGTTCTTCGA AGGCACCAAC GCCAAG.... .......... .......... 281 GCTTCAATTT GACCTTATAT TTCAACGTCA AGCAATTCTA GGATCTTCTC ATGAATTTTA 4019 .......... .......... .......... .......... .......... .......... 281 CAGTTATATG CTTGTACTTG TATTATTTTC TTTTCATTCA CTAATATTTG ACAATTAACT 4079 .......... .......... .......... .......... .......... .......... 281 TCAAAGTTCT AAGAGATTGA TTTGTTTTTT TGACATTTGC AAATCTACAG GCATTGCTAT 4139 |||||||||| .......... .......... .......... .......... .......... GCATTGCTAT 291 TTGTGAACTT TAGCTCTGAA TTTGATGCTT TTAAGTCCAA GTACAACGAT GTTGCTGTGA 4199 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGTGAACTT TAGCTCTGAA TTTGATGCTT TTAAGTCCAA GTACAACGAT GTTGCTGTGA 351 TTTACAAAGG GGATGGGGTG AGCTTTCTCT TGGGTGATGT TGAGGCTGGT CAAGGTGCTT 4259 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTACAAAGG GGATGGGGTG AGCTTTCTCT TGGGTGATGT TGAGGCTGGT CAAGGTGCTT 411 TTGAGGTTGG TTAAAATTTT CAACTATCTG ATTACAGTGT CATTGTATCC ATGATCACGT 4319 ||||| TTGAG..... .......... .......... .......... .......... .......... 416 AAAAAGGCGC GTTGAACATT CGTTTTATTT GGAATTGCAG TACTTCGGAC TGAAGCCGGA 4379 |||||||||| |||||||||| .......... .......... .......... .......... TACTTCGGAC TGAAGCCGGA 436 ACAGGCACCT GTGATCATCA TAATGGACGC TGATGAACAA AAGTATATTA AGGACCATGT 4439 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACAGGCACCT GTGATCATCA TAATGGACGC TGATGAACAA AAGTATATTA AGGACCATGT 496 GGAACCTGAT GCCATTGCTG CTTACTTGAA GGATTACAAG GTGATGCATC CTCTTCTTTT 4499 |||||||||| |||||||||| |||||||||| |||||||||| GGAACCTGAT GCCATTGCTG CTTACTTGAA GGATTACAAG .......... .......... 536 TCTTGGATAT ATTTTGGAAT GAAAGCGTTG TTAATTGTGA ACAATATTCT GCACGGAAGG 4559 .......... .......... .......... .......... .......... .......... 536 AAAGGCTTAC TAACCTTTTT CCTCTAATTT TCCACATTGT TACAGGAAGG AAAACTGAAG 4619 ||||| |||||||||| .......... .......... .......... .......... .....GAAGG AAAACTGAAG 551 CCACATGTGA AGTCAGAGCC CATCCCTGAA GTCAATGACG AACCTGTTAA GGTGGTTGTT 4679 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCACATGTGA AGTCAGAGCC CATCCCTGAA GTCAATGACG AACCTGTTAA GGTGGTTGTT 611 AGGGATACCC TCCAGGATAT GGTTTACAAA TCGGGAAAAA ATG 4722 |||||||||| |||||||||| |||||||||| |||||||||| ||| AGGGATACCC TCCAGGATAT GGTTTACAAA TCGGGAAAAA ATG 654 hqPGS_C06HBa0054K13.1-11+_SGN-E215005+ (3540 3694,3810 3935,4130 4264,4360 4479,4605 4722) ******************************************************************************** EST sequence 56 +strand 511 n (File: SGN-E323627+) 1 TTTAACGCTA GCTGAAAAAC TGCGAGGCGA GTTCGATTTT GCTCACACTG TTGATGCTAA 61 ACACCTCCCT CGGGGTGGAC CAGTCAACAA GCCCACTCTT CGTCTTCTAA AGCCATTTGA 121 TGAACTCTTT GTTGATTTTG AGGACTTTGA TGTCGATGCA ATGGAGAAGT TCATCTCAGA 181 ATCTAGTATT CCTGTTGTTA CTATTTTTGA CAATGACCCA AACAACCATC CTTATGTTAA 241 CAAGTTCTTC GAAGGCACCA ACGCCAAGGC ATTGCTATTT GTGAACTTTA GCTCTGAATT 301 TGATGCTTTT AAGTCCAAGT ACAACGATGT TGCTGTGATT TACAAAGGGG ATGGGGTGAG 361 CTTTCTCTTG GGTGATGTTG AGGCTGGTCA AGGTGCTTTT GAGTACTTCG GACTGAAGCC 421 GGAACAGGCA CCTGTGATCA TCATAATGGA CGCTGATGAA CAAAAGTATA TTAAGGACCA 481 TGTGGAACCT GATGCCATTG CTGCTTACTT G Predicted gene structure (within gDNA segment 2953 to 4982): Exon 1 3553 3694 ( 142 n); cDNA 1 142 ( 142 n); score: 1.000 Intron 1 3695 3809 ( 115 n); Pd: 0.988 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 2 3810 3935 ( 126 n); cDNA 143 268 ( 126 n); score: 1.000 Intron 2 3936 4129 ( 194 n); Pd: 0.981 (s: 1.00), Pa: 0.965 (s: 1.00) Exon 3 4130 4264 ( 135 n); cDNA 269 403 ( 135 n); score: 1.000 Intron 3 4265 4359 ( 95 n); Pd: 0.997 (s: 1.00), Pa: 0.858 (s: 1.00) Exon 4 4360 4467 ( 108 n); cDNA 404 511 ( 108 n); score: 1.000 MATCH C06HBa0054K13.1-11+ SGN-E323627+ 1.000 511 1.000 C PGS_C06HBa0054K13.1-11+_SGN-E323627+ (3553 3694,3810 3935,4130 4264,4360 4467) Alignment (genomic DNA sequence = upper lines): TTTAACGCTA GCTGAAAAAC TGCGAGGCGA GTTCGATTTT GCTCACACTG TTGATGCTAA 3612 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTAACGCTA GCTGAAAAAC TGCGAGGCGA GTTCGATTTT GCTCACACTG TTGATGCTAA 60 ACACCTCCCT CGGGGTGGAC CAGTCAACAA GCCCACTCTT CGTCTTCTAA AGCCATTTGA 3672 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACACCTCCCT CGGGGTGGAC CAGTCAACAA GCCCACTCTT CGTCTTCTAA AGCCATTTGA 120 TGAACTCTTT GTTGATTTTG AGGTATTACA GTTATCTGTG TATATTTTTA TCTTTGATAC 3732 |||||||||| |||||||||| || TGAACTCTTT GTTGATTTTG AG........ .......... .......... .......... 142 TCATTGTATT ATGGTTATGA GGCTCAACTC TGTCCTATGT TATCTTTTAA TTGGCCATTG 3792 .......... .......... .......... .......... .......... .......... 142 ATTGTACATA CTTGCAGGAC TTTGATGTCG ATGCAATGGA GAAGTTCATC TCAGAATCTA 3852 ||| |||||||||| |||||||||| |||||||||| |||||||||| .......... .......GAC TTTGATGTCG ATGCAATGGA GAAGTTCATC TCAGAATCTA 185 GTATTCCTGT TGTTACTATT TTTGACAATG ACCCAAACAA CCATCCTTAT GTTAACAAGT 3912 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTATTCCTGT TGTTACTATT TTTGACAATG ACCCAAACAA CCATCCTTAT GTTAACAAGT 245 TCTTCGAAGG CACCAACGCC AAGGTACTTG ATTCTGCGAG CTGTAATGCT TCAATTTGAC 3972 |||||||||| |||||||||| ||| TCTTCGAAGG CACCAACGCC AAG....... .......... .......... .......... 268 CTTATATTTC AACGTCAAGC AATTCTAGGA TCTTCTCATG AATTTTACAG TTATATGCTT 4032 .......... .......... .......... .......... .......... .......... 268 GTACTTGTAT TATTTTCTTT TCATTCACTA ATATTTGACA ATTAACTTCA AAGTTCTAAG 4092 .......... .......... .......... .......... .......... .......... 268 AGATTGATTT GTTTTTTTGA CATTTGCAAA TCTACAGGCA TTGCTATTTG TGAACTTTAG 4152 ||| |||||||||| |||||||||| .......... .......... .......... .......GCA TTGCTATTTG TGAACTTTAG 291 CTCTGAATTT GATGCTTTTA AGTCCAAGTA CAACGATGTT GCTGTGATTT ACAAAGGGGA 4212 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCTGAATTT GATGCTTTTA AGTCCAAGTA CAACGATGTT GCTGTGATTT ACAAAGGGGA 351 TGGGGTGAGC TTTCTCTTGG GTGATGTTGA GGCTGGTCAA GGTGCTTTTG AGGTTGGTTA 4272 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| || TGGGGTGAGC TTTCTCTTGG GTGATGTTGA GGCTGGTCAA GGTGCTTTTG AG........ 403 AAATTTTCAA CTATCTGATT ACAGTGTCAT TGTATCCATG ATCACGTAAA AAGGCGCGTT 4332 .......... .......... .......... .......... .......... .......... 403 GAACATTCGT TTTATTTGGA ATTGCAGTAC TTCGGACTGA AGCCGGAACA GGCACCTGTG 4392 ||| |||||||||| |||||||||| |||||||||| .......... .......... .......TAC TTCGGACTGA AGCCGGAACA GGCACCTGTG 436 ATCATCATAA TGGACGCTGA TGAACAAAAG TATATTAAGG ACCATGTGGA ACCTGATGCC 4452 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCATCATAA TGGACGCTGA TGAACAAAAG TATATTAAGG ACCATGTGGA ACCTGATGCC 496 ATTGCTGCTT ACTTG 4467 |||||||||| ||||| ATTGCTGCTT ACTTG 511 hqPGS_C06HBa0054K13.1-11+_SGN-E323627+ (3553 3694,3810 3935,4130 4264,4360 4467) ******************************************************************************** EST sequence 32 +strand 623 n (File: SGN-E213242+) 1 TAGCTGAAAA ACTGCGAGGC GAGTTCGATT TTGCTCACAC TGTTGATGCT AAACACCTCC 61 CTCGGGGTGG ACCAGTCAAC AAGCCCACTC TTCGTCTTCT AAAGCCATTT GATGAACTCT 121 TTGTTGATTT TGAGGACTTT GATGTCGATG CAATGGAGAA GTTCATCTCA GAATCTAGTA 181 TTCCTGTTGT TACTATTTTT GACAATGACC CAAACAACCA TCCTTATGTT AACAAGTTCT 241 TCGAAGGCAC CAACGCCAAG GCATTGCTAT TTGTGAACTT TAGCTCTGAA TTTGATGCTT 301 TTAAGTCCAA GTACAACGAT GTTGCTGTGA TTTACAAAGG GGATGGGGTG AGCTTTCTCT 361 TGGGTGATGT TGAGGCTGGT CAAGGTGCTT TTGAGTACTT CGGACTGAAG CCGGAACAGG 421 CACCTGTGAT CATCATAATG GACGCTGATG AACAAAAGTA TATTAAGGAC CATGTGGAAC 481 CTGATGCCAT TGCTGCTTAC TTGAAGGATT ACAAGGAAGG AAAACTGAAG CCACATGTGA 541 AGTCAGAGCC CATCCCTGAA GTCAATGACG AACCTGTTAA GGTGGTTGTT AGGGATACCC 601 TCCAGGATAT GGTTTTACAA TCG Predicted gene structure (within gDNA segment 2961 to 4982): Exon 1 3561 3694 ( 134 n); cDNA 1 134 ( 134 n); score: 1.000 Intron 1 3695 3809 ( 115 n); Pd: 0.988 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 2 3810 3935 ( 126 n); cDNA 135 260 ( 126 n); score: 1.000 Intron 2 3936 4129 ( 194 n); Pd: 0.981 (s: 1.00), Pa: 0.965 (s: 1.00) Exon 3 4130 4264 ( 135 n); cDNA 261 395 ( 135 n); score: 1.000 Intron 3 4265 4359 ( 95 n); Pd: 0.997 (s: 1.00), Pa: 0.858 (s: 1.00) Exon 4 4360 4479 ( 120 n); cDNA 396 515 ( 120 n); score: 1.000 Intron 4 4480 4604 ( 125 n); Pd: 1.000 (s: 1.00), Pa: 0.984 (s: 1.00) Exon 5 4605 4712 ( 108 n); cDNA 516 623 ( 108 n); score: 0.972 MATCH C06HBa0054K13.1-11+ SGN-E213242+ 0.995 623 1.000 C PGS_C06HBa0054K13.1-11+_SGN-E213242+ (3561 3694,3810 3935,4130 4264,4360 4479,4605 4712) Alignment (genomic DNA sequence = upper lines): TAGCTGAAAA ACTGCGAGGC GAGTTCGATT TTGCTCACAC TGTTGATGCT AAACACCTCC 3620 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAGCTGAAAA ACTGCGAGGC GAGTTCGATT TTGCTCACAC TGTTGATGCT AAACACCTCC 60 CTCGGGGTGG ACCAGTCAAC AAGCCCACTC TTCGTCTTCT AAAGCCATTT GATGAACTCT 3680 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCGGGGTGG ACCAGTCAAC AAGCCCACTC TTCGTCTTCT AAAGCCATTT GATGAACTCT 120 TTGTTGATTT TGAGGTATTA CAGTTATCTG TGTATATTTT TATCTTTGAT ACTCATTGTA 3740 |||||||||| |||| TTGTTGATTT TGAG...... .......... .......... .......... .......... 134 TTATGGTTAT GAGGCTCAAC TCTGTCCTAT GTTATCTTTT AATTGGCCAT TGATTGTACA 3800 .......... .......... .......... .......... .......... .......... 134 TACTTGCAGG ACTTTGATGT CGATGCAATG GAGAAGTTCA TCTCAGAATC TAGTATTCCT 3860 | |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .........G ACTTTGATGT CGATGCAATG GAGAAGTTCA TCTCAGAATC TAGTATTCCT 185 GTTGTTACTA TTTTTGACAA TGACCCAAAC AACCATCCTT ATGTTAACAA GTTCTTCGAA 3920 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTGTTACTA TTTTTGACAA TGACCCAAAC AACCATCCTT ATGTTAACAA GTTCTTCGAA 245 GGCACCAACG CCAAGGTACT TGATTCTGCG AGCTGTAATG CTTCAATTTG ACCTTATATT 3980 |||||||||| ||||| GGCACCAACG CCAAG..... .......... .......... .......... .......... 260 TCAACGTCAA GCAATTCTAG GATCTTCTCA TGAATTTTAC AGTTATATGC TTGTACTTGT 4040 .......... .......... .......... .......... .......... .......... 260 ATTATTTTCT TTTCATTCAC TAATATTTGA CAATTAACTT CAAAGTTCTA AGAGATTGAT 4100 .......... .......... .......... .......... .......... .......... 260 TTGTTTTTTT GACATTTGCA AATCTACAGG CATTGCTATT TGTGAACTTT AGCTCTGAAT 4160 | |||||||||| |||||||||| |||||||||| .......... .......... .........G CATTGCTATT TGTGAACTTT AGCTCTGAAT 291 TTGATGCTTT TAAGTCCAAG TACAACGATG TTGCTGTGAT TTACAAAGGG GATGGGGTGA 4220 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGATGCTTT TAAGTCCAAG TACAACGATG TTGCTGTGAT TTACAAAGGG GATGGGGTGA 351 GCTTTCTCTT GGGTGATGTT GAGGCTGGTC AAGGTGCTTT TGAGGTTGGT TAAAATTTTC 4280 |||||||||| |||||||||| |||||||||| |||||||||| |||| GCTTTCTCTT GGGTGATGTT GAGGCTGGTC AAGGTGCTTT TGAG...... .......... 395 AACTATCTGA TTACAGTGTC ATTGTATCCA TGATCACGTA AAAAGGCGCG TTGAACATTC 4340 .......... .......... .......... .......... .......... .......... 395 GTTTTATTTG GAATTGCAGT ACTTCGGACT GAAGCCGGAA CAGGCACCTG TGATCATCAT 4400 | |||||||||| |||||||||| |||||||||| |||||||||| .......... .........T ACTTCGGACT GAAGCCGGAA CAGGCACCTG TGATCATCAT 436 AATGGACGCT GATGAACAAA AGTATATTAA GGACCATGTG GAACCTGATG CCATTGCTGC 4460 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATGGACGCT GATGAACAAA AGTATATTAA GGACCATGTG GAACCTGATG CCATTGCTGC 496 TTACTTGAAG GATTACAAGG TGATGCATCC TCTTCTTTTT CTTGGATATA TTTTGGAATG 4520 |||||||||| ||||||||| TTACTTGAAG GATTACAAG. .......... .......... .......... .......... 515 AAAGCGTTGT TAATTGTGAA CAATATTCTG CACGGAAGGA AAGGCTTACT AACCTTTTTC 4580 .......... .......... .......... .......... .......... .......... 515 CTCTAATTTT CCACATTGTT ACAGGAAGGA AAACTGAAGC CACATGTGAA GTCAGAGCCC 4640 |||||| |||||||||| |||||||||| |||||||||| .......... .......... ....GAAGGA AAACTGAAGC CACATGTGAA GTCAGAGCCC 551 ATCCCTGAAG TCAATGACGA ACCTGTTAAG GTGGTTGTTA GGGATACCCT CCAGGATATG 4700 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCCCTGAAG TCAATGACGA ACCTGTTAAG GTGGTTGTTA GGGATACCCT CCAGGATATG 611 GTTTACAAAT CG 4712 |||| ||| || GTTTTACAAT CG 623 hqPGS_C06HBa0054K13.1-11+_SGN-E213242+ (3561 3694,3810 3935,4130 4264,4360 4479,4605 4712) ******************************************************************************** EST sequence 69 +strand 527 n (File: SGN-E206447+) 1 TAGCTGAAAA ACTGCGAGGC GAGTTCGATT TTGCTCACAG TGCTGATGCT GAACACCTCC 61 CTCGGGGTGG ACCAGTCAAC AAGCCCACTC TTCGTCTTCT AAAGCCATTT GATGAACTCT 121 TTGTTGATTA TGAGGACTTT GATGTCGATG CAATGGAGAA GTTCATCTCA GAATCTAGTA 181 TTCCTGTTGT TACTATTTTT GACAATGACC CAAACAACCA TCCTTATGTT AACAAGTTCT 241 TCGAAGGCAC CAACGCCAAG GCATTGCTAT TTGTGAACTT TAGCTCTGAA TATGATGCTT 301 TTAAGTCCAA GTACAACGAT GTTGCTGTGA TTTACAAAGG GGATGGGGTG AGCTTTCTCT 361 TGGGTGATGT TGAGGCTGGT CAAGGTGCTT TTGAGTACTT CGGACTGAAG CCGGAACAGG 421 CACCTGTGAT CATCATAATG GACGCTGATG AACAAAAGTA TATTAAGGAC CATGTGGAAC 481 CTGATGCCAT TGCTGCTTAC TTGAAAGATT ACAAGGAAGG AAAACTG Predicted gene structure (within gDNA segment 2961 to 4982): Exon 1 3561 3694 ( 134 n); cDNA 1 134 ( 134 n); score: 0.970 Intron 1 3695 3809 ( 115 n); Pd: 0.988 (s: 0.98), Pa: 0.999 (s: 1.00) Exon 2 3810 3935 ( 126 n); cDNA 135 260 ( 126 n); score: 1.000 Intron 2 3936 4129 ( 194 n); Pd: 0.981 (s: 1.00), Pa: 0.965 (s: 0.98) Exon 3 4130 4264 ( 135 n); cDNA 261 395 ( 135 n); score: 0.993 Intron 3 4265 4359 ( 95 n); Pd: 0.997 (s: 1.00), Pa: 0.858 (s: 1.00) Exon 4 4360 4479 ( 120 n); cDNA 396 515 ( 120 n); score: 0.992 Intron 4 4480 4604 ( 125 n); Pd: 1.000 (s: 0.98), Pa: 0.984 (s: 0) Exon 5 4605 4616 ( 12 n); cDNA 516 527 ( 12 n); score: 1.000 MATCH C06HBa0054K13.1-11+ SGN-E206447+ 0.988 527 1.000 C PGS_C06HBa0054K13.1-11+_SGN-E206447+ (3561 3694,3810 3935,4130 4264,4360 4479,4605 4616) Alignment (genomic DNA sequence = upper lines): TAGCTGAAAA ACTGCGAGGC GAGTTCGATT TTGCTCACAC TGTTGATGCT AAACACCTCC 3620 |||||||||| |||||||||| |||||||||| ||||||||| || ||||||| ||||||||| TAGCTGAAAA ACTGCGAGGC GAGTTCGATT TTGCTCACAG TGCTGATGCT GAACACCTCC 60 CTCGGGGTGG ACCAGTCAAC AAGCCCACTC TTCGTCTTCT AAAGCCATTT GATGAACTCT 3680 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCGGGGTGG ACCAGTCAAC AAGCCCACTC TTCGTCTTCT AAAGCCATTT GATGAACTCT 120 TTGTTGATTT TGAGGTATTA CAGTTATCTG TGTATATTTT TATCTTTGAT ACTCATTGTA 3740 ||||||||| |||| TTGTTGATTA TGAG...... .......... .......... .......... .......... 134 TTATGGTTAT GAGGCTCAAC TCTGTCCTAT GTTATCTTTT AATTGGCCAT TGATTGTACA 3800 .......... .......... .......... .......... .......... .......... 134 TACTTGCAGG ACTTTGATGT CGATGCAATG GAGAAGTTCA TCTCAGAATC TAGTATTCCT 3860 | |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .........G ACTTTGATGT CGATGCAATG GAGAAGTTCA TCTCAGAATC TAGTATTCCT 185 GTTGTTACTA TTTTTGACAA TGACCCAAAC AACCATCCTT ATGTTAACAA GTTCTTCGAA 3920 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTGTTACTA TTTTTGACAA TGACCCAAAC AACCATCCTT ATGTTAACAA GTTCTTCGAA 245 GGCACCAACG CCAAGGTACT TGATTCTGCG AGCTGTAATG CTTCAATTTG ACCTTATATT 3980 |||||||||| ||||| GGCACCAACG CCAAG..... .......... .......... .......... .......... 260 TCAACGTCAA GCAATTCTAG GATCTTCTCA TGAATTTTAC AGTTATATGC TTGTACTTGT 4040 .......... .......... .......... .......... .......... .......... 260 ATTATTTTCT TTTCATTCAC TAATATTTGA CAATTAACTT CAAAGTTCTA AGAGATTGAT 4100 .......... .......... .......... .......... .......... .......... 260 TTGTTTTTTT GACATTTGCA AATCTACAGG CATTGCTATT TGTGAACTTT AGCTCTGAAT 4160 | |||||||||| |||||||||| |||||||||| .......... .......... .........G CATTGCTATT TGTGAACTTT AGCTCTGAAT 291 TTGATGCTTT TAAGTCCAAG TACAACGATG TTGCTGTGAT TTACAAAGGG GATGGGGTGA 4220 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGATGCTTT TAAGTCCAAG TACAACGATG TTGCTGTGAT TTACAAAGGG GATGGGGTGA 351 GCTTTCTCTT GGGTGATGTT GAGGCTGGTC AAGGTGCTTT TGAGGTTGGT TAAAATTTTC 4280 |||||||||| |||||||||| |||||||||| |||||||||| |||| GCTTTCTCTT GGGTGATGTT GAGGCTGGTC AAGGTGCTTT TGAG...... .......... 395 AACTATCTGA TTACAGTGTC ATTGTATCCA TGATCACGTA AAAAGGCGCG TTGAACATTC 4340 .......... .......... .......... .......... .......... .......... 395 GTTTTATTTG GAATTGCAGT ACTTCGGACT GAAGCCGGAA CAGGCACCTG TGATCATCAT 4400 | |||||||||| |||||||||| |||||||||| |||||||||| .......... .........T ACTTCGGACT GAAGCCGGAA CAGGCACCTG TGATCATCAT 436 AATGGACGCT GATGAACAAA AGTATATTAA GGACCATGTG GAACCTGATG CCATTGCTGC 4460 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATGGACGCT GATGAACAAA AGTATATTAA GGACCATGTG GAACCTGATG CCATTGCTGC 496 TTACTTGAAG GATTACAAGG TGATGCATCC TCTTCTTTTT CTTGGATATA TTTTGGAATG 4520 ||||||||| ||||||||| TTACTTGAAA GATTACAAG. .......... .......... .......... .......... 515 AAAGCGTTGT TAATTGTGAA CAATATTCTG CACGGAAGGA AAGGCTTACT AACCTTTTTC 4580 .......... .......... .......... .......... .......... .......... 515 CTCTAATTTT CCACATTGTT ACAGGAAGGA AAACTG 4616 |||||| |||||| .......... .......... ....GAAGGA AAACTG 527 hqPGS_C06HBa0054K13.1-11+_SGN-E206447+ (3561 3694,3810 3935,4130 4264,4360 4479,4605 4616) ******************************************************************************** EST sequence 43 +strand 226 n (File: SGN-E263442+) 1 ATGTTAAATT ATGTTTCTTT CCAGTATGAA AAAGCTGCCT CAGAGCTGAG TAGTCATGAC 61 CCTCCAATTG TTCTAGCTAA GTATGATGCA AATGATGAAG CCAATAGAGA ACTTTCAAAA 121 CAGTACGAGA TCCAGGGTTT CCCAACTATT AAGATATTGA GAGATGGAGG AAAGAAAGTT 181 CAAGACTATA ACGGTCCTCN TGAAGCANCT GGTATTGTAT CCTACT Predicted gene structure (within gDNA segment 2499 to 3934): Exon 1 3099 3324 ( 226 n); cDNA 1 226 ( 226 n); score: 0.991 MATCH C06HBa0054K13.1-11+ SGN-E263442+ 0.991 226 1.000 C PGS_C06HBa0054K13.1-11+_SGN-E263442+ (3099 3324) Alignment (genomic DNA sequence = upper lines): ATGTTAAATT ATGTTTCTTT CCAGTATGAA AAAGCTGCCT CAGAGCTGAG TAGTCATGAC 3158 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGTTAAATT ATGTTTCTTT CCAGTATGAA AAAGCTGCCT CAGAGCTGAG TAGTCATGAC 60 CCTCCAATTG TTCTAGCTAA GTATGATGCA AATGATGAAG CCAATAGAGA ACTTTCAAAA 3218 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCTCCAATTG TTCTAGCTAA GTATGATGCA AATGATGAAG CCAATAGAGA ACTTTCAAAA 120 CAGTACGAGA TCCAGGGTTT CCCAACTATT AAGATATTGA GAGATGGAGG AAAGAAAGTT 3278 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAGTACGAGA TCCAGGGTTT CCCAACTATT AAGATATTGA GAGATGGAGG AAAGAAAGTT 180 CAAGACTATA ACGGTCCTCG TGAAGCAGCT GGTATTGTAT CCTACT 3324 |||||||||| ||||||||| ||||||| || |||||||||| |||||| CAAGACTATA ACGGTCCTCN TGAAGCANCT GGTATTGTAT CCTACT 226 hqPGS_C06HBa0054K13.1-11+_SGN-E263442+ (3099 3324) ******************************************************************************** EST sequence 75 +strand 555 n (File: SGN-E256293+) 1 CGTCTTCTAA AGCCATTTGA TGAACTCTTT GTTGATTTTG AGGACTTTGA TGTCGATGCA 61 ATGGAGAAGT TCATCTCAGA ATCTAGTATT CCTGTTGTTA CTATTTTTGA CAATGACCCA 121 AACAACCATC CTTATGTTAA CAAGTTCTTC GAAGGCACCA ACGCCAAGGC ATTGCTATTT 181 GTGAACTTTA GCTCTGAATT TGATGCTTTT AAGTCCAAGT ACAACGATGT TGCTGTGATT 241 TACAAAGGGG ATGGGGTGAG CTTTCTCTTG GGTGATGTTG AGGCTGGTCA AGGTGCTTTT 301 GAGTACTTCG GACTGAAGCC GGAACAGGCA CCTGTGATCA TCATAATGGA CGCTGATGAA 361 CAAAAGTATA TTAAGGACCA TGTGGAACCT GATGCCATTG CTGCTTACTT GAAGGATTAC 421 AAGGAAGGAA AACTGAAGCC ACATGTGAAG TCAGAGCCCA TCCCTGAAGT CAATGACGAA 481 CCTGTTAAGG TGGTTGTTAG GGATACCCTC CAGGATATGG TTTACAAATC GGGAAAAAAT 541 GTGCTGTTAG AGTTC Predicted gene structure (within gDNA segment 3053 to 4982): Exon 1 3653 3694 ( 42 n); cDNA 1 42 ( 42 n); score: 1.000 Intron 1 3695 3809 ( 115 n); Pd: 0.988 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 2 3810 3935 ( 126 n); cDNA 43 168 ( 126 n); score: 1.000 Intron 2 3936 4129 ( 194 n); Pd: 0.981 (s: 1.00), Pa: 0.965 (s: 1.00) Exon 3 4130 4264 ( 135 n); cDNA 169 303 ( 135 n); score: 1.000 Intron 3 4265 4359 ( 95 n); Pd: 0.997 (s: 1.00), Pa: 0.858 (s: 1.00) Exon 4 4360 4479 ( 120 n); cDNA 304 423 ( 120 n); score: 1.000 Intron 4 4480 4604 ( 125 n); Pd: 1.000 (s: 1.00), Pa: 0.984 (s: 1.00) Exon 5 4605 4722 ( 118 n); cDNA 424 541 ( 118 n); score: 1.000 MATCH C06HBa0054K13.1-11+ SGN-E256293+ 1.000 541 0.975 C PGS_C06HBa0054K13.1-11+_SGN-E256293+ (3653 3694,3810 3935,4130 4264,4360 4479,4605 4722) Alignment (genomic DNA sequence = upper lines): CGTCTTCTAA AGCCATTTGA TGAACTCTTT GTTGATTTTG AGGTATTACA GTTATCTGTG 3712 |||||||||| |||||||||| |||||||||| |||||||||| || CGTCTTCTAA AGCCATTTGA TGAACTCTTT GTTGATTTTG AG........ .......... 42 TATATTTTTA TCTTTGATAC TCATTGTATT ATGGTTATGA GGCTCAACTC TGTCCTATGT 3772 .......... .......... .......... .......... .......... .......... 42 TATCTTTTAA TTGGCCATTG ATTGTACATA CTTGCAGGAC TTTGATGTCG ATGCAATGGA 3832 ||| |||||||||| |||||||||| .......... .......... .......... .......GAC TTTGATGTCG ATGCAATGGA 65 GAAGTTCATC TCAGAATCTA GTATTCCTGT TGTTACTATT TTTGACAATG ACCCAAACAA 3892 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAGTTCATC TCAGAATCTA GTATTCCTGT TGTTACTATT TTTGACAATG ACCCAAACAA 125 CCATCCTTAT GTTAACAAGT TCTTCGAAGG CACCAACGCC AAGGTACTTG ATTCTGCGAG 3952 |||||||||| |||||||||| |||||||||| |||||||||| ||| CCATCCTTAT GTTAACAAGT TCTTCGAAGG CACCAACGCC AAG....... .......... 168 CTGTAATGCT TCAATTTGAC CTTATATTTC AACGTCAAGC AATTCTAGGA TCTTCTCATG 4012 .......... .......... .......... .......... .......... .......... 168 AATTTTACAG TTATATGCTT GTACTTGTAT TATTTTCTTT TCATTCACTA ATATTTGACA 4072 .......... .......... .......... .......... .......... .......... 168 ATTAACTTCA AAGTTCTAAG AGATTGATTT GTTTTTTTGA CATTTGCAAA TCTACAGGCA 4132 ||| .......... .......... .......... .......... .......... .......GCA 171 TTGCTATTTG TGAACTTTAG CTCTGAATTT GATGCTTTTA AGTCCAAGTA CAACGATGTT 4192 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGCTATTTG TGAACTTTAG CTCTGAATTT GATGCTTTTA AGTCCAAGTA CAACGATGTT 231 GCTGTGATTT ACAAAGGGGA TGGGGTGAGC TTTCTCTTGG GTGATGTTGA GGCTGGTCAA 4252 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTGTGATTT ACAAAGGGGA TGGGGTGAGC TTTCTCTTGG GTGATGTTGA GGCTGGTCAA 291 GGTGCTTTTG AGGTTGGTTA AAATTTTCAA CTATCTGATT ACAGTGTCAT TGTATCCATG 4312 |||||||||| || GGTGCTTTTG AG........ .......... .......... .......... .......... 303 ATCACGTAAA AAGGCGCGTT GAACATTCGT TTTATTTGGA ATTGCAGTAC TTCGGACTGA 4372 ||| |||||||||| .......... .......... .......... .......... .......TAC TTCGGACTGA 316 AGCCGGAACA GGCACCTGTG ATCATCATAA TGGACGCTGA TGAACAAAAG TATATTAAGG 4432 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCCGGAACA GGCACCTGTG ATCATCATAA TGGACGCTGA TGAACAAAAG TATATTAAGG 376 ACCATGTGGA ACCTGATGCC ATTGCTGCTT ACTTGAAGGA TTACAAGGTG ATGCATCCTC 4492 |||||||||| |||||||||| |||||||||| |||||||||| ||||||| ACCATGTGGA ACCTGATGCC ATTGCTGCTT ACTTGAAGGA TTACAAG... .......... 423 TTCTTTTTCT TGGATATATT TTGGAATGAA AGCGTTGTTA ATTGTGAACA ATATTCTGCA 4552 .......... .......... .......... .......... .......... .......... 423 CGGAAGGAAA GGCTTACTAA CCTTTTTCCT CTAATTTTCC ACATTGTTAC AGGAAGGAAA 4612 |||||||| .......... .......... .......... .......... .......... ..GAAGGAAA 431 ACTGAAGCCA CATGTGAAGT CAGAGCCCAT CCCTGAAGTC AATGACGAAC CTGTTAAGGT 4672 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACTGAAGCCA CATGTGAAGT CAGAGCCCAT CCCTGAAGTC AATGACGAAC CTGTTAAGGT 491 GGTTGTTAGG GATACCCTCC AGGATATGGT TTACAAATCG GGAAAAAATG 4722 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGTTGTTAGG GATACCCTCC AGGATATGGT TTACAAATCG GGAAAAAATG 541 hqPGS_C06HBa0054K13.1-11+_SGN-E256293+ (3653 3694,3810 3935,4130 4264,4360 4479,4605 4722) ******************************************************************************** EST sequence 80 +strand 522 n (File: SGN-E319042+) 1 TGATGTCGAT GCAATGGAGA AGTTCATCTC AGAATCTAGT ATTCCTGTTG TTACTATTTT 61 TGACAATGAC CCAAACAACC ATCCTTATGT TAACAAGTTC TTCGAAGGCA CCAACGCCAA 121 GGCATTGCTA TTTGTGAACT TTAGCTCTGA ATTTGATGCT TTTAAGTCCA AGTACAACGA 181 TGTTGCTGTG ATTTACAAAG GGGATGGGGT GAGCTTTCTC TTGGGTGATG TTGAGGCTGG 241 TCAAGGTGCT TTTGAGTACT TCGGACTGAA GCCGGAACAG GCACCTGTGA TCATCATAAT 301 GGACGCTGAT GAACAAAAGT ATATTAAGGA CCATGTGGAA CCTGATGCCA TTGCTGCTTA 361 CTTGAAGGAT TACAAGGAAG GAAAACTGAA GCCACATGTG AAGTCAGAGC CCATCCCTGA 421 AGTCAATGAC GAACCTGTTA AGGTGGTTGT TAGGGATACC CTCCAGGATA TGGTTTACAA 481 ATCGGGAAAA AATGTGCTGT TAGAGTTCTA TGCACCTTGG TG Predicted gene structure (within gDNA segment 3215 to 4982): Exon 1 3815 3935 ( 121 n); cDNA 1 121 ( 121 n); score: 1.000 Intron 1 3936 4129 ( 194 n); Pd: 0.981 (s: 1.00), Pa: 0.965 (s: 1.00) Exon 2 4130 4264 ( 135 n); cDNA 122 256 ( 135 n); score: 1.000 Intron 2 4265 4359 ( 95 n); Pd: 0.997 (s: 1.00), Pa: 0.858 (s: 1.00) Exon 3 4360 4479 ( 120 n); cDNA 257 376 ( 120 n); score: 1.000 Intron 3 4480 4604 ( 125 n); Pd: 1.000 (s: 1.00), Pa: 0.984 (s: 1.00) Exon 4 4605 4722 ( 118 n); cDNA 377 494 ( 118 n); score: 1.000 MATCH C06HBa0054K13.1-11+ SGN-E319042+ 1.000 494 0.946 C PGS_C06HBa0054K13.1-11+_SGN-E319042+ (3815 3935,4130 4264,4360 4479,4605 4722) Alignment (genomic DNA sequence = upper lines): TGATGTCGAT GCAATGGAGA AGTTCATCTC AGAATCTAGT ATTCCTGTTG TTACTATTTT 3874 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGATGTCGAT GCAATGGAGA AGTTCATCTC AGAATCTAGT ATTCCTGTTG TTACTATTTT 60 TGACAATGAC CCAAACAACC ATCCTTATGT TAACAAGTTC TTCGAAGGCA CCAACGCCAA 3934 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGACAATGAC CCAAACAACC ATCCTTATGT TAACAAGTTC TTCGAAGGCA CCAACGCCAA 120 GGTACTTGAT TCTGCGAGCT GTAATGCTTC AATTTGACCT TATATTTCAA CGTCAAGCAA 3994 | G......... .......... .......... .......... .......... .......... 121 TTCTAGGATC TTCTCATGAA TTTTACAGTT ATATGCTTGT ACTTGTATTA TTTTCTTTTC 4054 .......... .......... .......... .......... .......... .......... 121 ATTCACTAAT ATTTGACAAT TAACTTCAAA GTTCTAAGAG ATTGATTTGT TTTTTTGACA 4114 .......... .......... .......... .......... .......... .......... 121 TTTGCAAATC TACAGGCATT GCTATTTGTG AACTTTAGCT CTGAATTTGA TGCTTTTAAG 4174 ||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... .....GCATT GCTATTTGTG AACTTTAGCT CTGAATTTGA TGCTTTTAAG 166 TCCAAGTACA ACGATGTTGC TGTGATTTAC AAAGGGGATG GGGTGAGCTT TCTCTTGGGT 4234 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCCAAGTACA ACGATGTTGC TGTGATTTAC AAAGGGGATG GGGTGAGCTT TCTCTTGGGT 226 GATGTTGAGG CTGGTCAAGG TGCTTTTGAG GTTGGTTAAA ATTTTCAACT ATCTGATTAC 4294 |||||||||| |||||||||| |||||||||| GATGTTGAGG CTGGTCAAGG TGCTTTTGAG .......... .......... .......... 256 AGTGTCATTG TATCCATGAT CACGTAAAAA GGCGCGTTGA ACATTCGTTT TATTTGGAAT 4354 .......... .......... .......... .......... .......... .......... 256 TGCAGTACTT CGGACTGAAG CCGGAACAGG CACCTGTGAT CATCATAATG GACGCTGATG 4414 ||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .....TACTT CGGACTGAAG CCGGAACAGG CACCTGTGAT CATCATAATG GACGCTGATG 311 AACAAAAGTA TATTAAGGAC CATGTGGAAC CTGATGCCAT TGCTGCTTAC TTGAAGGATT 4474 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACAAAAGTA TATTAAGGAC CATGTGGAAC CTGATGCCAT TGCTGCTTAC TTGAAGGATT 371 ACAAGGTGAT GCATCCTCTT CTTTTTCTTG GATATATTTT GGAATGAAAG CGTTGTTAAT 4534 ||||| ACAAG..... .......... .......... .......... .......... .......... 376 TGTGAACAAT ATTCTGCACG GAAGGAAAGG CTTACTAACC TTTTTCCTCT AATTTTCCAC 4594 .......... .......... .......... .......... .......... .......... 376 ATTGTTACAG GAAGGAAAAC TGAAGCCACA TGTGAAGTCA GAGCCCATCC CTGAAGTCAA 4654 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... GAAGGAAAAC TGAAGCCACA TGTGAAGTCA GAGCCCATCC CTGAAGTCAA 426 TGACGAACCT GTTAAGGTGG TTGTTAGGGA TACCCTCCAG GATATGGTTT ACAAATCGGG 4714 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGACGAACCT GTTAAGGTGG TTGTTAGGGA TACCCTCCAG GATATGGTTT ACAAATCGGG 486 AAAAAATG 4722 |||||||| AAAAAATG 494 hqPGS_C06HBa0054K13.1-11+_SGN-E319042+ (3815 3935,4130 4264,4360 4479,4605 4722) ******************************************************************************** EST sequence 46 +strand 509 n (File: SGN-E269568+) 1 TCGATGCTAT GGAGAAGTTC ATCTCAGAAT CTAGTATTGC TGTTGTTACT ATTTTTGACA 61 ATGACCCAAA CAACCATCCT TATGTTAACA AGTTCTTCGA AGGCACCAAC GCCAAGGCAT 121 TGCTATTTGT GAACTTTAGC TCTGAATTTG ATGCTTTTAA GTCCAAGTAC AACGATGTTG 181 CTGTGATTTA CAAAGGGGAT GGGGTGAGCT TTCTCTTGGG TGATGTTGAG GCTGGTCAAG 241 GTGCTTTTGA GTACTTCGGA CTGAAGCCGG AACAGGCACC TGTGATCATC ATAATGGACG 301 CTGATGAACA AAAGTATATT AAGGACCATG TGGAACCTGA TGCCATTGCT GCTTACTTGA 361 AGGATTACAA GGAAGGAAAA CTGAAGCCAC ATGTGAAGTC AGAGCCCATC CCTGAAGTCA 421 ATGACGAACC TGTTAAGGTG GTTGTTAGGG ATACCCTCCA GGATATGGTT TACAAATCGG 481 GAAAAAATGT GCTGTTAGAG TTCTATGCA Predicted gene structure (within gDNA segment 3148 to 4982): Exon 1 3820 3935 ( 116 n); cDNA 1 116 ( 116 n); score: 0.983 Intron 1 3936 4129 ( 194 n); Pd: 0.981 (s: 1.00), Pa: 0.965 (s: 1.00) Exon 2 4130 4264 ( 135 n); cDNA 117 251 ( 135 n); score: 1.000 Intron 2 4265 4359 ( 95 n); Pd: 0.997 (s: 1.00), Pa: 0.858 (s: 1.00) Exon 3 4360 4479 ( 120 n); cDNA 252 371 ( 120 n); score: 1.000 Intron 3 4480 4604 ( 125 n); Pd: 1.000 (s: 1.00), Pa: 0.984 (s: 1.00) Exon 4 4605 4722 ( 118 n); cDNA 372 489 ( 118 n); score: 1.000 MATCH C06HBa0054K13.1-11+ SGN-E269568+ 0.996 489 0.961 C PGS_C06HBa0054K13.1-11+_SGN-E269568+ (3820 3935,4130 4264,4360 4479,4605 4722) Alignment (genomic DNA sequence = upper lines): TCGATGCAAT GGAGAAGTTC ATCTCAGAAT CTAGTATTCC TGTTGTTACT ATTTTTGACA 3879 ||||||| || |||||||||| |||||||||| |||||||| | |||||||||| |||||||||| TCGATGCTAT GGAGAAGTTC ATCTCAGAAT CTAGTATTGC TGTTGTTACT ATTTTTGACA 60 ATGACCCAAA CAACCATCCT TATGTTAACA AGTTCTTCGA AGGCACCAAC GCCAAGGTAC 3939 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||| ATGACCCAAA CAACCATCCT TATGTTAACA AGTTCTTCGA AGGCACCAAC GCCAAG.... 116 TTGATTCTGC GAGCTGTAAT GCTTCAATTT GACCTTATAT TTCAACGTCA AGCAATTCTA 3999 .......... .......... .......... .......... .......... .......... 116 GGATCTTCTC ATGAATTTTA CAGTTATATG CTTGTACTTG TATTATTTTC TTTTCATTCA 4059 .......... .......... .......... .......... .......... .......... 116 CTAATATTTG ACAATTAACT TCAAAGTTCT AAGAGATTGA TTTGTTTTTT TGACATTTGC 4119 .......... .......... .......... .......... .......... .......... 116 AAATCTACAG GCATTGCTAT TTGTGAACTT TAGCTCTGAA TTTGATGCTT TTAAGTCCAA 4179 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... GCATTGCTAT TTGTGAACTT TAGCTCTGAA TTTGATGCTT TTAAGTCCAA 166 GTACAACGAT GTTGCTGTGA TTTACAAAGG GGATGGGGTG AGCTTTCTCT TGGGTGATGT 4239 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTACAACGAT GTTGCTGTGA TTTACAAAGG GGATGGGGTG AGCTTTCTCT TGGGTGATGT 226 TGAGGCTGGT CAAGGTGCTT TTGAGGTTGG TTAAAATTTT CAACTATCTG ATTACAGTGT 4299 |||||||||| |||||||||| ||||| TGAGGCTGGT CAAGGTGCTT TTGAG..... .......... .......... .......... 251 CATTGTATCC ATGATCACGT AAAAAGGCGC GTTGAACATT CGTTTTATTT GGAATTGCAG 4359 .......... .......... .......... .......... .......... .......... 251 TACTTCGGAC TGAAGCCGGA ACAGGCACCT GTGATCATCA TAATGGACGC TGATGAACAA 4419 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TACTTCGGAC TGAAGCCGGA ACAGGCACCT GTGATCATCA TAATGGACGC TGATGAACAA 311 AAGTATATTA AGGACCATGT GGAACCTGAT GCCATTGCTG CTTACTTGAA GGATTACAAG 4479 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGTATATTA AGGACCATGT GGAACCTGAT GCCATTGCTG CTTACTTGAA GGATTACAAG 371 GTGATGCATC CTCTTCTTTT TCTTGGATAT ATTTTGGAAT GAAAGCGTTG TTAATTGTGA 4539 .......... .......... .......... .......... .......... .......... 371 ACAATATTCT GCACGGAAGG AAAGGCTTAC TAACCTTTTT CCTCTAATTT TCCACATTGT 4599 .......... .......... .......... .......... .......... .......... 371 TACAGGAAGG AAAACTGAAG CCACATGTGA AGTCAGAGCC CATCCCTGAA GTCAATGACG 4659 ||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .....GAAGG AAAACTGAAG CCACATGTGA AGTCAGAGCC CATCCCTGAA GTCAATGACG 426 AACCTGTTAA GGTGGTTGTT AGGGATACCC TCCAGGATAT GGTTTACAAA TCGGGAAAAA 4719 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACCTGTTAA GGTGGTTGTT AGGGATACCC TCCAGGATAT GGTTTACAAA TCGGGAAAAA 486 ATG 4722 ||| ATG 489 hqPGS_C06HBa0054K13.1-11+_SGN-E269568+ (3820 3935,4130 4264,4360 4479,4605 4722) ******************************************************************************** EST sequence 8 +strand 417 n (File: SGN-E310371+) 1 AATGGAGAAG TTCATCTCAC AATCTAGTAT TCCTGTTGTT ACTATTTTTG ACAATGACCC 61 AAACAACCAT CCTTATGTTA ACAAGTTCTT CGAAGGCACC AACGCCAAGG CATTGCTATT 121 TGTGAACTTT AGCTCTGAAT TTGATGCTTT TAAGTCCAAG TACAACGATG TTGCTGTGAT 181 TTACAAAGGG GATGGGGTGA GCTTTCTCTT GGGTGATGTT GAGGCTGGTC AAGGTGCTTT 241 TGAGTACTTC GGACTGAAGC CGGAACAGGC ACCTGTGATC ATCATAATGG ACGCTGATGA 301 ACAAAAGTAT ATTAAGGACC ATGTGGAACC TGATGCCATT GCTGCTTACT TGAAGGATTA 361 CAAGGAAGGA AAACTGAAGC CACATGTGAA GTCAGAGCCC ATCCCTGAAG TCAATGA Predicted gene structure (within gDNA segment 3227 to 4982): Exon 1 3827 3935 ( 109 n); cDNA 1 109 ( 109 n); score: 0.991 Intron 1 3936 4129 ( 194 n); Pd: 0.981 (s: 1.00), Pa: 0.965 (s: 1.00) Exon 2 4130 4264 ( 135 n); cDNA 110 244 ( 135 n); score: 1.000 Intron 2 4265 4359 ( 95 n); Pd: 0.997 (s: 1.00), Pa: 0.858 (s: 1.00) Exon 3 4360 4479 ( 120 n); cDNA 245 364 ( 120 n); score: 1.000 Intron 3 4480 4604 ( 125 n); Pd: 1.000 (s: 1.00), Pa: 0.984 (s: 1.00) Exon 4 4605 4657 ( 53 n); cDNA 365 417 ( 53 n); score: 1.000 MATCH C06HBa0054K13.1-11+ SGN-E310371+ 0.998 417 1.000 C PGS_C06HBa0054K13.1-11+_SGN-E310371+ (3827 3935,4130 4264,4360 4479,4605 4657) Alignment (genomic DNA sequence = upper lines): AATGGAGAAG TTCATCTCAG AATCTAGTAT TCCTGTTGTT ACTATTTTTG ACAATGACCC 3886 |||||||||| ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATGGAGAAG TTCATCTCAC AATCTAGTAT TCCTGTTGTT ACTATTTTTG ACAATGACCC 60 AAACAACCAT CCTTATGTTA ACAAGTTCTT CGAAGGCACC AACGCCAAGG TACTTGATTC 3946 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| AAACAACCAT CCTTATGTTA ACAAGTTCTT CGAAGGCACC AACGCCAAG. .......... 109 TGCGAGCTGT AATGCTTCAA TTTGACCTTA TATTTCAACG TCAAGCAATT CTAGGATCTT 4006 .......... .......... .......... .......... .......... .......... 109 CTCATGAATT TTACAGTTAT ATGCTTGTAC TTGTATTATT TTCTTTTCAT TCACTAATAT 4066 .......... .......... .......... .......... .......... .......... 109 TTGACAATTA ACTTCAAAGT TCTAAGAGAT TGATTTGTTT TTTTGACATT TGCAAATCTA 4126 .......... .......... .......... .......... .......... .......... 109 CAGGCATTGC TATTTGTGAA CTTTAGCTCT GAATTTGATG CTTTTAAGTC CAAGTACAAC 4186 ||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ...GCATTGC TATTTGTGAA CTTTAGCTCT GAATTTGATG CTTTTAAGTC CAAGTACAAC 166 GATGTTGCTG TGATTTACAA AGGGGATGGG GTGAGCTTTC TCTTGGGTGA TGTTGAGGCT 4246 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATGTTGCTG TGATTTACAA AGGGGATGGG GTGAGCTTTC TCTTGGGTGA TGTTGAGGCT 226 GGTCAAGGTG CTTTTGAGGT TGGTTAAAAT TTTCAACTAT CTGATTACAG TGTCATTGTA 4306 |||||||||| |||||||| GGTCAAGGTG CTTTTGAG.. .......... .......... .......... .......... 244 TCCATGATCA CGTAAAAAGG CGCGTTGAAC ATTCGTTTTA TTTGGAATTG CAGTACTTCG 4366 ||||||| .......... .......... .......... .......... .......... ...TACTTCG 251 GACTGAAGCC GGAACAGGCA CCTGTGATCA TCATAATGGA CGCTGATGAA CAAAAGTATA 4426 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GACTGAAGCC GGAACAGGCA CCTGTGATCA TCATAATGGA CGCTGATGAA CAAAAGTATA 311 TTAAGGACCA TGTGGAACCT GATGCCATTG CTGCTTACTT GAAGGATTAC AAGGTGATGC 4486 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||| TTAAGGACCA TGTGGAACCT GATGCCATTG CTGCTTACTT GAAGGATTAC AAG....... 364 ATCCTCTTCT TTTTCTTGGA TATATTTTGG AATGAAAGCG TTGTTAATTG TGAACAATAT 4546 .......... .......... .......... .......... .......... .......... 364 TCTGCACGGA AGGAAAGGCT TACTAACCTT TTTCCTCTAA TTTTCCACAT TGTTACAGGA 4606 || .......... .......... .......... .......... .......... ........GA 366 AGGAAAACTG AAGCCACATG TGAAGTCAGA GCCCATCCCT GAAGTCAATG A 4657 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| | AGGAAAACTG AAGCCACATG TGAAGTCAGA GCCCATCCCT GAAGTCAATG A 417 hqPGS_C06HBa0054K13.1-11+_SGN-E310371+ (3827 3935,4130 4264,4360 4479,4605 4657) ******************************************************************************** EST sequence 112 +strand 444 n (File: SGN-E287726+) 1 AAACAACCAT CCTTATGTTA ACAAGTTCTT CGAAGGCACC AACGCCAAGG CATTGCTATT 61 TGTGAACTTT AGCTCTGAAT TTGATGCTTT TAAGTCCAAG TACAACGATG TTGCTGTGAT 121 TTACAAAGGG GATGGGGTGA GCTTTCTCTT GGGTGATGTT GAGGCTGGTC AAGGTGCTTT 181 TGAGTACTTC GGACTGAAGC CGGAACAGGC ACCTGTGATC ATCATAATGG ACGCTGATGA 241 ACAAAAGTAT ATTAAGGACC ATGTGGAACC TGATGCCATT GCTGCTTACT TGAAGGATTA 301 CAAGGAAGGA AAACTGAAGC CACATGTGAA GTCAGAGCCC ATCCCTGAAG TCAATGACGA 361 ACCTGTTAAG GTGGTTGTTA GGGATACCCT CCAGGATATG GTTTACAAAT CGGGAAAAAA 421 TGTGCTGTTA GAGTTCTATG CACC Predicted gene structure (within gDNA segment 3287 to 4982): Exon 1 3887 3935 ( 49 n); cDNA 1 49 ( 49 n); score: 1.000 Intron 1 3936 4129 ( 194 n); Pd: 0.981 (s: 1.00), Pa: 0.965 (s: 1.00) Exon 2 4130 4264 ( 135 n); cDNA 50 184 ( 135 n); score: 1.000 Intron 2 4265 4359 ( 95 n); Pd: 0.997 (s: 1.00), Pa: 0.858 (s: 1.00) Exon 3 4360 4479 ( 120 n); cDNA 185 304 ( 120 n); score: 1.000 Intron 3 4480 4604 ( 125 n); Pd: 1.000 (s: 1.00), Pa: 0.984 (s: 1.00) Exon 4 4605 4722 ( 118 n); cDNA 305 422 ( 118 n); score: 1.000 MATCH C06HBa0054K13.1-11+ SGN-E287726+ 1.000 422 0.950 C PGS_C06HBa0054K13.1-11+_SGN-E287726+ (3887 3935,4130 4264,4360 4479,4605 4722) Alignment (genomic DNA sequence = upper lines): AAACAACCAT CCTTATGTTA ACAAGTTCTT CGAAGGCACC AACGCCAAGG TACTTGATTC 3946 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| AAACAACCAT CCTTATGTTA ACAAGTTCTT CGAAGGCACC AACGCCAAG. .......... 49 TGCGAGCTGT AATGCTTCAA TTTGACCTTA TATTTCAACG TCAAGCAATT CTAGGATCTT 4006 .......... .......... .......... .......... .......... .......... 49 CTCATGAATT TTACAGTTAT ATGCTTGTAC TTGTATTATT TTCTTTTCAT TCACTAATAT 4066 .......... .......... .......... .......... .......... .......... 49 TTGACAATTA ACTTCAAAGT TCTAAGAGAT TGATTTGTTT TTTTGACATT TGCAAATCTA 4126 .......... .......... .......... .......... .......... .......... 49 CAGGCATTGC TATTTGTGAA CTTTAGCTCT GAATTTGATG CTTTTAAGTC CAAGTACAAC 4186 ||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ...GCATTGC TATTTGTGAA CTTTAGCTCT GAATTTGATG CTTTTAAGTC CAAGTACAAC 106 GATGTTGCTG TGATTTACAA AGGGGATGGG GTGAGCTTTC TCTTGGGTGA TGTTGAGGCT 4246 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATGTTGCTG TGATTTACAA AGGGGATGGG GTGAGCTTTC TCTTGGGTGA TGTTGAGGCT 166 GGTCAAGGTG CTTTTGAGGT TGGTTAAAAT TTTCAACTAT CTGATTACAG TGTCATTGTA 4306 |||||||||| |||||||| GGTCAAGGTG CTTTTGAG.. .......... .......... .......... .......... 184 TCCATGATCA CGTAAAAAGG CGCGTTGAAC ATTCGTTTTA TTTGGAATTG CAGTACTTCG 4366 ||||||| .......... .......... .......... .......... .......... ...TACTTCG 191 GACTGAAGCC GGAACAGGCA CCTGTGATCA TCATAATGGA CGCTGATGAA CAAAAGTATA 4426 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GACTGAAGCC GGAACAGGCA CCTGTGATCA TCATAATGGA CGCTGATGAA CAAAAGTATA 251 TTAAGGACCA TGTGGAACCT GATGCCATTG CTGCTTACTT GAAGGATTAC AAGGTGATGC 4486 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||| TTAAGGACCA TGTGGAACCT GATGCCATTG CTGCTTACTT GAAGGATTAC AAG....... 304 ATCCTCTTCT TTTTCTTGGA TATATTTTGG AATGAAAGCG TTGTTAATTG TGAACAATAT 4546 .......... .......... .......... .......... .......... .......... 304 TCTGCACGGA AGGAAAGGCT TACTAACCTT TTTCCTCTAA TTTTCCACAT TGTTACAGGA 4606 || .......... .......... .......... .......... .......... ........GA 306 AGGAAAACTG AAGCCACATG TGAAGTCAGA GCCCATCCCT GAAGTCAATG ACGAACCTGT 4666 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGAAAACTG AAGCCACATG TGAAGTCAGA GCCCATCCCT GAAGTCAATG ACGAACCTGT 366 TAAGGTGGTT GTTAGGGATA CCCTCCAGGA TATGGTTTAC AAATCGGGAA AAAATG 4722 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||| TAAGGTGGTT GTTAGGGATA CCCTCCAGGA TATGGTTTAC AAATCGGGAA AAAATG 422 hqPGS_C06HBa0054K13.1-11+_SGN-E287726+ (3887 3935,4130 4264,4360 4479,4605 4722) ******************************************************************************** EST sequence 86 +strand 454 n (File: SGN-E267069+) 1 GCTTTTAAGT CCAAGTACAA CGATGTTGCT GTGATTTACA AAGGGGATGG GGTGAGCTTT 61 CTCTTGGGTG ATGTTGAGGC TGGTCAAGGT GCTTTTGAGT ACTTCGGACT GAAGCCGGAA 121 CAGGCACCTG TGATCATCAT AATGGACGCT GATGAACAAA AGTATATTAA GGACCATGTG 181 GAACCTGATG CCATTGCTGC TTACTTGAAG GATTACAAGG AAGGAAAACT GAAGCCACAT 241 GTGAAGTCAG AGCCCATCCC TGAAGTCAAT GACGAACCTG TTAAGGTGGT TGTTAGGGAT 301 ACCCTCCAGG ATATGGTTTA CAAATCGGGA AAAAATGTGC TGTTAGAGTT CTATGCACCT 361 TGGTGTGGCC ACTGCAAGAG TCTGGCTCCA ATTTTGGATG AAGTGGCTGT ATCATTTGAA 421 AGCGATCCTG ATGTTCTTAT TGCAAAACTG GACG Predicted gene structure (within gDNA segment 3566 to 4982): Exon 1 4166 4264 ( 99 n); cDNA 1 99 ( 99 n); score: 1.000 Intron 1 4265 4359 ( 95 n); Pd: 0.997 (s: 1.00), Pa: 0.858 (s: 1.00) Exon 2 4360 4479 ( 120 n); cDNA 100 219 ( 120 n); score: 1.000 Intron 2 4480 4604 ( 125 n); Pd: 1.000 (s: 1.00), Pa: 0.984 (s: 1.00) Exon 3 4605 4722 ( 118 n); cDNA 220 337 ( 118 n); score: 1.000 MATCH C06HBa0054K13.1-11+ SGN-E267069+ 1.000 337 0.742 C PGS_C06HBa0054K13.1-11+_SGN-E267069+ (4166 4264,4360 4479,4605 4722) Alignment (genomic DNA sequence = upper lines): GCTTTTAAGT CCAAGTACAA CGATGTTGCT GTGATTTACA AAGGGGATGG GGTGAGCTTT 4225 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTTTTAAGT CCAAGTACAA CGATGTTGCT GTGATTTACA AAGGGGATGG GGTGAGCTTT 60 CTCTTGGGTG ATGTTGAGGC TGGTCAAGGT GCTTTTGAGG TTGGTTAAAA TTTTCAACTA 4285 |||||||||| |||||||||| |||||||||| ||||||||| CTCTTGGGTG ATGTTGAGGC TGGTCAAGGT GCTTTTGAG. .......... .......... 99 TCTGATTACA GTGTCATTGT ATCCATGATC ACGTAAAAAG GCGCGTTGAA CATTCGTTTT 4345 .......... .......... .......... .......... .......... .......... 99 ATTTGGAATT GCAGTACTTC GGACTGAAGC CGGAACAGGC ACCTGTGATC ATCATAATGG 4405 |||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ....TACTTC GGACTGAAGC CGGAACAGGC ACCTGTGATC ATCATAATGG 145 ACGCTGATGA ACAAAAGTAT ATTAAGGACC ATGTGGAACC TGATGCCATT GCTGCTTACT 4465 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACGCTGATGA ACAAAAGTAT ATTAAGGACC ATGTGGAACC TGATGCCATT GCTGCTTACT 205 TGAAGGATTA CAAGGTGATG CATCCTCTTC TTTTTCTTGG ATATATTTTG GAATGAAAGC 4525 |||||||||| |||| TGAAGGATTA CAAG...... .......... .......... .......... .......... 219 GTTGTTAATT GTGAACAATA TTCTGCACGG AAGGAAAGGC TTACTAACCT TTTTCCTCTA 4585 .......... .......... .......... .......... .......... .......... 219 ATTTTCCACA TTGTTACAGG AAGGAAAACT GAAGCCACAT GTGAAGTCAG AGCCCATCCC 4645 | |||||||||| |||||||||| |||||||||| |||||||||| .......... .........G AAGGAAAACT GAAGCCACAT GTGAAGTCAG AGCCCATCCC 260 TGAAGTCAAT GACGAACCTG TTAAGGTGGT TGTTAGGGAT ACCCTCCAGG ATATGGTTTA 4705 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAAGTCAAT GACGAACCTG TTAAGGTGGT TGTTAGGGAT ACCCTCCAGG ATATGGTTTA 320 CAAATCGGGA AAAAATG 4722 |||||||||| ||||||| CAAATCGGGA AAAAATG 337 hqPGS_C06HBa0054K13.1-11+_SGN-E267069+ (4166 4264,4360 4479,4605 4722) ******************************************************************************** EST sequence 91 +strand 541 n (File: SGN-E208077+) 1 ACAACGATGT TGCTGTGATT TACAAAGGGG ATGGGGTGAG CTTTCTCTTG GGTGATGTTG 61 AGGCTGGTCA AGGTGCTTTT GAGTACTTCG GACTGAAGCC GGAACAGGCA CCTGTGATCA 121 TCATAATGGA CGCTGATGAA CAAAAGTATA TTAAGGACCA TGTGGAACCT GATGCCATTG 181 CTGCTTACTT GAAGGATTAC AAGGAAGGAA AACTGAAGCC ACATGTGAAG TCAGAGCCCA 241 TCCCTGAAGT CAATGACGAA CCTGTTAAGG TGGTTGTTAG GGATACCCTC CAGGATATGG 301 TTTACAAATC GGGAAAAAAT GTGCTGTTAG AGTTCTATGC ACCTTGGTGT GGCCACTGCA 361 AGAGTCTGGC TCCAATTTTG GATGAAGTGG CTGTATCATT TGAAAGCGAT CCTGATGTTC 421 TCATTGCAAA ACTGGACGCA ACCGCAAATG ATCTCCCGAA AGGTGACTNT GATGTTCAGG 481 GATTCCCTAC TATGTACTTC AGATCCGCCT CTGGTAACTT GTCACAGTAC AATGGTGAGA 541 G Predicted gene structure (within gDNA segment 3582 to 4982): Exon 1 4182 4264 ( 83 n); cDNA 1 83 ( 83 n); score: 1.000 Intron 1 4265 4359 ( 95 n); Pd: 0.997 (s: 1.00), Pa: 0.858 (s: 1.00) Exon 2 4360 4479 ( 120 n); cDNA 84 203 ( 120 n); score: 1.000 Intron 2 4480 4604 ( 125 n); Pd: 1.000 (s: 1.00), Pa: 0.984 (s: 1.00) Exon 3 4605 4722 ( 118 n); cDNA 204 321 ( 118 n); score: 1.000 MATCH C06HBa0054K13.1-11+ SGN-E208077+ 1.000 321 0.593 C PGS_C06HBa0054K13.1-11+_SGN-E208077+ (4182 4264,4360 4479,4605 4722) Alignment (genomic DNA sequence = upper lines): ACAACGATGT TGCTGTGATT TACAAAGGGG ATGGGGTGAG CTTTCTCTTG GGTGATGTTG 4241 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACAACGATGT TGCTGTGATT TACAAAGGGG ATGGGGTGAG CTTTCTCTTG GGTGATGTTG 60 AGGCTGGTCA AGGTGCTTTT GAGGTTGGTT AAAATTTTCA ACTATCTGAT TACAGTGTCA 4301 |||||||||| |||||||||| ||| AGGCTGGTCA AGGTGCTTTT GAG....... .......... .......... .......... 83 TTGTATCCAT GATCACGTAA AAAGGCGCGT TGAACATTCG TTTTATTTGG AATTGCAGTA 4361 || .......... .......... .......... .......... .......... ........TA 85 CTTCGGACTG AAGCCGGAAC AGGCACCTGT GATCATCATA ATGGACGCTG ATGAACAAAA 4421 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTCGGACTG AAGCCGGAAC AGGCACCTGT GATCATCATA ATGGACGCTG ATGAACAAAA 145 GTATATTAAG GACCATGTGG AACCTGATGC CATTGCTGCT TACTTGAAGG ATTACAAGGT 4481 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||| GTATATTAAG GACCATGTGG AACCTGATGC CATTGCTGCT TACTTGAAGG ATTACAAG.. 203 GATGCATCCT CTTCTTTTTC TTGGATATAT TTTGGAATGA AAGCGTTGTT AATTGTGAAC 4541 .......... .......... .......... .......... .......... .......... 203 AATATTCTGC ACGGAAGGAA AGGCTTACTA ACCTTTTTCC TCTAATTTTC CACATTGTTA 4601 .......... .......... .......... .......... .......... .......... 203 CAGGAAGGAA AACTGAAGCC ACATGTGAAG TCAGAGCCCA TCCCTGAAGT CAATGACGAA 4661 ||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ...GAAGGAA AACTGAAGCC ACATGTGAAG TCAGAGCCCA TCCCTGAAGT CAATGACGAA 260 CCTGTTAAGG TGGTTGTTAG GGATACCCTC CAGGATATGG TTTACAAATC GGGAAAAAAT 4721 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCTGTTAAGG TGGTTGTTAG GGATACCCTC CAGGATATGG TTTACAAATC GGGAAAAAAT 320 G 4722 | G 321 hqPGS_C06HBa0054K13.1-11+_SGN-E208077+ (4182 4264,4360 4479,4605 4722) ******************************************************************************** EST sequence 22 +strand 495 n (File: SGN-E326919+) 1 CTTTCTCTTG GGTGATGTTG AGGCTGGTCA AGGTGCTTTT GAGTACTTCG GACTGAAGCC 61 GGAACAGGCA CCTGTGATCA TCATAATGGA CGCTGATGAA CAAAAGTATA TTAAGGACCA 121 TGTGGAACCT GATGCCATTG CTGCTTACTT GAAGGATTAC AAGGAAGGAA AACTGAAGCC 181 ACATGTGAAG TCAGAGCCCA TCCCTGAAGT CAATGACGAA CCTGTTAAGG TGGTTGTTAG 241 GGATACCCTC CAGGATATGG TTTACAAATC GGGAAAAAAT GTGCTGTTAG AGTTCTATGC 301 ACCTTGGTGT GGCCACTGCA AGAGTCTGGC TCCAATTTTG GATGAAGTGG CTGTATCATT 361 TGAAAGCGAT CCTGATGTTC TCATTGCNAA ACTGGACGCA ACCCGCAATG ATCTCCCGAA 421 AGGTGACTTT GATGTTCAGG NATTCCCTAC TATGTACTTC AGATCCGCCT CTGGTAACTT 481 GTCACAGTAC AATGG Predicted gene structure (within gDNA segment 3622 to 4982): Exon 1 4222 4264 ( 43 n); cDNA 1 43 ( 43 n); score: 1.000 Intron 1 4265 4359 ( 95 n); Pd: 0.997 (s: 1.00), Pa: 0.858 (s: 1.00) Exon 2 4360 4479 ( 120 n); cDNA 44 163 ( 120 n); score: 1.000 Intron 2 4480 4604 ( 125 n); Pd: 1.000 (s: 1.00), Pa: 0.984 (s: 1.00) Exon 3 4605 4722 ( 118 n); cDNA 164 281 ( 118 n); score: 1.000 MATCH C06HBa0054K13.1-11+ SGN-E326919+ 1.000 281 0.568 C PGS_C06HBa0054K13.1-11+_SGN-E326919+ (4222 4264,4360 4479,4605 4722) Alignment (genomic DNA sequence = upper lines): CTTTCTCTTG GGTGATGTTG AGGCTGGTCA AGGTGCTTTT GAGGTTGGTT AAAATTTTCA 4281 |||||||||| |||||||||| |||||||||| |||||||||| ||| CTTTCTCTTG GGTGATGTTG AGGCTGGTCA AGGTGCTTTT GAG....... .......... 43 ACTATCTGAT TACAGTGTCA TTGTATCCAT GATCACGTAA AAAGGCGCGT TGAACATTCG 4341 .......... .......... .......... .......... .......... .......... 43 TTTTATTTGG AATTGCAGTA CTTCGGACTG AAGCCGGAAC AGGCACCTGT GATCATCATA 4401 || |||||||||| |||||||||| |||||||||| |||||||||| .......... ........TA CTTCGGACTG AAGCCGGAAC AGGCACCTGT GATCATCATA 85 ATGGACGCTG ATGAACAAAA GTATATTAAG GACCATGTGG AACCTGATGC CATTGCTGCT 4461 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGGACGCTG ATGAACAAAA GTATATTAAG GACCATGTGG AACCTGATGC CATTGCTGCT 145 TACTTGAAGG ATTACAAGGT GATGCATCCT CTTCTTTTTC TTGGATATAT TTTGGAATGA 4521 |||||||||| |||||||| TACTTGAAGG ATTACAAG.. .......... .......... .......... .......... 163 AAGCGTTGTT AATTGTGAAC AATATTCTGC ACGGAAGGAA AGGCTTACTA ACCTTTTTCC 4581 .......... .......... .......... .......... .......... .......... 163 TCTAATTTTC CACATTGTTA CAGGAAGGAA AACTGAAGCC ACATGTGAAG TCAGAGCCCA 4641 ||||||| |||||||||| |||||||||| |||||||||| .......... .......... ...GAAGGAA AACTGAAGCC ACATGTGAAG TCAGAGCCCA 200 TCCCTGAAGT CAATGACGAA CCTGTTAAGG TGGTTGTTAG GGATACCCTC CAGGATATGG 4701 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCCCTGAAGT CAATGACGAA CCTGTTAAGG TGGTTGTTAG GGATACCCTC CAGGATATGG 260 TTTACAAATC GGGAAAAAAT G 4722 |||||||||| |||||||||| | TTTACAAATC GGGAAAAAAT G 281 hqPGS_C06HBa0054K13.1-11+_SGN-E326919+ (4222 4264,4360 4479,4605 4722) ******************************************************************************** EST sequence 13 +strand 468 n (File: SGN-E250966+) 1 TTGGGTGATG TTGAGGCTGG TCAAGGTGCT TTTGAGTACT TCGGACTGAA GCCGGAACAG 61 GCACCTGTGA TCATCATAAT GGACGCTGAT GAACAAAAGT ATATTAAGGA CCATGTGGAA 121 CCTGATGCCA TTGCTGCTTA CTTGAAGGAT TACAAGGAAG GAAAACTGAA GCCACATGTG 181 AAGTCAGAGC CCATCCCTGA AGTCAATGAC GAACCTGTTA AGGTGGTTGT TAGGGATACC 241 CTCCAGGATA TGGTTTACAA ATCGGGAAAA AATGTGCTGT TAGAGTTCTA TGCACCTTGG 301 TGTGGCCACT GCAAGAGTCT GGCTCCAATT TTGGATGAAG TGGCTGTATC ATTTGAAAGC 361 GATCCTGATG TTCTCATTGC AAAACTGGAC GCAACCGCAA ATGATCTCCC GAAAGGTGAC 421 TTTGATGTTC AGGGATTCCC TACTATGTAC TTCAGATCCG CCTCTGGT Predicted gene structure (within gDNA segment 3629 to 4982): Exon 1 4229 4264 ( 36 n); cDNA 1 36 ( 36 n); score: 1.000 Intron 1 4265 4359 ( 95 n); Pd: 0.997 (s: 0), Pa: 0.858 (s: 1.00) Exon 2 4360 4479 ( 120 n); cDNA 37 156 ( 120 n); score: 1.000 Intron 2 4480 4604 ( 125 n); Pd: 1.000 (s: 1.00), Pa: 0.984 (s: 1.00) Exon 3 4605 4722 ( 118 n); cDNA 157 274 ( 118 n); score: 1.000 MATCH C06HBa0054K13.1-11+ SGN-E250966+ 1.000 274 0.585 C PGS_C06HBa0054K13.1-11+_SGN-E250966+ (4229 4264,4360 4479,4605 4722) Alignment (genomic DNA sequence = upper lines): TTGGGTGATG TTGAGGCTGG TCAAGGTGCT TTTGAGGTTG GTTAAAATTT TCAACTATCT 4288 |||||||||| |||||||||| |||||||||| |||||| TTGGGTGATG TTGAGGCTGG TCAAGGTGCT TTTGAG.... .......... .......... 36 GATTACAGTG TCATTGTATC CATGATCACG TAAAAAGGCG CGTTGAACAT TCGTTTTATT 4348 .......... .......... .......... .......... .......... .......... 36 TGGAATTGCA GTACTTCGGA CTGAAGCCGG AACAGGCACC TGTGATCATC ATAATGGACG 4408 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... .TACTTCGGA CTGAAGCCGG AACAGGCACC TGTGATCATC ATAATGGACG 85 CTGATGAACA AAAGTATATT AAGGACCATG TGGAACCTGA TGCCATTGCT GCTTACTTGA 4468 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGATGAACA AAAGTATATT AAGGACCATG TGGAACCTGA TGCCATTGCT GCTTACTTGA 145 AGGATTACAA GGTGATGCAT CCTCTTCTTT TTCTTGGATA TATTTTGGAA TGAAAGCGTT 4528 |||||||||| | AGGATTACAA G......... .......... .......... .......... .......... 156 GTTAATTGTG AACAATATTC TGCACGGAAG GAAAGGCTTA CTAACCTTTT TCCTCTAATT 4588 .......... .......... .......... .......... .......... .......... 156 TTCCACATTG TTACAGGAAG GAAAACTGAA GCCACATGTG AAGTCAGAGC CCATCCCTGA 4648 |||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ......GAAG GAAAACTGAA GCCACATGTG AAGTCAGAGC CCATCCCTGA 200 AGTCAATGAC GAACCTGTTA AGGTGGTTGT TAGGGATACC CTCCAGGATA TGGTTTACAA 4708 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTCAATGAC GAACCTGTTA AGGTGGTTGT TAGGGATACC CTCCAGGATA TGGTTTACAA 260 ATCGGGAAAA AATG 4722 |||||||||| |||| ATCGGGAAAA AATG 274 hqPGS_C06HBa0054K13.1-11+_SGN-E250966+ (4229 4264,4360 4479,4605 4722) ******************************************************************************** EST sequence 47 +strand 354 n (File: SGN-E264284+) 1 GGGTGAGTTG AGGCTGGTCA AGGTGCTTTT GAGTACTTCG GACTGAAGCC GGAACAGGCA 61 CCTGTGATCA TCATAATGGA CGCTGATGAA CAAAAGTATA TTAAGGACCA TGTGGAACCT 121 GATGCCATTG CTGCTTACTT GAAGGATTAC AAGGAAGGAA AACTGAAGCC ACATGTGAAG 181 TCAGAGCCCA TCCCTGAAGT CAATGACGAA CCTGTTAAGG TGGTTGTTAG GGATACCCTC 241 CAGGATATGG TTTACAAATC GGGAAAAAAT GTGCTGTTAG AGTTCTATGC ACCTTGGTGT 301 GGCCACTGCA AGAGTCTGGC TCCAATTTTG GATGAAGTGG CTGTATCATT TGAA Predicted gene structure (within gDNA segment 3448 to 4982): Exon 1 4231 4264 ( 34 n); cDNA 1 33 ( 33 n); score: 0.971 Intron 1 4265 4359 ( 95 n); Pd: 0.997 (s: 0), Pa: 0.858 (s: 1.00) Exon 2 4360 4479 ( 120 n); cDNA 34 153 ( 120 n); score: 1.000 Intron 2 4480 4604 ( 125 n); Pd: 1.000 (s: 1.00), Pa: 0.984 (s: 1.00) Exon 3 4605 4722 ( 118 n); cDNA 154 271 ( 118 n); score: 1.000 MATCH C06HBa0054K13.1-11+ SGN-E264284+ 1.000 272 0.768 C PGS_C06HBa0054K13.1-11+_SGN-E264284+ (4231 4264,4360 4479,4605 4722) Alignment (genomic DNA sequence = upper lines): GGGTGATGTT GAGGCTGGTC AAGGTGCTTT TGAGGTTGGT TAAAATTTTC AACTATCTGA 4290 |||||| ||| |||||||||| |||||||||| |||| GGGTGA-GTT GAGGCTGGTC AAGGTGCTTT TGAG...... .......... .......... 33 TTACAGTGTC ATTGTATCCA TGATCACGTA AAAAGGCGCG TTGAACATTC GTTTTATTTG 4350 .......... .......... .......... .......... .......... .......... 33 GAATTGCAGT ACTTCGGACT GAAGCCGGAA CAGGCACCTG TGATCATCAT AATGGACGCT 4410 | |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .........T ACTTCGGACT GAAGCCGGAA CAGGCACCTG TGATCATCAT AATGGACGCT 84 GATGAACAAA AGTATATTAA GGACCATGTG GAACCTGATG CCATTGCTGC TTACTTGAAG 4470 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATGAACAAA AGTATATTAA GGACCATGTG GAACCTGATG CCATTGCTGC TTACTTGAAG 144 GATTACAAGG TGATGCATCC TCTTCTTTTT CTTGGATATA TTTTGGAATG AAAGCGTTGT 4530 ||||||||| GATTACAAG. .......... .......... .......... .......... .......... 153 TAATTGTGAA CAATATTCTG CACGGAAGGA AAGGCTTACT AACCTTTTTC CTCTAATTTT 4590 .......... .......... .......... .......... .......... .......... 153 CCACATTGTT ACAGGAAGGA AAACTGAAGC CACATGTGAA GTCAGAGCCC ATCCCTGAAG 4650 |||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ....GAAGGA AAACTGAAGC CACATGTGAA GTCAGAGCCC ATCCCTGAAG 199 TCAATGACGA ACCTGTTAAG GTGGTTGTTA GGGATACCCT CCAGGATATG GTTTACAAAT 4710 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCAATGACGA ACCTGTTAAG GTGGTTGTTA GGGATACCCT CCAGGATATG GTTTACAAAT 259 CGGGAAAAAA TG 4722 |||||||||| || CGGGAAAAAA TG 271 hqPGS_C06HBa0054K13.1-11+_SGN-E264284+ (4231 4264,4360 4479,4605 4722) ******************************************************************************** EST sequence 20 +strand 582 n (File: SGN-E211166+) 1 GATGTTGAGG CTGGTCAAGG TGCTTTTGAG TACTTCGGAC TGAAGCCGGA ACAGGCACCT 61 GTGATCATCA TAATGGACGC TGATGAACAA AAGTATATTA AGGACCATGT GGAACCTGAT 121 GCCATTGCTG CTTACTTGAA GGATTACAAG GAAGGAAAAC TGAAGCCACA TGTGAAGTCA 181 GAGCCCATCC CTGAAGTCAA TGACGAACCT GTTAAGGTGG TTGTTAGGGA TACCCTCCAG 241 GATATGGTTT ACAAATCGGG AAAAAATGTG CTGTTAGAGT TCTATGCACC TTGGTGTGGC 301 CACTGCAAGA GTCTGGCTCC AATTTTGGAT GAAGTGGCTG TATCATTTGA AAGCGATCCT 361 GATGTTCTCA TTGCAAAACT GGACGCAACC GCAAATGATC TCCCGAAAGG TGACTTTGAT 421 GTTCAGGGAT TCCCTACTAT GTACTTCAGA TCCGCCTCTG GTAACTTGTC ACAGTACAAT 481 GGTGAGAGAA ACAAAGAAGC TATCATCGAA TTCATCGAGA AGAATCGTGG CAAGCCTGCT 541 CAGTCAGACT CTGCCAAAGT CGATTCAGCA AAGGATGAAC TT Predicted gene structure (within gDNA segment 3635 to 4982): Exon 1 4235 4264 ( 30 n); cDNA 1 30 ( 30 n); score: 1.000 Intron 1 4265 4359 ( 95 n); Pd: 0.997 (s: 0), Pa: 0.858 (s: 1.00) Exon 2 4360 4479 ( 120 n); cDNA 31 150 ( 120 n); score: 1.000 Intron 2 4480 4604 ( 125 n); Pd: 1.000 (s: 1.00), Pa: 0.984 (s: 1.00) Exon 3 4605 4722 ( 118 n); cDNA 151 268 ( 118 n); score: 1.000 MATCH C06HBa0054K13.1-11+ SGN-E211166+ 1.000 268 0.460 C PGS_C06HBa0054K13.1-11+_SGN-E211166+ (4235 4264,4360 4479,4605 4722) Alignment (genomic DNA sequence = upper lines): GATGTTGAGG CTGGTCAAGG TGCTTTTGAG GTTGGTTAAA ATTTTCAACT ATCTGATTAC 4294 |||||||||| |||||||||| |||||||||| GATGTTGAGG CTGGTCAAGG TGCTTTTGAG .......... .......... .......... 30 AGTGTCATTG TATCCATGAT CACGTAAAAA GGCGCGTTGA ACATTCGTTT TATTTGGAAT 4354 .......... .......... .......... .......... .......... .......... 30 TGCAGTACTT CGGACTGAAG CCGGAACAGG CACCTGTGAT CATCATAATG GACGCTGATG 4414 ||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .....TACTT CGGACTGAAG CCGGAACAGG CACCTGTGAT CATCATAATG GACGCTGATG 85 AACAAAAGTA TATTAAGGAC CATGTGGAAC CTGATGCCAT TGCTGCTTAC TTGAAGGATT 4474 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACAAAAGTA TATTAAGGAC CATGTGGAAC CTGATGCCAT TGCTGCTTAC TTGAAGGATT 145 ACAAGGTGAT GCATCCTCTT CTTTTTCTTG GATATATTTT GGAATGAAAG CGTTGTTAAT 4534 ||||| ACAAG..... .......... .......... .......... .......... .......... 150 TGTGAACAAT ATTCTGCACG GAAGGAAAGG CTTACTAACC TTTTTCCTCT AATTTTCCAC 4594 .......... .......... .......... .......... .......... .......... 150 ATTGTTACAG GAAGGAAAAC TGAAGCCACA TGTGAAGTCA GAGCCCATCC CTGAAGTCAA 4654 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... GAAGGAAAAC TGAAGCCACA TGTGAAGTCA GAGCCCATCC CTGAAGTCAA 200 TGACGAACCT GTTAAGGTGG TTGTTAGGGA TACCCTCCAG GATATGGTTT ACAAATCGGG 4714 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGACGAACCT GTTAAGGTGG TTGTTAGGGA TACCCTCCAG GATATGGTTT ACAAATCGGG 260 AAAAAATG 4722 |||||||| AAAAAATG 268 hqPGS_C06HBa0054K13.1-11+_SGN-E211166+ (4235 4264,4360 4479,4605 4722) ******************************************************************************** EST sequence 126 -strand 804 n (File: SGN-E543832-) 1 GCTGGTCAAG GTGCTTTTGA GTACTTCGGA CTGAAGCCGG AACAGGCACC TGTGATCATC 61 ATAATGGACG CTGATGAACA AAAGTATATT AAGGACCATG TGGAACCTGA TGCCATTGCT 121 GCTTACTTGA AGGATTACAA GGAAGGAAAA CTGAAGCCAC ATGTGAAGTC AGAGCCCATC 181 CCTGAAGTCA ATGACGAACC TGTTAAGGTG GTTGTTAGGG ATACCCTCCA GGATATGGTT 241 TACAAATCGG GAAAAAATGT GCTGTTAGAG TTCTATGCAC CTTGGTGTGG CCACTGCAAG 301 AGTCTGGCTC CAATTTTGGA TGAAGTGGCT GTATCATTTG AAAGCGATCC TGATGTTCTC 361 ATTGCAAAAC TGGACGCAAC CGCAAATGAT CTCCCGAAAG GTGACTTTGA TGTTCAGGGA 421 TTCCCTACTA TGTACTTCAG ATCCGCCTCT GGTAACTTGT CACAGTACAA TGGTGAGAGA 481 ACAAAAGAGG CTATCATCGA ATTCATCGAG AAGAATCGTG GCAAGCCTGC TCAGTCAGAC 541 TCTGCCAAAG TCGATTCAGC AAAGGATGAA CTTTAGAGGA CTCTAGGAAC ATTGTGTACT 601 GGTGGATTCA AGTTTTGTTG GAAGCATTGT GTTTCTGGTG AATTCGACCT CCCACCGGAC 661 TACTGCTCTC TCCCAACGCT TCCGTTGTAG TTTTTGGAGC TTTTCAGCGC CAATAAAACG 721 GTTGTATGTA TCCATTTTGT GTATCGAATG TAGCTGGATT ATGAGTTTAT ATTATATCTA 781 TTGAGAAGTT CTCCAAAAAA AAAA Predicted gene structure (within gDNA segment 3558 to 4982): Exon 1 4244 4264 ( 21 n); cDNA 1 21 ( 21 n); score: 1.000 Intron 1 4265 4359 ( 95 n); Pd: 0.997 (s: 0), Pa: 0.858 (s: 1.00) Exon 2 4360 4479 ( 120 n); cDNA 22 141 ( 120 n); score: 1.000 Intron 2 4480 4604 ( 125 n); Pd: 1.000 (s: 1.00), Pa: 0.984 (s: 1.00) Exon 3 4605 4722 ( 118 n); cDNA 142 259 ( 118 n); score: 1.000 PPA cDNA 795 804 MATCH C06HBa0054K13.1-11+ SGN-E543832- 1.000 259 0.322 C PGS_C06HBa0054K13.1-11+_SGN-E543832- (4244 4264,4360 4479,4605 4722) Alignment (genomic DNA sequence = upper lines): GCTGGTCAAG GTGCTTTTGA GGTTGGTTAA AATTTTCAAC TATCTGATTA CAGTGTCATT 4303 |||||||||| |||||||||| | GCTGGTCAAG GTGCTTTTGA G......... .......... .......... .......... 21 GTATCCATGA TCACGTAAAA AGGCGCGTTG AACATTCGTT TTATTTGGAA TTGCAGTACT 4363 |||| .......... .......... .......... .......... .......... ......TACT 25 TCGGACTGAA GCCGGAACAG GCACCTGTGA TCATCATAAT GGACGCTGAT GAACAAAAGT 4423 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCGGACTGAA GCCGGAACAG GCACCTGTGA TCATCATAAT GGACGCTGAT GAACAAAAGT 85 ATATTAAGGA CCATGTGGAA CCTGATGCCA TTGCTGCTTA CTTGAAGGAT TACAAGGTGA 4483 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||| ATATTAAGGA CCATGTGGAA CCTGATGCCA TTGCTGCTTA CTTGAAGGAT TACAAG.... 141 TGCATCCTCT TCTTTTTCTT GGATATATTT TGGAATGAAA GCGTTGTTAA TTGTGAACAA 4543 .......... .......... .......... .......... .......... .......... 141 TATTCTGCAC GGAAGGAAAG GCTTACTAAC CTTTTTCCTC TAATTTTCCA CATTGTTACA 4603 .......... .......... .......... .......... .......... .......... 141 GGAAGGAAAA CTGAAGCCAC ATGTGAAGTC AGAGCCCATC CCTGAAGTCA ATGACGAACC 4663 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .GAAGGAAAA CTGAAGCCAC ATGTGAAGTC AGAGCCCATC CCTGAAGTCA ATGACGAACC 200 TGTTAAGGTG GTTGTTAGGG ATACCCTCCA GGATATGGTT TACAAATCGG GAAAAAATG 4722 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| TGTTAAGGTG GTTGTTAGGG ATACCCTCCA GGATATGGTT TACAAATCGG GAAAAAATG 259 hqPGS_C06HBa0054K13.1-11+_SGN-E543832- (4244 4264,4360 4479,4605 4722) ******************************************************************************** EST sequence 106 +strand 483 n (File: SGN-E273841+) 1 CTGGTCAAGG TGCTTTTGAG TACTTCGGAC TGAAGCCGGA ACAGGCACCT GTGATCATCA 61 TAATGGACGC TGATGAACAA AAGTATATTA AGGACCATGT GGAACCTGAT GCCATTGCTG 121 CTTACTTGAA GGATTACAAG GAAGGAAAAC TGAAGCCACA TGTGAAGTCA GAGCCCATCC 181 CTGAAGTCAA TGACGAACCT GTTAAGGTGG TTGTTAGGGA TACCCTCCAG GATATGGTTT 241 ACAAATCGGG AAAAAATGTG CTGTTAGAGT TCTATGCACC TTGGTGTGGC CACTGCAAGA 301 GTCTGGCTCC AATTTTGGAT GAAGTGGCTG TATCATTTGA AAGCGATCCT GATGTTCTCA 361 TTGCAAAACT GGACGCAACC GCAAATGATC TCCCGAAAGG TGACTTTGAT GTTCAGGGAT 421 TCCCTACTAT GTACTTCAGA TCCGCCTCTG GTAACTTGTC ACAGTACAAT GGTGAGAGAA 481 CAA Predicted gene structure (within gDNA segment 3578 to 4982): Exon 1 4245 4264 ( 20 n); cDNA 1 20 ( 20 n); score: 1.000 Intron 1 4265 4359 ( 95 n); Pd: 0.997 (s: 0), Pa: 0.858 (s: 1.00) Exon 2 4360 4479 ( 120 n); cDNA 21 140 ( 120 n); score: 1.000 Intron 2 4480 4604 ( 125 n); Pd: 1.000 (s: 1.00), Pa: 0.984 (s: 1.00) Exon 3 4605 4722 ( 118 n); cDNA 141 258 ( 118 n); score: 1.000 MATCH C06HBa0054K13.1-11+ SGN-E273841+ 1.000 258 0.534 C PGS_C06HBa0054K13.1-11+_SGN-E273841+ (4245 4264,4360 4479,4605 4722) Alignment (genomic DNA sequence = upper lines): CTGGTCAAGG TGCTTTTGAG GTTGGTTAAA ATTTTCAACT ATCTGATTAC AGTGTCATTG 4304 |||||||||| |||||||||| CTGGTCAAGG TGCTTTTGAG .......... .......... .......... .......... 20 TATCCATGAT CACGTAAAAA GGCGCGTTGA ACATTCGTTT TATTTGGAAT TGCAGTACTT 4364 ||||| .......... .......... .......... .......... .......... .....TACTT 25 CGGACTGAAG CCGGAACAGG CACCTGTGAT CATCATAATG GACGCTGATG AACAAAAGTA 4424 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGGACTGAAG CCGGAACAGG CACCTGTGAT CATCATAATG GACGCTGATG AACAAAAGTA 85 TATTAAGGAC CATGTGGAAC CTGATGCCAT TGCTGCTTAC TTGAAGGATT ACAAGGTGAT 4484 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||| TATTAAGGAC CATGTGGAAC CTGATGCCAT TGCTGCTTAC TTGAAGGATT ACAAG..... 140 GCATCCTCTT CTTTTTCTTG GATATATTTT GGAATGAAAG CGTTGTTAAT TGTGAACAAT 4544 .......... .......... .......... .......... .......... .......... 140 ATTCTGCACG GAAGGAAAGG CTTACTAACC TTTTTCCTCT AATTTTCCAC ATTGTTACAG 4604 .......... .......... .......... .......... .......... .......... 140 GAAGGAAAAC TGAAGCCACA TGTGAAGTCA GAGCCCATCC CTGAAGTCAA TGACGAACCT 4664 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAGGAAAAC TGAAGCCACA TGTGAAGTCA GAGCCCATCC CTGAAGTCAA TGACGAACCT 200 GTTAAGGTGG TTGTTAGGGA TACCCTCCAG GATATGGTTT ACAAATCGGG AAAAAATG 4722 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||| GTTAAGGTGG TTGTTAGGGA TACCCTCCAG GATATGGTTT ACAAATCGGG AAAAAATG 258 hqPGS_C06HBa0054K13.1-11+_SGN-E273841+ (4245 4264,4360 4479,4605 4722) ******************************************************************************** EST sequence 107 +strand 537 n (File: SGN-E273849+) 1 CTGGTCAAGG TGCTTTTGAG TACTTCGGAC TGAAGCCGGA ACAGGCACCT GTGATCATCA 61 TAATGGACGC TGATGAACAA AAGTATATTA AGGACCATGT GGAACCTGAT GCCATTGCTG 121 CTTACTTGAA GGATTACAAG GAAGGAAAAC TGAAGCCACA TGTGAAGTCA GAGCCCATCC 181 CTGAAGTCAA TGACGAACCT GTTAAGGTGG TTGTTAGGGA TACCCTCCAG GATATGGTTT 241 ACAAATCGGG AAAAAATGTG CTGTTAGAGT TCTATGCACC TTGGTGTGGC CACTGCAAGA 301 GTCTGGCTCC AATTTTGGAT GAAGTGGCTG TATCATTTGA AAGCGATCCT GATGTTCTCA 361 TTGCAAAACT GGACGCAACC GCAAATGATC TCCCGAAAGG TGACTTTGAT GTTCAGGGAT 421 TCCCTACTAT GTACTTCAGA TCCGCCTCTG GTAACTTGTC ACAGTACAAT GGTGAGAGAA 481 CAAAAGAGGC TATCATCGAA TTCATCGAGA AGAATCGTGG CAAGCCTGCT CAGTCAG Predicted gene structure (within gDNA segment 3578 to 4982): Exon 1 4245 4264 ( 20 n); cDNA 1 20 ( 20 n); score: 1.000 Intron 1 4265 4359 ( 95 n); Pd: 0.997 (s: 0), Pa: 0.858 (s: 1.00) Exon 2 4360 4479 ( 120 n); cDNA 21 140 ( 120 n); score: 1.000 Intron 2 4480 4604 ( 125 n); Pd: 1.000 (s: 1.00), Pa: 0.984 (s: 1.00) Exon 3 4605 4722 ( 118 n); cDNA 141 258 ( 118 n); score: 1.000 MATCH C06HBa0054K13.1-11+ SGN-E273849+ 1.000 258 0.480 C PGS_C06HBa0054K13.1-11+_SGN-E273849+ (4245 4264,4360 4479,4605 4722) Alignment (genomic DNA sequence = upper lines): CTGGTCAAGG TGCTTTTGAG GTTGGTTAAA ATTTTCAACT ATCTGATTAC AGTGTCATTG 4304 |||||||||| |||||||||| CTGGTCAAGG TGCTTTTGAG .......... .......... .......... .......... 20 TATCCATGAT CACGTAAAAA GGCGCGTTGA ACATTCGTTT TATTTGGAAT TGCAGTACTT 4364 ||||| .......... .......... .......... .......... .......... .....TACTT 25 CGGACTGAAG CCGGAACAGG CACCTGTGAT CATCATAATG GACGCTGATG AACAAAAGTA 4424 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGGACTGAAG CCGGAACAGG CACCTGTGAT CATCATAATG GACGCTGATG AACAAAAGTA 85 TATTAAGGAC CATGTGGAAC CTGATGCCAT TGCTGCTTAC TTGAAGGATT ACAAGGTGAT 4484 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||| TATTAAGGAC CATGTGGAAC CTGATGCCAT TGCTGCTTAC TTGAAGGATT ACAAG..... 140 GCATCCTCTT CTTTTTCTTG GATATATTTT GGAATGAAAG CGTTGTTAAT TGTGAACAAT 4544 .......... .......... .......... .......... .......... .......... 140 ATTCTGCACG GAAGGAAAGG CTTACTAACC TTTTTCCTCT AATTTTCCAC ATTGTTACAG 4604 .......... .......... .......... .......... .......... .......... 140 GAAGGAAAAC TGAAGCCACA TGTGAAGTCA GAGCCCATCC CTGAAGTCAA TGACGAACCT 4664 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAGGAAAAC TGAAGCCACA TGTGAAGTCA GAGCCCATCC CTGAAGTCAA TGACGAACCT 200 GTTAAGGTGG TTGTTAGGGA TACCCTCCAG GATATGGTTT ACAAATCGGG AAAAAATG 4722 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||| GTTAAGGTGG TTGTTAGGGA TACCCTCCAG GATATGGTTT ACAAATCGGG AAAAAATG 258 hqPGS_C06HBa0054K13.1-11+_SGN-E273849+ (4245 4264,4360 4479,4605 4722) ******************************************************************************** EST sequence 95 +strand 257 n (File: SGN-E247634+) 1 TCAAGGTGCT TTTGAGTACT TCGGACTGAA GCCGGAACAG GCACCTGTGA TCATCATAAT 61 GGACGCTGAT GAACAAAAGT ATATTAAGGA CCATGTGGAA CCTGATGCCA TTGCTGCTTA 121 CTTGAAGGAT TACAAGGAAT GAAAACTGAA GCCACATGTG AAGTCAGAGC CCATCCCTGA 181 AGTCAATGAC GAACCTGTTA AGGTGGTTGT TAGGGATACC CTCCAGGATA TGGTTTACAA 241 ATCGGGAAAA AATGTGC Predicted gene structure (within gDNA segment 3618 to 4982): Exon 1 4249 4264 ( 16 n); cDNA 1 16 ( 16 n); score: 1.000 Intron 1 4265 4359 ( 95 n); Pd: 0.997 (s: 0), Pa: 0.858 (s: 1.00) Exon 2 4360 4479 ( 120 n); cDNA 17 136 ( 120 n); score: 1.000 Intron 2 4480 4604 ( 125 n); Pd: 1.000 (s: 1.00), Pa: 0.984 (s: 0.98) Exon 3 4605 4722 ( 118 n); cDNA 137 254 ( 118 n); score: 0.992 MATCH C06HBa0054K13.1-11+ SGN-E247634+ 0.996 254 0.988 C PGS_C06HBa0054K13.1-11+_SGN-E247634+ (4249 4264,4360 4479,4605 4722) Alignment (genomic DNA sequence = upper lines): TCAAGGTGCT TTTGAGGTTG GTTAAAATTT TCAACTATCT GATTACAGTG TCATTGTATC 4308 |||||||||| |||||| TCAAGGTGCT TTTGAG.... .......... .......... .......... .......... 16 CATGATCACG TAAAAAGGCG CGTTGAACAT TCGTTTTATT TGGAATTGCA GTACTTCGGA 4368 ||||||||| .......... .......... .......... .......... .......... .TACTTCGGA 25 CTGAAGCCGG AACAGGCACC TGTGATCATC ATAATGGACG CTGATGAACA AAAGTATATT 4428 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTGAAGCCGG AACAGGCACC TGTGATCATC ATAATGGACG CTGATGAACA AAAGTATATT 85 AAGGACCATG TGGAACCTGA TGCCATTGCT GCTTACTTGA AGGATTACAA GGTGATGCAT 4488 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| | AAGGACCATG TGGAACCTGA TGCCATTGCT GCTTACTTGA AGGATTACAA G......... 136 CCTCTTCTTT TTCTTGGATA TATTTTGGAA TGAAAGCGTT GTTAATTGTG AACAATATTC 4548 .......... .......... .......... .......... .......... .......... 136 TGCACGGAAG GAAAGGCTTA CTAACCTTTT TCCTCTAATT TTCCACATTG TTACAGGAAG 4608 ||| .......... .......... .......... .......... .......... ......GAAT 140 GAAAACTGAA GCCACATGTG AAGTCAGAGC CCATCCCTGA AGTCAATGAC GAACCTGTTA 4668 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAAACTGAA GCCACATGTG AAGTCAGAGC CCATCCCTGA AGTCAATGAC GAACCTGTTA 200 AGGTGGTTGT TAGGGATACC CTCCAGGATA TGGTTTACAA ATCGGGAAAA AATG 4722 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||| AGGTGGTTGT TAGGGATACC CTCCAGGATA TGGTTTACAA ATCGGGAAAA AATG 254 hqPGS_C06HBa0054K13.1-11+_SGN-E247634+ (4249 4264,4360 4479,4605 4722) ******************************************************************************** EST sequence 45 +strand 260 n (File: SGN-E253878+) 1 TCATCATAAT GGACGCTCAT GAACAAAAGT ATATTAAGGA CCATGTGGAA CCTGATGCCA 61 TTGCTGCTTA CTTGAAGGAT TACAAGGAAG GAAAACTGAA GCCACATGTG AAGTCAGAGC 121 CCATCCCTGA AGTCAATGAC GAACCTGTTA AGGTGGTTGT TAGGGATACC CTCCAAGATA 181 TGGTTTACAA ATCGGGAAAA AATGTGCTGT TAGAGTTCTA TGCACCTTGG TGTGGCCACT 241 GCAAGAGTCT GGCTCCAATT Predicted gene structure (within gDNA segment 3794 to 4982): Exon 1 4394 4479 ( 86 n); cDNA 1 86 ( 86 n); score: 0.988 Intron 1 4480 4604 ( 125 n); Pd: 1.000 (s: 1.00), Pa: 0.984 (s: 1.00) Exon 2 4605 4722 ( 118 n); cDNA 87 204 ( 118 n); score: 0.992 MATCH C06HBa0054K13.1-11+ SGN-E253878+ 0.990 204 0.785 C PGS_C06HBa0054K13.1-11+_SGN-E253878+ (4394 4479,4605 4722) Alignment (genomic DNA sequence = upper lines): TCATCATAAT GGACGCTGAT GAACAAAAGT ATATTAAGGA CCATGTGGAA CCTGATGCCA 4453 |||||||||| ||||||| || |||||||||| |||||||||| |||||||||| |||||||||| TCATCATAAT GGACGCTCAT GAACAAAAGT ATATTAAGGA CCATGTGGAA CCTGATGCCA 60 TTGCTGCTTA CTTGAAGGAT TACAAGGTGA TGCATCCTCT TCTTTTTCTT GGATATATTT 4513 |||||||||| |||||||||| |||||| TTGCTGCTTA CTTGAAGGAT TACAAG.... .......... .......... .......... 86 TGGAATGAAA GCGTTGTTAA TTGTGAACAA TATTCTGCAC GGAAGGAAAG GCTTACTAAC 4573 .......... .......... .......... .......... .......... .......... 86 CTTTTTCCTC TAATTTTCCA CATTGTTACA GGAAGGAAAA CTGAAGCCAC ATGTGAAGTC 4633 ||||||||| |||||||||| |||||||||| .......... .......... .......... .GAAGGAAAA CTGAAGCCAC ATGTGAAGTC 115 AGAGCCCATC CCTGAAGTCA ATGACGAACC TGTTAAGGTG GTTGTTAGGG ATACCCTCCA 4693 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAGCCCATC CCTGAAGTCA ATGACGAACC TGTTAAGGTG GTTGTTAGGG ATACCCTCCA 175 GGATATGGTT TACAAATCGG GAAAAAATG 4722 ||||||||| |||||||||| ||||||||| AGATATGGTT TACAAATCGG GAAAAAATG 204 hqPGS_C06HBa0054K13.1-11+_SGN-E253878+ (4394 4479,4605 4722) ******************************************************************************** EST sequence 37 +strand 734 n (File: SGN-E552339+) 1 GGATCCCCCG GGCTGCAGGA CAAAAGTATA TTAAGGACCA TGTGGAACCT GATGCCATTG 61 CTGCTTACTT GAAGGATTAC AAGGAAGGAA AACTGAAGCC ACATGTGAAG TCAGAGCCCA 121 TCCCTGAAGT CAATGACGAA CCTGTTAAGG TGGTTGTTAG GGATACCCTC CAGGATATGG 181 TTTACAAATC GGGAAAAAAT GTGCTGTTAG AGTTCTATGC ACCTTGGTGT GGCCACTGCA 241 AGAGTCTGGC TCCAATTTTG GATGAAGTGG CTGTATCATT TGAAAGCGAT CCTGATGTTC 301 TCATTGCAAA ACTGGACGCA ACCGCAAATG ATCTCCCGAA AGGTGACTTT GATGTTCAGG 361 GATTCCCTAC TATGTACTTC AGATCCGCCT CTGGTAACTT GTCACAGTAC AATGGTGAGA 421 GAACAAAAGA GGCTATCATC GAATTCATCG AGAAGAATCG TGGCAAGCCT GCTCAGTCAG 481 ACTCTGCCAA AGTCGATTCA GCAAAGGATG AACTTTAGAG GACTCTAGGA ACATTGTGTA 541 CTGGTGGATT CAAGTTTTGT TGGAAGCATT GTGTTTCTGG TGAATTCGAC CTCCCACCGG 601 ACTACTGCTC TCTCCCAACG CTTCCGTTGT AGTTTTTGGA GCTTTTCAGC GCCAATAAAA 661 CGGTTGTATG TATCCATTTT GTGTATCGAA TGTAGCTGGA TTATGAGTTT ATATTATATC 721 TATTGAGAAG TTCT Predicted gene structure (within gDNA segment 3626 to 4982): Exon 1 4399 4479 ( 81 n); cDNA 3 83 ( 81 n); score: 0.877 Intron 1 4480 4604 ( 125 n); Pd: 1.000 (s: 1.00), Pa: 0.984 (s: 1.00) Exon 2 4605 4722 ( 118 n); cDNA 84 201 ( 118 n); score: 1.000 MATCH C06HBa0054K13.1-11+ SGN-E552339+ 0.950 199 0.271 C PGS_C06HBa0054K13.1-11+_SGN-E552339+ (4399 4479,4605 4722) Alignment (genomic DNA sequence = upper lines): ATAATGGACG CTGATGAACA AAAGTATATT AAGGACCATG TGGAACCTGA TGCCATTGCT 4458 || | ||| | ||| |||||||||| |||||||||| |||||||||| |||||||||| ATCCCCCGGG CTGCAGGACA AAAGTATATT AAGGACCATG TGGAACCTGA TGCCATTGCT 62 GCTTACTTGA AGGATTACAA GGTGATGCAT CCTCTTCTTT TTCTTGGATA TATTTTGGAA 4518 |||||||||| |||||||||| | GCTTACTTGA AGGATTACAA G......... .......... .......... .......... 83 TGAAAGCGTT GTTAATTGTG AACAATATTC TGCACGGAAG GAAAGGCTTA CTAACCTTTT 4578 .......... .......... .......... .......... .......... .......... 83 TCCTCTAATT TTCCACATTG TTACAGGAAG GAAAACTGAA GCCACATGTG AAGTCAGAGC 4638 |||| |||||||||| |||||||||| |||||||||| .......... .......... ......GAAG GAAAACTGAA GCCACATGTG AAGTCAGAGC 117 CCATCCCTGA AGTCAATGAC GAACCTGTTA AGGTGGTTGT TAGGGATACC CTCCAGGATA 4698 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCATCCCTGA AGTCAATGAC GAACCTGTTA AGGTGGTTGT TAGGGATACC CTCCAGGATA 177 TGGTTTACAA ATCGGGAAAA AATG 4722 |||||||||| |||||||||| |||| TGGTTTACAA ATCGGGAAAA AATG 201 hqPGS_C06HBa0054K13.1-11+_SGN-E552339+ (4399 4479,4605 4722) ******************************************************************************** EST sequence 83 +strand 513 n (File: SGN-E244435+) 1 GCTGATGAAC AAAAGTATAT TAAGGACCAT GTGGAACCTG ATGCCATTGC TGCTTACTTG 61 AAGGATTACA AGGAAGGAAA ACTGAAGCCA CATGTGAAGT CAGAGCCCAT CCCTGAAGTC 121 AATGACGAAC CTGTTAAGGT GGTTGTTAGG GATACCCTCC AGGATATGGT TTACAAATCG 181 GGAAAAAATG TGCTGTTAGA GTTCTATGCA CCTTGGTGTG GCCACTGCAA GAGTCTGGCT 241 CCAATTTTGG ATGAAGAGGC TGTATCATTT GAAAGCGATC CTGATGTTCT CATTGCAAAA 301 CTGGACGCAA CCGTAAATGA TCTCCCAAAA GGTGACTTTG ATGATCAGGG ATTCCCTACT 361 ATGTACTTCA GATCCGCCTC TGGTAACTTG TCACAGGACA ATGGTGAGAG AACAAATGAG 421 GCTATCATCG AATTCATCGA GAAGAATCGT GGCTAGCCTG CTCAGTCAGA CTCTGCCAAA 481 GTGGATTCAG CAAAGGATGA ACTTTAGAGG ACT Predicted gene structure (within gDNA segment 3808 to 4982): Exon 1 4408 4479 ( 72 n); cDNA 1 72 ( 72 n); score: 1.000 Intron 1 4480 4604 ( 125 n); Pd: 1.000 (s: 1.00), Pa: 0.984 (s: 1.00) Exon 2 4605 4722 ( 118 n); cDNA 73 190 ( 118 n); score: 1.000 MATCH C06HBa0054K13.1-11+ SGN-E244435+ 1.000 190 0.370 C PGS_C06HBa0054K13.1-11+_SGN-E244435+ (4408 4479,4605 4722) Alignment (genomic DNA sequence = upper lines): GCTGATGAAC AAAAGTATAT TAAGGACCAT GTGGAACCTG ATGCCATTGC TGCTTACTTG 4467 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTGATGAAC AAAAGTATAT TAAGGACCAT GTGGAACCTG ATGCCATTGC TGCTTACTTG 60 AAGGATTACA AGGTGATGCA TCCTCTTCTT TTTCTTGGAT ATATTTTGGA ATGAAAGCGT 4527 |||||||||| || AAGGATTACA AG........ .......... .......... .......... .......... 72 TGTTAATTGT GAACAATATT CTGCACGGAA GGAAAGGCTT ACTAACCTTT TTCCTCTAAT 4587 .......... .......... .......... .......... .......... .......... 72 TTTCCACATT GTTACAGGAA GGAAAACTGA AGCCACATGT GAAGTCAGAG CCCATCCCTG 4647 ||| |||||||||| |||||||||| |||||||||| |||||||||| .......... .......GAA GGAAAACTGA AGCCACATGT GAAGTCAGAG CCCATCCCTG 115 AAGTCAATGA CGAACCTGTT AAGGTGGTTG TTAGGGATAC CCTCCAGGAT ATGGTTTACA 4707 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGTCAATGA CGAACCTGTT AAGGTGGTTG TTAGGGATAC CCTCCAGGAT ATGGTTTACA 175 AATCGGGAAA AAATG 4722 |||||||||| ||||| AATCGGGAAA AAATG 190 hqPGS_C06HBa0054K13.1-11+_SGN-E244435+ (4408 4479,4605 4722) ******************************************************************************** EST sequence 44 +strand 715 n (File: SGN-E553391+) 1 CAAAAGTATA TTAAGGACCA TGTGGAACCT GATGCCATTG CTGCTTACTT GAAGGATTAC 61 AAGGAAGGAA AACTGAAGCC ACATGTGAAG TCAGAGCCCA TCCCTGAAGT CAATGACGAA 121 CCTGTTAAGG TGGTTGTTAG GGATACCCTC CAGGATATGG TTTACAAATC GGGAAAAAAT 181 GTGCTGTTAG AGTTCTATGC ACCTTGGTGT GGCCACTGCA AGAGTCTGGC TCCAATTTTG 241 GATGAAGTGG CTGTATCATT TGAAAGCGAT CCTGATGTTC TCATTGCAAA ACTGGACGCA 301 ACCGCAAATG ATCTCCCGAA AGGTGACTTT GATGTTCAGG GATTCCCTAC TATGTACTTC 361 AGATCCGCCT CTGGTAACTT GTCACAGTAC AATGGTGAGA GAACAAAAGA GGCTATCATC 421 GAATTCATCG AGAAGAATCG TGGCAAGCCT GCTCAGTCAG ACTCTGCCAA AGTCGATTCA 481 GCAAAGGATG AACTTTAGAG GACTCTAGGA ACATTGTGTA CTGGTGGATT CAAGTTTTGT 541 TGGAAGCATT GTGTTTCTGG TGAATTCGAC CTCCCACCGG ACTACTGCTC TCTCCCAACG 601 CTTCCGTTGT AGTTTTTGGA GCTTTTCAGC GCCAATAAAA CGGTTGTATG TATCCATTTT 661 GTGTATCGAA TGTAGCTGGA TTATGAGTTT ATATTATATC TATTGAGAAG TTCTC Predicted gene structure (within gDNA segment 3817 to 4982): Exon 1 4417 4479 ( 63 n); cDNA 1 63 ( 63 n); score: 1.000 Intron 1 4480 4604 ( 125 n); Pd: 1.000 (s: 1.00), Pa: 0.984 (s: 1.00) Exon 2 4605 4722 ( 118 n); cDNA 64 181 ( 118 n); score: 1.000 MATCH C06HBa0054K13.1-11+ SGN-E553391+ 1.000 181 0.253 C PGS_C06HBa0054K13.1-11+_SGN-E553391+ (4417 4479,4605 4722) Alignment (genomic DNA sequence = upper lines): CAAAAGTATA TTAAGGACCA TGTGGAACCT GATGCCATTG CTGCTTACTT GAAGGATTAC 4476 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAAAGTATA TTAAGGACCA TGTGGAACCT GATGCCATTG CTGCTTACTT GAAGGATTAC 60 AAGGTGATGC ATCCTCTTCT TTTTCTTGGA TATATTTTGG AATGAAAGCG TTGTTAATTG 4536 ||| AAG....... .......... .......... .......... .......... .......... 63 TGAACAATAT TCTGCACGGA AGGAAAGGCT TACTAACCTT TTTCCTCTAA TTTTCCACAT 4596 .......... .......... .......... .......... .......... .......... 63 TGTTACAGGA AGGAAAACTG AAGCCACATG TGAAGTCAGA GCCCATCCCT GAAGTCAATG 4656 || |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ........GA AGGAAAACTG AAGCCACATG TGAAGTCAGA GCCCATCCCT GAAGTCAATG 115 ACGAACCTGT TAAGGTGGTT GTTAGGGATA CCCTCCAGGA TATGGTTTAC AAATCGGGAA 4716 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACGAACCTGT TAAGGTGGTT GTTAGGGATA CCCTCCAGGA TATGGTTTAC AAATCGGGAA 175 AAAATG 4722 |||||| AAAATG 181 hqPGS_C06HBa0054K13.1-11+_SGN-E553391+ (4417 4479,4605 4722) ******************************************************************************** EST sequence 94 +strand 704 n (File: SGN-E344174+) 1 AAAAGTATAT TAAGGACCAT GTGGAACCTG ATGCCATTGC TGCTTACTTG AAGGATTACA 61 AGGAAGGAAA ACTGAAGCCA CATGTGAAGT CAGAGCCCAT CCCTGAAGTC AATGACGAAC 121 CTGTTAAGGT GGTTGTTAGG GATACCCTCC AGGATATGGT TTACAAATCG GGAAAAAATG 181 TGCTGTTAGA GTTCTATGCA CCTTGGTGTG GCCACTGCAA GAGTCTGGCT CCAATTTTGG 241 ATGAAGTGGC TGTATCATTT GAAAGCGATC CTGATGTTCT CATTGCAAAA CTGGACGCAA 301 CCGCAAATGA TCTCCCGAAA GGTGACTTTG ATGTTCAGGG ATTCCCTACT ATGTACTTCA 361 GATCCGCCTC TGGTAACTTG TCACAGTACA ATGGTGAGAG AACAAAAGAG GCTATCATCG 421 AATTCATCGA GAAGAATCGT GGCAAGCCTG CTCAGTCAGA CTCTGCCAAA GTCGATTCAG 481 CAAAGGATGA ACTTTAGAGG ACTCTAGGAA CATTGTGTAC TGGTGGATTC AAGTTTTGTT 541 GGAAGCATTG TGTTTCTGGT GAATTCGACC TCCCACCGGA CTACTGCTCT CTCCCAACGC 601 TTCCGTTGTA GTTTTTGGAG CTTTTCAGCG CCAATAAAAC GGTTGTATGT ATCCATTTTG 661 TGTATCGAAT GTAGCTGGAT TATGAGTTTA TATTATATCT ATTG Predicted gene structure (within gDNA segment 3818 to 4982): Exon 1 4418 4479 ( 62 n); cDNA 1 62 ( 62 n); score: 1.000 Intron 1 4480 4604 ( 125 n); Pd: 1.000 (s: 1.00), Pa: 0.984 (s: 1.00) Exon 2 4605 4722 ( 118 n); cDNA 63 180 ( 118 n); score: 1.000 MATCH C06HBa0054K13.1-11+ SGN-E344174+ 1.000 180 0.256 C PGS_C06HBa0054K13.1-11+_SGN-E344174+ (4418 4479,4605 4722) Alignment (genomic DNA sequence = upper lines): AAAAGTATAT TAAGGACCAT GTGGAACCTG ATGCCATTGC TGCTTACTTG AAGGATTACA 4477 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAAGTATAT TAAGGACCAT GTGGAACCTG ATGCCATTGC TGCTTACTTG AAGGATTACA 60 AGGTGATGCA TCCTCTTCTT TTTCTTGGAT ATATTTTGGA ATGAAAGCGT TGTTAATTGT 4537 || AG........ .......... .......... .......... .......... .......... 62 GAACAATATT CTGCACGGAA GGAAAGGCTT ACTAACCTTT TTCCTCTAAT TTTCCACATT 4597 .......... .......... .......... .......... .......... .......... 62 GTTACAGGAA GGAAAACTGA AGCCACATGT GAAGTCAGAG CCCATCCCTG AAGTCAATGA 4657 ||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......GAA GGAAAACTGA AGCCACATGT GAAGTCAGAG CCCATCCCTG AAGTCAATGA 115 CGAACCTGTT AAGGTGGTTG TTAGGGATAC CCTCCAGGAT ATGGTTTACA AATCGGGAAA 4717 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGAACCTGTT AAGGTGGTTG TTAGGGATAC CCTCCAGGAT ATGGTTTACA AATCGGGAAA 175 AAATG 4722 ||||| AAATG 180 hqPGS_C06HBa0054K13.1-11+_SGN-E344174+ (4418 4479,4605 4722) ******************************************************************************** EST sequence 27 +strand 744 n (File: SGN-E551806+) 1 CAAAGTATAT TAAGGACCAT GTGGAACCTG ATGCCATTGC TGCTTACTTG AAGGATTACA 61 AGGAAGGAAA ACTGAAGCCA CATGTGAAGT CAGAGCCCAT CCCTGAAGTC AATGACGAAC 121 CTGTTAAGGT GGTTGTTAGG GATACCCTCC AGGATATGGT TTACAAATCG GGAAAAAATG 181 TGCTGTTAGA GTTCTATGCA CCTTGGTGTG GCCACTGCAA GAGTCTGGCT CCAATTTTGG 241 ATGAAGTGGC TGTATCATTT GAAAGCGATC CTGATGTTCT CATTGCAAAA CTGGACGCAA 301 CCGCAAATGA TCTCCCGAAA GGTGACTTTG ATGTTCAGGG ATTCCCTACT ATGTACTTCA 361 GATCCGCCTC TGGTAACTTG TCACAGTACA ATGGTGAGAG AACAAAAGAG GCTATCATCG 421 AATTCATCGA GAAGAATCGT GGCAAGCCTG CTCAGTCAGA CTCTGCCAAA GTCGATTCAG 481 CAAAGGATGA ACTTTAGAGG ACTCTAGGAA CATTGTGTAC TGGTGGATTC AAGTTTTGTT 541 GGAAGCATTG TGTTTCTGGT GAATTCGACC TCCCACCGGA CTACTGCTCT CTCCCAACGC 601 TTCCGTTGTA GTTTTTGGAG CTTTTCAGCG CCAATAAAAC GGTTGTATGT ATCCATTTTG 661 TGTATCGAAT GTAGCTGGAT TATGAGTTTA TATTATATCT ATTGAGAAGT TCTCCAAAAA 721 NAAAAAAAAA AAAAAAAAAA AAAA Predicted gene structure (within gDNA segment 3809 to 4982): Exon 1 4419 4479 ( 61 n); cDNA 2 62 ( 61 n); score: 1.000 Intron 1 4480 4604 ( 125 n); Pd: 1.000 (s: 1.00), Pa: 0.984 (s: 1.00) Exon 2 4605 4722 ( 118 n); cDNA 63 180 ( 118 n); score: 1.000 PPA cDNA 716 744 MATCH C06HBa0054K13.1-11+ SGN-E551806+ 1.000 179 0.241 C PGS_C06HBa0054K13.1-11+_SGN-E551806+ (4419 4479,4605 4722) Alignment (genomic DNA sequence = upper lines): AAAGTATATT AAGGACCATG TGGAACCTGA TGCCATTGCT GCTTACTTGA AGGATTACAA 4478 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAGTATATT AAGGACCATG TGGAACCTGA TGCCATTGCT GCTTACTTGA AGGATTACAA 61 GGTGATGCAT CCTCTTCTTT TTCTTGGATA TATTTTGGAA TGAAAGCGTT GTTAATTGTG 4538 | G......... .......... .......... .......... .......... .......... 62 AACAATATTC TGCACGGAAG GAAAGGCTTA CTAACCTTTT TCCTCTAATT TTCCACATTG 4598 .......... .......... .......... .......... .......... .......... 62 TTACAGGAAG GAAAACTGAA GCCACATGTG AAGTCAGAGC CCATCCCTGA AGTCAATGAC 4658 |||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ......GAAG GAAAACTGAA GCCACATGTG AAGTCAGAGC CCATCCCTGA AGTCAATGAC 116 GAACCTGTTA AGGTGGTTGT TAGGGATACC CTCCAGGATA TGGTTTACAA ATCGGGAAAA 4718 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAACCTGTTA AGGTGGTTGT TAGGGATACC CTCCAGGATA TGGTTTACAA ATCGGGAAAA 176 AATG 4722 |||| AATG 180 hqPGS_C06HBa0054K13.1-11+_SGN-E551806+ (4419 4479,4605 4722) ******************************************************************************** EST sequence 74 +strand 713 n (File: SGN-E556457+) 1 AAAGTATATT AAGGACCATG TGGAACCTGA TGCCATTGCT GCTTACTTGA AGGATTACAA 61 GGAAGGAAAA CTGAAGCCAC ATGTGAAGTC AGAGCCCATC CCTGAAGTCA ATGACGAACC 121 TGTTAAGGTG GTTGTTAGGG ATACCCTCCA GGATATGGTT TACAAATCGG GAAAAAATGT 181 GCTGTTAGAG TTCTATGCAC CTTGGTGTGG CCACTGCAAG AGTCTGGCTC CAATTTTGGA 241 TGAAGTGGCT GTATCATTTG AAAGCGATCC TGATGTTCTC ATTGCAAAAC TGGACGCAAC 301 CGCAAATGAT CTCCCGAAAG GTGACTTTGA TGTTCAGGGA TTCCCTACTA TGTACTTCAG 361 ATCCGCCTCT GGTAACTTGT CACAGTACAA TGGTGAGAGA ACAAAAGAGG CTATCATCGA 421 ATTCATCGAG AAGAATCGTG GCAAGCCTGC TCAGTCAGAC TCTGCCAAAG TCGATTCAGC 481 AAAGGATGAA CTTTAGAGGA CTCTAGGAAC ATTGTGTACT GGTGGATTCA AGTTTTGTTG 541 GAAGCATTGT GTTTCTGGTG AATTCGACCT CCCACCGGAC TACTGCTCTC TCCCAACGCT 601 TCCGTTGTAG TTTTTGGAGC TTTTCAGCGC CAATAAAACG GTTGTATGTA TCCATTTTGT 661 GTATCGAATG TAGCTGGATT ATGAGTTTAT ATTGTATCTA TTGAGAAGTT CTC Predicted gene structure (within gDNA segment 3819 to 4982): Exon 1 4419 4479 ( 61 n); cDNA 1 61 ( 61 n); score: 1.000 Intron 1 4480 4604 ( 125 n); Pd: 1.000 (s: 1.00), Pa: 0.984 (s: 1.00) Exon 2 4605 4722 ( 118 n); cDNA 62 179 ( 118 n); score: 1.000 MATCH C06HBa0054K13.1-11+ SGN-E556457+ 1.000 179 0.251 C PGS_C06HBa0054K13.1-11+_SGN-E556457+ (4419 4479,4605 4722) Alignment (genomic DNA sequence = upper lines): AAAGTATATT AAGGACCATG TGGAACCTGA TGCCATTGCT GCTTACTTGA AGGATTACAA 4478 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAGTATATT AAGGACCATG TGGAACCTGA TGCCATTGCT GCTTACTTGA AGGATTACAA 60 GGTGATGCAT CCTCTTCTTT TTCTTGGATA TATTTTGGAA TGAAAGCGTT GTTAATTGTG 4538 | G......... .......... .......... .......... .......... .......... 61 AACAATATTC TGCACGGAAG GAAAGGCTTA CTAACCTTTT TCCTCTAATT TTCCACATTG 4598 .......... .......... .......... .......... .......... .......... 61 TTACAGGAAG GAAAACTGAA GCCACATGTG AAGTCAGAGC CCATCCCTGA AGTCAATGAC 4658 |||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ......GAAG GAAAACTGAA GCCACATGTG AAGTCAGAGC CCATCCCTGA AGTCAATGAC 115 GAACCTGTTA AGGTGGTTGT TAGGGATACC CTCCAGGATA TGGTTTACAA ATCGGGAAAA 4718 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAACCTGTTA AGGTGGTTGT TAGGGATACC CTCCAGGATA TGGTTTACAA ATCGGGAAAA 175 AATG 4722 |||| AATG 179 hqPGS_C06HBa0054K13.1-11+_SGN-E556457+ (4419 4479,4605 4722) ******************************************************************************** EST sequence 113 +strand 612 n (File: SGN-E279446+) 1 CATGTGGAAC CTGATGCCAT TGCTGCTTAC TTGAAGGATT ACAAGGAAGG AAAACTGAAG 61 CCACATGTGA AGTCAGAGCC CATCCCTGAA GTCAATGACG AACCTGTTAA GGTGGTTGTT 121 AGGGATACCC TCCAGGATAT GGTTTACAAA TCGGGAAAAA ATGTGCTGTT AGAGTTCTAT 181 GCACCTTGGT GTGGCCACTG CAAGAGTCTG GCTCCAATTT TGGATGAAGT GGCTGTATCA 241 TTTGAAAGCG ATCCTGATGT TCTCATTGCA AAACTGGACG CAACCGCAAA TGATCTCCCG 301 AAAGGTGACT TTGATGTTCA GGGATTCCCT ACTATGTACT TCAGATCCGC CTCTGGTAAC 361 TTGTCACAGT ACAATGGTGA GAGAACAAAA GAGGCTATCA TCGAATTCAT CGAGAAGAAT 421 CGTGGCAAGC CTGCTCAGTC AGACTCTGCC AAAGTCGATT CAGCAAAGGA TGAACTTTAG 481 AGGACTCTAG GAACATTGTG TACTGGTGGA TTCAAGTTTT GTTGGAAGCA TTGTGTTTCT 541 GGTGAATTCG ACCTCCCACC GGACTACTGC TCTCTCCCAA CGCTTNCGTT GTAGTTTTTG 601 GAGCTTTTCA GC Predicted gene structure (within gDNA segment 3835 to 4982): Exon 1 4435 4479 ( 45 n); cDNA 1 45 ( 45 n); score: 1.000 Intron 1 4480 4604 ( 125 n); Pd: 1.000 (s: 1.00), Pa: 0.984 (s: 1.00) Exon 2 4605 4722 ( 118 n); cDNA 46 163 ( 118 n); score: 1.000 MATCH C06HBa0054K13.1-11+ SGN-E279446+ 1.000 163 0.266 C PGS_C06HBa0054K13.1-11+_SGN-E279446+ (4435 4479,4605 4722) Alignment (genomic DNA sequence = upper lines): CATGTGGAAC CTGATGCCAT TGCTGCTTAC TTGAAGGATT ACAAGGTGAT GCATCCTCTT 4494 |||||||||| |||||||||| |||||||||| |||||||||| ||||| CATGTGGAAC CTGATGCCAT TGCTGCTTAC TTGAAGGATT ACAAG..... .......... 45 CTTTTTCTTG GATATATTTT GGAATGAAAG CGTTGTTAAT TGTGAACAAT ATTCTGCACG 4554 .......... .......... .......... .......... .......... .......... 45 GAAGGAAAGG CTTACTAACC TTTTTCCTCT AATTTTCCAC ATTGTTACAG GAAGGAAAAC 4614 |||||||||| .......... .......... .......... .......... .......... GAAGGAAAAC 55 TGAAGCCACA TGTGAAGTCA GAGCCCATCC CTGAAGTCAA TGACGAACCT GTTAAGGTGG 4674 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAAGCCACA TGTGAAGTCA GAGCCCATCC CTGAAGTCAA TGACGAACCT GTTAAGGTGG 115 TTGTTAGGGA TACCCTCCAG GATATGGTTT ACAAATCGGG AAAAAATG 4722 |||||||||| |||||||||| |||||||||| |||||||||| |||||||| TTGTTAGGGA TACCCTCCAG GATATGGTTT ACAAATCGGG AAAAAATG 163 hqPGS_C06HBa0054K13.1-11+_SGN-E279446+ (4435 4479,4605 4722) ******************************************************************************** EST sequence 127 -strand 602 n (File: SGN-E548944-) 1 TTAAGGTGGT TGTTAGGGAT ACCCTCCAGG ATATGGTTTA CAAATCGGGA AAAAAATGTG 61 CTGTTAGAGT TCTATGCCCC TTGGTGTGGC CACTGCAAGA GTCTGGCTCC AATTTTGGAT 121 GAAGTGGCTG TATCATTTGA AAGCGATCCT GATGTTCTCA TTGCAAAACT GGACGCAACC 181 GCAAATGATC TCCCGAAAGG TGACTTTGAT GTTCAGGGAT TCCCTACTAT GTACTTCAGA 241 TCCGCCTCTG GTAACTTGTC ACAGTACAAT GGTGAGAGAA CAAAAGAGGC TATCATCGAA 301 TTCATCGAGA AGAATCGTGG CAAGCCTGCT CAGTCAGACT CTGCCAAAGT CGATTCAGCA 361 AAGGATGAAC TTTAGAGGAC TCTAGGAACA TTGTGTACTG GTGGATTCAA GTTTTGTTGG 421 AAGCATTGTG TTTCTGGTGA ATTCGACCTC CCACCGGACT ACTGCTCTCT CCCAACGCTT 481 CCGTTGTAGT TTTTGGAGCT TTTCAGCGCC AATAAAACGG TTGTATGTAT CCATTTTGTG 541 TATCGAATGT AGCTGGATTA TGAGTTTATA TTATATCTAT TGAGAATCTC TCCTTAGGAA 601 AA Predicted gene structure (within gDNA segment 4056 to 4982): Exon 1 4666 4722 ( 57 n); cDNA 1 57 ( 57 n); score: 0.965 Intron 1 4723 4845 ( 123 n); Pd: 0.838 (s: 0.96), Pa: 0.585 (s: 0) Exon 2 4846 4866 ( 21 n); cDNA 58 76 ( 19 n); score: 0.667 MATCH C06HBa0054K13.1-11+ SGN-E548944- 0.965 78 0.130 C PGS_C06HBa0054K13.1-11+_SGN-E548944- (4666 4722,4846 4866) Alignment (genomic DNA sequence = upper lines): TTAAGGTGGT TGTTAGGGAT ACCCTCCAGG ATATGGTTTA CAAATCGGGA AAAAATGGTG 4725 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||| TTAAGGTGGT TGTTAGGGAT ACCCTCCAGG ATATGGTTTA CAAATCGGGA AAAAAAT... 57 CGTGTCTGTC AATATTTTAA TCTTTATTCG ATGTCTTGGT TAAGAAAGAG TTGTTTCTTT 4785 .......... .......... .......... .......... .......... .......... 57 GTTGTACCAT TTCGTTCTCC CTCTTTGGTG TTTACTTGCA TTTCTTTACT AGTGTGTAAG 4845 .......... .......... .......... .......... .......... .......... 57 GTCGTGATGA GGAGTTGGAT G 4866 || || | | ||||| || | GTGCTG-TTA -GAGTTCTAT G 76 hqPGS_C06HBa0054K13.1-11+_SGN-E548944- (4666 4722,4846 4866) ******************************************************************************** EST sequence 41 +strand 816 n (File: SGN-E539993+) 1 TTTGGAATTG CAGTACTTCG GACTGAAGCC GGAACAGGCA CCTGTGATCA TCATAATGGA 61 CGCTGATGAA CAAAAGTATA TTAAGGACCA TGTGGAACCT GATGCCATTG CTGCTTACTT 121 GAAGGATTAC AAGGTGATGC ATCCTCTTCT TTTTCTTGGA TATATTTTGG AATGAAAGCG 181 TTGTTAATTG TGAACAATAT TCTGCACGGA AGGAAAGGCT TACTAACCTT TTTCCTCTAA 241 TTTTCCACAT TGTTACAGGA AGGAAAACTG AAGCCACATG TGAAGTCAGA GCCCATCCCT 301 GAAGTCAATG ACGAACCTGT TAAGGTGGTT GTTAGGGATA CCCTCCAGGA TATGGTTTAC 361 AAATCGGGAA AAAATGGTGC GTGTCTGTCA ATATTTTAAT CTTTATTCGA TGTCTTGGTT 421 AAGAAAGAGT TGTTTCTTTG TTGTACCATT TCGTTCTCCC TCTTTGGTGT TTACTTGCAT 481 TTCTTTACTA GTGTGTAAGG TCGTGATGAG GAGTTGGATG TCGTAAATTA ACTGATTGTG 541 GAACTATTAT ATGTAGTAGG AGAAAGAGGG AGCAGTCATC AGCTAATTGC CCGCGGGTTT 601 GACTTTAACA ATAGTTGTGC TCTCCTAAAT TATTATTCTT TTTGTCTGCT CAGTGCTGTT 661 AGAGTTCTAT GCACCTTGGT GTGGCCACTG CAAGAGTCTG GCTCCAATTT TGGATGAAGT 721 GGCTGTATCA TTTGAAAGCG ATCCTGATGT TCTCATTGCA AAACTGGTAA GAACTTTTTT 781 CATAAACTAA ACATGGATAT TTGATGCATG TATCTA Predicted gene structure (within gDNA segment 3747 to 4982): Exon 1 4347 4982 ( 636 n); cDNA 1 636 ( 636 n); score: 0.998 MATCH C06HBa0054K13.1-11+ SGN-E539993+ 0.998 636 0.779 C PGS_C06HBa0054K13.1-11+_SGN-E539993+ (4347 4982) Alignment (genomic DNA sequence = upper lines): TTTGGAATTG CAGTACTTCG GACTGAAGCC GGAACAGGCA CCTGTGATCA TCATAATGGA 4406 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTGGAATTG CAGTACTTCG GACTGAAGCC GGAACAGGCA CCTGTGATCA TCATAATGGA 60 CGCTGATGAA CAAAAGTATA TTAAGGACCA TGTGGAACCT GATGCCATTG CTGCTTACTT 4466 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGCTGATGAA CAAAAGTATA TTAAGGACCA TGTGGAACCT GATGCCATTG CTGCTTACTT 120 GAAGGATTAC AAGGTGATGC ATCCTCTTCT TTTTCTTGGA TATATTTTGG AATGAAAGCG 4526 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAGGATTAC AAGGTGATGC ATCCTCTTCT TTTTCTTGGA TATATTTTGG AATGAAAGCG 180 TTGTTAATTG TGAACAATAT TCTGCACGGA AGGAAAGGCT TACTAACCTT TTTCCTCTAA 4586 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGTTAATTG TGAACAATAT TCTGCACGGA AGGAAAGGCT TACTAACCTT TTTCCTCTAA 240 TTTTCCACAT TGTTACAGGA AGGAAAACTG AAGCCACATG TGAAGTCAGA GCCCATCCCT 4646 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTTCCACAT TGTTACAGGA AGGAAAACTG AAGCCACATG TGAAGTCAGA GCCCATCCCT 300 GAAGTCAATG ACGAACCTGT TAAGGTGGTT GTTAGGGATA CCCTCCAGGA TATGGTTTAC 4706 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAGTCAATG ACGAACCTGT TAAGGTGGTT GTTAGGGATA CCCTCCAGGA TATGGTTTAC 360 AAATCGGGAA AAAATGGTGC GTGTCTGTCA ATATTTTAAT CTTTATTCGA TGTCTTGGTT 4766 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAATCGGGAA AAAATGGTGC GTGTCTGTCA ATATTTTAAT CTTTATTCGA TGTCTTGGTT 420 AAGAAAGAGT TGTTTCTTTG TTGTACCATT TCGTTCTCCC TCTTTGGTGT TTACTTGCAT 4826 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGAAAGAGT TGTTTCTTTG TTGTACCATT TCGTTCTCCC TCTTTGGTGT TTACTTGCAT 480 TTCTTTACTA GTGTGTAAGG TCGTGATGAG GAGTTGGATG TCGTAAATTA ACTGATTGTG 4886 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCTTTACTA GTGTGTAAGG TCGTGATGAG GAGTTGGATG TCGTAAATTA ACTGATTGTG 540 GAACTATTAT ACGTAGTAGG AGAAAGAGGG AGCAGTCATC AGCTAATTGC CCGCGGGTTT 4946 |||||||||| | |||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAACTATTAT ATGTAGTAGG AGAAAGAGGG AGCAGTCATC AGCTAATTGC CCGCGGGTTT 600 GACTTTAACA ATAGTTGTGC TCTCCTAAAT TATTAT 4982 |||||||||| |||||||||| |||||||||| |||||| GACTTTAACA ATAGTTGTGC TCTCCTAAAT TATTAT 636 hqPGS_C06HBa0054K13.1-11+_SGN-E539993+ (4347 4982) ******************************************************************************** EST sequence 108 +strand 495 n (File: SGN-E288667+) 1 TTGGAATTGC AGTACTTCGG ACTGAAGCCG GAACAGGCAC CTGTGATCAT CATAATGGAC 61 GCTGATGAAC AAAAGTATAT TAAGGACCAT GTGGAACCTG ATGCCATTGC TGCTTACTTG 121 AAGGATTACA AGGTGATGCA TCCTCTTCTT TTTCTTGGAT ATATTTTGGA ATGAAAGCGT 181 TGTTAATTGT GAACAATATT CTGCACGGAA GGAAAGGCTT ACTAACCTTT TTCCTCTAAT 241 TTTCCACATT GTTACAGGAA GGAAAACTGA AGCCACATGT GAAGTCAGAG CCCATCCCTG 301 AAGTCAATGA CGAACCTGTT AAGGTGGTTG TTAGGGATAC CCTCCAGGAT ATGGTTTACA 361 AATCGGGAAA AAATGGTGCG TGTCTGTCAA TATTTTAATC TTTATTCGAT GTCTTGGTTA 421 AGAAAGAGTT TGTTCTTTGT TGTACCATTT CGTTCTCCCT CTTTGGTGTT TACTTGCATT 481 TCTTTACTAG TGTGT Predicted gene structure (within gDNA segment 3748 to 4982): Exon 1 4348 4842 ( 495 n); cDNA 1 495 ( 495 n); score: 0.996 MATCH C06HBa0054K13.1-11+ SGN-E288667+ 0.996 495 1.000 C PGS_C06HBa0054K13.1-11+_SGN-E288667+ (4348 4842) Alignment (genomic DNA sequence = upper lines): TTGGAATTGC AGTACTTCGG ACTGAAGCCG GAACAGGCAC CTGTGATCAT CATAATGGAC 4407 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGGAATTGC AGTACTTCGG ACTGAAGCCG GAACAGGCAC CTGTGATCAT CATAATGGAC 60 GCTGATGAAC AAAAGTATAT TAAGGACCAT GTGGAACCTG ATGCCATTGC TGCTTACTTG 4467 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTGATGAAC AAAAGTATAT TAAGGACCAT GTGGAACCTG ATGCCATTGC TGCTTACTTG 120 AAGGATTACA AGGTGATGCA TCCTCTTCTT TTTCTTGGAT ATATTTTGGA ATGAAAGCGT 4527 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGGATTACA AGGTGATGCA TCCTCTTCTT TTTCTTGGAT ATATTTTGGA ATGAAAGCGT 180 TGTTAATTGT GAACAATATT CTGCACGGAA GGAAAGGCTT ACTAACCTTT TTCCTCTAAT 4587 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTTAATTGT GAACAATATT CTGCACGGAA GGAAAGGCTT ACTAACCTTT TTCCTCTAAT 240 TTTCCACATT GTTACAGGAA GGAAAACTGA AGCCACATGT GAAGTCAGAG CCCATCCCTG 4647 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTCCACATT GTTACAGGAA GGAAAACTGA AGCCACATGT GAAGTCAGAG CCCATCCCTG 300 AAGTCAATGA CGAACCTGTT AAGGTGGTTG TTAGGGATAC CCTCCAGGAT ATGGTTTACA 4707 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGTCAATGA CGAACCTGTT AAGGTGGTTG TTAGGGATAC CCTCCAGGAT ATGGTTTACA 360 AATCGGGAAA AAATGGTGCG TGTCTGTCAA TATTTTAATC TTTATTCGAT GTCTTGGTTA 4767 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATCGGGAAA AAATGGTGCG TGTCTGTCAA TATTTTAATC TTTATTCGAT GTCTTGGTTA 420 AGAAAGAGTT GTTTCTTTGT TGTACCATTT CGTTCTCCCT CTTTGGTGTT TACTTGCATT 4827 |||||||||| |||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAAAGAGTT TGTTCTTTGT TGTACCATTT CGTTCTCCCT CTTTGGTGTT TACTTGCATT 480 TCTTTACTAG TGTGT 4842 |||||||||| ||||| TCTTTACTAG TGTGT 495 hqPGS_C06HBa0054K13.1-11+_SGN-E288667+ (4348 4842) ******************************************************************************** EST sequence 125 -strand 637 n (File: SGN-E246249-) 1 GAGCCCATCC CTGAAGTCAA TGACGAACCT GTTAAGGTGG TTGTTAGGGA TACCCTCCAG 61 GATATGGTTT ACAAATCGGG AAAAAATGTG CTGTTAGAGT TCTATGCACC TTGGTGTGGC 121 CACTGCAAGA GTCTGGCTCC AATTTTGGAT GAAGTGGCTG TATCATTTGA AAGCGATCCT 181 GATGTTCTCA TTGCAAAACT GGACGCAACC GCAAATGATC TCCCGAAAGG TGACTTTGAT 241 GTTCAGGGAT TCCCTACTAT GTACTTCAGA TCCGCCTCTG GTAACTTGTC ACAGTACAAT 301 GGTGAGAGAA CAAAAGAGGC TATCATCGAA TTCATCGAGA AGAATCGTGG CAAGCCTGCT 361 CAGTCAGACT CTGCCAAAGT CGATTCAGCA AAGGATGAAC TTTAGAGGAC TCTAGGAACA 421 TTGTGTACTG GTGGATTCAA GTTTTGTTGG AAGCATTGTG TTTCTGGTGA ATTCGACCTC 481 CCACCGGACT ACTGCTCTCT CCCAACGCTT CCGTTGTAGT TTTTGGAGCT TTTCAGCGCC 541 AATAAAACGG TTGTATGTAT CCATTTTGTG TATCGAATGT AGCTGGATTA TGAGTTTATA 601 TTATATCTAT TGAGAAGTTC TCCAACTTAA AAAAAAA Predicted gene structure (within gDNA segment 4025 to 4982): Exon 1 4635 4722 ( 88 n); cDNA 1 88 ( 88 n); score: 1.000 MATCH C06HBa0054K13.1-11+ SGN-E246249- 1.000 88 0.138 C PGS_C06HBa0054K13.1-11+_SGN-E246249- (4635 4722) Alignment (genomic DNA sequence = upper lines): GAGCCCATCC CTGAAGTCAA TGACGAACCT GTTAAGGTGG TTGTTAGGGA TACCCTCCAG 4694 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGCCCATCC CTGAAGTCAA TGACGAACCT GTTAAGGTGG TTGTTAGGGA TACCCTCCAG 60 GATATGGTTT ACAAATCGGG AAAAAATG 4722 |||||||||| |||||||||| |||||||| GATATGGTTT ACAAATCGGG AAAAAATG 88 hqPGS_C06HBa0054K13.1-11+_SGN-E246249- (4635 4722) Total number of EST alignments reported: 127 ________________________________________________________________________________ Predicted gene locations (1) in segment 1 to 4982: PGL 1 (+ strand): 1618 4982 AGS-1 (1618 1792,2969 2999,3123 3410,3509 3694,3810 3935,4130 4264,4360 4479,4605 4722,4846 4866) SCR (e 1.000 d 1.000 a 0.997,e 1.000 d 0.917 a 0.997,e 1.000 d 0.907 a 0.997,e 1.000 d 0.988 a 0.999,e 1.000 d 0.981 a 0.965,e 1.000 d 0.997 a 0.858,e 1.000 d 1.000 a 0.984,e 1.000 d 0.838 a 0.585,e 0.667) Exon 1 1618 1792 ( 175 n); score: 1.000 Intron 1 1793 2968 (1176 n); Pd: 1.000 Pa: 0.997 Exon 2 2969 2999 ( 31 n); score: 1.000 Intron 2 3000 3122 ( 123 n); Pd: 0.917 Pa: 0.997 Exon 3 3123 3410 ( 288 n); score: 1.000 Intron 3 3411 3508 ( 98 n); Pd: 0.907 Pa: 0.997 Exon 4 3509 3694 ( 186 n); score: 1.000 Intron 4 3695 3809 ( 115 n); Pd: 0.988 Pa: 0.999 Exon 5 3810 3935 ( 126 n); score: 1.000 Intron 5 3936 4129 ( 194 n); Pd: 0.981 Pa: 0.965 Exon 6 4130 4264 ( 135 n); score: 1.000 Intron 6 4265 4359 ( 95 n); Pd: 0.997 Pa: 0.858 Exon 7 4360 4479 ( 120 n); score: 1.000 Intron 7 4480 4604 ( 125 n); Pd: 1.000 Pa: 0.984 Exon 8 4605 4722 ( 118 n); score: 1.000 Intron 8 4723 4845 ( 123 n); Pd: 0.838 Pa: 0.585 Exon 9 4846 4866 ( 21 n); score: 0.667 PGS (1618 1792,2969 2999,3123 3410,3509 3694,3810 3878) SGN-E315100+ PGS (1618 1792,2969 2999,3123 3410,3509 3694,3810 3820) SGN-E328714+ PGS (1618 1792,2969 2999,3123 3410,3509 3690) SGN-E323117+ PGS (1618 1792,2969 2999,3123 3410,3509 3680) SGN-E315175+ PGS (1618 1792,2969 2999,3123 3410,3509 3674) SGN-E314579+ PGS (1618 1792,2969 2999,3123 3277) SGN-E315809+ PGS (1619 1792,2969 2999,3123 3410,3509 3682) SGN-E212612+ PGS (1619 1792,2969 2999,3123 3410,3509 3622) SGN-E322978+ PGS (1619 1792,2969 2999,3123 3410,3509 3573) SGN-E247020+ PGS (1619 1792,2969 2999,3123 3225) SGN-E322777+ PGS (1620 1792,2969 2999,3123 3293) SGN-E259139+ PGS (1622 1792,2969 2999,3123 3410,3509 3681) SGN-E326107+ PGS (1622 1792,2969 2999,3123 3393) SGN-E327026+ PGS (1623 1792,2969 2999,3123 3410,3509 3694,3810 3827) SGN-E339929+ PGS (1623 1792,2969 2999,3123 3410,3509 3694,3810 3826) SGN-E334958+ PGS (1624 1792,2969 2999,3123 3410,3509 3694,3810 3935,4130 4201) SGN-E548943+ PGS (1624 1792,2969 2999,3123 3410,3509 3690) SGN-E543839+ PGS (1624 1792,2969 2999,3123 3410,3509 3572) SGN-E313965+ PGS (1625 1792,2969 2999,3123 3410,3509 3694,3810 3935,4130 4162) SGN-E316989+ PGS (1625 1792,2969 2999,3123 3410,3509 3694,3810 3831) SGN-E321595+ PGS (1625 1792,2969 2999,3123 3410,3509 3694,3810 3825) SGN-E324215+ PGS (1625 1792,2969 2999,3123 3410,3509 3628) SGN-E324863+ PGS (1625 1792,2969 2999,3123 3410,3509 3623) SGN-E262749+ PGS (1625 1792,2969 2999,3123 3410,3509 3617) SGN-E251945+ PGS (1625 1792,2969 2999,3123 3410,3509 3617) SGN-E324214+ PGS (1625 1792,2969 2999,3123 3410,3509 3615) SGN-E311273+ PGS (1625 1792,2969 2999,3123 3410,3509 3609) SGN-E306480+ PGS (1625 1792,2969 2999,3123 3410,3509 3607) SGN-E251470+ PGS (1625 1792,2969 2999,3123 3410,3509 3574) SGN-E316387+ PGS (1625 1792,2969 2999,3123 3410,3509 3573) SGN-E325784+ PGS (1625 1792,2969 2999,3123 3410,3509 3560) SGN-E272630+ PGS (1625 1792,2969 2999,3123 3410,3509 3560) SGN-E313555+ PGS (1625 1792,2969 2999,3123 3410,3509 3518) SGN-E202399+ PGS (1625 1792,2969 2999,3123 3408) SGN-E310497+ PGS (1625 1792,2969 2999,3123 3407) SGN-E336624+ PGS (1625 1792,2969 2999,3123 3407) SGN-E313518+ PGS (1625 1792,2969 2999,3123 3405) SGN-E287922+ PGS (1625 1792,2969 2999,3123 3405) SGN-E311877+ PGS (1625 1792,2969 2999,3123 3359) SGN-E283708+ PGS (1625 1792,2969 2999,3123 3345) SGN-E330586+ PGS (1625 1792,2969 2999,3123 3341) SGN-E300787+ PGS (1625 1792,2969 2999,3123 3229) SGN-E299009+ PGS (1625 1792,2969 2999,3123 3229) SGN-E300128+ PGS (1626 1792,2969 2999,3123 3410,3509 3694,3810 3844) SGN-E333628+ PGS (1626 1792,2969 2999,3123 3410,3509 3694,3810 3825) SGN-E333815+ PGS (1626 1792,2969 2999,3123 3410,3509 3609) SGN-E207905+ PGS (1626 1792,2969 2999,3123 3410,3509 3568) SGN-E324073+ PGS (1627 1792,2969 2999,3123 3410,3509 3694,3810 3876) SGN-E315306+ PGS (1627 1792,2969 2999,3123 3358) SGN-E324437+ PGS (1629 1792,2969 2999,3123 3410,3509 3607) SGN-E320524+ PGS (1631 1792,2969 2999,3123 3410,3509 3623) SGN-E320971+ PGS (1633 1792,2969 2999,3123 3410,3509 3623) SGN-E209751+ PGS (1634 1792,2969 2999,3123 3410,3509 3521) SGN-E267462+ PGS (1634 1792,2969 2999,3123 3410,3509 3518) SGN-E319413+ PGS (1635 1792,2969 2999,3123 3359) SGN-E205230+ PGS (1637 1792,2969 2999,3123 3407) SGN-E281719+ PGS (1638 1792,2969 2999,3123 3274) SGN-E312782+ PGS (1641 1792,2969 2999,3123 3410,3509 3694,3810 3935,4130 4150) SGN-E264187+ PGS (1641 1792,2969 2999,3123 3410,3509 3694,3810 3902) SGN-E262345+ PGS (1641 1792,2969 2999,3123 3410,3509 3566) SGN-E324253+ PGS (1642 1792,2969 2999,3123 3282) SGN-E312303+ PGS (1645 1792,2969 2999,3123 3410,3509 3609) SGN-E307779+ PGS (1648 1792,2969 2999,3123 3410,3509 3649) SGN-E259349+ PGS (1648 1792,2969 2999,3123 3328) SGN-E264660+ PGS (1656 1792,2969 2999,3123 3410,3509 3601) SGN-E329306+ PGS (1708 1792,2969 2999,3123 3410,3509 3519) SGN-E257100+ PGS (1714 1792,2969 2999,3123 3284) SGN-E325504+ PGS (2974 2999,3123 3410,3509 3694,3810 3831) SGN-E321129+ PGS (2982 2999,3123 3410,3509 3694,3810 3935,4130 4161) SGN-E214854+ PGS (3099 3410,3509 3694,3810 3935,4130 4201) SGN-E257121+ PGS (3099 3324) SGN-E263442+ PGS (3127 3410,3509 3690) SGN-E294728+ PGS (3127 3410,3509 3690) SGN-E294729+ PGS (3127 3410,3509 3688) SGN-E311885+ PGS (3201 3410,3509 3532) SGN-E317628+ PGS (3208 3410,3509 3694,3810 3935,4130 4264,4360 4466) SGN-E335066+ PGS (3242 3410,3509 3694,3810 3935,4130 4238) SGN-E324735+ PGS (3273 3410,3509 3694,3810 3935,4130 4264,4360 4450) SGN-E253799+ PGS (3273 3410,3509 3694,3810 3935,4130 4264,4360 4414) SGN-E306540+ PGS (3278 3410,3509 3694,3810 3935,4130 4264,4360 4466) SGN-E211099+ PGS (3334 3410,3509 3694,3810 3935,4130 4264,4360 4479,4605 4657) SGN-E323281+ PGS (3348 3410,3509 3694,3810 3935,4130 4264,4360 4415) SGN-E214809+ PGS (3352 3410,3509 3694,3810 3935,4130 4264,4360 4474) SGN-E320450+ PGS (3378 3410,3509 3694,3810 3935,4130 4264,4360 4459) SGN-E316738+ PGS (3378 3410,3509 3694,3810 3935,4130 4264,4360 4412) SGN-E316587+ PGS (3389 3410,3509 3694,3810 3935,4130 4173) SGN-E200816+ PGS (3395 3410,3509 3694,3810 3935,4130 4174) SGN-E324653+ PGS (3395 3410,3509 3694) SGN-E204202+ PGS (3405 3410,3509 3694,3810 3935,4130 4264,4360 4479,4605 4722) SGN-E262877+ PGS (3405 3410,3509 3694,3810 3935,4130 4264,4360 4479,4605 4666) SGN-E261477+ PGS (3405 3410,3509 3694,3810 3935,4130 4264,4360 4467) SGN-E253672+ PGS (3516 3694,3810 3935,4130 4264,4360 4424) SGN-E203808+ PGS (3523 3694,3810 3935,4130 4234) SGN-E262546+ PGS (3538 3694,3810 3935,4130 4264,4360 4450) SGN-E209252+ PGS (3540 3694,3810 3935,4130 4264,4360 4479,4605 4722) SGN-E215005+ PGS (3553 3694,3810 3935,4130 4264,4360 4467) SGN-E323627+ PGS (3561 3694,3810 3935,4130 4264,4360 4479,4605 4712) SGN-E213242+ PGS (3561 3694,3810 3935,4130 4264,4360 4479,4605 4616) SGN-E206447+ PGS (3653 3694,3810 3935,4130 4264,4360 4479,4605 4722) SGN-E256293+ PGS (3815 3935,4130 4264,4360 4479,4605 4722) SGN-E319042+ PGS (3820 3935,4130 4264,4360 4479,4605 4722) SGN-E269568+ PGS (3827 3935,4130 4264,4360 4479,4605 4657) SGN-E310371+ PGS (3887 3935,4130 4264,4360 4479,4605 4722) SGN-E287726+ PGS (4166 4264,4360 4479,4605 4722) SGN-E267069+ PGS (4182 4264,4360 4479,4605 4722) SGN-E208077+ PGS (4222 4264,4360 4479,4605 4722) SGN-E326919+ PGS (4229 4264,4360 4479,4605 4722) SGN-E250966+ PGS (4231 4264,4360 4479,4605 4722) SGN-E264284+ PGS (4235 4264,4360 4479,4605 4722) SGN-E211166+ PGS (4244 4264,4360 4479,4605 4722) SGN-E543832- PGS (4245 4264,4360 4479,4605 4722) SGN-E273841+ PGS (4245 4264,4360 4479,4605 4722) SGN-E273849+ PGS (4249 4264,4360 4479,4605 4722) SGN-E247634+ PGS (4394 4479,4605 4722) SGN-E253878+ PGS (4399 4479,4605 4722) SGN-E552339+ PGS (4408 4479,4605 4722) SGN-E244435+ PGS (4417 4479,4605 4722) SGN-E553391+ PGS (4418 4479,4605 4722) SGN-E344174+ PGS (4419 4479,4605 4722) SGN-E551806+ PGS (4419 4479,4605 4722) SGN-E556457+ PGS (4435 4479,4605 4722) SGN-E279446+ PGS (4635 4722) SGN-E246249- PGS (4666 4722,4846 4866) SGN-E548944- 3-phase translation of AGS-1 (+strand): . . . . . . 1618 TTCAGACAAAAATGGCAAAGAGTGGCATTTTGGTAATTGTTTCAGCTCTTGTTGTTCTTG F R Q K W Q R V A F W - L F Q L L L F L S D K N G K E W H F G N C F S S C C S C Q T K M A K S G I L V I V S A L V V L . . . . . . 1678 CAGTTTGTGGTGTTTTTGCTGAGGAGAACGAATATGTGTTGACTTTGGACCATTCTAACC Q F V V F L L R R T N M C - L W T I L T S L W C F C - G E R I C V D F G P F - P A V C G V F A E E N E Y V L T L D H S N . . . . . . : 1738 TCACTGAGACTGTTGCTAAGCACAACTTCATTGTTGTTGAATTCTATGCACCTTG : GTGTG S L R L L L S T T S L L L N S M H L : G V H - D C C - A Q L H C C - I L C T L : V W L T E T V A K H N F I V V E F Y A P W : C . . . : . . . 2974 GACACTGTAAGAGTCTTGCTCCTGAG : TATGAAAAAGCTGCCTCAGAGCTGAGTAGTCATG D T V R V L L L S : M K K L P Q S - V V M T L - E S C S - : V - K S C L R A E - S - G H C K S L A P E : Y E K A A S E L S S H . . . . . . 3157 ACCCTCCAATTGTTCTAGCTAAGTATGATGCAAATGATGAAGCCAATAGAGAACTTTCAA T L Q L F - L S M M Q M M K P I E N F Q P S N C S S - V - C K - - S Q - R T F K D P P I V L A K Y D A N D E A N R E L S . . . . . . 3217 AACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATATTGAGAGATGGAGGAAAGAAAG N S T R S R V S Q L L R Y - E M E E R K T V R D P G F P N Y - D I E R W R K E S K Q Y E I Q G F P T I K I L R D G G K K . . . . . . 3277 TTCAAGACTATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTACTTGAAGAAACAAG F K T I T V L V K Q L V L Y P T - R N K S R L - R S S - S S W Y C I L L E E T S V Q D Y N G P R E A A G I V S Y L K K Q . . . . . . 3337 TGGGTCCTGCATCTGCTGAAATCAAGTCGAAGGAAGATGCCACAAACCTTATTGATGAGA W V L H L L K S S R R K M P Q T L L M R G S C I C - N Q V E G R C H K P Y - - E V G P A S A E I K S K E D A T N L I D E . . : . . . . 3397 AAAGTATCTTTGTT : GTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTATT K V S L L : L V Y F Q T P P E R N S R T I K Y L C : C W Y I S R P L R R E I R E L F K S I F V : V G I F P D P S G E K F E N Y . . . . . . 3555 TAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGCTAAAC - R - L K N C E A S S I L L T L L M L N N A S - K T A R R V R F C S H C - C - T L T L A E K L R G E F D F A H T V D A K . . . . . . 3615 ACCTCCCTCGGGGTGGACCAGTCAACAAGCCCACTCTTCGTCTTCTAAAGCCATTTGATG T S L G V D Q S T S P L F V F - S H L M P P S G W T S Q Q A H S S S S K A I - - H L P R G G P V N K P T L R L L K P F D . . : . . . . 3675 AACTCTTTGTTGATTTTGAG : GACTTTGATGTCGATGCAATGGAGAAGTTCATCTCAGAAT N S L L I L R : T L M S M Q W R S S S Q N T L C - F - : G L - C R C N G E V H L R I E L F V D F E : D F D V D A M E K F I S E . . . . . . 3850 CTAGTATTCCTGTTGTTACTATTTTTGACAATGACCCAAACAACCATCCTTATGTTAACA L V F L L L L F L T M T Q T T I L M L T - Y S C C Y Y F - Q - P K Q P S L C - Q S S I P V V T I F D N D P N N H P Y V N . . . : . . . 3910 AGTTCTTCGAAGGCACCAACGCCAAG : GCATTGCTATTTGTGAACTTTAGCTCTGAATTTG S S S K A P T P R : H C Y L - T L A L N L V L R R H Q R Q : G I A I C E L - L - I - K F F E G T N A K : A L L F V N F S S E F . . . . . . 4164 ATGCTTTTAAGTCCAAGTACAACGATGTTGCTGTGATTTACAAAGGGGATGGGGTGAGCT M L L S P S T T M L L - F T K G M G - A C F - V Q V Q R C C C D L Q R G W G E L D A F K S K Y N D V A V I Y K G D G V S . . . . . : . 4224 TTCTCTTGGGTGATGTTGAGGCTGGTCAAGGTGCTTTTGAG : TACTTCGGACTGAAGCCGG F S W V M L R L V K V L L S : T S D - S R S L G - C - G W S R C F - : V L R T E A G F L L G D V E A G Q G A F E : Y F G L K P . . . . . . 4379 AACAGGCACCTGTGATCATCATAATGGACGCTGATGAACAAAAGTATATTAAGGACCATG N R H L - S S - W T L M N K S I L R T M T G T C D H H N G R - - T K V Y - G P C E Q A P V I I I M D A D E Q K Y I K D H . . . . . : . 4439 TGGAACCTGATGCCATTGCTGCTTACTTGAAGGATTACAAG : GAAGGAAAACTGAAGCCAC W N L M P L L L T - R I T R : K E N - S H G T - C H C C L L E G L Q : G R K T E A T V E P D A I A A Y L K D Y K : E G K L K P . . . . . . 4624 ATGTGAAGTCAGAGCCCATCCCTGAAGTCAATGACGAACCTGTTAAGGTGGTTGTTAGGG M - S Q S P S L K S M T N L L R W L L G C E V R A H P - S Q - R T C - G G C - G H V K S E P I P E V N D E P V K V V V R . . . . : . . 4684 ATACCCTCCAGGATATGGTTTACAAATCGGGAAAAAATG : GTCGTGATGAGGAGTTGGATG I P S R I W F T N R E K M : V V M R S W M Y P P G Y G L Q I G K K W : S - - G V G D T L Q D M V Y K S G K N : G R D E E L D Maximal non-overlapping open reading frames (>= 64 codons): >C06HBa0054K13.1-11+_PGL-1_AGS-1_PPS_1 (1620 1792,2969 2999,3123 3410,3509 3694,3810 3935,4130 4264,4360 4479,4605 4722,4846 4865) (frame '0'; 1197 bp, 399 residues) 1 QTKMAKSGIL VIVSALVVLA VCGVFAEENE YVLTLDHSNL TETVAKHNFI VVEFYAPWCG 61 HCKSLAPEYE KAASELSSHD PPIVLAKYDA NDEANRELSK QYEIQGFPTI KILRDGGKKV 121 QDYNGPREAA GIVSYLKKQV GPASAEIKSK EDATNLIDEK SIFVVGIFPD PSGEKFENYL 181 TLAEKLRGEF DFAHTVDAKH LPRGGPVNKP TLRLLKPFDE LFVDFEDFDV DAMEKFISES 241 SIPVVTIFDN DPNNHPYVNK FFEGTNAKAL LFVNFSSEFD AFKSKYNDVA VIYKGDGVSF 301 LLGDVEAGQG AFEYFGLKPE QAPVIIIMDA DEQKYIKDHV EPDAIAAYLK DYKEGKLKPH 361 VKSEPIPEVN DEPVKVVVRD TLQDMVYKSG KNGRDEELD AGS-2 (3096 3410,3509 3694,3810 3917) SCR (e 1.000 d 0.907 a 0.997,e 1.000 d 0.988 a 0.999,e 1.000) Exon 1 3096 3410 ( 315 n); score: 1.000 Intron 1 3411 3508 ( 98 n); Pd: 0.907 Pa: 0.997 Exon 2 3509 3694 ( 186 n); score: 1.000 Intron 2 3695 3809 ( 115 n); Pd: 0.988 Pa: 0.999 Exon 3 3810 3917 ( 108 n); score: 1.000 PGS (3096 3410,3509 3694,3810 3917) SGN-E259308+ PGS (3096 3410,3509 3694,3810 3818) SGN-E253683+ 3-phase translation of AGS-2 (+strand): . . . . . . 3096 TTAATGTTAAATTATGTTTCTTTCCAGTATGAAAAAGCTGCCTCAGAGCTGAGTAGTCAT L M L N Y V S F Q Y E K A A S E L S S H - C - I M F L S S M K K L P Q S - V V M N V K L C F F P V - K S C L R A E - S . . . . . . 3156 GACCCTCCAATTGTTCTAGCTAAGTATGATGCAAATGATGAAGCCAATAGAGAACTTTCA D P P I V L A K Y D A N D E A N R E L S T L Q L F - L S M M Q M M K P I E N F Q - P S N C S S - V - C K - - S Q - R T F . . . . . . 3216 AAACAGTACGAGATCCAGGGTTTCCCAACTATTAAGATATTGAGAGATGGAGGAAAGAAA K Q Y E I Q G F P T I K I L R D G G K K N S T R S R V S Q L L R Y - E M E E R K K T V R D P G F P N Y - D I E R W R K E . . . . . . 3276 GTTCAAGACTATAACGGTCCTCGTGAAGCAGCTGGTATTGTATCCTACTTGAAGAAACAA V Q D Y N G P R E A A G I V S Y L K K Q F K T I T V L V K Q L V L Y P T - R N K S S R L - R S S - S S W Y C I L L E E T . . . . . . 3336 GTGGGTCCTGCATCTGCTGAAATCAAGTCGAAGGAAGATGCCACAAACCTTATTGATGAG V G P A S A E I K S K E D A T N L I D E W V L H L L K S S R R K M P Q T L L M R S G S C I C - N Q V E G R C H K P Y - - . . : . . . . 3396 AAAAGTATCTTTGTT : GTTGGTATATTTCCAGACCCCTCCGGAGAGAAATTCGAGAACTAT K S I F V : V G I F P D P S G E K F E N Y K V S L L : L V Y F Q T P P E R N S R T I E K Y L C : C W Y I S R P L R R E I R E L . . . . . . 3554 TTAACGCTAGCTGAAAAACTGCGAGGCGAGTTCGATTTTGCTCACACTGTTGATGCTAAA L T L A E K L R G E F D F A H T V D A K - R - L K N C E A S S I L L T L L M L N F N A S - K T A R R V R F C S H C - C - . . . . . . 3614 CACCTCCCTCGGGGTGGACCAGTCAACAAGCCCACTCTTCGTCTTCTAAAGCCATTTGAT H L P R G G P V N K P T L R L L K P F D T S L G V D Q S T S P L F V F - S H L M T P P S G W T S Q Q A H S S S S K A I - . . . : . . . 3674 GAACTCTTTGTTGATTTTGAG : GACTTTGATGTCGATGCAATGGAGAAGTTCATCTCAGAA E L F V D F E : D F D V D A M E K F I S E N S L L I L R : T L M S M Q W R S S S Q N - T L C - F - : G L - C R C N G E V H L R . . . . . . 3849 TCTAGTATTCCTGTTGTTACTATTTTTGACAATGACCCAAACAACCATCCTTATGTTAAC S S I P V V T I F D N D P N N H P Y V N L V F L L L L F L T M T Q T T I L M L T I - Y S C C Y Y F - Q - P K Q P S L C - . 3909 AAGTTCTTC K F F S S Q V L Maximal non-overlapping open reading frames (>= 64 codons): >C06HBa0054K13.1-11+_PGL-1_AGS-2_PPS_1 (3096 3410,3509 3694,3810 3917) (frame '1'; 609 bp, 203 residues) 1 LMLNYVSFQY EKAASELSSH DPPIVLAKYD ANDEANRELS KQYEIQGFPT IKILRDGGKK 61 VQDYNGPREA AGIVSYLKKQ VGPASAEIKS KEDATNLIDE KSIFVVGIFP DPSGEKFENY 121 LTLAEKLRGE FDFAHTVDAK HLPRGGPVNK PTLRLLKPFD ELFVDFEDFD VDAMEKFISE 181 SSIPVVTIFD NDPNNHPYVN KFF AGS-3 (4347 4982) SCR (e 0.998) Exon 1 4347 4982 ( 636 n); score: 0.998 PGS (4347 4982) SGN-E539993+ PGS (4348 4842) SGN-E288667+ 3-phase translation of AGS-3 (+strand): . . . . . . 4347 TTTGGAATTGCAGTACTTCGGACTGAAGCCGGAACAGGCACCTGTGATCATCATAATGGA F G I A V L R T E A G T G T C D H H N G L E L Q Y F G L K P E Q A P V I I I M D W N C S T S D - S R N R H L - S S - W . . . . . . 4407 CGCTGATGAACAAAAGTATATTAAGGACCATGTGGAACCTGATGCCATTGCTGCTTACTT R - - T K V Y - G P C G T - C H C C L L A D E Q K Y I K D H V E P D A I A A Y L T L M N K S I L R T M W N L M P L L L T . . . . . . 4467 GAAGGATTACAAGGTGATGCATCCTCTTCTTTTTCTTGGATATATTTTGGAATGAAAGCG E G L Q G D A S S S F S W I Y F G M K A K D Y K V M H P L L F L G Y I L E - K R - R I T R - C I L F F F L D I F W N E S . . . . . . 4527 TTGTTAATTGTGAACAATATTCTGCACGGAAGGAAAGGCTTACTAACCTTTTTCCTCTAA L L I V N N I L H G R K G L L T F F L - C - L - T I F C T E G K A Y - P F S S N V V N C E Q Y S A R K E R L T N L F P L . . . . . . 4587 TTTTCCACATTGTTACAGGAAGGAAAACTGAAGCCACATGTGAAGTCAGAGCCCATCCCT F S T L L Q E G K L K P H V K S E P I P F P H C Y R K E N - S H M - S Q S P S L I F H I V T G R K T E A T C E V R A H P . . . . . . 4647 GAAGTCAATGACGAACCTGTTAAGGTGGTTGTTAGGGATACCCTCCAGGATATGGTTTAC E V N D E P V K V V V R D T L Q D M V Y K S M T N L L R W L L G I P S R I W F T - S Q - R T C - G G C - G Y P P G Y G L . . . . . . 4707 AAATCGGGAAAAAATGGTGCGTGTCTGTCAATATTTTAATCTTTATTCGATGTCTTGGTT K S G K N G A C L S I F - S L F D V L V N R E K M V R V C Q Y F N L Y S M S W L Q I G K K W C V S V N I L I F I R C L G . . . . . . 4767 AAGAAAGAGTTGTTTCTTTGTTGTACCATTTCGTTCTCCCTCTTTGGTGTTTACTTGCAT K K E L F L C C T I S F S L F G V Y L H R K S C F F V V P F R S P S L V F T C I - E R V V S L L Y H F V L P L W C L L A . . . . . . 4827 TTCTTTACTAGTGTGTAAGGTCGTGATGAGGAGTTGGATGTCGTAAATTAACTGATTGTG F F T S V - G R D E E L D V V N - L I V S L L V C K V V M R S W M S - I N - L W F L Y - C V R S - - G V G C R K L T D C . . . . . . 4887 GAACTATTATACGTAGTAGGAGAAAGAGGGAGCAGTCATCAGCTAATTGCCCGCGGGTTT E L L Y V V G E R G S S H Q L I A R G F N Y Y T - - E K E G A V I S - L P A G L G T I I R S R R K R E Q S S A N C P R V . . . . 4947 GACTTTAACAATAGTTGTGCTCTCCTAAATTATTAT D F N N S C A L L N Y Y T L T I V V L S - I I - L - Q - L C S P K L L Maximal non-overlapping open reading frames (>= 64 codons): >C06HBa0054K13.1-11+_PGL-1_AGS-3_PPS_1 (4630 4872) (frame '2'; 240 bp, 80 residues) 1 SQSPSLKSMT NLLRWLLGIP SRIWFTNREK MVRVCQYFNL YSMSWLRKSC FFVVPFRSPS 61 LVFTCISLLV CKVVMRSWMS - 3-phase translation of AGS-3 (-strand): . . . . . . 4982 ATAATAATTTAGGAGAGCACAACTATTGTTAAAGTCAAACCCGCGGGCAATTAGCTGATG I I I - E S T T I V K V K P A G N - L M - - F R R A Q L L L K S N P R A I S - - N N L G E H N Y C - S Q T R G Q L A D . . . . . . 4922 ACTGCTCCCTCTTTCTCCTACTACGTATAATAGTTCCACAATCAGTTAATTTACGACATC T A P S F S Y Y V - - F H N Q L I Y D I L L P L S P T T Y N S S T I S - F T T S D C S L F L L L R I I V P Q S V N L R H . . . . . . 4862 CAACTCCTCATCACGACCTTACACACTAGTAAAGAAATGCAAGTAAACACCAAAGAGGGA Q L L I T T L H T S K E M Q V N T K E G N S S S R P Y T L V K K C K - T P K R E P T P H H D L T H - - R N A S K H Q R G . . . . . . 4802 GAACGAAATGGTACAACAAAGAAACAACTCTTTCTTAACCAAGACATCGAATAAAGATTA E R N G T T K K Q L F L N Q D I E - R L N E M V Q Q R N N S F L T K T S N K D - R T K W Y N K E T T L S - P R H R I K I . . . . . . 4742 AAATATTGACAGACACGCACCATTTTTTCCCGATTTGTAAACCATATCCTGGAGGGTATC K Y - Q T R T I F S R F V N H I L E G I N I D R H A P F F P D L - T I S W R V S K I L T D T H H F F P I C K P Y P G G Y . . . . . . 4682 CCTAACAACCACCTTAACAGGTTCGTCATTGACTTCAGGGATGGGCTCTGACTTCACATG P N N H L N R F V I D F R D G L - L H M L T T T L T G S S L T S G M G S D F T C P - Q P P - Q V R H - L Q G W A L T S H . . . . . . 4622 TGGCTTCAGTTTTCCTTCCTGTAACAATGTGGAAAATTAGAGGAAAAAGGTTAGTAAGCC W L Q F S F L - Q C G K L E E K G - - A G F S F P S C N N V E N - R K K V S K P V A S V F L P V T M W K I R G K R L V S . . . . . . 4562 TTTCCTTCCGTGCAGAATATTGTTCACAATTAACAACGCTTTCATTCCAAAATATATCCA F P S V Q N I V H N - Q R F H S K I Y P F L P C R I L F T I N N A F I P K Y I Q L S F R A E Y C S Q L T T L S F Q N I S . . . . . . 4502 AGAAAAAGAAGAGGATGCATCACCTTGTAATCCTTCAAGTAAGCAGCAATGGCATCAGGT R K R R G C I T L - S F K - A A M A S G E K E E D A S P C N P S S K Q Q W H Q V K K K K R M H H L V I L Q V S S N G I R . . . . . . 4442 TCCACATGGTCCTTAATATACTTTTGTTCATCAGCGTCCATTATGATGATCACAGGTGCC S T W S L I Y F C S S A S I M M I T G A P H G P - Y T F V H Q R P L - - S Q V P F H M V L N I L L F I S V H Y D D H R C . . . . 4382 TGTTCCGGCTTCAGTCCGAAGTACTGCAATTCCAAA C S G F S P K Y C N S K V P A S V R S T A I P L F R L Q S E V L Q F Q Maximal non-overlapping open reading frames (>= 64 codons): >C06HBa0054K13.1-11-_PGL-1_AGS-3_PPS_1 (4650 4348) (frame '0'; 303 bp, 101 residues) 1 LQGWALTSHV ASVFLPVTMW KIRGKRLVSL SFRAEYCSQL TTLSFQNISK KKKRMHHLVI 61 LQVSSNGIRF HMVLNILLFI SVHYDDHRCL FRLQSEVLQF Q ... finished at: Mon Aug 28 22:12:06 2006 ________________________________________________________________________________ Sequence 12: C06HBa0054K13.1-12, from 1 to 43325, both strands analyzed. ... started at: Mon Aug 28 22:12:06 2006 EST library file: /tmp/cxgn-bacpublish-resources-LF1h7Z/sgn_ests; matching gDNA +strand ... ... found all matches, elapsed seconds = 4 ... matches indexed, elapsed seconds = 4 HitsTableSize = 5 EST library file: /tmp/cxgn-bacpublish-resources-LF1h7Z/sgn_ests; matching gDNA -strand ... ... found all matches, elapsed seconds = 4 ... matches indexed, elapsed seconds = 4 HitsTableSize = 19 ******************************************************************************** EST sequence 2 +strand 663 n (File: SGN-E391539+) 1 TTTTTTTTTT TTTTTTTTTT TTTTTTTTTT CCAAAAAAAA AAAAAATATT AAAAAATATA 61 TCATTTCAAA GTGTGTGTTT ATATGTTTCA TATAGTGGCT ATTTATACCC ATACATTAAT 121 GCATACAAGG TCATTAGTGA TGTCATATTC CACATGACAC TACAATTATT TTACACTACA 181 ATTATTTTAC AACACTCCCC CTTGGATATC TATGTAAAAA AAAGTACATA AATATACATA 241 ATACCCTTTA TTTGCTGCCT CATTAAAAAC CTTACCAGAA AAACCCAACT TGGGACAAAA 301 CCATATTTAA GGAAAAAAGT ACAACGCGTA TTTCACTCCC CCTGATGAAA ACTTTACTTG 361 ATATCTTGGA AACGGCGCAT TCCAATCTTG TATCTCAACT TCTCAAACGT TGATGTTGGC 421 AATGCCTTTG TGAATAAATC ACCAAAATTA TCACTTGAAC GAATTTGTTG AACTTCTATC 481 TCACCATTTT GTTGAAAATC ATGCGTGAAA AAAAACTTTG GTGAAATATG CTTTGTCCGG 541 TCTCCTTTGA TGTATCCTCC TTTCAATTGA GCTATACATG CAGCATTATC TTCGTACATT 601 GTGGTTGGAA TATTCTTTTT CAAAGAAAAA CCACACATTT CCTGAATATG ATGGGTCATT 661 AAT Predicted gene structure (within gDNA segment 11462 to 15872): Exon 1 12896 12904 ( 9 n); cDNA 156 164 ( 9 n); score: 0.667 Intron 1 12905 14678 (1774 n); Pd: 0.069 (s: 0), Pa: 0.376 (s: 0.76) Exon 2 14679 14729 ( 51 n); cDNA 165 215 ( 51 n); score: 0.745 Intron 2 14730 14788 ( 59 n); Pd: 0.000 (s: 0.74), Pa: 0.000 (s: 0.72) Exon 3 14789 15235 ( 447 n); cDNA 216 663 ( 448 n); score: 0.925 PPA cDNA 30 1 MATCH C06HBa0054K13.1-12+ SGN-E391539+ 0.907 507 0.765 C PGS_C06HBa0054K13.1-12+_SGN-E391539+ (12896 12904,14679 14729,14789 15235) Alignment (genomic DNA sequence = upper lines): GATAATATAG TAAAAGAAAA ATACTCAAAT ACATTGAAAT TTAAGAAAAA TATCATCTAC 12955 || | || | GACACTACA. .......... .......... .......... .......... .......... 164 ATCGTTCGTA AAAAACTTGG TTCATCGATA TCATTTTCAT TAGAGAAAAA ATTCATCTAT 13015 .......... .......... .......... .......... .......... .......... 164 TCCGTTATTT GTTAAATGAA AAAGGTTTCA ATTTCGCAAA ATCATTTTTT ATCTGTGGAC 13075 .......... .......... .......... .......... .......... .......... 164 AATTATAATT TGACATTGCT ATTAAGTAAA TCATTTTTTT ATAAAAAAAA ATGTCCAAAT 13135 .......... .......... .......... .......... .......... .......... 164 ATGATATCAA ACTTTGAAAA ATAACTCATT TATGTCATCT GCTTAAAGTA TGGTTAATCT 13195 .......... .......... .......... .......... .......... .......... 164 ATATAATTTC AATTAACAAA CAATGGCATG GATAAGTCTT TACTTAAACA GATATGATAT 13255 .......... .......... .......... .......... .......... .......... 164 AAATAATGTA TAATATAAAA AGTATTCTTT TAACGCTGGA TAACCTATTT AAGCAGTTTT 13315 .......... .......... .......... .......... .......... .......... 164 TCAATAATAA AATAATATAA CAATTATTAT TTTCTTAATA AATACGTCAA ATTTAGATAT 13375 .......... .......... .......... .......... .......... .......... 164 AACTAAAAGT ACACTAAAAA AGTAGTAACT AATTTAACTG CGACCGACTC CCAAATAATT 13435 .......... .......... .......... .......... .......... .......... 164 GTGACAACTG TTCCTTTTTG CAGATAGGAT AATTTATTAT TTTGTTTTAA ATTTCTTAAC 13495 .......... .......... .......... .......... .......... .......... 164 CTACTGGAAT ACTACTATTA ACTCAAAACT GCTATTTGCA TCATTGCCAT AAATGAGGAA 13555 .......... .......... .......... .......... .......... .......... 164 TTTATGACGT GCAGGCAACC GTTAAATGAC CACAATTATG GGACTAAAAT ATGAAAATAA 13615 .......... .......... .......... .......... .......... .......... 164 ATATTACCTT TTAAAAAGGA TGATTTAATT TAATTTAAAA TGGAGTTTAA AAAATGAGAG 13675 .......... .......... .......... .......... .......... .......... 164 AATTTTTTTT AATTTTGTGG TTCAAAAGTA AAATTATATC AAATGTATCA AAATGTCCTT 13735 .......... .......... .......... .......... .......... .......... 164 CAATTTTGTG GTCTTAAACA TGTCACGTGA AAAGTTAAAG TGTTGCCAAA TAAAAAAAGA 13795 .......... .......... .......... .......... .......... .......... 164 GGTCATTATT TTTGAAACAA AATAAAAAGA AAATAAAGAC ATTTTTTTTT AAAACGGAGG 13855 .......... .......... .......... .......... .......... .......... 164 GATTATAAAA AAATCAATAT GATCCTTTTT TCTCCCAAAC AGAGGCATTC AATGTTTATA 13915 .......... .......... .......... .......... .......... .......... 164 TTAAATTAAT TTAATTTCGG GAAAATATAT AAGTACCTTC TTGACAATGA TCAAAATCTC 13975 .......... .......... .......... .......... .......... .......... 164 AGAAACACAT CTTAACTAAA CTAAGATCCT ACTACCTCTG ATTTTTTTTT TTTTTGTAAT 14035 .......... .......... .......... .......... .......... .......... 164 TTATGCACCT TTTTGGCTTA CGTGACATCC AAATATTTTC TAGCGCCTCA ATTGCGTGGG 14095 .......... .......... .......... .......... .......... .......... 164 GTCACGAAGA GTGTCATGTA AGACAAAAGA TGTATATTAT TACAAAAATA GAAGTTCAGG 14155 .......... .......... .......... .......... .......... .......... 164 GGTAATAAAA TCTTACTTTA ATTAAGGTGT CTTTCTGAAA TTCGGTCATA ATCTAGGTGG 14215 .......... .......... .......... .......... .......... .......... 164 TACTTGTGCT TTTTCCCTTT AATTTCTATT ACAATGTAAT TTAAGGAAGT AAAATTTATG 14275 .......... .......... .......... .......... .......... .......... 164 TTATAAAATT TAAACATATG ACAAATATGT ATTGAATTGA TATAAATATT TTGTGTGAAT 14335 .......... .......... .......... .......... .......... .......... 164 AAATTTTATC CCAGATAAAA CTAAGTCATT AATATTCCTT TAAATTCTAA AAGTTCATAT 14395 .......... .......... .......... .......... .......... .......... 164 TACTTTACTC AATGGAAAAA TAAATAAATA TATTTTTGTT GCAAAGAAAG CTCAGAATAT 14455 .......... .......... .......... .......... .......... .......... 164 AAGATGAAAA AGACAAAAAG TATAAGATAG AGGAGATAAT TTTCTTATTC AAGTATATCA 14515 .......... .......... .......... .......... .......... .......... 164 TACAATGGTG AATGATATCT CTATTTATAG TGTTGAGATA TCATATTCAA AGGTCACCTT 14575 .......... .......... .......... .......... .......... .......... 164 GAAATTTTAC ATAGTTATCA TCAAGGTTCA TATCACCTTG ATATCTTATC ACATTGGAAA 14635 .......... .......... .......... .......... .......... .......... 164 CACTAATACA TGAATTCAAT TAATTGTTGG ATAACTCTAA TAGATCATCC AGATATACAA 14695 || || ||||| .......... .......... .......... .......... ...ATTATTT TACACTACAA 181 TGAATTTACA ACACTCCCCC TTGGATATCC ATAGATTATG TGCCTCATTA AAACCTTACT 14755 | | |||||| |||||||||| ||||||||| || TTATTTTACA ACACTCCCCC TTGGATATCT ATGT...... .......... .......... 215 AGGAAAAACC CAGTGGGAAA AAGTCTAGTG AAGGAAAAAG AGTACACATA TCT-CATAAT 14814 ||||| |||||| | | | | |||||| .......... .......... .......... ...AAAAAAA AGTACATAAA TATACATAAT 242 ACGCTTTGAA TGTTGCCTCG TTAAAAACCT TACCATGAAA ACCCAACTTG GGACAAAACC 14874 || |||| || |||||| |||||||||| ||||| ||| |||||||||| |||||||||| ACCCTTTATT TGCTGCCTCA TTAAAAACCT TACCAGAAAA ACCCAACTTG GGACAAAACC 302 ATAGTTAAGG AAAAGAGTAC AACGCGTATT TCGCTCCCCC TGATGAAAAC TTTACTTGAT 14934 ||| |||||| |||| ||||| |||||||||| || ||||||| |||||||||| |||||||||| ATATTTAAGG AAAAAAGTAC AACGCGTATT TCACTCCCCC TGATGAAAAC TTTACTTGAT 362 ATCTCGGAGA CGGCGCATTC CAATCTTGTA TCTCAACTTC TCAAATGTTG ATGTTGGCAA 14994 |||| ||| | |||||||||| |||||||||| |||||||||| ||||| |||| |||||||||| ATCTTGGAAA CGGCGCATTC CAATCTTGTA TCTCAACTTC TCAAACGTTG ATGTTGGCAA 422 TGCCTTAGTG AATAAATCAG CAAGATTATC ACCTGAACGA ATTTGTTGAA CTTCTATCTC 15054 |||||| ||| ||||||||| ||| |||||| || ||||||| |||||||||| |||||||||| TGCCTTTGTG AATAAATCAC CAAAATTATC ACTTGAACGA ATTTGTTGAA CTTCTATCTC 482 ACCATTTTGT TGAAGATCAT ACGTGAAAAA GAACTTTGGT GAGATATGCT TTGTCCGGTC 15114 |||||||||| |||| ||||| ||||||||| ||||||||| || ||||||| |||||||||| ACCATTTTGT TGAAAATCAT GCGTGAAAAA AAACTTTGGT GAAATATGCT TTGTCCGGTC 542 TCCTTTGATG TATCCTCCTT TCAATTGAAC TATACATGCA GCATTATCTT CGTACATTGT 15174 |||||||||| |||||||||| |||||||| | |||||||||| |||||||||| |||||||||| TCCTTTGATG TATCCTCCTT TCAATTGAGC TATACATGCA GCATTATCTT CGTACATTGT 602 GGTTGGTATA TTCTTTTTCA AAGAAAAACC ACACATTTTC TGAATATGAT GGGTCATTGA 15234 |||||| ||| |||||||||| |||||||||| |||||||| | |||||||||| |||||||| | GGTTGGAATA TTCTTTTTCA AAGAAAAACC ACACATTTCC TGAATATGAT GGGTCATTAA 662 T 15235 | T 663 hqPGS_C06HBa0054K13.1-12+_SGN-E391539+ (14679 14729,14789 15235) ******************************************************************************** EST sequence 21 -strand 570 n (File: SGN-E349274-) 1 GTGTGTTTAT ATGTTTCATA TAGTGGCTAT TTATAGCCAT ACATTAATGC ATACAAGGTC 61 ATTAGTGATG TCATATTCCA CATGACACTA CAATTATTTT ACACTACAAT TATTTTACAA 121 CACTCCCCCT TGGATATCTA TGTAAAAGAA AGTACATAGA TATACATAAT ACGCTTTATT 181 TGCTGCCTCA TTAAAAACCT TACCAGGAAA ACCCAACTTG GGACAAAACC ATAGTTAAGG 241 AAAAGAGTAC AACGCGTATT TCACTCCCCC TGATGAAAAC TTTACTTGAT ATCTTGGAGA 301 CGGCGCATTC CAATCTTGTA TCTCAACTTC TCAAACGTTG ATGTTGGCAA TGCCTTTGTG 361 AATAAATCAG CAAGATTATC ACTTGAACGA ATTTGTTGAA CTTCTATCTC ACCATTTTGT 421 TGAAGATCAT GCGTGAAAAA GAACTTTGGT GAGATATGCT TTGTCCGGTC TCCTTTGATG 481 TATCCTCCTT TCAATTGAGC TATACATGCA GCATTATCTT CGTACATTGT GGTTGGTATA 541 TTCTTTTTCA AAGAAAAACC ACACATTTCC Predicted gene structure (within gDNA segment 12181 to 15832): Exon 1 12896 12904 ( 9 n); cDNA 84 92 ( 9 n); score: 0.667 Intron 1 12905 14678 (1774 n); Pd: 0.069 (s: 0), Pa: 0.376 (s: 0.76) Exon 2 14679 14729 ( 51 n); cDNA 93 143 ( 51 n); score: 0.745 Intron 2 14730 14788 ( 59 n); Pd: 0.000 (s: 0.74), Pa: 0.000 (s: 0.72) Exon 3 14789 15212 ( 424 n); cDNA 144 568 ( 425 n); score: 0.949 MATCH C06HBa0054K13.1-12+ SGN-E349274- 0.927 484 0.849 C PGS_C06HBa0054K13.1-12+_SGN-E349274- (12896 12904,14679 14729,14789 15212) Alignment (genomic DNA sequence = upper lines): GATAATATAG TAAAAGAAAA ATACTCAAAT ACATTGAAAT TTAAGAAAAA TATCATCTAC 12955 || | || | GACACTACA. .......... .......... .......... .......... .......... 92 ATCGTTCGTA AAAAACTTGG TTCATCGATA TCATTTTCAT TAGAGAAAAA ATTCATCTAT 13015 .......... .......... .......... .......... .......... .......... 92 TCCGTTATTT GTTAAATGAA AAAGGTTTCA ATTTCGCAAA ATCATTTTTT ATCTGTGGAC 13075 .......... .......... .......... .......... .......... .......... 92 AATTATAATT TGACATTGCT ATTAAGTAAA TCATTTTTTT ATAAAAAAAA ATGTCCAAAT 13135 .......... .......... .......... .......... .......... .......... 92 ATGATATCAA ACTTTGAAAA ATAACTCATT TATGTCATCT GCTTAAAGTA TGGTTAATCT 13195 .......... .......... .......... .......... .......... .......... 92 ATATAATTTC AATTAACAAA CAATGGCATG GATAAGTCTT TACTTAAACA GATATGATAT 13255 .......... .......... .......... .......... .......... .......... 92 AAATAATGTA TAATATAAAA AGTATTCTTT TAACGCTGGA TAACCTATTT AAGCAGTTTT 13315 .......... .......... .......... .......... .......... .......... 92 TCAATAATAA AATAATATAA CAATTATTAT TTTCTTAATA AATACGTCAA ATTTAGATAT 13375 .......... .......... .......... .......... .......... .......... 92 AACTAAAAGT ACACTAAAAA AGTAGTAACT AATTTAACTG CGACCGACTC CCAAATAATT 13435 .......... .......... .......... .......... .......... .......... 92 GTGACAACTG TTCCTTTTTG CAGATAGGAT AATTTATTAT TTTGTTTTAA ATTTCTTAAC 13495 .......... .......... .......... .......... .......... .......... 92 CTACTGGAAT ACTACTATTA ACTCAAAACT GCTATTTGCA TCATTGCCAT AAATGAGGAA 13555 .......... .......... .......... .......... .......... .......... 92 TTTATGACGT GCAGGCAACC GTTAAATGAC CACAATTATG GGACTAAAAT ATGAAAATAA 13615 .......... .......... .......... .......... .......... .......... 92 ATATTACCTT TTAAAAAGGA TGATTTAATT TAATTTAAAA TGGAGTTTAA AAAATGAGAG 13675 .......... .......... .......... .......... .......... .......... 92 AATTTTTTTT AATTTTGTGG TTCAAAAGTA AAATTATATC AAATGTATCA AAATGTCCTT 13735 .......... .......... .......... .......... .......... .......... 92 CAATTTTGTG GTCTTAAACA TGTCACGTGA AAAGTTAAAG TGTTGCCAAA TAAAAAAAGA 13795 .......... .......... .......... .......... .......... .......... 92 GGTCATTATT TTTGAAACAA AATAAAAAGA AAATAAAGAC ATTTTTTTTT AAAACGGAGG 13855 .......... .......... .......... .......... .......... .......... 92 GATTATAAAA AAATCAATAT GATCCTTTTT TCTCCCAAAC AGAGGCATTC AATGTTTATA 13915 .......... .......... .......... .......... .......... .......... 92 TTAAATTAAT TTAATTTCGG GAAAATATAT AAGTACCTTC TTGACAATGA TCAAAATCTC 13975 .......... .......... .......... .......... .......... .......... 92 AGAAACACAT CTTAACTAAA CTAAGATCCT ACTACCTCTG ATTTTTTTTT TTTTTGTAAT 14035 .......... .......... .......... .......... .......... .......... 92 TTATGCACCT TTTTGGCTTA CGTGACATCC AAATATTTTC TAGCGCCTCA ATTGCGTGGG 14095 .......... .......... .......... .......... .......... .......... 92 GTCACGAAGA GTGTCATGTA AGACAAAAGA TGTATATTAT TACAAAAATA GAAGTTCAGG 14155 .......... .......... .......... .......... .......... .......... 92 GGTAATAAAA TCTTACTTTA ATTAAGGTGT CTTTCTGAAA TTCGGTCATA ATCTAGGTGG 14215 .......... .......... .......... .......... .......... .......... 92 TACTTGTGCT TTTTCCCTTT AATTTCTATT ACAATGTAAT TTAAGGAAGT AAAATTTATG 14275 .......... .......... .......... .......... .......... .......... 92 TTATAAAATT TAAACATATG ACAAATATGT ATTGAATTGA TATAAATATT TTGTGTGAAT 14335 .......... .......... .......... .......... .......... .......... 92 AAATTTTATC CCAGATAAAA CTAAGTCATT AATATTCCTT TAAATTCTAA AAGTTCATAT 14395 .......... .......... .......... .......... .......... .......... 92 TACTTTACTC AATGGAAAAA TAAATAAATA TATTTTTGTT GCAAAGAAAG CTCAGAATAT 14455 .......... .......... .......... .......... .......... .......... 92 AAGATGAAAA AGACAAAAAG TATAAGATAG AGGAGATAAT TTTCTTATTC AAGTATATCA 14515 .......... .......... .......... .......... .......... .......... 92 TACAATGGTG AATGATATCT CTATTTATAG TGTTGAGATA TCATATTCAA AGGTCACCTT 14575 .......... .......... .......... .......... .......... .......... 92 GAAATTTTAC ATAGTTATCA TCAAGGTTCA TATCACCTTG ATATCTTATC ACATTGGAAA 14635 .......... .......... .......... .......... .......... .......... 92 CACTAATACA TGAATTCAAT TAATTGTTGG ATAACTCTAA TAGATCATCC AGATATACAA 14695 || || ||||| .......... .......... .......... .......... ...ATTATTT TACACTACAA 109 TGAATTTACA ACACTCCCCC TTGGATATCC ATAGATTATG TGCCTCATTA AAACCTTACT 14755 | | |||||| |||||||||| ||||||||| || TTATTTTACA ACACTCCCCC TTGGATATCT ATGT...... .......... .......... 143 AGGAAAAACC CAGTGGGAAA AAGTCTAGTG AAGGAAAAAG AGTACACATA TCT-CATAAT 14814 ||| | |||||| | | | | |||||| .......... .......... .......... ...AAAAGAA AGTACATAGA TATACATAAT 170 ACGCTTTGAA TGTTGCCTCG TTAAAAACCT TACCATGAAA ACCCAACTTG GGACAAAACC 14874 ||||||| || |||||| |||||||||| ||||| |||| |||||||||| |||||||||| ACGCTTTATT TGCTGCCTCA TTAAAAACCT TACCAGGAAA ACCCAACTTG GGACAAAACC 230 ATAGTTAAGG AAAAGAGTAC AACGCGTATT TCGCTCCCCC TGATGAAAAC TTTACTTGAT 14934 |||||||||| |||||||||| |||||||||| || ||||||| |||||||||| |||||||||| ATAGTTAAGG AAAAGAGTAC AACGCGTATT TCACTCCCCC TGATGAAAAC TTTACTTGAT 290 ATCTCGGAGA CGGCGCATTC CAATCTTGTA TCTCAACTTC TCAAATGTTG ATGTTGGCAA 14994 |||| ||||| |||||||||| |||||||||| |||||||||| ||||| |||| |||||||||| ATCTTGGAGA CGGCGCATTC CAATCTTGTA TCTCAACTTC TCAAACGTTG ATGTTGGCAA 350 TGCCTTAGTG AATAAATCAG CAAGATTATC ACCTGAACGA ATTTGTTGAA CTTCTATCTC 15054 |||||| ||| |||||||||| |||||||||| || ||||||| |||||||||| |||||||||| TGCCTTTGTG AATAAATCAG CAAGATTATC ACTTGAACGA ATTTGTTGAA CTTCTATCTC 410 ACCATTTTGT TGAAGATCAT ACGTGAAAAA GAACTTTGGT GAGATATGCT TTGTCCGGTC 15114 |||||||||| |||||||||| ||||||||| |||||||||| |||||||||| |||||||||| ACCATTTTGT TGAAGATCAT GCGTGAAAAA GAACTTTGGT GAGATATGCT TTGTCCGGTC 470 TCCTTTGATG TATCCTCCTT TCAATTGAAC TATACATGCA GCATTATCTT CGTACATTGT 15174 |||||||||| |||||||||| |||||||| | |||||||||| |||||||||| |||||||||| TCCTTTGATG TATCCTCCTT TCAATTGAGC TATACATGCA GCATTATCTT CGTACATTGT 530 GGTTGGTATA TTCTTTTTCA AAGAAAAACC ACACATTT 15212 |||||||||| |||||||||| |||||||||| |||||||| GGTTGGTATA TTCTTTTTCA AAGAAAAACC ACACATTT 568 hqPGS_C06HBa0054K13.1-12+_SGN-E349274- (14679 14729,14789 15212) ******************************************************************************** EST sequence 15 -strand 565 n (File: SGN-E356171-) 1 TTTATATGTT TCATATAGTG GCTATTTATA GCCATACATT AATGCATACA AGGTCATTAG 61 TGATGTCATA TTCCACATGA CACTACAATT ATTTTACACT ACAATTATTT TACAACACTC 121 CCCCTTGGAT ATCTATGTAA AAGAAAGTAC ATAGATATAC ATAATACGCT TTATTTGCTG 181 CCTCATTAAA AACCTTACCA GGAAAACCCA ACTTGGGACA AAACCATAGT TAAGGAAAAG 241 AGTACAACGC GTATTTCACT CCCCCTGATG AAAACTTTAC TTGATATCTT GGAGACGGCG 301 CATTCCAATC TTGTATCTCA ACTTCTCAAA CGTTGATGTT GGCAATGCCT TTGTGAATAA 361 ATCAGCAAGA TTATCACTTG AACGAATTTG TTGAACTTCT ATCTCACCAT TTTGTTGAAG 421 ATCATGCGTG AAAAAGAACT TTGGTGAGAT ATGCTTTGTC CGGTCTCCTT TGATGTATCC 481 TCCTTTCAAT TGAGCTATAC ATGCAGCATT ATCTTCGTAC ATTGTGGTTG GTATATTCTT 541 TTTCAAAGAA AAACCACACA TTTCC Predicted gene structure (within gDNA segment 12231 to 15832): Exon 1 14679 14729 ( 51 n); cDNA 88 138 ( 51 n); score: 0.745 Intron 1 14730 14788 ( 59 n); Pd: 0.000 (s: 0.74), Pa: 0.000 (s: 0.72) Exon 2 14789 15212 ( 424 n); cDNA 139 563 ( 425 n); score: 0.949 MATCH C06HBa0054K13.1-12+ SGN-E356171- 0.927 475 0.841 C PGS_C06HBa0054K13.1-12+_SGN-E356171- (14679 14729,14789 15212) Alignment (genomic DNA sequence = upper lines): ATCATCCAGA TATACAATGA ATTTACAACA CTCCCCCTTG GATATCCATA GATTATGTGC 14738 || || |||||| | ||||||||| |||||||||| |||||| || ATTATTTTAC ACTACAATTA TTTTACAACA CTCCCCCTTG GATATCTATG T......... 138 CTCATTAAAA CCTTACTAGG AAAAACCCAG TGGGAAAAAG TCTAGTGAAG GAAAAAGAGT 14798 ||| | ||| .......... .......... .......... .......... .......... AAAAGAAAGT 148 ACACATATCT -CATAATACG CTTTGAATGT TGCCTCGTTA AAAACCTTAC CATGAAAACC 14857 ||| | || | ||||||||| |||| || |||||| ||| |||||||||| || ||||||| ACATAGATAT ACATAATACG CTTTATTTGC TGCCTCATTA AAAACCTTAC CAGGAAAACC 208 CAACTTGGGA CAAAACCATA GTTAAGGAAA AGAGTACAAC GCGTATTTCG CTCCCCCTGA 14917 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| |||||||||| CAACTTGGGA CAAAACCATA GTTAAGGAAA AGAGTACAAC GCGTATTTCA CTCCCCCTGA 268 TGAAAACTTT ACTTGATATC TCGGAGACGG CGCATTCCAA TCTTGTATCT CAACTTCTCA 14977 |||||||||| |||||||||| | |||||||| |||||||||| |||||||||| |||||||||| TGAAAACTTT ACTTGATATC TTGGAGACGG CGCATTCCAA TCTTGTATCT CAACTTCTCA 328 AATGTTGATG TTGGCAATGC CTTAGTGAAT AAATCAGCAA GATTATCACC TGAACGAATT 15037 || ||||||| |||||||||| ||| |||||| |||||||||| ||||||||| |||||||||| AACGTTGATG TTGGCAATGC CTTTGTGAAT AAATCAGCAA GATTATCACT TGAACGAATT 388 TGTTGAACTT CTATCTCACC ATTTTGTTGA AGATCATACG TGAAAAAGAA CTTTGGTGAG 15097 |||||||||| |||||||||| |||||||||| ||||||| || |||||||||| |||||||||| TGTTGAACTT CTATCTCACC ATTTTGTTGA AGATCATGCG TGAAAAAGAA CTTTGGTGAG 448 ATATGCTTTG TCCGGTCTCC TTTGATGTAT CCTCCTTTCA ATTGAACTAT ACATGCAGCA 15157 |||||||||| |||||||||| |||||||||| |||||||||| ||||| |||| |||||||||| ATATGCTTTG TCCGGTCTCC TTTGATGTAT CCTCCTTTCA ATTGAGCTAT ACATGCAGCA 508 TTATCTTCGT ACATTGTGGT TGGTATATTC TTTTTCAAAG AAAAACCACA CATTT 15212 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||| TTATCTTCGT ACATTGTGGT TGGTATATTC TTTTTCAAAG AAAAACCACA CATTT 563 hqPGS_C06HBa0054K13.1-12+_SGN-E356171- (14679 14729,14789 15212) ******************************************************************************** EST sequence 17 -strand 533 n (File: SGN-E356678-) 1 CATCCATTAA TGCATCCAAG GTCATTAGTG ATGTCATATT CCACATGCCA TTACAATTAT 61 TTTCCACTCC AATTATTTTA CACCACTCCC CCTTGGATAT CTATGTAAAA GAAAGTACAT 121 AGATATACAT AATACGCTTT ATTTGCTGCC TCATTAAAAA CCTTACCAGG AAAACCCAAC 181 TTGGGACAAA ACCATAGTTA AGGAAAAGAG TACAACGCGT ATTTCACTCC CCCTGATGAA 241 AACTTTACTT GATATCTTGG AGACGGCGCA TTCCAATCTT GTATCTCAAC TTCTCAAACG 301 TTGATGTTGG CAATGCCTTT GTGAATAAAT CAGCAAGATT ATCACTTGAA CGAATTTGTT 361 GAACTTCTAT CTCACCATTT TGTTGAAGAT CATGCGTGAA AAAGAACTTT GGTGAGATAT 421 GCTTTGTCCG GTCTCCTTTG ATGTATCCTC CTTTCAATTG AGCTATACAT GCAGCATTAT 481 CTTCGTACAT TGTGGTTGGT ATATTCTTTT TCAAAGAAAA ACCACACATT TCC Predicted gene structure (within gDNA segment 12551 to 15832): Exon 1 14694 14729 ( 36 n); cDNA 71 106 ( 36 n); score: 0.833 Intron 1 14730 14788 ( 59 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.72) Exon 2 14789 15212 ( 424 n); cDNA 107 531 ( 425 n); score: 0.949 MATCH C06HBa0054K13.1-12+ SGN-E356678- 0.949 460 0.863 C PGS_C06HBa0054K13.1-12+_SGN-E356678- (14694 14729,14789 15212) Alignment (genomic DNA sequence = upper lines): AATGAATTTA CAACACTCCC CCTTGGATAT CCATAGATTA TGTGCCTCAT TAAAACCTTA 14753 ||| | |||| || ||||||| |||||||||| | || AATTATTTTA CACCACTCCC CCTTGGATAT CTATGT.... .......... .......... 106 CTAGGAAAAA CCCAGTGGGA AAAAGTCTAG TGAAGGAAAA AGAGTACACA TATCT-CATA 14812 ||| | |||||| | || | |||| .......... .......... .......... .....AAAAG AAAGTACATA GATATACATA 131 ATACGCTTTG AATGTTGCCT CGTTAAAAAC CTTACCATGA AAACCCAACT TGGGACAAAA 14872 ||||||||| || ||||| | |||||||| ||||||| || |||||||||| |||||||||| ATACGCTTTA TTTGCTGCCT CATTAAAAAC CTTACCAGGA AAACCCAACT TGGGACAAAA 191 CCATAGTTAA GGAAAAGAGT ACAACGCGTA TTTCGCTCCC CCTGATGAAA ACTTTACTTG 14932 |||||||||| |||||||||| |||||||||| |||| ||||| |||||||||| |||||||||| CCATAGTTAA GGAAAAGAGT ACAACGCGTA TTTCACTCCC CCTGATGAAA ACTTTACTTG 251 ATATCTCGGA GACGGCGCAT TCCAATCTTG TATCTCAACT TCTCAAATGT TGATGTTGGC 14992 |||||| ||| |||||||||| |||||||||| |||||||||| ||||||| || |||||||||| ATATCTTGGA GACGGCGCAT TCCAATCTTG TATCTCAACT TCTCAAACGT TGATGTTGGC 311 AATGCCTTAG TGAATAAATC AGCAAGATTA TCACCTGAAC GAATTTGTTG AACTTCTATC 15052 |||||||| | |||||||||| |||||||||| |||| ||||| |||||||||| |||||||||| AATGCCTTTG TGAATAAATC AGCAAGATTA TCACTTGAAC GAATTTGTTG AACTTCTATC 371 TCACCATTTT GTTGAAGATC ATACGTGAAA AAGAACTTTG GTGAGATATG CTTTGTCCGG 15112 |||||||||| |||||||||| || ||||||| |||||||||| |||||||||| |||||||||| TCACCATTTT GTTGAAGATC ATGCGTGAAA AAGAACTTTG GTGAGATATG CTTTGTCCGG 431 TCTCCTTTGA TGTATCCTCC TTTCAATTGA ACTATACATG CAGCATTATC TTCGTACATT 15172 |||||||||| |||||||||| |||||||||| ||||||||| |||||||||| |||||||||| TCTCCTTTGA TGTATCCTCC TTTCAATTGA GCTATACATG CAGCATTATC TTCGTACATT 491 GTGGTTGGTA TATTCTTTTT CAAAGAAAAA CCACACATTT 15212 |||||||||| |||||||||| |||||||||| |||||||||| GTGGTTGGTA TATTCTTTTT CAAAGAAAAA CCACACATTT 531 hqPGS_C06HBa0054K13.1-12+_SGN-E356678- (14694 14729,14789 15212) ******************************************************************************** EST sequence 18 -strand 481 n (File: SGN-E208613-) 1 TAAATACCCT GCATCTGCGT AACCAATCAG TTCTGATTTG GATTCATTGG AATAGAATAA 61 ACCCATGTCC ATGGTCCCTC GAAGATATCG AAGTATGTGT TTAACGCCAT TCCAATGTCT 121 TTTTGTTGGG GAGGAACTGA ATCTTGCCAG TAGACTTACT GCAAAACAGA TATCTGGTCG 181 AGTATTGTTA GCAAGATGCA CTAGTGCCCT GATTGCACCA AGATAGAGTT TCATCACCAA 241 GAAACTCATC ATCCTTCTTT TGAGATCAAA CTGAATCATC ATTTATGACA AGTGATCTCA 301 TAATCATTGG GGTACTCAAT GAATGCGATA TATCCACATA AAATTGCATC AAAATTTTTC 361 AGTGTATGTG CACTGTTAGA CAAATATTTT ATTTGTCAAA TTAACAATCT GTAGGTCAAG 421 ACAAAATTTT GTCTTACCAA GACCTTTTCA TAAAAATACA AGGACAATTA GGATCATTCT 481 T Predicted gene structure (within gDNA segment 14706 to 19051): Exon 1 15397 15834 ( 438 n); cDNA 1 435 ( 435 n); score: 0.858 Intron 1 15835 15950 ( 116 n); Pd: 0.000 (s: 0.86), Pa: 0.000 (s: 0.74) Exon 2 15951 15996 ( 46 n); cDNA 436 481 ( 46 n); score: 0.739 MATCH C06HBa0054K13.1-12+ SGN-E208613- 0.858 484 1.006 C PGS_C06HBa0054K13.1-12+_SGN-E208613- (15397 15834,15951 15996) Alignment (genomic DNA sequence = upper lines): TAAATACCGT GCATCTGCGT AACCAATCAG TTCTGATTTG GATTCATTGG AATAGAATAA 15456 |||||||| | |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAAATACCCT GCATCTGCGT AACCAATCAG TTCTGATTTG GATTCATTGG AATAGAATAA 60 ACCCATGTGC ATGGTCCCTC GAAGATATCG AAATATGTGT TTAACACCAT TCCAATGTCT 15516 |||||||| | |||||||||| |||||||||| || ||||||| ||||| |||| |||||||||| ACCCATGTCC ATGGTCCCTC GAAGATATCG AAGTATGTGT TTAACGCCAT TCCAATGTCT 120 TTTTGTTGGG GAGGAACTGA ATCTTGCTAG TAGACTTACT GCAAAATAGA TATCTGGTCG 15576 |||||||||| |||||||||| ||||||| || |||||||||| |||||| ||| |||||||||| TTTTGTTGGG GAGGAACTGA ATCTTGCCAG TAGACTTACT GCAAAACAGA TATCTGGTCG 180 AGTATTGTTA GCAAGGTACA TTAGTGCCCC GATCGCACTA AGATAAGGAG TTTCATCACC 15636 |||||||||| ||||| | || |||||||| ||| |||| | |||| | ||| |||||||||| AGTATTGTTA GCAAGATGCA CTAGTGCCCT GATTGCACCA AGAT-A-GAG TTTCATCACC 238 AAGAAGCTCT TCATCATTCT CTTGAGGTCG AAATGGATCT GTATTGATGT CAAGCGATCT 15696 ||||| ||| ||||| |||| ||||| || || || ||| ||| ||| |||| ||||| AAGAAACTCA TCATCCTTCT TTTGAGATCA AACTGAATCA TCATTTATGA CAAGTGATCT 298 TACCACCATT GGAGTACTCA ATGGATGTGA GTTATCCATG TAAAAACGCT TTAGTATCTT 15756 | | |||| || ||||||| ||| ||| || |||||| ||||| || | | || || CATAATCATT GGGGTACTCA ATGAATGCGA TATATCCACA TAAAATTGCA TCAAAAT-TT 357 TTCTGTGTAC GTTGATTGAT GAACAAGTAT TCCATTTGAC AAATTCTCAA TCTGTAGGCC 15816 ||| ||||| || | || | |||| ||| | ||||| | ||||| ||| |||||||| | TTCAGTGTAT GTGCACTGTT AGACAAATAT TTTATTTGTC AAATTAACAA TCTGTAGGTC 417 AAGATAAAAT TTTGTCTTGC CGAGATCTTT CATTTCAAAT TCTTTTTTCA GACACTCAAC 15876 |||| ||||| |||||||| AAGACAAAAT TTTGTCTT.. .......... .......... .......... .......... 435 AGCTTTTAAA AGCTCTTTAT GAGTGCCAAT GATGTTCAAA CCATCAACAT ACACAACTAT 15936 .......... .......... .......... .......... .......... .......... 435 TATTACAAAT TAAGACCCCG ACTGTTTAAT GAAAATGCAG GGACAAATCG GGTCATTTTT 15996 ||| | || ||| || ||||| || |||||| | | | ||||| || .......... ....ACCAAG ACCTTTTCAT AAAAATACAA GGACAATTAG GATCATTCTT 481 hqPGS_C06HBa0054K13.1-12+_SGN-E208613- (15397 15834,15951 15996) ******************************************************************************** EST sequence 23 -strand 566 n (File: SGN-E350222-) 1 TTTATATGTT TCATATAGTG GCTATTTATA GCCATACATT AATGCATACA AGGTCATTAG 61 TGATGTCATA TTCCACATGA CACTACAATT ATTTTACACT ACAATTATTT TACAACACTC 121 CCCCCTTGGA TATCTATGTA AAAGAAAGTA CATAGATATA CATAATACGC TTTATTTGCT 181 GCCTCATTAA AAACCTTACC AGGAAAACCC AACTTGGGAC AAAACCATAG TTAAGGAAAA 241 GAGTACAACG CGTATTTCAC TCCCCCTGAT GAAAACTTTA CTTGATATCT TGGAGACGGC 301 GCATTCCAAT CTTGTATCTC AACTTCTCAA ACGTTGATGT TGGCAATGCC TTTGTGAATA 361 AATCAGCAAG ATTATCACTT GAACGAATTT GTTGAACTTC TATCTCACCA TTTTGTTGAA 421 GATCATGCGT GAAAAAGAAC TTTGGTGAGA TATGCTTTGT CCGGTCTCCT TTGATGTATC 481 CTCCTTTCAA TTGAGCTATA CATGCAGCAT TATCTTCGTA CATTGTGGTT GGTATATTCT 541 TTTTCAAAGA AAAACCACAC ATTTCC Predicted gene structure (within gDNA segment 12221 to 15832): Exon 1 14679 14729 ( 51 n); cDNA 88 139 ( 52 n); score: 0.696 Intron 1 14730 14788 ( 59 n); Pd: 0.000 (s: 0.68), Pa: 0.000 (s: 0.72) Exon 2 14789 15212 ( 424 n); cDNA 140 564 ( 425 n); score: 0.949 MATCH C06HBa0054K13.1-12+ SGN-E350222- 0.922 475 0.839 C PGS_C06HBa0054K13.1-12+_SGN-E350222- (14679 14729,14789 15212) Alignment (genomic DNA sequence = upper lines): ATCATCCAGA TATACAATGA ATTTACAACA CT-CCCCCTT GGATATCCAT AGATTATGTG 14737 || || |||||| | ||||||||| || ||||||| ||||||| || ATTATTTTAC ACTACAATTA TTTTACAACA CTCCCCCCTT GGATATCTAT GT........ 139 CCTCATTAAA ACCTTACTAG GAAAAACCCA GTGGGAAAAA GTCTAGTGAA GGAAAAAGAG 14797 ||| | || .......... .......... .......... .......... .......... .AAAAGAAAG 148 TACACATATC T-CATAATAC GCTTTGAATG TTGCCTCGTT AAAAACCTTA CCATGAAAAC 14856 |||| | || | |||||||| ||||| || |||||| || |||||||||| ||| |||||| TACATAGATA TACATAATAC GCTTTATTTG CTGCCTCATT AAAAACCTTA CCAGGAAAAC 208 CCAACTTGGG ACAAAACCAT AGTTAAGGAA AAGAGTACAA CGCGTATTTC GCTCCCCCTG 14916 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| CCAACTTGGG ACAAAACCAT AGTTAAGGAA AAGAGTACAA CGCGTATTTC ACTCCCCCTG 268 ATGAAAACTT TACTTGATAT CTCGGAGACG GCGCATTCCA ATCTTGTATC TCAACTTCTC 14976 |||||||||| |||||||||| || ||||||| |||||||||| |||||||||| |||||||||| ATGAAAACTT TACTTGATAT CTTGGAGACG GCGCATTCCA ATCTTGTATC TCAACTTCTC 328 AAATGTTGAT GTTGGCAATG CCTTAGTGAA TAAATCAGCA AGATTATCAC CTGAACGAAT 15036 ||| |||||| |||||||||| |||| ||||| |||||||||| |||||||||| ||||||||| AAACGTTGAT GTTGGCAATG CCTTTGTGAA TAAATCAGCA AGATTATCAC TTGAACGAAT 388 TTGTTGAACT TCTATCTCAC CATTTTGTTG AAGATCATAC GTGAAAAAGA ACTTTGGTGA 15096 |||||||||| |||||||||| |||||||||| |||||||| | |||||||||| |||||||||| TTGTTGAACT TCTATCTCAC CATTTTGTTG AAGATCATGC GTGAAAAAGA ACTTTGGTGA 448 GATATGCTTT GTCCGGTCTC CTTTGATGTA TCCTCCTTTC AATTGAACTA TACATGCAGC 15156 |||||||||| |||||||||| |||||||||| |||||||||| |||||| ||| |||||||||| GATATGCTTT GTCCGGTCTC CTTTGATGTA TCCTCCTTTC AATTGAGCTA TACATGCAGC 508 ATTATCTTCG TACATTGTGG TTGGTATATT CTTTTTCAAA GAAAAACCAC ACATTT 15212 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||| ATTATCTTCG TACATTGTGG TTGGTATATT CTTTTTCAAA GAAAAACCAC ACATTT 564 hqPGS_C06HBa0054K13.1-12+_SGN-E350222- (14789 15212) ******************************************************************************** EST sequence 7 -strand 381 n (File: SGN-E351886-) 1 ATTAAAACCC TTACCAGGAA AACCCAACTT GGGACAAACC CATAGTTAAG GAAAAGAGTA 61 CAACGCGTAT TTCACTCCCC CTGATGAAAA CTTTACTTGA TATCTTGGAG ACGGCGCATT 121 CCAATCTTGT ATCTCAACTT CTCAAACGTT GATGTTGGCA ATGCCTTTGT GAATAAATCA 181 GCAAGATTAT CACTTGAACG AATTTGTTGA ACTTCTATCT CACCATTTTG TTGAAGATCA 241 TGCGTGAAAA AGAACTTTGG TGAGATATGC TTTGTCCGGT CTCCTTTGAT GTATCCTCCT 301 TTCAATTGAG CTATACATGC AGCATTATCT TCGTACATTG TGGTTGGTAT ATTCTTTTTC 361 AAAGAAAAAC CACACATTTC C Predicted gene structure (within gDNA segment 14071 to 15832): Exon 1 14835 15212 ( 378 n); cDNA 2 379 ( 378 n); score: 0.974 MATCH C06HBa0054K13.1-12+ SGN-E351886- 0.974 378 0.992 C PGS_C06HBa0054K13.1-12+_SGN-E351886- (14835 15212) Alignment (genomic DNA sequence = upper lines): TTAAAAACCT TACCATGAAA ACCCAACTTG GGACAAAACC ATAGTTAAGG AAAAGAGTAC 14894 |||||| ||| ||||| |||| |||||||||| ||||||| || |||||||||| |||||||||| TTAAAACCCT TACCAGGAAA ACCCAACTTG GGACAAACCC ATAGTTAAGG AAAAGAGTAC 61 AACGCGTATT TCGCTCCCCC TGATGAAAAC TTTACTTGAT ATCTCGGAGA CGGCGCATTC 14954 |||||||||| || ||||||| |||||||||| |||||||||| |||| ||||| |||||||||| AACGCGTATT TCACTCCCCC TGATGAAAAC TTTACTTGAT ATCTTGGAGA CGGCGCATTC 121 CAATCTTGTA TCTCAACTTC TCAAATGTTG ATGTTGGCAA TGCCTTAGTG AATAAATCAG 15014 |||||||||| |||||||||| ||||| |||| |||||||||| |||||| ||| |||||||||| CAATCTTGTA TCTCAACTTC TCAAACGTTG ATGTTGGCAA TGCCTTTGTG AATAAATCAG 181 CAAGATTATC ACCTGAACGA ATTTGTTGAA CTTCTATCTC ACCATTTTGT TGAAGATCAT 15074 |||||||||| || ||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAGATTATC ACTTGAACGA ATTTGTTGAA CTTCTATCTC ACCATTTTGT TGAAGATCAT 241 ACGTGAAAAA GAACTTTGGT GAGATATGCT TTGTCCGGTC TCCTTTGATG TATCCTCCTT 15134 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCGTGAAAAA GAACTTTGGT GAGATATGCT TTGTCCGGTC TCCTTTGATG TATCCTCCTT 301 TCAATTGAAC TATACATGCA GCATTATCTT CGTACATTGT GGTTGGTATA TTCTTTTTCA 15194 |||||||| | |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCAATTGAGC TATACATGCA GCATTATCTT CGTACATTGT GGTTGGTATA TTCTTTTTCA 361 AAGAAAAACC ACACATTT 15212 |||||||||| |||||||| AAGAAAAACC ACACATTT 379 hqPGS_C06HBa0054K13.1-12+_SGN-E351886- (14835 15212) ******************************************************************************** EST sequence 6 -strand 765 n (File: SGN-E211563-) 1 CAACTTCTCA AACGNTGATG TTGGCAATGC CTTTGTGAAT AAATCAGCAA GATTATCACT 61 TGAACGAATT TGTTGNACTT CTATCTCACC CATTTTGTTG AAGATCATGC GTGAAAAAGA 121 ACTTTGGTGA GATATGCTTT GTCCGGTCTC CTTTGATGTA TCCTCCTTTC AATTGAGCTA 181 TACATGCAGC ATTATCTTCG TACATTATGG TTGGTATATT CTTTTTCAAA GAAAAACCAC 241 ACATTTCCTG AATATGATGG GTCATTGATC TCAACCAGAC GCACTCTCGA CTTGCTTCAT 301 GGATGGCTAT TATTTCTGCA TGATTTGAAG AAGTGGCTAC CAACGTTTGC TTCATTGATC 361 GCCAAGATAT TGCCGTGTCT CCACATGTAA ACAAATAGCC TGTTTGTGAT CGGGCTTTAT 421 GCGGATCTGA TAAATACCCT GCATCTGCGT AACCAATCAG TTCTGATTTG GATTCATTGG 481 AATAGAATAA ACCCATGTCC ATGGTCCCTC GAAGATATCG AAGTATGTGT TTAACACCAT 541 TCCAATGTCT TTTTGTTGGG GAGGAACTGA ATCTTGCCAG TAGACTTACT GCAAAACAGA 601 TATCTGGTCG AGTATTGTTA GCAAGGTACA TTAGTGCCCC GATCGCACTA AGATAAGGAG 661 TTTCATCACC AAGAAGCTCT TCATCATTCT CTTGAGGTCG AAATGGATCT GTATTGATGT 721 CAAGCGATCT TACCACCATT GGAGTACTCA ATGGATGTGA GTTAT Predicted gene structure (within gDNA segment 14223 to 16331): Exon 1 14968 15731 ( 764 n); cDNA 1 765 ( 765 n); score: 0.969 MATCH C06HBa0054K13.1-12+ SGN-E211563- 0.969 764 0.999 C PGS_C06HBa0054K13.1-12+_SGN-E211563- (14968 15731) Alignment (genomic DNA sequence = upper lines): CAACTTCTCA AATGTTGATG TTGGCAATGC CTTAGTGAAT AAATCAGCAA GATTATCACC 15027 |||||||||| || | ||||| |||||||||| ||| |||||| |||||||||| ||||||||| CAACTTCTCA AACGNTGATG TTGGCAATGC CTTTGTGAAT AAATCAGCAA GATTATCACT 60 TGAACGAATT TGTTGAACTT CTATCTCA-C CATTTTGTTG AAGATCATAC GTGAAAAAGA 15086 |||||||||| ||||| |||| |||||||| | |||||||||| |||||||| | |||||||||| TGAACGAATT TGTTGNACTT CTATCTCACC CATTTTGTTG AAGATCATGC GTGAAAAAGA 120 ACTTTGGTGA GATATGCTTT GTCCGGTCTC CTTTGATGTA TCCTCCTTTC AATTGAACTA 15146 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||| ||| ACTTTGGTGA GATATGCTTT GTCCGGTCTC CTTTGATGTA TCCTCCTTTC AATTGAGCTA 180 TACATGCAGC ATTATCTTCG TACATTGTGG TTGGTATATT CTTTTTCAAA GAAAAACCAC 15206 |||||||||| |||||||||| |||||| ||| |||||||||| |||||||||| |||||||||| TACATGCAGC ATTATCTTCG TACATTATGG TTGGTATATT CTTTTTCAAA GAAAAACCAC 240 ACATTTTCTG AATATGATGG GTCATTGATC TCAACCAGAC GCACTCACGA CTTGCTTCAT 15266 |||||| ||| |||||||||| |||||||||| |||||||||| |||||| ||| |||||||||| ACATTTCCTG AATATGATGG GTCATTGATC TCAACCAGAC GCACTCTCGA CTTGCTTCAT 300 GGATGGCTAT TATTTCTGCA TGATTTGAAG AAGTGGCTAC CAACGTTTGC TTCATTGATC 15326 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGATGGCTAT TATTTCTGCA TGATTTGAAG AAGTGGCTAC CAACGTTTGC TTCATTGATC 360 GCCAAGATAT TGTCATGTCT CCACATGTAA ACAAATATCC TGTTTGTGAT CAAGCTTTAT 15386 |||||||||| || | ||||| |||||||||| ||||||| || |||||||||| | ||||||| GCCAAGATAT TGCCGTGTCT CCACATGTAA ACAAATAGCC TGTTTGTGAT CGGGCTTTAT 420 GAGGATCTGA TAAATACCGT GCATCTGCGT AACCAATCAG TTCTGATTTG GATTCATTGG 15446 | |||||||| |||||||| | |||||||||| |||||||||| |||||||||| |||||||||| GCGGATCTGA TAAATACCCT GCATCTGCGT AACCAATCAG TTCTGATTTG GATTCATTGG 480 AATAGAATAA ACCCATGTGC ATGGTCCCTC GAAGATATCG AAATATGTGT TTAACACCAT 15506 |||||||||| |||||||| | |||||||||| |||||||||| || ||||||| |||||||||| AATAGAATAA ACCCATGTCC ATGGTCCCTC GAAGATATCG AAGTATGTGT TTAACACCAT 540 TCCAATGTCT TTTTGTTGGG GAGGAACTGA ATCTTGCTAG TAGACTTACT GCAAAATAGA 15566 |||||||||| |||||||||| |||||||||| ||||||| || |||||||||| |||||| ||| TCCAATGTCT TTTTGTTGGG GAGGAACTGA ATCTTGCCAG TAGACTTACT GCAAAACAGA 600 TATCTGGTCG AGTATTGTTA GCAAGGTACA TTAGTGCCCC GATCGCACTA AGATAAGGAG 15626 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATCTGGTCG AGTATTGTTA GCAAGGTACA TTAGTGCCCC GATCGCACTA AGATAAGGAG 660 TTTCATCACC AAGAAGCTCT TCATCATTCT CTTGAGGTCG AAATGGATCT GTATTGATGT 15686 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTCATCACC AAGAAGCTCT TCATCATTCT CTTGAGGTCG AAATGGATCT GTATTGATGT 720 CAAGCGATCT TACCACCATT GGAGTACTCA ATGGATGTGA GTTAT 15731 |||||||||| |||||||||| |||||||||| |||||||||| ||||| CAAGCGATCT TACCACCATT GGAGTACTCA ATGGATGTGA GTTAT 765 hqPGS_C06HBa0054K13.1-12+_SGN-E211563- (14968 15731) ******************************************************************************** EST sequence 22 -strand 399 n (File: SGN-E200850-) 1 GTGAATAAAT CAGCAAGATT ATCACTTGAA CGAATTTGTT GAACTTCTAT CTCACCATTT 61 TGTTAAAGAT CATGCGTGAA AAAGAACTTT GGTGAGATAT GCTTTGTCCG GTCTCCTTTG 121 ATGTATCCTC CTTTCAATTG AGCTATACAT GCAGCATTAT CTTCGTGCAT TGTGGTTGGT 181 ATATTCTTTT TCAAAGAAAA ACCACACATT TCCTGAATAT GATGGGTCAT TGATCTCAAC 241 CAGACGCACT CTCGACTTGC TTCATGGATG GCTATTATTT CTGCATGATT TGAAGAAGTG 301 GCTACCAACG TTTGCTTCAT TGATCGCCAA GATATTGCCG TGTCTCCACA TGTAAACAAA 361 TAGCCTGTTT GTGATCGGGC TTTATGCGGA TCTGATAAA Predicted gene structure (within gDNA segment 14392 to 16333): Exon 1 15002 15400 ( 399 n); cDNA 1 399 ( 399 n); score: 0.967 MATCH C06HBa0054K13.1-12+ SGN-E200850- 0.967 399 1.000 C PGS_C06HBa0054K13.1-12+_SGN-E200850- (15002 15400) Alignment (genomic DNA sequence = upper lines): GTGAATAAAT CAGCAAGATT ATCACCTGAA CGAATTTGTT GAACTTCTAT CTCACCATTT 15061 |||||||||| |||||||||| ||||| |||| |||||||||| |||||||||| |||||||||| GTGAATAAAT CAGCAAGATT ATCACTTGAA CGAATTTGTT GAACTTCTAT CTCACCATTT 60 TGTTGAAGAT CATACGTGAA AAAGAACTTT GGTGAGATAT GCTTTGTCCG GTCTCCTTTG 15121 |||| ||||| ||| |||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTTAAAGAT CATGCGTGAA AAAGAACTTT GGTGAGATAT GCTTTGTCCG GTCTCCTTTG 120 ATGTATCCTC CTTTCAATTG AACTATACAT GCAGCATTAT CTTCGTACAT TGTGGTTGGT 15181 |||||||||| |||||||||| | |||||||| |||||||||| |||||| ||| |||||||||| ATGTATCCTC CTTTCAATTG AGCTATACAT GCAGCATTAT CTTCGTGCAT TGTGGTTGGT 180 ATATTCTTTT TCAAAGAAAA ACCACACATT TTCTGAATAT GATGGGTCAT TGATCTCAAC 15241 |||||||||| |||||||||| |||||||||| | |||||||| |||||||||| |||||||||| ATATTCTTTT TCAAAGAAAA ACCACACATT TCCTGAATAT GATGGGTCAT TGATCTCAAC 240 CAGACGCACT CACGACTTGC TTCATGGATG GCTATTATTT CTGCATGATT TGAAGAAGTG 15301 |||||||||| | |||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAGACGCACT CTCGACTTGC TTCATGGATG GCTATTATTT CTGCATGATT TGAAGAAGTG 300 GCTACCAACG TTTGCTTCAT TGATCGCCAA GATATTGTCA TGTCTCCACA TGTAAACAAA 15361 |||||||||| |||||||||| |||||||||| ||||||| | |||||||||| |||||||||| GCTACCAACG TTTGCTTCAT TGATCGCCAA GATATTGCCG TGTCTCCACA TGTAAACAAA 360 TATCCTGTTT GTGATCAAGC TTTATGAGGA TCTGATAAA 15400 || ||||||| |||||| || |||||| ||| ||||||||| TAGCCTGTTT GTGATCGGGC TTTATGCGGA TCTGATAAA 399 hqPGS_C06HBa0054K13.1-12+_SGN-E200850- (15002 15400) ******************************************************************************** EST sequence 8 -strand 571 n (File: SGN-E201786-) 1 TTCAATTGAG CTATACATGC AGCATTATCT TCGGACAATA AGGGTGGTAT ATTCTTTTTC 61 AAAGAAAAAC CACACATTTC CTGAATATGA TGGGTCATTG ATCTCAACCA GACGCACTCT 121 CGACTTGCTT CATGGATGGC TATTATTTCT GCATGATTTG AAGAAGTGGC TACCAACGTT 181 TGCTTCATTG ATCGCCAAGA TATTGCCGTG TCTCCACATG TAAACAAATA GCCTGTTTGT 241 GATCGGGCTT TATGCGGATC TGATAAATAC CCTGCATCTG CGTAACCAAT CAGTTCTGAT 301 TTGGATTCAT TGGAATAGAA TAAACCCATG TCCATGGTCC CTCGAAGATA TCGAAGTATG 361 TGTTTAACAC CATTCCAATG TCTTTTTGTT GGGGAGGAAC TGAATCTTGC CAGTAGACTT 421 ACTGCAAAAC AGATATCTGG TCGAGTATTG TTAGCAAGGT ACATTAGTGC CCCGATCGCA 481 CTAAGATAAG GAGTTTCATC ACCAAGAAGC TCTTCATCAT TCTCTTGAGG TCGAAATGGA 541 TCTGTATTGA TGTCAAGCGA TCTTACCACC A Predicted gene structure (within gDNA segment 14434 to 16304): Exon 1 15134 15704 ( 571 n); cDNA 1 571 ( 571 n); score: 0.967 MATCH C06HBa0054K13.1-12+ SGN-E201786- 0.967 571 1.000 C PGS_C06HBa0054K13.1-12+_SGN-E201786- (15134 15704) Alignment (genomic DNA sequence = upper lines): TTCAATTGAA CTATACATGC AGCATTATCT TCGTACATTG TGGTTGGTAT ATTCTTTTTC 15193 ||||||||| |||||||||| |||||||||| ||| ||| | || |||||| |||||||||| TTCAATTGAG CTATACATGC AGCATTATCT TCGGACAATA AGGGTGGTAT ATTCTTTTTC 60 AAAGAAAAAC CACACATTTT CTGAATATGA TGGGTCATTG ATCTCAACCA GACGCACTCA 15253 |||||||||| ||||||||| |||||||||| |||||||||| |||||||||| ||||||||| AAAGAAAAAC CACACATTTC CTGAATATGA TGGGTCATTG ATCTCAACCA GACGCACTCT 120 CGACTTGCTT CATGGATGGC TATTATTTCT GCATGATTTG AAGAAGTGGC TACCAACGTT 15313 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGACTTGCTT CATGGATGGC TATTATTTCT GCATGATTTG AAGAAGTGGC TACCAACGTT 180 TGCTTCATTG ATCGCCAAGA TATTGTCATG TCTCCACATG TAAACAAATA TCCTGTTTGT 15373 |||||||||| |||||||||| ||||| | || |||||||||| |||||||||| ||||||||| TGCTTCATTG ATCGCCAAGA TATTGCCGTG TCTCCACATG TAAACAAATA GCCTGTTTGT 240 GATCAAGCTT TATGAGGATC TGATAAATAC CGTGCATCTG CGTAACCAAT CAGTTCTGAT 15433 |||| |||| |||| ||||| |||||||||| | |||||||| |||||||||| |||||||||| GATCGGGCTT TATGCGGATC TGATAAATAC CCTGCATCTG CGTAACCAAT CAGTTCTGAT 300 TTGGATTCAT TGGAATAGAA TAAACCCATG TGCATGGTCC CTCGAAGATA TCGAAATATG 15493 |||||||||| |||||||||| |||||||||| | |||||||| |||||||||| ||||| |||| TTGGATTCAT TGGAATAGAA TAAACCCATG TCCATGGTCC CTCGAAGATA TCGAAGTATG 360 TGTTTAACAC CATTCCAATG TCTTTTTGTT GGGGAGGAAC TGAATCTTGC TAGTAGACTT 15553 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| TGTTTAACAC CATTCCAATG TCTTTTTGTT GGGGAGGAAC TGAATCTTGC CAGTAGACTT 420 ACTGCAAAAT AGATATCTGG TCGAGTATTG TTAGCAAGGT ACATTAGTGC CCCGATCGCA 15613 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACTGCAAAAC AGATATCTGG TCGAGTATTG TTAGCAAGGT ACATTAGTGC CCCGATCGCA 480 CTAAGATAAG GAGTTTCATC ACCAAGAAGC TCTTCATCAT TCTCTTGAGG TCGAAATGGA 15673 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTAAGATAAG GAGTTTCATC ACCAAGAAGC TCTTCATCAT TCTCTTGAGG TCGAAATGGA 540 TCTGTATTGA TGTCAAGCGA TCTTACCACC A 15704 |||||||||| |||||||||| |||||||||| | TCTGTATTGA TGTCAAGCGA TCTTACCACC A 571 hqPGS_C06HBa0054K13.1-12+_SGN-E201786- (15134 15704) ******************************************************************************** EST sequence 20 -strand 628 n (File: SGN-E209835-) 1 CATTGATCGC CAAGATATTG CCGTGTCTCC ACATGTAAAC AAATAGCCTG TTTGTGATCG 61 GGCTTTATGC GGATCTGATA AATACCCTGC ATCTGCGTAA CCAATCAGTT CTGATTTGGA 121 TTCATTGGAA TAGAATAAAC CCATGTCCAT GGTCCCTCGA AGATATCGAA GTATGTGTTT 181 AACACCATTC CAATGTCTTT TTGTTGGGGA GGAACTGAAT CTTGCCAGTA GACTTACTGC 241 AAAACAGATA TCTGGTCGAG TATTGTTAGC AAGGTACATT AGTGCCCCGA TCGCACTAAG 301 ATAAGGAGTT TCATCACCAA GAAGCTCTTC ATCATTCTCT TGAGGTCGAA ATGGATCTGT 361 ATTGATGTCA AGCGATCTTA CCACCATTGG AGTACTCAAT GGATGTGAGT TATCCATGTA 421 AAAACGCTTT AGTATCTTTT CTGTGTACGT TGATTGATGA ACAAGTATTC CATTTGACAA 481 ATTCTCAATC TGTAGGCCAA GACAAAATTT TGTCTTGCCG AGATCTTTCA TTTCAAATTC 541 TTTTTTCAGA CACTCAATAG CTTCTAAAAG CTCTTTACCA GTGCCAATGA TGTTCAAATC 601 ATCAACATAC ACAGCTATTA TTACAAAT Predicted gene structure (within gDNA segment 14709 to 17185): Exon 1 15319 15946 ( 628 n); cDNA 1 628 ( 628 n); score: 0.971 MATCH C06HBa0054K13.1-12+ SGN-E209835- 0.971 628 1.000 C PGS_C06HBa0054K13.1-12+_SGN-E209835- (15319 15946) Alignment (genomic DNA sequence = upper lines): CATTGATCGC CAAGATATTG TCATGTCTCC ACATGTAAAC AAATATCCTG TTTGTGATCA 15378 |||||||||| |||||||||| | ||||||| |||||||||| ||||| |||| ||||||||| CATTGATCGC CAAGATATTG CCGTGTCTCC ACATGTAAAC AAATAGCCTG TTTGTGATCG 60 AGCTTTATGA GGATCTGATA AATACCGTGC ATCTGCGTAA CCAATCAGTT CTGATTTGGA 15438 |||||||| |||||||||| |||||| ||| |||||||||| |||||||||| |||||||||| GGCTTTATGC GGATCTGATA AATACCCTGC ATCTGCGTAA CCAATCAGTT CTGATTTGGA 120 TTCATTGGAA TAGAATAAAC CCATGTGCAT GGTCCCTCGA AGATATCGAA ATATGTGTTT 15498 |||||||||| |||||||||| |||||| ||| |||||||||| |||||||||| ||||||||| TTCATTGGAA TAGAATAAAC CCATGTCCAT GGTCCCTCGA AGATATCGAA GTATGTGTTT 180 AACACCATTC CAATGTCTTT TTGTTGGGGA GGAACTGAAT CTTGCTAGTA GACTTACTGC 15558 |||||||||| |||||||||| |||||||||| |||||||||| ||||| |||| |||||||||| AACACCATTC CAATGTCTTT TTGTTGGGGA GGAACTGAAT CTTGCCAGTA GACTTACTGC 240 AAAATAGATA TCTGGTCGAG TATTGTTAGC AAGGTACATT AGTGCCCCGA TCGCACTAAG 15618 |||| ||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAACAGATA TCTGGTCGAG TATTGTTAGC AAGGTACATT AGTGCCCCGA TCGCACTAAG 300 ATAAGGAGTT TCATCACCAA GAAGCTCTTC ATCATTCTCT TGAGGTCGAA ATGGATCTGT 15678 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATAAGGAGTT TCATCACCAA GAAGCTCTTC ATCATTCTCT TGAGGTCGAA ATGGATCTGT 360 ATTGATGTCA AGCGATCTTA CCACCATTGG AGTACTCAAT GGATGTGAGT TATCCATGTA 15738 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTGATGTCA AGCGATCTTA CCACCATTGG AGTACTCAAT GGATGTGAGT TATCCATGTA 420 AAAACGCTTT AGTATCTTTT CTGTGTACGT TGATTGATGA ACAAGTATTC CATTTGACAA 15798 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAACGCTTT AGTATCTTTT CTGTGTACGT TGATTGATGA ACAAGTATTC CATTTGACAA 480 ATTCTCAATC TGTAGGCCAA GATAAAATTT TGTCTTGCCG AGATCTTTCA TTTCAAATTC 15858 |||||||||| |||||||||| || ||||||| |||||||||| |||||||||| |||||||||| ATTCTCAATC TGTAGGCCAA GACAAAATTT TGTCTTGCCG AGATCTTTCA TTTCAAATTC 540 TTTTTTCAGA CACTCAACAG CTTTTAAAAG CTCTTTATGA GTGCCAATGA TGTTCAAACC 15918 |||||||||| ||||||| || ||| |||||| ||||||| | |||||||||| |||||||| | TTTTTTCAGA CACTCAATAG CTTCTAAAAG CTCTTTACCA GTGCCAATGA TGTTCAAATC 600 ATCAACATAC ACAACTATTA TTACAAAT 15946 |||||||||| ||| |||||| |||||||| ATCAACATAC ACAGCTATTA TTACAAAT 628 hqPGS_C06HBa0054K13.1-12+_SGN-E209835- (15319 15946) ******************************************************************************** EST sequence 16 -strand 554 n (File: SGN-E299938-) 1 TCTCCACATG TAAACAAATA GCCTGTTTGT GATCGGGCTT TATGCGGGAT CTGATAAATA 61 CCCTGCATCT GCGTAACCAA TCAGTTCTGA TTTGGATTCA TTGGAATAGA ATAAACCCAT 121 GTCCATGGTC CCTCGAAGAT ATCGAAGTAT GTGTTTAACA CCATTCCAAT GTCTTTTTGT 181 TGGGGAGGAA CTGAATCTTG CCAGTAGACT TACTGCAAAA CAGATATCTG GTCGAGTGTG 241 GTTAGCAAGG TACATTAGTG CCCCGATCGC ACTAAGATAA GGAGTTTCAT CACCAAGAAG 301 CTCTTCATCA TTCTCTTGAG GTCGAAATGG ATCTGTATTG ATGTCAAGCG ATCTTACCAC 361 CATTGGGGTA CTCAATGGAT GTGAGTTATC CATGTAAAAA CGCTTTAGTA TCTTTTCTGT 421 GTACGTTGAT TGATGAACAA GTATTCCATT TGACAAATTC TCAATCTGTA GGCCAAGACA 481 AAATTTTGTC TTGCCGAGAT CTTTCATTTC AAATTCTTTT TTCAGACACT CAATAGCTTC 541 TAAACGGGCA CGAG Predicted gene structure (within gDNA segment 14319 to 16685): Exon 1 15344 15886 ( 543 n); cDNA 1 544 ( 544 n); score: 0.968 MATCH C06HBa0054K13.1-12+ SGN-E299938- 0.968 543 0.980 C PGS_C06HBa0054K13.1-12+_SGN-E299938- (15344 15886) Alignment (genomic DNA sequence = upper lines): TCTCCACATG TAAACAAATA TCCTGTTTGT GATCAAGCTT TATG-AGGAT CTGATAAATA 15402 |||||||||| |||||||||| ||||||||| |||| |||| |||| |||| |||||||||| TCTCCACATG TAAACAAATA GCCTGTTTGT GATCGGGCTT TATGCGGGAT CTGATAAATA 60 CCGTGCATCT GCGTAACCAA TCAGTTCTGA TTTGGATTCA TTGGAATAGA ATAAACCCAT 15462 || ||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCCTGCATCT GCGTAACCAA TCAGTTCTGA TTTGGATTCA TTGGAATAGA ATAAACCCAT 120 GTGCATGGTC CCTCGAAGAT ATCGAAATAT GTGTTTAACA CCATTCCAAT GTCTTTTTGT 15522 || ||||||| |||||||||| |||||| ||| |||||||||| |||||||||| |||||||||| GTCCATGGTC CCTCGAAGAT ATCGAAGTAT GTGTTTAACA CCATTCCAAT GTCTTTTTGT 180 TGGGGAGGAA CTGAATCTTG CTAGTAGACT TACTGCAAAA TAGATATCTG GTCGAGTATT 15582 |||||||||| |||||||||| | |||||||| |||||||||| ||||||||| ||||||| | TGGGGAGGAA CTGAATCTTG CCAGTAGACT TACTGCAAAA CAGATATCTG GTCGAGTGTG 240 GTTAGCAAGG TACATTAGTG CCCCGATCGC ACTAAGATAA GGAGTTTCAT CACCAAGAAG 15642 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTAGCAAGG TACATTAGTG CCCCGATCGC ACTAAGATAA GGAGTTTCAT CACCAAGAAG 300 CTCTTCATCA TTCTCTTGAG GTCGAAATGG ATCTGTATTG ATGTCAAGCG ATCTTACCAC 15702 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCTTCATCA TTCTCTTGAG GTCGAAATGG ATCTGTATTG ATGTCAAGCG ATCTTACCAC 360 CATTGGAGTA CTCAATGGAT GTGAGTTATC CATGTAAAAA CGCTTTAGTA TCTTTTCTGT 15762 |||||| ||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATTGGGGTA CTCAATGGAT GTGAGTTATC CATGTAAAAA CGCTTTAGTA TCTTTTCTGT 420 GTACGTTGAT TGATGAACAA GTATTCCATT TGACAAATTC TCAATCTGTA GGCCAAGATA 15822 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||| | GTACGTTGAT TGATGAACAA GTATTCCATT TGACAAATTC TCAATCTGTA GGCCAAGACA 480 AAATTTTGTC TTGCCGAGAT CTTTCATTTC AAATTCTTTT TTCAGACACT CAACAGCTTT 15882 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||| ||||| AAATTTTGTC TTGCCGAGAT CTTTCATTTC AAATTCTTTT TTCAGACACT CAATAGCTTC 540 TAAA 15886 |||| TAAA 544 hqPGS_C06HBa0054K13.1-12+_SGN-E299938- (15344 15886) ******************************************************************************** EST sequence 10 -strand 638 n (File: SGN-E205887-) 1 ACATGTAAAC AAATAGCCTG TTTGTGATCG GGCTTTATGC GGATCTGATA AATACCCTGC 61 ATCTGCGTAA CCAATCAGTT CTGATTTGGA TTCATTGGAA TAGAATAAAC CCATGTCCAT 121 GGTCCCTCGA AGATATCGAA GTATGTGTTT AACACCATTC CAATGTCTTT TTGTTGGGGA 181 GGAACTGAAT CTTGCCAGTA GACTTACTGC AAAACAGATA TCTGGTCGAG TGTTGTTAGC 241 AAGGTACATT AGTGCCCCGA TCGCACTAAG ATAAGGAGTT TCATCACCAA GAAGCTCTTC 301 ATCATTCTCT TGAGGTCGAA ATGGATCTGT ATTGATGTCA AGCGATCTTA CCACCATTGG 361 CGTACTCAAT GGATGTGAGT TATCCATGTA AAAACGCTTT AGTATCTTTT CTGTGTACGT 421 TGATTGATGA ACAAGTATTC CATTTGACAA ATTCTCAATC TGTAGGCCAA GACAAAATTT 481 TGTCTTGCCG AGATCTTTCA TTTCAAATTC TTTTTTCAGA CACTCAATAG CTTCTAAAAG 541 CTCTTTACCA GTGCCAATGA TGTTCAAATC ATCAACATAC ACAGCTATTA TTACAAATTC 601 AGACCCCGAC CGTTTAATAA AAATGCAGGG ACAAATCG Predicted gene structure (within gDNA segment 14379 to 17585): Exon 1 15349 15986 ( 638 n); cDNA 1 638 ( 638 n); score: 0.967 MATCH C06HBa0054K13.1-12+ SGN-E205887- 0.967 638 1.000 C PGS_C06HBa0054K13.1-12+_SGN-E205887- (15349 15986) Alignment (genomic DNA sequence = upper lines): ACATGTAAAC AAATATCCTG TTTGTGATCA AGCTTTATGA GGATCTGATA AATACCGTGC 15408 |||||||||| ||||| |||| ||||||||| |||||||| |||||||||| |||||| ||| ACATGTAAAC AAATAGCCTG TTTGTGATCG GGCTTTATGC GGATCTGATA AATACCCTGC 60 ATCTGCGTAA CCAATCAGTT CTGATTTGGA TTCATTGGAA TAGAATAAAC CCATGTGCAT 15468 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||| ||| ATCTGCGTAA CCAATCAGTT CTGATTTGGA TTCATTGGAA TAGAATAAAC CCATGTCCAT 120 GGTCCCTCGA AGATATCGAA ATATGTGTTT AACACCATTC CAATGTCTTT TTGTTGGGGA 15528 |||||||||| |||||||||| ||||||||| |||||||||| |||||||||| |||||||||| GGTCCCTCGA AGATATCGAA GTATGTGTTT AACACCATTC CAATGTCTTT TTGTTGGGGA 180 GGAACTGAAT CTTGCTAGTA GACTTACTGC AAAATAGATA TCTGGTCGAG TATTGTTAGC 15588 |||||||||| ||||| |||| |||||||||| |||| ||||| |||||||||| | |||||||| GGAACTGAAT CTTGCCAGTA GACTTACTGC AAAACAGATA TCTGGTCGAG TGTTGTTAGC 240 AAGGTACATT AGTGCCCCGA TCGCACTAAG ATAAGGAGTT TCATCACCAA GAAGCTCTTC 15648 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGGTACATT AGTGCCCCGA TCGCACTAAG ATAAGGAGTT TCATCACCAA GAAGCTCTTC 300 ATCATTCTCT TGAGGTCGAA ATGGATCTGT ATTGATGTCA AGCGATCTTA CCACCATTGG 15708 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCATTCTCT TGAGGTCGAA ATGGATCTGT ATTGATGTCA AGCGATCTTA CCACCATTGG 360 AGTACTCAAT GGATGTGAGT TATCCATGTA AAAACGCTTT AGTATCTTTT CTGTGTACGT 15768 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGTACTCAAT GGATGTGAGT TATCCATGTA AAAACGCTTT AGTATCTTTT CTGTGTACGT 420 TGATTGATGA ACAAGTATTC CATTTGACAA ATTCTCAATC TGTAGGCCAA GATAAAATTT 15828 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| || ||||||| TGATTGATGA ACAAGTATTC CATTTGACAA ATTCTCAATC TGTAGGCCAA GACAAAATTT 480 TGTCTTGCCG AGATCTTTCA TTTCAAATTC TTTTTTCAGA CACTCAACAG CTTTTAAAAG 15888 |||||||||| |||||||||| |||||||||| |||||||||| ||||||| || ||| |||||| TGTCTTGCCG AGATCTTTCA TTTCAAATTC TTTTTTCAGA CACTCAATAG CTTCTAAAAG 540 CTCTTTATGA GTGCCAATGA TGTTCAAACC ATCAACATAC ACAACTATTA TTACAAATTA 15948 ||||||| | |||||||||| |||||||| | |||||||||| ||| |||||| ||||||||| CTCTTTACCA GTGCCAATGA TGTTCAAATC ATCAACATAC ACAGCTATTA TTACAAATTC 600 AGACCCCGAC TGTTTAATGA AAATGCAGGG ACAAATCG 15986 |||||||||| ||||||| | |||||||||| |||||||| AGACCCCGAC CGTTTAATAA AAATGCAGGG ACAAATCG 638 hqPGS_C06HBa0054K13.1-12+_SGN-E205887- (15349 15986) ******************************************************************************** EST sequence 19 -strand 576 n (File: SGN-E209830-) 1 TGTGATCGGG CTTTATGCGG ATCTGATAAA TACCTTGCAT CTGCGTAACC AATCAGTTCT 61 GATTTGCATT CATTGGAATA GAATAAACCC ATGTCCATGG TCCCTCGAAG ATATCGAAGT 121 ATGTGTTTAA CACCATTCCA ATGTCTTTTT GTTGGGGAGG AACTGAATCT TGCCAGTAGA 181 CTTACTGCAA AACAGATATC TGGTCGAGTA TTGTTAGCAA GGTACATTAG TGCCCCGATC 241 GCACTAAGAT AAGGAGTTTC ATCACCAAGA AGCTCTTCAT CATTCTCTTG AGGTCGAAAT 301 GGATCTGTAT TGATGTCAAG CGATCTTACC ACCATTGGAG TACTCAATGG ATGTGAGTTA 361 TCCATGTAAA AACGCTTTAG TATCTTTTCT GTGTACGTTG ATTGATGAAC AAGTATTCCA 421 TTTGACAAAT TCTCAATCTG TAGGCCAAGA CAAAATTTTG TCTTGCCGAG ATCTTTCATT 481 TCAAATTCTT TTTTCAGACA CTCAATAGCT TCTAAAAGCT CTTTACCAGT GCCAATGATG 541 TTCAAATCAT CAACATACAC AGCTATTATT ACAAAT Predicted gene structure (within gDNA segment 14599 to 17185): Exon 1 15371 15946 ( 576 n); cDNA 1 576 ( 576 n); score: 0.972 MATCH C06HBa0054K13.1-12+ SGN-E209830- 0.972 576 1.000 C PGS_C06HBa0054K13.1-12+_SGN-E209830- (15371 15946) Alignment (genomic DNA sequence = upper lines): TGTGATCAAG CTTTATGAGG ATCTGATAAA TACCGTGCAT CTGCGTAACC AATCAGTTCT 15430 ||||||| | ||||||| || |||||||||| |||| ||||| |||||||||| |||||||||| TGTGATCGGG CTTTATGCGG ATCTGATAAA TACCTTGCAT CTGCGTAACC AATCAGTTCT 60 GATTTGGATT CATTGGAATA GAATAAACCC ATGTGCATGG TCCCTCGAAG ATATCGAAAT 15490 |||||| ||| |||||||||| |||||||||| |||| ||||| |||||||||| |||||||| | GATTTGCATT CATTGGAATA GAATAAACCC ATGTCCATGG TCCCTCGAAG ATATCGAAGT 120 ATGTGTTTAA CACCATTCCA ATGTCTTTTT GTTGGGGAGG AACTGAATCT TGCTAGTAGA 15550 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||| |||||| ATGTGTTTAA CACCATTCCA ATGTCTTTTT GTTGGGGAGG AACTGAATCT TGCCAGTAGA 180 CTTACTGCAA AATAGATATC TGGTCGAGTA TTGTTAGCAA GGTACATTAG TGCCCCGATC 15610 |||||||||| || ||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTACTGCAA AACAGATATC TGGTCGAGTA TTGTTAGCAA GGTACATTAG TGCCCCGATC 240 GCACTAAGAT AAGGAGTTTC ATCACCAAGA AGCTCTTCAT CATTCTCTTG AGGTCGAAAT 15670 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCACTAAGAT AAGGAGTTTC ATCACCAAGA AGCTCTTCAT CATTCTCTTG AGGTCGAAAT 300 GGATCTGTAT TGATGTCAAG CGATCTTACC ACCATTGGAG TACTCAATGG ATGTGAGTTA 15730 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGATCTGTAT TGATGTCAAG CGATCTTACC ACCATTGGAG TACTCAATGG ATGTGAGTTA 360 TCCATGTAAA AACGCTTTAG TATCTTTTCT GTGTACGTTG ATTGATGAAC AAGTATTCCA 15790 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCCATGTAAA AACGCTTTAG TATCTTTTCT GTGTACGTTG ATTGATGAAC AAGTATTCCA 420 TTTGACAAAT TCTCAATCTG TAGGCCAAGA TAAAATTTTG TCTTGCCGAG ATCTTTCATT 15850 |||||||||| |||||||||| |||||||||| ||||||||| |||||||||| |||||||||| TTTGACAAAT TCTCAATCTG TAGGCCAAGA CAAAATTTTG TCTTGCCGAG ATCTTTCATT 480 TCAAATTCTT TTTTCAGACA CTCAACAGCT TTTAAAAGCT CTTTATGAGT GCCAATGATG 15910 |||||||||| |||||||||| ||||| |||| | |||||||| ||||| ||| |||||||||| TCAAATTCTT TTTTCAGACA CTCAATAGCT TCTAAAAGCT CTTTACCAGT GCCAATGATG 540 TTCAAACCAT CAACATACAC AACTATTATT ACAAAT 15946 |||||| ||| |||||||||| | |||||||| |||||| TTCAAATCAT CAACATACAC AGCTATTATT ACAAAT 576 hqPGS_C06HBa0054K13.1-12+_SGN-E209830- (15371 15946) ******************************************************************************** EST sequence 11 -strand 690 n (File: SGN-E353811-) 1 TATTTGTGTA ATCAATTAGT CATGACTGGG ATTCGTTGGA ATATACCCTA TTTCATGGTC 61 TCCGAAGATA TCGAAGTATG TGTTTAACAC TATTTTCATG TCTTTTTGTT GGGGAGGAAC 121 TGAATATTGC CAGTAGACTT ACTGCAAAAT AGATATTTGG TCGAGTATTA TTAGCAAGGT 181 ACATTAGTAC CCTTACTGCA CTAAGGTAAG GAGTTTCATC ACCAAGAAGC TTTTCATCCT 241 TCTCTTGAGG TCGAAATGAA CTTGTATTGA TGTCAAGTAA TCTTACCACC ATTGGGGTAT 301 TCAATGAATG TGAGTTATCA ATGTAATATC ATTTTTATAT CTTTTCAATG TATGTTGATT 361 GATGAACAAG TATTTCATTT GACAAATTCT TAATTTGTAG GTTAAGATAA AATTTTATCT 421 TGCCGAGATC TTTCATTTTA AATTCTCTTT TCAGGCACTC AACGACTTCT AAAAAATCTT 481 TACGAGTGTC GATGATGTTC AAATTATCAA CATACACAAC TACTATAACA AATTCAGACT 541 CCAATTGTGT AATAAAAAAT GTAGGGACAA ATCGTGTCAT TTTTGTACCC TTTCTTTAAC 601 AAATATTCAC TTAGACGATT GTACCAAGCC TCCGTGACTG TTTCAATTCA TACAAAGATT 661 TTTAAAGCTT TATCGAACTA GTTCTCTCTC Predicted gene structure (within gDNA segment 13931 to 17413): Exon 1 15409 16101 ( 693 n); cDNA 2 689 ( 688 n); score: 0.853 MATCH C06HBa0054K13.1-12+ SGN-E353811- 0.853 693 1.004 C PGS_C06HBa0054K13.1-12+_SGN-E353811- (15409 16101) Alignment (genomic DNA sequence = upper lines): ATCTGCGTAA CCAATCAGTT CTGATTTGGA TTCATTGGAA TAGAATAAAC CCATGTGCAT 15468 || || |||| |||| ||| ||| | ||| ||| |||||| | ||| | | || | ||| ATTTGTGTAA TCAATTAGTC ATGACTGGGA TTCGTTGGAA T---ATA-CC CTAT-TTCAT 56 GGTCCCTCGA AGATATCGAA ATATGTGTTT AACACCATTC CAATGTCTTT TTGTTGGGGA 15528 |||| | ||| |||||||||| ||||||||| ||||| ||| |||||||| |||||||||| GGTCTC-CGA AGATATCGAA GTATGTGTTT AACACTATTT TCATGTCTTT TTGTTGGGGA 115 GGAACTGAAT CTTGCTAGTA GACTTACTGC AAAATAGATA TCTGGTCGAG TATTGTTAGC 15588 |||||||||| |||| |||| |||||||||| |||||||||| | |||||||| |||| ||||| GGAACTGAAT ATTGCCAGTA GACTTACTGC AAAATAGATA TTTGGTCGAG TATTATTAGC 175 AAGGTACATT AGTGCCCCGA TCGCACTAAG ATAAGGAGTT TCATCACCAA GAAGCTCTTC 15648 |||||||||| ||| ||| | |||||||| ||||||||| |||||||||| |||||| ||| AAGGTACATT AGTACCCTTA CTGCACTAAG GTAAGGAGTT TCATCACCAA GAAGCTTTTC 235 ATCATTCTCT TGAGGTCGAA ATGGATCTGT ATTGATGTCA AGCGATCTTA CCACCATTGG 15708 ||| |||||| |||||||||| ||| | ||| |||||||||| || |||||| |||||||||| ATCCTTCTCT TGAGGTCGAA ATGAACTTGT ATTGATGTCA AGTAATCTTA CCACCATTGG 295 AGTACTCAAT GGATGTGAGT TATCCATGTA AAAACGCTTT AGTATCTTTT CTGTGTACGT 15768 ||| ||||| | |||||||| |||| ||||| | | | ||| |||||||| | |||| || GGTATTCAAT GAATGTGAGT TATCAATGTA ATATCATTTT TATATCTTTT CAATGTATGT 355 TGATTGATGA ACAAGTATTC CATTTGACAA ATTCTCAATC TGTAGGCCAA GATAAAATTT 15828 |||||||||| ||||||||| |||||||||| ||||| ||| |||||| || |||||||||| TGATTGATGA ACAAGTATTT CATTTGACAA ATTCTTAATT TGTAGGTTAA GATAAAATTT 415 TGTCTTGCCG AGATCTTTCA TTTCAAATTC TTTTTTCAGA CACTCAACAG CTTTTAAAAG 15888 | |||||||| |||||||||| ||| |||||| | ||||||| |||||||| ||| ||||| TATCTTGCCG AGATCTTTCA TTTTAAATTC TCTTTTCAGG CACTCAACGA CTTCTAAAAA 475 CTCTTTATGA GTGCCAATGA TGTTCAAACC ATCAACATAC ACAACTATTA TTACAAATTA 15948 |||||| || ||| | |||| |||||||| |||||||||| ||||||| || | ||||||| ATCTTTACGA GTGTCGATGA TGTTCAAATT ATCAACATAC ACAACTACTA TAACAAATTC 535 AGACCCCGAC TGTTTAAT-G AAAATGCAGG GACAAATCGG GTCATTTTTG TACCCTTTCT 16007 |||| || | ||| |||| |||||| ||| ||||||||| |||||||||| |||||||||| AGACTCCAAT TGTGTAATAA AAAATGTAGG GACAAATCGT GTCATTTTTG TACCCTTTCT 595 TTAACAAATA TTCACTCAGG CGATTGTACC ACATCCTTCC TGATTGTTTC AATCCATACA 16067 |||||||||| |||||| || |||||||||| | | ||| | ||| |||||| ||| |||||| TTAACAAATA TTCACTTAGA CGATTGTACC A-AGCCTCCG TGACTGTTTC AATTCATACA 654 GAGATTTCTG AAGTTTTATT GAACAAGTT- TCTCT 16101 |||||| | ||| ||||| |||| |||| ||||| AAGATTTTTA AAGCTTTATC GAACTAGTTC TCTCT 689 hqPGS_C06HBa0054K13.1-12+_SGN-E353811- (15409 16101) ******************************************************************************** EST sequence 13 -strand 711 n (File: SGN-E331947-) 1 CAAATTCTTT TTTCAGACAC TCAATAGCTT CTAAAAGCTC TTTACCAGTG CCAATGATGT 61 TCAAATCATC AACATACACA GCTATTATTA CAAATTCAGA CCCCGACCGT TTAATAAAAA 121 TGCAGGGACA AATCGGGTCA TTTTTGTACC CTTTCTTTAA CAAATATTCA CTCAGACGAT 181 TGTACCACAT CCTTCCTGAT TGTTTCAATC CATACAGAGA TTTCTGAAGT TTTATTGAAC 241 AAGTTTCTCT TGAATCTTTG TATGCTTCAG GAACTTTGAA TGCTTCAGGA ATTTTCATGA 301 AAATGTTGTG GTCCAATGAG CCATATAGAT AGGCTGTGAC AACGTCCATT AGACGCATTT 361 CAAGTTTTTC ATGAACTGCC AAATTTATGA GATATCTGAA GGTGATTGCA TCTACCACTG 421 GAGAATATGT CTCCATATAA TCAATGCCAG GTCTTTGAGA AAAACCTTGA GCAACGAGTC 481 GGGCCTTATA TCTCATGACT TCATCTTTCT CATTTCTTTT CCGTACAAAA ACCCATTTGT 541 ACCCCACTGG CTTGATACCT TCAGGTGTTC GGATTATCGG TCCAAAAACT TCACGTATTT 601 CTAGTGAAGC CAATTCAGCT TGAATTGCAT CCTTCCATTT TGGCCAATCA TTTCTCTGTC 661 TACATTCGTG AACAGATTTT GGCTCAAAAT CTTCATATTG TTGCATTATT T Predicted gene structure (within gDNA segment 14198 to 17297): Exon 1 15852 16562 ( 711 n); cDNA 1 711 ( 711 n); score: 0.965 MATCH C06HBa0054K13.1-12+ SGN-E331947- 0.965 711 1.000 C PGS_C06HBa0054K13.1-12+_SGN-E331947- (15852 16562) Alignment (genomic DNA sequence = upper lines): CAAATTCTTT TTTCAGACAC TCAACAGCTT TTAAAAGCTC TTTATGAGTG CCAATGATGT 15911 |||||||||| |||||||||| |||| ||||| ||||||||| |||| |||| |||||||||| CAAATTCTTT TTTCAGACAC TCAATAGCTT CTAAAAGCTC TTTACCAGTG CCAATGATGT 60 TCAAACCATC AACATACACA ACTATTATTA CAAATTAAGA CCCCGACTGT TTAATGAAAA 15971 ||||| |||| |||||||||| ||||||||| |||||| ||| ||||||| || ||||| |||| TCAAATCATC AACATACACA GCTATTATTA CAAATTCAGA CCCCGACCGT TTAATAAAAA 120 TGCAGGGACA AATCGGGTCA TTTTTGTACC CTTTCTTTAA CAAATATTCA CTCAGGCGAT 16031 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||| |||| TGCAGGGACA AATCGGGTCA TTTTTGTACC CTTTCTTTAA CAAATATTCA CTCAGACGAT 180 TGTACCACAT CCTTCCTGAT TGTTTCAATC CATACAGAGA TTTCTGAAGT TTTATTGAAC 16091 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTACCACAT CCTTCCTGAT TGTTTCAATC CATACAGAGA TTTCTGAAGT TTTATTGAAC 240 AAGTTTCTCT TGAATCTTTG TATGCTTCAG GCACTTTGAA TGCTTTAGGA ATTTTCATGA 16151 |||||||||| |||||||||| |||||||||| | |||||||| ||||| |||| |||||||||| AAGTTTCTCT TGAATCTTTG TATGCTTCAG GAACTTTGAA TGCTTCAGGA ATTTTCATGA 300 AAATGTTGTG GTCCAATGAG CCATATAGAT AGGCTGTGAC AACGTCGATT AGACGCATTT 16211 |||||||||| |||||||||| |||||||||| |||||||||| |||||| ||| |||||||||| AAATGTTGTG GTCCAATGAG CCATATAGAT AGGCTGTGAC AACGTCCATT AGACGCATTT 360 CAAGTTTTTC ATGAACTACC AGATTTATGA GATATCTGAA GGTGATTGCA TCTACCACTG 16271 |||||||||| ||||||| || | |||||||| |||||||||| |||||||||| |||||||||| CAAGTTTTTC ATGAACTGCC AAATTTATGA GATATCTGAA GGTGATTGCA TCTACCACTG 420 GAGAATATGT CTCCATATAA TAAATGTTAG GTCTTTGAGA AAAACCTTGA GCAACGAGTC 16331 |||||||||| |||||||||| | |||| || |||||||||| |||||||||| |||||||||| GAGAATATGT CTCCATATAA TCAATGCCAG GTCTTTGAGA AAAACCTTGA GCAACGAGTC 480 GGGCCTTATA TCTCATGACT TCACCTTTCT CATTTCTTTT TCGTACAAAA ACCCATTTGT 16391 |||||||||| |||||||||| ||| |||||| |||||||||| ||||||||| |||||||||| GGGCCTTATA TCTCATGACT TCATCTTTCT CATTTCTTTT CCGTACAAAA ACCCATTTGT 540 ACCCCACTGG CTTGATACCT TCAGGTGTTT GGATTATCGG TCCAAAAACT TCACATTTTT 16451 |||||||||| |||||||||| ||||||||| |||||||||| |||||||||| |||| | ||| ACCCCACTGG CTTGATACCT TCAGGTGTTC GGATTATCGG TCCAAAAACT TCACGTATTT 600 CTAGTGAAGA CAATTCAGCT TGAATTGCAT CCTTCCATTT TGGCCAATCA TTTCTCTGTC 16511 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTAGTGAAGC CAATTCAGCT TGAATTGCAT CCTTCCATTT TGGCCAATCA TTTCTCTGTC 660 TACATTCGTG AACAGATTTT GGCTCAAAAT CTTCATCTTG TTGCATTATT T 16562 |||||||||| |||||||||| |||||||||| |||||| ||| |||||||||| | TACATTCGTG AACAGATTTT GGCTCAAAAT CTTCATATTG TTGCATTATT T 711 hqPGS_C06HBa0054K13.1-12+_SGN-E331947- (15852 16562) ******************************************************************************** EST sequence 12 +strand 572 n (File: SGN-E206250+) 1 ACGAATTTGC TACTTGCATA GAAATCTCCA ATTGTCAGTT GGATTCAAGA TGAGTAATGG 61 AGATGTATAC CTTTTTCATA GTGCTACTAC ACATACAATA TTAAAAGAAA AGAAAAGAAA 121 TACTTTTCTA ATTTGGTTAT GAAAATGACA TATGTCAACA CAATATCAGG TAGTACAAAA 181 TTAATTGAGA GCTCTGGAAG AGCGACCTTA TTACAACCTG GAGAGACAAT ATTGGACATT 241 TGTAATGCAT TATACCGTAG TAAGTCACAA AGAAACTTAT TAAGTTTCAG AGTAATTCGC 301 CAAAATGGCT ATCACGTTGA GACGACTAAT GAAGGAAAGG ATGAATGCCT TTACATTACT 361 ACAATTAATG TACAGAAGAA AATTGTGCAT GAAAAATTAC GTGCATTTTC TTCTAGGTTC 421 TACTATACAA GTGTAAGTAC AGTTGAATCA CATGTCGTAG TAAACAAAAG GTTTACTAAT 481 TTTAATGATT CTATTATTTG GTATGACCGG TTGGGCCATC CCGGATTTAA TATGATGCAC 541 AGAATCATTG AGAATTCACG TGGGCACACC TT Predicted gene structure (within gDNA segment 19318 to 16525): Exon 1 18418 17873 ( 546 n); cDNA 22 572 ( 551 n); score: 0.906 MATCH C06HBa0054K13.1-12- SGN-E206250+ 0.906 546 0.955 C PGS_C06HBa0054K13.1-12-_SGN-E206250+ (18418 17873) Alignment (genomic DNA sequence = upper lines): AAATCCCCAG TTGTCAGTTG GATTCAAGAT GAGTAATGGA GATGTATGCC TTCTTGATAG 18359 ||||| ||| |||||||||| |||||||||| |||||||||| ||||||| || || || |||| AAATCTCCAA TTGTCAGTTG GATTCAAGAT GAGTAATGGA GATGTATACC TTTTTCATAG 81 TGCTACAACG CATACAATAT TAAAAGAAAA G---A-A-AT ACTTTTCTAA TTTGGTTATG 18304 |||||| || |||||||||| |||||||||| | | | || |||||||||| |||||||||| TGCTACTACA CATACAATAT TAAAAGAAAA GAAAAGAAAT ACTTTTCTAA TTTGGTTATG 141 AAAATGGCAT ATGTCAACAC AATATCAGGT AGTACAAAAT TAATTGAGGG CTCTGGAAGA 18244 |||||| ||| |||||||||| |||||||||| |||||||||| |||||||| | |||||||||| AAAATGACAT ATGTCAACAC AATATCAGGT AGTACAAAAT TAATTGAGAG CTCTGGAAGA 201 GCGACCTTAT TACTACCTGG AGGGACAATA TTAAGCATTG ATAATGCATT ATATTGTAGT 18184 |||||||||| ||| |||||| || ||||||| || |||| ||||||||| ||| ||||| GCGACCTTAT TACAACCTGG AGAGACAATA TTGGACATTT GTAATGCATT ATACCGTAGT 261 AAGTCTCAAA GAAACTTATT AAGTTTCAAA GTTATTCGCC AAAATGGCTA TCATGTTGAG 18124 ||||| |||| |||||||||| |||||||| | || ||||||| |||||||||| ||| |||||| AAGTCACAAA GAAACTTATT AAGTTTCAGA GTAATTCGCC AAAATGGCTA TCACGTTGAG 321 ACGACTAATG AAGGAAAGGT TGAATACCTT TACATTACTA CAATTAATGT AGAGAAGAAA 18064 |||||||||| ||||||||| ||||| |||| |||||||||| |||||||||| | |||||||| ACGACTAATG AAGGAAAGGA TGAATGCCTT TACATTACTA CAATTAATGT ACAGAAGAAA 381 ATTGTGCATG AAAAATCACC TGCATTTTCT TCTGGGTTGT ACTATACAAG TATAAGTACA 18004 |||||||||| |||||| || |||||||||| ||| |||| | |||||||||| | |||||||| ATTGTGCATG AAAAATTACG TGCATTTTCT TCTAGGTTCT ACTATACAAG TGTAAGTACA 441 GTCGAATCAC ATGCCGTAGT AAACAAAAGG TTTACTAATT TTAATGATTT TATTATTTGG 17944 || ||||||| ||| |||||| |||||||||| |||||||||| ||||||||| |||||||||| GTTGAATCAC ATGTCGTAGT AAACAAAAGG TTTACTAATT TTAATGATTC TATTATTTGG 501 CATGACCAGT TGGGCCATCC CAGATTTAAT ATGATGCGCA AAATCATTGA GAATTCACAT 17884 |||||| || |||||||||| | |||||||| ||||||| || ||||||||| |||||||| | TATGACCGGT TGGGCCATCC CGGATTTAAT ATGATGCACA GAATCATTGA GAATTCACGT 561 GGGCACACCT T 17873 |||||||||| | GGGCACACCT T 572 hqPGS_C06HBa0054K13.1-12-_SGN-E206250+ (18418 17873) ******************************************************************************** EST sequence 14 +strand 367 n (File: SGN-E332350+) 1 TTTTCTAATT TGGTTATGAA AATGGCATAT GTCAACACAA AATTAATTGA GGGCTCTGGA 61 AGAGCGACCT TATTACTACC TGGAGGGACA ATATTAAGCA TTGATAATGC ATTATATTGT 121 AGTAAGTCTC AAAGAAACTT ATTAAGTTTC AAAGTTATTC GCCAAAATGG CTATCATGTT 181 GAGACGGCTA ATGAAGGAAA GGTTGAATAC CTTTACATTA CTACAATTAA TGTTGAGAAG 241 AAAATTGTGC ATGAAAAATT ACCTGCATTT TCTTCTGGGT TGTACTATAC AAGTATAAGT 301 ACAGTTGAAT CACATGCCGT AGTAAACAAA AGGTTTACTA ATTTTAATGA TTTTATCATT 361 TGGCATG Predicted gene structure (within gDNA segment 18921 to 17231): Exon 1 18308 17940 ( 369 n); cDNA 1 367 ( 367 n); score: 0.935 MATCH C06HBa0054K13.1-12- SGN-E332350+ 0.935 369 1.005 C PGS_C06HBa0054K13.1-12-_SGN-E332350+ (18308 17940) Alignment (genomic DNA sequence = upper lines): TTATGAAAAT GGCATATGTC AACACAATAT CAGGTAGTAC AAAATTAATT GAGGGCTCTG 18249 || | || | | |||| || |||| | | || |||||||||| |||||||||| TTTTCTAATT TGGTTATGAA AATGGCATAT --GTCAACAC AAAATTAATT GAGGGCTCTG 58 GAAGAGCGAC CTTATTACTA CCTGGAGGGA CAATATTAAG CATTGATAAT GCATTATATT 18189 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAGAGCGAC CTTATTACTA CCTGGAGGGA CAATATTAAG CATTGATAAT GCATTATATT 118 GTAGTAAGTC TCAAAGAAAC TTATTAAGTT TCAAAGTTAT TCGCCAAAAT GGCTATCATG 18129 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTAGTAAGTC TCAAAGAAAC TTATTAAGTT TCAAAGTTAT TCGCCAAAAT GGCTATCATG 178 TTGAGACGAC TAATGAAGGA AAGGTTGAAT ACCTTTACAT TACTACAATT AATGTAGAGA 18069 |||||||| | |||||||||| |||||||||| |||||||||| |||||||||| ||||| |||| TTGAGACGGC TAATGAAGGA AAGGTTGAAT ACCTTTACAT TACTACAATT AATGTTGAGA 238 AGAAAATTGT GCATGAAAAA TCACCTGCAT TTTCTTCTGG GTTGTACTAT ACAAGTATAA 18009 |||||||||| |||||||||| | |||||||| |||||||||| |||||||||| |||||||||| AGAAAATTGT GCATGAAAAA TTACCTGCAT TTTCTTCTGG GTTGTACTAT ACAAGTATAA 298 GTACAGTCGA ATCACATGCC GTAGTAAACA AAAGGTTTAC TAATTTTAAT GATTTTATTA 17949 ||||||| || |||||||||| |||||||||| |||||||||| |||||||||| |||||||| | GTACAGTTGA ATCACATGCC GTAGTAAACA AAAGGTTTAC TAATTTTAAT GATTTTATCA 358 TTTGGCATG 17940 ||||||||| TTTGGCATG 367 hqPGS_C06HBa0054K13.1-12-_SGN-E332350+ (18308 17940) ******************************************************************************** EST sequence 9 +strand 858 n (File: SGN-E540411+) 1 TTTTTTTTTT CTCATAAACA TAAAGTACAC TAATATTATT ATTATAAAAT TCTCCAGTCT 61 TATACAAAAC AACATATGAC TTCACTTGAA CTATAATTAA AGAACAATAA AGGGATAATG 121 CACAAGTACC CCCTCAACCT ATGCCCGAAA TTCCAGAGAC ACACTTATAC TATACTAAGG 181 TCCTATTACC CCCCTGAACT TATTTTATAA GTAATTTTCT ACCCCTTTTT AGCCTACGTG 241 GCACTAGTTT AAAAAAAAAG TCAACAACCA TTGGGCCCAC AAGATAGTGC CACGTAGGTC 301 TAAAAGGGGT AAAAAATTAT TAATAAATAA GTTCAGGGGG TAATAAGATC TTAGTATGGT 361 ATAAGTGTAT CTCTGAGATT TTGGACATAG GCTAAGGGGG TACTTGGACA TTATCCCAAC 421 AATAAATAAA GGATATAACA TGATTCAAAA GACAACACGT GATAACCACT TCTACAACTT 481 GTGCATGATC AATTGAGCAC CATATTGAGG TTGAAGCAAC AATGGGTGAG GAGCATGAGC 541 ATAAGATGGA GAGAGTTCAA ATGCATAATG TTTTAGAATC ATGACCATTG CCATTTTTGC 601 CTCTAACATA GCAAAATTTT GCCCAATACA TATTCTTGGA CCCCAACTAA ATGGAAAAAA 661 TACAACTTGT CCTTTTGTTG CTTTTGATAT TCCTTCACTA AATCTCTCTG GCATAAACTC 721 CATTGCATCA TCTCCCCATA TTTCAGTATC ATGATGCACT AACATTGTTG CCAATATGAG 781 TTGGACCCCA GAGGGTAACA CAAATCCCCT AACTTTGTTT CTGTATTCAC CATGCGATTA 841 ATCGCGTATA CTGATGTA Predicted gene structure (within gDNA segment 23310 to 14459): Exon 1 21227 20908 ( 320 n); cDNA 106 424 ( 319 n); score: 0.902 Intron 1 20907 19235 (1673 n); Pd: 0.000 (s: 0.82), Pa: 0.000 (s: 0) Exon 2 19234 19205 ( 30 n); cDNA 425 453 ( 29 n); score: 0.767 Intron 2 19204 15411 (3794 n); Pd: 0.000 (s: 0), Pa: 0.733 (s: 0) Exon 3 15410 15404 ( 7 n); cDNA 454 459 ( 6 n); score: 0.714 Intron 3 15403 15309 ( 95 n); Pd: 0.874 (s: 0), Pa: 0.000 (s: 0.66) Exon 4 15308 15265 ( 44 n); cDNA 460 503 ( 44 n); score: 0.659 PPA cDNA 12 1 MATCH C06HBa0054K13.1-12- SGN-E540411+ 0.902 401 0.467 C PGS_C06HBa0054K13.1-12-_SGN-E540411+ (21227 20908,19234 19205,15410 15404,15308 15265) Alignment (genomic DNA sequence = upper lines): AAAAATGGGA TAATGCACAA GTA-CCCCTC AATCTATGCC CGAAATTTCA GAGACACACT 21169 || || |||| |||||||||| ||| |||||| || ||||||| ||||||| || |||||||||| AATAAAGGGA TAATGCACAA GTACCCCCTC AACCTATGCC CGAAATTCCA GAGACACACT 165 TATACTATAC TAAGGTCCTA TTACCTCCCT GAACTTATTT TATAAGTAAT TTTCTACCCC 21109 |||||||||| |||||||||| ||||| |||| |||||||||| |||||||||| |||||||||| TATACTATAC TAAGGTCCTA TTACCCCCCT GAACTTATTT TATAAGTAAT TTTCTACCCC 225 TTTTTAGCCT ACGTGGCACT GGTTTGGAAC AAAAAGTCAA CCATCGTTGG ACCCACAAGA 21049 |||||||||| |||||||||| |||| || |||||||||| | | | |||| ||||||||| TTTTTAGCCT ACGTGGCACT AGTTT-AAAA AAAAAGTCAA CAACCATTGG GCCCACAAGA 284 TAGTGCCACG TAGGTCGAAA AGGGGTAAAA AATTATTAAT AAAATAATTT CAGGGGGTAA 20989 |||||||||| |||||| ||| |||||||||| |||||||||| |||||| || |||||||||| TAGTGCCACG TAGGTCTAAA AGGGGTAAAA AATTATTAAT -AAATAAGTT CAGGGGGTAA 343 TAGGACCTTA GTATAGTATA AGTGTGTCTC TGAGATTTCG GGTATAGGTT GAGGAGGTAC 20929 || || |||| |||| ||||| ||||| |||| |||||||| | | ||||| | ||| ||||| TAAGATCTTA GTATGGTATA AGTGTATCTC TGAGATTTTG GACATAGGCT AAGGGGGTAC 403 TTGGACATTA TCCCTATAAA AATTAAGAAA GAGTTTACCA TGAATATATT CAAATTATAA 20869 |||||||||| |||| | || | TTGGACATTA TCCCAACAAT A......... .......... .......... .......... 424 AAAATTGTGG CCGAGTACCA TTATCTCCGA ATCTATGCCT AGAAACACAT TTATACTATA 20809 .......... .......... .......... .......... .......... .......... 424 TCAAGGTCTT ATTACCCTCT AAACTTATTT TATAAATGAT TTTCAATTTT TTTTTGGCCT 20749 .......... .......... .......... .......... .......... .......... 424 ACGTGGTACT ATCCTGTGGG TCAAACGCGT GTTGACATTT TATTTTAAGC TAATACAACG 20689 .......... .......... .......... .......... .......... .......... 424 TAGGCTGAAA AAAGAATAGA AAATTATTTA TAAAATAAGT TCAGGAGGTA ATAAAATCAT 20629 .......... .......... .......... .......... .......... .......... 424 CTTAATATAG TATTCAATAT ATCTTTGGAA TTTCAAAAAT AGATTGAACG TACTCGCGCA 20569 .......... .......... .......... .......... .......... .......... 424 TTTTACCAAA AAAACTAATC AAAGAACACC AATATTGTTC TAATTGGTGT ACAGATTACA 20509 .......... .......... .......... .......... .......... .......... 424 TTAATATCGG GGAATAAAAG CATCAATGAT GGCATTAAAA CATACAACAC CTCAACATTT 20449 .......... .......... .......... .......... .......... .......... 424 AGTAGACCTA CGATGTTTAT TTATTTCATC AACTTAAATT GACATACTTA ATTTAATTAG 20389 .......... .......... .......... .......... .......... .......... 424 ATTTTATTAC TTTAATTATG CTATAGATTA GTCTTTTGCT TTTTTGCTCT TCCTCTCAAA 20329 .......... .......... .......... .......... .......... .......... 424 TTTAAATTTT CTCATTTAGT TATTTCTCAA TACATGTGGA ATGGACAAAT AATTTAAATA 20269 .......... .......... .......... .......... .......... .......... 424 AATGAATTTT AGTTGGGAAC ATCAAAGGTT GCCTAGTTTT TTTTTAGTTT TTTTTTTTTG 20209 .......... .......... .......... .......... .......... .......... 424 CACAATAAGA ATAACAATAA TAATAAAAAT GTTAATTGAG TAGTTATTTC CTAATTTAAT 20149 .......... .......... .......... .......... .......... .......... 424 TTGTCATTTT TAAGCAATTA ATATTTTGTT AAAAGATTCA AAACTTCTAT TTTAATTGGC 20089 .......... .......... .......... .......... .......... .......... 424 TGAAATATAA TAAATATGCA TCTTAAGTTG AACTATAGAC ATATATCATA ATTTTTTGAG 20029 .......... .......... .......... .......... .......... .......... 424 TAAAAGATAT ATTCACTCTA AATCGCAAAA TTAAAAAATT GTTGTAAATC CATTGTATAT 19969 .......... .......... .......... .......... .......... .......... 424 GTAGATGATC CACTAGAGTT ATCCAACAAT TAATTGGATT CATGTATTAG TGTTTCCAAT 19909 .......... .......... .......... .......... .......... .......... 424 GTGATAAGAT ATCAAGGTGA TATGAACCTT GATGATAACT ATGTAAAATT TCAAGGTGAC 19849 .......... .......... .......... .......... .......... .......... 424 CTTTGACTAT GATATCTCAA CACTATAAAT AGAGATATCA TTCACCATTG TATGATATAC 19789 .......... .......... .......... .......... .......... .......... 424 TTGAATAAGA AAATTATCTC CTCTATCTTA TACTTCTTGT CTTTTTCATC TTATATTCTG 19729 .......... .......... .......... .......... .......... .......... 424 AGCTTTCTTT ACAACACGTT ATCAGCACGA AATTGCTACT TGCAAAGGTA CTATATAAAT 19669 .......... .......... .......... .......... .......... .......... 424 ATTTTTATTT AATTCACATA TTCTCTCATA ATTTTCATTA TGTCGAATTT ATCCAAACTT 19609 .......... .......... .......... .......... .......... .......... 424 GAGTTTGTGG CATTAGATAT TTCTGGAAAG AATTATCTTT CATGGGTACT CGATGCTGAG 19549 .......... .......... .......... .......... .......... .......... 424 ATTCACTTGG CTGCTAAAGG TCTTGATGCC ACTATTACTC AGGGAAAAGA AGCATCCAGT 19489 .......... .......... .......... .......... .......... .......... 424 CAAGATAAGG CGAAGGCTAT GATTTTCCTT CGTTATCATC TTGATGAGGG CCTGAAGATT 19429 .......... .......... .......... .......... .......... .......... 424 GAATATCTGA CGGTGAAATA TCCACTTGAA TAGTGGACTG ATTTAAAGGG GAGATATGAC 19369 .......... .......... .......... .......... .......... .......... 424 CACCGAAAGG CAACAGTGTT GCCAAGAGCT CGTTATGAGT GGATGCATTT ATGGTTTCAA 19309 .......... .......... .......... .......... .......... .......... 424 GATTTTAAGA CCGTAATTGA ATACAACAGA GTTGTATTCA GGATAACCTC CCAGTTGAAA 19249 .......... .......... .......... .......... .......... .......... 424 TTATGTGGGG AGACTATAAA AGATGAGAAC ATGTTGGAAA AGACACTTAC TACTTTTCAT 19189 ||||| ||| | ||| ||| | ||| |||| .......... ....AATAAA GGAT-ATAAC ATGATTCAAA AGAC...... .......... 453 GCCTCGAATG TGATATTGCA GTAGCAATAT CGTGAAAAGG GTTTTCAGAA ATATTCTGAA 19129 .......... .......... .......... .......... .......... .......... 453 CTAATCTCAT GTCTTTTGGT GGCTGAACAA CATAATGCTC TTTTAATGAA AAATCATGAA 19069 .......... .......... .......... .......... .......... .......... 453 GCTCGTCCCA CTGGAGCTGC TCCATTACCG GAGGCAAATG TGGTGGAAGC ACGTGATCAA 19009 .......... .......... .......... .......... .......... .......... 453 TCTGAAGTAA AAAGAGATGA TCATCGGGGA TATAATAATG TATGGGGACG TGGCAAAGAT 18949 .......... .......... .......... .......... .......... .......... 453 AAAAGACGAT ACACTAATCG TCAAGATGGT GATCATAATA AAAGGGAGAA CAACATGAGT 18889 .......... .......... .......... .......... .......... .......... 453 TCTCAAAATA ACCCCTCAAA AAGTAATTGT CGTCATTGTG GCATGAAAGG CCATTGGAAG 18829 .......... .......... .......... .......... .......... .......... 453 AATGAATGTC GCACACATGA ACATTTTGTA AGGCTCTATC AAAATTCCTT CAAAAAGAAA 18769 .......... .......... .......... .......... .......... .......... 453 GGAAATAAAA GTGGTGCTTC CTCTTCCAAT GCTCGAGCTG AGTCACATCT GACTCTTAAA 18709 .......... .......... .......... .......... .......... .......... 453 GATGGTGATA AGCCGGGAAC ATCTCAGAAA TATGATAAAG ATGTTGAAGA AAATTTGGCT 18649 .......... .......... .......... .......... .......... .......... 453 TTAAGGGATG ATGTTTTTGA TGGCCTTGGT GACATTACTC ATATGGAAGT TGATGACTTC 18589 .......... .......... .......... .......... .......... .......... 453 TTTGGAGATC GAAACTAATG TTTGATCTTT TAGCTGGGGA ATGAAATTTG TTAATATTTT 18529 .......... .......... .......... .......... .......... .......... 453 ACTTATGTAT TTTTAATTAT TATGTTATTC ATGTTGAAGT ATTTAAATTT CAGTTGTTAA 18469 .......... .......... .......... .......... .......... .......... 453 TTTTGTTTCT TCCTCCTTTT GATGTATTTT ATTTTAATGA AAATTAATAG AAATCCCCAG 18409 .......... .......... .......... .......... .......... .......... 453 TTGTCAGTTG GATTCAAGAT GAGTAATGGA GATGTATGCC TTCTTGATAG TGCTACAACG 18349 .......... .......... .......... .......... .......... .......... 453 CATACAATAT TAAAAGAAAA GAAATACTTT TCTAATTTGG TTATGAAAAT GGCATATGTC 18289 .......... .......... .......... .......... .......... .......... 453 AACACAATAT CAGGTAGTAC AAAATTAATT GAGGGCTCTG GAAGAGCGAC CTTATTACTA 18229 .......... .......... .......... .......... .......... .......... 453 CCTGGAGGGA CAATATTAAG CATTGATAAT GCATTATATT GTAGTAAGTC TCAAAGAAAC 18169 .......... .......... .......... .......... .......... .......... 453 TTATTAAGTT TCAAAGTTAT TCGCCAAAAT GGCTATCATG TTGAGACGAC TAATGAAGGA 18109 .......... .......... .......... .......... .......... .......... 453 AAGGTTGAAT ACCTTTACAT TACTACAATT AATGTAGAGA AGAAAATTGT GCATGAAAAA 18049 .......... .......... .......... .......... .......... .......... 453 TCACCTGCAT TTTCTTCTGG GTTGTACTAT ACAAGTATAA GTACAGTCGA ATCACATGCC 17989 .......... .......... .......... .......... .......... .......... 453 GTAGTAAACA AAAGGTTTAC TAATTTTAAT GATTTTATTA TTTGGCATGA CCAGTTGGGC 17929 .......... .......... .......... .......... .......... .......... 453 CATCCCAGAT TTAATATGAT GCGCAAAATC ATTGAGAATT CACATGGGCA CACCTTAAAG 17869 .......... .......... .......... .......... .......... .......... 453 AGCCCAAATA TCCTTCAATC AAAGGAATTC TCTTGTGCTG CTTGTTCTCA AGGAAAGTTG 17809 .......... .......... .......... .......... .......... .......... 453 ATCATTAAAC CATCAACAGT TAAAGTTGGA ATTGAATCCC CTGCGTTTCT GGAACGTATA 17749 .......... .......... .......... .......... .......... .......... 453 CAGGATGATA TATGTGGACC AATTCAACCT GCATGTGGAC CATTTAAATA TTATATGGTC 17689 .......... .......... .......... .......... .......... .......... 453 TTGATAGATG TTTCTACAAG ATGGTCACAT GTGTGTTTAT TATCAACTCG CAACATGGCT 17629 .......... .......... .......... .......... .......... .......... 453 TTTGCGAGAT TGCTGGCTCA AATAATAAGA TTGAAAGCAC AATTTCCAGA CTATACAATA 17569 .......... .......... .......... .......... .......... .......... 453 AAGACAATCC GTCTAGATAA TGATGGTGAG TTTACATCTC AAGCATTTAA TGATTATTGT 17509 .......... .......... .......... .......... .......... .......... 453 ATGTCTACTG GTATAACAGT TGAACATCCA GTTGCTCATG TTCACACTCA AAACGGTCTA 17449 .......... .......... .......... .......... .......... .......... 453 GCAGAATCAT TGATTAAACG TCTACAATTG ATAGTTAGAC CATTACTAGT GAGAACAAAG 17389 .......... .......... .......... .......... .......... .......... 453 TTATCTGTGT CGATGTGGGG GCATGTTATT TTGCATGCAG CAGCACTTGT GCGCATAAGG 17329 .......... .......... .......... .......... .......... .......... 453 CCGACCAATT ATCATGAATT CTCCCCATTA CAATTAACTT TTGGTCAAGA ACCAAACATT 17269 .......... .......... .......... .......... .......... .......... 453 TCCCATCTCA GAGTTTTTGA ATGTGCGGTG TATGTCCCAA TTGCTCCACC ACAATGCACA 17209 .......... .......... .......... .......... .......... .......... 453 AAGATGGGGC CCCAAAGAAG GTTGGCGATA TATGTTGGGT ATGAATCTCC TTCAATCATA 17149 .......... .......... .......... .......... .......... .......... 453 AAATATTTGG AGCCTATGAC TGGAGATTTA TTTAAGGCAA GATTTGCTGA TTGTCATTTT 17089 .......... .......... .......... .......... .......... .......... 453 GATGAATCAG TATACCCAAC ATTAGGGGGA GAACATAAGT CATTGGGAAA AGAGATAGAT 17029 .......... .......... .......... .......... .......... .......... 453 TGGAATTCAT CATCTCTATC TCATCTGGAT CCTCGAACAA ACCAATGTGA GCAAGAAGTT 16969 .......... .......... .......... .......... .......... .......... 453 CAAAGAATAA TTTATTTGCA GAACATTGCA AATCAGCTAC CAGATGCATT TACTAATCTT 16909 .......... .......... .......... .......... .......... .......... 453 CCAAGGATTA CTAAATCGCA TATTCCAGCT GTTAATGCTC CAGTTTGAGT TGATATCCCG 16849 .......... .......... .......... .......... .......... .......... 453 ACGGGACAAA TAGTTAAGGC AAATGAGTCT AGACCACATT TGAAGCGTGG TAGACCAATT 16789 .......... .......... .......... .......... .......... .......... 453 GGTTCCAAGG ATAAAAATCC TCGAAAGAGA AAAGGAATAA ATGATCAATA TGATCATGGT 16729 .......... .......... .......... .......... .......... .......... 453 TGAAAGAAAT TTCTCAAGAT GAGACCCAAG TCATAACACA TGATGATGAG GAGGTTCCGA 16669 .......... .......... .......... .......... .......... .......... 453 ACTTCTGAAA ATAATGAAAT TTCAATGAAT TATGTCTCGA CGAGAAAGTT GTGGAACCGA 16609 .......... .......... .......... .......... .......... .......... 453 AATAATGTTG TGATTGACAA CATATTTGCC TATAATGTTG CTATTGAAAT AATGCAACAA 16549 .......... .......... .......... .......... .......... .......... 453 GATGAAGATT TTGAGCCAAA ATCTGTTCAC GAATGTAGAC AGAGAAATGA TTGGCCAAAA 16489 .......... .......... .......... .......... .......... .......... 453 TGGAAGGATG CAATTCAAGC TGAATTGTCT TCACTAGAAA AATGTGAAGT TTTTGGACCG 16429 .......... .......... .......... .......... .......... .......... 453 ATAATCCAAA CACCTGAAGG TATCAAGCCA GTGGGGTACA AATGGGTTTT TGTACGAAAA 16369 .......... .......... .......... .......... .......... .......... 453 AGAAATGAGA AAGGTGAAGT CATGAGATAT AAGGCCCGAC TCGTTGCTCA AGGTTTTTCT 16309 .......... .......... .......... .......... .......... .......... 453 CAAAGACCTA ACATTTATTA TATGGAGACA TATTCTCCAG TGGTAGATGC AATCACCTTC 16249 .......... .......... .......... .......... .......... .......... 453 AGATATCTCA TAAATCTGGT AGTTCATGAA AAACTTGAAA TGCGTCTAAT CGACGTTGTC 16189 .......... .......... .......... .......... .......... .......... 453 ACAGCCTATC TATATGGCTC ATTGGACCAC AACATTTTCA TGAAAATTCC TAAAGCATTC 16129 .......... .......... .......... .......... .......... .......... 453 AAAGTGCCTG AAGCATACAA AGATTCAAGA GAAACTTGTT CAATAAAACT TCAGAAATCT 16069 .......... .......... .......... .......... .......... .......... 453 CTGTATGGAT TGAAACAATC AGGAAGGATG TGGTACAATC GCCTGAGTGA ATATTTGTTA 16009 .......... .......... .......... .......... .......... .......... 453 AAGAAAGGGT ACAAAAATGA CCCGATTTGT CCCTGCATTT TCATTAAACA GTCGGGGTCT 15949 .......... .......... .......... .......... .......... .......... 453 TAATTTGTAA TAATAGTTGT GTATGTTGAT GGTTTGAACA TCATTGGCAC TCATAAAGAG 15889 .......... .......... .......... .......... .......... .......... 453 CTTTTAAAAG CTGTTGAGTG TCTGAAAAAA GAATTTGAAA TGAAAGATCT CGGCAAGACA 15829 .......... .......... .......... .......... .......... .......... 453 AAATTTTATC TTGGCCTACA GATTGAGAAT TTGTCAAATG GAATACTTGT TCATCAATCA 15769 .......... .......... .......... .......... .......... .......... 453 ACGTACACAG AAAAGATACT AAAGCGTTTT TACATGGATA ACTCACATCC ATTGAGTACT 15709 .......... .......... .......... .......... .......... .......... 453 CCAATGGTGG TAAGATCGCT TGACATCAAT ACAGATCCAT TTCGACCTCA AGAGAATGAT 15649 .......... .......... .......... .......... .......... .......... 453 GAAGAGCTTC TTGGTGATGA AACTCCTTAT CTTAGTGCGA TCGGGGCACT AATGTACCTT 15589 .......... .......... .......... .......... .......... .......... 453 GCTAACAATA CTCGACCAGA TATCTATTTT GCAGTAAGTC TACTAGCAAG ATTCAGTTCC 15529 .......... .......... .......... .......... .......... .......... 453 TCCCCAACAA AAAGACATTG GAATGGTGTT AAACACATAT TTCGATATCT TCGAGGGACC 15469 .......... .......... .......... .......... .......... .......... 453 ATGCACATGG GTTTATTCTA TTCCAATGAA TCCAAATCAG AACTGATTGG TTACGCAGAT 15409 | .......... .......... .......... .......... .......... ........A- 454 GCACGGTATT TATCAGATCC TCATAAAGCT TGATCACAAA CAGGATATTT GTTTACATGT 15349 |||| ACACG..... .......... .......... .......... .......... .......... 459 GGAGACATGA CAATATCTTG GCGATCAATG AAGCAAACGT TGGTAGCCAC TTCTTCAAAT 15289 || || |||| |||| ||| | .......... .......... .......... .......... TGATAACCAC TTCTACAACT 479 CATGCAGAAA TAATAGCCAT CCAT 15265 |||| | ||| | |||| TGTGCATGAT CAATTGAGCA CCAT 503 hqPGS_C06HBa0054K13.1-12-_SGN-E540411+ (21227 20908,19234 19205) ******************************************************************************** EST sequence 1 -strand 702 n (File: SGN-E540414-) 1 AAGTAATTTC TACCCCTTTT TAGCCTACGT GGCACTAGTT TAAAAAAAAA GTCAACAACC 61 ATTGGGCCCA CAAGATAGTG CCACGTAGGT CTAAAAGGGG TAAAAAATTA TTAATAAATA 121 AGTTCAGGGG GTAATAAGAT CTTAGTATGG TATAAGTGTA TCTCTGAGAT TTTGGACATA 181 GGCTAAGGGG GTACTTGGAC ATTATCCCAA CAATAAATAA AGGATATAAC ATGATTCAAA 241 AGACAACACG TGATAACCAC TTCTACAACT TGTGCATGAT CAATTGAGCA CCATATTGAG 301 GTTGAAGCAA CAATGGGTGA GGAGCATGAG CATAAGATGG AGAGAGTTCA AATGCATAAT 361 GTTTTAGAAT CATGACCATT GCCATTTTTG CCTCTAACAT AGCAAAATTT TGCCCAATAC 421 ATATTCTTGG ACCCCAACTA AATGGAAAAA ATACAACTTG TCCTTTTGTT GCTTTTGATA 481 TTCCTTCACT AAATCTCTCT GGCATAAACT CCATTGCATC ATCTCCCCAT ATTTCAGTAT 541 CATGATGCAC TAACATTGTT GCCAATATGA GTTGGACCCC AGAGGGTAAA CACAAATCCC 601 CTAACTTTGT TTCTGTATTC ACCATGCGAT TAATCGCGTA TACTGATGTA TACAACCTTA 661 AGACCTCGTT TAAGATCATT GTAACCACTT TTAGTTGATT CA Predicted gene structure (within gDNA segment 21788 to 14539): Exon 1 21125 20908 ( 218 n); cDNA 1 215 ( 215 n); score: 0.885 Intron 1 20907 19235 (1673 n); Pd: 0.000 (s: 0.82), Pa: 0.000 (s: 0) Exon 2 19234 19205 ( 30 n); cDNA 216 244 ( 29 n); score: 0.767 Intron 2 19204 15411 (3794 n); Pd: 0.000 (s: 0), Pa: 0.733 (s: 0) Exon 3 15410 15404 ( 7 n); cDNA 245 250 ( 6 n); score: 0.714 Intron 3 15403 15309 ( 95 n); Pd: 0.874 (s: 0), Pa: 0.000 (s: 0.66) Exon 4 15308 15265 ( 44 n); cDNA 251 294 ( 44 n); score: 0.659 MATCH C06HBa0054K13.1-12- SGN-E540414- 0.885 299 0.426 C PGS_C06HBa0054K13.1-12-_SGN-E540414- (21125 20908,19234 19205,15410 15404,15308 15265) Alignment (genomic DNA sequence = upper lines): AAGTAATTTT CTACCCCTTT TTAGCCTACG TGGCACTGGT TTGGAACAAA AAGTCAACCA 21066 |||||| ||| |||||||||| |||||||||| ||||||| || || || ||| |||||||| | AAGTAA-TTT CTACCCCTTT TTAGCCTACG TGGCACTAGT TT-AAAAAAA AAGTCAACAA 58 TCGTTGGACC CACAAGATAG TGCCACGTAG GTCGAAAAGG GGTAAAAAAT TATTAATAAA 21006 | |||| || |||||||||| |||||||||| ||| |||||| |||||||||| ||||||| || CCATTGGGCC CACAAGATAG TGCCACGTAG GTCTAAAAGG GGTAAAAAAT TATTAAT-AA 117 ATAATTTCAG GGGGTAATAG GACCTTAGTA TAGTATAAGT GTGTCTCTGA GATTTCGGGT 20946 |||| ||||| ||||||||| || ||||||| | |||||||| || ||||||| ||||| || ATAAGTTCAG GGGGTAATAA GATCTTAGTA TGGTATAAGT GTATCTCTGA GATTTTGGAC 177 ATAGGTTGAG GAGGTACTTG GACATTATCC CTATAAAAAT TAAGAAAGAG TTTACCATGA 20886 ||||| | || | |||||||| |||||||||| | | || | ATAGGCTAAG GGGGTACTTG GACATTATCC CAACAATA.. .......... .......... 215 ATATATTCAA ATTATAAAAA ATTGTGGCCG AGTACCATTA TCTCCGAATC TATGCCTAGA 20826 .......... .......... .......... .......... .......... .......... 215 AACACATTTA TACTATATCA AGGTCTTATT ACCCTCTAAA CTTATTTTAT AAATGATTTT 20766 .......... .......... .......... .......... .......... .......... 215 CAATTTTTTT TTGGCCTACG TGGTACTATC CTGTGGGTCA AACGCGTGTT GACATTTTAT 20706 .......... .......... .......... .......... .......... .......... 215 TTTAAGCTAA TACAACGTAG GCTGAAAAAA GAATAGAAAA TTATTTATAA AATAAGTTCA 20646 .......... .......... .......... .......... .......... .......... 215 GGAGGTAATA AAATCATCTT AATATAGTAT TCAATATATC TTTGGAATTT CAAAAATAGA 20586 .......... .......... .......... .......... .......... .......... 215 TTGAACGTAC TCGCGCATTT TACCAAAAAA ACTAATCAAA GAACACCAAT ATTGTTCTAA 20526 .......... .......... .......... .......... .......... .......... 215 TTGGTGTACA GATTACATTA ATATCGGGGA ATAAAAGCAT CAATGATGGC ATTAAAACAT 20466 .......... .......... .......... .......... .......... .......... 215 ACAACACCTC AACATTTAGT AGACCTACGA TGTTTATTTA TTTCATCAAC TTAAATTGAC 20406 .......... .......... .......... .......... .......... .......... 215 ATACTTAATT TAATTAGATT TTATTACTTT AATTATGCTA TAGATTAGTC TTTTGCTTTT 20346 .......... .......... .......... .......... .......... .......... 215 TTGCTCTTCC TCTCAAATTT AAATTTTCTC ATTTAGTTAT TTCTCAATAC ATGTGGAATG 20286 .......... .......... .......... .......... .......... .......... 215 GACAAATAAT TTAAATAAAT GAATTTTAGT TGGGAACATC AAAGGTTGCC TAGTTTTTTT 20226 .......... .......... .......... .......... .......... .......... 215 TTAGTTTTTT TTTTTTGCAC AATAAGAATA ACAATAATAA TAAAAATGTT AATTGAGTAG 20166 .......... .......... .......... .......... .......... .......... 215 TTATTTCCTA ATTTAATTTG TCATTTTTAA GCAATTAATA TTTTGTTAAA AGATTCAAAA 20106 .......... .......... .......... .......... .......... .......... 215 CTTCTATTTT AATTGGCTGA AATATAATAA ATATGCATCT TAAGTTGAAC TATAGACATA 20046 .......... .......... .......... .......... .......... .......... 215 TATCATAATT TTTTGAGTAA AAGATATATT CACTCTAAAT CGCAAAATTA AAAAATTGTT 19986 .......... .......... .......... .......... .......... .......... 215 GTAAATCCAT TGTATATGTA GATGATCCAC TAGAGTTATC CAACAATTAA TTGGATTCAT 19926 .......... .......... .......... .......... .......... .......... 215 GTATTAGTGT TTCCAATGTG ATAAGATATC AAGGTGATAT GAACCTTGAT GATAACTATG 19866 .......... .......... .......... .......... .......... .......... 215 TAAAATTTCA AGGTGACCTT TGACTATGAT ATCTCAACAC TATAAATAGA GATATCATTC 19806 .......... .......... .......... .......... .......... .......... 215 ACCATTGTAT GATATACTTG AATAAGAAAA TTATCTCCTC TATCTTATAC TTCTTGTCTT 19746 .......... .......... .......... .......... .......... .......... 215 TTTCATCTTA TATTCTGAGC TTTCTTTACA ACACGTTATC AGCACGAAAT TGCTACTTGC 19686 .......... .......... .......... .......... .......... .......... 215 AAAGGTACTA TATAAATATT TTTATTTAAT TCACATATTC TCTCATAATT TTCATTATGT 19626 .......... .......... .......... .......... .......... .......... 215 CGAATTTATC CAAACTTGAG TTTGTGGCAT TAGATATTTC TGGAAAGAAT TATCTTTCAT 19566 .......... .......... .......... .......... .......... .......... 215 GGGTACTCGA TGCTGAGATT CACTTGGCTG CTAAAGGTCT TGATGCCACT ATTACTCAGG 19506 .......... .......... .......... .......... .......... .......... 215 GAAAAGAAGC ATCCAGTCAA GATAAGGCGA AGGCTATGAT TTTCCTTCGT TATCATCTTG 19446 .......... .......... .......... .......... .......... .......... 215 ATGAGGGCCT GAAGATTGAA TATCTGACGG TGAAATATCC ACTTGAATAG TGGACTGATT 19386 .......... .......... .......... .......... .......... .......... 215 TAAAGGGGAG ATATGACCAC CGAAAGGCAA CAGTGTTGCC AAGAGCTCGT TATGAGTGGA 19326 .......... .......... .......... .......... .......... .......... 215 TGCATTTATG GTTTCAAGAT TTTAAGACCG TAATTGAATA CAACAGAGTT GTATTCAGGA 19266 .......... .......... .......... .......... .......... .......... 215 TAACCTCCCA GTTGAAATTA TGTGGGGAGA CTATAAAAGA TGAGAACATG TTGGAAAAGA 19206 ||||| || | | |||||| | |||||| .......... .......... .......... .AATAAAGGA T-ATAACATG ATTCAAAAGA 243 CACTTACTAC TTTTCATGCC TCGAATGTGA TATTGCAGTA GCAATATCGT GAAAAGGGTT 19146 | C......... .......... .......... .......... .......... .......... 244 TTCAGAAATA TTCTGAACTA ATCTCATGTC TTTTGGTGGC TGAACAACAT AATGCTCTTT 19086 .......... .......... .......... .......... .......... .......... 244 TAATGAAAAA TCATGAAGCT CGTCCCACTG GAGCTGCTCC ATTACCGGAG GCAAATGTGG 19026 .......... .......... .......... .......... .......... .......... 244 TGGAAGCACG TGATCAATCT GAAGTAAAAA GAGATGATCA TCGGGGATAT AATAATGTAT 18966 .......... .......... .......... .......... .......... .......... 244 GGGGACGTGG CAAAGATAAA AGACGATACA CTAATCGTCA AGATGGTGAT CATAATAAAA 18906 .......... .......... .......... .......... .......... .......... 244 GGGAGAACAA CATGAGTTCT CAAAATAACC CCTCAAAAAG TAATTGTCGT CATTGTGGCA 18846 .......... .......... .......... .......... .......... .......... 244 TGAAAGGCCA TTGGAAGAAT GAATGTCGCA CACATGAACA TTTTGTAAGG CTCTATCAAA 18786 .......... .......... .......... .......... .......... .......... 244 ATTCCTTCAA AAAGAAAGGA AATAAAAGTG GTGCTTCCTC TTCCAATGCT CGAGCTGAGT 18726 .......... .......... .......... .......... .......... .......... 244 CACATCTGAC TCTTAAAGAT GGTGATAAGC CGGGAACATC TCAGAAATAT GATAAAGATG 18666 .......... .......... .......... .......... .......... .......... 244 TTGAAGAAAA TTTGGCTTTA AGGGATGATG TTTTTGATGG CCTTGGTGAC ATTACTCATA 18606 .......... .......... .......... .......... .......... .......... 244 TGGAAGTTGA TGACTTCTTT GGAGATCGAA ACTAATGTTT GATCTTTTAG CTGGGGAATG 18546 .......... .......... .......... .......... .......... .......... 244 AAATTTGTTA ATATTTTACT TATGTATTTT TAATTATTAT GTTATTCATG TTGAAGTATT 18486 .......... .......... .......... .......... .......... .......... 244 TAAATTTCAG TTGTTAATTT TGTTTCTTCC TCCTTTTGAT GTATTTTATT TTAATGAAAA 18426 .......... .......... .......... .......... .......... .......... 244 TTAATAGAAA TCCCCAGTTG TCAGTTGGAT TCAAGATGAG TAATGGAGAT GTATGCCTTC 18366 .......... .......... .......... .......... .......... .......... 244 TTGATAGTGC TACAACGCAT ACAATATTAA AAGAAAAGAA ATACTTTTCT AATTTGGTTA 18306 .......... .......... .......... .......... .......... .......... 244 TGAAAATGGC ATATGTCAAC ACAATATCAG GTAGTACAAA ATTAATTGAG GGCTCTGGAA 18246 .......... .......... .......... .......... .......... .......... 244 GAGCGACCTT ATTACTACCT GGAGGGACAA TATTAAGCAT TGATAATGCA TTATATTGTA 18186 .......... .......... .......... .......... .......... .......... 244 GTAAGTCTCA AAGAAACTTA TTAAGTTTCA AAGTTATTCG CCAAAATGGC TATCATGTTG 18126 .......... .......... .......... .......... .......... .......... 244 AGACGACTAA TGAAGGAAAG GTTGAATACC TTTACATTAC TACAATTAAT GTAGAGAAGA 18066 .......... .......... .......... .......... .......... .......... 244 AAATTGTGCA TGAAAAATCA CCTGCATTTT CTTCTGGGTT GTACTATACA AGTATAAGTA 18006 .......... .......... .......... .......... .......... .......... 244 CAGTCGAATC ACATGCCGTA GTAAACAAAA GGTTTACTAA TTTTAATGAT TTTATTATTT 17946 .......... .......... .......... .......... .......... .......... 244 GGCATGACCA GTTGGGCCAT CCCAGATTTA ATATGATGCG CAAAATCATT GAGAATTCAC 17886 .......... .......... .......... .......... .......... .......... 244 ATGGGCACAC CTTAAAGAGC CCAAATATCC TTCAATCAAA GGAATTCTCT TGTGCTGCTT 17826 .......... .......... .......... .......... .......... .......... 244 GTTCTCAAGG AAAGTTGATC ATTAAACCAT CAACAGTTAA AGTTGGAATT GAATCCCCTG 17766 .......... .......... .......... .......... .......... .......... 244 CGTTTCTGGA ACGTATACAG GATGATATAT GTGGACCAAT TCAACCTGCA TGTGGACCAT 17706 .......... .......... .......... .......... .......... .......... 244 TTAAATATTA TATGGTCTTG ATAGATGTTT CTACAAGATG GTCACATGTG TGTTTATTAT 17646 .......... .......... .......... .......... .......... .......... 244 CAACTCGCAA CATGGCTTTT GCGAGATTGC TGGCTCAAAT AATAAGATTG AAAGCACAAT 17586 .......... .......... .......... .......... .......... .......... 244 TTCCAGACTA TACAATAAAG ACAATCCGTC TAGATAATGA TGGTGAGTTT ACATCTCAAG 17526 .......... .......... .......... .......... .......... .......... 244 CATTTAATGA TTATTGTATG TCTACTGGTA TAACAGTTGA ACATCCAGTT GCTCATGTTC 17466 .......... .......... .......... .......... .......... .......... 244 ACACTCAAAA CGGTCTAGCA GAATCATTGA TTAAACGTCT ACAATTGATA GTTAGACCAT 17406 .......... .......... .......... .......... .......... .......... 244 TACTAGTGAG AACAAAGTTA TCTGTGTCGA TGTGGGGGCA TGTTATTTTG CATGCAGCAG 17346 .......... .......... .......... .......... .......... .......... 244 CACTTGTGCG CATAAGGCCG ACCAATTATC ATGAATTCTC CCCATTACAA TTAACTTTTG 17286 .......... .......... .......... .......... .......... .......... 244 GTCAAGAACC AAACATTTCC CATCTCAGAG TTTTTGAATG TGCGGTGTAT GTCCCAATTG 17226 .......... .......... .......... .......... .......... .......... 244 CTCCACCACA ATGCACAAAG ATGGGGCCCC AAAGAAGGTT GGCGATATAT GTTGGGTATG 17166 .......... .......... .......... .......... .......... .......... 244 AATCTCCTTC AATCATAAAA TATTTGGAGC CTATGACTGG AGATTTATTT AAGGCAAGAT 17106 .......... .......... .......... .......... .......... .......... 244 TTGCTGATTG TCATTTTGAT GAATCAGTAT ACCCAACATT AGGGGGAGAA CATAAGTCAT 17046 .......... .......... .......... .......... .......... .......... 244 TGGGAAAAGA GATAGATTGG AATTCATCAT CTCTATCTCA TCTGGATCCT CGAACAAACC 16986 .......... .......... .......... .......... .......... .......... 244 AATGTGAGCA AGAAGTTCAA AGAATAATTT ATTTGCAGAA CATTGCAAAT CAGCTACCAG 16926 .......... .......... .......... .......... .......... .......... 244 ATGCATTTAC TAATCTTCCA AGGATTACTA AATCGCATAT TCCAGCTGTT AATGCTCCAG 16866 .......... .......... .......... .......... .......... .......... 244 TTTGAGTTGA TATCCCGACG GGACAAATAG TTAAGGCAAA TGAGTCTAGA CCACATTTGA 16806 .......... .......... .......... .......... .......... .......... 244 AGCGTGGTAG ACCAATTGGT TCCAAGGATA AAAATCCTCG AAAGAGAAAA GGAATAAATG 16746 .......... .......... .......... .......... .......... .......... 244 ATCAATATGA TCATGGTTGA AAGAAATTTC TCAAGATGAG ACCCAAGTCA TAACACATGA 16686 .......... .......... .......... .......... .......... .......... 244 TGATGAGGAG GTTCCGAACT TCTGAAAATA ATGAAATTTC AATGAATTAT GTCTCGACGA 16626 .......... .......... .......... .......... .......... .......... 244 GAAAGTTGTG GAACCGAAAT AATGTTGTGA TTGACAACAT ATTTGCCTAT AATGTTGCTA 16566 .......... .......... .......... .......... .......... .......... 244 TTGAAATAAT GCAACAAGAT GAAGATTTTG AGCCAAAATC TGTTCACGAA TGTAGACAGA 16506 .......... .......... .......... .......... .......... .......... 244 GAAATGATTG GCCAAAATGG AAGGATGCAA TTCAAGCTGA ATTGTCTTCA CTAGAAAAAT 16446 .......... .......... .......... .......... .......... .......... 244 GTGAAGTTTT TGGACCGATA ATCCAAACAC CTGAAGGTAT CAAGCCAGTG GGGTACAAAT 16386 .......... .......... .......... .......... .......... .......... 244 GGGTTTTTGT ACGAAAAAGA AATGAGAAAG GTGAAGTCAT GAGATATAAG GCCCGACTCG 16326 .......... .......... .......... .......... .......... .......... 244 TTGCTCAAGG TTTTTCTCAA AGACCTAACA TTTATTATAT GGAGACATAT TCTCCAGTGG 16266 .......... .......... .......... .......... .......... .......... 244 TAGATGCAAT CACCTTCAGA TATCTCATAA ATCTGGTAGT TCATGAAAAA CTTGAAATGC 16206 .......... .......... .......... .......... .......... .......... 244 GTCTAATCGA CGTTGTCACA GCCTATCTAT ATGGCTCATT GGACCACAAC ATTTTCATGA 16146 .......... .......... .......... .......... .......... .......... 244 AAATTCCTAA AGCATTCAAA GTGCCTGAAG CATACAAAGA TTCAAGAGAA ACTTGTTCAA 16086 .......... .......... .......... .......... .......... .......... 244 TAAAACTTCA GAAATCTCTG TATGGATTGA AACAATCAGG AAGGATGTGG TACAATCGCC 16026 .......... .......... .......... .......... .......... .......... 244 TGAGTGAATA TTTGTTAAAG AAAGGGTACA AAAATGACCC GATTTGTCCC TGCATTTTCA 15966 .......... .......... .......... .......... .......... .......... 244 TTAAACAGTC GGGGTCTTAA TTTGTAATAA TAGTTGTGTA TGTTGATGGT TTGAACATCA 15906 .......... .......... .......... .......... .......... .......... 244 TTGGCACTCA TAAAGAGCTT TTAAAAGCTG TTGAGTGTCT GAAAAAAGAA TTTGAAATGA 15846 .......... .......... .......... .......... .......... .......... 244 AAGATCTCGG CAAGACAAAA TTTTATCTTG GCCTACAGAT TGAGAATTTG TCAAATGGAA 15786 .......... .......... .......... .......... .......... .......... 244 TACTTGTTCA TCAATCAACG TACACAGAAA AGATACTAAA GCGTTTTTAC ATGGATAACT 15726 .......... .......... .......... .......... .......... .......... 244 CACATCCATT GAGTACTCCA ATGGTGGTAA GATCGCTTGA CATCAATACA GATCCATTTC 15666 .......... .......... .......... .......... .......... .......... 244 GACCTCAAGA GAATGATGAA GAGCTTCTTG GTGATGAAAC TCCTTATCTT AGTGCGATCG 15606 .......... .......... .......... .......... .......... .......... 244 GGGCACTAAT GTACCTTGCT AACAATACTC GACCAGATAT CTATTTTGCA GTAAGTCTAC 15546 .......... .......... .......... .......... .......... .......... 244 TAGCAAGATT CAGTTCCTCC CCAACAAAAA GACATTGGAA TGGTGTTAAA CACATATTTC 15486 .......... .......... .......... .......... .......... .......... 244 GATATCTTCG AGGGACCATG CACATGGGTT TATTCTATTC CAATGAATCC AAATCAGAAC 15426 .......... .......... .......... .......... .......... .......... 244 TGATTGGTTA CGCAGATGCA CGGTATTTAT CAGATCCTCA TAAAGCTTGA TCACAAACAG 15366 | || || .......... .....A-ACA CG........ .......... .......... .......... 250 GATATTTGTT TACATGTGGA GACATGACAA TATCTTGGCG ATCAATGAAG CAAACGTTGG 15306 || .......... .......... .......... .......... .......... .......TGA 253 TAGCCACTTC TTCAAATCAT GCAGAAATAA TAGCCATCCA T 15265 || ||||||| | ||| | | ||| | || | | ||| | TAACCACTTC TACAACTTGT GCATGATCAA TTGAGCACCA T 294 hqPGS_C06HBa0054K13.1-12-_SGN-E540414- (21125 20908,19234 19205) ******************************************************************************** EST sequence 4 -strand 663 n (File: SGN-E367848-) 1 AAATTTGATG CTGCTCGACA GAAAAGTAAT CAAGAATGTG AGCCATGTAG TCCATGATAA 61 CTAGGCCAAT CCAGCGTATA TCCATGAGTA GGTCGAGACT GATGACCCAA GTACCAAATC 121 AAACACCTGA ATATTATCAA GAAGCTTCCT GGCAGCCAAA ATGAGATTGC GTGAAATGCA 181 ACTCATCACT CATACGATGA GTCTCGTATG CGCCCACATA TTTAATTTCC ATGTGCGGCC 241 GTTATGATGG ATTTACGAAT ACAAGTATCT GTGTGCTTTT AGATTTAAAG AATTTGGATA 301 GACATATCTG TGGGTCATGC TGGGAATTGG GGAAACCATG TGCTGCTTTT TAATTTGATA 361 ATCTCGGATT CTATTTTTTA TTTTACTTTT TAAAGAAAAA AAGTCTGAAT ATCCTTTAAT 421 TTTATTTTAT TGTTATAAAT CCATTGAATT GTGTGGATTG TCCTTTAGAT TTACTCAAGA 481 CTTAATTGTA TTCATGTATA CATGTTCCCA AGGTGATAAG AATCATTTGG ATAACTATGT 541 ACCTACTAAT TGGACATTTA TCATGGGGGC TTTTGGGGTG ATATCTCAAC TCTATAAATA 601 GAGATATCAT TCACCTTTTG TAATACATAC TTGAATAAGA AAATTATCTC CTCTAAAAAA 661 AAA Predicted gene structure (within gDNA segment 26946 to 19084): Exon 1 22678 22663 ( 16 n); cDNA 387 402 ( 16 n); score: 0.938 Intron 1 22662 20804 (1859 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0) Exon 2 20803 20778 ( 26 n); cDNA 403 428 ( 26 n); score: 0.769 Intron 2 20777 19992 ( 786 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.72) Exon 3 19991 19764 ( 228 n); cDNA 429 655 ( 227 n); score: 0.739 MATCH C06HBa0054K13.1-12- SGN-E367848- 0.739 270 0.407 C PGS_C06HBa0054K13.1-12-_SGN-E367848- (22678 22663,20803 20778,19991 19764) Alignment (genomic DNA sequence = upper lines): TTTTTAAAAA AAAAAAACAA AAACAAATGA ACTTTAATAT GTTGAATCTG AATTTGTTGA 22619 |||||||| | |||||| TTTTTAAAGA AAAAAA.... .......... .......... .......... .......... 402 GTGCAGACAA ATGAGGCCTA AATATTAAGA CAACCTAATG ACTTTTGACT TCTTAATCCT 22559 .......... .......... .......... .......... .......... .......... 402 TTTCATGTCA TGTATACATA TATAGTGTGT GTGATCATGT TTCATTATGT CATTTTATAT 22499 .......... .......... .......... .......... .......... .......... 402 ATAACACAAT TTAATATCTA CTTATATTCT TTCTGTTAGG GGTATTATGT ATTTTAAATG 22439 .......... .......... .......... .......... .......... .......... 402 ATGCAGACTA ATGCATGTAT CTAGACACAC CGATTAAGCA ACACGTTAAA GTTTTCATAT 22379 .......... .......... .......... .......... .......... .......... 402 CCTACTTTGG ATGAGCCCCC ACCCTGCTTT CAAGGGTTCC CTAACTCCTA TCTTTCAGCA 22319 .......... .......... .......... .......... .......... .......... 402 CATTAGATTA TTTCTCTTAA GATGTGTCGA CAGAGACGGA TCTACATGAA TATGAGGGGT 22259 .......... .......... .......... .......... .......... .......... 402 TCATTCGATC CCCCTTTATT GGAAAGGTTA TATAGTATAC ATAGGCTTAA TTCTTTTATT 22199 .......... .......... .......... .......... .......... .......... 402 TATATATACA CTAAGTGATG AACCCTTTGG ACAAGTGCTT GCGACTTCAA CTCCACATAT 22139 .......... .......... .......... .......... .......... .......... 402 AACAATGTTT TTTCTCCATT GTTTCAACTG ATTTTCATTT TTATTTCTAA ATAAATGAAA 22079 .......... .......... .......... .......... .......... .......... 402 GATTTGTTTT GTTGGAAACC TATTGGGACT AATAATATTT TATTAGACAT TAAAAAATAA 22019 .......... .......... .......... .......... .......... .......... 402 ATTTATTTTC TATTTTTATA GAATTAAGTA AAAGTTATAA CGTTTTTTAA GTTTTCAGAA 21959 .......... .......... .......... .......... .......... .......... 402 TTAAAATTAA AAAATACATT CTTTCATATT CATTTTAAGT CAAATGCTTG ATTTATATTT 21899 .......... .......... .......... .......... .......... .......... 402 AATGAAAAAA TAATATAAAT ATAAGTAAGA TTAAATAAAT AAGGATTATT TAAATTTATA 21839 .......... .......... .......... .......... .......... .......... 402 AATAAATAAG AGTAGTTATA TAAAATTTAT TAATAAATAT GATGGTCGCT ATATTTTTCA 21779 .......... .......... .......... .......... .......... .......... 402 TTCTTGATAA TTATTTTTTC GACACGGATT TTATTGCTAC AATATGATTG GATTACTGAA 21719 .......... .......... .......... .......... .......... .......... 402 TAATGTTTAT ATATCACAAT GACACAGACA AAACTCATAA TTATAGTTTT AAAAAATACA 21659 .......... .......... .......... .......... .......... .......... 402 TTCTCTCGTA CTCAATTTAA TGTTATGTCA AAAATATATT TATTTAATTT TATTGTTTGT 21599 .......... .......... .......... .......... .......... .......... 402 GTTAAGGTAG AGTTGAATTT TTTTAATTAC TTATATCTGA AACTCATTTA TATTTAACCC 21539 .......... .......... .......... .......... .......... .......... 402 GCCGCGTCCG CGTTGCTTCT ACAAATACTA TTAGGATACT TAGTTATTTT TTGAACCTCC 21479 .......... .......... .......... .......... .......... .......... 402 TCGATAAAAA TTCTGCCTCC ATCATTAAAT ATTATTAGCC GTTGTATTGT TGTATGATAA 21419 .......... .......... .......... .......... .......... .......... 402 TTAATACAAA TTATCTATTT TATAAGAAAT TTCCTCTCAA ATGCTTGAAA TTATGTTTTC 21359 .......... .......... .......... .......... .......... .......... 402 CGTTTATGTC TAAAAAAATA AATGTGCACA CTATATTATG TCATGCTATG GATACGTTTG 21299 .......... .......... .......... .......... .......... .......... 402 GCTAACAATG GTCATGAGAT TTTACCACTA TAATGGATGG ACTCAAATTA TAATGTAAAA 21239 .......... .......... .......... .......... .......... .......... 402 TCTTGATATA TAAAAATGGG ATAATGCACA AGTACCCCTC AATCTATGCC CGAAATTTCA 21179 .......... .......... .......... .......... .......... .......... 402 GAGACACACT TATACTATAC TAAGGTCCTA TTACCTCCCT GAACTTATTT TATAAGTAAT 21119 .......... .......... .......... .......... .......... .......... 402 TTTCTACCCC TTTTTAGCCT ACGTGGCACT GGTTTGGAAC AAAAAGTCAA CCATCGTTGG 21059 .......... .......... .......... .......... .......... .......... 402 ACCCACAAGA TAGTGCCACG TAGGTCGAAA AGGGGTAAAA AATTATTAAT AAAATAATTT 20999 .......... .......... .......... .......... .......... .......... 402 CAGGGGGTAA TAGGACCTTA GTATAGTATA AGTGTGTCTC TGAGATTTCG GGTATAGGTT 20939 .......... .......... .......... .......... .......... .......... 402 GAGGAGGTAC TTGGACATTA TCCCTATAAA AATTAAGAAA GAGTTTACCA TGAATATATT 20879 .......... .......... .......... .......... .......... .......... 402 CAAATTATAA AAAATTGTGG CCGAGTACCA TTATCTCCGA ATCTATGCCT AGAAACACAT 20819 .......... .......... .......... .......... .......... .......... 402 TTATACTATA TCAAGGTCTT ATTACCCTCT AAACTTATTT TATAAATGAT TTTCAATTTT 20759 |||| | || ||| | || |||||| | .......... .....GTCTG AATATCCTTT AATTTTATTT T......... .......... 428 TTTTTGGCCT ACGTGGTACT ATCCTGTGGG TCAAACGCGT GTTGACATTT TATTTTAAGC 20699 .......... .......... .......... .......... .......... .......... 428 TAATACAACG TAGGCTGAAA AAAGAATAGA AAATTATTTA TAAAATAAGT TCAGGAGGTA 20639 .......... .......... .......... .......... .......... .......... 428 ATAAAATCAT CTTAATATAG TATTCAATAT ATCTTTGGAA TTTCAAAAAT AGATTGAACG 20579 .......... .......... .......... .......... .......... .......... 428 TACTCGCGCA TTTTACCAAA AAAACTAATC AAAGAACACC AATATTGTTC TAATTGGTGT 20519 .......... .......... .......... .......... .......... .......... 428 ACAGATTACA TTAATATCGG GGAATAAAAG CATCAATGAT GGCATTAAAA CATACAACAC 20459 .......... .......... .......... .......... .......... .......... 428 CTCAACATTT AGTAGACCTA CGATGTTTAT TTATTTCATC AACTTAAATT GACATACTTA 20399 .......... .......... .......... .......... .......... .......... 428 ATTTAATTAG ATTTTATTAC TTTAATTATG CTATAGATTA GTCTTTTGCT TTTTTGCTCT 20339 .......... .......... .......... .......... .......... .......... 428 TCCTCTCAAA TTTAAATTTT CTCATTTAGT TATTTCTCAA TACATGTGGA ATGGACAAAT 20279 .......... .......... .......... .......... .......... .......... 428 AATTTAAATA AATGAATTTT AGTTGGGAAC ATCAAAGGTT GCCTAGTTTT TTTTTAGTTT 20219 .......... .......... .......... .......... .......... .......... 428 TTTTTTTTTG CACAATAAGA ATAACAATAA TAATAAAAAT GTTAATTGAG TAGTTATTTC 20159 .......... .......... .......... .......... .......... .......... 428 CTAATTTAAT TTGTCATTTT TAAGCAATTA ATATTTTGTT AAAAGATTCA AAACTTCTAT 20099 .......... .......... .......... .......... .......... .......... 428 TTTAATTGGC TGAAATATAA TAAATATGCA TCTTAAGTTG AACTATAGAC ATATATCATA 20039 .......... .......... .......... .......... .......... .......... 428 ATTTTTTGAG TAAAAGATAT ATTCACTCTA AATCGCAAAA TTAAAAAATT GTTGTAAATC 19979 ||| ||| |||||| .......... .......... .......... .......... .......ATT GTTATAAATC 441 CATTGTA-TA TGTAGATGAT CCACTAGAGT TATCCAACAA TTAATTGGAT TCATGTATTA 19920 ||||| | | ||| ||| | || |||| | || ||| | ||||||| || |||||||| CATTGAATTG TGTGGATTGT CCTTTAGATT TACTCAAGAC TTAATTGTAT TCATGTATAC 501 GTGTTTCCAA TGTGATAAGA TATCAAGGTG ATATGAACCT TGATGATAAC TATGTAAAAT 19860 |||| |||| ||||||||| |||| | ||| | | | ||| | || | | | ATGTTCCCAA GGTGATAAGA -ATCATTTGG ATAACTATGT ACCTACTAA- T-TGGACATT 558 T-TCAAGGTG ACCTTTGACT ATGATATCTC AACACTATAA ATAGAGATAT CATTCACCAT 19801 | ||| || | | |||| ||||||||| ||| |||||| |||||||||| |||||||| | TATCATGGGG GCTTTTG-GG GTGATATCTC AACTCTATAA ATAGAGATAT CATTCACCTT 617 T-GTATGATA TACTTGAATA AGAAAATTAT CTCCTCTA 19764 | ||| | | |||||||||| |||||||||| |||||||| TTGTAATACA TACTTGAATA AGAAAATTAT CTCCTCTA 655 hqPGS_C06HBa0054K13.1-12-_SGN-E367848- (20803 20778,19991 19764) ******************************************************************************** EST sequence 5 +strand 629 n (File: SGN-E325909+) 1 TTTTCTTTCT TTTAGAATTC TAGTAAGTTC TTTTCTAACA AGAATTTTAG TAAGTTCTTT 61 TATAACACGT TATCAGCACG AAATTGCTAC TTGCAAAGGT ACTATATAAA TATTTTTATT 121 TAATTCACAT ATTCTCTCAT AATTTTCATT ATGTCGAATT TATCCAAACT TGAGTTTGTG 181 GCATTAGATA TTTCTGGAAA GAATTATCTT TCATGGGTAC TCGATGCTGA GATTCACTTG 241 GCTGCTAAAG GTCTTGATGC CACTATTACT CAGGGAAATG AAGCATCGAG TCAAGATAAG 301 GCGAAGGCTA TGATTTTCCT TCGTCATCAT CTTGATGAGG GCCTGAAGAT TGAATATCTG 361 ACAGTGAAAG ATCCACTTGA ATTGTGGACT GATTTAAAGG GGAGATATGA CCACCTAAAG 421 GCAACAGTGT TGCCAAGAGC TCGTTATGAG TGGATGCATT TACGGTTTCA AGATTTTAAG 481 ACCGTAATTG AATACAACTC TGCTGTATTC AGGATAACCT CCCAGTTGAA ATTATGTGGG 541 GAGACTATAA AAGATGAGGA CATGTTGGAA AAGACACTTA CTACTTTTCA TGCCTCGAAT 601 GTGATATTGC AGCAGCAATA TCGTGAAAA Predicted gene structure (within gDNA segment 20946 to 18541): Exon 1 19716 19151 ( 566 n); cDNA 64 629 ( 566 n); score: 0.975 MATCH C06HBa0054K13.1-12- SGN-E325909+ 0.975 566 0.900 C PGS_C06HBa0054K13.1-12-_SGN-E325909+ (19716 19151) Alignment (genomic DNA sequence = upper lines): AACACGTTAT CAGCACGAAA TTGCTACTTG CAAAGGTACT ATATAAATAT TTTTATTTAA 19657 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACACGTTAT CAGCACGAAA TTGCTACTTG CAAAGGTACT ATATAAATAT TTTTATTTAA 123 TTCACATATT CTCTCATAAT TTTCATTATG TCGAATTTAT CCAAACTTGA GTTTGTGGCA 19597 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCACATATT CTCTCATAAT TTTCATTATG TCGAATTTAT CCAAACTTGA GTTTGTGGCA 183 TTAGATATTT CTGGAAAGAA TTATCTTTCA TGGGTACTCG ATGCTGAGAT TCACTTGGCT 19537 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTAGATATTT CTGGAAAGAA TTATCTTTCA TGGGTACTCG ATGCTGAGAT TCACTTGGCT 243 GCTAAAGGTC TTGATGCCAC TATTACTCAG GGAAAAGAAG CATCCAGTCA AGATAAGGCG 19477 |||||||||| |||||||||| |||||||||| ||||| |||| |||| ||||| |||||||||| GCTAAAGGTC TTGATGCCAC TATTACTCAG GGAAATGAAG CATCGAGTCA AGATAAGGCG 303 AAGGCTATGA TTTTCCTTCG TTATCATCTT GATGAGGGCC TGAAGATTGA ATATCTGACG 19417 |||||||||| |||||||||| | |||||||| |||||||||| |||||||||| ||||||||| AAGGCTATGA TTTTCCTTCG TCATCATCTT GATGAGGGCC TGAAGATTGA ATATCTGACA 363 GTGAAATATC CACTTGAATA GTGGACTGAT TTAAAGGGGA GATATGACCA CCGAAAGGCA 19357 |||||| ||| ||||||||| |||||||||| |||||||||| |||||||||| || ||||||| GTGAAAGATC CACTTGAATT GTGGACTGAT TTAAAGGGGA GATATGACCA CCTAAAGGCA 423 ACAGTGTTGC CAAGAGCTCG TTATGAGTGG ATGCATTTAT GGTTTCAAGA TTTTAAGACC 19297 |||||||||| |||||||||| |||||||||| ||||||||| |||||||||| |||||||||| ACAGTGTTGC CAAGAGCTCG TTATGAGTGG ATGCATTTAC GGTTTCAAGA TTTTAAGACC 483 GTAATTGAAT ACAACAGAGT TGTATTCAGG ATAACCTCCC AGTTGAAATT ATGTGGGGAG 19237 |||||||||| ||||| | |||||||||| |||||||||| |||||||||| |||||||||| GTAATTGAAT ACAACTCTGC TGTATTCAGG ATAACCTCCC AGTTGAAATT ATGTGGGGAG 543 ACTATAAAAG ATGAGAACAT GTTGGAAAAG ACACTTACTA CTTTTCATGC CTCGAATGTG 19177 |||||||||| ||||| |||| |||||||||| |||||||||| |||||||||| |||||||||| ACTATAAAAG ATGAGGACAT GTTGGAAAAG ACACTTACTA CTTTTCATGC CTCGAATGTG 603 ATATTGCAGT AGCAATATCG TGAAAA 19151 ||||||||| |||||||||| |||||| ATATTGCAGC AGCAATATCG TGAAAA 629 hqPGS_C06HBa0054K13.1-12-_SGN-E325909+ (19716 19151) ******************************************************************************** EST sequence 3 +strand 625 n (File: SGN-E255922+) 1 GATCCCCCGG GCTGCAGGGT GGAATATAAC TGGTGGTAGT GATCTAACAT TATTTGAGGT 61 ACCCGACTAT TTTTTCTCTT GCTCTCTCTC TCTCTTCCGA TACACTTACT AATCATCCTT 121 AGTATGCACC TTTTGTTGAC TGAAAAAGGC AGAAATGTAT TCCATAACGT AGAAAAGATT 181 TTGGCAGTAG AAGCCTTTTA CTTTTTTCAA TGTAGAGATT TTTCTTATTG AAGATGGCAT 241 ATATGAATGT GTGAATTTCC TTGTATGATC GTCTCTTACA AAGAAAAATA AGAGAGAAAC 301 TTTATCTAAT GGTGCATGAG GGTTGTGAAA AGCTATGTTG CTTAGACTCT TCAAAAATGT 361 CGACGGGTGC GTGTCAGATC CTCCAAAAAT AGTGTATTTT TGAAGGATCT GACACGGGTG 421 CGGCAACATT TTTGGAGAGT CCAAGCAACT TAGGTGAAAA GATCAAACAA CCTATGCTTC 481 TGGTTCATCC TGTTTCCTTA TCTGCTGTTT CTCAGCATTT ATGTATGCCA ATGTTGTCAT 541 TTTTAAAGTG CGCTTAAGCC TTGAAGCGTG GTACAAAACA TGTTGAGCAC TTTGCCTCGC 601 TTTATGCACG CTTCAGTGTC GTCAT Predicted gene structure (within gDNA segment 27080 to 33919): Exon 1 28029 28044 ( 16 n); cDNA 313 326 ( 14 n); score: 0.688 Intron 1 28045 29647 (1603 n); Pd: 0.000 (s: 0), Pa: 0.928 (s: 0) Exon 2 29648 29653 ( 6 n); cDNA 327 332 ( 6 n); score: 0.500 Intron 2 29654 30999 (1346 n); Pd: 0.738 (s: 0), Pa: 0.000 (s: 0.96) Exon 3 31000 31116 ( 117 n); cDNA 333 453 ( 121 n); score: 0.833 Intron 3 31117 31780 ( 664 n); Pd: 0.000 (s: 0.70), Pa: 0.375 (s: 0) Exon 4 31781 31810 ( 30 n); cDNA 454 482 ( 29 n); score: 0.633 Intron 4 31811 32518 ( 708 n); Pd: 0.000 (s: 0), Pa: 0.987 (s: 0) Exon 5 32519 32528 ( 10 n); cDNA 483 492 ( 10 n); score: 0.700 MATCH C06HBa0054K13.1-12+ SGN-E255922+ 0.833 179 0.286 C PGS_C06HBa0054K13.1-12+_SGN-E255922+ (28029 28044,29648 29653,31000 31116,31781 31810,32519 32528) Alignment (genomic DNA sequence = upper lines): TGGATAAAGG GATTGGATAA AGCGATTTTA TGTTGATGAC AATGAAGGAA ATGGAGACGA 28088 || || ||| | ||| TGCAT-GAGG G-TTGT.... .......... .......... .......... .......... 326 GATTGCACAT GTGCTTTATG CTGATGATAC CCTATTGCAA TGTGAAGTAG ACAGGGTGCA 28148 .......... .......... .......... .......... .......... .......... 326 AGCTCTATAT TTGAGGGTCA TTTTTTCGGT GTCCAAAGTT GTGCCAGGGC TGAAATTTAA 28208 .......... .......... .......... .......... .......... .......... 326 CTTATCCAAA GGTACTGTTT TCTGTATTTA TCCTGCGGAT TCTATTGCTC AGTATGCTGA 28268 .......... .......... .......... .......... .......... .......... 326 GATCCTGCAA TGTAAAGTAG AAGTTTTTCT CACTACACAT TTGGGAATTC CGTTAGGGGT 28328 .......... .......... .......... .......... .......... .......... 326 GGCAATTAGG CGGGTTGGGT CAAATTTAGA CGGGTTATAA TGGGTTAAGA TAACAATTGG 28388 .......... .......... .......... .......... .......... .......... 326 GTCAAGACCC AACCCAACCC AAAATTGCTC GAGTCAAAAT GGGTTACATT ATGGGTCAAG 28448 .......... .......... .......... .......... .......... .......... 326 ACCCAACACA ACCCAACCCA ATTTTTACCA AGCTTAATTG TTTTATTTGT TCTTTTAAAC 28508 .......... .......... .......... .......... .......... .......... 326 CTTTTTAGTA CTTAATAAAA TCATTATTTT CTTTATTATG GCTATATACA ACATAAGAAA 28568 .......... .......... .......... .......... .......... .......... 326 TTGGAAAAAG AGTTCTATAA AAATATTTTG AGCAGATTTT TCATGAGCCA ATTTGGGTTA 28628 .......... .......... .......... .......... .......... .......... 326 CATATCAACC CATTTTTTAA TGGGTTGGTC TAATGATTGG ACGGGTCAAT TACCCGCCCA 28688 .......... .......... .......... .......... .......... .......... 326 AACATAAACG GTTTGGGGGG GTTGGTCTTG ATTTTGCCAC CCCTAACTCC TGTGGGTGCT 28748 .......... .......... .......... .......... .......... .......... 326 AGAAAGAATG ATGTGGGGTT GCAGGAAGGA TAGTTTTGAT AATTAGCATC ATGGTCTCTC 28808 .......... .......... .......... .......... .......... .......... 326 TACTTATGTT ATGTCACTTT TCCCCTCATC TCCTAAGGTG AAAAAACGAT TGGATTCACT 28868 .......... .......... .......... .......... .......... .......... 326 TAGAAGTAAC TTCATAGGGA AAGGAAACGA AGAGAACAGA TGTTCACCTT GTGGGATGGA 28928 .......... .......... .......... .......... .......... .......... 326 AATTTTTGAT CTCTAGTTAA ATACTGGTGG AAATGCCGAA AGGACAAAAT TTCATCTGGT 28988 .......... .......... .......... .......... .......... .......... 326 TAAATGGGAG TCTGTGAATA GGAGTAAAAT GCAAGAGGAC TTGGAGTCAG GAACTCAAAT 29048 .......... .......... .......... .......... .......... .......... 326 TAGATAATAG AAGTCTTCTG GAAATTGTTG TGGATGTTGA ATGATGGGAC GGATGCTTTG 29108 .......... .......... .......... .......... .......... .......... 326 TGGTAGAGGG TCATTGTTAC TAAATATGGC AAAAAATAGA TATTAAGATC CCAGAATAGT 29168 .......... .......... .......... .......... .......... .......... 326 TGGTTCTCTC TTTGGGTTGC AGCTCGGAAG CAGATCATGA CTCTATGGGG TGATTTTGAA 29228 .......... .......... .......... .......... .......... .......... 326 ATAGCATTAA GTTGAAATTT GGTGATGAGT GAAAAAACAA GAATTGGACA GATTCCCAAG 29288 .......... .......... .......... .......... .......... .......... 326 CAAGCGGGGC TGAGTTTGAA GAGGATCATT TTGGGGGACA ATGATGAACT TCTTAAGGGT 29348 .......... .......... .......... .......... .......... .......... 326 CAGTTCCTAG CACTTTTAGC CTAGTTATGG ACGAGGAATG CTTAATTGCT GCCTGCTTTT 29408 .......... .......... .......... .......... .......... .......... 326 CTAATTTAGG GGGGGGGGGG TTTAGATCAA GGTGAGGACA GAAGAAACTG TGGATGTAAA 29468 .......... .......... .......... .......... .......... .......... 326 TACCCGTCAG TATTGCATGG ATAGTTTTCT CGAAAGAAGT CAGAGATGTT TTGAAGACAG 29528 .......... .......... .......... .......... .......... .......... 326 AAAGGATTCC ACTTCTTATG TTAAGCCATC TATGTATTCA GAATTTAGTC TTTTGTGTTG 29588 .......... .......... .......... .......... .......... .......... 326 AAAGAGAATG TAACTAGGAT TCTAAAAACA ATGGACTTGT TTGTTTCTTT ATGATGTAGG 29648 | .......... .......... .......... .......... .......... .........G 327 ACTGGGCATG TTCTTTGCTT GTACTGAATA TTAGTACCAT CTTGGTACCT TTATTGATAA 29708 | | AAAAG..... .......... .......... .......... .......... .......... 332 TACTTCTTAC CTTTTAGAAA AAAGTGCTCT CTTTGACATG TTAAGCTTTT AGATGTGATG 29768 .......... .......... .......... .......... .......... .......... 332 TCCACATAAT TCAACTATGA GTAAGTAAGC ATGGAAGTTA AAGGAGATGT TGAATTGTGA 29828 .......... .......... .......... .......... .......... .......... 332 ATAACATATG CATAGGTGAG ACTTTTTCTA AACTTTATTT TACAAGAAGT GATGCTTTGA 29888 .......... .......... .......... .......... .......... .......... 332 AGATAAATCA AGTCCTATCA AGCAGATAAA GTTGATTTTT TTGGGTACTT TTGTATTTTT 29948 .......... .......... .......... .......... .......... .......... 332 GGTGTAAAGG AACATGTGTA GAAAGATCAT GATTTAAGTT TTGATGTTTT AGACTCCTTG 30008 .......... .......... .......... .......... .......... .......... 332 TAGATGATAG AGGAGCTATA AGTTTGGTCT CTTTACAATT CTGTAATCAG GGAGGATTAT 30068 .......... .......... .......... .......... .......... .......... 332 ACTTTCTTTG TATAGTATTG CTATTTATAT AAGATATGTT AACTGTTTCA CAAAAGAAGT 30128 .......... .......... .......... .......... .......... .......... 332 GATGCTTCTA GTTAAACATT GGGGAGACCG GAAGATTATA GCAAAGCTAT CAAACATTGA 30188 .......... .......... .......... .......... .......... .......... 332 TATATATTTG AACTATGGGC TATTCTGAAA TAAATTAATT ATTAGAGAGC ATTATCTTCT 30248 .......... .......... .......... .......... .......... .......... 332 CTATTTGTTC TCTAAGAAGA AAACACTGAG GATGCTATCC AGTTGGTAGA CTTTTTAGGA 30308 .......... .......... .......... .......... .......... .......... 332 TATCTGTAAT TAGTTTTTTT CCATTTCATT GTTGATATCT TTTTGGAGAT GGCCAGCATA 30368 .......... .......... .......... .......... .......... .......... 332 ACCCTTAATT CTGAGGAATA CGATTACCAG TTTAAAAAAA AAAAGATTAT TCCTCTCATG 30428 .......... .......... .......... .......... .......... .......... 332 TAGGTCATAC GTCTGAATTG CAATCTGAAG CGGAACAATT GCCATCTGTG AAGCCAGAGC 30488 .......... .......... .......... .......... .......... .......... 332 TACTTCAGGT TGAAGCTGAA GTAAACAAGT CTGAAGTGGC TGACAAGGGT CTAGACACTG 30548 .......... .......... .......... .......... .......... .......... 332 AGATATCTGT CTTGGATGAG ATTTTGTCCG TTGAAGCAGA AGGATCAATA TCAAGATTGG 30608 .......... .......... .......... .......... .......... .......... 332 ATGTGGATAA TGATGGTGCA CGTCAAGAGA ATGACGTAAC AGACACATTT CTTGCTTAAC 30668 .......... .......... .......... .......... .......... .......... 332 ACAGTTCTAG ATTTCCTTCA TTTGATAAGT TAAAGTGGAG TTATCCATTT TTTTGAATAC 30728 .......... .......... .......... .......... .......... .......... 332 TGCATCAAGT ATAGTGATCT TTTTTATGCT TTTTTTCTAA ACATCTGATG CAGGGATGGG 30788 .......... .......... .......... .......... .......... .......... 332 CTGTTACTGG TGGCGGTGAA GTAATTGTAG AACGATTTCA TGATCTCATC CCTGATATGG 30848 .......... .......... .......... .......... .......... .......... 332 CTCTTACTTT CCCATTTGAA CTCGACCCCT TTCAAAAGGA GGTATAAATC TATGTTTTAT 30908 .......... .......... .......... .......... .......... .......... 332 GTTGTGTTTT TTAATGCTGA TGTGGAACTT GGTATCTCTG CCTTATTTAA TCTTATGTCC 30968 .......... .......... .......... .......... .......... .......... 332 CTTAATTGTT GGGTAAATAC ATGCTTTCAA TCTATGTTGC TTAGACTCTT CAAAAATGTC 31028 ||||||||| |||||||||| |||||||||| .......... .......... .......... .CTATGTTGC TTAGACTCTT CAAAAATGTC 361 GACGGGTGTG TGTCGGATCC TCCAAAAAAT AGTGTATTTT T-AAAGATCC GAC----GTG 31083 |||||||| | |||| ||||| ||| |||||| |||||||||| | || |||| ||| ||| GACGGGTGCG TGTCAGATCC TCC-AAAAAT AGTGTATTTT TGAAGGATCT GACACGGGTG 420 CAGCAACATT TTTGGAGAGT CCGAGCAACT TAGCTTTCAA TCATGGGCCC CATGTTTTAG 31143 | |||||||| |||||||||| || ||||||| ||| CGGCAACATT TTTGGAGAGT CCAAGCAACT TAG....... .......... .......... 453 TCGGATGATG TTCCATTGGC ATGAATGGCG AAGTGTTAAT TTTGAACATA ATAGGCTGAG 31203 .......... .......... .......... .......... .......... .......... 453 TTCTGTTTGC TTTTTTATTA ACTTGAAACG ATTTGTTGTG TTTCTTTTTC CTTTTCATTT 31263 .......... .......... .......... .......... .......... .......... 453 CAGGCATATA TATGCCTGTC GAGCTGTTAA AAAATTATGG TCCTTGTGAT TGCATTAATT 31323 .......... .......... .......... .......... .......... .......... 453 GCAGGCCATC TATCATCTTG AAAAAGGGAA CTCTGTCTTT GTTGCTGCTC ATACATCTGC 31383 .......... .......... .......... .......... .......... .......... 453 TGGGAAGACT GTTGTGGCTG AATATGCATT TGCTTTGGCA GCTAAAGTAT GGATTCTCTT 31443 .......... .......... .......... .......... .......... .......... 453 TATATCATGG ATTTTATACT ATTTGACTCT TGTTTTGGTT ATAAAAGAAT ATATTAAAAA 31503 .......... .......... .......... .......... .......... .......... 453 TTTTATATTG ATATCTAAAG TATAATCTTC TTCTTTGCTC ATAAATAAAA TGTCTTCTCT 31563 .......... .......... .......... .......... .......... .......... 453 TTTACATATC CTATTTATAA GTTCCTTTAC AACTTTTTGA GTCAATACTG TCCAAATTTT 31623 .......... .......... .......... .......... .......... .......... 453 CTCGTCTTTA TTTGTCAACA GGTCTGCACC AAATTTATGT TTTTTTATTG TGTGCTGCAG 31683 .......... .......... .......... .......... .......... .......... 453 CATTGTACCA GGGCTGTATA TACAGCTCCA ATCAAAACAA TCAGCAATCA GAAATACAGG 31743 .......... .......... .......... .......... .......... .......... 453 GATTTTTGTG GGAAGTTTGA TGTTGGCCTT CTCACAGGTG ATATAAGCAT AAGACCTGAG 31803 ||| | | | || | |||| | .......... .......... .......... .......GTG AAAAGATCAA ACAACCT-AT 475 GCCTCTTGTC TTATAATGAC CACTGAGATA TTAAGGTCAA TGCTTTATAG AGGGGCTGAT 31863 || ||| GCTTCTG... .......... .......... .......... .......... .......... 482 ATGATTCGGG ATATAGAATG GGTAATTATT AAATATTTTG CTCTGCTCAT TTCACTTCTA 31923 .......... .......... .......... .......... .......... .......... 482 CAACCTTTCC AGTACTTGAG ATAATTTGGT TGGTTACTGG TATTTTTTTG TTGCGAGTGT 31983 .......... .......... .......... .......... .......... .......... 482 AGGTTATATT TGATGAAGTG CATTATGTCA ATGATGTTGA AAGAGGTGTT GTTTGGGAAG 32043 .......... .......... .......... .......... .......... .......... 482 AAGTTATCAT TATGCTCCCA AGACATATCA ACTTTGTCCT CCTTTCAGCT ACGGTGGGTC 32103 .......... .......... .......... .......... .......... .......... 482 TTGATATTTT AGTCACTATA CTTTGTGCTT TGGATCAGTA CTCTTAATGA AGGTATGAGA 32163 .......... .......... .......... .......... .......... .......... 482 GTTAAAGACA CAACAAAAAG ATGTGTAAGG ATGCATGAGA CAAATGTCTT GCACCTGCAC 32223 .......... .......... .......... .......... .......... .......... 482 TTTCTTATAC AAACTTTTCT ATGTATAACT TCACATTTGA TCAACACAGG ACACTGATAT 32283 .......... .......... .......... .......... .......... .......... 482 GTAGCGTAGA ACAACTTCTA ACTATTAAGC TTAGCAAATC TAACATTCTA CCTGAAGTCA 32343 .......... .......... .......... .......... .......... .......... 482 GTGCCCCCTG GTCTAATGTC GATGCAACTT ATTCGATGAT GGACGTGGTA AATATGTTTG 32403 .......... .......... .......... .......... .......... .......... 482 GATAATCATT TGACATTATG AATCTAGTGA CAATGTCTCT TGAGAGTATC TTTTCTGTGA 32463 .......... .......... .......... .......... .......... .......... 482 GAATCTTGTA TGTATTCGAT TCTCTCTTTA AACTCTGAAC TTGATGCAAT ATCAGGTGCA 32523 || || .......... .......... .......... .......... .......... .....GTTCA 487 GCTTG 32528 | || TCCTG 492 hqPGS_C06HBa0054K13.1-12+_SGN-E255922+ (31000 31116) Total number of EST alignments reported: 23 ________________________________________________________________________________ Predicted gene locations (4) in segment 1 to 43325: PGL 1 (+ strand): 14679 16562 AGS-1 (14679 14729,14789 16562) SCR (e 0.833 d 0.000 a 0.000,e 0.969) Exon 1 14679 14729 ( 51 n); score: 0.833 Intron 1 14730 14788 ( 59 n); Pd: 0.000 Pa: 0.000 Exon 2 14789 16562 (1774 n); score: 0.969 PGS (14679 14729,14789 15235) SGN-E391539+ PGS (14679 14729,14789 15212) SGN-E349274- PGS (14679 14729,14789 15212) SGN-E356171- PGS (14694 14729,14789 15212) SGN-E356678- PGS (14789 15212) SGN-E350222- PGS (14835 15212) SGN-E351886- PGS (14968 15731) SGN-E211563- PGS (15002 15400) SGN-E200850- PGS (15134 15704) SGN-E201786- PGS (15319 15946) SGN-E209835- PGS (15344 15886) SGN-E299938- PGS (15349 15986) SGN-E205887- PGS (15371 15946) SGN-E209830- PGS (15409 16101) SGN-E353811- PGS (15852 16562) SGN-E331947- 3-phase translation of AGS-1 (+strand): . . . . . . : 14679 ATCATCCAGATATACAATGAATTTACAACACTCCCCCTTGGATATCCATAG : GAAAAAGAG I I Q I Y N E F T T L P L G Y P - : E K E S S R Y T M N L Q H S P L D I H R : K K S H P D I Q - I Y N T P P W I S I : G K R . . . . . . 14798 TACACATATCTCATAATACGCTTTGAATGTTGCCTCGTTAAAAACCTTACCATGAAAACC Y T Y L I I R F E C C L V K N L T M K T T H I S - Y A L N V A S L K T L P - K P V H I S H N T L - M L P R - K P Y H E N . . . . . . 14858 CAACTTGGGACAAAACCATAGTTAAGGAAAAGAGTACAACGCGTATTTCGCTCCCCCTGA Q L G T K P - L R K R V Q R V F R S P - N L G Q N H S - G K E Y N A Y F A P P D P T W D K T I V K E K S T T R I S L P L . . . . . . 14918 TGAAAACTTTACTTGATATCTCGGAGACGGCGCATTCCAATCTTGTATCTCAACTTCTCA - K L Y L I S R R R R I P I L Y L N F S E N F T - Y L G D G A F Q S C I S T S Q M K T L L D I S E T A H S N L V S Q L L . . . . . . 14978 AATGTTGATGTTGGCAATGCCTTAGTGAATAAATCAGCAAGATTATCACCTGAACGAATT N V D V G N A L V N K S A R L S P E R I M L M L A M P - - I N Q Q D Y H L N E F K C - C W Q C L S E - I S K I I T - T N . . . . . . 15038 TGTTGAACTTCTATCTCACCATTTTGTTGAAGATCATACGTGAAAAAGAACTTTGGTGAG C - T S I S P F C - R S Y V K K N F G E V E L L S H H F V E D H T - K R T L V R L L N F Y L T I L L K I I R E K E L W - . . . . . . 15098 ATATGCTTTGTCCGGTCTCCTTTGATGTATCCTCCTTTCAATTGAACTATACATGCAGCA I C F V R S P L M Y P P F N - T I H A A Y A L S G L L - C I L L S I E L Y M Q H D M L C P V S F D V S S F Q L N Y T C S . . . . . . 15158 TTATCTTCGTACATTGTGGTTGGTATATTCTTTTTCAAAGAAAAACCACACATTTTCTGA L S S Y I V V G I F F F K E K P H I F - Y L R T L W L V Y S F S K K N H T F S E I I F V H C G W Y I L F Q R K T T H F L . . . . . . 15218 ATATGATGGGTCATTGATCTCAACCAGACGCACTCACGACTTGCTTCATGGATGGCTATT I - W V I D L N Q T H S R L A S W M A I Y D G S L I S T R R T H D L L H G W L L N M M G H - S Q P D A L T T C F M D G Y . . . . . . 15278 ATTTCTGCATGATTTGAAGAAGTGGCTACCAACGTTTGCTTCATTGATCGCCAAGATATT I S A - F E E V A T N V C F I D R Q D I F L H D L K K W L P T F A S L I A K I L Y F C M I - R S G Y Q R L L H - S P R Y . . . . . . 15338 GTCATGTCTCCACATGTAAACAAATATCCTGTTTGTGATCAAGCTTTATGAGGATCTGAT V M S P H V N K Y P V C D Q A L - G S D S C L H M - T N I L F V I K L Y E D L I C H V S T C K Q I S C L - S S F M R I - . . . . . . 15398 AAATACCGTGCATCTGCGTAACCAATCAGTTCTGATTTGGATTCATTGGAATAGAATAAA K Y R A S A - P I S S D L D S L E - N K N T V H L R N Q S V L I W I H W N R I N - I P C I C V T N Q F - F G F I G I E - . . . . . . 15458 CCCATGTGCATGGTCCCTCGAAGATATCGAAATATGTGTTTAACACCATTCCAATGTCTT P M C M V P R R Y R N M C L T P F Q C L P C A W S L E D I E I C V - H H S N V F T H V H G P S K I S K Y V F N T I P M S . . . . . . 15518 TTTGTTGGGGAGGAACTGAATCTTGCTAGTAGACTTACTGCAAAATAGATATCTGGTCGA F V G E E L N L A S R L T A K - I S G R L L G R N - I L L V D L L Q N R Y L V E F C W G G T E S C - - T Y C K I D I W S . . . . . . 15578 GTATTGTTAGCAAGGTACATTAGTGCCCCGATCGCACTAAGATAAGGAGTTTCATCACCA V L L A R Y I S A P I A L R - G V S S P Y C - Q G T L V P R S H - D K E F H H Q S I V S K V H - C P D R T K I R S F I T . . . . . . 15638 AGAAGCTCTTCATCATTCTCTTGAGGTCGAAATGGATCTGTATTGATGTCAAGCGATCTT R S S S S F S - G R N G S V L M S S D L E A L H H S L E V E M D L Y - C Q A I L K K L F I I L L R S K W I C I D V K R S . . . . . . 15698 ACCACCATTGGAGTACTCAATGGATGTGAGTTATCCATGTAAAAACGCTTTAGTATCTTT T T I G V L N G C E L S M - K R F S I F P P L E Y S M D V S Y P C K N A L V S F Y H H W S T Q W M - V I H V K T L - Y L . . . . . . 15758 TCTGTGTACGTTGATTGATGAACAAGTATTCCATTTGACAAATTCTCAATCTGTAGGCCA S V Y V D - - T S I P F D K F S I C R P L C T L I D E Q V F H L T N S Q S V G Q F C V R - L M N K Y S I - Q I L N L - A . . . . . . 15818 AGATAAAATTTTGTCTTGCCGAGATCTTTCATTTCAAATTCTTTTTTCAGACACTCAACA R - N F V L P R S F I S N S F F R H S T D K I L S C R D L S F Q I L F S D T Q Q K I K F C L A E I F H F K F F F Q T L N . . . . . . 15878 GCTTTTAAAAGCTCTTTATGAGTGCCAATGATGTTCAAACCATCAACATACACAACTATT A F K S S L - V P M M F K P S T Y T T I L L K A L Y E C Q - C S N H Q H T Q L L S F - K L F M S A N D V Q T I N I H N Y . . . . . . 15938 ATTACAAATTAAGACCCCGACTGTTTAATGAAAATGCAGGGACAAATCGGGTCATTTTTG I T N - D P D C L M K M Q G Q I G S F L L Q I K T P T V - - K C R D K S G H F C Y Y K L R P R L F N E N A G T N R V I F . . . . . . 15998 TACCCTTTCTTTAACAAATATTCACTCAGGCGATTGTACCACATCCTTCCTGATTGTTTC Y P F F N K Y S L R R L Y H I L P D C F T L S L T N I H S G D C T T S F L I V S V P F L - Q I F T Q A I V P H P S - L F . . . . . . 16058 AATCCATACAGAGATTTCTGAAGTTTTATTGAACAAGTTTCTCTTGAATCTTTGTATGCT N P Y R D F - S F I E Q V S L E S L Y A I H T E I S E V L L N K F L L N L C M L Q S I Q R F L K F Y - T S F S - I F V C . . . . . . 16118 TCAGGCACTTTGAATGCTTTAGGAATTTTCATGAAAATGTTGTGGTCCAATGAGCCATAT S G T L N A L G I F M K M L W S N E P Y Q A L - M L - E F S - K C C G P M S H I F R H F E C F R N F H E N V V V Q - A I . . . . . . 16178 AGATAGGCTGTGACAACGTCGATTAGACGCATTTCAAGTTTTTCATGAACTACCAGATTT R - A V T T S I R R I S S F S - T T R F D R L - Q R R L D A F Q V F H E L P D L - I G C D N V D - T H F K F F M N Y Q I . . . . . . 16238 ATGAGATATCTGAAGGTGATTGCATCTACCACTGGAGAATATGTCTCCATATAATAAATG M R Y L K V I A S T T G E Y V S I - - M - D I - R - L H L P L E N M S P Y N K C Y E I S E G D C I Y H W R I C L H I I N . . . . . . 16298 TTAGGTCTTTGAGAAAAACCTTGAGCAACGAGTCGGGCCTTATATCTCATGACTTCACCT L G L - E K P - A T S R A L Y L M T S P - V F E K N L E Q R V G P Y I S - L H L V R S L R K T L S N E S G L I S H D F T . . . . . . 16358 TTCTCATTTCTTTTTCGTACAAAAACCCATTTGTACCCCACTGGCTTGATACCTTCAGGT F S F L F R T K T H L Y P T G L I P S G S H F F F V Q K P I C T P L A - Y L Q V F L I S F S Y K N P F V P H W L D T F R . . . . . . 16418 GTTTGGATTATCGGTCCAAAAACTTCACATTTTTCTAGTGAAGACAATTCAGCTTGAATT V W I I G P K T S H F S S E D N S A - I F G L S V Q K L H I F L V K T I Q L E L C L D Y R S K N F T F F - - R Q F S L N . . . . . . 16478 GCATCCTTCCATTTTGGCCAATCATTTCTCTGTCTACATTCGTGAACAGATTTTGGCTCA A S F H F G Q S F L C L H S - T D F G S H P S I L A N H F S V Y I R E Q I L A Q C I L P F W P I I S L S T F V N R F W L . . . 16538 AAATCTTCATCTTGTTGCATTATTT K S S S C C I I N L H L V A L F K I F I L L H Y Maximal non-overlapping open reading frames (>= 64 codons): >C06HBa0054K13.1-12+_PGL-1_AGS-1_PPS_1 (16204 16455) (frame '0'; 249 bp, 83 residues) 1 THFKFFMNYQ IYEISEGDCI YHWRICLHII NVRSLRKTLS NESGLISHDF TFLISFSYKN 61 PFVPHWLDTF RCLDYRSKNF TFF- >C06HBa0054K13.1-12+_PGL-1_AGS-1_PPS_2 (15123 15356) (frame '2'; 231 bp, 77 residues) 1 CILLSIELYM QHYLRTLWLV YSFSKKNHTF SEYDGSLIST RRTHDLLHGW LLFLHDLKKW 61 LPTFASLIAK ILSCLHM- >C06HBa0054K13.1-12+_PGL-1_AGS-1_PPS_3 (15684 15908) (frame '2'; 222 bp, 74 residues) 1 CQAILPPLEY SMDVSYPCKN ALVSFLCTLI DEQVFHLTNS QSVGQDKILS CRDLSFQILF 61 SDTQQLLKAL YECQ- AGS-2 (15397 15834,15951 15996) SCR (e 0.858 d 0.000 a 0.000,e 0.739) Exon 1 15397 15834 ( 438 n); score: 0.858 Intron 1 15835 15950 ( 116 n); Pd: 0.000 Pa: 0.000 Exon 2 15951 15996 ( 46 n); score: 0.739 PGS (15397 15834,15951 15996) SGN-E208613- 3-phase translation of AGS-2 (+strand): . . . . . . 15397 TAAATACCGTGCATCTGCGTAACCAATCAGTTCTGATTTGGATTCATTGGAATAGAATAA - I P C I C V T N Q F - F G F I G I E - K Y R A S A - P I S S D L D S L E - N K N T V H L R N Q S V L I W I H W N R I . . . . . . 15457 ACCCATGTGCATGGTCCCTCGAAGATATCGAAATATGTGTTTAACACCATTCCAATGTCT T H V H G P S K I S K Y V F N T I P M S P M C M V P R R Y R N M C L T P F Q C L N P C A W S L E D I E I C V - H H S N V . . . . . . 15517 TTTTGTTGGGGAGGAACTGAATCTTGCTAGTAGACTTACTGCAAAATAGATATCTGGTCG F C W G G T E S C - - T Y C K I D I W S F V G E E L N L A S R L T A K - I S G R F L L G R N - I L L V D L L Q N R Y L V . . . . . . 15577 AGTATTGTTAGCAAGGTACATTAGTGCCCCGATCGCACTAAGATAAGGAGTTTCATCACC S I V S K V H - C P D R T K I R S F I T V L L A R Y I S A P I A L R - G V S S P E Y C - Q G T L V P R S H - D K E F H H . . . . . . 15637 AAGAAGCTCTTCATCATTCTCTTGAGGTCGAAATGGATCTGTATTGATGTCAAGCGATCT K K L F I I L L R S K W I C I D V K R S R S S S S F S - G R N G S V L M S S D L Q E A L H H S L E V E M D L Y - C Q A I . . . . . . 15697 TACCACCATTGGAGTACTCAATGGATGTGAGTTATCCATGTAAAAACGCTTTAGTATCTT Y H H W S T Q W M - V I H V K T L - Y L T T I G V L N G C E L S M - K R F S I F L P P L E Y S M D V S Y P C K N A L V S . . . . . . 15757 TTCTGTGTACGTTGATTGATGAACAAGTATTCCATTTGACAAATTCTCAATCTGTAGGCC F C V R - L M N K Y S I - Q I L N L - A S V Y V D - - T S I P F D K F S I C R P F L C T L I D E Q V F H L T N S Q S V G . . : . . . . 15817 AAGATAAAATTTTGTCTT : ACCCCGACTGTTTAATGAAAATGCAGGGACAAATCGGGTCAT K I K F C L : T P T V - - K C R D K S G H R - N F V L : P R L F N E N A G T N R V I Q D K I L S : Y P D C L M K M Q G Q I G S . 15993 TTTT F F F Maximal non-overlapping open reading frames (>= 64 codons): >C06HBa0054K13.1-12+_PGL-1_AGS-2_PPS_1 (15684 15834,15951 15994) (frame '0'; 195 bp, 65 residues) 1 CQAILPPLEY SMDVSYPCKN ALVSFLCTLI DEQVFHLTNS QSVGQDKILS YPDCLMKMQG 61 QIGSF PGL 2 (- strand): 18418 17873 AGS-1 (18418 17873) SCR (e 0.906) Exon 1 18418 17873 ( 546 n); score: 0.906 PGS (18418 17873) SGN-E206250+ PGS (18308 17940) SGN-E332350+ 3-phase translation of AGS-1 (-strand): . . . . . . 18418 AAATCCCCAGTTGTCAGTTGGATTCAAGATGAGTAATGGAGATGTATGCCTTCTTGATAG K S P V V S W I Q D E - W R C M P S - - N P Q L S V G F K M S N G D V C L L D S I P S C Q L D S R - V M E M Y A F L I . . . . . . 18358 TGCTACAACGCATACAATATTAAAAGAAAAGAAATACTTTTCTAATTTGGTTATGAAAAT C Y N A Y N I K R K E I L F - F G Y E N A T T H T I L K E K K Y F S N L V M K M V L Q R I Q Y - K K R N T F L I W L - K . . . . . . 18298 GGCATATGTCAACACAATATCAGGTAGTACAAAATTAATTGAGGGCTCTGGAAGAGCGAC G I C Q H N I R - Y K I N - G L W K S D A Y V N T I S G S T K L I E G S G R A T W H M S T Q Y Q V V Q N - L R A L E E R . . . . . . 18238 CTTATTACTACCTGGAGGGACAATATTAAGCATTGATAATGCATTATATTGTAGTAAGTC L I T T W R D N I K H - - C I I L - - V L L L P G G T I L S I D N A L Y C S K S P Y Y Y L E G Q Y - A L I M H Y I V V S . . . . . . 18178 TCAAAGAAACTTATTAAGTTTCAAAGTTATTCGCCAAAATGGCTATCATGTTGAGACGAC S K K L I K F Q S Y S P K W L S C - D D Q R N L L S F K V I R Q N G Y H V E T T L K E T Y - V S K L F A K M A I M L R R . . . . . . 18118 TAATGAAGGAAAGGTTGAATACCTTTACATTACTACAATTAATGTAGAGAAGAAAATTGT - - R K G - I P L H Y Y N - C R E E N C N E G K V E Y L Y I T T I N V E K K I V L M K E R L N T F T L L Q L M - R R K L . . . . . . 18058 GCATGAAAAATCACCTGCATTTTCTTCTGGGTTGTACTATACAAGTATAAGTACAGTCGA A - K I T C I F F W V V L Y K Y K Y S R H E K S P A F S S G L Y Y T S I S T V E C M K N H L H F L L G C T I Q V - V Q S . . . . . . 17998 ATCACATGCCGTAGTAAACAAAAGGTTTACTAATTTTAATGATTTTATTATTTGGCATGA I T C R S K Q K V Y - F - - F Y Y L A - S H A V V N K R F T N F N D F I I W H D N H M P - - T K G L L I L M I L L F G M . . . . . . 17938 CCAGTTGGGCCATCCCAGATTTAATATGATGCGCAAAATCATTGAGAATTCACATGGGCA P V G P S Q I - Y D A Q N H - E F T W A Q L G H P R F N M M R K I I E N S H G H T S W A I P D L I - C A K S L R I H M G . 17878 CACCTT H L T T P Maximal non-overlapping open reading frames (>= 64 codons): >C06HBa0054K13.1-12-_PGL-2_AGS-1_PPS_1 (18417 17875) (frame '2'; 543 bp, 181 residues) 1 NPQLSVGFKM SNGDVCLLDS ATTHTILKEK KYFSNLVMKM AYVNTISGST KLIEGSGRAT 61 LLLPGGTILS IDNALYCSKS QRNLLSFKVI RQNGYHVETT NEGKVEYLYI TTINVEKKIV 121 HEKSPAFSSG LYYTSISTVE SHAVVNKRFT NFNDFIIWHD QLGHPRFNMM RKIIENSHGH 181 T 3-phase translation of AGS-1 (+strand): . . . . . . 17873 AAGGTGTGCCCATGTGAATTCTCAATGATTTTGCGCATCATATTAAATCTGGGATGGCCC K V C P C E F S M I L R I I L N L G W P R C A H V N S Q - F C A S Y - I W D G P G V P M - I L N D F A H H I K S G M A . . . . . . 17933 AACTGGTCATGCCAAATAATAAAATCATTAAAATTAGTAAACCTTTTGTTTACTACGGCA N W S C Q I I K S L K L V N L L F T T A T G H A K - - N H - N - - T F C L L R H Q L V M P N N K I I K I S K P F V Y Y G . . . . . . 17993 TGTGATTCGACTGTACTTATACTTGTATAGTACAACCCAGAAGAAAATGCAGGTGATTTT C D S T V L I L V - Y N P E E N A G D F V I R L Y L Y L Y S T T Q K K M Q V I F M - F D C T Y T C I V Q P R R K C R - F . . . . . . 18053 TCATGCACAATTTTCTTCTCTACATTAATTGTAGTAATGTAAAGGTATTCAACCTTTCCT S C T I F F S T L I V V M - R Y S T F P H A Q F S S L H - L - - C K G I Q P F L F M H N F L L Y I N C S N V K V F N L S . . . . . . 18113 TCATTAGTCGTCTCAACATGATAGCCATTTTGGCGAATAACTTTGAAACTTAATAAGTTT S L V V S T - - P F W R I T L K L N K F H - S S Q H D S H F G E - L - N L I S F F I S R L N M I A I L A N N F E T - - V . . . . . . 18173 CTTTGAGACTTACTACAATATAATGCATTATCAATGCTTAATATTGTCCCTCCAGGTAGT L - D L L Q Y N A L S M L N I V P P G S F E T Y Y N I M H Y Q C L I L S L Q V V S L R L T T I - C I I N A - Y C P S R - . . . . . . 18233 AATAAGGTCGCTCTTCCAGAGCCCTCAATTAATTTTGTACTACCTGATATTGTGTTGACA N K V A L P E P S I N F V L P D I V L T I R S L F Q S P Q L I L Y Y L I L C - H - - G R S S R A L N - F C T T - Y C V D . . . . . . 18293 TATGCCATTTTCATAACCAAATTAGAAAAGTATTTCTTTTCTTTTAATATTGTATGCGTT Y A I F I T K L E K Y F F S F N I V C V M P F S - P N - K S I S F L L I L Y A L I C H F H N Q I R K V F L F F - Y C M R . . . . . . 18353 GTAGCACTATCAAGAAGGCATACATCTCCATTACTCATCTTGAATCCAACTGACAACTGG V A L S R R H T S P L L I L N P T D N W - H Y Q E G I H L H Y S S - I Q L T T G C S T I K K A Y I S I T H L E S N - Q L . 18413 GGATTT G F D G I Maximal non-overlapping open reading frames (>= 64 codons): >C06HBa0054K13.1-12+_PGL-2_AGS-1_PPS_1 (18179 18418) (frame '1'; 240 bp, 80 residues) 1 DLLQYNALSM LNIVPPGSNK VALPEPSINF VLPDIVLTYA IFITKLEKYF FSFNIVCVVA 61 LSRRHTSPLL ILNPTDNWGF PGL 3 (- strand): 21227 19151 AGS-1 (19716 19151) SCR (e 0.975) Exon 1 19716 19151 ( 566 n); score: 0.975 PGS (19716 19151) SGN-E325909+ 3-phase translation of AGS-1 (-strand): . . . . . . 19716 AACACGTTATCAGCACGAAATTGCTACTTGCAAAGGTACTATATAAATATTTTTATTTAA N T L S A R N C Y L Q R Y Y I N I F I - T R Y Q H E I A T C K G T I - I F L F N H V I S T K L L L A K V L Y K Y F Y L . . . . . . 19656 TTCACATATTCTCTCATAATTTTCATTATGTCGAATTTATCCAAACTTGAGTTTGTGGCA F T Y S L I I F I M S N L S K L E F V A S H I L S - F S L C R I Y P N L S L W H I H I F S H N F H Y V E F I Q T - V C G . . . . . . 19596 TTAGATATTTCTGGAAAGAATTATCTTTCATGGGTACTCGATGCTGAGATTCACTTGGCT L D I S G K N Y L S W V L D A E I H L A - I F L E R I I F H G Y S M L R F T W L I R Y F W K E L S F M G T R C - D S L G . . . . . . 19536 GCTAAAGGTCTTGATGCCACTATTACTCAGGGAAAAGAAGCATCCAGTCAAGATAAGGCG A K G L D A T I T Q G K E A S S Q D K A L K V L M P L L L R E K K H P V K I R R C - R S - C H Y Y S G K R S I Q S R - G . . . . . . 19476 AAGGCTATGATTTTCCTTCGTTATCATCTTGATGAGGGCCTGAAGATTGAATATCTGACG K A M I F L R Y H L D E G L K I E Y L T R L - F S F V I I L M R A - R L N I - R E G Y D F P S L S S - - G P E D - I S D . . . . . . 19416 GTGAAATATCCACTTGAATAGTGGACTGATTTAAAGGGGAGATATGACCACCGAAAGGCA V K Y P L E - W T D L K G R Y D H R K A - N I H L N S G L I - R G D M T T E R Q G E I S T - I V D - F K G E I - P P K G . . . . . . 19356 ACAGTGTTGCCAAGAGCTCGTTATGAGTGGATGCATTTATGGTTTCAAGATTTTAAGACC T V L P R A R Y E W M H L W F Q D F K T Q C C Q E L V M S G C I Y G F K I L R P N S V A K S S L - V D A F M V S R F - D . . . . . . 19296 GTAATTGAATACAACAGAGTTGTATTCAGGATAACCTCCCAGTTGAAATTATGTGGGGAG V I E Y N R V V F R I T S Q L K L C G E - L N T T E L Y S G - P P S - N Y V G R R N - I Q Q S C I Q D N L P V E I M W G . . . . . . 19236 ACTATAAAAGATGAGAACATGTTGGAAAAGACACTTACTACTTTTCATGCCTCGAATGTG T I K D E N M L E K T L T T F H A S N V L - K M R T C W K R H L L L F M P R M - D Y K R - E H V G K D T Y Y F S C L E C . . . 19176 ATATTGCAGTAGCAATATCGTGAAAA I L Q - Q Y R E Y C S S N I V K D I A V A I S - K Maximal non-overlapping open reading frames (>= 64 codons): >C06HBa0054K13.1-12-_PGL-3_AGS-1_PPS_1 (19656 19396) (frame '1'; 258 bp, 86 residues) 1 FTYSLIIFIM SNLSKLEFVA LDISGKNYLS WVLDAEIHLA AKGLDATITQ GKEASSQDKA 61 KAMIFLRYHL DEGLKIEYLT VKYPLE- >C06HBa0054K13.1-12-_PGL-3_AGS-1_PPS_2 (19395 19165) (frame '1'; 228 bp, 76 residues) 1 WTDLKGRYDH RKATVLPRAR YEWMHLWFQD FKTVIEYNRV VFRITSQLKL CGETIKDENM 61 LEKTLTTFHA SNVILQ- 3-phase translation of AGS-1 (+strand): . . . . . . 19151 TTTTCACGATATTGCTACTGCAATATCACATTCGAGGCATGAAAAGTAGTAAGTGTCTTT F S R Y C Y C N I T F E A - K V V S V F F H D I A T A I S H S R H E K - - V S F F T I L L L Q Y H I R G M K S S K C L . . . . . . 19211 TCCAACATGTTCTCATCTTTTATAGTCTCCCCACATAATTTCAACTGGGAGGTTATCCTG S N M F S S F I V S P H N F N W E V I L P T C S H L L - S P H I I S T G R L S - F Q H V L I F Y S L P T - F Q L G G Y P . . . . . . 19271 AATACAACTCTGTTGTATTCAATTACGGTCTTAAAATCTTGAAACCATAAATGCATCCAC N T T L L Y S I T V L K S - N H K C I H I Q L C C I Q L R S - N L E T I N A S T E Y N S V V F N Y G L K I L K P - M H P . . . . . . 19331 TCATAACGAGCTCTTGGCAACACTGTTGCCTTTCGGTGGTCATATCTCCCCTTTAAATCA S - R A L G N T V A F R W S Y L P F K S H N E L L A T L L P F G G H I S P L N Q L I T S S W Q H C C L S V V I S P L - I . . . . . . 19391 GTCCACTATTCAAGTGGATATTTCACCGTCAGATATTCAATCTTCAGGCCCTCATCAAGA V H Y S S G Y F T V R Y S I F R P S S R S T I Q V D I S P S D I Q S S G P H Q D S P L F K W I F H R Q I F N L Q A L I K . . . . . . 19451 TGATAACGAAGGAAAATCATAGCCTTCGCCTTATCTTGACTGGATGCTTCTTTTCCCTGA - - R R K I I A F A L S - L D A S F P - D N E G K S - P S P Y L D W M L L F P E M I T K E N H S L R L I L T G C F F S L . . . . . . 19511 GTAATAGTGGCATCAAGACCTTTAGCAGCCAAGTGAATCTCAGCATCGAGTACCCATGAA V I V A S R P L A A K - I S A S S T H E - - W H Q D L - Q P S E S Q H R V P M K S N S G I K T F S S Q V N L S I E Y P - . . . . . . 19571 AGATAATTCTTTCCAGAAATATCTAATGCCACAAACTCAAGTTTGGATAAATTCGACATA R - F F P E I S N A T N S S L D K F D I D N S F Q K Y L M P Q T Q V W I N S T - K I I L S R N I - C H K L K F G - I R H . . . . . . 19631 ATGAAAATTATGAGAGAATATGTGAATTAAATAAAAATATTTATATAGTACCTTTGCAAG M K I M R E Y V N - I K I F I - Y L C K - K L - E N M - I K - K Y L Y S T F A S N E N Y E R I C E L N K N I Y I V P L Q . . . 19691 TAGCAATTTCGTGCTGATAACGTGTT - Q F R A D N V S N F V L I T C V A I S C - - R V Maximal non-overlapping open reading frames (>= 64 codons): none AGS-2 (21227 20908,19234 19205) SCR (e 0.902 d 0.000 a 0.000,e 0.767) Exon 1 21227 20908 ( 320 n); score: 0.902 Intron 1 20907 19235 (1673 n); Pd: 0.000 Pa: 0.000 Exon 2 19234 19205 ( 30 n); score: 0.767 PGS (21227 20908,19234 19205) SGN-E540411+ PGS (21125 20908,19234 19205) SGN-E540414- 3-phase translation of AGS-2 (-strand): . . . . . . 21227 AAAAATGGGATAATGCACAAGTACCCCTCAATCTATGCCCGAAATTTCAGAGACACACTT K N G I M H K Y P S I Y A R N F R D T L K M G - C T S T P Q S M P E I S E T H L K W D N A Q V P L N L C P K F Q R H T . . . . . . 21167 ATACTATACTAAGGTCCTATTACCTCCCTGAACTTATTTTATAAGTAATTTTCTACCCCT I L Y - G P I T S L N L F Y K - F S T P Y Y T K V L L P P - T Y F I S N F L P L Y T I L R S Y Y L P E L I L - V I F Y P . . . . . . 21107 TTTTAGCCTACGTGGCACTGGTTTGGAACAAAAAGTCAACCATCGTTGGACCCACAAGAT F - P T W H W F G T K S Q P S L D P Q D F S L R G T G L E Q K V N H R W T H K I F L A Y V A L V W N K K S T I V G P T R . . . . . . 21047 AGTGCCACGTAGGTCGAAAAGGGGTAAAAAATTATTAATAAAATAATTTCAGGGGGTAAT S A T - V E K G - K I I N K I I S G G N V P R R S K R G K K L L I K - F Q G V I - C H V G R K G V K N Y - - N N F R G - . . . . . . 20987 AGGACCTTAGTATAGTATAAGTGTGTCTCTGAGATTTCGGGTATAGGTTGAGGAGGTACT R T L V - Y K C V S E I S G I G - G G T G P - Y S I S V S L R F R V - V E E V L - D L S I V - V C L - D F G Y R L R R Y . . : . . . 20927 TGGACATTATCCCTATAAAA : TATAAAAGATGAGAACATGTTGGAAAAGAC W T L S L - N : I K D E N M L E K G H Y P Y K : I - K M R T C W K R L D I I P I K : Y K R - E H V G K D Maximal non-overlapping open reading frames (>= 64 codons): none AGS-3 (20803 20778,19991 19764) SCR (e 0.769 d 0.000 a 0.000,e 0.739) Exon 1 20803 20778 ( 26 n); score: 0.769 Intron 1 20777 19992 ( 786 n); Pd: 0.000 Pa: 0.000 Exon 2 19991 19764 ( 228 n); score: 0.739 PGS (20803 20778,19991 19764) SGN-E367848- 3-phase translation of AGS-3 (-strand): . . . : . . . 20803 GTCTTATTACCCTCTAAACTTATTTT : ATTGTTGTAAATCCATTGTATATGTAGATGATCC V L L P S K L I L : L L - I H C I C R - S S Y Y P L N L F : Y C C K S I V Y V D D P L I T L - T Y F : I V V N P L Y M - M I . . . . . . 19957 ACTAGAGTTATCCAACAATTAATTGGATTCATGTATTAGTGTTTCCAATGTGATAAGATA T R V I Q Q L I G F M Y - C F Q C D K I L E L S N N - L D S C I S V S N V I R Y H - S Y P T I N W I H V L V F P M - - D . . . . . . 19897 TCAAGGTGATATGAACCTTGATGATAACTATGTAAAATTTCAAGGTGACCTTTGACTATG S R - Y E P - - - L C K I S R - P L T M Q G D M N L D D N Y V K F Q G D L - L - I K V I - T L M I T M - N F K V T F D Y . . . . . . 19837 ATATCTCAACACTATAAATAGAGATATCATTCACCATTGTATGATATACTTGAATAAGAA I S Q H Y K - R Y H S P L Y D I L E - E Y L N T I N R D I I H H C M I Y L N K K D I S T L - I E I S F T I V - Y T - I R . . 19777 AATTATCTCCTCTA N Y L L I I S S K L S P L Maximal non-overlapping open reading frames (>= 64 codons): none PGL 4 (+ strand): 31000 31116 AGS-1 (31000 31116) SCR (e 0.833) Exon 1 31000 31116 ( 117 n); score: 0.833 PGS (31000 31116) SGN-E255922+ 3-phase translation of AGS-1 (+strand): . . . . . . 31000 CTATGTTGCTTAGACTCTTCAAAAATGTCGACGGGTGTGTGTCGGATCCTCCAAAAAATA L C C L D S S K M S T G V C R I L Q K I Y V A - T L Q K C R R V C V G S S K K - M L L R L F K N V D G C V S D P P K N . . . . . . 31060 GTGTATTTTTAAAGATCCGACGTGCAGCAACATTTTTGGAGAGTCCGAGCAACTTAG V Y F - R S D V Q Q H F W R V R A T - C I F K D P T C S N I F G E S E Q L S V F L K I R R A A T F L E S P S N L Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-1 (-strand): . . . . . . 31116 CTAAGTTGCTCGGACTCTCCAAAAATGTTGCTGCACGTCGGATCTTTAAAAATACACTAT L S C S D S P K M L L H V G S L K I H Y - V A R T L Q K C C C T S D L - K Y T I K L L G L S K N V A A R R I F K N T L . . . . . . 31056 TTTTTGGAGGATCCGACACACACCCGTCGACATTTTTGAAGAGTCTAAGCAACATAG F L E D P T H T R R H F - R V - A T - F W R I R H T P V D I F E E S K Q H F F G G S D T H P S T F L K S L S N I Maximal non-overlapping open reading frames (>= 64 codons): none ... finished at: Mon Aug 28 22:12:56 2006 ________________________________________________________________________________ Sequence 13: C06HBa0054K13.1-13, from 1 to 1574, both strands analyzed. ... started at: Mon Aug 28 22:12:56 2006 EST library file: /tmp/cxgn-bacpublish-resources-LF1h7Z/sgn_ests; matching gDNA +strand ... ... found all matches, elapsed seconds = 4 ... matches indexed, elapsed seconds = 4 HitsTableSize = 0 EST library file: /tmp/cxgn-bacpublish-resources-LF1h7Z/sgn_ests; matching gDNA -strand ... ... found all matches, elapsed seconds = 3 ... matches indexed, elapsed seconds = 3 HitsTableSize = 0 No significant EST matches were found. ... finished at: Mon Aug 28 22:13:03 2006 ________________________________________________________________________________ Sequence 14: C06HBa0054K13.1-14, from 1 to 7572, both strands analyzed. ... started at: Mon Aug 28 22:13:03 2006 EST library file: /tmp/cxgn-bacpublish-resources-LF1h7Z/sgn_ests; matching gDNA +strand ... ... found all matches, elapsed seconds = 4 ... matches indexed, elapsed seconds = 4 HitsTableSize = 11 EST library file: /tmp/cxgn-bacpublish-resources-LF1h7Z/sgn_ests; matching gDNA -strand ... ... found all matches, elapsed seconds = 4 ... matches indexed, elapsed seconds = 4 HitsTableSize = 1 ******************************************************************************** EST sequence 9 +strand 478 n (File: SGN-E286685+) 1 GAAAAAATAT CTACCCCAAA AGATATCTAA CTACTTTACA ACATTTGTAG CACATGATAT 61 TATTACATTG ATGAACCCCT TCAACTAACA TCAAACAAAT AATATTACCC TCTTTTTTTT 121 TCAAGATTTT TTACAAGAAG AAGAAGAAGA AAATGGAAGT GAATGGAAAT ATTAGACCAA 181 ATAGAAGTGA TGTTCATTTA TCAAAAGAGG AAGAAACAAA GATAGAAGAG GAAACAAGAG 241 AGTATTTTGA TGGCATTGCA CCAAAAAGAC ACACTAAACC TCAAAGAAGT GATTATTCTT 301 CAACTTATGT TGATCACATC AATCTCTACC CTTCTTCTCA TGACACAATT CCCGAAAATC 361 TCGAATTCCA ACGTCTCGAA AATGATCCTC AGAAATTGGT TTACAATGGC AGCCAAGTGA 421 CAGAGGAATT TATTGAAACA GAATATTACA AAGATCTTAA TTGCATTGAC AAGCAGCA Predicted gene structure (within gDNA segment 1 to 2384): Exon 1 111 502 ( 392 n); cDNA 1 392 ( 392 n); score: 1.000 Intron 1 503 1688 (1186 n); Pd: 0.995 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 1689 1774 ( 86 n); cDNA 393 478 ( 86 n); score: 1.000 MATCH C06HBa0054K13.1-14+ SGN-E286685+ 1.000 478 1.000 C PGS_C06HBa0054K13.1-14+_SGN-E286685+ (111 502,1689 1774) Alignment (genomic DNA sequence = upper lines): GAAAAAATAT CTACCCCAAA AGATATCTAA CTACTTTACA ACATTTGTAG CACATGATAT 170 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAAAAATAT CTACCCCAAA AGATATCTAA CTACTTTACA ACATTTGTAG CACATGATAT 60 TATTACATTG ATGAACCCCT TCAACTAACA TCAAACAAAT AATATTACCC TCTTTTTTTT 230 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATTACATTG ATGAACCCCT TCAACTAACA TCAAACAAAT AATATTACCC TCTTTTTTTT 120 TCAAGATTTT TTACAAGAAG AAGAAGAAGA AAATGGAAGT GAATGGAAAT ATTAGACCAA 290 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCAAGATTTT TTACAAGAAG AAGAAGAAGA AAATGGAAGT GAATGGAAAT ATTAGACCAA 180 ATAGAAGTGA TGTTCATTTA TCAAAAGAGG AAGAAACAAA GATAGAAGAG GAAACAAGAG 350 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATAGAAGTGA TGTTCATTTA TCAAAAGAGG AAGAAACAAA GATAGAAGAG GAAACAAGAG 240 AGTATTTTGA TGGCATTGCA CCAAAAAGAC ACACTAAACC TCAAAGAAGT GATTATTCTT 410 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTATTTTGA TGGCATTGCA CCAAAAAGAC ACACTAAACC TCAAAGAAGT GATTATTCTT 300 CAACTTATGT TGATCACATC AATCTCTACC CTTCTTCTCA TGACACAATT CCCGAAAATC 470 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAACTTATGT TGATCACATC AATCTCTACC CTTCTTCTCA TGACACAATT CCCGAAAATC 360 TCGAATTCCA ACGTCTCGAA AATGATCCTC AGGTCTACCT CCTTCTCTGC ATATGTCTGT 530 |||||||||| |||||||||| |||||||||| || TCGAATTCCA ACGTCTCGAA AATGATCCTC AG........ .......... .......... 392 TTTGTTTTAA TCAGTAGAGG CGGATTCAGG ATTTGAACTA TTAATATATT TAAACTCCAT 590 .......... .......... .......... .......... .......... .......... 392 GCCAAGCATT GAATCATAAT AGTTTTTGTA TTAGTAGGTT CCGAGTAGAT TATTTGTACA 650 .......... .......... .......... .......... .......... .......... 392 TATTAGATAT ACACATATGA TGTTTGAGCT AAAGTTAATG AATTTTGTCC AACTCTTAAC 710 .......... .......... .......... .......... .......... .......... 392 TATGCCTTGA AAATGATTTT CATGTTAATT AAGCTCCCCC CCACCCCCCA CCCCCACCCC 770 .......... .......... .......... .......... .......... .......... 392 TCATTTTTCA CTTTTGGGGT TTCTCCTTGT TAGTGAATAA TATATCAGTA GAAAATTTAG 830 .......... .......... .......... .......... .......... .......... 392 ATTTACAATT TCTAGTGATA CAGGAACTAC TTCCCACCAA AATAGTGAGA AACTTCATAA 890 .......... .......... .......... .......... .......... .......... 392 GTTTTTCATA GGGATAAGGT GCAATTAGCC TTAGACTATA CCCGAAATCC CAAAAACATA 950 .......... .......... .......... .......... .......... .......... 392 TCTTAACTAA ACTAAGATCA TATTATGATG AACTTGTTTT TTTGTATTTT TGTACACCTT 1010 .......... .......... .......... .......... .......... .......... 392 TTTGTCTTAC GTGGTATTCA AATATCTCTC ATGTGTCTCA ACTGCGTGAA GTCACGGAGT 1070 .......... .......... .......... .......... .......... .......... 392 ATACCAAGTA AGTTAAAAGG AGTATAAAAT TACAAAAATA AAATGAGTAC AGAGGTAATA 1130 .......... .......... .......... .......... .......... .......... 392 GGACTTAAGT TTAGTTAAAA GTGTAGTACT TGTACATGCC CTTTTTTCAT ATTAAAACAT 1190 .......... .......... .......... .......... .......... .......... 392 TACTATTTTA TTCTTTTCTC GCTGATTTAA TCAAAATATT TGTGGTCTTA GCCACTTAAC 1250 .......... .......... .......... .......... .......... .......... 392 AATGACTTTT ACTAGCTTGG AATTGAAGTG TAGTTGATCC ATTTGAATCA CACTTTTGTT 1310 .......... .......... .......... .......... .......... .......... 392 GATCCAATGG CTCAGAGATA GCACTTCGCT TTAAGTGTTG AGTCATGCAC AATTTTTTTT 1370 .......... .......... .......... .......... .......... .......... 392 CTCGATGTAT CAAAGAGTAC CTATGAACTA TGTTCCGATT TACTCATAAG GAAGAAAACG 1430 .......... .......... .......... .......... .......... .......... 392 GGGGACGGGG TTGGGGACCG GACTATATGA TGTGATAGTA AACAGGAACC ATTATGTAAA 1490 .......... .......... .......... .......... .......... .......... 392 AGACTTTGGT ATCTATGTTT GGTTGGATTC TTCCAAAAAC ATCGCCAGGT GTGTGTCGAA 1550 .......... .......... .......... .......... .......... .......... 392 TCCTACAAAA TGTATGTATT TTTGAAGGAT TTGACACGGA AACGGAAACA TTTTGGAGGG 1610 .......... .......... .......... .......... .......... .......... 392 TCTAAGTAAC ATAGTCGCGA ATTATAAATC ACATTAATGT CAATCAGATT CATATATCTT 1670 .......... .......... .......... .......... .......... .......... 392 TTGGTTTTGG TTTTGCAGAA ATTGGTTTAC AATGGCAGCC AAGTGACAGA GGAATTTATT 1730 || |||||||||| |||||||||| |||||||||| |||||||||| .......... ........AA ATTGGTTTAC AATGGCAGCC AAGTGACAGA GGAATTTATT 434 GAAACAGAAT ATTACAAAGA TCTTAATTGC ATTGACAAGC AGCA 1774 |||||||||| |||||||||| |||||||||| |||||||||| |||| GAAACAGAAT ATTACAAAGA TCTTAATTGC ATTGACAAGC AGCA 478 hqPGS_C06HBa0054K13.1-14+_SGN-E286685+ (111 502,1689 1774) ******************************************************************************** EST sequence 3 +strand 722 n (File: SGN-E340816+) 1 TTCAACTAAC ATCAAACAAA TAATATTACC CTCTTTTTTT TTCAAGATTT TTTACAAGAA 61 GAAGAAGAAG AAAATGGAAG TGAATGGAAA TATTAGACCA AATAGAAGTG ATGTTCATTT 121 ATCAAAAGAG GAAGAAACAA AGATAGAAGA GGAAACAAGA GAGTATTTTG ATGGCATTGC 181 ACCAAAAAGA CACACTAAAC CTCAAAGAAG TGATTATTCT TCAACTTATG TTGATCACAT 241 CAATCTCTAC CCTTCTTCTC ATGACACAAT TCCCGAAAAT CTCGAATTCC AACGTCTCGA 301 AAATGATCCT CAGAAATTGG TTTACAATGG CAGCCAAGTG ACAGAGGAAT TTATTGAAAC 361 AGAATATTAC AAAGATCTTA ATTGCATTGA CAAGCAGCAT CACACGACAG GAACAGGATT 421 TATCAAAGTG GAGAATAATG AGAACACTTT TAATATAGGA GCTGATTATA CTACTGATCC 481 AAGCCATGTT TACAAGGGGA ATCCAGCTAC TAATGATTGG ATTCCTTCTG CTGTTGATGA 541 GGTTAATTTT ATCTCAGGAA AACCACACAG AAGTGATAAC TGAAATTGAG TCTTTGATAA 601 AGACAGTATC TGCTTATTTT GTATTTCTGT GAAGCTTGGC TTCAACTTGT GTCTCTTTTG 661 TTTGGGTTGT ATTTGAATAA CATGCTATAT GAATTATTTC AAACGATTTT AATGAAAAAA 721 AA Predicted gene structure (within gDNA segment 1 to 3818): Exon 1 190 502 ( 313 n); cDNA 1 313 ( 313 n); score: 1.000 Intron 1 503 1688 (1186 n); Pd: 0.995 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 1689 1781 ( 93 n); cDNA 314 406 ( 93 n); score: 1.000 Intron 2 1782 2509 ( 728 n); Pd: 0.978 (s: 1.00), Pa: 0.994 (s: 1.00) Exon 3 2510 2644 ( 135 n); cDNA 407 541 ( 135 n); score: 1.000 Intron 3 2645 2974 ( 330 n); Pd: 1.000 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 4 2975 3151 ( 177 n); cDNA 542 719 ( 178 n); score: 0.980 MATCH C06HBa0054K13.1-14+ SGN-E340816+ 0.995 718 0.994 C PGS_C06HBa0054K13.1-14+_SGN-E340816+ (190 502,1689 1781,2510 2644,2975 3151) Alignment (genomic DNA sequence = upper lines): TTCAACTAAC ATCAAACAAA TAATATTACC CTCTTTTTTT TTCAAGATTT TTTACAAGAA 249 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCAACTAAC ATCAAACAAA TAATATTACC CTCTTTTTTT TTCAAGATTT TTTACAAGAA 60 GAAGAAGAAG AAAATGGAAG TGAATGGAAA TATTAGACCA AATAGAAGTG ATGTTCATTT 309 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAGAAGAAG AAAATGGAAG TGAATGGAAA TATTAGACCA AATAGAAGTG ATGTTCATTT 120 ATCAAAAGAG GAAGAAACAA AGATAGAAGA GGAAACAAGA GAGTATTTTG ATGGCATTGC 369 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCAAAAGAG GAAGAAACAA AGATAGAAGA GGAAACAAGA GAGTATTTTG ATGGCATTGC 180 ACCAAAAAGA CACACTAAAC CTCAAAGAAG TGATTATTCT TCAACTTATG TTGATCACAT 429 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACCAAAAAGA CACACTAAAC CTCAAAGAAG TGATTATTCT TCAACTTATG TTGATCACAT 240 CAATCTCTAC CCTTCTTCTC ATGACACAAT TCCCGAAAAT CTCGAATTCC AACGTCTCGA 489 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAATCTCTAC CCTTCTTCTC ATGACACAAT TCCCGAAAAT CTCGAATTCC AACGTCTCGA 300 AAATGATCCT CAGGTCTACC TCCTTCTCTG CATATGTCTG TTTTGTTTTA ATCAGTAGAG 549 |||||||||| ||| AAATGATCCT CAG....... .......... .......... .......... .......... 313 GCGGATTCAG GATTTGAACT ATTAATATAT TTAAACTCCA TGCCAAGCAT TGAATCATAA 609 .......... .......... .......... .......... .......... .......... 313 TAGTTTTTGT ATTAGTAGGT TCCGAGTAGA TTATTTGTAC ATATTAGATA TACACATATG 669 .......... .......... .......... .......... .......... .......... 313 ATGTTTGAGC TAAAGTTAAT GAATTTTGTC CAACTCTTAA CTATGCCTTG AAAATGATTT 729 .......... .......... .......... .......... .......... .......... 313 TCATGTTAAT TAAGCTCCCC CCCACCCCCC ACCCCCACCC CTCATTTTTC ACTTTTGGGG 789 .......... .......... .......... .......... .......... .......... 313 TTTCTCCTTG TTAGTGAATA ATATATCAGT AGAAAATTTA GATTTACAAT TTCTAGTGAT 849 .......... .......... .......... .......... .......... .......... 313 ACAGGAACTA CTTCCCACCA AAATAGTGAG AAACTTCATA AGTTTTTCAT AGGGATAAGG 909 .......... .......... .......... .......... .......... .......... 313 TGCAATTAGC CTTAGACTAT ACCCGAAATC CCAAAAACAT ATCTTAACTA AACTAAGATC 969 .......... .......... .......... .......... .......... .......... 313 ATATTATGAT GAACTTGTTT TTTTGTATTT TTGTACACCT TTTTGTCTTA CGTGGTATTC 1029 .......... .......... .......... .......... .......... .......... 313 AAATATCTCT CATGTGTCTC AACTGCGTGA AGTCACGGAG TATACCAAGT AAGTTAAAAG 1089 .......... .......... .......... .......... .......... .......... 313 GAGTATAAAA TTACAAAAAT AAAATGAGTA CAGAGGTAAT AGGACTTAAG TTTAGTTAAA 1149 .......... .......... .......... .......... .......... .......... 313 AGTGTAGTAC TTGTACATGC CCTTTTTTCA TATTAAAACA TTACTATTTT ATTCTTTTCT 1209 .......... .......... .......... .......... .......... .......... 313 CGCTGATTTA ATCAAAATAT TTGTGGTCTT AGCCACTTAA CAATGACTTT TACTAGCTTG 1269 .......... .......... .......... .......... .......... .......... 313 GAATTGAAGT GTAGTTGATC CATTTGAATC ACACTTTTGT TGATCCAATG GCTCAGAGAT 1329 .......... .......... .......... .......... .......... .......... 313 AGCACTTCGC TTTAAGTGTT GAGTCATGCA CAATTTTTTT TCTCGATGTA TCAAAGAGTA 1389 .......... .......... .......... .......... .......... .......... 313 CCTATGAACT ATGTTCCGAT TTACTCATAA GGAAGAAAAC GGGGGACGGG GTTGGGGACC 1449 .......... .......... .......... .......... .......... .......... 313 GGACTATATG ATGTGATAGT AAACAGGAAC CATTATGTAA AAGACTTTGG TATCTATGTT 1509 .......... .......... .......... .......... .......... .......... 313 TGGTTGGATT CTTCCAAAAA CATCGCCAGG TGTGTGTCGA ATCCTACAAA ATGTATGTAT 1569 .......... .......... .......... .......... .......... .......... 313 TTTTGAAGGA TTTGACACGG AAACGGAAAC ATTTTGGAGG GTCTAAGTAA CATAGTCGCG 1629 .......... .......... .......... .......... .......... .......... 313 AATTATAAAT CACATTAATG TCAATCAGAT TCATATATCT TTTGGTTTTG GTTTTGCAGA 1689 | .......... .......... .......... .......... .......... .........A 314 AATTGGTTTA CAATGGCAGC CAAGTGACAG AGGAATTTAT TGAAACAGAA TATTACAAAG 1749 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATTGGTTTA CAATGGCAGC CAAGTGACAG AGGAATTTAT TGAAACAGAA TATTACAAAG 374 ATCTTAATTG CATTGACAAG CAGCATCACA CGGTTACTAC TCTCACTCAC TCTTATAACA 1809 |||||||||| |||||||||| |||||||||| || ATCTTAATTG CATTGACAAG CAGCATCACA CG........ .......... .......... 406 CTCTTATTAC CTAAAAAATC CAATTACAGT CGAACCTCTC TATGACGACA TCGTTTGTCT 1869 .......... .......... .......... .......... .......... .......... 406 GTATAATTTT TGGTTGCTAA ACTAAACATG TTGTTATAAA GAGCATAAAA GAGTTAATAG 1929 .......... .......... .......... .......... .......... .......... 406 TAAAAAAATA CACTTACACA CTTTTTCGCG GTTTCATACG CCAACTATCA TTGTTCTCTT 1989 .......... .......... .......... .......... .......... .......... 406 TATCTAAACT ATCACTTTTT TTTGTATTAA AGCACACATC AATTCTGAGT TGGCCAAATA 2049 .......... .......... .......... .......... .......... .......... 406 TTTGTCCACA ATCAACGATA GGCATGTGTA GGCCAACTCA GCATCGAGAT ATGTTTTAAT 2109 .......... .......... .......... .......... .......... .......... 406 ACAAAGGTAA TGATACACGG TTGAGATGTG AAACTCGCGA GAAATTGATA GATTAGGTAG 2169 .......... .......... .......... .......... .......... .......... 406 GTAAATAGAA GAATAGATAT TTGAGGTGTG AAACACGCGA AAAAATGATG TTTTGTGTGT 2229 .......... .......... .......... .......... .......... .......... 406 GCTTTTTTAC CATTAACTCA ACATGTATTA TAATGTAATG TGAAAACTCG GTTCTGAAGA 2289 .......... .......... .......... .......... .......... .......... 406 AAACTTAGTT GTTAGAGTGA AATGTTGTTA TTGAGGATGG ATGTTACAGA GAGGTTTGAT 2349 .......... .......... .......... .......... .......... .......... 406 TGTGTTCTTT TAGTGTCTAT GTTGCTCGGG TTCTCTAAAA ATAATGTAAT TTCGGAGGAT 2409 .......... .......... .......... .......... .......... .......... 406 CTGACATGCT CGTGGCTGTA TTTTTATTGG ATCCAAGAGC AATGTAGCTT TTGGTTTAAA 2469 .......... .......... .......... .......... .......... .......... 406 AAATAAGGTT GATGAACTTT TTTTTTGTGG GAAAATGCAG ACAGGAACAG GATTTATCAA 2529 |||||||||| |||||||||| .......... .......... .......... .......... ACAGGAACAG GATTTATCAA 426 AGTGGAGAAT AATGAGAACA CTTTTAATAT AGGAGCTGAT TATACTACTG ATCCAAGCCA 2589 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTGGAGAAT AATGAGAACA CTTTTAATAT AGGAGCTGAT TATACTACTG ATCCAAGCCA 486 TGTTTACAAG GGGAATCCAG CTACTAATGA TTGGATTCCT TCTGCTGTTG ATGAGGTATG 2649 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||| TGTTTACAAG GGGAATCCAG CTACTAATGA TTGGATTCCT TCTGCTGTTG ATGAG..... 541 ACCAAATGAA ACTTTTTGTA TATGTGACTA AATGTTTGCG ATAACTTGTT GAGAGGCGCG 2709 .......... .......... .......... .......... .......... .......... 541 TGAGATGAAA AAGTCTTAGA AGTGATCTCA CATGACACAA TGAGTTCATG GTGAACACCT 2769 .......... .......... .......... .......... .......... .......... 541 GATAGTTTAG GTTTGAAACT CGAAAGACAA AAATAGTTTT AGGGAGGGGG TTGGGGGTTA 2829 .......... .......... .......... .......... .......... .......... 541 TTTTATTCAC TCAAATTGAT TTCCACATGT ATTGCCACTT GGAATTCTTG TGTAATATGT 2889 .......... .......... .......... .......... .......... .......... 541 CAACCCAAAC TGTTTTATTT TATTTCTTTG GTTATTGTAA TTCTCAAAAT TAATGTCTAA 2949 .......... .......... .......... .......... .......... .......... 541 TTGTCTGTCA TTTTTGGTGG ATCAGGTTAA TTTTATCTCA GGAAAACCAC ACAGAAGTGA 3009 ||||| |||||||||| |||||||||| |||||||||| .......... .......... .....GTTAA TTTTATCTCA GGAAAACCAC ACAGAAGTGA 576 TAACTGAAAT TGAGTCTTTG ATAAAGACAG TATCTGCTTA TTTTGTATTT CTGTGAAGCT 3069 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAACTGAAAT TGAGTCTTTG ATAAAGACAG TATCTGCTTA TTTTGTATTT CTGTGAAGCT 636 TGGCTTCAAC TTGTGTCTCT TTTGTTT-GG TTGTATTTGA ATAACATGCT ATATGAATTA 3128 |||||||||| |||||||||| ||||||| || |||||||||| |||||||||| |||||||||| TGGCTTCAAC TTGTGTCTCT TTTGTTTGGG TTGTATTTGA ATAACATGCT ATATGAATTA 696 TTTCAAACGA TTTTAATGAA GAA 3151 |||||||||| |||||||||| || TTTCAAACGA TTTTAATGAA AAA 719 hqPGS_C06HBa0054K13.1-14+_SGN-E340816+ (190 502,1689 1781,2510 2644,2975 3151) ******************************************************************************** EST sequence 2 +strand 520 n (File: SGN-E294546+) 1 TCAACTAACA TCAAACAAAT AATATTACCC TCTTTTTTTT TCAAGATTTT TTACAAGAAG 61 AAGAAGAAGA AAATGGAAGT GAATGGAAAT ATTAGACCAA ATAGAAGTGA TGTTCATTTA 121 TCAAAAGAGG AAGAAACAAA GATAGAAGAG GAAACAAGAG AGTATTTTGA TGGCATTGCA 181 CCAAAAAGAC ACACTAAACC TCAAAGAAGT GATTATTCTT CAACTTATGT TGATCACATC 241 AATCTCTACC CTTCTTCTCA TGACACAATT CCCGAAAATC TCGAATTCCA ACGTCTCGAA 301 AATGATCCTC AGAAATTGGT TTACAATGGC AGCCAAGTGA CAGAGGAATT TATTGAAACA 361 GAATATTACA AAGATCTTAA TTGCATTGAC AAGCAGCATC ACACGACAGG AACAGGATTT 421 ATCAAAGTGG AGAATAATGA GAACACTTTT AATATAGGAG CTGATTATAC TACTGATCCA 481 AGCCATGTTT ACAAGGGGAA TCCAGCTACT AATGATTGGA Predicted gene structure (within gDNA segment 1 to 3234): Exon 1 191 502 ( 312 n); cDNA 1 312 ( 312 n); score: 1.000 Intron 1 503 1688 (1186 n); Pd: 0.995 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 1689 1781 ( 93 n); cDNA 313 405 ( 93 n); score: 1.000 Intron 2 1782 2509 ( 728 n); Pd: 0.978 (s: 1.00), Pa: 0.994 (s: 1.00) Exon 3 2510 2624 ( 115 n); cDNA 406 520 ( 115 n); score: 1.000 MATCH C06HBa0054K13.1-14+ SGN-E294546+ 1.000 520 1.000 C PGS_C06HBa0054K13.1-14+_SGN-E294546+ (191 502,1689 1781,2510 2624) Alignment (genomic DNA sequence = upper lines): TCAACTAACA TCAAACAAAT AATATTACCC TCTTTTTTTT TCAAGATTTT TTACAAGAAG 250 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCAACTAACA TCAAACAAAT AATATTACCC TCTTTTTTTT TCAAGATTTT TTACAAGAAG 60 AAGAAGAAGA AAATGGAAGT GAATGGAAAT ATTAGACCAA ATAGAAGTGA TGTTCATTTA 310 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGAAGAAGA AAATGGAAGT GAATGGAAAT ATTAGACCAA ATAGAAGTGA TGTTCATTTA 120 TCAAAAGAGG AAGAAACAAA GATAGAAGAG GAAACAAGAG AGTATTTTGA TGGCATTGCA 370 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCAAAAGAGG AAGAAACAAA GATAGAAGAG GAAACAAGAG AGTATTTTGA TGGCATTGCA 180 CCAAAAAGAC ACACTAAACC TCAAAGAAGT GATTATTCTT CAACTTATGT TGATCACATC 430 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCAAAAAGAC ACACTAAACC TCAAAGAAGT GATTATTCTT CAACTTATGT TGATCACATC 240 AATCTCTACC CTTCTTCTCA TGACACAATT CCCGAAAATC TCGAATTCCA ACGTCTCGAA 490 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATCTCTACC CTTCTTCTCA TGACACAATT CCCGAAAATC TCGAATTCCA ACGTCTCGAA 300 AATGATCCTC AGGTCTACCT CCTTCTCTGC ATATGTCTGT TTTGTTTTAA TCAGTAGAGG 550 |||||||||| || AATGATCCTC AG........ .......... .......... .......... .......... 312 CGGATTCAGG ATTTGAACTA TTAATATATT TAAACTCCAT GCCAAGCATT GAATCATAAT 610 .......... .......... .......... .......... .......... .......... 312 AGTTTTTGTA TTAGTAGGTT CCGAGTAGAT TATTTGTACA TATTAGATAT ACACATATGA 670 .......... .......... .......... .......... .......... .......... 312 TGTTTGAGCT AAAGTTAATG AATTTTGTCC AACTCTTAAC TATGCCTTGA AAATGATTTT 730 .......... .......... .......... .......... .......... .......... 312 CATGTTAATT AAGCTCCCCC CCACCCCCCA CCCCCACCCC TCATTTTTCA CTTTTGGGGT 790 .......... .......... .......... .......... .......... .......... 312 TTCTCCTTGT TAGTGAATAA TATATCAGTA GAAAATTTAG ATTTACAATT TCTAGTGATA 850 .......... .......... .......... .......... .......... .......... 312 CAGGAACTAC TTCCCACCAA AATAGTGAGA AACTTCATAA GTTTTTCATA GGGATAAGGT 910 .......... .......... .......... .......... .......... .......... 312 GCAATTAGCC TTAGACTATA CCCGAAATCC CAAAAACATA TCTTAACTAA ACTAAGATCA 970 .......... .......... .......... .......... .......... .......... 312 TATTATGATG AACTTGTTTT TTTGTATTTT TGTACACCTT TTTGTCTTAC GTGGTATTCA 1030 .......... .......... .......... .......... .......... .......... 312 AATATCTCTC ATGTGTCTCA ACTGCGTGAA GTCACGGAGT ATACCAAGTA AGTTAAAAGG 1090 .......... .......... .......... .......... .......... .......... 312 AGTATAAAAT TACAAAAATA AAATGAGTAC AGAGGTAATA GGACTTAAGT TTAGTTAAAA 1150 .......... .......... .......... .......... .......... .......... 312 GTGTAGTACT TGTACATGCC CTTTTTTCAT ATTAAAACAT TACTATTTTA TTCTTTTCTC 1210 .......... .......... .......... .......... .......... .......... 312 GCTGATTTAA TCAAAATATT TGTGGTCTTA GCCACTTAAC AATGACTTTT ACTAGCTTGG 1270 .......... .......... .......... .......... .......... .......... 312 AATTGAAGTG TAGTTGATCC ATTTGAATCA CACTTTTGTT GATCCAATGG CTCAGAGATA 1330 .......... .......... .......... .......... .......... .......... 312 GCACTTCGCT TTAAGTGTTG AGTCATGCAC AATTTTTTTT CTCGATGTAT CAAAGAGTAC 1390 .......... .......... .......... .......... .......... .......... 312 CTATGAACTA TGTTCCGATT TACTCATAAG GAAGAAAACG GGGGACGGGG TTGGGGACCG 1450 .......... .......... .......... .......... .......... .......... 312 GACTATATGA TGTGATAGTA AACAGGAACC ATTATGTAAA AGACTTTGGT ATCTATGTTT 1510 .......... .......... .......... .......... .......... .......... 312 GGTTGGATTC TTCCAAAAAC ATCGCCAGGT GTGTGTCGAA TCCTACAAAA TGTATGTATT 1570 .......... .......... .......... .......... .......... .......... 312 TTTGAAGGAT TTGACACGGA AACGGAAACA TTTTGGAGGG TCTAAGTAAC ATAGTCGCGA 1630 .......... .......... .......... .......... .......... .......... 312 ATTATAAATC ACATTAATGT CAATCAGATT CATATATCTT TTGGTTTTGG TTTTGCAGAA 1690 || .......... .......... .......... .......... .......... ........AA 314 ATTGGTTTAC AATGGCAGCC AAGTGACAGA GGAATTTATT GAAACAGAAT ATTACAAAGA 1750 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTGGTTTAC AATGGCAGCC AAGTGACAGA GGAATTTATT GAAACAGAAT ATTACAAAGA 374 TCTTAATTGC ATTGACAAGC AGCATCACAC GGTTACTACT CTCACTCACT CTTATAACAC 1810 |||||||||| |||||||||| |||||||||| | TCTTAATTGC ATTGACAAGC AGCATCACAC G......... .......... .......... 405 TCTTATTACC TAAAAAATCC AATTACAGTC GAACCTCTCT ATGACGACAT CGTTTGTCTG 1870 .......... .......... .......... .......... .......... .......... 405 TATAATTTTT GGTTGCTAAA CTAAACATGT TGTTATAAAG AGCATAAAAG AGTTAATAGT 1930 .......... .......... .......... .......... .......... .......... 405 AAAAAAATAC ACTTACACAC TTTTTCGCGG TTTCATACGC CAACTATCAT TGTTCTCTTT 1990 .......... .......... .......... .......... .......... .......... 405 ATCTAAACTA TCACTTTTTT TTGTATTAAA GCACACATCA ATTCTGAGTT GGCCAAATAT 2050 .......... .......... .......... .......... .......... .......... 405 TTGTCCACAA TCAACGATAG GCATGTGTAG GCCAACTCAG CATCGAGATA TGTTTTAATA 2110 .......... .......... .......... .......... .......... .......... 405 CAAAGGTAAT GATACACGGT TGAGATGTGA AACTCGCGAG AAATTGATAG ATTAGGTAGG 2170 .......... .......... .......... .......... .......... .......... 405 TAAATAGAAG AATAGATATT TGAGGTGTGA AACACGCGAA AAAATGATGT TTTGTGTGTG 2230 .......... .......... .......... .......... .......... .......... 405 CTTTTTTACC ATTAACTCAA CATGTATTAT AATGTAATGT GAAAACTCGG TTCTGAAGAA 2290 .......... .......... .......... .......... .......... .......... 405 AACTTAGTTG TTAGAGTGAA ATGTTGTTAT TGAGGATGGA TGTTACAGAG AGGTTTGATT 2350 .......... .......... .......... .......... .......... .......... 405 GTGTTCTTTT AGTGTCTATG TTGCTCGGGT TCTCTAAAAA TAATGTAATT TCGGAGGATC 2410 .......... .......... .......... .......... .......... .......... 405 TGACATGCTC GTGGCTGTAT TTTTATTGGA TCCAAGAGCA ATGTAGCTTT TGGTTTAAAA 2470 .......... .......... .......... .......... .......... .......... 405 AATAAGGTTG ATGAACTTTT TTTTTGTGGG AAAATGCAGA CAGGAACAGG ATTTATCAAA 2530 | |||||||||| |||||||||| .......... .......... .......... .........A CAGGAACAGG ATTTATCAAA 426 GTGGAGAATA ATGAGAACAC TTTTAATATA GGAGCTGATT ATACTACTGA TCCAAGCCAT 2590 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGGAGAATA ATGAGAACAC TTTTAATATA GGAGCTGATT ATACTACTGA TCCAAGCCAT 486 GTTTACAAGG GGAATCCAGC TACTAATGAT TGGA 2624 |||||||||| |||||||||| |||||||||| |||| GTTTACAAGG GGAATCCAGC TACTAATGAT TGGA 520 hqPGS_C06HBa0054K13.1-14+_SGN-E294546+ (191 502,1689 1781,2510 2624) ******************************************************************************** EST sequence 8 +strand 462 n (File: SGN-E296694+) 1 TCAACTAACA TCAAACAAAT AATATTACCC TCTTTTTTTT TCAAGATTTT TTACAAGAAG 61 AAGAAGAAGA AAATGGAAGT GAATGGAAAT ATTAGACCAA ATAGAAGTGA TGTTCATTTA 121 TCAAAAGAGG AAGAAACAAA GATAGAAGAG GAAACAAGAG AGTATTTTGA TGGCATTGCA 181 CCAAAAAGAC ACACTAAACC TCAAAGAAGT GATTATTCTT CAACTTATGT TGATCACATC 241 AATCTCTACC CTTCTTCTCA TGACACAATT CCCGAAAATC TCGAATTCCA ACGTCTCGAA 301 AATGATCCTC AGAAATTGGT TTACAATGGC AGCCAAGTGA CAGAGGAATT TATTGAAACA 361 GAATATTACA AAGATCTTAA TTGCATTGAC AAGCAGCATC ACACGACAGG AACAGGATTT 421 ATCAAAGTGG AGAATAATGA GAACACTTTT AATATAGGAG CT Predicted gene structure (within gDNA segment 1 to 3176): Exon 1 191 502 ( 312 n); cDNA 1 312 ( 312 n); score: 1.000 Intron 1 503 1688 (1186 n); Pd: 0.995 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 1689 1781 ( 93 n); cDNA 313 405 ( 93 n); score: 1.000 Intron 2 1782 2509 ( 728 n); Pd: 0.978 (s: 1.00), Pa: 0.994 (s: 1.00) Exon 3 2510 2566 ( 57 n); cDNA 406 462 ( 57 n); score: 1.000 MATCH C06HBa0054K13.1-14+ SGN-E296694+ 1.000 462 1.000 C PGS_C06HBa0054K13.1-14+_SGN-E296694+ (191 502,1689 1781,2510 2566) Alignment (genomic DNA sequence = upper lines): TCAACTAACA TCAAACAAAT AATATTACCC TCTTTTTTTT TCAAGATTTT TTACAAGAAG 250 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCAACTAACA TCAAACAAAT AATATTACCC TCTTTTTTTT TCAAGATTTT TTACAAGAAG 60 AAGAAGAAGA AAATGGAAGT GAATGGAAAT ATTAGACCAA ATAGAAGTGA TGTTCATTTA 310 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGAAGAAGA AAATGGAAGT GAATGGAAAT ATTAGACCAA ATAGAAGTGA TGTTCATTTA 120 TCAAAAGAGG AAGAAACAAA GATAGAAGAG GAAACAAGAG AGTATTTTGA TGGCATTGCA 370 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCAAAAGAGG AAGAAACAAA GATAGAAGAG GAAACAAGAG AGTATTTTGA TGGCATTGCA 180 CCAAAAAGAC ACACTAAACC TCAAAGAAGT GATTATTCTT CAACTTATGT TGATCACATC 430 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCAAAAAGAC ACACTAAACC TCAAAGAAGT GATTATTCTT CAACTTATGT TGATCACATC 240 AATCTCTACC CTTCTTCTCA TGACACAATT CCCGAAAATC TCGAATTCCA ACGTCTCGAA 490 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATCTCTACC CTTCTTCTCA TGACACAATT CCCGAAAATC TCGAATTCCA ACGTCTCGAA 300 AATGATCCTC AGGTCTACCT CCTTCTCTGC ATATGTCTGT TTTGTTTTAA TCAGTAGAGG 550 |||||||||| || AATGATCCTC AG........ .......... .......... .......... .......... 312 CGGATTCAGG ATTTGAACTA TTAATATATT TAAACTCCAT GCCAAGCATT GAATCATAAT 610 .......... .......... .......... .......... .......... .......... 312 AGTTTTTGTA TTAGTAGGTT CCGAGTAGAT TATTTGTACA TATTAGATAT ACACATATGA 670 .......... .......... .......... .......... .......... .......... 312 TGTTTGAGCT AAAGTTAATG AATTTTGTCC AACTCTTAAC TATGCCTTGA AAATGATTTT 730 .......... .......... .......... .......... .......... .......... 312 CATGTTAATT AAGCTCCCCC CCACCCCCCA CCCCCACCCC TCATTTTTCA CTTTTGGGGT 790 .......... .......... .......... .......... .......... .......... 312 TTCTCCTTGT TAGTGAATAA TATATCAGTA GAAAATTTAG ATTTACAATT TCTAGTGATA 850 .......... .......... .......... .......... .......... .......... 312 CAGGAACTAC TTCCCACCAA AATAGTGAGA AACTTCATAA GTTTTTCATA GGGATAAGGT 910 .......... .......... .......... .......... .......... .......... 312 GCAATTAGCC TTAGACTATA CCCGAAATCC CAAAAACATA TCTTAACTAA ACTAAGATCA 970 .......... .......... .......... .......... .......... .......... 312 TATTATGATG AACTTGTTTT TTTGTATTTT TGTACACCTT TTTGTCTTAC GTGGTATTCA 1030 .......... .......... .......... .......... .......... .......... 312 AATATCTCTC ATGTGTCTCA ACTGCGTGAA GTCACGGAGT ATACCAAGTA AGTTAAAAGG 1090 .......... .......... .......... .......... .......... .......... 312 AGTATAAAAT TACAAAAATA AAATGAGTAC AGAGGTAATA GGACTTAAGT TTAGTTAAAA 1150 .......... .......... .......... .......... .......... .......... 312 GTGTAGTACT TGTACATGCC CTTTTTTCAT ATTAAAACAT TACTATTTTA TTCTTTTCTC 1210 .......... .......... .......... .......... .......... .......... 312 GCTGATTTAA TCAAAATATT TGTGGTCTTA GCCACTTAAC AATGACTTTT ACTAGCTTGG 1270 .......... .......... .......... .......... .......... .......... 312 AATTGAAGTG TAGTTGATCC ATTTGAATCA CACTTTTGTT GATCCAATGG CTCAGAGATA 1330 .......... .......... .......... .......... .......... .......... 312 GCACTTCGCT TTAAGTGTTG AGTCATGCAC AATTTTTTTT CTCGATGTAT CAAAGAGTAC 1390 .......... .......... .......... .......... .......... .......... 312 CTATGAACTA TGTTCCGATT TACTCATAAG GAAGAAAACG GGGGACGGGG TTGGGGACCG 1450 .......... .......... .......... .......... .......... .......... 312 GACTATATGA TGTGATAGTA AACAGGAACC ATTATGTAAA AGACTTTGGT ATCTATGTTT 1510 .......... .......... .......... .......... .......... .......... 312 GGTTGGATTC TTCCAAAAAC ATCGCCAGGT GTGTGTCGAA TCCTACAAAA TGTATGTATT 1570 .......... .......... .......... .......... .......... .......... 312 TTTGAAGGAT TTGACACGGA AACGGAAACA TTTTGGAGGG TCTAAGTAAC ATAGTCGCGA 1630 .......... .......... .......... .......... .......... .......... 312 ATTATAAATC ACATTAATGT CAATCAGATT CATATATCTT TTGGTTTTGG TTTTGCAGAA 1690 || .......... .......... .......... .......... .......... ........AA 314 ATTGGTTTAC AATGGCAGCC AAGTGACAGA GGAATTTATT GAAACAGAAT ATTACAAAGA 1750 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTGGTTTAC AATGGCAGCC AAGTGACAGA GGAATTTATT GAAACAGAAT ATTACAAAGA 374 TCTTAATTGC ATTGACAAGC AGCATCACAC GGTTACTACT CTCACTCACT CTTATAACAC 1810 |||||||||| |||||||||| |||||||||| | TCTTAATTGC ATTGACAAGC AGCATCACAC G......... .......... .......... 405 TCTTATTACC TAAAAAATCC AATTACAGTC GAACCTCTCT ATGACGACAT CGTTTGTCTG 1870 .......... .......... .......... .......... .......... .......... 405 TATAATTTTT GGTTGCTAAA CTAAACATGT TGTTATAAAG AGCATAAAAG AGTTAATAGT 1930 .......... .......... .......... .......... .......... .......... 405 AAAAAAATAC ACTTACACAC TTTTTCGCGG TTTCATACGC CAACTATCAT TGTTCTCTTT 1990 .......... .......... .......... .......... .......... .......... 405 ATCTAAACTA TCACTTTTTT TTGTATTAAA GCACACATCA ATTCTGAGTT GGCCAAATAT 2050 .......... .......... .......... .......... .......... .......... 405 TTGTCCACAA TCAACGATAG GCATGTGTAG GCCAACTCAG CATCGAGATA TGTTTTAATA 2110 .......... .......... .......... .......... .......... .......... 405 CAAAGGTAAT GATACACGGT TGAGATGTGA AACTCGCGAG AAATTGATAG ATTAGGTAGG 2170 .......... .......... .......... .......... .......... .......... 405 TAAATAGAAG AATAGATATT TGAGGTGTGA AACACGCGAA AAAATGATGT TTTGTGTGTG 2230 .......... .......... .......... .......... .......... .......... 405 CTTTTTTACC ATTAACTCAA CATGTATTAT AATGTAATGT GAAAACTCGG TTCTGAAGAA 2290 .......... .......... .......... .......... .......... .......... 405 AACTTAGTTG TTAGAGTGAA ATGTTGTTAT TGAGGATGGA TGTTACAGAG AGGTTTGATT 2350 .......... .......... .......... .......... .......... .......... 405 GTGTTCTTTT AGTGTCTATG TTGCTCGGGT TCTCTAAAAA TAATGTAATT TCGGAGGATC 2410 .......... .......... .......... .......... .......... .......... 405 TGACATGCTC GTGGCTGTAT TTTTATTGGA TCCAAGAGCA ATGTAGCTTT TGGTTTAAAA 2470 .......... .......... .......... .......... .......... .......... 405 AATAAGGTTG ATGAACTTTT TTTTTGTGGG AAAATGCAGA CAGGAACAGG ATTTATCAAA 2530 | |||||||||| |||||||||| .......... .......... .......... .........A CAGGAACAGG ATTTATCAAA 426 GTGGAGAATA ATGAGAACAC TTTTAATATA GGAGCT 2566 |||||||||| |||||||||| |||||||||| |||||| GTGGAGAATA ATGAGAACAC TTTTAATATA GGAGCT 462 hqPGS_C06HBa0054K13.1-14+_SGN-E296694+ (191 502,1689 1781,2510 2566) ******************************************************************************** EST sequence 7 +strand 700 n (File: SGN-E341789+) 1 AAATAATATT ACCCTCTTTT TTTTTCAAGA TTTTTTACAA GAAGAAGAAG AAGAAAATGG 61 AAGTGAATGG AAATATTAGA CCAAATAGAA GTGATGTTCA TTTATCAAAA GAGGAAGAAA 121 CAAAGATAGA AGAGGAAACA AGAGAGTATT TTGATGGCAT TGCACCAAAA AGACACACTA 181 AACCTCAAAG AAGTGATTAT TCTTCAACTT ATGTTGATCA CATCAATCTC TACCCTTCTT 241 CTCATGACAC AATTCCCGAA AATCTCGAAT TCCAACGTCT CGAAAATGAT CCTCAGAAAT 301 TGGTTTACAA TGGCAGCCAA GTGACAGAGG AATTTATTGA AACAGAATAT TACAAAGATC 361 TTAATTGCAT TGACAAGCAG CATCACACGA CAGGAACAGG ATTTATCAAA GTGGAGAATA 421 ATGAGAACAC TTTTAATATA GGAGCTGATT ATACTACTGA TCCAAGCCAT GTTTACAAGG 481 GGAATCCAGC TACTAATGAT TGGATTCCTT CTGCTGTTGA TGAGGTTAAT TTTATCTCAG 541 GAAAACCACA CAGAAGTGAT AACTGAAATT GAGTCTTTGA TAAAGACAGT ATCTGCTTAT 601 TTTGTATTTC TGGGAAGCTT GGCTTCAAAC TTGTGTCTCT TTTGTTTGGG TGGTATTTTG 661 AATAACATGC TATATNGAAT TATTTCAAAC GATTTTAATG Predicted gene structure (within gDNA segment 1 to 3756): Exon 1 207 502 ( 296 n); cDNA 1 296 ( 296 n); score: 1.000 Intron 1 503 1688 (1186 n); Pd: 0.995 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 1689 1781 ( 93 n); cDNA 297 389 ( 93 n); score: 1.000 Intron 2 1782 2509 ( 728 n); Pd: 0.978 (s: 1.00), Pa: 0.994 (s: 1.00) Exon 3 2510 2644 ( 135 n); cDNA 390 524 ( 135 n); score: 1.000 Intron 3 2645 2974 ( 330 n); Pd: 1.000 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 4 2975 3146 ( 172 n); cDNA 525 700 ( 176 n); score: 0.930 MATCH C06HBa0054K13.1-14+ SGN-E341789+ 0.983 696 0.994 C PGS_C06HBa0054K13.1-14+_SGN-E341789+ (207 502,1689 1781,2510 2644,2975 3146) Alignment (genomic DNA sequence = upper lines): AAATAATATT ACCCTCTTTT TTTTTCAAGA TTTTTTACAA GAAGAAGAAG AAGAAAATGG 266 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAATAATATT ACCCTCTTTT TTTTTCAAGA TTTTTTACAA GAAGAAGAAG AAGAAAATGG 60 AAGTGAATGG AAATATTAGA CCAAATAGAA GTGATGTTCA TTTATCAAAA GAGGAAGAAA 326 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGTGAATGG AAATATTAGA CCAAATAGAA GTGATGTTCA TTTATCAAAA GAGGAAGAAA 120 CAAAGATAGA AGAGGAAACA AGAGAGTATT TTGATGGCAT TGCACCAAAA AGACACACTA 386 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAAGATAGA AGAGGAAACA AGAGAGTATT TTGATGGCAT TGCACCAAAA AGACACACTA 180 AACCTCAAAG AAGTGATTAT TCTTCAACTT ATGTTGATCA CATCAATCTC TACCCTTCTT 446 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACCTCAAAG AAGTGATTAT TCTTCAACTT ATGTTGATCA CATCAATCTC TACCCTTCTT 240 CTCATGACAC AATTCCCGAA AATCTCGAAT TCCAACGTCT CGAAAATGAT CCTCAGGTCT 506 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||| CTCATGACAC AATTCCCGAA AATCTCGAAT TCCAACGTCT CGAAAATGAT CCTCAG.... 296 ACCTCCTTCT CTGCATATGT CTGTTTTGTT TTAATCAGTA GAGGCGGATT CAGGATTTGA 566 .......... .......... .......... .......... .......... .......... 296 ACTATTAATA TATTTAAACT CCATGCCAAG CATTGAATCA TAATAGTTTT TGTATTAGTA 626 .......... .......... .......... .......... .......... .......... 296 GGTTCCGAGT AGATTATTTG TACATATTAG ATATACACAT ATGATGTTTG AGCTAAAGTT 686 .......... .......... .......... .......... .......... .......... 296 AATGAATTTT GTCCAACTCT TAACTATGCC TTGAAAATGA TTTTCATGTT AATTAAGCTC 746 .......... .......... .......... .......... .......... .......... 296 CCCCCCACCC CCCACCCCCA CCCCTCATTT TTCACTTTTG GGGTTTCTCC TTGTTAGTGA 806 .......... .......... .......... .......... .......... .......... 296 ATAATATATC AGTAGAAAAT TTAGATTTAC AATTTCTAGT GATACAGGAA CTACTTCCCA 866 .......... .......... .......... .......... .......... .......... 296 CCAAAATAGT GAGAAACTTC ATAAGTTTTT CATAGGGATA AGGTGCAATT AGCCTTAGAC 926 .......... .......... .......... .......... .......... .......... 296 TATACCCGAA ATCCCAAAAA CATATCTTAA CTAAACTAAG ATCATATTAT GATGAACTTG 986 .......... .......... .......... .......... .......... .......... 296 TTTTTTTGTA TTTTTGTACA CCTTTTTGTC TTACGTGGTA TTCAAATATC TCTCATGTGT 1046 .......... .......... .......... .......... .......... .......... 296 CTCAACTGCG TGAAGTCACG GAGTATACCA AGTAAGTTAA AAGGAGTATA AAATTACAAA 1106 .......... .......... .......... .......... .......... .......... 296 AATAAAATGA GTACAGAGGT AATAGGACTT AAGTTTAGTT AAAAGTGTAG TACTTGTACA 1166 .......... .......... .......... .......... .......... .......... 296 TGCCCTTTTT TCATATTAAA ACATTACTAT TTTATTCTTT TCTCGCTGAT TTAATCAAAA 1226 .......... .......... .......... .......... .......... .......... 296 TATTTGTGGT CTTAGCCACT TAACAATGAC TTTTACTAGC TTGGAATTGA AGTGTAGTTG 1286 .......... .......... .......... .......... .......... .......... 296 ATCCATTTGA ATCACACTTT TGTTGATCCA ATGGCTCAGA GATAGCACTT CGCTTTAAGT 1346 .......... .......... .......... .......... .......... .......... 296 GTTGAGTCAT GCACAATTTT TTTTCTCGAT GTATCAAAGA GTACCTATGA ACTATGTTCC 1406 .......... .......... .......... .......... .......... .......... 296 GATTTACTCA TAAGGAAGAA AACGGGGGAC GGGGTTGGGG ACCGGACTAT ATGATGTGAT 1466 .......... .......... .......... .......... .......... .......... 296 AGTAAACAGG AACCATTATG TAAAAGACTT TGGTATCTAT GTTTGGTTGG ATTCTTCCAA 1526 .......... .......... .......... .......... .......... .......... 296 AAACATCGCC AGGTGTGTGT CGAATCCTAC AAAATGTATG TATTTTTGAA GGATTTGACA 1586 .......... .......... .......... .......... .......... .......... 296 CGGAAACGGA AACATTTTGG AGGGTCTAAG TAACATAGTC GCGAATTATA AATCACATTA 1646 .......... .......... .......... .......... .......... .......... 296 ATGTCAATCA GATTCATATA TCTTTTGGTT TTGGTTTTGC AGAAATTGGT TTACAATGGC 1706 |||||||| |||||||||| .......... .......... .......... .......... ..AAATTGGT TTACAATGGC 314 AGCCAAGTGA CAGAGGAATT TATTGAAACA GAATATTACA AAGATCTTAA TTGCATTGAC 1766 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCCAAGTGA CAGAGGAATT TATTGAAACA GAATATTACA AAGATCTTAA TTGCATTGAC 374 AAGCAGCATC ACACGGTTAC TACTCTCACT CACTCTTATA ACACTCTTAT TACCTAAAAA 1826 |||||||||| ||||| AAGCAGCATC ACACG..... .......... .......... .......... .......... 389 ATCCAATTAC AGTCGAACCT CTCTATGACG ACATCGTTTG TCTGTATAAT TTTTGGTTGC 1886 .......... .......... .......... .......... .......... .......... 389 TAAACTAAAC ATGTTGTTAT AAAGAGCATA AAAGAGTTAA TAGTAAAAAA ATACACTTAC 1946 .......... .......... .......... .......... .......... .......... 389 ACACTTTTTC GCGGTTTCAT ACGCCAACTA TCATTGTTCT CTTTATCTAA ACTATCACTT 2006 .......... .......... .......... .......... .......... .......... 389 TTTTTTGTAT TAAAGCACAC ATCAATTCTG AGTTGGCCAA ATATTTGTCC ACAATCAACG 2066 .......... .......... .......... .......... .......... .......... 389 ATAGGCATGT GTAGGCCAAC TCAGCATCGA GATATGTTTT AATACAAAGG TAATGATACA 2126 .......... .......... .......... .......... .......... .......... 389 CGGTTGAGAT GTGAAACTCG CGAGAAATTG ATAGATTAGG TAGGTAAATA GAAGAATAGA 2186 .......... .......... .......... .......... .......... .......... 389 TATTTGAGGT GTGAAACACG CGAAAAAATG ATGTTTTGTG TGTGCTTTTT TACCATTAAC 2246 .......... .......... .......... .......... .......... .......... 389 TCAACATGTA TTATAATGTA ATGTGAAAAC TCGGTTCTGA AGAAAACTTA GTTGTTAGAG 2306 .......... .......... .......... .......... .......... .......... 389 TGAAATGTTG TTATTGAGGA TGGATGTTAC AGAGAGGTTT GATTGTGTTC TTTTAGTGTC 2366 .......... .......... .......... .......... .......... .......... 389 TATGTTGCTC GGGTTCTCTA AAAATAATGT AATTTCGGAG GATCTGACAT GCTCGTGGCT 2426 .......... .......... .......... .......... .......... .......... 389 GTATTTTTAT TGGATCCAAG AGCAATGTAG CTTTTGGTTT AAAAAATAAG GTTGATGAAC 2486 .......... .......... .......... .......... .......... .......... 389 TTTTTTTTTG TGGGAAAATG CAGACAGGAA CAGGATTTAT CAAAGTGGAG AATAATGAGA 2546 ||||||| |||||||||| |||||||||| |||||||||| .......... .......... ...ACAGGAA CAGGATTTAT CAAAGTGGAG AATAATGAGA 426 ACACTTTTAA TATAGGAGCT GATTATACTA CTGATCCAAG CCATGTTTAC AAGGGGAATC 2606 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACACTTTTAA TATAGGAGCT GATTATACTA CTGATCCAAG CCATGTTTAC AAGGGGAATC 486 CAGCTACTAA TGATTGGATT CCTTCTGCTG TTGATGAGGT ATGACCAAAT GAAACTTTTT 2666 |||||||||| |||||||||| |||||||||| |||||||| CAGCTACTAA TGATTGGATT CCTTCTGCTG TTGATGAG.. .......... .......... 524 GTATATGTGA CTAAATGTTT GCGATAACTT GTTGAGAGGC GCGTGAGATG AAAAAGTCTT 2726 .......... .......... .......... .......... .......... .......... 524 AGAAGTGATC TCACATGACA CAATGAGTTC ATGGTGAACA CCTGATAGTT TAGGTTTGAA 2786 .......... .......... .......... .......... .......... .......... 524 ACTCGAAAGA CAAAAATAGT TTTAGGGAGG GGGTTGGGGG TTATTTTATT CACTCAAATT 2846 .......... .......... .......... .......... .......... .......... 524 GATTTCCACA TGTATTGCCA CTTGGAATTC TTGTGTAATA TGTCAACCCA AACTGTTTTA 2906 .......... .......... .......... .......... .......... .......... 524 TTTTATTTCT TTGGTTATTG TAATTCTCAA AATTAATGTC TAATTGTCTG TCATTTTTGG 2966 .......... .......... .......... .......... .......... .......... 524 TGGATCAGGT TAATTTTATC TCAGGAAAAC CACACAGAAG TGATAACTGA AATTGAGTCT 3026 || |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ........GT TAATTTTATC TCAGGAAAAC CACACAGAAG TGATAACTGA AATTGAGTCT 576 TTGATAAAGA CAGTATCTGC TTATTTTGTA TTTCTGTGAA GCTTGGCTTC -AACTTGTGT 3085 |||||||||| |||||||||| |||||||||| |||||| ||| |||||||||| ||||||||| TTGATAAAGA CAGTATCTGC TTATTTTGTA TTTCTGGGAA GCTTGGCTTC AAACTTGTGT 636 CTCTTTTGTT T-GGTTGTA- TTTGAATAAC ATGCTATAT- GAATTATTTC AAACGATTTT 3142 |||||||||| | ||| ||| |||||||||| ||||||||| |||||||||| |||||||||| CTCTTTTGTT TGGGTGGTAT TTTGAATAAC ATGCTATATN GAATTATTTC AAACGATTTT 696 AATG 3146 |||| AATG 700 hqPGS_C06HBa0054K13.1-14+_SGN-E341789+ (207 502,1689 1781,2510 2644,2975 3146) ******************************************************************************** EST sequence 5 +strand 457 n (File: SGN-E341086+) 1 TTTTTTTTTC AAGATTTTTT ACAAGAAGAA GAAGAAGAAA ATGGAAGTGA ATGGAAATAT 61 TAGACCAAAT AGAAGTGATG TTCATTTATC AAAAGAGGAA GAAACAAAGA TAGAAGAGGA 121 AACAAGAGAG TATTTTGATG GCATTGCACC AAAAAGACAC ACTAAACCTC AAAGAAGTGA 181 TTATTCTTCA ACTTATGTTG ATCACATCAA TCTCTACCCT TCTTCTCATG ACACAATTCC 241 CGAAAATCTC GAATTCCAAC GTCTCGAAAA TGATCCTCAG AAATTGGTTT ACAATGGCAG 301 CCAAGTGACA GAGGAATTTA TTGAAACAGA ATATTACAAA GATCTTAATT GCATTGACAA 361 GCAGCATCAC ACGGTTACTA CTCTCACTCA CTCTTATAAC ACTCTTATTA CCTAAAAAAT 421 CCAATTACAG TCGAACCTCT CTATGACGAC ATCGGTT Predicted gene structure (within gDNA segment 1 to 2502): Exon 1 223 502 ( 280 n); cDNA 1 280 ( 280 n); score: 1.000 Intron 1 503 1688 (1186 n); Pd: 0.995 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 1689 1865 ( 177 n); cDNA 281 457 ( 177 n); score: 0.994 MATCH C06HBa0054K13.1-14+ SGN-E341086+ 0.998 457 1.000 C PGS_C06HBa0054K13.1-14+_SGN-E341086+ (223 502,1689 1865) Alignment (genomic DNA sequence = upper lines): TTTTTTTTTC AAGATTTTTT ACAAGAAGAA GAAGAAGAAA ATGGAAGTGA ATGGAAATAT 282 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTTTTTTTC AAGATTTTTT ACAAGAAGAA GAAGAAGAAA ATGGAAGTGA ATGGAAATAT 60 TAGACCAAAT AGAAGTGATG TTCATTTATC AAAAGAGGAA GAAACAAAGA TAGAAGAGGA 342 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAGACCAAAT AGAAGTGATG TTCATTTATC AAAAGAGGAA GAAACAAAGA TAGAAGAGGA 120 AACAAGAGAG TATTTTGATG GCATTGCACC AAAAAGACAC ACTAAACCTC AAAGAAGTGA 402 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACAAGAGAG TATTTTGATG GCATTGCACC AAAAAGACAC ACTAAACCTC AAAGAAGTGA 180 TTATTCTTCA ACTTATGTTG ATCACATCAA TCTCTACCCT TCTTCTCATG ACACAATTCC 462 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTATTCTTCA ACTTATGTTG ATCACATCAA TCTCTACCCT TCTTCTCATG ACACAATTCC 240 CGAAAATCTC GAATTCCAAC GTCTCGAAAA TGATCCTCAG GTCTACCTCC TTCTCTGCAT 522 |||||||||| |||||||||| |||||||||| |||||||||| CGAAAATCTC GAATTCCAAC GTCTCGAAAA TGATCCTCAG .......... .......... 280 ATGTCTGTTT TGTTTTAATC AGTAGAGGCG GATTCAGGAT TTGAACTATT AATATATTTA 582 .......... .......... .......... .......... .......... .......... 280 AACTCCATGC CAAGCATTGA ATCATAATAG TTTTTGTATT AGTAGGTTCC GAGTAGATTA 642 .......... .......... .......... .......... .......... .......... 280 TTTGTACATA TTAGATATAC ACATATGATG TTTGAGCTAA AGTTAATGAA TTTTGTCCAA 702 .......... .......... .......... .......... .......... .......... 280 CTCTTAACTA TGCCTTGAAA ATGATTTTCA TGTTAATTAA GCTCCCCCCC ACCCCCCACC 762 .......... .......... .......... .......... .......... .......... 280 CCCACCCCTC ATTTTTCACT TTTGGGGTTT CTCCTTGTTA GTGAATAATA TATCAGTAGA 822 .......... .......... .......... .......... .......... .......... 280 AAATTTAGAT TTACAATTTC TAGTGATACA GGAACTACTT CCCACCAAAA TAGTGAGAAA 882 .......... .......... .......... .......... .......... .......... 280 CTTCATAAGT TTTTCATAGG GATAAGGTGC AATTAGCCTT AGACTATACC CGAAATCCCA 942 .......... .......... .......... .......... .......... .......... 280 AAAACATATC TTAACTAAAC TAAGATCATA TTATGATGAA CTTGTTTTTT TGTATTTTTG 1002 .......... .......... .......... .......... .......... .......... 280 TACACCTTTT TGTCTTACGT GGTATTCAAA TATCTCTCAT GTGTCTCAAC TGCGTGAAGT 1062 .......... .......... .......... .......... .......... .......... 280 CACGGAGTAT ACCAAGTAAG TTAAAAGGAG TATAAAATTA CAAAAATAAA ATGAGTACAG 1122 .......... .......... .......... .......... .......... .......... 280 AGGTAATAGG ACTTAAGTTT AGTTAAAAGT GTAGTACTTG TACATGCCCT TTTTTCATAT 1182 .......... .......... .......... .......... .......... .......... 280 TAAAACATTA CTATTTTATT CTTTTCTCGC TGATTTAATC AAAATATTTG TGGTCTTAGC 1242 .......... .......... .......... .......... .......... .......... 280 CACTTAACAA TGACTTTTAC TAGCTTGGAA TTGAAGTGTA GTTGATCCAT TTGAATCACA 1302 .......... .......... .......... .......... .......... .......... 280 CTTTTGTTGA TCCAATGGCT CAGAGATAGC ACTTCGCTTT AAGTGTTGAG TCATGCACAA 1362 .......... .......... .......... .......... .......... .......... 280 TTTTTTTTCT CGATGTATCA AAGAGTACCT ATGAACTATG TTCCGATTTA CTCATAAGGA 1422 .......... .......... .......... .......... .......... .......... 280 AGAAAACGGG GGACGGGGTT GGGGACCGGA CTATATGATG TGATAGTAAA CAGGAACCAT 1482 .......... .......... .......... .......... .......... .......... 280 TATGTAAAAG ACTTTGGTAT CTATGTTTGG TTGGATTCTT CCAAAAACAT CGCCAGGTGT 1542 .......... .......... .......... .......... .......... .......... 280 GTGTCGAATC CTACAAAATG TATGTATTTT TGAAGGATTT GACACGGAAA CGGAAACATT 1602 .......... .......... .......... .......... .......... .......... 280 TTGGAGGGTC TAAGTAACAT AGTCGCGAAT TATAAATCAC ATTAATGTCA ATCAGATTCA 1662 .......... .......... .......... .......... .......... .......... 280 TATATCTTTT GGTTTTGGTT TTGCAGAAAT TGGTTTACAA TGGCAGCCAA GTGACAGAGG 1722 |||| |||||||||| |||||||||| |||||||||| .......... .......... ......AAAT TGGTTTACAA TGGCAGCCAA GTGACAGAGG 314 AATTTATTGA AACAGAATAT TACAAAGATC TTAATTGCAT TGACAAGCAG CATCACACGG 1782 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATTTATTGA AACAGAATAT TACAAAGATC TTAATTGCAT TGACAAGCAG CATCACACGG 374 TTACTACTCT CACTCACTCT TATAACACTC TTATTACCTA AAAAATCCAA TTACAGTCGA 1842 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTACTACTCT CACTCACTCT TATAACACTC TTATTACCTA AAAAATCCAA TTACAGTCGA 434 ACCTCTCTAT GACGACATCG TTT 1865 |||||||||| |||||||||| || ACCTCTCTAT GACGACATCG GTT 457 hqPGS_C06HBa0054K13.1-14+_SGN-E341086+ (223 502,1689 1865) ******************************************************************************** EST sequence 12 -strand 672 n (File: SGN-E339334-) 1 AGAAGAAGAA GAAAATGGAA GTGAATGGAA ATATTAGACC CAAATAGAAG TGATGTTCAT 61 TTATCAAAAG AGGAAGAAAC AAAGATAGAA GAGGAAACAA GAGAGTATTT TGATGGCATT 121 GCACCAAAAA GACACACTAA ACCTCAAAGA AGTGATTATT CTTCAACTTA TGTTGATCAC 181 ATCAATCTCT ACCCTTCTTC TCATGACACA ATTCCCGAAA ATCTCGAATT CCAACGTCTC 241 GAAAATGATC CTCAGAAATT GGTTTACAAT GGCAGCCAAG TGACAGAGGA ATTTATTGAA 301 ACAGAATATT ACAAAGATCT TAATTGCATT GACAAGCAGC ATCACACGAC AGGAACAGGA 361 TTTATCAAAG TGGAGAATAA TGAGAACACT TTTAATATAG GAGCTGATTA TACTACTGAT 421 CCAAGCCATG TTTACAAGGG GAATCCAGCT ACTAATGATT GGATTCCTTC TGCTGTTGAT 481 GAGGTTAATT TTATCTCAGG AAAACCACAC AGAAGTGATA ACTGAAATTG AGTCTTTGAT 541 AAAGACAGTA TCTGCTTATT TTGTATTTCT GTGAAGCTTG GCTTCAACTT GTGTCTCTTT 601 TGTTTGGTTG TATTTGAATA ACATGCTATA TGAATTATTT CAAACGATTT TAAAAAAAAA 661 AAAAAAAAAC TC Predicted gene structure (within gDNA segment 1 to 3934): Exon 1 249 502 ( 254 n); cDNA 1 255 ( 255 n); score: 0.990 Intron 1 503 1688 (1186 n); Pd: 0.995 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 1689 1781 ( 93 n); cDNA 256 348 ( 93 n); score: 1.000 Intron 2 1782 2509 ( 728 n); Pd: 0.978 (s: 1.00), Pa: 0.994 (s: 1.00) Exon 3 2510 2644 ( 135 n); cDNA 349 483 ( 135 n); score: 1.000 Intron 3 2645 2974 ( 330 n); Pd: 1.000 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 4 2975 3151 ( 177 n); cDNA 484 660 ( 177 n); score: 0.983 MATCH C06HBa0054K13.1-14+ SGN-E339334- 0.992 659 0.981 C PGS_C06HBa0054K13.1-14+_SGN-E339334- (249 502,1689 1781,2510 2644,2975 3151) Alignment (genomic DNA sequence = upper lines): AGAAGAAGAA GAAAATGGAA GTGAATGGAA ATATTAGA-C CAAATAGAAG TGATGTTCAT 307 |||||||||| |||||||||| |||||||||| |||||||| | |||||||||| |||||||||| AGAAGAAGAA GAAAATGGAA GTGAATGGAA ATATTAGACC CAAATAGAAG TGATGTTCAT 60 TTATCAAAAG AGGAAGAAAC AAAGATAGAA GAGGAAACAA GAGAGTATTT TGATGGCATT 367 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTATCAAAAG AGGAAGAAAC AAAGATAGAA GAGGAAACAA GAGAGTATTT TGATGGCATT 120 GCACCAAAAA GACACACTAA ACCTCAAAGA AGTGATTATT CTTCAACTTA TGTTGATCAC 427 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCACCAAAAA GACACACTAA ACCTCAAAGA AGTGATTATT CTTCAACTTA TGTTGATCAC 180 ATCAATCTCT ACCCTTCTTC TCATGACACA ATTCCCGAAA ATCTCGAATT CCAACGTCTC 487 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCAATCTCT ACCCTTCTTC TCATGACACA ATTCCCGAAA ATCTCGAATT CCAACGTCTC 240 GAAAATGATC CTCAGGTCTA CCTCCTTCTC TGCATATGTC TGTTTTGTTT TAATCAGTAG 547 |||||||||| ||||| GAAAATGATC CTCAG..... .......... .......... .......... .......... 255 AGGCGGATTC AGGATTTGAA CTATTAATAT ATTTAAACTC CATGCCAAGC ATTGAATCAT 607 .......... .......... .......... .......... .......... .......... 255 AATAGTTTTT GTATTAGTAG GTTCCGAGTA GATTATTTGT ACATATTAGA TATACACATA 667 .......... .......... .......... .......... .......... .......... 255 TGATGTTTGA GCTAAAGTTA ATGAATTTTG TCCAACTCTT AACTATGCCT TGAAAATGAT 727 .......... .......... .......... .......... .......... .......... 255 TTTCATGTTA ATTAAGCTCC CCCCCACCCC CCACCCCCAC CCCTCATTTT TCACTTTTGG 787 .......... .......... .......... .......... .......... .......... 255 GGTTTCTCCT TGTTAGTGAA TAATATATCA GTAGAAAATT TAGATTTACA ATTTCTAGTG 847 .......... .......... .......... .......... .......... .......... 255 ATACAGGAAC TACTTCCCAC CAAAATAGTG AGAAACTTCA TAAGTTTTTC ATAGGGATAA 907 .......... .......... .......... .......... .......... .......... 255 GGTGCAATTA GCCTTAGACT ATACCCGAAA TCCCAAAAAC ATATCTTAAC TAAACTAAGA 967 .......... .......... .......... .......... .......... .......... 255 TCATATTATG ATGAACTTGT TTTTTTGTAT TTTTGTACAC CTTTTTGTCT TACGTGGTAT 1027 .......... .......... .......... .......... .......... .......... 255 TCAAATATCT CTCATGTGTC TCAACTGCGT GAAGTCACGG AGTATACCAA GTAAGTTAAA 1087 .......... .......... .......... .......... .......... .......... 255 AGGAGTATAA AATTACAAAA ATAAAATGAG TACAGAGGTA ATAGGACTTA AGTTTAGTTA 1147 .......... .......... .......... .......... .......... .......... 255 AAAGTGTAGT ACTTGTACAT GCCCTTTTTT CATATTAAAA CATTACTATT TTATTCTTTT 1207 .......... .......... .......... .......... .......... .......... 255 CTCGCTGATT TAATCAAAAT ATTTGTGGTC TTAGCCACTT AACAATGACT TTTACTAGCT 1267 .......... .......... .......... .......... .......... .......... 255 TGGAATTGAA GTGTAGTTGA TCCATTTGAA TCACACTTTT GTTGATCCAA TGGCTCAGAG 1327 .......... .......... .......... .......... .......... .......... 255 ATAGCACTTC GCTTTAAGTG TTGAGTCATG CACAATTTTT TTTCTCGATG TATCAAAGAG 1387 .......... .......... .......... .......... .......... .......... 255 TACCTATGAA CTATGTTCCG ATTTACTCAT AAGGAAGAAA ACGGGGGACG GGGTTGGGGA 1447 .......... .......... .......... .......... .......... .......... 255 CCGGACTATA TGATGTGATA GTAAACAGGA ACCATTATGT AAAAGACTTT GGTATCTATG 1507 .......... .......... .......... .......... .......... .......... 255 TTTGGTTGGA TTCTTCCAAA AACATCGCCA GGTGTGTGTC GAATCCTACA AAATGTATGT 1567 .......... .......... .......... .......... .......... .......... 255 ATTTTTGAAG GATTTGACAC GGAAACGGAA ACATTTTGGA GGGTCTAAGT AACATAGTCG 1627 .......... .......... .......... .......... .......... .......... 255 CGAATTATAA ATCACATTAA TGTCAATCAG ATTCATATAT CTTTTGGTTT TGGTTTTGCA 1687 .......... .......... .......... .......... .......... .......... 255 GAAATTGGTT TACAATGGCA GCCAAGTGAC AGAGGAATTT ATTGAAACAG AATATTACAA 1747 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .AAATTGGTT TACAATGGCA GCCAAGTGAC AGAGGAATTT ATTGAAACAG AATATTACAA 314 AGATCTTAAT TGCATTGACA AGCAGCATCA CACGGTTACT ACTCTCACTC ACTCTTATAA 1807 |||||||||| |||||||||| |||||||||| |||| AGATCTTAAT TGCATTGACA AGCAGCATCA CACG...... .......... .......... 348 CACTCTTATT ACCTAAAAAA TCCAATTACA GTCGAACCTC TCTATGACGA CATCGTTTGT 1867 .......... .......... .......... .......... .......... .......... 348 CTGTATAATT TTTGGTTGCT AAACTAAACA TGTTGTTATA AAGAGCATAA AAGAGTTAAT 1927 .......... .......... .......... .......... .......... .......... 348 AGTAAAAAAA TACACTTACA CACTTTTTCG CGGTTTCATA CGCCAACTAT CATTGTTCTC 1987 .......... .......... .......... .......... .......... .......... 348 TTTATCTAAA CTATCACTTT TTTTTGTATT AAAGCACACA TCAATTCTGA GTTGGCCAAA 2047 .......... .......... .......... .......... .......... .......... 348 TATTTGTCCA CAATCAACGA TAGGCATGTG TAGGCCAACT CAGCATCGAG ATATGTTTTA 2107 .......... .......... .......... .......... .......... .......... 348 ATACAAAGGT AATGATACAC GGTTGAGATG TGAAACTCGC GAGAAATTGA TAGATTAGGT 2167 .......... .......... .......... .......... .......... .......... 348 AGGTAAATAG AAGAATAGAT ATTTGAGGTG TGAAACACGC GAAAAAATGA TGTTTTGTGT 2227 .......... .......... .......... .......... .......... .......... 348 GTGCTTTTTT ACCATTAACT CAACATGTAT TATAATGTAA TGTGAAAACT CGGTTCTGAA 2287 .......... .......... .......... .......... .......... .......... 348 GAAAACTTAG TTGTTAGAGT GAAATGTTGT TATTGAGGAT GGATGTTACA GAGAGGTTTG 2347 .......... .......... .......... .......... .......... .......... 348 ATTGTGTTCT TTTAGTGTCT ATGTTGCTCG GGTTCTCTAA AAATAATGTA ATTTCGGAGG 2407 .......... .......... .......... .......... .......... .......... 348 ATCTGACATG CTCGTGGCTG TATTTTTATT GGATCCAAGA GCAATGTAGC TTTTGGTTTA 2467 .......... .......... .......... .......... .......... .......... 348 AAAAATAAGG TTGATGAACT TTTTTTTTGT GGGAAAATGC AGACAGGAAC AGGATTTATC 2527 |||||||| |||||||||| .......... .......... .......... .......... ..ACAGGAAC AGGATTTATC 366 AAAGTGGAGA ATAATGAGAA CACTTTTAAT ATAGGAGCTG ATTATACTAC TGATCCAAGC 2587 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAGTGGAGA ATAATGAGAA CACTTTTAAT ATAGGAGCTG ATTATACTAC TGATCCAAGC 426 CATGTTTACA AGGGGAATCC AGCTACTAAT GATTGGATTC CTTCTGCTGT TGATGAGGTA 2647 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||| CATGTTTACA AGGGGAATCC AGCTACTAAT GATTGGATTC CTTCTGCTGT TGATGAG... 483 TGACCAAATG AAACTTTTTG TATATGTGAC TAAATGTTTG CGATAACTTG TTGAGAGGCG 2707 .......... .......... .......... .......... .......... .......... 483 CGTGAGATGA AAAAGTCTTA GAAGTGATCT CACATGACAC AATGAGTTCA TGGTGAACAC 2767 .......... .......... .......... .......... .......... .......... 483 CTGATAGTTT AGGTTTGAAA CTCGAAAGAC AAAAATAGTT TTAGGGAGGG GGTTGGGGGT 2827 .......... .......... .......... .......... .......... .......... 483 TATTTTATTC ACTCAAATTG ATTTCCACAT GTATTGCCAC TTGGAATTCT TGTGTAATAT 2887 .......... .......... .......... .......... .......... .......... 483 GTCAACCCAA ACTGTTTTAT TTTATTTCTT TGGTTATTGT AATTCTCAAA ATTAATGTCT 2947 .......... .......... .......... .......... .......... .......... 483 AATTGTCTGT CATTTTTGGT GGATCAGGTT AATTTTATCT CAGGAAAACC ACACAGAAGT 3007 ||| |||||||||| |||||||||| |||||||||| .......... .......... .......GTT AATTTTATCT CAGGAAAACC ACACAGAAGT 516 GATAACTGAA ATTGAGTCTT TGATAAAGAC AGTATCTGCT TATTTTGTAT TTCTGTGAAG 3067 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATAACTGAA ATTGAGTCTT TGATAAAGAC AGTATCTGCT TATTTTGTAT TTCTGTGAAG 576 CTTGGCTTCA ACTTGTGTCT CTTTTGTTTG GTTGTATTTG AATAACATGC TATATGAATT 3127 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTGGCTTCA ACTTGTGTCT CTTTTGTTTG GTTGTATTTG AATAACATGC TATATGAATT 636 ATTTCAAACG ATTTTAATGA AGAA 3151 |||||||||| ||||||| | | || ATTTCAAACG ATTTTAAAAA AAAA 660 hqPGS_C06HBa0054K13.1-14+_SGN-E339334- (249 502,1689 1781,2510 2644,2975 3151) ******************************************************************************** EST sequence 10 +strand 658 n (File: SGN-E298932+) 1 AAGAAGAAAA TGGAAGTGAA TGGAAATATT AGACCAAATA GAAGTGATGT TCATTTATCA 61 AAAGAGGAAG AAACAAAGAT AGAAGAGGAA ACAAGAGAGT ATTTTGATGG CATTGCACCA 121 AAAAGACACA CTAAACCTCA AAGAAGTGAT TATTCTTCAA CTTATGTTGA TCACATCAAT 181 CTCTACCCTT CTTCTCATGA CACAATTCCC GAAAATCTCG AATTCCAACG TCTCGAAAAT 241 GATCCTCAGA AATTGGTTTA CAATGGCAGC CAAGTGACAG AGGAATTTAT TGAAACAGAA 301 TATTACAAAG ATCTTAATTG CATTGACAAG CAGCATCACA CGACAGGAAC AGGATTTATC 361 AAAGTGGAGA ATAATGAGAA CACTTTTAAT ATAGGAGCTG ATTATACTAC TGATCCAAGC 421 CATGTTTACA AGGGGAATCC AGCTACTAAT GATTGGATTC CTTCTGCTGT TGATGAGGTT 481 AATTTTATCT CAGGAAAACC ACACAGAAGT GATAACTGAA ATTGAGTCTT TGATAAAGAC 541 AGTATCTGCT TATTTTGTAT TTCTGTGAAG CTTGGCTTCA ACTTGTGTCT CTTTTGATTG 601 GTTGTATTTG AATAACATGC TATATGAATT ATTTCAAACG ATTTTAATGA AGAATTTA Predicted gene structure (within gDNA segment 1 to 3765): Exon 1 254 502 ( 249 n); cDNA 1 249 ( 249 n); score: 1.000 Intron 1 503 1688 (1186 n); Pd: 0.995 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 1689 1781 ( 93 n); cDNA 250 342 ( 93 n); score: 1.000 Intron 2 1782 2509 ( 728 n); Pd: 0.978 (s: 1.00), Pa: 0.994 (s: 1.00) Exon 3 2510 2644 ( 135 n); cDNA 343 477 ( 135 n); score: 1.000 Intron 3 2645 2974 ( 330 n); Pd: 1.000 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 4 2975 3155 ( 181 n); cDNA 478 658 ( 181 n); score: 0.994 MATCH C06HBa0054K13.1-14+ SGN-E298932+ 0.998 658 1.000 C PGS_C06HBa0054K13.1-14+_SGN-E298932+ (254 502,1689 1781,2510 2644,2975 3155) Alignment (genomic DNA sequence = upper lines): AAGAAGAAAA TGGAAGTGAA TGGAAATATT AGACCAAATA GAAGTGATGT TCATTTATCA 313 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGAAGAAAA TGGAAGTGAA TGGAAATATT AGACCAAATA GAAGTGATGT TCATTTATCA 60 AAAGAGGAAG AAACAAAGAT AGAAGAGGAA ACAAGAGAGT ATTTTGATGG CATTGCACCA 373 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAGAGGAAG AAACAAAGAT AGAAGAGGAA ACAAGAGAGT ATTTTGATGG CATTGCACCA 120 AAAAGACACA CTAAACCTCA AAGAAGTGAT TATTCTTCAA CTTATGTTGA TCACATCAAT 433 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAAGACACA CTAAACCTCA AAGAAGTGAT TATTCTTCAA CTTATGTTGA TCACATCAAT 180 CTCTACCCTT CTTCTCATGA CACAATTCCC GAAAATCTCG AATTCCAACG TCTCGAAAAT 493 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCTACCCTT CTTCTCATGA CACAATTCCC GAAAATCTCG AATTCCAACG TCTCGAAAAT 240 GATCCTCAGG TCTACCTCCT TCTCTGCATA TGTCTGTTTT GTTTTAATCA GTAGAGGCGG 553 ||||||||| GATCCTCAG. .......... .......... .......... .......... .......... 249 ATTCAGGATT TGAACTATTA ATATATTTAA ACTCCATGCC AAGCATTGAA TCATAATAGT 613 .......... .......... .......... .......... .......... .......... 249 TTTTGTATTA GTAGGTTCCG AGTAGATTAT TTGTACATAT TAGATATACA CATATGATGT 673 .......... .......... .......... .......... .......... .......... 249 TTGAGCTAAA GTTAATGAAT TTTGTCCAAC TCTTAACTAT GCCTTGAAAA TGATTTTCAT 733 .......... .......... .......... .......... .......... .......... 249 GTTAATTAAG CTCCCCCCCA CCCCCCACCC CCACCCCTCA TTTTTCACTT TTGGGGTTTC 793 .......... .......... .......... .......... .......... .......... 249 TCCTTGTTAG TGAATAATAT ATCAGTAGAA AATTTAGATT TACAATTTCT AGTGATACAG 853 .......... .......... .......... .......... .......... .......... 249 GAACTACTTC CCACCAAAAT AGTGAGAAAC TTCATAAGTT TTTCATAGGG ATAAGGTGCA 913 .......... .......... .......... .......... .......... .......... 249 ATTAGCCTTA GACTATACCC GAAATCCCAA AAACATATCT TAACTAAACT AAGATCATAT 973 .......... .......... .......... .......... .......... .......... 249 TATGATGAAC TTGTTTTTTT GTATTTTTGT ACACCTTTTT GTCTTACGTG GTATTCAAAT 1033 .......... .......... .......... .......... .......... .......... 249 ATCTCTCATG TGTCTCAACT GCGTGAAGTC ACGGAGTATA CCAAGTAAGT TAAAAGGAGT 1093 .......... .......... .......... .......... .......... .......... 249 ATAAAATTAC AAAAATAAAA TGAGTACAGA GGTAATAGGA CTTAAGTTTA GTTAAAAGTG 1153 .......... .......... .......... .......... .......... .......... 249 TAGTACTTGT ACATGCCCTT TTTTCATATT AAAACATTAC TATTTTATTC TTTTCTCGCT 1213 .......... .......... .......... .......... .......... .......... 249 GATTTAATCA AAATATTTGT GGTCTTAGCC ACTTAACAAT GACTTTTACT AGCTTGGAAT 1273 .......... .......... .......... .......... .......... .......... 249 TGAAGTGTAG TTGATCCATT TGAATCACAC TTTTGTTGAT CCAATGGCTC AGAGATAGCA 1333 .......... .......... .......... .......... .......... .......... 249 CTTCGCTTTA AGTGTTGAGT CATGCACAAT TTTTTTTCTC GATGTATCAA AGAGTACCTA 1393 .......... .......... .......... .......... .......... .......... 249 TGAACTATGT TCCGATTTAC TCATAAGGAA GAAAACGGGG GACGGGGTTG GGGACCGGAC 1453 .......... .......... .......... .......... .......... .......... 249 TATATGATGT GATAGTAAAC AGGAACCATT ATGTAAAAGA CTTTGGTATC TATGTTTGGT 1513 .......... .......... .......... .......... .......... .......... 249 TGGATTCTTC CAAAAACATC GCCAGGTGTG TGTCGAATCC TACAAAATGT ATGTATTTTT 1573 .......... .......... .......... .......... .......... .......... 249 GAAGGATTTG ACACGGAAAC GGAAACATTT TGGAGGGTCT AAGTAACATA GTCGCGAATT 1633 .......... .......... .......... .......... .......... .......... 249 ATAAATCACA TTAATGTCAA TCAGATTCAT ATATCTTTTG GTTTTGGTTT TGCAGAAATT 1693 ||||| .......... .......... .......... .......... .......... .....AAATT 254 GGTTTACAAT GGCAGCCAAG TGACAGAGGA ATTTATTGAA ACAGAATATT ACAAAGATCT 1753 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGTTTACAAT GGCAGCCAAG TGACAGAGGA ATTTATTGAA ACAGAATATT ACAAAGATCT 314 TAATTGCATT GACAAGCAGC ATCACACGGT TACTACTCTC ACTCACTCTT ATAACACTCT 1813 |||||||||| |||||||||| |||||||| TAATTGCATT GACAAGCAGC ATCACACG.. .......... .......... .......... 342 TATTACCTAA AAAATCCAAT TACAGTCGAA CCTCTCTATG ACGACATCGT TTGTCTGTAT 1873 .......... .......... .......... .......... .......... .......... 342 AATTTTTGGT TGCTAAACTA AACATGTTGT TATAAAGAGC ATAAAAGAGT TAATAGTAAA 1933 .......... .......... .......... .......... .......... .......... 342 AAAATACACT TACACACTTT TTCGCGGTTT CATACGCCAA CTATCATTGT TCTCTTTATC 1993 .......... .......... .......... .......... .......... .......... 342 TAAACTATCA CTTTTTTTTG TATTAAAGCA CACATCAATT CTGAGTTGGC CAAATATTTG 2053 .......... .......... .......... .......... .......... .......... 342 TCCACAATCA ACGATAGGCA TGTGTAGGCC AACTCAGCAT CGAGATATGT TTTAATACAA 2113 .......... .......... .......... .......... .......... .......... 342 AGGTAATGAT ACACGGTTGA GATGTGAAAC TCGCGAGAAA TTGATAGATT AGGTAGGTAA 2173 .......... .......... .......... .......... .......... .......... 342 ATAGAAGAAT AGATATTTGA GGTGTGAAAC ACGCGAAAAA ATGATGTTTT GTGTGTGCTT 2233 .......... .......... .......... .......... .......... .......... 342 TTTTACCATT AACTCAACAT GTATTATAAT GTAATGTGAA AACTCGGTTC TGAAGAAAAC 2293 .......... .......... .......... .......... .......... .......... 342 TTAGTTGTTA GAGTGAAATG TTGTTATTGA GGATGGATGT TACAGAGAGG TTTGATTGTG 2353 .......... .......... .......... .......... .......... .......... 342 TTCTTTTAGT GTCTATGTTG CTCGGGTTCT CTAAAAATAA TGTAATTTCG GAGGATCTGA 2413 .......... .......... .......... .......... .......... .......... 342 CATGCTCGTG GCTGTATTTT TATTGGATCC AAGAGCAATG TAGCTTTTGG TTTAAAAAAT 2473 .......... .......... .......... .......... .......... .......... 342 AAGGTTGATG AACTTTTTTT TTGTGGGAAA ATGCAGACAG GAACAGGATT TATCAAAGTG 2533 |||| |||||||||| |||||||||| .......... .......... .......... ......ACAG GAACAGGATT TATCAAAGTG 366 GAGAATAATG AGAACACTTT TAATATAGGA GCTGATTATA CTACTGATCC AAGCCATGTT 2593 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGAATAATG AGAACACTTT TAATATAGGA GCTGATTATA CTACTGATCC AAGCCATGTT 426 TACAAGGGGA ATCCAGCTAC TAATGATTGG ATTCCTTCTG CTGTTGATGA GGTATGACCA 2653 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| | TACAAGGGGA ATCCAGCTAC TAATGATTGG ATTCCTTCTG CTGTTGATGA G......... 477 AATGAAACTT TTTGTATATG TGACTAAATG TTTGCGATAA CTTGTTGAGA GGCGCGTGAG 2713 .......... .......... .......... .......... .......... .......... 477 ATGAAAAAGT CTTAGAAGTG ATCTCACATG ACACAATGAG TTCATGGTGA ACACCTGATA 2773 .......... .......... .......... .......... .......... .......... 477 GTTTAGGTTT GAAACTCGAA AGACAAAAAT AGTTTTAGGG AGGGGGTTGG GGGTTATTTT 2833 .......... .......... .......... .......... .......... .......... 477 ATTCACTCAA ATTGATTTCC ACATGTATTG CCACTTGGAA TTCTTGTGTA ATATGTCAAC 2893 .......... .......... .......... .......... .......... .......... 477 CCAAACTGTT TTATTTTATT TCTTTGGTTA TTGTAATTCT CAAAATTAAT GTCTAATTGT 2953 .......... .......... .......... .......... .......... .......... 477 CTGTCATTTT TGGTGGATCA GGTTAATTTT ATCTCAGGAA AACCACACAG AAGTGATAAC 3013 ||||||||| |||||||||| |||||||||| |||||||||| .......... .......... .GTTAATTTT ATCTCAGGAA AACCACACAG AAGTGATAAC 516 TGAAATTGAG TCTTTGATAA AGACAGTATC TGCTTATTTT GTATTTCTGT GAAGCTTGGC 3073 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAAATTGAG TCTTTGATAA AGACAGTATC TGCTTATTTT GTATTTCTGT GAAGCTTGGC 576 TTCAACTTGT GTCTCTTTTG TTTGGTTGTA TTTGAATAAC ATGCTATATG AATTATTTCA 3133 |||||||||| |||||||||| ||||||||| |||||||||| |||||||||| |||||||||| TTCAACTTGT GTCTCTTTTG ATTGGTTGTA TTTGAATAAC ATGCTATATG AATTATTTCA 636 AACGATTTTA ATGAAGAATT TA 3155 |||||||||| |||||||||| || AACGATTTTA ATGAAGAATT TA 658 hqPGS_C06HBa0054K13.1-14+_SGN-E298932+ (254 502,1689 1781,2510 2644,2975 3155) ******************************************************************************** EST sequence 4 +strand 640 n (File: SGN-E273189+) 1 TGGAAATATT AGACCAAATA GAAGTGATGT TCATTTATCA AAAGAGGAAG AAACAAAGAT 61 AGAAGAGGAA ACAAGAGAGT ATTTTGATGG CATTGCACCA AAAAGACACA CTAAACCTCA 121 AAGAAGTGAT TATTCTTCAA CTTATGTTGA TCACATCAAT CTCTACCCTT CTTCTCATGA 181 CACAATTCCC GAAAATCTCG AATTCCAACG TCTCGAAAAT GATCCTCAGA AATTGGTTTA 241 CAATGGCAGC CAAGTGACAG AGGAATTTAT TGAAACAGAA TATTACAAAG ATCTTAATTG 301 CATTGACAAG CAGCATCACA CGACAGGAAC AGGATTTATC AAAGTGGAGA ATAATGAGAA 361 CACTTTTAAT ATAGGAGCTG ATTATACTAC TGATCCAAGC CATGTTTACA AGGGGAATCC 421 AGCTACTAAT GATTGGATTC CTTCTGCTGT TGATGAGGTT AATTTTATCT CAGGAAAACC 481 ACACAGAAGT GATAACTGAA ATTGAGTCTT TGATAAAGAC AGTATCTGCT TATTTTGTAT 541 TTCTGTGAAG CTTGGCTTCA ACTTGTGTCT CTTTTGTTTG GTTGTATTTG AATAACATGC 601 TATATGAATT ATTTCAAACG ATTTTAATGA AGAATTTATA Predicted gene structure (within gDNA segment 1 to 3767): Exon 1 274 502 ( 229 n); cDNA 1 229 ( 229 n); score: 1.000 Intron 1 503 1688 (1186 n); Pd: 0.995 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 1689 1781 ( 93 n); cDNA 230 322 ( 93 n); score: 1.000 Intron 2 1782 2509 ( 728 n); Pd: 0.978 (s: 1.00), Pa: 0.994 (s: 1.00) Exon 3 2510 2644 ( 135 n); cDNA 323 457 ( 135 n); score: 1.000 Intron 3 2645 2974 ( 330 n); Pd: 1.000 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 4 2975 3157 ( 183 n); cDNA 458 640 ( 183 n); score: 1.000 MATCH C06HBa0054K13.1-14+ SGN-E273189+ 1.000 640 1.000 C PGS_C06HBa0054K13.1-14+_SGN-E273189+ (274 502,1689 1781,2510 2644,2975 3157) Alignment (genomic DNA sequence = upper lines): TGGAAATATT AGACCAAATA GAAGTGATGT TCATTTATCA AAAGAGGAAG AAACAAAGAT 333 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGAAATATT AGACCAAATA GAAGTGATGT TCATTTATCA AAAGAGGAAG AAACAAAGAT 60 AGAAGAGGAA ACAAGAGAGT ATTTTGATGG CATTGCACCA AAAAGACACA CTAAACCTCA 393 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAAGAGGAA ACAAGAGAGT ATTTTGATGG CATTGCACCA AAAAGACACA CTAAACCTCA 120 AAGAAGTGAT TATTCTTCAA CTTATGTTGA TCACATCAAT CTCTACCCTT CTTCTCATGA 453 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGAAGTGAT TATTCTTCAA CTTATGTTGA TCACATCAAT CTCTACCCTT CTTCTCATGA 180 CACAATTCCC GAAAATCTCG AATTCCAACG TCTCGAAAAT GATCCTCAGG TCTACCTCCT 513 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| CACAATTCCC GAAAATCTCG AATTCCAACG TCTCGAAAAT GATCCTCAG. .......... 229 TCTCTGCATA TGTCTGTTTT GTTTTAATCA GTAGAGGCGG ATTCAGGATT TGAACTATTA 573 .......... .......... .......... .......... .......... .......... 229 ATATATTTAA ACTCCATGCC AAGCATTGAA TCATAATAGT TTTTGTATTA GTAGGTTCCG 633 .......... .......... .......... .......... .......... .......... 229 AGTAGATTAT TTGTACATAT TAGATATACA CATATGATGT TTGAGCTAAA GTTAATGAAT 693 .......... .......... .......... .......... .......... .......... 229 TTTGTCCAAC TCTTAACTAT GCCTTGAAAA TGATTTTCAT GTTAATTAAG CTCCCCCCCA 753 .......... .......... .......... .......... .......... .......... 229 CCCCCCACCC CCACCCCTCA TTTTTCACTT TTGGGGTTTC TCCTTGTTAG TGAATAATAT 813 .......... .......... .......... .......... .......... .......... 229 ATCAGTAGAA AATTTAGATT TACAATTTCT AGTGATACAG GAACTACTTC CCACCAAAAT 873 .......... .......... .......... .......... .......... .......... 229 AGTGAGAAAC TTCATAAGTT TTTCATAGGG ATAAGGTGCA ATTAGCCTTA GACTATACCC 933 .......... .......... .......... .......... .......... .......... 229 GAAATCCCAA AAACATATCT TAACTAAACT AAGATCATAT TATGATGAAC TTGTTTTTTT 993 .......... .......... .......... .......... .......... .......... 229 GTATTTTTGT ACACCTTTTT GTCTTACGTG GTATTCAAAT ATCTCTCATG TGTCTCAACT 1053 .......... .......... .......... .......... .......... .......... 229 GCGTGAAGTC ACGGAGTATA CCAAGTAAGT TAAAAGGAGT ATAAAATTAC AAAAATAAAA 1113 .......... .......... .......... .......... .......... .......... 229 TGAGTACAGA GGTAATAGGA CTTAAGTTTA GTTAAAAGTG TAGTACTTGT ACATGCCCTT 1173 .......... .......... .......... .......... .......... .......... 229 TTTTCATATT AAAACATTAC TATTTTATTC TTTTCTCGCT GATTTAATCA AAATATTTGT 1233 .......... .......... .......... .......... .......... .......... 229 GGTCTTAGCC ACTTAACAAT GACTTTTACT AGCTTGGAAT TGAAGTGTAG TTGATCCATT 1293 .......... .......... .......... .......... .......... .......... 229 TGAATCACAC TTTTGTTGAT CCAATGGCTC AGAGATAGCA CTTCGCTTTA AGTGTTGAGT 1353 .......... .......... .......... .......... .......... .......... 229 CATGCACAAT TTTTTTTCTC GATGTATCAA AGAGTACCTA TGAACTATGT TCCGATTTAC 1413 .......... .......... .......... .......... .......... .......... 229 TCATAAGGAA GAAAACGGGG GACGGGGTTG GGGACCGGAC TATATGATGT GATAGTAAAC 1473 .......... .......... .......... .......... .......... .......... 229 AGGAACCATT ATGTAAAAGA CTTTGGTATC TATGTTTGGT TGGATTCTTC CAAAAACATC 1533 .......... .......... .......... .......... .......... .......... 229 GCCAGGTGTG TGTCGAATCC TACAAAATGT ATGTATTTTT GAAGGATTTG ACACGGAAAC 1593 .......... .......... .......... .......... .......... .......... 229 GGAAACATTT TGGAGGGTCT AAGTAACATA GTCGCGAATT ATAAATCACA TTAATGTCAA 1653 .......... .......... .......... .......... .......... .......... 229 TCAGATTCAT ATATCTTTTG GTTTTGGTTT TGCAGAAATT GGTTTACAAT GGCAGCCAAG 1713 ||||| |||||||||| |||||||||| .......... .......... .......... .....AAATT GGTTTACAAT GGCAGCCAAG 254 TGACAGAGGA ATTTATTGAA ACAGAATATT ACAAAGATCT TAATTGCATT GACAAGCAGC 1773 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGACAGAGGA ATTTATTGAA ACAGAATATT ACAAAGATCT TAATTGCATT GACAAGCAGC 314 ATCACACGGT TACTACTCTC ACTCACTCTT ATAACACTCT TATTACCTAA AAAATCCAAT 1833 |||||||| ATCACACG.. .......... .......... .......... .......... .......... 322 TACAGTCGAA CCTCTCTATG ACGACATCGT TTGTCTGTAT AATTTTTGGT TGCTAAACTA 1893 .......... .......... .......... .......... .......... .......... 322 AACATGTTGT TATAAAGAGC ATAAAAGAGT TAATAGTAAA AAAATACACT TACACACTTT 1953 .......... .......... .......... .......... .......... .......... 322 TTCGCGGTTT CATACGCCAA CTATCATTGT TCTCTTTATC TAAACTATCA CTTTTTTTTG 2013 .......... .......... .......... .......... .......... .......... 322 TATTAAAGCA CACATCAATT CTGAGTTGGC CAAATATTTG TCCACAATCA ACGATAGGCA 2073 .......... .......... .......... .......... .......... .......... 322 TGTGTAGGCC AACTCAGCAT CGAGATATGT TTTAATACAA AGGTAATGAT ACACGGTTGA 2133 .......... .......... .......... .......... .......... .......... 322 GATGTGAAAC TCGCGAGAAA TTGATAGATT AGGTAGGTAA ATAGAAGAAT AGATATTTGA 2193 .......... .......... .......... .......... .......... .......... 322 GGTGTGAAAC ACGCGAAAAA ATGATGTTTT GTGTGTGCTT TTTTACCATT AACTCAACAT 2253 .......... .......... .......... .......... .......... .......... 322 GTATTATAAT GTAATGTGAA AACTCGGTTC TGAAGAAAAC TTAGTTGTTA GAGTGAAATG 2313 .......... .......... .......... .......... .......... .......... 322 TTGTTATTGA GGATGGATGT TACAGAGAGG TTTGATTGTG TTCTTTTAGT GTCTATGTTG 2373 .......... .......... .......... .......... .......... .......... 322 CTCGGGTTCT CTAAAAATAA TGTAATTTCG GAGGATCTGA CATGCTCGTG GCTGTATTTT 2433 .......... .......... .......... .......... .......... .......... 322 TATTGGATCC AAGAGCAATG TAGCTTTTGG TTTAAAAAAT AAGGTTGATG AACTTTTTTT 2493 .......... .......... .......... .......... .......... .......... 322 TTGTGGGAAA ATGCAGACAG GAACAGGATT TATCAAAGTG GAGAATAATG AGAACACTTT 2553 |||| |||||||||| |||||||||| |||||||||| |||||||||| .......... ......ACAG GAACAGGATT TATCAAAGTG GAGAATAATG AGAACACTTT 366 TAATATAGGA GCTGATTATA CTACTGATCC AAGCCATGTT TACAAGGGGA ATCCAGCTAC 2613 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAATATAGGA GCTGATTATA CTACTGATCC AAGCCATGTT TACAAGGGGA ATCCAGCTAC 426 TAATGATTGG ATTCCTTCTG CTGTTGATGA GGTATGACCA AATGAAACTT TTTGTATATG 2673 |||||||||| |||||||||| |||||||||| | TAATGATTGG ATTCCTTCTG CTGTTGATGA G......... .......... .......... 457 TGACTAAATG TTTGCGATAA CTTGTTGAGA GGCGCGTGAG ATGAAAAAGT CTTAGAAGTG 2733 .......... .......... .......... .......... .......... .......... 457 ATCTCACATG ACACAATGAG TTCATGGTGA ACACCTGATA GTTTAGGTTT GAAACTCGAA 2793 .......... .......... .......... .......... .......... .......... 457 AGACAAAAAT AGTTTTAGGG AGGGGGTTGG GGGTTATTTT ATTCACTCAA ATTGATTTCC 2853 .......... .......... .......... .......... .......... .......... 457 ACATGTATTG CCACTTGGAA TTCTTGTGTA ATATGTCAAC CCAAACTGTT TTATTTTATT 2913 .......... .......... .......... .......... .......... .......... 457 TCTTTGGTTA TTGTAATTCT CAAAATTAAT GTCTAATTGT CTGTCATTTT TGGTGGATCA 2973 .......... .......... .......... .......... .......... .......... 457 GGTTAATTTT ATCTCAGGAA AACCACACAG AAGTGATAAC TGAAATTGAG TCTTTGATAA 3033 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .GTTAATTTT ATCTCAGGAA AACCACACAG AAGTGATAAC TGAAATTGAG TCTTTGATAA 516 AGACAGTATC TGCTTATTTT GTATTTCTGT GAAGCTTGGC TTCAACTTGT GTCTCTTTTG 3093 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGACAGTATC TGCTTATTTT GTATTTCTGT GAAGCTTGGC TTCAACTTGT GTCTCTTTTG 576 TTTGGTTGTA TTTGAATAAC ATGCTATATG AATTATTTCA AACGATTTTA ATGAAGAATT 3153 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTGGTTGTA TTTGAATAAC ATGCTATATG AATTATTTCA AACGATTTTA ATGAAGAATT 636 TATA 3157 |||| TATA 640 hqPGS_C06HBa0054K13.1-14+_SGN-E273189+ (274 502,1689 1781,2510 2644,2975 3157) ******************************************************************************** EST sequence 6 +strand 731 n (File: SGN-E374200+) 1 CAAAGATAGA AGAGGAAACA AGAGAGTATT TTGATGGCAT TGCACCAAAA AGACACACTA 61 AACCTCAAAG AAGTGATTAT TCTTCAACTT ATGTTGATCA CATCAATCTC TACCCTTCTT 121 CTCATGACAC AATTCCCGAA AATCTCGAAT TCCAACGTCT CGAAAATGAT CCTCAGAAAT 181 TGGTTTACAA TGGCAGCCAA GTGACAGAGG AATTTATTGA AACAGAATAT TACAAAGATC 241 TTAATTGCAT TGACAAGCAG CATCACACGA CAGGAACAGG ATTTATCAAA GTGGAGAATA 301 ATGAGAACAC TTTTAATATA GGAGCTGATT ATACTACTGA TCCAAGCCAT GTTTACAAGG 361 GGAATCCAGC TACTAATGAT TGGATTCCTT CTGCTGTTGA TGAGGTTAAT TTTATCTCAG 421 GAAAACCACA CAGAAGTGAT AACTGAAATT GAGTCTTTGA TAAAGACAGT ATCTGCTTAT 481 TTTGTATTTC TGTGAAGCTT GGCTTCAACT TGTGTCTCTT TTGTTTGGTT GTATTTGAAT 541 AACATGCTAT ATGAATTATT TCAAACGATT TTAATGAAGA ATTTATATTA GCCAAATATC 601 AGCTAAGGGG GTGTGATGGA ATGGTTCGAA TAACCTAAAC CATTAACCAG AGGTCTCGAA 661 TTTAAACTGT TGTGAACGAA AAATAGCATT ATAAAGGATA TCCTTTTCTT TCTGTGTGAA 721 AAAAAAAAAA A Predicted gene structure (within gDNA segment 1 to 4100): Exon 1 327 502 ( 176 n); cDNA 1 176 ( 176 n); score: 1.000 Intron 1 503 1688 (1186 n); Pd: 0.995 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 1689 1781 ( 93 n); cDNA 177 269 ( 93 n); score: 1.000 Intron 2 1782 2509 ( 728 n); Pd: 0.978 (s: 1.00), Pa: 0.994 (s: 1.00) Exon 3 2510 2644 ( 135 n); cDNA 270 404 ( 135 n); score: 1.000 Intron 3 2645 2974 ( 330 n); Pd: 1.000 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 4 2975 3298 ( 324 n); cDNA 405 728 ( 324 n); score: 0.985 MATCH C06HBa0054K13.1-14+ SGN-E374200+ 0.993 728 0.996 C PGS_C06HBa0054K13.1-14+_SGN-E374200+ (327 502,1689 1781,2510 2644,2975 3298) Alignment (genomic DNA sequence = upper lines): CAAAGATAGA AGAGGAAACA AGAGAGTATT TTGATGGCAT TGCACCAAAA AGACACACTA 386 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAAGATAGA AGAGGAAACA AGAGAGTATT TTGATGGCAT TGCACCAAAA AGACACACTA 60 AACCTCAAAG AAGTGATTAT TCTTCAACTT ATGTTGATCA CATCAATCTC TACCCTTCTT 446 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACCTCAAAG AAGTGATTAT TCTTCAACTT ATGTTGATCA CATCAATCTC TACCCTTCTT 120 CTCATGACAC AATTCCCGAA AATCTCGAAT TCCAACGTCT CGAAAATGAT CCTCAGGTCT 506 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||| CTCATGACAC AATTCCCGAA AATCTCGAAT TCCAACGTCT CGAAAATGAT CCTCAG.... 176 ACCTCCTTCT CTGCATATGT CTGTTTTGTT TTAATCAGTA GAGGCGGATT CAGGATTTGA 566 .......... .......... .......... .......... .......... .......... 176 ACTATTAATA TATTTAAACT CCATGCCAAG CATTGAATCA TAATAGTTTT TGTATTAGTA 626 .......... .......... .......... .......... .......... .......... 176 GGTTCCGAGT AGATTATTTG TACATATTAG ATATACACAT ATGATGTTTG AGCTAAAGTT 686 .......... .......... .......... .......... .......... .......... 176 AATGAATTTT GTCCAACTCT TAACTATGCC TTGAAAATGA TTTTCATGTT AATTAAGCTC 746 .......... .......... .......... .......... .......... .......... 176 CCCCCCACCC CCCACCCCCA CCCCTCATTT TTCACTTTTG GGGTTTCTCC TTGTTAGTGA 806 .......... .......... .......... .......... .......... .......... 176 ATAATATATC AGTAGAAAAT TTAGATTTAC AATTTCTAGT GATACAGGAA CTACTTCCCA 866 .......... .......... .......... .......... .......... .......... 176 CCAAAATAGT GAGAAACTTC ATAAGTTTTT CATAGGGATA AGGTGCAATT AGCCTTAGAC 926 .......... .......... .......... .......... .......... .......... 176 TATACCCGAA ATCCCAAAAA CATATCTTAA CTAAACTAAG ATCATATTAT GATGAACTTG 986 .......... .......... .......... .......... .......... .......... 176 TTTTTTTGTA TTTTTGTACA CCTTTTTGTC TTACGTGGTA TTCAAATATC TCTCATGTGT 1046 .......... .......... .......... .......... .......... .......... 176 CTCAACTGCG TGAAGTCACG GAGTATACCA AGTAAGTTAA AAGGAGTATA AAATTACAAA 1106 .......... .......... .......... .......... .......... .......... 176 AATAAAATGA GTACAGAGGT AATAGGACTT AAGTTTAGTT AAAAGTGTAG TACTTGTACA 1166 .......... .......... .......... .......... .......... .......... 176 TGCCCTTTTT TCATATTAAA ACATTACTAT TTTATTCTTT TCTCGCTGAT TTAATCAAAA 1226 .......... .......... .......... .......... .......... .......... 176 TATTTGTGGT CTTAGCCACT TAACAATGAC TTTTACTAGC TTGGAATTGA AGTGTAGTTG 1286 .......... .......... .......... .......... .......... .......... 176 ATCCATTTGA ATCACACTTT TGTTGATCCA ATGGCTCAGA GATAGCACTT CGCTTTAAGT 1346 .......... .......... .......... .......... .......... .......... 176 GTTGAGTCAT GCACAATTTT TTTTCTCGAT GTATCAAAGA GTACCTATGA ACTATGTTCC 1406 .......... .......... .......... .......... .......... .......... 176 GATTTACTCA TAAGGAAGAA AACGGGGGAC GGGGTTGGGG ACCGGACTAT ATGATGTGAT 1466 .......... .......... .......... .......... .......... .......... 176 AGTAAACAGG AACCATTATG TAAAAGACTT TGGTATCTAT GTTTGGTTGG ATTCTTCCAA 1526 .......... .......... .......... .......... .......... .......... 176 AAACATCGCC AGGTGTGTGT CGAATCCTAC AAAATGTATG TATTTTTGAA GGATTTGACA 1586 .......... .......... .......... .......... .......... .......... 176 CGGAAACGGA AACATTTTGG AGGGTCTAAG TAACATAGTC GCGAATTATA AATCACATTA 1646 .......... .......... .......... .......... .......... .......... 176 ATGTCAATCA GATTCATATA TCTTTTGGTT TTGGTTTTGC AGAAATTGGT TTACAATGGC 1706 |||||||| |||||||||| .......... .......... .......... .......... ..AAATTGGT TTACAATGGC 194 AGCCAAGTGA CAGAGGAATT TATTGAAACA GAATATTACA AAGATCTTAA TTGCATTGAC 1766 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCCAAGTGA CAGAGGAATT TATTGAAACA GAATATTACA AAGATCTTAA TTGCATTGAC 254 AAGCAGCATC ACACGGTTAC TACTCTCACT CACTCTTATA ACACTCTTAT TACCTAAAAA 1826 |||||||||| ||||| AAGCAGCATC ACACG..... .......... .......... .......... .......... 269 ATCCAATTAC AGTCGAACCT CTCTATGACG ACATCGTTTG TCTGTATAAT TTTTGGTTGC 1886 .......... .......... .......... .......... .......... .......... 269 TAAACTAAAC ATGTTGTTAT AAAGAGCATA AAAGAGTTAA TAGTAAAAAA ATACACTTAC 1946 .......... .......... .......... .......... .......... .......... 269 ACACTTTTTC GCGGTTTCAT ACGCCAACTA TCATTGTTCT CTTTATCTAA ACTATCACTT 2006 .......... .......... .......... .......... .......... .......... 269 TTTTTTGTAT TAAAGCACAC ATCAATTCTG AGTTGGCCAA ATATTTGTCC ACAATCAACG 2066 .......... .......... .......... .......... .......... .......... 269 ATAGGCATGT GTAGGCCAAC TCAGCATCGA GATATGTTTT AATACAAAGG TAATGATACA 2126 .......... .......... .......... .......... .......... .......... 269 CGGTTGAGAT GTGAAACTCG CGAGAAATTG ATAGATTAGG TAGGTAAATA GAAGAATAGA 2186 .......... .......... .......... .......... .......... .......... 269 TATTTGAGGT GTGAAACACG CGAAAAAATG ATGTTTTGTG TGTGCTTTTT TACCATTAAC 2246 .......... .......... .......... .......... .......... .......... 269 TCAACATGTA TTATAATGTA ATGTGAAAAC TCGGTTCTGA AGAAAACTTA GTTGTTAGAG 2306 .......... .......... .......... .......... .......... .......... 269 TGAAATGTTG TTATTGAGGA TGGATGTTAC AGAGAGGTTT GATTGTGTTC TTTTAGTGTC 2366 .......... .......... .......... .......... .......... .......... 269 TATGTTGCTC GGGTTCTCTA AAAATAATGT AATTTCGGAG GATCTGACAT GCTCGTGGCT 2426 .......... .......... .......... .......... .......... .......... 269 GTATTTTTAT TGGATCCAAG AGCAATGTAG CTTTTGGTTT AAAAAATAAG GTTGATGAAC 2486 .......... .......... .......... .......... .......... .......... 269 TTTTTTTTTG TGGGAAAATG CAGACAGGAA CAGGATTTAT CAAAGTGGAG AATAATGAGA 2546 ||||||| |||||||||| |||||||||| |||||||||| .......... .......... ...ACAGGAA CAGGATTTAT CAAAGTGGAG AATAATGAGA 306 ACACTTTTAA TATAGGAGCT GATTATACTA CTGATCCAAG CCATGTTTAC AAGGGGAATC 2606 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACACTTTTAA TATAGGAGCT GATTATACTA CTGATCCAAG CCATGTTTAC AAGGGGAATC 366 CAGCTACTAA TGATTGGATT CCTTCTGCTG TTGATGAGGT ATGACCAAAT GAAACTTTTT 2666 |||||||||| |||||||||| |||||||||| |||||||| CAGCTACTAA TGATTGGATT CCTTCTGCTG TTGATGAG.. .......... .......... 404 GTATATGTGA CTAAATGTTT GCGATAACTT GTTGAGAGGC GCGTGAGATG AAAAAGTCTT 2726 .......... .......... .......... .......... .......... .......... 404 AGAAGTGATC TCACATGACA CAATGAGTTC ATGGTGAACA CCTGATAGTT TAGGTTTGAA 2786 .......... .......... .......... .......... .......... .......... 404 ACTCGAAAGA CAAAAATAGT TTTAGGGAGG GGGTTGGGGG TTATTTTATT CACTCAAATT 2846 .......... .......... .......... .......... .......... .......... 404 GATTTCCACA TGTATTGCCA CTTGGAATTC TTGTGTAATA TGTCAACCCA AACTGTTTTA 2906 .......... .......... .......... .......... .......... .......... 404 TTTTATTTCT TTGGTTATTG TAATTCTCAA AATTAATGTC TAATTGTCTG TCATTTTTGG 2966 .......... .......... .......... .......... .......... .......... 404 TGGATCAGGT TAATTTTATC TCAGGAAAAC CACACAGAAG TGATAACTGA AATTGAGTCT 3026 || |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ........GT TAATTTTATC TCAGGAAAAC CACACAGAAG TGATAACTGA AATTGAGTCT 456 TTGATAAAGA CAGTATCTGC TTATTTTGTA TTTCTGTGAA GCTTGGCTTC AACTTGTGTC 3086 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGATAAAGA CAGTATCTGC TTATTTTGTA TTTCTGTGAA GCTTGGCTTC AACTTGTGTC 516 TCTTTTGTTT GGTTGTATTT GAATAACATG CTATATGAAT TATTTCAAAC GATTTTAATG 3146 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTTTTGTTT GGTTGTATTT GAATAACATG CTATATGAAT TATTTCAAAC GATTTTAATG 576 AAGAATTTAT ATTAGCCAAA TATCAGCTAA GGGGGTGTGA TGGAATGGTT CGAATAACCT 3206 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGAATTTAT ATTAGCCAAA TATCAGCTAA GGGGGTGTGA TGGAATGGTT CGAATAACCT 636 AAACCATTAA CCAGAGGTCT CGAATTTAAA CTGTTGTGAA CGAAAAATAG CATTATAAAG 3266 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAACCATTAA CCAGAGGTCT CGAATTTAAA CTGTTGTGAA CGAAAAATAG CATTATAAAG 696 GATATCCTTT TCTTCCTGTG TGAAATCTTA AA 3298 |||||||||| |||| ||||| ||||| | || GATATCCTTT TCTTTCTGTG TGAAAAAAAA AA 728 hqPGS_C06HBa0054K13.1-14+_SGN-E374200+ (327 502,1689 1781,2510 2644,2975 3298) ******************************************************************************** EST sequence 11 +strand 476 n (File: SGN-E300644+) 1 CAAAGATAGA AGAGGAAACA AGAGAGTATT TTGATGGCAT TGCACCAAAA AGACACACTA 61 AACCTCAAAG AAGTGATTAT TCTTCAACTT ATGTTGATCA CATCAATCTC TACCCTTCTT 121 CTCATGACAC AATTCCCGAA AATCTCGAAT TCCAACGTCT CGAAAATGAT CCTCAGAAAT 181 TGGTTTACAA TGGCAGCCAA GTGACAGAGG AATTTATTGA AACAGAATAT TACAAAGATC 241 TTAATTGCAT TGACAAGCAG CATCACACGA CAGGAACAGG ATTTATCAAA GTGGAGAATA 301 ATGAGAACAC TTTTAATATA GGAGCTGATT ATACTACTGA TCCAAGCCAT GTTTACAAGG 361 GGAATCCAGC TACTAATGAT TGGATTCCTT CTGCTGTTGA TGAGGTTAAT TTTATCTCAG 421 GAAAACCACA CAGAAGTGAT AACTGAAATT GAGTCTTTGA TAAAGACAGT ATCTGC Predicted gene structure (within gDNA segment 1 to 3656): Exon 1 327 502 ( 176 n); cDNA 1 176 ( 176 n); score: 1.000 Intron 1 503 1688 (1186 n); Pd: 0.995 (s: 1.00), Pa: 1.000 (s: 1.00) Exon 2 1689 1781 ( 93 n); cDNA 177 269 ( 93 n); score: 1.000 Intron 2 1782 2509 ( 728 n); Pd: 0.978 (s: 1.00), Pa: 0.994 (s: 1.00) Exon 3 2510 2644 ( 135 n); cDNA 270 404 ( 135 n); score: 1.000 Intron 3 2645 2974 ( 330 n); Pd: 1.000 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 4 2975 3046 ( 72 n); cDNA 405 476 ( 72 n); score: 1.000 MATCH C06HBa0054K13.1-14+ SGN-E300644+ 1.000 476 1.000 C PGS_C06HBa0054K13.1-14+_SGN-E300644+ (327 502,1689 1781,2510 2644,2975 3046) Alignment (genomic DNA sequence = upper lines): CAAAGATAGA AGAGGAAACA AGAGAGTATT TTGATGGCAT TGCACCAAAA AGACACACTA 386 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAAGATAGA AGAGGAAACA AGAGAGTATT TTGATGGCAT TGCACCAAAA AGACACACTA 60 AACCTCAAAG AAGTGATTAT TCTTCAACTT ATGTTGATCA CATCAATCTC TACCCTTCTT 446 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACCTCAAAG AAGTGATTAT TCTTCAACTT ATGTTGATCA CATCAATCTC TACCCTTCTT 120 CTCATGACAC AATTCCCGAA AATCTCGAAT TCCAACGTCT CGAAAATGAT CCTCAGGTCT 506 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||| CTCATGACAC AATTCCCGAA AATCTCGAAT TCCAACGTCT CGAAAATGAT CCTCAG.... 176 ACCTCCTTCT CTGCATATGT CTGTTTTGTT TTAATCAGTA GAGGCGGATT CAGGATTTGA 566 .......... .......... .......... .......... .......... .......... 176 ACTATTAATA TATTTAAACT CCATGCCAAG CATTGAATCA TAATAGTTTT TGTATTAGTA 626 .......... .......... .......... .......... .......... .......... 176 GGTTCCGAGT AGATTATTTG TACATATTAG ATATACACAT ATGATGTTTG AGCTAAAGTT 686 .......... .......... .......... .......... .......... .......... 176 AATGAATTTT GTCCAACTCT TAACTATGCC TTGAAAATGA TTTTCATGTT AATTAAGCTC 746 .......... .......... .......... .......... .......... .......... 176 CCCCCCACCC CCCACCCCCA CCCCTCATTT TTCACTTTTG GGGTTTCTCC TTGTTAGTGA 806 .......... .......... .......... .......... .......... .......... 176 ATAATATATC AGTAGAAAAT TTAGATTTAC AATTTCTAGT GATACAGGAA CTACTTCCCA 866 .......... .......... .......... .......... .......... .......... 176 CCAAAATAGT GAGAAACTTC ATAAGTTTTT CATAGGGATA AGGTGCAATT AGCCTTAGAC 926 .......... .......... .......... .......... .......... .......... 176 TATACCCGAA ATCCCAAAAA CATATCTTAA CTAAACTAAG ATCATATTAT GATGAACTTG 986 .......... .......... .......... .......... .......... .......... 176 TTTTTTTGTA TTTTTGTACA CCTTTTTGTC TTACGTGGTA TTCAAATATC TCTCATGTGT 1046 .......... .......... .......... .......... .......... .......... 176 CTCAACTGCG TGAAGTCACG GAGTATACCA AGTAAGTTAA AAGGAGTATA AAATTACAAA 1106 .......... .......... .......... .......... .......... .......... 176 AATAAAATGA GTACAGAGGT AATAGGACTT AAGTTTAGTT AAAAGTGTAG TACTTGTACA 1166 .......... .......... .......... .......... .......... .......... 176 TGCCCTTTTT TCATATTAAA ACATTACTAT TTTATTCTTT TCTCGCTGAT TTAATCAAAA 1226 .......... .......... .......... .......... .......... .......... 176 TATTTGTGGT CTTAGCCACT TAACAATGAC TTTTACTAGC TTGGAATTGA AGTGTAGTTG 1286 .......... .......... .......... .......... .......... .......... 176 ATCCATTTGA ATCACACTTT TGTTGATCCA ATGGCTCAGA GATAGCACTT CGCTTTAAGT 1346 .......... .......... .......... .......... .......... .......... 176 GTTGAGTCAT GCACAATTTT TTTTCTCGAT GTATCAAAGA GTACCTATGA ACTATGTTCC 1406 .......... .......... .......... .......... .......... .......... 176 GATTTACTCA TAAGGAAGAA AACGGGGGAC GGGGTTGGGG ACCGGACTAT ATGATGTGAT 1466 .......... .......... .......... .......... .......... .......... 176 AGTAAACAGG AACCATTATG TAAAAGACTT TGGTATCTAT GTTTGGTTGG ATTCTTCCAA 1526 .......... .......... .......... .......... .......... .......... 176 AAACATCGCC AGGTGTGTGT CGAATCCTAC AAAATGTATG TATTTTTGAA GGATTTGACA 1586 .......... .......... .......... .......... .......... .......... 176 CGGAAACGGA AACATTTTGG AGGGTCTAAG TAACATAGTC GCGAATTATA AATCACATTA 1646 .......... .......... .......... .......... .......... .......... 176 ATGTCAATCA GATTCATATA TCTTTTGGTT TTGGTTTTGC AGAAATTGGT TTACAATGGC 1706 |||||||| |||||||||| .......... .......... .......... .......... ..AAATTGGT TTACAATGGC 194 AGCCAAGTGA CAGAGGAATT TATTGAAACA GAATATTACA AAGATCTTAA TTGCATTGAC 1766 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCCAAGTGA CAGAGGAATT TATTGAAACA GAATATTACA AAGATCTTAA TTGCATTGAC 254 AAGCAGCATC ACACGGTTAC TACTCTCACT CACTCTTATA ACACTCTTAT TACCTAAAAA 1826 |||||||||| ||||| AAGCAGCATC ACACG..... .......... .......... .......... .......... 269 ATCCAATTAC AGTCGAACCT CTCTATGACG ACATCGTTTG TCTGTATAAT TTTTGGTTGC 1886 .......... .......... .......... .......... .......... .......... 269 TAAACTAAAC ATGTTGTTAT AAAGAGCATA AAAGAGTTAA TAGTAAAAAA ATACACTTAC 1946 .......... .......... .......... .......... .......... .......... 269 ACACTTTTTC GCGGTTTCAT ACGCCAACTA TCATTGTTCT CTTTATCTAA ACTATCACTT 2006 .......... .......... .......... .......... .......... .......... 269 TTTTTTGTAT TAAAGCACAC ATCAATTCTG AGTTGGCCAA ATATTTGTCC ACAATCAACG 2066 .......... .......... .......... .......... .......... .......... 269 ATAGGCATGT GTAGGCCAAC TCAGCATCGA GATATGTTTT AATACAAAGG TAATGATACA 2126 .......... .......... .......... .......... .......... .......... 269 CGGTTGAGAT GTGAAACTCG CGAGAAATTG ATAGATTAGG TAGGTAAATA GAAGAATAGA 2186 .......... .......... .......... .......... .......... .......... 269 TATTTGAGGT GTGAAACACG CGAAAAAATG ATGTTTTGTG TGTGCTTTTT TACCATTAAC 2246 .......... .......... .......... .......... .......... .......... 269 TCAACATGTA TTATAATGTA ATGTGAAAAC TCGGTTCTGA AGAAAACTTA GTTGTTAGAG 2306 .......... .......... .......... .......... .......... .......... 269 TGAAATGTTG TTATTGAGGA TGGATGTTAC AGAGAGGTTT GATTGTGTTC TTTTAGTGTC 2366 .......... .......... .......... .......... .......... .......... 269 TATGTTGCTC GGGTTCTCTA AAAATAATGT AATTTCGGAG GATCTGACAT GCTCGTGGCT 2426 .......... .......... .......... .......... .......... .......... 269 GTATTTTTAT TGGATCCAAG AGCAATGTAG CTTTTGGTTT AAAAAATAAG GTTGATGAAC 2486 .......... .......... .......... .......... .......... .......... 269 TTTTTTTTTG TGGGAAAATG CAGACAGGAA CAGGATTTAT CAAAGTGGAG AATAATGAGA 2546 ||||||| |||||||||| |||||||||| |||||||||| .......... .......... ...ACAGGAA CAGGATTTAT CAAAGTGGAG AATAATGAGA 306 ACACTTTTAA TATAGGAGCT GATTATACTA CTGATCCAAG CCATGTTTAC AAGGGGAATC 2606 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACACTTTTAA TATAGGAGCT GATTATACTA CTGATCCAAG CCATGTTTAC AAGGGGAATC 366 CAGCTACTAA TGATTGGATT CCTTCTGCTG TTGATGAGGT ATGACCAAAT GAAACTTTTT 2666 |||||||||| |||||||||| |||||||||| |||||||| CAGCTACTAA TGATTGGATT CCTTCTGCTG TTGATGAG.. .......... .......... 404 GTATATGTGA CTAAATGTTT GCGATAACTT GTTGAGAGGC GCGTGAGATG AAAAAGTCTT 2726 .......... .......... .......... .......... .......... .......... 404 AGAAGTGATC TCACATGACA CAATGAGTTC ATGGTGAACA CCTGATAGTT TAGGTTTGAA 2786 .......... .......... .......... .......... .......... .......... 404 ACTCGAAAGA CAAAAATAGT TTTAGGGAGG GGGTTGGGGG TTATTTTATT CACTCAAATT 2846 .......... .......... .......... .......... .......... .......... 404 GATTTCCACA TGTATTGCCA CTTGGAATTC TTGTGTAATA TGTCAACCCA AACTGTTTTA 2906 .......... .......... .......... .......... .......... .......... 404 TTTTATTTCT TTGGTTATTG TAATTCTCAA AATTAATGTC TAATTGTCTG TCATTTTTGG 2966 .......... .......... .......... .......... .......... .......... 404 TGGATCAGGT TAATTTTATC TCAGGAAAAC CACACAGAAG TGATAACTGA AATTGAGTCT 3026 || |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ........GT TAATTTTATC TCAGGAAAAC CACACAGAAG TGATAACTGA AATTGAGTCT 456 TTGATAAAGA CAGTATCTGC 3046 |||||||||| |||||||||| TTGATAAAGA CAGTATCTGC 476 hqPGS_C06HBa0054K13.1-14+_SGN-E300644+ (327 502,1689 1781,2510 2644,2975 3046) ******************************************************************************** EST sequence 1 -strand 737 n (File: SGN-E578306-) 1 GCTAGATGAC CTGAACCAGA AGAGGCAGTG GCGATCATGT CTCTTTNGTG TTTCAGCAAA 61 AGGAGACTTC TGAATCTTTC CTCACGCCAA AGCTTTCTCA GGCTAAAAAG AGATTACATG 121 AAACTGCAAT AAGACTTGGG GAGCTTCAGG CTCAGTTTAA GCTGCCGATT GACCCAAAGG 181 AGTATGCCCA AGAGAACCTT AAGTTTGGTT TGGTTGAAGT GGTATATGAA TGGGCAAAGG 241 GGACCCCATT TGCTGAGATA TGTGAACTCA CAGATGTCCC TGAAGGTGTG ATAGTGAGGA 301 CTATTGTTAG ATTAGACGAG ACTTGTCGTG AATTTAGAAA TGCTGCTGCA ATTATGGGCA 361 ACTCTGCACT GTACAAGAAA ATGGAAACTG CATCTAATGT GATCAAGCGC GATATCGTGT 421 TTGCAGCTAG CTTGTATATT ACCGGAGTTT GATTAGAGGT CAGGAAGCCT TGATTTCATT 481 TGCAATTCTA AAGGACCTGA CGATACACAT GTTGTACCCT AGAATATGTT CGCCAAGGTG 541 TGGACTTTGA GCAAGGCTAC CCTACAATTT GGCTAATTTG TACAGAAATT CAAGTCTTTC 601 AAATGTACAT TTAGCAATTG ACAGTAGATT ACACCCTGAT TAGCACAGAG AGATACATGA 661 ACTTAAAAGG ATTTACTGTA TGACATTCTC TTAAAATTTA GGTATGATTT TGAAGTTCTG 721 CATCTAAAAA AAAAAAA Predicted gene structure (within gDNA segment 6770 to 2771): Exon 1 6026 5913 ( 114 n); cDNA 1 112 ( 112 n); score: 0.947 Intron 1 5912 4246 (1667 n); Pd: 0.989 (s: 1.00), Pa: 0.996 (s: 1.00) Exon 2 4245 4119 ( 127 n); cDNA 113 239 ( 127 n); score: 1.000 Intron 2 4118 3965 ( 154 n); Pd: 0.097 (s: 1.00), Pa: 0.989 (s: 1.00) Exon 3 3964 3482 ( 483 n); cDNA 240 725 ( 486 n); score: 0.970 PPA cDNA 726 737 MATCH C06HBa0054K13.1-14- SGN-E578306- 0.972 724 0.982 C PGS_C06HBa0054K13.1-14-_SGN-E578306- (6026 5913,4245 4119,3964 3482) Alignment (genomic DNA sequence = upper lines): GCTTGATGAC CTGGAGCCAG AAGAGGCAGT GGCGATCATG TCTTCCTTTG TGTTTCAGCA 5967 ||| |||||| || || |||| |||||||||| |||||||||| || || || | |||||||||| GCTAGATGAC CT-GAACCAG AAGAGGCAGT GGCGATCATG TC-TCTTTNG TGTTTCAGCA 58 AAAGGAGACT TCTGAATCTT TCCTCACGCC AAAGCTTTCT CAGGCTAAAA AGAGGTTATT 5907 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||| AAAGGAGACT TCTGAATCTT TCCTCACGCC AAAGCTTTCT CAGGCTAAAA AGAG...... 112 TTCTTCTCAA ATATTTGGTG TGATATGCTC ATGTTGACGT GTTGTCATTT TTCCTGTTCA 5847 .......... .......... .......... .......... .......... .......... 112 TCTATGATAT ATATATATTC AATTGTTTTT GGTATTTTTG GATAAAAGTT TTTATTGAAG 5787 .......... .......... .......... .......... .......... .......... 112 ATTTTTGATA AGATTTTGTG TTTGCGGTGT CTGAGTTTTT GAGGGATCAA ACCTGTATAT 5727 .......... .......... .......... .......... .......... .......... 112 CAGCCATGTA TATTTCTTGT AATGTTTCTT TAATGGATGG GCTTAAAAGA CTGTGAAGAC 5667 .......... .......... .......... .......... .......... .......... 112 TTCTCCTCGT TATACATTAG GTTTAATGAT AGAGAACTCA TCAAAATTAA TTGATGAGAT 5607 .......... .......... .......... .......... .......... .......... 112 GATTGGAATA TGATATCTAT AAAAGATGTA CTTTCCTTTT TATCACTGCT TTGTTGGACA 5547 .......... .......... .......... .......... .......... .......... 112 ATTTAGGATT CTAACTTGGT ATTTATATCT AGGATGGAAT AAAATACATC ATTCTTGTTT 5487 .......... .......... .......... .......... .......... .......... 112 TTTATGAGAA CAGAACATAT CATGTTAAAT GTATTCTCAT GTTTCACAGA ATTGCATATG 5427 .......... .......... .......... .......... .......... .......... 112 CAAGTTGTAC GGGATGCTAG TTACTAACTT GGGTGTATCT CAATAATTGG ATTATAATAT 5367 .......... .......... .......... .......... .......... .......... 112 ATCACATTTT TCACGGAATT GCACATCACA AGGTCACAGA TCAAAGAGCT ATGACACCTT 5307 .......... .......... .......... .......... .......... .......... 112 TTCTTGATAT AATAAAGTGG GTGCTGTGAA AGTAGAGATA AGAGTAAATG TGTGGTAAGC 5247 .......... .......... .......... .......... .......... .......... 112 AATTTTTGTT TAGTGTCCCA CGTTGATGGT GGAAATGGGC TGTTGTTTCT TATATGGTTT 5187 .......... .......... .......... .......... .......... .......... 112 TGGGAAATCC TCATTGCATG AATTAACTTT TGGGGTTTAG TTAGGCCAAA GGTCCATTTC 5127 .......... .......... .......... .......... .......... .......... 112 TCGTCATGGT ATTAAAGCCA GACCTGTTCC TGTTCTTGGT TCACTCAGCA TTGGGCCCCA 5067 .......... .......... .......... .......... .......... .......... 112 CTGTTTGTTG TTCGCTCTCC AATTATCCAG TCCTGAGCGT GTGAGTAATG TTAAATGTTC 5007 .......... .......... .......... .......... .......... .......... 112 CACATTGGTG GTGAAAATGT GTTGTTGTCT CCTTATATGG TCCTGTGCGA TTCTTACTTC 4947 .......... .......... .......... .......... .......... .......... 112 ATGAGTTTTG GAGTTGATTT AGGCTCAAGA CTCATTTCTT ATCAAGTTGT TTCTTCTTTA 4887 .......... .......... .......... .......... .......... .......... 112 TTATAGTGAA TACACTTTTT AGAGGGAAAC GAATTTTCTG GCCAGCTGCT AATTCTCTTA 4827 .......... .......... .......... .......... .......... .......... 112 TATTGTCAGT GTGTACTCTG CTTTTCCTTT ATTGAAAGAT TTTTTGAAAA TGGGATTTGG 4767 .......... .......... .......... .......... .......... .......... 112 TCAGATTTAC GAATCAAGCA TGTAGTGGTC TAAGACCTGG TTGCTGCTTT TGGGTCTTTC 4707 .......... .......... .......... .......... .......... .......... 112 TCTGAATGCA CAACTGCTAG TGGGATGTCT TTTGACTGCA AAATATCCAA ATTTCCTTCT 4647 .......... .......... .......... .......... .......... .......... 112 GTCAAAAAGT TACTGAACAA CAGAGAATAG AGTTTTACAC ACTTCAGATC TTCCACAGAA 4587 .......... .......... .......... .......... .......... .......... 112 CATTTCTGTC AGTATTTGTG CCAACAAAGG CTGTTACTGT TTAAACGGTG TATGGCCAAT 4527 .......... .......... .......... .......... .......... .......... 112 TGGCTCTCTT TTACTTCTGA AGTCATGTCA TCTCCTCCTT GCACTTGTCA ATGTTGTCTA 4467 .......... .......... .......... .......... .......... .......... 112 CTTGTTTTTA TTTGACTAGT GCAACTGTAG TTGTTGATTA CGGTAATTTC ATTCTTATAA 4407 .......... .......... .......... .......... .......... .......... 112 CTTCATTTGT ACTTTTTCTT ATTGTTTCAA GTCATTCTGA TGTATTCTGT AGGTATTTTC 4347 .......... .......... .......... .......... .......... .......... 112 TCATTAATTA CCATGAGCTG TAACTTAACC CTGTTCTTTG ATATTATAGT TTTTCTTTTT 4287 .......... .......... .......... .......... .......... .......... 112 ACTTTGTTCT CAATGACAAT ATCATTCTCG TGGCATTTCA GATTACATGA AACTGCAATA 4227 ||||||||| |||||||||| .......... .......... .......... .......... .ATTACATGA AACTGCAATA 131 AGACTTGGGG AGCTTCAGGC TCAGTTTAAG CTGCCGATTG ACCCAAAGGA GTATGCCCAA 4167 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGACTTGGGG AGCTTCAGGC TCAGTTTAAG CTGCCGATTG ACCCAAAGGA GTATGCCCAA 191 GAGAACCTTA AGTTTGGTTT GGTTGAAGTG GTATATGAAT GGGCAAAGGT TCTCTCTCTC 4107 |||||||||| |||||||||| |||||||||| |||||||||| |||||||| GAGAACCTTA AGTTTGGTTT GGTTGAAGTG GTATATGAAT GGGCAAAG.. .......... 239 TCTCACTCAC ACACGCACAC AAAAAAAATT AAGGATTTGC ATGTGTGGTT GCGTATGACT 4047 .......... .......... .......... .......... .......... .......... 239 TAATTATCAT AATATCCTAC CTGTTGCTTG ATTCTTCCGT TCTTGAGTGT GGGGTGTCTC 3987 .......... .......... .......... .......... .......... .......... 239 TAATTCTGCT TCCGTCTTGC AGGGGACCCC ATTTGCTGAG ATATGTGAAC TCACAGATGT 3927 |||||||| |||||||||| |||||||||| |||||||||| .......... .......... ..GGGACCCC ATTTGCTGAG ATATGTGAAC TCACAGATGT 277 CCCTGAAGGT GTTATAGTGA GGACTATTGT TAGATTAGAC GAGACTTGTC GTGAATTTAG 3867 |||||||||| || ||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCCTGAAGGT GTGATAGTGA GGACTATTGT TAGATTAGAC GAGACTTGTC GTGAATTTAG 337 AAATGCTGCT GCAATTATGG GCAACTCTGC ACTGTACAAG AAAATGGAAA CTGCATCTAA 3807 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAATGCTGCT GCAATTATGG GCAACTCTGC ACTGTACAAG AAAATGGAAA CTGCATCTAA 397 TGTGATCAAG CGCGATATCG TGTTTGCAGC TAGCTTATAT ATTACCGGAG TTTGATT--A 3749 |||||||||| |||||||||| |||||||||| |||||| ||| |||||||||| ||||||| | TGTGATCAAG CGCGATATCG TGTTTGCAGC TAGCTTGTAT ATTACCGGAG TTTGATTAGA 457 GGTCCGGAAG CCTTGATTTC ATTTGCAATT CTAAAGGACC TGACGATACA CATGTTGTAC 3689 |||| ||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGTCAGGAAG CCTTGATTTC ATTTGCAATT CTAAAGGACC TGACGATACA CATGTTGTAC 517 ACTAGAATAT GTTCGCCAAG GTGTGGACTT TGAGCAAGGC TACCCTACAA TTTGGCTAAT 3629 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCTAGAATAT GTTCGCCAAG GTGTGGACTT TGAGCAAGGC TACCCTACAA TTTGGCTAAT 577 TTGTACAGAA ATTCAAGTCT TTCAAATGTA CATTTAGCAA TCGACAGTAG ATTACACCAT 3569 |||||||||| |||||||||| |||||||||| |||||||||| | |||||||| |||||||| | TTGTACAGAA ATTCAAGTCT TTCAAATGTA CATTTAGCAA TTGACAGTAG ATTACACCCT 637 GATTAGCACA GAGAGATACA TAAACTT-AA AGGATTTACT GTATGACATT CTCTTAAAAT 3510 |||||||||| |||||||||| | ||||| || |||||||||| |||||||||| |||||||||| GATTAGCACA GAGAGATACA TGAACTTAAA AGGATTTACT GTATGACATT CTCTTAAAAT 697 TTAGGTATGA TTTTGAAGTT CTGCATCT 3482 |||||||||| |||||||||| |||||||| TTAGGTATGA TTTTGAAGTT CTGCATCT 725 hqPGS_C06HBa0054K13.1-14-_SGN-E578306- (6026 5913,4245 4119,3964 3482) Total number of EST alignments reported: 12 ________________________________________________________________________________ Predicted gene locations (2) in segment 1 to 7572: PGL 1 (+ strand): 111 3298 AGS-1 (111 502,1689 1781,2510 2644,2975 3298) SCR (e 1.000 d 0.995 a 1.000,e 1.000 d 0.978 a 0.994,e 1.000 d 1.000 a 0.998,e 0.985) Exon 1 111 502 ( 392 n); score: 1.000 Intron 1 503 1688 (1186 n); Pd: 0.995 Pa: 1.000 Exon 2 1689 1781 ( 93 n); score: 1.000 Intron 2 1782 2509 ( 728 n); Pd: 0.978 Pa: 0.994 Exon 3 2510 2644 ( 135 n); score: 1.000 Intron 3 2645 2974 ( 330 n); Pd: 1.000 Pa: 0.998 Exon 4 2975 3298 ( 324 n); score: 0.985 PGS (111 502,1689 1774) SGN-E286685+ PGS (190 502,1689 1781,2510 2644,2975 3151) SGN-E340816+ PGS (191 502,1689 1781,2510 2624) SGN-E294546+ PGS (191 502,1689 1781,2510 2566) SGN-E296694+ PGS (207 502,1689 1781,2510 2644,2975 3146) SGN-E341789+ PGS (249 502,1689 1781,2510 2644,2975 3151) SGN-E339334- PGS (254 502,1689 1781,2510 2644,2975 3155) SGN-E298932+ PGS (274 502,1689 1781,2510 2644,2975 3157) SGN-E273189+ PGS (327 502,1689 1781,2510 2644,2975 3298) SGN-E374200+ PGS (327 502,1689 1781,2510 2644,2975 3046) SGN-E300644+ 3-phase translation of AGS-1 (+strand): . . . . . . 111 GAAAAAATATCTACCCCAAAAGATATCTAACTACTTTACAACATTTGTAGCACATGATAT E K I S T P K D I - L L Y N I C S T - Y K K Y L P Q K I S N Y F T T F V A H D I K N I Y P K R Y L T T L Q H L - H M I . . . . . . 171 TATTACATTGATGAACCCCTTCAACTAACATCAAACAAATAATATTACCCTCTTTTTTTT Y Y I D E P L Q L T S N K - Y Y P L F F I T L M N P F N - H Q T N N I T L F F F L L H - - T P S T N I K Q I I L P S F F . . . . . . 231 TCAAGATTTTTTACAAGAAGAAGAAGAAGAAAATGGAAGTGAATGGAAATATTAGACCAA S R F F T R R R R R K W K - M E I L D Q Q D F L Q E E E E E N G S E W K Y - T K F K I F Y K K K K K K M E V N G N I R P . . . . . . 291 ATAGAAGTGATGTTCATTTATCAAAAGAGGAAGAAACAAAGATAGAAGAGGAAACAAGAG I E V M F I Y Q K R K K Q R - K R K Q E - K - C S F I K R G R N K D R R G N K R N R S D V H L S K E E E T K I E E E T R . . . . . . 351 AGTATTTTGATGGCATTGCACCAAAAAGACACACTAAACCTCAAAGAAGTGATTATTCTT S I L M A L H Q K D T L N L K E V I I L V F - W H C T K K T H - T S K K - L F F E Y F D G I A P K R H T K P Q R S D Y S . . . . . . 411 CAACTTATGTTGATCACATCAATCTCTACCCTTCTTCTCATGACACAATTCCCGAAAATC Q L M L I T S I S T L L L M T Q F P K I N L C - S H Q S L P F F S - H N S R K S S T Y V D H I N L Y P S S H D T I P E N . . . . : . . 471 TCGAATTCCAACGTCTCGAAAATGATCCTCAG : AAATTGGTTTACAATGGCAGCCAAGTGA S N S N V S K M I L R : N W F T M A A K - R I P T S R K - S S : E I G L Q W Q P S D L E F Q R L E N D P Q : K L V Y N G S Q V . . . . . . 1717 CAGAGGAATTTATTGAAACAGAATATTACAAAGATCTTAATTGCATTGACAAGCAGCATC Q R N L L K Q N I T K I L I A L T S S I R G I Y - N R I L Q R S - L H - Q A A S T E E F I E T E Y Y K D L N C I D K Q H . : . . . . . 1777 ACACG : ACAGGAACAGGATTTATCAAAGTGGAGAATAATGAGAACACTTTTAATATAGGAG T R : Q E Q D L S K W R I M R T L L I - E H : D R N R I Y Q S G E - - E H F - Y R S H T : T G T G F I K V E N N E N T F N I G . . . . . . 2565 CTGATTATACTACTGATCCAAGCCATGTTTACAAGGGGAATCCAGCTACTAATGATTGGA L I I L L I Q A M F T R G I Q L L M I G - L Y Y - S K P C L Q G E S S Y - - L D A D Y T T D P S H V Y K G N P A T N D W . . : . . . . 2625 TTCCTTCTGCTGTTGATGAG : GTTAATTTTATCTCAGGAAAACCACACAGAAGTGATAACT F L L L L M R : L I L S Q E N H T E V I T S F C C - - : G - F Y L R K T T Q K - - L I P S A V D E : V N F I S G K P H R S D N . . . . . . 3015 GAAATTGAGTCTTTGATAAAGACAGTATCTGCTTATTTTGTATTTCTGTGAAGCTTGGCT E I E S L I K T V S A Y F V F L - S L A K L S L - - R Q Y L L I L Y F C E A W L - N - V F D K D S I C L F C I S V K L G . . . . . . 3075 TCAACTTGTGTCTCTTTTGTTTGGTTGTATTTGAATAACATGCTATATGAATTATTTCAA S T C V S F V W L Y L N N M L Y E L F Q Q L V S L L F G C I - I T C Y M N Y F K F N L C L F C L V V F E - H A I - I I S . . . . . . 3135 ACGATTTTAATGAAGAATTTATATTAGCCAAATATCAGCTAAGGGGGTGTGATGGAATGG T I L M K N L Y - P N I S - G G V M E W R F - - R I Y I S Q I S A K G V - W N G N D F N E E F I L A K Y Q L R G C D G M . . . . . . 3195 TTCGAATAACCTAAACCATTAACCAGAGGTCTCGAATTTAAACTGTTGTGAACGAAAAAT F E - P K P L T R G L E F K L L - T K N S N N L N H - P E V S N L N C C E R K I V R I T - T I N Q R S R I - T V V N E K . . . . . 3255 AGCATTATAAAGGATATCCTTTTCTTCCTGTGTGAAATCTTAAA S I I K D I L F F L C E I L A L - R I S F S S C V K S - - H Y K G Y P F L P V - N L K Maximal non-overlapping open reading frames (>= 64 codons): >C06HBa0054K13.1-14+_PGL-1_AGS-1_PPS_1 (185 502,1689 1781,2510 2644,2975 3016) (frame '0'; 585 bp, 195 residues) 1 TPSTNIKQII LPSFFFKIFY KKKKKKMEVN GNIRPNRSDV HLSKEEETKI EEETREYFDG 61 IAPKRHTKPQ RSDYSSTYVD HINLYPSSHD TIPENLEFQR LENDPQKLVY NGSQVTEEFI 121 ETEYYKDLNC IDKQHHTTGT GFIKVENNEN TFNIGADYTT DPSHVYKGNP ATNDWIPSAV 181 DEVNFISGKP HRSDN- AGS-2 (223 502,1689 1865) SCR (e 1.000 d 0.995 a 1.000,e 0.994) Exon 1 223 502 ( 280 n); score: 1.000 Intron 1 503 1688 (1186 n); Pd: 0.995 Pa: 1.000 Exon 2 1689 1865 ( 177 n); score: 0.994 PGS (223 502,1689 1865) SGN-E341086+ 3-phase translation of AGS-2 (+strand): . . . . . . 223 TTTTTTTTTCAAGATTTTTTACAAGAAGAAGAAGAAGAAAATGGAAGTGAATGGAAATAT F F F Q D F L Q E E E E E N G S E W K Y F F F K I F Y K K K K K K M E V N G N I F F S R F F T R R R R R K W K - M E I . . . . . . 283 TAGACCAAATAGAAGTGATGTTCATTTATCAAAAGAGGAAGAAACAAAGATAGAAGAGGA - T K - K - C S F I K R G R N K D R R G R P N R S D V H L S K E E E T K I E E E L D Q I E V M F I Y Q K R K K Q R - K R . . . . . . 343 AACAAGAGAGTATTTTGATGGCATTGCACCAAAAAGACACACTAAACCTCAAAGAAGTGA N K R V F - W H C T K K T H - T S K K - T R E Y F D G I A P K R H T K P Q R S D K Q E S I L M A L H Q K D T L N L K E V . . . . . . 403 TTATTCTTCAACTTATGTTGATCACATCAATCTCTACCCTTCTTCTCATGACACAATTCC L F F N L C - S H Q S L P F F S - H N S Y S S T Y V D H I N L Y P S S H D T I P I I L Q L M L I T S I S T L L L M T Q F . . . . : . . 463 CGAAAATCTCGAATTCCAACGTCTCGAAAATGATCCTCAG : AAATTGGTTTACAATGGCAG R K S R I P T S R K - S S : E I G L Q W Q E N L E F Q R L E N D P Q : K L V Y N G S P K I S N S N V S K M I L R : N W F T M A . . . . . . 1709 CCAAGTGACAGAGGAATTTATTGAAACAGAATATTACAAAGATCTTAATTGCATTGACAA P S D R G I Y - N R I L Q R S - L H - Q Q V T E E F I E T E Y Y K D L N C I D K A K - Q R N L L K Q N I T K I L I A L T . . . . . . 1769 GCAGCATCACACGGTTACTACTCTCACTCACTCTTATAACACTCTTATTACCTAAAAAAT A A S H G Y Y S H S L L - H S Y Y L K N Q H H T V T T L T H S Y N T L I T - K I S S I T R L L L S L T L I T L L L P K K . . . . 1829 CCAATTACAGTCGAACCTCTCTATGACGACATCGTTT P I T V E P L Y D D I V Q L Q S N L S M T T S F S N Y S R T S L - R H R Maximal non-overlapping open reading frames (>= 64 codons): >C06HBa0054K13.1-14+_PGL-1_AGS-2_PPS_1 (224 502,1689 1823) (frame '2'; 411 bp, 137 residues) 1 FFFKIFYKKK KKKMEVNGNI RPNRSDVHLS KEEETKIEEE TREYFDGIAP KRHTKPQRSD 61 YSSTYVDHIN LYPSSHDTIP ENLEFQRLEN DPQKLVYNGS QVTEEFIETE YYKDLNCIDK 121 QHHTVTTLTH SYNTLIT- PGL 2 (- strand): 6026 3482 AGS-1 (6026 5913,4245 4119,3964 3482) SCR (e 0.947 d 0.989 a 0.996,e 1.000 d 0.097 a 0.989,e 0.970) Exon 1 6026 5913 ( 114 n); score: 0.947 Intron 1 5912 4246 (1667 n); Pd: 0.989 Pa: 0.996 Exon 2 4245 4119 ( 127 n); score: 1.000 Intron 2 4118 3965 ( 154 n); Pd: 0.097 Pa: 0.989 Exon 3 3964 3482 ( 483 n); score: 0.970 PGS (6026 5913,4245 4119,3964 3482) SGN-E578306- 3-phase translation of AGS-1 (-strand): . . . . . . 6026 GCTTGATGACCTGGAGCCAGAAGAGGCAGTGGCGATCATGTCTTCCTTTGTGTTTCAGCA A - - P G A R R G S G D H V F L C V S A L D D L E P E E A V A I M S S F V F Q Q L M T W S Q K R Q W R S C L P L C F S . . . . . . : 5966 AAAGGAGACTTCTGAATCTTTCCTCACGCCAAAGCTTTCTCAGGCTAAAAAGAG : ATTACA K G D F - I F P H A K A F S G - K E : I T K E T S E S F L T P K L S Q A K K R : L H K R R L L N L S S R Q S F L R L K R : D Y . . . . . . 4239 TGAAACTGCAATAAGACTTGGGGAGCTTCAGGCTCAGTTTAAGCTGCCGATTGACCCAAA - N C N K T W G A S G S V - A A D - P K E T A I R L G E L Q A Q F K L P I D P K M K L Q - D L G S F R L S L S C R L T Q . . . . . . 4179 GGAGTATGCCCAAGAGAACCTTAAGTTTGGTTTGGTTGAAGTGGTATATGAATGGGCAAA G V C P R E P - V W F G - S G I - M G K E Y A Q E N L K F G L V E V V Y E W A K R S M P K R T L S L V W L K W Y M N G Q . : . . . . . 4119 G : GGGACCCCATTTGCTGAGATATGTGAACTCACAGATGTCCCTGAAGGTGTTATAGTGAG : G D P I C - D M - T H R C P - R C Y S E : G T P F A E I C E L T D V P E G V I V R R : G P H L L R Y V N S Q M S L K V L - - . . . . . . 3905 GACTATTGTTAGATTAGACGAGACTTGTCGTGAATTTAGAAATGCTGCTGCAATTATGGG D Y C - I R R D L S - I - K C C C N Y G T I V R L D E T C R E F R N A A A I M G G L L L D - T R L V V N L E M L L Q L W . . . . . . 3845 CAACTCTGCACTGTACAAGAAAATGGAAACTGCATCTAATGTGATCAAGCGCGATATCGT Q L C T V Q E N G N C I - C D Q A R Y R N S A L Y K K M E T A S N V I K R D I V A T L H C T R K W K L H L M - S S A I S . . . . . . 3785 GTTTGCAGCTAGCTTATATATTACCGGAGTTTGATTAGGTCCGGAAGCCTTGATTTCATT V C S - L I Y Y R S L I R S G S L D F I F A A S L Y I T G V - L G P E A L I S F C L Q L A Y I L P E F D - V R K P - F H . . . . . . 3725 TGCAATTCTAAAGGACCTGACGATACACATGTTGTACACTAGAATATGTTCGCCAAGGTG C N S K G P D D T H V V H - N M F A K V A I L K D L T I H M L Y T R I C S P R C L Q F - R T - R Y T C C T L E Y V R Q G . . . . . . 3665 TGGACTTTGAGCAAGGCTACCCTACAATTTGGCTAATTTGTACAGAAATTCAAGTCTTTC W T L S K A T L Q F G - F V Q K F K S F G L - A R L P Y N L A N L Y R N S S L S V D F E Q G Y P T I W L I C T E I Q V F . . . . . . 3605 AAATGTACATTTAGCAATCGACAGTAGATTACACCATGATTAGCACAGAGAGATACATAA K C T F S N R Q - I T P - L A Q R D T - N V H L A I D S R L H H D - H R E I H K Q M Y I - Q S T V D Y T M I S T E R Y I . . . . . . 3545 ACTTAAAGGATTTACTGTATGACATTCTCTTAAAATTTAGGTATGATTTTGAAGTTCTGC T - R I Y C M T F S - N L G M I L K F C L K G F T V - H S L K I - V - F - S S A N L K D L L Y D I L L K F R Y D F E V L . 3485 ATCT I S H Maximal non-overlapping open reading frames (>= 64 codons): >C06HBa0054K13.1-14-_PGL-2_AGS-1_PPS_1 (6025 5913,4245 4119,3964 3752) (frame '2'; 450 bp, 150 residues) 1 LDDLEPEEAV AIMSSFVFQQ KETSESFLTP KLSQAKKRLH ETAIRLGELQ AQFKLPIDPK 61 EYAQENLKFG LVEVVYEWAK GTPFAEICEL TDVPEGVIVR TIVRLDETCR EFRNAAAIMG 121 NSALYKKMET ASNVIKRDIV FAASLYITGV - ... finished at: Mon Aug 28 22:13:20 2006 ________________________________________________________________________________ Sequence 15: C06HBa0054K13.1-15, from 1 to 4628, both strands analyzed. ... started at: Mon Aug 28 22:13:20 2006 EST library file: /tmp/cxgn-bacpublish-resources-LF1h7Z/sgn_ests; matching gDNA +strand ... ... found all matches, elapsed seconds = 5 ... matches indexed, elapsed seconds = 5 HitsTableSize = 1 EST library file: /tmp/cxgn-bacpublish-resources-LF1h7Z/sgn_ests; matching gDNA -strand ... ... found all matches, elapsed seconds = 5 ... matches indexed, elapsed seconds = 5 HitsTableSize = 0 ******************************************************************************** EST sequence 1 -strand 701 n (File: SGN-E578389-) 1 TCAAATAATT ATAATAAATA AGTCAAAAAA ATAATTTATG TATTAAAAAA ATTTGAAATA 61 TACCTTGAAC TTTGAAAAAA GAATCATATA TGCCCCTAAA TATATTTTTT TTTAAAATTA 121 AAGTAAAATT ATAAATTTAA AAGTAATTTT TTCACTTTCG TTAAATGAAG GGTATATATG 181 AGCTCATTTT GTAACGGCAG AGGTATATGT GAACCATTTG TATAACGGTA AGGGTATATA 241 TGAGCCACTT TCATAACGAG GGGTATATCA GTTTCAAATG ACAAAGTTGA GGGGTATATC 301 ATACCCTTTT CCCATAATAT TATTCATTTT TGGGTTGACG GGTCAAACCT TGGGCTGCTT 361 AGGACTTGAT TAGACCGCTA TTTTATTGAC TCTTTAATTA ATGGGCAACT TTCACATATA 421 ACAAACAAAA AATTCATATT TGTATGCTAT AACAAAGTTT GCATAATTGC GCTCCATAGC 481 AAACATAAAA TTGTATAATT CGCTGACCTA AATTGTATAA TTCGCTGGCC TATTTCGCTG 541 CAATTGTATA ATTCGCTATC CTATTTAACT ACAATTGTAT AATTCGCTGC CTATTTCGCT 601 GCAATATTAT TATAAAATTT GCTTTGCATA TAATTGAACC GAATTAAAAT GTATGTATAT 661 TGCATAATTA TAAGTGTATA GCAATAAGAT ATATGTTTTT C Predicted gene structure (within gDNA segment 4628 to 1): Exon 1 4624 4604 ( 21 n); cDNA 157 177 ( 21 n); score: 0.762 Intron 1 4603 3671 ( 933 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.80) Exon 2 3670 3534 ( 137 n); cDNA 178 314 ( 137 n); score: 0.876 Intron 2 3533 2571 ( 963 n); Pd: 0.900 (s: 0.92), Pa: 0.000 (s: 0) Exon 3 2570 2545 ( 26 n); cDNA 315 340 ( 26 n); score: 0.731 MATCH C06HBa0054K13.1-15- SGN-E578389- 0.876 184 0.262 C PGS_C06HBa0054K13.1-15-_SGN-E578389- (4624 4604,3670 3534,2570 2545) Alignment (genomic DNA sequence = upper lines): TTCTTGAAAT TCAAGGTATA TTGATTAATC CGAGTATTTC TATAACGCAG TTTTAATAGG 4565 ||| | |||| | |||||| | TTCGTTAAAT GAAGGGTATA T......... .......... .......... .......... 177 ATATTCACTG GGTTTTTTCC TTTCTCTATT TTATTAGTCT TTATTTGTTC CTTTTTATCC 4505 .......... .......... .......... .......... .......... .......... 177 CTTTTACTTT TTTTTCTTAG TTTGTTTTTC ATTTTTTAAA AAGTGAAATT TCAACAATAA 4445 .......... .......... .......... .......... .......... .......... 177 ATATGATGAA AATATATAAT TTACAGGTAA TAGTAAAATA ATTTTACTTT AAGAATCACA 4385 .......... .......... .......... .......... .......... .......... 177 CATGGTATTT TTCGCAGCTA TAATTTTTTT ATACAATATA TTTATTCTCT TATTTTCACA 4325 .......... .......... .......... .......... .......... .......... 177 TATAGGCTTT TAAATTGTAT ACATCATTAT TTCTCTTACA AGAGTCTTTC CTTTTCCTAT 4265 .......... .......... .......... .......... .......... .......... 177 ATAATTTTTG GGTGATTGAA GATTAAGATC TTAGTTAGAG AACATATTTT AATCTTAGTA 4205 .......... .......... .......... .......... .......... .......... 177 TGTCTTAGAT ATTATTTTCT CTCCAGTTTG AATTTGTAAT ATTTTTTCCT TCAAATTATA 4145 .......... .......... .......... .......... .......... .......... 177 TATGACTTAT CATAAGCATG TTTATAATGT TATTATTGGT TCATCTGTTT TTTTTTGTTA 4085 .......... .......... .......... .......... .......... .......... 177 ATTTATTTTC TGTTTATTAA AAATTAAATT TGAAAACTAA AAGATATTAA TTATTTTTAC 4025 .......... .......... .......... .......... .......... .......... 177 TATTTGAATA GAGTGATGAT TTTTTCATGA ATAATGAAAC ATCATATCAT CAAAAACTAA 3965 .......... .......... .......... .......... .......... .......... 177 CACAAAATAG TGCTATATTT CATGTAAATA CAATAAACTA TACTCATATA TAGATCCATG 3905 .......... .......... .......... .......... .......... .......... 177 GACTTATCAC AAGTAATTAC ATTCTCAATA CAAAATGTGT AATTGAAATG TATATTTCTG 3845 .......... .......... .......... .......... .......... .......... 177 ATAAATTTGT CTTGCGCCTT TGTTATTTTA TTATAGGCAT TAGATACATT TATTATTATT 3785 .......... .......... .......... .......... .......... .......... 177 TTTCTATCAT GAATTCATAG ACATATTTTA CAGTCATGAT TCACATATTT CTGGTTTGCT 3725 .......... .......... .......... .......... .......... .......... 177 AGCAAATTCA CCATTCTATT TTATGATCTA TTTTTAATGA ATAAAAATAA ATAGAAAAAT 3665 | | .......... .......... .......... .......... .......... ....ATGAGC 183 TAATTTTGTA ATGGCAGGGA TATATGTGAG CCGTTTGTAT AACGGTAAGG GCATATGTGA 3605 | |||||||| | ||||| | ||||||||| || ||||||| |||||||||| | |||| ||| TCATTTTGTA ACGGCAGAGG TATATGTGAA CCATTTGTAT AACGGTAAGG GTATATATGA 243 GCCACTTTTA TAACGAGGGG TATATCAGCT CCAAATGACA AAGTTGAGGG GTATATCAAA 3545 |||||||| | |||||||||| |||||||| | ||||||||| |||||||||| |||||||| | GCCACTTTCA TAACGAGGGG TATATCAGTT TCAAATGACA AAGTTGAGGG GTATATCATA 303 CCCTTTTCCC GATATCATTT GATGGTTGAT GCAAGTCTTT CATTAGTTGC TTTAGCCATG 3485 |||||||||| CCCTTTTCCC A......... .......... .......... .......... .......... 314 TGCTCTCTTG TGATGCCATC GTTCCTGCTC GATATTCTGC TTAGTTTAAA GTGAAACAGT 3425 .......... .......... .......... .......... .......... .......... 314 TGGTTGTCTT CTGCTGCACC ATGATATTGC GGCTGATCCA AGATTGAAAT ATATTCGGTG 3365 .......... .......... .......... .......... .......... .......... 314 GTTGATCTTC GAGTATCATG GTCACCAGCA TAATCCGCAT CATAGTATCC GATTATCTTG 3305 .......... .......... .......... .......... .......... .......... 314 CAGGGAGCTC CTTTCATATA GAATAGTCCA TAGTCAAGAG TTCCTTTCAT ATACCTTAAT 3245 .......... .......... .......... .......... .......... .......... 314 ATCTTCCTTA TTGCTTCCAA TGAGGCTTCT TTGGTTTCTG CATAAATCGG CTAACAATTC 3185 .......... .......... .......... .......... .......... .......... 314 TAACAGCGAA TGCAATATCT GCTCTGGTCA ATGTTAAGTA GATAAGACTA CCGACAATTT 3125 .......... .......... .......... .......... .......... .......... 314 GACAATACAT TGTTTCTTCC TCCAAGTCTT TGCCTTCACG GGAACATAGT TTTAAGTTAG 3065 .......... .......... .......... .......... .......... .......... 314 GCTCCATCGG TGTAGAAAAT GTGTTGCAAC CCATCATTCC ATATTTTTGG ATTAGATCTC 3005 .......... .......... .......... .......... .......... .......... 314 TCGCATACTC TTGTTGTCCA AGGAATAATC CATCCTTTGT TTTTTCAATC TCAATAATAG 2945 .......... .......... .......... .......... .......... .......... 314 GAGTAACTAT AATTAGCACT AATTATGTGA CTCATGTGTA ATTATTTATT CATGTTTTCT 2885 .......... .......... .......... .......... .......... .......... 314 CTATATATAT CGGATGTACA ACCCTTAATC AATAAGACTC ATTATTATAT CAGGGTATCA 2825 .......... .......... .......... .......... .......... .......... 314 GAGCTAAGGT TAAACTCTTC CAAAACCTAA AAAAAACCCT AACCTTCTTC TTCTTCTTTG 2765 .......... .......... .......... .......... .......... .......... 314 TTGCTGCCGA TCAACAACAA AACAAAAAAA AAATTCGGCT GCCTCTCTTC ATCAACAATG 2705 .......... .......... .......... .......... .......... .......... 314 GCAGCCGATC CCCTTGCCAT CCTTCCCTCA GGTGTGAAAT TGTTCCTTCG CAATCTTCAC 2645 .......... .......... .......... .......... .......... .......... 314 AATCTCATCC CAGAAAAATT AACCGATCAT AATTATCCAG CCTGGTCGAA TAGCGTCAAG 2585 .......... .......... .......... .......... .......... .......... 314 ATGGCGCTCT CCACAAATCT TCTTCTTGGT TGGGTCGACG 2545 ||| | | ||| | | ||||| |||| .......... ....TAATAT TATTCATTTT TGGGTTGACG 340 hqPGS_C06HBa0054K13.1-15-_SGN-E578389- (4624 4604,3670 3534,2570 2545) Total number of EST alignments reported: 1 ________________________________________________________________________________ Predicted gene locations (1) in segment 1 to 4628: PGL 1 (- strand): 4624 2545 AGS-1 (4624 4604,3670 3534,2570 2545) SCR (e 0.762 d 0.000 a 0.000,e 0.876 d 0.900 a 0.000,e 0.731) Exon 1 4624 4604 ( 21 n); score: 0.762 Intron 1 4603 3671 ( 933 n); Pd: 0.000 Pa: 0.000 Exon 2 3670 3534 ( 137 n); score: 0.876 Intron 2 3533 2571 ( 963 n); Pd: 0.900 Pa: 0.000 Exon 3 2570 2545 ( 26 n); score: 0.731 PGS (4624 4604,3670 3534,2570 2545) SGN-E578389- 3-phase translation of AGS-1 (-strand): . . . : . . . 4624 TTCTTGAAATTCAAGGTATAT : AAAAATTAATTTTGTAATGGCAGGGATATATGTGAGCCG F L K F K V Y : K N - F C N G R D I C E P S - N S R Y I : K I N F V M A G I Y V S R L E I Q G I : - K L I L - W Q G Y M - A . . . . . . 3631 TTTGTATAACGGTAAGGGCATATGTGAGCCACTTTTATAACGAGGGGTATATCAGCTCCA F V - R - G H M - A T F I T R G I S A P L Y N G K G I C E P L L - R G V Y Q L Q V C I T V R A Y V S H F Y N E G Y I S S . . . . : . . 3571 AATGACAAAGTTGAGGGGTATATCAAACCCTTTTCCCG : AAATCTTCTTCTTGGTTGGGTC N D K V E G Y I K P F S R : N L L L G W V M T K L R G I S N P F P : E I F F L V G S K - Q S - G V Y Q T L F P : K S S S W L G . 2548 GACG D T R Maximal non-overlapping open reading frames (>= 64 codons): none ... finished at: Mon Aug 28 22:13:30 2006 ________________________________________________________________________________ Sequence 16: C06HBa0054K13.1-16, from 1 to 28288, both strands analyzed. ... started at: Mon Aug 28 22:13:30 2006 EST library file: /tmp/cxgn-bacpublish-resources-LF1h7Z/sgn_ests; matching gDNA +strand ... ... found all matches, elapsed seconds = 4 ... matches indexed, elapsed seconds = 4 HitsTableSize = 17 EST library file: /tmp/cxgn-bacpublish-resources-LF1h7Z/sgn_ests; matching gDNA -strand ... ... found all matches, elapsed seconds = 4 ... matches indexed, elapsed seconds = 4 HitsTableSize = 12 ******************************************************************************** EST sequence 10 -strand 552 n (File: SGN-E205976-) 1 CTTACTAACA CTCAACCCTA CAAAGAGCCA AACCCACCCT TTGTACAATA AACTGTAAAC 61 TACAATTAAG AACAAAAACA AGACAAATAG TTCTACACGA TAAAACCTTC TTACTCAAGA 121 ATGTTTTACA CGTAGTAATC CTATCAACCT TGAAGACTTC AATTTGATGA ATAATTCTCC 181 CTTGTTCTCT GCATGAAGTC CTCATTTTCT TCATCAGCGT CTTCTTCTTC TTATAGAGTT 241 CCTTTTGCCT TCAGTCCTTA TCAGATAAGA TAAGGAAGTT ATTATTAAAC AAGGATTCCC 301 TTTTAAAGCA CAATCCTTAT TATATACAAC TTCTTTCCTT ACTAATATAT TTAAGGTTTT 361 CCTTATTTGT ATCAACTTAT ACCTTTAATA TATTATTTTT GGCTTTGACA AATCACTCTA 421 TTTTCTTGAT TACTTGACAG ACCCATTTTA CTCGATCTTG GACTCGATCT TGGCTTCTTT 481 TGCTGCGTAC ATTTGCTATT GATTATTTGT GCTTCTTGTC TTCTTGTGTG CAGCAAACTG 541 AGAAACGAGC AA Predicted gene structure (within gDNA segment 4340 to 1931): Exon 1 3649 3133 ( 517 n); cDNA 1 517 ( 517 n); score: 0.884 MATCH C06HBa0054K13.1-16- SGN-E205976- 0.884 517 0.937 C PGS_C06HBa0054K13.1-16-_SGN-E205976- (3649 3133) Alignment (genomic DNA sequence = upper lines): CTCACGAAAA CTCAACCCTA CAAAGAGCCA AACCCACCCT TTGTATAATA AACTGTAAAT 3590 || || || | |||||||||| |||||||||| |||||||||| ||||| |||| ||||||||| CTTACTAACA CTCAACCCTA CAAAGAGCCA AACCCACCCT TTGTACAATA AACTGTAAAC 60 TACAATCAAG AAC-AAAACA AGA-AGATAG TTCTACGCGT TAAAAACCTT CTCACTCAAG 3532 |||||| ||| ||| |||||| ||| | |||| |||||| || | |||||||| || ||||||| TACAATTAAG AACAAAAACA AGACAAATAG TTCTACACGA T-AAAACCTT CTTACTCAAG 119 AACGTTTTAA ACGTATCAAA CCTATCGATC TTGAAGACTT CAGTTTGATG AATAATTATC 3472 || |||||| ||||| || |||||| | | |||||||||| || ||||||| ||||||| || AATGTTTTAC ACGTAGTAAT CCTATCAACC TTGAAGACTT CAATTTGATG AATAATTCTC 179 ACTTTTCTCT CAATGTGAAG TCATGGGATT CTTCATCAAC ATCGTCCTCT TCTTATAGAG 3412 ||| | ||| | ||||| || | || |||||||| | || || ||| |||||||||| CCTTGT-TCT CTGCATGAAG TCCTCATTTT CTTCATCAGC GTCTTCTTCT TCTTATAGAG 238 TTTCTTTTGC CTTAAATCCT TATCAGATAA GGTAAGGAAC TTATTGTTAA ACAAGGATTC 3352 || ||||||| ||| | |||| |||||||||| | ||||||| ||||| |||| |||||||||| TTCCTTTTGC CTTCAGTCCT TATCAGATAA GATAAGGAAG TTATTATTAA ACAAGGATTC 298 CCTTTTAAAG TACAATCCTT ATTATATACA ACTTCCTTCC TTAATAATAT ATTTAAGGTT 3292 |||||||||| ||||||||| |||||||||| ||||| |||| ||| |||||| |||||||||| CCTTTTAAAG CACAATCCTT ATTATATACA ACTTCTTTCC TTACTAATAT ATTTAAGGTT 358 TTCCTTATGT GTATCAACTT ATACCTTTAA TATATTATTT TTGGCTTTGA CAAATAACTA 3232 |||||||| | |||||||||| |||||||||| |||||||||| |||||||||| ||||| ||| TTCCTTATTT GTATCAACTT ATACCTTTAA TATATTATTT TTGGCTTTGA CAAATCACTC 418 TATTTTCTTG ATTACTTGGC TGATCCATTT TACTCGATCT TGGACTCGAG CTTGGCTTCT 3172 |||||||||| |||||||| | || |||||| |||||||||| ||||||||| |||||||||| TATTTTCTTG ATTACTTGAC AGACCCATTT TACTCGATCT TGGACTCGAT CTTGGCTTCT 478 TTTGCTGCGT ATATTTGCTA CTGATTATTT GCGCTTCTT 3133 |||||||||| | |||||||| ||||||||| | ||||||| TTTGCTGCGT ACATTTGCTA TTGATTATTT GTGCTTCTT 517 hqPGS_C06HBa0054K13.1-16-_SGN-E205976- (3649 3133) ******************************************************************************** EST sequence 9 -strand 552 n (File: SGN-E205976-) 1 CTTACTAACA CTCAACCCTA CAAAGAGCCA AACCCACCCT TTGTACAATA AACTGTAAAC 61 TACAATTAAG AACAAAAACA AGACAAATAG TTCTACACGA TAAAACCTTC TTACTCAAGA 121 ATGTTTTACA CGTAGTAATC CTATCAACCT TGAAGACTTC AATTTGATGA ATAATTCTCC 181 CTTGTTCTCT GCATGAAGTC CTCATTTTCT TCATCAGCGT CTTCTTCTTC TTATAGAGTT 241 CCTTTTGCCT TCAGTCCTTA TCAGATAAGA TAAGGAAGTT ATTATTAAAC AAGGATTCCC 301 TTTTAAAGCA CAATCCTTAT TATATACAAC TTCTTTCCTT ACTAATATAT TTAAGGTTTT 361 CCTTATTTGT ATCAACTTAT ACCTTTAATA TATTATTTTT GGCTTTGACA AATCACTCTA 421 TTTTCTTGAT TACTTGACAG ACCCATTTTA CTCGATCTTG GACTCGATCT TGGCTTCTTT 481 TGCTGCGTAC ATTTGCTATT GATTATTTGT GCTTCTTGTC TTCTTGTGTG CAGCAAACTG 541 AGAAACGAGC AA Predicted gene structure (within gDNA segment 12404 to 10076): Exon 1 11713 11197 ( 517 n); cDNA 1 517 ( 517 n); score: 0.896 MATCH C06HBa0054K13.1-16- SGN-E205976- 0.896 517 0.937 C PGS_C06HBa0054K13.1-16-_SGN-E205976- (11713 11197) Alignment (genomic DNA sequence = upper lines): CTCACGAAAA CTCAACCCTA CAAAGAGCCA AACCCACCCT TTGTATAATA AACTGTAAAT 11654 || || || | |||||||||| |||||||||| |||||||||| ||||| |||| ||||||||| CTTACTAACA CTCAACCCTA CAAAGAGCCA AACCCACCCT TTGTACAATA AACTGTAAAC 60 TACAATCAAG AAC-AAAACA AGA-AGATAG TTCTACACGT TAAAAACCTT CTCACTCAAG 11596 |||||| ||| ||| |||||| ||| | |||| ||||||||| | |||||||| || ||||||| TACAATTAAG AACAAAAACA AGACAAATAG TTCTACACGA T-AAAACCTT CTTACTCAAG 119 AACGTTTTAA ACGTAGCAAA CCTATTGATC TTGAAGACTT TAGTTTGATG AATAATTCTC 11536 || |||||| |||||| || ||||| | | |||||||||| | ||||||| |||||||||| AATGTTTTAC ACGTAGTAAT CCTATCAACC TTGAAGACTT CAATTTGATG AATAATTCTC 179 ACTTTTCTCT CTATGTGAAG TCGTGGGATT CTTCATCAGC ATCGTCCTCT TCTTATAGAG 11476 ||| | ||| || ||||| || | || |||||||||| || || ||| |||||||||| CCTTGT-TCT CTGCATGAAG TCCTCATTTT CTTCATCAGC GTCTTCTTCT TCTTATAGAG 238 TTTCTTTTGC CTTAAGTCCT TATCAGATGA GGTAAGAAAG TTATTGTTAA ACAAGGATTC 11416 || ||||||| ||| |||||| |||||||| | | |||| ||| ||||| |||| |||||||||| TTCCTTTTGC CTTCAGTCCT TATCAGATAA GATAAGGAAG TTATTATTAA ACAAGGATTC 298 CCTTTTAAAG TACAATCCTT ATTATATACA ACTTCCTTCC TTAATAATAT ATTTAAGGTT 11356 |||||||||| ||||||||| |||||||||| ||||| |||| ||| |||||| |||||||||| CCTTTTAAAG CACAATCCTT ATTATATACA ACTTCTTTCC TTACTAATAT ATTTAAGGTT 358 TTCCTTATTT GTATCAACTT ATACCTTTAA TATATTATTT TTGGCTTTGA CAAATAACTC 11296 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||| |||| TTCCTTATTT GTATCAACTT ATACCTTTAA TATATTATTT TTGGCTTTGA CAAATCACTC 418 TATTTTCTTG ATTACTTGGC TGACCCATTT TACTCGATCA TGGACTCGAG CTTGGCTTCT 11236 |||||||||| |||||||| | ||||||||| ||||||||| ||||||||| |||||||||| TATTTTCTTG ATTACTTGAC AGACCCATTT TACTCGATCT TGGACTCGAT CTTGGCTTCT 478 TTTGCTGCGT ACATTTGCTA CTGATTATTT GCGCTTCTT 11197 |||||||||| |||||||||| ||||||||| | ||||||| TTTGCTGCGT ACATTTGCTA TTGATTATTT GTGCTTCTT 517 hqPGS_C06HBa0054K13.1-16-_SGN-E205976- (11713 11197) ******************************************************************************** EST sequence 6 +strand 628 n (File: SGN-E212888+) 1 AGGGATCACT TGCAATGGGC GCCATAGAGT CACTGCTTTA GACATTTCTA GCATGCAACT 61 TCATGGTACC ATTCCTCCAC ACCTTGGAAA TCTCTCATTT CTCGTATCCC TTGACATTAG 121 TAACAACACT TTCCATGGAC ATCTCTCCCA AGAGTTGACT CACTTGCGGA GGTTGAAATT 181 GATTGATGTT ACAAGAAACA ATTTTAGTGG TGCCATCCCA TCGTTCTTAA GTTCGTTACC 241 TAATCTTCAA TTCCTTTACC TTTCAAACAA CCAATATTCA GGGGAAATTC CATCTTCTCT 301 TTCCAATCTA ACAAATCTTC AAGAGTTGAG AATACAGAGG AATTTTCTTC AAGGAAAAAT 361 CCCTCCTGAA ATTGGTAATC TTCGTTACTT GACTTTTTTA GACCTGCAAG GTAATAGACT 421 TACTGGCTCT ATACCGCCGT CAATCTTCAA CATGACTTCA TTGACAAGAC TTGCTATAAT 481 ACACAATCGT CTTGTCGGGA AACTTCCTGT TGATATTTGT GACAATCTAC CAAATCTTCA 541 AGTGCTTTTA CTCTCATCAA ACAACCTGAA TGGACGAAAT ACACAAATTT ACAGAAATGC 601 TCAAACCTAC AACTGNTGAC ATTGTCTG Predicted gene structure (within gDNA segment 12245 to 19158): Exon 1 13077 13707 ( 631 n); cDNA 2 628 ( 627 n); score: 0.733 MATCH C06HBa0054K13.1-16+ SGN-E212888+ 0.733 631 1.005 C PGS_C06HBa0054K13.1-16+_SGN-E212888+ (13077 13707) Alignment (genomic DNA sequence = upper lines): GGAATCACTT GCAGCTCCCG TCACCATCGA GTCACTGCTT TAGACATTTC AAGCATGCAA 13136 || ||||||| ||| | | | |||| || |||||||||| |||||||||| ||||||||| GGGATCACTT GCA-AT--GG GCGCCATAGA GTCACTGCTT TAGACATTTC TAGCATGCAA 58 CTTTATGGTA CCATTCCTCC ACACCTTGGA AACCTCTCAT TTATTTCATC GCTTGACATC 13196 ||| |||||| |||||||||| |||||||||| || ||||||| || | ||| |||||||| CTTCATGGTA CCATTCCTCC ACACCTTGGA AATCTCTCAT TTCTCGTATC CCTTGACATT 118 AGTAACAACA CTTTCCATGG AGAGTTGCCA CTAGAGTTGG TTCGTTTGCA GAGGTTGAAA 13256 |||||||||| |||||||||| | | | | | ||||||| || |||| |||||||||| AGTAACAACA CTTTCCATGG ACATCTCTCC CAAGAGTTGA CTCACTTGCG GAGGTTGAAA 178 TTCTTTAATA CTAAAAACAA TAACTTCACC GGAGCCATTC CATCATTTTT AAGTTTGTTA 13316 || || || || || || || || | || ||||| | |||| || || ||||| |||| TTGATTGATG TTACAAGAAA CAATTTTAGT GGTGCCATCC CATCGTTCTT AAGTTCGTTA 238 CCAAACCTAC GCTTTCTGTA CCTATCGAAT AACCAATTTT CGGGTAAAAT TCCATCCTCC 13376 || || || | || || || ||| || || ||||||| || | || |||| |||||| || CCTAATCTTC AATTCCTTTA CCTTTCAAAC AACCAATATT CAGGGGAAAT TCCATCTTCT 298 CTTTCCAATC TGACAAAACT GCAAGTGTTG TCAATACAGA GTAATTATAT TGAAGGAGAG 13436 |||||||||| | ||||| || |||| |||| |||||||| | |||| | | | ||||| | CTTTCCAATC TAACAAATCT TCAAGAGTTG AGAATACAGA GGAATTTTCT TCAAGGAAAA 358 ATCCCTCAAG AACTCGGTGA TCTTCGTTCC TTGATTATCC TAAACCTGCA ATATAATCAG 13496 ||||||| | || | ||| | |||||||| | |||| | | || ||||||| | |||| ATCCCTCCTG AAATTGGTAA TCTTCGTTAC TTGACTTTTT TAGACCTGCA AGGTAATAGA 418 CTTAGTGGCT CTATACCATC TTCAATCTTT GACATCACTA CAATG-CAAG TAATTGCTCT 13555 |||| ||||| ||||||| | |||||||| |||| ||| || || |||| | ||||| | CTTACTGGCT CTATACCGCC GTCAATCTTC AACATGACTT CATTGACAAG -ACTTGCTAT 477 TAGTGGCAAC AATCTTACTG GAAAGATTCC AATCACGATA TGTGATCATC TTCCAGACTT 13615 | ||| |||| | | || |||| | || ||||| ||| | ||| | | AATACACAAT CGTCTTGTCG GGAAACTTCC TGTTGATATT TGTGACAATC TACCAAATCT 537 GGAAGGACTT TACCTCGGCA GAAACTCCCT TGATGGAGTT ATTCCACCAA ACCTGGAGAA 13675 ||| ||| | ||| |||| ||| ||||| | | || ||| | | |||| TCAAGTGCTT TTACTCTCAT CAAACAACCT GAATGGACGA AATACA-CAA ATTTACAGAA 596 ATGCAGAAAG CTTCAAATAT TGGAATTGAC TG 13707 |||| ||| || ||| | || |||| | || ATGCTCAAAC CTACAACTGN TGACATTGTC TG 628 hqPGS_C06HBa0054K13.1-16+_SGN-E212888+ (13077 13707) ******************************************************************************** EST sequence 15 +strand 780 n (File: SGN-E543331+) 1 CATAAACATG CTTAATTAGT TCTTGTTCAT CCATTTTCTT GTTTATTTGA GCCAATAATT 61 AATCAAATCA CAATTTACTA TGGAGGAAAT TTCTGAAGGA ATTCGAGCAA CTTCGTTAAG 121 GATCAATGAT TGTCCATCAC CATTACCATC CGCTATTGCT TCGTCTGCTA CTCCTCAAAA 181 ACACTTAAAA TGCTTTATCA GCGTACATTT CGTGCAAAAG GTATTTAAAT TCACAAAATT 241 CATCTTAATG ATTAAATTTG AGTCTCGAAT TTTCAAGTGT CAGATGAGCA GGTTGAGTCA 301 ATTTCGACGA GTTTTAGTTA TATAGATGGT GATGTTTGAG CTCAAACCAA AATGGAATCA 361 TTCAAGATTT TGGATCCATG AACCATTGTC TGATGATATG AATTGTATAA TTACATCATT 421 TATGTTGGAT TTTATTTTGT CCTAAATTTC TTATCATAAA TAGGTTTTTC TTTTAGGAAA 481 AAAGTTTTGA ATTGACTAAT TCTTTTTCTG GTAGGAAAAT GTTCCCGTGT ATTCTTAGTG 541 AATTGGTTGA GGTTGTTTCT CTCTGTATTT TGTACTCTCA TATTAATAGT GGATTGCTCA 601 TCTCCATTGT GGACGTAGGT CGATTGACCG AACCACGTTA AATCTTTGTG TCTTTTGGTA 661 TATTTCTCGT TGTCTTTCAT ACTCGTGGTC TTTTGAGGTT TGCTTTGCTA GCTTTCCGCG 721 TTTACCCTGC TTATTTCCGG TTCTAACAAT TTAAACGCGA AAACATTGTT ATTGTAGTTG Predicted gene structure (within gDNA segment 11616 to 19022): Exon 1 14234 14264 ( 31 n); cDNA 360 390 ( 31 n); score: 0.742 Intron 1 14265 15639 (1375 n); Pd: 0.000 (s: 0), Pa: 0.999 (s: 0) Exon 2 15640 15668 ( 29 n); cDNA 391 417 ( 27 n); score: 0.621 Intron 2 15669 16000 ( 332 n); Pd: 0.000 (s: 0), Pa: 0.716 (s: 0) Exon 3 16001 16005 ( 5 n); cDNA 418 422 ( 5 n); score: 0.600 Intron 3 16006 17329 (1324 n); Pd: 0.900 (s: 0), Pa: 0.000 (s: 0.89) Exon 4 17330 17426 ( 97 n); cDNA 423 523 ( 101 n); score: 0.794 Intron 4 17427 17562 ( 136 n); Pd: 0.000 (s: 0.69), Pa: 0.000 (s: 0.94) Exon 5 17563 17787 ( 225 n); cDNA 524 749 ( 226 n); score: 0.924 MATCH C06HBa0054K13.1-16+ SGN-E543331+ 0.885 387 0.496 C PGS_C06HBa0054K13.1-16+_SGN-E543331+ (14234 14264,15640 15668,16001 16005,17330 17426,17563 17787) Alignment (genomic DNA sequence = upper lines): ATTCAACATT GAGCTTCCTT GAATCATTGA CAAACTGTAG GAATCTAAGA GTACTCACGC 14293 |||||| ||| | ||| | ||| ||||| | ATTCAAGATT TTGGATCCAT GAACCATTGT C......... .......... .......... 390 TTGGTGGTAA TCCGTTGGAT GGTGTTTTGC CTGCATCTGT TGGTAATTTC TCAAACTCCT 14353 .......... .......... .......... .......... .......... .......... 390 TGCAAATTTT TGAAGCATCT AAATGTAAAC TGAAGGGTGT CATTTCAAAA CAAATTACTA 14413 .......... .......... .......... .......... .......... .......... 390 ATCTTACTGG ATTGACAAGG ATGAGTCTGT CGAACAATCA GTTGATAGGT CATATTCCAA 14473 .......... .......... .......... .......... .......... .......... 390 AAACAGTGCA AGGAATGCTG AACCTTCAAG AACTTTACCT AGGAAGCAAC AAGTTAGAAG 14533 .......... .......... .......... .......... .......... .......... 390 GAGCCATACC AGATGTTATC TGCAGTTTAC AGTATCTTGG TGCATTAGAA TTGTCAGAAA 14593 .......... .......... .......... .......... .......... .......... 390 ATCAATTTTC TAGTTCCGTT CCACCATGCT TAGGGAATGT TACTAGTTTG AGGACACTCT 14653 .......... .......... .......... .......... .......... .......... 390 ATCTAGATAA CAACAAGCTG GATTCTAGAT TACCTGCAAG ATTGGGGGGA CTTCAAAACA 14713 .......... .......... .......... .......... .......... .......... 390 TCATAGAGTT CAATATTTCA TCCAATTATT TGAGTGGAGA AATTCCGCTA GAGAGCGGAA 14773 .......... .......... .......... .......... .......... .......... 390 ACTTGAAGGG TGCAACACTG ATTGATCTGT CAAATAATTA TTTTTCTGGT AAGATTCCTA 14833 .......... .......... .......... .......... .......... .......... 390 GTACTCTAGG GGGCCTAGAT AAATTAATTT ATCTTTCTCT AGCACATAAT AGATTAGAAG 14893 .......... .......... .......... .......... .......... .......... 390 GGCCTATTCC TGAATCATTT GACAAATTGT TGGCATTGGA ATACTTGGAT TTGTCCTATA 14953 .......... .......... .......... .......... .......... .......... 390 ACAATCTTAG CGGTGAAATT CCAAAGTCAT TAGAAGCTCT TGTGTATCTC AAATACCTAA 15013 .......... .......... .......... .......... .......... .......... 390 ATTTCTCTTT CAATGAACTC AGTGGAGAAA TTCCCACTGA TGGTCCCTTT GCAAATGTAA 15073 .......... .......... .......... .......... .......... .......... 390 CCAGTCAGTC TTTCTTGTCC AATGATGCAC TTTGTGGTGA CTCCCGGTTT AACGTAAAAC 15133 .......... .......... .......... .......... .......... .......... 390 CATGCCCAAC CAAATCTACA AAGAAATCAA GAAGAAAAAG AGTGCTTACA GGTTTATATA 15193 .......... .......... .......... .......... .......... .......... 390 TTCTATTAGG GATAGGATCA CTCTTCATGT TGACTGTTGG ATTTGTCGTG TTAAGATTGA 15253 .......... .......... .......... .......... .......... .......... 390 GAAACACAAA GAAGAATGCT AGTCAAAAGG ATCTGTCTCT CGTAAGAGGG CATGAAAGAA 15313 .......... .......... .......... .......... .......... .......... 390 TTTCCTATTA TGAACTTGAA CAGGCAACTG AAGGATTCAA CGAAACCAAC TTGCTTGGTA 15373 .......... .......... .......... .......... .......... .......... 390 ATGGGAGTTT CAGCAGGGTT TATAAAGGGG TACTTAAGGA TGGTATCATT TTTGCAGCAA 15433 .......... .......... .......... .......... .......... .......... 390 AGGTATTCAA TGTGCAATTG GAGGGTGCAT TCAAAAGTTT TGACACGGAA TGTGAGATAC 15493 .......... .......... .......... .......... .......... .......... 390 TTCGCAATCT TCGCCACAGA AATCTTGCCA AAGTCATTAC CAGCTGCTCC AATCTTGATT 15553 .......... .......... .......... .......... .......... .......... 390 TCAAGGCCCT AGTGTTGGAA TACATGCCCA ACGGGACACT TGATAAATGG TTATACTCTC 15613 .......... .......... .......... .......... .......... .......... 390 ACAATTTGTT CTTGAACTTA TTGCAGAGAT TGGATGTAAT GATAGATGTT GCATCTGCAA 15673 ||| ||| ||| || | || |||| .......... .......... ......TGAT GATATG-AAT TGTATA-ATT ACATC..... 417 TGAACTATCT CCACAATGGC TATTCAACGC CTGTAGTGCA TTGTGACTTG AAACCAAGTA 15733 .......... .......... .......... .......... .......... .......... 417 ATGTCTTGTT AGATGAAGAA ATGGTTGCTC ATGTAAGTGA TTTTGGCATT GCAAAAATGT 15793 .......... .......... .......... .......... .......... .......... 417 TAGGTGCAGG GGAGGCTTTT GTTCAAACAA GGACAGTTGC AACCATTGGA TATATTGCTC 15853 .......... .......... .......... .......... .......... .......... 417 CAGGTATATT TTAAGTTTTC TCGTATCGCC TTTAAATACT CAAAACAATT CTTTCCCCTA 15913 .......... .......... .......... .......... .......... .......... 417 TGTATAAATT GATTTGTGGT CATTTTCGAC CATGAATACA GAGTATGGAC AAGATGGAAT 15973 .......... .......... .......... .......... .......... .......... 417 AGTATCCACG AGTTGTGATG TTTATAGTTT TGGTATCCTG ATGATGGAGA CGTTCACACG 16033 || | .......... .......... .......ATT TA........ .......... .......... 422 AACAAGACCA AGTGATGACA TATTTACTGG AGACTTGAGC ATACAAAGCT GGATTAGTGA 16093 .......... .......... .......... .......... .......... .......... 422 TTCCTTTCCG GGTGAACTTC ACAAGGTGGT GGATTCTAAT TTGGTACAGC CCGGAGATGA 16153 .......... .......... .......... .......... .......... .......... 422 ACAAATCGCT GCAAAGATGC AATGTTTGTC ATCTGTCATG GAATTAGCTT TGAAGTGCAC 16213 .......... .......... .......... .......... .......... .......... 422 TTTAGTGAGA CCTGATGCAA GAATTAGCAT GAAGGATGCT CTTTCAACAC TCAAAAAGAT 16273 .......... .......... .......... .......... .......... .......... 422 GAGGCTACAG CTTGTTAGTA GTCGGCATTA GGTGGAATCA TTACCAACCT TCTCTTGTAT 16333 .......... .......... .......... .......... .......... .......... 422 GTTATTTAGT TACCAGTTTT CTCTCTTATG TAATTCAATT TCGCACGAGT GTATTTTATC 16393 .......... .......... .......... .......... .......... .......... 422 TTAGTTGTTG GCTTGATTTA TGGAAGTTGA AAATGAGATT TAAAATGCTC AACACAAGAT 16453 .......... .......... .......... .......... .......... .......... 422 TTTCTTTTCG TATTTACACA ACTTTGAGAA TGCTTCCAAT TATATCACCA CAACTGTAAC 16513 .......... .......... .......... .......... .......... .......... 422 AGTTTTATCA AGTCCTCTCC TTCCAGCCAT CTAAGTGTAG TCTCCGGGAG TAGCTGCCTA 16573 .......... .......... .......... .......... .......... .......... 422 AATTCCTTGT CGTCAAACTT ACATAAGAAT CAAAAGCAAC TTGCCTCCAA AATTTGATGC 16633 .......... .......... .......... .......... .......... .......... 422 AGTTTAAACC TTTTAGTGTT CAATGAGTTT GCTGTGCGCC CATTGGGTGA GGGAAGAGCT 16693 .......... .......... .......... .......... .......... .......... 422 TTAACTCGTG CAGGTTCCTA TTGCATCTCC GCGGGCTTCT GGACCTGTTA CTCGTCTACT 16753 .......... .......... .......... .......... .......... .......... 422 AATTTGGGAT CTTAAGATTG CAAGGGAAAA GTGTGAAAAT CTACTGGCTG AAAATGCATA 16813 .......... .......... .......... .......... .......... .......... 422 CTGATTTAAC TGCATCTAAA GAAGAAGTTG GTTGATTGAA GGATCAGTTA GTACAGAAGA 16873 .......... .......... .......... .......... .......... .......... 422 AGCTTGATAG CAACGCTAGA GTGGACTGGA TCCTCCAGTT ACTTGCTTCT TCATCCTGTC 16933 .......... .......... .......... .......... .......... .......... 422 CTCCAAACCC CAATCATTCC TCTTCTTGAT CCCTGCTTTC TGGTCTAGTT TCTTATACTT 16993 .......... .......... .......... .......... .......... .......... 422 TTGGACTGAA GACATTGTTA TGTTCTTTTG AGTTTTGTGC TTAGACTGAA TATTTTGTGA 17053 .......... .......... .......... .......... .......... .......... 422 GCTTAAAATG TTGGTGTATC TCGGATCCTC TGCTTCCTTC GTTCTTGCAT GTTTTTGCAT 17113 .......... .......... .......... .......... .......... .......... 422 ATGTTTACAG ATGGCTAATA TCATTAGATT GGAGGTATCT TGTTGTGTTC TACGCGATGT 17173 .......... .......... .......... .......... .......... .......... 422 TGCTCTTCCG GAGCTCTGCG TTTTCGTTGG CTTGGTTTAC TGTTTTAACG CTTTTCTCTT 17233 .......... .......... .......... .......... .......... .......... 422 CTTTTTGATA TGTATTGCTC TTGTGTACTG TGTGTATTGA CCTTATACAG GAAATAGGAG 17293 .......... .......... .......... .......... .......... .......... 422 TAGACGATTT GTCATCATCA AAAAAGAGGG AAAATGTGTT GGGTTTTATT TT-CCCTAAA 17352 |||| || ||||||| || |||||| .......... .......... .......... ......TGTT GGATTTTATT TTGTCCTAAA 446 TTTCTTATCA TAAATAGGTT TTCCTTTAAG G-GGAAGGTT TTG-ATTGAC TAA-TCATTT 17409 |||||||||| |||||||||| || |||| || | || ||| ||| |||||| ||| || ||| TTTCTTATCA TAAATAGGTT TTTCTTTTAG GAAAAAAGTT TTGAATTGAC TAATTCTTTT 506 TCTTGTAGGA AAAGGTTTAG GACTCTATAA ATAGAGAAAT GTTCCTTCTA ACTTAGTCAG 17469 ||| |||||| ||| ||| TCTGGTAGGA AAATGTT... .......... .......... .......... .......... 523 CATTCACAAT GTAGTCTTAA GAGCTTTGAG AGTTTTGGTT AGGGAGAGAA TTTATGGGTC 17529 .......... .......... .......... .......... .......... .......... 523 ACAAGTTGGA TACATTATCA CTTGTGTGAA CCTCCCATGT ATTCCGAGTG AATTGGTTGA 17589 ||| ||| |||| |||| |||||||||| .......... .......... .......... ...CCCGTGT ATTCTTAGTG AATTGGTTGA 550 GGTTGTTTCT CTCTGTATTT TGTACTCTCA TATTTATAGT GGATTGCTCA TCTCCTTTGT 17649 |||||||||| |||||||||| |||||||||| |||| ||||| |||||||||| ||||| |||| GGTTGTTTCT CTCTGTATTT TGTACTCTCA TATTAATAGT GGATTGCTCA TCTCCATTGT 610 GGACGTAGGT CGATTGACCG AACCACATTA AATCTTTGTG TGTTTTGGTA TATTTCTCGT 17709 |||||||||| |||||||||| |||||| ||| |||||||||| | |||||||| |||||||||| GGACGTAGGT CGATTGACCG AACCACGTTA AATCTTTGTG TCTTTTGGTA TATTTCTCGT 670 TGTC-TTCTT ACTCGTGGTC TTTTGAGGTT TGCTTTGCTA GC-TTCCGCG TTTACACCTG 17767 |||| ||| | |||||||||| |||||||||| |||||||||| || ||||||| ||||| |||| TGTCTTTCAT ACTCGTGGTC TTTTGAGGTT TGCTTTGCTA GCTTTCCGCG TTTAC-CCTG 729 CTGATTTTCG GTCCTAACAA 17787 || |||| || || ||||||| CTTATTTCCG GTTCTAACAA 749 hqPGS_C06HBa0054K13.1-16+_SGN-E543331+ (14234 14264,15640 15668,16001 16005,17330 17426,17563 17787) ******************************************************************************** EST sequence 14 +strand 617 n (File: SGN-E288383+) 1 TCAACTTGTG GGGGAATAAT TTTGACATCG ATTCAACATT GAGCTTCCTT GAATCATTGA 61 CAAACTGTAG GAATCTAAGA GTACTCACGC TTGGTGGTAA TCCGTTGGAT GGTGTTTTGC 121 CTGCATCTGT TGGGAATTTC TCAAACTGCT TGCAAATATG TGAAGCATCT AAATGTAAAC 181 TGAATGGTGT CATTTCAAAA CAAATTACTA ATCTTACTGG ATTGACAAGG ATGAGTCTGT 241 CGAACAATCA GTTGATAGGC CATATTCCAA CAACAGTGCA AGGAATGCTG AACCTTCAAG 301 AACTTTACCT ATGAAGCAAC AAGTTAGAAG GAGCCATACC AGATGTTATC TGCAGTTGAC 361 AGTATCTTGG TGCATTAGAA TTGTCAGAGA ATCAATTTTC TAGTTTCGTT CCACCATGCT 421 TAGGGAATGT TACTAGTTTG AGGACACTCT ATCTAGATAA CAACAAGCTG GATTCTAGAT 481 TACCTGCAAG ATTGGGGGGA CTTCAAAACA TCATAGAGTT CAATATTTCA TCCAATTATT 541 TGAGTGGAGA AATTCCGCTA GAGAGCGGAA ACTTGAATGG TGCAACACTG ATTGATCTGT 601 CAAATAATTA TTTTTCT Predicted gene structure (within gDNA segment 13352 to 15430): Exon 1 14204 14820 ( 617 n); cDNA 1 617 ( 617 n); score: 0.977 MATCH C06HBa0054K13.1-16+ SGN-E288383+ 0.977 617 1.000 C PGS_C06HBa0054K13.1-16+_SGN-E288383+ (14204 14820) Alignment (genomic DNA sequence = upper lines): TCAACTTGTG GGGGAATAAT TTTGTCAGCG ATTCAACATT GAGCTTCCTT GAATCATTGA 14263 |||||||||| |||||||||| |||| || || |||||||||| |||||||||| |||||||||| TCAACTTGTG GGGGAATAAT TTTGACATCG ATTCAACATT GAGCTTCCTT GAATCATTGA 60 CAAACTGTAG GAATCTAAGA GTACTCACGC TTGGTGGTAA TCCGTTGGAT GGTGTTTTGC 14323 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAACTGTAG GAATCTAAGA GTACTCACGC TTGGTGGTAA TCCGTTGGAT GGTGTTTTGC 120 CTGCATCTGT TGGTAATTTC TCAAACTCCT TGCAAATTTT TGAAGCATCT AAATGTAAAC 14383 |||||||||| ||| |||||| ||||||| || ||||||| | |||||||||| |||||||||| CTGCATCTGT TGGGAATTTC TCAAACTGCT TGCAAATATG TGAAGCATCT AAATGTAAAC 180 TGAAGGGTGT CATTTCAAAA CAAATTACTA ATCTTACTGG ATTGACAAGG ATGAGTCTGT 14443 |||| ||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAATGGTGT CATTTCAAAA CAAATTACTA ATCTTACTGG ATTGACAAGG ATGAGTCTGT 240 CGAACAATCA GTTGATAGGT CATATTCCAA AAACAGTGCA AGGAATGCTG AACCTTCAAG 14503 |||||||||| ||||||||| |||||||||| ||||||||| |||||||||| |||||||||| CGAACAATCA GTTGATAGGC CATATTCCAA CAACAGTGCA AGGAATGCTG AACCTTCAAG 300 AACTTTACCT AGGAAGCAAC AAGTTAGAAG GAGCCATACC AGATGTTATC TGCAGTTTAC 14563 |||||||||| | |||||||| |||||||||| |||||||||| |||||||||| ||||||| || AACTTTACCT ATGAAGCAAC AAGTTAGAAG GAGCCATACC AGATGTTATC TGCAGTTGAC 360 AGTATCTTGG TGCATTAGAA TTGTCAGAAA ATCAATTTTC TAGTTCCGTT CCACCATGCT 14623 |||||||||| |||||||||| |||||||| | |||||||||| ||||| |||| |||||||||| AGTATCTTGG TGCATTAGAA TTGTCAGAGA ATCAATTTTC TAGTTTCGTT CCACCATGCT 420 TAGGGAATGT TACTAGTTTG AGGACACTCT ATCTAGATAA CAACAAGCTG GATTCTAGAT 14683 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAGGGAATGT TACTAGTTTG AGGACACTCT ATCTAGATAA CAACAAGCTG GATTCTAGAT 480 TACCTGCAAG ATTGGGGGGA CTTCAAAACA TCATAGAGTT CAATATTTCA TCCAATTATT 14743 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TACCTGCAAG ATTGGGGGGA CTTCAAAACA TCATAGAGTT CAATATTTCA TCCAATTATT 540 TGAGTGGAGA AATTCCGCTA GAGAGCGGAA ACTTGAAGGG TGCAACACTG ATTGATCTGT 14803 |||||||||| |||||||||| |||||||||| ||||||| || |||||||||| |||||||||| TGAGTGGAGA AATTCCGCTA GAGAGCGGAA ACTTGAATGG TGCAACACTG ATTGATCTGT 600 CAAATAATTA TTTTTCT 14820 |||||||||| ||||||| CAAATAATTA TTTTTCT 617 hqPGS_C06HBa0054K13.1-16+_SGN-E288383+ (14204 14820) ******************************************************************************** EST sequence 12 +strand 673 n (File: SGN-E395576+) 1 TTTCATGGCT GAATTTCTCT CTTGTGCCCA CAACGCCATC AGAATGCAGA CAATAATGGC 61 GAAGATGAAG GTGGTGAGGA GTGAAATTGC TGCGAAACAA GTGGTTGTGA TCGAGGAAAA 121 TGAGGAGATA CATTGGTATG CTTCTTGAAT TTCGTCCGGA GGACACAGCT ACTCAAATCC 181 AAATGCAAAG GATCTTCAAG AGTAAAGGAA TAAAACAAGA CCTTGGTTCA TTGTGAAAGT 241 TATGTGTGAT CCATAGCTGA AAGTTTGGCA TTTATCTCGG TTTTCCCTTC CTATTTGATT 301 TTTTTTCAAT AATCGCCGTT AGGTCAATTC TGCTATTTAA GTCAAGTTTC AACCAGCTTT 361 TGGGAATTCT GGAAGTCACG TGCTCATCAA AGTAAATTTT ATATACACTG ATGCAACGGT 421 CTATCTCCAC AATGGGTGTT CAAATCCAGT GGTGCATTGT GACTTGAAGC CAAGTGTCTT 481 GCTTGATCAA GACATGGTTG GCCATGTCAG TGATTTTGGC ATTGCAAAAT TGTTAGGTGC 541 AGGGGAGAGT TTTGTTCAAA CAAGGACAAT AGCAACCATT GGATAATTGC TCCAGAGTAT 601 GGACAAGATG GAATCGTATC CACAAGCTGC GATGTTTATA GTTTCGGTAT CCTGATTGAT 661 GGAAACTTTT ACA Predicted gene structure (within gDNA segment 10089 to 17488): Exon 1 15647 15856 ( 210 n); cDNA 396 595 ( 200 n); score: 0.829 Intron 1 15857 15954 ( 98 n); Pd: 0.999 (s: 0.90), Pa: 0.805 (s: 0.90) Exon 2 15955 16031 ( 77 n); cDNA 596 673 ( 78 n); score: 0.864 MATCH C06HBa0054K13.1-16+ SGN-E395576+ 0.838 287 0.426 C PGS_C06HBa0054K13.1-16+_SGN-E395576+ (15647 15856,15955 16031) Alignment (genomic DNA sequence = upper lines): ATGTAATGAT AGATGTTGCA TCTGCAATGA ACTATCTCCA CAATGGCTAT TCAACGCCTG 15706 || | || || | | || | ||||| | ||||||||| |||||| | | |||| || | ATTTTAT-AT ACA--CTG-A --TGCAACGG TCTATCTCCA CAATGGGTGT TCAAATCCAG 449 TAGTGCATTG TGACTTGAAA CCAAGTAATG TCTTGTTAGA TGAAGAAATG GTTGCTCATG 15766 | |||||||| ||||||||| ||||| || ||||| | || | |||| ||| |||| |||| TGGTGCATTG TGACTTGAAG CCAAG---TG TCTTGCTTGA TCAAGACATG GTTGGCCATG 506 TAAGTGATTT TGGCATTGCA AAAATGTTAG GTGCAGGGGA GGCTTTTGTT CAAACAAGGA 15826 | |||||||| |||||||||| ||| |||||| |||||||||| | ||||||| |||||||||| TCAGTGATTT TGGCATTGCA AAATTGTTAG GTGCAGGGGA GAGTTTTGTT CAAACAAGGA 566 CAGTTGCAAC CATTGGATAT ATTGCTCCAG GTATATTTTA AGTTTTCTCG TATCGCCTTT 15886 || | ||||| ||||||||| |||||||||| CAATAGCAAC CATTGGATA- ATTGCTCCAG .......... .......... .......... 595 AAATACTCAA AACAATTCTT TCCCCTATGT ATAAATTGAT TTGTGGTCAT TTTCGACCAT 15946 .......... .......... .......... .......... .......... .......... 595 GAATACAGAG TATGGACAAG ATGGAATAGT ATCCACGAGT TGTGATGTTT ATAGTTTTGG 16006 || |||||||||| ||||||| || |||||| || || ||||||| ||||||| || ........AG TATGGACAAG ATGGAATCGT ATCCACAAGC TGCGATGTTT ATAGTTTCGG 647 TATCCTGA-T GATGGAGACG TTCACA 16031 |||||||| | |||||| || || ||| TATCCTGATT GATGGAAACT TTTACA 673 hqPGS_C06HBa0054K13.1-16+_SGN-E395576+ (15647 15856,15955 16031) ******************************************************************************** EST sequence 4 +strand 509 n (File: SGN-E314138+) 1 AATTCTGGAA GTCACGTGCT CATCAAAGTA AATTTTATAT ACACTGATGC AACGGTCTAT 61 CTCCACAATG GGTGTTCAAA TCCAGTGGTG CATTGTGACT TGAAGCCAAG TGTCTTGCTT 121 GATCAAGACA TGGTTGGCCA TGTCAGTGAT TTTGGCATTG CAAAATTGTT AGGTGCAGGG 181 GAGAGTTTTG TTCAAACAAG GACAATAGCA ACCATTGGAT AATTGCTCCA GAGTATGGAC 241 AAGATGGAAT CGTATCCACA AGCTGCGATG TTTATAGTTT CGGTATCCTG ATTGATGGAG 301 ACGTTTACAA GAATCAGACC AGGTGATGAA AGATTTACTG GAGAGTTGAG CATACGACGT 361 TGGGTTAGTG ATTCTTTTCC AGATGAGATT CATAAGGTGG TGGATGCTAA TTTGGTACAG 421 CCTANGGGAT GAACGAATTG ACGCAAAGAT GCAGTGTCTG TTGTCTATTA TAGAGTTAGC 481 TTTGAGCTGT ACTTTAGCAA CACCTGATG Predicted gene structure (within gDNA segment 13729 to 19488): Exon 1 15679 15856 ( 178 n); cDNA 58 231 ( 174 n); score: 0.871 Intron 1 15857 15954 ( 98 n); Pd: 0.999 (s: 0.90), Pa: 0.805 (s: 0.90) Exon 2 15955 16230 ( 276 n); cDNA 232 509 ( 278 n); score: 0.819 MATCH C06HBa0054K13.1-16+ SGN-E314138+ 0.839 454 0.892 C PGS_C06HBa0054K13.1-16+_SGN-E314138+ (15679 15856,15955 16230) Alignment (genomic DNA sequence = upper lines): TATCTCCACA ATGGCTATTC AACGCCTGTA GTGCATTGTG ACTTGAAACC AAGTAATGTC 15738 |||||||||| |||| | ||| || || || |||||||||| ||||||| || ||| |||| TATCTCCACA ATGGGTGTTC AAATCCAGTG GTGCATTGTG ACTTGAAGCC AAG---TGTC 114 TTGTTAGATG AAGAAATGGT TGCTCATGTA AGTGATTTTG GCATTGCAAA AATGTTAGGT 15798 ||| | ||| |||| ||||| || ||||| |||||||||| |||||||||| | |||||||| TTGCTTGATC AAGACATGGT TGGCCATGTC AGTGATTTTG GCATTGCAAA ATTGTTAGGT 174 GCAGGGGAGG CTTTTGTTCA AACAAGGACA GTTGCAACCA TTGGATATAT TGCTCCAGGT 15858 ||||||||| ||||||||| |||||||||| | ||||||| ||||||| || |||||||| GCAGGGGAGA GTTTTGTTCA AACAAGGACA ATAGCAACCA TTGGATA-AT TGCTCCAG.. 231 ATATTTTAAG TTTTCTCGTA TCGCCTTTAA ATACTCAAAA CAATTCTTTC CCCTATGTAT 15918 .......... .......... .......... .......... .......... .......... 231 AAATTGATTT GTGGTCATTT TCGACCATGA ATACAGAGTA TGGACAAGAT GGAATAGTAT 15978 |||| |||||||||| ||||| |||| .......... .......... .......... ......AGTA TGGACAAGAT GGAATCGTAT 255 CCACGAGTTG TGATGTTTAT AGTTTTGGTA TCCTGA-TGA TGGAGACGTT CACACGAACA 16037 |||| || || ||||||||| ||||| |||| |||||| ||| |||||||||| ||| ||| CCACAAGCTG CGATGTTTAT AGTTTCGGTA TCCTGATTGA TGGAGACGTT TACAAGAATC 315 AGACCAAGTG ATGACATATT TACTGGAGAC TTGAGCATAC AAAGCTGGAT TAGTGATTCC 16097 |||||| ||| |||| | ||| ||||||||| |||||||||| | | ||| | ||||||||| AGACCAGGTG ATGAAAGATT TACTGGAGAG TTGAGCATAC GACGTTGGGT TAGTGATTCT 375 TTTCCGGGTG AACTTCACAA GGTGGTGGAT TCTAATTTGG TACAGCC-CG GAGATGAACA 16156 ||||| | || | |||| || |||||||||| ||||||||| ||||||| | ||||||| TTTCCAGATG AGATTCATAA GGTGGTGGAT GCTAATTTGG TACAGCCTAN GGGATGAACG 435 AATCGCTGCA AAGATGCAAT GTTTGTCATC TGTCATGGAA TTAGCTTTGA AGTGCACTTT 16216 ||| | ||| |||||||| | || ||| || | | || || |||||||||| || ||||| AATTGACGCA AAGATGCAGT GTCTGTTGTC TATTATAGAG TTAGCTTTGA GCTGTACTTT 495 AGTGAGACCT GATG 16230 || | |||| |||| AGCAACACCT GATG 509 hqPGS_C06HBa0054K13.1-16+_SGN-E314138+ (15679 15856,15955 16230) ******************************************************************************** EST sequence 22 -strand 812 n (File: SGN-E541708-) 1 ATCCAGTGGT GCATTGTGAC TTGAAGCCAA GTGTCTTGCT TGATCAAGAC ATGGTTGGCC 61 ATGTCAGTGA TTTTGGCATT GCAAAATTGT TAGGTGCAGG GGAGAGTTTT GTTCAAACAA 121 GGACAATAGC AACCATTGGA TAATTGCTCC AGAGTATGGA CAAGATGGAA TCGTATCCAC 181 AAGCTGCGAT GTTTATAGTT TCGGTATCCT GATTGATGGA GACGTTTACA AGAATCAGAC 241 CAGGTGATGA AAGATTTACT GGAGAGTTGA GCATACGACG TTGGGTTAGT GATTCTTTTC 301 CAGATGAGAT TCATAAGGTG GTGGATGCTA ATTTGGTACA GCCTAGGGGA TGAACGAATT 361 GACGCAAAGA TGCAGTGTCT GTTGTCTATT ATAGAGTTAG CTTTGAGCTG TACTTTAGCA 421 ACACCTGATG CAAGAATTAG TATGGAAGAT TCTCTTTCAA CACTTCAAAA TATCAGGCTC 481 CAGTTTGTCA ATAGTCGCCA CCGAAAAAAG CAACTGAAGG ATTTAGTACC GAAAAAAGCA 541 ACTTGCTTGG TAATGGCAAG GTCTACAATG TACAATTGGA GGGTGCATTC AAAAGTTTTG 601 ATACAGAAGA ATGTGAAATC TGACCAAAGT CATCAAAGCC TTAATGTTAG AATACATGTC 661 TAGTGGGACA CTTGATAAAT GGCTGTACTC TCACAAGTTG TTCTTGGATT TACTTCATAT 721 TATGTACTCT TTCACTTTCA GTGCCAGCTG GAATGGTGAT TTTCTAGCTA CTGGAGTTCA 781 CAATTCTAAT CCATAAAAAA AAAAAAAAAA AA Predicted gene structure (within gDNA segment 14509 to 23298): Exon 1 15703 15856 ( 154 n); cDNA 3 152 ( 150 n); score: 0.877 Intron 1 15857 15954 ( 98 n); Pd: 0.999 (s: 0.90), Pa: 0.805 (s: 0.90) Exon 2 15955 16304 ( 350 n); cDNA 153 504 ( 352 n); score: 0.811 Intron 2 16305 16803 ( 499 n); Pd: 0.694 (s: 0.74), Pa: 0.000 (s: 0.57) Exon 3 16804 16850 ( 47 n); cDNA 505 552 ( 48 n); score: 0.574 Intron 3 16851 17123 ( 273 n); Pd: 0.000 (s: 0.57), Pa: 0.778 (s: 0) Exon 4 17124 17130 ( 7 n); cDNA 553 559 ( 7 n); score: 0.857 Intron 4 17131 17283 ( 153 n); Pd: 0.900 (s: 0), Pa: 1.000 (s: 0) Exon 5 17284 17301 ( 18 n); cDNA 560 576 ( 17 n); score: 0.500 Intron 5 17302 17628 ( 327 n); Pd: 0.000 (s: 0), Pa: 0.915 (s: 0) Exon 6 17629 17638 ( 10 n); cDNA 577 586 ( 10 n); score: 0.600 Intron 6 17639 18159 ( 521 n); Pd: 0.900 (s: 0), Pa: 0.000 (s: 0) Exon 7 18160 18194 ( 35 n); cDNA 587 619 ( 33 n); score: 0.686 Intron 7 18195 19533 (1339 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.66) Exon 8 19534 19632 ( 99 n); cDNA 620 717 ( 98 n); score: 0.737 PPA cDNA 793 812 MATCH C06HBa0054K13.1-16+ SGN-E541708- 0.816 720 0.887 C PGS_C06HBa0054K13.1-16+_SGN-E541708- (15703 15856,15955 16304,16804 16850,17124 17130,17284 17301,17629 17638,18160 18194,19534 19632) Alignment (genomic DNA sequence = upper lines): CCTGTAGTGC ATTGTGACTT GAAACCAAGT AATGTCTTGT TAGATGAAGA AATGGTTGCT 15762 || || |||| |||||||||| ||| ||||| ||||||| | ||| |||| ||||||| CCAGTGGTGC ATTGTGACTT GAAGCCAAG- --TGTCTTGC TTGATCAAGA CATGGTTGGC 59 CATGTAAGTG ATTTTGGCAT TGCAAAAATG TTAGGTGCAG GGGAGGCTTT TGTTCAAACA 15822 ||||| |||| |||||||||| ||||||| || |||||||||| ||||| ||| |||||||||| CATGTCAGTG ATTTTGGCAT TGCAAAATTG TTAGGTGCAG GGGAGAGTTT TGTTCAAACA 119 AGGACAGTTG CAACCATTGG ATATATTGCT CCAGGTATAT TTTAAGTTTT CTCGTATCGC 15882 |||||| | | |||||||||| ||| |||||| |||| AGGACAATAG CAACCATTGG ATA-ATTGCT CCAG...... .......... .......... 152 CTTTAAATAC TCAAAACAAT TCTTTCCCCT ATGTATAAAT TGATTTGTGG TCATTTTCGA 15942 .......... .......... .......... .......... .......... .......... 152 CCATGAATAC AGAGTATGGA CAAGATGGAA TAGTATCCAC GAGTTGTGAT GTTTATAGTT 16002 |||||||| |||||||||| | |||||||| || || ||| |||||||||| .......... ..AGTATGGA CAAGATGGAA TCGTATCCAC AAGCTGCGAT GTTTATAGTT 200 TTGGTATCCT GA-TGATGGA GACGTTCACA CGAACAAGAC CAAGTGATGA CATATTTACT 16061 | |||||||| || ||||||| |||||| ||| ||| |||| || ||||||| | ||||||| TCGGTATCCT GATTGATGGA GACGTTTACA AGAATCAGAC CAGGTGATGA AAGATTTACT 260 GGAGACTTGA GCATACAAAG CTGGATTAGT GATTCCTTTC CGGGTGAACT TCACAAGGTG 16121 ||||| |||| |||||| | | ||| ||||| ||||| |||| | | ||| | ||| |||||| GGAGAGTTGA GCATACGACG TTGGGTTAGT GATTCTTTTC CAGATGAGAT TCATAAGGTG 320 GTGGATTCTA ATTTGGTACA GCC-CGGAGA TGAACAAATC GCTGCAAAGA TGCAATGTTT 16180 |||||| ||| |||||||||| ||| || || ||||| ||| | ||||||| |||| ||| | GTGGATGCTA ATTTGGTACA GCCTAGGGGA TGAACGAATT GACGCAAAGA TGCAGTGTCT 380 GTCATCTGTC ATGGAATTAG CTTTGAAGTG CACTTTAGTG AGACCTGATG CAAGAATTAG 16240 || ||| | || || |||| |||||| || ||||||| | |||||||| |||||||||| GTTGTCTATT ATAGAGTTAG CTTTGAGCTG TACTTTAGCA ACACCTGATG CAAGAATTAG 440 CATGAAGGAT GCTCTTTCAA CACTCAAAAA GATGAGGCTA CAGCTTGTTA GTAGTCGGCA 16300 ||| | ||| ||||||||| |||| |||| || ||||| ||| |||| | |||||| || TATGGAAGAT TCTCTTTCAA CACTTCAAAA TATCAGGCTC CAGTTTGTCA ATAGTCGCCA 500 TTAGGTGGAA TCATTACCAA CCTTCTCTTG TATGTTATTT AGTTACCAGT TTTCTCTCTT 16360 CCGA...... .......... .......... .......... .......... .......... 504 ATGTAATTCA ATTTCGCACG AGTGTATTTT ATCTTAGTTG TTGGCTTGAT TTATGGAAGT 16420 .......... .......... .......... .......... .......... .......... 504 TGAAAATGAG ATTTAAAATG CTCAACACAA GATTTTCTTT TCGTATTTAC ACAACTTTGA 16480 .......... .......... .......... .......... .......... .......... 504 GAATGCTTCC AATTATATCA CCACAACTGT AACAGTTTTA TCAAGTCCTC TCCTTCCAGC 16540 .......... .......... .......... .......... .......... .......... 504 CATCTAAGTG TAGTCTCCGG GAGTAGCTGC CTAAATTCCT TGTCGTCAAA CTTACATAAG 16600 .......... .......... .......... .......... .......... .......... 504 AATCAAAAGC AACTTGCCTC CAAAATTTGA TGCAGTTTAA ACCTTTTAGT GTTCAATGAG 16660 .......... .......... .......... .......... .......... .......... 504 TTTGCTGTGC GCCCATTGGG TGAGGGAAGA GCTTTAACTC GTGCAGGTTC CTATTGCATC 16720 .......... .......... .......... .......... .......... .......... 504 TCCGCGGGCT TCTGGACCTG TTACTCGTCT ACTAATTTGG GATCTTAAGA TTGCAAGGGA 16780 .......... .......... .......... .......... .......... .......... 504 AAAGTGTGAA AATCTACTGG CTGAAAATGC ATACTGATTT AACT-GCATC TAAAGAAG-A 16838 |||| || | ||||| | | | | | ||| ||| | .......... .......... ...AAAAAGC A-ACTGAAGG ATTTAGTACC GAAAAAAGCA 540 AGTTGGTTGA TTGAAGGATC AGTTAGTACA GAAGAAGCTT GATAGCAACG CTAGAGTGGA 16898 | ||| ||| | ACTTGCTTGG TA........ .......... .......... .......... .......... 552 CTGGATCCTC CAGTTACTTG CTTCTTCATC CTGTCCTCCA AACCCCAATC ATTCCTCTTC 16958 .......... .......... .......... .......... .......... .......... 552 TTGATCCCTG CTTTCTGGTC TAGTTTCTTA TACTTTTGGA CTGAAGACAT TGTTATGTTC 17018 .......... .......... .......... .......... .......... .......... 552 TTTTGAGTTT TGTGCTTAGA CTGAATATTT TGTGAGCTTA AAATGTTGGT GTATCTCGGA 17078 .......... .......... .......... .......... .......... .......... 552 TCCTCTGCTT CCTTCGTTCT TGCATGTTTT TGCATATGTT TACAGATGGC TAATATCATT 17138 ||||| | .......... .......... .......... .......... .....ATGGC AA........ 559 AGATTGGAGG TATCTTGTTG TGTTCTACGC GATGTTGCTC TTCCGGAGCT CTGCGTTTTC 17198 .......... .......... .......... .......... .......... .......... 559 GTTGGCTTGG TTTACTGTTT TAACGCTTTT CTCTTCTTTT TGATATGTAT TGCTCTTGTG 17258 .......... .......... .......... .......... .......... .......... 559 TACTGTGTGT ATTGACCTTA TACAGGAAAT AGGAGTAGAC GATTTGTCAT CATCAAAAAA 17318 | | | | | || || .......... .......... .....GGTCT A-CAATGTAC AAT....... .......... 576 GAGGGAAAAT GTGTTGGGTT TTATTTTCCC TAAATTTCTT ATCATAAATA GGTTTTCCTT 17378 .......... .......... .......... .......... .......... .......... 576 TAAGGGGAAG GTTTTGATTG ACTAATCATT TTCTTGTAGG AAAAGGTTTA GGACTCTATA 17438 .......... .......... .......... .......... .......... .......... 576 AATAGAGAAA TGTTCCTTCT AACTTAGTCA GCATTCACAA TGTAGTCTTA AGAGCTTTGA 17498 .......... .......... .......... .......... .......... .......... 576 GAGTTTTGGT TAGGGAGAGA ATTTATGGGT CACAAGTTGG ATACATTATC ACTTGTGTGA 17558 .......... .......... .......... .......... .......... .......... 576 ACCTCCCATG TATTCCGAGT GAATTGGTTG AGGTTGTTTC TCTCTGTATT TTGTACTCTC 17618 .......... .......... .......... .......... .......... .......... 576 ATATTTATAG TGGATTGCTC ATCTCCTTTG TGGACGTAGG TCGATTGACC GAACCACATT 17678 |||| | | .......... TGGAGGGTGC .......... .......... .......... .......... 586 AAATCTTTGT GTGTTTTGGT ATATTTCTCG TTGTCTTCTT ACTCGTGGTC TTTTGAGGTT 17738 .......... .......... .......... .......... .......... .......... 586 TGCTTTGCTA GCTTCCGCGT TTACACCTGC TGATTTTCGG TCCTAACAAA ATGATGGTTT 17798 .......... .......... .......... .......... .......... .......... 586 ACGAAGTTGA CGATAGACAT GCAATCAGAT TTCAAAAAGA GCTGGGAGAA AAGATTTCAA 17858 .......... .......... .......... .......... .......... .......... 586 AAACGAGAGA AAGAAAAGAG AGCTAACACA CAAAGGCCAA TCAATTTGAG AGATCATAGA 17918 .......... .......... .......... .......... .......... .......... 586 AATATAAGTT AAGAAGTTCT ATAGTTAGAA TTTCTTTTGT CATGAGTAGA GTGTTTTGAT 17978 .......... .......... .......... .......... .......... .......... 586 TCGTACTTAG AGTCATTATC GTAGGAGGAG TGGATTTGGC TTCTTGTAGA GTTGAGTCTT 18038 .......... .......... .......... .......... .......... .......... 586 TGAGAGGTTT GTGACAAGGA GTGGATTTGA CTTCTTGGAG AGTAGAGATA GTCGATTATA 18098 .......... .......... .......... .......... .......... .......... 586 GTTAATCGAA AGTTTTTCTG TGAGTTCATT GATGAGTTAA TAACTTTGAT AGCCACTCAA 18158 .......... .......... .......... .......... .......... .......... 586 CTATCAATTG TTTTCACAGA TATAGACATC TGAAATGCTC TGTTGTTTGT GACTTTATAA 18218 |||| | |||| | | | | ||| || |||||| .ATTCAAAAG TTTTGATACA GA-AGA-ATG TGAAAT.... .......... .......... 619 ACTTGTTGAT TTTAGTATAT ATCCTCAAAA TGTAAGTTGT ACTCCTACAT TCCAAGTCTG 18278 .......... .......... .......... .......... .......... .......... 619 CATAATATGG CCATTTTCAA TGCATGACTG TGCTACATGT GTGTGACTTT GTTTATCAAT 18338 .......... .......... .......... .......... .......... .......... 619 TCTCTGCTGG AACGCATATG ACAACAATCT ATGTTCCGAG ATTATCAACA ACTTGAATAT 18398 .......... .......... .......... .......... .......... .......... 619 CCCTGCTAAC CAGACTGCAA CTAGTTGTTG CCTGCAATCA CATATCTGCA TATTGTTGCA 18458 .......... .......... .......... .......... .......... .......... 619 CAGGACTGTG ATTGTCTTTA TTGGTTGCTA AATGTACGTT CCCTCATTCA CTTAGCTGCA 18518 .......... .......... .......... .......... .......... .......... 619 TAGAGTGCTG ACTATTAGAG TTTAGGGCCT GATGACATGA TTATCTCCAA CCTAAAATTC 18578 .......... .......... .......... .......... .......... .......... 619 GTAAACACAA ACCAAGCTAA CCAAAACTAG TTTAGTTCAT AATGACAAGG AATTGTACAG 18638 .......... .......... .......... .......... .......... .......... 619 AAATAAAGGA GGAATTTTAA TCTTTCTGAA ATGATCATAA TGCACAACTA CCTGAACTTT 18698 .......... .......... .......... .......... .......... .......... 619 CTGTTCCTAA TAAACAACAA CTTAAATAAT ATTTAAGCTG AAAGACAAGA AAAACGGAAA 18758 .......... .......... .......... .......... .......... .......... 619 GTCCAGAAGT TGTATTTAAC ATAGAGGAAA TCAAGGAGGA ACATTATTCC TTGTCAACTT 18818 .......... .......... .......... .......... .......... .......... 619 TTTCCTTCTG AAACTTCGCA TTCCCAACCT CTCCAAATTA CAACTTCCTC TCGCTGTTTT 18878 .......... .......... .......... .......... .......... .......... 619 TAGTAATTGA GTGGGAGTGT TAAAATGTTG AATAATATCA TGCTTGTGAC TATATTTTGT 18938 .......... .......... .......... .......... .......... .......... 619 CCATAAATAT AGGTAAAAAA AGTTTTCTTC CTATTATTTC TTTTTACTTA GGATCTTTTC 18998 .......... .......... .......... .......... .......... .......... 619 TTTTTCCTTT TATATAATAT TTTTTTTTAT CTAATTAGAA GAATAATTAA CTGAATAGAA 19058 .......... .......... .......... .......... .......... .......... 619 GTATGGAAAC TATAGATAAC CTACCGTATG TACTGGTATC ACCCCATTCT TAATCTTATT 19118 .......... .......... .......... .......... .......... .......... 619 ATGAAATTAA AATTAGTTTG TCAAAATGGT TTGATTATCT CTTGGTAATT TATTAATCAC 19178 .......... .......... .......... .......... .......... .......... 619 GGACCAATAT ATACCTTTAA CAAAAGATTA CAATAAAAAA TATTATATAA AAGAAAAATA 19238 .......... .......... .......... .......... .......... .......... 619 AAAAAAAGAT CCTAAGTAAA AAAAATAATA GGAAGAAAAC TTTTTTACAT AAATAATATG 19298 .......... .......... .......... .......... .......... .......... 619 GACAAAATAA TATGTTGCTA AAATTGTGAG ATTATAATAA TTTTGATACT TGATATATAA 19358 .......... .......... .......... .......... .......... .......... 619 TATATTTATT AACTAAATCA TGCTTAGAGG TTTAGTTTGA AAAATTAAAT CTTAATCATT 19418 .......... .......... .......... .......... .......... .......... 619 TATTTTAACC TATGACATGT GTCATTAATC CAAATAGAAA CTTGGGGAAA ATGGAGAGAA 19478 .......... .......... .......... .......... .......... .......... 619 GCCGAATCCC TCCGGAACTT CGCCACAAAA ATCTGACCAA AGTCATAACA AGCTGCTGCA 19538 ||| | .......... .......... .......... .......... .......... .....CTG-A 623 ACCTTGATTT CAAGGTCCTG GTGTTGGAAT ACATGCCCAA TGGGACACTT GATAAATGGT 19598 | | | ||| | | | |||| |||| ||||| | | |||||||||| ||||||||| CCAAAGTCAT CAAAGCCTTA ATGTTAGAAT ACATGTCTAG TGGGACACTT GATAAATGGC 683 TATATTCTCA CAACTTGTTC TTAAACTTAT TGCA 19632 | || ||||| ||| |||||| || | ||| | || TGTACTCTCA CAAGTTGTTC TTGGATTTAC TTCA 717 hqPGS_C06HBa0054K13.1-16+_SGN-E541708- (15703 15856,15955 16304,16804 16850,17124 17130,17284 17301,17629 17638,18160 18194,19534 19632) ******************************************************************************** EST sequence 20 +strand 595 n (File: SGN-E271645+) 1 GATTAGTCAA TCCAAAATTT TTCCCTAAAA GGAAAACCTA TTTATGTTAA GAAATTATGG 61 TAAATAAAAT CCAACAAATC TCCTCCCCCT TGGCCTGTAT TTCTGACCAA AATAAATTTC 121 TCCACATTCT TCATTTAATC TTCAACAACT TGCTTCTCTT CTTCTTAATC TCCTTTGTAA 181 AATTTATGTC TCAACCATAG AAAACCTCTC TGAAACAATT TCTCCAACAA AATCTTCATT 241 ACTGTCAAAA AGATTGCGGC TAGAACCTAC CACCTGTCAA GATGAACCAC CACCCTCTTT 301 CTAACCTGGT CCAATAATCG ATTATCGAAC CACTGAACCT GACCTCTGTC ATTAAATGGC 361 TCTAATACCC ACTTGTTAGG ATCGAAATAA GCAGGTGTAA ATGCGGAAGC TAGCAAAGCA 421 AACTTCGAAA GACCACGAGT AAGAAGACAA CGAGAAATAT ACCAAAAGAC ACCAAAGATT 481 TAACGTGGTT CGGTCAATCG ACCTACGTTC ACAAAGGAGA TGAGCAATCC ACTATAAATA 541 TGAGAGTACA ATATACAGAG AGAAACAACA TCAACCAATT CATTCGGAAT ATATG Predicted gene structure (within gDNA segment 22601 to 16721): Exon 1 17995 17985 ( 11 n); cDNA 355 365 ( 11 n); score: 0.909 Intron 1 17984 17795 ( 190 n); Pd: 0.908 (s: 0), Pa: 0.000 (s: 0.82) Exon 2 17794 17565 ( 230 n); cDNA 366 595 ( 230 n); score: 0.911 MATCH C06HBa0054K13.1-16- SGN-E271645+ 0.911 241 0.405 C PGS_C06HBa0054K13.1-16-_SGN-E271645+ (17995 17985,17794 17565) Alignment (genomic DNA sequence = upper lines): AATGACTCTA AGTACGAATC AAAACACTCT ACTCATGACA AAAGAAATTC TAACTATAGA 17936 |||| ||||| | AATGGCTCTA A......... .......... .......... .......... .......... 365 ACTTCTTAAC TTATATTTCT ATGATCTCTC AAATTGATTG GCCTTTGTGT GTTAGCTCTC 17876 .......... .......... .......... .......... .......... .......... 365 TTTTCTTTCT CTCGTTTTTG AAATCTTTTC TCCCAGCTCT TTTTGAAATC TGATTGCATG 17816 .......... .......... .......... .......... .......... .......... 365 TCTATCGTCA ACTTCGTAAA CCATCATTTT GTTAGGACCG AAAATCAGCA GGTGTAAACG 17756 | | || ||||||| || |||| |||| |||||||| | .......... .......... .TACCCACTT GTTAGGATCG -AAATAAGCA GGTGTAAATG 403 CGGAAGCTAG CAAAGCAAAC CTCAAAAGAC CACGAGTAAG AAGACAACGA GAAATATACC 17696 |||||||||| |||||||||| || |||||| |||||||||| |||||||||| |||||||||| CGGAAGCTAG CAAAGCAAAC TTCGAAAGAC CACGAGTAAG AAGACAACGA GAAATATACC 463 AAAACACA-C AAAGATTTAA TGTGGTTCGG TCAATCGACC TACGTCCACA AAGGAGATGA 17637 |||| ||| | |||||||||| ||||||||| |||||||||| ||||| |||| |||||||||| AAAAGACACC AAAGATTTAA CGTGGTTCGG TCAATCGACC TACGTTCACA AAGGAGATGA 523 GCAATCCACT ATAAATATGA GAGTACAAAA TACAGAGAGA AACAACCTCA ACCAATTCAC 17577 |||||||||| |||||||||| |||||||| | |||||||||| |||||| ||| ||||||||| GCAATCCACT ATAAATATGA GAGTACAATA TACAGAGAGA AACAACATCA ACCAATTCAT 583 TCGGAATACA TG 17565 |||||||| | || TCGGAATATA TG 595 hqPGS_C06HBa0054K13.1-16-_SGN-E271645+ (17995 17985,17794 17565) ******************************************************************************** EST sequence 16 -strand 785 n (File: SGN-E544264-) 1 CTTGATTCAG AAGTTAGCCC CACCAGCGGC AAAATTGACG ATAATCGAGT CACTGGGAAA 61 ACAAAAACGC ATAACAAACA TTCCCAATGT ACCCAAGCCT CAATGCAACA CTTCTAAACT 121 TCGCCATCCA AACTTTTTCG GCGGGATTAT GCATATGAAG ATTACCATAG CTGATGTAGA 181 TGTAGTTGGC TAAAGACCAA ATAAGAAGAA CGGTAAACAT CGCAGCGAAA ATAAGTTCAA 241 CCGCGTTTAC AATTCCAAGA GATTCAATTA CAAGCCGTGG CCGTCTAAAA TATTCCCGCA 301 CTTTATTACT ACTCCTAACA ATATAATTGT ATGTTAGTTA AAAGAGATAT ATCAAAGATA 361 GATCATTAAT AATTAGTATG TAATGTTAGG ATCGAAAATA AGCAGGTGTA AACGCGGAAG 421 CTAGCAAAGC AAACCTCAAA AGACTACGAG TAAGAAGACA ACGAGAAATA TACCCAAAGA 481 CACAAAGATT TAACGTGGTT GCAAATAAAA CTCAACATGT AATTGATTAA CCTGTGATTA 541 GAAGTTGACT TGTTGTAAAG ATGAAGATAA ACACAGCTCA CAGCAGCTAT CAACATTATG 601 GGAAATGTAA ATAAAAGAAG ATTTATCCCT TGTTCCCTGA AATATGTAGA GTTGAGTTTG 661 ATTAGTAGAT GTGGAGTCCA TGAATTTTTG TAAGTAGGTG TAGGTAACAT TACCCATATG 721 AAAAGCCATC CAACAAACAC CAAAACCACA AAACCATTCA AAATTGTCTT GCTCCCCATA 781 TTTTT Predicted gene structure (within gDNA segment 22379 to 12786): Exon 1 20786 20741 ( 46 n); cDNA 308 351 ( 44 n); score: 0.717 Intron 1 20740 20380 ( 361 n); Pd: 0.000 (s: 0.72), Pa: 0.000 (s: 0) Exon 2 20379 20354 ( 26 n); cDNA 352 376 ( 25 n); score: 0.692 Intron 2 20353 18444 (1910 n); Pd: 0.312 (s: 0), Pa: 0.908 (s: 0) Exon 3 18443 18430 ( 14 n); cDNA 377 389 ( 13 n); score: 0.643 Intron 3 18429 17781 ( 649 n); Pd: 0.123 (s: 0), Pa: 0.978 (s: 0.96) Exon 4 17780 17670 ( 111 n); cDNA 390 500 ( 111 n); score: 0.946 Intron 4 17669 17347 ( 323 n); Pd: 0.000 (s: 0.94), Pa: 0.000 (s: 0) Exon 5 17346 17327 ( 20 n); cDNA 501 520 ( 20 n); score: 0.800 Intron 5 17326 15196 (2131 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0) Exon 6 15195 15183 ( 13 n); cDNA 521 533 ( 13 n); score: 0.769 Intron 6 15182 14687 ( 496 n); Pd: 0.978 (s: 0), Pa: 0.938 (s: 0) Exon 7 14686 14677 ( 10 n); cDNA 534 542 ( 9 n); score: 0.800 Intron 7 14676 13975 ( 702 n); Pd: 0.000 (s: 0), Pa: 0.976 (s: 0) Exon 8 13974 13938 ( 37 n); cDNA 543 575 ( 33 n); score: 0.676 MATCH C06HBa0054K13.1-16- SGN-E544264- 0.946 277 0.353 C PGS_C06HBa0054K13.1-16-_SGN-E544264- (20786 20741,20379 20354,18443 18430,17780 17670,17346 17327,15195 15183,14686 14677,13974 13938) Alignment (genomic DNA sequence = upper lines): ACTAGTTCAA ATAAGACAAT TTTGTGTTGG TTATAAATAG TTTATATTAC AAAAATTCGT 20727 |||| | | | | || | ||| | | |||| | ||| ||| || |||| ACTACTCCTA ACAATATAAT TGTATGTTAG TTA-AAAGAG -ATATA.... .......... 351 TTCAAGTGTT CAAATTTTAG AAGAAAGAAA TTCACTAATC TCACCACATT GATTACTAAT 20667 .......... .......... .......... .......... .......... .......... 351 ATTAGAGAAT GAATATATAT AATCTAAATT CTCCCCTTCC AAGTATATGA GATATTTACC 20607 .......... .......... .......... .......... .......... .......... 351 CGCGGCTGAG ATGAGACCAC GACTAATAAG GTGGAGAAGA AGATATCAGG CACAAAACTG 20547 .......... .......... .......... .......... .......... .......... 351 AATAAATTAA TTTATATGGT GATAATATGT ATCTTTAATC CTAACATTTA ACGTAATATT 20487 .......... .......... .......... .......... .......... .......... 351 AATTTATTTA GCTTTGTCAC AGTGAAATTA TTTTTTCATG TGGAGAGCTA CATGACAAAA 20427 .......... .......... .......... .......... .......... .......... 351 ATTTTAAATA GATAAGAGAG TGTATTAACC ACAACATTAT AAATTAGTCA AGGTGTGTTT 20367 ||| | | | | .......... .......... .......... .......... .......TCA AAG-ATAGAT 363 CACTAATCAT TAGGTGATTG TTTAGGTCGA AAACTCATAC TTTCAATAGT TCAAATATAA 20307 || |||| || ||| CATTAATAAT TAG....... .......... .......... .......... .......... 376 AACTTAAAAA CTGATAAAGT TAAGATGTAA ATAATTCTGA GGGAAAATGC ACAGGTACCC 20247 .......... .......... .......... .......... .......... .......... 376 CCTCAACCTA TGTCCGAAAT TTCAGAGACA CACTTATACA ACACTAAGGT CCTATTACCC 20187 .......... .......... .......... .......... .......... .......... 376 CCTCAACTTA TTTTATAAGT AATTTTCTAT CCCTTTTCGA CCTATCGGAC ATAGGTTGAG 20127 .......... .......... .......... .......... .......... .......... 376 GGGTACTTGT GCATTTTTTC CCTGAACTTA TTTTATGATT GTTTCTCCTG TAAATATTTC 20067 .......... .......... .......... .......... .......... .......... 376 ATCACTTGGT TTCCTTCTTG TGAACCTCTC CATCATTAGG ATGCCAAAAC TATAAACATC 20007 .......... .......... .......... .......... .......... .......... 376 ACAACTCGTG GATACTATTC CATCTTGTCC ATACACTGTA ATCTTGGTAA AAAATGATCA 19947 .......... .......... .......... .......... .......... .......... 376 TGAAAGCTTC CTAGTTAAAA TGAAATATGC CAAAACTGAG AGTGTCAATC CATTTATAGG 19887 .......... .......... .......... .......... .......... .......... 376 GGAAAGAATT GCTTAACTAT AGAAGTTTCT AATATACTGG AGCAATATAT CCGATGGTTG 19827 .......... .......... .......... .......... .......... .......... 376 CAGTTGTTCT TGTTTGAACG AAAGCCTCCC CTACATCTAA CAATTTTGCA ATGCCAAAAT 19767 .......... .......... .......... .......... .......... .......... 376 CACTAACTTG ACCAACCATT TCTTGATCTA GCAACATATT GCTTGGCTTC AAGTCACAAT 19707 .......... .......... .......... .......... .......... .......... 376 GCACCACAGG CGTTGAATAG CCATTGTGGA GATAGTCCAT TGCAGATGCA ACATCTATCA 19647 .......... .......... .......... .......... .......... .......... 376 TTATATCCAA TCTCTGCAAT AAGTTTAAGA ACAAGTTGTG AGAATATAAC CATTTATCAA 19587 .......... .......... .......... .......... .......... .......... 376 GTGTCCCATT GGGCATGTAT TCCAACACCA GGACCTTGAA ATCAAGGTTG CAGCAGCTTG 19527 .......... .......... .......... .......... .......... .......... 376 TTATGACTTT GGTCAGATTT TTGTGGCGAA GTTCCGGAGG GATTCGGCTT CTCTCCATTT 19467 .......... .......... .......... .......... .......... .......... 376 TCCCCAAGTT TCTATTTGGA TTAATGACAC ATGTCATAGG TTAAAATAAA TGATTAAGAT 19407 .......... .......... .......... .......... .......... .......... 376 TTAATTTTTC AAACTAAACC TCTAAGCATG ATTTAGTTAA TAAATATATT ATATATCAAG 19347 .......... .......... .......... .......... .......... .......... 376 TATCAAAATT ATTATAATCT CACAATTTTA GCAACATATT ATTTTGTCCA TATTATTTAT 19287 .......... .......... .......... .......... .......... .......... 376 GTAAAAAAGT TTTCTTCCTA TTATTTTTTT TACTTAGGAT CTTTTTTTTA TTTTTCTTTT 19227 .......... .......... .......... .......... .......... .......... 376 ATATAATATT TTTTATTGTA ATCTTTTGTT AAAGGTATAT ATTGGTCCGT GATTAATAAA 19167 .......... .......... .......... .......... .......... .......... 376 TTACCAAGAG ATAATCAAAC CATTTTGACA AACTAATTTT AATTTCATAA TAAGATTAAG 19107 .......... .......... .......... .......... .......... .......... 376 AATGGGGTGA TACCAGTACA TACGGTAGGT TATCTATAGT TTCCATACTT CTATTCAGTT 19047 .......... .......... .......... .......... .......... .......... 376 AATTATTCTT CTAATTAGAT AAAAAAAAAT ATTATATAAA AGGAAAAAGA AAAGATCCTA 18987 .......... .......... .......... .......... .......... .......... 376 AGTAAAAAGA AATAATAGGA AGAAAACTTT TTTTACCTAT ATTTATGGAC AAAATATAGT 18927 .......... .......... .......... .......... .......... .......... 376 CACAAGCATG ATATTATTCA ACATTTTAAC ACTCCCACTC AATTACTAAA AACAGCGAGA 18867 .......... .......... .......... .......... .......... .......... 376 GGAAGTTGTA ATTTGGAGAG GTTGGGAATG CGAAGTTTCA GAAGGAAAAA GTTGACAAGG 18807 .......... .......... .......... .......... .......... .......... 376 AATAATGTTC CTCCTTGATT TCCTCTATGT TAAATACAAC TTCTGGACTT TCCGTTTTTC 18747 .......... .......... .......... .......... .......... .......... 376 TTGTCTTTCA GCTTAAATAT TATTTAAGTT GTTGTTTATT AGGAACAGAA AGTTCAGGTA 18687 .......... .......... .......... .......... .......... .......... 376 GTTGTGCATT ATGATCATTT CAGAAAGATT AAAATTCCTC CTTTATTTCT GTACAATTCC 18627 .......... .......... .......... .......... .......... .......... 376 TTGTCATTAT GAACTAAACT AGTTTTGGTT AGCTTGGTTT GTGTTTACGA ATTTTAGGTT 18567 .......... .......... .......... .......... .......... .......... 376 GGAGATAATC ATGTCATCAG GCCCTAAACT CTAATAGTCA GCACTCTATG CAGCTAAGTG 18507 .......... .......... .......... .......... .......... .......... 376 AATGAGGGAA CGTACATTTA GCAACCAATA AAGACAATCA CAGTCCTGTG CAACAATATG 18447 .......... .......... .......... .......... .......... .......... 376 CAGATATGTG ATTGCAGGCA ACAACTAGTT GCAGTCTGGT TAGCAGGGAT ATTCAAGTTG 18387 ||||| || || ...-TATGTA ATGTTAG... .......... .......... .......... .......... 389 TTGATAATCT CGGAACATAG ATTGTTGTCA TATGCGTTCC AGCAGAGAAT TGATAAACAA 18327 .......... .......... .......... .......... .......... .......... 389 AGTCACACAC ATGTAGCACA GTCATGCATT GAAAATGGCC ATATTATGCA GACTTGGAAT 18267 .......... .......... .......... .......... .......... .......... 389 GTAGGAGTAC AACTTACATT TTGAGGATAT ATACTAAAAT CAACAAGTTT ATAAAGTCAC 18207 .......... .......... .......... .......... .......... .......... 389 AAACAACAGA GCATTTCAGA TGTCTATATC TGTGAAAACA ATTGATAGTT GAGTGGCTAT 18147 .......... .......... .......... .......... .......... .......... 389 CAAAGTTATT AACTCATCAA TGAACTCACA GAAAAACTTT CGATTAACTA TAATCGACTA 18087 .......... .......... .......... .......... .......... .......... 389 TCTCTACTCT CCAAGAAGTC AAATCCACTC CTTGTCACAA ACCTCTCAAA GACTCAACTC 18027 .......... .......... .......... .......... .......... .......... 389 TACAAGAAGC CAAATCCACT CCTCCTACGA TAATGACTCT AAGTACGAAT CAAAACACTC 17967 .......... .......... .......... .......... .......... .......... 389 TACTCATGAC AAAAGAAATT CTAACTATAG AACTTCTTAA CTTATATTTC TATGATCTCT 17907 .......... .......... .......... .......... .......... .......... 389 CAAATTGATT GGCCTTTGTG TGTTAGCTCT CTTTTCTTTC TCTCGTTTTT GAAATCTTTT 17847 .......... .......... .......... .......... .......... .......... 389 CTCCCAGCTC TTTTTGAAAT CTGATTGCAT GTCTATCGTC AACTTCGTAA ACCATCATTT 17787 .......... .......... .......... .......... .......... .......... 389 TGTTAGGACC GAAAATCAGC AGGTGTAAAC GCGGAAGCTA GCAAAGCAAA CCTCAAAAGA 17727 || | |||||| ||| |||||||||| |||||||||| |||||||||| |||||||||| ......GATC GAAAATAAGC AGGTGTAAAC GCGGAAGCTA GCAAAGCAAA CCTCAAAAGA 443 CCACGAGTAA GAAGACAACG AGAAATATAC CAAAACACAC AAAGATTTAA TGTGGTTCGG 17667 | |||||||| |||||||||| |||||||||| | ||| |||| |||||||||| |||||| CTACGAGTAA GAAGACAACG AGAAATATAC CCAAAGACAC AAAGATTTAA CGTGGTT... 500 TCAATCGACC TACGTCCACA AAGGAGATGA GCAATCCACT ATAAATATGA GAGTACAAAA 17607 .......... .......... .......... .......... .......... .......... 500 TACAGAGAGA AACAACCTCA ACCAATTCAC TCGGAATACA TGGGAGGTTC ACACAAGTGA 17547 .......... .......... .......... .......... .......... .......... 500 TAATGTATCC AACTTGTGAC CCATAAATTC TCTCCCTAAC CAAAACTCTC AAAGCTCTTA 17487 .......... .......... .......... .......... .......... .......... 500 AGACTACATT GTGAATGCTG ACTAAGTTAG AAGGAACATT TCTCTATTTA TAGAGTCCTA 17427 .......... .......... .......... .......... .......... .......... 500 AACCTTTTCC TACAAGAAAA TGATTAGTCA ATCAAAACCT TCCCCTTAAA GGAAAACCTA 17367 .......... .......... .......... .......... .......... .......... 500 TTTATGATAA GAAATTTAGG GAAAATAAAA CCCAACACAT TTTCCCTCTT TTTTGATGAT 17307 | |||||||| | ||||| | .......... .......... GCAAATAAAA CTCAACATGT .......... .......... 520 GACAAATCGT CTACTCCTAT TTCCTGTATA AGGTCAATAC ACACAGTACA CAAGAGCAAT 17247 .......... .......... .......... .......... .......... .......... 520 ACATATCAAA AAGAAGAGAA AAGCGTTAAA ACAGTAAACC AAGCCAACGA AAACGCAGAG 17187 .......... .......... .......... .......... .......... .......... 520 CTCCGGAAGA GCAACATCGC GTAGAACACA ACAAGATACC TCCAATCTAA TGATATTAGC 17127 .......... .......... .......... .......... .......... .......... 520 CATCTGTAAA CATATGCAAA AACATGCAAG AACGAAGGAA GCAGAGGATC CGAGATACAC 17067 .......... .......... .......... .......... .......... .......... 520 CAACATTTTA AGCTCACAAA ATATTCAGTC TAAGCACAAA ACTCAAAAGA ACATAACAAT 17007 .......... .......... .......... .......... .......... .......... 520 GTCTTCAGTC CAAAAGTATA AGAAACTAGA CCAGAAAGCA GGGATCAAGA AGAGGAATGA 16947 .......... .......... .......... .......... .......... .......... 520 TTGGGGTTTG GAGGACAGGA TGAAGAAGCA AGTAACTGGA GGATCCAGTC CACTCTAGCG 16887 .......... .......... .......... .......... .......... .......... 520 TTGCTATCAA GCTTCTTCTG TACTAACTGA TCCTTCAATC AACCAACTTC TTCTTTAGAT 16827 .......... .......... .......... .......... .......... .......... 520 GCAGTTAAAT CAGTATGCAT TTTCAGCCAG TAGATTTTCA CACTTTTCCC TTGCAATCTT 16767 .......... .......... .......... .......... .......... .......... 520 AAGATCCCAA ATTAGTAGAC GAGTAACAGG TCCAGAAGCC CGCGGAGATG CAATAGGAAC 16707 .......... .......... .......... .......... .......... .......... 520 CTGCACGAGT TAAAGCTCTT CCCTCACCCA ATGGGCGCAC AGCAAACTCA TTGAACACTA 16647 .......... .......... .......... .......... .......... .......... 520 AAAGGTTTAA ACTGCATCAA ATTTTGGAGG CAAGTTGCTT TTGATTCTTA TGTAAGTTTG 16587 .......... .......... .......... .......... .......... .......... 520 ACGACAAGGA ATTTAGGCAG CTACTCCCGG AGACTACACT TAGATGGCTG GAAGGAGAGG 16527 .......... .......... .......... .......... .......... .......... 520 ACTTGATAAA ACTGTTACAG TTGTGGTGAT ATAATTGGAA GCATTCTCAA AGTTGTGTAA 16467 .......... .......... .......... .......... .......... .......... 520 ATACGAAAAG AAAATCTTGT GTTGAGCATT TTAAATCTCA TTTTCAACTT CCATAAATCA 16407 .......... .......... .......... .......... .......... .......... 520 AGCCAACAAC TAAGATAAAA TACACTCGTG CGAAATTGAA TTACATAAGA GAGAAAACTG 16347 .......... .......... .......... .......... .......... .......... 520 GTAACTAAAT AACATACAAG AGAAGGTTGG TAATGATTCC ACCTAATGCC GACTACTAAC 16287 .......... .......... .......... .......... .......... .......... 520 AAGCTGTAGC CTCATCTTTT TGAGTGTTGA AAGAGCATCC TTCATGCTAA TTCTTGCATC 16227 .......... .......... .......... .......... .......... .......... 520 AGGTCTCACT AAAGTGCACT TCAAAGCTAA TTCCATGACA GATGACAAAC ATTGCATCTT 16167 .......... .......... .......... .......... .......... .......... 520 TGCAGCGATT TGTTCATCTC CGGGCTGTAC CAAATTAGAA TCCACCACCT TGTGAAGTTC 16107 .......... .......... .......... .......... .......... .......... 520 ACCCGGAAAG GAATCACTAA TCCAGCTTTG TATGCTCAAG TCTCCAGTAA ATATGTCATC 16047 .......... .......... .......... .......... .......... .......... 520 ACTTGGTCTT GTTCGTGTGA ACGTCTCCAT CATCAGGATA CCAAAACTAT AAACATCACA 15987 .......... .......... .......... .......... .......... .......... 520 ACTCGTGGAT ACTATTCCAT CTTGTCCATA CTCTGTATTC ATGGTCGAAA ATGACCACAA 15927 .......... .......... .......... .......... .......... .......... 520 ATCAATTTAT ACATAGGGGA AAGAATTGTT TTGAGTATTT AAAGGCGATA CGAGAAAACT 15867 .......... .......... .......... .......... .......... .......... 520 TAAAATATAC CTGGAGCAAT ATATCCAATG GTTGCAACTG TCCTTGTTTG AACAAAAGCC 15807 .......... .......... .......... .......... .......... .......... 520 TCCCCTGCAC CTAACATTTT TGCAATGCCA AAATCACTTA CATGAGCAAC CATTTCTTCA 15747 .......... .......... .......... .......... .......... .......... 520 TCTAACAAGA CATTACTTGG TTTCAAGTCA CAATGCACTA CAGGCGTTGA ATAGCCATTG 15687 .......... .......... .......... .......... .......... .......... 520 TGGAGATAGT TCATTGCAGA TGCAACATCT ATCATTACAT CCAATCTCTG CAATAAGTTC 15627 .......... .......... .......... .......... .......... .......... 520 AAGAACAAAT TGTGAGAGTA TAACCATTTA TCAAGTGTCC CGTTGGGCAT GTATTCCAAC 15567 .......... .......... .......... .......... .......... .......... 520 ACTAGGGCCT TGAAATCAAG ATTGGAGCAG CTGGTAATGA CTTTGGCAAG ATTTCTGTGG 15507 .......... .......... .......... .......... .......... .......... 520 CGAAGATTGC GAAGTATCTC ACATTCCGTG TCAAAACTTT TGAATGCACC CTCCAATTGC 15447 .......... .......... .......... .......... .......... .......... 520 ACATTGAATA CCTTTGCTGC AAAAATGATA CCATCCTTAA GTACCCCTTT ATAAACCCTG 15387 .......... .......... .......... .......... .......... .......... 520 CTGAAACTCC CATTACCAAG CAAGTTGGTT TCGTTGAATC CTTCAGTTGC CTGTTCAAGT 15327 .......... .......... .......... .......... .......... .......... 520 TCATAATAGG AAATTCTTTC ATGCCCTCTT ACGAGAGACA GATCCTTTTG ACTAGCATTC 15267 .......... .......... .......... .......... .......... .......... 520 TTCTTTGTGT TTCTCAATCT TAACACGACA AATCCAACAG TCAACATGAA GAGTGATCCT 15207 .......... .......... .......... .......... .......... .......... 520 ATCCCTAATA GAATATATAA ACCTGTAAGC ACTCTTTTTC TTCTTGATTT CTTTGTAGAT 15147 ||| || | |||| .......... .AATTGATTA ACCT...... .......... .......... .......... 533 TTGGTTGGGC ATGGTTTTAC GTTAAACCGG GAGTCACCAC AAAGTGCATC ATTGGACAAG 15087 .......... .......... .......... .......... .......... .......... 533 AAAGACTGAC TGGTTACATT TGCAAAGGGA CCATCAGTGG GAATTTCTCC ACTGAGTTCA 15027 .......... .......... .......... .......... .......... .......... 533 TTGAAAGAGA AATTTAGGTA TTTGAGATAC ACAAGAGCTT CTAATGACTT TGGAATTTCA 14967 .......... .......... .......... .......... .......... .......... 533 CCGCTAAGAT TGTTATAGGA CAAATCCAAG TATTCCAATG CCAACAATTT GTCAAATGAT 14907 .......... .......... .......... .......... .......... .......... 533 TCAGGAATAG GCCCTTCTAA TCTATTATGT GCTAGAGAAA GATAAATTAA TTTATCTAGG 14847 .......... .......... .......... .......... .......... .......... 533 CCCCCTAGAG TACTAGGAAT CTTACCAGAA AAATAATTAT TTGACAGATC AATCAGTGTT 14787 .......... .......... .......... .......... .......... .......... 533 GCACCCTTCA AGTTTCCGCT CTCTAGCGGA ATTTCTCCAC TCAAATAATT GGATGAAATA 14727 .......... .......... .......... .......... .......... .......... 533 TTGAACTCTA TGATGTTTTG AAGTCCCCCC AATCTTGCAG GTAATCTAGA ATCCAGCTTG 14667 || || |||| .......... .......... .......... .......... GTGAT-TAGA .......... 542 TTGTTATCTA GATAGAGTGT CCTCAAACTA GTAACATTCC CTAAGCATGG TGGAACGGAA 14607 .......... .......... .......... .......... .......... .......... 542 CTAGAAAATT GATTTTCTGA CAATTCTAAT GCACCAAGAT ACTGTAAACT GCAGATAACA 14547 .......... .......... .......... .......... .......... .......... 542 TCTGGTATGG CTCCTTCTAA CTTGTTGCTT CCTAGGTAAA GTTCTTGAAG GTTCAGCATT 14487 .......... .......... .......... .......... .......... .......... 542 CCTTGCACTG TTTTTGGAAT ATGACCTATC AACTGATTGT TCGACAGACT CATCCTTGTC 14427 .......... .......... .......... .......... .......... .......... 542 AATCCAGTAA GATTAGTAAT TTGTTTTGAA ATGACACCCT TCAGTTTACA TTTAGATGCT 14367 .......... .......... .......... .......... .......... .......... 542 TCAAAAATTT GCAAGGAGTT TGAGAAATTA CCAACAGATG CAGGCAAAAC ACCATCCAAC 14307 .......... .......... .......... .......... .......... .......... 542 GGATTACCAC CAAGCGTGAG TACTCTTAGA TTCCTACAGT TTGTCAATGA TTCAAGGAAG 14247 .......... .......... .......... .......... .......... .......... 542 CTCAATGTTG AATCGCTGAC AAAATTATTC CCCCACAAGT TGAGAACCTC AAGGTATTCT 14187 .......... .......... .......... .......... .......... .......... 542 AAGTTACCAA GTGATTTTGA AATTAGACCT GTGAAACTGT TGCTGGAGAG GTCTAACATT 14127 .......... .......... .......... .......... .......... .......... 542 GTGAGTCTTG AAGAATTAGA GATTGAATCA GAGATAAAAC CACTCAGATT ATTTCCTCCA 14067 .......... .......... .......... .......... .......... .......... 542 CAATAAAATA CTTGTAGGTC GGGCATTCCA CGACCTAAAT CTGAAGGCAG AGTACCTGTA 14007 .......... .......... .......... .......... .......... .......... 542 AGCTTGTTTT GTCCAAAATC TATTTTCTGC AGTGTTGACA TGTTGAAAAT GCTGTCAGGG 13947 |||||| ||||| ||| | || | | .......... .......... .......... ..AGTTGACT TGTTGTAAA- GATG--A-AG 566 ATAGAGCCA 13938 ||| | || ATAAACACA 575 hqPGS_C06HBa0054K13.1-16-_SGN-E544264- (20786 20741,20379 20354,18443 18430,17780 17670) ******************************************************************************** EST sequence 17 -strand 550 n (File: SGN-E329886-) 1 AAGCTTGACG GTGTTGGAAA TATCTCTCCA TGGGCTTTCC AACCATAATA ATAACTAGCA 61 CTAATCTTGA ATCAGAAGTT ATGACCGTTT GAAAATGACC GAATCTCACT TTTTTAACTT 121 AAGAAATTTT CTTGATTTTT CCTTTTCTTT CAAAAAATAA TTGGTTTTAG TTTCTTTGCT 181 ATTTCAGGTT ACGAGATGTC ACAGTTTTAC TAATATTCAT GACCTCTATC ATGACCCAAT 241 GTGTTTGTTT TTTTACAGAG TAGGTTCTCT TACATTTGAA TCCATGAATC TTGTTTACTT 301 TGTTGCAGTT AGTCCAAACG ATAACTACTT TGAAAGTGCA TCTGATAAAT GGATGAATAT 361 ATGATCAGTG AAGAAGGCCA AGATTGTAAA AACTTATAAT GGCGATGACA GTACTTTTAA 421 AGTGTGTTGG AACAAAGAAG ATAACAAGGT TTCAACAGTT AGGATCGGAA ATAAGCAGGT 481 GTAACACGGA AGCTAGCAAA GCAAACCTTG AAAGACCACG AGTAAGAACA CAACGAGAAA 541 TATACCAAAA Predicted gene structure (within gDNA segment 23225 to 17092): Exon 1 21822 21769 ( 54 n); cDNA 347 400 ( 54 n); score: 0.620 Intron 1 21768 19102 (2667 n); Pd: 0.000 (s: 0.58), Pa: 0.000 (s: 0) Exon 2 19101 19083 ( 19 n); cDNA 401 419 ( 19 n); score: 0.632 Intron 2 19082 18444 ( 639 n); Pd: 0.968 (s: 0), Pa: 0.908 (s: 0) Exon 3 18443 18430 ( 14 n); cDNA 420 432 ( 13 n); score: 0.643 Intron 3 18429 18345 ( 85 n); Pd: 0.123 (s: 0), Pa: 0.818 (s: 0) Exon 4 18344 18311 ( 34 n); cDNA 433 462 ( 30 n); score: 0.706 Intron 4 18310 17781 ( 530 n); Pd: 0.000 (s: 0), Pa: 0.978 (s: 0.86) Exon 5 17780 17692 ( 89 n); cDNA 463 550 ( 88 n); score: 0.910 MATCH C06HBa0054K13.1-16- SGN-E329886- 0.801 210 0.382 C PGS_C06HBa0054K13.1-16-_SGN-E329886- (21822 21769,19101 19083,18443 18430,18344 18311,17780 17692) Alignment (genomic DNA sequence = upper lines): AAATGAATGA ATACAT-AAA ATTGTAGAAA GCTAAAAAGA AAATAAATTC ATACCATGCA 21764 ||||| |||| ||| || | | || |||| || || | || ||| | ||| AAATGGATGA ATATATGATC AGTGAAGAAG GCCAAGATTG TAA-AAACTT ATAAT..... 400 AATAATTGAA TCCAATAAGG GTGAGGGCCT CCATATGAGT AAATTAATTC ATCGTCAAAC 21704 .......... .......... .......... .......... .......... .......... 400 ATATTTTTTT GTATTTCAAT GACTAATTTA TAATTATTAT TTTGATAATC AAATTTATTT 21644 .......... .......... .......... .......... .......... .......... 400 ATGTTTCACT AATATTCTTG TAAAACTTAT TGTAGATGAC CAAATTTTTT CTTCGAATAC 21584 .......... .......... .......... .......... .......... .......... 400 GAAATTAAAT TACAATACAC AGTAAAAAAA TAGTTTAATT TTTTTATTTA AACTAAGGAA 21524 .......... .......... .......... .......... .......... .......... 400 TGAAAGAAAA AAACAAAATA AGAATAAGAA ACTCAAATAA TTATAATAAA TGAAGTCAAA 21464 .......... .......... .......... .......... .......... .......... 400 AAATAATTTA TGTATGAAAA AAATTAAAAT ATACATTGAA CTTTGATAGA AGAATCATAT 21404 .......... .......... .......... .......... .......... .......... 400 ATATCTCTAA ATAATTTTTT TTAAAAAAAA TTAAAAGTAA TAAATATAAA TTTAAAATAA 21344 .......... .......... .......... .......... .......... .......... 400 ATTTTTTAAC TTCCGTTAAA TGAAGGGTAT ATGTGAGTCA TTTTATAACA GCAGGGGTAA 21284 .......... .......... .......... .......... .......... .......... 400 ATGTGAGCCG TTTGTATAAC GGTAAGGGCA TATATGAGCC ACTTTTATAA CGAGGGGTAT 21224 .......... .......... .......... .......... .......... .......... 400 ATGAGCTCCA AATGACAAAG TTGAGGGGTA TATCAGACCT TTTTCCCTTT TATATATAAC 21164 .......... .......... .......... .......... .......... .......... 400 TATAACTATG ATATTATTCT TTTATCTTTC AAAATTCAAA AACTTTTTTT TACTTGAACA 21104 .......... .......... .......... .......... .......... .......... 400 AGAAGTTAAA GGAAGAAAAT AAAAGGTAGA ATAAAATAAC ATTTAAATAG ACTCAATTGC 21044 .......... .......... .......... .......... .......... .......... 400 TTTCAAGAGT CTTCCATTAT AAAAAGGGAA GTGGAAAAAA ACAAATAATA TCCCCTTTTC 20984 .......... .......... .......... .......... .......... .......... 400 TGCAAAAAAG CAAAGCAATC AGTAAAGCAA AAATATTTAC TTTCCAATAT ACTATCTTAT 20924 .......... .......... .......... .......... .......... .......... 400 TGTTGAGCCA AAGACCAAAG GCACAAAGCA AGGTCAAGGC AGATAATCAA AGAATGCTTT 20864 .......... .......... .......... .......... .......... .......... 400 ACAGTATTAT CTTAAAATTG TGTGACCTTA TAATGGTTAG TTGCCACTTG GTTATTAACC 20804 .......... .......... .......... .......... .......... .......... 400 TTTATTATTT GGAATTCACT AGTTCAAATA AGACAATTTT GTGTTGGTTA TAAATAGTTT 20744 .......... .......... .......... .......... .......... .......... 400 ATATTACAAA AATTCGTTTC AAGTGTTCAA ATTTTAGAAG AAAGAAATTC ACTAATCTCA 20684 .......... .......... .......... .......... .......... .......... 400 CCACATTGAT TACTAATATT AGAGAATGAA TATATATAAT CTAAATTCTC CCCTTCCAAG 20624 .......... .......... .......... .......... .......... .......... 400 TATATGAGAT ATTTACCCGC GGCTGAGATG AGACCACGAC TAATAAGGTG GAGAAGAAGA 20564 .......... .......... .......... .......... .......... .......... 400 TATCAGGCAC AAAACTGAAT AAATTAATTT ATATGGTGAT AATATGTATC TTTAATCCTA 20504 .......... .......... .......... .......... .......... .......... 400 ACATTTAACG TAATATTAAT TTATTTAGCT TTGTCACAGT GAAATTATTT TTTCATGTGG 20444 .......... .......... .......... .......... .......... .......... 400 AGAGCTACAT GACAAAAATT TTAAATAGAT AAGAGAGTGT ATTAACCACA ACATTATAAA 20384 .......... .......... .......... .......... .......... .......... 400 TTAGTCAAGG TGTGTTTCAC TAATCATTAG GTGATTGTTT AGGTCGAAAA CTCATACTTT 20324 .......... .......... .......... .......... .......... .......... 400 CAATAGTTCA AATATAAAAC TTAAAAACTG ATAAAGTTAA GATGTAAATA ATTCTGAGGG 20264 .......... .......... .......... .......... .......... .......... 400 AAAATGCACA GGTACCCCCT CAACCTATGT CCGAAATTTC AGAGACACAC TTATACAACA 20204 .......... .......... .......... .......... .......... .......... 400 CTAAGGTCCT ATTACCCCCT CAACTTATTT TATAAGTAAT TTTCTATCCC TTTTCGACCT 20144 .......... .......... .......... .......... .......... .......... 400 ATCGGACATA GGTTGAGGGG TACTTGTGCA TTTTTTCCCT GAACTTATTT TATGATTGTT 20084 .......... .......... .......... .......... .......... .......... 400 TCTCCTGTAA ATATTTCATC ACTTGGTTTC CTTCTTGTGA ACCTCTCCAT CATTAGGATG 20024 .......... .......... .......... .......... .......... .......... 400 CCAAAACTAT AAACATCACA ACTCGTGGAT ACTATTCCAT CTTGTCCATA CACTGTAATC 19964 .......... .......... .......... .......... .......... .......... 400 TTGGTAAAAA ATGATCATGA AAGCTTCCTA GTTAAAATGA AATATGCCAA AACTGAGAGT 19904 .......... .......... .......... .......... .......... .......... 400 GTCAATCCAT TTATAGGGGA AAGAATTGCT TAACTATAGA AGTTTCTAAT ATACTGGAGC 19844 .......... .......... .......... .......... .......... .......... 400 AATATATCCG ATGGTTGCAG TTGTTCTTGT TTGAACGAAA GCCTCCCCTA CATCTAACAA 19784 .......... .......... .......... .......... .......... .......... 400 TTTTGCAATG CCAAAATCAC TAACTTGACC AACCATTTCT TGATCTAGCA ACATATTGCT 19724 .......... .......... .......... .......... .......... .......... 400 TGGCTTCAAG TCACAATGCA CCACAGGCGT TGAATAGCCA TTGTGGAGAT AGTCCATTGC 19664 .......... .......... .......... .......... .......... .......... 400 AGATGCAACA TCTATCATTA TATCCAATCT CTGCAATAAG TTTAAGAACA AGTTGTGAGA 19604 .......... .......... .......... .......... .......... .......... 400 ATATAACCAT TTATCAAGTG TCCCATTGGG CATGTATTCC AACACCAGGA CCTTGAAATC 19544 .......... .......... .......... .......... .......... .......... 400 AAGGTTGCAG CAGCTTGTTA TGACTTTGGT CAGATTTTTG TGGCGAAGTT CCGGAGGGAT 19484 .......... .......... .......... .......... .......... .......... 400 TCGGCTTCTC TCCATTTTCC CCAAGTTTCT ATTTGGATTA ATGACACATG TCATAGGTTA 19424 .......... .......... .......... .......... .......... .......... 400 AAATAAATGA TTAAGATTTA ATTTTTCAAA CTAAACCTCT AAGCATGATT TAGTTAATAA 19364 .......... .......... .......... .......... .......... .......... 400 ATATATTATA TATCAAGTAT CAAAATTATT ATAATCTCAC AATTTTAGCA ACATATTATT 19304 .......... .......... .......... .......... .......... .......... 400 TTGTCCATAT TATTTATGTA AAAAAGTTTT CTTCCTATTA TTTTTTTTAC TTAGGATCTT 19244 .......... .......... .......... .......... .......... .......... 400 TTTTTTATTT TTCTTTTATA TAATATTTTT TATTGTAATC TTTTGTTAAA GGTATATATT 19184 .......... .......... .......... .......... .......... .......... 400 GGTCCGTGAT TAATAAATTA CCAAGAGATA ATCAAACCAT TTTGACAAAC TAATTTTAAT 19124 .......... .......... .......... .......... .......... .......... 400 TTCATAATAA GATTAAGAAT GGGGTGATAC CAGTACATAC GGTAGGTTAT CTATAGTTTC 19064 || ||| |||||| | .......... .......... ..GGCGATGA CAGTACTTTT A......... .......... 419 CATACTTCTA TTCAGTTAAT TATTCTTCTA ATTAGATAAA AAAAAATATT ATATAAAAGG 19004 .......... .......... .......... .......... .......... .......... 419 AAAAAGAAAA GATCCTAAGT AAAAAGAAAT AATAGGAAGA AAACTTTTTT TACCTATATT 18944 .......... .......... .......... .......... .......... .......... 419 TATGGACAAA ATATAGTCAC AAGCATGATA TTATTCAACA TTTTAACACT CCCACTCAAT 18884 .......... .......... .......... .......... .......... .......... 419 TACTAAAAAC AGCGAGAGGA AGTTGTAATT TGGAGAGGTT GGGAATGCGA AGTTTCAGAA 18824 .......... .......... .......... .......... .......... .......... 419 GGAAAAAGTT GACAAGGAAT AATGTTCCTC CTTGATTTCC TCTATGTTAA ATACAACTTC 18764 .......... .......... .......... .......... .......... .......... 419 TGGACTTTCC GTTTTTCTTG TCTTTCAGCT TAAATATTAT TTAAGTTGTT GTTTATTAGG 18704 .......... .......... .......... .......... .......... .......... 419 AACAGAAAGT TCAGGTAGTT GTGCATTATG ATCATTTCAG AAAGATTAAA ATTCCTCCTT 18644 .......... .......... .......... .......... .......... .......... 419 TATTTCTGTA CAATTCCTTG TCATTATGAA CTAAACTAGT TTTGGTTAGC TTGGTTTGTG 18584 .......... .......... .......... .......... .......... .......... 419 TTTACGAATT TTAGGTTGGA GATAATCATG TCATCAGGCC CTAAACTCTA ATAGTCAGCA 18524 .......... .......... .......... .......... .......... .......... 419 CTCTATGCAG CTAAGTGAAT GAGGGAACGT ACATTTAGCA ACCAATAAAG ACAATCACAG 18464 .......... .......... .......... .......... .......... .......... 419 TCCTGTGCAA CAATATGCAG ATATGTGATT GCAGGCAACA ACTAGTTGCA GTCTGGTTAG 18404 | |||| || | | .......... .......... AAGTGTG-TT GGAA...... .......... .......... 432 CAGGGATATT CAAGTTGTTG ATAATCTCGG AACATAGATT GTTGTCATAT GCGTTCCAGC 18344 | .......... .......... .......... .......... .......... .........C 433 AGAGAATTGA TAAACAAAGT CACACACATG TAGCACAGTC ATGCATTGAA AATGGCCATA 18284 | |||| || | ||||| || || ||| ||| AAAGAA--GA T-AACAAGGT TTCA-ACAGT TAG....... .......... .......... 462 TTATGCAGAC TTGGAATGTA GGAGTACAAC TTACATTTTG AGGATATATA CTAAAATCAA 18224 .......... .......... .......... .......... .......... .......... 462 CAAGTTTATA AAGTCACAAA CAACAGAGCA TTTCAGATGT CTATATCTGT GAAAACAATT 18164 .......... .......... .......... .......... .......... .......... 462 GATAGTTGAG TGGCTATCAA AGTTATTAAC TCATCAATGA ACTCACAGAA AAACTTTCGA 18104 .......... .......... .......... .......... .......... .......... 462 TTAACTATAA TCGACTATCT CTACTCTCCA AGAAGTCAAA TCCACTCCTT GTCACAAACC 18044 .......... .......... .......... .......... .......... .......... 462 TCTCAAAGAC TCAACTCTAC AAGAAGCCAA ATCCACTCCT CCTACGATAA TGACTCTAAG 17984 .......... .......... .......... .......... .......... .......... 462 TACGAATCAA AACACTCTAC TCATGACAAA AGAAATTCTA ACTATAGAAC TTCTTAACTT 17924 .......... .......... .......... .......... .......... .......... 462 ATATTTCTAT GATCTCTCAA ATTGATTGGC CTTTGTGTGT TAGCTCTCTT TTCTTTCTCT 17864 .......... .......... .......... .......... .......... .......... 462 CGTTTTTGAA ATCTTTTCTC CCAGCTCTTT TTGAAATCTG ATTGCATGTC TATCGTCAAC 17804 .......... .......... .......... .......... .......... .......... 462 TTCGTAAACC ATCATTTTGT TAGGACCGAA AATCAGCAGG TGTAAACGCG GAAGCTAGCA 17744 || || | ||| |||||| ||| ||| || |||||||||| .......... .......... ...GATCGGA AATAAGCAGG TGT-AACACG GAAGCTAGCA 498 AAGCAAACCT CAAAAGACCA CGAGTAAGAA GACAACGAGA AATATACCAA AA 17692 |||||||||| |||||||| |||||||||| ||||||||| |||||||||| || AAGCAAACCT TGAAAGACCA CGAGTAAGAA CACAACGAGA AATATACCAA AA 550 hqPGS_C06HBa0054K13.1-16-_SGN-E329886- (18344 18311,17780 17692) ******************************************************************************** EST sequence 2 -strand 747 n (File: SGN-E211090-) 1 CCCATATCAA CGGCTGGATT CAAGCTCTGC CCACAGTCGT AAATAATATC AGATTGCAAA 61 ATGGTAGTCT CTCCGGTCAG GATATCAATC TCCACCTCAC TGACAGCAGC ACCAAAGTTC 121 AAATAACTCG TAAAATCAGA TTCTGGTACA TAATAAGAAT TTGCTGCTAA GTTTACTGAT 181 TCCATTTGTG CCTGCAAAAA GAAGGGGGTG GAGGGACAGA ACTGCAAACT CAGATATGTT 241 AGGACCGAAA ATAAGCAGGT GTAAACGCGG AAGCTAGCAA TACAAACCTC GAAAGACCAC 301 GAGTAAGAAG ACAACGAGAA ATATATCAAA AGACACAAAG ATTTAACGTG GTTCGGTCAA 361 TCAACCTACG TCCACAAAGG AGATGAGCAA TCCACTATAA ATATAAGAGT ACAAAATACA 421 GAGAGAAACA ACCTCAACCA ATTCACTCAG AATACATGGG AGGTTCACAC AAGTGATAAC 481 ATATCAAGCT TGTGACCCAC AGATTCTCCC TCTAACCAAA ACTCTCAAAG CCTGTAAGAC 541 TACATTGTGA ATGCTGATTA AGTTAAAAGG AATATTCATC TATTTATAGA GTCCTAAACC 601 TTTTCCTACA AGAAAAGGAT TAGTCAATTC AAAACCTTTT CCTAAAAGGA AAACCTATTT 661 ATGGTAAGAA ATCAGGGCAA ATAAAATCCA ACAAGATACT TAAAAGATGA GCAAGAGTGG 721 CTAATGGATT TAAATTAACA AATTGTT Predicted gene structure (within gDNA segment 20756 to 15497): Exon 1 18704 18687 ( 18 n); cDNA 219 236 ( 18 n); score: 0.722 Intron 1 18686 17787 ( 900 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.94) Exon 2 17786 17330 ( 457 n); cDNA 237 693 ( 457 n); score: 0.918 MATCH C06HBa0054K13.1-16- SGN-E211090- 0.918 475 0.636 C PGS_C06HBa0054K13.1-16-_SGN-E211090- (18704 18687,17786 17330) Alignment (genomic DNA sequence = upper lines): GAACAGAAAG TTCAGGTAGT TGTGCATTAT GATCATTTCA GAAAGATTAA AATTCCTCCT 18645 |||| | || |||| || GAACTGCAAA CTCAGATA.. .......... .......... .......... .......... 236 TTATTTCTGT ACAATTCCTT GTCATTATGA ACTAAACTAG TTTTGGTTAG CTTGGTTTGT 18585 .......... .......... .......... .......... .......... .......... 236 GTTTACGAAT TTTAGGTTGG AGATAATCAT GTCATCAGGC CCTAAACTCT AATAGTCAGC 18525 .......... .......... .......... .......... .......... .......... 236 ACTCTATGCA GCTAAGTGAA TGAGGGAACG TACATTTAGC AACCAATAAA GACAATCACA 18465 .......... .......... .......... .......... .......... .......... 236 GTCCTGTGCA ACAATATGCA GATATGTGAT TGCAGGCAAC AACTAGTTGC AGTCTGGTTA 18405 .......... .......... .......... .......... .......... .......... 236 GCAGGGATAT TCAAGTTGTT GATAATCTCG GAACATAGAT TGTTGTCATA TGCGTTCCAG 18345 .......... .......... .......... .......... .......... .......... 236 CAGAGAATTG ATAAACAAAG TCACACACAT GTAGCACAGT CATGCATTGA AAATGGCCAT 18285 .......... .......... .......... .......... .......... .......... 236 ATTATGCAGA CTTGGAATGT AGGAGTACAA CTTACATTTT GAGGATATAT ACTAAAATCA 18225 .......... .......... .......... .......... .......... .......... 236 ACAAGTTTAT AAAGTCACAA ACAACAGAGC ATTTCAGATG TCTATATCTG TGAAAACAAT 18165 .......... .......... .......... .......... .......... .......... 236 TGATAGTTGA GTGGCTATCA AAGTTATTAA CTCATCAATG AACTCACAGA AAAACTTTCG 18105 .......... .......... .......... .......... .......... .......... 236 ATTAACTATA ATCGACTATC TCTACTCTCC AAGAAGTCAA ATCCACTCCT TGTCACAAAC 18045 .......... .......... .......... .......... .......... .......... 236 CTCTCAAAGA CTCAACTCTA CAAGAAGCCA AATCCACTCC TCCTACGATA ATGACTCTAA 17985 .......... .......... .......... .......... .......... .......... 236 GTACGAATCA AAACACTCTA CTCATGACAA AAGAAATTCT AACTATAGAA CTTCTTAACT 17925 .......... .......... .......... .......... .......... .......... 236 TATATTTCTA TGATCTCTCA AATTGATTGG CCTTTGTGTG TTAGCTCTCT TTTCTTTCTC 17865 .......... .......... .......... .......... .......... .......... 236 TCGTTTTTGA AATCTTTTCT CCCAGCTCTT TTTGAAATCT GATTGCATGT CTATCGTCAA 17805 .......... .......... .......... .......... .......... .......... 236 CTTCGTAAAC CATCATTTTG TTAGGACCGA AAATCAGCAG GTGTAAACGC GGAAGCTAGC 17745 || |||||||||| |||| ||||| |||||||||| |||||||||| .......... ........TG TTAGGACCGA AAATAAGCAG GTGTAAACGC GGAAGCTAGC 278 AAAGCAAACC TCAAAAGACC ACGAGTAAGA AGACAACGAG AAATATACCA AAACACACAA 17685 || |||||| || ||||||| |||||||||| |||||||||| ||||||| || ||| |||||| AATACAAACC TCGAAAGACC ACGAGTAAGA AGACAACGAG AAATATATCA AAAGACACAA 338 AGATTTAATG TGGTTCGGTC AATCGACCTA CGTCCACAAA GGAGATGAGC AATCCACTAT 17625 |||||||| | |||||||||| |||| ||||| |||||||||| |||||||||| |||||||||| AGATTTAACG TGGTTCGGTC AATCAACCTA CGTCCACAAA GGAGATGAGC AATCCACTAT 398 AAATATGAGA GTACAAAATA CAGAGAGAAA CAACCTCAAC CAATTCACTC GGAATACATG 17565 |||||| ||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| AAATATAAGA GTACAAAATA CAGAGAGAAA CAACCTCAAC CAATTCACTC AGAATACATG 458 GGAGGTTCAC ACAAGTGATA ATGTATCCAA CTTGTGACCC ATAAATTCTC TCCCTAACCA 17505 |||||||||| |||||||||| | |||| | |||||||||| | | |||||| | ||||||| GGAGGTTCAC ACAAGTGATA ACATATCAAG CTTGTGACCC ACAGATTCTC CCTCTAACCA 518 AAACTCTCAA AGCTCTTAAG ACTACATTGT GAATGCTGAC TAAGTTAGAA GGAACATTTC 17445 |||||||||| ||| |||| |||||||||| ||||||||| ||||||| || |||| ||| AAACTCTCAA AGCCTGTAAG ACTACATTGT GAATGCTGAT TAAGTTAAAA GGAATATTCA 578 TCTATTTATA GAGTCCTAAA CCTTTTCCTA CAAGAAAATG ATTAGTCAA- TCAAAACCTT 17386 |||||||||| |||||||||| |||||||||| |||||||| | ||||||||| |||||||||| TCTATTTATA GAGTCCTAAA CCTTTTCCTA CAAGAAAAGG ATTAGTCAAT TCAAAACCTT 638 CCCCTTAAAG GAAAACCTAT TTATGATAAG AAATTTAGGG AAAATAAAAC CCAACA 17330 ||| |||| |||||||||| ||||| |||| ||| | |||| |||||||| |||||| TTCCTAAAAG GAAAACCTAT TTATGGTAAG AAA-TCAGGG CAAATAAAAT CCAACA 693 hqPGS_C06HBa0054K13.1-16-_SGN-E211090- (17786 17330) ******************************************************************************** EST sequence 24 +strand 574 n (File: SGN-E206285+) 1 AACTAAGTAG AGCTATGTAT ATTTTGTCTG CAGAAGCAAG GGCTTAATTT ACAACTATAG 61 GTGGCGTACG TATAATGCAT GGACCGAAAA ATAAGCAGGT GTAAACGCGG AAGCTAGCAA 121 TGCTAACATC GAAAGACCAC GAGTAAGAAG ACAACGAGAA ATATACCAAA AGACACAAAG 181 ATTTAACGTG GTTCGGTCAA TCGACCTATG TCCACAAAGG AGATGAGCAA TCCACTATAA 241 ATATGAGAGT ACAAAATACA GAGGGAAACA ATCTCAACCA ATTCACTCAG AATACATGGG 301 AGGTTCACAC AAGTAATAAC GTATCAAGCT TGTGACCCAC AAATTCTCCC TCTAACCAAA 361 ACTCTCAAAG CCCTTAAGAC TACATTGTGA ATGTTAACTA AGTTAAAAGG AACATGCCTC 421 TATTTATAGA ATCCTAAACC TTTCCCTACA AGAAAAGGAT TAGTCAATCC AAAACCTTTT 481 CCTACAAGGA AAATCTATTT ATGGTAAGAA ATTTAGAGCA AATAAAACCC AACAAACATC 541 TATGATACGT GAACTTGCTT GGCCCTATAT GTTT Predicted gene structure (within gDNA segment 19299 to 15050): Exon 1 17780 17330 ( 451 n); cDNA 82 534 ( 453 n); score: 0.911 MATCH C06HBa0054K13.1-16- SGN-E206285+ 0.911 451 0.786 C PGS_C06HBa0054K13.1-16-_SGN-E206285+ (17780 17330) Alignment (genomic DNA sequence = upper lines): GACCG-AAAA TCAGCAGGTG TAAACGCGGA AGCTAGCAAA GCAAACCTCA AAAGACCACG 17722 ||||| |||| | |||||||| |||||||||| ||||||||| || ||| || |||||||||| GACCGAAAAA TAAGCAGGTG TAAACGCGGA AGCTAGCAAT GCTAACATCG AAAGACCACG 141 AGTAAGAAGA CAACGAGAAA TATACCAAAA CACACAAAGA TTTAATGTGG TTCGGTCAAT 17662 |||||||||| |||||||||| |||||||||| ||||||||| ||||| |||| |||||||||| AGTAAGAAGA CAACGAGAAA TATACCAAAA GACACAAAGA TTTAACGTGG TTCGGTCAAT 201 CGACCTACGT CCACAAAGGA GATGAGCAAT CCACTATAAA TATGAGAGTA CAAAATACAG 17602 ||||||| || |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGACCTATGT CCACAAAGGA GATGAGCAAT CCACTATAAA TATGAGAGTA CAAAATACAG 261 AGAGAAACAA CCTCAACCAA TTCACTCGGA ATACATGGGA GGTTCACACA AGTGATAATG 17542 || ||||||| ||||||||| ||||||| || |||||||||| |||||||||| ||| |||| | AGGGAAACAA TCTCAACCAA TTCACTCAGA ATACATGGGA GGTTCACACA AGTAATAACG 321 TATCCAACTT GTGACCCATA AATTCTCTCC CTAACCAAAA CTCTCAAAGC TCTTAAGACT 17482 |||| | ||| |||||||| | ||||||| | |||||||||| |||||||||| ||||||||| TATCAAGCTT GTGACCCACA AATTCTCCCT CTAACCAAAA CTCTCAAAGC CCTTAAGACT 381 ACATTGTGAA TGCTGACTAA GTTAGAAGGA ACATTTCTCT ATTTATAGAG TCCTAAACCT 17422 |||||||||| || | ||||| |||| ||||| |||| |||| ||||||||| |||||||||| ACATTGTGAA TGTTAACTAA GTTAAAAGGA ACATGCCTCT ATTTATAGAA TCCTAAACCT 441 TTTCCTACAA GAAAATGATT AGTCAAT-CA AAACCTTCCC CTTAAAGGAA AACCTATTTA 17363 || ||||||| ||||| |||| ||||||| || ||||||| | || |||||| || ||||||| TTCCCTACAA GAAAAGGATT AGTCAATCCA AAACCTTTTC CTACAAGGAA AATCTATTTA 501 TGATAAGAAA TTTAGGGAAA ATAAAACCCA ACA 17330 || ||||||| ||||| | || |||||||||| ||| TGGTAAGAAA TTTAGAGCAA ATAAAACCCA ACA 534 hqPGS_C06HBa0054K13.1-16-_SGN-E206285+ (17780 17330) ******************************************************************************** EST sequence 7 -strand 490 n (File: SGN-E205772-) 1 GGTGTAAACG CGGAAGCTAG CAATACAAAC CTCGAAAGAC CACGAGTAAG AAGACAACGA 61 GAAATATATC AAAAGACACA AAGATTTAAC GTGGTTCGGT CAATCAACCT ACGTCCACAA 121 AGGAGATGAG CAATCCACTA TAAATATAAG AGTACAAAAT ACAGAGAGAA TCAACCTCAA 181 CCAATTCACT CAGAATACAT GGGAGGTTCA CACAAGTGAT AACATATCAA GCTTGTGACC 241 CACAGATTCT CCCTCTAACC AAAACTCTCA AAGCCTGTAA GAGTACATTG TGAATGCTGA 301 TTAAGTTAAA AGGAATATTC ATCTATTTAT AGAGTCCTAA ACCTTTTCCT ACAAGAAAAG 361 GATTAGTCAA TTCAAAACCT TTTCCTAAAA GGAAAACCTA TTTATGGTAA GAAATCAGGG 421 CAAATAAAAT CCAACAAGAT ACTTAAAAGA TGAGCAAGAG TGGCTAATGG ATTTAAATTA 481 ACAAATTGTT Predicted gene structure (within gDNA segment 18375 to 15497): Exon 1 17765 17330 ( 436 n); cDNA 1 436 ( 436 n); score: 0.912 MATCH C06HBa0054K13.1-16- SGN-E205772- 0.912 436 0.890 C PGS_C06HBa0054K13.1-16-_SGN-E205772- (17765 17330) Alignment (genomic DNA sequence = upper lines): GGTGTAAACG CGGAAGCTAG CAAAGCAAAC CTCAAAAGAC CACGAGTAAG AAGACAACGA 17706 |||||||||| |||||||||| ||| ||||| ||| |||||| |||||||||| |||||||||| GGTGTAAACG CGGAAGCTAG CAATACAAAC CTCGAAAGAC CACGAGTAAG AAGACAACGA 60 GAAATATACC AAAACACACA AAGATTTAAT GTGGTTCGGT CAATCGACCT ACGTCCACAA 17646 |||||||| | |||| ||||| ||||||||| |||||||||| ||||| |||| |||||||||| GAAATATATC AAAAGACACA AAGATTTAAC GTGGTTCGGT CAATCAACCT ACGTCCACAA 120 AGGAGATGAG CAATCCACTA TAAATATGAG AGTACAAAAT ACAGAGAGAA ACAACCTCAA 17586 |||||||||| |||||||||| ||||||| || |||||||||| |||||||||| ||||||||| AGGAGATGAG CAATCCACTA TAAATATAAG AGTACAAAAT ACAGAGAGAA TCAACCTCAA 180 CCAATTCACT CGGAATACAT GGGAGGTTCA CACAAGTGAT AATGTATCCA ACTTGTGACC 17526 |||||||||| | |||||||| |||||||||| |||||||||| || |||| | ||||||||| CCAATTCACT CAGAATACAT GGGAGGTTCA CACAAGTGAT AACATATCAA GCTTGTGACC 240 CATAAATTCT CTCCCTAACC AAAACTCTCA AAGCTCTTAA GACTACATTG TGAATGCTGA 17466 || | ||||| | | |||||| |||||||||| |||| ||| || ||||||| |||||||||| CACAGATTCT CCCTCTAACC AAAACTCTCA AAGCCTGTAA GAGTACATTG TGAATGCTGA 300 CTAAGTTAGA AGGAACATTT CTCTATTTAT AGAGTCCTAA ACCTTTTCCT ACAAGAAAAT 17406 ||||||| | ||||| ||| ||||||||| |||||||||| |||||||||| ||||||||| TTAAGTTAAA AGGAATATTC ATCTATTTAT AGAGTCCTAA ACCTTTTCCT ACAAGAAAAG 360 GATTAGTCAA -TCAAAACCT TCCCCTTAAA GGAAAACCTA TTTATGATAA GAAATTTAGG 17347 |||||||||| ||||||||| | ||| ||| |||||||||| |||||| ||| |||| | ||| GATTAGTCAA TTCAAAACCT TTTCCTAAAA GGAAAACCTA TTTATGGTAA GAAA-TCAGG 419 GAAAATAAAA CCCAACA 17330 | |||||||| |||||| GCAAATAAAA TCCAACA 436 hqPGS_C06HBa0054K13.1-16-_SGN-E205772- (17765 17330) ******************************************************************************** EST sequence 8 -strand 456 n (File: SGN-E205773-) 1 AAAGACCACG AGTAAGAAGC CATCGAGAAA TATATCAAAA GACACAAAGA TTTAACGTGG 61 TTCGGTCAAT CAACCTACGT CCACAAAGTA GATGAGCAAT CCACTATAAA TATAAGAGTA 121 CAAAATACAG AGAGAAACAG CTTCAACCAA TTCACTCAGA ATACATGGTA GGTTCACACA 181 AGTGATAACA TATCAAGCTT GTGACCCACA GATTCTCCCT CTAACCAAAA CTCTCAAAGC 241 CTGTAAGACT ACATTGTGAA TGCTGATTAA GTTAAAAGGA ATATTCATCT ATTTATAGAG 301 TCCTAAACCT TTTCCTACAA GAAAAGGATT AGTCAATTCA AAACCTTTTC CTAAAAGGAA 361 AACCTATTTA TGGTAAGAAA TCAGGGCAAA TAAAATCCAA CAAGATACTT AAAAGATGAG 421 CAAGAGTGGC TAATGGATTT AAATTAACTA ATTGTT Predicted gene structure (within gDNA segment 18989 to 15497): Exon 1 17731 17330 ( 402 n); cDNA 1 402 ( 402 n); score: 0.902 MATCH C06HBa0054K13.1-16- SGN-E205773- 0.902 402 0.882 C PGS_C06HBa0054K13.1-16-_SGN-E205773- (17731 17330) Alignment (genomic DNA sequence = upper lines): AAAGACCACG AGTAAGAAGA CAACGAGAAA TATACCAAAA CACACAAAGA TTTAATGTGG 17672 |||||||||| ||||||||| || ||||||| |||| ||||| ||||||||| ||||| |||| AAAGACCACG AGTAAGAAGC CATCGAGAAA TATATCAAAA GACACAAAGA TTTAACGTGG 60 TTCGGTCAAT CGACCTACGT CCACAAAGGA GATGAGCAAT CCACTATAAA TATGAGAGTA 17612 |||||||||| | |||||||| |||||||| | |||||||||| |||||||||| ||| |||||| TTCGGTCAAT CAACCTACGT CCACAAAGTA GATGAGCAAT CCACTATAAA TATAAGAGTA 120 CAAAATACAG AGAGAAACAA CCTCAACCAA TTCACTCGGA ATACATGGGA GGTTCACACA 17552 |||||||||| ||||||||| | |||||||| ||||||| || |||||||| | |||||||||| CAAAATACAG AGAGAAACAG CTTCAACCAA TTCACTCAGA ATACATGGTA GGTTCACACA 180 AGTGATAATG TATCCAACTT GTGACCCATA AATTCTCTCC CTAACCAAAA CTCTCAAAGC 17492 |||||||| |||| | ||| |||||||| | |||||| | |||||||||| |||||||||| AGTGATAACA TATCAAGCTT GTGACCCACA GATTCTCCCT CTAACCAAAA CTCTCAAAGC 240 TCTTAAGACT ACATTGTGAA TGCTGACTAA GTTAGAAGGA ACATTTCTCT ATTTATAGAG 17432 ||||||| |||||||||| |||||| ||| |||| ||||| | ||| ||| |||||||||| CTGTAAGACT ACATTGTGAA TGCTGATTAA GTTAAAAGGA ATATTCATCT ATTTATAGAG 300 TCCTAAACCT TTTCCTACAA GAAAATGATT AGTCAA-TCA AAACCTTCCC CTTAAAGGAA 17373 |||||||||| |||||||||| ||||| |||| |||||| ||| ||||||| | || ||||||| TCCTAAACCT TTTCCTACAA GAAAAGGATT AGTCAATTCA AAACCTTTTC CTAAAAGGAA 360 AACCTATTTA TGATAAGAAA TTTAGGGAAA ATAAAACCCA ACA 17330 |||||||||| || ||||||| | |||| || |||||| ||| ||| AACCTATTTA TGGTAAGAAA -TCAGGGCAA ATAAAATCCA ACA 402 hqPGS_C06HBa0054K13.1-16-_SGN-E205773- (17731 17330) ******************************************************************************** EST sequence 27 +strand 535 n (File: SGN-E243194+) 1 AAAAGACATA AAGATTTAAC GTGGTTCGGT CAATCGACCT ACGTCCACAA AGGAGATGAG 61 CAATCCACTA TAAATATGAG AGTACAAAAT ACAGAGGGAA ACAACCTCAA CCAATTCACT 121 CAGAATACAT GGGAGGTTCA CACAAGTGAT AACGTATCAA GCTTGTGACC CACAAATTCT 181 CCCTCTAACC AAAACTCTCA AAGCACTTAA GACTACATTT TGAATGCTGA TTAAGTTAGA 241 AGAAAAATGC CTCTATTTAT GGAGTCCTAA ACCTTTTCCT ACAAGAAAAG GATTAGTCAA 301 TCCAAAACCT TTTCCTACAA GAAAAGGATT AGTCAATCCA AAACCTTTTC CTACAAGGAA 361 AACCTATTTA TGGTAAGAAA TTTAGGGCAA ATAAAACCCA ACAAGTCTCC CCCTTGGCCT 421 GAATTTCTGA CAAATAAACT TGTCCACCTT CTTCACTTAA TCTTCAACAA CTTGCTTCTC 481 CTCTCCATAA TCTCCTTTGC AAAATTTATG TCTCAACACA AAGAATCTCT CTGAA Predicted gene structure (within gDNA segment 18475 to 13104): Exon 1 17695 17372 ( 324 n); cDNA 1 325 ( 325 n); score: 0.915 Intron 1 17371 13949 (3423 n); Pd: 0.000 (s: 0.83), Pa: 0.895 (s: 0) Exon 2 13948 13938 ( 11 n); cDNA 326 335 ( 10 n); score: 0.727 MATCH C06HBa0054K13.1-16- SGN-E243194+ 0.915 335 0.626 C PGS_C06HBa0054K13.1-16-_SGN-E243194+ (17695 17372,13948 13938) Alignment (genomic DNA sequence = upper lines): AAAACACACA AAGATTTAAT GTGGTTCGGT CAATCGACCT ACGTCCACAA AGGAGATGAG 17636 |||| ||| | ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAAGACATA AAGATTTAAC GTGGTTCGGT CAATCGACCT ACGTCCACAA AGGAGATGAG 60 CAATCCACTA TAAATATGAG AGTACAAAAT ACAGAGAGAA ACAACCTCAA CCAATTCACT 17576 |||||||||| |||||||||| |||||||||| |||||| ||| |||||||||| |||||||||| CAATCCACTA TAAATATGAG AGTACAAAAT ACAGAGGGAA ACAACCTCAA CCAATTCACT 120 CGGAATACAT GGGAGGTTCA CACAAGTGAT AATGTATCCA ACTTGTGACC CATAAATTCT 17516 | |||||||| |||||||||| |||||||||| || ||||| | ||||||||| || ||||||| CAGAATACAT GGGAGGTTCA CACAAGTGAT AACGTATCAA GCTTGTGACC CACAAATTCT 180 CTCCCTAACC AAAACTCTCA AAGCTCTTAA GACTACATTG TGAATGCTGA CTAAGTTAGA 17456 | | |||||| |||||||||| |||| ||||| ||||||||| |||||||||| ||||||||| CCCTCTAACC AAAACTCTCA AAGCACTTAA GACTACATTT TGAATGCTGA TTAAGTTAGA 240 AGGAACATTT CTCTATTTAT AGAGTCCTAA ACCTTTTCCT ACAAGAAAAT GATTAGTCAA 17396 || || || |||||||||| ||||||||| |||||||||| ||||||||| |||||||||| AGAAAAATGC CTCTATTTAT GGAGTCCTAA ACCTTTTCCT ACAAGAAAAG GATTAGTCAA 300 T-CAAAACCT TCCCCTTAAA GGAAAACCTA TTTATGATAA GAAATTTAGG GAAAATAAAA 17337 | |||||||| | ||| || | ||| TCCAAAACCT TTTCCTACAA GAAAA..... .......... .......... .......... 325 CCCAACACAT TTTCCCTCTT TTTTGATGAT GACAAATCGT CTACTCCTAT TTCCTGTATA 17277 .......... .......... .......... .......... .......... .......... 325 AGGTCAATAC ACACAGTACA CAAGAGCAAT ACATATCAAA AAGAAGAGAA AAGCGTTAAA 17217 .......... .......... .......... .......... .......... .......... 325 ACAGTAAACC AAGCCAACGA AAACGCAGAG CTCCGGAAGA GCAACATCGC GTAGAACACA 17157 .......... .......... .......... .......... .......... .......... 325 ACAAGATACC TCCAATCTAA TGATATTAGC CATCTGTAAA CATATGCAAA AACATGCAAG 17097 .......... .......... .......... .......... .......... .......... 325 AACGAAGGAA GCAGAGGATC CGAGATACAC CAACATTTTA AGCTCACAAA ATATTCAGTC 17037 .......... .......... .......... .......... .......... .......... 325 TAAGCACAAA ACTCAAAAGA ACATAACAAT GTCTTCAGTC CAAAAGTATA AGAAACTAGA 16977 .......... .......... .......... .......... .......... .......... 325 CCAGAAAGCA GGGATCAAGA AGAGGAATGA TTGGGGTTTG GAGGACAGGA TGAAGAAGCA 16917 .......... .......... .......... .......... .......... .......... 325 AGTAACTGGA GGATCCAGTC CACTCTAGCG TTGCTATCAA GCTTCTTCTG TACTAACTGA 16857 .......... .......... .......... .......... .......... .......... 325 TCCTTCAATC AACCAACTTC TTCTTTAGAT GCAGTTAAAT CAGTATGCAT TTTCAGCCAG 16797 .......... .......... .......... .......... .......... .......... 325 TAGATTTTCA CACTTTTCCC TTGCAATCTT AAGATCCCAA ATTAGTAGAC GAGTAACAGG 16737 .......... .......... .......... .......... .......... .......... 325 TCCAGAAGCC CGCGGAGATG CAATAGGAAC CTGCACGAGT TAAAGCTCTT CCCTCACCCA 16677 .......... .......... .......... .......... .......... .......... 325 ATGGGCGCAC AGCAAACTCA TTGAACACTA AAAGGTTTAA ACTGCATCAA ATTTTGGAGG 16617 .......... .......... .......... .......... .......... .......... 325 CAAGTTGCTT TTGATTCTTA TGTAAGTTTG ACGACAAGGA ATTTAGGCAG CTACTCCCGG 16557 .......... .......... .......... .......... .......... .......... 325 AGACTACACT TAGATGGCTG GAAGGAGAGG ACTTGATAAA ACTGTTACAG TTGTGGTGAT 16497 .......... .......... .......... .......... .......... .......... 325 ATAATTGGAA GCATTCTCAA AGTTGTGTAA ATACGAAAAG AAAATCTTGT GTTGAGCATT 16437 .......... .......... .......... .......... .......... .......... 325 TTAAATCTCA TTTTCAACTT CCATAAATCA AGCCAACAAC TAAGATAAAA TACACTCGTG 16377 .......... .......... .......... .......... .......... .......... 325 CGAAATTGAA TTACATAAGA GAGAAAACTG GTAACTAAAT AACATACAAG AGAAGGTTGG 16317 .......... .......... .......... .......... .......... .......... 325 TAATGATTCC ACCTAATGCC GACTACTAAC AAGCTGTAGC CTCATCTTTT TGAGTGTTGA 16257 .......... .......... .......... .......... .......... .......... 325 AAGAGCATCC TTCATGCTAA TTCTTGCATC AGGTCTCACT AAAGTGCACT TCAAAGCTAA 16197 .......... .......... .......... .......... .......... .......... 325 TTCCATGACA GATGACAAAC ATTGCATCTT TGCAGCGATT TGTTCATCTC CGGGCTGTAC 16137 .......... .......... .......... .......... .......... .......... 325 CAAATTAGAA TCCACCACCT TGTGAAGTTC ACCCGGAAAG GAATCACTAA TCCAGCTTTG 16077 .......... .......... .......... .......... .......... .......... 325 TATGCTCAAG TCTCCAGTAA ATATGTCATC ACTTGGTCTT GTTCGTGTGA ACGTCTCCAT 16017 .......... .......... .......... .......... .......... .......... 325 CATCAGGATA CCAAAACTAT AAACATCACA ACTCGTGGAT ACTATTCCAT CTTGTCCATA 15957 .......... .......... .......... .......... .......... .......... 325 CTCTGTATTC ATGGTCGAAA ATGACCACAA ATCAATTTAT ACATAGGGGA AAGAATTGTT 15897 .......... .......... .......... .......... .......... .......... 325 TTGAGTATTT AAAGGCGATA CGAGAAAACT TAAAATATAC CTGGAGCAAT ATATCCAATG 15837 .......... .......... .......... .......... .......... .......... 325 GTTGCAACTG TCCTTGTTTG AACAAAAGCC TCCCCTGCAC CTAACATTTT TGCAATGCCA 15777 .......... .......... .......... .......... .......... .......... 325 AAATCACTTA CATGAGCAAC CATTTCTTCA TCTAACAAGA CATTACTTGG TTTCAAGTCA 15717 .......... .......... .......... .......... .......... .......... 325 CAATGCACTA CAGGCGTTGA ATAGCCATTG TGGAGATAGT TCATTGCAGA TGCAACATCT 15657 .......... .......... .......... .......... .......... .......... 325 ATCATTACAT CCAATCTCTG CAATAAGTTC AAGAACAAAT TGTGAGAGTA TAACCATTTA 15597 .......... .......... .......... .......... .......... .......... 325 TCAAGTGTCC CGTTGGGCAT GTATTCCAAC ACTAGGGCCT TGAAATCAAG ATTGGAGCAG 15537 .......... .......... .......... .......... .......... .......... 325 CTGGTAATGA CTTTGGCAAG ATTTCTGTGG CGAAGATTGC GAAGTATCTC ACATTCCGTG 15477 .......... .......... .......... .......... .......... .......... 325 TCAAAACTTT TGAATGCACC CTCCAATTGC ACATTGAATA CCTTTGCTGC AAAAATGATA 15417 .......... .......... .......... .......... .......... .......... 325 CCATCCTTAA GTACCCCTTT ATAAACCCTG CTGAAACTCC CATTACCAAG CAAGTTGGTT 15357 .......... .......... .......... .......... .......... .......... 325 TCGTTGAATC CTTCAGTTGC CTGTTCAAGT TCATAATAGG AAATTCTTTC ATGCCCTCTT 15297 .......... .......... .......... .......... .......... .......... 325 ACGAGAGACA GATCCTTTTG ACTAGCATTC TTCTTTGTGT TTCTCAATCT TAACACGACA 15237 .......... .......... .......... .......... .......... .......... 325 AATCCAACAG TCAACATGAA GAGTGATCCT ATCCCTAATA GAATATATAA ACCTGTAAGC 15177 .......... .......... .......... .......... .......... .......... 325 ACTCTTTTTC TTCTTGATTT CTTTGTAGAT TTGGTTGGGC ATGGTTTTAC GTTAAACCGG 15117 .......... .......... .......... .......... .......... .......... 325 GAGTCACCAC AAAGTGCATC ATTGGACAAG AAAGACTGAC TGGTTACATT TGCAAAGGGA 15057 .......... .......... .......... .......... .......... .......... 325 CCATCAGTGG GAATTTCTCC ACTGAGTTCA TTGAAAGAGA AATTTAGGTA TTTGAGATAC 14997 .......... .......... .......... .......... .......... .......... 325 ACAAGAGCTT CTAATGACTT TGGAATTTCA CCGCTAAGAT TGTTATAGGA CAAATCCAAG 14937 .......... .......... .......... .......... .......... .......... 325 TATTCCAATG CCAACAATTT GTCAAATGAT TCAGGAATAG GCCCTTCTAA TCTATTATGT 14877 .......... .......... .......... .......... .......... .......... 325 GCTAGAGAAA GATAAATTAA TTTATCTAGG CCCCCTAGAG TACTAGGAAT CTTACCAGAA 14817 .......... .......... .......... .......... .......... .......... 325 AAATAATTAT TTGACAGATC AATCAGTGTT GCACCCTTCA AGTTTCCGCT CTCTAGCGGA 14757 .......... .......... .......... .......... .......... .......... 325 ATTTCTCCAC TCAAATAATT GGATGAAATA TTGAACTCTA TGATGTTTTG AAGTCCCCCC 14697 .......... .......... .......... .......... .......... .......... 325 AATCTTGCAG GTAATCTAGA ATCCAGCTTG TTGTTATCTA GATAGAGTGT CCTCAAACTA 14637 .......... .......... .......... .......... .......... .......... 325 GTAACATTCC CTAAGCATGG TGGAACGGAA CTAGAAAATT GATTTTCTGA CAATTCTAAT 14577 .......... .......... .......... .......... .......... .......... 325 GCACCAAGAT ACTGTAAACT GCAGATAACA TCTGGTATGG CTCCTTCTAA CTTGTTGCTT 14517 .......... .......... .......... .......... .......... .......... 325 CCTAGGTAAA GTTCTTGAAG GTTCAGCATT CCTTGCACTG TTTTTGGAAT ATGACCTATC 14457 .......... .......... .......... .......... .......... .......... 325 AACTGATTGT TCGACAGACT CATCCTTGTC AATCCAGTAA GATTAGTAAT TTGTTTTGAA 14397 .......... .......... .......... .......... .......... .......... 325 ATGACACCCT TCAGTTTACA TTTAGATGCT TCAAAAATTT GCAAGGAGTT TGAGAAATTA 14337 .......... .......... .......... .......... .......... .......... 325 CCAACAGATG CAGGCAAAAC ACCATCCAAC GGATTACCAC CAAGCGTGAG TACTCTTAGA 14277 .......... .......... .......... .......... .......... .......... 325 TTCCTACAGT TTGTCAATGA TTCAAGGAAG CTCAATGTTG AATCGCTGAC AAAATTATTC 14217 .......... .......... .......... .......... .......... .......... 325 CCCCACAAGT TGAGAACCTC AAGGTATTCT AAGTTACCAA GTGATTTTGA AATTAGACCT 14157 .......... .......... .......... .......... .......... .......... 325 GTGAAACTGT TGCTGGAGAG GTCTAACATT GTGAGTCTTG AAGAATTAGA GATTGAATCA 14097 .......... .......... .......... .......... .......... .......... 325 GAGATAAAAC CACTCAGATT ATTTCCTCCA CAATAAAATA CTTGTAGGTC GGGCATTCCA 14037 .......... .......... .......... .......... .......... .......... 325 CGACCTAAAT CTGAAGGCAG AGTACCTGTA AGCTTGTTTT GTCCAAAATC TATTTTCTGC 13977 .......... .......... .......... .......... .......... .......... 325 AGTGTTGACA TGTTGAAAAT GCTGTCAGGG ATAGAGCCA 13938 || || || || .......... .......... ........GG AT-TAGTCA 335 hqPGS_C06HBa0054K13.1-16-_SGN-E243194+ (17695 17372) ******************************************************************************** EST sequence 25 +strand 344 n (File: SGN-E206496+) 1 AACTAAGTAG AGCTATGTAT ATTTTGTCTG CAGAAGCAAT GGCTTAATTT ACAACTATAG 61 GTGGCGTACG TATAATGCAT GGACCGAAAA ATAAGCAGGT GTAAACGCGG AAGCTAGCAA 121 TGCTAACATC GAAAGACCAC GAGTAAGAAG ACAACGAGAA ATATACCAAA AGACACAAAG 181 ATTTAACGTG GTTCGGTCAA TCGACCTATG TCCACAAAGG AGATGAGCAA TCCACTATAA 241 ATATGAGAGT ACAAAATACA GAGGGAAACA ATCTCAACCA ATTCACTCAG AATACATGGG 301 AGGTTCACAC AAGTAATAAC GTATCAAGCT TGTGACCCAC AAAT Predicted gene structure (within gDNA segment 19299 to 16639): Exon 1 17780 17519 ( 262 n); cDNA 82 344 ( 263 n); score: 0.929 MATCH C06HBa0054K13.1-16- SGN-E206496+ 0.929 262 0.762 C PGS_C06HBa0054K13.1-16-_SGN-E206496+ (17780 17519) Alignment (genomic DNA sequence = upper lines): GACCG-AAAA TCAGCAGGTG TAAACGCGGA AGCTAGCAAA GCAAACCTCA AAAGACCACG 17722 ||||| |||| | |||||||| |||||||||| ||||||||| || ||| || |||||||||| GACCGAAAAA TAAGCAGGTG TAAACGCGGA AGCTAGCAAT GCTAACATCG AAAGACCACG 141 AGTAAGAAGA CAACGAGAAA TATACCAAAA CACACAAAGA TTTAATGTGG TTCGGTCAAT 17662 |||||||||| |||||||||| |||||||||| ||||||||| ||||| |||| |||||||||| AGTAAGAAGA CAACGAGAAA TATACCAAAA GACACAAAGA TTTAACGTGG TTCGGTCAAT 201 CGACCTACGT CCACAAAGGA GATGAGCAAT CCACTATAAA TATGAGAGTA CAAAATACAG 17602 ||||||| || |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGACCTATGT CCACAAAGGA GATGAGCAAT CCACTATAAA TATGAGAGTA CAAAATACAG 261 AGAGAAACAA CCTCAACCAA TTCACTCGGA ATACATGGGA GGTTCACACA AGTGATAATG 17542 || ||||||| ||||||||| ||||||| || |||||||||| |||||||||| ||| |||| | AGGGAAACAA TCTCAACCAA TTCACTCAGA ATACATGGGA GGTTCACACA AGTAATAACG 321 TATCCAACTT GTGACCCATA AAT 17519 |||| | ||| |||||||| | ||| TATCAAGCTT GTGACCCACA AAT 344 hqPGS_C06HBa0054K13.1-16-_SGN-E206496+ (17780 17519) ******************************************************************************** EST sequence 29 +strand 349 n (File: SGN-E207598+) 1 GAAAAGAAAC TAAGTAGAGC TATGTATATT TTGTCTGCAG AAGCAATGGC TTAATTTACA 61 ACTATAGGTG GCGTACGTAT AATGCATGGA CCGAAAAATA AGCAGGTGTA AACGCGGAAG 121 CTAGCAATGC TAACATCGAA AGACCACGAG TTAGAAGACA ACGAGAAATA TACCAAAAGA 181 CACAAAGATT TAACGTGGGT CGGTCAATCG ACCTATGTCC ACAAAGGAGA TGAGCAATCC 241 ACTATTAATA TGAGAGTACA AAATACAGAG GGAAACAATC TCAACCAATT CACTCAGAAT 301 ACATGGGAGG GTCACACAAG TAATAACGTA TCAAGCTTGT GACCCACAA Predicted gene structure (within gDNA segment 20860 to 16425): Exon 1 17780 17521 ( 260 n); cDNA 89 349 ( 261 n); score: 0.913 MATCH C06HBa0054K13.1-16- SGN-E207598+ 0.913 260 0.745 C PGS_C06HBa0054K13.1-16-_SGN-E207598+ (17780 17521) Alignment (genomic DNA sequence = upper lines): GACCG-AAAA TCAGCAGGTG TAAACGCGGA AGCTAGCAAA GCAAACCTCA AAAGACCACG 17722 ||||| |||| | |||||||| |||||||||| ||||||||| || ||| || |||||||||| GACCGAAAAA TAAGCAGGTG TAAACGCGGA AGCTAGCAAT GCTAACATCG AAAGACCACG 148 AGTAAGAAGA CAACGAGAAA TATACCAAAA CACACAAAGA TTTAATGTGG TTCGGTCAAT 17662 ||| |||||| |||||||||| |||||||||| ||||||||| ||||| |||| ||||||||| AGTTAGAAGA CAACGAGAAA TATACCAAAA GACACAAAGA TTTAACGTGG GTCGGTCAAT 208 CGACCTACGT CCACAAAGGA GATGAGCAAT CCACTATAAA TATGAGAGTA CAAAATACAG 17602 ||||||| || |||||||||| |||||||||| ||||||| || |||||||||| |||||||||| CGACCTATGT CCACAAAGGA GATGAGCAAT CCACTATTAA TATGAGAGTA CAAAATACAG 268 AGAGAAACAA CCTCAACCAA TTCACTCGGA ATACATGGGA GGTTCACACA AGTGATAATG 17542 || ||||||| ||||||||| ||||||| || |||||||||| || ||||||| ||| |||| | AGGGAAACAA TCTCAACCAA TTCACTCAGA ATACATGGGA GGGTCACACA AGTAATAACG 328 TATCCAACTT GTGACCCATA A 17521 |||| | ||| |||||||| | | TATCAAGCTT GTGACCCACA A 349 hqPGS_C06HBa0054K13.1-16-_SGN-E207598+ (17780 17521) ******************************************************************************** EST sequence 19 +strand 667 n (File: SGN-E389613+) 1 TACATTACTG CAATCTCCAA ATCCAGCCAT AGATCCTTAG CATTGGACCA TTGGTAAAAG 61 TATTTAGTTA CAGATCCTTT TTTGCCTTTG GCAGCACTAA CTTATATACC TAATTAATTT 121 TGCCCCACAA TATGAAATGA GATAGCTTGC ATGCAACGCG TACCTGCTAC CTTCCACCAT 181 CACAAATCCA TAACCTGATA GTAATGAGTC AATGGAACCT TGACGGTGTT AGGACCAAAA 241 ATAAGCAGGT GTAAACGCGG AAGCTAGCAA AGCAAACCTC AAAAGACCAC GAGTAAGAAG 301 ACAACGAGAA ATATACCAAA AGATACAGAG ATTTAACGTG GTTCGGTCAA TTGACCTACG 361 TCCACAAAGG AGATGAGCAA TCCATTATAA ATATGAGAAT ACAAAATACA GAGAGAAACA 421 ACCTCAACCA AATTCACTCA GAATACATGA GAGATTCACA CAAGTGATAA CGTATCAAGA 481 AGCTTGTGAC TCATACCTCA ACGCATTATG TATGTGCAAA TCACAGGAGG AATGTACATT 541 CATGATCAGT TAAAAGTTAT AATAGAACAG GCAGAATAAA AGCAAAATAG AACATGATAA 601 TAATTTGTTA GAAACATTCT TGTACTCATC CAAATTAGTT GCAATGATTA CCTATTAGTA 661 ATATGAG Predicted gene structure (within gDNA segment 21999 to 14612): Exon 1 21287 21275 ( 13 n); cDNA 208 219 ( 12 n); score: 0.769 Intron 1 21274 21204 ( 71 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0) Exon 2 21203 21197 ( 7 n); cDNA 220 226 ( 7 n); score: 0.857 Intron 2 21196 17787 (3410 n); Pd: 0.986 (s: 0), Pa: 0.000 (s: 0.96) Exon 3 17786 17539 ( 248 n); cDNA 227 475 ( 249 n); score: 0.938 MATCH C06HBa0054K13.1-16- SGN-E389613+ 0.938 268 0.402 C PGS_C06HBa0054K13.1-16-_SGN-E389613+ (21287 21275,21203 21197,17786 17539) Alignment (genomic DNA sequence = upper lines): GTAAATGTGA GCCGTTTGTA TAACGGTAAG GGCATATATG AGCCACTTTT ATAACGAGGG 21228 || |||| || || GTCAATG-GA ACC....... .......... .......... .......... .......... 219 GTATATGAGC TCCAAATGAC AAAGTTGAGG GGTATATCAG ACCTTTTTCC CTTTTATATA 21168 |||| | | .......... .......... ....TTGACG G......... .......... .......... 226 TAACTATAAC TATGATATTA TTCTTTTATC TTTCAAAATT CAAAAACTTT TTTTTACTTG 21108 .......... .......... .......... .......... .......... .......... 226 AACAAGAAGT TAAAGGAAGA AAATAAAAGG TAGAATAAAA TAACATTTAA ATAGACTCAA 21048 .......... .......... .......... .......... .......... .......... 226 TTGCTTTCAA GAGTCTTCCA TTATAAAAAG GGAAGTGGAA AAAAACAAAT AATATCCCCT 20988 .......... .......... .......... .......... .......... .......... 226 TTTCTGCAAA AAAGCAAAGC AATCAGTAAA GCAAAAATAT TTACTTTCCA ATATACTATC 20928 .......... .......... .......... .......... .......... .......... 226 TTATTGTTGA GCCAAAGACC AAAGGCACAA AGCAAGGTCA AGGCAGATAA TCAAAGAATG 20868 .......... .......... .......... .......... .......... .......... 226 CTTTACAGTA TTATCTTAAA ATTGTGTGAC CTTATAATGG TTAGTTGCCA CTTGGTTATT 20808 .......... .......... .......... .......... .......... .......... 226 AACCTTTATT ATTTGGAATT CACTAGTTCA AATAAGACAA TTTTGTGTTG GTTATAAATA 20748 .......... .......... .......... .......... .......... .......... 226 GTTTATATTA CAAAAATTCG TTTCAAGTGT TCAAATTTTA GAAGAAAGAA ATTCACTAAT 20688 .......... .......... .......... .......... .......... .......... 226 CTCACCACAT TGATTACTAA TATTAGAGAA TGAATATATA TAATCTAAAT TCTCCCCTTC 20628 .......... .......... .......... .......... .......... .......... 226 CAAGTATATG AGATATTTAC CCGCGGCTGA GATGAGACCA CGACTAATAA GGTGGAGAAG 20568 .......... .......... .......... .......... .......... .......... 226 AAGATATCAG GCACAAAACT GAATAAATTA ATTTATATGG TGATAATATG TATCTTTAAT 20508 .......... .......... .......... .......... .......... .......... 226 CCTAACATTT AACGTAATAT TAATTTATTT AGCTTTGTCA CAGTGAAATT ATTTTTTCAT 20448 .......... .......... .......... .......... .......... .......... 226 GTGGAGAGCT ACATGACAAA AATTTTAAAT AGATAAGAGA GTGTATTAAC CACAACATTA 20388 .......... .......... .......... .......... .......... .......... 226 TAAATTAGTC AAGGTGTGTT TCACTAATCA TTAGGTGATT GTTTAGGTCG AAAACTCATA 20328 .......... .......... .......... .......... .......... .......... 226 CTTTCAATAG TTCAAATATA AAACTTAAAA ACTGATAAAG TTAAGATGTA AATAATTCTG 20268 .......... .......... .......... .......... .......... .......... 226 AGGGAAAATG CACAGGTACC CCCTCAACCT ATGTCCGAAA TTTCAGAGAC ACACTTATAC 20208 .......... .......... .......... .......... .......... .......... 226 AACACTAAGG TCCTATTACC CCCTCAACTT ATTTTATAAG TAATTTTCTA TCCCTTTTCG 20148 .......... .......... .......... .......... .......... .......... 226 ACCTATCGGA CATAGGTTGA GGGGTACTTG TGCATTTTTT CCCTGAACTT ATTTTATGAT 20088 .......... .......... .......... .......... .......... .......... 226 TGTTTCTCCT GTAAATATTT CATCACTTGG TTTCCTTCTT GTGAACCTCT CCATCATTAG 20028 .......... .......... .......... .......... .......... .......... 226 GATGCCAAAA CTATAAACAT CACAACTCGT GGATACTATT CCATCTTGTC CATACACTGT 19968 .......... .......... .......... .......... .......... .......... 226 AATCTTGGTA AAAAATGATC ATGAAAGCTT CCTAGTTAAA ATGAAATATG CCAAAACTGA 19908 .......... .......... .......... .......... .......... .......... 226 GAGTGTCAAT CCATTTATAG GGGAAAGAAT TGCTTAACTA TAGAAGTTTC TAATATACTG 19848 .......... .......... .......... .......... .......... .......... 226 GAGCAATATA TCCGATGGTT GCAGTTGTTC TTGTTTGAAC GAAAGCCTCC CCTACATCTA 19788 .......... .......... .......... .......... .......... .......... 226 ACAATTTTGC AATGCCAAAA TCACTAACTT GACCAACCAT TTCTTGATCT AGCAACATAT 19728 .......... .......... .......... .......... .......... .......... 226 TGCTTGGCTT CAAGTCACAA TGCACCACAG GCGTTGAATA GCCATTGTGG AGATAGTCCA 19668 .......... .......... .......... .......... .......... .......... 226 TTGCAGATGC AACATCTATC ATTATATCCA ATCTCTGCAA TAAGTTTAAG AACAAGTTGT 19608 .......... .......... .......... .......... .......... .......... 226 GAGAATATAA CCATTTATCA AGTGTCCCAT TGGGCATGTA TTCCAACACC AGGACCTTGA 19548 .......... .......... .......... .......... .......... .......... 226 AATCAAGGTT GCAGCAGCTT GTTATGACTT TGGTCAGATT TTTGTGGCGA AGTTCCGGAG 19488 .......... .......... .......... .......... .......... .......... 226 GGATTCGGCT TCTCTCCATT TTCCCCAAGT TTCTATTTGG ATTAATGACA CATGTCATAG 19428 .......... .......... .......... .......... .......... .......... 226 GTTAAAATAA ATGATTAAGA TTTAATTTTT CAAACTAAAC CTCTAAGCAT GATTTAGTTA 19368 .......... .......... .......... .......... .......... .......... 226 ATAAATATAT TATATATCAA GTATCAAAAT TATTATAATC TCACAATTTT AGCAACATAT 19308 .......... .......... .......... .......... .......... .......... 226 TATTTTGTCC ATATTATTTA TGTAAAAAAG TTTTCTTCCT ATTATTTTTT TTACTTAGGA 19248 .......... .......... .......... .......... .......... .......... 226 TCTTTTTTTT ATTTTTCTTT TATATAATAT TTTTTATTGT AATCTTTTGT TAAAGGTATA 19188 .......... .......... .......... .......... .......... .......... 226 TATTGGTCCG TGATTAATAA ATTACCAAGA GATAATCAAA CCATTTTGAC AAACTAATTT 19128 .......... .......... .......... .......... .......... .......... 226 TAATTTCATA ATAAGATTAA GAATGGGGTG ATACCAGTAC ATACGGTAGG TTATCTATAG 19068 .......... .......... .......... .......... .......... .......... 226 TTTCCATACT TCTATTCAGT TAATTATTCT TCTAATTAGA TAAAAAAAAA TATTATATAA 19008 .......... .......... .......... .......... .......... .......... 226 AAGGAAAAAG AAAAGATCCT AAGTAAAAAG AAATAATAGG AAGAAAACTT TTTTTACCTA 18948 .......... .......... .......... .......... .......... .......... 226 TATTTATGGA CAAAATATAG TCACAAGCAT GATATTATTC AACATTTTAA CACTCCCACT 18888 .......... .......... .......... .......... .......... .......... 226 CAATTACTAA AAACAGCGAG AGGAAGTTGT AATTTGGAGA GGTTGGGAAT GCGAAGTTTC 18828 .......... .......... .......... .......... .......... .......... 226 AGAAGGAAAA AGTTGACAAG GAATAATGTT CCTCCTTGAT TTCCTCTATG TTAAATACAA 18768 .......... .......... .......... .......... .......... .......... 226 CTTCTGGACT TTCCGTTTTT CTTGTCTTTC AGCTTAAATA TTATTTAAGT TGTTGTTTAT 18708 .......... .......... .......... .......... .......... .......... 226 TAGGAACAGA AAGTTCAGGT AGTTGTGCAT TATGATCATT TCAGAAAGAT TAAAATTCCT 18648 .......... .......... .......... .......... .......... .......... 226 CCTTTATTTC TGTACAATTC CTTGTCATTA TGAACTAAAC TAGTTTTGGT TAGCTTGGTT 18588 .......... .......... .......... .......... .......... .......... 226 TGTGTTTACG AATTTTAGGT TGGAGATAAT CATGTCATCA GGCCCTAAAC TCTAATAGTC 18528 .......... .......... .......... .......... .......... .......... 226 AGCACTCTAT GCAGCTAAGT GAATGAGGGA ACGTACATTT AGCAACCAAT AAAGACAATC 18468 .......... .......... .......... .......... .......... .......... 226 ACAGTCCTGT GCAACAATAT GCAGATATGT GATTGCAGGC AACAACTAGT TGCAGTCTGG 18408 .......... .......... .......... .......... .......... .......... 226 TTAGCAGGGA TATTCAAGTT GTTGATAATC TCGGAACATA GATTGTTGTC ATATGCGTTC 18348 .......... .......... .......... .......... .......... .......... 226 CAGCAGAGAA TTGATAAACA AAGTCACACA CATGTAGCAC AGTCATGCAT TGAAAATGGC 18288 .......... .......... .......... .......... .......... .......... 226 CATATTATGC AGACTTGGAA TGTAGGAGTA CAACTTACAT TTTGAGGATA TATACTAAAA 18228 .......... .......... .......... .......... .......... .......... 226 TCAACAAGTT TATAAAGTCA CAAACAACAG AGCATTTCAG ATGTCTATAT CTGTGAAAAC 18168 .......... .......... .......... .......... .......... .......... 226 AATTGATAGT TGAGTGGCTA TCAAAGTTAT TAACTCATCA ATGAACTCAC AGAAAAACTT 18108 .......... .......... .......... .......... .......... .......... 226 TCGATTAACT ATAATCGACT ATCTCTACTC TCCAAGAAGT CAAATCCACT CCTTGTCACA 18048 .......... .......... .......... .......... .......... .......... 226 AACCTCTCAA AGACTCAACT CTACAAGAAG CCAAATCCAC TCCTCCTACG ATAATGACTC 17988 .......... .......... .......... .......... .......... .......... 226 TAAGTACGAA TCAAAACACT CTACTCATGA CAAAAGAAAT TCTAACTATA GAACTTCTTA 17928 .......... .......... .......... .......... .......... .......... 226 ACTTATATTT CTATGATCTC TCAAATTGAT TGGCCTTTGT GTGTTAGCTC TCTTTTCTTT 17868 .......... .......... .......... .......... .......... .......... 226 CTCTCGTTTT TGAAATCTTT TCTCCCAGCT CTTTTTGAAA TCTGATTGCA TGTCTATCGT 17808 .......... .......... .......... .......... .......... .......... 226 CAACTTCGTA AACCATCATT TTGTTAGGAC CGAAAATCAG CAGGTGTAAA CGCGGAAGCT 17748 ||||||||| | ||||| || |||||||||| |||||||||| .......... .......... .TGTTAGGAC CAAAAATAAG CAGGTGTAAA CGCGGAAGCT 265 AGCAAAGCAA ACCTCAAAAG ACCACGAGTA AGAAGACAAC GAGAAATATA CCAAAACACA 17688 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||| | | AGCAAAGCAA ACCTCAAAAG ACCACGAGTA AGAAGACAAC GAGAAATATA CCAAAAGATA 325 CAAAGATTTA ATGTGGTTCG GTCAATCGAC CTACGTCCAC AAAGGAGATG AGCAATCCAC 17628 || ||||||| | |||||||| |||||| ||| |||||||||| |||||||||| ||||||||| CAGAGATTTA ACGTGGTTCG GTCAATTGAC CTACGTCCAC AAAGGAGATG AGCAATCCAT 385 TATAAATATG AGAGTACAAA ATACAGAGAG AAACAACCTC AACC-AATTC ACTCGGAATA 17569 |||||||||| ||| |||||| |||||||||| |||||||||| |||| ||||| |||| ||||| TATAAATATG AGAATACAAA ATACAGAGAG AAACAACCTC AACCAAATTC ACTCAGAATA 445 CATGGGAGGT TCACACAAGT GATAATGTAT 17539 |||| ||| | |||||||||| ||||| |||| CATGAGAGAT TCACACAAGT GATAACGTAT 475 hqPGS_C06HBa0054K13.1-16-_SGN-E389613+ (17786 17539) ******************************************************************************** EST sequence 18 +strand 302 n (File: SGN-E370622+) 1 TTTTTTTTTT TGATAACCTA GAAATATGCC TATGACCCGC CCCTTTGGAC TAATCACAAC 61 CTTCTAAACT CGGTGGATAA TGTTAGGACC GAAAATAAGC AGGTGTAAAC GCGGAAGCTA 121 GCAACGCAAA CCTCAAAATA CCACGAGTAA GACGACAACG AGAAATATAC CAAAAGACAC 181 AAAGATTTAA CGTGGTTCGG TCAATCGACC TACGTCCACA AAGGAGATGA GCAATCTACT 241 ATAAATATGA GAGTACAAAA TACAGAGAGA AACAACCTCA ACCAATTCAC TCGGAATACA 301 TG Predicted gene structure (within gDNA segment 19186 to 16955): Exon 1 17780 17565 ( 216 n); cDNA 87 302 ( 216 n); score: 0.968 PPA cDNA 11 1 MATCH C06HBa0054K13.1-16- SGN-E370622+ 0.968 216 0.715 C PGS_C06HBa0054K13.1-16-_SGN-E370622+ (17780 17565) Alignment (genomic DNA sequence = upper lines): GACCGAAAAT CAGCAGGTGT AAACGCGGAA GCTAGCAAAG CAAACCTCAA AAGACCACGA 17721 |||||||||| ||||||||| |||||||||| |||||||| | |||||||||| || ||||||| GACCGAAAAT AAGCAGGTGT AAACGCGGAA GCTAGCAACG CAAACCTCAA AATACCACGA 146 GTAAGAAGAC AACGAGAAAT ATACCAAAAC ACACAAAGAT TTAATGTGGT TCGGTCAATC 17661 |||||| ||| |||||||||| ||||||||| |||||||||| |||| ||||| |||||||||| GTAAGACGAC AACGAGAAAT ATACCAAAAG ACACAAAGAT TTAACGTGGT TCGGTCAATC 206 GACCTACGTC CACAAAGGAG ATGAGCAATC CACTATAAAT ATGAGAGTAC AAAATACAGA 17601 |||||||||| |||||||||| |||||||||| ||||||||| |||||||||| |||||||||| GACCTACGTC CACAAAGGAG ATGAGCAATC TACTATAAAT ATGAGAGTAC AAAATACAGA 266 GAGAAACAAC CTCAACCAAT TCACTCGGAA TACATG 17565 |||||||||| |||||||||| |||||||||| |||||| GAGAAACAAC CTCAACCAAT TCACTCGGAA TACATG 302 hqPGS_C06HBa0054K13.1-16-_SGN-E370622+ (17780 17565) ******************************************************************************** EST sequence 11 +strand 673 n (File: SGN-E395576+) 1 TTTCATGGCT GAATTTCTCT CTTGTGCCCA CAACGCCATC AGAATGCAGA CAATAATGGC 61 GAAGATGAAG GTGGTGAGGA GTGAAATTGC TGCGAAACAA GTGGTTGTGA TCGAGGAAAA 121 TGAGGAGATA CATTGGTATG CTTCTTGAAT TTCGTCCGGA GGACACAGCT ACTCAAATCC 181 AAATGCAAAG GATCTTCAAG AGTAAAGGAA TAAAACAAGA CCTTGGTTCA TTGTGAAAGT 241 TATGTGTGAT CCATAGCTGA AAGTTTGGCA TTTATCTCGG TTTTCCCTTC CTATTTGATT 301 TTTTTTCAAT AATCGCCGTT AGGTCAATTC TGCTATTTAA GTCAAGTTTC AACCAGCTTT 361 TGGGAATTCT GGAAGTCACG TGCTCATCAA AGTAAATTTT ATATACACTG ATGCAACGGT 421 CTATCTCCAC AATGGGTGTT CAAATCCAGT GGTGCATTGT GACTTGAAGC CAAGTGTCTT 481 GCTTGATCAA GACATGGTTG GCCATGTCAG TGATTTTGGC ATTGCAAAAT TGTTAGGTGC 541 AGGGGAGAGT TTTGTTCAAA CAAGGACAAT AGCAACCATT GGATAATTGC TCCAGAGTAT 601 GGACAAGATG GAATCGTATC CACAAGCTGC GATGTTTATA GTTTCGGTAT CCTGATTGAT 661 GGAAACTTTT ACA Predicted gene structure (within gDNA segment 18845 to 26844): Exon 1 19641 19849 ( 209 n); cDNA 396 594 ( 199 n); score: 0.823 Intron 1 19850 19970 ( 121 n); Pd: 0.947 (s: 0.84), Pa: 0.000 (s: 0.90) Exon 2 19971 20048 ( 78 n); cDNA 595 673 ( 79 n); score: 0.814 MATCH C06HBa0054K13.1-16+ SGN-E395576+ 0.821 287 0.426 C PGS_C06HBa0054K13.1-16+_SGN-E395576+ (19641 19849,19971 20048) Alignment (genomic DNA sequence = upper lines): ATATAATGAT AGATGTTGCA TCTGCAATGG ACTATCTCCA CAATGGCTAT TCAACGCCTG 19700 || | || || | | || | ||||| || ||||||||| |||||| | | |||| || | ATTTTAT-AT ACA--CTG-A --TGCAACGG TCTATCTCCA CAATGGGTGT TCAAATCCAG 449 TGGTGCATTG TGACTTGAAG CCAAGCAATA TGTTGCTAGA TCAAGAAATG GTTGGTCAAG 19760 |||||||||| |||||||||| ||||| | | ||||| || |||||| ||| ||||| || | TGGTGCATTG TGACTTGAAG CCAAG---TG TCTTGCTTGA TCAAGACATG GTTGGCCATG 506 TTAGTGATTT TGGCATTGCA AAATTGTTAG ATGTAGGGGA GGCTTTCGTT CAAACAAGAA 19820 | |||||||| |||||||||| |||||||||| || |||||| | ||| ||| |||||||| | TCAGTGATTT TGGCATTGCA AAATTGTTAG GTGCAGGGGA GAGTTTTGTT CAAACAAGGA 566 CAACTGCAAC CATCGGATAT ATTGCTCCAG TATATTAGAA ACTTCTATAG TTAAGCAATT 19880 ||| ||||| ||| ||||| ||||||||| CAATAGCAAC CATTGGATA- ATTGCTCCA. .......... .......... .......... 594 CTTTCCCCTA TAAATGGATT GACACTCTCA GTTTTGGCAT ATTTCATTTT AACTAGGAAG 19940 .......... .......... .......... .......... .......... .......... 594 CTTTCATGAT CATTTTTTAC CAAGATTACA GTGTATGGAC AAGATGGAAT AGTATCCACG 20000 | |||||||| |||||||||| |||||||| .......... .......... .......... GAGTATGGAC AAGATGGAAT CGTATCCACA 624 AGTTGTGATG TTTATAGTTT TGGCATCCT- AATGATGGAG AGGTTCACA 20048 || || |||| |||||||||| || ||||| | ||||||| | || ||| AGCTGCGATG TTTATAGTTT CGGTATCCTG ATTGATGGAA ACTTTTACA 673 hqPGS_C06HBa0054K13.1-16+_SGN-E395576+ (19641 19849,19971 20048) ******************************************************************************** EST sequence 21 -strand 858 n (File: SGN-E540411-) 1 TACATCAGTA TACGCGATTA ATCGCATGGT GAATACAGAA ACAAAGTTAG GGGATTTGTG 61 TTACCCTCTG GGGTCCAACT CATATTGGCA ACAATGTTAG TGCATCATGA TACTGAAATA 121 TGGGGAGATG ATGCAATGGA GTTTATGCCA GAGAGATTTA GTGAAGGAAT ATCAAAAGCA 181 ACAAAAGGAC AAGTTGTATT TTTTCCATTT AGTTGGGGTC CAAGAATATG TATTGGGCAA 241 AATTTTGCTA TGTTAGAGGC AAAAATGGCA ATGGTCATGA TTCTAAAACA TTATGCATTT 301 GAACTCTCTC CATCTTATGC TCATGCTCCT CACCCATTGT TGCTTCAACC TCAATATGGT 361 GCTCAATTGA TCATGCACAA GTTGTAGAAG TGGTTATCAC GTGTTGTCTT TTGAATCATG 421 TTATATCCTT TATTTATTGT TGGGATAATG TCCAAGTACC CCCTTAGCCT ATGTCCAAAA 481 TCTCAGAGAT ACACTTATAC CATACTAAGA TCTTATTACC CCCTGAACTT ATTTATTAAT 541 AATTTTTTAC CCCTTTTAGA CCTACGTGGC ACTATCTTGT GGGCCCAATG GTTGTTGACT 601 TTTTTTTTAA ACTAGTGCCA CGTAGGCTAA AAAGGGGTAG AAAATTACTT ATAAAATAAG 661 TTCAGGGGGG TAATAGGACC TTAGTATAGT ATAAGTGTGT CTCTGGAATT TCGGGCATAG 721 GTTGAGGGGG TACTTGTGCA TTATCCCTTT ATTGTTCTTT AATTATAGTT CAAGTGAAGT 781 CATATGTTGT TTTGTATAAG ACTGGAGAAT TTTATAATAA TAATATTAGT GTACTTTATG 841 TTTATGAGAA AAAAAAAA Predicted gene structure (within gDNA segment 13178 to 22102): Exon 1 16001 16005 ( 5 n); cDNA 601 605 ( 5 n); score: 0.800 Intron 1 16006 16635 ( 630 n); Pd: 0.900 (s: 0), Pa: 0.744 (s: 0) Exon 2 16636 16643 ( 8 n); cDNA 606 613 ( 8 n); score: 0.875 Intron 2 16644 17123 ( 480 n); Pd: 0.000 (s: 0), Pa: 0.778 (s: 0) Exon 3 17124 17130 ( 7 n); cDNA 614 620 ( 7 n); score: 0.571 Intron 3 17131 20139 (3009 n); Pd: 0.900 (s: 0), Pa: 0.000 (s: 0.83) Exon 4 20140 20267 ( 128 n); cDNA 621 748 ( 128 n); score: 0.887 PPA cDNA 847 858 MATCH C06HBa0054K13.1-16+ SGN-E540411- 0.887 148 0.172 C PGS_C06HBa0054K13.1-16+_SGN-E540411- (16001 16005,16636 16643,17124 17130,20140 20267) Alignment (genomic DNA sequence = upper lines): TTTTGGTATC CTGATGATGG AGACGTTCAC ACGAACAAGA CCAAGTGATG ACATATTTAC 16060 |||| TTTTT..... .......... .......... .......... .......... .......... 605 TGGAGACTTG AGCATACAAA GCTGGATTAG TGATTCCTTT CCGGGTGAAC TTCACAAGGT 16120 .......... .......... .......... .......... .......... .......... 605 GGTGGATTCT AATTTGGTAC AGCCCGGAGA TGAACAAATC GCTGCAAAGA TGCAATGTTT 16180 .......... .......... .......... .......... .......... .......... 605 GTCATCTGTC ATGGAATTAG CTTTGAAGTG CACTTTAGTG AGACCTGATG CAAGAATTAG 16240 .......... .......... .......... .......... .......... .......... 605 CATGAAGGAT GCTCTTTCAA CACTCAAAAA GATGAGGCTA CAGCTTGTTA GTAGTCGGCA 16300 .......... .......... .......... .......... .......... .......... 605 TTAGGTGGAA TCATTACCAA CCTTCTCTTG TATGTTATTT AGTTACCAGT TTTCTCTCTT 16360 .......... .......... .......... .......... .......... .......... 605 ATGTAATTCA ATTTCGCACG AGTGTATTTT ATCTTAGTTG TTGGCTTGAT TTATGGAAGT 16420 .......... .......... .......... .......... .......... .......... 605 TGAAAATGAG ATTTAAAATG CTCAACACAA GATTTTCTTT TCGTATTTAC ACAACTTTGA 16480 .......... .......... .......... .......... .......... .......... 605 GAATGCTTCC AATTATATCA CCACAACTGT AACAGTTTTA TCAAGTCCTC TCCTTCCAGC 16540 .......... .......... .......... .......... .......... .......... 605 CATCTAAGTG TAGTCTCCGG GAGTAGCTGC CTAAATTCCT TGTCGTCAAA CTTACATAAG 16600 .......... .......... .......... .......... .......... .......... 605 AATCAAAAGC AACTTGCCTC CAAAATTTGA TGCAGTTTAA ACCTTTTAGT GTTCAATGAG 16660 ||||| || .......... .......... .......... .....TTTAA ACT....... .......... 613 TTTGCTGTGC GCCCATTGGG TGAGGGAAGA GCTTTAACTC GTGCAGGTTC CTATTGCATC 16720 .......... .......... .......... .......... .......... .......... 613 TCCGCGGGCT TCTGGACCTG TTACTCGTCT ACTAATTTGG GATCTTAAGA TTGCAAGGGA 16780 .......... .......... .......... .......... .......... .......... 613 AAAGTGTGAA AATCTACTGG CTGAAAATGC ATACTGATTT AACTGCATCT AAAGAAGAAG 16840 .......... .......... .......... .......... .......... .......... 613 TTGGTTGATT GAAGGATCAG TTAGTACAGA AGAAGCTTGA TAGCAACGCT AGAGTGGACT 16900 .......... .......... .......... .......... .......... .......... 613 GGATCCTCCA GTTACTTGCT TCTTCATCCT GTCCTCCAAA CCCCAATCAT TCCTCTTCTT 16960 .......... .......... .......... .......... .......... .......... 613 GATCCCTGCT TTCTGGTCTA GTTTCTTATA CTTTTGGACT GAAGACATTG TTATGTTCTT 17020 .......... .......... .......... .......... .......... .......... 613 TTGAGTTTTG TGCTTAGACT GAATATTTTG TGAGCTTAAA ATGTTGGTGT ATCTCGGATC 17080 .......... .......... .......... .......... .......... .......... 613 CTCTGCTTCC TTCGTTCTTG CATGTTTTTG CATATGTTTA CAGATGGCTA ATATCATTAG 17140 | || | .......... .......... .......... .......... ...AGTGCCA .......... 620 ATTGGAGGTA TCTTGTTGTG TTCTACGCGA TGTTGCTCTT CCGGAGCTCT GCGTTTTCGT 17200 .......... .......... .......... .......... .......... .......... 620 TGGCTTGGTT TACTGTTTTA ACGCTTTTCT CTTCTTTTTG ATATGTATTG CTCTTGTGTA 17260 .......... .......... .......... .......... .......... .......... 620 CTGTGTGTAT TGACCTTATA CAGGAAATAG GAGTAGACGA TTTGTCATCA TCAAAAAAGA 17320 .......... .......... .......... .......... .......... .......... 620 GGGAAAATGT GTTGGGTTTT ATTTTCCCTA AATTTCTTAT CATAAATAGG TTTTCCTTTA 17380 .......... .......... .......... .......... .......... .......... 620 AGGGGAAGGT TTTGATTGAC TAATCATTTT CTTGTAGGAA AAGGTTTAGG ACTCTATAAA 17440 .......... .......... .......... .......... .......... .......... 620 TAGAGAAATG TTCCTTCTAA CTTAGTCAGC ATTCACAATG TAGTCTTAAG AGCTTTGAGA 17500 .......... .......... .......... .......... .......... .......... 620 GTTTTGGTTA GGGAGAGAAT TTATGGGTCA CAAGTTGGAT ACATTATCAC TTGTGTGAAC 17560 .......... .......... .......... .......... .......... .......... 620 CTCCCATGTA TTCCGAGTGA ATTGGTTGAG GTTGTTTCTC TCTGTATTTT GTACTCTCAT 17620 .......... .......... .......... .......... .......... .......... 620 ATTTATAGTG GATTGCTCAT CTCCTTTGTG GACGTAGGTC GATTGACCGA ACCACATTAA 17680 .......... .......... .......... .......... .......... .......... 620 ATCTTTGTGT GTTTTGGTAT ATTTCTCGTT GTCTTCTTAC TCGTGGTCTT TTGAGGTTTG 17740 .......... .......... .......... .......... .......... .......... 620 CTTTGCTAGC TTCCGCGTTT ACACCTGCTG ATTTTCGGTC CTAACAAAAT GATGGTTTAC 17800 .......... .......... .......... .......... .......... .......... 620 GAAGTTGACG ATAGACATGC AATCAGATTT CAAAAAGAGC TGGGAGAAAA GATTTCAAAA 17860 .......... .......... .......... .......... .......... .......... 620 ACGAGAGAAA GAAAAGAGAG CTAACACACA AAGGCCAATC AATTTGAGAG ATCATAGAAA 17920 .......... .......... .......... .......... .......... .......... 620 TATAAGTTAA GAAGTTCTAT AGTTAGAATT TCTTTTGTCA TGAGTAGAGT GTTTTGATTC 17980 .......... .......... .......... .......... .......... .......... 620 GTACTTAGAG TCATTATCGT AGGAGGAGTG GATTTGGCTT CTTGTAGAGT TGAGTCTTTG 18040 .......... .......... .......... .......... .......... .......... 620 AGAGGTTTGT GACAAGGAGT GGATTTGACT TCTTGGAGAG TAGAGATAGT CGATTATAGT 18100 .......... .......... .......... .......... .......... .......... 620 TAATCGAAAG TTTTTCTGTG AGTTCATTGA TGAGTTAATA ACTTTGATAG CCACTCAACT 18160 .......... .......... .......... .......... .......... .......... 620 ATCAATTGTT TTCACAGATA TAGACATCTG AAATGCTCTG TTGTTTGTGA CTTTATAAAC 18220 .......... .......... .......... .......... .......... .......... 620 TTGTTGATTT TAGTATATAT CCTCAAAATG TAAGTTGTAC TCCTACATTC CAAGTCTGCA 18280 .......... .......... .......... .......... .......... .......... 620 TAATATGGCC ATTTTCAATG CATGACTGTG CTACATGTGT GTGACTTTGT TTATCAATTC 18340 .......... .......... .......... .......... .......... .......... 620 TCTGCTGGAA CGCATATGAC AACAATCTAT GTTCCGAGAT TATCAACAAC TTGAATATCC 18400 .......... .......... .......... .......... .......... .......... 620 CTGCTAACCA GACTGCAACT AGTTGTTGCC TGCAATCACA TATCTGCATA TTGTTGCACA 18460 .......... .......... .......... .......... .......... .......... 620 GGACTGTGAT TGTCTTTATT GGTTGCTAAA TGTACGTTCC CTCATTCACT TAGCTGCATA 18520 .......... .......... .......... .......... .......... .......... 620 GAGTGCTGAC TATTAGAGTT TAGGGCCTGA TGACATGATT ATCTCCAACC TAAAATTCGT 18580 .......... .......... .......... .......... .......... .......... 620 AAACACAAAC CAAGCTAACC AAAACTAGTT TAGTTCATAA TGACAAGGAA TTGTACAGAA 18640 .......... .......... .......... .......... .......... .......... 620 ATAAAGGAGG AATTTTAATC TTTCTGAAAT GATCATAATG CACAACTACC TGAACTTTCT 18700 .......... .......... .......... .......... .......... .......... 620 GTTCCTAATA AACAACAACT TAAATAATAT TTAAGCTGAA AGACAAGAAA AACGGAAAGT 18760 .......... .......... .......... .......... .......... .......... 620 CCAGAAGTTG TATTTAACAT AGAGGAAATC AAGGAGGAAC ATTATTCCTT GTCAACTTTT 18820 .......... .......... .......... .......... .......... .......... 620 TCCTTCTGAA ACTTCGCATT CCCAACCTCT CCAAATTACA ACTTCCTCTC GCTGTTTTTA 18880 .......... .......... .......... .......... .......... .......... 620 GTAATTGAGT GGGAGTGTTA AAATGTTGAA TAATATCATG CTTGTGACTA TATTTTGTCC 18940 .......... .......... .......... .......... .......... .......... 620 ATAAATATAG GTAAAAAAAG TTTTCTTCCT ATTATTTCTT TTTACTTAGG ATCTTTTCTT 19000 .......... .......... .......... .......... .......... .......... 620 TTTCCTTTTA TATAATATTT TTTTTTATCT AATTAGAAGA ATAATTAACT GAATAGAAGT 19060 .......... .......... .......... .......... .......... .......... 620 ATGGAAACTA TAGATAACCT ACCGTATGTA CTGGTATCAC CCCATTCTTA ATCTTATTAT 19120 .......... .......... .......... .......... .......... .......... 620 GAAATTAAAA TTAGTTTGTC AAAATGGTTT GATTATCTCT TGGTAATTTA TTAATCACGG 19180 .......... .......... .......... .......... .......... .......... 620 ACCAATATAT ACCTTTAACA AAAGATTACA ATAAAAAATA TTATATAAAA GAAAAATAAA 19240 .......... .......... .......... .......... .......... .......... 620 AAAAAGATCC TAAGTAAAAA AAATAATAGG AAGAAAACTT TTTTACATAA ATAATATGGA 19300 .......... .......... .......... .......... .......... .......... 620 CAAAATAATA TGTTGCTAAA ATTGTGAGAT TATAATAATT TTGATACTTG ATATATAATA 19360 .......... .......... .......... .......... .......... .......... 620 TATTTATTAA CTAAATCATG CTTAGAGGTT TAGTTTGAAA AATTAAATCT TAATCATTTA 19420 .......... .......... .......... .......... .......... .......... 620 TTTTAACCTA TGACATGTGT CATTAATCCA AATAGAAACT TGGGGAAAAT GGAGAGAAGC 19480 .......... .......... .......... .......... .......... .......... 620 CGAATCCCTC CGGAACTTCG CCACAAAAAT CTGACCAAAG TCATAACAAG CTGCTGCAAC 19540 .......... .......... .......... .......... .......... .......... 620 CTTGATTTCA AGGTCCTGGT GTTGGAATAC ATGCCCAATG GGACACTTGA TAAATGGTTA 19600 .......... .......... .......... .......... .......... .......... 620 TATTCTCACA ACTTGTTCTT AAACTTATTG CAGAGATTGG ATATAATGAT AGATGTTGCA 19660 .......... .......... .......... .......... .......... .......... 620 TCTGCAATGG ACTATCTCCA CAATGGCTAT TCAACGCCTG TGGTGCATTG TGACTTGAAG 19720 .......... .......... .......... .......... .......... .......... 620 CCAAGCAATA TGTTGCTAGA TCAAGAAATG GTTGGTCAAG TTAGTGATTT TGGCATTGCA 19780 .......... .......... .......... .......... .......... .......... 620 AAATTGTTAG ATGTAGGGGA GGCTTTCGTT CAAACAAGAA CAACTGCAAC CATCGGATAT 19840 .......... .......... .......... .......... .......... .......... 620 ATTGCTCCAG TATATTAGAA ACTTCTATAG TTAAGCAATT CTTTCCCCTA TAAATGGATT 19900 .......... .......... .......... .......... .......... .......... 620 GACACTCTCA GTTTTGGCAT ATTTCATTTT AACTAGGAAG CTTTCATGAT CATTTTTTAC 19960 .......... .......... .......... .......... .......... .......... 620 CAAGATTACA GTGTATGGAC AAGATGGAAT AGTATCCACG AGTTGTGATG TTTATAGTTT 20020 .......... .......... .......... .......... .......... .......... 620 TGGCATCCTA ATGATGGAGA GGTTCACAAG AAGGAAACCA AGTGATGAAA TATTTACAGG 20080 .......... .......... .......... .......... .......... .......... 620 AGAAACAATC ATAAAATAAG TTCAGGGAAA AAATGCACAA GTACCCCTCA ACCTATGTCC 20140 | .......... .......... .......... .......... .......... .........C 621 GATAGGTCGA AAAGGGATAG AAAATTACTT ATAAAATAAG TTGAGGG-GG TAATAGGACC 20199 | |||| | |||||| ||| |||||||||| |||||||||| || |||| || |||||||||| G-TAGGCTAA AAAGGGGTAG AAAATTACTT ATAAAATAAG TTCAGGGGGG TAATAGGACC 680 TTAGTGTTGT ATAAGTGTGT CTCTGAAATT TCGGACATAG GTTGAGGGGG TACCTGTGCA 20259 ||||| | || |||||||||| ||||| |||| |||| ||||| |||||||||| ||| |||||| TTAGTATAGT ATAAGTGTGT CTCTGGAATT TCGGGCATAG GTTGAGGGGG TACTTGTGCA 740 TTTTCCCT 20267 || ||||| TTATCCCT 748 hqPGS_C06HBa0054K13.1-16+_SGN-E540411- (20140 20267) ******************************************************************************** EST sequence 26 -strand 460 n (File: SGN-E243215-) 1 GTATGAAATT TTAAAAAATA GGGAAAAGGG TCTGATATAC CTCTCAACTT TGTCATTTAG 61 AGCTGATATA TCCCTCGTAA TAAAAGTGGT TCATATATGC CCTTATCGTT ATACAAACGG 121 CTCACATATA CCCCTGCCGT TAGAAAATGG CTCACATATA CCCTTCATTT AACGAAAGTT 181 AAAAAATTAG TTTTAAATTT ATATTTGTTA CTTCTAATTT TTTTTTAAAA AAAATATTTA 241 GGGATATATA TGATTCTTCT ATCAAAGTTC AAGGTATATT TTAATTTTTT CATACAAAAA 301 TTATTTTTTG ACTTCTTTTA TTATAATAAT TTGAGTTTCT TATTCTTATT TTGTTTTTTT 361 CTTTCATTCC TTAGTTTAAA TAAAAAAAAT TCAAATATTT TTTTTGTGTG TATTGTAATT 421 TAATTTCGTA TTCGAAGAAA AAATTGGTCA TCTACAATAA Predicted gene structure (within gDNA segment 18369 to 22217): Exon 1 21165 21617 ( 453 n); cDNA 9 460 ( 452 n); score: 0.919 MATCH C06HBa0054K13.1-16+ SGN-E243215- 0.919 453 0.985 C PGS_C06HBa0054K13.1-16+_SGN-E243215- (21165 21617) Alignment (genomic DNA sequence = upper lines): TTATATATAA AAGGGAAAAA GGTCTGATAT ACCCCTCAAC TTTGTCATTT GGAGCTCATA 21224 || || | || |||||||| |||||||||| ||| |||||| |||||||||| ||||| ||| TTTTAAAAAA TAGGGAAAAG GGTCTGATAT ACCTCTCAAC TTTGTCATTT AGAGCTGATA 68 TACCCCTCGT TATAAAAGTG GCTCATATAT GCCCTTACCG TTATACAAAC GGCTCACATT 21284 || ||||||| ||||||||| | |||||||| ||||||| || |||||||||| ||||||||| TATCCCTCGT AATAAAAGTG GTTCATATAT GCCCTTATCG TTATACAAAC GGCTCACATA 128 TACCCCTGCT GTTATAAAAT GACTCACATA TACCCTTCAT TTAACGGAAG TTAAAAAATT 21344 ||||||||| |||| ||||| | |||||||| |||||||||| |||||| ||| |||||||||| TACCCCTGCC GTTAGAAAAT GGCTCACATA TACCCTTCAT TTAACGAAAG TTAAAAAATT 188 TATTTTAAAT TTATATTTAT TACTTTTAAT TTTTTTTAAA AAAAATTATT TAGAGATATA 21404 |||||||| |||||||| | ||||| |||| ||||||| || ||||| |||| ||| |||||| AGTTTTAAAT TTATATTTGT TACTTCTAAT TTTTTTTTAA AAAAAATATT TAGGGATATA 248 TATGATTCTT CTATCAAAGT TCAATGTATA TTTTAATTTT TTTCATACAT AAATTATTTT 21464 |||||||||| |||||||||| |||| ||||| |||||| ||| ||||||||| |||||||||| TATGATTCTT CTATCAAAGT TCAAGGTATA TTTTAA-TTT TTTCATACAA AAATTATTTT 307 TTGACTTCAT TTATTATAAT TATTTGAGTT TCTTATTCTT ATTTTGTTTT TTTCTTTCAT 21524 |||||||| | |||||||||| ||||||||| |||||||||| |||||||||| |||||||||| TTGACTTCTT TTATTATAAT AATTTGAGTT TCTTATTCTT ATTTTGTTTT TTTCTTTCAT 367 TCCTTAGTTT AAAT-AAAAA AATTAAACTA TTTTTTTACT GTGTATTGTA ATTTAATTTC 21583 |||||||||| |||| ||||| |||| || || ||||||| | |||||||||| |||||||||| TCCTTAGTTT AAATAAAAAA AATTCAAATA TTTTTTTTGT GTGTATTGTA ATTTAATTTC 427 GTATTCGAAG AAAAAATTTG GTCATCTACA ATAA 21617 |||||||||| |||||| ||| |||||||||| |||| GTATTCGAAG AAAAAA-TTG GTCATCTACA ATAA 460 hqPGS_C06HBa0054K13.1-16+_SGN-E243215- (21165 21617) ******************************************************************************** EST sequence 1 +strand 701 n (File: SGN-E578389+) 1 GAAAAACATA TATCTTATTG CTATACACTT ATAATTATGC AATATACATA CATTTTAATT 61 CGGTTCAATT ATATGCAAAG CAAATTTTAT AATAATATTG CAGCGAAATA GGCAGCGAAT 121 TATACAATTG TAGTTAAATA GGATAGCGAA TTATACAATT GCAGCGAAAT AGGCCAGCGA 181 ATTATACAAT TTAGGTCAGC GAATTATACA ATTTTATGTT TGCTATGGAG CGCAATTATG 241 CAAACTTTGT TATAGCATAC AAATATGAAT TTTTTGTTTG TTATATGTGA AAGTTGCCCA 301 TTAATTAAAG AGTCAATAAA ATAGCGGTCT AATCAAGTCC TAAGCAGCCC AAGGTTTGAC 361 CCGTCAACCC AAAAATGAAT AATATTATGG GAAAAGGGTA TGATATACCC CTCAACTTTG 421 TCATTTGAAA CTGATATACC CCTCGTTATG AAAGTGGCTC ATATATACCC TTACCGTTAT 481 ACAAATGGTT CACATATACC TCTGCCGTTA CAAAATGAGC TCATATATAC CCTTCATTTA 541 ACGAAAGTGA AAAAATTACT TTTAAATTTA TAATTTTACT TTAATTTTAA AAAAAAATAT 601 ATTTAGGGGC ATATATGATT CTTTTTTCAA AGTTCAAGGT ATATTTCAAA TTTTTTTAAT 661 ACATAAATTA TTTTTTTGAC TTATTTATTA TAATTATTTG A Predicted gene structure (within gDNA segment 15989 to 22101): Exon 1 17124 17130 ( 7 n); cDNA 375 381 ( 7 n); score: 0.714 Intron 1 17131 21168 (4038 n); Pd: 0.900 (s: 0), Pa: 0.000 (s: 0.86) Exon 2 21169 21491 ( 323 n); cDNA 382 701 ( 320 n); score: 0.856 MATCH C06HBa0054K13.1-16+ SGN-E578389+ 0.856 330 0.471 C PGS_C06HBa0054K13.1-16+_SGN-E578389+ (17124 17130,21169 21491) Alignment (genomic DNA sequence = upper lines): ATGGCTAATA TCATTAGATT GGAGGTATCT TGTTGTGTTC TACGCGATGT TGCTCTTCCG 17183 ||| || ATGAATA... .......... .......... .......... .......... .......... 381 GAGCTCTGCG TTTTCGTTGG CTTGGTTTAC TGTTTTAACG CTTTTCTCTT CTTTTTGATA 17243 .......... .......... .......... .......... .......... .......... 381 TGTATTGCTC TTGTGTACTG TGTGTATTGA CCTTATACAG GAAATAGGAG TAGACGATTT 17303 .......... .......... .......... .......... .......... .......... 381 GTCATCATCA AAAAAGAGGG AAAATGTGTT GGGTTTTATT TTCCCTAAAT TTCTTATCAT 17363 .......... .......... .......... .......... .......... .......... 381 AAATAGGTTT TCCTTTAAGG GGAAGGTTTT GATTGACTAA TCATTTTCTT GTAGGAAAAG 17423 .......... .......... .......... .......... .......... .......... 381 GTTTAGGACT CTATAAATAG AGAAATGTTC CTTCTAACTT AGTCAGCATT CACAATGTAG 17483 .......... .......... .......... .......... .......... .......... 381 TCTTAAGAGC TTTGAGAGTT TTGGTTAGGG AGAGAATTTA TGGGTCACAA GTTGGATACA 17543 .......... .......... .......... .......... .......... .......... 381 TTATCACTTG TGTGAACCTC CCATGTATTC CGAGTGAATT GGTTGAGGTT GTTTCTCTCT 17603 .......... .......... .......... .......... .......... .......... 381 GTATTTTGTA CTCTCATATT TATAGTGGAT TGCTCATCTC CTTTGTGGAC GTAGGTCGAT 17663 .......... .......... .......... .......... .......... .......... 381 TGACCGAACC ACATTAAATC TTTGTGTGTT TTGGTATATT TCTCGTTGTC TTCTTACTCG 17723 .......... .......... .......... .......... .......... .......... 381 TGGTCTTTTG AGGTTTGCTT TGCTAGCTTC CGCGTTTACA CCTGCTGATT TTCGGTCCTA 17783 .......... .......... .......... .......... .......... .......... 381 ACAAAATGAT GGTTTACGAA GTTGACGATA GACATGCAAT CAGATTTCAA AAAGAGCTGG 17843 .......... .......... .......... .......... .......... .......... 381 GAGAAAAGAT TTCAAAAACG AGAGAAAGAA AAGAGAGCTA ACACACAAAG GCCAATCAAT 17903 .......... .......... .......... .......... .......... .......... 381 TTGAGAGATC ATAGAAATAT AAGTTAAGAA GTTCTATAGT TAGAATTTCT TTTGTCATGA 17963 .......... .......... .......... .......... .......... .......... 381 GTAGAGTGTT TTGATTCGTA CTTAGAGTCA TTATCGTAGG AGGAGTGGAT TTGGCTTCTT 18023 .......... .......... .......... .......... .......... .......... 381 GTAGAGTTGA GTCTTTGAGA GGTTTGTGAC AAGGAGTGGA TTTGACTTCT TGGAGAGTAG 18083 .......... .......... .......... .......... .......... .......... 381 AGATAGTCGA TTATAGTTAA TCGAAAGTTT TTCTGTGAGT TCATTGATGA GTTAATAACT 18143 .......... .......... .......... .......... .......... .......... 381 TTGATAGCCA CTCAACTATC AATTGTTTTC ACAGATATAG ACATCTGAAA TGCTCTGTTG 18203 .......... .......... .......... .......... .......... .......... 381 TTTGTGACTT TATAAACTTG TTGATTTTAG TATATATCCT CAAAATGTAA GTTGTACTCC 18263 .......... .......... .......... .......... .......... .......... 381 TACATTCCAA GTCTGCATAA TATGGCCATT TTCAATGCAT GACTGTGCTA CATGTGTGTG 18323 .......... .......... .......... .......... .......... .......... 381 ACTTTGTTTA TCAATTCTCT GCTGGAACGC ATATGACAAC AATCTATGTT CCGAGATTAT 18383 .......... .......... .......... .......... .......... .......... 381 CAACAACTTG AATATCCCTG CTAACCAGAC TGCAACTAGT TGTTGCCTGC AATCACATAT 18443 .......... .......... .......... .......... .......... .......... 381 CTGCATATTG TTGCACAGGA CTGTGATTGT CTTTATTGGT TGCTAAATGT ACGTTCCCTC 18503 .......... .......... .......... .......... .......... .......... 381 ATTCACTTAG CTGCATAGAG TGCTGACTAT TAGAGTTTAG GGCCTGATGA CATGATTATC 18563 .......... .......... .......... .......... .......... .......... 381 TCCAACCTAA AATTCGTAAA CACAAACCAA GCTAACCAAA ACTAGTTTAG TTCATAATGA 18623 .......... .......... .......... .......... .......... .......... 381 CAAGGAATTG TACAGAAATA AAGGAGGAAT TTTAATCTTT CTGAAATGAT CATAATGCAC 18683 .......... .......... .......... .......... .......... .......... 381 AACTACCTGA ACTTTCTGTT CCTAATAAAC AACAACTTAA ATAATATTTA AGCTGAAAGA 18743 .......... .......... .......... .......... .......... .......... 381 CAAGAAAAAC GGAAAGTCCA GAAGTTGTAT TTAACATAGA GGAAATCAAG GAGGAACATT 18803 .......... .......... .......... .......... .......... .......... 381 ATTCCTTGTC AACTTTTTCC TTCTGAAACT TCGCATTCCC AACCTCTCCA AATTACAACT 18863 .......... .......... .......... .......... .......... .......... 381 TCCTCTCGCT GTTTTTAGTA ATTGAGTGGG AGTGTTAAAA TGTTGAATAA TATCATGCTT 18923 .......... .......... .......... .......... .......... .......... 381 GTGACTATAT TTTGTCCATA AATATAGGTA AAAAAAGTTT TCTTCCTATT ATTTCTTTTT 18983 .......... .......... .......... .......... .......... .......... 381 ACTTAGGATC TTTTCTTTTT CCTTTTATAT AATATTTTTT TTTATCTAAT TAGAAGAATA 19043 .......... .......... .......... .......... .......... .......... 381 ATTAACTGAA TAGAAGTATG GAAACTATAG ATAACCTACC GTATGTACTG GTATCACCCC 19103 .......... .......... .......... .......... .......... .......... 381 ATTCTTAATC TTATTATGAA ATTAAAATTA GTTTGTCAAA ATGGTTTGAT TATCTCTTGG 19163 .......... .......... .......... .......... .......... .......... 381 TAATTTATTA ATCACGGACC AATATATACC TTTAACAAAA GATTACAATA AAAAATATTA 19223 .......... .......... .......... .......... .......... .......... 381 TATAAAAGAA AAATAAAAAA AAGATCCTAA GTAAAAAAAA TAATAGGAAG AAAACTTTTT 19283 .......... .......... .......... .......... .......... .......... 381 TACATAAATA ATATGGACAA AATAATATGT TGCTAAAATT GTGAGATTAT AATAATTTTG 19343 .......... .......... .......... .......... .......... .......... 381 ATACTTGATA TATAATATAT TTATTAACTA AATCATGCTT AGAGGTTTAG TTTGAAAAAT 19403 .......... .......... .......... .......... .......... .......... 381 TAAATCTTAA TCATTTATTT TAACCTATGA CATGTGTCAT TAATCCAAAT AGAAACTTGG 19463 .......... .......... .......... .......... .......... .......... 381 GGAAAATGGA GAGAAGCCGA ATCCCTCCGG AACTTCGCCA CAAAAATCTG ACCAAAGTCA 19523 .......... .......... .......... .......... .......... .......... 381 TAACAAGCTG CTGCAACCTT GATTTCAAGG TCCTGGTGTT GGAATACATG CCCAATGGGA 19583 .......... .......... .......... .......... .......... .......... 381 CACTTGATAA ATGGTTATAT TCTCACAACT TGTTCTTAAA CTTATTGCAG AGATTGGATA 19643 .......... .......... .......... .......... .......... .......... 381 TAATGATAGA TGTTGCATCT GCAATGGACT ATCTCCACAA TGGCTATTCA ACGCCTGTGG 19703 .......... .......... .......... .......... .......... .......... 381 TGCATTGTGA CTTGAAGCCA AGCAATATGT TGCTAGATCA AGAAATGGTT GGTCAAGTTA 19763 .......... .......... .......... .......... .......... .......... 381 GTGATTTTGG CATTGCAAAA TTGTTAGATG TAGGGGAGGC TTTCGTTCAA ACAAGAACAA 19823 .......... .......... .......... .......... .......... .......... 381 CTGCAACCAT CGGATATATT GCTCCAGTAT ATTAGAAACT TCTATAGTTA AGCAATTCTT 19883 .......... .......... .......... .......... .......... .......... 381 TCCCCTATAA ATGGATTGAC ACTCTCAGTT TTGGCATATT TCATTTTAAC TAGGAAGCTT 19943 .......... .......... .......... .......... .......... .......... 381 TCATGATCAT TTTTTACCAA GATTACAGTG TATGGACAAG ATGGAATAGT ATCCACGAGT 20003 .......... .......... .......... .......... .......... .......... 381 TGTGATGTTT ATAGTTTTGG CATCCTAATG ATGGAGAGGT TCACAAGAAG GAAACCAAGT 20063 .......... .......... .......... .......... .......... .......... 381 GATGAAATAT TTACAGGAGA AACAATCATA AAATAAGTTC AGGGAAAAAA TGCACAAGTA 20123 .......... .......... .......... .......... .......... .......... 381 CCCCTCAACC TATGTCCGAT AGGTCGAAAA GGGATAGAAA ATTACTTATA AAATAAGTTG 20183 .......... .......... .......... .......... .......... .......... 381 AGGGGGTAAT AGGACCTTAG TGTTGTATAA GTGTGTCTCT GAAATTTCGG ACATAGGTTG 20243 .......... .......... .......... .......... .......... .......... 381 AGGGGGTACC TGTGCATTTT CCCTCAGAAT TATTTACATC TTAACTTTAT CAGTTTTTAA 20303 .......... .......... .......... .......... .......... .......... 381 GTTTTATATT TGAACTATTG AAAGTATGAG TTTTCGACCT AAACAATCAC CTAATGATTA 20363 .......... .......... .......... .......... .......... .......... 381 GTGAAACACA CCTTGACTAA TTTATAATGT TGTGGTTAAT ACACTCTCTT ATCTATTTAA 20423 .......... .......... .......... .......... .......... .......... 381 AATTTTTGTC ATGTAGCTCT CCACATGAAA AAATAATTTC ACTGTGACAA AGCTAAATAA 20483 .......... .......... .......... .......... .......... .......... 381 ATTAATATTA CGTTAAATGT TAGGATTAAA GATACATATT ATCACCATAT AAATTAATTT 20543 .......... .......... .......... .......... .......... .......... 381 ATTCAGTTTT GTGCCTGATA TCTTCTTCTC CACCTTATTA GTCGTGGTCT CATCTCAGCC 20603 .......... .......... .......... .......... .......... .......... 381 GCGGGTAAAT ATCTCATATA CTTGGAAGGG GAGAATTTAG ATTATATATA TTCATTCTCT 20663 .......... .......... .......... .......... .......... .......... 381 AATATTAGTA ATCAATGTGG TGAGATTAGT GAATTTCTTT CTTCTAAAAT TTGAACACTT 20723 .......... .......... .......... .......... .......... .......... 381 GAAACGAATT TTTGTAATAT AAACTATTTA TAACCAACAC AAAATTGTCT TATTTGAACT 20783 .......... .......... .......... .......... .......... .......... 381 AGTGAATTCC AAATAATAAA GGTTAATAAC CAAGTGGCAA CTAACCATTA TAAGGTCACA 20843 .......... .......... .......... .......... .......... .......... 381 CAATTTTAAG ATAATACTGT AAAGCATTCT TTGATTATCT GCCTTGACCT TGCTTTGTGC 20903 .......... .......... .......... .......... .......... .......... 381 CTTTGGTCTT TGGCTCAACA ATAAGATAGT ATATTGGAAA GTAAATATTT TTGCTTTACT 20963 .......... .......... .......... .......... .......... .......... 381 GATTGCTTTG CTTTTTTGCA GAAAAGGGGA TATTATTTGT TTTTTTCCAC TTCCCTTTTT 21023 .......... .......... .......... .......... .......... .......... 381 ATAATGGAAG ACTCTTGAAA GCAATTGAGT CTATTTAAAT GTTATTTTAT TCTACCTTTT 21083 .......... .......... .......... .......... .......... .......... 381 ATTTTCTTCC TTTAACTTCT TGTTCAAGTA AAAAAAAGTT TTTGAATTTT GAAAGATAAA 21143 .......... .......... .......... .......... .......... .......... 381 AGAATAATAT CATAGTTATA GTTATATATA AAAGGGAAAA AGGTCTGATA TACCCCTCAA 21203 |||| | ||||||| ||| ||||| |||||||||| .......... .......... .....ATAT- TATGGGAAAA GGGTATGATA TACCCCTCAA 415 CTTTGTCATT TGGAGCTCAT ATACCCCTCG TTATAAAAGT GGCTCATATA TGCCCTTACC 21263 |||||||||| || | || || |||||||||| |||| ||||| |||||||||| | |||||||| CTTTGTCATT TGAAACTGAT ATACCCCTCG TTATGAAAGT GGCTCATATA TACCCTTACC 475 GTTATACAAA CGGCTCACAT TTACCCCTGC TGTTATAAAA TGA-CTCACA TATACCCTTC 21322 |||||||||| || |||||| |||| |||| |||| |||| ||| |||| | |||||||||| GTTATACAAA TGGTTCACAT ATACCTCTGC CGTTACAAAA TGAGCTCATA TATACCCTTC 535 ATTTAACGGA AGTTAAAAAA TTTATTTTAA ATTTATATTT ATTACTTTTA ATTTTTTTTA 21382 |||||||| | ||| |||||| || |||||| ||||||| || |||| |||| | |||| | ATTTAACGAA AGTGAAAAAA TTACTTTTAA ATTTATAATT -TTAC-TTTA A--TTTTAAA 591 AAAAAAATTA TTTAGAGATA TATATGATTC TTCTATCAAA GTTCAATGTA TATTT-TAAT 21441 |||||| || ||||| | | |||||||||| || | ||||| |||||| ||| ||||| ||| AAAAAATATA TTTAGGGGCA TATATGATTC TTTTTTCAAA GTTCAAGGTA TATTTCAAAT 651 TTTTTTCATA CATAAATTA- TTTTTTGACT TCATTTATTA TAATTATTTG A 21491 |||||| ||| ||||||||| |||||||||| | |||||||| |||||||||| | TTTTTTAATA CATAAATTAT TTTTTTGACT T-ATTTATTA TAATTATTTG A 701 hqPGS_C06HBa0054K13.1-16+_SGN-E578389+ (21169 21491) ******************************************************************************** EST sequence 28 -strand 624 n (File: SGN-E542827-) 1 CCAAAACCAG CAACCTAAAG TTCAAAATTC CAGGAAATTT CAATGTTTTC ATCCAATATA 61 TGGTAGAAAT TTCTAACAAT TTTATAACTT TTCGATGATT TGGTTCACTG CTAGTGTTTG 121 AACTTTGTAT TTGATTGAAG ATTTTGTGTT GTTTACAAAT ATCCTCTTTT AAGTTTATCT 181 ATTTTACGGA AAAAGTTTGA TATATTTCTC AATTTTGTCA TTTGCAGCAC TGTCGTTACA 241 AAATGGCTAA TATATATTAA AAAATTAATT TTAAATTTAT ATTTATTACT TTTGATTGTT 301 TTTAAAAAAA TTATTTAAAG GTATATATTA TTCTTCTATC AAAGTTCGAG GTTATATTTA 361 ATTTTTTTTA TACATAAATT ATTGTTTGAC TTCTTTTATT ATAATTATTT GAGTTTGTTA 421 TTCTAATTTT TTTTCTTTCA TTCCTTAGTT TAAAGAGAAA AAAAACTAAA CTATTTTTTT 481 TGTGTGTATT GTAATTTAAT TTGGTATTCA AAGAAAAATT TTGGTCATCT ACAATAAGTT 541 TTACAAGAAT ATTAGTGAAA TATAAATAAA TTTGATTATC AAAATAATAA TTATAAATTA 601 GTCATTAACC AAAAAAAAAG AAAA Predicted gene structure (within gDNA segment 15715 to 22466): Exon 1 16636 16645 ( 10 n); cDNA 117 126 ( 10 n); score: 0.800 Intron 1 16646 17283 ( 638 n); Pd: 0.000 (s: 0), Pa: 1.000 (s: 0) Exon 2 17284 17303 ( 20 n); cDNA 127 144 ( 18 n); score: 0.650 Intron 2 17304 17628 ( 325 n); Pd: 0.000 (s: 0), Pa: 0.915 (s: 0) Exon 3 17629 17638 ( 10 n); cDNA 145 154 ( 10 n); score: 0.600 Intron 3 17639 21145 (3507 n); Pd: 0.900 (s: 0), Pa: 0.000 (s: 0.66) Exon 4 21146 21254 ( 109 n); cDNA 155 255 ( 101 n); score: 0.693 Intron 4 21255 21333 ( 79 n); Pd: 0.000 (s: 0.74), Pa: 0.000 (s: 0.92) Exon 5 21334 21700 ( 367 n); cDNA 256 619 ( 364 n); score: 0.884 MATCH C06HBa0054K13.1-16+ SGN-E542827- 0.840 516 0.827 C PGS_C06HBa0054K13.1-16+_SGN-E542827- (16636 16645,17284 17303,17629 17638,21146 21254,21334 21700) Alignment (genomic DNA sequence = upper lines): TTTAAACCTT TTAGTGTTCA ATGAGTTTGC TGTGCGCCCA TTGGGTGAGG GAAGAGCTTT 16695 ||| ||| || TTTGAACTTT .......... .......... .......... .......... .......... 126 AACTCGTGCA GGTTCCTATT GCATCTCCGC GGGCTTCTGG ACCTGTTACT CGTCTACTAA 16755 .......... .......... .......... .......... .......... .......... 126 TTTGGGATCT TAAGATTGCA AGGGAAAAGT GTGAAAATCT ACTGGCTGAA AATGCATACT 16815 .......... .......... .......... .......... .......... .......... 126 GATTTAACTG CATCTAAAGA AGAAGTTGGT TGATTGAAGG ATCAGTTAGT ACAGAAGAAG 16875 .......... .......... .......... .......... .......... .......... 126 CTTGATAGCA ACGCTAGAGT GGACTGGATC CTCCAGTTAC TTGCTTCTTC ATCCTGTCCT 16935 .......... .......... .......... .......... .......... .......... 126 CCAAACCCCA ATCATTCCTC TTCTTGATCC CTGCTTTCTG GTCTAGTTTC TTATACTTTT 16995 .......... .......... .......... .......... .......... .......... 126 GGACTGAAGA CATTGTTATG TTCTTTTGAG TTTTGTGCTT AGACTGAATA TTTTGTGAGC 17055 .......... .......... .......... .......... .......... .......... 126 TTAAAATGTT GGTGTATCTC GGATCCTCTG CTTCCTTCGT TCTTGCATGT TTTTGCATAT 17115 .......... .......... .......... .......... .......... .......... 126 GTTTACAGAT GGCTAATATC ATTAGATTGG AGGTATCTTG TTGTGTTCTA CGCGATGTTG 17175 .......... .......... .......... .......... .......... .......... 126 CTCTTCCGGA GCTCTGCGTT TTCGTTGGCT TGGTTTACTG TTTTAACGCT TTTCTCTTCT 17235 .......... .......... .......... .......... .......... .......... 126 TTTTGATATG TATTGCTCTT GTGTACTGTG TGTATTGACC TTATACAGGA AATAGGAGTA 17295 | | | || | .......... .......... .......... .......... ........GT ATT-TGA-TT 136 GACGATTTGT CATCATCAAA AAAGAGGGAA AATGTGTTGG GTTTTATTTT CCCTAAATTT 17355 || ||||| GAAGATTT.. .......... .......... .......... .......... .......... 144 CTTATCATAA ATAGGTTTTC CTTTAAGGGG AAGGTTTTGA TTGACTAATC ATTTTCTTGT 17415 .......... .......... .......... .......... .......... .......... 144 AGGAAAAGGT TTAGGACTCT ATAAATAGAG AAATGTTCCT TCTAACTTAG TCAGCATTCA 17475 .......... .......... .......... .......... .......... .......... 144 CAATGTAGTC TTAAGAGCTT TGAGAGTTTT GGTTAGGGAG AGAATTTATG GGTCACAAGT 17535 .......... .......... .......... .......... .......... .......... 144 TGGATACATT ATCACTTGTG TGAACCTCCC ATGTATTCCG AGTGAATTGG TTGAGGTTGT 17595 .......... .......... .......... .......... .......... .......... 144 TTCTCTCTGT ATTTTGTACT CTCATATTTA TAGTGGATTG CTCATCTCCT TTGTGGACGT 17655 || ||| | .......... .......... .......... ...TGTGTTG TTT....... .......... 154 AGGTCGATTG ACCGAACCAC ATTAAATCTT TGTGTGTTTT GGTATATTTC TCGTTGTCTT 17715 .......... .......... .......... .......... .......... .......... 154 CTTACTCGTG GTCTTTTGAG GTTTGCTTTG CTAGCTTCCG CGTTTACACC TGCTGATTTT 17775 .......... .......... .......... .......... .......... .......... 154 CGGTCCTAAC AAAATGATGG TTTACGAAGT TGACGATAGA CATGCAATCA GATTTCAAAA 17835 .......... .......... .......... .......... .......... .......... 154 AGAGCTGGGA GAAAAGATTT CAAAAACGAG AGAAAGAAAA GAGAGCTAAC ACACAAAGGC 17895 .......... .......... .......... .......... .......... .......... 154 CAATCAATTT GAGAGATCAT AGAAATATAA GTTAAGAAGT TCTATAGTTA GAATTTCTTT 17955 .......... .......... .......... .......... .......... .......... 154 TGTCATGAGT AGAGTGTTTT GATTCGTACT TAGAGTCATT ATCGTAGGAG GAGTGGATTT 18015 .......... .......... .......... .......... .......... .......... 154 GGCTTCTTGT AGAGTTGAGT CTTTGAGAGG TTTGTGACAA GGAGTGGATT TGACTTCTTG 18075 .......... .......... .......... .......... .......... .......... 154 GAGAGTAGAG ATAGTCGATT ATAGTTAATC GAAAGTTTTT CTGTGAGTTC ATTGATGAGT 18135 .......... .......... .......... .......... .......... .......... 154 TAATAACTTT GATAGCCACT CAACTATCAA TTGTTTTCAC AGATATAGAC ATCTGAAATG 18195 .......... .......... .......... .......... .......... .......... 154 CTCTGTTGTT TGTGACTTTA TAAACTTGTT GATTTTAGTA TATATCCTCA AAATGTAAGT 18255 .......... .......... .......... .......... .......... .......... 154 TGTACTCCTA CATTCCAAGT CTGCATAATA TGGCCATTTT CAATGCATGA CTGTGCTACA 18315 .......... .......... .......... .......... .......... .......... 154 TGTGTGTGAC TTTGTTTATC AATTCTCTGC TGGAACGCAT ATGACAACAA TCTATGTTCC 18375 .......... .......... .......... .......... .......... .......... 154 GAGATTATCA ACAACTTGAA TATCCCTGCT AACCAGACTG CAACTAGTTG TTGCCTGCAA 18435 .......... .......... .......... .......... .......... .......... 154 TCACATATCT GCATATTGTT GCACAGGACT GTGATTGTCT TTATTGGTTG CTAAATGTAC 18495 .......... .......... .......... .......... .......... .......... 154 GTTCCCTCAT TCACTTAGCT GCATAGAGTG CTGACTATTA GAGTTTAGGG CCTGATGACA 18555 .......... .......... .......... .......... .......... .......... 154 TGATTATCTC CAACCTAAAA TTCGTAAACA CAAACCAAGC TAACCAAAAC TAGTTTAGTT 18615 .......... .......... .......... .......... .......... .......... 154 CATAATGACA AGGAATTGTA CAGAAATAAA GGAGGAATTT TAATCTTTCT GAAATGATCA 18675 .......... .......... .......... .......... .......... .......... 154 TAATGCACAA CTACCTGAAC TTTCTGTTCC TAATAAACAA CAACTTAAAT AATATTTAAG 18735 .......... .......... .......... .......... .......... .......... 154 CTGAAAGACA AGAAAAACGG AAAGTCCAGA AGTTGTATTT AACATAGAGG AAATCAAGGA 18795 .......... .......... .......... .......... .......... .......... 154 GGAACATTAT TCCTTGTCAA CTTTTTCCTT CTGAAACTTC GCATTCCCAA CCTCTCCAAA 18855 .......... .......... .......... .......... .......... .......... 154 TTACAACTTC CTCTCGCTGT TTTTAGTAAT TGAGTGGGAG TGTTAAAATG TTGAATAATA 18915 .......... .......... .......... .......... .......... .......... 154 TCATGCTTGT GACTATATTT TGTCCATAAA TATAGGTAAA AAAAGTTTTC TTCCTATTAT 18975 .......... .......... .......... .......... .......... .......... 154 TTCTTTTTAC TTAGGATCTT TTCTTTTTCC TTTTATATAA TATTTTTTTT TATCTAATTA 19035 .......... .......... .......... .......... .......... .......... 154 GAAGAATAAT TAACTGAATA GAAGTATGGA AACTATAGAT AACCTACCGT ATGTACTGGT 19095 .......... .......... .......... .......... .......... .......... 154 ATCACCCCAT TCTTAATCTT ATTATGAAAT TAAAATTAGT TTGTCAAAAT GGTTTGATTA 19155 .......... .......... .......... .......... .......... .......... 154 TCTCTTGGTA ATTTATTAAT CACGGACCAA TATATACCTT TAACAAAAGA TTACAATAAA 19215 .......... .......... .......... .......... .......... .......... 154 AAATATTATA TAAAAGAAAA ATAAAAAAAA GATCCTAAGT AAAAAAAATA ATAGGAAGAA 19275 .......... .......... .......... .......... .......... .......... 154 AACTTTTTTA CATAAATAAT ATGGACAAAA TAATATGTTG CTAAAATTGT GAGATTATAA 19335 .......... .......... .......... .......... .......... .......... 154 TAATTTTGAT ACTTGATATA TAATATATTT ATTAACTAAA TCATGCTTAG AGGTTTAGTT 19395 .......... .......... .......... .......... .......... .......... 154 TGAAAAATTA AATCTTAATC ATTTATTTTA ACCTATGACA TGTGTCATTA ATCCAAATAG 19455 .......... .......... .......... .......... .......... .......... 154 AAACTTGGGG AAAATGGAGA GAAGCCGAAT CCCTCCGGAA CTTCGCCACA AAAATCTGAC 19515 .......... .......... .......... .......... .......... .......... 154 CAAAGTCATA ACAAGCTGCT GCAACCTTGA TTTCAAGGTC CTGGTGTTGG AATACATGCC 19575 .......... .......... .......... .......... .......... .......... 154 CAATGGGACA CTTGATAAAT GGTTATATTC TCACAACTTG TTCTTAAACT TATTGCAGAG 19635 .......... .......... .......... .......... .......... .......... 154 ATTGGATATA ATGATAGATG TTGCATCTGC AATGGACTAT CTCCACAATG GCTATTCAAC 19695 .......... .......... .......... .......... .......... .......... 154 GCCTGTGGTG CATTGTGACT TGAAGCCAAG CAATATGTTG CTAGATCAAG AAATGGTTGG 19755 .......... .......... .......... .......... .......... .......... 154 TCAAGTTAGT GATTTTGGCA TTGCAAAATT GTTAGATGTA GGGGAGGCTT TCGTTCAAAC 19815 .......... .......... .......... .......... .......... .......... 154 AAGAACAACT GCAACCATCG GATATATTGC TCCAGTATAT TAGAAACTTC TATAGTTAAG 19875 .......... .......... .......... .......... .......... .......... 154 CAATTCTTTC CCCTATAAAT GGATTGACAC TCTCAGTTTT GGCATATTTC ATTTTAACTA 19935 .......... .......... .......... .......... .......... .......... 154 GGAAGCTTTC ATGATCATTT TTTACCAAGA TTACAGTGTA TGGACAAGAT GGAATAGTAT 19995 .......... .......... .......... .......... .......... .......... 154 CCACGAGTTG TGATGTTTAT AGTTTTGGCA TCCTAATGAT GGAGAGGTTC ACAAGAAGGA 20055 .......... .......... .......... .......... .......... .......... 154 AACCAAGTGA TGAAATATTT ACAGGAGAAA CAATCATAAA ATAAGTTCAG GGAAAAAATG 20115 .......... .......... .......... .......... .......... .......... 154 CACAAGTACC CCTCAACCTA TGTCCGATAG GTCGAAAAGG GATAGAAAAT TACTTATAAA 20175 .......... .......... .......... .......... .......... .......... 154 ATAAGTTGAG GGGGTAATAG GACCTTAGTG TTGTATAAGT GTGTCTCTGA AATTTCGGAC 20235 .......... .......... .......... .......... .......... .......... 154 ATAGGTTGAG GGGGTACCTG TGCATTTTCC CTCAGAATTA TTTACATCTT AACTTTATCA 20295 .......... .......... .......... .......... .......... .......... 154 GTTTTTAAGT TTTATATTTG AACTATTGAA AGTATGAGTT TTCGACCTAA ACAATCACCT 20355 .......... .......... .......... .......... .......... .......... 154 AATGATTAGT GAAACACACC TTGACTAATT TATAATGTTG TGGTTAATAC ACTCTCTTAT 20415 .......... .......... .......... .......... .......... .......... 154 CTATTTAAAA TTTTTGTCAT GTAGCTCTCC ACATGAAAAA ATAATTTCAC TGTGACAAAG 20475 .......... .......... .......... .......... .......... .......... 154 CTAAATAAAT TAATATTACG TTAAATGTTA GGATTAAAGA TACATATTAT CACCATATAA 20535 .......... .......... .......... .......... .......... .......... 154 ATTAATTTAT TCAGTTTTGT GCCTGATATC TTCTTCTCCA CCTTATTAGT CGTGGTCTCA 20595 .......... .......... .......... .......... .......... .......... 154 TCTCAGCCGC GGGTAAATAT CTCATATACT TGGAAGGGGA GAATTTAGAT TATATATATT 20655 .......... .......... .......... .......... .......... .......... 154 CATTCTCTAA TATTAGTAAT CAATGTGGTG AGATTAGTGA ATTTCTTTCT TCTAAAATTT 20715 .......... .......... .......... .......... .......... .......... 154 GAACACTTGA AACGAATTTT TGTAATATAA ACTATTTATA ACCAACACAA AATTGTCTTA 20775 .......... .......... .......... .......... .......... .......... 154 TTTGAACTAG TGAATTCCAA ATAATAAAGG TTAATAACCA AGTGGCAACT AACCATTATA 20835 .......... .......... .......... .......... .......... .......... 154 AGGTCACACA ATTTTAAGAT AATACTGTAA AGCATTCTTT GATTATCTGC CTTGACCTTG 20895 .......... .......... .......... .......... .......... .......... 154 CTTTGTGCCT TTGGTCTTTG GCTCAACAAT AAGATAGTAT ATTGGAAAGT AAATATTTTT 20955 .......... .......... .......... .......... .......... .......... 154 GCTTTACTGA TTGCTTTGCT TTTTTGCAGA AAAGGGGATA TTATTTGTTT TTTTCCACTT 21015 .......... .......... .......... .......... .......... .......... 154 CCCTTTTTAT AATGGAAGAC TCTTGAAAGC AATTGAGTCT ATTTAAATGT TATTTTATTC 21075 .......... .......... .......... .......... .......... .......... 154 TACCTTTTAT TTTCTTCCTT TAACTTCTTG TTCAAGTAAA AAAAAGTTTT TGAATTTTGA 21135 .......... .......... .......... .......... .......... .......... 154 AAGATAAAAG AATAATATCA TAGTTATAG- TTATATATAA AAGGGAAAAA GGTCTGATAT 21194 | |||||| | || || |||| ||| | ||||||| || |||||| .......... ACAAATATCC TCTTTTAAGT TTATCTATTT TACGGAAAAA -GTTTGATAT 203 ACCCCTCAAC TTTGTCATTT GGAGCTCATA TACCCCTCGT TATAAAAGTG GCTCATATAT 21254 | ||||| |||||||||| | || | | | |||| || |||| || ||| |||||| ATTTCTCAAT TTTGTCATTT GCAG--C--- -A-CTGTCGT TACAAAA-TG GCTAATATAT 255 GCCCTTACCG TTATACAAAC GGCTCACATT TACCCCTGCT GTTATAAAAT GACTCACATA 21314 .......... .......... .......... .......... .......... .......... 255 TACCCTTCAT TTAACGGAAG TTAAAAAATT TATTTTAAAT TTATATTTAT TACTTTTAAT 21374 |||||||||| ||||||||| |||||||||| ||||||| || .......... .........A TTAAAAAATT AATTTTAAAT TTATATTTAT TACTTTTGAT 296 TTTTTTTAAA AAAAATTATT TAGAGATATA TATGATTCTT CTATCAAAGT TCAATG-TAT 21433 | ||||||| |||||||||| || || |||| ||| |||||| |||||||||| || | | ||| TGTTTTTAA- AAAAATTATT TAAAGGTATA TATTATTCTT CTATCAAAGT TCGAGGTTAT 355 ATTTTAATTT TTTTCATACA TAAATTATTT TTTGACTTCA TTTATTATAA TTATTTGAGT 21493 | |||||||| |||| ||||| ||||||||| ||||||||| |||||||||| |||||||||| A-TTTAATTT TTTTTATACA TAAATTATTG TTTGACTTCT TTTATTATAA TTATTTGAGT 414 TTCTTATTCT TATTTTGTTT TTTTCTTTCA TTCCTTAGTT TAAATAAAAA AATTAAACTA 21553 || ||||||| ||||| ||| |||| ||| || || | | ||||| || ||||||| TTGTTATTCT AATTTTTTTT CTTTCATTCC TTAGTTTAAA GAGA-AAAAA AACTAAACTA 473 TTTTTTTACT GTGTATTGTA ATTTAATTTC GTATTCGAAG AAAAAATTTG GTCATCTACA 21613 ||||||| | |||||||||| ||||||||| |||||| ||| ||||| |||| |||||||||| TTTTTTTTGT GTGTATTGTA ATTTAATTTG GTATTCAAAG AAAAATTTTG GTCATCTACA 533 ATAAGTTTTA CAAGAATATT AGTGAAACAT AAATAAATTT GATTATCAAA ATAATAATTA 21673 |||||||||| |||||||||| ||||||| || |||||||||| |||||||||| |||||||||| ATAAGTTTTA CAAGAATATT AGTGAAATAT AAATAAATTT GATTATCAAA ATAATAATTA 593 TAAATTAGTC ATTGAAATAC AAAAAAA 21700 |||||||||| ||| || | ||||||| TAAATTAGTC ATT-AACCAA AAAAAAA 619 hqPGS_C06HBa0054K13.1-16+_SGN-E542827- (21334 21700) ******************************************************************************** EST sequence 5 +strand 628 n (File: SGN-E212888+) 1 AGGGATCACT TGCAATGGGC GCCATAGAGT CACTGCTTTA GACATTTCTA GCATGCAACT 61 TCATGGTACC ATTCCTCCAC ACCTTGGAAA TCTCTCATTT CTCGTATCCC TTGACATTAG 121 TAACAACACT TTCCATGGAC ATCTCTCCCA AGAGTTGACT CACTTGCGGA GGTTGAAATT 181 GATTGATGTT ACAAGAAACA ATTTTAGTGG TGCCATCCCA TCGTTCTTAA GTTCGTTACC 241 TAATCTTCAA TTCCTTTACC TTTCAAACAA CCAATATTCA GGGGAAATTC CATCTTCTCT 301 TTCCAATCTA ACAAATCTTC AAGAGTTGAG AATACAGAGG AATTTTCTTC AAGGAAAAAT 361 CCCTCCTGAA ATTGGTAATC TTCGTTACTT GACTTTTTTA GACCTGCAAG GTAATAGACT 421 TACTGGCTCT ATACCGCCGT CAATCTTCAA CATGACTTCA TTGACAAGAC TTGCTATAAT 481 ACACAATCGT CTTGTCGGGA AACTTCCTGT TGATATTTGT GACAATCTAC CAAATCTTCA 541 AGTGCTTTTA CTCTCATCAA ACAACCTGAA TGGACGAAAT ACACAAATTT ACAGAAATGC 601 TCAAACCTAC AACTGNTGAC ATTGTCTG Predicted gene structure (within gDNA segment 21598 to 28288): Exon 1 22430 23060 ( 631 n); cDNA 2 628 ( 627 n); score: 0.730 MATCH C06HBa0054K13.1-16+ SGN-E212888+ 0.730 631 1.005 C PGS_C06HBa0054K13.1-16+_SGN-E212888+ (22430 23060) Alignment (genomic DNA sequence = upper lines): GGAATCACTT GCAGCTCTCG ACACCATCGA GTCACTGCTT TAGACATTTC AAGCATGCAA 22489 || ||||||| ||| | | | |||| || |||||||||| |||||||||| ||||||||| GGGATCACTT GCA---ATGG GCGCCATAGA GTCACTGCTT TAGACATTTC TAGCATGCAA 58 CTTCATGGTA CCATTCCTCC ACACCTCGGA AACCTGTCAT TTCTTTCTTC CCTTGACATC 22549 |||||||||| |||||||||| |||||| ||| || || |||| |||| || ||||||||| CTTCATGGTA CCATTCCTCC ACACCTTGGA AATCTCTCAT TTCTCGTATC CCTTGACATT 118 AGTAACAACA CTTTTCATGG AGATTTGCCA CAAGAATTGG CTCGTCTGCA GAGGTTGAAA 22609 |||||||||| |||| ||||| | || | | ||||| ||| ||| ||| |||||||||| AGTAACAACA CTTTCCATGG ACATCTCTCC CAAGAGTTGA CTCACTTGCG GAGGTTGAAA 178 TCGATTAATG TCACAAGCAA TAACTTCACC GGAGCCATTC CATCATTTTT AAGTTTGTTA 22669 | |||| ||| | ||||| || || || | || ||||| | |||| || || ||||| |||| TTGATTGATG TTACAAGAAA CAATTTTAGT GGTGCCATCC CATCGTTCTT AAGTTCGTTA 238 CCAAACCTAC GCTTTGTGCA CCTATCAAGC AACCAATTTT CTGGGAAAAT TCCATCCTCC 22729 || || || | || | | ||| |||| | ||||||| || | ||| |||| |||||| || CCTAATCTTC AATTCCTTTA CCTTTCAAAC AACCAATATT CAGGGGAAAT TCCATCTTCT 298 CTTTCCAATA TAACAAAGCT GCAAAGGTTA TACTTGGATA GAAATTTTCT TGAAGGAGAG 22789 ||||||||| ||||||| || ||| ||| | | | | |||||||| | ||||| | CTTTCCAATC TAACAAATCT TCAAGAGTTG AGAATACAGA GGAATTTTCT TCAAGGAAAA 358 ATCCCTCGAG AAATCGGTGA TCTTCGTTAC TTGACTATCC TAGACCTGCA AATTAATCAG 22849 ||||||| | |||| ||| | |||||||||| |||||| | |||||||||| | |||| ATCCCTCCTG AAATTGGTAA TCTTCGTTAC TTGACTTTTT TAGACCTGCA AGGTAATAGA 418 CTTAGTGGCT CTATACCACC ATCCATTTTT AACATTACTA CAATG-CATG TGATTGCTCT 22908 |||| ||||| ||||||| || || || || ||||| ||| || || || | ||||| | CTTACTGGCT CTATACCGCC GTCAATCTTC AACATGACTT CATTGACAAG -ACTTGCTAT 477 TACGGGCAAC AATCTTACTG GAAATCTTCC AAAAACGATA TGTGATCATC TTCGAGACTT 22968 | ||| |||| | | || ||||| || ||||| ||| | | | | | AATACACAAT CGTCTTGTCG GGAAACTTCC TGTTGATATT TGTGACAATC TACCAAATCT 537 GGAAGGACTT TACCTCAGTA AAAACTCCCT AGATGGAGTT ATTCCACCAA ACCTGGAGAA 23028 ||| ||| | ||| |||| ||| ||||| | | || ||| | | |||| TCAAGTGCTT TTACTCTCAT CAAACAACCT GAATGGACGA AATACA-CAA ATTTACAGAA 596 ATGCAGAAAG CTTCAAAAAT TGCAATTGGG TG 23060 |||| ||| || ||| || |||| || ATGCTCAAAC CTACAACTGN TGACATTGTC TG 628 hqPGS_C06HBa0054K13.1-16+_SGN-E212888+ (22430 23060) ******************************************************************************** EST sequence 13 +strand 617 n (File: SGN-E288383+) 1 TCAACTTGTG GGGGAATAAT TTTGACATCG ATTCAACATT GAGCTTCCTT GAATCATTGA 61 CAAACTGTAG GAATCTAAGA GTACTCACGC TTGGTGGTAA TCCGTTGGAT GGTGTTTTGC 121 CTGCATCTGT TGGGAATTTC TCAAACTGCT TGCAAATATG TGAAGCATCT AAATGTAAAC 181 TGAATGGTGT CATTTCAAAA CAAATTACTA ATCTTACTGG ATTGACAAGG ATGAGTCTGT 241 CGAACAATCA GTTGATAGGC CATATTCCAA CAACAGTGCA AGGAATGCTG AACCTTCAAG 301 AACTTTACCT ATGAAGCAAC AAGTTAGAAG GAGCCATACC AGATGTTATC TGCAGTTGAC 361 AGTATCTTGG TGCATTAGAA TTGTCAGAGA ATCAATTTTC TAGTTTCGTT CCACCATGCT 421 TAGGGAATGT TACTAGTTTG AGGACACTCT ATCTAGATAA CAACAAGCTG GATTCTAGAT 481 TACCTGCAAG ATTGGGGGGA CTTCAAAACA TCATAGAGTT CAATATTTCA TCCAATTATT 541 TGAGTGGAGA AATTCCGCTA GAGAGCGGAA ACTTGAATGG TGCAACACTG ATTGATCTGT 601 CAAATAATTA TTTTTCT Predicted gene structure (within gDNA segment 22645 to 28288): Exon 1 23563 24176 ( 614 n); cDNA 4 617 ( 614 n); score: 0.821 MATCH C06HBa0054K13.1-16+ SGN-E288383+ 0.821 614 0.995 C PGS_C06HBa0054K13.1-16+_SGN-E288383+ (23563 24176) Alignment (genomic DNA sequence = upper lines): ACTTGCTGTG GAATAATTTT GTCAGCGATT CTACATTGAG CTTCCTTGCA TCATTGACAA 23622 ||||| | | |||||||||| | || ||||| | |||||||| |||||||| | |||||||||| ACTTGTGGGG GAATAATTTT GACATCGATT CAACATTGAG CTTCCTTGAA TCATTGACAA 63 ACTGTAGGAA TCTAAGAGCA CTCACGTTAG CAGGTAATCC GTTGGATGGT GTATTGCCTG 23682 |||||||||| |||||||| | |||||| | | |||||||| |||||||||| || ||||||| ACTGTAGGAA TCTAAGAGTA CTCACGCTTG GTGGTAATCC GTTGGATGGT GTTTTGCCTG 123 CATCTGTTGG TAATTTCTCA AACTCCTTGC AAATTTTTGA AGCATATAAT TGTACACTGA 23742 |||||||||| ||||||||| |||| ||||| |||| | ||| ||||| ||| |||| ||||| CATCTGTTGG GAATTTCTCA AACTGCTTGC AAATATGTGA AGCATCTAAA TGTAAACTGA 183 AGGGTGTCAT TCCTCGAGAA ATTGGTAATC TTACTGGACT GACAAGGATG AGTCTGTTTA 23802 | |||||||| | | | || ||| ||||| |||||||| | |||||||||| ||||||| | ATGGTGTCAT TTCAAAACAA ATTACTAATC TTACTGGATT GACAAGGATG AGTCTGTCGA 243 ACAATACATT AACTGGACAT ATTCCAAATA CTGTACATGG CATGTCGATC CTTCAAGAAC 23862 ||||| || | || ||| ||||||| | | || || || ||| || | |||||||||| ACAATCAGTT GATAGGCCAT ATTCCAACAA CAGTGCAAGG AATGCTGAAC CTTCAAGAAC 303 TTTACTTATT GAACAACAAG ATAGAAGGAA CCATACCAGA TGTTGTCTGT AATTTAAAGA 23922 ||||| ||| | ||||||| |||||||| |||||||||| |||| |||| | || | || TTTACCTATG AAGCAACAAG TTAGAAGGAG CCATACCAGA TGTTATCTGC AGTTGACAGT 363 GACTTGGTGC ATTACTCTTG TCAAAAAATC ATTTTTCTGG TTCGGTACCC TTCTGCTTAG 23982 |||||||| |||| ||| ||| | |||| | |||||| | || || || ||||||| ATCTTGGTGC ATTAGAATTG TCAGAGAATC AATTTTCTAG TTTCGTTCCA CCATGCTTAG 423 GGAACATTAC TAGTTTGAGG ATACTTCATC TATATAACAA CAAGCTGGAT TCTACATTAC 24042 |||| |||| |||||||||| | ||| ||| || ||||||| |||||||||| |||| ||||| GGAATGTTAC TAGTTTGAGG ACACTCTATC TAGATAACAA CAAGCTGGAT TCTAGATTAC 483 CTTCAAACTT GGGGAACCTT CAAGATCTCA TAGAATTAGA TGTTTCATTC AATTTATTTA 24102 || ||| || |||| ||| ||| | ||| |||| || | | |||||| | |||| || | CTGCAAGATT GGGGGGACTT CAAAACATCA TAGAGTTCAA TATTTCATCC AATTATTTGA 543 GTGGGGAAAT TCCAATGGAG AGTGGAAACT TGAAGGCTGC AACACACATT GATTTGTCAA 24162 |||| ||||| ||| | ||| || ||||||| |||| | ||| ||||| ||| ||| |||||| GTGGAGAAAT TCCGCTAGAG AGCGGAAACT TGAATGGTGC AACACTGATT GATCTGTCAA 603 ATAATTGTTT TTCT 24176 |||||| ||| |||| ATAATTATTT TTCT 617 hqPGS_C06HBa0054K13.1-16+_SGN-E288383+ (23563 24176) ******************************************************************************** EST sequence 3 +strand 509 n (File: SGN-E314138+) 1 AATTCTGGAA GTCACGTGCT CATCAAAGTA AATTTTATAT ACACTGATGC AACGGTCTAT 61 CTCCACAATG GGTGTTCAAA TCCAGTGGTG CATTGTGACT TGAAGCCAAG TGTCTTGCTT 121 GATCAAGACA TGGTTGGCCA TGTCAGTGAT TTTGGCATTG CAAAATTGTT AGGTGCAGGG 181 GAGAGTTTTG TTCAAACAAG GACAATAGCA ACCATTGGAT AATTGCTCCA GAGTATGGAC 241 AAGATGGAAT CGTATCCACA AGCTGCGATG TTTATAGTTT CGGTATCCTG ATTGATGGAG 301 ACGTTTACAA GAATCAGACC AGGTGATGAA AGATTTACTG GAGAGTTGAG CATACGACGT 361 TGGGTTAGTG ATTCTTTTCC AGATGAGATT CATAAGGTGG TGGATGCTAA TTTGGTACAG 421 CCTANGGGAT GAACGAATTG ACGCAAAGAT GCAGTGTCTG TTGTCTATTA TAGAGTTAGC 481 TTTGAGCTGT ACTTTAGCAA CACCTGATG Predicted gene structure (within gDNA segment 23085 to 28288): Exon 1 25025 25212 ( 188 n); cDNA 48 231 ( 184 n); score: 0.872 Intron 1 25213 25306 ( 94 n); Pd: 1.000 (s: 0.90), Pa: 0.953 (s: 0.88) Exon 2 25307 25582 ( 276 n); cDNA 232 509 ( 278 n); score: 0.822 MATCH C06HBa0054K13.1-16+ SGN-E314138+ 0.843 464 0.912 C PGS_C06HBa0054K13.1-16+_SGN-E314138+ (25025 25212,25307 25582) Alignment (genomic DNA sequence = upper lines): TGCAATGGAT TATCTCCACA ATGGCTATTC AACGCCTGTG GTGCATTGTG ACTTGAAGCC 25084 ||||| || |||||||||| |||| | ||| || || ||| |||||||||| |||||||||| TGCAACGGTC TATCTCCACA ATGGGTGTTC AAATCCAGTG GTGCATTGTG ACTTGAAGCC 107 AAGTAATGTC TTGTTAGATG AAGAAATGGT TGCTCATGTA AGTGATTTTG GCATTGCAAA 25144 ||| |||| ||| | ||| |||| ||||| || ||||| |||||||||| |||||||||| AAG---TGTC TTGCTTGATC AAGACATGGT TGGCCATGTC AGTGATTTTG GCATTGCAAA 164 AATGTTAGGT GCAGGGGAGG CTTTTGTTCA AACAAGGACA GTTGCAACCA TTGGATATAT 25204 | |||||||| ||||||||| ||||||||| |||||||||| | ||||||| ||||||| || ATTGTTAGGT GCAGGGGAGA GTTTTGTTCA AACAAGGACA ATAGCAACCA TTGGATA-AT 223 TGCTCCAGGT ATATTTCAAC TTTTTAAAGT TCTCATATCA TGTAAATACT CAAAACAGTT 25264 |||||||| TGCTCCAG.. .......... .......... .......... .......... .......... 231 AGGTATAAAT TGATTTGTGA TCATTTTCGA CCATGATTGC AGAGTATGGA CAAGATGGCA 25324 |||||||| |||||||| | .......... .......... .......... .......... ..AGTATGGA CAAGATGGAA 249 TAGTATCCAC GAGTTGTGAT GTTTATAGTT TTGGCATCGT GA-TGATGGA GACGTTCACA 25383 | |||||||| || || ||| |||||||||| | || ||| | || ||||||| |||||| ||| TCGTATCCAC AAGCTGCGAT GTTTATAGTT TCGGTATCCT GATTGATGGA GACGTTTACA 309 CGAACAAGAC CAAGTGATGA GATATTTACT GGAGACTTGA GCATACAGCG TTGGGTTAAT 25443 ||| |||| || ||||||| | ||||||| ||||| |||| |||||| || |||||||| | AGAATCAGAC CAGGTGATGA AAGATTTACT GGAGAGTTGA GCATACGACG TTGGGTTAGT 369 GATTCCTTTC CGGGTGAAAT TCACAAGGTG GTGGATTCGA ATTTGGTACA GCC-AGGAGA 25502 ||||| |||| | | ||| || ||| |||||| |||||| | | |||||||||| ||| | | || GATTCTTTTC CAGATGAGAT TCATAAGGTG GTGGATGCTA ATTTGGTACA GCCTANGGGA 429 TGAACAAATC GCTGCAAAGA TGCAATGTTT GTTATCTATC ATGGAATTAG CTTTGAAGTG 25562 ||||| ||| | ||||||| |||| ||| | ||| ||||| || || |||| |||||| || TGAACGAATT GACGCAAAGA TGCAGTGTCT GTTGTCTATT ATAGAGTTAG CTTTGAGCTG 489 CACTTTAGTG AGACCTGATG 25582 ||||||| | |||||||| TACTTTAGCA ACACCTGATG 509 hqPGS_C06HBa0054K13.1-16+_SGN-E314138+ (25025 25212,25307 25582) ******************************************************************************** EST sequence 23 -strand 812 n (File: SGN-E541708-) 1 ATCCAGTGGT GCATTGTGAC TTGAAGCCAA GTGTCTTGCT TGATCAAGAC ATGGTTGGCC 61 ATGTCAGTGA TTTTGGCATT GCAAAATTGT TAGGTGCAGG GGAGAGTTTT GTTCAAACAA 121 GGACAATAGC AACCATTGGA TAATTGCTCC AGAGTATGGA CAAGATGGAA TCGTATCCAC 181 AAGCTGCGAT GTTTATAGTT TCGGTATCCT GATTGATGGA GACGTTTACA AGAATCAGAC 241 CAGGTGATGA AAGATTTACT GGAGAGTTGA GCATACGACG TTGGGTTAGT GATTCTTTTC 301 CAGATGAGAT TCATAAGGTG GTGGATGCTA ATTTGGTACA GCCTAGGGGA TGAACGAATT 361 GACGCAAAGA TGCAGTGTCT GTTGTCTATT ATAGAGTTAG CTTTGAGCTG TACTTTAGCA 421 ACACCTGATG CAAGAATTAG TATGGAAGAT TCTCTTTCAA CACTTCAAAA TATCAGGCTC 481 CAGTTTGTCA ATAGTCGCCA CCGAAAAAAG CAACTGAAGG ATTTAGTACC GAAAAAAGCA 541 ACTTGCTTGG TAATGGCAAG GTCTACAATG TACAATTGGA GGGTGCATTC AAAAGTTTTG 601 ATACAGAAGA ATGTGAAATC TGACCAAAGT CATCAAAGCC TTAATGTTAG AATACATGTC 661 TAGTGGGACA CTTGATAAAT GGCTGTACTC TCACAAGTTG TTCTTGGATT TACTTCATAT 721 TATGTACTCT TTCACTTTCA GTGCCAGCTG GAATGGTGAT TTTCTAGCTA CTGGAGTTCA 781 CAATTCTAAT CCATAAAAAA AAAAAAAAAA AA Predicted gene structure (within gDNA segment 23865 to 28288): Exon 1 25059 25212 ( 154 n); cDNA 3 152 ( 150 n); score: 0.890 Intron 1 25213 25306 ( 94 n); Pd: 1.000 (s: 0.90), Pa: 0.953 (s: 0.88) Exon 2 25307 25653 ( 347 n); cDNA 153 501 ( 349 n); score: 0.813 PPA cDNA 793 812 MATCH C06HBa0054K13.1-16+ SGN-E541708- 0.836 501 0.617 C PGS_C06HBa0054K13.1-16+_SGN-E541708- (25059 25212,25307 25653) Alignment (genomic DNA sequence = upper lines): CCTGTGGTGC ATTGTGACTT GAAGCCAAGT AATGTCTTGT TAGATGAAGA AATGGTTGCT 25118 || ||||||| |||||||||| ||||||||| ||||||| | ||| |||| ||||||| CCAGTGGTGC ATTGTGACTT GAAGCCAAG- --TGTCTTGC TTGATCAAGA CATGGTTGGC 59 CATGTAAGTG ATTTTGGCAT TGCAAAAATG TTAGGTGCAG GGGAGGCTTT TGTTCAAACA 25178 ||||| |||| |||||||||| ||||||| || |||||||||| ||||| ||| |||||||||| CATGTCAGTG ATTTTGGCAT TGCAAAATTG TTAGGTGCAG GGGAGAGTTT TGTTCAAACA 119 AGGACAGTTG CAACCATTGG ATATATTGCT CCAGGTATAT TTCAACTTTT TAAAGTTCTC 25238 |||||| | | |||||||||| ||| |||||| |||| AGGACAATAG CAACCATTGG ATA-ATTGCT CCAG...... .......... .......... 152 ATATCATGTA AATACTCAAA ACAGTTAGGT ATAAATTGAT TTGTGATCAT TTTCGACCAT 25298 .......... .......... .......... .......... .......... .......... 152 GATTGCAGAG TATGGACAAG ATGGCATAGT ATCCACGAGT TGTGATGTTT ATAGTTTTGG 25358 || |||||||||| |||| || || |||||| || || ||||||| ||||||| || ........AG TATGGACAAG ATGGAATCGT ATCCACAAGC TGCGATGTTT ATAGTTTCGG 204 CATCGTGA-T GATGGAGACG TTCACACGAA CAAGACCAAG TGATGAGATA TTTACTGGAG 25417 ||| ||| | |||||||||| || ||| ||| |||||| | |||||| | | |||||||||| TATCCTGATT GATGGAGACG TTTACAAGAA TCAGACCAGG TGATGAAAGA TTTACTGGAG 264 ACTTGAGCAT ACAGCGTTGG GTTAATGATT CCTTTCCGGG TGAAATTCAC AAGGTGGTGG 25477 | |||||||| || |||||| |||| ||||| | ||||| | ||| ||||| |||||||||| AGTTGAGCAT ACGACGTTGG GTTAGTGATT CTTTTCCAGA TGAGATTCAT AAGGTGGTGG 324 ATTCGAATTT GGTACAGCC- AGGAGATGAA CAAATCGCTG CAAAGATGCA ATGTTTGTTA 25536 || | ||||| ||||||||| ||| |||||| | ||| | | |||||||||| ||| |||| ATGCTAATTT GGTACAGCCT AGGGGATGAA CGAATTGACG CAAAGATGCA GTGTCTGTTG 384 TCTATCATGG AATTAGCTTT GAAGTGCACT TTAGTGAGAC CTGATGAAAG AATTAGCATG 25596 ||||| || | | |||||||| || || ||| |||| | || |||||| ||| |||||| ||| TCTATTATAG AGTTAGCTTT GAGCTGTACT TTAGCAACAC CTGATGCAAG AATTAGTATG 444 AATGATGCTC TTTCAGCACT CAAAAAGATT AGACGACAGC TTGTTAGTAG TCGGCAC 25653 | ||| ||| ||||| |||| |||| || || | ||| |||| | ||| ||| ||| GAAGATTCTC TTTCAACACT TCAAAATATC AGGCTCCAGT TTGTCAATAG TCGCCAC 501 hqPGS_C06HBa0054K13.1-16+_SGN-E541708- (25059 25212,25307 25653) Total number of EST alignments reported: 29 ________________________________________________________________________________ Predicted gene locations (9) in segment 1 to 28288: PGL 1 (- strand): 3649 3133 AGS-1 (3649 3133) SCR (e 0.884) Exon 1 3649 3133 ( 517 n); score: 0.884 PGS (3649 3133) SGN-E205976- 3-phase translation of AGS-1 (-strand): . . . . . . 3649 CTCACGAAAACTCAACCCTACAAAGAGCCAAACCCACCCTTTGTATAATAAACTGTAAAT L T K T Q P Y K E P N P P F V - - T V N S R K L N P T K S Q T H P L Y N K L - I H E N S T L Q R A K P T L C I I N C K . . . . . . 3589 TACAATCAAGAACAAAACAAGAAGATAGTTCTACGCGTTAAAAACCTTCTCACTCAAGAA Y N Q E Q N K K I V L R V K N L L T Q E T I K N K T R R - F Y A L K T F S L K N L Q S R T K Q E D S S T R - K P S H S R . . . . . . 3529 CGTTTTAAACGTATCAAACCTATCGATCTTGAAGACTTCAGTTTGATGAATAATTATCAC R F K R I K P I D L E D F S L M N N Y H V L N V S N L S I L K T S V - - I I I T T F - T Y Q T Y R S - R L Q F D E - L S . . . . . . 3469 TTTTCTCTCAATGTGAAGTCATGGGATTCTTCATCAACATCGTCCTCTTCTTATAGAGTT F S L N V K S W D S S S T S S S S Y R V F L S M - S H G I L H Q H R P L L I E F L F S Q C E V M G F F I N I V L F L - S . . . . . . 3409 TCTTTTGCCTTAAATCCTTATCAGATAAGGTAAGGAACTTATTGTTAAACAAGGATTCCC S F A L N P Y Q I R - G T Y C - T R I P L L P - I L I R - G K E L I V K Q G F P F F C L K S L S D K V R N L L L N K D S . . . . . . 3349 TTTTAAAGTACAATCCTTATTATATACAACTTCCTTCCTTAATAATATATTTAAGGTTTT F - S T I L I I Y N F L P - - Y I - G F F K V Q S L L Y T T S F L N N I F K V F L L K Y N P Y Y I Q L P S L I I Y L R F . . . . . . 3289 CCTTATGTGTATCAACTTATACCTTTAATATATTATTTTTGGCTTTGACAAATAACTATA P Y V Y Q L I P L I Y Y F W L - Q I T I L M C I N L Y L - Y I I F G F D K - L Y S L C V S T Y T F N I L F L A L T N N Y . . . . . . 3229 TTTTCTTGATTACTTGGCTGATCCATTTTACTCGATCTTGGACTCGAGCTTGGCTTCTTT F S - L L G - S I L L D L G L E L G F F F L D Y L A D P F Y S I L D S S L A S F I F L I T W L I H F T R S W T R A W L L . . . . 3169 TGCTGCGTATATTTGCTACTGATTATTTGCGCTTCTT C C V Y L L L I I C A S A A Y I C Y - L F A L L L L R I F A T D Y L R F Maximal non-overlapping open reading frames (>= 64 codons): >C06HBa0054K13.1-16-_PGL-1_AGS-1_PPS_1 (3413 3135) (frame '0'; 279 bp, 93 residues) 1 SFFCLKSLSD KVRNLLLNKD SLLKYNPYYI QLPSLIIYLR FSLCVSTYTF NILFLALTNN 61 YIFLITWLIH FTRSWTRAWL LLLRIFATDY LRF 3-phase translation of AGS-1 (+strand): . . . . . . 3133 AAGAAGCGCAAATAATCAGTAGCAAATATACGCAGCAAAAGAAGCCAAGCTCGAGTCCAA K K R K - S V A N I R S K R S Q A R V Q R S A N N Q - Q I Y A A K E A K L E S K E A Q I I S S K Y T Q Q K K P S S S P . . . . . . 3193 GATCGAGTAAAATGGATCAGCCAAGTAATCAAGAAAATATAGTTATTTGTCAAAGCCAAA D R V K W I S Q V I K K I - L F V K A K I E - N G S A K - S R K Y S Y L S K P K R S S K M D Q P S N Q E N I V I C Q S Q . . . . . . 3253 AATAATATATTAAAGGTATAAGTTGATACACATAAGGAAAACCTTAAATATATTATTAAG N N I L K V - V D T H K E N L K Y I I K I I Y - R Y K L I H I R K T L N I L L R K - Y I K G I S - Y T - G K P - I Y Y - . . . . . . 3313 GAAGGAAGTTGTATATAATAAGGATTGTACTTTAAAAGGGAATCCTTGTTTAACAATAAG E G S C I - - G L Y F K R E S L F N N K K E V V Y N K D C T L K G N P C L T I S G R K L Y I I R I V L - K G I L V - Q - . . . . . . 3373 TTCCTTACCTTATCTGATAAGGATTTAAGGCAAAAGAAACTCTATAAGAAGAGGACGATG F L T L S D K D L R Q K K L Y K K R T M S L P Y L I R I - G K R N S I R R G R C V P Y L I - - G F K A K E T L - E E D D . . . . . . 3433 TTGATGAAGAATCCCATGACTTCACATTGAGAGAAAAGTGATAATTATTCATCAAACTGA L M K N P M T S H - E K S D N Y S S N - - - R I P - L H I E R K V I I I H Q T E V D E E S H D F T L R E K - - L F I K L . . . . . . 3493 AGTCTTCAAGATCGATAGGTTTGATACGTTTAAAACGTTCTTGAGTGAGAAGGTTTTTAA S L Q D R - V - Y V - N V L E - E G F - V F K I D R F D T F K T F L S E K V F N K S S R S I G L I R L K R S - V R R F L . . . . . . 3553 CGCGTAGAACTATCTTCTTGTTTTGTTCTTGATTGTAATTTACAGTTTATTATACAAAGG R V E L S S C F V L D C N L Q F I I Q R A - N Y L L V L F L I V I Y S L L Y K G T R R T I F L F C S - L - F T V Y Y T K . . . . 3613 GTGGGTTTGGCTCTTTGTAGGGTTGAGTTTTCGTGAG V G L A L C R V E F S - W V W L F V G L S F R E G G F G S L - G - V F V Maximal non-overlapping open reading frames (>= 64 codons): none PGL 2 (- strand): 11713 11197 AGS-1 (11713 11197) SCR (e 0.896) Exon 1 11713 11197 ( 517 n); score: 0.896 PGS (11713 11197) SGN-E205976- 3-phase translation of AGS-1 (-strand): . . . . . . 11713 CTCACGAAAACTCAACCCTACAAAGAGCCAAACCCACCCTTTGTATAATAAACTGTAAAT L T K T Q P Y K E P N P P F V - - T V N S R K L N P T K S Q T H P L Y N K L - I H E N S T L Q R A K P T L C I I N C K . . . . . . 11653 TACAATCAAGAACAAAACAAGAAGATAGTTCTACACGTTAAAAACCTTCTCACTCAAGAA Y N Q E Q N K K I V L H V K N L L T Q E T I K N K T R R - F Y T L K T F S L K N L Q S R T K Q E D S S T R - K P S H S R . . . . . . 11593 CGTTTTAAACGTAGCAAACCTATTGATCTTGAAGACTTTAGTTTGATGAATAATTCTCAC R F K R S K P I D L E D F S L M N N S H V L N V A N L L I L K T L V - - I I L T T F - T - Q T Y - S - R L - F D E - F S . . . . . . 11533 TTTTCTCTCTATGTGAAGTCGTGGGATTCTTCATCAGCATCGTCCTCTTCTTATAGAGTT F S L Y V K S W D S S S A S S S S Y R V F L S M - S R G I L H Q H R P L L I E F L F S L C E V V G F F I S I V L F L - S . . . . . . 11473 TCTTTTGCCTTAAGTCCTTATCAGATGAGGTAAGAAAGTTATTGTTAAACAAGGATTCCC S F A L S P Y Q M R - E S Y C - T R I P L L P - V L I R - G K K V I V K Q G F P F F C L K S L S D E V R K L L L N K D S . . . . . . 11413 TTTTAAAGTACAATCCTTATTATATACAACTTCCTTCCTTAATAATATATTTAAGGTTTT F - S T I L I I Y N F L P - - Y I - G F F K V Q S L L Y T T S F L N N I F K V F L L K Y N P Y Y I Q L P S L I I Y L R F . . . . . . 11353 CCTTATTTGTATCAACTTATACCTTTAATATATTATTTTTGGCTTTGACAAATAACTCTA P Y L Y Q L I P L I Y Y F W L - Q I T L L I C I N L Y L - Y I I F G F D K - L Y S L F V S T Y T F N I L F L A L T N N S . . . . . . 11293 TTTTCTTGATTACTTGGCTGACCCATTTTACTCGATCATGGACTCGAGCTTGGCTTCTTT F S - L L G - P I L L D H G L E L G F F F L D Y L A D P F Y S I M D S S L A S F I F L I T W L T H F T R S W T R A W L L . . . . 11233 TGCTGCGTACATTTGCTACTGATTATTTGCGCTTCTT C C V H L L L I I C A S A A Y I C Y - L F A L L L L R T F A T D Y L R F Maximal non-overlapping open reading frames (>= 64 codons): >C06HBa0054K13.1-16-_PGL-2_AGS-1_PPS_1 (11477 11199) (frame '0'; 279 bp, 93 residues) 1 SFFCLKSLSD EVRKLLLNKD SLLKYNPYYI QLPSLIIYLR FSLFVSTYTF NILFLALTNN 61 SIFLITWLTH FTRSWTRAWL LLLRTFATDY LRF 3-phase translation of AGS-1 (+strand): . . . . . . 11197 AAGAAGCGCAAATAATCAGTAGCAAATGTACGCAGCAAAAGAAGCCAAGCTCGAGTCCAT K K R K - S V A N V R S K R S Q A R V H R S A N N Q - Q M Y A A K E A K L E S M E A Q I I S S K C T Q Q K K P S S S P . . . . . . 11257 GATCGAGTAAAATGGGTCAGCCAAGTAATCAAGAAAATAGAGTTATTTGTCAAAGCCAAA D R V K W V S Q V I K K I E L F V K A K I E - N G S A K - S R K - S Y L S K P K - S S K M G Q P S N Q E N R V I C Q S Q . . . . . . 11317 AATAATATATTAAAGGTATAAGTTGATACAAATAAGGAAAACCTTAAATATATTATTAAG N N I L K V - V D T N K E N L K Y I I K I I Y - R Y K L I Q I R K T L N I L L R K - Y I K G I S - Y K - G K P - I Y Y - . . . . . . 11377 GAAGGAAGTTGTATATAATAAGGATTGTACTTTAAAAGGGAATCCTTGTTTAACAATAAC E G S C I - - G L Y F K R E S L F N N N K E V V Y N K D C T L K G N P C L T I T G R K L Y I I R I V L - K G I L V - Q - . . . . . . 11437 TTTCTTACCTCATCTGATAAGGACTTAAGGCAAAAGAAACTCTATAAGAAGAGGACGATG F L T S S D K D L R Q K K L Y K K R T M F L P H L I R T - G K R N S I R R G R C L S Y L I - - G L K A K E T L - E E D D . . . . . . 11497 CTGATGAAGAATCCCACGACTTCACATAGAGAGAAAAGTGAGAATTATTCATCAAACTAA L M K N P T T S H R E K S E N Y S S N - - - R I P R L H I E R K V R I I H Q T K A D E E S H D F T - R E K - E L F I K L . . . . . . 11557 AGTCTTCAAGATCAATAGGTTTGCTACGTTTAAAACGTTCTTGAGTGAGAAGGTTTTTAA S L Q D Q - V C Y V - N V L E - E G F - V F K I N R F A T F K T F L S E K V F N K S S R S I G L L R L K R S - V R R F L . . . . . . 11617 CGTGTAGAACTATCTTCTTGTTTTGTTCTTGATTGTAATTTACAGTTTATTATACAAAGG R V E L S S C F V L D C N L Q F I I Q R V - N Y L L V L F L I V I Y S L L Y K G T C R T I F L F C S - L - F T V Y Y T K . . . . 11677 GTGGGTTTGGCTCTTTGTAGGGTTGAGTTTTCGTGAG V G L A L C R V E F S - W V W L F V G L S F R E G G F G S L - G - V F V Maximal non-overlapping open reading frames (>= 64 codons): none PGL 3 (+ strand): 13077 13707 AGS-1 (13077 13707) SCR (e 0.733) Exon 1 13077 13707 ( 631 n); score: 0.733 PGS (13077 13707) SGN-E212888+ 3-phase translation of AGS-1 (+strand): . . . . . . 13077 GGAATCACTTGCAGCTCCCGTCACCATCGAGTCACTGCTTTAGACATTTCAAGCATGCAA G I T C S S R H H R V T A L D I S S M Q E S L A A P V T I E S L L - T F Q A C N N H L Q L P S P S S H C F R H F K H A . . . . . . 13137 CTTTATGGTACCATTCCTCCACACCTTGGAAACCTCTCATTTATTTCATCGCTTGACATC L Y G T I P P H L G N L S F I S S L D I F M V P F L H T L E T S H L F H R L T S T L W Y H S S T P W K P L I Y F I A - H . . . . . . 13197 AGTAACAACACTTTCCATGGAGAGTTGCCACTAGAGTTGGTTCGTTTGCAGAGGTTGAAA S N N T F H G E L P L E L V R L Q R L K V T T L S M E S C H - S W F V C R G - N Q - Q H F P W R V A T R V G S F A E V E . . . . . . 13257 TTCTTTAATACTAAAAACAATAACTTCACCGGAGCCATTCCATCATTTTTAAGTTTGTTA F F N T K N N N F T G A I P S F L S L L S L I L K T I T S P E P F H H F - V C Y I L - Y - K Q - L H R S H S I I F K F V . . . . . . 13317 CCAAACCTACGCTTTCTGTACCTATCGAATAACCAATTTTCGGGTAAAATTCCATCCTCC P N L R F L Y L S N N Q F S G K I P S S Q T Y A F C T Y R I T N F R V K F H P P T K P T L S V P I E - P I F G - N S I L . . . . . . 13377 CTTTCCAATCTGACAAAACTGCAAGTGTTGTCAATACAGAGTAATTATATTGAAGGAGAG L S N L T K L Q V L S I Q S N Y I E G E F P I - Q N C K C C Q Y R V I I L K E R P F Q S D K T A S V V N T E - L Y - R R . . . . . . 13437 ATCCCTCAAGAACTCGGTGATCTTCGTTCCTTGATTATCCTAAACCTGCAATATAATCAG I P Q E L G D L R S L I I L N L Q Y N Q S L K N S V I F V P - L S - T C N I I S D P S R T R - S S F L D Y P K P A I - S . . . . . . 13497 CTTAGTGGCTCTATACCATCTTCAATCTTTGACATCACTACAATGCAAGTAATTGCTCTT L S G S I P S S I F D I T T M Q V I A L L V A L Y H L Q S L T S L Q C K - L L L A - W L Y T I F N L - H H Y N A S N C S . . . . . . 13557 AGTGGCAACAATCTTACTGGAAAGATTCCAATCACGATATGTGATCATCTTCCAGACTTG S G N N L T G K I P I T I C D H L P D L V A T I L L E R F Q S R Y V I I F Q T W - W Q Q S Y W K D S N H D M - S S S R L . . . . . . 13617 GAAGGACTTTACCTCGGCAGAAACTCCCTTGATGGAGTTATTCCACCAAACCTGGAGAAA E G L Y L G R N S L D G V I P P N L E K K D F T S A E T P L M E L F H Q T W R N G R T L P R Q K L P - W S Y S T K P G E . . . . 13677 TGCAGAAAGCTTCAAATATTGGAATTGACTG C R K L Q I L E L T A E S F K Y W N - L M Q K A S N I G I D Maximal non-overlapping open reading frames (>= 64 codons): >C06HBa0054K13.1-16+_PGL-3_AGS-1_PPS_1 (13077 13706) (frame '1'; 630 bp, 210 residues) 1 GITCSSRHHR VTALDISSMQ LYGTIPPHLG NLSFISSLDI SNNTFHGELP LELVRLQRLK 61 FFNTKNNNFT GAIPSFLSLL PNLRFLYLSN NQFSGKIPSS LSNLTKLQVL SIQSNYIEGE 121 IPQELGDLRS LIILNLQYNQ LSGSIPSSIF DITTMQVIAL SGNNLTGKIP ITICDHLPDL 181 EGLYLGRNSL DGVIPPNLEK CRKLQILELT 3-phase translation of AGS-1 (-strand): . . . . . . 13707 CAGTCAATTCCAATATTTGAAGCTTTCTGCATTTCTCCAGGTTTGGTGGAATAACTCCAT Q S I P I F E A F C I S P G L V E - L H S Q F Q Y L K L S A F L Q V W W N N S I V N S N I - S F L H F S R F G G I T P . . . . . . 13647 CAAGGGAGTTTCTGCCGAGGTAAAGTCCTTCCAAGTCTGGAAGATGATCACATATCGTGA Q G S F C R G K V L P S L E D D H I S - K G V S A E V K S F Q V W K M I T Y R D S R E F L P R - S P S K S G R - S H I V . . . . . . 13587 TTGGAATCTTTCCAGTAAGATTGTTGCCACTAAGAGCAATTACTTGCATTGTAGTGATGT L E S F Q - D C C H - E Q L L A L - - C W N L S S K I V A T K S N Y L H C S D V I G I F P V R L L P L R A I T C I V V M . . . . . . 13527 CAAAGATTGAAGATGGTATAGAGCCACTAAGCTGATTATATTGCAGGTTTAGGATAATCA Q R L K M V - S H - A D Y I A G L G - S K D - R W Y R A T K L I I L Q V - D N Q S K I E D G I E P L S - L Y C R F R I I . . . . . . 13467 AGGAACGAAGATCACCGAGTTCTTGAGGGATCTCTCCTTCAATATAATTACTCTGTATTG R N E D H R V L E G S L L Q Y N Y S V L G T K I T E F L R D L S F N I I T L Y - K E R R S P S S - G I S P S I - L L C I . . . . . . 13407 ACAACACTTGCAGTTTTGTCAGATTGGAAAGGGAGGATGGAATTTTACCCGAAAATTGGT T T L A V L S D W K G R M E F Y P K I G Q H L Q F C Q I G K G G W N F T R K L V D N T C S F V R L E R E D G I L P E N W . . . . . . 13347 TATTCGATAGGTACAGAAAGCGTAGGTTTGGTAACAAACTTAAAAATGATGGAATGGCTC Y S I G T E S V G L V T N L K M M E W L I R - V Q K A - V W - Q T - K - W N G S L F D R Y R K R R F G N K L K N D G M A . . . . . . 13287 CGGTGAAGTTATTGTTTTTAGTATTAAAGAATTTCAACCTCTGCAAACGAACCAACTCTA R - S Y C F - Y - R I S T S A N E P T L G E V I V F S I K E F Q P L Q T N Q L - P V K L L F L V L K N F N L C K R T N S . . . . . . 13227 GTGGCAACTCTCCATGGAAAGTGTTGTTACTGATGTCAAGCGATGAAATAAATGAGAGGT V A T L H G K C C Y - C Q A M K - M R G W Q L S M E S V V T D V K R - N K - E V S G N S P W K V L L L M S S D E I N E R . . . . . . 13167 TTCCAAGGTGTGGAGGAATGGTACCATAAAGTTGCATGCTTGAAATGTCTAAAGCAGTGA F Q G V E E W Y H K V A C L K C L K Q - S K V W R N G T I K L H A - N V - S S D F P R C G G M V P - S C M L E M S K A V . . . . 13107 CTCGATGGTGACGGGAGCTGCAAGTGATTCC L D G D G S C K - F S M V T G A A S D S T R W - R E L Q V I Maximal non-overlapping open reading frames (>= 64 codons): >C06HBa0054K13.1-16-_PGL-3_AGS-1_PPS_1 (13420 13139) (frame '0'; 279 bp, 93 residues) 1 LLCIDNTCSF VRLEREDGIL PENWLFDRYR KRRFGNKLKN DGMAPVKLLF LVLKNFNLCK 61 RTNSSGNSPW KVLLLMSSDE INERFPRCGG MVP- PGL 4 (+ strand): 14204 20267 AGS-1 (14204 14820) SCR (e 0.977) Exon 1 14204 14820 ( 617 n); score: 0.977 PGS (14204 14820) SGN-E288383+ 3-phase translation of AGS-1 (+strand): . . . . . . 14204 TCAACTTGTGGGGGAATAATTTTGTCAGCGATTCAACATTGAGCTTCCTTGAATCATTGA S T C G G I I L S A I Q H - A S L N H - Q L V G E - F C Q R F N I E L P - I I D N L W G N N F V S D S T L S F L E S L . . . . . . 14264 CAAACTGTAGGAATCTAAGAGTACTCACGCTTGGTGGTAATCCGTTGGATGGTGTTTTGC Q T V G I - E Y S R L V V I R W M V F C K L - E S K S T H A W W - S V G W C F A T N C R N L R V L T L G G N P L D G V L . . . . . . 14324 CTGCATCTGTTGGTAATTTCTCAAACTCCTTGCAAATTTTTGAAGCATCTAAATGTAAAC L H L L V I S Q T P C K F L K H L N V N C I C W - F L K L L A N F - S I - M - T P A S V G N F S N S L Q I F E A S K C K . . . . . . 14384 TGAAGGGTGTCATTTCAAAACAAATTACTAATCTTACTGGATTGACAAGGATGAGTCTGT - R V S F Q N K L L I L L D - Q G - V C E G C H F K T N Y - S Y W I D K D E S V L K G V I S K Q I T N L T G L T R M S L . . . . . . 14444 CGAACAATCAGTTGATAGGTCATATTCCAAAAACAGTGCAAGGAATGCTGAACCTTCAAG R T I S - - V I F Q K Q C K E C - T F K E Q S V D R S Y S K N S A R N A E P S R S N N Q L I G H I P K T V Q G M L N L Q . . . . . . 14504 AACTTTACCTAGGAAGCAACAAGTTAGAAGGAGCCATACCAGATGTTATCTGCAGTTTAC N F T - E A T S - K E P Y Q M L S A V Y T L P R K Q Q V R R S H T R C Y L Q F T E L Y L G S N K L E G A I P D V I C S L . . . . . . 14564 AGTATCTTGGTGCATTAGAATTGTCAGAAAATCAATTTTCTAGTTCCGTTCCACCATGCT S I L V H - N C Q K I N F L V P F H H A V S W C I R I V R K S I F - F R S T M L Q Y L G A L E L S E N Q F S S S V P P C . . . . . . 14624 TAGGGAATGTTACTAGTTTGAGGACACTCTATCTAGATAACAACAAGCTGGATTCTAGAT - G M L L V - G H S I - I T T S W I L D R E C Y - F E D T L S R - Q Q A G F - I L G N V T S L R T L Y L D N N K L D S R . . . . . . 14684 TACCTGCAAGATTGGGGGGACTTCAAAACATCATAGAGTTCAATATTTCATCCAATTATT Y L Q D W G D F K T S - S S I F H P I I T C K I G G T S K H H R V Q Y F I Q L F L P A R L G G L Q N I I E F N I S S N Y . . . . . . 14744 TGAGTGGAGAAATTCCGCTAGAGAGCGGAAACTTGAAGGGTGCAACACTGATTGATCTGT - V E K F R - R A E T - R V Q H - L I C E W R N S A R E R K L E G C N T D - S V L S G E I P L E S G N L K G A T L I D L . . 14804 CAAATAATTATTTTTCT Q I I I F K - L F F S N N Y F S Maximal non-overlapping open reading frames (>= 64 codons): >C06HBa0054K13.1-16+_PGL-4_AGS-1_PPS_1 (14206 14820) (frame '0'; 615 bp, 205 residues) 1 NLWGNNFVSD STLSFLESLT NCRNLRVLTL GGNPLDGVLP ASVGNFSNSL QIFEASKCKL 61 KGVISKQITN LTGLTRMSLS NNQLIGHIPK TVQGMLNLQE LYLGSNKLEG AIPDVICSLQ 121 YLGALELSEN QFSSSVPPCL GNVTSLRTLY LDNNKLDSRL PARLGGLQNI IEFNISSNYL 181 SGEIPLESGN LKGATLIDLS NNYFS 3-phase translation of AGS-1 (-strand): . . . . . . 14820 AGAAAAATAATTATTTGACAGATCAATCAGTGTTGCACCCTTCAAGTTTCCGCTCTCTAG R K I I I - Q I N Q C C T L Q V S A L - E K - L F D R S I S V A P F K F P L S S K N N Y L T D Q S V L H P S S F R S L . . . . . . 14760 CGGAATTTCTCCACTCAAATAATTGGATGAAATATTGAACTCTATGATGTTTTGAAGTCC R N F S T Q I I G - N I E L Y D V L K S G I S P L K - L D E I L N S M M F - S P A E F L H S N N W M K Y - T L - C F E V . . . . . . 14700 CCCCAATCTTGCAGGTAATCTAGAATCCAGCTTGTTGTTATCTAGATAGAGTGTCCTCAA P Q S C R - S R I Q L V V I - I E C P Q P N L A G N L E S S L L L S R - S V L K P P I L Q V I - N P A C C Y L D R V S S . . . . . . 14640 ACTAGTAACATTCCCTAAGCATGGTGGAACGGAACTAGAAAATTGATTTTCTGACAATTC T S N I P - A W W N G T R K L I F - Q F L V T F P K H G G T E L E N - F S D N S N - - H S L S M V E R N - K I D F L T I . . . . . . 14580 TAATGCACCAAGATACTGTAAACTGCAGATAACATCTGGTATGGCTCCTTCTAACTTGTT - C T K I L - T A D N I W Y G S F - L V N A P R Y C K L Q I T S G M A P S N L L L M H Q D T V N C R - H L V W L L L T C . . . . . . 14520 GCTTCCTAGGTAAAGTTCTTGAAGGTTCAGCATTCCTTGCACTGTTTTTGGAATATGACC A S - V K F L K V Q H S L H C F W N M T L P R - S S - R F S I P C T V F G I - P C F L G K V L E G S A F L A L F L E Y D . . . . . . 14460 TATCAACTGATTGTTCGACAGACTCATCCTTGTCAATCCAGTAAGATTAGTAATTTGTTT Y Q L I V R Q T H P C Q S S K I S N L F I N - L F D R L I L V N P V R L V I C F L S T D C S T D S S L S I Q - D - - F V . . . . . . 14400 TGAAATGACACCCTTCAGTTTACATTTAGATGCTTCAAAAATTTGCAAGGAGTTTGAGAA - N D T L Q F T F R C F K N L Q G V - E E M T P F S L H L D A S K I C K E F E K L K - H P S V Y I - M L Q K F A R S L R . . . . . . 14340 ATTACCAACAGATGCAGGCAAAACACCATCCAACGGATTACCACCAAGCGTGAGTACTCT I T N R C R Q N T I Q R I T T K R E Y S L P T D A G K T P S N G L P P S V S T L N Y Q Q M Q A K H H P T D Y H Q A - V L . . . . . . 14280 TAGATTCCTACAGTTTGTCAATGATTCAAGGAAGCTCAATGTTGAATCGCTGACAAAATT - I P T V C Q - F K E A Q C - I A D K I R F L Q F V N D S R K L N V E S L T K L L D S Y S L S M I Q G S S M L N R - Q N . . 14220 ATTCCCCCACAAGTTGA I P P Q V F P H K L Y S P T S - Maximal non-overlapping open reading frames (>= 64 codons): >C06HBa0054K13.1-16-_PGL-4_AGS-1_PPS_1 (14450 14205) (frame '2'; 246 bp, 82 residues) 1 LFDRLILVNP VRLVICFEMT PFSLHLDASK ICKEFEKLPT DAGKTPSNGL PPSVSTLRFL 61 QFVNDSRKLN VESLTKLFPH KL AGS-2 (14234 14264,15640 15668,16001 16005,17330 17426,17563 17787) SCR (e 0.742 d 0.000 a 0.999,e 0.621 d 0.000 a 0.716,e 0.600 d 0.900 a 0.000,e 0.794 d 0.000 a 0.000,e 0.924) Exon 1 14234 14264 ( 31 n); score: 0.742 Intron 1 14265 15639 (1375 n); Pd: 0.000 Pa: 0.999 Exon 2 15640 15668 ( 29 n); score: 0.621 Intron 2 15669 16000 ( 332 n); Pd: 0.000 Pa: 0.716 Exon 3 16001 16005 ( 5 n); score: 0.600 Intron 3 16006 17329 (1324 n); Pd: 0.900 Pa: 0.000 Exon 4 17330 17426 ( 97 n); score: 0.794 Intron 4 17427 17562 ( 136 n); Pd: 0.000 Pa: 0.000 Exon 5 17563 17787 ( 225 n); score: 0.924 PGS (14234 14264,15640 15668,16001 16005,17330 17426,17563 17787) SGN-E543331+ 3-phase translation of AGS-2 (+strand): . . . . : . . : 14234 ATTCAACATTGAGCTTCCTTGAATCATTGAC : AGATTGGATGTAATGATAGATGTTGCATC : I Q H - A S L N H - : Q I G C N D R C C I : F N I E L P - I I D : R L D V M I D V A S : S T L S F L E S L T : D W M - - - M L H : . : . . . . . 16001 TTTTG : TGTTGGGTTTTATTTTCCCTAAATTTCTTATCATAAATAGGTTTTCCTTTAAGGG F C : V G F Y F P - I S Y H K - V F L - G F : V L G F I F P K F L I I N R F S F K G L L : C W V L F S L N F L S - I G F P L R . . . . . : . 17385 GAAGGTTTTGATTGACTAATCATTTTCTTGTAGGAAAAGGTT : CCCATGTATTCCGAGTGA E G F D - L I I F L - E K V : P M Y S E - K V L I D - S F S C R K R F : P C I P S E G R F - L T N H F L V G K G : S H V F R V . . . . . . 17581 ATTGGTTGAGGTTGTTTCTCTCTGTATTTTGTACTCTCATATTTATAGTGGATTGCTCAT I G - G C F S L Y F V L S Y L - W I A H L V E V V S L C I L Y S H I Y S G L L I N W L R L F L S V F C T L I F I V D C S . . . . . . 17641 CTCCTTTGTGGACGTAGGTCGATTGACCGAACCACATTAAATCTTTGTGTGTTTTGGTAT L L C G R R S I D R T T L N L C V F W Y S F V D V G R L T E P H - I F V C F G I S P L W T - V D - P N H I K S L C V L V . . . . . . 17701 ATTTCTCGTTGTCTTCTTACTCGTGGTCTTTTGAGGTTTGCTTTGCTAGCTTCCGCGTTT I S R C L L T R G L L R F A L L A S A F F L V V F L L V V F - G L L C - L P R L Y F S L S S Y S W S F E V C F A S F R V . . . 17761 ACACCTGCTGATTTTCGGTCCTAACAA T P A D F R S - Q H L L I F G P N Y T C - F S V L T Maximal non-overlapping open reading frames (>= 64 codons): none AGS-3 (15647 15856,15955 16304,16804 16850,17124 17130,17284 17301,17629 17638,18160 18194,19534 19632) SCR (e 0.829 d 0.999 a 0.805,e 0.819 d 0.694 a 0.000,e 0.574 d 0.000 a 0.778,e 0.857 d 0.900 a 1.000,e 0.500 d 0.000 a 0.915,e 0.600 d 0.900 a 0.000,e 0.686 d 0.000 a 0.000,e 0.737) Exon 1 15647 15856 ( 210 n); score: 0.829 Intron 1 15857 15954 ( 98 n); Pd: 0.999 Pa: 0.805 Exon 2 15955 16304 ( 350 n); score: 0.819 Intron 2 16305 16803 ( 499 n); Pd: 0.694 Pa: 0.000 Exon 3 16804 16850 ( 47 n); score: 0.574 Intron 3 16851 17123 ( 273 n); Pd: 0.000 Pa: 0.778 Exon 4 17124 17130 ( 7 n); score: 0.857 Intron 4 17131 17283 ( 153 n); Pd: 0.900 Pa: 1.000 Exon 5 17284 17301 ( 18 n); score: 0.500 Intron 5 17302 17628 ( 327 n); Pd: 0.000 Pa: 0.915 Exon 6 17629 17638 ( 10 n); score: 0.600 Intron 6 17639 18159 ( 521 n); Pd: 0.900 Pa: 0.000 Exon 7 18160 18194 ( 35 n); score: 0.686 Intron 7 18195 19533 (1339 n); Pd: 0.000 Pa: 0.000 Exon 8 19534 19632 ( 99 n); score: 0.737 PGS (15647 15856,15955 16031) SGN-E395576+ PGS (15679 15856,15955 16230) SGN-E314138+ PGS (15703 15856,15955 16304,16804 16850,17124 17130,17284 17301,17629 17638,18160 18194,19534 19632) SGN-E541708- 3-phase translation of AGS-3 (+strand): . . . . . . 15647 ATGTAATGATAGATGTTGCATCTGCAATGAACTATCTCCACAATGGCTATTCAACGCCTG M - - - M L H L Q - T I S T M A I Q R L C N D R C C I C N E L S P Q W L F N A C V M I D V A S A M N Y L H N G Y S T P . . . . . . 15707 TAGTGCATTGTGACTTGAAACCAAGTAATGTCTTGTTAGATGAAGAAATGGTTGCTCATG - C I V T - N Q V M S C - M K K W L L M S A L - L E T K - C L V R - R N G C S C V V H C D L K P S N V L L D E E M V A H . . . . . . 15767 TAAGTGATTTTGGCATTGCAAAAATGTTAGGTGCAGGGGAGGCTTTTGTTCAAACAAGGA - V I L A L Q K C - V Q G R L L F K Q G K - F W H C K N V R C R G G F C S N K D V S D F G I A K M L G A G E A F V Q T R . . . : . . . 15827 CAGTTGCAACCATTGGATATATTGCTCCAG : AGTATGGACAAGATGGAATAGTATCCACGA Q L Q P L D I L L Q : S M D K M E - Y P R S C N H W I Y C S R : V W T R W N S I H E T V A T I G Y I A P : E Y G Q D G I V S T . . . . . . 15985 GTTGTGATGTTTATAGTTTTGGTATCCTGATGATGGAGACGTTCACACGAACAAGACCAA V V M F I V L V S - - W R R S H E Q D Q L - C L - F W Y P D D G D V H T N K T K S C D V Y S F G I L M M E T F T R T R P . . . . . . 16045 GTGATGACATATTTACTGGAGACTTGAGCATACAAAGCTGGATTAGTGATTCCTTTCCGG V M T Y L L E T - A Y K A G L V I P F R - - H I Y W R L E H T K L D - - F L S G S D D I F T G D L S I Q S W I S D S F P . . . . . . 16105 GTGAACTTCACAAGGTGGTGGATTCTAATTTGGTACAGCCCGGAGATGAACAAATCGCTG V N F T R W W I L I W Y S P E M N K S L - T S Q G G G F - F G T A R R - T N R C G E L H K V V D S N L V Q P G D E Q I A . . . . . . 16165 CAAAGATGCAATGTTTGTCATCTGTCATGGAATTAGCTTTGAAGTGCACTTTAGTGAGAC Q R C N V C H L S W N - L - S A L - - D K D A M F V I C H G I S F E V H F S E T A K M Q C L S S V M E L A L K C T L V R . . . . . . 16225 CTGATGCAAGAATTAGCATGAAGGATGCTCTTTCAACACTCAAAAAGATGAGGCTACAGC L M Q E L A - R M L F Q H S K R - G Y S - C K N - H E G C S F N T Q K D E A T A P D A R I S M K D A L S T L K K M R L Q . . : . . . . 16285 TTGTTAGTAGTCGGCATTAG : AAAATGCATACTGATTTAACTGCATCTAAAGAAGAAGTTG L L V V G I R : K C I L I - L H L K K K L C - - S A L : E N A Y - F N C I - R R S W L V S S R H - : K M H T D L T A S K E E V . : . : . . : . : . 16844 GTTGATT : ATGGCTA : GAAATAGGAGTAGACGAT : TGGATTGCTC : TATCAATTGTTTTCACAG V D : Y G - : K - E - T I : G L L : Y Q L F S Q L I : M A : R N R S R R : L D C S : I N C F H R G - L : W L : E I G V D D : W I A : L S I V F T . . : . . . . 18178 ATATAGACATCTGAAAT : CTGCAACCTTGATTTCAAGGTCCTGGTGTTGGAATACATGCCC I - T S E I : C N L D F K V L V L E Y M P Y R H L K : S A T L I S R S W C W N T C P D I D I - N : L Q P - F Q G P G V G I H A . . . . . . 19577 AATGGGACACTTGATAAATGGTTATATTCTCACAACTTGTTCTTAAACTTATTGCA N G T L D K W L Y S H N L F L N L L M G H L I N G Y I L T T C S - T Y C Q W D T - - M V I F S Q L V L K L I A Maximal non-overlapping open reading frames (>= 64 codons): >C06HBa0054K13.1-16+_PGL-4_AGS-3_PPS_1 (15649 15856,15955 16304) (frame '0'; 555 bp, 185 residues) 1 VMIDVASAMN YLHNGYSTPV VHCDLKPSNV LLDEEMVAHV SDFGIAKMLG AGEAFVQTRT 61 VATIGYIAPE YGQDGIVSTS CDVYSFGILM METFTRTRPS DDIFTGDLSI QSWISDSFPG 121 ELHKVVDSNL VQPGDEQIAA KMQCLSSVME LALKCTLVRP DARISMKDAL STLKKMRLQL 181 VSSRH- AGS-4 (19641 19849,19971 20048) SCR (e 0.823 d 0.947 a 0.000,e 0.814) Exon 1 19641 19849 ( 209 n); score: 0.823 Intron 1 19850 19970 ( 121 n); Pd: 0.947 Pa: 0.000 Exon 2 19971 20048 ( 78 n); score: 0.814 PGS (19641 19849,19971 20048) SGN-E395576+ 3-phase translation of AGS-4 (+strand): . . . . . . 19641 ATATAATGATAGATGTTGCATCTGCAATGGACTATCTCCACAATGGCTATTCAACGCCTG I - - - M L H L Q W T I S T M A I Q R L Y N D R C C I C N G L S P Q W L F N A C I M I D V A S A M D Y L H N G Y S T P . . . . . . 19701 TGGTGCATTGTGACTTGAAGCCAAGCAATATGTTGCTAGATCAAGAAATGGTTGGTCAAG W C I V T - S Q A I C C - I K K W L V K G A L - L E A K Q Y V A R S R N G W S S V V H C D L K P S N M L L D Q E M V G Q . . . . . . 19761 TTAGTGATTTTGGCATTGCAAAATTGTTAGATGTAGGGGAGGCTTTCGTTCAAACAAGAA L V I L A L Q N C - M - G R L S F K Q E - - F W H C K I V R C R G G F R S N K N V S D F G I A K L L D V G E A F V Q T R . . . : . . . 19821 CAACTGCAACCATCGGATATATTGCTCCA : GTGTATGGACAAGATGGAATAGTATCCACGA Q L Q P S D I L L Q : C M D K M E - Y P R N C N H R I Y C S : S V W T R W N S I H E T T A T I G Y I A P : V Y G Q D G I V S T . . . . . 20002 GTTGTGATGTTTATAGTTTTGGCATCCTAATGATGGAGAGGTTCACA V V M F I V L A S - - W R G S L - C L - F W H P N D G E V H S C D V Y S F G I L M M E R F T Maximal non-overlapping open reading frames (>= 64 codons): >C06HBa0054K13.1-16+_PGL-4_AGS-4_PPS_1 (19643 19849,19971 20048) (frame '0'; 285 bp, 95 residues) 1 IMIDVASAMD YLHNGYSTPV VHCDLKPSNM LLDQEMVGQV SDFGIAKLLD VGEAFVQTRT 61 TATIGYIAPV YGQDGIVSTS CDVYSFGILM MERFT AGS-5 (20140 20267) SCR (e 0.887) Exon 1 20140 20267 ( 128 n); score: 0.887 PGS (20140 20267) SGN-E540411- 3-phase translation of AGS-5 (+strand): . . . . . . 20140 CGATAGGTCGAAAAGGGATAGAAAATTACTTATAAAATAAGTTGAGGGGGTAATAGGACC R - V E K G - K I T Y K I S - G G N R T D R S K R D R K L L I K - V E G V I G P I G R K G I E N Y L - N K L R G - - D . . . . . . 20200 TTAGTGTTGTATAAGTGTGTCTCTGAAATTTCGGACATAGGTTGAGGGGGTACCTGTGCA L V L Y K C V S E I S D I G - G G T C A - C C I S V S L K F R T - V E G V P V H L S V V - V C L - N F G H R L R G Y L C . 20260 TTTTCCCT F S F P I F P Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-5 (-strand): . . . . . . 20267 AGGGAAAATGCACAGGTACCCCCTCAACCTATGTCCGAAATTTCAGAGACACACTTATAC R E N A Q V P P Q P M S E I S E T H L Y G K M H R Y P L N L C P K F Q R H T Y T G K C T G T P S T Y V R N F R D T L I . . . . . . 20207 AACACTAAGGTCCTATTACCCCCTCAACTTATTTTATAAGTAATTTTCTATCCCTTTTCG N T K V L L P P Q L I L - V I F Y P F S T L R S Y Y P L N L F Y K - F S I P F R Q H - G P I T P S T Y F I S N F L S L F . 20147 ACCTATCG T Y P I D L S Maximal non-overlapping open reading frames (>= 64 codons): none PGL 5 (- strand): 20786 17330 AGS-1 (17995 17985,17794 17330) SCR (e 0.909 d 0.908 a 0.000,e 0.918) Exon 1 17995 17985 ( 11 n); score: 0.909 Intron 1 17984 17795 ( 190 n); Pd: 0.908 Pa: 0.000 Exon 2 17794 17330 ( 465 n); score: 0.918 PGS (17786 17330) SGN-E211090- PGS (17780 17330) SGN-E206285+ PGS (17765 17330) SGN-E205772- PGS (17731 17330) SGN-E205773- PGS (17695 17372) SGN-E243194+ PGS (17780 17519) SGN-E206496+ PGS (17780 17521) SGN-E207598+ PGS (17786 17539) SGN-E389613+ PGS (17995 17985,17794 17565) SGN-E271645+ PGS (17780 17565) SGN-E370622+ 3-phase translation of AGS-1 (-strand): . . : . . . . 17995 AATGACTCTAA : CATCATTTTGTTAGGACCGAAAATCAGCAGGTGTAAACGCGGAAGCTAG N D S N : I I L L G P K I S R C K R G S - M T L : T S F C - D R K S A G V N A E A S - L - : H H F V R T E N Q Q V - T R K L . . . . . . 17745 CAAAGCAAACCTCAAAAGACCACGAGTAAGAAGACAACGAGAAATATACCAAAACACACA Q S K P Q K T T S K K T T R N I P K H T K A N L K R P R V R R Q R E I Y Q N T Q A K Q T S K D H E - E D N E K Y T K T H . . . . . . 17685 AAGATTTAATGTGGTTCGGTCAATCGACCTACGTCCACAAAGGAGATGAGCAATCCACTA K I - C G S V N R P T S T K E M S N P L R F N V V R S I D L R P Q R R - A I H Y K D L M W F G Q S T Y V H K G D E Q S T . . . . . . 17625 TAAATATGAGAGTACAAAATACAGAGAGAAACAACCTCAACCAATTCACTCGGAATACAT - I - E Y K I Q R E T T S T N S L G I H K Y E S T K Y R E K Q P Q P I H S E Y M I N M R V Q N T E R N N L N Q F T R N T . . . . . . 17565 GGGAGGTTCACACAAGTGATAATGTATCCAACTTGTGACCCATAAATTCTCTCCCTAACC G R F T Q V I M Y P T C D P - I L S L T G G S H K - - C I Q L V T H K F S P - P W E V H T S D N V S N L - P I N S L P N . . . . . . 17505 AAAACTCTCAAAGCTCTTAAGACTACATTGTGAATGCTGACTAAGTTAGAAGGAACATTT K T L K A L K T T L - M L T K L E G T F K L S K L L R L H C E C - L S - K E H F Q N S Q S S - D Y I V N A D - V R R N I . . . . . . 17445 CTCTATTTATAGAGTCCTAAACCTTTTCCTACAAGAAAATGATTAGTCAATCAAAACCTT L Y L - S P K P F P T R K - L V N Q N L S I Y R V L N L F L Q E N D - S I K T F S L F I E S - T F S Y K K M I S Q S K P . . . . . . 17385 CCCCTTAAAGGAAAACCTATTTATGATAAGAAATTTAGGGAAAATAAAACCCAACA P L K G K P I Y D K K F R E N K T Q P L K E N L F M I R N L G K I K P N S P - R K T Y L - - E I - G K - N P T Maximal non-overlapping open reading frames (>= 64 codons): none AGS-2 (20786 20741,20379 20354,18443 18430,17780 17670) SCR (e 0.717 d 0.000 a 0.000,e 0.692 d 0.312 a 0.908,e 0.643 d 0.123 a 0.978,e 0.946) Exon 1 20786 20741 ( 46 n); score: 0.717 Intron 1 20740 20380 ( 361 n); Pd: 0.000 Pa: 0.000 Exon 2 20379 20354 ( 26 n); score: 0.692 Intron 2 20353 18444 (1910 n); Pd: 0.312 Pa: 0.908 Exon 3 18443 18430 ( 14 n); score: 0.643 Intron 3 18429 17781 ( 649 n); Pd: 0.123 Pa: 0.978 Exon 4 17780 17670 ( 111 n); score: 0.946 PGS (20786 20741,20379 20354,18443 18430,17780 17670) SGN-E544264- 3-phase translation of AGS-2 (-strand): . . . . . : . 20786 ACTAGTTCAAATAAGACAATTTTGTGTTGGTTATAAATAGTTTATA : TCAAGGTGTGTTTC T S S N K T I L C W L - I V Y : I K V C F L V Q I R Q F C V G Y K - F I : S R C V S - F K - D N F V L V I N S L Y : Q G V F . . : . : . . . 20365 ACTAATCATTAG : ATATGTGATTGCAG : GACCGAAAATCAGCAGGTGTAAACGCGGAAGCTA T N H - : I C D C R : T E N Q Q V - T R K L L I I R : Y V I A : G P K I S R C K R G S - H - S L : D M - L Q : D R K S A G V N A E A . . . . . . 17746 GCAAAGCAAACCTCAAAAGACCACGAGTAAGAAGACAACGAGAAATATACCAAAACACAC A K Q T S K D H E - E D N E K Y T K T H Q S K P Q K T T S K K T T R N I P K H T S K A N L K R P R V R R Q R E I Y Q N T . . 17686 AAAGATTTAATGTGGTT K D L M W K I - C G Q R F N V V Maximal non-overlapping open reading frames (>= 64 codons): none AGS-3 (18344 18311,17780 17692) SCR (e 0.706 d 0.000 a 0.978,e 0.910) Exon 1 18344 18311 ( 34 n); score: 0.706 Intron 1 18310 17781 ( 530 n); Pd: 0.000 Pa: 0.978 Exon 2 17780 17692 ( 89 n); score: 0.910 PGS (18344 18311,17780 17692) SGN-E329886- 3-phase translation of AGS-3 (-strand): . . . . : . . 18344 CAGAGAATTGATAAACAAAGTCACACACATGTAG : GACCGAAAATCAGCAGGTGTAAACGC Q R I D K Q S H T H V : G P K I S R C K R R E L I N K V T H M - : D R K S A G V N A E N - - T K S H T C R : T E N Q Q V - T . . . . . . 17754 GGAAGCTAGCAAAGCAAACCTCAAAAGACCACGAGTAAGAAGACAACGAGAAATATACCA G S - Q S K P Q K T T S K K T T R N I P E A S K A N L K R P R V R R Q R E I Y Q R K L A K Q T S K D H E - E D N E K Y T . 17694 AAA K K Maximal non-overlapping open reading frames (>= 64 codons): none PGL 6 (+ strand): 21165 21700 AGS-1 (21165 21700) SCR (e 0.919) Exon 1 21165 21700 ( 536 n); score: 0.919 PGS (21165 21617) SGN-E243215- PGS (21169 21491) SGN-E578389+ PGS (21334 21700) SGN-E542827- 3-phase translation of AGS-1 (+strand): . . . . . . 21165 TTATATATAAAAGGGAAAAAGGTCTGATATACCCCTCAACTTTGTCATTTGGAGCTCATA L Y I K G K K V - Y T P Q L C H L E L I Y I - K G K R S D I P L N F V I W S S Y I Y K R E K G L I Y P S T L S F G A H . . . . . . 21225 TACCCCTCGTTATAAAAGTGGCTCATATATGCCCTTACCGTTATACAAACGGCTCACATT Y P S L - K W L I Y A L T V I Q T A H I T P R Y K S G S Y M P L P L Y K R L T F I P L V I K V A H I C P Y R Y T N G S H . . . . . . 21285 TACCCCTGCTGTTATAAAATGACTCACATATACCCTTCATTTAACGGAAGTTAAAAAATT Y P C C Y K M T H I Y P S F N G S - K I T P A V I K - L T Y T L H L T E V K K F L P L L L - N D S H I P F I - R K L K N . . . . . . 21345 TATTTTAAATTTATATTTATTACTTTTAATTTTTTTTAAAAAAAATTATTTAGAGATATA Y F K F I F I T F N F F - K K L F R D I I L N L Y L L L L I F F K K N Y L E I Y L F - I Y I Y Y F - F F L K K I I - R Y . . . . . . 21405 TATGATTCTTCTATCAAAGTTCAATGTATATTTTAATTTTTTTCATACATAAATTATTTT Y D S S I K V Q C I F - F F S Y I N Y F M I L L S K F N V Y F N F F H T - I I F I - F F Y Q S S M Y I L I F F I H K L F . . . . . . 21465 TTGACTTCATTTATTATAATTATTTGAGTTTCTTATTCTTATTTTGTTTTTTTCTTTCAT L T S F I I I I - V S Y S Y F V F F F H - L H L L - L F E F L I L I L F F S F I F D F I Y Y N Y L S F L F L F C F F L S . . . . . . 21525 TCCTTAGTTTAAATAAAAAAATTAAACTATTTTTTTACTGTGTATTGTAATTTAATTTCG S L V - I K K L N Y F F T V Y C N L I S P - F K - K N - T I F L L C I V I - F R F L S L N K K I K L F F Y C V L - F N F . . . . . . 21585 TATTCGAAGAAAAAATTTGGTCATCTACAATAAGTTTTACAAGAATATTAGTGAAACATA Y S K K K F G H L Q - V L Q E Y - - N I I R R K N L V I Y N K F Y K N I S E T - V F E E K I W S S T I S F T R I L V K H . . . . . . 21645 AATAAATTTGATTATCAAAATAATAATTATAAATTAGTCATTGAAATACAAAAAAA N K F D Y Q N N N Y K L V I E I Q K I N L I I K I I I I N - S L K Y K K K - I - L S K - - L - I S H - N T K K Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-1 (-strand): . . . . . . 21700 TTTTTTTGTATTTCAATGACTAATTTATAATTATTATTTTGATAATCAAATTTATTTATG F F C I S M T N L - L L F - - S N L F M F F V F Q - L I Y N Y Y F D N Q I Y L C F L Y F N D - F I I I I L I I K F I Y . . . . . . 21640 TTTCACTAATATTCTTGTAAAACTTATTGTAGATGACCAAATTTTTTCTTCGAATACGAA F H - Y S C K T Y C R - P N F F F E Y E F T N I L V K L I V D D Q I F S S N T K V S L I F L - N L L - M T K F F L R I R . . . . . . 21580 ATTAAATTACAATACACAGTAAAAAAATAGTTTAATTTTTTTATTTAAACTAAGGAATGA I K L Q Y T V K K - F N F F I - T K E - L N Y N T Q - K N S L I F L F K L R N E N - I T I H S K K I V - F F Y L N - G M . . . . . . 21520 AAGAAAAAAACAAAATAAGAATAAGAAACTCAAATAATTATAATAAATGAAGTCAAAAAA K K K T K - E - E T Q I I I I N E V K K R K K Q N K N K K L K - L - - M K S K N K E K N K I R I R N S N N Y N K - S Q K . . . . . . 21460 TAATTTATGTATGAAAAAAATTAAAATATACATTGAACTTTGATAGAAGAATCATATATA - F M Y E K N - N I H - T L I E E S Y I N L C M K K I K I Y I E L - - K N H I Y I I Y V - K K L K Y T L N F D R R I I Y . . . . . . 21400 TCTCTAAATAATTTTTTTTAAAAAAAATTAAAAGTAATAAATATAAATTTAAAATAAATT S L N N F F - K K L K V I N I N L K - I L - I I F F K K N - K - - I - I - N K F I S K - F F L K K I K S N K Y K F K I N . . . . . . 21340 TTTTAACTTCCGTTAAATGAAGGGTATATGTGAGTCATTTTATAACAGCAGGGGTAAATG F - L P L N E G Y M - V I L - Q Q G - M F N F R - M K G I C E S F Y N S R G K C F L T S V K - R V Y V S H F I T A G V N . . . . . . 21280 TGAGCCGTTTGTATAACGGTAAGGGCATATATGAGCCACTTTTATAACGAGGGGTATATG - A V C I T V R A Y M S H F Y N E G Y M E P F V - R - G H I - A T F I T R G I - V S R L Y N G K G I Y E P L L - R G V Y . . . . . . 21220 AGCTCCAAATGACAAAGTTGAGGGGTATATCAGACCTTTTTCCCTTTTATATATAA S S K - Q S - G V Y Q T F F P F I Y A P N D K V E G Y I R P F S L L Y I E L Q M T K L R G I S D L F P F Y I - Maximal non-overlapping open reading frames (>= 64 codons): none PGL 7 (+ strand): 22430 23060 AGS-1 (22430 23060) SCR (e 0.730) Exon 1 22430 23060 ( 631 n); score: 0.730 PGS (22430 23060) SGN-E212888+ 3-phase translation of AGS-1 (+strand): . . . . . . 22430 GGAATCACTTGCAGCTCTCGACACCATCGAGTCACTGCTTTAGACATTTCAAGCATGCAA G I T C S S R H H R V T A L D I S S M Q E S L A A L D T I E S L L - T F Q A C N N H L Q L S T P S S H C F R H F K H A . . . . . . 22490 CTTCATGGTACCATTCCTCCACACCTCGGAAACCTGTCATTTCTTTCTTCCCTTGACATC L H G T I P P H L G N L S F L S S L D I F M V P F L H T S E T C H F F L P L T S T S W Y H S S T P R K P V I S F F P - H . . . . . . 22550 AGTAACAACACTTTTCATGGAGATTTGCCACAAGAATTGGCTCGTCTGCAGAGGTTGAAA S N N T F H G D L P Q E L A R L Q R L K V T T L F M E I C H K N W L V C R G - N Q - Q H F S W R F A T R I G S S A E V E . . . . . . 22610 TCGATTAATGTCACAAGCAATAACTTCACCGGAGCCATTCCATCATTTTTAAGTTTGTTA S I N V T S N N F T G A I P S F L S L L R L M S Q A I T S P E P F H H F - V C Y I D - C H K Q - L H R S H S I I F K F V . . . . . . 22670 CCAAACCTACGCTTTGTGCACCTATCAAGCAACCAATTTTCTGGGAAAATTCCATCCTCC P N L R F V H L S S N Q F S G K I P S S Q T Y A L C T Y Q A T N F L G K F H P P T K P T L C A P I K Q P I F W E N S I L . . . . . . 22730 CTTTCCAATATAACAAAGCTGCAAAGGTTATACTTGGATAGAAATTTTCTTGAAGGAGAG L S N I T K L Q R L Y L D R N F L E G E F P I - Q S C K G Y T W I E I F L K E R P F Q Y N K A A K V I L G - K F S - R R . . . . . . 22790 ATCCCTCGAGAAATCGGTGATCTTCGTTACTTGACTATCCTAGACCTGCAAATTAATCAG I P R E I G D L R Y L T I L D L Q I N Q S L E K S V I F V T - L S - T C K L I S D P S R N R - S S L L D Y P R P A N - S . . . . . . 22850 CTTAGTGGCTCTATACCACCATCCATTTTTAACATTACTACAATGCATGTGATTGCTCTT L S G S I P P S I F N I T T M H V I A L L V A L Y H H P F L T L L Q C M - L L L A - W L Y T T I H F - H Y Y N A C D C S . . . . . . 22910 ACGGGCAACAATCTTACTGGAAATCTTCCAAAAACGATATGTGATCATCTTCGAGACTTG T G N N L T G N L P K T I C D H L R D L R A T I L L E I F Q K R Y V I I F E T W Y G Q Q S Y W K S S K N D M - S S S R L . . . . . . 22970 GAAGGACTTTACCTCAGTAAAAACTCCCTAGATGGAGTTATTCCACCAAACCTGGAGAAA E G L Y L S K N S L D G V I P P N L E K K D F T S V K T P - M E L F H Q T W R N G R T L P Q - K L P R W S Y S T K P G E . . . . 23030 TGCAGAAAGCTTCAAAAATTGCAATTGGGTG C R K L Q K L Q L G A E S F K N C N W V M Q K A S K I A I G Maximal non-overlapping open reading frames (>= 64 codons): >C06HBa0054K13.1-16+_PGL-7_AGS-1_PPS_1 (22430 23059) (frame '1'; 630 bp, 210 residues) 1 GITCSSRHHR VTALDISSMQ LHGTIPPHLG NLSFLSSLDI SNNTFHGDLP QELARLQRLK 61 SINVTSNNFT GAIPSFLSLL PNLRFVHLSS NQFSGKIPSS LSNITKLQRL YLDRNFLEGE 121 IPREIGDLRY LTILDLQINQ LSGSIPPSIF NITTMHVIAL TGNNLTGNLP KTICDHLRDL 181 EGLYLSKNSL DGVIPPNLEK CRKLQKLQLG 3-phase translation of AGS-1 (-strand): . . . . . . 23060 CACCCAATTGCAATTTTTGAAGCTTTCTGCATTTCTCCAGGTTTGGTGGAATAACTCCAT H P I A I F E A F C I S P G L V E - L H T Q L Q F L K L S A F L Q V W W N N S I P N C N F - S F L H F S R F G G I T P . . . . . . 23000 CTAGGGAGTTTTTACTGAGGTAAAGTCCTTCCAAGTCTCGAAGATGATCACATATCGTTT L G S F Y - G K V L P S L E D D H I S F - G V F T E V K S F Q V S K M I T Y R F S R E F L L R - S P S K S R R - S H I V . . . . . . 22940 TTGGAAGATTTCCAGTAAGATTGTTGCCCGTAAGAGCAATCACATGCATTGTAGTAATGT L E D F Q - D C C P - E Q S H A L - - C W K I S S K I V A R K S N H M H C S N V F G R F P V R L L P V R A I T C I V V M . . . . . . 22880 TAAAAATGGATGGTGGTATAGAGCCACTAAGCTGATTAATTTGCAGGTCTAGGATAGTCA - K W M V V - S H - A D - F A G L G - S K N G W W Y R A T K L I N L Q V - D S Q L K M D G G I E P L S - L I C R S R I V . . . . . . 22820 AGTAACGAAGATCACCGATTTCTCGAGGGATCTCTCCTTCAAGAAAATTTCTATCCAAGT S N E D H R F L E G S L L Q E N F Y P S V T K I T D F S R D L S F K K I S I Q V K - R R S P I S R G I S P S R K F L S K . . . . . . 22760 ATAACCTTTGCAGCTTTGTTATATTGGAAAGGGAGGATGGAATTTTCCCAGAAAATTGGT I T F A A L L Y W K G R M E F S Q K I G - P L Q L C Y I G K G G W N F P R K L V Y N L C S F V I L E R E D G I F P E N W . . . . . . 22700 TGCTTGATAGGTGCACAAAGCGTAGGTTTGGTAACAAACTTAAAAATGATGGAATGGCTC C L I G A Q S V G L V T N L K M M E W L A - - V H K A - V W - Q T - K - W N G S L L D R C T K R R F G N K L K N D G M A . . . . . . 22640 CGGTGAAGTTATTGCTTGTGACATTAATCGATTTCAACCTCTGCAGACGAGCCAATTCTT R - S Y C L - H - S I S T S A D E P I L G E V I A C D I N R F Q P L Q T S Q F L P V K L L L V T L I D F N L C R R A N S . . . . . . 22580 GTGGCAAATCTCCATGAAAAGTGTTGTTACTGATGTCAAGGGAAGAAAGAAATGACAGGT V A N L H E K C C Y - C Q G K K E M T G W Q I S M K S V V T D V K G R K K - Q V C G K S P - K V L L L M S R E E R N D R . . . . . . 22520 TTCCGAGGTGTGGAGGAATGGTACCATGAAGTTGCATGCTTGAAATGTCTAAAGCAGTGA F R G V E E W Y H E V A C L K C L K Q - S E V W R N G T M K L H A - N V - S S D F P R C G G M V P - S C M L E M S K A V . . . . 22460 CTCGATGGTGTCGAGAGCTGCAAGTGATTCC L D G V E S C K - F S M V S R A A S D S T R W C R E L Q V I Maximal non-overlapping open reading frames (>= 64 codons): >C06HBa0054K13.1-16-_PGL-7_AGS-1_PPS_1 (22815 22564) (frame '0'; 249 bp, 83 residues) 1 RRSPISRGIS PSRKFLSKYN LCSFVILERE DGIFPENWLL DRCTKRRFGN KLKNDGMAPV 61 KLLLVTLIDF NLCRRANSCG KSP- PGL 8 (+ strand): 23563 24176 AGS-1 (23563 24176) SCR (e 0.821) Exon 1 23563 24176 ( 614 n); score: 0.821 PGS (23563 24176) SGN-E288383+ 3-phase translation of AGS-1 (+strand): . . . . . . 23563 ACTTGCTGTGGAATAATTTTGTCAGCGATTCTACATTGAGCTTCCTTGCATCATTGACAA T C C G I I L S A I L H - A S L H H - Q L A V E - F C Q R F Y I E L P C I I D K L L W N N F V S D S T L S F L A S L T . . . . . . 23623 ACTGTAGGAATCTAAGAGCACTCACGTTAGCAGGTAATCCGTTGGATGGTGTATTGCCTG T V G I - E H S R - Q V I R W M V Y C L L - E S K S T H V S R - S V G W C I A C N C R N L R A L T L A G N P L D G V L P . . . . . . 23683 CATCTGTTGGTAATTTCTCAAACTCCTTGCAAATTTTTGAAGCATATAATTGTACACTGA H L L V I S Q T P C K F L K H I I V H - I C W - F L K L L A N F - S I - L Y T E A S V G N F S N S L Q I F E A Y N C T L . . . . . . 23743 AGGGTGTCATTCCTCGAGAAATTGGTAATCTTACTGGACTGACAAGGATGAGTCTGTTTA R V S F L E K L V I L L D - Q G - V C L G C H S S R N W - S Y W T D K D E S V - K G V I P R E I G N L T G L T R M S L F . . . . . . 23803 ACAATACATTAACTGGACATATTCCAAATACTGTACATGGCATGTCGATCCTTCAAGAAC T I H - L D I F Q I L Y M A C R S F K N Q Y I N W T Y S K Y C T W H V D P S R T N N T L T G H I P N T V H G M S I L Q E . . . . . . 23863 TTTACTTATTGAACAACAAGATAGAAGGAACCATACCAGATGTTGTCTGTAATTTAAAGA F T Y - T T R - K E P Y Q M L S V I - R L L I E Q Q D R R N H T R C C L - F K E L Y L L N N K I E G T I P D V V C N L K . . . . . . 23923 GACTTGGTGCATTACTCTTGTCAAAAAATCATTTTTCTGGTTCGGTACCCTTCTGCTTAG D L V H Y S C Q K I I F L V R Y P S A - T W C I T L V K K S F F W F G T L L L R R L G A L L L S K N H F S G S V P F C L . . . . . . 23983 GGAACATTACTAGTTTGAGGATACTTCATCTATATAACAACAAGCTGGATTCTACATTAC G T L L V - G Y F I Y I T T S W I L H Y E H Y - F E D T S S I - Q Q A G F Y I T G N I T S L R I L H L Y N N K L D S T L . . . . . . 24043 CTTCAAACTTGGGGAACCTTCAAGATCTCATAGAATTAGATGTTTCATTCAATTTATTTA L Q T W G T F K I S - N - M F H S I Y L F K L G E P S R S H R I R C F I Q F I - P S N L G N L Q D L I E L D V S F N L F . . . . . . 24103 GTGGGGAAATTCCAATGGAGAGTGGAAACTTGAAGGCTGCAACACACATTGATTTGTCAA V G K F Q W R V E T - R L Q H T L I C Q W G N S N G E W K L E G C N T H - F V K S G E I P M E S G N L K A A T H I D L S . . 24163 ATAATTGTTTTTCT I I V F - L F F N N C F S Maximal non-overlapping open reading frames (>= 64 codons): >C06HBa0054K13.1-16+_PGL-8_AGS-1_PPS_1 (23565 24176) (frame '0'; 612 bp, 204 residues) 1 LLWNNFVSDS TLSFLASLTN CRNLRALTLA GNPLDGVLPA SVGNFSNSLQ IFEAYNCTLK 61 GVIPREIGNL TGLTRMSLFN NTLTGHIPNT VHGMSILQEL YLLNNKIEGT IPDVVCNLKR 121 LGALLLSKNH FSGSVPFCLG NITSLRILHL YNNKLDSTLP SNLGNLQDLI ELDVSFNLFS 181 GEIPMESGNL KAATHIDLSN NCFS 3-phase translation of AGS-1 (-strand): . . . . . . 24176 AGAAAAACAATTATTTGACAAATCAATGTGTGTTGCAGCCTTCAAGTTTCCACTCTCCAT R K T I I - Q I N V C C S L Q V S T L H E K Q L F D K S M C V A A F K F P L S I K N N Y L T N Q C V L Q P S S F H S P . . . . . . 24116 TGGAATTTCCCCACTAAATAAATTGAATGAAACATCTAATTCTATGAGATCTTGAAGGTT W N F P T K - I E - N I - F Y E I L K V G I S P L N K L N E T S N S M R S - R F L E F P H - I N - M K H L I L - D L E G . . . . . . 24056 CCCCAAGTTTGAAGGTAATGTAGAATCCAGCTTGTTGTTATATAGATGAAGTATCCTCAA P Q V - R - C R I Q L V V I - M K Y P Q P K F E G N V E S S L L L Y R - S I L K S P S L K V M - N P A C C Y I D E V S S . . . . . . 23996 ACTAGTAATGTTCCCTAAGCAGAAGGGTACCGAACCAGAAAAATGATTTTTTGACAAGAG T S N V P - A E G Y R T R K M I F - Q E L V M F P K Q K G T E P E K - F F D K S N - - C S L S R R V P N Q K N D F L T R . . . . . . 23936 TAATGCACCAAGTCTCTTTAAATTACAGACAACATCTGGTATGGTTCCTTCTATCTTGTT - C T K S L - I T D N I W Y G S F Y L V N A P S L F K L Q T T S G M V P S I L L V M H Q V S L N Y R Q H L V W F L L S C . . . . . . 23876 GTTCAATAAGTAAAGTTCTTGAAGGATCGACATGCCATGTACAGTATTTGGAATATGTCC V Q - V K F L K D R H A M Y S I W N M S F N K - S S - R I D M P C T V F G I C P C S I S K V L E G S T C H V Q Y L E Y V . . . . . . 23816 AGTTAATGTATTGTTAAACAGACTCATCCTTGTCAGTCCAGTAAGATTACCAATTTCTCG S - C I V K Q T H P C Q S S K I T N F S V N V L L N R L I L V S P V R L P I S R Q L M Y C - T D S S L S V Q - D Y Q F L . . . . . . 23756 AGGAATGACACCCTTCAGTGTACAATTATATGCTTCAAAAATTTGCAAGGAGTTTGAGAA R N D T L Q C T I I C F K N L Q G V - E G M T P F S V Q L Y A S K I C K E F E K E E - H P S V Y N Y M L Q K F A R S L R . . . . . . 23696 ATTACCAACAGATGCAGGCAATACACCATCCAACGGATTACCTGCTAACGTGAGTGCTCT I T N R C R Q Y T I Q R I T C - R E C S L P T D A G N T P S N G L P A N V S A L N Y Q Q M Q A I H H P T D Y L L T - V L . . . . . . 23636 TAGATTCCTACAGTTTGTCAATGATGCAAGGAAGCTCAATGTAGAATCGCTGACAAAATT - I P T V C Q - C K E A Q C R I A D K I R F L Q F V N D A R K L N V E S L T K L L D S Y S L S M M Q G S S M - N R - Q N . . 23576 ATTCCACAGCAAGT I P Q Q F H S K Y S T A S Maximal non-overlapping open reading frames (>= 64 codons): >C06HBa0054K13.1-16-_PGL-8_AGS-1_PPS_1 (23854 23564) (frame '2'; 291 bp, 97 residues) 1 RIDMPCTVFG ICPVNVLLNR LILVSPVRLP ISRGMTPFSV QLYASKICKE FEKLPTDAGN 61 TPSNGLPANV SALRFLQFVN DARKLNVESL TKLFHSK PGL 9 (+ strand): 25025 25653 AGS-1 (25025 25212,25307 25653) SCR (e 0.872 d 1.000 a 0.953,e 0.813) Exon 1 25025 25212 ( 188 n); score: 0.872 Intron 1 25213 25306 ( 94 n); Pd: 1.000 Pa: 0.953 Exon 2 25307 25653 ( 347 n); score: 0.813 PGS (25025 25212,25307 25582) SGN-E314138+ PGS (25059 25212,25307 25653) SGN-E541708- 3-phase translation of AGS-1 (+strand): . . . . . . 25025 TGCAATGGATTATCTCCACAATGGCTATTCAACGCCTGTGGTGCATTGTGACTTGAAGCC C N G L S P Q W L F N A C G A L - L E A A M D Y L H N G Y S T P V V H C D L K P Q W I I S T M A I Q R L W C I V T - S . . . . . . 25085 AAGTAATGTCTTGTTAGATGAAGAAATGGTTGCTCATGTAAGTGATTTTGGCATTGCAAA K - C L V R - R N G C S C K - F W H C K S N V L L D E E M V A H V S D F G I A K Q V M S C - M K K W L L M - V I L A L Q . . . . . . 25145 AATGTTAGGTGCAGGGGAGGCTTTTGTTCAAACAAGGACAGTTGCAACCATTGGATATAT N V R C R G G F C S N K D S C N H W I Y M L G A G E A F V Q T R T V A T I G Y I K C - V Q G R L L F K Q G Q L Q P L D I . : . . . . . 25205 TGCTCCAG : AGTATGGACAAGATGGCATAGTATCCACGAGTTGTGATGTTTATAGTTTTGG C S R : V W T R W H S I H E L - C L - F W A P : E Y G Q D G I V S T S C D V Y S F G L L Q : S M D K M A - Y P R V V M F I V L . . . . . . 25359 CATCGTGATGATGGAGACGTTCACACGAACAAGACCAAGTGATGAGATATTTACTGGAGA H R D D G D V H T N K T K - - D I Y W R I V M M E T F T R T R P S D E I F T G D A S - - W R R S H E Q D Q V M R Y L L E . . . . . . 25419 CTTGAGCATACAGCGTTGGGTTAATGATTCCTTTCCGGGTGAAATTCACAAGGTGGTGGA L E H T A L G - - F L S G - N S Q G G G L S I Q R W V N D S F P G E I H K V V D T - A Y S V G L M I P F R V K F T R W W . . . . . . 25479 TTCGAATTTGGTACAGCCAGGAGATGAACAAATCGCTGCAAAGATGCAATGTTTGTTATC F E F G T A R R - T N R C K D A M F V I S N L V Q P G D E Q I A A K M Q C L L S I R I W Y S Q E M N K S L Q R C N V C Y . . . . . . 25539 TATCATGGAATTAGCTTTGAAGTGCACTTTAGTGAGACCTGATGAAAGAATTAGCATGAA Y H G I S F E V H F S E T - - K N - H E I M E L A L K C T L V R P D E R I S M N L S W N - L - S A L - - D L M K E L A - . . . . . . 25599 TGATGCTCTTTCAGCACTCAAAAAGATTAGACGACAGCTTGTTAGTAGTCGGCAC - C S F S T Q K D - T T A C - - S A D A L S A L K K I R R Q L V S S R H M M L F Q H S K R L D D S L L V V G Maximal non-overlapping open reading frames (>= 64 codons): >C06HBa0054K13.1-16+_PGL-9_AGS-1_PPS_1 (25026 25212,25307 25653) (frame '2'; 534 bp, 178 residues) 1 AMDYLHNGYS TPVVHCDLKP SNVLLDEEMV AHVSDFGIAK MLGAGEAFVQ TRTVATIGYI 61 APEYGQDGIV STSCDVYSFG IVMMETFTRT RPSDEIFTGD LSIQRWVNDS FPGEIHKVVD 121 SNLVQPGDEQ IAAKMQCLLS IMELALKCTL VRPDERISMN DALSALKKIR RQLVSSRH ... finished at: Mon Aug 28 22:14:42 2006 ________________________________________________________________________________ Sequence 17: C06HBa0054K13.1-17, from 1 to 3517, both strands analyzed. ... started at: Mon Aug 28 22:14:42 2006 EST library file: /tmp/cxgn-bacpublish-resources-LF1h7Z/sgn_ests; matching gDNA +strand ... ... found all matches, elapsed seconds = 4 ... matches indexed, elapsed seconds = 4 HitsTableSize = 0 EST library file: /tmp/cxgn-bacpublish-resources-LF1h7Z/sgn_ests; matching gDNA -strand ... ... found all matches, elapsed seconds = 3 ... matches indexed, elapsed seconds = 4 HitsTableSize = 3 ******************************************************************************** EST sequence 2 +strand 641 n (File: SGN-E301078+) 1 CCTTTTAGGG TGTAGCTTAG CACTATATAT AGACGCTATG GCAAACCCTA TTCTGTAATT 61 CTGTTTTTGC CTCTCCATAA TAAAATTGCT CCCTCTCTTC CCGTGGACGT AGCCAATTTA 121 TTGGTGAACC ACGTAAAACT GGTGTCTTGG TTTTCGCGTT TATATATTTT CTCGTATTAT 181 CTCAAATTTC GCACAACACT CTTAATATTC ATAACTATCA TCTTTTCATA TTCATAACCT 241 CCAAATATTT AAATTAAACT TTAAGATATC TTTTGGTATT CCTTCTATTC TATTTGTATA 301 AATTCAACTT CTTTATCTCA TGAAACCCCT ATCAAGATTA TTATTTTTAT TCTATAGTAA 361 AAATAGATGC TGAAAACTCT TGAATTTTGA TAGGATATGA AAGGAGTCGA TAAAAACTCA 421 GAGAGTTATG TACTAATTTT TACTTATTTT TTCATCTATA TATACATCAA TCTTATAAGA 481 ATAATGTCTA TATTGTATTT TTTTCTTAAA TATTCTGTTT CTTTTAGTCT TTTTTTTCAC 541 TCTGTTAGAC TTCTTAATTT AGTTTTCTAT GAATGATTTA TTGTCGTATG TCTTTGAATT 601 TTGTAATTGT TACATTTTAT TATTCATTAC AATTTACATA T Predicted gene structure (within gDNA segment 2488 to 1): Exon 1 1789 1594 ( 196 n); cDNA 1 198 ( 198 n); score: 0.898 MATCH C06HBa0054K13.1-17- SGN-E301078+ 0.898 196 0.306 C PGS_C06HBa0054K13.1-17-_SGN-E301078+ (1789 1594) Alignment (genomic DNA sequence = upper lines): CCTGTTAGGG CGTAGCTTAG CACTATATAT AGACGCTATG GCAAACCCTA TTCTGTAATT 1730 ||| |||||| ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCTTTTAGGG TGTAGCTTAG CACTATATAT AGACGCTATG GCAAACCCTA TTCTGTAATT 60 CTATTCTTGC CTCTCCATAA TAAAACTGCT CCCCCTCATC CCGTGGACGT AGTCAATTTA 1670 || || |||| |||||||||| ||||| |||| ||| ||| || |||||||||| || ||||||| CTGTTTTTGC CTCTCCATAA TAAAATTGCT CCCTCTCTTC CCGTGGACGT AGCCAATTTA 120 TTGGTAAACC ACGTAAATCT GTTGTCTTGT TTTTCGCGTT TATAT-TTTT -TCGTATTAT 1612 ||||| |||| ||||||| || | ||||||| |||||||||| ||||| |||| ||||||||| TTGGTGAACC ACGTAAAACT GGTGTCTTGG TTTTCGCGTT TATATATTTT CTCGTATTAT 180 ATCAAATTCC GCATAACA 1594 ||||||| | ||| |||| CTCAAATTTC GCACAACA 198 hqPGS_C06HBa0054K13.1-17-_SGN-E301078+ (1789 1594) ******************************************************************************** EST sequence 3 +strand 575 n (File: SGN-E301194+) 1 CCTTTTAGGG CGTAGCTTAG CACTATATAT AGACGCTATG GCAAACCCTA TTCTGTAATT 61 CTGTTTTTGC CTCTCCATAA TAAAATTGCT CCCTCTCTTC CCGTGGACGT AGCCAATTTA 121 TTGGTGAACC ACGTAAATCT GTTGTCTTGT TTTTCGCGTT TATATATTTT CTCGTATTAT 181 CTCAAATTTC GCACAACACT CTTAATATTC ATAACTATCA TCTTTTCATA TTCATAACCT 241 CCAAATATTT AAATTAAACT TTAAGAAATC TTTTGGTATT CCTTCTATTC TATTTGTATA 301 AATTCAACTT CTTTATCTCA TGAAACCCCT ATCAAGATTA TTATTTTTAT TCTATAGTAA 361 AAATAGATGC TGAAAACTCT TGAATTTTGA TAGGATATGA AAGGAGTCGA TAAAAACTCA 421 GAGAGTTATG TACTAATTTT TACTTATTTT TTCATCTATA TATACATCAA TCTTATAAGA 481 ATAATGTCTA TATTGTATTT TTTTCTTAAA TATTCTGTTT CTTTTAGTCT TTTTTTTCAC 541 TCTGTTAGAC TTCTTAATTT AGTTTTCTAT GAATG Predicted gene structure (within gDNA segment 2425 to 1): Exon 1 1789 1594 ( 196 n); cDNA 1 198 ( 198 n); score: 0.918 MATCH C06HBa0054K13.1-17- SGN-E301194+ 0.918 196 0.341 C PGS_C06HBa0054K13.1-17-_SGN-E301194+ (1789 1594) Alignment (genomic DNA sequence = upper lines): CCTGTTAGGG CGTAGCTTAG CACTATATAT AGACGCTATG GCAAACCCTA TTCTGTAATT 1730 ||| |||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCTTTTAGGG CGTAGCTTAG CACTATATAT AGACGCTATG GCAAACCCTA TTCTGTAATT 60 CTATTCTTGC CTCTCCATAA TAAAACTGCT CCCCCTCATC CCGTGGACGT AGTCAATTTA 1670 || || |||| |||||||||| ||||| |||| ||| ||| || |||||||||| || ||||||| CTGTTTTTGC CTCTCCATAA TAAAATTGCT CCCTCTCTTC CCGTGGACGT AGCCAATTTA 120 TTGGTAAACC ACGTAAATCT GTTGTCTTGT TTTTCGCGTT TATAT-TTTT -TCGTATTAT 1612 ||||| |||| |||||||||| |||||||||| |||||||||| ||||| |||| ||||||||| TTGGTGAACC ACGTAAATCT GTTGTCTTGT TTTTCGCGTT TATATATTTT CTCGTATTAT 180 ATCAAATTCC GCATAACA 1594 ||||||| | ||| |||| CTCAAATTTC GCACAACA 198 hqPGS_C06HBa0054K13.1-17-_SGN-E301194+ (1789 1594) ******************************************************************************** EST sequence 1 +strand 617 n (File: SGN-E288383+) 1 TCAACTTGTG GGGGAATAAT TTTGACATCG ATTCAACATT GAGCTTCCTT GAATCATTGA 61 CAAACTGTAG GAATCTAAGA GTACTCACGC TTGGTGGTAA TCCGTTGGAT GGTGTTTTGC 121 CTGCATCTGT TGGGAATTTC TCAAACTGCT TGCAAATATG TGAAGCATCT AAATGTAAAC 181 TGAATGGTGT CATTTCAAAA CAAATTACTA ATCTTACTGG ATTGACAAGG ATGAGTCTGT 241 CGAACAATCA GTTGATAGGC CATATTCCAA CAACAGTGCA AGGAATGCTG AACCTTCAAG 301 AACTTTACCT ATGAAGCAAC AAGTTAGAAG GAGCCATACC AGATGTTATC TGCAGTTGAC 361 AGTATCTTGG TGCATTAGAA TTGTCAGAGA ATCAATTTTC TAGTTTCGTT CCACCATGCT 421 TAGGGAATGT TACTAGTTTG AGGACACTCT ATCTAGATAA CAACAAGCTG GATTCTAGAT 481 TACCTGCAAG ATTGGGGGGA CTTCAAAACA TCATAGAGTT CAATATTTCA TCCAATTATT 541 TGAGTGGAGA AATTCCGCTA GAGAGCGGAA ACTTGAATGG TGCAACACTG ATTGATCTGT 601 CAAATAATTA TTTTTCT Predicted gene structure (within gDNA segment 3517 to 1277): Exon 1 2501 1887 ( 615 n); cDNA 3 617 ( 615 n); score: 0.793 MATCH C06HBa0054K13.1-17- SGN-E288383+ 0.793 615 0.997 C PGS_C06HBa0054K13.1-17-_SGN-E288383+ (2501 1887) Alignment (genomic DNA sequence = upper lines): AACTTGCAGA GTAATAATTT TATCAGCGAT TCATCGTTGA GTTTCCTTAC ATCATTAACA 2442 |||||| | | |||||||| | || |||| ||| | |||| | |||||| |||||| ||| AACTTGTGGG GGAATAATTT TGACATCGAT TCAACATTGA GCTTCCTTGA ATCATTGACA 62 AACTGTAGAA AACTAAGAGT ACTCCTGTTT AGTGAGAATG CATTGGATGG GGCTTTATCA 2382 |||||||| | | |||||||| |||| | || ||| ||| | |||||||| | ||| | AACTGTAGGA ATCTAAGAGT ACTCACGCTT GGTGGTAATC CGTTGGATGG TGTTTTGCCT 122 GTGTCTGTTG GTAATTTCTC AAACTCTCTG CAAAATTTTG AAGGAAATGG TTGTAAGCTA 2322 | ||||||| | |||||||| ||||| || |||| | || ||| | | ||||| || GCATCTGTTG GGAATTTCTC AAACTGCTTG CAAATATGTG AAGCATCTAA ATGTAAACTG 182 AAGGGCATCA TTCCTACAGA AATTGGTAAT CTTACTGGTG TGATATATAT GAGTTTGTAT 2262 || || ||| || | | | | |||| |||| |||||||| ||| | || |||| ||| AATGGTGTCA TTTCAAAACA AATTACTAAT CTTACTGGAT TGACAAGGAT GAGTCTGTCG 242 GACAATAAGT TGACTGGACA TATTCCAAAT ACTGTTCAAG ACATGTTGAA CCTACAAGAA 2202 ||||| ||| ||| || || |||||||| || || |||| ||| |||| ||| |||||| AACAATCAGT TGATAGGCCA TATTCCAACA ACAGTGCAAG GAATGCTGAA CCTTCAAGAA 302 TTTTACCTAA CAAGCAACAA GATAGAAGGA ACCATACCAA ATGCTTTATG CAGTTTAATG 2142 |||||||| ||||||||| | |||||||| |||||||| ||| | | || ||||| | | CTTTACCTAT GAAGCAACAA GTTAGAAGGA GCCATACCAG ATGTTATCTG CAGTTGACAG 362 AATCTTGGCG CATTAGACTT GTCAGGAAAT CATTTTTCTG GTTCAGTGCC CTCATGCTTA 2082 ||||||| | ||||||| || ||||| ||| || |||||| ||| || || |||||||| TATCTTGGTG CATTAGAATT GTCAGAGAAT CAATTTTCTA GTTTCGTTCC ACCATGCTTA 422 GGGAATGTTA CGAGTTTGAG GTATCTTAAT CTAGCTTACA ACAGGCTGAA TTCAAGATTA 2022 |||||||||| | |||||||| | || || |||| | ||| ||| |||| | ||| |||||| GGGAATGTTA CTAGTTTGAG GACACTCTAT CTAGATAACA ACAAGCTGGA TTCTAGATTA 482 CCTGCAAACT TAGGGAGCCT TCAAGATCTC ATAACATTCA ATATTTCATC CAATTTATTG 1962 ||||||| | | ||| | || |||| | || ||| |||| |||||||||| ||||| ||| CCTGCAAGAT TGGGGGGACT TCAAAACATC ATAGAGTTCA ATATTTCATC CAATTATTTG 542 AGTGGGGAAA TTCCGCTAGA GAGCGGAAAC TTGAAGGCTG CAACACTGAT TGATCTGTCA 1902 ||||| |||| |||||||||| |||||||||| ||||| | || |||||||||| |||||||||| AGTGGAGAAA TTCCGCTAGA GAGCGGAAAC TTGAATGGTG CAACACTGAT TGATCTGTCA 602 AATAATTATT TTTCT 1887 |||||||||| ||||| AATAATTATT TTTCT 617 hqPGS_C06HBa0054K13.1-17-_SGN-E288383+ (2501 1887) Total number of EST alignments reported: 3 ________________________________________________________________________________ Predicted gene locations (1) in segment 1 to 3517: PGL 1 (- strand): 2501 1594 AGS-1 (1789 1594) SCR (e 0.918) Exon 1 1789 1594 ( 196 n); score: 0.918 PGS (1789 1594) SGN-E301078+ PGS (1789 1594) SGN-E301194+ 3-phase translation of AGS-1 (-strand): . . . . . . 1789 CCTGTTAGGGCGTAGCTTAGCACTATATATAGACGCTATGGCAAACCCTATTCTGTAATT P V R A - L S T I Y R R Y G K P Y S V I L L G R S L A L Y I D A M A N P I L - F C - G V A - H Y I - T L W Q T L F C N . . . . . . 1729 CTATTCTTGCCTCTCCATAATAAAACTGCTCCCCCTCATCCCGTGGACGTAGTCAATTTA L F L P L H N K T A P P H P V D V V N L Y S C L S I I K L L P L I P W T - S I Y S I L A S P - - N C S P S S R G R S Q F . . . . . . 1669 TTGGTAAACCACGTAAATCTGTTGTCTTGTTTTTCGCGTTTATATTTTTTCGTATTATAT L V N H V N L L S C F S R L Y F F V L Y W - T T - I C C L V F R V Y I F S Y Y I I G K P R K S V V L F F A F I F F R I I . . 1609 CAAATTCCGCATAACA Q I P H N K F R I T S N S A - Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-1 (+strand): . . . . . . 1594 TGTTATGCGGAATTTGATATAATACGAAAAAATATAAACGCGAAAAACAAGACAACAGAT C Y A E F D I I R K N I N A K N K T T D V M R N L I - Y E K I - T R K T R Q Q I L C G I - Y N T K K Y K R E K Q D N R . . . . . . 1654 TTACGTGGTTTACCAATAAATTGACTACGTCCACGGGATGAGGGGGAGCAGTTTTATTAT L R G L P I N - L R P R D E G E Q F Y Y Y V V Y Q - I D Y V H G M R G S S F I M F T W F T N K L T T S T G - G G A V L L . . . . . . 1714 GGAGAGGCAAGAATAGAATTACAGAATAGGGTTTGCCATAGCGTCTATATATAGTGCTAA G E A R I E L Q N R V C H S V Y I - C - E R Q E - N Y R I G F A I A S I Y S A K W R G K N R I T E - G L P - R L Y I V L . . 1774 GCTACGCCCTAACAGG A T P - Q L R P N R S Y A L T Maximal non-overlapping open reading frames (>= 64 codons): none AGS-2 (2501 1887) SCR (e 0.793) Exon 1 2501 1887 ( 615 n); score: 0.793 PGS (2501 1887) SGN-E288383+ 3-phase translation of AGS-2 (-strand): . . . . . . 2501 AACTTGCAGAGTAATAATTTTATCAGCGATTCATCGTTGAGTTTCCTTACATCATTAACA N L Q S N N F I S D S S L S F L T S L T T C R V I I L S A I H R - V S L H H - Q L A E - - F Y Q R F I V E F P Y I I N . . . . . . 2441 AACTGTAGAAAACTAAGAGTACTCCTGTTTAGTGAGAATGCATTGGATGGGGCTTTATCA N C R K L R V L L F S E N A L D G A L S T V E N - E Y S C L V R M H W M G L Y Q K L - K T K S T P V - - E C I G W G F I . . . . . . 2381 GTGTCTGTTGGTAATTTCTCAAACTCTCTGCAAAATTTTGAAGGAAATGGTTGTAAGCTA V S V G N F S N S L Q N F E G N G C K L C L L V I S Q T L C K I L K E M V V S - S V C W - F L K L S A K F - R K W L - A . . . . . . 2321 AAGGGCATCATTCCTACAGAAATTGGTAATCTTACTGGTGTGATATATATGAGTTTGTAT K G I I P T E I G N L T G V I Y M S L Y R A S F L Q K L V I L L V - Y I - V C M K G H H S Y R N W - S Y W C D I Y E F V . . . . . . 2261 GACAATAAGTTGACTGGACATATTCCAAATACTGTTCAAGACATGTTGAACCTACAAGAA D N K L T G H I P N T V Q D M L N L Q E T I S - L D I F Q I L F K T C - T Y K N - Q - V D W T Y S K Y C S R H V E P T R . . . . . . 2201 TTTTACCTAACAAGCAACAAGATAGAAGGAACCATACCAAATGCTTTATGCAGTTTAATG F Y L T S N K I E G T I P N A L C S L M F T - Q A T R - K E P Y Q M L Y A V - - I L P N K Q Q D R R N H T K C F M Q F N . . . . . . 2141 AATCTTGGCGCATTAGACTTGTCAGGAAATCATTTTTCTGGTTCAGTGCCCTCATGCTTA N L G A L D L S G N H F S G S V P S C L I L A H - T C Q E I I F L V Q C P H A - E S W R I R L V R K S F F W F S A L M L . . . . . . 2081 GGGAATGTTACGAGTTTGAGGTATCTTAATCTAGCTTACAACAGGCTGAATTCAAGATTA G N V T S L R Y L N L A Y N R L N S R L G M L R V - G I L I - L T T G - I Q D Y R E C Y E F E V S - S S L Q Q A E F K I . . . . . . 2021 CCTGCAAACTTAGGGAGCCTTCAAGATCTCATAACATTCAATATTTCATCCAATTTATTG P A N L G S L Q D L I T F N I S S N L L L Q T - G A F K I S - H S I F H P I Y - T C K L R E P S R S H N I Q Y F I Q F I . . . . . . 1961 AGTGGGGAAATTCCGCTAGAGAGCGGAAACTTGAAGGCTGCAACACTGATTGATCTGTCA S G E I P L E S G N L K A A T L I D L S V G K F R - R A E T - R L Q H - L I C Q E W G N S A R E R K L E G C N T D - S V . . 1901 AATAATTATTTTTCT N N Y F S I I I F K - L F F Maximal non-overlapping open reading frames (>= 64 codons): >C06HBa0054K13.1-17-_PGL-1_AGS-2_PPS_1 (2501 1887) (frame '1'; 615 bp, 205 residues) 1 NLQSNNFISD SSLSFLTSLT NCRKLRVLLF SENALDGALS VSVGNFSNSL QNFEGNGCKL 61 KGIIPTEIGN LTGVIYMSLY DNKLTGHIPN TVQDMLNLQE FYLTSNKIEG TIPNALCSLM 121 NLGALDLSGN HFSGSVPSCL GNVTSLRYLN LAYNRLNSRL PANLGSLQDL ITFNISSNLL 181 SGEIPLESGN LKAATLIDLS NNYFS 3-phase translation of AGS-2 (+strand): . . . . . . 1887 AGAAAAATAATTATTTGACAGATCAATCAGTGTTGCAGCCTTCAAGTTTCCGCTCTCTAG R K I I I - Q I N Q C C S L Q V S A L - E K - L F D R S I S V A A F K F P L S S K N N Y L T D Q S V L Q P S S F R S L . . . . . . 1947 CGGAATTTCCCCACTCAATAAATTGGATGAAATATTGAATGTTATGAGATCTTGAAGGCT R N F P T Q - I G - N I E C Y E I L K A G I S P L N K L D E I L N V M R S - R L A E F P H S I N W M K Y - M L - D L E G . . . . . . 2007 CCCTAAGTTTGCAGGTAATCTTGAATTCAGCCTGTTGTAAGCTAGATTAAGATACCTCAA P - V C R - S - I Q P V V S - I K I P Q P K F A G N L E F S L L - A R L R Y L K S L S L Q V I L N S A C C K L D - D T S . . . . . . 2067 ACTCGTAACATTCCCTAAGCATGAGGGCACTGAACCAGAAAAATGATTTCCTGACAAGTC T R N I P - A - G H - T R K M I S - Q V L V T F P K H E G T E P E K - F P D K S N S - H S L S M R A L N Q K N D F L T S . . . . . . 2127 TAATGCGCCAAGATTCATTAAACTGCATAAAGCATTTGGTATGGTTCCTTCTATCTTGTT - C A K I H - T A - S I W Y G S F Y L V N A P R F I K L H K A F G M V P S I L L L M R Q D S L N C I K H L V W F L L S C . . . . . . 2187 GCTTGTTAGGTAAAATTCTTGTAGGTTCAACATGTCTTGAACAGTATTTGGAATATGTCC A C - V K F L - V Q H V L N S I W N M S L V R - N S C R F N M S - T V F G I C P C L L G K I L V G S T C L E Q Y L E Y V . . . . . . 2247 AGTCAACTTATTGTCATACAAACTCATATATATCACACCAGTAAGATTACCAATTTCTGT S Q L I V I Q T H I Y H T S K I T N F C V N L L S Y K L I Y I T P V R L P I S V Q S T Y C H T N S Y I S H Q - D Y Q F L . . . . . . 2307 AGGAATGATGCCCTTTAGCTTACAACCATTTCCTTCAAAATTTTGCAGAGAGTTTGAGAA R N D A L - L T T I S F K I L Q R V - E G M M P F S L Q P F P S K F C R E F E K - E - C P L A Y N H F L Q N F A E S L R . . . . . . 2367 ATTACCAACAGACACTGATAAAGCCCCATCCAATGCATTCTCACTAAACAGGAGTACTCT I T N R H - - S P I Q C I L T K Q E Y S L P T D T D K A P S N A F S L N R S T L N Y Q Q T L I K P H P M H S H - T G V L . . . . . . 2427 TAGTTTTCTACAGTTTGTTAATGATGTAAGGAAACTCAACGATGAATCGCTGATAAAATT - F S T V C - - C K E T Q R - I A D K I S F L Q F V N D V R K L N D E S L I K L L V F Y S L L M M - G N S T M N R - - N . . 2487 ATTACTCTGCAAGTT I T L Q V L L C K Y Y S A S Maximal non-overlapping open reading frames (>= 64 codons): >C06HBa0054K13.1-17+_PGL-1_AGS-2_PPS_1 (2227 2499) (frame '2'; 273 bp, 91 residues) 1 TVFGICPVNL LSYKLIYITP VRLPISVGMM PFSLQPFPSK FCREFEKLPT DTDKAPSNAF 61 SLNRSTLSFL QFVNDVRKLN DESLIKLLLC K ... finished at: Mon Aug 28 22:14:51 2006