GeneSeqer. Version of March 12, 2006. Date run: Mon Aug 28 21:48:12 2006 (Bayesian) Splice site model (species): Arabidopsis thaliana Fast search parameters: MinMatchLen 16, MinQualityHSP 30, MinQualityCHAIN 50. Total number of ESTs: 175665 Total sequence length: 93213537 Minimum sequence length: 89 Maximum sequence length: 1082 Length distribution (number of sequences of specified length): < 100: 1 < 200: 2188 < 300: 8544 < 400: 20465 < 500: 39499 < 600: 49432 < 700: 32872 < 800: 19308 < 900: 3155 < 1000: 193 >=1000: 8 Input file : /tmp/bac-submission-temp-pKJ1y/C06HBa0158P14/C06HBa0158P14.seq.screen ________________________________________________________________________________ Sequence 1: C06HBa0158P14.1-1, from 1 to 1524, both strands analyzed. ... started at: Mon Aug 28 22:09:36 2006 EST library file: /tmp/cxgn-bacpublish-resources-E8LUak/sgn_ests; matching gDNA +strand ... ... found all matches, elapsed seconds = 4 ... matches indexed, elapsed seconds = 5 HitsTableSize = 0 EST library file: /tmp/cxgn-bacpublish-resources-E8LUak/sgn_ests; matching gDNA -strand ... ... found all matches, elapsed seconds = 4 ... matches indexed, elapsed seconds = 4 HitsTableSize = 2 ******************************************************************************** EST sequence 1 +strand 539 n (File: SGN-E353578+) 1 TAATGTCATC CGACACTAAT CGAGTTTATG AATATGAAGA CATAGGTTGG GTTGAGAATA 61 GATCAAAAAA ATTATCTGAA TCTCTAGTTA TGACCAATGG TGAGTATCGA GAATGTGTTT 121 TCTTCTTCAA AAGCAATGAT TGGGAAAATC CCTAAAAAAA GGAGTAAAAA GAAAGTATCA 181 TCCCCAATAT CTTGTTCGAA TCTACTCGAG GGATTGTGGA TTGTTTGTAG CGCGTTTCCT 241 AAAATTTTTA GCGATGAAAT TTCAATCCAA TCTGATGCTT TCTGGTCTGA TTATGAGAAG 301 ATATGCAGCT TTGCTAAAAA AAATATGGCA GTCAAAAGGC CGCAGAAGGT ATATTAGTGA 361 TAATGACGAT CCATCAAAGT CTAGGCTTCA TTTCACACCA CCAAATCATG ATGCATTAGT 421 TAATTCGGAA TAGTTACTGT GTATCGATGG ATAGACAGTG CTTTAGTTAA TACTACTTTC 481 AATGTACATT AACTTAAGTG TTGGAGTGTT TCTCTAAAAA CTTATTTTGT TTTGACTTT Predicted gene structure (within gDNA segment 1524 to 1): Exon 1 577 244 ( 334 n); cDNA 211 539 ( 329 n); score: 0.810 MATCH C06HBa0158P14.1-1- SGN-E353578+ 0.810 334 0.620 C PGS_C06HBa0158P14.1-1-_SGN-E353578+ (577 244) Alignment (genomic DNA sequence = upper lines): GGATTGTAGA TTATTTGTGC CCACGTTTTT TGAATTTCTT AGC-AGAAAA ATTCAATCCA 519 ||||||| || || ||||| | ||||| | || || || ||| | ||| ||||||||| GGATTGTGGA TTGTTTGT-A GCGCGTTTCC TAAAATTTTT AGCGATGAAA TTTCAATCCA 269 ATTTTATGCT TTCTTGACTT GATTATCTCT ACTCAAGATA TGAAACTTTG TTATGAAA-A 460 || | ||||| |||| | | | |||||| | |||||| || | ||||| || ||| | ATCTGATGCT TTCTGGTC-T GATTATG--- A--GAAGATA TGCAGCTTTG CTAAAAAAAA 323 TATGGCAGTC AAAAGGCCGC AGAAGGGTAT ATTAGTGAAT ATGACGATCC ATCAAA-CCT 401 |||||||||| |||||||||| |||| ||||| |||||||| |||||||||| |||||| || TATGGCAGTC AAAAGGCCGC AGAA-GGTAT ATTAGTGATA ATGACGATCC ATCAAAGTCT 382 AGGCGTCATT TCACACCACC AAATCATGAT GTGTTAGTTA ATCTAGAATA GTTTACGTGT 341 |||| ||||| |||||||||| |||||||||| | ||||||| || ||||| ||| |||| AGGCTTCATT TCACACCACC AAATCATGAT GCATTAGTTA ATTCGGAATA GTTACTGTGT 442 ATTGATGGAT AGACAGTGTT TTTTAGTTAA GACTA-TTTT AATGTACATT AACTTAAGTG 282 || ||||||| |||||||| ||||||||| |||| ||| |||||||||| |||||||||| ATCGATGGAT AGACAGTG-- CTTTAGTTAA TACTACTTTC AATGTACATT AACTTAAGTG 500 TTGGAGTGTT TCTCTAAAAA CTTATTTTG- TCTGACTTT 244 |||||||||| |||||||||| ||||||||| | ||||||| TTGGAGTGTT TCTCTAAAAA CTTATTTTGT TTTGACTTT 539 hqPGS_C06HBa0158P14.1-1-_SGN-E353578+ (577 244) ******************************************************************************** EST sequence 2 +strand 536 n (File: SGN-E353496+) 1 TAATGTCATC CGACACTAAT CGAGTTTATG AATATGAAGA CATAGGTTGG GTTGAGAATA 61 GATCAAAAAA ATTATCTGAA TCTCTAGTTA TGACCAATGG TGAGTATCGA GAATGTGTTT 121 TCTTCTTCAA AAGCAATGAT TGGGAAAATC CCTAAAAAAA GGAGTAAAAA GAAAGTATCA 181 TCCCCAATAT CTTGTTCGAA TCTACTCGAG GGATTGTGGA TTGTTTGTAG CGCGTTTCCT 241 AAAATTTTTA GCGATGAAAT TTCAATCCAA TCTGATGCTT TCTGGTCTGA TTATGAGAAG 301 ATATGCAGCT TTGCTAAAAA AAATATGGCA GTCAAAAGGC CGCAGAAGGT ATATTAGTGA 361 TAATGACGAT CCATCAAAGT CTAGGCTTCA TTTCACACCA CCAAATCATG ATGCATTAGT 421 TAATTCGGAA TAGTTACTGT GTATCGATGG ATAGACAGTG CTTTAGTTAA TACTACTTTC 481 AATGTACATT AACTTAAGTG TTGGAGTGTT TCTCTAAAAA CCTATTTTTG TTTGAC Predicted gene structure (within gDNA segment 1524 to 1): Exon 1 577 247 ( 331 n); cDNA 211 536 ( 326 n); score: 0.805 MATCH C06HBa0158P14.1-1- SGN-E353496+ 0.805 331 0.618 C PGS_C06HBa0158P14.1-1-_SGN-E353496+ (577 247) Alignment (genomic DNA sequence = upper lines): GGATTGTAGA TTATTTGTGC CCACGTTTTT TGAATTTCTT AGC-AGAAAA ATTCAATCCA 519 ||||||| || || ||||| | ||||| | || || || ||| | ||| ||||||||| GGATTGTGGA TTGTTTGT-A GCGCGTTTCC TAAAATTTTT AGCGATGAAA TTTCAATCCA 269 ATTTTATGCT TTCTTGACTT GATTATCTCT ACTCAAGATA TGAAACTTTG TTATGAAA-A 460 || | ||||| |||| | | | |||||| | |||||| || | ||||| || ||| | ATCTGATGCT TTCTGGTC-T GATTATG--- A--GAAGATA TGCAGCTTTG CTAAAAAAAA 323 TATGGCAGTC AAAAGGCCGC AGAAGGGTAT ATTAGTGAAT ATGACGATCC ATCAAA-CCT 401 |||||||||| |||||||||| |||| ||||| |||||||| |||||||||| |||||| || TATGGCAGTC AAAAGGCCGC AGAA-GGTAT ATTAGTGATA ATGACGATCC ATCAAAGTCT 382 AGGCGTCATT TCACACCACC AAATCATGAT GTGTTAGTTA ATCTAGAATA GTTTACGTGT 341 |||| ||||| |||||||||| |||||||||| | ||||||| || ||||| ||| |||| AGGCTTCATT TCACACCACC AAATCATGAT GCATTAGTTA ATTCGGAATA GTTACTGTGT 442 ATTGATGGAT AGACAGTGTT TTTTAGTTAA GACTA-TTTT AATGTACATT AACTTAAGTG 282 || ||||||| |||||||| ||||||||| |||| ||| |||||||||| |||||||||| ATCGATGGAT AGACAGTG-- CTTTAGTTAA TACTACTTTC AATGTACATT AACTTAAGTG 500 TTGGAGTGTT TCTCTAAAAA CTTA-TTTTG TCTGAC 247 |||||||||| |||||||||| | || ||||| | |||| TTGGAGTGTT TCTCTAAAAA CCTATTTTTG TTTGAC 536 hqPGS_C06HBa0158P14.1-1-_SGN-E353496+ (577 247) Total number of EST alignments reported: 2 ________________________________________________________________________________ Predicted gene locations (1) in segment 1 to 1524: PGL 1 (- strand): 577 244 AGS-1 (577 244) SCR (e 0.810) Exon 1 577 244 ( 334 n); score: 0.810 PGS (577 244) SGN-E353578+ PGS (577 247) SGN-E353496+ 3-phase translation of AGS-1 (-strand): . . . . . . 577 GGATTGTAGATTATTTGTGCCCACGTTTTTTGAATTTCTTAGCAGAAAAATTCAATCCAA G L - I I C A H V F - I S - Q K N S I Q D C R L F V P T F F E F L S R K I Q S N I V D Y L C P R F L N F L A E K F N P . . . . . . 517 TTTTATGCTTTCTTGACTTGATTATCTCTACTCAAGATATGAAACTTTGTTATGAAAATA F Y A F L T - L S L L K I - N F V M K I F M L S - L D Y L Y S R Y E T L L - K Y I L C F L D L I I S T Q D M K L C Y E N . . . . . . 457 TGGCAGTCAAAAGGCCGCAGAAGGGTATATTAGTGAATATGACGATCCATCAAACCTAGG W Q S K G R R R V Y - - I - R S I K P R G S Q K A A E G Y I S E Y D D P S N L G M A V K R P Q K G I L V N M T I H Q T - . . . . . . 397 CGTCATTTCACACCACCAAATCATGATGTGTTAGTTAATCTAGAATAGTTTACGTGTATT R H F T P P N H D V L V N L E - F T C I V I S H H Q I M M C - L I - N S L R V L A S F H T T K S - C V S - S R I V Y V Y . . . . . . 337 GATGGATAGACAGTGTTTTTTAGTTAAGACTATTTTAATGTACATTAACTTAAGTGTTGG D G - T V F F S - D Y F N V H - L K C W M D R Q C F L V K T I L M Y I N L S V G - W I D S V F - L R L F - C T L T - V L . . . . 277 AGTGTTTCTCTAAAAACTTATTTTGTCTGACTTT S V S L K T Y F V - L V F L - K L I L S D F E C F S K N L F C L T Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-1 (+strand): . . . . . . 244 AAAGTCAGACAAAATAAGTTTTTAGAGAAACACTCCAACACTTAAGTTAATGTACATTAA K V R Q N K F L E K H S N T - V N V H - K S D K I S F - R N T P T L K L M Y I K S Q T K - V F R E T L Q H L S - C T L . . . . . . 304 AATAGTCTTAACTAAAAAACACTGTCTATCCATCAATACACGTAAACTATTCTAGATTAA N S L N - K T L S I H Q Y T - T I L D - I V L T K K H C L S I N T R K L F - I N K - S - L K N T V Y P S I H V N Y S R L . . . . . . 364 CTAACACATCATGATTTGGTGGTGTGAAATGACGCCTAGGTTTGATGGATCGTCATATTC L T H H D L V V - N D A - V - W I V I F - H I M I W W C E M T P R F D G S S Y S T N T S - F G G V K - R L G L M D R H I . . . . . . 424 ACTAATATACCCTTCTGCGGCCTTTTGACTGCCATATTTTCATAACAAAGTTTCATATCT T N I P F C G L L T A I F S - Q S F I S L I Y P S A A F - L P Y F H N K V S Y L H - Y T L L R P F D C H I F I T K F H I . . . . . . 484 TGAGTAGAGATAATCAAGTCAAGAAAGCATAAAATTGGATTGAATTTTTCTGCTAAGAAA - V E I I K S R K H K I G L N F S A K K E - R - S S Q E S I K L D - I F L L R N L S R D N Q V K K A - N W I E F F C - E . . . . 544 TTCAAAAAACGTGGGCACAAATAATCTACAATCC F K K R G H K - S T I S K N V G T N N L Q S I Q K T W A Q I I Y N Maximal non-overlapping open reading frames (>= 64 codons): none ... finished at: Mon Aug 28 22:09:47 2006 ________________________________________________________________________________ Sequence 2: C06HBa0158P14.1-2, from 1 to 3151, both strands analyzed. ... started at: Mon Aug 28 22:09:47 2006 EST library file: /tmp/cxgn-bacpublish-resources-E8LUak/sgn_ests; matching gDNA +strand ... ... found all matches, elapsed seconds = 5 ... matches indexed, elapsed seconds = 5 HitsTableSize = 0 EST library file: /tmp/cxgn-bacpublish-resources-E8LUak/sgn_ests; matching gDNA -strand ... ... found all matches, elapsed seconds = 3 ... matches indexed, elapsed seconds = 3 HitsTableSize = 0 No significant EST matches were found. ... finished at: Mon Aug 28 22:09:55 2006 ________________________________________________________________________________ Sequence 3: C06HBa0158P14.1-3, from 1 to 5005, both strands analyzed. ... started at: Mon Aug 28 22:09:55 2006 EST library file: /tmp/cxgn-bacpublish-resources-E8LUak/sgn_ests; matching gDNA +strand ... ... found all matches, elapsed seconds = 4 ... matches indexed, elapsed seconds = 4 HitsTableSize = 0 EST library file: /tmp/cxgn-bacpublish-resources-E8LUak/sgn_ests; matching gDNA -strand ... ... found all matches, elapsed seconds = 4 ... matches indexed, elapsed seconds = 4 HitsTableSize = 0 No significant EST matches were found. ... finished at: Mon Aug 28 22:10:02 2006 ________________________________________________________________________________ Sequence 4: C06HBa0158P14.1-4, from 1 to 1353, both strands analyzed. ... started at: Mon Aug 28 22:10:02 2006 EST library file: /tmp/cxgn-bacpublish-resources-E8LUak/sgn_ests; matching gDNA +strand ... ... found all matches, elapsed seconds = 3 ... matches indexed, elapsed seconds = 3 HitsTableSize = 0 EST library file: /tmp/cxgn-bacpublish-resources-E8LUak/sgn_ests; matching gDNA -strand ... ... found all matches, elapsed seconds = 4 ... matches indexed, elapsed seconds = 4 HitsTableSize = 0 No significant EST matches were found. ... finished at: Mon Aug 28 22:10:10 2006 ________________________________________________________________________________ Sequence 5: C06HBa0158P14.1-5, from 1 to 8949, both strands analyzed. ... started at: Mon Aug 28 22:10:10 2006 EST library file: /tmp/cxgn-bacpublish-resources-E8LUak/sgn_ests; matching gDNA +strand ... ... found all matches, elapsed seconds = 4 ... matches indexed, elapsed seconds = 4 HitsTableSize = 11 EST library file: /tmp/cxgn-bacpublish-resources-E8LUak/sgn_ests; matching gDNA -strand ... ... found all matches, elapsed seconds = 4 ... matches indexed, elapsed seconds = 4 HitsTableSize = 3 ******************************************************************************** EST sequence 5 +strand 634 n (File: SGN-E317086+) 1 TAAGACCAGG TGTTTTGAGC TTTCAGAAAT TGCTGGTCAC GTTGTCGAGT TCAGTGCGGA 61 CCAGTATGGT AGCCGGTTCA TCCAACAAAA ACTGGAAACT GCCACCCCTG AGGAGAAAAA 121 CATGGTTTTT CAGGAAATTA TTCCCCAAGC TCTTACTTTG ATGACTGATG TTTTTGGTAA 181 TTACGTAATC CAGAAGTTTT TTGAACATGG AATGGCATCT CAGAGGAGAG AATTGGCTAG 241 CAAACTCTTT AGCCATGTAT TAACACTGAG CCTTCAGATG TACGGTTGCC GCGTGATTCA 301 GAAGGCTATA GAAGTGGTAG ATGTGGACCA GAAGATTAAA ATGGTTGAGG AGCTTGATGG 361 TCATGTCATG CGCTGTGTAC GAGATCAGAA TGGGAATCAT GTCGTCCAGA AGTGTATTGA 421 ATGTGTACCA GAAAAACACA TTCAATTCAT TGTCTCTACA TTTTTTGGTC AAGTTGTGAA 481 TCTCTCTACC CATCCATATG GCTGTCGTGT AATTCAGAGA GTATTGGAAC ACTGCTGTGA 541 TGCAATTACA CAAAGTAAAG TGATGGAAGA AATTCTGGGA TCTGTTAGCA TGTTGGCACA 601 AGATCAGTAT GGTAATTATG TTATTCAGCA TGTC Predicted gene structure (within gDNA segment 2165 to 6283): Exon 1 4313 4365 ( 53 n); cDNA 2 54 ( 53 n); score: 0.906 Intron 1 4366 4451 ( 86 n); Pd: 1.000 (s: 0.90), Pa: 0.959 (s: 0.88) Exon 2 4452 4593 ( 142 n); cDNA 55 196 ( 142 n); score: 0.901 Intron 2 4594 4706 ( 113 n); Pd: 0.926 (s: 0.94), Pa: 0.991 (s: 0.98) Exon 3 4707 4814 ( 108 n); cDNA 197 304 ( 108 n); score: 0.889 Intron 3 4815 5007 ( 193 n); Pd: 0.789 (s: 0.82), Pa: 0.998 (s: 0.90) Exon 4 5008 5220 ( 213 n); cDNA 305 517 ( 213 n); score: 0.873 Intron 4 5221 5304 ( 84 n); Pd: 0.993 (s: 0.84), Pa: 0.995 (s: 0.80) Exon 5 5305 5415 ( 111 n); cDNA 518 628 ( 111 n); score: 0.856 Intron 5 5416 6241 ( 826 n); Pd: 0.923 (s: 0.92), Pa: 0.961 (s: 0) Exon 6 6242 6246 ( 5 n); cDNA 629 633 ( 5 n); score: 1.000 MATCH C06HBa0158P14.1-5+ SGN-E317086+ 0.882 632 0.997 C PGS_C06HBa0158P14.1-5+_SGN-E317086+ (4313 4365,4452 4593,4707 4814,5008 5220,5305 5415,6242 6246) Alignment (genomic DNA sequence = upper lines): AAGGCCAAGT GTTTTGAACT TTCAGAAATT GCAGGTCACG TTGTTGAGTT CAGGTATGTA 4372 ||| ||| || ||||||| || |||||||||| || ||||||| |||| ||||| ||| AAGACCAGGT GTTTTGAGCT TTCAGAAATT GCTGGTCACG TTGTCGAGTT CAG....... 54 TCATTAATTT TGTTCTACTT GGTCTTTACC TACTTAAACT AGCCTCACTT CTAAAACTAT 4432 .......... .......... .......... .......... .......... .......... 54 AAATATCACC TGTGATCAGT GCTGACCAGT ATGGGAGCCG ATTCATTCAA CAAAAACTCG 4492 | || ||||||| |||| ||||| ||||| ||| |||||||| | .......... .........T GCGGACCAGT ATGGTAGCCG GTTCATCCAA CAAAAACTGG 95 AAACTGCAAC CACTGAGGAA AAAAACATGG TTTTCCAGGA AATTTTCCCC CAAGCTCTTA 4552 ||||||| || | ||||||| |||||||||| |||| ||||| |||| | ||| |||||||||| AAACTGCCAC CCCTGAGGAG AAAAACATGG TTTTTCAGGA AATTATTCCC CAAGCTCTTA 155 CTTTGATGAC TGATGTCTTT GGGAATTATG TAATCCAGAA GGTATCTCTA ACTTTGGTTG 4612 |||||||||| |||||| ||| || ||||| | |||||||||| | CTTTGATGAC TGATGTTTTT GGTAATTACG TAATCCAGAA G......... .......... 196 TTCTATGGAG TATATATTGA TGTTGAGGTG CATGATCTCC AAGTCTGCTT TGTTTCTCTT 4672 .......... .......... .......... .......... .......... .......... 196 TAAATGGGTT ATAATGCATC TATTTCTCGT GCAGTTTTTT GAACATGGAA TGGCATCTCA 4732 |||||| |||||||||| |||||||||| .......... .......... .......... ....TTTTTT GAACATGGAA TGGCATCTCA 222 GAGGAGAGAA TTGGCTAGCA TACTCTTTGG GCATGTTCTA ACGCTGAGCC TTCAAATGTA 4792 |||||||||| |||||||||| ||||||| | ||||| || || ||||||| |||| ||||| GAGGAGAGAA TTGGCTAGCA AACTCTTTAG CCATGTATTA ACACTGAGCC TTCAGATGTA 282 TGGTTGTCGT GTGATACAAA AGGTATGCCA AAGTGAATCT AGGAATGCTC ATACATGCTC 4852 ||||| || ||||| || | || CGGTTGCCGC GTGATTCAGA AG........ .......... .......... .......... 304 AAGTGTTATC TGCTAGATTA ATCTTTTGTT TTGGTTTTTA TTCTGATACA CTAAAAGTTA 4912 .......... .......... .......... .......... .......... .......... 304 GCACCAACCA GTGGGCTCTC TGGGCTGATT ATCAGCTTCT TCTCAATAAC ATGAGTTATA 4972 .......... .......... .......... .......... .......... .......... 304 TTGAGATGAA AATTGTGGTA TGGTTGACTC TGCAGGCAAT AGAAGTAGTT GACGTGGACC 5032 || || |||||| || || ||||||| .......... .......... .......... .....GCTAT AGAAGTGGTA GATGTGGACC 329 AGAAAATTAA AATGGTTGAG GAGCTTGATG GTCATGTTAT GCGCTGTGTA CGAGATCAGA 5092 |||| ||||| |||||||||| |||||||||| ||||||| || |||||||||| |||||||||| AGAAGATTAA AATGGTTGAG GAGCTTGATG GTCATGTCAT GCGCTGTGTA CGAGATCAGA 389 ATGGTAATCA TGTCATTCAG AAATGTATTG AATGCGTACC AGAACTTCAT ATCCAATTTA 5152 |||| ||||| |||| | ||| || ||||||| |||| ||||| |||| || || ||||| | ATGGGAATCA TGTCGTCCAG AAGTGTATTG AATGTGTACC AGAAAAACAC ATTCAATTCA 449 TCGTCTCAAC ATTTTTTGGA CAAGTTATTA CTCTCTCAAC CCATCCATAT GGCTGTCGAG 5212 | ||||| || ||||||||| |||||| | | |||||| || |||||||||| |||||||| | TTGTCTCTAC ATTTTTTGGT CAAGTTGTGA ATCTCTCTAC CCATCCATAT GGCTGTCGTG 509 TTATACAGGT AGATAAGTGA TGTTTCTTAC CCATTTGTCA TTGTAATTTA CTTTGATATA 5272 | || ||| TAATTCAG.. .......... .......... .......... .......... .......... 517 GTACTAATAT TCCTTGATCC TTGATCTTTC AGAGAGTATT GGAACACTGT GACAATCCAG 5332 |||||||| ||||||||| || || .......... .......... .......... ..AGAGTATT GGAACACTGC TGTGATGCAA 545 AAACTCAAAG TAAAGTGATG GAAGAAATCC TTGGATCTGT AAGCATGTTG GCACAAGATC 5392 || ||||| |||||||||| |||||||| | | |||||||| ||||||||| |||||||||| TTACACAAAG TAAAGTGATG GAAGAAATTC TGGGATCTGT TAGCATGTTG GCACAAGATC 605 AATATGGCAA TTATGTTGTT CAGGTATGTA ATATTCACTA CTCAGCAATT TGCTGCAGCT 5452 | ||||| || ||||||| || ||| AGTATGGTAA TTATGTTATT CAG....... .......... .......... .......... 628 GGCGTGTGGA CTATCGTATT TAGAAGTAAC TATTTTTTGG TTCTTTTTCT TGAATTAGTT 5512 .......... .......... .......... .......... .......... .......... 628 GTTTTTTGTA CACACTATCT TCACTTCTTG ACTAGTATGG AGCAATGCAT AAAATGTACC 5572 .......... .......... .......... .......... .......... .......... 628 CGAGTTGGGA ATTCCTGATT TTATTTTGAT AAGGTAAAAG TTGATTACTG TAATGAAGTA 5632 .......... .......... .......... .......... .......... .......... 628 CCAAGATGTA CAAAGACATT ACAGGGAAAT ACAGAACTCC CTGAACATCT AACCCTCCCA 5692 .......... .......... .......... .......... .......... .......... 628 GCAGACACAA GAAGTTCTGT TATGAGCATA TACTTTGCTT ATTTTTAAAT ATGGAATATC 5752 .......... .......... .......... .......... .......... .......... 628 ACACATTTCA TTCCATTGAT TGATGGCTCT GTCAGTTTCG CAACTTTAGT TGTTTGCGAT 5812 .......... .......... .......... .......... .......... .......... 628 GTCGTTAATT TTTTTTTTTA CTTCTTTGAA AACTAGAAGT TAGAAAATTG AAAAACTATT 5872 .......... .......... .......... .......... .......... .......... 628 CACAAAAAAT TTCAACCATA TGCACGCACA TACACATTCA CGTGGTTCTC TAGTGTTACC 5932 .......... .......... .......... .......... .......... .......... 628 AATGTATGCC GTCACCCTTA ACAGGATGCT AAATGGGGAA CCTAGTACCT GTTCTGGCTA 5992 .......... .......... .......... .......... .......... .......... 628 GAAGAAAAAG GTTATTAAGA AATGGTATTC CCCTCTATTA TAAGACAGAA GCCCTTCTTG 6052 .......... .......... .......... .......... .......... .......... 628 AGTTCTTATT TGCTTCCTTT GATTTTGTTT TAATAGAGTA TTAGTGAGTG AAAGCGCTCT 6112 .......... .......... .......... .......... .......... .......... 628 TTTATTCGGT TAAAAGTTTG CTTGTAAAAA TTTAGCAAAG ATGTCTTGCA TCCCTATACT 6172 .......... .......... .......... .......... .......... .......... 628 GAGGTACAAT TCGACCTTTT TTCCTTGTAC TTATTCATCC CTCTGTTGTT TCAAATGCAA 6232 .......... .......... .......... .......... .......... .......... 628 TACTTCCAGC ATGT 6246 | |||| .........C ATGT 633 hqPGS_C06HBa0158P14.1-5+_SGN-E317086+ (4313 4365,4452 4593,4707 4814,5008 5220,5305 5415) ******************************************************************************** EST sequence 2 +strand 374 n (File: SGN-E252587+) 1 GTGCCGCGTG ATTCAGAAAG CTATAGAAGT GGTAGATGTG GACCAGAAGA TTAAAATGGT 61 TGAGGAGCTT GATGGTCATG TCATGCGCTG TGTACGAGAT CAGAATGGGA ATCATGTCGT 121 CCAGAAGTGT ATTGAATGTG TACCAGAAAA ACACATTCAA TTCATTGTCT CTACATTTTT 181 TGGTCAAGTT GTGAATCTCT CTACCCATCC ATATGGCTGT CGTGTAATTC AGAGAGTATT 241 GGAACACTGC TGTGATGCAA TTACACAAAG TAAAGTGATG GAAGAAATTC TGGGATCTGT 301 TAGCATGTTG GCACAAGATC AGTATGGTAA TTATGTTATT CAGCATGTCC TGGAGCATGG 361 GAAGCCACAC GAGC Predicted gene structure (within gDNA segment 3948 to 6533): Exon 1 4797 4814 ( 18 n); cDNA 2 19 ( 18 n); score: 0.722 Intron 1 4815 5007 ( 193 n); Pd: 0.789 (s: 0), Pa: 0.998 (s: 0.90) Exon 2 5008 5220 ( 213 n); cDNA 20 232 ( 213 n); score: 0.873 Intron 2 5221 5304 ( 84 n); Pd: 0.993 (s: 0.84), Pa: 0.995 (s: 0.80) Exon 3 5305 5415 ( 111 n); cDNA 233 343 ( 111 n); score: 0.856 Intron 3 5416 6241 ( 826 n); Pd: 0.923 (s: 0.92), Pa: 0.961 (s: 0) Exon 4 6242 6272 ( 31 n); cDNA 344 374 ( 31 n); score: 0.806 MATCH C06HBa0158P14.1-5+ SGN-E252587+ 0.867 373 0.997 C PGS_C06HBa0158P14.1-5+_SGN-E252587+ (4797 4814,5008 5220,5305 5415,6242 6272) Alignment (genomic DNA sequence = upper lines): TGTCGTGTGA TACAAAAGGT ATGCCAAAGT GAATCTAGGA ATGCTCATAC ATGCTCAAGT 4856 || || |||| | || || TGCCGCGTGA TTCAGAAA.. .......... .......... .......... .......... 19 GTTATCTGCT AGATTAATCT TTTGTTTTGG TTTTTATTCT GATACACTAA AAGTTAGCAC 4916 .......... .......... .......... .......... .......... .......... 19 CAACCAGTGG GCTCTCTGGG CTGATTATCA GCTTCTTCTC AATAACATGA GTTATATTGA 4976 .......... .......... .......... .......... .......... .......... 19 GATGAAAATT GTGGTATGGT TGACTCTGCA GGCAATAGAA GTAGTTGACG TGGACCAGAA 5036 || |||||| || || || | |||||||||| .......... .......... .......... .GCTATAGAA GTGGTAGATG TGGACCAGAA 48 AATTAAAATG GTTGAGGAGC TTGATGGTCA TGTTATGCGC TGTGTACGAG ATCAGAATGG 5096 ||||||||| |||||||||| |||||||||| ||| |||||| |||||||||| |||||||||| GATTAAAATG GTTGAGGAGC TTGATGGTCA TGTCATGCGC TGTGTACGAG ATCAGAATGG 108 TAATCATGTC ATTCAGAAAT GTATTGAATG CGTACCAGAA CTTCATATCC AATTTATCGT 5156 ||||||||| | ||||| | |||||||||| ||||||||| || || | |||| || || GAATCATGTC GTCCAGAAGT GTATTGAATG TGTACCAGAA AAACACATTC AATTCATTGT 168 CTCAACATTT TTTGGACAAG TTATTACTCT CTCAACCCAT CCATATGGCT GTCGAGTTAT 5216 ||| |||||| ||||| |||| || | | ||| ||| |||||| |||||||||| |||| || || CTCTACATTT TTTGGTCAAG TTGTGAATCT CTCTACCCAT CCATATGGCT GTCGTGTAAT 228 ACAGGTAGAT AAGTGATGTT TCTTACCCAT TTGTCATTGT AATTTACTTT GATATAGTAC 5276 ||| TCAG...... .......... .......... .......... .......... .......... 232 TAATATTCCT TGATCCTTGA TCTTTCAGAG AGTATTGGAA CACTGTGACA ATCCAGAAAC 5336 || |||||||||| ||||| || || || .......... .......... ........AG AGTATTGGAA CACTGCTGTG ATGCAATTAC 264 TCAAAGTAAA GTGATGGAAG AAATCCTTGG ATCTGTAAGC ATGTTGGCAC AAGATCAATA 5396 ||||||||| |||||||||| |||| || || |||||| ||| |||||||||| ||||||| || ACAAAGTAAA GTGATGGAAG AAATTCTGGG ATCTGTTAGC ATGTTGGCAC AAGATCAGTA 324 TGGCAATTAT GTTGTTCAGG TATGTAATAT TCACTACTCA GCAATTTGCT GCAGCTGGCG 5456 ||| |||||| ||| ||||| TGGTAATTAT GTTATTCAG. .......... .......... .......... .......... 343 TGTGGACTAT CGTATTTAGA AGTAACTATT TTTTGGTTCT TTTTCTTGAA TTAGTTGTTT 5516 .......... .......... .......... .......... .......... .......... 343 TTTGTACACA CTATCTTCAC TTCTTGACTA GTATGGAGCA ATGCATAAAA TGTACCCGAG 5576 .......... .......... .......... .......... .......... .......... 343 TTGGGAATTC CTGATTTTAT TTTGATAAGG TAAAAGTTGA TTACTGTAAT GAAGTACCAA 5636 .......... .......... .......... .......... .......... .......... 343 GATGTACAAA GACATTACAG GGAAATACAG AACTCCCTGA ACATCTAACC CTCCCAGCAG 5696 .......... .......... .......... .......... .......... .......... 343 ACACAAGAAG TTCTGTTATG AGCATATACT TTGCTTATTT TTAAATATGG AATATCACAC 5756 .......... .......... .......... .......... .......... .......... 343 ATTTCATTCC ATTGATTGAT GGCTCTGTCA GTTTCGCAAC TTTAGTTGTT TGCGATGTCG 5816 .......... .......... .......... .......... .......... .......... 343 TTAATTTTTT TTTTTACTTC TTTGAAAACT AGAAGTTAGA AAATTGAAAA ACTATTCACA 5876 .......... .......... .......... .......... .......... .......... 343 AAAAATTTCA ACCATATGCA CGCACATACA CATTCACGTG GTTCTCTAGT GTTACCAATG 5936 .......... .......... .......... .......... .......... .......... 343 TATGCCGTCA CCCTTAACAG GATGCTAAAT GGGGAACCTA GTACCTGTTC TGGCTAGAAG 5996 .......... .......... .......... .......... .......... .......... 343 AAAAAGGTTA TTAAGAAATG GTATTCCCCT CTATTATAAG ACAGAAGCCC TTCTTGAGTT 6056 .......... .......... .......... .......... .......... .......... 343 CTTATTTGCT TCCTTTGATT TTGTTTTAAT AGAGTATTAG TGAGTGAAAG CGCTCTTTTA 6116 .......... .......... .......... .......... .......... .......... 343 TTCGGTTAAA AGTTTGCTTG TAAAAATTTA GCAAAGATGT CTTGCATCCC TATACTGAGG 6176 .......... .......... .......... .......... .......... .......... 343 TACAATTCGA CCTTTTTTCC TTGTACTTAT TCATCCCTCT GTTGTTTCAA ATGCAATACT 6236 .......... .......... .......... .......... .......... .......... 343 TCCAGCATGT ATTGGAGCAC GGGAAGCCGG ATGAGC 6272 ||||| ||||||| |||||||| | |||| .....CATGT CCTGGAGCAT GGGAAGCCAC ACGAGC 374 hqPGS_C06HBa0158P14.1-5+_SGN-E252587+ (4797 4814,5008 5220,5305 5415,6242 6272) ******************************************************************************** EST sequence 7 +strand 489 n (File: SGN-E204681+) 1 TTACTCTCTC AACCCATCCA TATGGCTGTC GAGTTATACA GAGAGTATTG GAACACTGTG 61 ACAATCCAGA AACTCAAAGT AAAGTGATGG AAGAAATCCT TGGATCTGTA AGCATGTTGG 121 CACAAGATCA ATATGGCAAT TATGTTGTTC AGCATGTATT GGAGCACGGG AAGCCGGATG 181 AGCGCTCTAC TATAATTCAG GAACTAGCTG GGAAGATTGT ACAAATGAGC CAGCAGAAAT 241 TTGCTTCGAA CGTTGTTGAG AAGTGTTTAA CTTTCTGTAA TTCCAGTGAA CGACAGCTAT 301 TGGTGAATGA GATGCTTGGC ACAACTGATG AAAATGAGCC TCTTCAGGCT ATGATGAAAG 361 ATCAGTTTGC AAATTATGTA TTACAGAAGG TTCTGGAAAC TTGTAGTGAT CAGCAACGCG 421 AGCTGATCAT GTCGAGAATT AAAGTTCACT TGAATGCTCT GAAGAAATAT ACTTACGGAA 481 AGCATATTG Predicted gene structure (within gDNA segment 4580 to 8604): Exon 1 5180 5220 ( 41 n); cDNA 1 41 ( 41 n); score: 1.000 Intron 1 5221 5304 ( 84 n); Pd: 0.993 (s: 1.00), Pa: 0.995 (s: 1.00) Exon 2 5305 5415 ( 111 n); cDNA 42 152 ( 111 n); score: 1.000 Intron 2 5416 6241 ( 826 n); Pd: 0.923 (s: 1.00), Pa: 0.961 (s: 1.00) Exon 3 6242 6436 ( 195 n); cDNA 153 347 ( 195 n); score: 1.000 Intron 3 6437 7852 (1416 n); Pd: 1.000 (s: 1.00), Pa: 0.996 (s: 0.98) Exon 4 7853 7994 ( 142 n); cDNA 348 489 ( 142 n); score: 0.993 MATCH C06HBa0158P14.1-5+ SGN-E204681+ 0.998 489 1.000 C PGS_C06HBa0158P14.1-5+_SGN-E204681+ (5180 5220,5305 5415,6242 6436,7853 7994) Alignment (genomic DNA sequence = upper lines): TTACTCTCTC AACCCATCCA TATGGCTGTC GAGTTATACA GGTAGATAAG TGATGTTTCT 5239 |||||||||| |||||||||| |||||||||| |||||||||| | TTACTCTCTC AACCCATCCA TATGGCTGTC GAGTTATACA G......... .......... 41 TACCCATTTG TCATTGTAAT TTACTTTGAT ATAGTACTAA TATTCCTTGA TCCTTGATCT 5299 .......... .......... .......... .......... .......... .......... 41 TTCAGAGAGT ATTGGAACAC TGTGACAATC CAGAAACTCA AAGTAAAGTG ATGGAAGAAA 5359 ||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .....AGAGT ATTGGAACAC TGTGACAATC CAGAAACTCA AAGTAAAGTG ATGGAAGAAA 96 TCCTTGGATC TGTAAGCATG TTGGCACAAG ATCAATATGG CAATTATGTT GTTCAGGTAT 5419 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||| TCCTTGGATC TGTAAGCATG TTGGCACAAG ATCAATATGG CAATTATGTT GTTCAG.... 152 GTAATATTCA CTACTCAGCA ATTTGCTGCA GCTGGCGTGT GGACTATCGT ATTTAGAAGT 5479 .......... .......... .......... .......... .......... .......... 152 AACTATTTTT TGGTTCTTTT TCTTGAATTA GTTGTTTTTT GTACACACTA TCTTCACTTC 5539 .......... .......... .......... .......... .......... .......... 152 TTGACTAGTA TGGAGCAATG CATAAAATGT ACCCGAGTTG GGAATTCCTG ATTTTATTTT 5599 .......... .......... .......... .......... .......... .......... 152 GATAAGGTAA AAGTTGATTA CTGTAATGAA GTACCAAGAT GTACAAAGAC ATTACAGGGA 5659 .......... .......... .......... .......... .......... .......... 152 AATACAGAAC TCCCTGAACA TCTAACCCTC CCAGCAGACA CAAGAAGTTC TGTTATGAGC 5719 .......... .......... .......... .......... .......... .......... 152 ATATACTTTG CTTATTTTTA AATATGGAAT ATCACACATT TCATTCCATT GATTGATGGC 5779 .......... .......... .......... .......... .......... .......... 152 TCTGTCAGTT TCGCAACTTT AGTTGTTTGC GATGTCGTTA ATTTTTTTTT TTACTTCTTT 5839 .......... .......... .......... .......... .......... .......... 152 GAAAACTAGA AGTTAGAAAA TTGAAAAACT ATTCACAAAA AATTTCAACC ATATGCACGC 5899 .......... .......... .......... .......... .......... .......... 152 ACATACACAT TCACGTGGTT CTCTAGTGTT ACCAATGTAT GCCGTCACCC TTAACAGGAT 5959 .......... .......... .......... .......... .......... .......... 152 GCTAAATGGG GAACCTAGTA CCTGTTCTGG CTAGAAGAAA AAGGTTATTA AGAAATGGTA 6019 .......... .......... .......... .......... .......... .......... 152 TTCCCCTCTA TTATAAGACA GAAGCCCTTC TTGAGTTCTT ATTTGCTTCC TTTGATTTTG 6079 .......... .......... .......... .......... .......... .......... 152 TTTTAATAGA GTATTAGTGA GTGAAAGCGC TCTTTTATTC GGTTAAAAGT TTGCTTGTAA 6139 .......... .......... .......... .......... .......... .......... 152 AAATTTAGCA AAGATGTCTT GCATCCCTAT ACTGAGGTAC AATTCGACCT TTTTTCCTTG 6199 .......... .......... .......... .......... .......... .......... 152 TACTTATTCA TCCCTCTGTT GTTTCAAATG CAATACTTCC AGCATGTATT GGAGCACGGG 6259 |||||||| |||||||||| .......... .......... .......... .......... ..CATGTATT GGAGCACGGG 170 AAGCCGGATG AGCGCTCTAC TATAATTCAG GAACTAGCTG GGAAGATTGT ACAAATGAGC 6319 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGCCGGATG AGCGCTCTAC TATAATTCAG GAACTAGCTG GGAAGATTGT ACAAATGAGC 230 CAGCAGAAAT TTGCTTCGAA CGTTGTTGAG AAGTGTTTAA CTTTCTGTAA TTCCAGTGAA 6379 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAGCAGAAAT TTGCTTCGAA CGTTGTTGAG AAGTGTTTAA CTTTCTGTAA TTCCAGTGAA 290 CGACAGCTAT TGGTGAATGA GATGCTTGGC ACAACTGATG AAAATGAGCC TCTTCAGGTT 6439 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||| CGACAGCTAT TGGTGAATGA GATGCTTGGC ACAACTGATG AAAATGAGCC TCTTCAG... 347 TGTCTAAATT TTATTCAACA TTTTACCATT TAAGCAGGAT TTTGATTTGC ATATGGCTAC 6499 .......... .......... .......... .......... .......... .......... 347 TGGGTTCATA ATATTCAGTA CTGCTTCAAG ATAACCTATA TGGGAACTTC AATTTTTTTA 6559 .......... .......... .......... .......... .......... .......... 347 TTATTGTAAG CAACTTCTCT ATCTTCACAA GATGGGGGTA AGATTGCTTA CACATCACCT 6619 .......... .......... .......... .......... .......... .......... 347 TGGGCAGACC CAGACCCAGT TACACTAGGT ATGATGTTGC TGCTGCATCA GGGTGGAGTA 6679 .......... .......... .......... .......... .......... .......... 347 TAATCCACCT ATGTTGAGCA TTTGTTGAAC TTTTAAACTC TTGCATGCAC CTGCCTGAAT 6739 .......... .......... .......... .......... .......... .......... 347 TTCCAAATTC CGGGGTAGCA AGCTTGGTTG AGGATATGTT GGAGCTTCTG GATAGGATGT 6799 .......... .......... .......... .......... .......... .......... 347 TTGAGCCTAG AGATTGCTGA ACTAATGATT GTTGTCTTTT GGTGGGCCTC TATTGAGATA 6859 .......... .......... .......... .......... .......... .......... 347 CAACCCTATC AAGTTCTTTA CCTCTGTTTA TGTTCCTGTT CCTGTTGAGA TGCATGGCAT 6919 .......... .......... .......... .......... .......... .......... 347 TGCAGTCTCA GATTAATCGC TAAGGTTCCC AGCTGTTTTA ATTTTAGGAT GTAGCTTGAA 6979 .......... .......... .......... .......... .......... .......... 347 TGGGACATCA GTCTCTTAAG AAAGGTTGAA CTTGGAAGAA AAAATTGGTA TAACCGATAT 7039 .......... .......... .......... .......... .......... .......... 347 TTTGTGGCAC TTGTTTTTGA AAGGCAAGAA GTGGTTGAAG ATGAAGTTAC CAAACAATCA 7099 .......... .......... .......... .......... .......... .......... 347 TTCATTAATC CCGATTCTTC TATTATTCAG TTTCCTAGCT CCAAAAATTA ACCCAGAAAA 7159 .......... .......... .......... .......... .......... .......... 347 ACCTCAAAAC CAACTGTTGC CGAATTGAAG ATAAGATATT GAACTCTCTT GCTTTATTCA 7219 .......... .......... .......... .......... .......... .......... 347 AACTAAAATC ATGGATTATG TTGAATTCAA AATAAGCACA AAAGTGATAT GTGTTAGCTA 7279 .......... .......... .......... .......... .......... .......... 347 TAATTTCTAA ACTTCTCTTA AAACTAGCTG CACTGTGACC AGCATTGACT TGCCCTTGAC 7339 .......... .......... .......... .......... .......... .......... 347 AGTTGCTAAA AGGCATTTGA AACTGAGGCA AATGGTGATG TTGCATAAGT TTTTGGTTGT 7399 .......... .......... .......... .......... .......... .......... 347 TAATTTATTC ACCGTTCCAA ACATATCATG GTTGGCGGGC AGAGGTAGCT GTCTCTTCTG 7459 .......... .......... .......... .......... .......... .......... 347 ACCTTTGTAT TTTGTTTGTG CTTTTTGACA TCTTGACATG TTTGGTCCCA TTTTAACAAA 7519 .......... .......... .......... .......... .......... .......... 347 ACTACTCGAC TTTGGATGCT TAGACTGATG TGTTGGAACT CTTCTCAAAA AAAGATGGAG 7579 .......... .......... .......... .......... .......... .......... 347 CAAGTGGGGT GGGTGTTCGC CTGGAGTGTT TTCTCTATGT CAAGATACCC CGAGTTTTCT 7639 .......... .......... .......... .......... .......... .......... 347 ATATAATTAT TTTACCTCAA CAATATCATG CTATTACTCT TTGCATCTTT GGGAATAGAG 7699 .......... .......... .......... .......... .......... .......... 347 TTTATCTAAG AAGTACTACC ACATGTACCT ATGGTTTTGA TTTTGGTAGC AGTTGTAACA 7759 .......... .......... .......... .......... .......... .......... 347 TATAAACTTT TAAATAGTCT TGTTTCTCTT CTCTCTTCTC TAATTGAAAT CAGTTGTGCA 7819 .......... .......... .......... .......... .......... .......... 347 TTGTGTTTTC ACATCTTTCT TCTTTTTATC CAGGCTATGA TGAAAGATCA GTTTGCAAAT 7879 ||||||| |||||||||| |||||||||| .......... .......... .......... ...GCTATGA TGAAAGATCA GTTTGCAAAT 374 TATGTAGTAC AGAAGGTTCT GGAAACTTGT AGTGATCAGC AACGCGAGCT GATCATGTCG 7939 |||||| ||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATGTATTAC AGAAGGTTCT GGAAACTTGT AGTGATCAGC AACGCGAGCT GATCATGTCG 434 AGAATTAAAG TTCACTTGAA TGCTCTGAAG AAATATACTT ACGGAAAGCA TATTG 7994 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||| AGAATTAAAG TTCACTTGAA TGCTCTGAAG AAATATACTT ACGGAAAGCA TATTG 489 hqPGS_C06HBa0158P14.1-5+_SGN-E204681+ (5180 5220,5305 5415,6242 6436,7853 7994) ******************************************************************************** EST sequence 6 +strand 686 n (File: SGN-E212554+) 1 GAAATCCTTG GATCTGTAAG CATGTTGGCA CAAGATCAAT ATGGCAATTA TGTTGTTCAG 61 CATGTATTGG AGCACGGGAA GCCGGATGAG CGCTCTACTA TAATTCAGGA ACTAGCTGGG 121 AAGATTGTAC AAATGAGCCA GCAGAAATTT GCTTCGAACG TTGTTGAGAA GTGTTTAACT 181 TTCTGTAATT CCAGTGAACG ACAGCTATTG GTGAATGAGA TGCTTGGCAC AACTGATGAA 241 AATGAGCCTC TTCAGGCTAT GATGAAAGAT CAGTTTGCAA ATTATGTAGT ACAGAAGGTT 301 CTGGAAACTT GTAGTGATCA GCAACGCGAG CTGATCATGT CGAGAATTAA AGTTCACTTG 361 AATGCTCTGA AGAAATATAC TTACGGAAAG CATATTGTCG CCCGTGTTGA AAAGCTAGTT 421 GCTGCTGGGG AAAGGAGGAT TGCTGCGCAG TCCCTAAGTA CTGCTTAGTC ATGTAGGAAA 481 AGAAAGTTGT ACAGCTAACT GAGGCTAGTT TGAGCTACCT ATCTTCCACA TCTGTGTTTT 541 GTTATTTGCA AATAAAAGTT GTTGCATGTA CTAGAGGAGA TGTACATTGT GTAGTTAAAA 601 AAACATAAAT ATCAGGTATG CTGAAGCTCA GATGTCAAAT ATTCGAGATG GCTGTGCAGA 661 TGGAAGTTGA GGTGTAAAAA AAAGGA Predicted gene structure (within gDNA segment 4756 to 8949): Exon 1 5356 5415 ( 60 n); cDNA 1 60 ( 60 n); score: 1.000 Intron 1 5416 6241 ( 826 n); Pd: 0.923 (s: 1.00), Pa: 0.961 (s: 1.00) Exon 2 6242 6436 ( 195 n); cDNA 61 255 ( 195 n); score: 1.000 Intron 2 6437 7852 (1416 n); Pd: 1.000 (s: 1.00), Pa: 0.996 (s: 1.00) Exon 3 7853 8027 ( 175 n); cDNA 256 430 ( 175 n); score: 1.000 Intron 3 8028 8275 ( 248 n); Pd: 0.997 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 4 8276 8532 ( 257 n); cDNA 431 686 ( 256 n); score: 0.996 MATCH C06HBa0158P14.1-5+ SGN-E212554+ 0.999 687 1.001 C PGS_C06HBa0158P14.1-5+_SGN-E212554+ (5356 5415,6242 6436,7853 8027,8276 8532) Alignment (genomic DNA sequence = upper lines): GAAATCCTTG GATCTGTAAG CATGTTGGCA CAAGATCAAT ATGGCAATTA TGTTGTTCAG 5415 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAATCCTTG GATCTGTAAG CATGTTGGCA CAAGATCAAT ATGGCAATTA TGTTGTTCAG 60 GTATGTAATA TTCACTACTC AGCAATTTGC TGCAGCTGGC GTGTGGACTA TCGTATTTAG 5475 .......... .......... .......... .......... .......... .......... 60 AAGTAACTAT TTTTTGGTTC TTTTTCTTGA ATTAGTTGTT TTTTGTACAC ACTATCTTCA 5535 .......... .......... .......... .......... .......... .......... 60 CTTCTTGACT AGTATGGAGC AATGCATAAA ATGTACCCGA GTTGGGAATT CCTGATTTTA 5595 .......... .......... .......... .......... .......... .......... 60 TTTTGATAAG GTAAAAGTTG ATTACTGTAA TGAAGTACCA AGATGTACAA AGACATTACA 5655 .......... .......... .......... .......... .......... .......... 60 GGGAAATACA GAACTCCCTG AACATCTAAC CCTCCCAGCA GACACAAGAA GTTCTGTTAT 5715 .......... .......... .......... .......... .......... .......... 60 GAGCATATAC TTTGCTTATT TTTAAATATG GAATATCACA CATTTCATTC CATTGATTGA 5775 .......... .......... .......... .......... .......... .......... 60 TGGCTCTGTC AGTTTCGCAA CTTTAGTTGT TTGCGATGTC GTTAATTTTT TTTTTTACTT 5835 .......... .......... .......... .......... .......... .......... 60 CTTTGAAAAC TAGAAGTTAG AAAATTGAAA AACTATTCAC AAAAAATTTC AACCATATGC 5895 .......... .......... .......... .......... .......... .......... 60 ACGCACATAC ACATTCACGT GGTTCTCTAG TGTTACCAAT GTATGCCGTC ACCCTTAACA 5955 .......... .......... .......... .......... .......... .......... 60 GGATGCTAAA TGGGGAACCT AGTACCTGTT CTGGCTAGAA GAAAAAGGTT ATTAAGAAAT 6015 .......... .......... .......... .......... .......... .......... 60 GGTATTCCCC TCTATTATAA GACAGAAGCC CTTCTTGAGT TCTTATTTGC TTCCTTTGAT 6075 .......... .......... .......... .......... .......... .......... 60 TTTGTTTTAA TAGAGTATTA GTGAGTGAAA GCGCTCTTTT ATTCGGTTAA AAGTTTGCTT 6135 .......... .......... .......... .......... .......... .......... 60 GTAAAAATTT AGCAAAGATG TCTTGCATCC CTATACTGAG GTACAATTCG ACCTTTTTTC 6195 .......... .......... .......... .......... .......... .......... 60 CTTGTACTTA TTCATCCCTC TGTTGTTTCA AATGCAATAC TTCCAGCATG TATTGGAGCA 6255 |||| |||||||||| .......... .......... .......... .......... ......CATG TATTGGAGCA 74 CGGGAAGCCG GATGAGCGCT CTACTATAAT TCAGGAACTA GCTGGGAAGA TTGTACAAAT 6315 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGGGAAGCCG GATGAGCGCT CTACTATAAT TCAGGAACTA GCTGGGAAGA TTGTACAAAT 134 GAGCCAGCAG AAATTTGCTT CGAACGTTGT TGAGAAGTGT TTAACTTTCT GTAATTCCAG 6375 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGCCAGCAG AAATTTGCTT CGAACGTTGT TGAGAAGTGT TTAACTTTCT GTAATTCCAG 194 TGAACGACAG CTATTGGTGA ATGAGATGCT TGGCACAACT GATGAAAATG AGCCTCTTCA 6435 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAACGACAG CTATTGGTGA ATGAGATGCT TGGCACAACT GATGAAAATG AGCCTCTTCA 254 GGTTTGTCTA AATTTTATTC AACATTTTAC CATTTAAGCA GGATTTTGAT TTGCATATGG 6495 | G......... .......... .......... .......... .......... .......... 255 CTACTGGGTT CATAATATTC AGTACTGCTT CAAGATAACC TATATGGGAA CTTCAATTTT 6555 .......... .......... .......... .......... .......... .......... 255 TTTATTATTG TAAGCAACTT CTCTATCTTC ACAAGATGGG GGTAAGATTG CTTACACATC 6615 .......... .......... .......... .......... .......... .......... 255 ACCTTGGGCA GACCCAGACC CAGTTACACT AGGTATGATG TTGCTGCTGC ATCAGGGTGG 6675 .......... .......... .......... .......... .......... .......... 255 AGTATAATCC ACCTATGTTG AGCATTTGTT GAACTTTTAA ACTCTTGCAT GCACCTGCCT 6735 .......... .......... .......... .......... .......... .......... 255 GAATTTCCAA ATTCCGGGGT AGCAAGCTTG GTTGAGGATA TGTTGGAGCT TCTGGATAGG 6795 .......... .......... .......... .......... .......... .......... 255 ATGTTTGAGC CTAGAGATTG CTGAACTAAT GATTGTTGTC TTTTGGTGGG CCTCTATTGA 6855 .......... .......... .......... .......... .......... .......... 255 GATACAACCC TATCAAGTTC TTTACCTCTG TTTATGTTCC TGTTCCTGTT GAGATGCATG 6915 .......... .......... .......... .......... .......... .......... 255 GCATTGCAGT CTCAGATTAA TCGCTAAGGT TCCCAGCTGT TTTAATTTTA GGATGTAGCT 6975 .......... .......... .......... .......... .......... .......... 255 TGAATGGGAC ATCAGTCTCT TAAGAAAGGT TGAACTTGGA AGAAAAAATT GGTATAACCG 7035 .......... .......... .......... .......... .......... .......... 255 ATATTTTGTG GCACTTGTTT TTGAAAGGCA AGAAGTGGTT GAAGATGAAG TTACCAAACA 7095 .......... .......... .......... .......... .......... .......... 255 ATCATTCATT AATCCCGATT CTTCTATTAT TCAGTTTCCT AGCTCCAAAA ATTAACCCAG 7155 .......... .......... .......... .......... .......... .......... 255 AAAAACCTCA AAACCAACTG TTGCCGAATT GAAGATAAGA TATTGAACTC TCTTGCTTTA 7215 .......... .......... .......... .......... .......... .......... 255 TTCAAACTAA AATCATGGAT TATGTTGAAT TCAAAATAAG CACAAAAGTG ATATGTGTTA 7275 .......... .......... .......... .......... .......... .......... 255 GCTATAATTT CTAAACTTCT CTTAAAACTA GCTGCACTGT GACCAGCATT GACTTGCCCT 7335 .......... .......... .......... .......... .......... .......... 255 TGACAGTTGC TAAAAGGCAT TTGAAACTGA GGCAAATGGT GATGTTGCAT AAGTTTTTGG 7395 .......... .......... .......... .......... .......... .......... 255 TTGTTAATTT ATTCACCGTT CCAAACATAT CATGGTTGGC GGGCAGAGGT AGCTGTCTCT 7455 .......... .......... .......... .......... .......... .......... 255 TCTGACCTTT GTATTTTGTT TGTGCTTTTT GACATCTTGA CATGTTTGGT CCCATTTTAA 7515 .......... .......... .......... .......... .......... .......... 255 CAAAACTACT CGACTTTGGA TGCTTAGACT GATGTGTTGG AACTCTTCTC AAAAAAAGAT 7575 .......... .......... .......... .......... .......... .......... 255 GGAGCAAGTG GGGTGGGTGT TCGCCTGGAG TGTTTTCTCT ATGTCAAGAT ACCCCGAGTT 7635 .......... .......... .......... .......... .......... .......... 255 TTCTATATAA TTATTTTACC TCAACAATAT CATGCTATTA CTCTTTGCAT CTTTGGGAAT 7695 .......... .......... .......... .......... .......... .......... 255 AGAGTTTATC TAAGAAGTAC TACCACATGT ACCTATGGTT TTGATTTTGG TAGCAGTTGT 7755 .......... .......... .......... .......... .......... .......... 255 AACATATAAA CTTTTAAATA GTCTTGTTTC TCTTCTCTCT TCTCTAATTG AAATCAGTTG 7815 .......... .......... .......... .......... .......... .......... 255 TGCATTGTGT TTTCACATCT TTCTTCTTTT TATCCAGGCT ATGATGAAAG ATCAGTTTGC 7875 ||| |||||||||| |||||||||| .......... .......... .......... .......GCT ATGATGAAAG ATCAGTTTGC 278 AAATTATGTA GTACAGAAGG TTCTGGAAAC TTGTAGTGAT CAGCAACGCG AGCTGATCAT 7935 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAATTATGTA GTACAGAAGG TTCTGGAAAC TTGTAGTGAT CAGCAACGCG AGCTGATCAT 338 GTCGAGAATT AAAGTTCACT TGAATGCTCT GAAGAAATAT ACTTACGGAA AGCATATTGT 7995 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTCGAGAATT AAAGTTCACT TGAATGCTCT GAAGAAATAT ACTTACGGAA AGCATATTGT 398 CGCCCGTGTT GAAAAGCTAG TTGCTGCTGG GGGTGAGCTC TTTTTCTGTT TGTACTTGTC 8055 |||||||||| |||||||||| |||||||||| || CGCCCGTGTT GAAAAGCTAG TTGCTGCTGG GG........ .......... .......... 430 TAGATGGTGT TTTTGGCCAT AACTTTACAT GCAAATACAG CACTATTGAA AAAAAAAATT 8115 .......... .......... .......... .......... .......... .......... 430 CACTTATAAA TCTTCCAACC TTTTTTCCAA GTGATACAAT TCCAACTTAC AAAGACTCGT 8175 .......... .......... .......... .......... .......... .......... 430 TCTCCAACTT CCGACTTCAA TAACTTGTTT TGTTTTGAGG TTTCAACTGA ATATTGTCCG 8235 .......... .......... .......... .......... .......... .......... 430 AACGTCTGCT AAATGATTTT TGTATGCTGT TGTTTTGCAG AAAGGAGGAT TGCTGCGCAG 8295 |||||||||| |||||||||| .......... .......... .......... .......... AAAGGAGGAT TGCTGCGCAG 450 TCCCTAAGTA CTGCTTAGTC ATGTAGGAAA AGAAAGTTGT ACAGCTAACT GAGGCTAGTT 8355 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCCCTAAGTA CTGCTTAGTC ATGTAGGAAA AGAAAGTTGT ACAGCTAACT GAGGCTAGTT 510 TGAGCTACCT ATCTTCCACA TCTGTGTTTT GTTATTTGCA AATAAAAGTT GTTGCATGTA 8415 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAGCTACCT ATCTTCCACA TCTGTGTTTT GTTATTTGCA AATAAAAGTT GTTGCATGTA 570 CTAGAGGAGA TGTACATTGT GTAGTTAAAA AAACATAAAT ATCAGGTATG CTGAAGCTCA 8475 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTAGAGGAGA TGTACATTGT GTAGTTAAAA AAACATAAAT ATCAGGTATG CTGAAGCTCA 630 GATGTCAAAT ATTCGAGATG GCTGTGCAGA TGGAAGTTGA GGTGTAAAAA AAAAGGA 8532 |||||||||| |||||||||| |||||||||| |||||||||| ||||| |||| ||||||| GATGTCAAAT ATTCGAGATG GCTGTGCAGA TGGAAGTTGA GGTGT-AAAA AAAAGGA 686 hqPGS_C06HBa0158P14.1-5+_SGN-E212554+ (5356 5415,6242 6436,7853 8027,8276 8532) ******************************************************************************** EST sequence 12 -strand 307 n (File: SGN-E379803-) 1 GGGAAGCCGG ATGAGCGCTC TACTATAATT CAGGAACTAG CTGGGAAGAT TGTACAAATG 61 AGCCAGCAGA AATTTGCTTC GAACGTTGTT GAGAAGTGTT TAACTTTCTG TAATTCCAGT 121 GAACGACAGC TATTGGTGAA TGAGATGCTT GGCACAACTG ATGAAAATGA GCCTCTTCAG 181 GCTATGATGA AAGATCAGTT TGCAAATTAT GTAGTACAGA AGGTTCTGGA AACTTGTAGT 241 GATCAGCAAC GCGAGCTGAT CATGTCGAGA ATTAAAGTTC ACTTGAATGC TCTGAAGAAA 301 TATACTT Predicted gene structure (within gDNA segment 5647 to 8579): Exon 1 6257 6436 ( 180 n); cDNA 1 180 ( 180 n); score: 1.000 Intron 1 6437 7852 (1416 n); Pd: 1.000 (s: 1.00), Pa: 0.996 (s: 1.00) Exon 2 7853 7979 ( 127 n); cDNA 181 307 ( 127 n); score: 1.000 MATCH C06HBa0158P14.1-5+ SGN-E379803- 1.000 307 1.000 C PGS_C06HBa0158P14.1-5+_SGN-E379803- (6257 6436,7853 7979) Alignment (genomic DNA sequence = upper lines): GGGAAGCCGG ATGAGCGCTC TACTATAATT CAGGAACTAG CTGGGAAGAT TGTACAAATG 6316 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGGAAGCCGG ATGAGCGCTC TACTATAATT CAGGAACTAG CTGGGAAGAT TGTACAAATG 60 AGCCAGCAGA AATTTGCTTC GAACGTTGTT GAGAAGTGTT TAACTTTCTG TAATTCCAGT 6376 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCCAGCAGA AATTTGCTTC GAACGTTGTT GAGAAGTGTT TAACTTTCTG TAATTCCAGT 120 GAACGACAGC TATTGGTGAA TGAGATGCTT GGCACAACTG ATGAAAATGA GCCTCTTCAG 6436 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAACGACAGC TATTGGTGAA TGAGATGCTT GGCACAACTG ATGAAAATGA GCCTCTTCAG 180 GTTTGTCTAA ATTTTATTCA ACATTTTACC ATTTAAGCAG GATTTTGATT TGCATATGGC 6496 .......... .......... .......... .......... .......... .......... 180 TACTGGGTTC ATAATATTCA GTACTGCTTC AAGATAACCT ATATGGGAAC TTCAATTTTT 6556 .......... .......... .......... .......... .......... .......... 180 TTATTATTGT AAGCAACTTC TCTATCTTCA CAAGATGGGG GTAAGATTGC TTACACATCA 6616 .......... .......... .......... .......... .......... .......... 180 CCTTGGGCAG ACCCAGACCC AGTTACACTA GGTATGATGT TGCTGCTGCA TCAGGGTGGA 6676 .......... .......... .......... .......... .......... .......... 180 GTATAATCCA CCTATGTTGA GCATTTGTTG AACTTTTAAA CTCTTGCATG CACCTGCCTG 6736 .......... .......... .......... .......... .......... .......... 180 AATTTCCAAA TTCCGGGGTA GCAAGCTTGG TTGAGGATAT GTTGGAGCTT CTGGATAGGA 6796 .......... .......... .......... .......... .......... .......... 180 TGTTTGAGCC TAGAGATTGC TGAACTAATG ATTGTTGTCT TTTGGTGGGC CTCTATTGAG 6856 .......... .......... .......... .......... .......... .......... 180 ATACAACCCT ATCAAGTTCT TTACCTCTGT TTATGTTCCT GTTCCTGTTG AGATGCATGG 6916 .......... .......... .......... .......... .......... .......... 180 CATTGCAGTC TCAGATTAAT CGCTAAGGTT CCCAGCTGTT TTAATTTTAG GATGTAGCTT 6976 .......... .......... .......... .......... .......... .......... 180 GAATGGGACA TCAGTCTCTT AAGAAAGGTT GAACTTGGAA GAAAAAATTG GTATAACCGA 7036 .......... .......... .......... .......... .......... .......... 180 TATTTTGTGG CACTTGTTTT TGAAAGGCAA GAAGTGGTTG AAGATGAAGT TACCAAACAA 7096 .......... .......... .......... .......... .......... .......... 180 TCATTCATTA ATCCCGATTC TTCTATTATT CAGTTTCCTA GCTCCAAAAA TTAACCCAGA 7156 .......... .......... .......... .......... .......... .......... 180 AAAACCTCAA AACCAACTGT TGCCGAATTG AAGATAAGAT ATTGAACTCT CTTGCTTTAT 7216 .......... .......... .......... .......... .......... .......... 180 TCAAACTAAA ATCATGGATT ATGTTGAATT CAAAATAAGC ACAAAAGTGA TATGTGTTAG 7276 .......... .......... .......... .......... .......... .......... 180 CTATAATTTC TAAACTTCTC TTAAAACTAG CTGCACTGTG ACCAGCATTG ACTTGCCCTT 7336 .......... .......... .......... .......... .......... .......... 180 GACAGTTGCT AAAAGGCATT TGAAACTGAG GCAAATGGTG ATGTTGCATA AGTTTTTGGT 7396 .......... .......... .......... .......... .......... .......... 180 TGTTAATTTA TTCACCGTTC CAAACATATC ATGGTTGGCG GGCAGAGGTA GCTGTCTCTT 7456 .......... .......... .......... .......... .......... .......... 180 CTGACCTTTG TATTTTGTTT GTGCTTTTTG ACATCTTGAC ATGTTTGGTC CCATTTTAAC 7516 .......... .......... .......... .......... .......... .......... 180 AAAACTACTC GACTTTGGAT GCTTAGACTG ATGTGTTGGA ACTCTTCTCA AAAAAAGATG 7576 .......... .......... .......... .......... .......... .......... 180 GAGCAAGTGG GGTGGGTGTT CGCCTGGAGT GTTTTCTCTA TGTCAAGATA CCCCGAGTTT 7636 .......... .......... .......... .......... .......... .......... 180 TCTATATAAT TATTTTACCT CAACAATATC ATGCTATTAC TCTTTGCATC TTTGGGAATA 7696 .......... .......... .......... .......... .......... .......... 180 GAGTTTATCT AAGAAGTACT ACCACATGTA CCTATGGTTT TGATTTTGGT AGCAGTTGTA 7756 .......... .......... .......... .......... .......... .......... 180 ACATATAAAC TTTTAAATAG TCTTGTTTCT CTTCTCTCTT CTCTAATTGA AATCAGTTGT 7816 .......... .......... .......... .......... .......... .......... 180 GCATTGTGTT TTCACATCTT TCTTCTTTTT ATCCAGGCTA TGATGAAAGA TCAGTTTGCA 7876 |||| |||||||||| |||||||||| .......... .......... .......... ......GCTA TGATGAAAGA TCAGTTTGCA 204 AATTATGTAG TACAGAAGGT TCTGGAAACT TGTAGTGATC AGCAACGCGA GCTGATCATG 7936 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATTATGTAG TACAGAAGGT TCTGGAAACT TGTAGTGATC AGCAACGCGA GCTGATCATG 264 TCGAGAATTA AAGTTCACTT GAATGCTCTG AAGAAATATA CTT 7979 |||||||||| |||||||||| |||||||||| |||||||||| ||| TCGAGAATTA AAGTTCACTT GAATGCTCTG AAGAAATATA CTT 307 hqPGS_C06HBa0158P14.1-5+_SGN-E379803- (6257 6436,7853 7979) ******************************************************************************** EST sequence 10 +strand 673 n (File: SGN-E349060+) 1 TGTTTAACTT TCTGTAATTC CAGTGAACGA CAGCTATTGG TGAATGAGAT GCTTGGCACA 61 ACTGATGAAA ATGAGCCTCT TCAGGCTATG ATGAAAGATC AGTTTGCAAA TTATGTAGTA 121 CAGAAGGTTC TGGAAACTTG TAGTGATCAG CAACGCGAGC TGATCATGTC GAGAATTAAA 181 GTTCACTTGA ATGCTCTGAA GAAATATACT TACGGAAAGC ATATTGTCGC CCGTGTTGAA 241 AAGCTAGTTG CTGCTGGGGA AAGGAGGATT GCTGCGCAGT CCCTAAGTAC TGCTTAGTCA 301 TGTAGGAAAA GAAAGTTGTA CAGCTAACTG AGGCTAGTTT GAGCTACCTA TCTTCCACAT 361 CTGTGTTTTG TTATTTGCAA ATAAAAGTTG TTGCATGTAC TAGAGGAGAT GTACATTGTG 421 TAGTTAAAAA AACATAAATA TCAGGTATGC TGAAGCTCAG ATGTCAAATA TTCGAGATGG 481 CTGTGCAGAT GGAAGTTGAG GTGTAAAAAA AAAGGAAGAT AAAAAAGGCG AGGTAGTTTT 541 ACATCGACGC GACTGTACAA ATGTTGCCTT TTGTTGGAGA GTTGATGTTT TAGGGGAAGG 601 TCAGAATTTT ATTGTATGGT ATTTCGACAA TTTTATTTCT TTTATGGCCA AGTATATTCT 661 ACTTCAAAAA AAA Predicted gene structure (within gDNA segment 5753 to 8949): Exon 1 6353 6436 ( 84 n); cDNA 1 84 ( 84 n); score: 1.000 Intron 1 6437 7852 (1416 n); Pd: 1.000 (s: 1.00), Pa: 0.996 (s: 1.00) Exon 2 7853 8027 ( 175 n); cDNA 85 259 ( 175 n); score: 1.000 Intron 2 8028 8275 ( 248 n); Pd: 0.997 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 3 8276 8689 ( 414 n); cDNA 260 673 ( 414 n); score: 0.990 MATCH C06HBa0158P14.1-5+ SGN-E349060+ 0.994 673 1.000 C PGS_C06HBa0158P14.1-5+_SGN-E349060+ (6353 6436,7853 8027,8276 8689) Alignment (genomic DNA sequence = upper lines): TGTTTAACTT TCTGTAATTC CAGTGAACGA CAGCTATTGG TGAATGAGAT GCTTGGCACA 6412 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTTTAACTT TCTGTAATTC CAGTGAACGA CAGCTATTGG TGAATGAGAT GCTTGGCACA 60 ACTGATGAAA ATGAGCCTCT TCAGGTTTGT CTAAATTTTA TTCAACATTT TACCATTTAA 6472 |||||||||| |||||||||| |||| ACTGATGAAA ATGAGCCTCT TCAG...... .......... .......... .......... 84 GCAGGATTTT GATTTGCATA TGGCTACTGG GTTCATAATA TTCAGTACTG CTTCAAGATA 6532 .......... .......... .......... .......... .......... .......... 84 ACCTATATGG GAACTTCAAT TTTTTTATTA TTGTAAGCAA CTTCTCTATC TTCACAAGAT 6592 .......... .......... .......... .......... .......... .......... 84 GGGGGTAAGA TTGCTTACAC ATCACCTTGG GCAGACCCAG ACCCAGTTAC ACTAGGTATG 6652 .......... .......... .......... .......... .......... .......... 84 ATGTTGCTGC TGCATCAGGG TGGAGTATAA TCCACCTATG TTGAGCATTT GTTGAACTTT 6712 .......... .......... .......... .......... .......... .......... 84 TAAACTCTTG CATGCACCTG CCTGAATTTC CAAATTCCGG GGTAGCAAGC TTGGTTGAGG 6772 .......... .......... .......... .......... .......... .......... 84 ATATGTTGGA GCTTCTGGAT AGGATGTTTG AGCCTAGAGA TTGCTGAACT AATGATTGTT 6832 .......... .......... .......... .......... .......... .......... 84 GTCTTTTGGT GGGCCTCTAT TGAGATACAA CCCTATCAAG TTCTTTACCT CTGTTTATGT 6892 .......... .......... .......... .......... .......... .......... 84 TCCTGTTCCT GTTGAGATGC ATGGCATTGC AGTCTCAGAT TAATCGCTAA GGTTCCCAGC 6952 .......... .......... .......... .......... .......... .......... 84 TGTTTTAATT TTAGGATGTA GCTTGAATGG GACATCAGTC TCTTAAGAAA GGTTGAACTT 7012 .......... .......... .......... .......... .......... .......... 84 GGAAGAAAAA ATTGGTATAA CCGATATTTT GTGGCACTTG TTTTTGAAAG GCAAGAAGTG 7072 .......... .......... .......... .......... .......... .......... 84 GTTGAAGATG AAGTTACCAA ACAATCATTC ATTAATCCCG ATTCTTCTAT TATTCAGTTT 7132 .......... .......... .......... .......... .......... .......... 84 CCTAGCTCCA AAAATTAACC CAGAAAAACC TCAAAACCAA CTGTTGCCGA ATTGAAGATA 7192 .......... .......... .......... .......... .......... .......... 84 AGATATTGAA CTCTCTTGCT TTATTCAAAC TAAAATCATG GATTATGTTG AATTCAAAAT 7252 .......... .......... .......... .......... .......... .......... 84 AAGCACAAAA GTGATATGTG TTAGCTATAA TTTCTAAACT TCTCTTAAAA CTAGCTGCAC 7312 .......... .......... .......... .......... .......... .......... 84 TGTGACCAGC ATTGACTTGC CCTTGACAGT TGCTAAAAGG CATTTGAAAC TGAGGCAAAT 7372 .......... .......... .......... .......... .......... .......... 84 GGTGATGTTG CATAAGTTTT TGGTTGTTAA TTTATTCACC GTTCCAAACA TATCATGGTT 7432 .......... .......... .......... .......... .......... .......... 84 GGCGGGCAGA GGTAGCTGTC TCTTCTGACC TTTGTATTTT GTTTGTGCTT TTTGACATCT 7492 .......... .......... .......... .......... .......... .......... 84 TGACATGTTT GGTCCCATTT TAACAAAACT ACTCGACTTT GGATGCTTAG ACTGATGTGT 7552 .......... .......... .......... .......... .......... .......... 84 TGGAACTCTT CTCAAAAAAA GATGGAGCAA GTGGGGTGGG TGTTCGCCTG GAGTGTTTTC 7612 .......... .......... .......... .......... .......... .......... 84 TCTATGTCAA GATACCCCGA GTTTTCTATA TAATTATTTT ACCTCAACAA TATCATGCTA 7672 .......... .......... .......... .......... .......... .......... 84 TTACTCTTTG CATCTTTGGG AATAGAGTTT ATCTAAGAAG TACTACCACA TGTACCTATG 7732 .......... .......... .......... .......... .......... .......... 84 GTTTTGATTT TGGTAGCAGT TGTAACATAT AAACTTTTAA ATAGTCTTGT TTCTCTTCTC 7792 .......... .......... .......... .......... .......... .......... 84 TCTTCTCTAA TTGAAATCAG TTGTGCATTG TGTTTTCACA TCTTTCTTCT TTTTATCCAG 7852 .......... .......... .......... .......... .......... .......... 84 GCTATGATGA AAGATCAGTT TGCAAATTAT GTAGTACAGA AGGTTCTGGA AACTTGTAGT 7912 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTATGATGA AAGATCAGTT TGCAAATTAT GTAGTACAGA AGGTTCTGGA AACTTGTAGT 144 GATCAGCAAC GCGAGCTGAT CATGTCGAGA ATTAAAGTTC ACTTGAATGC TCTGAAGAAA 7972 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATCAGCAAC GCGAGCTGAT CATGTCGAGA ATTAAAGTTC ACTTGAATGC TCTGAAGAAA 204 TATACTTACG GAAAGCATAT TGTCGCCCGT GTTGAAAAGC TAGTTGCTGC TGGGGGTGAG 8032 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||| TATACTTACG GAAAGCATAT TGTCGCCCGT GTTGAAAAGC TAGTTGCTGC TGGGG..... 259 CTCTTTTTCT GTTTGTACTT GTCTAGATGG TGTTTTTGGC CATAACTTTA CATGCAAATA 8092 .......... .......... .......... .......... .......... .......... 259 CAGCACTATT GAAAAAAAAA ATTCACTTAT AAATCTTCCA ACCTTTTTTC CAAGTGATAC 8152 .......... .......... .......... .......... .......... .......... 259 AATTCCAACT TACAAAGACT CGTTCTCCAA CTTCCGACTT CAATAACTTG TTTTGTTTTG 8212 .......... .......... .......... .......... .......... .......... 259 AGGTTTCAAC TGAATATTGT CCGAACGTCT GCTAAATGAT TTTTGTATGC TGTTGTTTTG 8272 .......... .......... .......... .......... .......... .......... 259 CAGAAAGGAG GATTGCTGCG CAGTCCCTAA GTACTGCTTA GTCATGTAGG AAAAGAAAGT 8332 ||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ...AAAGGAG GATTGCTGCG CAGTCCCTAA GTACTGCTTA GTCATGTAGG AAAAGAAAGT 316 TGTACAGCTA ACTGAGGCTA GTTTGAGCTA CCTATCTTCC ACATCTGTGT TTTGTTATTT 8392 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTACAGCTA ACTGAGGCTA GTTTGAGCTA CCTATCTTCC ACATCTGTGT TTTGTTATTT 376 GCAAATAAAA GTTGTTGCAT GTACTAGAGG AGATGTACAT TGTGTAGTTA AAAAAACATA 8452 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCAAATAAAA GTTGTTGCAT GTACTAGAGG AGATGTACAT TGTGTAGTTA AAAAAACATA 436 AATATCAGGT ATGCTGAAGC TCAGATGTCA AATATTCGAG ATGGCTGTGC AGATGGAAGT 8512 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATATCAGGT ATGCTGAAGC TCAGATGTCA AATATTCGAG ATGGCTGTGC AGATGGAAGT 496 TGAGGTGTAA AAAAAAAGGA AGATAAAAAA GGCGAGGTAG TTTTACATCG ACGCGACTGT 8572 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAGGTGTAA AAAAAAAGGA AGATAAAAAA GGCGAGGTAG TTTTACATCG ACGCGACTGT 556 ACAAATGTTG CCTTTTGTTG GAGAGTTGAT GTTTTAGGGG AAGGTCAGAA TTTTATTGTA 8632 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACAAATGTTG CCTTTTGTTG GAGAGTTGAT GTTTTAGGGG AAGGTCAGAA TTTTATTGTA 616 TGGTATTTCG ACAATTTTAT TTCTTTTATG GCCAAGTATA TTCTACTTCA TCTCAAA 8689 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||| TGGTATTTCG ACAATTTTAT TTCTTTTATG GCCAAGTATA TTCTACTTCA AAAAAAA 673 hqPGS_C06HBa0158P14.1-5+_SGN-E349060+ (6353 6436,7853 8027,8276 8689) ******************************************************************************** EST sequence 11 +strand 571 n (File: SGN-E349096+) 1 TGTTTAACTT TCTGTAATTC CAGTGAACGA CAGCTATTGG TGAATGAGAT GCTTGGCACA 61 ACTGATGAAA ATGAGCCTCT TCAAGCTATG ATGAAAGATC AGTTTGCAAA TTATGTAGTA 121 CAGAAGGTTC TGGAAACTTG TAGTGATCAA CAACGCAAGC TGATCATGTC GAGAATTAAA 181 GTTCACTTGA ATGCTCTGAA TAAATATACT TACGGAAAGC ATATTGTCTC CCGTGTTGAA 241 AAGCTAGATG CTGCTGGGGA AAGGAGGATT GCTGCGCAAT CCCTAAGTAC TGCTTACTCA 301 TGTAGGAAAA GAAAGTTGTG CAGCTAACTG ATGCTAGTTT GAGCTACCTA TCTTCCACAT 361 CTGCGTTGTG TTATTTGCAA ATAAAAGTTG TCGCATGTAC TATAGGAGAT GTACATTGTG 421 TATCTAAAAA AACATAAATA TCAGCGTGTG CTGAAGCTCA GATGTCAAAT ATTCGAGATG 481 GCTGAGCATA TGGAATTTGA TGTGTAAAAA ATAAGGAAGA TTAAAAAGGC GAGGTAGTTT 541 TACATCGACG CGACTGTACA AATGTTGCCT T Predicted gene structure (within gDNA segment 5753 to 8949): Exon 1 6353 6436 ( 84 n); cDNA 1 84 ( 84 n); score: 0.988 Intron 1 6437 7852 (1416 n); Pd: 1.000 (s: 0.98), Pa: 0.996 (s: 1.00) Exon 2 7853 8027 ( 175 n); cDNA 85 259 ( 175 n); score: 0.971 Intron 2 8028 8275 ( 248 n); Pd: 0.997 (s: 0.96), Pa: 0.999 (s: 0.96) Exon 3 8276 8586 ( 311 n); cDNA 260 571 ( 312 n); score: 0.937 MATCH C06HBa0158P14.1-5+ SGN-E349096+ 0.955 570 0.998 C PGS_C06HBa0158P14.1-5+_SGN-E349096+ (6353 6436,7853 8027,8276 8586) Alignment (genomic DNA sequence = upper lines): TGTTTAACTT TCTGTAATTC CAGTGAACGA CAGCTATTGG TGAATGAGAT GCTTGGCACA 6412 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTTTAACTT TCTGTAATTC CAGTGAACGA CAGCTATTGG TGAATGAGAT GCTTGGCACA 60 ACTGATGAAA ATGAGCCTCT TCAGGTTTGT CTAAATTTTA TTCAACATTT TACCATTTAA 6472 |||||||||| |||||||||| ||| ACTGATGAAA ATGAGCCTCT TCAA...... .......... .......... .......... 84 GCAGGATTTT GATTTGCATA TGGCTACTGG GTTCATAATA TTCAGTACTG CTTCAAGATA 6532 .......... .......... .......... .......... .......... .......... 84 ACCTATATGG GAACTTCAAT TTTTTTATTA TTGTAAGCAA CTTCTCTATC TTCACAAGAT 6592 .......... .......... .......... .......... .......... .......... 84 GGGGGTAAGA TTGCTTACAC ATCACCTTGG GCAGACCCAG ACCCAGTTAC ACTAGGTATG 6652 .......... .......... .......... .......... .......... .......... 84 ATGTTGCTGC TGCATCAGGG TGGAGTATAA TCCACCTATG TTGAGCATTT GTTGAACTTT 6712 .......... .......... .......... .......... .......... .......... 84 TAAACTCTTG CATGCACCTG CCTGAATTTC CAAATTCCGG GGTAGCAAGC TTGGTTGAGG 6772 .......... .......... .......... .......... .......... .......... 84 ATATGTTGGA GCTTCTGGAT AGGATGTTTG AGCCTAGAGA TTGCTGAACT AATGATTGTT 6832 .......... .......... .......... .......... .......... .......... 84 GTCTTTTGGT GGGCCTCTAT TGAGATACAA CCCTATCAAG TTCTTTACCT CTGTTTATGT 6892 .......... .......... .......... .......... .......... .......... 84 TCCTGTTCCT GTTGAGATGC ATGGCATTGC AGTCTCAGAT TAATCGCTAA GGTTCCCAGC 6952 .......... .......... .......... .......... .......... .......... 84 TGTTTTAATT TTAGGATGTA GCTTGAATGG GACATCAGTC TCTTAAGAAA GGTTGAACTT 7012 .......... .......... .......... .......... .......... .......... 84 GGAAGAAAAA ATTGGTATAA CCGATATTTT GTGGCACTTG TTTTTGAAAG GCAAGAAGTG 7072 .......... .......... .......... .......... .......... .......... 84 GTTGAAGATG AAGTTACCAA ACAATCATTC ATTAATCCCG ATTCTTCTAT TATTCAGTTT 7132 .......... .......... .......... .......... .......... .......... 84 CCTAGCTCCA AAAATTAACC CAGAAAAACC TCAAAACCAA CTGTTGCCGA ATTGAAGATA 7192 .......... .......... .......... .......... .......... .......... 84 AGATATTGAA CTCTCTTGCT TTATTCAAAC TAAAATCATG GATTATGTTG AATTCAAAAT 7252 .......... .......... .......... .......... .......... .......... 84 AAGCACAAAA GTGATATGTG TTAGCTATAA TTTCTAAACT TCTCTTAAAA CTAGCTGCAC 7312 .......... .......... .......... .......... .......... .......... 84 TGTGACCAGC ATTGACTTGC CCTTGACAGT TGCTAAAAGG CATTTGAAAC TGAGGCAAAT 7372 .......... .......... .......... .......... .......... .......... 84 GGTGATGTTG CATAAGTTTT TGGTTGTTAA TTTATTCACC GTTCCAAACA TATCATGGTT 7432 .......... .......... .......... .......... .......... .......... 84 GGCGGGCAGA GGTAGCTGTC TCTTCTGACC TTTGTATTTT GTTTGTGCTT TTTGACATCT 7492 .......... .......... .......... .......... .......... .......... 84 TGACATGTTT GGTCCCATTT TAACAAAACT ACTCGACTTT GGATGCTTAG ACTGATGTGT 7552 .......... .......... .......... .......... .......... .......... 84 TGGAACTCTT CTCAAAAAAA GATGGAGCAA GTGGGGTGGG TGTTCGCCTG GAGTGTTTTC 7612 .......... .......... .......... .......... .......... .......... 84 TCTATGTCAA GATACCCCGA GTTTTCTATA TAATTATTTT ACCTCAACAA TATCATGCTA 7672 .......... .......... .......... .......... .......... .......... 84 TTACTCTTTG CATCTTTGGG AATAGAGTTT ATCTAAGAAG TACTACCACA TGTACCTATG 7732 .......... .......... .......... .......... .......... .......... 84 GTTTTGATTT TGGTAGCAGT TGTAACATAT AAACTTTTAA ATAGTCTTGT TTCTCTTCTC 7792 .......... .......... .......... .......... .......... .......... 84 TCTTCTCTAA TTGAAATCAG TTGTGCATTG TGTTTTCACA TCTTTCTTCT TTTTATCCAG 7852 .......... .......... .......... .......... .......... .......... 84 GCTATGATGA AAGATCAGTT TGCAAATTAT GTAGTACAGA AGGTTCTGGA AACTTGTAGT 7912 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTATGATGA AAGATCAGTT TGCAAATTAT GTAGTACAGA AGGTTCTGGA AACTTGTAGT 144 GATCAGCAAC GCGAGCTGAT CATGTCGAGA ATTAAAGTTC ACTTGAATGC TCTGAAGAAA 7972 ||||| |||| || ||||||| |||||||||| |||||||||| |||||||||| |||||| ||| GATCAACAAC GCAAGCTGAT CATGTCGAGA ATTAAAGTTC ACTTGAATGC TCTGAATAAA 204 TATACTTACG GAAAGCATAT TGTCGCCCGT GTTGAAAAGC TAGTTGCTGC TGGGGGTGAG 8032 |||||||||| |||||||||| |||| ||||| |||||||||| ||| |||||| ||||| TATACTTACG GAAAGCATAT TGTCTCCCGT GTTGAAAAGC TAGATGCTGC TGGGG..... 259 CTCTTTTTCT GTTTGTACTT GTCTAGATGG TGTTTTTGGC CATAACTTTA CATGCAAATA 8092 .......... .......... .......... .......... .......... .......... 259 CAGCACTATT GAAAAAAAAA ATTCACTTAT AAATCTTCCA ACCTTTTTTC CAAGTGATAC 8152 .......... .......... .......... .......... .......... .......... 259 AATTCCAACT TACAAAGACT CGTTCTCCAA CTTCCGACTT CAATAACTTG TTTTGTTTTG 8212 .......... .......... .......... .......... .......... .......... 259 AGGTTTCAAC TGAATATTGT CCGAACGTCT GCTAAATGAT TTTTGTATGC TGTTGTTTTG 8272 .......... .......... .......... .......... .......... .......... 259 CAGAAAGGAG GATTGCTGCG CAGTCCCTAA GTACTGCTTA GTCATGTAGG AAAAGAAAGT 8332 ||||||| |||||||||| || ||||||| |||||||||| ||||||||| |||||||||| ...AAAGGAG GATTGCTGCG CAATCCCTAA GTACTGCTTA CTCATGTAGG AAAAGAAAGT 316 TGTACAGCTA ACTGAGGCTA GTTTGAGCTA CCTATCTTCC ACATCTGTGT TTTGTTATTT 8392 ||| |||||| ||||| |||| |||||||||| |||||||||| ||||||| || | |||||||| TGTGCAGCTA ACTGATGCTA GTTTGAGCTA CCTATCTTCC ACATCTGCGT TGTGTTATTT 376 GCAAATAAAA GTTGTTGCAT GTACTAGAGG AGATGTACAT TGTGTAGTTA AAAAAACATA 8452 |||||||||| ||||| |||| |||||| ||| |||||||||| |||||| || |||||||||| GCAAATAAAA GTTGTCGCAT GTACTATAGG AGATGTACAT TGTGTATCTA AAAAAACATA 436 AATATCAG-G TATGCTGAAG CTCAGATGTC AAATATTCGA GATGGCTGTG CAGATGGAAG 8511 |||||||| | | |||||||| |||||||||| |||||||||| |||||||| | || |||||| AATATCAGCG TGTGCTGAAG CTCAGATGTC AAATATTCGA GATGGCTGAG CATATGGAAT 496 TTGAGGTGTA AAAAAAAAGG AAGATAAAAA AGGCGAGGTA GTTTTACATC GACGCGACTG 8571 |||| ||||| ||||| |||| ||||| |||| |||||||||| |||||||||| |||||||||| TTGATGTGTA AAAAATAAGG AAGATTAAAA AGGCGAGGTA GTTTTACATC GACGCGACTG 556 TACAAATGTT GCCTT 8586 |||||||||| ||||| TACAAATGTT GCCTT 571 hqPGS_C06HBa0158P14.1-5+_SGN-E349096+ (6353 6436,7853 8027,8276 8586) ******************************************************************************** EST sequence 14 -strand 587 n (File: SGN-E550415-) 1 CAGTTGTGCA TTGTGTTTTC ACATCTTTCT TCTTTTTATC CAGGCTATGA TGAAAGATCA 61 GTTTGCAAAT TATGTAGTAC AGAAGGTTCT GGAAACTTGT AGTGATCAGC AACGCGAGCT 121 GATCATGTCG AGAATTAAAG TTCACTTGAA TGCTCTGAAG AAATATACTT ACGGAAAGCA 181 TATTGTCGCC CGTGTTGAAA AGCTAGTTGC TGCTGGGGAA AGGAGGATTG CTGCGCAGTC 241 CCTAAGTACT GCTTAGTCAT GTAGGAAAAG AAAGTTGTAC AGCTAACTGA GGCTAGTTTG 301 AGCTACCTAT CTTCCACATC TGTGTTTTGT TATTTGCAAA TAAAAGTTGT TGCATGTACT 361 AGAGGAGATG TACATTGTGT AGTTAAAAAA ACATAAATAT CAGGTATGCT GAAGCTCAGA 421 TGTCAAATAT TCGAGATGGC TGTGCAGATG GAAGTTGAGG TGTAAAAAAA AAGGAAGATA 481 AAAAAGGCGA GGTAGTTTTA CATCGACGCG ACTGTACAAA TGTTGCCTTT TGTTGGAGAG 541 TTGATGTTTT AGGGGAAGGT CAGAATTTTA TTGTATGGTA TTTCGAC Predicted gene structure (within gDNA segment 7200 to 8949): Exon 1 7810 8027 ( 218 n); cDNA 1 218 ( 218 n); score: 1.000 Intron 1 8028 8275 ( 248 n); Pd: 0.997 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 2 8276 8644 ( 369 n); cDNA 219 587 ( 369 n); score: 1.000 MATCH C06HBa0158P14.1-5+ SGN-E550415- 1.000 587 1.000 C PGS_C06HBa0158P14.1-5+_SGN-E550415- (7810 8027,8276 8644) Alignment (genomic DNA sequence = upper lines): CAGTTGTGCA TTGTGTTTTC ACATCTTTCT TCTTTTTATC CAGGCTATGA TGAAAGATCA 7869 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAGTTGTGCA TTGTGTTTTC ACATCTTTCT TCTTTTTATC CAGGCTATGA TGAAAGATCA 60 GTTTGCAAAT TATGTAGTAC AGAAGGTTCT GGAAACTTGT AGTGATCAGC AACGCGAGCT 7929 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTTGCAAAT TATGTAGTAC AGAAGGTTCT GGAAACTTGT AGTGATCAGC AACGCGAGCT 120 GATCATGTCG AGAATTAAAG TTCACTTGAA TGCTCTGAAG AAATATACTT ACGGAAAGCA 7989 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATCATGTCG AGAATTAAAG TTCACTTGAA TGCTCTGAAG AAATATACTT ACGGAAAGCA 180 TATTGTCGCC CGTGTTGAAA AGCTAGTTGC TGCTGGGGGT GAGCTCTTTT TCTGTTTGTA 8049 |||||||||| |||||||||| |||||||||| |||||||| TATTGTCGCC CGTGTTGAAA AGCTAGTTGC TGCTGGGG.. .......... .......... 218 CTTGTCTAGA TGGTGTTTTT GGCCATAACT TTACATGCAA ATACAGCACT ATTGAAAAAA 8109 .......... .......... .......... .......... .......... .......... 218 AAAATTCACT TATAAATCTT CCAACCTTTT TTCCAAGTGA TACAATTCCA ACTTACAAAG 8169 .......... .......... .......... .......... .......... .......... 218 ACTCGTTCTC CAACTTCCGA CTTCAATAAC TTGTTTTGTT TTGAGGTTTC AACTGAATAT 8229 .......... .......... .......... .......... .......... .......... 218 TGTCCGAACG TCTGCTAAAT GATTTTTGTA TGCTGTTGTT TTGCAGAAAG GAGGATTGCT 8289 |||| |||||||||| .......... .......... .......... .......... ......AAAG GAGGATTGCT 232 GCGCAGTCCC TAAGTACTGC TTAGTCATGT AGGAAAAGAA AGTTGTACAG CTAACTGAGG 8349 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCGCAGTCCC TAAGTACTGC TTAGTCATGT AGGAAAAGAA AGTTGTACAG CTAACTGAGG 292 CTAGTTTGAG CTACCTATCT TCCACATCTG TGTTTTGTTA TTTGCAAATA AAAGTTGTTG 8409 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTAGTTTGAG CTACCTATCT TCCACATCTG TGTTTTGTTA TTTGCAAATA AAAGTTGTTG 352 CATGTACTAG AGGAGATGTA CATTGTGTAG TTAAAAAAAC ATAAATATCA GGTATGCTGA 8469 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATGTACTAG AGGAGATGTA CATTGTGTAG TTAAAAAAAC ATAAATATCA GGTATGCTGA 412 AGCTCAGATG TCAAATATTC GAGATGGCTG TGCAGATGGA AGTTGAGGTG TAAAAAAAAA 8529 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCTCAGATG TCAAATATTC GAGATGGCTG TGCAGATGGA AGTTGAGGTG TAAAAAAAAA 472 GGAAGATAAA AAAGGCGAGG TAGTTTTACA TCGACGCGAC TGTACAAATG TTGCCTTTTG 8589 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGAAGATAAA AAAGGCGAGG TAGTTTTACA TCGACGCGAC TGTACAAATG TTGCCTTTTG 532 TTGGAGAGTT GATGTTTTAG GGGAAGGTCA GAATTTTATT GTATGGTATT TCGAC 8644 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||| TTGGAGAGTT GATGTTTTAG GGGAAGGTCA GAATTTTATT GTATGGTATT TCGAC 587 hqPGS_C06HBa0158P14.1-5+_SGN-E550415- (7810 8027,8276 8644) ******************************************************************************** EST sequence 1 +strand 292 n (File: SGN-E378828+) 1 ATGAAAATGA GCCTCTTCAG GCTATGATGA AAGATCAGTT TGCAAATTAT GTGGTACGGA 61 GGTTCTGGAA ACTTGTAGTG ACAGCNNACG CGCAGACTGA TCATGTCGAG AATTAAAGTT 121 CACTTGAATG CTCTGAAGAA ATATACTTAC GGAAAGCATA TTGTCGCCCG TGTTGAAAAG 181 CTAGTTGCTG CTGGGGAAAG GAGGATTGCT GCGCAGTCCC TAAGTACTGC TTAGTCATGT 241 AGGAAAAGAA AGTTGTACAG CTAACTGAGG CTAGTTTGAG CTACCTATCT TC Predicted gene structure (within gDNA segment 7080 to 8949): Exon 1 7853 8027 ( 175 n); cDNA 21 196 ( 176 n); score: 0.929 Intron 1 8028 8275 ( 248 n); Pd: 0.997 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 2 8276 8371 ( 96 n); cDNA 197 292 ( 96 n); score: 1.000 MATCH C06HBa0158P14.1-5+ SGN-E378828+ 0.954 271 0.928 C PGS_C06HBa0158P14.1-5+_SGN-E378828+ (7853 8027,8276 8371) Alignment (genomic DNA sequence = upper lines): GCTATGATGA AAGATCAGTT TGCAAATTAT GTAGTACAGA AGGTTCTGGA AACTTGTAGT 7912 |||||||||| |||||||||| |||||||||| || |||| | |||||||||| |||||||||| GCTATGATGA AAGATCAGTT TGCAAATTAT GTGGTAC-GG AGGTTCTGGA AACTTGTAGT 79 GATCAGC-AA CGCG-AG-CT GATCATGTCG AGAATTAAAG TTCACTTGAA TGCTCTGAAG 7969 || |||| | |||| || || |||||||||| |||||||||| |||||||||| |||||||||| GA-CAGCNNA CGCGCAGACT GATCATGTCG AGAATTAAAG TTCACTTGAA TGCTCTGAAG 138 AAATATACTT ACGGAAAGCA TATTGTCGCC CGTGTTGAAA AGCTAGTTGC TGCTGGGGGT 8029 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||| AAATATACTT ACGGAAAGCA TATTGTCGCC CGTGTTGAAA AGCTAGTTGC TGCTGGGG.. 196 GAGCTCTTTT TCTGTTTGTA CTTGTCTAGA TGGTGTTTTT GGCCATAACT TTACATGCAA 8089 .......... .......... .......... .......... .......... .......... 196 ATACAGCACT ATTGAAAAAA AAAATTCACT TATAAATCTT CCAACCTTTT TTCCAAGTGA 8149 .......... .......... .......... .......... .......... .......... 196 TACAATTCCA ACTTACAAAG ACTCGTTCTC CAACTTCCGA CTTCAATAAC TTGTTTTGTT 8209 .......... .......... .......... .......... .......... .......... 196 TTGAGGTTTC AACTGAATAT TGTCCGAACG TCTGCTAAAT GATTTTTGTA TGCTGTTGTT 8269 .......... .......... .......... .......... .......... .......... 196 TTGCAGAAAG GAGGATTGCT GCGCAGTCCC TAAGTACTGC TTAGTCATGT AGGAAAAGAA 8329 |||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ......AAAG GAGGATTGCT GCGCAGTCCC TAAGTACTGC TTAGTCATGT AGGAAAAGAA 250 AGTTGTACAG CTAACTGAGG CTAGTTTGAG CTACCTATCT TC 8371 |||||||||| |||||||||| |||||||||| |||||||||| || AGTTGTACAG CTAACTGAGG CTAGTTTGAG CTACCTATCT TC 292 hqPGS_C06HBa0158P14.1-5+_SGN-E378828+ (7853 8027,8276 8371) ******************************************************************************** EST sequence 13 -strand 449 n (File: SGN-E389508-) 1 AGAAATATAC TTACGGAAAG CATATTGTCG CCCGTGTTGA AAAGCTAGTT GCTGCTGGGG 61 AAAGGAGGAT TGCTGCGCAG TCCCTAAGTA CTGCTTAGTC ATGTAGGAAA AGAAAGTTGT 121 ACAGCTAACT GAGGCTAGTT TGAGCTACCT ATCTTCCACA TCTGTGTTTT GTTATTTGCA 181 AATAAAAGTT GTTGCATGTA CTAGAGGAGA TGTACATTGT GTAGTTAAAA AAACATAAAT 241 ATCAGGTATG CTGAAGCTCA GATGTCAAAT ATTCGAGATG GCTGTGCAGA TGGAAGTTGA 301 GGTGTAAAAA AAAAGGAAGA TAAAAAAGGC GAGGTAGTTT TACATCGACG CGACTGTACA 361 AATGTTGCCT TTTGTTGGAG AGTTGATGTT GTAAAGGAAG GTCAGAATTT TATTGTATGG 421 TATTTCGACA ATTTTATTTC TTTTATGCG Predicted gene structure (within gDNA segment 7358 to 8949): Exon 1 7968 8027 ( 60 n); cDNA 1 60 ( 60 n); score: 1.000 Intron 1 8028 8275 ( 248 n); Pd: 0.997 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 2 8276 8662 ( 387 n); cDNA 61 447 ( 387 n); score: 0.992 MATCH C06HBa0158P14.1-5+ SGN-E389508- 0.993 447 0.996 C PGS_C06HBa0158P14.1-5+_SGN-E389508- (7968 8027,8276 8662) Alignment (genomic DNA sequence = upper lines): AGAAATATAC TTACGGAAAG CATATTGTCG CCCGTGTTGA AAAGCTAGTT GCTGCTGGGG 8027 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAAATATAC TTACGGAAAG CATATTGTCG CCCGTGTTGA AAAGCTAGTT GCTGCTGGGG 60 GTGAGCTCTT TTTCTGTTTG TACTTGTCTA GATGGTGTTT TTGGCCATAA CTTTACATGC 8087 .......... .......... .......... .......... .......... .......... 60 AAATACAGCA CTATTGAAAA AAAAAATTCA CTTATAAATC TTCCAACCTT TTTTCCAAGT 8147 .......... .......... .......... .......... .......... .......... 60 GATACAATTC CAACTTACAA AGACTCGTTC TCCAACTTCC GACTTCAATA ACTTGTTTTG 8207 .......... .......... .......... .......... .......... .......... 60 TTTTGAGGTT TCAACTGAAT ATTGTCCGAA CGTCTGCTAA ATGATTTTTG TATGCTGTTG 8267 .......... .......... .......... .......... .......... .......... 60 TTTTGCAGAA AGGAGGATTG CTGCGCAGTC CCTAAGTACT GCTTAGTCAT GTAGGAAAAG 8327 || |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ........AA AGGAGGATTG CTGCGCAGTC CCTAAGTACT GCTTAGTCAT GTAGGAAAAG 112 AAAGTTGTAC AGCTAACTGA GGCTAGTTTG AGCTACCTAT CTTCCACATC TGTGTTTTGT 8387 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAGTTGTAC AGCTAACTGA GGCTAGTTTG AGCTACCTAT CTTCCACATC TGTGTTTTGT 172 TATTTGCAAA TAAAAGTTGT TGCATGTACT AGAGGAGATG TACATTGTGT AGTTAAAAAA 8447 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATTTGCAAA TAAAAGTTGT TGCATGTACT AGAGGAGATG TACATTGTGT AGTTAAAAAA 232 ACATAAATAT CAGGTATGCT GAAGCTCAGA TGTCAAATAT TCGAGATGGC TGTGCAGATG 8507 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACATAAATAT CAGGTATGCT GAAGCTCAGA TGTCAAATAT TCGAGATGGC TGTGCAGATG 292 GAAGTTGAGG TGTAAAAAAA AAGGAAGATA AAAAAGGCGA GGTAGTTTTA CATCGACGCG 8567 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAGTTGAGG TGTAAAAAAA AAGGAAGATA AAAAAGGCGA GGTAGTTTTA CATCGACGCG 352 ACTGTACAAA TGTTGCCTTT TGTTGGAGAG TTGATGTTTT AGGGGAAGGT CAGAATTTTA 8627 |||||||||| |||||||||| |||||||||| |||||||| | | ||||||| |||||||||| ACTGTACAAA TGTTGCCTTT TGTTGGAGAG TTGATGTTGT AAAGGAAGGT CAGAATTTTA 412 TTGTATGGTA TTTCGACAAT TTTATTTCTT TTATG 8662 |||||||||| |||||||||| |||||||||| ||||| TTGTATGGTA TTTCGACAAT TTTATTTCTT TTATG 447 hqPGS_C06HBa0158P14.1-5+_SGN-E389508- (7968 8027,8276 8662) ******************************************************************************** EST sequence 3 +strand 717 n (File: SGN-E389770+) 1 AGTTTCCTAG CTCCAAAAAT TAACCCAGAA AAACCTCAAA ACCAACTGTT GCCGAATTGA 61 AGATAAGATA TTGAACTCTC TTGCTTTATT CAAACTAAAA TCATGGATTA TGTTGAATTC 121 AAAATAAGCA CAAAAGTGAT ATGTGTTAGC TATAATTTCT AAACTTCTCT TAAAACTAGC 181 TGCACTGTGA CCAGCATTGA CTTGCCCTTG ACAGTTGCTA AAAGGCATTT GAAACTGAGG 241 CAAATGGTGA TGTTGCATAA GTTTTTGGTT GTTAATTTAT TCACCGTTCC AAACATATCA 301 TGGTTGGCGG GCAGAGGTAG CTGTCTCTTC TGACCTTTGT ATTTTGTTTG TGCTTTTTGA 361 CATCTTGACA TGTTTGGTCC CATTTTAACA AAACTACTCG ACTTTGGATG CTTAGACTGA 421 TGTGTTGGAA CTCTTCTCAA AAAAAGATGG AGCAAGTGGG GTGGGTGTTC GCCTGGAGTG 481 TTTTCTCTAT GTCAAGATAC CCCGAGTTTT CTATATAATT ATTTTACCTC AACAATATCA 541 TGCTATTACT CTTTGCATCT TTGGGAATAG AGTTTATCTA AGAAGTACTA CCACATGTAC 601 CTATGGTTTT GATTTTGGTA GCAGTTGTAA CATATAAACT TTTAAATAGN CTTGTTTCTC 661 TTCTCTCTTC TCTAATTGAA ATCAGTTGTG CATTGTGTTT TCACATCTTT CTTCTTT Predicted gene structure (within gDNA segment 6528 to 8454): Exon 1 7128 7844 ( 717 n); cDNA 1 717 ( 717 n); score: 0.999 MATCH C06HBa0158P14.1-5+ SGN-E389770+ 0.999 717 1.000 C PGS_C06HBa0158P14.1-5+_SGN-E389770+ (7128 7844) Alignment (genomic DNA sequence = upper lines): AGTTTCCTAG CTCCAAAAAT TAACCCAGAA AAACCTCAAA ACCAACTGTT GCCGAATTGA 7187 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTTTCCTAG CTCCAAAAAT TAACCCAGAA AAACCTCAAA ACCAACTGTT GCCGAATTGA 60 AGATAAGATA TTGAACTCTC TTGCTTTATT CAAACTAAAA TCATGGATTA TGTTGAATTC 7247 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGATAAGATA TTGAACTCTC TTGCTTTATT CAAACTAAAA TCATGGATTA TGTTGAATTC 120 AAAATAAGCA CAAAAGTGAT ATGTGTTAGC TATAATTTCT AAACTTCTCT TAAAACTAGC 7307 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAATAAGCA CAAAAGTGAT ATGTGTTAGC TATAATTTCT AAACTTCTCT TAAAACTAGC 180 TGCACTGTGA CCAGCATTGA CTTGCCCTTG ACAGTTGCTA AAAGGCATTT GAAACTGAGG 7367 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCACTGTGA CCAGCATTGA CTTGCCCTTG ACAGTTGCTA AAAGGCATTT GAAACTGAGG 240 CAAATGGTGA TGTTGCATAA GTTTTTGGTT GTTAATTTAT TCACCGTTCC AAACATATCA 7427 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAATGGTGA TGTTGCATAA GTTTTTGGTT GTTAATTTAT TCACCGTTCC AAACATATCA 300 TGGTTGGCGG GCAGAGGTAG CTGTCTCTTC TGACCTTTGT ATTTTGTTTG TGCTTTTTGA 7487 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGTTGGCGG GCAGAGGTAG CTGTCTCTTC TGACCTTTGT ATTTTGTTTG TGCTTTTTGA 360 CATCTTGACA TGTTTGGTCC CATTTTAACA AAACTACTCG ACTTTGGATG CTTAGACTGA 7547 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATCTTGACA TGTTTGGTCC CATTTTAACA AAACTACTCG ACTTTGGATG CTTAGACTGA 420 TGTGTTGGAA CTCTTCTCAA AAAAAGATGG AGCAAGTGGG GTGGGTGTTC GCCTGGAGTG 7607 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTGTTGGAA CTCTTCTCAA AAAAAGATGG AGCAAGTGGG GTGGGTGTTC GCCTGGAGTG 480 TTTTCTCTAT GTCAAGATAC CCCGAGTTTT CTATATAATT ATTTTACCTC AACAATATCA 7667 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTTCTCTAT GTCAAGATAC CCCGAGTTTT CTATATAATT ATTTTACCTC AACAATATCA 540 TGCTATTACT CTTTGCATCT TTGGGAATAG AGTTTATCTA AGAAGTACTA CCACATGTAC 7727 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCTATTACT CTTTGCATCT TTGGGAATAG AGTTTATCTA AGAAGTACTA CCACATGTAC 600 CTATGGTTTT GATTTTGGTA GCAGTTGTAA CATATAAACT TTTAAATAGT CTTGTTTCTC 7787 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| |||||||||| CTATGGTTTT GATTTTGGTA GCAGTTGTAA CATATAAACT TTTAAATAGN CTTGTTTCTC 660 TTCTCTCTTC TCTAATTGAA ATCAGTTGTG CATTGTGTTT TCACATCTTT CTTCTTT 7844 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||| TTCTCTCTTC TCTAATTGAA ATCAGTTGTG CATTGTGTTT TCACATCTTT CTTCTTT 717 hqPGS_C06HBa0158P14.1-5+_SGN-E389770+ (7128 7844) ******************************************************************************** EST sequence 4 +strand 701 n (File: SGN-E550164+) 1 AGTTTCCTAG CTCCAAAAAT TAACCCAGAA AAACCTCAAA ACCAACTGTT GCCGAATTGA 61 AGATAAGATA TTGAACTCTC TTGCTTTATT CAAACTAAAA TCATGGATTA TGTTGAATTC 121 AAAATAAGCA CAAAAGTGAT ATGTGTTAGC TATAATTTCT AAACTTCTCT TAAAACTAGC 181 TGCACTGTGA CCAGCATTGA CTTGCCCTTG ACAGTTGCTA AAAGGCATTT GAAACTGAGG 241 CAAATGGTGA TGTTGCATAA GTTTTTGGTT GTTAATTTAT TCACCGTTCC AAACATATCA 301 TGGTTGGCGG GCAGAGGTAG CTGTCTCTTC TGACCTTTGT ATTTTGTTTG TGCTTTTTGA 361 CATCTTGACA TGTTTGGTCC CATTTTAACA AAACTACTCG ACTTTGGATG CTTAGACTGA 421 TGTGTTGGAA CTCTTCTCAA AAAAAGATGG AGCAAGTGGG GTGGGTGTTC GCCTGGAGTG 481 TTTTCTCTAT GTCAAGATAC CCCGAGTTTT CTATATAATT ATTTTACCTC AACAATATCA 541 TGCTATTACT CTTTGCATCT TTGGGAATAA GTTTTATCTA AGAAGTACTA CCACATGTAC 601 CTATGGTTTT GATTTTGGTA GCAGTTGTAA CATATAAACT TTTAAATAGN CTTGTTTCTC 661 TTCTCTCTTC TCTAATNGAA ATCAGTTGTG CATTGTGTTT T Predicted gene structure (within gDNA segment 6528 to 8438): Exon 1 7128 7828 ( 701 n); cDNA 1 701 ( 701 n); score: 0.993 MATCH C06HBa0158P14.1-5+ SGN-E550164+ 0.993 701 1.000 C PGS_C06HBa0158P14.1-5+_SGN-E550164+ (7128 7828) Alignment (genomic DNA sequence = upper lines): AGTTTCCTAG CTCCAAAAAT TAACCCAGAA AAACCTCAAA ACCAACTGTT GCCGAATTGA 7187 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTTTCCTAG CTCCAAAAAT TAACCCAGAA AAACCTCAAA ACCAACTGTT GCCGAATTGA 60 AGATAAGATA TTGAACTCTC TTGCTTTATT CAAACTAAAA TCATGGATTA TGTTGAATTC 7247 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGATAAGATA TTGAACTCTC TTGCTTTATT CAAACTAAAA TCATGGATTA TGTTGAATTC 120 AAAATAAGCA CAAAAGTGAT ATGTGTTAGC TATAATTTCT AAACTTCTCT TAAAACTAGC 7307 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAATAAGCA CAAAAGTGAT ATGTGTTAGC TATAATTTCT AAACTTCTCT TAAAACTAGC 180 TGCACTGTGA CCAGCATTGA CTTGCCCTTG ACAGTTGCTA AAAGGCATTT GAAACTGAGG 7367 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCACTGTGA CCAGCATTGA CTTGCCCTTG ACAGTTGCTA AAAGGCATTT GAAACTGAGG 240 CAAATGGTGA TGTTGCATAA GTTTTTGGTT GTTAATTTAT TCACCGTTCC AAACATATCA 7427 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAATGGTGA TGTTGCATAA GTTTTTGGTT GTTAATTTAT TCACCGTTCC AAACATATCA 300 TGGTTGGCGG GCAGAGGTAG CTGTCTCTTC TGACCTTTGT ATTTTGTTTG TGCTTTTTGA 7487 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGTTGGCGG GCAGAGGTAG CTGTCTCTTC TGACCTTTGT ATTTTGTTTG TGCTTTTTGA 360 CATCTTGACA TGTTTGGTCC CATTTTAACA AAACTACTCG ACTTTGGATG CTTAGACTGA 7547 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATCTTGACA TGTTTGGTCC CATTTTAACA AAACTACTCG ACTTTGGATG CTTAGACTGA 420 TGTGTTGGAA CTCTTCTCAA AAAAAGATGG AGCAAGTGGG GTGGGTGTTC GCCTGGAGTG 7607 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTGTTGGAA CTCTTCTCAA AAAAAGATGG AGCAAGTGGG GTGGGTGTTC GCCTGGAGTG 480 TTTTCTCTAT GTCAAGATAC CCCGAGTTTT CTATATAATT ATTTTACCTC AACAATATCA 7667 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTTCTCTAT GTCAAGATAC CCCGAGTTTT CTATATAATT ATTTTACCTC AACAATATCA 540 TGCTATTACT CTTTGCATCT TTGGGAATAG AGTTTATCTA AGAAGTACTA CCACATGTAC 7727 |||||||||| |||||||||| ||||||||| |||||||| |||||||||| |||||||||| TGCTATTACT CTTTGCATCT TTGGGAATAA GTTTTATCTA AGAAGTACTA CCACATGTAC 600 CTATGGTTTT GATTTTGGTA GCAGTTGTAA CATATAAACT TTTAAATAGT CTTGTTTCTC 7787 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| |||||||||| CTATGGTTTT GATTTTGGTA GCAGTTGTAA CATATAAACT TTTAAATAGN CTTGTTTCTC 660 TTCTCTCTTC TCTAATTGAA ATCAGTTGTG CATTGTGTTT T 7828 |||||||||| |||||| ||| |||||||||| |||||||||| | TTCTCTCTTC TCTAATNGAA ATCAGTTGTG CATTGTGTTT T 701 hqPGS_C06HBa0158P14.1-5+_SGN-E550164+ (7128 7828) ******************************************************************************** EST sequence 8 +strand 625 n (File: SGN-E235530+) 1 GTTTCCTAGC TCCAAAAATT AACCCAGAAA AACCTCAAAA CCAACTGTTG CCGAATTGAA 61 GATAAGATAT TGAACTCTCT TGCTTTATTC AAACTAAAAT CATGGATTAT GTTGAATTCA 121 AAATAAGCAC AAAAGTGATA TGTGTTAGCT ATAATTTCTA AACTTCTCTT AAAACTAGCT 181 GCACTGTGAC CAGCATTGAC TTGCCCTTGA CAGTTGCTAA AAGGCATTTG AAACTGAGGC 241 AAATGGTGAT GTTGCATAAG TTTTTGGTTG TTAATTTATT CACCGTTCCA AACATATCAT 301 GGTTGGCGGG CAGAGGTAGC TGTCTCTTCT GACCTTTGTA TTTTGTTTGT GCTTTTTGAC 361 ATCTTGACAT GTTTGGTCCC ATTTTAACAA AACTACTCGA CTTTGGATGC TTAGACTGAT 421 GTGTTGGAAC TCTTCTCAAA AAAAGATGGA GCAAGTGGGG TGGGTGTTCG CCTGGAGTGT 481 TTTCTCTATG TCAAGATACC CCGAGTTTTC TATATAATTA TTTTACCTCA ACAATATCAT 541 GCTATTACTC TTTGCATCTT TGGGAATAGA GTTTATCTAA GAAGTACTAC CACATGTACC 601 TATGGTTTTG ATTTTGGTAG CAGTT Predicted gene structure (within gDNA segment 6529 to 8363): Exon 1 7129 7753 ( 625 n); cDNA 1 625 ( 625 n); score: 1.000 MATCH C06HBa0158P14.1-5+ SGN-E235530+ 1.000 625 1.000 C PGS_C06HBa0158P14.1-5+_SGN-E235530+ (7129 7753) Alignment (genomic DNA sequence = upper lines): GTTTCCTAGC TCCAAAAATT AACCCAGAAA AACCTCAAAA CCAACTGTTG CCGAATTGAA 7188 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTTCCTAGC TCCAAAAATT AACCCAGAAA AACCTCAAAA CCAACTGTTG CCGAATTGAA 60 GATAAGATAT TGAACTCTCT TGCTTTATTC AAACTAAAAT CATGGATTAT GTTGAATTCA 7248 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATAAGATAT TGAACTCTCT TGCTTTATTC AAACTAAAAT CATGGATTAT GTTGAATTCA 120 AAATAAGCAC AAAAGTGATA TGTGTTAGCT ATAATTTCTA AACTTCTCTT AAAACTAGCT 7308 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAATAAGCAC AAAAGTGATA TGTGTTAGCT ATAATTTCTA AACTTCTCTT AAAACTAGCT 180 GCACTGTGAC CAGCATTGAC TTGCCCTTGA CAGTTGCTAA AAGGCATTTG AAACTGAGGC 7368 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCACTGTGAC CAGCATTGAC TTGCCCTTGA CAGTTGCTAA AAGGCATTTG AAACTGAGGC 240 AAATGGTGAT GTTGCATAAG TTTTTGGTTG TTAATTTATT CACCGTTCCA AACATATCAT 7428 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAATGGTGAT GTTGCATAAG TTTTTGGTTG TTAATTTATT CACCGTTCCA AACATATCAT 300 GGTTGGCGGG CAGAGGTAGC TGTCTCTTCT GACCTTTGTA TTTTGTTTGT GCTTTTTGAC 7488 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGTTGGCGGG CAGAGGTAGC TGTCTCTTCT GACCTTTGTA TTTTGTTTGT GCTTTTTGAC 360 ATCTTGACAT GTTTGGTCCC ATTTTAACAA AACTACTCGA CTTTGGATGC TTAGACTGAT 7548 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCTTGACAT GTTTGGTCCC ATTTTAACAA AACTACTCGA CTTTGGATGC TTAGACTGAT 420 GTGTTGGAAC TCTTCTCAAA AAAAGATGGA GCAAGTGGGG TGGGTGTTCG CCTGGAGTGT 7608 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGTTGGAAC TCTTCTCAAA AAAAGATGGA GCAAGTGGGG TGGGTGTTCG CCTGGAGTGT 480 TTTCTCTATG TCAAGATACC CCGAGTTTTC TATATAATTA TTTTACCTCA ACAATATCAT 7668 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTCTCTATG TCAAGATACC CCGAGTTTTC TATATAATTA TTTTACCTCA ACAATATCAT 540 GCTATTACTC TTTGCATCTT TGGGAATAGA GTTTATCTAA GAAGTACTAC CACATGTACC 7728 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTATTACTC TTTGCATCTT TGGGAATAGA GTTTATCTAA GAAGTACTAC CACATGTACC 600 TATGGTTTTG ATTTTGGTAG CAGTT 7753 |||||||||| |||||||||| ||||| TATGGTTTTG ATTTTGGTAG CAGTT 625 hqPGS_C06HBa0158P14.1-5+_SGN-E235530+ (7129 7753) ******************************************************************************** EST sequence 9 +strand 454 n (File: SGN-E320306+) 1 AGAACTTCTC AGTTTTTTTT TTTTTTTTTT TTTCAAACAA ACACAAATTT CACTGAAATA 61 CACACAACTT ACATACATAT TACATAAACC CAACTCCGGC GCCGGCGATG ACAGAAAATT 121 CATGATTTTT TTGTGAAGAA GAAGATTGAA TTGTGTATAT GAGAGATGGC TGTGCAGATG 181 GAAGTTGAGG TGTAAAAAAA AAGGAAGATA AAAAAGGCGA GGTAGTTTTA CATCGACGCG 241 ACTGTACAAA TGTTGCCTTT TGTTGGAGAG TTGATGTTTT AGGGGAAGGT CAGAATTTTA 301 TTGTATGGTA TTTCGACAAT TTTATTTCTT TTATGGCCAA GTATATTCTA CTTCATCTCA 361 AATCCTCAGT TTTCTACTCT TTTTGTGGAT TTATTTGATA CTCTTTAATC TGCAATTGTA 421 CTTGCTTGTG TTTGTTCAAA AAAAAAAAAA AAAA Predicted gene structure (within gDNA segment 6270 to 8949): Exon 1 7853 7869 ( 17 n); cDNA 105 121 ( 17 n); score: 0.588 Intron 1 7870 8058 ( 189 n); Pd: 0.000 (s: 0), Pa: 0.595 (s: 0) Exon 2 8059 8070 ( 12 n); cDNA 122 133 ( 12 n); score: 0.833 Intron 2 8071 8460 ( 390 n); Pd: 0.000 (s: 0), Pa: 0.987 (s: 0.68) Exon 3 8461 8764 ( 304 n); cDNA 134 437 ( 304 n); score: 0.947 PPA cDNA 438 454 MATCH C06HBa0158P14.1-5+ SGN-E320306+ 0.947 333 0.733 C PGS_C06HBa0158P14.1-5+_SGN-E320306+ (7853 7869,8059 8070,8461 8764) Alignment (genomic DNA sequence = upper lines): GCTATGATGA AAGATCAGTT TGCAAATTAT GTAGTACAGA AGGTTCTGGA AACTTGTAGT 7912 || |||| || || GCGATGACAG AAAATTC... .......... .......... .......... .......... 121 GATCAGCAAC GCGAGCTGAT CATGTCGAGA ATTAAAGTTC ACTTGAATGC TCTGAAGAAA 7972 .......... .......... .......... .......... .......... .......... 121 TATACTTACG GAAAGCATAT TGTCGCCCGT GTTGAAAAGC TAGTTGCTGC TGGGGGTGAG 8032 .......... .......... .......... .......... .......... .......... 121 CTCTTTTTCT GTTTGTACTT GTCTAGATGG TGTTTTTGGC CATAACTTTA CATGCAAATA 8092 ||| | |||||| .......... .......... ......ATGA TTTTTTTG.. .......... .......... 133 CAGCACTATT GAAAAAAAAA ATTCACTTAT AAATCTTCCA ACCTTTTTTC CAAGTGATAC 8152 .......... .......... .......... .......... .......... .......... 133 AATTCCAACT TACAAAGACT CGTTCTCCAA CTTCCGACTT CAATAACTTG TTTTGTTTTG 8212 .......... .......... .......... .......... .......... .......... 133 AGGTTTCAAC TGAATATTGT CCGAACGTCT GCTAAATGAT TTTTGTATGC TGTTGTTTTG 8272 .......... .......... .......... .......... .......... .......... 133 CAGAAAGGAG GATTGCTGCG CAGTCCCTAA GTACTGCTTA GTCATGTAGG AAAAGAAAGT 8332 .......... .......... .......... .......... .......... .......... 133 TGTACAGCTA ACTGAGGCTA GTTTGAGCTA CCTATCTTCC ACATCTGTGT TTTGTTATTT 8392 .......... .......... .......... .......... .......... .......... 133 GCAAATAAAA GTTGTTGCAT GTACTAGAGG AGATGTACAT TGTGTAGTTA AAAAAACATA 8452 .......... .......... .......... .......... .......... .......... 133 AATATCAGGT ATGCTGAAGC TCAGATGTCA AATATTCGAG ATGGCTGTGC AGATGGAAGT 8512 | | |||| | || |||| ||| |||||||||| |||||||||| ........TG AAGAAGAAGA TTGAATTGTG TATATGAGAG ATGGCTGTGC AGATGGAAGT 185 TGAGGTGTAA AAAAAAAGGA AGATAAAAAA GGCGAGGTAG TTTTACATCG ACGCGACTGT 8572 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAGGTGTAA AAAAAAAGGA AGATAAAAAA GGCGAGGTAG TTTTACATCG ACGCGACTGT 245 ACAAATGTTG CCTTTTGTTG GAGAGTTGAT GTTTTAGGGG AAGGTCAGAA TTTTATTGTA 8632 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACAAATGTTG CCTTTTGTTG GAGAGTTGAT GTTTTAGGGG AAGGTCAGAA TTTTATTGTA 305 TGGTATTTCG ACAATTTTAT TTCTTTTATG GCCAAGTATA TTCTACTTCA TCTCAAATCC 8692 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGTATTTCG ACAATTTTAT TTCTTTTATG GCCAAGTATA TTCTACTTCA TCTCAAATCC 365 TCAGTTTTCT ACTCTTTTTG TGGATTTATT TGATACTCTT TAATCTGCAA TTGTACTTGC 8752 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCAGTTTTCT ACTCTTTTTG TGGATTTATT TGATACTCTT TAATCTGCAA TTGTACTTGC 425 TTGTGTTTGT TC 8764 |||||||||| || TTGTGTTTGT TC 437 hqPGS_C06HBa0158P14.1-5+_SGN-E320306+ (8461 8764) Total number of EST alignments reported: 14 ________________________________________________________________________________ Predicted gene locations (1) in segment 1 to 8949: PGL 1 (+ strand): 4313 8764 AGS-1 (4313 4365,4452 4593,4707 4814,5008 5220,5305 5415,6242 6436,7853 8027,8276 8764) SCR (e 0.906 d 1.000 a 0.959,e 0.901 d 0.926 a 0.991,e 0.889 d 0.789 a 0.998,e 0.873 d 0.993 a 0.995,e 1.000 d 0.923 a 0.961,e 1.000 d 1.000 a 0.996,e 1.000 d 0.997 a 0.999,e 0.992) Exon 1 4313 4365 ( 53 n); score: 0.906 Intron 1 4366 4451 ( 86 n); Pd: 1.000 Pa: 0.959 Exon 2 4452 4593 ( 142 n); score: 0.901 Intron 2 4594 4706 ( 113 n); Pd: 0.926 Pa: 0.991 Exon 3 4707 4814 ( 108 n); score: 0.889 Intron 3 4815 5007 ( 193 n); Pd: 0.789 Pa: 0.998 Exon 4 5008 5220 ( 213 n); score: 0.873 Intron 4 5221 5304 ( 84 n); Pd: 0.993 Pa: 0.995 Exon 5 5305 5415 ( 111 n); score: 1.000 Intron 5 5416 6241 ( 826 n); Pd: 0.923 Pa: 0.961 Exon 6 6242 6436 ( 195 n); score: 1.000 Intron 6 6437 7852 (1416 n); Pd: 1.000 Pa: 0.996 Exon 7 7853 8027 ( 175 n); score: 1.000 Intron 7 8028 8275 ( 248 n); Pd: 0.997 Pa: 0.999 Exon 8 8276 8764 ( 489 n); score: 0.992 PGS (4313 4365,4452 4593,4707 4814,5008 5220,5305 5415) SGN-E317086+ PGS (4797 4814,5008 5220,5305 5415,6242 6272) SGN-E252587+ PGS (5180 5220,5305 5415,6242 6436,7853 7994) SGN-E204681+ PGS (5356 5415,6242 6436,7853 8027,8276 8532) SGN-E212554+ PGS (6257 6436,7853 7979) SGN-E379803- PGS (6353 6436,7853 8027,8276 8689) SGN-E349060+ PGS (6353 6436,7853 8027,8276 8586) SGN-E349096+ PGS (7853 8027,8276 8371) SGN-E378828+ PGS (7968 8027,8276 8662) SGN-E389508- PGS (8461 8764) SGN-E320306+ 3-phase translation of AGS-1 (+strand): . . . . . . : 4313 AAGGCCAAGTGTTTTGAACTTTCAGAAATTGCAGGTCACGTTGTTGAGTTCAG : TGCTGAC K A K C F E L S E I A G H V V E F S : A D R P S V L N F Q K L Q V T L L S S : V L T G Q V F - T F R N C R S R C - V Q : C - . . . . . . 4459 CAGTATGGGAGCCGATTCATTCAACAAAAACTCGAAACTGCAACCACTGAGGAAAAAAAC Q Y G S R F I Q Q K L E T A T T E E K N S M G A D S F N K N S K L Q P L R K K T P V W E P I H S T K T R N C N H - G K K . . . . . . 4519 ATGGTTTTCCAGGAAATTTTCCCCCAAGCTCTTACTTTGATGACTGATGTCTTTGGGAAT M V F Q E I F P Q A L T L M T D V F G N W F S R K F S P K L L L - - L M S L G I H G F P G N F P P S S Y F D D - C L W E . . : . . . . 4579 TATGTAATCCAGAAG : TTTTTTGAACATGGAATGGCATCTCAGAGGAGAGAATTGGCTAGC Y V I Q K : F F E H G M A S Q R R E L A S M - S R S : F L N M E W H L R G E N W L A L C N P E : V F - T W N G I S E E R I G - . . . . . . 4752 ATACTCTTTGGGCATGTTCTAACGCTGAGCCTTCAAATGTATGGTTGTCGTGTGATACAA I L F G H V L T L S L Q M Y G C R V I Q Y S L G M F - R - A F K C M V V V - Y K H T L W A C S N A E P S N V W L S C D T . : . . . . . 4812 AAG : GCAATAGAAGTAGTTGACGTGGACCAGAAAATTAAAATGGTTGAGGAGCTTGATGGT K : A I E V V D V D Q K I K M V E E L D G R : Q - K - L T W T R K L K W L R S L M V K : G N R S S - R G P E N - N G - G A - W . . . . . . 5065 CATGTTATGCGCTGTGTACGAGATCAGAATGGTAATCATGTCATTCAGAAATGTATTGAA H V M R C V R D Q N G N H V I Q K C I E M L C A V Y E I R M V I M S F R N V L N S C Y A L C T R S E W - S C H S E M Y - . . . . . . 5125 TGCGTACCAGAACTTCATATCCAATTTATCGTCTCAACATTTTTTGGACAAGTTATTACT C V P E L H I Q F I V S T F F G Q V I T A Y Q N F I S N L S S Q H F L D K L L L M R T R T S Y P I Y R L N I F W T S Y Y . . . . : . . 5185 CTCTCAACCCATCCATATGGCTGTCGAGTTATACAG : AGAGTATTGGAACACTGTGACAAT L S T H P Y G C R V I Q : R V L E H C D N S Q P I H M A V E L Y R : E Y W N T V T I S L N P S I W L S S Y T : E S I G T L - Q . . . . . . 5329 CCAGAAACTCAAAGTAAAGTGATGGAAGAAATCCTTGGATCTGTAAGCATGTTGGCACAA P E T Q S K V M E E I L G S V S M L A Q Q K L K V K - W K K S L D L - A C W H K S R N S K - S D G R N P W I C K H V G T . . . : . . . 5389 GATCAATATGGCAATTATGTTGTTCAG : CATGTATTGGAGCACGGGAAGCCGGATGAGCGC D Q Y G N Y V V Q : H V L E H G K P D E R I N M A I M L F S : M Y W S T G S R M S A R S I W Q L C C S : A C I G A R E A G - A . . . . . . 6275 TCTACTATAATTCAGGAACTAGCTGGGAAGATTGTACAAATGAGCCAGCAGAAATTTGCT S T I I Q E L A G K I V Q M S Q Q K F A L L - F R N - L G R L Y K - A S R N L L L Y Y N S G T S W E D C T N E P A E I C . . . . . . 6335 TCGAACGTTGTTGAGAAGTGTTTAACTTTCTGTAATTCCAGTGAACGACAGCTATTGGTG S N V V E K C L T F C N S S E R Q L L V R T L L R S V - L S V I P V N D S Y W - F E R C - E V F N F L - F Q - T T A I G . . . . . : . 6395 AATGAGATGCTTGGCACAACTGATGAAAATGAGCCTCTTCAG : GCTATGATGAAAGATCAG N E M L G T T D E N E P L Q : A M M K D Q M R C L A Q L M K M S L F R : L - - K I S E - D A W H N - - K - A S S : G Y D E R S . . . . . . 7871 TTTGCAAATTATGTAGTACAGAAGGTTCTGGAAACTTGTAGTGATCAGCAACGCGAGCTG F A N Y V V Q K V L E T C S D Q Q R E L L Q I M - Y R R F W K L V V I S N A S - V C K L C S T E G S G N L - - S A T R A . . . . . . 7931 ATCATGTCGAGAATTAAAGTTCACTTGAATGCTCTGAAGAAATATACTTACGGAAAGCAT I M S R I K V H L N A L K K Y T Y G K H S C R E L K F T - M L - R N I L T E S I D H V E N - S S L E C S E E I Y L R K A . . . . : . . 7991 ATTGTCGCCCGTGTTGAAAAGCTAGTTGCTGCTGGGG : AAAGGAGGATTGCTGCGCAGTCC I V A R V E K L V A A G : E R R I A A Q S L S P V L K S - L L L G : K G G L L R S P Y C R P C - K A S C C W G : K E D C C A V . . . . . . 8299 CTAAGTACTGCTTAGTCATGTAGGAAAAGAAAGTTGTACAGCTAACTGAGGCTAGTTTGA L S T A - S C R K R K L Y S - L R L V - - V L L S H V G K E S C T A N - G - F E P K Y C L V M - E K K V V Q L T E A S L . . . . . . 8359 GCTACCTATCTTCCACATCTGTGTTTTGTTATTTGCAAATAAAAGTTGTTGCATGTACTA A T Y L P H L C F V I C K - K L L H V L L P I F H I C V L L F A N K S C C M Y - S Y L S S T S V F C Y L Q I K V V A C T . . . . . . 8419 GAGGAGATGTACATTGTGTAGTTAAAAAAACATAAATATCAGGTATGCTGAAGCTCAGAT E E M Y I V - L K K H K Y Q V C - S S D R R C T L C S - K N I N I R Y A E A Q M R G D V H C V V K K T - I S G M L K L R . . . . . . 8479 GTCAAATATTCGAGATGGCTGTGCAGATGGAAGTTGAGGTGTAAAAAAAAAGGAAGATAA V K Y S R W L C R W K L R C K K K G R - S N I R D G C A D G S - G V K K K E D K C Q I F E M A V Q M E V E V - K K R K I . . . . . . 8539 AAAAGGCGAGGTAGTTTTACATCGACGCGACTGTACAAATGTTGCCTTTTGTTGGAGAGT K R R G S F T S T R L Y K C C L L L E S K G E V V L H R R D C T N V A F C W R V K K A R - F Y I D A T V Q M L P F V G E . . . . . . 8599 TGATGTTTTAGGGGAAGGTCAGAATTTTATTGTATGGTATTTCGACAATTTTATTTCTTT - C F R G R S E F Y C M V F R Q F Y F F D V L G E G Q N F I V W Y F D N F I S F L M F - G K V R I L L Y G I S T I L F L . . . . . . 8659 TATGGCCAAGTATATTCTACTTCATCTCAAATCCTCAGTTTTCTACTCTTTTTGTGGATT Y G Q V Y S T S S Q I L S F L L F L W I M A K Y I L L H L K S S V F Y S F C G F L W P S I F Y F I S N P Q F S T L F V D . . . . . 8719 TATTTGATACTCTTTAATCTGCAATTGTACTTGCTTGTGTTTGTTC Y L I L F N L Q L Y L L V F V I - Y S L I C N C T C L C L F L F D T L - S A I V L A C V C Maximal non-overlapping open reading frames (>= 64 codons): >C06HBa0158P14.1-5+_PGL-1_AGS-1_PPS_1 (4313 4365,4452 4593,4707 4814,5008 5220,5305 5415,6242 6436,7853 8027,8276 8313) (frame '1'; 1032 bp, 344 residues) 1 KAKCFELSEI AGHVVEFSAD QYGSRFIQQK LETATTEEKN MVFQEIFPQA LTLMTDVFGN 61 YVIQKFFEHG MASQRRELAS ILFGHVLTLS LQMYGCRVIQ KAIEVVDVDQ KIKMVEELDG 121 HVMRCVRDQN GNHVIQKCIE CVPELHIQFI VSTFFGQVIT LSTHPYGCRV IQRVLEHCDN 181 PETQSKVMEE ILGSVSMLAQ DQYGNYVVQH VLEHGKPDER STIIQELAGK IVQMSQQKFA 241 SNVVEKCLTF CNSSERQLLV NEMLGTTDEN EPLQAMMKDQ FANYVVQKVL ETCSDQQREL 301 IMSRIKVHLN ALKKYTYGKH IVARVEKLVA AGERRIAAQS LSTA- >C06HBa0158P14.1-5+_PGL-1_AGS-1_PPS_2 (8516 8725) (frame '2'; 207 bp, 69 residues) 1 GVKKKEDKKG EVVLHRRDCT NVAFCWRVDV LGEGQNFIVW YFDNFISFMA KYILLHLKSS 61 VFYSFCGFI- AGS-2 (7128 8027,8276 8644) SCR (e 1.000 d 0.997 a 0.999,e 1.000) Exon 1 7128 8027 ( 900 n); score: 1.000 Intron 1 8028 8275 ( 248 n); Pd: 0.997 Pa: 0.999 Exon 2 8276 8644 ( 369 n); score: 1.000 PGS (7128 7844) SGN-E389770+ PGS (7128 7828) SGN-E550164+ PGS (7129 7753) SGN-E235530+ PGS (7810 8027,8276 8644) SGN-E550415- 3-phase translation of AGS-2 (+strand): . . . . . . 7128 AGTTTCCTAGCTCCAAAAATTAACCCAGAAAAACCTCAAAACCAACTGTTGCCGAATTGA S F L A P K I N P E K P Q N Q L L P N - V S - L Q K L T Q K N L K T N C C R I E F P S S K N - P R K T S K P T V A E L . . . . . . 7188 AGATAAGATATTGAACTCTCTTGCTTTATTCAAACTAAAATCATGGATTATGTTGAATTC R - D I E L S C F I Q T K I M D Y V E F D K I L N S L A L F K L K S W I M L N S K I R Y - T L L L Y S N - N H G L C - I . . . . . . 7248 AAAATAAGCACAAAAGTGATATGTGTTAGCTATAATTTCTAAACTTCTCTTAAAACTAGC K I S T K V I C V S Y N F - T S L K T S K - A Q K - Y V L A I I S K L L L K L A Q N K H K S D M C - L - F L N F S - N - . . . . . . 7308 TGCACTGTGACCAGCATTGACTTGCCCTTGACAGTTGCTAAAAGGCATTTGAAACTGAGG C T V T S I D L P L T V A K R H L K L R A L - P A L T C P - Q L L K G I - N - G L H C D Q H - L A L D S C - K A F E T E . . . . . . 7368 CAAATGGTGATGTTGCATAAGTTTTTGGTTGTTAATTTATTCACCGTTCCAAACATATCA Q M V M L H K F L V V N L F T V P N I S K W - C C I S F W L L I Y S P F Q T Y H A N G D V A - V F G C - F I H R S K H I . . . . . . 7428 TGGTTGGCGGGCAGAGGTAGCTGTCTCTTCTGACCTTTGTATTTTGTTTGTGCTTTTTGA W L A G R G S C L F - P L Y F V C A F - G W R A E V A V S S D L C I L F V L F D M V G G Q R - L S L L T F V F C L C F L . . . . . . 7488 CATCTTGACATGTTTGGTCCCATTTTAACAAAACTACTCGACTTTGGATGCTTAGACTGA H L D M F G P I L T K L L D F G C L D - I L T C L V P F - Q N Y S T L D A - T D T S - H V W S H F N K T T R L W M L R L . . . . . . 7548 TGTGTTGGAACTCTTCTCAAAAAAAGATGGAGCAAGTGGGGTGGGTGTTCGCCTGGAGTG C V G T L L K K R W S K W G G C S P G V V L E L F S K K D G A S G V G V R L E C M C W N S S Q K K M E Q V G W V F A W S . . . . . . 7608 TTTTCTCTATGTCAAGATACCCCGAGTTTTCTATATAATTATTTTACCTCAACAATATCA F S L C Q D T P S F L Y N Y F T S T I S F L Y V K I P R V F Y I I I L P Q Q Y H V F S M S R Y P E F S I - L F Y L N N I . . . . . . 7668 TGCTATTACTCTTTGCATCTTTGGGAATAGAGTTTATCTAAGAAGTACTACCACATGTAC C Y Y S L H L W E - S L S K K Y Y H M Y A I T L C I F G N R V Y L R S T T T C T M L L L F A S L G I E F I - E V L P H V . . . . . . 7728 CTATGGTTTTGATTTTGGTAGCAGTTGTAACATATAAACTTTTAAATAGTCTTGTTTCTC L W F - F W - Q L - H I N F - I V L F L Y G F D F G S S C N I - T F K - S C F S P M V L I L V A V V T Y K L L N S L V S . . . . . . 7788 TTCTCTCTTCTCTAATTGAAATCAGTTGTGCATTGTGTTTTCACATCTTTCTTCTTTTTA F S L L - L K S V V H C V F T S F F F L S L F S N - N Q L C I V F S H L S S F Y L L S S L I E I S C A L C F H I F L L F . . . . . . 7848 TCCAGGCTATGATGAAAGATCAGTTTGCAAATTATGTAGTACAGAAGGTTCTGGAAACTT S R L - - K I S L Q I M - Y R R F W K L P G Y D E R S V C K L C S T E G S G N L I Q A M M K D Q F A N Y V V Q K V L E T . . . . . . 7908 GTAGTGATCAGCAACGCGAGCTGATCATGTCGAGAATTAAAGTTCACTTGAATGCTCTGA V V I S N A S - S C R E L K F T - M L - - - S A T R A D H V E N - S S L E C S E C S D Q Q R E L I M S R I K V H L N A L . . . . . . : 7968 AGAAATATACTTACGGAAAGCATATTGTCGCCCGTGTTGAAAAGCTAGTTGCTGCTGGGG : R N I L T E S I L S P V L K S - L L L G : E I Y L R K A Y C R P C - K A S C C W G : K K Y T Y G K H I V A R V E K L V A A G : . . . . . . 8276 AAAGGAGGATTGCTGCGCAGTCCCTAAGTACTGCTTAGTCATGTAGGAAAAGAAAGTTGT K G G L L R S P - V L L S H V G K E S C K E D C C A V P K Y C L V M - E K K V V E R R I A A Q S L S T A - S C R K R K L . . . . . . 8336 ACAGCTAACTGAGGCTAGTTTGAGCTACCTATCTTCCACATCTGTGTTTTGTTATTTGCA T A N - G - F E L P I F H I C V L L F A Q L T E A S L S Y L S S T S V F C Y L Q Y S - L R L V - A T Y L P H L C F V I C . . . . . . 8396 AATAAAAGTTGTTGCATGTACTAGAGGAGATGTACATTGTGTAGTTAAAAAAACATAAAT N K S C C M Y - R R C T L C S - K N I N I K V V A C T R G D V H C V V K K T - I K - K L L H V L E E M Y I V - L K K H K . . . . . . 8456 ATCAGGTATGCTGAAGCTCAGATGTCAAATATTCGAGATGGCTGTGCAGATGGAAGTTGA I R Y A E A Q M S N I R D G C A D G S - S G M L K L R C Q I F E M A V Q M E V E Y Q V C - S S D V K Y S R W L C R W K L . . . . . . 8516 GGTGTAAAAAAAAAGGAAGATAAAAAAGGCGAGGTAGTTTTACATCGACGCGACTGTACA G V K K K E D K K G E V V L H R R D C T V - K K R K I K K A R - F Y I D A T V Q R C K K K G R - K R R G S F T S T R L Y . . . . . . 8576 AATGTTGCCTTTTGTTGGAGAGTTGATGTTTTAGGGGAAGGTCAGAATTTTATTGTATGG N V A F C W R V D V L G E G Q N F I V W M L P F V G E L M F - G K V R I L L Y G K C C L L L E S - C F R G R S E F Y C M . 8636 TATTTCGAC Y F D I S V F R Maximal non-overlapping open reading frames (>= 64 codons): >C06HBa0158P14.1-5+_PGL-1_AGS-2_PPS_1 (7709 8027,8276 8313) (frame '0'; 354 bp, 118 residues) 1 EVLPHVPMVL ILVAVVTYKL LNSLVSLLSS LIEISCALCF HIFLLFIQAM MKDQFANYVV 61 QKVLETCSDQ QRELIMSRIK VHLNALKKYT YGKHIVARVE KLVAAGERRI AAQSLSTA- ... finished at: Mon Aug 28 22:10:23 2006 ________________________________________________________________________________ Sequence 6: C06HBa0158P14.1-6, from 1 to 3732, both strands analyzed. ... started at: Mon Aug 28 22:10:23 2006 EST library file: /tmp/cxgn-bacpublish-resources-E8LUak/sgn_ests; matching gDNA +strand ... ... found all matches, elapsed seconds = 4 ... matches indexed, elapsed seconds = 4 HitsTableSize = 0 EST library file: /tmp/cxgn-bacpublish-resources-E8LUak/sgn_ests; matching gDNA -strand ... ... found all matches, elapsed seconds = 4 ... matches indexed, elapsed seconds = 4 HitsTableSize = 0 No significant EST matches were found. ... finished at: Mon Aug 28 22:10:30 2006 ________________________________________________________________________________ Sequence 7: C06HBa0158P14.1-7, from 1 to 6992, both strands analyzed. ... started at: Mon Aug 28 22:10:30 2006 EST library file: /tmp/cxgn-bacpublish-resources-E8LUak/sgn_ests; matching gDNA +strand ... ... found all matches, elapsed seconds = 3 ... matches indexed, elapsed seconds = 3 HitsTableSize = 0 EST library file: /tmp/cxgn-bacpublish-resources-E8LUak/sgn_ests; matching gDNA -strand ... ... found all matches, elapsed seconds = 4 ... matches indexed, elapsed seconds = 4 HitsTableSize = 0 No significant EST matches were found. ... finished at: Mon Aug 28 22:10:38 2006 ________________________________________________________________________________ Sequence 8: C06HBa0158P14.1-8, from 1 to 17857, both strands analyzed. ... started at: Mon Aug 28 22:10:38 2006 EST library file: /tmp/cxgn-bacpublish-resources-E8LUak/sgn_ests; matching gDNA +strand ... ... found all matches, elapsed seconds = 4 ... matches indexed, elapsed seconds = 4 HitsTableSize = 17 EST library file: /tmp/cxgn-bacpublish-resources-E8LUak/sgn_ests; matching gDNA -strand ... ... found all matches, elapsed seconds = 4 ... matches indexed, elapsed seconds = 4 HitsTableSize = 2 ******************************************************************************** EST sequence 19 -strand 343 n (File: SGN-E296857-) 1 AGTGGGAGAC CACCGCGAAT GGCGGTGGCG CCACCGGTCA ACACGCGAGA CTCCATTGGC 61 AGTGAGAGAG TAGAGAGAGA AAATAGTGAC TTGGGCATCA GAAATCTCAT TTGGTGGAAT 121 GCAAACTAGG AATTCCAGTT AGACCCTTTA GGCCTTTTTT CTTACTACTT GTTTAGATTT 181 GGTAGATTTA TAGGTAAAAA ATTGCATAAA TTGCTCTAAA GTTCTTAGAG CTAGGTCATT 241 TCTGATTGTA GCTTCTTATT CAGAAAGGAG CTTGAGGACA TAATACATGA TAAGATTGTT 301 GTTTCGATCA AAAAAAAAAA AAAAAAACTG AGACTAGTTC TCT Predicted gene structure (within gDNA segment 761 to 3447): Exon 1 2290 2517 ( 228 n); cDNA 84 310 ( 227 n); score: 0.982 PPA cDNA 311 328 MATCH C06HBa0158P14.1-8+ SGN-E296857- 0.982 228 0.665 C PGS_C06HBa0158P14.1-8+_SGN-E296857- (2290 2517) Alignment (genomic DNA sequence = upper lines): TACTGGATTG TGGCATCAGA AATCTCATTT GGTGGAATGC AAACTAGGAA TTCCAGTTAG 2349 || || ||| ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAGTGACTTG -GGCATCAGA AATCTCATTT GGTGGAATGC AAACTAGGAA TTCCAGTTAG 142 ACCCTTTAGG CCTTTTTTCT TACTACTTGT TTAGATTTGG TAGATTTATA GGTAAAAAAT 2409 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACCCTTTAGG CCTTTTTTCT TACTACTTGT TTAGATTTGG TAGATTTATA GGTAAAAAAT 202 TGCATAAATT GCTCTAAAGT TCTTAGAGCT AGGTCATTTC TGATTGTAGC TTCTTATTCA 2469 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCATAAATT GCTCTAAAGT TCTTAGAGCT AGGTCATTTC TGATTGTAGC TTCTTATTCA 262 GAAAGGAGCT TGAGGACATA ATACATGATA AGATTGTTGT TTCGATCA 2517 |||||||||| |||||||||| |||||||||| |||||||||| |||||||| GAAAGGAGCT TGAGGACATA ATACATGATA AGATTGTTGT TTCGATCA 310 hqPGS_C06HBa0158P14.1-8+_SGN-E296857- (2290 2517) ******************************************************************************** EST sequence 2 +strand 637 n (File: SGN-E284451+) 1 AGATATACAA TTTCATATAT TTTTTTTAAA AAAAAAAACA CAATTTTCAT GCAAAATATA 61 GTAACTAAAT AGAAAGAATT AGCAATTCAT CTGCTATTTC TTTCAAAAAA AATAAAATAA 121 AAATTCATAT CCTATGGCTC CAACTCTTAC TTCAAATTCA TTTCTCCTTT CAACTACACC 181 TCATCCAAGA TTATCATTCA AAAATCCAAG ATTCATTGTT TCTGCTAAAA AATCTGGACA 241 AAATCAAGAA ACTACAACCA ATTCTGGCAA CCCCTTCAAC TTTGATTTCG GTAAGTTACC 301 TGATGTGACG TCTTTGATAC CTGCTAGCAC GAACACATCT TCTGGATTGT CTTTTGGAAG 361 GCAAAGGGCA AAGGATCCTG GAACGGTGTT TGTTGCTGGT GCAACTGGGC AAGCTGGTAT 421 CCGCATTGCA CAGTTGCTGT TGCGTGAAGG TTATAGTGTC AGAGCTGGAG TTTCTGACCT 481 TGGTGCTGCA CAAGAGCTAG CTCGTCTAGC CGTTAGCTAC AAGGTAATCT CTAACGATGA 541 GTCAAAACGT CTGAATGCAG TTGCATCATC ATTTCAAGAT GCAGAATCGA TTGCAAAGGC 601 AATCGGAAAT GCTAACAAAG TTGTGGTTAC TATTAGT Predicted gene structure (within gDNA segment 12241 to 15195): Exon 1 12841 13130 ( 290 n); cDNA 1 290 ( 290 n); score: 1.000 Intron 1 13131 13928 ( 798 n); Pd: 0.997 (s: 1.00), Pa: 0.996 (s: 1.00) Exon 2 13929 14161 ( 233 n); cDNA 291 523 ( 233 n); score: 1.000 Intron 2 14162 14471 ( 310 n); Pd: 0.999 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 3 14472 14585 ( 114 n); cDNA 524 637 ( 114 n); score: 1.000 MATCH C06HBa0158P14.1-8+ SGN-E284451+ 1.000 637 1.000 C PGS_C06HBa0158P14.1-8+_SGN-E284451+ (12841 13130,13929 14161,14472 14585) Alignment (genomic DNA sequence = upper lines): AGATATACAA TTTCATATAT TTTTTTTAAA AAAAAAAACA CAATTTTCAT GCAAAATATA 12900 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGATATACAA TTTCATATAT TTTTTTTAAA AAAAAAAACA CAATTTTCAT GCAAAATATA 60 GTAACTAAAT AGAAAGAATT AGCAATTCAT CTGCTATTTC TTTCAAAAAA AATAAAATAA 12960 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTAACTAAAT AGAAAGAATT AGCAATTCAT CTGCTATTTC TTTCAAAAAA AATAAAATAA 120 AAATTCATAT CCTATGGCTC CAACTCTTAC TTCAAATTCA TTTCTCCTTT CAACTACACC 13020 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAATTCATAT CCTATGGCTC CAACTCTTAC TTCAAATTCA TTTCTCCTTT CAACTACACC 180 TCATCCAAGA TTATCATTCA AAAATCCAAG ATTCATTGTT TCTGCTAAAA AATCTGGACA 13080 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCATCCAAGA TTATCATTCA AAAATCCAAG ATTCATTGTT TCTGCTAAAA AATCTGGACA 240 AAATCAAGAA ACTACAACCA ATTCTGGCAA CCCCTTCAAC TTTGATTTCG GTAATGTTCG 13140 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAATCAAGAA ACTACAACCA ATTCTGGCAA CCCCTTCAAC TTTGATTTCG .......... 290 GAACTGTGTG ATCATTTCAT CTAATATTTG ATCTGTTTTA TTTTTGGATA ATGTTGAACT 13200 .......... .......... .......... .......... .......... .......... 290 GTGTGACCAT TTCATTTCAA TTTACTTAAT TATGTATGTG GAGTTGTTTT TCTTATAATG 13260 .......... .......... .......... .......... .......... .......... 290 TGTGATAGTG AGTCTTGAAT GCAAGCCTTG CTAGGCGTCT GCTTGTTCTA ATACCATGTT 13320 .......... .......... .......... .......... .......... .......... 290 GAATTGTGCG ATCATTTCAT CTGACTTTTT ACTTAATTAT ATTCGTAGAA GTTTTTTTTT 13380 .......... .......... .......... .......... .......... .......... 290 TTAATTTGAT AATGGGTGAC GGTAAGACTT GGACGCAAGA CTTATGTTTG CTCTAATGCC 13440 .......... .......... .......... .......... .......... .......... 290 ATATTTGAGA CTTGAACACT AGAAGTAAGT TTGTTTGTTC TGATACCATG TTTAATTATG 13500 .......... .......... .......... .......... .......... .......... 290 TATGCGTCTC ATCTAAATTG ACTTTGTTAT TTTCGTATAG TTTCTGTTTT ATTATGGGTG 13560 .......... .......... .......... .......... .......... .......... 290 ACAGTGAGAC TTGAAAGCAG AACTTGTGTT TTTTCTATTG TCAAGTTGAA AATTGAATGT 13620 .......... .......... .......... .......... .......... .......... 290 GAAACTACGT CTTAGGCCTG ACTCACACTC CAAAAAATAG CTCTAATGGA AAGGATTGTC 13680 .......... .......... .......... .......... .......... .......... 290 CAAACCTTAT AAGGAGTCCA TCCATCTCAT TAACCACCGA TGTGGTCTTT TCTCCGTCTT 13740 .......... .......... .......... .......... .......... .......... 290 TAACATTGAA CTCTAGGCGT TTGCTTGCTC TAATACTATA TTGAATTGTG CGGTCATTTC 13800 .......... .......... .......... .......... .......... .......... 290 ATTTGAATTT ACTTAATTAT GTCTGTAAAA GTGTGTTCTG GTGTTTATTG AATTGTGTTA 13860 .......... .......... .......... .......... .......... .......... 290 GTGTATTATC TGAAAGATTA GAAGACGAAC ACACTTTTAG TTACTCAATT ACACTGTGTA 13920 .......... .......... .......... .......... .......... .......... 290 TTCAACAGGT AAGTTACCTG ATGTGACGTC TTTGATACCT GCTAGCACGA ACACATCTTC 13980 || |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ........GT AAGTTACCTG ATGTGACGTC TTTGATACCT GCTAGCACGA ACACATCTTC 342 TGGATTGTCT TTTGGAAGGC AAAGGGCAAA GGATCCTGGA ACGGTGTTTG TTGCTGGTGC 14040 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGATTGTCT TTTGGAAGGC AAAGGGCAAA GGATCCTGGA ACGGTGTTTG TTGCTGGTGC 402 AACTGGGCAA GCTGGTATCC GCATTGCACA GTTGCTGTTG CGTGAAGGTT ATAGTGTCAG 14100 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACTGGGCAA GCTGGTATCC GCATTGCACA GTTGCTGTTG CGTGAAGGTT ATAGTGTCAG 462 AGCTGGAGTT TCTGACCTTG GTGCTGCACA AGAGCTAGCT CGTCTAGCCG TTAGCTACAA 14160 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCTGGAGTT TCTGACCTTG GTGCTGCACA AGAGCTAGCT CGTCTAGCCG TTAGCTACAA 522 GGTCAGTCTC TTTGTCCTTG CAAAATATGG AACTTGTTAG AGTATCCGAC ATTGGTTGTG 14220 | G......... .......... .......... .......... .......... .......... 523 GGAATGAACT ATTGTCATAT ATGGTTTTGT GCAATATTAA CTCTTGAGCC AACGTTTTGG 14280 .......... .......... .......... .......... .......... .......... 523 TTGAATTAGG TTCAAGGTCC ATTTTTTTCT ATCAGAGCCA TCTTTTCTTT GTTGTGTTTC 14340 .......... .......... .......... .......... .......... .......... 523 ACAATATTAA GCCTGGATGT TATATCGTCC ACGATCTAGA TGTCCAACTT CATGAGGGAG 14400 .......... .......... .......... .......... .......... .......... 523 TGTTAGAGCG TCTCACATTG GTTGAGGGAA TGGGTTGTTG TTTTCTGATT ATAAATGTTA 14460 .......... .......... .......... .......... .......... .......... 523 AATTATTGCA GGTAATCTCT AACGATGAGT CAAAACGTCT GAATGCAGTT GCATCATCAT 14520 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... .GTAATCTCT AACGATGAGT CAAAACGTCT GAATGCAGTT GCATCATCAT 572 TTCAAGATGC AGAATCGATT GCAAAGGCAA TCGGAAATGC TAACAAAGTT GTGGTTACTA 14580 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCAAGATGC AGAATCGATT GCAAAGGCAA TCGGAAATGC TAACAAAGTT GTGGTTACTA 632 TTAGT 14585 ||||| TTAGT 637 hqPGS_C06HBa0158P14.1-8+_SGN-E284451+ (12841 13130,13929 14161,14472 14585) ******************************************************************************** EST sequence 7 +strand 604 n (File: SGN-E348094+) 1 ACAATTTCAT ATATTTTTTT TAAAAAAAAA AAACAATTTT CATGCAAAAT ATAGTAACTA 61 AATAGAAAGA ATTAGCAATT CATCTGCTAT TTCTTTCAAA AAAAATAAAA TAAAAATTCA 121 TATCCTATGG CTCCAACTCT TACTTCAAAT TCATTTCTCC TTTCAACTAC ACCTCATCCA 181 AGATTATCAT TCAAAAATCC AAGATTCATT GTTTCTGCTA AAAAATCTGG ACAAAATCAA 241 GAAACTACAA CCAATTCTGG CAACCCCTTC AACTTTGATT TCGGTAAGTT ACCTGATGTG 301 ACGTCTTTGA TACCTGCTAG CACGAACACA TCTTCTGGAT TGTCTTTTGG AAGGCAAAGG 361 GCAAAGGATC CTGGAACGGT GTTTGTTGCT GGTGCAACTG GGCAAGCTGG TATCCGCATT 421 GCACAGTTGC TGTTGCGTGA AGGTTATAGT GTCAGAGCTG GAGTTTCTGA CCTTGGNTGC 481 TGCACAAGAG CTAGCTCGTC TAGCCGTTAG CTACAAGGTA ATCTCTAACG ATGAGTAAAA 541 ACGTCTGAAT GCAGTTGCAT CATCATTTCA AGATGCAGAA TCGATTGCAA AGGCAATCGG 601 AAAT Predicted gene structure (within gDNA segment 12247 to 15168): Exon 1 12847 13130 ( 284 n); cDNA 1 283 ( 283 n); score: 0.996 Intron 1 13131 13928 ( 798 n); Pd: 0.997 (s: 1.00), Pa: 0.996 (s: 1.00) Exon 2 13929 14161 ( 233 n); cDNA 284 517 ( 234 n); score: 0.989 Intron 2 14162 14471 ( 310 n); Pd: 0.999 (s: 0.95), Pa: 0.998 (s: 0.98) Exon 3 14472 14558 ( 87 n); cDNA 518 604 ( 87 n); score: 0.989 MATCH C06HBa0158P14.1-8+ SGN-E348094+ 0.993 604 1.000 C PGS_C06HBa0158P14.1-8+_SGN-E348094+ (12847 13130,13929 14161,14472 14558) Alignment (genomic DNA sequence = upper lines): ACAATTTCAT ATATTTTTTT TAAAAAAAAA AACACAATTT TCATGCAAAA TATAGTAACT 12906 |||||||||| |||||||||| |||||||||| || ||||||| |||||||||| |||||||||| ACAATTTCAT ATATTTTTTT TAAAAAAAAA AA-ACAATTT TCATGCAAAA TATAGTAACT 59 AAATAGAAAG AATTAGCAAT TCATCTGCTA TTTCTTTCAA AAAAAATAAA ATAAAAATTC 12966 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAATAGAAAG AATTAGCAAT TCATCTGCTA TTTCTTTCAA AAAAAATAAA ATAAAAATTC 119 ATATCCTATG GCTCCAACTC TTACTTCAAA TTCATTTCTC CTTTCAACTA CACCTCATCC 13026 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATATCCTATG GCTCCAACTC TTACTTCAAA TTCATTTCTC CTTTCAACTA CACCTCATCC 179 AAGATTATCA TTCAAAAATC CAAGATTCAT TGTTTCTGCT AAAAAATCTG GACAAAATCA 13086 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGATTATCA TTCAAAAATC CAAGATTCAT TGTTTCTGCT AAAAAATCTG GACAAAATCA 239 AGAAACTACA ACCAATTCTG GCAACCCCTT CAACTTTGAT TTCGGTAATG TTCGGAACTG 13146 |||||||||| |||||||||| |||||||||| |||||||||| |||| AGAAACTACA ACCAATTCTG GCAACCCCTT CAACTTTGAT TTCG...... .......... 283 TGTGATCATT TCATCTAATA TTTGATCTGT TTTATTTTTG GATAATGTTG AACTGTGTGA 13206 .......... .......... .......... .......... .......... .......... 283 CCATTTCATT TCAATTTACT TAATTATGTA TGTGGAGTTG TTTTTCTTAT AATGTGTGAT 13266 .......... .......... .......... .......... .......... .......... 283 AGTGAGTCTT GAATGCAAGC CTTGCTAGGC GTCTGCTTGT TCTAATACCA TGTTGAATTG 13326 .......... .......... .......... .......... .......... .......... 283 TGCGATCATT TCATCTGACT TTTTACTTAA TTATATTCGT AGAAGTTTTT TTTTTTAATT 13386 .......... .......... .......... .......... .......... .......... 283 TGATAATGGG TGACGGTAAG ACTTGGACGC AAGACTTATG TTTGCTCTAA TGCCATATTT 13446 .......... .......... .......... .......... .......... .......... 283 GAGACTTGAA CACTAGAAGT AAGTTTGTTT GTTCTGATAC CATGTTTAAT TATGTATGCG 13506 .......... .......... .......... .......... .......... .......... 283 TCTCATCTAA ATTGACTTTG TTATTTTCGT ATAGTTTCTG TTTTATTATG GGTGACAGTG 13566 .......... .......... .......... .......... .......... .......... 283 AGACTTGAAA GCAGAACTTG TGTTTTTTCT ATTGTCAAGT TGAAAATTGA ATGTGAAACT 13626 .......... .......... .......... .......... .......... .......... 283 ACGTCTTAGG CCTGACTCAC ACTCCAAAAA ATAGCTCTAA TGGAAAGGAT TGTCCAAACC 13686 .......... .......... .......... .......... .......... .......... 283 TTATAAGGAG TCCATCCATC TCATTAACCA CCGATGTGGT CTTTTCTCCG TCTTTAACAT 13746 .......... .......... .......... .......... .......... .......... 283 TGAACTCTAG GCGTTTGCTT GCTCTAATAC TATATTGAAT TGTGCGGTCA TTTCATTTGA 13806 .......... .......... .......... .......... .......... .......... 283 ATTTACTTAA TTATGTCTGT AAAAGTGTGT TCTGGTGTTT ATTGAATTGT GTTAGTGTAT 13866 .......... .......... .......... .......... .......... .......... 283 TATCTGAAAG ATTAGAAGAC GAACACACTT TTAGTTACTC AATTACACTG TGTATTCAAC 13926 .......... .......... .......... .......... .......... .......... 283 AGGTAAGTTA CCTGATGTGA CGTCTTTGAT ACCTGCTAGC ACGAACACAT CTTCTGGATT 13986 |||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ..GTAAGTTA CCTGATGTGA CGTCTTTGAT ACCTGCTAGC ACGAACACAT CTTCTGGATT 341 GTCTTTTGGA AGGCAAAGGG CAAAGGATCC TGGAACGGTG TTTGTTGCTG GTGCAACTGG 14046 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTCTTTTGGA AGGCAAAGGG CAAAGGATCC TGGAACGGTG TTTGTTGCTG GTGCAACTGG 401 GCAAGCTGGT ATCCGCATTG CACAGTTGCT GTTGCGTGAA GGTTATAGTG TCAGAGCTGG 14106 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCAAGCTGGT ATCCGCATTG CACAGTTGCT GTTGCGTGAA GGTTATAGTG TCAGAGCTGG 461 AGTTTCTGAC CTTGG-TGCT GCACAAGAGC TAGCTCGTCT AGCCGTTAGC TACAAGGTCA 14165 |||||||||| ||||| |||| |||||||||| |||||||||| |||||||||| |||||| AGTTTCTGAC CTTGGNTGCT GCACAAGAGC TAGCTCGTCT AGCCGTTAGC TACAAG.... 517 GTCTCTTTGT CCTTGCAAAA TATGGAACTT GTTAGAGTAT CCGACATTGG TTGTGGGAAT 14225 .......... .......... .......... .......... .......... .......... 517 GAACTATTGT CATATATGGT TTTGTGCAAT ATTAACTCTT GAGCCAACGT TTTGGTTGAA 14285 .......... .......... .......... .......... .......... .......... 517 TTAGGTTCAA GGTCCATTTT TTTCTATCAG AGCCATCTTT TCTTTGTTGT GTTTCACAAT 14345 .......... .......... .......... .......... .......... .......... 517 ATTAAGCCTG GATGTTATAT CGTCCACGAT CTAGATGTCC AACTTCATGA GGGAGTGTTA 14405 .......... .......... .......... .......... .......... .......... 517 GAGCGTCTCA CATTGGTTGA GGGAATGGGT TGTTGTTTTC TGATTATAAA TGTTAAATTA 14465 .......... .......... .......... .......... .......... .......... 517 TTGCAGGTAA TCTCTAACGA TGAGTCAAAA CGTCTGAATG CAGTTGCATC ATCATTTCAA 14525 |||| |||||||||| ||||| |||| |||||||||| |||||||||| |||||||||| ......GTAA TCTCTAACGA TGAGTAAAAA CGTCTGAATG CAGTTGCATC ATCATTTCAA 571 GATGCAGAAT CGATTGCAAA GGCAATCGGA AAT 14558 |||||||||| |||||||||| |||||||||| ||| GATGCAGAAT CGATTGCAAA GGCAATCGGA AAT 604 hqPGS_C06HBa0158P14.1-8+_SGN-E348094+ (12847 13130,13929 14161,14472 14558) ******************************************************************************** EST sequence 12 +strand 359 n (File: SGN-E244213+) 1 AAATATAGTA ACTAAATAGA AAGAATTAGC AATTCATCTG CTATTTCTTT CAAAAAAAAT 61 AAAATAAAAA TTCATATCCT ATGGCTCCAA CTCTTACTTC AAATTCATTT CTCCTTTCAA 121 CTACACCTCA TCCAAGATTA TCATTCAAAA ATCCAAGATT CATTGTTTCT GCTAAAAAAT 181 CTGGACAAAA TCAAGAAACT ACAACCAATT CTGGCAACCC CTTCAACTTT GATTTCGGTA 241 AGTTACCTGA TGTGACGTCT TTGATACCTG CTAGCACGAA CACATCTTCT GGATTGTCTT 301 TTGGAAGGCA AAGGGCAAAG GATCCTGGAA CGGTGTTTGT TGCTGGTGCA ACTGGGCAA Predicted gene structure (within gDNA segment 12294 to 14660): Exon 1 12894 13130 ( 237 n); cDNA 1 237 ( 237 n); score: 1.000 Intron 1 13131 13928 ( 798 n); Pd: 0.997 (s: 1.00), Pa: 0.996 (s: 1.00) Exon 2 13929 14050 ( 122 n); cDNA 238 359 ( 122 n); score: 1.000 MATCH C06HBa0158P14.1-8+ SGN-E244213+ 1.000 359 1.000 C PGS_C06HBa0158P14.1-8+_SGN-E244213+ (12894 13130,13929 14050) Alignment (genomic DNA sequence = upper lines): AAATATAGTA ACTAAATAGA AAGAATTAGC AATTCATCTG CTATTTCTTT CAAAAAAAAT 12953 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAATATAGTA ACTAAATAGA AAGAATTAGC AATTCATCTG CTATTTCTTT CAAAAAAAAT 60 AAAATAAAAA TTCATATCCT ATGGCTCCAA CTCTTACTTC AAATTCATTT CTCCTTTCAA 13013 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAATAAAAA TTCATATCCT ATGGCTCCAA CTCTTACTTC AAATTCATTT CTCCTTTCAA 120 CTACACCTCA TCCAAGATTA TCATTCAAAA ATCCAAGATT CATTGTTTCT GCTAAAAAAT 13073 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTACACCTCA TCCAAGATTA TCATTCAAAA ATCCAAGATT CATTGTTTCT GCTAAAAAAT 180 CTGGACAAAA TCAAGAAACT ACAACCAATT CTGGCAACCC CTTCAACTTT GATTTCGGTA 13133 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||| CTGGACAAAA TCAAGAAACT ACAACCAATT CTGGCAACCC CTTCAACTTT GATTTCG... 237 ATGTTCGGAA CTGTGTGATC ATTTCATCTA ATATTTGATC TGTTTTATTT TTGGATAATG 13193 .......... .......... .......... .......... .......... .......... 237 TTGAACTGTG TGACCATTTC ATTTCAATTT ACTTAATTAT GTATGTGGAG TTGTTTTTCT 13253 .......... .......... .......... .......... .......... .......... 237 TATAATGTGT GATAGTGAGT CTTGAATGCA AGCCTTGCTA GGCGTCTGCT TGTTCTAATA 13313 .......... .......... .......... .......... .......... .......... 237 CCATGTTGAA TTGTGCGATC ATTTCATCTG ACTTTTTACT TAATTATATT CGTAGAAGTT 13373 .......... .......... .......... .......... .......... .......... 237 TTTTTTTTTA ATTTGATAAT GGGTGACGGT AAGACTTGGA CGCAAGACTT ATGTTTGCTC 13433 .......... .......... .......... .......... .......... .......... 237 TAATGCCATA TTTGAGACTT GAACACTAGA AGTAAGTTTG TTTGTTCTGA TACCATGTTT 13493 .......... .......... .......... .......... .......... .......... 237 AATTATGTAT GCGTCTCATC TAAATTGACT TTGTTATTTT CGTATAGTTT CTGTTTTATT 13553 .......... .......... .......... .......... .......... .......... 237 ATGGGTGACA GTGAGACTTG AAAGCAGAAC TTGTGTTTTT TCTATTGTCA AGTTGAAAAT 13613 .......... .......... .......... .......... .......... .......... 237 TGAATGTGAA ACTACGTCTT AGGCCTGACT CACACTCCAA AAAATAGCTC TAATGGAAAG 13673 .......... .......... .......... .......... .......... .......... 237 GATTGTCCAA ACCTTATAAG GAGTCCATCC ATCTCATTAA CCACCGATGT GGTCTTTTCT 13733 .......... .......... .......... .......... .......... .......... 237 CCGTCTTTAA CATTGAACTC TAGGCGTTTG CTTGCTCTAA TACTATATTG AATTGTGCGG 13793 .......... .......... .......... .......... .......... .......... 237 TCATTTCATT TGAATTTACT TAATTATGTC TGTAAAAGTG TGTTCTGGTG TTTATTGAAT 13853 .......... .......... .......... .......... .......... .......... 237 TGTGTTAGTG TATTATCTGA AAGATTAGAA GACGAACACA CTTTTAGTTA CTCAATTACA 13913 .......... .......... .......... .......... .......... .......... 237 CTGTGTATTC AACAGGTAAG TTACCTGATG TGACGTCTTT GATACCTGCT AGCACGAACA 13973 ||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... .....GTAAG TTACCTGATG TGACGTCTTT GATACCTGCT AGCACGAACA 282 CATCTTCTGG ATTGTCTTTT GGAAGGCAAA GGGCAAAGGA TCCTGGAACG GTGTTTGTTG 14033 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATCTTCTGG ATTGTCTTTT GGAAGGCAAA GGGCAAAGGA TCCTGGAACG GTGTTTGTTG 342 CTGGTGCAAC TGGGCAA 14050 |||||||||| ||||||| CTGGTGCAAC TGGGCAA 359 hqPGS_C06HBa0158P14.1-8+_SGN-E244213+ (12894 13130,13929 14050) ******************************************************************************** EST sequence 11 +strand 530 n (File: SGN-E288958+) 1 TTCATCTGCT ATTTCTTTCA AAAAAAAAAT AAAATAAAAA TTCATATCCT ATGGCTCCAA 61 CTCTTACTTC AAATTCATTT CTCCTTTCAA CTACACCTCA TCCAAGATTA TCATTCAAAA 121 ATCCAAGATT CATTGTTTCT GCTAAAAAAT CTGGACAAAA TCAAGAAACT ACAACCAATT 181 CTGGCAACCC CTTCAACTTT GATTTCGGTA AGTTACCTGA TGTGACGTCT TTGATACCTG 241 CTAGCACGAA CACATCTTCT GGATTGTCTT TTGGAAGGCA AAGGGCAAAG GATCCTGGAA 301 CGGTGTTTGT TGCTGGTGCA ACTGGGCAAG CTGGTATCCG CATTGCACAG TTGCTGTTGC 361 GTGAAGGTTA TAGTGTCAGA GCTGGAGTTT CTGACCTTGG TGCTGCACAA GAGCTAGCTC 421 GTCTAGCCGT TAGCTACAAG GTAATCTCTA ACGATGAGTC AAAACGTCTG AATGCAGTTG 481 CATCATCATT TCAAGATGCA GAATCGATTG CAAAGGCAAT CGGAAATGCT Predicted gene structure (within gDNA segment 12326 to 15171): Exon 1 12926 13130 ( 205 n); cDNA 1 207 ( 207 n); score: 0.976 Intron 1 13131 13928 ( 798 n); Pd: 0.997 (s: 1.00), Pa: 0.996 (s: 1.00) Exon 2 13929 14161 ( 233 n); cDNA 208 440 ( 233 n); score: 1.000 Intron 2 14162 14471 ( 310 n); Pd: 0.999 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 3 14472 14561 ( 90 n); cDNA 441 530 ( 90 n); score: 1.000 MATCH C06HBa0158P14.1-8+ SGN-E288958+ 0.991 528 0.996 C PGS_C06HBa0158P14.1-8+_SGN-E288958+ (12926 13130,13929 14161,14472 14561) Alignment (genomic DNA sequence = upper lines): TTCATCTGCT ATTTCTTTC- -AAAAAAAAT AAAATAAAAA TTCATATCCT ATGGCTCCAA 12983 |||||||||| ||||||||| ||||||||| |||||||||| |||||||||| |||||||||| TTCATCTGCT ATTTCTTTCA AAAAAAAAAT AAAATAAAAA TTCATATCCT ATGGCTCCAA 60 CTCTTACTTC AAATTCATTT CTCCTTTCAA CTACACCTCA TCCAAGATTA TCATTCAAAA 13043 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCTTACTTC AAATTCATTT CTCCTTTCAA CTACACCTCA TCCAAGATTA TCATTCAAAA 120 ATCCAAGATT CATTGTTTCT GCTAAAAAAT CTGGACAAAA TCAAGAAACT ACAACCAATT 13103 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCCAAGATT CATTGTTTCT GCTAAAAAAT CTGGACAAAA TCAAGAAACT ACAACCAATT 180 CTGGCAACCC CTTCAACTTT GATTTCGGTA ATGTTCGGAA CTGTGTGATC ATTTCATCTA 13163 |||||||||| |||||||||| ||||||| CTGGCAACCC CTTCAACTTT GATTTCG... .......... .......... .......... 207 ATATTTGATC TGTTTTATTT TTGGATAATG TTGAACTGTG TGACCATTTC ATTTCAATTT 13223 .......... .......... .......... .......... .......... .......... 207 ACTTAATTAT GTATGTGGAG TTGTTTTTCT TATAATGTGT GATAGTGAGT CTTGAATGCA 13283 .......... .......... .......... .......... .......... .......... 207 AGCCTTGCTA GGCGTCTGCT TGTTCTAATA CCATGTTGAA TTGTGCGATC ATTTCATCTG 13343 .......... .......... .......... .......... .......... .......... 207 ACTTTTTACT TAATTATATT CGTAGAAGTT TTTTTTTTTA ATTTGATAAT GGGTGACGGT 13403 .......... .......... .......... .......... .......... .......... 207 AAGACTTGGA CGCAAGACTT ATGTTTGCTC TAATGCCATA TTTGAGACTT GAACACTAGA 13463 .......... .......... .......... .......... .......... .......... 207 AGTAAGTTTG TTTGTTCTGA TACCATGTTT AATTATGTAT GCGTCTCATC TAAATTGACT 13523 .......... .......... .......... .......... .......... .......... 207 TTGTTATTTT CGTATAGTTT CTGTTTTATT ATGGGTGACA GTGAGACTTG AAAGCAGAAC 13583 .......... .......... .......... .......... .......... .......... 207 TTGTGTTTTT TCTATTGTCA AGTTGAAAAT TGAATGTGAA ACTACGTCTT AGGCCTGACT 13643 .......... .......... .......... .......... .......... .......... 207 CACACTCCAA AAAATAGCTC TAATGGAAAG GATTGTCCAA ACCTTATAAG GAGTCCATCC 13703 .......... .......... .......... .......... .......... .......... 207 ATCTCATTAA CCACCGATGT GGTCTTTTCT CCGTCTTTAA CATTGAACTC TAGGCGTTTG 13763 .......... .......... .......... .......... .......... .......... 207 CTTGCTCTAA TACTATATTG AATTGTGCGG TCATTTCATT TGAATTTACT TAATTATGTC 13823 .......... .......... .......... .......... .......... .......... 207 TGTAAAAGTG TGTTCTGGTG TTTATTGAAT TGTGTTAGTG TATTATCTGA AAGATTAGAA 13883 .......... .......... .......... .......... .......... .......... 207 GACGAACACA CTTTTAGTTA CTCAATTACA CTGTGTATTC AACAGGTAAG TTACCTGATG 13943 ||||| |||||||||| .......... .......... .......... .......... .....GTAAG TTACCTGATG 222 TGACGTCTTT GATACCTGCT AGCACGAACA CATCTTCTGG ATTGTCTTTT GGAAGGCAAA 14003 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGACGTCTTT GATACCTGCT AGCACGAACA CATCTTCTGG ATTGTCTTTT GGAAGGCAAA 282 GGGCAAAGGA TCCTGGAACG GTGTTTGTTG CTGGTGCAAC TGGGCAAGCT GGTATCCGCA 14063 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGGCAAAGGA TCCTGGAACG GTGTTTGTTG CTGGTGCAAC TGGGCAAGCT GGTATCCGCA 342 TTGCACAGTT GCTGTTGCGT GAAGGTTATA GTGTCAGAGC TGGAGTTTCT GACCTTGGTG 14123 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGCACAGTT GCTGTTGCGT GAAGGTTATA GTGTCAGAGC TGGAGTTTCT GACCTTGGTG 402 CTGCACAAGA GCTAGCTCGT CTAGCCGTTA GCTACAAGGT CAGTCTCTTT GTCCTTGCAA 14183 |||||||||| |||||||||| |||||||||| |||||||| CTGCACAAGA GCTAGCTCGT CTAGCCGTTA GCTACAAG.. .......... .......... 440 AATATGGAAC TTGTTAGAGT ATCCGACATT GGTTGTGGGA ATGAACTATT GTCATATATG 14243 .......... .......... .......... .......... .......... .......... 440 GTTTTGTGCA ATATTAACTC TTGAGCCAAC GTTTTGGTTG AATTAGGTTC AAGGTCCATT 14303 .......... .......... .......... .......... .......... .......... 440 TTTTTCTATC AGAGCCATCT TTTCTTTGTT GTGTTTCACA ATATTAAGCC TGGATGTTAT 14363 .......... .......... .......... .......... .......... .......... 440 ATCGTCCACG ATCTAGATGT CCAACTTCAT GAGGGAGTGT TAGAGCGTCT CACATTGGTT 14423 .......... .......... .......... .......... .......... .......... 440 GAGGGAATGG GTTGTTGTTT TCTGATTATA AATGTTAAAT TATTGCAGGT AATCTCTAAC 14483 || |||||||||| .......... .......... .......... .......... ........GT AATCTCTAAC 452 GATGAGTCAA AACGTCTGAA TGCAGTTGCA TCATCATTTC AAGATGCAGA ATCGATTGCA 14543 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATGAGTCAA AACGTCTGAA TGCAGTTGCA TCATCATTTC AAGATGCAGA ATCGATTGCA 512 AAGGCAATCG GAAATGCT 14561 |||||||||| |||||||| AAGGCAATCG GAAATGCT 530 hqPGS_C06HBa0158P14.1-8+_SGN-E288958+ (12926 13130,13929 14161,14472 14561) ******************************************************************************** EST sequence 10 +strand 597 n (File: SGN-E310470+) 1 TTACTTCAAA TTCATTTCTC CTTTCAACTA CACCTCATCC AAGATTATCA TTCAAAAATC 61 CAAGATTCAT TGTTTCTGCT AAAAAATCTG GACAAAATCA AGAAACTACA ACCAATTCTG 121 GCAACCCCTT CAACTTTGAT TTCGGTAAGT TACCTGATGT GACGTCTTTG ATACCTGCTA 181 GCACGAACAC ATCTTCTGGA TTGTCTTTTG GAAGGCAAAG GGCAAAGGAT CCTGGAACGG 241 TGTTTGTTGC TGGTGCAACT GGGCAAGCTG GTATCCGCAT TGCACAGTTG CTGTTGCGTG 301 AAGGTTATAG TGTCAGAGCT GGAGTTTCTG ACCTTGGTGC TGCACAAGAG CTAGCTCGTC 361 TAGCCGTTAG CTACAAGGTA ATCTCTAACG ATGAGTCAAA ACGTCTGAAT GCAGTTGCAT 421 CATCATTTCA AGATGCAGAA TCGATTGCAA AGGCAATCGG AAATGCTAAC AAAGTTGTGG 481 TTACTATTAG TAAGGGAGAG GACGGTCCTG CGACTGAAGT CACCACAACA GATGCTGTAC 541 AAGTTATAGA AGCAGCACAA TTAGCTGGCG TTGGACATGT GGCCATAGTC TATGATG Predicted gene structure (within gDNA segment 12387 to 15301): Exon 1 12987 13130 ( 144 n); cDNA 1 144 ( 144 n); score: 1.000 Intron 1 13131 13928 ( 798 n); Pd: 0.997 (s: 1.00), Pa: 0.996 (s: 1.00) Exon 2 13929 14161 ( 233 n); cDNA 145 377 ( 233 n); score: 1.000 Intron 2 14162 14471 ( 310 n); Pd: 0.999 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 3 14472 14691 ( 220 n); cDNA 378 597 ( 220 n); score: 1.000 MATCH C06HBa0158P14.1-8+ SGN-E310470+ 1.000 597 1.000 C PGS_C06HBa0158P14.1-8+_SGN-E310470+ (12987 13130,13929 14161,14472 14691) Alignment (genomic DNA sequence = upper lines): TTACTTCAAA TTCATTTCTC CTTTCAACTA CACCTCATCC AAGATTATCA TTCAAAAATC 13046 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTACTTCAAA TTCATTTCTC CTTTCAACTA CACCTCATCC AAGATTATCA TTCAAAAATC 60 CAAGATTCAT TGTTTCTGCT AAAAAATCTG GACAAAATCA AGAAACTACA ACCAATTCTG 13106 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAGATTCAT TGTTTCTGCT AAAAAATCTG GACAAAATCA AGAAACTACA ACCAATTCTG 120 GCAACCCCTT CAACTTTGAT TTCGGTAATG TTCGGAACTG TGTGATCATT TCATCTAATA 13166 |||||||||| |||||||||| |||| GCAACCCCTT CAACTTTGAT TTCG...... .......... .......... .......... 144 TTTGATCTGT TTTATTTTTG GATAATGTTG AACTGTGTGA CCATTTCATT TCAATTTACT 13226 .......... .......... .......... .......... .......... .......... 144 TAATTATGTA TGTGGAGTTG TTTTTCTTAT AATGTGTGAT AGTGAGTCTT GAATGCAAGC 13286 .......... .......... .......... .......... .......... .......... 144 CTTGCTAGGC GTCTGCTTGT TCTAATACCA TGTTGAATTG TGCGATCATT TCATCTGACT 13346 .......... .......... .......... .......... .......... .......... 144 TTTTACTTAA TTATATTCGT AGAAGTTTTT TTTTTTAATT TGATAATGGG TGACGGTAAG 13406 .......... .......... .......... .......... .......... .......... 144 ACTTGGACGC AAGACTTATG TTTGCTCTAA TGCCATATTT GAGACTTGAA CACTAGAAGT 13466 .......... .......... .......... .......... .......... .......... 144 AAGTTTGTTT GTTCTGATAC CATGTTTAAT TATGTATGCG TCTCATCTAA ATTGACTTTG 13526 .......... .......... .......... .......... .......... .......... 144 TTATTTTCGT ATAGTTTCTG TTTTATTATG GGTGACAGTG AGACTTGAAA GCAGAACTTG 13586 .......... .......... .......... .......... .......... .......... 144 TGTTTTTTCT ATTGTCAAGT TGAAAATTGA ATGTGAAACT ACGTCTTAGG CCTGACTCAC 13646 .......... .......... .......... .......... .......... .......... 144 ACTCCAAAAA ATAGCTCTAA TGGAAAGGAT TGTCCAAACC TTATAAGGAG TCCATCCATC 13706 .......... .......... .......... .......... .......... .......... 144 TCATTAACCA CCGATGTGGT CTTTTCTCCG TCTTTAACAT TGAACTCTAG GCGTTTGCTT 13766 .......... .......... .......... .......... .......... .......... 144 GCTCTAATAC TATATTGAAT TGTGCGGTCA TTTCATTTGA ATTTACTTAA TTATGTCTGT 13826 .......... .......... .......... .......... .......... .......... 144 AAAAGTGTGT TCTGGTGTTT ATTGAATTGT GTTAGTGTAT TATCTGAAAG ATTAGAAGAC 13886 .......... .......... .......... .......... .......... .......... 144 GAACACACTT TTAGTTACTC AATTACACTG TGTATTCAAC AGGTAAGTTA CCTGATGTGA 13946 |||||||| |||||||||| .......... .......... .......... .......... ..GTAAGTTA CCTGATGTGA 162 CGTCTTTGAT ACCTGCTAGC ACGAACACAT CTTCTGGATT GTCTTTTGGA AGGCAAAGGG 14006 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGTCTTTGAT ACCTGCTAGC ACGAACACAT CTTCTGGATT GTCTTTTGGA AGGCAAAGGG 222 CAAAGGATCC TGGAACGGTG TTTGTTGCTG GTGCAACTGG GCAAGCTGGT ATCCGCATTG 14066 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAAGGATCC TGGAACGGTG TTTGTTGCTG GTGCAACTGG GCAAGCTGGT ATCCGCATTG 282 CACAGTTGCT GTTGCGTGAA GGTTATAGTG TCAGAGCTGG AGTTTCTGAC CTTGGTGCTG 14126 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CACAGTTGCT GTTGCGTGAA GGTTATAGTG TCAGAGCTGG AGTTTCTGAC CTTGGTGCTG 342 CACAAGAGCT AGCTCGTCTA GCCGTTAGCT ACAAGGTCAG TCTCTTTGTC CTTGCAAAAT 14186 |||||||||| |||||||||| |||||||||| ||||| CACAAGAGCT AGCTCGTCTA GCCGTTAGCT ACAAG..... .......... .......... 377 ATGGAACTTG TTAGAGTATC CGACATTGGT TGTGGGAATG AACTATTGTC ATATATGGTT 14246 .......... .......... .......... .......... .......... .......... 377 TTGTGCAATA TTAACTCTTG AGCCAACGTT TTGGTTGAAT TAGGTTCAAG GTCCATTTTT 14306 .......... .......... .......... .......... .......... .......... 377 TTCTATCAGA GCCATCTTTT CTTTGTTGTG TTTCACAATA TTAAGCCTGG ATGTTATATC 14366 .......... .......... .......... .......... .......... .......... 377 GTCCACGATC TAGATGTCCA ACTTCATGAG GGAGTGTTAG AGCGTCTCAC ATTGGTTGAG 14426 .......... .......... .......... .......... .......... .......... 377 GGAATGGGTT GTTGTTTTCT GATTATAAAT GTTAAATTAT TGCAGGTAAT CTCTAACGAT 14486 ||||| |||||||||| .......... .......... .......... .......... .....GTAAT CTCTAACGAT 392 GAGTCAAAAC GTCTGAATGC AGTTGCATCA TCATTTCAAG ATGCAGAATC GATTGCAAAG 14546 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGTCAAAAC GTCTGAATGC AGTTGCATCA TCATTTCAAG ATGCAGAATC GATTGCAAAG 452 GCAATCGGAA ATGCTAACAA AGTTGTGGTT ACTATTAGTA AGGGAGAGGA CGGTCCTGCG 14606 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCAATCGGAA ATGCTAACAA AGTTGTGGTT ACTATTAGTA AGGGAGAGGA CGGTCCTGCG 512 ACTGAAGTCA CCACAACAGA TGCTGTACAA GTTATAGAAG CAGCACAATT AGCTGGCGTT 14666 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACTGAAGTCA CCACAACAGA TGCTGTACAA GTTATAGAAG CAGCACAATT AGCTGGCGTT 572 GGACATGTGG CCATAGTCTA TGATG 14691 |||||||||| |||||||||| ||||| GGACATGTGG CCATAGTCTA TGATG 597 hqPGS_C06HBa0158P14.1-8+_SGN-E310470+ (12987 13130,13929 14161,14472 14691) ******************************************************************************** EST sequence 17 +strand 485 n (File: SGN-E293193+) 1 TACTTCAAAT TCATTTCTCC TTTCAACTAC ACCTCATCCA AGATTATCAT TCAAAAATCC 61 AAGATTCATT GTTTCTGCTA AAAAATCTGG ACAAAATCAA GAAACTACAA CCAATTCTGG 121 CAACCCCTTC AACTTTGATT TCGGTAAGTT ACCTGATGTG ACGTCTTTGA TACCTGCTAG 181 CACGAACACA TCTTCTGGAT TGTCTTTTGG AAGGCAAAGG GCAAAGGATC CTGGAACGGT 241 GTTTGTTGCT GGTGCAACTG GGCAAGCTGG TATCCGCATT GCACAGTTGC TGTTGCGTGA 301 AGGTTATAGT GTCAGAGCTG GAGTTTCTGA CCTTGGTGCT GCACAAGAGC TAGCTCGTCT 361 AGCCGTTAGC TACAAGGTAA TCTCTAACGA TGAGTCAAAA CGTCTGAATG CAGTTGCATC 421 ATCATTTCAA GATGCAGAAT CGATTGCAAA GGCAATCGGA AATGCTAACA AAGTTGTGGT 481 TACTA Predicted gene structure (within gDNA segment 12388 to 15190): Exon 1 12988 13130 ( 143 n); cDNA 1 143 ( 143 n); score: 1.000 Intron 1 13131 13928 ( 798 n); Pd: 0.997 (s: 1.00), Pa: 0.996 (s: 1.00) Exon 2 13929 14161 ( 233 n); cDNA 144 376 ( 233 n); score: 1.000 Intron 2 14162 14471 ( 310 n); Pd: 0.999 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 3 14472 14580 ( 109 n); cDNA 377 485 ( 109 n); score: 1.000 MATCH C06HBa0158P14.1-8+ SGN-E293193+ 1.000 485 1.000 C PGS_C06HBa0158P14.1-8+_SGN-E293193+ (12988 13130,13929 14161,14472 14580) Alignment (genomic DNA sequence = upper lines): TACTTCAAAT TCATTTCTCC TTTCAACTAC ACCTCATCCA AGATTATCAT TCAAAAATCC 13047 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TACTTCAAAT TCATTTCTCC TTTCAACTAC ACCTCATCCA AGATTATCAT TCAAAAATCC 60 AAGATTCATT GTTTCTGCTA AAAAATCTGG ACAAAATCAA GAAACTACAA CCAATTCTGG 13107 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGATTCATT GTTTCTGCTA AAAAATCTGG ACAAAATCAA GAAACTACAA CCAATTCTGG 120 CAACCCCTTC AACTTTGATT TCGGTAATGT TCGGAACTGT GTGATCATTT CATCTAATAT 13167 |||||||||| |||||||||| ||| CAACCCCTTC AACTTTGATT TCG....... .......... .......... .......... 143 TTGATCTGTT TTATTTTTGG ATAATGTTGA ACTGTGTGAC CATTTCATTT CAATTTACTT 13227 .......... .......... .......... .......... .......... .......... 143 AATTATGTAT GTGGAGTTGT TTTTCTTATA ATGTGTGATA GTGAGTCTTG AATGCAAGCC 13287 .......... .......... .......... .......... .......... .......... 143 TTGCTAGGCG TCTGCTTGTT CTAATACCAT GTTGAATTGT GCGATCATTT CATCTGACTT 13347 .......... .......... .......... .......... .......... .......... 143 TTTACTTAAT TATATTCGTA GAAGTTTTTT TTTTTAATTT GATAATGGGT GACGGTAAGA 13407 .......... .......... .......... .......... .......... .......... 143 CTTGGACGCA AGACTTATGT TTGCTCTAAT GCCATATTTG AGACTTGAAC ACTAGAAGTA 13467 .......... .......... .......... .......... .......... .......... 143 AGTTTGTTTG TTCTGATACC ATGTTTAATT ATGTATGCGT CTCATCTAAA TTGACTTTGT 13527 .......... .......... .......... .......... .......... .......... 143 TATTTTCGTA TAGTTTCTGT TTTATTATGG GTGACAGTGA GACTTGAAAG CAGAACTTGT 13587 .......... .......... .......... .......... .......... .......... 143 GTTTTTTCTA TTGTCAAGTT GAAAATTGAA TGTGAAACTA CGTCTTAGGC CTGACTCACA 13647 .......... .......... .......... .......... .......... .......... 143 CTCCAAAAAA TAGCTCTAAT GGAAAGGATT GTCCAAACCT TATAAGGAGT CCATCCATCT 13707 .......... .......... .......... .......... .......... .......... 143 CATTAACCAC CGATGTGGTC TTTTCTCCGT CTTTAACATT GAACTCTAGG CGTTTGCTTG 13767 .......... .......... .......... .......... .......... .......... 143 CTCTAATACT ATATTGAATT GTGCGGTCAT TTCATTTGAA TTTACTTAAT TATGTCTGTA 13827 .......... .......... .......... .......... .......... .......... 143 AAAGTGTGTT CTGGTGTTTA TTGAATTGTG TTAGTGTATT ATCTGAAAGA TTAGAAGACG 13887 .......... .......... .......... .......... .......... .......... 143 AACACACTTT TAGTTACTCA ATTACACTGT GTATTCAACA GGTAAGTTAC CTGATGTGAC 13947 ||||||||| |||||||||| .......... .......... .......... .......... .GTAAGTTAC CTGATGTGAC 162 GTCTTTGATA CCTGCTAGCA CGAACACATC TTCTGGATTG TCTTTTGGAA GGCAAAGGGC 14007 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTCTTTGATA CCTGCTAGCA CGAACACATC TTCTGGATTG TCTTTTGGAA GGCAAAGGGC 222 AAAGGATCCT GGAACGGTGT TTGTTGCTGG TGCAACTGGG CAAGCTGGTA TCCGCATTGC 14067 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAGGATCCT GGAACGGTGT TTGTTGCTGG TGCAACTGGG CAAGCTGGTA TCCGCATTGC 282 ACAGTTGCTG TTGCGTGAAG GTTATAGTGT CAGAGCTGGA GTTTCTGACC TTGGTGCTGC 14127 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACAGTTGCTG TTGCGTGAAG GTTATAGTGT CAGAGCTGGA GTTTCTGACC TTGGTGCTGC 342 ACAAGAGCTA GCTCGTCTAG CCGTTAGCTA CAAGGTCAGT CTCTTTGTCC TTGCAAAATA 14187 |||||||||| |||||||||| |||||||||| |||| ACAAGAGCTA GCTCGTCTAG CCGTTAGCTA CAAG...... .......... .......... 376 TGGAACTTGT TAGAGTATCC GACATTGGTT GTGGGAATGA ACTATTGTCA TATATGGTTT 14247 .......... .......... .......... .......... .......... .......... 376 TGTGCAATAT TAACTCTTGA GCCAACGTTT TGGTTGAATT AGGTTCAAGG TCCATTTTTT 14307 .......... .......... .......... .......... .......... .......... 376 TCTATCAGAG CCATCTTTTC TTTGTTGTGT TTCACAATAT TAAGCCTGGA TGTTATATCG 14367 .......... .......... .......... .......... .......... .......... 376 TCCACGATCT AGATGTCCAA CTTCATGAGG GAGTGTTAGA GCGTCTCACA TTGGTTGAGG 14427 .......... .......... .......... .......... .......... .......... 376 GAATGGGTTG TTGTTTTCTG ATTATAAATG TTAAATTATT GCAGGTAATC TCTAACGATG 14487 |||||| |||||||||| .......... .......... .......... .......... ....GTAATC TCTAACGATG 392 AGTCAAAACG TCTGAATGCA GTTGCATCAT CATTTCAAGA TGCAGAATCG ATTGCAAAGG 14547 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTCAAAACG TCTGAATGCA GTTGCATCAT CATTTCAAGA TGCAGAATCG ATTGCAAAGG 452 CAATCGGAAA TGCTAACAAA GTTGTGGTTA CTA 14580 |||||||||| |||||||||| |||||||||| ||| CAATCGGAAA TGCTAACAAA GTTGTGGTTA CTA 485 hqPGS_C06HBa0158P14.1-8+_SGN-E293193+ (12988 13130,13929 14161,14472 14580) ******************************************************************************** EST sequence 4 +strand 423 n (File: SGN-E282426+) 1 TCAAATTCAA TATTCCTTTC AACTTCACCT CATCCAATTA TTATCATTCA AAAATCCAAG 61 ATTCATTGAT TCTGCTAAAA AATCTGGACA AAATCAAGAA ACTACAACCA ATTCTGGCAA 121 CCCCTTCAAC TTTGATTTCG GTAAGTTACC TGATGTGACG TCTTTGATAC CTGCTAGCAC 181 GAACACATCT TCTGGATTGA CTTTTGGAAG GCAAAGGGCA AAGGATCCTG GAACGGCGTT 241 TGTTGCTGGT GCAACTGGGC AAGCTGGTAT TCGCATTGCA CAGTTGCTGT TGCGTGAAGG 301 TTATAGTGTC AGAGCTGGAG TTTCTGACCT TGGTGCTGCA CAAGAGCTAG CTCGTCTAGC 361 CGTTAGCTAC AAGGTAATCT CTAACGATGA GTCAAAACGT CTGAATGCAG TTGCATCATC 421 ATT Predicted gene structure (within gDNA segment 12040 to 15131): Exon 1 12992 13130 ( 139 n); cDNA 1 140 ( 140 n); score: 0.939 Intron 1 13131 13928 ( 798 n); Pd: 0.997 (s: 1.00), Pa: 0.996 (s: 1.00) Exon 2 13929 14161 ( 233 n); cDNA 141 373 ( 233 n); score: 0.987 Intron 2 14162 14471 ( 310 n); Pd: 0.999 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 3 14472 14521 ( 50 n); cDNA 374 423 ( 50 n); score: 1.000 MATCH C06HBa0158P14.1-8+ SGN-E282426+ 0.973 422 0.998 C PGS_C06HBa0158P14.1-8+_SGN-E282426+ (12992 13130,13929 14161,14472 14521) Alignment (genomic DNA sequence = upper lines): TCAAATTCAT TTCTCCTTTC AACTACACCT CATCCAA-GA TTATCATTCA AAAATCCAAG 13050 ||||||||| | ||||||| |||| ||||| ||||||| | |||||||||| |||||||||| TCAAATTCAA TATTCCTTTC AACTTCACCT CATCCAATTA TTATCATTCA AAAATCCAAG 60 ATTCATTGTT TCTGCTAAAA AATCTGGACA AAATCAAGAA ACTACAACCA ATTCTGGCAA 13110 |||||||| | |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTCATTGAT TCTGCTAAAA AATCTGGACA AAATCAAGAA ACTACAACCA ATTCTGGCAA 120 CCCCTTCAAC TTTGATTTCG GTAATGTTCG GAACTGTGTG ATCATTTCAT CTAATATTTG 13170 |||||||||| |||||||||| CCCCTTCAAC TTTGATTTCG .......... .......... .......... .......... 140 ATCTGTTTTA TTTTTGGATA ATGTTGAACT GTGTGACCAT TTCATTTCAA TTTACTTAAT 13230 .......... .......... .......... .......... .......... .......... 140 TATGTATGTG GAGTTGTTTT TCTTATAATG TGTGATAGTG AGTCTTGAAT GCAAGCCTTG 13290 .......... .......... .......... .......... .......... .......... 140 CTAGGCGTCT GCTTGTTCTA ATACCATGTT GAATTGTGCG ATCATTTCAT CTGACTTTTT 13350 .......... .......... .......... .......... .......... .......... 140 ACTTAATTAT ATTCGTAGAA GTTTTTTTTT TTAATTTGAT AATGGGTGAC GGTAAGACTT 13410 .......... .......... .......... .......... .......... .......... 140 GGACGCAAGA CTTATGTTTG CTCTAATGCC ATATTTGAGA CTTGAACACT AGAAGTAAGT 13470 .......... .......... .......... .......... .......... .......... 140 TTGTTTGTTC TGATACCATG TTTAATTATG TATGCGTCTC ATCTAAATTG ACTTTGTTAT 13530 .......... .......... .......... .......... .......... .......... 140 TTTCGTATAG TTTCTGTTTT ATTATGGGTG ACAGTGAGAC TTGAAAGCAG AACTTGTGTT 13590 .......... .......... .......... .......... .......... .......... 140 TTTTCTATTG TCAAGTTGAA AATTGAATGT GAAACTACGT CTTAGGCCTG ACTCACACTC 13650 .......... .......... .......... .......... .......... .......... 140 CAAAAAATAG CTCTAATGGA AAGGATTGTC CAAACCTTAT AAGGAGTCCA TCCATCTCAT 13710 .......... .......... .......... .......... .......... .......... 140 TAACCACCGA TGTGGTCTTT TCTCCGTCTT TAACATTGAA CTCTAGGCGT TTGCTTGCTC 13770 .......... .......... .......... .......... .......... .......... 140 TAATACTATA TTGAATTGTG CGGTCATTTC ATTTGAATTT ACTTAATTAT GTCTGTAAAA 13830 .......... .......... .......... .......... .......... .......... 140 GTGTGTTCTG GTGTTTATTG AATTGTGTTA GTGTATTATC TGAAAGATTA GAAGACGAAC 13890 .......... .......... .......... .......... .......... .......... 140 ACACTTTTAG TTACTCAATT ACACTGTGTA TTCAACAGGT AAGTTACCTG ATGTGACGTC 13950 || |||||||||| |||||||||| .......... .......... .......... ........GT AAGTTACCTG ATGTGACGTC 162 TTTGATACCT GCTAGCACGA ACACATCTTC TGGATTGTCT TTTGGAAGGC AAAGGGCAAA 14010 |||||||||| |||||||||| |||||||||| ||||||| || |||||||||| |||||||||| TTTGATACCT GCTAGCACGA ACACATCTTC TGGATTGACT TTTGGAAGGC AAAGGGCAAA 222 GGATCCTGGA ACGGTGTTTG TTGCTGGTGC AACTGGGCAA GCTGGTATCC GCATTGCACA 14070 |||||||||| |||| ||||| |||||||||| |||||||||| |||||||| | |||||||||| GGATCCTGGA ACGGCGTTTG TTGCTGGTGC AACTGGGCAA GCTGGTATTC GCATTGCACA 282 GTTGCTGTTG CGTGAAGGTT ATAGTGTCAG AGCTGGAGTT TCTGACCTTG GTGCTGCACA 14130 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTGCTGTTG CGTGAAGGTT ATAGTGTCAG AGCTGGAGTT TCTGACCTTG GTGCTGCACA 342 AGAGCTAGCT CGTCTAGCCG TTAGCTACAA GGTCAGTCTC TTTGTCCTTG CAAAATATGG 14190 |||||||||| |||||||||| |||||||||| | AGAGCTAGCT CGTCTAGCCG TTAGCTACAA G......... .......... .......... 373 AACTTGTTAG AGTATCCGAC ATTGGTTGTG GGAATGAACT ATTGTCATAT ATGGTTTTGT 14250 .......... .......... .......... .......... .......... .......... 373 GCAATATTAA CTCTTGAGCC AACGTTTTGG TTGAATTAGG TTCAAGGTCC ATTTTTTTCT 14310 .......... .......... .......... .......... .......... .......... 373 ATCAGAGCCA TCTTTTCTTT GTTGTGTTTC ACAATATTAA GCCTGGATGT TATATCGTCC 14370 .......... .......... .......... .......... .......... .......... 373 ACGATCTAGA TGTCCAACTT CATGAGGGAG TGTTAGAGCG TCTCACATTG GTTGAGGGAA 14430 .......... .......... .......... .......... .......... .......... 373 TGGGTTGTTG TTTTCTGATT ATAAATGTTA AATTATTGCA GGTAATCTCT AACGATGAGT 14490 ||||||||| |||||||||| .......... .......... .......... .......... .GTAATCTCT AACGATGAGT 392 CAAAACGTCT GAATGCAGTT GCATCATCAT T 14521 |||||||||| |||||||||| |||||||||| | CAAAACGTCT GAATGCAGTT GCATCATCAT T 423 hqPGS_C06HBa0158P14.1-8+_SGN-E282426+ (12992 13130,13929 14161,14472 14521) ******************************************************************************** EST sequence 16 +strand 422 n (File: SGN-E313689+) 1 TCAAATTCAT TTCTCCTTTC AACTACACCT CATCCAAGAT TATCATTCAA AAATCCAAGA 61 TTCATTGTTT CTGCTAAAAA ATCTGGACAA AATCAAGAAA CTACAACCAA TTCTGGCAAC 121 CCCTTCAACT TTGATTTCGG TAAGTTACCT GATGTGACGT CTTTGATACC TGCTAGCACG 181 AACACATCTT CTGGATTGTC TTTTGGAAGG CAAAGGGCAA AGGATCCTGG AACGGTGTTT 241 GTTGCTGGTG CAACTGGGCA AGCTGGTATC CGCATTGCAC AGTTGCTGTT GCGTGAAGGT 301 TATAGTGTCA GAGCTGGAGT TTCTGACCTT GGTGCTGCAC AAGAGCTAGC TCGTCTAGCC 361 GTTAGCTACA AGGTAATCTC TAACGATGAG TCAAAACGTC TGAATGCAGT TGCATCATCA 421 TT Predicted gene structure (within gDNA segment 12392 to 15131): Exon 1 12992 13130 ( 139 n); cDNA 1 139 ( 139 n); score: 1.000 Intron 1 13131 13928 ( 798 n); Pd: 0.997 (s: 1.00), Pa: 0.996 (s: 1.00) Exon 2 13929 14161 ( 233 n); cDNA 140 372 ( 233 n); score: 1.000 Intron 2 14162 14471 ( 310 n); Pd: 0.999 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 3 14472 14521 ( 50 n); cDNA 373 422 ( 50 n); score: 1.000 MATCH C06HBa0158P14.1-8+ SGN-E313689+ 1.000 422 1.000 C PGS_C06HBa0158P14.1-8+_SGN-E313689+ (12992 13130,13929 14161,14472 14521) Alignment (genomic DNA sequence = upper lines): TCAAATTCAT TTCTCCTTTC AACTACACCT CATCCAAGAT TATCATTCAA AAATCCAAGA 13051 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCAAATTCAT TTCTCCTTTC AACTACACCT CATCCAAGAT TATCATTCAA AAATCCAAGA 60 TTCATTGTTT CTGCTAAAAA ATCTGGACAA AATCAAGAAA CTACAACCAA TTCTGGCAAC 13111 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCATTGTTT CTGCTAAAAA ATCTGGACAA AATCAAGAAA CTACAACCAA TTCTGGCAAC 120 CCCTTCAACT TTGATTTCGG TAATGTTCGG AACTGTGTGA TCATTTCATC TAATATTTGA 13171 |||||||||| ||||||||| CCCTTCAACT TTGATTTCG. .......... .......... .......... .......... 139 TCTGTTTTAT TTTTGGATAA TGTTGAACTG TGTGACCATT TCATTTCAAT TTACTTAATT 13231 .......... .......... .......... .......... .......... .......... 139 ATGTATGTGG AGTTGTTTTT CTTATAATGT GTGATAGTGA GTCTTGAATG CAAGCCTTGC 13291 .......... .......... .......... .......... .......... .......... 139 TAGGCGTCTG CTTGTTCTAA TACCATGTTG AATTGTGCGA TCATTTCATC TGACTTTTTA 13351 .......... .......... .......... .......... .......... .......... 139 CTTAATTATA TTCGTAGAAG TTTTTTTTTT TAATTTGATA ATGGGTGACG GTAAGACTTG 13411 .......... .......... .......... .......... .......... .......... 139 GACGCAAGAC TTATGTTTGC TCTAATGCCA TATTTGAGAC TTGAACACTA GAAGTAAGTT 13471 .......... .......... .......... .......... .......... .......... 139 TGTTTGTTCT GATACCATGT TTAATTATGT ATGCGTCTCA TCTAAATTGA CTTTGTTATT 13531 .......... .......... .......... .......... .......... .......... 139 TTCGTATAGT TTCTGTTTTA TTATGGGTGA CAGTGAGACT TGAAAGCAGA ACTTGTGTTT 13591 .......... .......... .......... .......... .......... .......... 139 TTTCTATTGT CAAGTTGAAA ATTGAATGTG AAACTACGTC TTAGGCCTGA CTCACACTCC 13651 .......... .......... .......... .......... .......... .......... 139 AAAAAATAGC TCTAATGGAA AGGATTGTCC AAACCTTATA AGGAGTCCAT CCATCTCATT 13711 .......... .......... .......... .......... .......... .......... 139 AACCACCGAT GTGGTCTTTT CTCCGTCTTT AACATTGAAC TCTAGGCGTT TGCTTGCTCT 13771 .......... .......... .......... .......... .......... .......... 139 AATACTATAT TGAATTGTGC GGTCATTTCA TTTGAATTTA CTTAATTATG TCTGTAAAAG 13831 .......... .......... .......... .......... .......... .......... 139 TGTGTTCTGG TGTTTATTGA ATTGTGTTAG TGTATTATCT GAAAGATTAG AAGACGAACA 13891 .......... .......... .......... .......... .......... .......... 139 CACTTTTAGT TACTCAATTA CACTGTGTAT TCAACAGGTA AGTTACCTGA TGTGACGTCT 13951 ||| |||||||||| |||||||||| .......... .......... .......... .......GTA AGTTACCTGA TGTGACGTCT 162 TTGATACCTG CTAGCACGAA CACATCTTCT GGATTGTCTT TTGGAAGGCA AAGGGCAAAG 14011 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGATACCTG CTAGCACGAA CACATCTTCT GGATTGTCTT TTGGAAGGCA AAGGGCAAAG 222 GATCCTGGAA CGGTGTTTGT TGCTGGTGCA ACTGGGCAAG CTGGTATCCG CATTGCACAG 14071 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATCCTGGAA CGGTGTTTGT TGCTGGTGCA ACTGGGCAAG CTGGTATCCG CATTGCACAG 282 TTGCTGTTGC GTGAAGGTTA TAGTGTCAGA GCTGGAGTTT CTGACCTTGG TGCTGCACAA 14131 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGCTGTTGC GTGAAGGTTA TAGTGTCAGA GCTGGAGTTT CTGACCTTGG TGCTGCACAA 342 GAGCTAGCTC GTCTAGCCGT TAGCTACAAG GTCAGTCTCT TTGTCCTTGC AAAATATGGA 14191 |||||||||| |||||||||| |||||||||| GAGCTAGCTC GTCTAGCCGT TAGCTACAAG .......... .......... .......... 372 ACTTGTTAGA GTATCCGACA TTGGTTGTGG GAATGAACTA TTGTCATATA TGGTTTTGTG 14251 .......... .......... .......... .......... .......... .......... 372 CAATATTAAC TCTTGAGCCA ACGTTTTGGT TGAATTAGGT TCAAGGTCCA TTTTTTTCTA 14311 .......... .......... .......... .......... .......... .......... 372 TCAGAGCCAT CTTTTCTTTG TTGTGTTTCA CAATATTAAG CCTGGATGTT ATATCGTCCA 14371 .......... .......... .......... .......... .......... .......... 372 CGATCTAGAT GTCCAACTTC ATGAGGGAGT GTTAGAGCGT CTCACATTGG TTGAGGGAAT 14431 .......... .......... .......... .......... .......... .......... 372 GGGTTGTTGT TTTCTGATTA TAAATGTTAA ATTATTGCAG GTAATCTCTA ACGATGAGTC 14491 |||||||||| |||||||||| .......... .......... .......... .......... GTAATCTCTA ACGATGAGTC 392 AAAACGTCTG AATGCAGTTG CATCATCATT 14521 |||||||||| |||||||||| |||||||||| AAAACGTCTG AATGCAGTTG CATCATCATT 422 hqPGS_C06HBa0158P14.1-8+_SGN-E313689+ (12992 13130,13929 14161,14472 14521) ******************************************************************************** EST sequence 6 +strand 614 n (File: SGN-E203096+) 1 GCACGAGATT ATCATTCAAA AATCCAAGAT TCATTGTTTC TGCTAAAAAA TCTGGACAAA 61 ATCAAGAAAC TACAACCAAT TCTGGCAACC CCTTCAACTT TGATTTCGGT AAGTTACCTG 121 ATGTGACGTC TTTGATACCT GCTAGCACGA ACACATCTTC TGGATTGTCT TTTGGAAGGC 181 AAAGGGCAAA GGATCCTGGA ACGGTGTTTG TTGCTGGTGC AACTGGGCAA GCTGGTATCC 241 GCATTGCACA GTTGCTGTTG CGTGAAGGTT ATAGTGTCAG AGCTGGAGTT TCTGACCTTG 301 GTGCTGCACA AGAGCTAGCT CGTCTAGCCG TTAGCTACAA GGTAATCTCT AACGATGAGT 361 CAAAACGTCT GAATGCAGTT GCATCATCAT TTCAAGATGC AGAATCGATT GCAAAGGCAA 421 TCGGAAATGC TAACAAAGTT GTGGTTACTA TTAGTAAGGG AGAGGACGGT CCTGCGACTG 481 AAGTCACCAC AACAGATGCT GTACAAGTTA TAGAAGCAGC ACAATTAGCT GGCGTTGGAC 541 ATGTGGCCAT AGTCTATGAT GAATCTTCTC CAGTAGGCTC TACATACAAT GTGCTCGACG 601 GAATTACATC ATTC Predicted gene structure (within gDNA segment 12378 to 15354): Exon 1 13028 13130 ( 103 n); cDNA 6 108 ( 103 n); score: 1.000 Intron 1 13131 13928 ( 798 n); Pd: 0.997 (s: 1.00), Pa: 0.996 (s: 1.00) Exon 2 13929 14161 ( 233 n); cDNA 109 341 ( 233 n); score: 1.000 Intron 2 14162 14471 ( 310 n); Pd: 0.999 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 3 14472 14744 ( 273 n); cDNA 342 614 ( 273 n); score: 1.000 MATCH C06HBa0158P14.1-8+ SGN-E203096+ 1.000 609 0.992 C PGS_C06HBa0158P14.1-8+_SGN-E203096+ (13028 13130,13929 14161,14472 14744) Alignment (genomic DNA sequence = upper lines): AGATTATCAT TCAAAAATCC AAGATTCATT GTTTCTGCTA AAAAATCTGG ACAAAATCAA 13087 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGATTATCAT TCAAAAATCC AAGATTCATT GTTTCTGCTA AAAAATCTGG ACAAAATCAA 65 GAAACTACAA CCAATTCTGG CAACCCCTTC AACTTTGATT TCGGTAATGT TCGGAACTGT 13147 |||||||||| |||||||||| |||||||||| |||||||||| ||| GAAACTACAA CCAATTCTGG CAACCCCTTC AACTTTGATT TCG....... .......... 108 GTGATCATTT CATCTAATAT TTGATCTGTT TTATTTTTGG ATAATGTTGA ACTGTGTGAC 13207 .......... .......... .......... .......... .......... .......... 108 CATTTCATTT CAATTTACTT AATTATGTAT GTGGAGTTGT TTTTCTTATA ATGTGTGATA 13267 .......... .......... .......... .......... .......... .......... 108 GTGAGTCTTG AATGCAAGCC TTGCTAGGCG TCTGCTTGTT CTAATACCAT GTTGAATTGT 13327 .......... .......... .......... .......... .......... .......... 108 GCGATCATTT CATCTGACTT TTTACTTAAT TATATTCGTA GAAGTTTTTT TTTTTAATTT 13387 .......... .......... .......... .......... .......... .......... 108 GATAATGGGT GACGGTAAGA CTTGGACGCA AGACTTATGT TTGCTCTAAT GCCATATTTG 13447 .......... .......... .......... .......... .......... .......... 108 AGACTTGAAC ACTAGAAGTA AGTTTGTTTG TTCTGATACC ATGTTTAATT ATGTATGCGT 13507 .......... .......... .......... .......... .......... .......... 108 CTCATCTAAA TTGACTTTGT TATTTTCGTA TAGTTTCTGT TTTATTATGG GTGACAGTGA 13567 .......... .......... .......... .......... .......... .......... 108 GACTTGAAAG CAGAACTTGT GTTTTTTCTA TTGTCAAGTT GAAAATTGAA TGTGAAACTA 13627 .......... .......... .......... .......... .......... .......... 108 CGTCTTAGGC CTGACTCACA CTCCAAAAAA TAGCTCTAAT GGAAAGGATT GTCCAAACCT 13687 .......... .......... .......... .......... .......... .......... 108 TATAAGGAGT CCATCCATCT CATTAACCAC CGATGTGGTC TTTTCTCCGT CTTTAACATT 13747 .......... .......... .......... .......... .......... .......... 108 GAACTCTAGG CGTTTGCTTG CTCTAATACT ATATTGAATT GTGCGGTCAT TTCATTTGAA 13807 .......... .......... .......... .......... .......... .......... 108 TTTACTTAAT TATGTCTGTA AAAGTGTGTT CTGGTGTTTA TTGAATTGTG TTAGTGTATT 13867 .......... .......... .......... .......... .......... .......... 108 ATCTGAAAGA TTAGAAGACG AACACACTTT TAGTTACTCA ATTACACTGT GTATTCAACA 13927 .......... .......... .......... .......... .......... .......... 108 GGTAAGTTAC CTGATGTGAC GTCTTTGATA CCTGCTAGCA CGAACACATC TTCTGGATTG 13987 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .GTAAGTTAC CTGATGTGAC GTCTTTGATA CCTGCTAGCA CGAACACATC TTCTGGATTG 167 TCTTTTGGAA GGCAAAGGGC AAAGGATCCT GGAACGGTGT TTGTTGCTGG TGCAACTGGG 14047 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTTTTGGAA GGCAAAGGGC AAAGGATCCT GGAACGGTGT TTGTTGCTGG TGCAACTGGG 227 CAAGCTGGTA TCCGCATTGC ACAGTTGCTG TTGCGTGAAG GTTATAGTGT CAGAGCTGGA 14107 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAGCTGGTA TCCGCATTGC ACAGTTGCTG TTGCGTGAAG GTTATAGTGT CAGAGCTGGA 287 GTTTCTGACC TTGGTGCTGC ACAAGAGCTA GCTCGTCTAG CCGTTAGCTA CAAGGTCAGT 14167 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||| GTTTCTGACC TTGGTGCTGC ACAAGAGCTA GCTCGTCTAG CCGTTAGCTA CAAG...... 341 CTCTTTGTCC TTGCAAAATA TGGAACTTGT TAGAGTATCC GACATTGGTT GTGGGAATGA 14227 .......... .......... .......... .......... .......... .......... 341 ACTATTGTCA TATATGGTTT TGTGCAATAT TAACTCTTGA GCCAACGTTT TGGTTGAATT 14287 .......... .......... .......... .......... .......... .......... 341 AGGTTCAAGG TCCATTTTTT TCTATCAGAG CCATCTTTTC TTTGTTGTGT TTCACAATAT 14347 .......... .......... .......... .......... .......... .......... 341 TAAGCCTGGA TGTTATATCG TCCACGATCT AGATGTCCAA CTTCATGAGG GAGTGTTAGA 14407 .......... .......... .......... .......... .......... .......... 341 GCGTCTCACA TTGGTTGAGG GAATGGGTTG TTGTTTTCTG ATTATAAATG TTAAATTATT 14467 .......... .......... .......... .......... .......... .......... 341 GCAGGTAATC TCTAACGATG AGTCAAAACG TCTGAATGCA GTTGCATCAT CATTTCAAGA 14527 |||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ....GTAATC TCTAACGATG AGTCAAAACG TCTGAATGCA GTTGCATCAT CATTTCAAGA 397 TGCAGAATCG ATTGCAAAGG CAATCGGAAA TGCTAACAAA GTTGTGGTTA CTATTAGTAA 14587 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCAGAATCG ATTGCAAAGG CAATCGGAAA TGCTAACAAA GTTGTGGTTA CTATTAGTAA 457 GGGAGAGGAC GGTCCTGCGA CTGAAGTCAC CACAACAGAT GCTGTACAAG TTATAGAAGC 14647 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGGAGAGGAC GGTCCTGCGA CTGAAGTCAC CACAACAGAT GCTGTACAAG TTATAGAAGC 517 AGCACAATTA GCTGGCGTTG GACATGTGGC CATAGTCTAT GATGAATCTT CTCCAGTAGG 14707 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCACAATTA GCTGGCGTTG GACATGTGGC CATAGTCTAT GATGAATCTT CTCCAGTAGG 577 CTCTACATAC AATGTGCTCG ACGGAATTAC ATCATTC 14744 |||||||||| |||||||||| |||||||||| ||||||| CTCTACATAC AATGTGCTCG ACGGAATTAC ATCATTC 614 hqPGS_C06HBa0158P14.1-8+_SGN-E203096+ (13028 13130,13929 14161,14472 14744) ******************************************************************************** EST sequence 15 +strand 161 n (File: SGN-E313592+) 1 AAAAATCTGG ACAAAATCAA GAAACTACAA CCACTTCTGG CAACCCCTTC AACTTTGATC 61 TCGGTAAGTT ACCTGATGTG ACGTCTTTGA TACCTGCTAG CACGAACACA TCTTCTGGAT 121 TGTCTTTTGG AAGGCAAAGG GCAAAGGATC CTGGAACGGT G Predicted gene structure (within gDNA segment 12468 to 14636): Exon 1 13068 13130 ( 63 n); cDNA 1 63 ( 63 n); score: 0.968 Intron 1 13131 13928 ( 798 n); Pd: 0.997 (s: 0.96), Pa: 0.996 (s: 1.00) Exon 2 13929 14026 ( 98 n); cDNA 64 161 ( 98 n); score: 1.000 MATCH C06HBa0158P14.1-8+ SGN-E313592+ 0.988 161 1.000 C PGS_C06HBa0158P14.1-8+_SGN-E313592+ (13068 13130,13929 14026) Alignment (genomic DNA sequence = upper lines): AAAAATCTGG ACAAAATCAA GAAACTACAA CCAATTCTGG CAACCCCTTC AACTTTGATT 13127 |||||||||| |||||||||| |||||||||| ||| |||||| |||||||||| ||||||||| AAAAATCTGG ACAAAATCAA GAAACTACAA CCACTTCTGG CAACCCCTTC AACTTTGATC 60 TCGGTAATGT TCGGAACTGT GTGATCATTT CATCTAATAT TTGATCTGTT TTATTTTTGG 13187 ||| TCG....... .......... .......... .......... .......... .......... 63 ATAATGTTGA ACTGTGTGAC CATTTCATTT CAATTTACTT AATTATGTAT GTGGAGTTGT 13247 .......... .......... .......... .......... .......... .......... 63 TTTTCTTATA ATGTGTGATA GTGAGTCTTG AATGCAAGCC TTGCTAGGCG TCTGCTTGTT 13307 .......... .......... .......... .......... .......... .......... 63 CTAATACCAT GTTGAATTGT GCGATCATTT CATCTGACTT TTTACTTAAT TATATTCGTA 13367 .......... .......... .......... .......... .......... .......... 63 GAAGTTTTTT TTTTTAATTT GATAATGGGT GACGGTAAGA CTTGGACGCA AGACTTATGT 13427 .......... .......... .......... .......... .......... .......... 63 TTGCTCTAAT GCCATATTTG AGACTTGAAC ACTAGAAGTA AGTTTGTTTG TTCTGATACC 13487 .......... .......... .......... .......... .......... .......... 63 ATGTTTAATT ATGTATGCGT CTCATCTAAA TTGACTTTGT TATTTTCGTA TAGTTTCTGT 13547 .......... .......... .......... .......... .......... .......... 63 TTTATTATGG GTGACAGTGA GACTTGAAAG CAGAACTTGT GTTTTTTCTA TTGTCAAGTT 13607 .......... .......... .......... .......... .......... .......... 63 GAAAATTGAA TGTGAAACTA CGTCTTAGGC CTGACTCACA CTCCAAAAAA TAGCTCTAAT 13667 .......... .......... .......... .......... .......... .......... 63 GGAAAGGATT GTCCAAACCT TATAAGGAGT CCATCCATCT CATTAACCAC CGATGTGGTC 13727 .......... .......... .......... .......... .......... .......... 63 TTTTCTCCGT CTTTAACATT GAACTCTAGG CGTTTGCTTG CTCTAATACT ATATTGAATT 13787 .......... .......... .......... .......... .......... .......... 63 GTGCGGTCAT TTCATTTGAA TTTACTTAAT TATGTCTGTA AAAGTGTGTT CTGGTGTTTA 13847 .......... .......... .......... .......... .......... .......... 63 TTGAATTGTG TTAGTGTATT ATCTGAAAGA TTAGAAGACG AACACACTTT TAGTTACTCA 13907 .......... .......... .......... .......... .......... .......... 63 ATTACACTGT GTATTCAACA GGTAAGTTAC CTGATGTGAC GTCTTTGATA CCTGCTAGCA 13967 ||||||||| |||||||||| |||||||||| |||||||||| .......... .......... .GTAAGTTAC CTGATGTGAC GTCTTTGATA CCTGCTAGCA 102 CGAACACATC TTCTGGATTG TCTTTTGGAA GGCAAAGGGC AAAGGATCCT GGAACGGTG 14026 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| CGAACACATC TTCTGGATTG TCTTTTGGAA GGCAAAGGGC AAAGGATCCT GGAACGGTG 161 hqPGS_C06HBa0158P14.1-8+_SGN-E313592+ (13068 13130,13929 14026) ******************************************************************************** EST sequence 9 +strand 411 n (File: SGN-E279781+) 1 TTTTATAAAA CACTCAAATT TATTTTATAC TAAAAGGCAA AAGAGGAAAG GTAAAGCATC 61 AAACTTCTCA AGTAAAGTAC AAGGAGCTGC ATCTCAGCTA AATTTTTGAA CAGATTCAGT 121 AAATCTGTAG ATATTGCAAC AGTTCAAGGT CAGCTATATT GACAATAATT TCATTATAAA 181 ACTTTCTATC AGAAAGCAAA GCTATTCTGG CAACCCCATC AACTTTGATT TCGGTAAGTT 241 ACCTGATGTG ACGTCTTTGA TACCTGCTAG CACGAACACA TCTTCTGGAT TGTCTTTTGG 301 AAGGCAAAGG GCAAAGGATC CTGGAACGGT GTCTGTTGCT GGTGCAACTG GGCAAGCTGG 361 TATCCGCATT GCACAGTTGC TGTTGCGTGA AGGTTATAGT GTCAGAGCTG G Predicted gene structure (within gDNA segment 10408 to 14716): Exon 1 11398 11430 ( 33 n); cDNA 119 148 ( 30 n); score: 0.606 Intron 1 11431 11989 ( 559 n); Pd: 0.971 (s: 0), Pa: 0.742 (s: 0.56) Exon 2 11990 12032 ( 43 n); cDNA 149 187 ( 39 n); score: 0.558 Intron 2 12033 13082 (1050 n); Pd: 0.375 (s: 0.56), Pa: 0.000 (s: 0.85) Exon 3 13083 13130 ( 48 n); cDNA 188 233 ( 46 n); score: 0.854 Intron 3 13131 13928 ( 798 n); Pd: 0.997 (s: 0.85), Pa: 0.996 (s: 1.00) Exon 4 13929 14106 ( 178 n); cDNA 234 411 ( 178 n); score: 0.994 MATCH C06HBa0158P14.1-8+ SGN-E279781+ 0.994 302 0.735 C PGS_C06HBa0158P14.1-8+_SGN-E279781+ (11398 11430,11990 12032,13083 13130,13929 14106) Alignment (genomic DNA sequence = upper lines): GTACATGCTG ATTGGGCTTA CAATTAGAGA AAGGTGAGTT CTTCATTCTT TAGATCTAGA 11457 ||| || ||| | | || ||| || ||| GTAAAT-CTG -TAGATATTG CAA-CAGTTC AAG....... .......... .......... 148 GGTGACAAAA GTAGCTCATG AAATCATAAT CCGCTCAATC CGTCAAAAGT TTGAATTGAT 11517 .......... .......... .......... .......... .......... .......... 148 TATTCACCTG TTCATTTATT AGCTCAATTC GTTTGGACTC CGTAACTCGA ATTGATCCAT 11577 .......... .......... .......... .......... .......... .......... 148 GAAAATTTTG TCTAAATATT TCCTAAAACT CCTCTTTTCT TAAAAAATAA ATAAATTGAT 11637 .......... .......... .......... .......... .......... .......... 148 ACTATTTTTT TTTTGTAGAT TTTACATAAA TTAGTTTTAA TATGAAATTA CAAATAAATT 11697 .......... .......... .......... .......... .......... .......... 148 TAGTTTCTAA TTATATTTAT CTCTTAAAAG TTAAAAAAAA ATCAGATACA ATAATTGAAG 11757 .......... .......... .......... .......... .......... .......... 148 CTCGGATACA TTAATATGTA GGTCGGATAC ATTAAATACT GTCTTTGATA CATTAATATG 11817 .......... .......... .......... .......... .......... .......... 148 TAGCTTGAAT ACATTAAATA ATTATCTGTA TCTGTTCAAA ATAATTATAC AGAAAAGATT 11877 .......... .......... .......... .......... .......... .......... 148 TAAATTTAGC GCAAAATTTA AATCACTTTC TGTATAATTA TTTTGAACAG ATAATTAGTT 11937 .......... .......... .......... .......... .......... .......... 148 ATAGATATTA TCTGTTCCAG AAAAAAGCTG GATCACATGT TTTTTCAAAT AGATAAGGGT 11997 | | | | .......... .......... .......... .......... .......... ..GTCA-GCT 155 CAACTACCAA AATAAATGGC ACCAGAAAAC CTTGTGTATT ATTTTTTCTT TTTCATTTTT 12057 | | | ||| ||| | | | ||||| || | -ATAT-TGAC AAT-AATTTC ATTATAAAAC TTTCT..... .......... .......... 187 ACTTATGGTC GTGTTTCACT TTATGAAAAT TAATTTGATT AATATTCAGA ACTAAATTGA 12117 .......... .......... .......... .......... .......... .......... 187 ATTAGATTAA GTATTTAAGA TTTTTTACTC TTAACTAGAT GCTCAAATAC TACCAAAATC 12177 .......... .......... .......... .......... .......... .......... 187 ACTACAAGTT GTAATCCTTT TTATATTTGA TAATTTGATA GGATGGAAAA AATATATTTT 12237 .......... .......... .......... .......... .......... .......... 187 AAAATGTTAA TTAAAGTTTA TCCAATTTAA CTCTCGAAAA GCAAAACGTA ATAAGTAAAA 12297 .......... .......... .......... .......... .......... .......... 187 GTGAAAGAAG GAGTAATTTG AAGATGCAGT GGTGTGATTA TTTAACCTTT AACTAGAGGT 12357 .......... .......... .......... .......... .......... .......... 187 CTCGGATTCA AACTCTGAAT ATGAAGAAAA TCATGTTGAG AGTGTCATTC CAAACAATTT 12417 .......... .......... .......... .......... .......... .......... 187 TTACCACAAT AAAATCTAAG CATTTGTCCG AAAAATAAAA TAAAATCAAA ACCAAAACAA 12477 .......... .......... .......... .......... .......... .......... 187 AGTACTCTAT CTTCCCCATG AAATATTATT CGAATTTTGA GAGTCAAGCA ATTTAATTTT 12537 .......... .......... .......... .......... .......... .......... 187 AACAACAAAA TTGAGCATGA ATTTAAAAGT TTTTTTATAT ATATTCCGAT CATAATTTAG 12597 .......... .......... .......... .......... .......... .......... 187 AGGTACTTAT ATTATAATCC AAATAAATGA TAAACATTAT GTTAATTTGT TTGAATCGAA 12657 .......... .......... .......... .......... .......... .......... 187 CAAAATGTTT TGAAAAATTT GTCACTATTT TTGCACCAAT TAGAAACGAC TGGCTTGAAT 12717 .......... .......... .......... .......... .......... .......... 187 TTTCTTTTGT AGATAAAATT TGACGTGGCA TTATTTCATT GGAAATCCAC TTTCCTCATC 12777 .......... .......... .......... .......... .......... .......... 187 CATCCAAATG GACAAATTTT TTCAATCCAA AAACTGTTTT CTGAGACCAG AATCAAATGC 12837 .......... .......... .......... .......... .......... .......... 187 CACAGATATA CAATTTCATA TATTTTTTTT AAAAAAAAAA ACACAATTTT CATGCAAAAT 12897 .......... .......... .......... .......... .......... .......... 187 ATAGTAACTA AATAGAAAGA ATTAGCAATT CATCTGCTAT TTCTTTCAAA AAAAATAAAA 12957 .......... .......... .......... .......... .......... .......... 187 TAAAAATTCA TATCCTATGG CTCCAACTCT TACTTCAAAT TCATTTCTCC TTTCAACTAC 13017 .......... .......... .......... .......... .......... .......... 187 ACCTCATCCA AGATTATCAT TCAAAAATCC AAGATTCATT GTTTCTGCTA AAAAATCTGG 13077 .......... .......... .......... .......... .......... .......... 187 ACAAAATCAA GAAACTACAA CCAATTCTGG CAACCCCTTC AACTTTGATT TCGGTAATGT 13137 ||| | |||| | || | ||||||| ||||||| || |||||||||| ||| .....ATC-A GAAAGCA-AA GCTATTCTGG CAACCCCATC AACTTTGATT TCG....... 233 TCGGAACTGT GTGATCATTT CATCTAATAT TTGATCTGTT TTATTTTTGG ATAATGTTGA 13197 .......... .......... .......... .......... .......... .......... 233 ACTGTGTGAC CATTTCATTT CAATTTACTT AATTATGTAT GTGGAGTTGT TTTTCTTATA 13257 .......... .......... .......... .......... .......... .......... 233 ATGTGTGATA GTGAGTCTTG AATGCAAGCC TTGCTAGGCG TCTGCTTGTT CTAATACCAT 13317 .......... .......... .......... .......... .......... .......... 233 GTTGAATTGT GCGATCATTT CATCTGACTT TTTACTTAAT TATATTCGTA GAAGTTTTTT 13377 .......... .......... .......... .......... .......... .......... 233 TTTTTAATTT GATAATGGGT GACGGTAAGA CTTGGACGCA AGACTTATGT TTGCTCTAAT 13437 .......... .......... .......... .......... .......... .......... 233 GCCATATTTG AGACTTGAAC ACTAGAAGTA AGTTTGTTTG TTCTGATACC ATGTTTAATT 13497 .......... .......... .......... .......... .......... .......... 233 ATGTATGCGT CTCATCTAAA TTGACTTTGT TATTTTCGTA TAGTTTCTGT TTTATTATGG 13557 .......... .......... .......... .......... .......... .......... 233 GTGACAGTGA GACTTGAAAG CAGAACTTGT GTTTTTTCTA TTGTCAAGTT GAAAATTGAA 13617 .......... .......... .......... .......... .......... .......... 233 TGTGAAACTA CGTCTTAGGC CTGACTCACA CTCCAAAAAA TAGCTCTAAT GGAAAGGATT 13677 .......... .......... .......... .......... .......... .......... 233 GTCCAAACCT TATAAGGAGT CCATCCATCT CATTAACCAC CGATGTGGTC TTTTCTCCGT 13737 .......... .......... .......... .......... .......... .......... 233 CTTTAACATT GAACTCTAGG CGTTTGCTTG CTCTAATACT ATATTGAATT GTGCGGTCAT 13797 .......... .......... .......... .......... .......... .......... 233 TTCATTTGAA TTTACTTAAT TATGTCTGTA AAAGTGTGTT CTGGTGTTTA TTGAATTGTG 13857 .......... .......... .......... .......... .......... .......... 233 TTAGTGTATT ATCTGAAAGA TTAGAAGACG AACACACTTT TAGTTACTCA ATTACACTGT 13917 .......... .......... .......... .......... .......... .......... 233 GTATTCAACA GGTAAGTTAC CTGATGTGAC GTCTTTGATA CCTGCTAGCA CGAACACATC 13977 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... .GTAAGTTAC CTGATGTGAC GTCTTTGATA CCTGCTAGCA CGAACACATC 282 TTCTGGATTG TCTTTTGGAA GGCAAAGGGC AAAGGATCCT GGAACGGTGT TTGTTGCTGG 14037 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| TTCTGGATTG TCTTTTGGAA GGCAAAGGGC AAAGGATCCT GGAACGGTGT CTGTTGCTGG 342 TGCAACTGGG CAAGCTGGTA TCCGCATTGC ACAGTTGCTG TTGCGTGAAG GTTATAGTGT 14097 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCAACTGGG CAAGCTGGTA TCCGCATTGC ACAGTTGCTG TTGCGTGAAG GTTATAGTGT 402 CAGAGCTGG 14106 ||||||||| CAGAGCTGG 411 hqPGS_C06HBa0158P14.1-8+_SGN-E279781+ (13083 13130,13929 14106) ******************************************************************************** EST sequence 13 +strand 412 n (File: SGN-E285596+) 1 CCCCTTCAAC TTTGATTTCG GTAAGTTACC TGATGTGACG TCTTTGATAC CTGCTAGCAC 61 GAACACATCT TCTGGATTGT CTTTTGGAAG GCAAAGGGCA AAGGATCCTG GAACGGTGTT 121 TGTTGCTGGT GCAACTGGGC AAGCTGGTAT CCGCATTGCA CAGTTGCTGT TGCGTGAAGG 181 TTATAGTGTC AGAGCTGGAG TTTCTGACCT TGGTGCTGCA CAAGAGCTAG CTCGTCTAGC 241 CGTTAGCTAC AAGGTAATCT CTAACGATGA GTCAAAACGT CTGAATGCAG TTGCATCATC 301 ATTTCAAGAT GCAGAATCGA TTGCAAAGGC AATCGGAAAT GCTAACAAAG TTGTGGTTAC 361 TATTAGTAAG GGAGAGGACG GTCCTGCGAC TGAAGTCACC ACAACAGATG CT Predicted gene structure (within gDNA segment 13138 to 15240): Exon 1 13929 14161 ( 233 n); cDNA 21 253 ( 233 n); score: 1.000 Intron 1 14162 14471 ( 310 n); Pd: 0.999 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 2 14472 14630 ( 159 n); cDNA 254 412 ( 159 n); score: 1.000 MATCH C06HBa0158P14.1-8+ SGN-E285596+ 1.000 392 0.951 C PGS_C06HBa0158P14.1-8+_SGN-E285596+ (13929 14161,14472 14630) Alignment (genomic DNA sequence = upper lines): GTAAGTTACC TGATGTGACG TCTTTGATAC CTGCTAGCAC GAACACATCT TCTGGATTGT 13988 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTAAGTTACC TGATGTGACG TCTTTGATAC CTGCTAGCAC GAACACATCT TCTGGATTGT 80 CTTTTGGAAG GCAAAGGGCA AAGGATCCTG GAACGGTGTT TGTTGCTGGT GCAACTGGGC 14048 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTTTGGAAG GCAAAGGGCA AAGGATCCTG GAACGGTGTT TGTTGCTGGT GCAACTGGGC 140 AAGCTGGTAT CCGCATTGCA CAGTTGCTGT TGCGTGAAGG TTATAGTGTC AGAGCTGGAG 14108 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGCTGGTAT CCGCATTGCA CAGTTGCTGT TGCGTGAAGG TTATAGTGTC AGAGCTGGAG 200 TTTCTGACCT TGGTGCTGCA CAAGAGCTAG CTCGTCTAGC CGTTAGCTAC AAGGTCAGTC 14168 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||| TTTCTGACCT TGGTGCTGCA CAAGAGCTAG CTCGTCTAGC CGTTAGCTAC AAG....... 253 TCTTTGTCCT TGCAAAATAT GGAACTTGTT AGAGTATCCG ACATTGGTTG TGGGAATGAA 14228 .......... .......... .......... .......... .......... .......... 253 CTATTGTCAT ATATGGTTTT GTGCAATATT AACTCTTGAG CCAACGTTTT GGTTGAATTA 14288 .......... .......... .......... .......... .......... .......... 253 GGTTCAAGGT CCATTTTTTT CTATCAGAGC CATCTTTTCT TTGTTGTGTT TCACAATATT 14348 .......... .......... .......... .......... .......... .......... 253 AAGCCTGGAT GTTATATCGT CCACGATCTA GATGTCCAAC TTCATGAGGG AGTGTTAGAG 14408 .......... .......... .......... .......... .......... .......... 253 CGTCTCACAT TGGTTGAGGG AATGGGTTGT TGTTTTCTGA TTATAAATGT TAAATTATTG 14468 .......... .......... .......... .......... .......... .......... 253 CAGGTAATCT CTAACGATGA GTCAAAACGT CTGAATGCAG TTGCATCATC ATTTCAAGAT 14528 ||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ...GTAATCT CTAACGATGA GTCAAAACGT CTGAATGCAG TTGCATCATC ATTTCAAGAT 310 GCAGAATCGA TTGCAAAGGC AATCGGAAAT GCTAACAAAG TTGTGGTTAC TATTAGTAAG 14588 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCAGAATCGA TTGCAAAGGC AATCGGAAAT GCTAACAAAG TTGTGGTTAC TATTAGTAAG 370 GGAGAGGACG GTCCTGCGAC TGAAGTCACC ACAACAGATG CT 14630 |||||||||| |||||||||| |||||||||| |||||||||| || GGAGAGGACG GTCCTGCGAC TGAAGTCACC ACAACAGATG CT 412 hqPGS_C06HBa0158P14.1-8+_SGN-E285596+ (13929 14161,14472 14630) ******************************************************************************** EST sequence 1 +strand 501 n (File: SGN-E325839+) 1 TGACGTCTTT GATACCTGCT AGCACGAACA CATCTTCTGG ATTGTCTTTT GGAAGGCAAA 61 GGGCAAAGGA TCCTGGAACG GTGTTTGTTG CTGGTGCAAC TGGGCAAGCT GGTATCCGCA 121 TTGCACAGTT GCTGTTGCGT GAAGGTTATA GTGTCAGAGC TGGAGTTTCT GACCTTGGTG 181 CTGCACAAGA GCTAGCTCGT CTAGCCGTTA GCTACAAGGT AATCTCTAAC GATGAGTCAA 241 AACGTCTGAA TGCAGTTGCA TCATCATTTC AAGATGCAGA ATCGATTGCA AAGGCAATCG 301 GAAATGCTAA CAAAGTTGTG GTTACTATTA GTAAGGGAGA GGACGGTCCT GCGACTGAAG 361 TCACCACAAC AGATGCTGTA CAAGTTATAG AAGCAGCACA ATTAGCTGGC GTTGGACATG 421 TGGCCATAGT CTATGATGAA TCTTCTCCAG TAGGCTCTAC ATACAATGTG CTCGACGGAA 481 TTACATCATT CTTCAACAAT C Predicted gene structure (within gDNA segment 13344 to 15364): Exon 1 13944 14161 ( 218 n); cDNA 1 218 ( 218 n); score: 1.000 Intron 1 14162 14471 ( 310 n); Pd: 0.999 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 2 14472 14754 ( 283 n); cDNA 219 501 ( 283 n); score: 1.000 MATCH C06HBa0158P14.1-8+ SGN-E325839+ 1.000 501 1.000 C PGS_C06HBa0158P14.1-8+_SGN-E325839+ (13944 14161,14472 14754) Alignment (genomic DNA sequence = upper lines): TGACGTCTTT GATACCTGCT AGCACGAACA CATCTTCTGG ATTGTCTTTT GGAAGGCAAA 14003 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGACGTCTTT GATACCTGCT AGCACGAACA CATCTTCTGG ATTGTCTTTT GGAAGGCAAA 60 GGGCAAAGGA TCCTGGAACG GTGTTTGTTG CTGGTGCAAC TGGGCAAGCT GGTATCCGCA 14063 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGGCAAAGGA TCCTGGAACG GTGTTTGTTG CTGGTGCAAC TGGGCAAGCT GGTATCCGCA 120 TTGCACAGTT GCTGTTGCGT GAAGGTTATA GTGTCAGAGC TGGAGTTTCT GACCTTGGTG 14123 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGCACAGTT GCTGTTGCGT GAAGGTTATA GTGTCAGAGC TGGAGTTTCT GACCTTGGTG 180 CTGCACAAGA GCTAGCTCGT CTAGCCGTTA GCTACAAGGT CAGTCTCTTT GTCCTTGCAA 14183 |||||||||| |||||||||| |||||||||| |||||||| CTGCACAAGA GCTAGCTCGT CTAGCCGTTA GCTACAAG.. .......... .......... 218 AATATGGAAC TTGTTAGAGT ATCCGACATT GGTTGTGGGA ATGAACTATT GTCATATATG 14243 .......... .......... .......... .......... .......... .......... 218 GTTTTGTGCA ATATTAACTC TTGAGCCAAC GTTTTGGTTG AATTAGGTTC AAGGTCCATT 14303 .......... .......... .......... .......... .......... .......... 218 TTTTTCTATC AGAGCCATCT TTTCTTTGTT GTGTTTCACA ATATTAAGCC TGGATGTTAT 14363 .......... .......... .......... .......... .......... .......... 218 ATCGTCCACG ATCTAGATGT CCAACTTCAT GAGGGAGTGT TAGAGCGTCT CACATTGGTT 14423 .......... .......... .......... .......... .......... .......... 218 GAGGGAATGG GTTGTTGTTT TCTGATTATA AATGTTAAAT TATTGCAGGT AATCTCTAAC 14483 || |||||||||| .......... .......... .......... .......... ........GT AATCTCTAAC 230 GATGAGTCAA AACGTCTGAA TGCAGTTGCA TCATCATTTC AAGATGCAGA ATCGATTGCA 14543 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATGAGTCAA AACGTCTGAA TGCAGTTGCA TCATCATTTC AAGATGCAGA ATCGATTGCA 290 AAGGCAATCG GAAATGCTAA CAAAGTTGTG GTTACTATTA GTAAGGGAGA GGACGGTCCT 14603 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGGCAATCG GAAATGCTAA CAAAGTTGTG GTTACTATTA GTAAGGGAGA GGACGGTCCT 350 GCGACTGAAG TCACCACAAC AGATGCTGTA CAAGTTATAG AAGCAGCACA ATTAGCTGGC 14663 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCGACTGAAG TCACCACAAC AGATGCTGTA CAAGTTATAG AAGCAGCACA ATTAGCTGGC 410 GTTGGACATG TGGCCATAGT CTATGATGAA TCTTCTCCAG TAGGCTCTAC ATACAATGTG 14723 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTGGACATG TGGCCATAGT CTATGATGAA TCTTCTCCAG TAGGCTCTAC ATACAATGTG 470 CTCGACGGAA TTACATCATT CTTCAACAAT C 14754 |||||||||| |||||||||| |||||||||| | CTCGACGGAA TTACATCATT CTTCAACAAT C 501 hqPGS_C06HBa0158P14.1-8+_SGN-E325839+ (13944 14161,14472 14754) ******************************************************************************** EST sequence 3 +strand 360 n (File: SGN-E202828+) 1 AGTTTCTGAC CTTGGTGCTG CACAAGAGCT AGCTCGTCTA GCCGTTAGCT ACAAGGTAAT 61 CTCTAACGAT GAGTCAAAAC GTCTGAATGC AGTTGCATCA TCATTTCAAG ATGCAGAATC 121 GATTGCAAAG GCAATCGGAA ATGCTAACAA AGTTGTGGTT ACTATTAGTA AGGGAGAGGA 181 CGGTCCTGCG ACTGAAGTCA CCACAACAGA TGCTGTACAA GTTATAGAAG CAGCACAATT 241 AGCTGGCGTT GGACATGTGG CCATAGTCTA TGATGAATCT TCTCCAGTAG GCTCTACATA 301 CAATGTGCTC GACGGAATTA CATCATTCTT CAACAATCTG TTCTCAAAAT CTCAACCGTT Predicted gene structure (within gDNA segment 13507 to 15386): Exon 1 14107 14161 ( 55 n); cDNA 1 55 ( 55 n); score: 1.000 Intron 1 14162 14471 ( 310 n); Pd: 0.999 (s: 1.00), Pa: 0.998 (s: 1.00) Exon 2 14472 14776 ( 305 n); cDNA 56 360 ( 305 n); score: 1.000 MATCH C06HBa0158P14.1-8+ SGN-E202828+ 1.000 360 1.000 C PGS_C06HBa0158P14.1-8+_SGN-E202828+ (14107 14161,14472 14776) Alignment (genomic DNA sequence = upper lines): AGTTTCTGAC CTTGGTGCTG CACAAGAGCT AGCTCGTCTA GCCGTTAGCT ACAAGGTCAG 14166 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||| AGTTTCTGAC CTTGGTGCTG CACAAGAGCT AGCTCGTCTA GCCGTTAGCT ACAAG..... 55 TCTCTTTGTC CTTGCAAAAT ATGGAACTTG TTAGAGTATC CGACATTGGT TGTGGGAATG 14226 .......... .......... .......... .......... .......... .......... 55 AACTATTGTC ATATATGGTT TTGTGCAATA TTAACTCTTG AGCCAACGTT TTGGTTGAAT 14286 .......... .......... .......... .......... .......... .......... 55 TAGGTTCAAG GTCCATTTTT TTCTATCAGA GCCATCTTTT CTTTGTTGTG TTTCACAATA 14346 .......... .......... .......... .......... .......... .......... 55 TTAAGCCTGG ATGTTATATC GTCCACGATC TAGATGTCCA ACTTCATGAG GGAGTGTTAG 14406 .......... .......... .......... .......... .......... .......... 55 AGCGTCTCAC ATTGGTTGAG GGAATGGGTT GTTGTTTTCT GATTATAAAT GTTAAATTAT 14466 .......... .......... .......... .......... .......... .......... 55 TGCAGGTAAT CTCTAACGAT GAGTCAAAAC GTCTGAATGC AGTTGCATCA TCATTTCAAG 14526 ||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .....GTAAT CTCTAACGAT GAGTCAAAAC GTCTGAATGC AGTTGCATCA TCATTTCAAG 110 ATGCAGAATC GATTGCAAAG GCAATCGGAA ATGCTAACAA AGTTGTGGTT ACTATTAGTA 14586 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGCAGAATC GATTGCAAAG GCAATCGGAA ATGCTAACAA AGTTGTGGTT ACTATTAGTA 170 AGGGAGAGGA CGGTCCTGCG ACTGAAGTCA CCACAACAGA TGCTGTACAA GTTATAGAAG 14646 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGGAGAGGA CGGTCCTGCG ACTGAAGTCA CCACAACAGA TGCTGTACAA GTTATAGAAG 230 CAGCACAATT AGCTGGCGTT GGACATGTGG CCATAGTCTA TGATGAATCT TCTCCAGTAG 14706 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAGCACAATT AGCTGGCGTT GGACATGTGG CCATAGTCTA TGATGAATCT TCTCCAGTAG 290 GCTCTACATA CAATGTGCTC GACGGAATTA CATCATTCTT CAACAATCTG TTCTCAAAAT 14766 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTCTACATA CAATGTGCTC GACGGAATTA CATCATTCTT CAACAATCTG TTCTCAAAAT 350 CTCAACCGTT 14776 |||||||||| CTCAACCGTT 360 hqPGS_C06HBa0158P14.1-8+_SGN-E202828+ (14107 14161,14472 14776) ******************************************************************************** EST sequence 8 +strand 331 n (File: SGN-E281302+) 1 AGTTTCTGAC CTTGGTGCTG CACAAGAGCT ATCTCGTCTA GCCGTTAGCT ACAAGGTAAT 61 CTCTAACGAT GAGTCAAAAC GTCCGAATGC AGTTGCATCA TCATTTCAAG ATGCAGAATC 121 GATTGCAAAG GCAATCGGAA ATGCTAACAA AGTTGTGGTT ACTATTAGTA AGGGAGAGGA 181 CGGTCCTGCG ACTGAAGTCA CCACAACAGA TGCTGTACAA GTTATAGAAG CAGCACAATT 241 AGCTGGCGTT GGACATGTGG CCATAGTCTA TGATGAATCT TCTCCAGTAG GCTCTACATA 301 CAATGTGCTC GACGGAATTA CATCATTCTT C Predicted gene structure (within gDNA segment 13507 to 15357): Exon 1 14107 14161 ( 55 n); cDNA 1 55 ( 55 n); score: 0.982 Intron 1 14162 14471 ( 310 n); Pd: 0.999 (s: 0.98), Pa: 0.998 (s: 0.98) Exon 2 14472 14747 ( 276 n); cDNA 56 331 ( 276 n); score: 0.996 MATCH C06HBa0158P14.1-8+ SGN-E281302+ 0.994 331 1.000 C PGS_C06HBa0158P14.1-8+_SGN-E281302+ (14107 14161,14472 14747) Alignment (genomic DNA sequence = upper lines): AGTTTCTGAC CTTGGTGCTG CACAAGAGCT AGCTCGTCTA GCCGTTAGCT ACAAGGTCAG 14166 |||||||||| |||||||||| |||||||||| | |||||||| |||||||||| ||||| AGTTTCTGAC CTTGGTGCTG CACAAGAGCT ATCTCGTCTA GCCGTTAGCT ACAAG..... 55 TCTCTTTGTC CTTGCAAAAT ATGGAACTTG TTAGAGTATC CGACATTGGT TGTGGGAATG 14226 .......... .......... .......... .......... .......... .......... 55 AACTATTGTC ATATATGGTT TTGTGCAATA TTAACTCTTG AGCCAACGTT TTGGTTGAAT 14286 .......... .......... .......... .......... .......... .......... 55 TAGGTTCAAG GTCCATTTTT TTCTATCAGA GCCATCTTTT CTTTGTTGTG TTTCACAATA 14346 .......... .......... .......... .......... .......... .......... 55 TTAAGCCTGG ATGTTATATC GTCCACGATC TAGATGTCCA ACTTCATGAG GGAGTGTTAG 14406 .......... .......... .......... .......... .......... .......... 55 AGCGTCTCAC ATTGGTTGAG GGAATGGGTT GTTGTTTTCT GATTATAAAT GTTAAATTAT 14466 .......... .......... .......... .......... .......... .......... 55 TGCAGGTAAT CTCTAACGAT GAGTCAAAAC GTCTGAATGC AGTTGCATCA TCATTTCAAG 14526 ||||| |||||||||| |||||||||| ||| |||||| |||||||||| |||||||||| .....GTAAT CTCTAACGAT GAGTCAAAAC GTCCGAATGC AGTTGCATCA TCATTTCAAG 110 ATGCAGAATC GATTGCAAAG GCAATCGGAA ATGCTAACAA AGTTGTGGTT ACTATTAGTA 14586 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGCAGAATC GATTGCAAAG GCAATCGGAA ATGCTAACAA AGTTGTGGTT ACTATTAGTA 170 AGGGAGAGGA CGGTCCTGCG ACTGAAGTCA CCACAACAGA TGCTGTACAA GTTATAGAAG 14646 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGGAGAGGA CGGTCCTGCG ACTGAAGTCA CCACAACAGA TGCTGTACAA GTTATAGAAG 230 CAGCACAATT AGCTGGCGTT GGACATGTGG CCATAGTCTA TGATGAATCT TCTCCAGTAG 14706 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAGCACAATT AGCTGGCGTT GGACATGTGG CCATAGTCTA TGATGAATCT TCTCCAGTAG 290 GCTCTACATA CAATGTGCTC GACGGAATTA CATCATTCTT C 14747 |||||||||| |||||||||| |||||||||| |||||||||| | GCTCTACATA CAATGTGCTC GACGGAATTA CATCATTCTT C 331 hqPGS_C06HBa0158P14.1-8+_SGN-E281302+ (14107 14161,14472 14747) ******************************************************************************** EST sequence 14 +strand 531 n (File: SGN-E290882+) 1 GCAAAGGAAC CTGAAGAGAA GGCGTCATCA CCTTCCGTTC CTTCTGTTGA AAGTCTACTA 61 GACAAAGCAA AAGACTTTAG TACAGGATTT TCATTTGAAA AACTCAGCTC ACAGCTCAAA 121 TCAGCTGTTG AAAAGGCTAA CGAGGAATCA GACGCTCAAG TTGCTACCGT TAGGGGACAG 181 GCCAAGGCTA AAAATTTGCC TGCTCAGAAA GCAGTGGTGA AAACTCCTCC AAGGAAACCA 241 TTTGCTTCGA AAACGAAGAA GGAGGCTCCG AAACCAGCTA AACAAACAGA GGTTGCTTCA 301 ACAGAGAAGA GGAAGATTTT TGGTGGACTG TTTCAACAAG AAACCATCTA TGTTGATGAC 361 TAAGATGAAT GAATAAGAGA AAGCCAAAAT ATTAATTTTC TATATATCAT TTTAGCCTAA 421 TTATGAGGTT ACAAACAATG GTTTAACTGA GGCTGAGTGA GAAAGCATGT AAATCCCTGC 481 ACATTTTCTG TGGATCTTAG TGTATATTTG CCTCAAATGC AAAAAAAAAA A Predicted gene structure (within gDNA segment 15577 to 17398): Exon 1 16177 16698 ( 522 n); cDNA 1 522 ( 522 n); score: 1.000 MATCH C06HBa0158P14.1-8+ SGN-E290882+ 1.000 522 0.983 C PGS_C06HBa0158P14.1-8+_SGN-E290882+ (16177 16698) Alignment (genomic DNA sequence = upper lines): GCAAAGGAAC CTGAAGAGAA GGCGTCATCA CCTTCCGTTC CTTCTGTTGA AAGTCTACTA 16236 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCAAAGGAAC CTGAAGAGAA GGCGTCATCA CCTTCCGTTC CTTCTGTTGA AAGTCTACTA 60 GACAAAGCAA AAGACTTTAG TACAGGATTT TCATTTGAAA AACTCAGCTC ACAGCTCAAA 16296 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GACAAAGCAA AAGACTTTAG TACAGGATTT TCATTTGAAA AACTCAGCTC ACAGCTCAAA 120 TCAGCTGTTG AAAAGGCTAA CGAGGAATCA GACGCTCAAG TTGCTACCGT TAGGGGACAG 16356 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCAGCTGTTG AAAAGGCTAA CGAGGAATCA GACGCTCAAG TTGCTACCGT TAGGGGACAG 180 GCCAAGGCTA AAAATTTGCC TGCTCAGAAA GCAGTGGTGA AAACTCCTCC AAGGAAACCA 16416 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCCAAGGCTA AAAATTTGCC TGCTCAGAAA GCAGTGGTGA AAACTCCTCC AAGGAAACCA 240 TTTGCTTCGA AAACGAAGAA GGAGGCTCCG AAACCAGCTA AACAAACAGA GGTTGCTTCA 16476 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTGCTTCGA AAACGAAGAA GGAGGCTCCG AAACCAGCTA AACAAACAGA GGTTGCTTCA 300 ACAGAGAAGA GGAAGATTTT TGGTGGACTG TTTCAACAAG AAACCATCTA TGTTGATGAC 16536 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACAGAGAAGA GGAAGATTTT TGGTGGACTG TTTCAACAAG AAACCATCTA TGTTGATGAC 360 TAAGATGAAT GAATAAGAGA AAGCCAAAAT ATTAATTTTC TATATATCAT TTTAGCCTAA 16596 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAAGATGAAT GAATAAGAGA AAGCCAAAAT ATTAATTTTC TATATATCAT TTTAGCCTAA 420 TTATGAGGTT ACAAACAATG GTTTAACTGA GGCTGAGTGA GAAAGCATGT AAATCCCTGC 16656 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTATGAGGTT ACAAACAATG GTTTAACTGA GGCTGAGTGA GAAAGCATGT AAATCCCTGC 480 ACATTTTCTG TGGATCTTAG TGTATATTTG CCTCAAATGC AA 16698 |||||||||| |||||||||| |||||||||| |||||||||| || ACATTTTCTG TGGATCTTAG TGTATATTTG CCTCAAATGC AA 522 hqPGS_C06HBa0158P14.1-8+_SGN-E290882+ (16177 16698) ******************************************************************************** EST sequence 5 +strand 299 n (File: SGN-E296399+) 1 TTTAGTACAG GATTTTCATT TGAAAAACTC ATCTCTCAGC TCAAATCAGC TGTTGAAAAG 61 GCTAACGAGG AATCAGACGC TCAAGTTGCT ACCGTTAGGG GACAGGCCAA GGCTAAAAAT 121 TTGCCTGCTC AGAAAGCAGT GGTGAAAACT CCTCCAAGGA AACCATTTGC TTCGAAAACG 181 AAGAAGGAGG CTCCGAAACC AGCTAAACAA ACAGAGGTTG CTTCAACAGA GAAGAGGAAG 241 ATTTTTGGTG GACTGTTTCA ACAAGAAACC ATCTATGTTG ATGACTAAGA TGAATGAAT Predicted gene structure (within gDNA segment 15652 to 17160): Exon 1 16252 16550 ( 299 n); cDNA 1 299 ( 299 n); score: 0.993 MATCH C06HBa0158P14.1-8+ SGN-E296399+ 0.993 299 1.000 C PGS_C06HBa0158P14.1-8+_SGN-E296399+ (16252 16550) Alignment (genomic DNA sequence = upper lines): TTTAGTACAG GATTTTCATT TGAAAAACTC AGCTCACAGC TCAAATCAGC TGTTGAAAAG 16311 |||||||||| |||||||||| |||||||||| | ||| |||| |||||||||| |||||||||| TTTAGTACAG GATTTTCATT TGAAAAACTC ATCTCTCAGC TCAAATCAGC TGTTGAAAAG 60 GCTAACGAGG AATCAGACGC TCAAGTTGCT ACCGTTAGGG GACAGGCCAA GGCTAAAAAT 16371 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTAACGAGG AATCAGACGC TCAAGTTGCT ACCGTTAGGG GACAGGCCAA GGCTAAAAAT 120 TTGCCTGCTC AGAAAGCAGT GGTGAAAACT CCTCCAAGGA AACCATTTGC TTCGAAAACG 16431 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGCCTGCTC AGAAAGCAGT GGTGAAAACT CCTCCAAGGA AACCATTTGC TTCGAAAACG 180 AAGAAGGAGG CTCCGAAACC AGCTAAACAA ACAGAGGTTG CTTCAACAGA GAAGAGGAAG 16491 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGAAGGAGG CTCCGAAACC AGCTAAACAA ACAGAGGTTG CTTCAACAGA GAAGAGGAAG 240 ATTTTTGGTG GACTGTTTCA ACAAGAAACC ATCTATGTTG ATGACTAAGA TGAATGAAT 16550 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| ATTTTTGGTG GACTGTTTCA ACAAGAAACC ATCTATGTTG ATGACTAAGA TGAATGAAT 299 hqPGS_C06HBa0158P14.1-8+_SGN-E296399+ (16252 16550) ******************************************************************************** EST sequence 18 -strand 468 n (File: SGN-E203097-) 1 TTTCATTTGA AAAACTCAGC TCACAGCTCA AATCGGCTGT TGAAAAGGCT AACGAGGAAT 61 CAGACGCTCA AGTTGCTACC GTTAGGGGAC AGGCCAAGGC TAAAAATTTG CCTGCTCAGA 121 AAGCAGTGGT GAAAACTCCT CCAAGGAAAC CATTTGCTTC GAAAACGAAG AAGGAGGCTC 181 CGAAACCAGC TAAACAAACA GAGGTTGCTT CAACAGAGAA GAGGAAGATT TTTGGTGGAC 241 TGTTTCAACA AGAAACCATC TATGTTGATG ACTAAGATGA ATGAATAAGA GAAAGCCAAA 301 ATATTAATTT TCTATATATC ATTTTAGCCT AATTATGAGG TTACAAACAA TGGTTTAACT 361 GAGGCTGAGT GAGAAAGCAT GTAAATCCCT GCACATTTTC TGTGGATCTT AGTGTATATT 421 TGCCTCAAAT GCAACATTCA GGCACTTGTT CAAAAAAAAA AAAAAAAA Predicted gene structure (within gDNA segment 15655 to 17476): Exon 1 16265 16705 ( 441 n); cDNA 1 441 ( 441 n); score: 0.998 PPA cDNA 452 468 MATCH C06HBa0158P14.1-8+ SGN-E203097- 0.998 441 0.942 C PGS_C06HBa0158P14.1-8+_SGN-E203097- (16265 16705) Alignment (genomic DNA sequence = upper lines): TTTCATTTGA AAAACTCAGC TCACAGCTCA AATCAGCTGT TGAAAAGGCT AACGAGGAAT 16324 |||||||||| |||||||||| |||||||||| |||| ||||| |||||||||| |||||||||| TTTCATTTGA AAAACTCAGC TCACAGCTCA AATCGGCTGT TGAAAAGGCT AACGAGGAAT 60 CAGACGCTCA AGTTGCTACC GTTAGGGGAC AGGCCAAGGC TAAAAATTTG CCTGCTCAGA 16384 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAGACGCTCA AGTTGCTACC GTTAGGGGAC AGGCCAAGGC TAAAAATTTG CCTGCTCAGA 120 AAGCAGTGGT GAAAACTCCT CCAAGGAAAC CATTTGCTTC GAAAACGAAG AAGGAGGCTC 16444 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGCAGTGGT GAAAACTCCT CCAAGGAAAC CATTTGCTTC GAAAACGAAG AAGGAGGCTC 180 CGAAACCAGC TAAACAAACA GAGGTTGCTT CAACAGAGAA GAGGAAGATT TTTGGTGGAC 16504 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGAAACCAGC TAAACAAACA GAGGTTGCTT CAACAGAGAA GAGGAAGATT TTTGGTGGAC 240 TGTTTCAACA AGAAACCATC TATGTTGATG ACTAAGATGA ATGAATAAGA GAAAGCCAAA 16564 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTTTCAACA AGAAACCATC TATGTTGATG ACTAAGATGA ATGAATAAGA GAAAGCCAAA 300 ATATTAATTT TCTATATATC ATTTTAGCCT AATTATGAGG TTACAAACAA TGGTTTAACT 16624 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATATTAATTT TCTATATATC ATTTTAGCCT AATTATGAGG TTACAAACAA TGGTTTAACT 360 GAGGCTGAGT GAGAAAGCAT GTAAATCCCT GCACATTTTC TGTGGATCTT AGTGTATATT 16684 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGGCTGAGT GAGAAAGCAT GTAAATCCCT GCACATTTTC TGTGGATCTT AGTGTATATT 420 TGCCTCAAAT GCAACATTCA G 16705 |||||||||| |||||||||| | TGCCTCAAAT GCAACATTCA G 441 hqPGS_C06HBa0158P14.1-8+_SGN-E203097- (16265 16705) Total number of EST alignments reported: 19 ________________________________________________________________________________ Predicted gene locations (3) in segment 1 to 17857: PGL 1 (+ strand): 2290 2517 AGS-1 (2290 2517) SCR (e 0.982) Exon 1 2290 2517 ( 228 n); score: 0.982 PGS (2290 2517) SGN-E296857- 3-phase translation of AGS-1 (+strand): . . . . . . 2290 TACTGGATTGTGGCATCAGAAATCTCATTTGGTGGAATGCAAACTAGGAATTCCAGTTAG Y W I V A S E I S F G G M Q T R N S S - T G L W H Q K S H L V E C K L G I P V R L D C G I R N L I W W N A N - E F Q L . . . . . . 2350 ACCCTTTAGGCCTTTTTTCTTACTACTTGTTTAGATTTGGTAGATTTATAGGTAAAAAAT T L - A F F L T T C L D L V D L - V K N P F R P F F L L L V - I W - I Y R - K I D P L G L F S Y Y L F R F G R F I G K K . . . . . . 2410 TGCATAAATTGCTCTAAAGTTCTTAGAGCTAGGTCATTTCTGATTGTAGCTTCTTATTCA C I N C S K V L R A R S F L I V A S Y S A - I A L K F L E L G H F - L - L L I Q L H K L L - S S - S - V I S D C S F L F . . . . . 2470 GAAAGGAGCTTGAGGACATAATACATGATAAGATTGTTGTTTCGATCA E R S L R T - Y M I R L L F R S K G A - G H N T - - D C C F D R K E L E D I I H D K I V V S I Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-1 (-strand): . . . . . . 2517 TGATCGAAACAACAATCTTATCATGTATTATGTCCTCAAGCTCCTTTCTGAATAAGAAGC - S K Q Q S Y H V L C P Q A P F - I R S D R N N N L I M Y Y V L K L L S E - E A I E T T I L S C I M S S S S F L N K K . . . . . . 2457 TACAATCAGAAATGACCTAGCTCTAAGAACTTTAGAGCAATTTATGCAATTTTTTACCTA Y N Q K - P S S K N F R A I Y A I F Y L T I R N D L A L R T L E Q F M Q F F T Y L Q S E M T - L - E L - S N L C N F L P . . . . . . 2397 TAAATCTACCAAATCTAAACAAGTAGTAAGAAAAAAGGCCTAAAGGGTCTAACTGGAATT - I Y Q I - T S S K K K G L K G L T G I K S T K S K Q V V R K K A - R V - L E F I N L P N L N K - - E K R P K G S N W N . . . . . 2337 CCTAGTTTGCATTCCACCAAATGAGATTTCTGATGCCACAATCCAGTA P S L H S T K - D F - C H N P V L V C I P P N E I S D A T I Q S - F A F H Q M R F L M P Q S S Maximal non-overlapping open reading frames (>= 64 codons): none PGL 2 (+ strand): 12841 14776 AGS-1 (12841 13130,13929 14161,14472 14776) SCR (e 1.000 d 0.997 a 0.996,e 1.000 d 0.999 a 0.998,e 1.000) Exon 1 12841 13130 ( 290 n); score: 1.000 Intron 1 13131 13928 ( 798 n); Pd: 0.997 Pa: 0.996 Exon 2 13929 14161 ( 233 n); score: 1.000 Intron 2 14162 14471 ( 310 n); Pd: 0.999 Pa: 0.998 Exon 3 14472 14776 ( 305 n); score: 1.000 PGS (12841 13130,13929 14161,14472 14585) SGN-E284451+ PGS (12847 13130,13929 14161,14472 14558) SGN-E348094+ PGS (12894 13130,13929 14050) SGN-E244213+ PGS (12926 13130,13929 14161,14472 14561) SGN-E288958+ PGS (12987 13130,13929 14161,14472 14691) SGN-E310470+ PGS (12988 13130,13929 14161,14472 14580) SGN-E293193+ PGS (12992 13130,13929 14161,14472 14521) SGN-E282426+ PGS (12992 13130,13929 14161,14472 14521) SGN-E313689+ PGS (13028 13130,13929 14161,14472 14744) SGN-E203096+ PGS (13068 13130,13929 14026) SGN-E313592+ PGS (13083 13130,13929 14106) SGN-E279781+ PGS (13929 14161,14472 14630) SGN-E285596+ PGS (13944 14161,14472 14754) SGN-E325839+ PGS (14107 14161,14472 14776) SGN-E202828+ PGS (14107 14161,14472 14747) SGN-E281302+ 3-phase translation of AGS-1 (+strand): . . . . . . 12841 AGATATACAATTTCATATATTTTTTTTAAAAAAAAAAACACAATTTTCATGCAAAATATA R Y T I S Y I F F K K K N T I F M Q N I D I Q F H I F F L K K K T Q F S C K I - I Y N F I Y F F - K K K H N F H A K Y . . . . . . 12901 GTAACTAAATAGAAAGAATTAGCAATTCATCTGCTATTTCTTTCAAAAAAAATAAAATAA V T K - K E L A I H L L F L S K K I K - - L N R K N - Q F I C Y F F Q K K - N K S N - I E R I S N S S A I S F K K N K I . . . . . . 12961 AAATTCATATCCTATGGCTCCAACTCTTACTTCAAATTCATTTCTCCTTTCAACTACACC K F I S Y G S N S Y F K F I S P F N Y T N S Y P M A P T L T S N S F L L S T T P K I H I L W L Q L L L Q I H F S F Q L H . . . . . . 13021 TCATCCAAGATTATCATTCAAAAATCCAAGATTCATTGTTTCTGCTAAAAAATCTGGACA S S K I I I Q K S K I H C F C - K I W T H P R L S F K N P R F I V S A K K S G Q L I Q D Y H S K I Q D S L F L L K N L D . . . . . : . 13081 AAATCAAGAAACTACAACCAATTCTGGCAACCCCTTCAACTTTGATTTCG : GTAAGTTACC K S R N Y N Q F W Q P L Q L - F R : - V T N Q E T T T N S G N P F N F D F : G K L P K I K K L Q P I L A T P S T L I S : V S Y . . . . . . 13939 TGATGTGACGTCTTTGATACCTGCTAGCACGAACACATCTTCTGGATTGTCTTTTGGAAG - C D V F D T C - H E H I F W I V F W K D V T S L I P A S T N T S S G L S F G R L M - R L - Y L L A R T H L L D C L L E . . . . . . 13999 GCAAAGGGCAAAGGATCCTGGAACGGTGTTTGTTGCTGGTGCAACTGGGCAAGCTGGTAT A K G K G S W N G V C C W C N W A S W Y Q R A K D P G T V F V A G A T G Q A G I G K G Q R I L E R C L L L V Q L G K L V . . . . . . 14059 CCGCATTGCACAGTTGCTGTTGCGTGAAGGTTATAGTGTCAGAGCTGGAGTTTCTGACCT P H C T V A V A - R L - C Q S W S F - P R I A Q L L L R E G Y S V R A G V S D L S A L H S C C C V K V I V S E L E F L T . . . . . : . 14119 TGGTGCTGCACAAGAGCTAGCTCGTCTAGCCGTTAGCTACAAG : GTAATCTCTAACGATGA W C C T R A S S S S R - L Q : G N L - R - G A A Q E L A R L A V S Y K : V I S N D E L V L H K S - L V - P L A T R : - S L T M . . . . . . 14489 GTCAAAACGTCTGAATGCAGTTGCATCATCATTTCAAGATGCAGAATCGATTGCAAAGGC V K T S E C S C I I I S R C R I D C K G S K R L N A V A S S F Q D A E S I A K A S Q N V - M Q L H H H F K M Q N R L Q R . . . . . . 14549 AATCGGAAATGCTAACAAAGTTGTGGTTACTATTAGTAAGGGAGAGGACGGTCCTGCGAC N R K C - Q S C G Y Y - - G R G R S C D I G N A N K V V V T I S K G E D G P A T Q S E M L T K L W L L L V R E R T V L R . . . . . . 14609 TGAAGTCACCACAACAGATGCTGTACAAGTTATAGAAGCAGCACAATTAGCTGGCGTTGG - S H H N R C C T S Y R S S T I S W R W E V T T T D A V Q V I E A A Q L A G V G L K S P Q Q M L Y K L - K Q H N - L A L . . . . . . 14669 ACATGTGGCCATAGTCTATGATGAATCTTCTCCAGTAGGCTCTACATACAATGTGCTCGA T C G H S L - - I F S S R L Y I Q C A R H V A I V Y D E S S P V G S T Y N V L D D M W P - S M M N L L Q - A L H T M C S . . . . . 14729 CGGAATTACATCATTCTTCAACAATCTGTTCTCAAAATCTCAACCGTT R N Y I I L Q Q S V L K I S T V G I T S F F N N L F S K S Q P T E L H H S S T I C S Q N L N R Maximal non-overlapping open reading frames (>= 64 codons): >C06HBa0158P14.1-8+_PGL-2_AGS-1_PPS_1 (12956 13130,13929 14161,14472 14774) (frame '2'; 711 bp, 237 residues) 1 NKNSYPMAPT LTSNSFLLST TPHPRLSFKN PRFIVSAKKS GQNQETTTNS GNPFNFDFGK 61 LPDVTSLIPA STNTSSGLSF GRQRAKDPGT VFVAGATGQA GIRIAQLLLR EGYSVRAGVS 121 DLGAAQELAR LAVSYKVISN DESKRLNAVA SSFQDAESIA KAIGNANKVV VTISKGEDGP 181 ATEVTTTDAV QVIEAAQLAG VGHVAIVYDE SSPVGSTYNV LDGITSFFNN LFSKSQP PGL 3 (+ strand): 16177 16705 AGS-1 (16177 16705) SCR (e 1.000) Exon 1 16177 16705 ( 529 n); score: 1.000 PGS (16177 16698) SGN-E290882+ PGS (16252 16550) SGN-E296399+ PGS (16265 16705) SGN-E203097- 3-phase translation of AGS-1 (+strand): . . . . . . 16177 GCAAAGGAACCTGAAGAGAAGGCGTCATCACCTTCCGTTCCTTCTGTTGAAAGTCTACTA A K E P E E K A S S P S V P S V E S L L Q R N L K R R R H H L P F L L L K V Y - K G T - R E G V I T F R S F C - K S T . . . . . . 16237 GACAAAGCAAAAGACTTTAGTACAGGATTTTCATTTGAAAAACTCAGCTCACAGCTCAAA D K A K D F S T G F S F E K L S S Q L K T K Q K T L V Q D F H L K N S A H S S N R Q S K R L - Y R I F I - K T Q L T A Q . . . . . . 16297 TCAGCTGTTGAAAAGGCTAACGAGGAATCAGACGCTCAAGTTGCTACCGTTAGGGGACAG S A V E K A N E E S D A Q V A T V R G Q Q L L K R L T R N Q T L K L L P L G D R I S C - K G - R G I R R S S C Y R - G T . . . . . . 16357 GCCAAGGCTAAAAATTTGCCTGCTCAGAAAGCAGTGGTGAAAACTCCTCCAAGGAAACCA A K A K N L P A Q K A V V K T P P R K P P R L K I C L L R K Q W - K L L Q G N H G Q G - K F A C S E S S G E N S S K E T . . . . . . 16417 TTTGCTTCGAAAACGAAGAAGGAGGCTCCGAAACCAGCTAAACAAACAGAGGTTGCTTCA F A S K T K K E A P K P A K Q T E V A S L L R K R R R R L R N Q L N K Q R L L Q I C F E N E E G G S E T S - T N R G C F . . . . . . 16477 ACAGAGAAGAGGAAGATTTTTGGTGGACTGTTTCAACAAGAAACCATCTATGTTGATGAC T E K R K I F G G L F Q Q E T I Y V D D Q R R G R F L V D C F N K K P S M L M T N R E E E D F W W T V S T R N H L C - - . . . . . . 16537 TAAGATGAATGAATAAGAGAAAGCCAAAATATTAATTTTCTATATATCATTTTAGCCTAA - D E - I R E S Q N I N F L Y I I L A - K M N E - E K A K I L I F Y I S F - P N L R - M N K R K P K Y - F S I Y H F S L . . . . . . 16597 TTATGAGGTTACAAACAATGGTTTAACTGAGGCTGAGTGAGAAAGCATGTAAATCCCTGC L - G Y K Q W F N - G - V R K H V N P C Y E V T N N G L T E A E - E S M - I P A I M R L Q T M V - L R L S E K A C K S L . . . . . 16657 ACATTTTCTGTGGATCTTAGTGTATATTTGCCTCAAATGCAACATTCAG T F S V D L S V Y L P Q M Q H S H F L W I L V Y I C L K C N I Q H I F C G S - C I F A S N A T F Maximal non-overlapping open reading frames (>= 64 codons): >C06HBa0158P14.1-8+_PGL-3_AGS-1_PPS_1 (16177 16539) (frame '1'; 360 bp, 120 residues) 1 AKEPEEKASS PSVPSVESLL DKAKDFSTGF SFEKLSSQLK SAVEKANEES DAQVATVRGQ 61 AKAKNLPAQK AVVKTPPRKP FASKTKKEAP KPAKQTEVAS TEKRKIFGGL FQQETIYVDD 121 - 3-phase translation of AGS-1 (-strand): . . . . . . 16705 CTGAATGTTGCATTTGAGGCAAATATACACTAAGATCCACAGAAAATGTGCAGGGATTTA L N V A F E A N I H - D P Q K M C R D L - M L H L R Q I Y T K I H R K C A G I Y E C C I - G K Y T L R S T E N V Q G F . . . . . . 16645 CATGCTTTCTCACTCAGCCTCAGTTAAACCATTGTTTGTAACCTCATAATTAGGCTAAAA H A F S L S L S - T I V C N L I I R L K M L S H S A S V K P L F V T S - L G - N T C F L T Q P Q L N H C L - P H N - A K . . . . . . 16585 TGATATATAGAAAATTAATATTTTGGCTTTCTCTTATTCATTCATCTTAGTCATCAACAT - Y I E N - Y F G F L L F I H L S H Q H D I - K I N I L A F S Y S F I L V I N I M I Y R K L I F W L S L I H S S - S S T . . . . . . 16525 AGATGGTTTCTTGTTGAAACAGTCCACCAAAAATCTTCCTCTTCTCTGTTGAAGCAACCT R W F L V E T V H Q K S S S S L L K Q P D G F L L K Q S T K N L P L L C - S N L - M V S C - N S P P K I F L F S V E A T . . . . . . 16465 CTGTTTGTTTAGCTGGTTTCGGAGCCTCCTTCTTCGTTTTCGAAGCAAATGGTTTCCTTG L F V - L V S E P P S S F S K Q M V S L C L F S W F R S L L L R F R S K W F P W S V C L A G F G A S F F V F E A N G F L . . . . . . 16405 GAGGAGTTTTCACCACTGCTTTCTGAGCAGGCAAATTTTTAGCCTTGGCCTGTCCCCTAA E E F S P L L S E Q A N F - P W P V P - R S F H H C F L S R Q I F S L G L S P N G G V F T T A F - A G K F L A L A C P L . . . . . . 16345 CGGTAGCAACTTGAGCGTCTGATTCCTCGTTAGCCTTTTCAACAGCTGATTTGAGCTGTG R - Q L E R L I P R - P F Q Q L I - A V G S N L S V - F L V S L F N S - F E L - T V A T - A S D S S L A F S T A D L S C . . . . . . 16285 AGCTGAGTTTTTCAAATGAAAATCCTGTACTAAAGTCTTTTGCTTTGTCTAGTAGACTTT S - V F Q M K I L Y - S L L L C L V D F A E F F K - K S C T K V F C F V - - T F E L S F S N E N P V L K S F A L S S R L . . . . . 16225 CAACAGAAGGAACGGAAGGTGATGACGCCTTCTCTTCAGGTTCCTTTGC Q Q K E R K V M T P S L Q V P L N R R N G R - - R L L F R F L C S T E G T E G D D A F S S G S F Maximal non-overlapping open reading frames (>= 64 codons): none ... finished at: Mon Aug 28 22:10:52 2006 ________________________________________________________________________________ Sequence 9: C06HBa0158P14.1-9, from 1 to 4358, both strands analyzed. ... started at: Mon Aug 28 22:10:52 2006 EST library file: /tmp/cxgn-bacpublish-resources-E8LUak/sgn_ests; matching gDNA +strand ... ... found all matches, elapsed seconds = 3 ... matches indexed, elapsed seconds = 3 HitsTableSize = 3 EST library file: /tmp/cxgn-bacpublish-resources-E8LUak/sgn_ests; matching gDNA -strand ... ... found all matches, elapsed seconds = 3 ... matches indexed, elapsed seconds = 3 HitsTableSize = 10 ******************************************************************************** EST sequence 3 -strand 366 n (File: SGN-E230327-) 1 ATATGAAGGG TCTGATTTTC ATAATTACCA TCATCGACTG CTCTACACAA AGTCTGGAAA 61 CTACTCATCG ACTTTCGTTT ACATGGACTG GTTATTTGGT ACTGATAAGG GTTACAGAAA 121 GTTGAAGATG CTGAAGGAGC AAGAGGGCAA AGCAATGTAA ACAAGATGGG AAAGTAAAGG 181 GGGAATAAAA TTACATGTTT GTTTGAGTGT ATAAGAAATA GTACTGAACA GATTCTATTA 241 GTAATGATGA GATTAATAAC GTAAGGATTA GTTATGTTGG CATTATTAAT GCAAGAAGTA 301 GTTATAACAT GCACTACATA ATTCTATCTA CAAAAAATAT TTGTTTACAA AAAAAAAAAA 361 AAAAAA Predicted gene structure (within gDNA segment 1824 to 1): Exon 1 1087 1079 ( 9 n); cDNA 1 9 ( 9 n); score: 0.889 Intron 1 1078 999 ( 80 n); Pd: 0.971 (s: 0), Pa: 0.723 (s: 0.98) Exon 2 998 918 ( 81 n); cDNA 10 90 ( 81 n); score: 0.988 Intron 2 917 332 ( 586 n); Pd: 0.988 (s: 1.00), Pa: 0.898 (s: 1.00) Exon 3 331 69 ( 263 n); cDNA 91 353 ( 263 n); score: 0.996 PPA cDNA 354 366 MATCH C06HBa0158P14.1-9- SGN-E230327- 0.994 353 0.964 C PGS_C06HBa0158P14.1-9-_SGN-E230327- (1087 1079,998 918,331 69) Alignment (genomic DNA sequence = upper lines): ATATGGAGGG TCTGTACATA GCTTTACGTA TTCATCTGTT TTACACGTCG TGAATGATGT 1028 ||||| ||| ATATGAAGG. .......... .......... .......... .......... .......... 9 TCTTATAGTT GCTAGTGTTT TGTTCCCAGG TCTGATTTTC ATGATTACCA TCATCGACTG 968 | |||||||||| || ||||||| |||||||||| .......... .......... .........G TCTGATTTTC ATAATTACCA TCATCGACTG 40 CTCTACACAA AGTCTGGAAA CTACTCATCG ACTTTCGTTT ACATGGACTG GTAAGGCTTC 908 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCTACACAA AGTCTGGAAA CTACTCATCG ACTTTCGTTT ACATGGACTG .......... 90 CATACATTGC CTTTTACACT AGTACTCTAG TAAACAGATA ACTCTGTACA TATTCAAAGC 848 .......... .......... .......... .......... .......... .......... 90 TACTAGGTTC GGCTGATCCT GTGACTAATA CTCTAGCTCC GCCCCTAGTT CCAAAACTTA 788 .......... .......... .......... .......... .......... .......... 90 TACATCTCCC TGCTTATCCT CAAGACAACT TGGTCTTTTG CAGAATTTCT CTTAGCAATT 728 .......... .......... .......... .......... .......... .......... 90 CTTGATCGTT GCTGTTGTTT TTGTTGTTGT TCTGCTTCCC AACTAATATT GACTGTGGGA 668 .......... .......... .......... .......... .......... .......... 90 GTTCAAAATT TTAGTATATA TATCTCTTTC AGAAGTTTTT TTTACCTACA CTACTAGAAA 608 .......... .......... .......... .......... .......... .......... 90 ATATAGAATT AGTGACGGAA ATTGTCGATA ATCCCTAATT AATCTGTAGC TAAAAAGCTC 548 .......... .......... .......... .......... .......... .......... 90 GATAACTAAT CATAGCTTAA TAGGATTAGC ATGCAATTTG CTGTTTAGCT ATGAAATTTT 488 .......... .......... .......... .......... .......... .......... 90 GTCCATCACT AATTCCTTGT ATTCTAGCAA TGCTGTATAC GTACTATTAC TTTCTGTATA 428 .......... .......... .......... .......... .......... .......... 90 CACTGTATAA TTTTTTGATG AAATGTGTTC GAGTGACCGC TCTTGGATCG ATATGTCGCT 368 .......... .......... .......... .......... .......... .......... 90 AGGCCGCTAA GACCTATATC TCTCTTTTTT ATTTAGGTTA TTTGGTACTG ATAAGGGTTA 308 |||| |||||||||| |||||||||| .......... .......... .......... ......GTTA TTTGGTACTG ATAAGGGTTA 114 CAGAAAGTTG AAGATGCTGA AGGAGCAAGA GGGCAAAGCA ATGTAAACAA GATGGGAAAG 248 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAGAAAGTTG AAGATGCTGA AGGAGCAAGA GGGCAAAGCA ATGTAAACAA GATGGGAAAG 174 TAGAGGGGGA ATAAAATTAC ATGTTTGTTT GAGTGTATAA GAAATAGTAC TGAACAGATT 188 || ||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAAAGGGGGA ATAAAATTAC ATGTTTGTTT GAGTGTATAA GAAATAGTAC TGAACAGATT 234 CTATTAGTAA TGATGAGATT AATAACGTAA GGATTAGTTA TGTTGGCATT ATTAATGCAA 128 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTATTAGTAA TGATGAGATT AATAACGTAA GGATTAGTTA TGTTGGCATT ATTAATGCAA 294 GAAGTAGTTA TAACATGCAC TACATAATTC TATCTACAAA AAATATTTGT TTACAAAAA 69 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| GAAGTAGTTA TAACATGCAC TACATAATTC TATCTACAAA AAATATTTGT TTACAAAAA 353 hqPGS_C06HBa0158P14.1-9-_SGN-E230327- (1087 1079,998 918,331 69) ******************************************************************************** EST sequence 1 -strand 441 n (File: SGN-E223713-) 1 ACATTATATC TATGGATCTC TCTTAGAATC CTCGAGACAG TCGAGGCACA TTCTGGATAC 61 CATTTCCCCT GGAGCCCGTC AAACTTCTTG CCATTATATG GAGGGTCTGA TTTTCATGAT 121 TACCATCATC GACTGCTCTA CACAAAGTCT GGAAACTACT CATCGACTTT CGTTTACATG 181 GACTGGTTAT TTGGTACTGA TAAGGGTTAC AGAAAGTTGA AGATGCTGAA GGAGCAAGAG 241 GGCAAAGCAA TGTAAACAAG ATGGGAAAGT AGAGGGGGAA TAAAATTACA TGTTTGTTTG 301 AGTGTATAAG AAATAGTACT GAACAGATTC TATTAGTAAT GATGAGATTA ATAACGTAAG 361 GATTAGTTAT GTTGGCATTA TTAATGCAAG AAGTAGTTAT AACATGCACT ACATAATTCT 421 ATCTAAAAAA AAAAAAAAAA A Predicted gene structure (within gDNA segment 1792 to 1): Exon 1 1182 1079 ( 104 n); cDNA 1 104 ( 104 n); score: 1.000 Intron 1 1078 999 ( 80 n); Pd: 0.971 (s: 1.00), Pa: 0.723 (s: 1.00) Exon 2 998 918 ( 81 n); cDNA 105 185 ( 81 n); score: 1.000 Intron 2 917 332 ( 586 n); Pd: 0.988 (s: 1.00), Pa: 0.898 (s: 1.00) Exon 3 331 86 ( 246 n); cDNA 186 431 ( 246 n); score: 0.996 PPA cDNA 432 441 MATCH C06HBa0158P14.1-9- SGN-E223713- 0.998 431 0.977 C PGS_C06HBa0158P14.1-9-_SGN-E223713- (1182 1079,998 918,331 86) Alignment (genomic DNA sequence = upper lines): ACATTATATC TATGGATCTC TCTTAGAATC CTCGAGACAG TCGAGGCACA TTCTGGATAC 1123 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACATTATATC TATGGATCTC TCTTAGAATC CTCGAGACAG TCGAGGCACA TTCTGGATAC 60 CATTTCCCCT GGAGCCCGTC AAACTTCTTG CCATTATATG GAGGGTCTGT ACATAGCTTT 1063 |||||||||| |||||||||| |||||||||| |||||||||| |||| CATTTCCCCT GGAGCCCGTC AAACTTCTTG CCATTATATG GAGG...... .......... 104 ACGTATTCAT CTGTTTTACA CGTCGTGAAT GATGTTCTTA TAGTTGCTAG TGTTTTGTTC 1003 .......... .......... .......... .......... .......... .......... 104 CCAGGTCTGA TTTTCATGAT TACCATCATC GACTGCTCTA CACAAAGTCT GGAAACTACT 943 |||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ....GTCTGA TTTTCATGAT TACCATCATC GACTGCTCTA CACAAAGTCT GGAAACTACT 160 CATCGACTTT CGTTTACATG GACTGGTAAG GCTTCCATAC ATTGCCTTTT ACACTAGTAC 883 |||||||||| |||||||||| ||||| CATCGACTTT CGTTTACATG GACTG..... .......... .......... .......... 185 TCTAGTAAAC AGATAACTCT GTACATATTC AAAGCTACTA GGTTCGGCTG ATCCTGTGAC 823 .......... .......... .......... .......... .......... .......... 185 TAATACTCTA GCTCCGCCCC TAGTTCCAAA ACTTATACAT CTCCCTGCTT ATCCTCAAGA 763 .......... .......... .......... .......... .......... .......... 185 CAACTTGGTC TTTTGCAGAA TTTCTCTTAG CAATTCTTGA TCGTTGCTGT TGTTTTTGTT 703 .......... .......... .......... .......... .......... .......... 185 GTTGTTCTGC TTCCCAACTA ATATTGACTG TGGGAGTTCA AAATTTTAGT ATATATATCT 643 .......... .......... .......... .......... .......... .......... 185 CTTTCAGAAG TTTTTTTTAC CTACACTACT AGAAAATATA GAATTAGTGA CGGAAATTGT 583 .......... .......... .......... .......... .......... .......... 185 CGATAATCCC TAATTAATCT GTAGCTAAAA AGCTCGATAA CTAATCATAG CTTAATAGGA 523 .......... .......... .......... .......... .......... .......... 185 TTAGCATGCA ATTTGCTGTT TAGCTATGAA ATTTTGTCCA TCACTAATTC CTTGTATTCT 463 .......... .......... .......... .......... .......... .......... 185 AGCAATGCTG TATACGTACT ATTACTTTCT GTATACACTG TATAATTTTT TGATGAAATG 403 .......... .......... .......... .......... .......... .......... 185 TGTTCGAGTG ACCGCTCTTG GATCGATATG TCGCTAGGCC GCTAAGACCT ATATCTCTCT 343 .......... .......... .......... .......... .......... .......... 185 TTTTTATTTA GGTTATTTGG TACTGATAAG GGTTACAGAA AGTTGAAGAT GCTGAAGGAG 283 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| .......... .GTTATTTGG TACTGATAAG GGTTACAGAA AGTTGAAGAT GCTGAAGGAG 234 CAAGAGGGCA AAGCAATGTA AACAAGATGG GAAAGTAGAG GGGGAATAAA ATTACATGTT 223 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAGAGGGCA AAGCAATGTA AACAAGATGG GAAAGTAGAG GGGGAATAAA ATTACATGTT 294 TGTTTGAGTG TATAAGAAAT AGTACTGAAC AGATTCTATT AGTAATGATG AGATTAATAA 163 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTTTGAGTG TATAAGAAAT AGTACTGAAC AGATTCTATT AGTAATGATG AGATTAATAA 354 CGTAAGGATT AGTTATGTTG GCATTATTAA TGCAAGAAGT AGTTATAACA TGCACTACAT 103 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGTAAGGATT AGTTATGTTG GCATTATTAA TGCAAGAAGT AGTTATAACA TGCACTACAT 414 AATTCTATCT ACAAAAA 86 |||||||||| | ||||| AATTCTATCT AAAAAAA 431 hqPGS_C06HBa0158P14.1-9-_SGN-E223713- (1182 1079,998 918,331 86) ******************************************************************************** EST sequence 2 -strand 430 n (File: SGN-E224081-) 1 ATGGATCTCT CTTAGAATCC TCGAGACAGT CGAGGCACAT TCTGGATACC ATTTCCCCTG 61 GAGCCCGTCA AACTTCTTGC CATTATATGG AGGGTCTGAT TTTCATGATT ACCATCATCG 121 ACTGCTCTAC ACAAAGTCTG GAAACTACTC ATCGACTTTC GTTTACATGG ACTGGTTATT 181 TGGTACTGAT AAGGGTTACA GAAAGTTGAA GATGCTGAAG GAGCAAGAGG GCAAAGCAAT 241 GTAAACAAGA TGGGAAAGTA GAGGGGGAAT AAAATTACAT GTTTGTTTGA GTGTATAAGA 301 AATAGTACTG AACAGATTCT ATTAGTAATG ATGAGATTAA TAACGTAAGG ATTAGTTATG 361 TTGGCATTAT TAATGCAAGA AGTAGTTATA ACATGCACTA CATAATTCTA TCTAAAAAAA 421 AAAAAAAAAA Predicted gene structure (within gDNA segment 1781 to 1): Exon 1 1171 1079 ( 93 n); cDNA 1 93 ( 93 n); score: 1.000 Intron 1 1078 999 ( 80 n); Pd: 0.971 (s: 1.00), Pa: 0.723 (s: 1.00) Exon 2 998 918 ( 81 n); cDNA 94 174 ( 81 n); score: 1.000 Intron 2 917 332 ( 586 n); Pd: 0.988 (s: 1.00), Pa: 0.898 (s: 1.00) Exon 3 331 86 ( 246 n); cDNA 175 420 ( 246 n); score: 0.996 PPA cDNA 421 430 MATCH C06HBa0158P14.1-9- SGN-E224081- 0.998 420 0.977 C PGS_C06HBa0158P14.1-9-_SGN-E224081- (1171 1079,998 918,331 86) Alignment (genomic DNA sequence = upper lines): ATGGATCTCT CTTAGAATCC TCGAGACAGT CGAGGCACAT TCTGGATACC ATTTCCCCTG 1112 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGGATCTCT CTTAGAATCC TCGAGACAGT CGAGGCACAT TCTGGATACC ATTTCCCCTG 60 GAGCCCGTCA AACTTCTTGC CATTATATGG AGGGTCTGTA CATAGCTTTA CGTATTCATC 1052 |||||||||| |||||||||| |||||||||| ||| GAGCCCGTCA AACTTCTTGC CATTATATGG AGG....... .......... .......... 93 TGTTTTACAC GTCGTGAATG ATGTTCTTAT AGTTGCTAGT GTTTTGTTCC CAGGTCTGAT 992 ||||||| .......... .......... .......... .......... .......... ...GTCTGAT 100 TTTCATGATT ACCATCATCG ACTGCTCTAC ACAAAGTCTG GAAACTACTC ATCGACTTTC 932 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTCATGATT ACCATCATCG ACTGCTCTAC ACAAAGTCTG GAAACTACTC ATCGACTTTC 160 GTTTACATGG ACTGGTAAGG CTTCCATACA TTGCCTTTTA CACTAGTACT CTAGTAAACA 872 |||||||||| |||| GTTTACATGG ACTG...... .......... .......... .......... .......... 174 GATAACTCTG TACATATTCA AAGCTACTAG GTTCGGCTGA TCCTGTGACT AATACTCTAG 812 .......... .......... .......... .......... .......... .......... 174 CTCCGCCCCT AGTTCCAAAA CTTATACATC TCCCTGCTTA TCCTCAAGAC AACTTGGTCT 752 .......... .......... .......... .......... .......... .......... 174 TTTGCAGAAT TTCTCTTAGC AATTCTTGAT CGTTGCTGTT GTTTTTGTTG TTGTTCTGCT 692 .......... .......... .......... .......... .......... .......... 174 TCCCAACTAA TATTGACTGT GGGAGTTCAA AATTTTAGTA TATATATCTC TTTCAGAAGT 632 .......... .......... .......... .......... .......... .......... 174 TTTTTTTACC TACACTACTA GAAAATATAG AATTAGTGAC GGAAATTGTC GATAATCCCT 572 .......... .......... .......... .......... .......... .......... 174 AATTAATCTG TAGCTAAAAA GCTCGATAAC TAATCATAGC TTAATAGGAT TAGCATGCAA 512 .......... .......... .......... .......... .......... .......... 174 TTTGCTGTTT AGCTATGAAA TTTTGTCCAT CACTAATTCC TTGTATTCTA GCAATGCTGT 452 .......... .......... .......... .......... .......... .......... 174 ATACGTACTA TTACTTTCTG TATACACTGT ATAATTTTTT GATGAAATGT GTTCGAGTGA 392 .......... .......... .......... .......... .......... .......... 174 CCGCTCTTGG ATCGATATGT CGCTAGGCCG CTAAGACCTA TATCTCTCTT TTTTATTTAG 332 .......... .......... .......... .......... .......... .......... 174 GTTATTTGGT ACTGATAAGG GTTACAGAAA GTTGAAGATG CTGAAGGAGC AAGAGGGCAA 272 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTATTTGGT ACTGATAAGG GTTACAGAAA GTTGAAGATG CTGAAGGAGC AAGAGGGCAA 234 AGCAATGTAA ACAAGATGGG AAAGTAGAGG GGGAATAAAA TTACATGTTT GTTTGAGTGT 212 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCAATGTAA ACAAGATGGG AAAGTAGAGG GGGAATAAAA TTACATGTTT GTTTGAGTGT 294 ATAAGAAATA GTACTGAACA GATTCTATTA GTAATGATGA GATTAATAAC GTAAGGATTA 152 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATAAGAAATA GTACTGAACA GATTCTATTA GTAATGATGA GATTAATAAC GTAAGGATTA 354 GTTATGTTGG CATTATTAAT GCAAGAAGTA GTTATAACAT GCACTACATA ATTCTATCTA 92 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTATGTTGG CATTATTAAT GCAAGAAGTA GTTATAACAT GCACTACATA ATTCTATCTA 414 CAAAAA 86 ||||| AAAAAA 420 hqPGS_C06HBa0158P14.1-9-_SGN-E224081- (1171 1079,998 918,331 86) ******************************************************************************** EST sequence 7 +strand 441 n (File: SGN-E285528+) 1 TTTTCTGCAG GAAAGTGGTT TCAACCCAAG TTTTATTCTA TTTCATCTTG GAGGATTTCG 61 TATTTTACTG GGGACACAGA GTTTTACATA CGAAATGGCT CTACAAGCAC GTCCACAGTG 121 TCCATCATGA GTACGCGACA CCATTTGGTT AGACATCTGA GTATGCTCAC CCTGCTGAAA 181 TTCTCTTCCT TGGATTTGCT ACGGTCATTG GTCCTGCAAT CACCGGGCCA CATTTGATAA 241 CATTATATCT ATGGATCTCT CTTAGAATCC TCGAGACAGT CGAGGCACAT TCTGGATACC 301 ATTTCCCCTG GAGCCCGTCA AACTTCTTGC CATTATATGG AGGGTCTGAT TTTCATGATT 361 ACCATCATCG ACTGCTCTAC ACAAAGTCTG GAAACTACTC ATCGACTGTC GTTTACATGG 421 ACTGGTTATT TGGTACTGAT A Predicted gene structure (within gDNA segment 2100 to 156): Exon 1 1500 1371 ( 130 n); cDNA 1 130 ( 130 n); score: 1.000 Intron 1 1370 1292 ( 79 n); Pd: 0.966 (s: 1.00), Pa: 0.999 (s: 0.98) Exon 2 1291 1079 ( 213 n); cDNA 131 343 ( 213 n); score: 0.995 Intron 2 1078 999 ( 80 n); Pd: 0.971 (s: 1.00), Pa: 0.723 (s: 1.00) Exon 3 998 918 ( 81 n); cDNA 344 424 ( 81 n); score: 0.988 Intron 3 917 332 ( 586 n); Pd: 0.988 (s: 0.98), Pa: 0.898 (s: 0) Exon 4 331 315 ( 17 n); cDNA 425 441 ( 17 n); score: 1.000 MATCH C06HBa0158P14.1-9- SGN-E285528+ 0.995 441 1.000 C PGS_C06HBa0158P14.1-9-_SGN-E285528+ (1500 1371,1291 1079,998 918,331 315) Alignment (genomic DNA sequence = upper lines): TTTTCTGCAG GAAAGTGGTT TCAACCCAAG TTTTATTCTA TTTCATCTTG GAGGATTTCG 1441 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTTCTGCAG GAAAGTGGTT TCAACCCAAG TTTTATTCTA TTTCATCTTG GAGGATTTCG 60 TATTTTACTG GGGACACAGA GTTTTACATA CGAAATGGCT CTACAAGCAC GTCCACAGTG 1381 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATTTTACTG GGGACACAGA GTTTTACATA CGAAATGGCT CTACAAGCAC GTCCACAGTG 120 TCCATCATGA GTATGTGAAC TACTTAAATT CTTCGAGTTT CACTTTTTCT CCCCATGAAA 1321 |||||||||| TCCATCATGA .......... .......... .......... .......... .......... 130 TTCACAACTT TCTGCTTTTG TTACACTAGG TACGCGACAC CATTTGGTTT GACATCTGAG 1261 | |||||||||| ||||||||| |||||||||| .......... .......... .........G TACGCGACAC CATTTGGTTA GACATCTGAG 161 TATGCTCACC CTGCTGAAAT TCTCTTCCTT GGATTTGCTA CGGTCATTGG TCCTGCAATC 1201 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATGCTCACC CTGCTGAAAT TCTCTTCCTT GGATTTGCTA CGGTCATTGG TCCTGCAATC 221 ACCGGGCCAC ATTTGATAAC ATTATATCTA TGGATCTCTC TTAGAATCCT CGAGACAGTC 1141 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACCGGGCCAC ATTTGATAAC ATTATATCTA TGGATCTCTC TTAGAATCCT CGAGACAGTC 281 GAGGCACATT CTGGATACCA TTTCCCCTGG AGCCCGTCAA ACTTCTTGCC ATTATATGGA 1081 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGGCACATT CTGGATACCA TTTCCCCTGG AGCCCGTCAA ACTTCTTGCC ATTATATGGA 341 GGGTCTGTAC ATAGCTTTAC GTATTCATCT GTTTTACACG TCGTGAATGA TGTTCTTATA 1021 || GG........ .......... .......... .......... .......... .......... 343 GTTGCTAGTG TTTTGTTCCC AGGTCTGATT TTCATGATTA CCATCATCGA CTGCTCTACA 961 |||||||| |||||||||| |||||||||| |||||||||| .......... .......... ..GTCTGATT TTCATGATTA CCATCATCGA CTGCTCTACA 381 CAAAGTCTGG AAACTACTCA TCGACTTTCG TTTACATGGA CTGGTAAGGC TTCCATACAT 901 |||||||||| |||||||||| |||||| ||| |||||||||| ||| CAAAGTCTGG AAACTACTCA TCGACTGTCG TTTACATGGA CTG....... .......... 424 TGCCTTTTAC ACTAGTACTC TAGTAAACAG ATAACTCTGT ACATATTCAA AGCTACTAGG 841 .......... .......... .......... .......... .......... .......... 424 TTCGGCTGAT CCTGTGACTA ATACTCTAGC TCCGCCCCTA GTTCCAAAAC TTATACATCT 781 .......... .......... .......... .......... .......... .......... 424 CCCTGCTTAT CCTCAAGACA ACTTGGTCTT TTGCAGAATT TCTCTTAGCA ATTCTTGATC 721 .......... .......... .......... .......... .......... .......... 424 GTTGCTGTTG TTTTTGTTGT TGTTCTGCTT CCCAACTAAT ATTGACTGTG GGAGTTCAAA 661 .......... .......... .......... .......... .......... .......... 424 ATTTTAGTAT ATATATCTCT TTCAGAAGTT TTTTTTACCT ACACTACTAG AAAATATAGA 601 .......... .......... .......... .......... .......... .......... 424 ATTAGTGACG GAAATTGTCG ATAATCCCTA ATTAATCTGT AGCTAAAAAG CTCGATAACT 541 .......... .......... .......... .......... .......... .......... 424 AATCATAGCT TAATAGGATT AGCATGCAAT TTGCTGTTTA GCTATGAAAT TTTGTCCATC 481 .......... .......... .......... .......... .......... .......... 424 ACTAATTCCT TGTATTCTAG CAATGCTGTA TACGTACTAT TACTTTCTGT ATACACTGTA 421 .......... .......... .......... .......... .......... .......... 424 TAATTTTTTG ATGAAATGTG TTCGAGTGAC CGCTCTTGGA TCGATATGTC GCTAGGCCGC 361 .......... .......... .......... .......... .......... .......... 424 TAAGACCTAT ATCTCTCTTT TTTATTTAGG TTATTTGGTA CTGATA 315 | |||||||||| |||||| .......... .......... .........G TTATTTGGTA CTGATA 441 hqPGS_C06HBa0158P14.1-9-_SGN-E285528+ (1500 1371,1291 1079,998 918) ******************************************************************************** EST sequence 6 +strand 423 n (File: SGN-E285524+) 1 TTTTCTGCAG GAAAGTGGTT TCAACCCAAG TTTTATTCTA TTTCATCTTG GAGGATTTCG 61 TATTTTACTG GGGACACAGA GTTTTACATA CGAAATGGCT CTACAAGCAC GTCCACAGTG 121 TCCATCATGA GTACGCGACA CCATTTGGTT TGACATCTGA GTATGCTCAC CCTGCTGAAA 181 TTCTCTTCCT TGGATTTGCT ACGGTCATTG GTCCTGCAAT CACCGGGCCA CATTTGATAA 241 CATTATATCT ATGGATCTCT CTTAGAATCC TCGAGACAGT CGAGGCACAT TCTGGATACC 301 ATTTCCCCTG GAGCCCGTCA AACTTCTTGC CATTATATGG AGGGTCTGAT TTTCATGATT 361 ACCATCATCG ACTGCTCTAC ACAAAGTCTG GAAACTACTC ATCGACTTTC GTTTACATGG 421 ACT Predicted gene structure (within gDNA segment 2100 to 309): Exon 1 1500 1371 ( 130 n); cDNA 1 130 ( 130 n); score: 1.000 Intron 1 1370 1292 ( 79 n); Pd: 0.966 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 2 1291 1079 ( 213 n); cDNA 131 343 ( 213 n); score: 1.000 Intron 2 1078 999 ( 80 n); Pd: 0.971 (s: 1.00), Pa: 0.723 (s: 1.00) Exon 3 998 919 ( 80 n); cDNA 344 423 ( 80 n); score: 1.000 MATCH C06HBa0158P14.1-9- SGN-E285524+ 1.000 423 1.000 C PGS_C06HBa0158P14.1-9-_SGN-E285524+ (1500 1371,1291 1079,998 919) Alignment (genomic DNA sequence = upper lines): TTTTCTGCAG GAAAGTGGTT TCAACCCAAG TTTTATTCTA TTTCATCTTG GAGGATTTCG 1441 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTTCTGCAG GAAAGTGGTT TCAACCCAAG TTTTATTCTA TTTCATCTTG GAGGATTTCG 60 TATTTTACTG GGGACACAGA GTTTTACATA CGAAATGGCT CTACAAGCAC GTCCACAGTG 1381 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATTTTACTG GGGACACAGA GTTTTACATA CGAAATGGCT CTACAAGCAC GTCCACAGTG 120 TCCATCATGA GTATGTGAAC TACTTAAATT CTTCGAGTTT CACTTTTTCT CCCCATGAAA 1321 |||||||||| TCCATCATGA .......... .......... .......... .......... .......... 130 TTCACAACTT TCTGCTTTTG TTACACTAGG TACGCGACAC CATTTGGTTT GACATCTGAG 1261 | |||||||||| |||||||||| |||||||||| .......... .......... .........G TACGCGACAC CATTTGGTTT GACATCTGAG 161 TATGCTCACC CTGCTGAAAT TCTCTTCCTT GGATTTGCTA CGGTCATTGG TCCTGCAATC 1201 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATGCTCACC CTGCTGAAAT TCTCTTCCTT GGATTTGCTA CGGTCATTGG TCCTGCAATC 221 ACCGGGCCAC ATTTGATAAC ATTATATCTA TGGATCTCTC TTAGAATCCT CGAGACAGTC 1141 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACCGGGCCAC ATTTGATAAC ATTATATCTA TGGATCTCTC TTAGAATCCT CGAGACAGTC 281 GAGGCACATT CTGGATACCA TTTCCCCTGG AGCCCGTCAA ACTTCTTGCC ATTATATGGA 1081 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGGCACATT CTGGATACCA TTTCCCCTGG AGCCCGTCAA ACTTCTTGCC ATTATATGGA 341 GGGTCTGTAC ATAGCTTTAC GTATTCATCT GTTTTACACG TCGTGAATGA TGTTCTTATA 1021 || GG........ .......... .......... .......... .......... .......... 343 GTTGCTAGTG TTTTGTTCCC AGGTCTGATT TTCATGATTA CCATCATCGA CTGCTCTACA 961 |||||||| |||||||||| |||||||||| |||||||||| .......... .......... ..GTCTGATT TTCATGATTA CCATCATCGA CTGCTCTACA 381 CAAAGTCTGG AAACTACTCA TCGACTTTCG TTTACATGGA CT 919 |||||||||| |||||||||| |||||||||| |||||||||| || CAAAGTCTGG AAACTACTCA TCGACTTTCG TTTACATGGA CT 423 hqPGS_C06HBa0158P14.1-9-_SGN-E285524+ (1500 1371,1291 1079,998 919) ******************************************************************************** EST sequence 10 +strand 558 n (File: SGN-E322919+) 1 GTGGTTTGGC AAGTACAAAA TTCAGAAAAA GACCAACACC CCGGAAGCTC AGCAGAAATG 61 TATTACTCGT CTGCTGATAT TTCATTTTTG TGTTAATCTT CCAATCCTGA TAGTTACGTA 121 TCCGCTCTTT AAATTCATGG GGATGCGATC TACTCTTCCA TTGCCATCCT GGAAAGTGGT 181 TTCAACCCAA GTTTTATTCT ATTTCATCTT GGAGGATTTC GTATTTTACT GGGGACACAG 241 AGTTTTACAT ACGAAATGGC TCTACAAGCA CGTCCACAGT GTCCATCATG AGTACGCGAC 301 ACCATTTGGT TTGACATCTG AGTATGCTCA CCCTGCTGAA ATTCTCTTCC TTGGATTTGC 361 TACGGTCATT GGTCCTGCAA TCACCGGGCC ACATTTGATA ACATTATATC TATGGATCTC 421 TCTTAGAATC CTCGAGACAG TCGAGGCACA TTCTGGATAC CATTTCCCCT GGAGCCCGTC 481 AAACTTCTTG CCATTATATG GANGGTCTGA TTTTCATGAT TACCATCATC GACTGCTCTA 541 CACAAAGTCT GGAAACTA Predicted gene structure (within gDNA segment 3126 to 335): Exon 1 2485 2461 ( 25 n); cDNA 1 25 ( 25 n); score: 1.000 Intron 1 2460 2304 ( 157 n); Pd: 0.874 (s: 0), Pa: 0.996 (s: 1.00) Exon 2 2303 2158 ( 146 n); cDNA 26 171 ( 146 n); score: 1.000 Intron 2 2157 1491 ( 667 n); Pd: 0.991 (s: 1.00), Pa: 0.975 (s: 1.00) Exon 3 1490 1371 ( 120 n); cDNA 172 291 ( 120 n); score: 1.000 Intron 3 1370 1292 ( 79 n); Pd: 0.966 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 4 1291 1079 ( 213 n); cDNA 292 504 ( 213 n); score: 0.995 Intron 4 1078 999 ( 80 n); Pd: 0.971 (s: 0.98), Pa: 0.723 (s: 1.00) Exon 5 998 945 ( 54 n); cDNA 505 558 ( 54 n); score: 1.000 MATCH C06HBa0158P14.1-9- SGN-E322919+ 0.998 558 1.000 C PGS_C06HBa0158P14.1-9-_SGN-E322919+ (2485 2461,2303 2158,1490 1371,1291 1079,998 945) Alignment (genomic DNA sequence = upper lines): GTGGTTTGGC AAGTACAAAA TTCAGGTAAT GGAATGATGT TTCTTGTTCA AAATGATCCC 2426 |||||||||| |||||||||| ||||| GTGGTTTGGC AAGTACAAAA TTCAG..... .......... .......... .......... 25 AAACATCAAC GATATTCGAC TCAAGACTAG TACTAGTACT CGTGCACGAG TACGTAGTTC 2366 .......... .......... .......... .......... .......... .......... 25 ATTCCTATCA TTATTCACAT GAATTTTCAT TTTGTTGCAC TGTCGACCTA TTTGTGTTGC 2306 .......... .......... .......... .......... .......... .......... 25 AGAAAAAGAC CAACACCCCG GAAGCTCAGC AGAAATGTAT TACTCGTCTG CTGATATTTC 2246 |||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ..AAAAAGAC CAACACCCCG GAAGCTCAGC AGAAATGTAT TACTCGTCTG CTGATATTTC 83 ATTTTTGTGT TAATCTTCCA ATCCTGATAG TTACGTATCC GCTCTTTAAA TTCATGGGGA 2186 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTTTTGTGT TAATCTTCCA ATCCTGATAG TTACGTATCC GCTCTTTAAA TTCATGGGGA 143 TGCGATCTAC TCTTCCATTG CCATCCTGGT ATTTTCTGCT TCTCTGTATA CTAAGCTTTA 2126 |||||||||| |||||||||| |||||||| TGCGATCTAC TCTTCCATTG CCATCCTG.. .......... .......... .......... 171 CTTGTGTGAT TGCATACCTT TTACTGATCT TGCAATCTTC GTTTCTTTTG TTTTGCTTTC 2066 .......... .......... .......... .......... .......... .......... 171 TACTTCTTTA CGGTTCTCTT TTTAGAATCA ATAACCATTT TGTTAGCCTG ATGCATTGCA 2006 .......... .......... .......... .......... .......... .......... 171 TGTTTAGGCT ATGGTTATCA AAATAGGCTA ACTGAATGGG AGAAGTAGTA CAACAAGATT 1946 .......... .......... .......... .......... .......... .......... 171 ATATGTACAG TTGTTAGATT GACAACGTTA TGCAGAAGTG AATGTTGTGA ACCTCTATGG 1886 .......... .......... .......... .......... .......... .......... 171 TCCAACATAT TCGATAGAAG GTGCACGTAG CCTCACATAG AGAATAAGTT TTCTCTGACT 1826 .......... .......... .......... .......... .......... .......... 171 CATGTCCTAC AGGGACATCG AGATCAGATC ACTGGTATAT AGATGGGCAA AATCATGGTG 1766 .......... .......... .......... .......... .......... .......... 171 GTTGAACAGG AGAAGGTAGA TCTAAAATCA TACGGAATGA AGTTGTCTTG AAAGACCTAT 1706 .......... .......... .......... .......... .......... .......... 171 CATCCCTTTA GATTTCATGC AAACATTGAG AAACATATGA AACAAACAAC GGAAAAGAAC 1646 .......... .......... .......... .......... .......... .......... 171 ATACCTGTAT TGGTGATACC AATTAATTGA TAAATGAGGA TTCATGCAAT CGACTCCAAC 1586 .......... .......... .......... .......... .......... .......... 171 TAGCTTGGAA TTGAGGCGTA GTAGTTGTAT AATTTCGCAA GTATCTTTTC TGCTTATTGA 1526 .......... .......... .......... .......... .......... .......... 171 TCAGAGTAAA TTGCAAATAC TTCTTTTTTC TGCAGGAAAG TGGTTTCAAC CCAAGTTTTA 1466 ||||| |||||||||| |||||||||| .......... .......... .......... .....GAAAG TGGTTTCAAC CCAAGTTTTA 196 TTCTATTTCA TCTTGGAGGA TTTCGTATTT TACTGGGGAC ACAGAGTTTT ACATACGAAA 1406 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCTATTTCA TCTTGGAGGA TTTCGTATTT TACTGGGGAC ACAGAGTTTT ACATACGAAA 256 TGGCTCTACA AGCACGTCCA CAGTGTCCAT CATGAGTATG TGAACTACTT AAATTCTTCG 1346 |||||||||| |||||||||| |||||||||| ||||| TGGCTCTACA AGCACGTCCA CAGTGTCCAT CATGA..... .......... .......... 291 AGTTTCACTT TTTCTCCCCA TGAAATTCAC AACTTTCTGC TTTTGTTACA CTAGGTACGC 1286 |||||| .......... .......... .......... .......... .......... ....GTACGC 297 GACACCATTT GGTTTGACAT CTGAGTATGC TCACCCTGCT GAAATTCTCT TCCTTGGATT 1226 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GACACCATTT GGTTTGACAT CTGAGTATGC TCACCCTGCT GAAATTCTCT TCCTTGGATT 357 TGCTACGGTC ATTGGTCCTG CAATCACCGG GCCACATTTG ATAACATTAT ATCTATGGAT 1166 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGCTACGGTC ATTGGTCCTG CAATCACCGG GCCACATTTG ATAACATTAT ATCTATGGAT 417 CTCTCTTAGA ATCCTCGAGA CAGTCGAGGC ACATTCTGGA TACCATTTCC CCTGGAGCCC 1106 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCTCTTAGA ATCCTCGAGA CAGTCGAGGC ACATTCTGGA TACCATTTCC CCTGGAGCCC 477 GTCAAACTTC TTGCCATTAT ATGGAGGGTC TGTACATAGC TTTACGTATT CATCTGTTTT 1046 |||||||||| |||||||||| ||||| | GTCAAACTTC TTGCCATTAT ATGGANG... .......... .......... .......... 504 ACACGTCGTG AATGATGTTC TTATAGTTGC TAGTGTTTTG TTCCCAGGTC TGATTTTCAT 986 ||| |||||||||| .......... .......... .......... .......... .......GTC TGATTTTCAT 517 GATTACCATC ATCGACTGCT CTACACAAAG TCTGGAAACT A 945 |||||||||| |||||||||| |||||||||| |||||||||| | GATTACCATC ATCGACTGCT CTACACAAAG TCTGGAAACT A 558 hqPGS_C06HBa0158P14.1-9-_SGN-E322919+ (2485 2461,2303 2158,1490 1371,1291 1079,998 945) ******************************************************************************** EST sequence 13 +strand 625 n (File: SGN-E347615+) 1 TGATCGAATC TGCTTGGGCG TTTCTTCTTG CAAATTTTAG TGATTTCCAA TTGACTTCTC 61 TTGGAGGTTT CATTGTTCAT GAGAGCGCTT TCTTCTTGTC TGGAATCCCT TTCATCCTTT 121 TCGAAAAGGC AGGGTGGTTT GGCAAGTACA AAATTCAGAA AAAGACCAAC ACCCCGGAAG 181 CTCAGCAGAA ATGTATTACT CGTCTGCTGA TATTTCATTT TTGTGTTAAT CTTCCAATCC 241 TGATAGTTAC GTATCCGCTC TTTAAATTCA TGGGGATGCG ATCTACTCTT CCATTGCCAT 301 CCTGGAAAGT GGTTTCAACC CAAGTTTTAT TCTATTTCAT CTTGGAGGAT TTCGTATTTT 361 ACTGGGGACA CAGAGTTTTA CATACGAAAT GGCTCTACAA GCACGTCCAC AGTGTCCATC 421 ATGAGTACGC GACACCATTT GGTTTGACAT CTGAGTATGC TCACCCTGCT GAAATTCTCT 481 TCCTTGGATT TGCTACGGTC ATTGGTCCTG CAATCACCGG GCCACATTTG ATAACATTAT 541 ATCTATGGAT CTCTCTTAGA ATCCTCGAGA CAGTCGAGGC ACATTCTGGA TACCATTTCC 601 CCTGNAGCCC GTCAAACTTC TTGCC Predicted gene structure (within gDNA segment 3389 to 481): Exon 1 2598 2461 ( 138 n); cDNA 21 158 ( 138 n); score: 1.000 Intron 1 2460 2304 ( 157 n); Pd: 0.874 (s: 1.00), Pa: 0.996 (s: 1.00) Exon 2 2303 2158 ( 146 n); cDNA 159 304 ( 146 n); score: 1.000 Intron 2 2157 1491 ( 667 n); Pd: 0.991 (s: 1.00), Pa: 0.975 (s: 1.00) Exon 3 1490 1371 ( 120 n); cDNA 305 424 ( 120 n); score: 1.000 Intron 3 1370 1292 ( 79 n); Pd: 0.966 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 4 1291 1091 ( 201 n); cDNA 425 625 ( 201 n); score: 0.995 MATCH C06HBa0158P14.1-9- SGN-E347615+ 0.998 605 0.968 C PGS_C06HBa0158P14.1-9-_SGN-E347615+ (2598 2461,2303 2158,1490 1371,1291 1091) Alignment (genomic DNA sequence = upper lines): TTTCTTCTTG CAAATTTTAG TGATTTCCAA TTGACTTCTC TTGGAGGTTT CATTGTTCAT 2539 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTCTTCTTG CAAATTTTAG TGATTTCCAA TTGACTTCTC TTGGAGGTTT CATTGTTCAT 80 GAGAGCGCTT TCTTCTTGTC TGGAATCCCT TTCATCCTTT TCGAAAAGGC AGGGTGGTTT 2479 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGAGCGCTT TCTTCTTGTC TGGAATCCCT TTCATCCTTT TCGAAAAGGC AGGGTGGTTT 140 GGCAAGTACA AAATTCAGGT AATGGAATGA TGTTTCTTGT TCAAAATGAT CCCAAACATC 2419 |||||||||| |||||||| GGCAAGTACA AAATTCAG.. .......... .......... .......... .......... 158 AACGATATTC GACTCAAGAC TAGTACTAGT ACTCGTGCAC GAGTACGTAG TTCATTCCTA 2359 .......... .......... .......... .......... .......... .......... 158 TCATTATTCA CATGAATTTT CATTTTGTTG CACTGTCGAC CTATTTGTGT TGCAGAAAAA 2299 ||||| .......... .......... .......... .......... .......... .....AAAAA 163 GACCAACACC CCGGAAGCTC AGCAGAAATG TATTACTCGT CTGCTGATAT TTCATTTTTG 2239 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GACCAACACC CCGGAAGCTC AGCAGAAATG TATTACTCGT CTGCTGATAT TTCATTTTTG 223 TGTTAATCTT CCAATCCTGA TAGTTACGTA TCCGCTCTTT AAATTCATGG GGATGCGATC 2179 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTTAATCTT CCAATCCTGA TAGTTACGTA TCCGCTCTTT AAATTCATGG GGATGCGATC 283 TACTCTTCCA TTGCCATCCT GGTATTTTCT GCTTCTCTGT ATACTAAGCT TTACTTGTGT 2119 |||||||||| |||||||||| | TACTCTTCCA TTGCCATCCT G......... .......... .......... .......... 304 GATTGCATAC CTTTTACTGA TCTTGCAATC TTCGTTTCTT TTGTTTTGCT TTCTACTTCT 2059 .......... .......... .......... .......... .......... .......... 304 TTACGGTTCT CTTTTTAGAA TCAATAACCA TTTTGTTAGC CTGATGCATT GCATGTTTAG 1999 .......... .......... .......... .......... .......... .......... 304 GCTATGGTTA TCAAAATAGG CTAACTGAAT GGGAGAAGTA GTACAACAAG ATTATATGTA 1939 .......... .......... .......... .......... .......... .......... 304 CAGTTGTTAG ATTGACAACG TTATGCAGAA GTGAATGTTG TGAACCTCTA TGGTCCAACA 1879 .......... .......... .......... .......... .......... .......... 304 TATTCGATAG AAGGTGCACG TAGCCTCACA TAGAGAATAA GTTTTCTCTG ACTCATGTCC 1819 .......... .......... .......... .......... .......... .......... 304 TACAGGGACA TCGAGATCAG ATCACTGGTA TATAGATGGG CAAAATCATG GTGGTTGAAC 1759 .......... .......... .......... .......... .......... .......... 304 AGGAGAAGGT AGATCTAAAA TCATACGGAA TGAAGTTGTC TTGAAAGACC TATCATCCCT 1699 .......... .......... .......... .......... .......... .......... 304 TTAGATTTCA TGCAAACATT GAGAAACATA TGAAACAAAC AACGGAAAAG AACATACCTG 1639 .......... .......... .......... .......... .......... .......... 304 TATTGGTGAT ACCAATTAAT TGATAAATGA GGATTCATGC AATCGACTCC AACTAGCTTG 1579 .......... .......... .......... .......... .......... .......... 304 GAATTGAGGC GTAGTAGTTG TATAATTTCG CAAGTATCTT TTCTGCTTAT TGATCAGAGT 1519 .......... .......... .......... .......... .......... .......... 304 AAATTGCAAA TACTTCTTTT TTCTGCAGGA AAGTGGTTTC AACCCAAGTT TTATTCTATT 1459 || |||||||||| |||||||||| |||||||||| .......... .......... ........GA AAGTGGTTTC AACCCAAGTT TTATTCTATT 336 TCATCTTGGA GGATTTCGTA TTTTACTGGG GACACAGAGT TTTACATACG AAATGGCTCT 1399 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCATCTTGGA GGATTTCGTA TTTTACTGGG GACACAGAGT TTTACATACG AAATGGCTCT 396 ACAAGCACGT CCACAGTGTC CATCATGAGT ATGTGAACTA CTTAAATTCT TCGAGTTTCA 1339 |||||||||| |||||||||| |||||||| ACAAGCACGT CCACAGTGTC CATCATGA.. .......... .......... .......... 424 CTTTTTCTCC CCATGAAATT CACAACTTTC TGCTTTTGTT ACACTAGGTA CGCGACACCA 1279 ||| |||||||||| .......... .......... .......... .......... .......GTA CGCGACACCA 437 TTTGGTTTGA CATCTGAGTA TGCTCACCCT GCTGAAATTC TCTTCCTTGG ATTTGCTACG 1219 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTGGTTTGA CATCTGAGTA TGCTCACCCT GCTGAAATTC TCTTCCTTGG ATTTGCTACG 497 GTCATTGGTC CTGCAATCAC CGGGCCACAT TTGATAACAT TATATCTATG GATCTCTCTT 1159 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTCATTGGTC CTGCAATCAC CGGGCCACAT TTGATAACAT TATATCTATG GATCTCTCTT 557 AGAATCCTCG AGACAGTCGA GGCACATTCT GGATACCATT TCCCCTGGAG CCCGTCAAAC 1099 |||||||||| |||||||||| |||||||||| |||||||||| ||||||| || |||||||||| AGAATCCTCG AGACAGTCGA GGCACATTCT GGATACCATT TCCCCTGNAG CCCGTCAAAC 617 TTCTTGCC 1091 |||||||| TTCTTGCC 625 hqPGS_C06HBa0158P14.1-9-_SGN-E347615+ (2598 2461,2303 2158,1490 1371,1291 1091) ******************************************************************************** EST sequence 8 +strand 578 n (File: SGN-E336940+) 1 TTTCTTCTTG CAAATTTTAG TGATTTCCAA TTGACTTCTC TTGGAGGTTT CATTGTTCAT 61 GAGAGCGCTT TCTTCTTGTC TGGAATCCCT TTCATCCTTT TCGAAAAGGC AGGGTGGTTT 121 GGCAAGTACA AAATTCAGAA AAAGACCAAC ACCCCGGAAG CTCAGCAGAA ATGTATTACT 181 CGTCTGCTGA TATTTCATTT TTGTGTTAAT CTTCCAATCC TGATAGTTAC GTATCCGCTC 241 TTTAAATTCA TGGGGATGCG ATCTACTCTT CCATTGCCAT CCTGGAAAGT GGTTTCAACC 301 CAAGTTTTAT TCTATTTCAT CTTGGAGGAT TTCGTATTTT ACTGGGGACA CAGAGTTTTA 361 CATACGAAAT GGCTCTACAA GCACGTCCAC AGTGTCCATC ATGAGTACGC GACACCATTT 421 GGTTTGACAT CTGAGTATGC TCACCCTGCT GAAATTCTCT TCCTTGGATT TGCTACGGTC 481 ATTGGTCCTG CAATCACCGG GCCACATTTG ATAACATTAT ATCTATGGAT CTCTCTTAGA 541 ATCCTCGAGA CAGTCGAGGC ACATTCTGGA TACCATTT Predicted gene structure (within gDNA segment 3198 to 508): Exon 1 2598 2461 ( 138 n); cDNA 1 138 ( 138 n); score: 1.000 Intron 1 2460 2304 ( 157 n); Pd: 0.874 (s: 1.00), Pa: 0.996 (s: 1.00) Exon 2 2303 2158 ( 146 n); cDNA 139 284 ( 146 n); score: 1.000 Intron 2 2157 1491 ( 667 n); Pd: 0.991 (s: 1.00), Pa: 0.975 (s: 1.00) Exon 3 1490 1371 ( 120 n); cDNA 285 404 ( 120 n); score: 1.000 Intron 3 1370 1292 ( 79 n); Pd: 0.966 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 4 1291 1118 ( 174 n); cDNA 405 578 ( 174 n); score: 1.000 MATCH C06HBa0158P14.1-9- SGN-E336940+ 1.000 578 1.000 C PGS_C06HBa0158P14.1-9-_SGN-E336940+ (2598 2461,2303 2158,1490 1371,1291 1118) Alignment (genomic DNA sequence = upper lines): TTTCTTCTTG CAAATTTTAG TGATTTCCAA TTGACTTCTC TTGGAGGTTT CATTGTTCAT 2539 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTCTTCTTG CAAATTTTAG TGATTTCCAA TTGACTTCTC TTGGAGGTTT CATTGTTCAT 60 GAGAGCGCTT TCTTCTTGTC TGGAATCCCT TTCATCCTTT TCGAAAAGGC AGGGTGGTTT 2479 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGAGCGCTT TCTTCTTGTC TGGAATCCCT TTCATCCTTT TCGAAAAGGC AGGGTGGTTT 120 GGCAAGTACA AAATTCAGGT AATGGAATGA TGTTTCTTGT TCAAAATGAT CCCAAACATC 2419 |||||||||| |||||||| GGCAAGTACA AAATTCAG.. .......... .......... .......... .......... 138 AACGATATTC GACTCAAGAC TAGTACTAGT ACTCGTGCAC GAGTACGTAG TTCATTCCTA 2359 .......... .......... .......... .......... .......... .......... 138 TCATTATTCA CATGAATTTT CATTTTGTTG CACTGTCGAC CTATTTGTGT TGCAGAAAAA 2299 ||||| .......... .......... .......... .......... .......... .....AAAAA 143 GACCAACACC CCGGAAGCTC AGCAGAAATG TATTACTCGT CTGCTGATAT TTCATTTTTG 2239 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GACCAACACC CCGGAAGCTC AGCAGAAATG TATTACTCGT CTGCTGATAT TTCATTTTTG 203 TGTTAATCTT CCAATCCTGA TAGTTACGTA TCCGCTCTTT AAATTCATGG GGATGCGATC 2179 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTTAATCTT CCAATCCTGA TAGTTACGTA TCCGCTCTTT AAATTCATGG GGATGCGATC 263 TACTCTTCCA TTGCCATCCT GGTATTTTCT GCTTCTCTGT ATACTAAGCT TTACTTGTGT 2119 |||||||||| |||||||||| | TACTCTTCCA TTGCCATCCT G......... .......... .......... .......... 284 GATTGCATAC CTTTTACTGA TCTTGCAATC TTCGTTTCTT TTGTTTTGCT TTCTACTTCT 2059 .......... .......... .......... .......... .......... .......... 284 TTACGGTTCT CTTTTTAGAA TCAATAACCA TTTTGTTAGC CTGATGCATT GCATGTTTAG 1999 .......... .......... .......... .......... .......... .......... 284 GCTATGGTTA TCAAAATAGG CTAACTGAAT GGGAGAAGTA GTACAACAAG ATTATATGTA 1939 .......... .......... .......... .......... .......... .......... 284 CAGTTGTTAG ATTGACAACG TTATGCAGAA GTGAATGTTG TGAACCTCTA TGGTCCAACA 1879 .......... .......... .......... .......... .......... .......... 284 TATTCGATAG AAGGTGCACG TAGCCTCACA TAGAGAATAA GTTTTCTCTG ACTCATGTCC 1819 .......... .......... .......... .......... .......... .......... 284 TACAGGGACA TCGAGATCAG ATCACTGGTA TATAGATGGG CAAAATCATG GTGGTTGAAC 1759 .......... .......... .......... .......... .......... .......... 284 AGGAGAAGGT AGATCTAAAA TCATACGGAA TGAAGTTGTC TTGAAAGACC TATCATCCCT 1699 .......... .......... .......... .......... .......... .......... 284 TTAGATTTCA TGCAAACATT GAGAAACATA TGAAACAAAC AACGGAAAAG AACATACCTG 1639 .......... .......... .......... .......... .......... .......... 284 TATTGGTGAT ACCAATTAAT TGATAAATGA GGATTCATGC AATCGACTCC AACTAGCTTG 1579 .......... .......... .......... .......... .......... .......... 284 GAATTGAGGC GTAGTAGTTG TATAATTTCG CAAGTATCTT TTCTGCTTAT TGATCAGAGT 1519 .......... .......... .......... .......... .......... .......... 284 AAATTGCAAA TACTTCTTTT TTCTGCAGGA AAGTGGTTTC AACCCAAGTT TTATTCTATT 1459 || |||||||||| |||||||||| |||||||||| .......... .......... ........GA AAGTGGTTTC AACCCAAGTT TTATTCTATT 316 TCATCTTGGA GGATTTCGTA TTTTACTGGG GACACAGAGT TTTACATACG AAATGGCTCT 1399 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCATCTTGGA GGATTTCGTA TTTTACTGGG GACACAGAGT TTTACATACG AAATGGCTCT 376 ACAAGCACGT CCACAGTGTC CATCATGAGT ATGTGAACTA CTTAAATTCT TCGAGTTTCA 1339 |||||||||| |||||||||| |||||||| ACAAGCACGT CCACAGTGTC CATCATGA.. .......... .......... .......... 404 CTTTTTCTCC CCATGAAATT CACAACTTTC TGCTTTTGTT ACACTAGGTA CGCGACACCA 1279 ||| |||||||||| .......... .......... .......... .......... .......GTA CGCGACACCA 417 TTTGGTTTGA CATCTGAGTA TGCTCACCCT GCTGAAATTC TCTTCCTTGG ATTTGCTACG 1219 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTGGTTTGA CATCTGAGTA TGCTCACCCT GCTGAAATTC TCTTCCTTGG ATTTGCTACG 477 GTCATTGGTC CTGCAATCAC CGGGCCACAT TTGATAACAT TATATCTATG GATCTCTCTT 1159 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTCATTGGTC CTGCAATCAC CGGGCCACAT TTGATAACAT TATATCTATG GATCTCTCTT 537 AGAATCCTCG AGACAGTCGA GGCACATTCT GGATACCATT T 1118 |||||||||| |||||||||| |||||||||| |||||||||| | AGAATCCTCG AGACAGTCGA GGCACATTCT GGATACCATT T 578 hqPGS_C06HBa0158P14.1-9-_SGN-E336940+ (2598 2461,2303 2158,1490 1371,1291 1118) ******************************************************************************** EST sequence 5 +strand 597 n (File: SGN-E313936+) 1 TGGCTTCCAT GATCGAATCT GCTTGGGCGT TTCTTCTTGC AAATTTTAGT GATTTCCAAT 61 TGACTTCTCT TGGAGGTTTC ATTGTTCATG AGAGCGCTTT CTTCTTGTCT GGAATCCCTT 121 TCATCCTTTT CGAAAAGGCA GGGTGGTTTG GCAAGTACAA AATTCAGAAA AAGACCAACA 181 CCCCGGAAGC TCAGCAGAAA TGTATTACTC GTCTGCTGAT ATTTCATTTT TGTGTTAATC 241 TTCCAATCCT GATAGTTACG TATCCGCTCT TTAAATTCAT GGGGATGCGA TCTACTCTTC 301 CATTGCCATC CTGGAAAGTG GTTTCAACCC AAGTTTTATT CTATTTCATC TTGGAGGATT 361 TCGTATTTTA CTGGGGACAC AGAGTTTTAC ATACGAAATG GCTCTACAAG CACGTCCACA 421 GTGTCCATCA TGAGTACGCG ACACCATTTG GTTTGACATC TGAGTATGCT CACCCTGCTG 481 AAATTCTCTT CCTTGGATTT GCTACGGTCA TTGGTCCTGC AATCACCGGG CCACATTTGA 541 TAACATTATA TCTATGGATC TCTCTTAGAA TCCTCGAGAC AGTCGAGGCA CATTCTG Predicted gene structure (within gDNA segment 3479 to 518): Exon 1 2598 2461 ( 138 n); cDNA 30 167 ( 138 n); score: 1.000 Intron 1 2460 2304 ( 157 n); Pd: 0.874 (s: 1.00), Pa: 0.996 (s: 1.00) Exon 2 2303 2158 ( 146 n); cDNA 168 313 ( 146 n); score: 1.000 Intron 2 2157 1491 ( 667 n); Pd: 0.991 (s: 1.00), Pa: 0.975 (s: 1.00) Exon 3 1490 1371 ( 120 n); cDNA 314 433 ( 120 n); score: 1.000 Intron 3 1370 1292 ( 79 n); Pd: 0.966 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 4 1291 1128 ( 164 n); cDNA 434 597 ( 164 n); score: 1.000 MATCH C06HBa0158P14.1-9- SGN-E313936+ 1.000 568 0.951 C PGS_C06HBa0158P14.1-9-_SGN-E313936+ (2598 2461,2303 2158,1490 1371,1291 1128) Alignment (genomic DNA sequence = upper lines): TTTCTTCTTG CAAATTTTAG TGATTTCCAA TTGACTTCTC TTGGAGGTTT CATTGTTCAT 2539 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTCTTCTTG CAAATTTTAG TGATTTCCAA TTGACTTCTC TTGGAGGTTT CATTGTTCAT 89 GAGAGCGCTT TCTTCTTGTC TGGAATCCCT TTCATCCTTT TCGAAAAGGC AGGGTGGTTT 2479 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGAGCGCTT TCTTCTTGTC TGGAATCCCT TTCATCCTTT TCGAAAAGGC AGGGTGGTTT 149 GGCAAGTACA AAATTCAGGT AATGGAATGA TGTTTCTTGT TCAAAATGAT CCCAAACATC 2419 |||||||||| |||||||| GGCAAGTACA AAATTCAG.. .......... .......... .......... .......... 167 AACGATATTC GACTCAAGAC TAGTACTAGT ACTCGTGCAC GAGTACGTAG TTCATTCCTA 2359 .......... .......... .......... .......... .......... .......... 167 TCATTATTCA CATGAATTTT CATTTTGTTG CACTGTCGAC CTATTTGTGT TGCAGAAAAA 2299 ||||| .......... .......... .......... .......... .......... .....AAAAA 172 GACCAACACC CCGGAAGCTC AGCAGAAATG TATTACTCGT CTGCTGATAT TTCATTTTTG 2239 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GACCAACACC CCGGAAGCTC AGCAGAAATG TATTACTCGT CTGCTGATAT TTCATTTTTG 232 TGTTAATCTT CCAATCCTGA TAGTTACGTA TCCGCTCTTT AAATTCATGG GGATGCGATC 2179 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTTAATCTT CCAATCCTGA TAGTTACGTA TCCGCTCTTT AAATTCATGG GGATGCGATC 292 TACTCTTCCA TTGCCATCCT GGTATTTTCT GCTTCTCTGT ATACTAAGCT TTACTTGTGT 2119 |||||||||| |||||||||| | TACTCTTCCA TTGCCATCCT G......... .......... .......... .......... 313 GATTGCATAC CTTTTACTGA TCTTGCAATC TTCGTTTCTT TTGTTTTGCT TTCTACTTCT 2059 .......... .......... .......... .......... .......... .......... 313 TTACGGTTCT CTTTTTAGAA TCAATAACCA TTTTGTTAGC CTGATGCATT GCATGTTTAG 1999 .......... .......... .......... .......... .......... .......... 313 GCTATGGTTA TCAAAATAGG CTAACTGAAT GGGAGAAGTA GTACAACAAG ATTATATGTA 1939 .......... .......... .......... .......... .......... .......... 313 CAGTTGTTAG ATTGACAACG TTATGCAGAA GTGAATGTTG TGAACCTCTA TGGTCCAACA 1879 .......... .......... .......... .......... .......... .......... 313 TATTCGATAG AAGGTGCACG TAGCCTCACA TAGAGAATAA GTTTTCTCTG ACTCATGTCC 1819 .......... .......... .......... .......... .......... .......... 313 TACAGGGACA TCGAGATCAG ATCACTGGTA TATAGATGGG CAAAATCATG GTGGTTGAAC 1759 .......... .......... .......... .......... .......... .......... 313 AGGAGAAGGT AGATCTAAAA TCATACGGAA TGAAGTTGTC TTGAAAGACC TATCATCCCT 1699 .......... .......... .......... .......... .......... .......... 313 TTAGATTTCA TGCAAACATT GAGAAACATA TGAAACAAAC AACGGAAAAG AACATACCTG 1639 .......... .......... .......... .......... .......... .......... 313 TATTGGTGAT ACCAATTAAT TGATAAATGA GGATTCATGC AATCGACTCC AACTAGCTTG 1579 .......... .......... .......... .......... .......... .......... 313 GAATTGAGGC GTAGTAGTTG TATAATTTCG CAAGTATCTT TTCTGCTTAT TGATCAGAGT 1519 .......... .......... .......... .......... .......... .......... 313 AAATTGCAAA TACTTCTTTT TTCTGCAGGA AAGTGGTTTC AACCCAAGTT TTATTCTATT 1459 || |||||||||| |||||||||| |||||||||| .......... .......... ........GA AAGTGGTTTC AACCCAAGTT TTATTCTATT 345 TCATCTTGGA GGATTTCGTA TTTTACTGGG GACACAGAGT TTTACATACG AAATGGCTCT 1399 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCATCTTGGA GGATTTCGTA TTTTACTGGG GACACAGAGT TTTACATACG AAATGGCTCT 405 ACAAGCACGT CCACAGTGTC CATCATGAGT ATGTGAACTA CTTAAATTCT TCGAGTTTCA 1339 |||||||||| |||||||||| |||||||| ACAAGCACGT CCACAGTGTC CATCATGA.. .......... .......... .......... 433 CTTTTTCTCC CCATGAAATT CACAACTTTC TGCTTTTGTT ACACTAGGTA CGCGACACCA 1279 ||| |||||||||| .......... .......... .......... .......... .......GTA CGCGACACCA 446 TTTGGTTTGA CATCTGAGTA TGCTCACCCT GCTGAAATTC TCTTCCTTGG ATTTGCTACG 1219 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTGGTTTGA CATCTGAGTA TGCTCACCCT GCTGAAATTC TCTTCCTTGG ATTTGCTACG 506 GTCATTGGTC CTGCAATCAC CGGGCCACAT TTGATAACAT TATATCTATG GATCTCTCTT 1159 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTCATTGGTC CTGCAATCAC CGGGCCACAT TTGATAACAT TATATCTATG GATCTCTCTT 566 AGAATCCTCG AGACAGTCGA GGCACATTCT G 1128 |||||||||| |||||||||| |||||||||| | AGAATCCTCG AGACAGTCGA GGCACATTCT G 597 hqPGS_C06HBa0158P14.1-9-_SGN-E313936+ (2598 2461,2303 2158,1490 1371,1291 1128) ******************************************************************************** EST sequence 4 +strand 564 n (File: SGN-E313972+) 1 TGGCTTCCAT GATCGAATCT GCTTGGGCGT TGCTTCTTGC AAATTTTAGT GATTTCCAAT 61 TGACTTCTCT TGGAGGTTTC ATTGTTCATG AGAGCGCTTT CTTCTTGTCT GGAATCCCTT 121 TCATCCTTTT CGAAAAGGCA GGGTGGTTTG GCAAGTACAA AATTCAGAAA AAGACCAACA 181 CCCCGGAAGC TCAGCAGAAA TGTATTACTC GTCTGCTGAT ATTTCATTTT TGTGTTAATC 241 TTCCAATCCT GATAGTTACG TATCCGCTCT TTAAATTCAT GGGGATGCGA TCTACTCTTC 301 CATTGCCATC CTGGAAAGTG GTTTCAACCC AAGTTTTATT CTATTTCATC TTGGAGGATT 361 TCGTATTTTA CTGGGGACAC AGAGTTTTAC ATACGAAATG GCTCTACAAG CACGTCCACA 421 GTGTCCATCA TGAGTACGCG ACACCATTTG GTTTGACATC TGAGTATGCT CACCCTGCTG 481 AAATTCTCTT CCTTGGATTT GCTACGGTCA TTGGTCCTGC AATCACCGGG CCACATTTGA 541 TAACATTATA TCTATGGATC TCTC Predicted gene structure (within gDNA segment 3515 to 551): Exon 1 2598 2461 ( 138 n); cDNA 30 167 ( 138 n); score: 0.993 Intron 1 2460 2304 ( 157 n); Pd: 0.874 (s: 1.00), Pa: 0.996 (s: 1.00) Exon 2 2303 2158 ( 146 n); cDNA 168 313 ( 146 n); score: 1.000 Intron 2 2157 1491 ( 667 n); Pd: 0.991 (s: 1.00), Pa: 0.975 (s: 1.00) Exon 3 1490 1371 ( 120 n); cDNA 314 433 ( 120 n); score: 1.000 Intron 3 1370 1292 ( 79 n); Pd: 0.966 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 4 1291 1161 ( 131 n); cDNA 434 564 ( 131 n); score: 1.000 MATCH C06HBa0158P14.1-9- SGN-E313972+ 0.998 535 0.949 C PGS_C06HBa0158P14.1-9-_SGN-E313972+ (2598 2461,2303 2158,1490 1371,1291 1161) Alignment (genomic DNA sequence = upper lines): TTTCTTCTTG CAAATTTTAG TGATTTCCAA TTGACTTCTC TTGGAGGTTT CATTGTTCAT 2539 || ||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGCTTCTTG CAAATTTTAG TGATTTCCAA TTGACTTCTC TTGGAGGTTT CATTGTTCAT 89 GAGAGCGCTT TCTTCTTGTC TGGAATCCCT TTCATCCTTT TCGAAAAGGC AGGGTGGTTT 2479 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGAGCGCTT TCTTCTTGTC TGGAATCCCT TTCATCCTTT TCGAAAAGGC AGGGTGGTTT 149 GGCAAGTACA AAATTCAGGT AATGGAATGA TGTTTCTTGT TCAAAATGAT CCCAAACATC 2419 |||||||||| |||||||| GGCAAGTACA AAATTCAG.. .......... .......... .......... .......... 167 AACGATATTC GACTCAAGAC TAGTACTAGT ACTCGTGCAC GAGTACGTAG TTCATTCCTA 2359 .......... .......... .......... .......... .......... .......... 167 TCATTATTCA CATGAATTTT CATTTTGTTG CACTGTCGAC CTATTTGTGT TGCAGAAAAA 2299 ||||| .......... .......... .......... .......... .......... .....AAAAA 172 GACCAACACC CCGGAAGCTC AGCAGAAATG TATTACTCGT CTGCTGATAT TTCATTTTTG 2239 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GACCAACACC CCGGAAGCTC AGCAGAAATG TATTACTCGT CTGCTGATAT TTCATTTTTG 232 TGTTAATCTT CCAATCCTGA TAGTTACGTA TCCGCTCTTT AAATTCATGG GGATGCGATC 2179 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTTAATCTT CCAATCCTGA TAGTTACGTA TCCGCTCTTT AAATTCATGG GGATGCGATC 292 TACTCTTCCA TTGCCATCCT GGTATTTTCT GCTTCTCTGT ATACTAAGCT TTACTTGTGT 2119 |||||||||| |||||||||| | TACTCTTCCA TTGCCATCCT G......... .......... .......... .......... 313 GATTGCATAC CTTTTACTGA TCTTGCAATC TTCGTTTCTT TTGTTTTGCT TTCTACTTCT 2059 .......... .......... .......... .......... .......... .......... 313 TTACGGTTCT CTTTTTAGAA TCAATAACCA TTTTGTTAGC CTGATGCATT GCATGTTTAG 1999 .......... .......... .......... .......... .......... .......... 313 GCTATGGTTA TCAAAATAGG CTAACTGAAT GGGAGAAGTA GTACAACAAG ATTATATGTA 1939 .......... .......... .......... .......... .......... .......... 313 CAGTTGTTAG ATTGACAACG TTATGCAGAA GTGAATGTTG TGAACCTCTA TGGTCCAACA 1879 .......... .......... .......... .......... .......... .......... 313 TATTCGATAG AAGGTGCACG TAGCCTCACA TAGAGAATAA GTTTTCTCTG ACTCATGTCC 1819 .......... .......... .......... .......... .......... .......... 313 TACAGGGACA TCGAGATCAG ATCACTGGTA TATAGATGGG CAAAATCATG GTGGTTGAAC 1759 .......... .......... .......... .......... .......... .......... 313 AGGAGAAGGT AGATCTAAAA TCATACGGAA TGAAGTTGTC TTGAAAGACC TATCATCCCT 1699 .......... .......... .......... .......... .......... .......... 313 TTAGATTTCA TGCAAACATT GAGAAACATA TGAAACAAAC AACGGAAAAG AACATACCTG 1639 .......... .......... .......... .......... .......... .......... 313 TATTGGTGAT ACCAATTAAT TGATAAATGA GGATTCATGC AATCGACTCC AACTAGCTTG 1579 .......... .......... .......... .......... .......... .......... 313 GAATTGAGGC GTAGTAGTTG TATAATTTCG CAAGTATCTT TTCTGCTTAT TGATCAGAGT 1519 .......... .......... .......... .......... .......... .......... 313 AAATTGCAAA TACTTCTTTT TTCTGCAGGA AAGTGGTTTC AACCCAAGTT TTATTCTATT 1459 || |||||||||| |||||||||| |||||||||| .......... .......... ........GA AAGTGGTTTC AACCCAAGTT TTATTCTATT 345 TCATCTTGGA GGATTTCGTA TTTTACTGGG GACACAGAGT TTTACATACG AAATGGCTCT 1399 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCATCTTGGA GGATTTCGTA TTTTACTGGG GACACAGAGT TTTACATACG AAATGGCTCT 405 ACAAGCACGT CCACAGTGTC CATCATGAGT ATGTGAACTA CTTAAATTCT TCGAGTTTCA 1339 |||||||||| |||||||||| |||||||| ACAAGCACGT CCACAGTGTC CATCATGA.. .......... .......... .......... 433 CTTTTTCTCC CCATGAAATT CACAACTTTC TGCTTTTGTT ACACTAGGTA CGCGACACCA 1279 ||| |||||||||| .......... .......... .......... .......... .......GTA CGCGACACCA 446 TTTGGTTTGA CATCTGAGTA TGCTCACCCT GCTGAAATTC TCTTCCTTGG ATTTGCTACG 1219 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTGGTTTGA CATCTGAGTA TGCTCACCCT GCTGAAATTC TCTTCCTTGG ATTTGCTACG 506 GTCATTGGTC CTGCAATCAC CGGGCCACAT TTGATAACAT TATATCTATG GATCTCTC 1161 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||| GTCATTGGTC CTGCAATCAC CGGGCCACAT TTGATAACAT TATATCTATG GATCTCTC 564 hqPGS_C06HBa0158P14.1-9-_SGN-E313972+ (2598 2461,2303 2158,1490 1371,1291 1161) ******************************************************************************** EST sequence 11 +strand 352 n (File: SGN-E322761+) 1 GTGGTTTGGC AAGTACAAAA TTCAGAAAAA GACCAACACC CCGGAAGCTC AGCAGAAATG 61 TATTACTCGT CTGCTGATAT TTCATTTTTG TGTTAATCTT CCAATCCTGA TAGTTACGTA 121 TCCGCTCTTT AAATTCATGG GGATGCGATC TACTCTTCCA TTGCCATCCT GGAAAGTGGT 181 TTCAACCCAA GTTTTATTCT ATTTCATCTT GGAGGATTTC GTATTTTACT GGGGACACAG 241 AGTTTTACAT ACGAAATGGC TCTACAAGCA CGTCCACAGT GTCCATCATG AGTACGCGAC 301 ACCATTTGGT TTGACATCTG AGTATGCTCA CCCTGCTGAA ATTCTCTTCC TT Predicted gene structure (within gDNA segment 3126 to 621): Exon 1 2485 2461 ( 25 n); cDNA 1 25 ( 25 n); score: 1.000 Intron 1 2460 2304 ( 157 n); Pd: 0.874 (s: 0), Pa: 0.996 (s: 1.00) Exon 2 2303 2158 ( 146 n); cDNA 26 171 ( 146 n); score: 1.000 Intron 2 2157 1491 ( 667 n); Pd: 0.991 (s: 1.00), Pa: 0.975 (s: 1.00) Exon 3 1490 1371 ( 120 n); cDNA 172 291 ( 120 n); score: 1.000 Intron 3 1370 1292 ( 79 n); Pd: 0.966 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 4 1291 1231 ( 61 n); cDNA 292 352 ( 61 n); score: 1.000 MATCH C06HBa0158P14.1-9- SGN-E322761+ 1.000 352 1.000 C PGS_C06HBa0158P14.1-9-_SGN-E322761+ (2485 2461,2303 2158,1490 1371,1291 1231) Alignment (genomic DNA sequence = upper lines): GTGGTTTGGC AAGTACAAAA TTCAGGTAAT GGAATGATGT TTCTTGTTCA AAATGATCCC 2426 |||||||||| |||||||||| ||||| GTGGTTTGGC AAGTACAAAA TTCAG..... .......... .......... .......... 25 AAACATCAAC GATATTCGAC TCAAGACTAG TACTAGTACT CGTGCACGAG TACGTAGTTC 2366 .......... .......... .......... .......... .......... .......... 25 ATTCCTATCA TTATTCACAT GAATTTTCAT TTTGTTGCAC TGTCGACCTA TTTGTGTTGC 2306 .......... .......... .......... .......... .......... .......... 25 AGAAAAAGAC CAACACCCCG GAAGCTCAGC AGAAATGTAT TACTCGTCTG CTGATATTTC 2246 |||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ..AAAAAGAC CAACACCCCG GAAGCTCAGC AGAAATGTAT TACTCGTCTG CTGATATTTC 83 ATTTTTGTGT TAATCTTCCA ATCCTGATAG TTACGTATCC GCTCTTTAAA TTCATGGGGA 2186 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTTTTGTGT TAATCTTCCA ATCCTGATAG TTACGTATCC GCTCTTTAAA TTCATGGGGA 143 TGCGATCTAC TCTTCCATTG CCATCCTGGT ATTTTCTGCT TCTCTGTATA CTAAGCTTTA 2126 |||||||||| |||||||||| |||||||| TGCGATCTAC TCTTCCATTG CCATCCTG.. .......... .......... .......... 171 CTTGTGTGAT TGCATACCTT TTACTGATCT TGCAATCTTC GTTTCTTTTG TTTTGCTTTC 2066 .......... .......... .......... .......... .......... .......... 171 TACTTCTTTA CGGTTCTCTT TTTAGAATCA ATAACCATTT TGTTAGCCTG ATGCATTGCA 2006 .......... .......... .......... .......... .......... .......... 171 TGTTTAGGCT ATGGTTATCA AAATAGGCTA ACTGAATGGG AGAAGTAGTA CAACAAGATT 1946 .......... .......... .......... .......... .......... .......... 171 ATATGTACAG TTGTTAGATT GACAACGTTA TGCAGAAGTG AATGTTGTGA ACCTCTATGG 1886 .......... .......... .......... .......... .......... .......... 171 TCCAACATAT TCGATAGAAG GTGCACGTAG CCTCACATAG AGAATAAGTT TTCTCTGACT 1826 .......... .......... .......... .......... .......... .......... 171 CATGTCCTAC AGGGACATCG AGATCAGATC ACTGGTATAT AGATGGGCAA AATCATGGTG 1766 .......... .......... .......... .......... .......... .......... 171 GTTGAACAGG AGAAGGTAGA TCTAAAATCA TACGGAATGA AGTTGTCTTG AAAGACCTAT 1706 .......... .......... .......... .......... .......... .......... 171 CATCCCTTTA GATTTCATGC AAACATTGAG AAACATATGA AACAAACAAC GGAAAAGAAC 1646 .......... .......... .......... .......... .......... .......... 171 ATACCTGTAT TGGTGATACC AATTAATTGA TAAATGAGGA TTCATGCAAT CGACTCCAAC 1586 .......... .......... .......... .......... .......... .......... 171 TAGCTTGGAA TTGAGGCGTA GTAGTTGTAT AATTTCGCAA GTATCTTTTC TGCTTATTGA 1526 .......... .......... .......... .......... .......... .......... 171 TCAGAGTAAA TTGCAAATAC TTCTTTTTTC TGCAGGAAAG TGGTTTCAAC CCAAGTTTTA 1466 ||||| |||||||||| |||||||||| .......... .......... .......... .....GAAAG TGGTTTCAAC CCAAGTTTTA 196 TTCTATTTCA TCTTGGAGGA TTTCGTATTT TACTGGGGAC ACAGAGTTTT ACATACGAAA 1406 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCTATTTCA TCTTGGAGGA TTTCGTATTT TACTGGGGAC ACAGAGTTTT ACATACGAAA 256 TGGCTCTACA AGCACGTCCA CAGTGTCCAT CATGAGTATG TGAACTACTT AAATTCTTCG 1346 |||||||||| |||||||||| |||||||||| ||||| TGGCTCTACA AGCACGTCCA CAGTGTCCAT CATGA..... .......... .......... 291 AGTTTCACTT TTTCTCCCCA TGAAATTCAC AACTTTCTGC TTTTGTTACA CTAGGTACGC 1286 |||||| .......... .......... .......... .......... .......... ....GTACGC 297 GACACCATTT GGTTTGACAT CTGAGTATGC TCACCCTGCT GAAATTCTCT TCCTT 1231 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||| GACACCATTT GGTTTGACAT CTGAGTATGC TCACCCTGCT GAAATTCTCT TCCTT 352 hqPGS_C06HBa0158P14.1-9-_SGN-E322761+ (2485 2461,2303 2158,1490 1371,1291 1231) ******************************************************************************** EST sequence 12 +strand 486 n (File: SGN-E313096+) 1 GGCTTCCATG ATCGAATCTG CTTGGGCGTT TCTTCTTGCA AATTTTAGTG ATTTCCAATT 61 GACTTCTCTT GGAGGTTTCA TTGTTCATGA GAGCGCTTTC TTCTTGTCTG GAATCCCTTT 121 CATCCTTTTC GAAAAGGCAG GGTGGTTTGG CAAGTACAAA ATTCAGAAAA AGACCAACAC 181 CCCGGAAGCT CAGCAGAAAT GTATTACTTG TCTGCTGATA TTTCATTTTT GTGTTAATCT 241 TCCAATCCTG ATAGTTACGT ATCCGCTCTT TAAATTCATG GGGATGCGAT CTACTCTTCC 301 ATTGCCATCC TGGAAAGTGG TTTCAACCCA AGTTTTATTC TATTTCATCT TGGAGGATTT 361 CGTATTTTAC TGGGGACACA GAGTTTTACA TACGAAATGG CTCTACAAGC ACGTCCACAG 421 TGTCCATCAT GAGTACGCGA CACCATTTGG TTTGACATCT GAGTATGCTC ACCCTGCTGA 481 AATTCT Predicted gene structure (within gDNA segment 3469 to 628): Exon 1 2598 2461 ( 138 n); cDNA 29 166 ( 138 n); score: 1.000 Intron 1 2460 2304 ( 157 n); Pd: 0.874 (s: 1.00), Pa: 0.996 (s: 0.98) Exon 2 2303 2158 ( 146 n); cDNA 167 312 ( 146 n); score: 0.993 Intron 2 2157 1491 ( 667 n); Pd: 0.991 (s: 1.00), Pa: 0.975 (s: 1.00) Exon 3 1490 1371 ( 120 n); cDNA 313 432 ( 120 n); score: 1.000 Intron 3 1370 1292 ( 79 n); Pd: 0.966 (s: 1.00), Pa: 0.999 (s: 1.00) Exon 4 1291 1238 ( 54 n); cDNA 433 486 ( 54 n); score: 1.000 MATCH C06HBa0158P14.1-9- SGN-E313096+ 0.998 458 0.942 C PGS_C06HBa0158P14.1-9-_SGN-E313096+ (2598 2461,2303 2158,1490 1371,1291 1238) Alignment (genomic DNA sequence = upper lines): TTTCTTCTTG CAAATTTTAG TGATTTCCAA TTGACTTCTC TTGGAGGTTT CATTGTTCAT 2539 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTCTTCTTG CAAATTTTAG TGATTTCCAA TTGACTTCTC TTGGAGGTTT CATTGTTCAT 88 GAGAGCGCTT TCTTCTTGTC TGGAATCCCT TTCATCCTTT TCGAAAAGGC AGGGTGGTTT 2479 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGAGCGCTT TCTTCTTGTC TGGAATCCCT TTCATCCTTT TCGAAAAGGC AGGGTGGTTT 148 GGCAAGTACA AAATTCAGGT AATGGAATGA TGTTTCTTGT TCAAAATGAT CCCAAACATC 2419 |||||||||| |||||||| GGCAAGTACA AAATTCAG.. .......... .......... .......... .......... 166 AACGATATTC GACTCAAGAC TAGTACTAGT ACTCGTGCAC GAGTACGTAG TTCATTCCTA 2359 .......... .......... .......... .......... .......... .......... 166 TCATTATTCA CATGAATTTT CATTTTGTTG CACTGTCGAC CTATTTGTGT TGCAGAAAAA 2299 ||||| .......... .......... .......... .......... .......... .....AAAAA 171 GACCAACACC CCGGAAGCTC AGCAGAAATG TATTACTCGT CTGCTGATAT TTCATTTTTG 2239 |||||||||| |||||||||| |||||||||| ||||||| || |||||||||| |||||||||| GACCAACACC CCGGAAGCTC AGCAGAAATG TATTACTTGT CTGCTGATAT TTCATTTTTG 231 TGTTAATCTT CCAATCCTGA TAGTTACGTA TCCGCTCTTT AAATTCATGG GGATGCGATC 2179 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTTAATCTT CCAATCCTGA TAGTTACGTA TCCGCTCTTT AAATTCATGG GGATGCGATC 291 TACTCTTCCA TTGCCATCCT GGTATTTTCT GCTTCTCTGT ATACTAAGCT TTACTTGTGT 2119 |||||||||| |||||||||| | TACTCTTCCA TTGCCATCCT G......... .......... .......... .......... 312 GATTGCATAC CTTTTACTGA TCTTGCAATC TTCGTTTCTT TTGTTTTGCT TTCTACTTCT 2059 .......... .......... .......... .......... .......... .......... 312 TTACGGTTCT CTTTTTAGAA TCAATAACCA TTTTGTTAGC CTGATGCATT GCATGTTTAG 1999 .......... .......... .......... .......... .......... .......... 312 GCTATGGTTA TCAAAATAGG CTAACTGAAT GGGAGAAGTA GTACAACAAG ATTATATGTA 1939 .......... .......... .......... .......... .......... .......... 312 CAGTTGTTAG ATTGACAACG TTATGCAGAA GTGAATGTTG TGAACCTCTA TGGTCCAACA 1879 .......... .......... .......... .......... .......... .......... 312 TATTCGATAG AAGGTGCACG TAGCCTCACA TAGAGAATAA GTTTTCTCTG ACTCATGTCC 1819 .......... .......... .......... .......... .......... .......... 312 TACAGGGACA TCGAGATCAG ATCACTGGTA TATAGATGGG CAAAATCATG GTGGTTGAAC 1759 .......... .......... .......... .......... .......... .......... 312 AGGAGAAGGT AGATCTAAAA TCATACGGAA TGAAGTTGTC TTGAAAGACC TATCATCCCT 1699 .......... .......... .......... .......... .......... .......... 312 TTAGATTTCA TGCAAACATT GAGAAACATA TGAAACAAAC AACGGAAAAG AACATACCTG 1639 .......... .......... .......... .......... .......... .......... 312 TATTGGTGAT ACCAATTAAT TGATAAATGA GGATTCATGC AATCGACTCC AACTAGCTTG 1579 .......... .......... .......... .......... .......... .......... 312 GAATTGAGGC GTAGTAGTTG TATAATTTCG CAAGTATCTT TTCTGCTTAT TGATCAGAGT 1519 .......... .......... .......... .......... .......... .......... 312 AAATTGCAAA TACTTCTTTT TTCTGCAGGA AAGTGGTTTC AACCCAAGTT TTATTCTATT 1459 || |||||||||| |||||||||| |||||||||| .......... .......... ........GA AAGTGGTTTC AACCCAAGTT TTATTCTATT 344 TCATCTTGGA GGATTTCGTA TTTTACTGGG GACACAGAGT TTTACATACG AAATGGCTCT 1399 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCATCTTGGA GGATTTCGTA TTTTACTGGG GACACAGAGT TTTACATACG AAATGGCTCT 404 ACAAGCACGT CCACAGTGTC CATCATGAGT ATGTGAACTA CTTAAATTCT TCGAGTTTCA 1339 |||||||||| |||||||||| |||||||| ACAAGCACGT CCACAGTGTC CATCATGA.. .......... .......... .......... 432 CTTTTTCTCC CCATGAAATT CACAACTTTC TGCTTTTGTT ACACTAGGTA CGCGACACCA 1279 ||| |||||||||| .......... .......... .......... .......... .......GTA CGCGACACCA 445 TTTGGTTTGA CATCTGAGTA TGCTCACCCT GCTGAAATTC T 1238 |||||||||| |||||||||| |||||||||| |||||||||| | TTTGGTTTGA CATCTGAGTA TGCTCACCCT GCTGAAATTC T 486 hqPGS_C06HBa0158P14.1-9-_SGN-E313096+ (2598 2461,2303 2158,1490 1371,1291 1238) ******************************************************************************** EST sequence 9 +strand 370 n (File: SGN-E279247+) 1 GCACGAGCTT CCATGATCGA ATCTGCTTGG GCGTTTCTTC TTGCAAATGG TAGTGATTTC 61 CAATTGACTT CCCTTGGAGG TTTCATTGTT CATGAGAGCG CTTTCTTCTT GTCTGGAATC 121 CCTTTCATCC TTTTCGAAAA GGCAGGGTGG TTTGGCAAGT ACAAAATTCA GGTAATGGAA 181 TGATGTTTCT TGTTCAAAAT GATCCCAAAC ATCAACGATA TTCGACTCAA GACTAGTACT 241 AGTACTCGTG CACGAGTACG GTAGTTCATT CCTATCATTA TTCACATGAA TTTTCATTTT 301 GTTGCACTGT CGACCTATTT GTGTTGCAGA AAAAGACCAA CACCCCGGAA GCTCAGCAGA 361 AATGTATTAC Predicted gene structure (within gDNA segment 3519 to 1653): Exon 1 2598 2263 ( 336 n); cDNA 34 370 ( 337 n); score: 0.984 MATCH C06HBa0158P14.1-9- SGN-E279247+ 0.984 336 0.908 C PGS_C06HBa0158P14.1-9-_SGN-E279247+ (2598 2263) Alignment (genomic DNA sequence = upper lines): TTTCTTCTTG CAAATTTTAG TGATTTCCAA TTGACTTCTC TTGGAGGTTT CATTGTTCAT 2539 |||||||||| ||||| ||| |||||||||| |||||||| | |||||||||| |||||||||| TTTCTTCTTG CAAATGGTAG TGATTTCCAA TTGACTTCCC TTGGAGGTTT CATTGTTCAT 93 GAGAGCGCTT TCTTCTTGTC TGGAATCCCT TTCATCCTTT TCGAAAAGGC AGGGTGGTTT 2479 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGAGCGCTT TCTTCTTGTC TGGAATCCCT TTCATCCTTT TCGAAAAGGC AGGGTGGTTT 153 GGCAAGTACA AAATTCAGGT AATGGAATGA TGTTTCTTGT TCAAAATGAT CCCAAACATC 2419 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGCAAGTACA AAATTCAGGT AATGGAATGA TGTTTCTTGT TCAAAATGAT CCCAAACATC 213 AACGATATTC GACTCAAGAC TAGTACTAGT ACTCGTGCAC GAGTAC-GTA GTTCATTCCT 2360 |||||||||| |||||||||| |||||||||| |||||||||| |||||| ||| |||||||||| AACGATATTC GACTCAAGAC TAGTACTAGT ACTCGTGCAC GAGTACGGTA GTTCATTCCT 273 ATCATTATTC ACATGAATTT TCATTTTGTT GCACTGTCGA CCTATTTGTG TTGCAGAAAA 2300 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCATTATTC ACATGAATTT TCATTTTGTT GCACTGTCGA CCTATTTGTG TTGCAGAAAA 333 AGACCAACAC CCCGGAAGCT CAGCAGAAAT GTATTAC 2263 |||||||||| |||||||||| |||||||||| ||||||| AGACCAACAC CCCGGAAGCT CAGCAGAAAT GTATTAC 370 hqPGS_C06HBa0158P14.1-9-_SGN-E279247+ (2598 2263) Total number of EST alignments reported: 13 ________________________________________________________________________________ Predicted gene locations (1) in segment 1 to 4358: PGL 1 (- strand): 2598 69 AGS-1 (2598 2461,2303 2158,1490 1371,1291 1079,998 918,331 69) SCR (e 1.000 d 0.874 a 0.996,e 1.000 d 0.991 a 0.975,e 1.000 d 0.966 a 0.999,e 1.000 d 0.971 a 0.723,e 1.000 d 0.988 a 0.898,e 0.996) Exon 1 2598 2461 ( 138 n); score: 1.000 Intron 1 2460 2304 ( 157 n); Pd: 0.874 Pa: 0.996 Exon 2 2303 2158 ( 146 n); score: 1.000 Intron 2 2157 1491 ( 667 n); Pd: 0.991 Pa: 0.975 Exon 3 1490 1371 ( 120 n); score: 1.000 Intron 3 1370 1292 ( 79 n); Pd: 0.966 Pa: 0.999 Exon 4 1291 1079 ( 213 n); score: 1.000 Intron 4 1078 999 ( 80 n); Pd: 0.971 Pa: 0.723 Exon 5 998 918 ( 81 n); score: 1.000 Intron 5 917 332 ( 586 n); Pd: 0.988 Pa: 0.898 Exon 6 331 69 ( 263 n); score: 0.996 PGS (1087 1079,998 918,331 69) SGN-E230327- PGS (1182 1079,998 918,331 86) SGN-E223713- PGS (1171 1079,998 918,331 86) SGN-E224081- PGS (1500 1371,1291 1079,998 918) SGN-E285528+ PGS (1500 1371,1291 1079,998 919) SGN-E285524+ PGS (2485 2461,2303 2158,1490 1371,1291 1079,998 945) SGN-E322919+ PGS (2598 2461,2303 2158,1490 1371,1291 1091) SGN-E347615+ PGS (2598 2461,2303 2158,1490 1371,1291 1118) SGN-E336940+ PGS (2598 2461,2303 2158,1490 1371,1291 1128) SGN-E313936+ PGS (2598 2461,2303 2158,1490 1371,1291 1161) SGN-E313972+ PGS (2485 2461,2303 2158,1490 1371,1291 1231) SGN-E322761+ PGS (2598 2461,2303 2158,1490 1371,1291 1238) SGN-E313096+ 3-phase translation of AGS-1 (-strand): . . . . . . 2598 TTTCTTCTTGCAAATTTTAGTGATTTCCAATTGACTTCTCTTGGAGGTTTCATTGTTCAT F L L A N F S D F Q L T S L G G F I V H F F L Q I L V I S N - L L L E V S L F M S S C K F - - F P I D F S W R F H C S . . . . . . 2538 GAGAGCGCTTTCTTCTTGTCTGGAATCCCTTTCATCCTTTTCGAAAAGGCAGGGTGGTTT E S A F F L S G I P F I L F E K A G W F R A L S S C L E S L S S F S K R Q G G L - E R F L L V W N P F H P F R K G R V V . . : . . . . 2478 GGCAAGTACAAAATTCAG : AAAAAGACCAACACCCCGGAAGCTCAGCAGAAATGTATTACT G K Y K I Q : K K T N T P E A Q Q K C I T A S T K F R : K R P T P R K L S R N V L L W Q V Q N S : E K D Q H P G S S A E M Y Y . . . . . . 2261 CGTCTGCTGATATTTCATTTTTGTGTTAATCTTCCAATCCTGATAGTTACGTATCCGCTC R L L I F H F C V N L P I L I V T Y P L V C - Y F I F V L I F Q S - - L R I R S S S A D I S F L C - S S N P D S Y V S A . . . . . : . 2201 TTTAAATTCATGGGGATGCGATCTACTCTTCCATTGCCATCCTG : GAAAGTGGTTTCAACC F K F M G M R S T L P L P S W : K V V S T L N S W G C D L L F H C H P : G K W F Q P L - I H G D A I Y S S I A I L : E S G F N . . . . . . 1474 CAAGTTTTATTCTATTTCATCTTGGAGGATTTCGTATTTTACTGGGGACACAGAGTTTTA Q V L F Y F I L E D F V F Y W G H R V L K F Y S I S S W R I S Y F T G D T E F Y P S F I L F H L G G F R I L L G T Q S F . . . . . : . 1414 CATACGAAATGGCTCTACAAGCACGTCCACAGTGTCCATCATGA : GTACGCGACACCATTT H T K W L Y K H V H S V H H E : Y A T P F I R N G S T S T S T V S I M : S T R H H L T Y E M A L Q A R P Q C P S - : V R D T I . . . . . . 1275 GGTTTGACATCTGAGTATGCTCACCCTGCTGAAATTCTCTTCCTTGGATTTGCTACGGTC G L T S E Y A H P A E I L F L G F A T V V - H L S M L T L L K F S S L D L L R S W F D I - V C S P C - N S L P W I C Y G . . . . . . 1215 ATTGGTCCTGCAATCACCGGGCCACATTTGATAACATTATATCTATGGATCTCTCTTAGA I G P A I T G P H L I T L Y L W I S L R L V L Q S P G H I - - H Y I Y G S L L E H W S C N H R A T F D N I I S M D L S - . . . . . . 1155 ATCCTCGAGACAGTCGAGGCACATTCTGGATACCATTTCCCCTGGAGCCCGTCAAACTTC I L E T V E A H S G Y H F P W S P S N F S S R Q S R H I L D T I S P G A R Q T S N P R D S R G T F W I P F P L E P V K L . . : . . . . 1095 TTGCCATTATATGGAGG : GTCTGATTTTCATGATTACCATCATCGACTGCTCTACACAAAG L P L Y G G : S D F H D Y H H R L L Y T K C H Y M E : G L I F M I T I I D C S T Q S L A I I W R : V - F S - L P S S T A L H K . . . . : . . 955 TCTGGAAACTACTCATCGACTTTCGTTTACATGGACTG : GTTATTTGGTACTGATAAGGGT S G N Y S S T F V Y M D W : L F G T D K G L E T T H R L S F T W T : G Y L V L I R V V W K L L I D F R L H G L : V I W Y - - G . . . . . . 309 TACAGAAAGTTGAAGATGCTGAAGGAGCAAGAGGGCAAAGCAATGTAAACAAGATGGGAA Y R K L K M L K E Q E G K A M - T R W E T E S - R C - R S K R A K Q C K Q D G K L Q K V E D A E G A R G Q S N V N K M G . . . . . . 249 AGTAGAGGGGGAATAAAATTACATGTTTGTTTGAGTGTATAAGAAATAGTACTGAACAGA S R G G I K L H V C L S V - E I V L N R V E G E - N Y M F V - V Y K K - Y - T D K - R G N K I T C L F E C I R N S T E Q . . . . . . 189 TTCTATTAGTAATGATGAGATTAATAACGTAAGGATTAGTTATGTTGGCATTATTAATGC F Y - - - - D - - R K D - L C W H Y - C S I S N D E I N N V R I S Y V G I I N A I L L V M M R L I T - G L V M L A L L M . . . . . . 129 AAGAAGTAGTTATAACATGCACTACATAATTCTATCTACAAAAAATATTTGTTTACAAAA K K - L - H A L H N S I Y K K Y L F T K R S S Y N M H Y I I L S T K N I C L Q K Q E V V I T C T T - F Y L Q K I F V Y K . 69 A Maximal non-overlapping open reading frames (>= 64 codons): >C06HBa0158P14.1-9-_PGL-1_AGS-1_PPS_1 (2598 2461,2303 2158,1490 1371,1291 1079,998 918,331 262) (frame '1'; 765 bp, 255 residues) 1 FLLANFSDFQ LTSLGGFIVH ESAFFLSGIP FILFEKAGWF GKYKIQKKTN TPEAQQKCIT 61 RLLIFHFCVN LPILIVTYPL FKFMGMRSTL PLPSWKVVST QVLFYFILED FVFYWGHRVL 121 HTKWLYKHVH SVHHEYATPF GLTSEYAHPA EILFLGFATV IGPAITGPHL ITLYLWISLR 181 ILETVEAHSG YHFPWSPSNF LPLYGGSDFH DYHHRLLYTK SGNYSSTFVY MDWLFGTDKG 241 YRKLKMLKEQ EGKAM- AGS-2 (2598 2263) SCR (e 0.984) Exon 1 2598 2263 ( 336 n); score: 0.984 PGS (2598 2263) SGN-E279247+ 3-phase translation of AGS-2 (-strand): . . . . . . 2598 TTTCTTCTTGCAAATTTTAGTGATTTCCAATTGACTTCTCTTGGAGGTTTCATTGTTCAT F L L A N F S D F Q L T S L G G F I V H F F L Q I L V I S N - L L L E V S L F M S S C K F - - F P I D F S W R F H C S . . . . . . 2538 GAGAGCGCTTTCTTCTTGTCTGGAATCCCTTTCATCCTTTTCGAAAAGGCAGGGTGGTTT E S A F F L S G I P F I L F E K A G W F R A L S S C L E S L S S F S K R Q G G L - E R F L L V W N P F H P F R K G R V V . . . . . . 2478 GGCAAGTACAAAATTCAGGTAATGGAATGATGTTTCTTGTTCAAAATGATCCCAAACATC G K Y K I Q V M E - C F L F K M I P N I A S T K F R - W N D V S C S K - S Q T S W Q V Q N S G N G M M F L V Q N D P K H . . . . . . 2418 AACGATATTCGACTCAAGACTAGTACTAGTACTCGTGCACGAGTACGTAGTTCATTCCTA N D I R L K T S T S T R A R V R S S F L T I F D S R L V L V L V H E Y V V H S Y Q R Y S T Q D - Y - Y S C T S T - F I P . . . . . . 2358 TCATTATTCACATGAATTTTCATTTTGTTGCACTGTCGACCTATTTGTGTTGCAGAAAAA S L F T - I F I L L H C R P I C V A E K H Y S H E F S F C C T V D L F V L Q K K I I I H M N F H F V A L S T Y L C C R K . . . . 2298 GACCAACACCCCGGAAGCTCAGCAGAAATGTATTAC D Q H P G S S A E M Y Y T N T P E A Q Q K C I R P T P R K L S R N V L Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-2 (+strand): . . . . . . 2263 GTAATACATTTCTGCTGAGCTTCCGGGGTGTTGGTCTTTTTCTGCAACACAAATAGGTCG V I H F C - A S G V L V F F C N T N R S - Y I S A E L P G C W S F S A T Q I G R N T F L L S F R G V G L F L Q H K - V . . . . . . 2323 ACAGTGCAACAAAATGAAAATTCATGTGAATAATGATAGGAATGAACTACGTACTCGTGC T V Q Q N E N S C E - - - E - T T Y S C Q C N K M K I H V N N D R N E L R T R A D S A T K - K F M - I M I G M N Y V L V . . . . . . 2383 ACGAGTACTAGTACTAGTCTTGAGTCGAATATCGTTGATGTTTGGGATCATTTTGAACAA T S T S T S L E S N I V D V W D H F E Q R V L V L V L S R I S L M F G I I L N K H E Y - Y - S - V E Y R - C L G S F - T . . . . . . 2443 GAAACATCATTCCATTACCTGAATTTTGTACTTGCCAAACCACCCTGCCTTTTCGAAAAG E T S F H Y L N F V L A K P P C L F E K K H H S I T - I L Y L P N H P A F S K R R N I I P L P E F C T C Q T T L P F R K . . . . . . 2503 GATGAAAGGGATTCCAGACAAGAAGAAAGCGCTCTCATGAACAATGAAACCTCCAAGAGA D E R D S R Q E E S A L M N N E T S K R M K G I P D K K K A L S - T M K P P R E G - K G F Q T R R K R S H E Q - N L Q E . . . . 2563 AGTCAATTGGAAATCACTAAAATTTGCAAGAAGAAA S Q L E I T K I C K K K V N W K S L K F A R R K S I G N H - N L Q E E Maximal non-overlapping open reading frames (>= 64 codons): >C06HBa0158P14.1-9+_PGL-1_AGS-2_PPS_1 (2368 2598) (frame '1'; 231 bp, 77 residues) 1 TTYSCTSTST SLESNIVDVW DHFEQETSFH YLNFVLAKPP CLFEKDERDS RQEESALMNN 61 ETSKRSQLEI TKICKKK ... finished at: Mon Aug 28 22:11:03 2006 ________________________________________________________________________________ Sequence 10: C06HBa0158P14.1-10, from 1 to 12640, both strands analyzed. ... started at: Mon Aug 28 22:11:03 2006 EST library file: /tmp/cxgn-bacpublish-resources-E8LUak/sgn_ests; matching gDNA +strand ... ... found all matches, elapsed seconds = 5 ... matches indexed, elapsed seconds = 5 HitsTableSize = 3 EST library file: /tmp/cxgn-bacpublish-resources-E8LUak/sgn_ests; matching gDNA -strand ... ... found all matches, elapsed seconds = 5 ... matches indexed, elapsed seconds = 5 HitsTableSize = 0 ******************************************************************************** EST sequence 1 +strand 276 n (File: SGN-E539323+) 1 GAAAAACCAT TTTGAGAACA AAGTGAGGTA TTCCATAAAC TATACAAGAA AAATAATCTA 61 TGAAGAAAAA TAGAGTGTGA GCGATATTTT AGTAAGGTGG AAACCAAAAG AGTGTTGTTC 121 CTTTTGAGTG TGTATTAGTT ACTTTGAGTA TTGTATTCGT GACTACACAG TTTAAAATTC 181 TTTACTATAT TAATATCAGT TGCTCCTCTT GAAAAAAAAA AAAAAAAAAA AAAAAAAAAA 241 AACACAAGGG GGAGGACAAA AACAAAAATT CCTCCA Predicted gene structure (within gDNA segment 6736 to 9724): Exon 1 7841 8049 ( 209 n); cDNA 2 210 ( 209 n); score: 0.847 PPA cDNA 226 244 MATCH C06HBa0158P14.1-10+ SGN-E539323+ 0.847 209 0.757 C PGS_C06HBa0158P14.1-10+_SGN-E539323+ (7841 8049) Alignment (genomic DNA sequence = upper lines): AAAATATATT TTGAGAGCAA AGTGAAGTAT TTCATAGATT ATATAAGAAA AATAGTCTAT 7900 |||| ||| |||||| ||| ||||| |||| | |||| | | ||| |||||| |||| ||||| AAAAACCATT TTGAGAACAA AGTGAGGTAT TCCATAAACT ATACAAGAAA AATAATCTAT 61 GAAGAAAAAT AGAGTGTGAG CGATATTTTT GTAAGGTAGA AATCAAAAGA CTTTTATTCC 7960 |||||||||| |||||||||| ||||||||| ||||||| || || ||||||| | || |||| GAAGAAAAAT AGAGTGTGAG CGATATTTTA GTAAGGTGGA AACCAAAAGA GTGTTGTTCC 121 TTTTGAGTGT GTAGTAGTAA CGTTGACAAT TGTATTCGTG ACTAACCGAT GTAAAATTCC 8020 |||||||||| ||| |||| | | |||| || |||||||||| |||| | | |||||||| TTTTGAGTGT GTATTAGTTA CTTTGAGTAT TGTATTCGTG ACTACACAGT TTAAAATTCT 181 TTACTATAGT GATATTAGTT TTTCCTCTT 8049 |||||||| | |||| |||| ||||||| TTACTATATT AATATCAGTT GCTCCTCTT 210 hqPGS_C06HBa0158P14.1-10+_SGN-E539323+ (7841 8049) ******************************************************************************** EST sequence 3 +strand 208 n (File: SGN-E283948+) 1 AAAAACCATT TTGAGAACAA AGTGAGGTAT TCCATAAACT ATACAAGAAA AATAATCTAT 61 GAAGAAAAAT AGAGTGTGAG CGATATTTTA GTAAGGTGGA AACCAAAAGA GTGTTGTTCC 121 TTTTGAGTGT GTATTAGTTA CTTTGAGTAT TGTATTCGTG ACTACACAGT TTAAAACTCT 181 TTACTATATT AATATCAGTT GCTCCTCT Predicted gene structure (within gDNA segment 6746 to 9054): Exon 1 7841 8048 ( 208 n); cDNA 1 208 ( 208 n); score: 0.841 MATCH C06HBa0158P14.1-10+ SGN-E283948+ 0.841 208 1.000 C PGS_C06HBa0158P14.1-10+_SGN-E283948+ (7841 8048) Alignment (genomic DNA sequence = upper lines): AAAATATATT TTGAGAGCAA AGTGAAGTAT TTCATAGATT ATATAAGAAA AATAGTCTAT 7900 |||| ||| |||||| ||| ||||| |||| | |||| | | ||| |||||| |||| ||||| AAAAACCATT TTGAGAACAA AGTGAGGTAT TCCATAAACT ATACAAGAAA AATAATCTAT 60 GAAGAAAAAT AGAGTGTGAG CGATATTTTT GTAAGGTAGA AATCAAAAGA CTTTTATTCC 7960 |||||||||| |||||||||| ||||||||| ||||||| || || ||||||| | || |||| GAAGAAAAAT AGAGTGTGAG CGATATTTTA GTAAGGTGGA AACCAAAAGA GTGTTGTTCC 120 TTTTGAGTGT GTAGTAGTAA CGTTGACAAT TGTATTCGTG ACTAACCGAT GTAAAATTCC 8020 |||||||||| ||| |||| | | |||| || |||||||||| |||| | | ||||| || TTTTGAGTGT GTATTAGTTA CTTTGAGTAT TGTATTCGTG ACTACACAGT TTAAAACTCT 180 TTACTATAGT GATATTAGTT TTTCCTCT 8048 |||||||| | |||| |||| |||||| TTACTATATT AATATCAGTT GCTCCTCT 208 hqPGS_C06HBa0158P14.1-10+_SGN-E283948+ (7841 8048) ******************************************************************************** EST sequence 2 +strand 453 n (File: SGN-E311797+) 1 AACCATTTTG AGAGCAAAGT GAGGTATTCC ATAGACTATA CAAGTAAATA GTCTGTGAAG 61 AAAAATAGAG TGTGAGCGAT ATTTTAGTAA GACGGAAACC AAAAGAGTGT TGTTCCTTTT 121 GAGTGTGTAG TAGTCACTTT GAGTATTGTA TTCGTGACTA CACAGTGTAA AATTCCTTAG 181 TATAGTAATA TCAATTGCTC CTCTTGGCCC GTGGTTTTTT CCCTTATTCA GAAGGGTTTC 241 CACGTAAAAT TTTTGGTGTC GTTATTTTCC CATTTTATTT CTATTACTTT TACCATATAT 301 ATTTTTGTGC TCGTCCGCGT TTTTCCAACA CCAAAGGGGT CATATGAGCG GATGCAGCAG 361 AGTAAAATAC CAAGTCTGGT CATTTGCTTC GCCAGCAGAC ATAGTAGCAA AAGACTTTGG 421 AAGATCATTA GCAACGAAAG CATGATTAAA AAG Predicted gene structure (within gDNA segment 6750 to 11544): Exon 1 7848 8049 ( 202 n); cDNA 5 205 ( 201 n); score: 0.856 Intron 1 8050 10436 (2387 n); Pd: 0.000 (s: 0.80), Pa: 0.902 (s: 0) Exon 2 10437 10445 ( 9 n); cDNA 206 214 ( 9 n); score: 0.778 MATCH C06HBa0158P14.1-10+ SGN-E311797+ 0.856 211 0.466 C PGS_C06HBa0158P14.1-10+_SGN-E311797+ (7848 8049,10437 10445) Alignment (genomic DNA sequence = upper lines): ATTTTGAGAG CAAAGTGAAG TATTTCATAG ATTATATAAG AAAAATAGTC TATGAAGAAA 7907 |||||||||| |||||||| | |||| ||||| | |||| ||| |||||||| | |||||||| ATTTTGAGAG CAAAGTGAGG TATTCCATAG ACTATACAAG -TAAATAGTC TGTGAAGAAA 63 AATAGAGTGT GAGCGATATT TTTGTAAGGT AGAAATCAAA AGACTTTTAT TCCTTTTGAG 7967 |||||||||| |||||||||| || ||||| |||| |||| ||| | || | |||||||||| AATAGAGTGT GAGCGATATT TTAGTAAGAC GGAAACCAAA AGAGTGTTGT TCCTTTTGAG 123 TGTGTAGTAG TAACGTTGAC AATTGTATTC GTGACTAACC GATGTAAAAT TCCTTACTAT 8027 |||||||||| | || |||| ||||||||| ||||||| | |||||||| |||||| ||| TGTGTAGTAG TCACTTTGAG TATTGTATTC GTGACTACAC AGTGTAAAAT TCCTTAGTAT 183 AGTGATATTA GTTTTTCCTC TTATTTAGAA GGGTTTCCAT GTAAAATTTT GGTGTCTTTA 8087 ||| |||| | || ||||| || AGTAATATCA ATTGCTCCTC TT........ .......... .......... .......... 205 TATTCCCATT TATTTCTATC ATTTGACCAT ATATATTTTT GTGTTAGTCC ATGTTTTCCC 8147 .......... .......... .......... .......... .......... .......... 205 AATAATAAAA GCATATAAAT ACTCTTTAAT ATGAATCTCA ACAAAAAGGA AAATAACAAA 8207 .......... .......... .......... .......... .......... .......... 205 CACACGACAC TCTAATGATG CTGGTACCTT AGACAAAATA GGATGCATGT ACTAGAGACC 8267 .......... .......... .......... .......... .......... .......... 205 AAGACAACCA CAGAGAATAC CTAAAATACG TAGTTTATCA AAGATAACCA TGGAGTACTG 8327 .......... .......... .......... .......... .......... .......... 205 AAGAGAAGAA AGTATGGAAT TACTTGCTCC ACCATGGATG TTTTGATGTA CCAAGGAGCA 8387 .......... .......... .......... .......... .......... .......... 205 ACAGCATTAC TCCTGATGTT GTCTTTAGCC CACTCGCATG CCAAATATTT TGTAAGTTGA 8447 .......... .......... .......... .......... .......... .......... 205 TTAATTGCTC CTGTGGACAA CATTCAAGTG GAAAAGATGA TATTTCATAA TTGTTTCTCT 8507 .......... .......... .......... .......... .......... .......... 205 CTATCAACCA TAAAGTCTTG AAAGGTAAAA GGGAAGATTA TACCTTTTGT TGCTCCTTGT 8567 .......... .......... .......... .......... .......... .......... 205 AAAGACATAG ATTTCAATGA AACAAAACCT GAGACAGAGG AAGTAAACAC AACACTTCCA 8627 .......... .......... .......... .......... .......... .......... 205 GCCCCGGATG CTTTCAGAAG GGGATAGGCT AGCTGACACA GATGGAAAAC AGATTCAAAA 8687 .......... .......... .......... .......... .......... .......... 205 TTTGTTGCCA TGACGCTGGA AAATTCTTCA GCAGTAAAAT CCACCATAGC TTTGCGAATA 8747 .......... .......... .......... .......... .......... .......... 205 TTGGTCCCCA CGTTGTTTAT CTACTGAGCA ATGAAAGAAA GCCAATTAGT TCATCTATTA 8807 .......... .......... .......... .......... .......... .......... 205 GTGCATGCAA TCCATCCAAT GAAGCTAGAT GCATCATACG TCAAAGATAT TTATTTTAAC 8867 .......... .......... .......... .......... .......... .......... 205 ACTGACGTGC CAGGTCCAAC ATTATGAATG ATTAGTTAAT TCGACATCAT GTATAACTTG 8927 .......... .......... .......... .......... .......... .......... 205 AGGAGAAAAG AGATATATGA TGCAATGTAT TATCCAACAA TGATCCCAAT ACCACAAAAC 8987 .......... .......... .......... .......... .......... .......... 205 CTCCTATTCA ATTAGTTTTT TCTTATAGGC TGCTGGAGAA ATGCCAGCTT GCCAAATTAT 9047 .......... .......... .......... .......... .......... .......... 205 TTCTAGGTTC AACACTGAAA AACAATTCAG CTGCATCTGT TGCAAATTAA CCCAATTATC 9107 .......... .......... .......... .......... .......... .......... 205 AATCTAATGT TGATATATGA GTTCTATATG CACCGGCAAC AGTCATACAT ACACTGGTGC 9167 .......... .......... .......... .......... .......... .......... 205 TAATCTGGAA TAATTATCCA AAGAAATTTG AACCGCACAC CATTGGGCCT CTAGGATTTC 9227 .......... .......... .......... .......... .......... .......... 205 TTGGTGGTAA AGGATAGTTA TCTGTAAGCT TTCTAGAAAC ATCTATGAGA CAAAATCATT 9287 .......... .......... .......... .......... .......... .......... 205 TTGTGGAAGA TAAAAAAACT TTCCATAAAT CATCTATTTG TTCCAACTGG TTGAGGTCGA 9347 .......... .......... .......... .......... .......... .......... 205 TTATATGATA TCCATTAGGC TCAAGACAGT CATAATTTTA AAAGAAAAAC TTTTCCTTAG 9407 .......... .......... .......... .......... .......... .......... 205 CCTCCAAGTC CTCCACAGAG ATATCATTGA AATATAAAGC TTTTAAGAAG TGCTTAAGCT 9467 .......... .......... .......... .......... .......... .......... 205 CATAAGATAC CTACGAGAAT AAACAATCAA AAAGAAAGAT ACCTACAAGA ATGTCGAGCT 9527 .......... .......... .......... .......... .......... .......... 205 TCCCATTGAA TGTAGACGAA ACAACCTCCA TTAACTTTTG GCGATCAACT TGAGAAGACA 9587 .......... .......... .......... .......... .......... .......... 205 CATCACATAA GGAACCAGAA ACTGTAAAGC CCTCATCTTT CCAGCTCCTC AAACAAATTT 9647 .......... .......... .......... .......... .......... .......... 205 CAAGCTCATC TTCATTACGG GCACACGTAT GCACGGTGGC TCCCAGTCCA CACAATTCCT 9707 .......... .......... .......... .......... .......... .......... 205 CCACTATCGC ATGCCTAATT ATACAACAAT TCACATTATC AAATACAAAT GCGTAGTTAT 9767 .......... .......... .......... .......... .......... .......... 205 ACTCAGATTT TCAAAAAACT AGATTTTAAA AATTAAAAAA AAAAAAAAAG CACTGGGCTT 9827 .......... .......... .......... .......... .......... .......... 205 GTGGCTATAT TGGTTATTAC TTCTGTCTCA AAACAAATGA TGATTCGGAG TACAAGATCA 9887 .......... .......... .......... .......... .......... .......... 205 AAGCATATAA CTTCATCATG TGAAATGTAC ATGAAATCCT TGGTTGTCTT GAAATAAAAT 9947 .......... .......... .......... .......... .......... .......... 205 GTATATTATA GAAACTACAC AAAAGCCACT CCACCTCAAA AAATTTACAA TAGAATCGAA 10007 .......... .......... .......... .......... .......... .......... 205 CATGTATCCT CAATCTGAAA TGTGAATACT ACTTACAAGA TCATTCCAAA AAAACTACTC 10067 .......... .......... .......... .......... .......... .......... 205 TGTCACATCT TCTACAATAG AAGTCATAAC TGAAAAAAAA TGAGTTTAAA AGGATATTAC 10127 .......... .......... .......... .......... .......... .......... 205 AAGTCACATT TATGTATTTA AATTACTAGG TAACGGTAAG GTCTATGTAC ACCTACCCAC 10187 .......... .......... .......... .......... .......... .......... 205 TTCAAACCCA CTTTTTGAGA TAACACTGTT TATGTTGTTG TTGTACATTA AAGTAATGGT 10247 .......... .......... .......... .......... .......... .......... 205 ATAACTACCC ATAGTAAATG AAATTATAAG GCTCAAAACA AAGCAAGCAA CATTCTACAG 10307 .......... .......... .......... .......... .......... .......... 205 TAATTATGTA AAAACTCAAT TAATATGTGA ATGGATATAA GATTATATAC AAGGATAATA 10367 .......... .......... .......... .......... .......... .......... 205 ACAACAATTA TGCCTCAGTC TCAAACAAGT TGGAATAGCC ACTATATGAA TCTCCATTTT 10427 .......... .......... .......... .......... .......... .......... 205 TTCATTTAGG CCCCATGG 10445 | ||| ||| .........G GCCCGTGG 214 hqPGS_C06HBa0158P14.1-10+_SGN-E311797+ (7848 8049) Total number of EST alignments reported: 3 ________________________________________________________________________________ Predicted gene locations (1) in segment 1 to 12640: PGL 1 (+ strand): 7841 8049 AGS-1 (7841 8049) SCR (e 0.856) Exon 1 7841 8049 ( 209 n); score: 0.856 PGS (7841 8049) SGN-E539323+ PGS (7841 8048) SGN-E283948+ PGS (7848 8049) SGN-E311797+ 3-phase translation of AGS-1 (+strand): . . . . . . 7841 AAAATATATTTTGAGAGCAAAGTGAAGTATTTCATAGATTATATAAGAAAAATAGTCTAT K I Y F E S K V K Y F I D Y I R K I V Y K Y I L R A K - S I S - I I - E K - S M N I F - E Q S E V F H R L Y K K N S L . . . . . . 7901 GAAGAAAAATAGAGTGTGAGCGATATTTTTGTAAGGTAGAAATCAAAAGACTTTTATTCC E E K - S V S D I F V R - K S K D F Y S K K N R V - A I F L - G R N Q K T F I P - R K I E C E R Y F C K V E I K R L L F . . . . . . 7961 TTTTGAGTGTGTAGTAGTAACGTTGACAATTGTATTCGTGACTAACCGATGTAAAATTCC F - V C S S N V D N C I R D - P M - N S F E C V V V T L T I V F V T N R C K I P L L S V - - - R - Q L Y S - L T D V K F . . . 8021 TTACTATAGTGATATTAGTTTTTCCTCTT L L - - Y - F F L Y Y S D I S F S S L T I V I L V F P L Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-1 (-strand): . . . . . . 8049 AAGAGGAAAAACTAATATCACTATAGTAAGGAATTTTACATCGGTTAGTCACGAATACAA K R K N - Y H Y S K E F Y I G - S R I Q R G K T N I T I V R N F T S V S H E Y N E E K L I S L - - G I L H R L V T N T . . . . . . 7989 TTGTCAACGTTACTACTACACACTCAAAAGGAATAAAAGTCTTTTGATTTCTACCTTACA L S T L L L H T Q K E - K S F D F Y L T C Q R Y Y Y T L K R N K S L L I S T L Q I V N V T T T H S K G I K V F - F L P Y . . . . . . 7929 AAAATATCGCTCACACTCTATTTTTCTTCATAGACTATTTTTCTTATATAATCTATGAAA K I S L T L Y F S S - T I F L I - S M K K Y R S H S I F L H R L F F L Y N L - N K N I A H T L F F F I D Y F S Y I I Y E . . . 7869 TACTTCACTTTGCTCTCAAAATATATTTT Y F T L L S K Y I T S L C S Q N I F I L H F A L K I Y F Maximal non-overlapping open reading frames (>= 64 codons): none ... finished at: Mon Aug 28 22:11:14 2006 ________________________________________________________________________________ Sequence 11: C06HBa0158P14.1-11, from 1 to 3832, both strands analyzed. ... started at: Mon Aug 28 22:11:14 2006 EST library file: /tmp/cxgn-bacpublish-resources-E8LUak/sgn_ests; matching gDNA +strand ... ... found all matches, elapsed seconds = 4 ... matches indexed, elapsed seconds = 4 HitsTableSize = 0 EST library file: /tmp/cxgn-bacpublish-resources-E8LUak/sgn_ests; matching gDNA -strand ... ... found all matches, elapsed seconds = 5 ... matches indexed, elapsed seconds = 5 HitsTableSize = 1 ******************************************************************************** EST sequence 1 -strand 367 n (File: SGN-E233534-) 1 TAAAATGTTG TCCACTTTTC TCCCTTCAGG TTCTTTGACG AGCTTCGGAC CCTTCTCCAT 61 TGGTGTGCTC ACAGTGTTGT TATTTTTCAT CTGGAATCTG TCCAGAATAT CTTGCACATA 121 TTTCTTTTGA GAAACAAAAA TACCATCAGC GGATTGATTC ACTTCTAAAC CAAGGAAATA 181 ATGCACCATG CCTCAAATCT GACGTGTCAA ACTCAACCAT CATGGACTTC TTAAAGTTTT 241 TAATCATAGA CATATTACTT CCGGTATAAA TTAAGTCATC CACATATAAA CACACCATTA 301 AGACCCCTAC ACATTCTCTT TTTATGTAAA GAGTATGTTC ATTTGTACAC TTTCGAAATC 361 CCTCCTT Predicted gene structure (within gDNA segment 382 to 1958): Exon 1 992 1358 ( 367 n); cDNA 1 367 ( 367 n); score: 1.000 MATCH C06HBa0158P14.1-11+ SGN-E233534- 1.000 367 1.000 C PGS_C06HBa0158P14.1-11+_SGN-E233534- (992 1358) Alignment (genomic DNA sequence = upper lines): TAAAATGTTG TCCACTTTTC TCCCTTCAGG TTCTTTGACG AGCTTCGGAC CCTTCTCCAT 1051 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAAAATGTTG TCCACTTTTC TCCCTTCAGG TTCTTTGACG AGCTTCGGAC CCTTCTCCAT 60 TGGTGTGCTC ACAGTGTTGT TATTTTTCAT CTGGAATCTG TCCAGAATAT CTTGCACATA 1111 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGTGTGCTC ACAGTGTTGT TATTTTTCAT CTGGAATCTG TCCAGAATAT CTTGCACATA 120 TTTCTTTTGA GAAACAAAAA TACCATCAGC GGATTGATTC ACTTCTAAAC CAAGGAAATA 1171 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTCTTTTGA GAAACAAAAA TACCATCAGC GGATTGATTC ACTTCTAAAC CAAGGAAATA 180 ATGCACCATG CCTCAAATCT GACGTGTCAA ACTCAACCAT CATGGACTTC TTAAAGTTTT 1231 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGCACCATG CCTCAAATCT GACGTGTCAA ACTCAACCAT CATGGACTTC TTAAAGTTTT 240 TAATCATAGA CATATTACTT CCGGTATAAA TTAAGTCATC CACATATAAA CACACCATTA 1291 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAATCATAGA CATATTACTT CCGGTATAAA TTAAGTCATC CACATATAAA CACACCATTA 300 AGACCCCTAC ACATTCTCTT TTTATGTAAA GAGTATGTTC ATTTGTACAC TTTCGAAATC 1351 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGACCCCTAC ACATTCTCTT TTTATGTAAA GAGTATGTTC ATTTGTACAC TTTCGAAATC 360 CCTCCTT 1358 ||||||| CCTCCTT 367 hqPGS_C06HBa0158P14.1-11+_SGN-E233534- (992 1358) Total number of EST alignments reported: 1 ________________________________________________________________________________ Predicted gene locations (1) in segment 1 to 3832: PGL 1 (+ strand): 992 1358 AGS-1 (992 1358) SCR (e 1.000) Exon 1 992 1358 ( 367 n); score: 1.000 PGS (992 1358) SGN-E233534- 3-phase translation of AGS-1 (+strand): . . . . . . 992 TAAAATGTTGTCCACTTTTCTCCCTTCAGGTTCTTTGACGAGCTTCGGACCCTTCTCCAT - N V V H F S P F R F F D E L R T L L H K M L S T F L P S G S L T S F G P F S I K C C P L F S L Q V L - R A S D P S P . . . . . . 1052 TGGTGTGCTCACAGTGTTGTTATTTTTCATCTGGAATCTGTCCAGAATATCTTGCACATA W C A H S V V I F H L E S V Q N I L H I G V L T V L L F F I W N L S R I S C T Y L V C S Q C C Y F S S G I C P E Y L A H . . . . . . 1112 TTTCTTTTGAGAAACAAAAATACCATCAGCGGATTGATTCACTTCTAAACCAAGGAAATA F L L R N K N T I S G L I H F - T K E I F F - E T K I P S A D - F T S K P R K - I S F E K Q K Y H Q R I D S L L N Q G N . . . . . . 1172 ATGCACCATGCCTCAAATCTGACGTGTCAAACTCAACCATCATGGACTTCTTAAAGTTTT M H H A S N L T C Q T Q P S W T S - S F C T M P Q I - R V K L N H H G L L K V F N A P C L K S D V S N S T I M D F L K F . . . . . . 1232 TAATCATAGACATATTACTTCCGGTATAAATTAAGTCATCCACATATAAACACACCATTA - S - T Y Y F R Y K L S H P H I N T P L N H R H I T S G I N - V I H I - T H H - L I I D I L L P V - I K S S T Y K H T I . . . . . . 1292 AGACCCCTACACATTCTCTTTTTATGTAAAGAGTATGTTCATTTGTACACTTTCGAAATC R P L H I L F L C K E Y V H L Y T F E I D P Y T F S F Y V K S M F I C T L S K S K T P T H S L F M - R V C S F V H F R N . 1352 CCTCCTT P P L L P S Maximal non-overlapping open reading frames (>= 64 codons): >C06HBa0158P14.1-11+_PGL-1_AGS-1_PPS_1 (1030 1260) (frame '0'; 228 bp, 76 residues) 1 RASDPSPLVC SQCCYFSSGI CPEYLAHISF EKQKYHQRID SLLNQGNNAP CLKSDVSNST 61 IMDFLKFLII DILLPV- 3-phase translation of AGS-1 (-strand): . . . . . . 1358 AAGGAGGGATTTCGAAAGTGTACAAATGAACATACTCTTTACATAAAAAGAGAATGTGTA K E G F R K C T N E H T L Y I K R E C V R R D F E S V Q M N I L F T - K E N V - G G I S K V Y K - T Y S L H K K R M C . . . . . . 1298 GGGGTCTTAATGGTGTGTTTATATGTGGATGACTTAATTTATACCGGAAGTAATATGTCT G V L M V C L Y V D D L I Y T G S N M S G S - W C V Y M W M T - F I P E V I C L R G L N G V F I C G - L N L Y R K - Y V . . . . . . 1238 ATGATTAAAAACTTTAAGAAGTCCATGATGGTTGAGTTTGACACGTCAGATTTGAGGCAT M I K N F K K S M M V E F D T S D L R H - L K T L R S P - W L S L T R Q I - G M Y D - K L - E V H D G - V - H V R F E A . . . . . . 1178 GGTGCATTATTTCCTTGGTTTAGAAGTGAATCAATCCGCTGATGGTATTTTTGTTTCTCA G A L F P W F R S E S I R - W Y F C F S V H Y F L G L E V N Q S A D G I F V S Q W C I I S L V - K - I N P L M V F L F L . . . . . . 1118 AAAGAAATATGTGCAAGATATTCTGGACAGATTCCAGATGAAAAATAACAACACTGTGAG K E I C A R Y S G Q I P D E K - Q H C E K K Y V Q D I L D R F Q M K N N N T V S K R N M C K I F W T D S R - K I T T L - . . . . . . 1058 CACACCAATGGAGAAGGGTCCGAAGCTCGTCAAAGAACCTGAAGGGAGAAAAGTGGACAA H T N G E G S E A R Q R T - R E K S G Q T P M E K G P K L V K E P E G R K V D N A H Q W R R V R S S S K N L K G E K W T . 998 CATTTTA H F I L T F Maximal non-overlapping open reading frames (>= 64 codons): >C06HBa0158P14.1-11-_PGL-1_AGS-1_PPS_1 (1358 1137) (frame '1'; 219 bp, 73 residues) 1 KEGFRKCTNE HTLYIKRECV GVLMVCLYVD DLIYTGSNMS MIKNFKKSMM VEFDTSDLRH 61 GALFPWFRSE SIR- >C06HBa0158P14.1-11-_PGL-1_AGS-1_PPS_2 (1183 992) (frame '2'; 192 bp, 64 residues) 1 GMVHYFLGLE VNQSADGIFV SQKKYVQDIL DRFQMKNNNT VSTPMEKGPK LVKEPEGRKV 61 DNIL ... finished at: Mon Aug 28 22:11:23 2006 ________________________________________________________________________________ Sequence 12: C06HBa0158P14.1-12, from 1 to 1130, both strands analyzed. ... started at: Mon Aug 28 22:11:23 2006 EST library file: /tmp/cxgn-bacpublish-resources-E8LUak/sgn_ests; matching gDNA +strand ... ... found all matches, elapsed seconds = 4 ... matches indexed, elapsed seconds = 5 HitsTableSize = 0 EST library file: /tmp/cxgn-bacpublish-resources-E8LUak/sgn_ests; matching gDNA -strand ... ... found all matches, elapsed seconds = 3 ... matches indexed, elapsed seconds = 3 HitsTableSize = 0 No significant EST matches were found. ... finished at: Mon Aug 28 22:11:31 2006 ________________________________________________________________________________ Sequence 13: C06HBa0158P14.1-13, from 1 to 821, both strands analyzed. ... started at: Mon Aug 28 22:11:31 2006 EST library file: /tmp/cxgn-bacpublish-resources-E8LUak/sgn_ests; matching gDNA +strand ... ... found all matches, elapsed seconds = 3 ... matches indexed, elapsed seconds = 4 HitsTableSize = 0 EST library file: /tmp/cxgn-bacpublish-resources-E8LUak/sgn_ests; matching gDNA -strand ... ... found all matches, elapsed seconds = 3 ... matches indexed, elapsed seconds = 3 HitsTableSize = 0 No significant EST matches were found. ... finished at: Mon Aug 28 22:11:38 2006 ________________________________________________________________________________ Sequence 14: C06HBa0158P14.1-14, from 1 to 2007, both strands analyzed. ... started at: Mon Aug 28 22:11:38 2006 EST library file: /tmp/cxgn-bacpublish-resources-E8LUak/sgn_ests; matching gDNA +strand ... ... found all matches, elapsed seconds = 3 ... matches indexed, elapsed seconds = 4 HitsTableSize = 0 EST library file: /tmp/cxgn-bacpublish-resources-E8LUak/sgn_ests; matching gDNA -strand ... ... found all matches, elapsed seconds = 3 ... matches indexed, elapsed seconds = 3 HitsTableSize = 0 No significant EST matches were found. ... finished at: Mon Aug 28 22:11:45 2006 ________________________________________________________________________________ Sequence 15: C06HBa0158P14.1-15, from 1 to 1228, both strands analyzed. ... started at: Mon Aug 28 22:11:45 2006 EST library file: /tmp/cxgn-bacpublish-resources-E8LUak/sgn_ests; matching gDNA +strand ... ... found all matches, elapsed seconds = 4 ... matches indexed, elapsed seconds = 4 HitsTableSize = 0 EST library file: /tmp/cxgn-bacpublish-resources-E8LUak/sgn_ests; matching gDNA -strand ... ... found all matches, elapsed seconds = 4 ... matches indexed, elapsed seconds = 4 HitsTableSize = 0 No significant EST matches were found. ... finished at: Mon Aug 28 22:11:53 2006 ________________________________________________________________________________ Sequence 16: C06HBa0158P14.1-16, from 1 to 9099, both strands analyzed. ... started at: Mon Aug 28 22:11:53 2006 EST library file: /tmp/cxgn-bacpublish-resources-E8LUak/sgn_ests; matching gDNA +strand ... ... found all matches, elapsed seconds = 4 ... matches indexed, elapsed seconds = 5 HitsTableSize = 42 EST library file: /tmp/cxgn-bacpublish-resources-E8LUak/sgn_ests; matching gDNA -strand ... ... found all matches, elapsed seconds = 3 ... matches indexed, elapsed seconds = 3 HitsTableSize = 37 ******************************************************************************** EST sequence 10 -strand 750 n (File: SGN-E379112-) 1 TAAAATGTAT GTATATTGCA TAATTATAAG TGTATGGCAA GAATATATAT GTTTTTGTCT 61 CGCTTTATAC AAAAACAAAA ANCACAATAT ATACACTTCT GTTGTATAAA GTTAGAGAAA 121 ATTGTATTTC ACTGCAATTA TATAATTCAC AATTGTATAA TTCGTTGGCC TTTTTCTCTG 181 CAATATTTGA AGTAAAATGT TTGTAATTTG TATAATTAAG TGTATAACAC GAAGATATAT 241 ATTTTTACAT GTGTATATAC AATTTTCTCT CGCTTTATAC AAAATAGAAA CAGAATTTAT 301 ACACTTCTGT GTATATAGCG AGATAGGCGA GCGAGAATGG AGAGTGGCGA GCGAGATTTT 361 TGGGAGGGAG ACGCCTGACA AACTTTAGCT AACGTTTGCT ATGGAGCACA ATTAAATCAA 421 ACTCTAGCTA CTCCATTTAG TTAGATTACT AGTTTGCTAT TATATACAAT TTTCCCAAGA 481 GCTTGTATAA AATGGAGAGA AGGAAAAAGA TTTAGAATTA TCGCTTGTGA ATGACAAGAA 541 AAGATTGCAA AATAAGAATT TAGTTGTTTT GCTTTAATAA GTTCCTTAAT CATTTCATTA 601 GGGGTGTAAT AATAGAATAA GAAAAGGGGC TTGAAATTCA GCTATAAACA ACCAGGGCAT 661 AGGTAACGTG TATACTTGAT GTTATAGGTG AGATTTCAGC TTCTCAATTT CGTCTAATTA 721 ACGGAATATA TATATATATA TATTCCCACA Predicted gene structure (within gDNA segment 9099 to 3626): Exon 1 9099 9050 ( 50 n); cDNA 151 198 ( 48 n); score: 0.640 Intron 1 9049 8102 ( 948 n); Pd: 0.000 (s: 0.64), Pa: 0.000 (s: 0.72) Exon 2 8101 7990 ( 112 n); cDNA 199 307 ( 109 n); score: 0.799 Intron 2 7989 7831 ( 159 n); Pd: 0.000 (s: 0.87), Pa: 0.000 (s: 0.70) Exon 3 7830 7649 ( 182 n); cDNA 308 483 ( 176 n); score: 0.791 Intron 3 7648 6797 ( 852 n); Pd: 0.000 (s: 0.74), Pa: 0.982 (s: 0) Exon 4 6796 6761 ( 36 n); cDNA 484 519 ( 36 n); score: 0.583 Intron 4 6760 6433 ( 328 n); Pd: 0.000 (s: 0), Pa: 0.930 (s: 0) Exon 5 6432 6403 ( 30 n); cDNA 520 547 ( 28 n); score: 0.667 Intron 5 6402 5779 ( 624 n); Pd: 0.000 (s: 0), Pa: 0.961 (s: 0) Exon 6 5778 5774 ( 5 n); cDNA 548 552 ( 5 n); score: 0.800 Intron 6 5773 4387 (1387 n); Pd: 0.000 (s: 0), Pa: 0.795 (s: 0) Exon 7 4386 4362 ( 25 n); cDNA 553 575 ( 23 n); score: 0.720 MATCH C06HBa0158P14.1-16- SGN-E379112- 0.772 440 0.587 C PGS_C06HBa0158P14.1-16-_SGN-E379112- (9099 9050,8101 7990,7830 7649,6796 6761,6432 6403,5778 5774,4386 4362) Alignment (genomic DNA sequence = upper lines): AAATTTATAA TTTATAATAT TTTTTTTATT TAAATTTTTT AATTTAAAAT ATCAAATTAA 9040 || | ||||| || | ||||| | | ||| ||| || |||||| AATTGTATAA TTCGTTGGCC TTTTTCT-CT GCAATATTTG AA-GTAAAAT .......... 198 TATAATCTAT TTTAACTTTA AAAAATAATA AATTTAACTT TCGAAAAATA TAATATAACA 8980 .......... .......... .......... .......... .......... .......... 198 ACTAAAAAAA ACCAATGAAA TAACATTCAT TAAAGTTATA GCAGTGTATT TTATTTTACC 8920 .......... .......... .......... .......... .......... .......... 198 TGCTCCTTAT TGTAAAAGCA ATTTATTTTT TTACATTTGT TCATAAAAAA AATAATTTAT 8860 .......... .......... .......... .......... .......... .......... 198 TACTAGTTCT TTTCAACAGT TTATATATCA AATTTAAGAA AAAAGGTAAT GGATCGTTAT 8800 .......... .......... .......... .......... .......... .......... 198 AGAGGCCCCT TTAATTTCAG CCCCCTATTT ATTTATTTTT ACATATGTAT ACATTATACT 8740 .......... .......... .......... .......... .......... .......... 198 CTTTTGTTTT AATGTATATA ATGATGTTTT AATTTTATGA GTCAAATGAG TTACCTTTTA 8680 .......... .......... .......... .......... .......... .......... 198 CTATAATATT TTATATTATT AACTATTGTG ACTTCAATAC TTATTATATA GTTTCAAACA 8620 .......... .......... .......... .......... .......... .......... 198 TATAAATTTT ATTTTTAAAA ATTTATATTT AAGCATACAA TCAAAGTTCA AAAGTTCTTA 8560 .......... .......... .......... .......... .......... .......... 198 TCCCCAAAAG TGAAAAATAA CATATAATTC GATATACAGA GAGTATTTAA ATTTGGGCAA 8500 .......... .......... .......... .......... .......... .......... 198 CTTTCACATA TAGCAAATAA AAAATTCATA TTTGTATGCT ATAGCAAAGT TTGCATAATT 8440 .......... .......... .......... .......... .......... .......... 198 GCGCTCAATA GCAAACATTG AAACTGTATA ATTCGCTATA CATATACATT TGAAGCAAAT 8380 .......... .......... .......... .......... .......... .......... 198 TGTATAAAAC AGAGTGCATA AAACAAGAAA GAGAAAGACA CTTGGGCAGA GAACTGTATA 8320 .......... .......... .......... .......... .......... .......... 198 AAAATGATAT GTATAAAACG AATTGTATTA TTATAAGTGT ATAGAATAAT TATATACAAT 8260 .......... .......... .......... .......... .......... .......... 198 TTGAATTTGT ATAAAATGAG AAAGAGAGAA AGACAAAAGA GACTTGACAA GGAATATACA 8200 .......... .......... .......... .......... .......... .......... 198 ATTGAATCGA ATTGTATAAA ATGAGAAAGA GAGAAATTAG ATACAATTTG AAAATTGTAT 8140 .......... .......... .......... .......... .......... .......... 198 AAAATGAGAA AGAGAGAAAG GCAAAAGAAA TTGCGCAGGG GAGTATTTAT TGTATAATTA 8080 | ||| | | ||||||||| .......... .......... .......... ........GT TTGTAA-T-T TGTATAATT- 217 TAAGTGTATA GGACGAAAAT ATATGTACTT GCAAGTGTAT ATACAATTTT CTCACGCTTT 8020 ||||||||| ||||| || |||| | || || |||||| |||||||||| ||| |||||| -AAGTGTATA ACACGAAGAT ATATATTTTT ACATGTGTAT ATACAATTTT CTCTCGCTTT 276 ATAC-AAACA AAAACACAAT TTATACACTT CACTTCTGTT TGTATAAGTG AGAAAGGCGG 7961 |||| ||| | ||||| ||| |||||||||| | ATACAAAATA GAAACAGAAT TTATACACTT C......... .......... .......... 307 GGGTGGCGAG CAAGATTTGG GAGAGTGGCG AGCGAGATCT GGAAGAGGGG AGAGAGGAGA 7901 .......... .......... .......... .......... .......... .......... 307 ACAAAAATAT ATGTATTTAT ACAATTTTCT CTACTTTATC AATTATAAAC AATTTTTATA 7841 .......... .......... .......... .......... .......... .......... 307 CACTTCTGTT TGTATAAAAA GTGAGGAAGC GAACGAGAGA TTAGAGGAGA GTAGCGAGCG 7781 ||| || | | | ||| || | |||| || | ||||| || ||||||| .......... TGTGTATATA GCGAGATAG- G--CGAGCGA -GAATGGAGA GTGGCGAGCG 353 AGATATTTGG GAGAGAGGCG CCTGACAATT TTTTTGCAAA CGTTAGCTAT GGAGCACAAT 7721 |||| ||||| ||| ||| || |||||||| ||| || || |||| ||||| |||||||||| AGATTTTTGG GAGGGAGACG CCTGACAA-A CTTTAGCTAA CGTTTGCTAT GGAGCACAAT 412 TAAATCAAAC CCTAGCTACT CCATTTATTT TAGGTTATTA GTTTGCTATT ATATAAGATT 7661 |||||||||| ||||||||| ||||||| | ||| ||| || |||||||||| ||||| ||| TAAATCAAAC TCTAGCTACT CCATTTA-GT TAGATTACTA GTTTGCTATT ATATACAATT 471 TTGTCTATAT AATTTTTTTT CATACTATAG GTAAACTTCT TTGATTGTTA GATTTAAAAT 7601 || | | | TTCCCAAGAG CT........ .......... .......... .......... .......... 483 CTTGAAATAA AATAGGTACC TTCTACATTA TATAAATATG ACCCTAATGC TACAAAATTA 7541 .......... .......... .......... .......... .......... .......... 483 TTTGGCTAAA AAATTATTTG GTCCAATATA TTCCTATTTG TTGAAATGAT TTCCCTACTT 7481 .......... .......... .......... .......... .......... .......... 483 AATAATTGAC ACTAGATCTT GCCTTGTGTT ATAATTGAAG ATATATTTGA TACCACATGC 7421 .......... .......... .......... .......... .......... .......... 483 CTATTTTAAT CAAAGTTGTA TTTAAAATTC TGATTCCACG TTCGTTACAG TTAAACTTTT 7361 .......... .......... .......... .......... .......... .......... 483 TTAGTTTATT TTTAAAAAAA AGATAGTTTA TTAAGGATTT TCTTCCCTTC TTCTACCTTG 7301 .......... .......... .......... .......... .......... .......... 483 TTGTCCGATA ATATATAGCT TGTAACGACC TGTTTAGTCA TTTTGAGCAG CAGATTTTAT 7241 .......... .......... .......... .......... .......... .......... 483 TTCTGGAAAA ATAGGCTGAG GCAACGGATC CCACGACGGA CCGTCATGGG CACGACGGAC 7181 .......... .......... .......... .......... .......... .......... 483 CGTCGCAGGG TCTCGTTTCA AAACACTTAG AAAATCTGAA ATTGGGTACT GAAAATCGAC 7121 .......... .......... .......... .......... .......... .......... 483 TCTCTGAACT TCGTGACGGA ATGGCAGGAC GGACCGTCAC AGGCGTGACG GACCGTCACA 7061 .......... .......... .......... .......... .......... .......... 483 GAGCCTTCAG TGAAAACCCA TTCTCTGAAC CTTACGACGA CTTGCAGGAC GGACCGTCGT 7001 .......... .......... .......... .......... .......... .......... 483 AGGCACGACG GGCCGTCGCA GGCTACGCAA TCCCAGGCTG TGTCGGATTT CTGTTAATTT 6941 .......... .......... .......... .......... .......... .......... 483 ATTTAAGGGG CATTTTGGAC TATTTCCTAC TTTAATTATA AAGTGGTGGG TTAATGTTAA 6881 .......... .......... .......... .......... .......... .......... 483 TAAGTCTAAT TACTTGGGGG TTAAAAGAGG TAACCTTAAG TTAACTAGTG GGTTATCTTT 6821 .......... .......... .......... .......... .......... .......... 483 TATACTTAAT TATATGTTAA TTAGGGTAAA AGAAAGAGGG TTGGAATAAG AAAAATAAGA 6761 ||| | | | ||| | |||| ||| | | || .......... .......... ....TGTATA AAATGGAGAG AAGGAAAAAG ATTTAGAATT 519 AAGAACAAAG AGAGACAGAA AAAGAAAGAA AACGAGTAGA GAGAGAGAGA AACGAAGGGA 6701 .......... .......... .......... .......... .......... .......... 519 ATATCAAGGA TTTTGAGAAG ATAGCTTGTT GATCGCAATT CTTCGGTGGA GGTAGGTTAT 6641 .......... .......... .......... .......... .......... .......... 519 GGTTATTTCA TGCTATTCGT AGTAAACTCT TAATAGCGAA TGATATGTGT TAGTAGTATT 6581 .......... .......... .......... .......... .......... .......... 519 GTGAACCTTC TATATGCTTA ATTGTATGCT TGCATGAATG ATGTGATTAT GTAATTATGA 6521 .......... .......... .......... .......... .......... .......... 519 ATAAATAAGC ATGATGAAGC TATTTAATCC CAAATCTTGA AAAGAAACCA TAATCTACTT 6461 .......... .......... .......... .......... .......... .......... 519 TGTTAATGAT GATGCCTTGG TATAAAAGAA GGCTTGATGA ATGAAAGTAG TGAGATTAGG 6401 | ||||| ||| |||| | | ||||| .......... .......... ........AT CGCTTG-TGA ATGACAAGA- AAAGATTG.. 547 GGATCGGGTG CCACGTTCCG GTACCAGGAT AGTATATGAG GATCGGAGTA TCACGTTCCG 6341 .......... .......... .......... .......... .......... .......... 547 ACACCAGGAT AATATATGGA TCGGGTGCCA CGTTCCGGTA CCAGGATAGA ATATGGATCG 6281 .......... .......... .......... .......... .......... .......... 547 GGTGTCACGT TCCAACACCA GGATAGAATA TGGATCGGGT GCCACGTTCC GGTACCAGGG 6221 .......... .......... .......... .......... .......... .......... 547 TAGAATATGG ATCGGGTGTC ACGTTCCGAC ACCAGGATAG AATATGGATC GGGTGCCACG 6161 .......... .......... .......... .......... .......... .......... 547 TTCCGGTACC AGGATAATAT ATGAGGATCG GAGTGTCACG TTCCGACACC AGGATAGTAT 6101 .......... .......... .......... .......... .......... .......... 547 ATTGAGGAGC GGAGTGTCAC GTACCGACAC GAGGGGAATA AAGATAATGA ATTTTGAAAG 6041 .......... .......... .......... .......... .......... .......... 547 ATGTTAATAT GTTCAATCTA ATGAACCTAA TTCCCAAATG AGTATGATGA GGAGGCGTGA 5981 .......... .......... .......... .......... .......... .......... 547 GTCCTCATTG ATGTGCTTGG TGTTGCAACC AAGGGTTATG GTAACTGTAA ATGCTGCATG 5921 .......... .......... .......... .......... .......... .......... 547 CTAAGGATAT TAGTTGATTT TATGATATTG CTTAACATAT ACTGTTTTCT ATTTTGAGTT 5861 .......... .......... .......... .......... .......... .......... 547 GGCCGATGAT ATCTACTCAG TACCCGTGTT TTGTACTGAC CCCTACTTTT ATGTTTTCTT 5801 .......... .......... .......... .......... .......... .......... 547 CTTTGTTATT TGTGGAGTGC AGCAAACGTG CCGTCGTCTT CAACTCAACA GTAATTCAAG 5741 |||| .......... .......... ..CAAAA... .......... .......... .......... 552 CCAGTCTTTA CTACACCGGA AATTCAGGGT GAGCTAATGT TTCTAGCTTG GACTGGATCT 5681 .......... .......... .......... .......... .......... .......... 552 TTTTCTTCAA GTCTTGATGC CTTGAACTTC CGGCATGGAC TAGCTTTTAC TTGTTTTAGC 5621 .......... .......... .......... .......... .......... .......... 552 TTTTAGAATA CTCTTAGTTT AGTAATTGAT CATAGATGTT CTTGTGATGA TGACTTCCAG 5561 .......... .......... .......... .......... .......... .......... 552 ATTTTGGGAA ATAATAATAG TTATTGATTT TATTAATGAG TTTAAGTCTT CCGCATTATT 5501 .......... .......... .......... .......... .......... .......... 552 TACTGTTGAT ATTATATTGA AATGTTAGAG TTTAGATTGG TTGGTTCGCT CACATAGGAG 5441 .......... .......... .......... .......... .......... .......... 552 GGTAAGTGTG GGTGCCAGTC ACGGTCCGGA TTTGGGTCGT GACATAGCTC AATGATTATA 5381 .......... .......... .......... .......... .......... .......... 552 AAATGATATA AGTGAGCAGC TAATGGCAAT TACATAAATC AACAGATATG TTTTAGAAAC 5321 .......... .......... .......... .......... .......... .......... 552 TCACCTCTCG AACTTACGAA AATCGTATCA TCTAAAATTG TGAATTCGTC ACTGCAAACA 5261 .......... .......... .......... .......... .......... .......... 552 ACTCGTGTCT CCTCTATTCG CCTCCATCAC CATCCATATC ATGTATATGA GCAATGGCGA 5201 .......... .......... .......... .......... .......... .......... 552 TGATCGCAAC GCCGGCTGCT CCCATATCGT TGCTCCCATG ATTGTTAGCT ACCTTATGGT 5141 .......... .......... .......... .......... .......... .......... 552 TTACATGATC AGTATGACCA TAACCAACCA TGTTGTTAAA GCCTTTACTT TTTTGAGTTG 5081 .......... .......... .......... .......... .......... .......... 552 GTTTTGAATA TTGTGGAACT CTTTCTTTTG GTGTTGACTT GTGCCTTTCT TTCTTAGTTT 5021 .......... .......... .......... .......... .......... .......... 552 TGTTGTTCTT CCAATTAATC ATGCAAAAAC AACAATTCTT GATCCCCATA TTAAAGACAT 4961 .......... .......... .......... .......... .......... .......... 552 GCACAATAAG GAATTTGCTT AATGATGAAG TGAAAAGGAC AAAGGAAATT TCTTCTTCTT 4901 .......... .......... .......... .......... .......... .......... 552 TTTGATTTAG TATACAATGT TGGATTAGTG AGAAATGGAG CCTAATTGAC ATTATGGCAA 4841 .......... .......... .......... .......... .......... .......... 552 GAACATGGCT AATAAACATG TCTATAACTA CTCATCTAGG CTGGCTTTCT CTATTAAAAA 4781 .......... .......... .......... .......... .......... .......... 552 GTTGTGTGGT CCAAACCTAT TTGTGTATGA ATATTGGTAC ACGACGAACA AATCTTAGAG 4721 .......... .......... .......... .......... .......... .......... 552 GTAATAAATA TATACATTAA CAAAAAGTGA TTTAACTTTT ATTGGTATTA GTTAATTGTT 4661 .......... .......... .......... .......... .......... .......... 552 ACTGAATTCG GTGTTGCTAT AGGCTTTAGA GACATTTACA AAAAATGTTA AAATGCCACT 4601 .......... .......... .......... .......... .......... .......... 552 GAATATATAT TTTTAACAAT AAGTATTCTA TTGTTGTTAA TTAATTTATT ATAAAGATCT 4541 .......... .......... .......... .......... .......... .......... 552 TTTTTTTTTT TGTAATAGTA CCAAACCCTA GTATTCACAC ATTGAGTGGC CATATTAAAA 4481 .......... .......... .......... .......... .......... .......... 552 CGTCCAATGA TTTTTCGGCC TATCATATTA TTTTCTTACA TATTAAGCTT CTTCAATTGA 4421 .......... .......... .......... .......... .......... .......... 552 AGTTAATGCT ATTACCTTTC TCCTACTTCG ATAGGAAGCA GTGACTTTGT TTTCGCTTT 4362 ||| | | | |||| ||| ||||| .......... .......... .......... ....TAAGAA TTTA-GTTGT TTT-GCTTT 575 hqPGS_C06HBa0158P14.1-16-_SGN-E379112- (8101 7990,7830 7649,6796 6761,6432 6403,5778 5774,4386 4362) ******************************************************************************** EST sequence 36 -strand 651 n (File: SGN-E394141-) 1 CAATTATATA ATTCACAATT GTATAATTCG TTGGCCTTTT TCTTTGCAAT ATTTGAAGTA 61 AAATGTTTGT AATTTGTATA ATTAAGTGTA TAACACGAAG ATATATATTT TTACATGTGT 121 ATATACAATT TTCTCTCGCT TTATACAAAA TAGAAACAGA ATTTATACAC TTCTGTGTAT 181 ATAGCGAGAT AGGCGAGCGA GAATGGAGAG TGGCGAGCGA GATTTTTGGG AGGGAGACGC 241 CTGACAAACT TTAGCTAACG TTTGCTATGG AGCACAATTA AATCAAACTC TAGCTACTCC 301 ATTTAGTTAG ATTACTAGTT TGCTATTATA TACAATTTTC CCAAGAGCTT GTATAAAATG 361 GAGAGAAGGA AAAAGATTTA GAATTATCGC TTGTGAATGA CAAGAAAAGA TTGCAAAATA 421 AGAATTTAGT TGTTTTGCTT TAATAAGTTC CTTAATCATT TCATTAGGGG TGTAATAATA 481 GAATAAGAAA AGGGGCTTGA AATTCAGCTA TAAACAACCA GGGCATAGGT AACGTGTATA 541 CTTGATGTTA TAGGTGAAAT TTCAGCTTCT CAATTTCGAT TAATTAACAT TAAAAAGATA 601 TATATATATT CCCCCAGTAT CACATTGATA GAAAAAAAAA AAAAAAAAAA A Predicted gene structure (within gDNA segment 9099 to 3276): Exon 1 8090 7990 ( 101 n); cDNA 74 173 ( 100 n); score: 0.837 Intron 1 7989 7831 ( 159 n); Pd: 0.000 (s: 0.87), Pa: 0.000 (s: 0.70) Exon 2 7830 7649 ( 182 n); cDNA 174 349 ( 176 n); score: 0.791 Intron 2 7648 6797 ( 852 n); Pd: 0.000 (s: 0.74), Pa: 0.982 (s: 0) Exon 3 6796 6761 ( 36 n); cDNA 350 385 ( 36 n); score: 0.583 Intron 3 6760 6433 ( 328 n); Pd: 0.000 (s: 0), Pa: 0.930 (s: 0) Exon 4 6432 6403 ( 30 n); cDNA 386 413 ( 28 n); score: 0.667 Intron 4 6402 5779 ( 624 n); Pd: 0.000 (s: 0), Pa: 0.961 (s: 0) Exon 5 5778 5774 ( 5 n); cDNA 414 418 ( 5 n); score: 0.800 Intron 5 5773 4387 (1387 n); Pd: 0.000 (s: 0), Pa: 0.795 (s: 0) Exon 6 4386 4362 ( 25 n); cDNA 419 441 ( 23 n); score: 0.720 PPA cDNA 632 651 MATCH C06HBa0158P14.1-16- SGN-E394141- 0.807 379 0.582 C PGS_C06HBa0158P14.1-16-_SGN-E394141- (8090 7990,7830 7649,6796 6761,6432 6403,5778 5774,4386 4362) Alignment (genomic DNA sequence = upper lines): TTGTATAATT ATAAGTGTAT AGGACGAAAA TATATGTACT TGCAAGTGTA TATACAATTT 8031 |||||||| | ||||||||| | ||||| | ||||| | | | || ||||| |||||||||| TTGTATAA-T -TAAGTGTAT AACACGAAGA TATATATTTT TACATGTGTA TATACAATTT 131 TCTCACGCTT TATAC-AAAC AAAAACACAA TTTATACACT TCACTTCTGT TTGTATAAGT 7972 |||| ||||| ||||| ||| | ||||| || |||||||||| || TCTCTCGCTT TATACAAAAT AGAAACAGAA TTTATACACT TC........ .......... 173 GAGAAAGGCG GGGGTGGCGA GCAAGATTTG GGAGAGTGGC GAGCGAGATC TGGAAGAGGG 7912 .......... .......... .......... .......... .......... .......... 173 GAGAGAGGAG AACAAAAATA TATGTATTTA TACAATTTTC TCTACTTTAT CAATTATAAA 7852 .......... .......... .......... .......... .......... .......... 173 CAATTTTTAT ACACTTCTGT TTGTATAAAA AGTGAGGAAG CGAACGAGAG ATTAGAGGAG 7792 ||| || | || ||| || | |||| | | | |||| .......... .......... .TGTGTATAT AGCGAGATAG -G--CGAGCG A-GAATGGAG 208 AGTAGCGAGC GAGATATTTG GGAGAGAGGC GCCTGACAAT TTTTTTGCAA ACGTTAGCTA 7732 ||| |||||| ||||| |||| |||| ||| | ||||||||| ||| || | ||||| |||| AGTGGCGAGC GAGATTTTTG GGAGGGAGAC GCCTGACAA- ACTTTAGCTA ACGTTTGCTA 267 TGGAGCACAA TTAAATCAAA CCCTAGCTAC TCCATTTATT TTAGGTTATT AGTTTGCTAT 7672 |||||||||| |||||||||| | |||||||| |||||||| |||| ||| | |||||||||| TGGAGCACAA TTAAATCAAA CTCTAGCTAC TCCATTTA-G TTAGATTACT AGTTTGCTAT 326 TATATAAGAT TTTGTCTATA TAATTTTTTT TCATACTATA GGTAAACTTC TTTGATTGTT 7612 |||||| || ||| | | | TATATACAAT TTTCCCAAGA GCT....... .......... .......... .......... 349 AGATTTAAAA TCTTGAAATA AAATAGGTAC CTTCTACATT ATATAAATAT GACCCTAATG 7552 .......... .......... .......... .......... .......... .......... 349 CTACAAAATT ATTTGGCTAA AAAATTATTT GGTCCAATAT ATTCCTATTT GTTGAAATGA 7492 .......... .......... .......... .......... .......... .......... 349 TTTCCCTACT TAATAATTGA CACTAGATCT TGCCTTGTGT TATAATTGAA GATATATTTG 7432 .......... .......... .......... .......... .......... .......... 349 ATACCACATG CCTATTTTAA TCAAAGTTGT ATTTAAAATT CTGATTCCAC GTTCGTTACA 7372 .......... .......... .......... .......... .......... .......... 349 GTTAAACTTT TTTAGTTTAT TTTTAAAAAA AAGATAGTTT ATTAAGGATT TTCTTCCCTT 7312 .......... .......... .......... .......... .......... .......... 349 CTTCTACCTT GTTGTCCGAT AATATATAGC TTGTAACGAC CTGTTTAGTC ATTTTGAGCA 7252 .......... .......... .......... .......... .......... .......... 349 GCAGATTTTA TTTCTGGAAA AATAGGCTGA GGCAACGGAT CCCACGACGG ACCGTCATGG 7192 .......... .......... .......... .......... .......... .......... 349 GCACGACGGA CCGTCGCAGG GTCTCGTTTC AAAACACTTA GAAAATCTGA AATTGGGTAC 7132 .......... .......... .......... .......... .......... .......... 349 TGAAAATCGA CTCTCTGAAC TTCGTGACGG AATGGCAGGA CGGACCGTCA CAGGCGTGAC 7072 .......... .......... .......... .......... .......... .......... 349 GGACCGTCAC AGAGCCTTCA GTGAAAACCC ATTCTCTGAA CCTTACGACG ACTTGCAGGA 7012 .......... .......... .......... .......... .......... .......... 349 CGGACCGTCG TAGGCACGAC GGGCCGTCGC AGGCTACGCA ATCCCAGGCT GTGTCGGATT 6952 .......... .......... .......... .......... .......... .......... 349 TCTGTTAATT TATTTAAGGG GCATTTTGGA CTATTTCCTA CTTTAATTAT AAAGTGGTGG 6892 .......... .......... .......... .......... .......... .......... 349 GTTAATGTTA ATAAGTCTAA TTACTTGGGG GTTAAAAGAG GTAACCTTAA GTTAACTAGT 6832 .......... .......... .......... .......... .......... .......... 349 GGGTTATCTT TTATACTTAA TTATATGTTA ATTAGGGTAA AAGAAAGAGG GTTGGAATAA 6772 ||| || | ||| | |||| || .......... .......... .......... .....TGTAT AAAATGGAGA GAAGGAAAAA 374 GAAAAATAAG AAAGAACAAA GAGAGACAGA AAAAGAAAGA AAACGAGTAG AGAGAGAGAG 6712 || | || GATTTAGAAT T......... .......... .......... .......... .......... 385 AAACGAAGGG AATATCAAGG ATTTTGAGAA GATAGCTTGT TGATCGCAAT TCTTCGGTGG 6652 .......... .......... .......... .......... .......... .......... 385 AGGTAGGTTA TGGTTATTTC ATGCTATTCG TAGTAAACTC TTAATAGCGA ATGATATGTG 6592 .......... .......... .......... .......... .......... .......... 385 TTAGTAGTAT TGTGAACCTT CTATATGCTT AATTGTATGC TTGCATGAAT GATGTGATTA 6532 .......... .......... .......... .......... .......... .......... 385 TGTAATTATG AATAAATAAG CATGATGAAG CTATTTAATC CCAAATCTTG AAAAGAAACC 6472 .......... .......... .......... .......... .......... .......... 385 ATAATCTACT TTGTTAATGA TGATGCCTTG GTATAAAAGA AGGCTTGATG AATGAAAGTA 6412 | ||||| || ||||| | | .......... .......... .......... .........A TCGCTTG-TG AATGACAAGA 405 GTGAGATTAG GGGATCGGGT GCCACGTTCC GGTACCAGGA TAGTATATGA GGATCGGAGT 6352 ||||| -AAAGATTG. .......... .......... .......... .......... .......... 413 ATCACGTTCC GACACCAGGA TAATATATGG ATCGGGTGCC ACGTTCCGGT ACCAGGATAG 6292 .......... .......... .......... .......... .......... .......... 413 AATATGGATC GGGTGTCACG TTCCAACACC AGGATAGAAT ATGGATCGGG TGCCACGTTC 6232 .......... .......... .......... .......... .......... .......... 413 CGGTACCAGG GTAGAATATG GATCGGGTGT CACGTTCCGA CACCAGGATA GAATATGGAT 6172 .......... .......... .......... .......... .......... .......... 413 CGGGTGCCAC GTTCCGGTAC CAGGATAATA TATGAGGATC GGAGTGTCAC GTTCCGACAC 6112 .......... .......... .......... .......... .......... .......... 413 CAGGATAGTA TATTGAGGAG CGGAGTGTCA CGTACCGACA CGAGGGGAAT AAAGATAATG 6052 .......... .......... .......... .......... .......... .......... 413 AATTTTGAAA GATGTTAATA TGTTCAATCT AATGAACCTA ATTCCCAAAT GAGTATGATG 5992 .......... .......... .......... .......... .......... .......... 413 AGGAGGCGTG AGTCCTCATT GATGTGCTTG GTGTTGCAAC CAAGGGTTAT GGTAACTGTA 5932 .......... .......... .......... .......... .......... .......... 413 AATGCTGCAT GCTAAGGATA TTAGTTGATT TTATGATATT GCTTAACATA TACTGTTTTC 5872 .......... .......... .......... .......... .......... .......... 413 TATTTTGAGT TGGCCGATGA TATCTACTCA GTACCCGTGT TTTGTACTGA CCCCTACTTT 5812 .......... .......... .......... .......... .......... .......... 413 TATGTTTTCT TCTTTGTTAT TTGTGGAGTG CAGCAAACGT GCCGTCGTCT TCAACTCAAC 5752 |||| .......... .......... .......... ...CAAAA.. .......... .......... 418 AGTAATTCAA GCCAGTCTTT ACTACACCGG AAATTCAGGG TGAGCTAATG TTTCTAGCTT 5692 .......... .......... .......... .......... .......... .......... 418 GGACTGGATC TTTTTCTTCA AGTCTTGATG CCTTGAACTT CCGGCATGGA CTAGCTTTTA 5632 .......... .......... .......... .......... .......... .......... 418 CTTGTTTTAG CTTTTAGAAT ACTCTTAGTT TAGTAATTGA TCATAGATGT TCTTGTGATG 5572 .......... .......... .......... .......... .......... .......... 418 ATGACTTCCA GATTTTGGGA AATAATAATA GTTATTGATT TTATTAATGA GTTTAAGTCT 5512 .......... .......... .......... .......... .......... .......... 418 TCCGCATTAT TTACTGTTGA TATTATATTG AAATGTTAGA GTTTAGATTG GTTGGTTCGC 5452 .......... .......... .......... .......... .......... .......... 418 TCACATAGGA GGGTAAGTGT GGGTGCCAGT CACGGTCCGG ATTTGGGTCG TGACATAGCT 5392 .......... .......... .......... .......... .......... .......... 418 CAATGATTAT AAAATGATAT AAGTGAGCAG CTAATGGCAA TTACATAAAT CAACAGATAT 5332 .......... .......... .......... .......... .......... .......... 418 GTTTTAGAAA CTCACCTCTC GAACTTACGA AAATCGTATC ATCTAAAATT GTGAATTCGT 5272 .......... .......... .......... .......... .......... .......... 418 CACTGCAAAC AACTCGTGTC TCCTCTATTC GCCTCCATCA CCATCCATAT CATGTATATG 5212 .......... .......... .......... .......... .......... .......... 418 AGCAATGGCG ATGATCGCAA CGCCGGCTGC TCCCATATCG TTGCTCCCAT GATTGTTAGC 5152 .......... .......... .......... .......... .......... .......... 418 TACCTTATGG TTTACATGAT CAGTATGACC ATAACCAACC ATGTTGTTAA AGCCTTTACT 5092 .......... .......... .......... .......... .......... .......... 418 TTTTTGAGTT GGTTTTGAAT ATTGTGGAAC TCTTTCTTTT GGTGTTGACT TGTGCCTTTC 5032 .......... .......... .......... .......... .......... .......... 418 TTTCTTAGTT TTGTTGTTCT TCCAATTAAT CATGCAAAAA CAACAATTCT TGATCCCCAT 4972 .......... .......... .......... .......... .......... .......... 418 ATTAAAGACA TGCACAATAA GGAATTTGCT TAATGATGAA GTGAAAAGGA CAAAGGAAAT 4912 .......... .......... .......... .......... .......... .......... 418 TTCTTCTTCT TTTTGATTTA GTATACAATG TTGGATTAGT GAGAAATGGA GCCTAATTGA 4852 .......... .......... .......... .......... .......... .......... 418 CATTATGGCA AGAACATGGC TAATAAACAT GTCTATAACT ACTCATCTAG GCTGGCTTTC 4792 .......... .......... .......... .......... .......... .......... 418 TCTATTAAAA AGTTGTGTGG TCCAAACCTA TTTGTGTATG AATATTGGTA CACGACGAAC 4732 .......... .......... .......... .......... .......... .......... 418 AAATCTTAGA GGTAATAAAT ATATACATTA ACAAAAAGTG ATTTAACTTT TATTGGTATT 4672 .......... .......... .......... .......... .......... .......... 418 AGTTAATTGT TACTGAATTC GGTGTTGCTA TAGGCTTTAG AGACATTTAC AAAAAATGTT 4612 .......... .......... .......... .......... .......... .......... 418 AAAATGCCAC TGAATATATA TTTTTAACAA TAAGTATTCT ATTGTTGTTA ATTAATTTAT 4552 .......... .......... .......... .......... .......... .......... 418 TATAAAGATC TTTTTTTTTT TTGTAATAGT ACCAAACCCT AGTATTCACA CATTGAGTGG 4492 .......... .......... .......... .......... .......... .......... 418 CCATATTAAA ACGTCCAATG ATTTTTCGGC CTATCATATT ATTTTCTTAC ATATTAAGCT 4432 .......... .......... .......... .......... .......... .......... 418 TCTTCAATTG AAGTTAATGC TATTACCTTT CTCCTACTTC GATAGGAAGC AGTGACTTTG 4372 ||| | | | ||| .......... .......... .......... .......... .....TAAGA ATTTA-GTTG 432 TTTTCGCTTT 4362 |||| ||||| TTTT-GCTTT 441 hqPGS_C06HBa0158P14.1-16-_SGN-E394141- (8090 7990,7830 7649,6796 6761,6432 6403,5778 5774,4386 4362) ******************************************************************************** EST sequence 22 -strand 605 n (File: SGN-E392605-) 1 AATATTTGAA GTAAAATGTT TGTAATTTGT ATAATTAAGT GTATAACACG AAGATATATA 61 TTTTTACATG TGTATATACA ATTTTCTCTC GCTTTATACA AAATAGAAAC AGAATTTATA 121 CACTTCTGTG TATATAGCGA GATAGGCGAG CGAGAATGGA GAGTGGCGAG CGAGATTTTT 181 GGGAGGGAGA CGCCTGACAA ACTTTAGCTA ACGTTTGCTA TGGAGCACAA TTAAATCAAA 241 CTCTAGCTAC TCCATTTAGT TAGATTACTA GTTTGCTATT ATATACAATT TTCCCAAGAG 301 CTTGTATAAA ATGGAGAGAA GGAAAAAGAT TTAGAATTAT CGCTTGTGAA TGACAAGAAA 361 AGATTGCAAA ATAAGAATTT AGTTGTTTTG CTTTAATAAG TTCCTTAATC ATTTCATTAG 421 GGGTGTAATA ATAGAATAAG AAAAGGGGCT TGAAATTCAG CTATAAACAA CCAGGGCATA 481 GGTAACGTGT ATACTTGATG TTATAGGTGA AATTTCAGCT TCTCAATTTC GATTAATTAA 541 CATTATAGAT ATATATATAT ATTCCCACAG TATCACATTT GATAGGAAAA AAAAAAAAAA 601 AAAAA Predicted gene structure (within gDNA segment 9099 to 3266): Exon 1 8075 7990 ( 86 n); cDNA 40 126 ( 87 n); score: 0.831 Intron 1 7989 7831 ( 159 n); Pd: 0.000 (s: 0.87), Pa: 0.000 (s: 0.70) Exon 2 7830 7649 ( 182 n); cDNA 127 302 ( 176 n); score: 0.791 Intron 2 7648 6797 ( 852 n); Pd: 0.000 (s: 0.74), Pa: 0.982 (s: 0) Exon 3 6796 6761 ( 36 n); cDNA 303 338 ( 36 n); score: 0.583 Intron 3 6760 6433 ( 328 n); Pd: 0.000 (s: 0), Pa: 0.930 (s: 0) Exon 4 6432 6403 ( 30 n); cDNA 339 366 ( 28 n); score: 0.667 Intron 4 6402 5779 ( 624 n); Pd: 0.000 (s: 0), Pa: 0.961 (s: 0) Exon 5 5778 5774 ( 5 n); cDNA 367 371 ( 5 n); score: 0.800 Intron 5 5773 4387 (1387 n); Pd: 0.000 (s: 0), Pa: 0.795 (s: 0) Exon 6 4386 4362 ( 25 n); cDNA 372 394 ( 23 n); score: 0.720 PPA cDNA 587 605 MATCH C06HBa0158P14.1-16- SGN-E392605- 0.804 364 0.602 C PGS_C06HBa0158P14.1-16-_SGN-E392605- (8075 7990,7830 7649,6796 6761,6432 6403,5778 5774,4386 4362) Alignment (genomic DNA sequence = upper lines): TGTATAGGAC GAAAATATAT GTACTTGCAA GTGTATATAC AATTTTCTCA CGCTTTATAC 8016 |||||| || ||| |||||| | || || |||||||||| ||||||||| |||||||||| TGTATAACAC GAAGATATAT ATTTTTACAT GTGTATATAC AATTTTCTCT CGCTTTATAC 99 -AAACAAAAA CACAATTTAT ACACTTCACT TCTGTTTGTA TAAGTGAGAA AGGCGGGGGT 7957 ||| | ||| || ||||||| ||||||| AAAATAGAAA CAGAATTTAT ACACTTC... .......... .......... .......... 126 GGCGAGCAAG ATTTGGGAGA GTGGCGAGCG AGATCTGGAA GAGGGGAGAG AGGAGAACAA 7897 .......... .......... .......... .......... .......... .......... 126 AAATATATGT ATTTATACAA TTTTCTCTAC TTTATCAATT ATAAACAATT TTTATACACT 7837 .......... .......... .......... .......... .......... .......... 126 TCTGTTTGTA TAAAAAGTGA GGAAGCGAAC GAGAGATTAG AGGAGAGTAG CGAGCGAGAT 7777 ||| || | || || | || | | ||| || | ||||||| | |||||||||| ......TGTG TATATAGCGA GATAG-G--C GAGCGA-GAA TGGAGAGTGG CGAGCGAGAT 176 ATTTGGGAGA GAGGCGCCTG ACAATTTTTT TGCAAACGTT AGCTATGGAG CACAATTAAA 7717 |||||||| ||| |||||| |||| ||| || |||||| ||||||||| |||||||||| TTTTGGGAGG GAGACGCCTG ACAA-ACTTT AGCTAACGTT TGCTATGGAG CACAATTAAA 235 TCAAACCCTA GCTACTCCAT TTATTTTAGG TTATTAGTTT GCTATTATAT AAGATTTTGT 7657 |||||| ||| |||||||||| ||| |||| ||| |||||| |||||||||| | ||||| TCAAACTCTA GCTACTCCAT TTA-GTTAGA TTACTAGTTT GCTATTATAT ACAATTTTCC 294 CTATATAATT TTTTTTCATA CTATAGGTAA ACTTCTTTGA TTGTTAGATT TAAAATCTTG 7597 | | | CAAGAGCT.. .......... .......... .......... .......... .......... 302 AAATAAAATA GGTACCTTCT ACATTATATA AATATGACCC TAATGCTACA AAATTATTTG 7537 .......... .......... .......... .......... .......... .......... 302 GCTAAAAAAT TATTTGGTCC AATATATTCC TATTTGTTGA AATGATTTCC CTACTTAATA 7477 .......... .......... .......... .......... .......... .......... 302 ATTGACACTA GATCTTGCCT TGTGTTATAA TTGAAGATAT ATTTGATACC ACATGCCTAT 7417 .......... .......... .......... .......... .......... .......... 302 TTTAATCAAA GTTGTATTTA AAATTCTGAT TCCACGTTCG TTACAGTTAA ACTTTTTTAG 7357 .......... .......... .......... .......... .......... .......... 302 TTTATTTTTA AAAAAAAGAT AGTTTATTAA GGATTTTCTT CCCTTCTTCT ACCTTGTTGT 7297 .......... .......... .......... .......... .......... .......... 302 CCGATAATAT ATAGCTTGTA ACGACCTGTT TAGTCATTTT GAGCAGCAGA TTTTATTTCT 7237 .......... .......... .......... .......... .......... .......... 302 GGAAAAATAG GCTGAGGCAA CGGATCCCAC GACGGACCGT CATGGGCACG ACGGACCGTC 7177 .......... .......... .......... .......... .......... .......... 302 GCAGGGTCTC GTTTCAAAAC ACTTAGAAAA TCTGAAATTG GGTACTGAAA ATCGACTCTC 7117 .......... .......... .......... .......... .......... .......... 302 TGAACTTCGT GACGGAATGG CAGGACGGAC CGTCACAGGC GTGACGGACC GTCACAGAGC 7057 .......... .......... .......... .......... .......... .......... 302 CTTCAGTGAA AACCCATTCT CTGAACCTTA CGACGACTTG CAGGACGGAC CGTCGTAGGC 6997 .......... .......... .......... .......... .......... .......... 302 ACGACGGGCC GTCGCAGGCT ACGCAATCCC AGGCTGTGTC GGATTTCTGT TAATTTATTT 6937 .......... .......... .......... .......... .......... .......... 302 AAGGGGCATT TTGGACTATT TCCTACTTTA ATTATAAAGT GGTGGGTTAA TGTTAATAAG 6877 .......... .......... .......... .......... .......... .......... 302 TCTAATTACT TGGGGGTTAA AAGAGGTAAC CTTAAGTTAA CTAGTGGGTT ATCTTTTATA 6817 .......... .......... .......... .......... .......... .......... 302 CTTAATTATA TGTTAATTAG GGTAAAAGAA AGAGGGTTGG AATAAGAAAA ATAAGAAAGA 6757 ||| || | ||| | || || |||| | || .......... .......... TGTATAAAAT GGAGAGAAGG AAAAAGATTT AGAATT.... 338 ACAAAGAGAG ACAGAAAAAG AAAGAAAACG AGTAGAGAGA GAGAGAAACG AAGGGAATAT 6697 .......... .......... .......... .......... .......... .......... 338 CAAGGATTTT GAGAAGATAG CTTGTTGATC GCAATTCTTC GGTGGAGGTA GGTTATGGTT 6637 .......... .......... .......... .......... .......... .......... 338 ATTTCATGCT ATTCGTAGTA AACTCTTAAT AGCGAATGAT ATGTGTTAGT AGTATTGTGA 6577 .......... .......... .......... .......... .......... .......... 338 ACCTTCTATA TGCTTAATTG TATGCTTGCA TGAATGATGT GATTATGTAA TTATGAATAA 6517 .......... .......... .......... .......... .......... .......... 338 ATAAGCATGA TGAAGCTATT TAATCCCAAA TCTTGAAAAG AAACCATAAT CTACTTTGTT 6457 .......... .......... .......... .......... .......... .......... 338 AATGATGATG CCTTGGTATA AAAGAAGGCT TGATGAATGA AAGTAGTGAG ATTAGGGGAT 6397 | ||| || ||||||| | | || ||| .......... .......... ....ATCGCT TG-TGAATGA CAAGA-AAAG ATTG...... 366 CGGGTGCCAC GTTCCGGTAC CAGGATAGTA TATGAGGATC GGAGTATCAC GTTCCGACAC 6337 .......... .......... .......... .......... .......... .......... 366 CAGGATAATA TATGGATCGG GTGCCACGTT CCGGTACCAG GATAGAATAT GGATCGGGTG 6277 .......... .......... .......... .......... .......... .......... 366 TCACGTTCCA ACACCAGGAT AGAATATGGA TCGGGTGCCA CGTTCCGGTA CCAGGGTAGA 6217 .......... .......... .......... .......... .......... .......... 366 ATATGGATCG GGTGTCACGT TCCGACACCA GGATAGAATA TGGATCGGGT GCCACGTTCC 6157 .......... .......... .......... .......... .......... .......... 366 GGTACCAGGA TAATATATGA GGATCGGAGT GTCACGTTCC GACACCAGGA TAGTATATTG 6097 .......... .......... .......... .......... .......... .......... 366 AGGAGCGGAG TGTCACGTAC CGACACGAGG GGAATAAAGA TAATGAATTT TGAAAGATGT 6037 .......... .......... .......... .......... .......... .......... 366 TAATATGTTC AATCTAATGA ACCTAATTCC CAAATGAGTA TGATGAGGAG GCGTGAGTCC 5977 .......... .......... .......... .......... .......... .......... 366 TCATTGATGT GCTTGGTGTT GCAACCAAGG GTTATGGTAA CTGTAAATGC TGCATGCTAA 5917 .......... .......... .......... .......... .......... .......... 366 GGATATTAGT TGATTTTATG ATATTGCTTA ACATATACTG TTTTCTATTT TGAGTTGGCC 5857 .......... .......... .......... .......... .......... .......... 366 GATGATATCT ACTCAGTACC CGTGTTTTGT ACTGACCCCT ACTTTTATGT TTTCTTCTTT 5797 .......... .......... .......... .......... .......... .......... 366 GTTATTTGTG GAGTGCAGCA AACGTGCCGT CGTCTTCAAC TCAACAGTAA TTCAAGCCAG 5737 || || .......... ........CA AAA....... .......... .......... .......... 371 TCTTTACTAC ACCGGAAATT CAGGGTGAGC TAATGTTTCT AGCTTGGACT GGATCTTTTT 5677 .......... .......... .......... .......... .......... .......... 371 CTTCAAGTCT TGATGCCTTG AACTTCCGGC ATGGACTAGC TTTTACTTGT TTTAGCTTTT 5617 .......... .......... .......... .......... .......... .......... 371 AGAATACTCT TAGTTTAGTA ATTGATCATA GATGTTCTTG TGATGATGAC TTCCAGATTT 5557 .......... .......... .......... .......... .......... .......... 371 TGGGAAATAA TAATAGTTAT TGATTTTATT AATGAGTTTA AGTCTTCCGC ATTATTTACT 5497 .......... .......... .......... .......... .......... .......... 371 GTTGATATTA TATTGAAATG TTAGAGTTTA GATTGGTTGG TTCGCTCACA TAGGAGGGTA 5437 .......... .......... .......... .......... .......... .......... 371 AGTGTGGGTG CCAGTCACGG TCCGGATTTG GGTCGTGACA TAGCTCAATG ATTATAAAAT 5377 .......... .......... .......... .......... .......... .......... 371 GATATAAGTG AGCAGCTAAT GGCAATTACA TAAATCAACA GATATGTTTT AGAAACTCAC 5317 .......... .......... .......... .......... .......... .......... 371 CTCTCGAACT TACGAAAATC GTATCATCTA AAATTGTGAA TTCGTCACTG CAAACAACTC 5257 .......... .......... .......... .......... .......... .......... 371 GTGTCTCCTC TATTCGCCTC CATCACCATC CATATCATGT ATATGAGCAA TGGCGATGAT 5197 .......... .......... .......... .......... .......... .......... 371 CGCAACGCCG GCTGCTCCCA TATCGTTGCT CCCATGATTG TTAGCTACCT TATGGTTTAC 5137 .......... .......... .......... .......... .......... .......... 371 ATGATCAGTA TGACCATAAC CAACCATGTT GTTAAAGCCT TTACTTTTTT GAGTTGGTTT 5077 .......... .......... .......... .......... .......... .......... 371 TGAATATTGT GGAACTCTTT CTTTTGGTGT TGACTTGTGC CTTTCTTTCT TAGTTTTGTT 5017 .......... .......... .......... .......... .......... .......... 371 GTTCTTCCAA TTAATCATGC AAAAACAACA ATTCTTGATC CCCATATTAA AGACATGCAC 4957 .......... .......... .......... .......... .......... .......... 371 AATAAGGAAT TTGCTTAATG ATGAAGTGAA AAGGACAAAG GAAATTTCTT CTTCTTTTTG 4897 .......... .......... .......... .......... .......... .......... 371 ATTTAGTATA CAATGTTGGA TTAGTGAGAA ATGGAGCCTA ATTGACATTA TGGCAAGAAC 4837 .......... .......... .......... .......... .......... .......... 371 ATGGCTAATA AACATGTCTA TAACTACTCA TCTAGGCTGG CTTTCTCTAT TAAAAAGTTG 4777 .......... .......... .......... .......... .......... .......... 371 TGTGGTCCAA ACCTATTTGT GTATGAATAT TGGTACACGA CGAACAAATC TTAGAGGTAA 4717 .......... .......... .......... .......... .......... .......... 371 TAAATATATA CATTAACAAA AAGTGATTTA ACTTTTATTG GTATTAGTTA ATTGTTACTG 4657 .......... .......... .......... .......... .......... .......... 371 AATTCGGTGT TGCTATAGGC TTTAGAGACA TTTACAAAAA ATGTTAAAAT GCCACTGAAT 4597 .......... .......... .......... .......... .......... .......... 371 ATATATTTTT AACAATAAGT ATTCTATTGT TGTTAATTAA TTTATTATAA AGATCTTTTT 4537 .......... .......... .......... .......... .......... .......... 371 TTTTTTTGTA ATAGTACCAA ACCCTAGTAT TCACACATTG AGTGGCCATA TTAAAACGTC 4477 .......... .......... .......... .......... .......... .......... 371 CAATGATTTT TCGGCCTATC ATATTATTTT CTTACATATT AAGCTTCTTC AATTGAAGTT 4417 .......... .......... .......... .......... .......... .......... 371 AATGCTATTA CCTTTCTCCT ACTTCGATAG GAAGCAGTGA CTTTGTTTTC GCTTT 4362 ||| | | | ||||||| ||||| .......... .......... .......... TAAGAATTTA -GTTGTTTT- GCTTT 394 hqPGS_C06HBa0158P14.1-16-_SGN-E392605- (8075 7990,7830 7649,6796 6761,6432 6403,5778 5774,4386 4362) ******************************************************************************** EST sequence 2 -strand 679 n (File: SGN-E370357-) 1 TTGGAGGTGG TGTTGCCATG GTGGATTGGG GGAAAAATGG AATTGGACTT TGTAGGAGGA 61 GAAATGGGCA TTTACTTACA CAAATGGCCA CTATTTACAA GAAAACACAT CAGAAATTCG 121 AGGAAAATTC TGCATCCGTA GGCAAATTTG AAAAATTTTA CAAATGGCAG AGGTGTAATC 181 AATCAATAAT ATTTGGGTGA CAGCCGAATG ATTAATTGAC ACTCGAATAA AGCAAACGTA 241 CCGTCGTCTT CAACTCAACC GCAACTCTAG CCAGTCTTCA TTATACCGGA TTTCAGTGTG 301 AGCTAACGCT TCTAGCTTGG ACTGGATCTT CTTCTTCATG TCTTGATGCC TTGAAGTTCC 361 GGCATGGACT AGCTTTTTAG TTATTCTAGC TTTCTAGATA CTCTTAGAAT TAGTAATTTG 421 AGGATAGATG TTCTTGTGAT GATGACTTCC AGATTTTGGG GATAATAATA GTTGTTGAGT 481 TTTTAGAAGT TATTTAATTG ATTTTCATTA ATGAGTTTAA GTCTTCCGCA TTATATTCCG 541 TCATTATATT GAAATGTTGG ATTTTGTATT GGTTGGTTCG CTCACATAGG AGGGTAAGTG 601 TGGGTGCCAC TTGCGGCTCG ATTTGGGTCG TGACATTAAA GATTATCGAA TTCATAATAT 661 AATTGTAAGA AAAAAAAAA Predicted gene structure (within gDNA segment 9099 to 3166): Exon 1 7778 7764 ( 15 n); cDNA 189 203 ( 15 n); score: 0.867 Intron 1 7763 7488 ( 276 n); Pd: 0.120 (s: 0), Pa: 0.000 (s: 0) Exon 2 7487 7464 ( 24 n); cDNA 204 227 ( 24 n); score: 0.750 Intron 2 7463 5784 (1680 n); Pd: 0.000 (s: 0), Pa: 0.792 (s: 0.86) Exon 3 5783 5526 ( 258 n); cDNA 228 485 ( 258 n); score: 0.845 Intron 3 5525 4387 (1139 n); Pd: 0.000 (s: 0.90), Pa: 0.795 (s: 0) Exon 4 4386 4360 ( 27 n); cDNA 486 513 ( 28 n); score: 0.537 PPA cDNA 667 679 MATCH C06HBa0158P14.1-16- SGN-E370357- 0.845 324 0.477 C PGS_C06HBa0158P14.1-16-_SGN-E370357- (7778 7764,7487 7464,5783 5526,4386 4360) Alignment (genomic DNA sequence = upper lines): ATATTTGGGA GAGAGGCGCC TGACAATTTT TTTGCAAACG TTAGCTATGG AGCACAATTA 7719 ||||||||| || || ATATTTGGGT GACAG..... .......... .......... .......... .......... 203 AATCAAACCC TAGCTACTCC ATTTATTTTA GGTTATTAGT TTGCTATTAT ATAAGATTTT 7659 .......... .......... .......... .......... .......... .......... 203 GTCTATATAA TTTTTTTTCA TACTATAGGT AAACTTCTTT GATTGTTAGA TTTAAAATCT 7599 .......... .......... .......... .......... .......... .......... 203 TGAAATAAAA TAGGTACCTT CTACATTATA TAAATATGAC CCTAATGCTA CAAAATTATT 7539 .......... .......... .......... .......... .......... .......... 203 TGGCTAAAAA ATTATTTGGT CCAATATATT CCTATTTGTT GAAATGATTT CCCTACTTAA 7479 || | | | .......... .......... .......... .......... .......... .CCGAATGAT 212 TAATTGACAC TAGATCTTGC CTTGTGTTAT AATTGAAGAT ATATTTGATA CCACATGCCT 7419 |||||||||| | || TAATTGACAC TCGAA..... .......... .......... .......... .......... 227 ATTTTAATCA AAGTTGTATT TAAAATTCTG ATTCCACGTT CGTTACAGTT AAACTTTTTT 7359 .......... .......... .......... .......... .......... .......... 227 AGTTTATTTT TAAAAAAAAG ATAGTTTATT AAGGATTTTC TTCCCTTCTT CTACCTTGTT 7299 .......... .......... .......... .......... .......... .......... 227 GTCCGATAAT ATATAGCTTG TAACGACCTG TTTAGTCATT TTGAGCAGCA GATTTTATTT 7239 .......... .......... .......... .......... .......... .......... 227 CTGGAAAAAT AGGCTGAGGC AACGGATCCC ACGACGGACC GTCATGGGCA CGACGGACCG 7179 .......... .......... .......... .......... .......... .......... 227 TCGCAGGGTC TCGTTTCAAA ACACTTAGAA AATCTGAAAT TGGGTACTGA AAATCGACTC 7119 .......... .......... .......... .......... .......... .......... 227 TCTGAACTTC GTGACGGAAT GGCAGGACGG ACCGTCACAG GCGTGACGGA CCGTCACAGA 7059 .......... .......... .......... .......... .......... .......... 227 GCCTTCAGTG AAAACCCATT CTCTGAACCT TACGACGACT TGCAGGACGG ACCGTCGTAG 6999 .......... .......... .......... .......... .......... .......... 227 GCACGACGGG CCGTCGCAGG CTACGCAATC CCAGGCTGTG TCGGATTTCT GTTAATTTAT 6939 .......... .......... .......... .......... .......... .......... 227 TTAAGGGGCA TTTTGGACTA TTTCCTACTT TAATTATAAA GTGGTGGGTT AATGTTAATA 6879 .......... .......... .......... .......... .......... .......... 227 AGTCTAATTA CTTGGGGGTT AAAAGAGGTA ACCTTAAGTT AACTAGTGGG TTATCTTTTA 6819 .......... .......... .......... .......... .......... .......... 227 TACTTAATTA TATGTTAATT AGGGTAAAAG AAAGAGGGTT GGAATAAGAA AAATAAGAAA 6759 .......... .......... .......... .......... .......... .......... 227 GAACAAAGAG AGACAGAAAA AGAAAGAAAA CGAGTAGAGA GAGAGAGAAA CGAAGGGAAT 6699 .......... .......... .......... .......... .......... .......... 227 ATCAAGGATT TTGAGAAGAT AGCTTGTTGA TCGCAATTCT TCGGTGGAGG TAGGTTATGG 6639 .......... .......... .......... .......... .......... .......... 227 TTATTTCATG CTATTCGTAG TAAACTCTTA ATAGCGAATG ATATGTGTTA GTAGTATTGT 6579 .......... .......... .......... .......... .......... .......... 227 GAACCTTCTA TATGCTTAAT TGTATGCTTG CATGAATGAT GTGATTATGT AATTATGAAT 6519 .......... .......... .......... .......... .......... .......... 227 AAATAAGCAT GATGAAGCTA TTTAATCCCA AATCTTGAAA AGAAACCATA ATCTACTTTG 6459 .......... .......... .......... .......... .......... .......... 227 TTAATGATGA TGCCTTGGTA TAAAAGAAGG CTTGATGAAT GAAAGTAGTG AGATTAGGGG 6399 .......... .......... .......... .......... .......... .......... 227 ATCGGGTGCC ACGTTCCGGT ACCAGGATAG TATATGAGGA TCGGAGTATC ACGTTCCGAC 6339 .......... .......... .......... .......... .......... .......... 227 ACCAGGATAA TATATGGATC GGGTGCCACG TTCCGGTACC AGGATAGAAT ATGGATCGGG 6279 .......... .......... .......... .......... .......... .......... 227 TGTCACGTTC CAACACCAGG ATAGAATATG GATCGGGTGC CACGTTCCGG TACCAGGGTA 6219 .......... .......... .......... .......... .......... .......... 227 GAATATGGAT CGGGTGTCAC GTTCCGACAC CAGGATAGAA TATGGATCGG GTGCCACGTT 6159 .......... .......... .......... .......... .......... .......... 227 CCGGTACCAG GATAATATAT GAGGATCGGA GTGTCACGTT CCGACACCAG GATAGTATAT 6099 .......... .......... .......... .......... .......... .......... 227 TGAGGAGCGG AGTGTCACGT ACCGACACGA GGGGAATAAA GATAATGAAT TTTGAAAGAT 6039 .......... .......... .......... .......... .......... .......... 227 GTTAATATGT TCAATCTAAT GAACCTAATT CCCAAATGAG TATGATGAGG AGGCGTGAGT 5979 .......... .......... .......... .......... .......... .......... 227 CCTCATTGAT GTGCTTGGTG TTGCAACCAA GGGTTATGGT AACTGTAAAT GCTGCATGCT 5919 .......... .......... .......... .......... .......... .......... 227 AAGGATATTA GTTGATTTTA TGATATTGCT TAACATATAC TGTTTTCTAT TTTGAGTTGG 5859 .......... .......... .......... .......... .......... .......... 227 CCGATGATAT CTACTCAGTA CCCGTGTTTT GTACTGACCC CTACTTTTAT GTTTTCTTCT 5799 .......... .......... .......... .......... .......... .......... 227 TTGTTATTTG TGGAGTGCAG CAAACGTGCC GTCGTCTTCA ACTCAACAGT AATTCAAGCC 5739 | || ||||||| || |||||||||| ||||||| | || || |||| .......... .....TAAAG CAAACGTACC GTCGTCTTCA ACTCAACCGC AACTCTAGCC 272 AGTCTTTACT ACACCGGAAA TTCAGGGTGA GCTAATGTTT CTAGCTTGGA CTGGATCTTT 5679 |||||| | | | ||||| | ||||| |||| ||||| | || |||||||||| ||||||||| AGTCTTCATT ATACCGG-AT TTCAGTGTGA GCTAACGCTT CTAGCTTGGA CTGGATCTTC 331 TTCTTCAAGT CTTGATGCCT TGAACTTCCG GCATGGACTA GC-TTTTACT TGTTTTAGCT 5620 ||||||| || |||||||||| |||| ||||| |||||||||| || ||||| | | || ||||| TTCTTCATGT CTTGATGCCT TGAAGTTCCG GCATGGACTA GCTTTTTAGT TATTCTAGCT 391 TT-TAGAATA CTCTTAG-TT TAGTAA-TTG ATCATAGATG TTCTTGTGAT GATGACTTCC 5563 || ||| ||| ||||||| | |||||| ||| | ||||||| |||||||||| |||||||||| TTCTAG-ATA CTCTTAGAAT TAGTAATTTG AGGATAGATG TTCTTGTGAT GATGACTTCC 450 AGATTTTGGG AAATAATAAT AGTTATTGAT TTTATTAATG AGTTTAAGTC TTCCGCATTA 5503 |||||||||| |||||||| |||| |||| ||| ||| AGATTTTGGG -GATAATAAT AGTTGTTGAG TTT-TTA... .......... .......... 485 TTTACTGTTG ATATTATATT GAAATGTTAG AGTTTAGATT GGTTGGTTCG CTCACATAGG 5443 .......... .......... .......... .......... .......... .......... 485 AGGGTAAGTG TGGGTGCCAG TCACGGTCCG GATTTGGGTC GTGACATAGC TCAATGATTA 5383 .......... .......... .......... .......... .......... .......... 485 TAAAATGATA TAAGTGAGCA GCTAATGGCA ATTACATAAA TCAACAGATA TGTTTTAGAA 5323 .......... .......... .......... .......... .......... .......... 485 ACTCACCTCT CGAACTTACG AAAATCGTAT CATCTAAAAT TGTGAATTCG TCACTGCAAA 5263 .......... .......... .......... .......... .......... .......... 485 CAACTCGTGT CTCCTCTATT CGCCTCCATC ACCATCCATA TCATGTATAT GAGCAATGGC 5203 .......... .......... .......... .......... .......... .......... 485 GATGATCGCA ACGCCGGCTG CTCCCATATC GTTGCTCCCA TGATTGTTAG CTACCTTATG 5143 .......... .......... .......... .......... .......... .......... 485 GTTTACATGA TCAGTATGAC CATAACCAAC CATGTTGTTA AAGCCTTTAC TTTTTTGAGT 5083 .......... .......... .......... .......... .......... .......... 485 TGGTTTTGAA TATTGTGGAA CTCTTTCTTT TGGTGTTGAC TTGTGCCTTT CTTTCTTAGT 5023 .......... .......... .......... .......... .......... .......... 485 TTTGTTGTTC TTCCAATTAA TCATGCAAAA ACAACAATTC TTGATCCCCA TATTAAAGAC 4963 .......... .......... .......... .......... .......... .......... 485 ATGCACAATA AGGAATTTGC TTAATGATGA AGTGAAAAGG ACAAAGGAAA TTTCTTCTTC 4903 .......... .......... .......... .......... .......... .......... 485 TTTTTGATTT AGTATACAAT GTTGGATTAG TGAGAAATGG AGCCTAATTG ACATTATGGC 4843 .......... .......... .......... .......... .......... .......... 485 AAGAACATGG CTAATAAACA TGTCTATAAC TACTCATCTA GGCTGGCTTT CTCTATTAAA 4783 .......... .......... .......... .......... .......... .......... 485 AAGTTGTGTG GTCCAAACCT ATTTGTGTAT GAATATTGGT ACACGACGAA CAAATCTTAG 4723 .......... .......... .......... .......... .......... .......... 485 AGGTAATAAA TATATACATT AACAAAAAGT GATTTAACTT TTATTGGTAT TAGTTAATTG 4663 .......... .......... .......... .......... .......... .......... 485 TTACTGAATT CGGTGTTGCT ATAGGCTTTA GAGACATTTA CAAAAAATGT TAAAATGCCA 4603 .......... .......... .......... .......... .......... .......... 485 CTGAATATAT ATTTTTAACA ATAAGTATTC TATTGTTGTT AATTAATTTA TTATAAAGAT 4543 .......... .......... .......... .......... .......... .......... 485 CTTTTTTTTT TTTGTAATAG TACCAAACCC TAGTATTCAC ACATTGAGTG GCCATATTAA 4483 .......... .......... .......... .......... .......... .......... 485 AACGTCCAAT GATTTTTCGG CCTATCATAT TATTTTCTTA CATATTAAGC TTCTTCAATT 4423 .......... .......... .......... .......... .......... .......... 485 GAAGTTAATG CTATTACCTT TCTCCTACTT CGATAGGAAG -CAGTGACTT TGTTTTCGCT 4364 |||| | | | || ||||| | .......... .......... .......... ......GAAG TTATTTAATT GATTTTCATT 509 TTTG 4360 || AATG 513 hqPGS_C06HBa0158P14.1-16-_SGN-E370357- (7487 7464,5783 5526) ******************************************************************************** EST sequence 40 -strand 730 n (File: SGN-E546506-) 1 GTTCCGGTAC CAGGATAGAA TATGAGGATC GGAGTGTCAC GTTCCGACAC CAGGATAGAA 61 AATGGATCGG GTGCCACGTT CCGGTACCAG GATAGAATGA GGATCGGAGT GCCACGTTCC 121 GGCACCAGGA TAGAAATAGA GGATCGGAGT GTCACGTACC GACACAAGAG GAAGAAAGAT 181 AATGAATCTT GAAAGATAAT GAATATACTC AATCTAATGA ACTTAATTCC CAAATGAGTA 241 TGGTATTGAG GCTTGAGTCC TCATGTGTGA ACTCGGTTGT AGTTATTGAT GAATTCATGG 301 TGTTATTGCT ACATGTTGAG TATTGTAGTT GATTTACATT ATTATTGATA TATACTGTTC 361 CCTATTTTGA GTTGGCCGAT GATATCTACT CAGTACGTGT GGTTGTACTG ACCCCTACTT 421 TCATGTTTTC CTCTTTGTTA TTTGTGTAAT GCAGCAAACG TTCCGTCAAC TTCAACTCAA 481 CAGTAGATCT AGCCAGTCTT CACTTCATCG GAAAATTCAG GGTGAGCTAA TGCGTCTAGC 541 TTGGACTGGG TCTTCTTCTT CAAGTCTTGA TGCCTTGAAT TTCCGGCATG GACTAGCTTT 601 TTAGTTATTT TGTTCTTAGA CATTCCTAGT TAAGTAATTT GAGATAGATG TTCTTGTGAT 661 GATGACTTCC AGATTTTGGG GATAATAATA ATAGTATTGA ATTGTTTTTA TTAAAAAAAA 721 AAAAAAAAAA Predicted gene structure (within gDNA segment 7167 to 4453): Exon 1 6386 6291 ( 96 n); cDNA 1 96 ( 96 n); score: 0.948 Intron 1 6290 6141 ( 150 n); Pd: 0.000 (s: 0.94), Pa: 0.000 (s: 0.88) Exon 2 6140 5542 ( 599 n); cDNA 97 690 ( 594 n); score: 0.821 PPA cDNA 713 730 MATCH C06HBa0158P14.1-16- SGN-E546506- 0.839 695 0.952 C PGS_C06HBa0158P14.1-16-_SGN-E546506- (6386 6291,6140 5542) Alignment (genomic DNA sequence = upper lines): GTTCCGGTAC CAGGATAGTA TATGAGGATC GGAGTATCAC GTTCCGACAC CAGGATAATA 6327 |||||||||| |||||||| | |||||||||| ||||| |||| |||||||||| ||||||| | GTTCCGGTAC CAGGATAGAA TATGAGGATC GGAGTGTCAC GTTCCGACAC CAGGATAGAA 60 TATGGATCGG GTGCCACGTT CCGGTACCAG GATAGAATAT GGATCGGGTG TCACGTTCCA 6267 ||||||||| |||||||||| |||||||||| |||||| AATGGATCGG GTGCCACGTT CCGGTACCAG GATAGA.... .......... .......... 96 ACACCAGGAT AGAATATGGA TCGGGTGCCA CGTTCCGGTA CCAGGGTAGA ATATGGATCG 6207 .......... .......... .......... .......... .......... .......... 96 GGTGTCACGT TCCGACACCA GGATAGAATA TGGATCGGGT GCCACGTTCC GGTACCAGGA 6147 .......... .......... .......... .......... .......... .......... 96 TAATATATGA GGATCGGAGT GTCACGTTCC GACACCAGGA TAGTATATTG AGGAGCGGAG 6087 |||| |||||||||| | |||||||| | |||||||| ||| | || | |||| ||||| ......ATGA GGATCGGAGT GCCACGTTCC GGCACCAGGA TAG-AAATAG AGGATCGGAG 149 TGTCACGTAC CGACACGAGG GGAATAAAGA TAATGAATTT TGAAAGAT-G TTAATATGTT 6028 |||||||||| |||||| || |||| ||||| |||||||| | |||||||| | ||||| | TGTCACGTAC CGACACAAGA GGAAGAAAGA TAATGAATCT TGAAAGATAA TGAATATACT 209 CAATCTAATG AACCTAATTC CCAAATGAGT ATGATGAGGA GGCGTGAGTC CTCATTGATG 5968 |||||||||| ||| |||||| |||||||||| ||| | || ||| |||||| ||||| || CAATCTAATG AACTTAATTC CCAAATGAGT ATGGTATTGA GGCTTGAGTC CTCATGTGTG 269 TGCTTGG-TG TTGCAACCAA GGGTTATGGT AACTGTAAAT GCTGCATGCT AAGGATATTA 5909 || || || | | | | | | | | ||| | | ||| |||| | || || || AACTCGGTTG TAGTTATTGA TGAAT-TCAT -GGTGTTATT GCTACATGTT GAGTATTGTA 327 GTTGATTTTA TGATATTGCT TAACATATAC TGTTTTCTAT TTTGAGTTGG CCGATGATAT 5849 ||||| |||| |||| | | | |||||| |||| |||| |||||||||| |||||||||| GTTGA-TTTA CATTATT-AT TGATATATAC TGTTCCCTAT TTTGAGTTGG CCGATGATAT 385 CTACTCAGTA CCCGTGTTTT GTACTGACCC CTACTTTTAT GTTTTCTTCT TTGTTATTTG 5789 |||||||||| | ||| || |||||||||| ||||||| || |||||| ||| |||||||||| CTACTCAGTA CGTGTG-GTT GTACTGACCC CTACTTTCAT GTTTTCCTCT TTGTTATTTG 444 TGGAGTGCAG CAAACGTGCC GTCGTCTTCA ACTCAACAGT AATTCAAGCC AGTCTTTACT 5729 || | ||||| ||||||| || ||| ||||| |||||||||| | || |||| |||||| ||| TGTAATGCAG CAAACGTTCC GTCAACTTCA ACTCAACAGT AGATCTAGCC AGTCTTCACT 504 ACACCGG-AA ATTCAGGGTG AGCTAATGTT TCTAGCTTGG ACTGGATCTT TTTCTTCAAG 5670 || ||| || |||||||||| |||||||| |||||||||| ||||| |||| ||||||||| TCATCGGAAA ATTCAGGGTG AGCTAATGCG TCTAGCTTGG ACTGGGTCTT CTTCTTCAAG 564 TCTTGATGCC TTGAACTTCC GGCATGGACT AGC-TTTTAC TTGTTTTAGC TTTTAGAATA 5611 |||||||||| ||||| |||| |||||||||| ||| ||||| || |||| | | |||| | | TCTTGATGCC TTGAATTTCC GGCATGGACT AGCTTTTTAG TTATTTT-GT TCTTAG-ACA 622 CTCTTAGTTT AGTAATTGAT CATAGATGTT CTTGTGATGA TGACTTCCAG ATTTTGGGAA 5551 || ||||| ||||||| ||||||||| |||||||||| |||||||||| |||||||| TTCCTAGTTA AGTAATTTGA GATAGATGTT CTTGTGATGA TGACTTCCAG ATTTTGGG-G 681 ATAATAATA 5542 ||||||||| ATAATAATA 690 hqPGS_C06HBa0158P14.1-16-_SGN-E546506- (6386 6291,6140 5542) ******************************************************************************** EST sequence 23 -strand 686 n (File: SGN-E241789-) 1 TTGTTAATGA TGATGTCTTG GTATAAAAGA AGGCTTGATG AACTAAAAGA ATGAGGTTAG 61 GGGATCGGGT GTCACGAACC GACACGTAGT ATTAATGGAT CGGGTGTCAC GAACCGACAC 121 ATAGTATTAA TGGATCGGGT GTCACGAATC GGCACGTAGT ATTAGGAGAT CGGGTGTAAC 181 GAACCGACAC GTAGTATTAG GGGATCGGGT GTCACGAACC GACACGTAGC ATTAGGGGAT 241 CGGAGTATCA CGTTCCGACA CCACGATAGT AAAAAGAATG AATCTTGAAT TATGTTAATG 301 TACTCAATTT AATGAACCTG TTTCCCAAAT GAGTATGGTG TGGAGGCTTG AGTCCTCATA 361 GATGTTCTTG GGTTGTGCCC AATGGTTATG GTACTTGTTG TTGTCACCTG TTAAGTGTTA 421 TGGTTGATTT TATTTTATTA TTTGATATAT ATTGTTCTCT ATTCTGAGTT GGCCGATGAT 481 ATCTACTCAG TACTCGTGTT TGTACTGACC CCTACTTTTA TGTTTTCTTT TTGTTAATTG 541 TGGAGTGCAG CAAACGTACC GTCGTCTTCA ACTCAACCGC AACTCTAACC AGTCTTCATC 601 ACGTCAGATT TCAGGGTGAG CTATTGTTCC TAGCTCGGAC TGGATTCTCT CTCATTCATG 661 TCTTGATGTC CTTGAAGATC AGACAT Predicted gene structure (within gDNA segment 9099 to 4062): Exon 1 6461 6263 ( 199 n); cDNA 1 190 ( 190 n); score: 0.759 Intron 1 6262 6149 ( 114 n); Pd: 0.000 (s: 0.64), Pa: 0.000 (s: 0.72) Exon 2 6148 5645 ( 504 n); cDNA 191 686 ( 496 n); score: 0.793 MATCH C06HBa0158P14.1-16- SGN-E241789- 0.783 703 1.025 C PGS_C06HBa0158P14.1-16-_SGN-E241789- (6461 6263,6148 5645) Alignment (genomic DNA sequence = upper lines): TTGTTAATGA TGATGCCTTG GTATAAAAGA AGGCTTGATG AATGAAAGTA GTGAGATTAG 6402 |||||||||| ||||| |||| |||||||||| |||||||||| || ||| | |||| |||| TTGTTAATGA TGATGTCTTG GTATAAAAGA AGGCTTGATG AACTAAAAGA ATGAGGTTAG 60 GGGATCGGGT GCCACGTTCC GGTACCAGGA TAGTATATGA GGATCGGAGT ATCACGTTCC 6342 |||||||||| | |||| || | | || | |||||| ||||||| || ||||| || GGGATCGGGT GTCACGAACC -G-A-CACG- TAGTATTAAT GGATCGG-GT GTCACGAACC 115 GACACCAGGA TAATATATGG ATCGGGTGCC ACGTTCCGGT ACCAGGATAG AATATGGATC 6282 ||||| | || || |||| |||||||| | ||| ||| || | || | |||| GACACATAG- TATTA-ATGG ATCGGGTGTC ACGAATCGGC ACGTAG-TAT TA-GGAGATC 171 GGGTGTCACG TTCCAACACC AGGATAGAAT ATGGATCGGG TGCCACGTTC CGGTACCAGG 6222 |||||| ||| || |||| GGGTGTAACG AACCGACAC. .......... .......... .......... .......... 190 GTAGAATATG GATCGGGTGT CACGTTCCGA CACCAGGATA GAATATGGAT CGGGTGCCAC 6162 .......... .......... .......... .......... .......... .......... 190 GTTCCGGTAC CAGGATAATA TATGAGGATC GGAGTGTCAC GTTCCGACAC CAGGATAGTA 6102 | || || | | ||||| || ||||||| | |||||| | | ||| | .......... ...G-TAGTA TTAGGGGATC GG-GTGTCAC GAACCGACA- C--G-TAGCA 231 TATTGAGGAG CGGAGTGTCA CGTACCGACA CGAGGGGAAT AAAGATAATG AATTTTGAAA 6042 | | | ||| |||||| ||| ||| |||||| | | | | | ||| | |||| ||| ||||| T-TAGGGGAT CGGAGTATCA CGTTCCGACA CCACGATAGT AAAAAGAATG AATCTTGAAT 290 GATGTTAATA TGTTCAATCT AATGAACCTA ATTCCCAAAT GAGTATGATG AGGAGGCGTG 5982 |||||||| | ||||| | ||||||||| ||||||||| ||||||| || |||||| || TATGTTAATG TACTCAATTT AATGAACCTG TTTCCCAAAT GAGTATGGTG TGGAGGCTTG 350 AGTCCTCATT GATGTGCTTG GTGTTGCAAC CAAGGGTTAT GGTAACTGTA AATGCTGCAT 5922 ||||||||| ||||| |||| | |||| | ||| |||||| |||| ||| || | | AGTCCTCATA GATGTTCTTG G-GTTGTGCC CAATGGTTAT GGTACTTGTT GTTGTCACCT 409 GCTAAGGATA TTAGTTGATT TTATGATATT GCTTAACATA TACTGTTTTC TATTTTGAGT 5862 | |||| | | ||||||| |||| |||| || | ||| || |||| || |||| ||||| GTTAAGTGTT ATGGTTGATT TTATTTTATT ATTTGATATA TATTGTTCTC TATTCTGAGT 469 TGGCCGATGA TATCTACTCA GTACCCGTGT TTTGTACTGA CCCCTACTTT TATGTTTTCT 5802 |||||||||| |||||||||| |||| |||| |||||||||| |||||||||| |||||||||| TGGCCGATGA TATCTACTCA GTACTCGTG- TTTGTACTGA CCCCTACTTT TATGTTTTCT 528 TCTTTGTTAT TTGTGGAGTG CAGCAAACGT GCCGTCGTCT TCAACTCAAC AGTAATTCAA 5742 | ||||||| |||||||||| |||||||||| ||||||||| |||||||||| | || || | T-TTTGTTAA TTGTGGAGTG CAGCAAACGT ACCGTCGTCT TCAACTCAAC CGCAACTCTA 587 GCCAGTCTTT ACTACACCGG AAATTCAGGG TGAGCTAATG TTTCTAGCTT GGACTGGA-T 5683 |||||||| | || | | | ||||||| ||||||| || || |||||| |||||||| | ACCAGTCTTC ATCACGTCAG -ATTTCAGGG TGAGCTATTG TTCCTAGCTC GGACTGGATT 646 CTTTTTC-TT CAAGTCTTGA TG-CCTTGAA CTTCCGGCAT 5645 || | || || || ||||||| || ||||||| || | ||| CTCTCTCATT CATGTCTTGA TGTCCTTGAA GATCAGACAT 686 hqPGS_C06HBa0158P14.1-16-_SGN-E241789- (6461 6263,6148 5645) ******************************************************************************** EST sequence 44 +strand 774 n (File: SGN-E349977+) 1 GATGTTGTAA ACCTGTCTAT ATGCTTATTG GTATGCTTGC ATGATTATGA TTATGAAATT 61 GTTATGAATT AACAAAGCAT GATGAAGCTA TTGAATCCCA AATCTTGAAA GAACCCTAAT 121 TCACTTGATA TATTATATAA TAAGATTGAT GAGGCCTTAG TATGAGAGAA GGCTTGATAA 181 ATTATATAAT GAGAATGATG ATGCCTTAGT GTAGAAGAAG GCTTGATGAA TTAGGGGATC 241 GGGTGCCACG TTTCGGTACC AGGATAGAAT GAATATGAGG ATCGGAGTGT CACGTTCCGA 301 CACCAGGATA GAATATGAGG ATCGGAGTGT CACGTTCCGA CACCAGGATA GAATATGAGG 361 ATCGGGTGCC ACGTTCCGGT ACCAGGATAG AATGAATATG AGGATCGGAG TGTTACGTTC 421 CGACACCAGG ATAGAATATG AGGATCGGGT GCCACGTTCC GGTACCAGGA TAGAATGAAT 481 ATGAGGATCG GAGTGCCACG TTCCGGCACC AGGATAGAAA TAGAGGAGCG GAGTGTCACG 541 TACCGACACA AGAGGAAGAA AGATAATGAA TCTTGAAAGA TAATGAATAT ACTCAATCTA 601 ATGAACTTAA TTCCCAAATG AGTATGGTAT TGAGGCTTGA GTCCTCATGT GTGAACTTGA 661 CGGTAATTGT TAATGATNAA GAAATTGCTA TTGCTACATG ATGAGTATTG TAGTTGATTT 721 ACATTATTAT TGATATATAT TGTTCCCTAT TTTGAGTTAG CGATGATATC TACT Predicted gene structure (within gDNA segment 7854 to 1905): Exon 1 6431 6252 ( 180 n); cDNA 208 393 ( 186 n); score: 0.753 Intron 1 6251 6221 ( 31 n); Pd: 0.000 (s: 0.81), Pa: 0.000 (s: 0.71) Exon 2 6220 5844 ( 377 n); cDNA 394 774 ( 381 n); score: 0.761 MATCH C06HBa0158P14.1-16- SGN-E349977+ 0.759 557 0.720 C PGS_C06HBa0158P14.1-16-_SGN-E349977+ (6431 6252,6220 5844) Alignment (genomic DNA sequence = upper lines): AGGCTTGATG AATGAAAGTA GTGAGATTAG GGGATCGGGT GCCACGTTCC GGTACCAGGA 6372 || | || | || | | | ||| ||||| |||||||||| |||||||| | |||||||||| AGTGTAGAAG AAGGCTTG-A -TGA-ATTAG GGGATCGGGT GCCACGTTTC GGTACCAGGA 264 TAG--T--AT ATGAGGATCG GAGTATCACG TTCCGACACC AGGAT--AAT ATATGGATCG 6318 ||| | || |||||||||| |||| ||||| |||||||||| ||||| ||| || |||||| TAGAATGAAT ATGAGGATCG GAGTGTCACG TTCCGACACC AGGATAGAAT ATGAGGATCG 324 G-GTGCCACG TTCCGGTACC AGGATAGAAT AT--GGATCG GGTGTCACGT TCCAACACCA 6261 | ||| |||| ||||| ||| |||||||||| || |||||| |||| ||||| ||| |||| GAGTGTCACG TTCCGACACC AGGATAGAAT ATGAGGATCG GGTGCCACGT TCCGGTACCA 384 GGATAGAATA TGGATCGGGT GCCACGTTCC GGTACCAGGG TAGAATATGG ATCGG-GTGT 6202 ||||||||| | || || ||||| |||| GGATAGAAT. .......... .......... .......... GAATATGAGG ATCGGAGTGT 413 CACGTTCCGA CACCAGGATA GAATAT--GG ATCGGGTGCC ACGTTCCGGT ACCAGGAT-- 6146 ||||||||| |||||||||| |||||| || |||||||||| |||||||||| |||||||| TACGTTCCGA CACCAGGATA GAATATGAGG ATCGGGTGCC ACGTTCCGGT ACCAGGATAG 473 AAT--ATATG AGGATCGGAG TGTCACGTTC CGACACCAGG ATAGTATATT GAGGAGCGGA 6088 ||| ||||| |||||||||| || ||||||| || ||||||| |||| | || |||||||||| AATGAATATG AGGATCGGAG TGCCACGTTC CGGCACCAGG ATAG-AAATA GAGGAGCGGA 532 GTGTCACGTA CCGACACGAG GGGAATAAAG ATAATGAATT TTGAAAGAT- GTTAATATGT 6029 |||||||||| ||||||| || |||| |||| ||||||||| ||||||||| | ||||| GTGTCACGTA CCGACACAAG AGGAAGAAAG ATAATGAATC TTGAAAGATA ATGAATATAC 592 TCAATCTAAT GAACCTAATT CCCAAATGAG TATGATGAGG AGGCGTGAGT CCTCATTGAT 5969 |||||||||| |||| ||||| |||||||||| |||| | | |||| ||||| |||||| | TCAATCTAAT GAACTTAATT CCCAAATGAG TATGGTATTG AGGCTTGAGT CCTCATGTGT 652 GTGCTTGGTG TTGCAACCAA GGGTTATGGT AACTGTAAAT GCTGCATGCT AAGGATATTA 5909 | |||| | | | | | | || || | | ||| |||| | || || || GAACTTGACG GTAATTGTTA ATGATNAAGA AATTGCTATT GCTACATGAT GAGTATTGTA 712 GTTGATTTTA TGATATTGCT TAACATATAC TGTTTTCTAT TTTGAGTTGG CCGATGATAT 5849 ||||| |||| |||| | | | ||||| |||| |||| |||||||| | ||||||||| GTTGA-TTTA CATTATT-AT TGATATATAT TGTTCCCTAT TTTGAGTTAG -CGATGATAT 769 CTACT 5844 ||||| CTACT 774 hqPGS_C06HBa0158P14.1-16-_SGN-E349977+ (6431 6252,6220 5844) ******************************************************************************** EST sequence 56 +strand 515 n (File: SGN-E242359+) 1 CCTAATCTAC TTTGTTAATA ATGATGCCTT GGTATAAAAG AAGGCTTGAT GAACGAAAGT 61 GGTGAGATTA GGGGATCGGG TGCCACGTTC CGGTACCAGG ATAGAATATG GATCGGGTGT 121 CACGTTCCGA CACCAGGATA GAATATGGAT CGGGTGCCAC GTTCCGGTAC CAGGATAGAA 181 TATGGATCGG GTGTCACGTT CCGACACCAG GATAGAATAT GGATCGGGTG TCACGTTCTG 241 ACACCAGGAT AGAATATGGA TCGGGTGCCA CGTTCCGGTG CCAGGATAGT ATATTGAGGA 301 GTGGAGTGTC ACGTAAGGAC ACGAGGGGAA TAAATATGAT GAATCTTGAA ATATGTTAAT 361 ATATGCAATC CAATGAACTA AATTCCCAAA TAAGTATGAT GAGGAGGTGT GAGTCCTCAT 421 TGATGTGCTT GGTGATGCAA CCAAGGGTTA TGGTAATTGC AAATGCTGCA TGCTAAGGAT 481 ATTAGTTAAT TTTATGATAT TGCTTAATAC ATACT Predicted gene structure (within gDNA segment 8190 to 2494): Exon 1 6470 6387 ( 84 n); cDNA 3 86 ( 84 n); score: 0.964 Intron 1 6386 6310 ( 77 n); Pd: 0.000 (s: 0.96), Pa: 0.000 (s: 0.98) Exon 2 6309 5878 ( 432 n); cDNA 87 515 ( 429 n); score: 0.919 MATCH C06HBa0158P14.1-16- SGN-E242359+ 0.926 516 1.002 C PGS_C06HBa0158P14.1-16-_SGN-E242359+ (6470 6387,6309 5878) Alignment (genomic DNA sequence = upper lines): TAATCTACTT TGTTAATGAT GATGCCTTGG TATAAAAGAA GGCTTGATGA ATGAAAGTAG 6411 |||||||||| ||||||| || |||||||||| |||||||||| |||||||||| | |||||| | TAATCTACTT TGTTAATAAT GATGCCTTGG TATAAAAGAA GGCTTGATGA ACGAAAGTGG 62 TGAGATTAGG GGATCGGGTG CCACGTTCCG GTACCAGGAT AGTATATGAG GATCGGAGTA 6351 |||||||||| |||||||||| |||| TGAGATTAGG GGATCGGGTG CCAC...... .......... .......... .......... 86 TCACGTTCCG ACACCAGGAT AATATATGGA TCGGGTGCCA CGTTCCGGTA CCAGGATAGA 6291 ||||||||| |||||||||| .......... .......... .......... .......... .GTTCCGGTA CCAGGATAGA 105 ATATGGATCG GGTGTCACGT TCCAACACCA GGATAGAATA TGGATCGGGT GCCACGTTCC 6231 |||||||||| |||||||||| ||| |||||| |||||||||| |||||||||| |||||||||| ATATGGATCG GGTGTCACGT TCCGACACCA GGATAGAATA TGGATCGGGT GCCACGTTCC 165 GGTACCAGGG TAGAATATGG ATCGGGTGTC ACGTTCCGAC ACCAGGATAG AATATGGATC 6171 ||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGTACCAGGA TAGAATATGG ATCGGGTGTC ACGTTCCGAC ACCAGGATAG AATATGGATC 225 GGGTGCCACG TTCCGGTACC AGGATAATAT ATGAGGATCG GAGTGTCACG TTCCGACACC 6111 ||||| |||| ||| | ||| |||||| || || |||||| | ||| |||| ||||| || GGGTGTCACG TTCTGACACC AGGATAGAAT AT--GGATCG G-GTGCCACG TTCCGGTGCC 282 AGGATAGTAT ATTGAGGAGC GGAGTGTCAC GTACCGACAC GAGGGGAATA AAGATAATGA 6051 |||||||||| ||||||||| |||||||||| ||| ||||| |||||||||| || || |||| AGGATAGTAT ATTGAGGAGT GGAGTGTCAC GTAAGGACAC GAGGGGAATA AATATGATGA 342 ATTTTGAAAG ATGTTAATAT GTTCAATCTA ATGAACCTAA TTCCCAAATG AGTATGATGA 5991 || |||||| |||||||||| | ||||| | |||||| || ||||||||| |||||||||| ATCTTGAAAT ATGTTAATAT ATGCAATCCA ATGAACTAAA TTCCCAAATA AGTATGATGA 402 GGAGGCGTGA GTCCTCATTG ATGTGCTTGG TGTTGCAACC AAGGGTTATG GTAACTGTAA 5931 ||||| |||| |||||||||| |||||||||| || ||||||| |||||||||| |||| || || GGAGGTGTGA GTCCTCATTG ATGTGCTTGG TGATGCAACC AAGGGTTATG GTAATTGCAA 462 ATGCTGCATG CTAAGGATAT TAGTTGATTT TATGATATTG CTTAACATAT ACT 5878 |||||||||| |||||||||| ||||| |||| |||||||||| ||||| | || ||| ATGCTGCATG CTAAGGATAT TAGTTAATTT TATGATATTG CTTAATACAT ACT 515 hqPGS_C06HBa0158P14.1-16-_SGN-E242359+ (6470 6387,6309 5878) ******************************************************************************** EST sequence 39 -strand 710 n (File: SGN-E392027-) 1 CAGCAAACGT GCCATCGTGT TCAACTCAAC AGTAATTCAA GCCAGTCTTA CTACATCGGA 61 AATTCAGGGT GAGCTAATGC TTCTAGCTTG GACTGGATCT TCTTCTTCAA GTCTTGATGC 121 CTTGAACTTC CGGCATGGAC TAGCTTCTTA TGTATTTTTA GCTTTTAGAC TACTCTTAGT 181 TTAGTCATTT GATCGTAGAT GTTCTTGTGG TGATGACTTC CAGATTTTGG GGAATAATAG 241 ATGTTGAATT TTAGAAGTTA ATGAATTGGT CTGTATTTAA TGAGTTTAAG TCTTCCACAT 301 TACTTTCTGT TGATATTATA TTGAAATGTT AAGGTTAGAT TGGTTGGTTC GCTCACATAG 361 GAGGGTAAGT GTGGGTGCCA GTCGCAACCC GGTTTTGGTC GTGACAAACT TGGTATCAGA 421 GCATTAGGTT CGTTGGTCTC ATCACACAAG AACGAGTCTA GTAGAGTCTT AAGGAACGGT 481 AGGGGGATGC CTTTACTTTT CCTTGAGAGG CTATAAGACT TTTGGAAAAT TCCATTCTTT 541 CTTCTTTCGT GCTATTACTT GGGTCCAATT GGTATCTAGG TGATACAAAT TGGTATCTGA 601 CCATCTTCAC TCTATTTCGC AGATGGTTAG AACTAGAGCA ACGACTACGC CAGCATCAAC 661 ACCAGCACCG GCGGGACAGG GTGCGACTGA GCCAGCCACT GGGGCTGTGG Predicted gene structure (within gDNA segment 6562 to 1551): Exon 1 5781 5397 ( 385 n); cDNA 1 406 ( 406 n); score: 0.779 MATCH C06HBa0158P14.1-16- SGN-E392027- 0.779 385 0.542 C PGS_C06HBa0158P14.1-16-_SGN-E392027- (5781 5397) Alignment (genomic DNA sequence = upper lines): CAGCAAACGT GCCGTCGTCT TCAACTCAAC AGTAATTCAA GCCAGTCTTT ACTACACCGG 5722 |||||||||| ||| |||| | |||||||||| |||||||||| ||||||| || |||||| ||| CAGCAAACGT GCCATCGTGT TCAACTCAAC AGTAATTCAA GCCAGTC-TT ACTACATCGG 59 AAATTCAGGG TGAGCTAATG TTTCTAGCTT GGACTGGATC TTTTTCTTCA AGTCTTGATG 5662 |||||||||| |||||||||| ||||||||| |||||||||| || ||||||| |||||||||| AAATTCAGGG TGAGCTAATG CTTCTAGCTT GGACTGGATC TTCTTCTTCA AGTCTTGATG 119 CCTTGAACTT CCGGCATGGA CTAGCTT-TT A-CTTGTTTT AGCTTTTAGA ATACTCTTAG 5604 |||||||||| |||||||||| ||||||| || | | |||| |||||||||| ||||||||| CCTTGAACTT CCGGCATGGA CTAGCTTCTT ATGTATTTTT AGCTTTTAGA CTACTCTTAG 179 TTTAGT-AAT TGATCATAGA TGTTCTTGTG ATGATGACTT CCAGATTTT- GGG-A-AATA 5548 |||||| | | ||||| |||| |||||||||| ||||||||| ||||||||| ||| | |||| TTTAGTCATT TGATCGTAGA TGTTCTTGTG GTGATGACTT CCAGATTTTG GGGAATAATA 239 -A---T-AA- --T---AGTT ATTG-A-T-- T-T-TA-TTA ATGAGTTTAA GTCTTCCGCA 5506 | | || | |||| | || | | | | || ||| |||||||||| ||||||| || GATGTTGAAT TTTAGAAGTT AATGAATTGG TCTGTATTTA ATGAGTTTAA GTCTTCCACA 299 TTATTTACTG TTGATATTAT ATTGAAATGT TAGAGTTTAG ATTGGTTGGT TCGCTCACAT 5446 ||| || ||| |||||||||| |||||||||| || || |||| |||||||||| |||||||||| TTACTTTCTG TTGATATTAT ATTGAAATGT TA-AGGTTAG ATTGGTTGGT TCGCTCACAT 358 AGGAGGGTAA GTGTGGGTGC CAGTCACGGT CCGGATTTGG GTCGTGACA 5397 |||||||||| |||||||||| ||||| | |||| ||| | ||||||||| AGGAGGGTAA GTGTGGGTGC CAGTCGCAAC CCGG-TTTTG GTCGTGACA 406 hqPGS_C06HBa0158P14.1-16-_SGN-E392027- (5781 5397) ******************************************************************************** EST sequence 24 -strand 840 n (File: SGN-E542084-) 1 GTTGCTGTAC ATATTCTACA AGGCATAATT TTCTTGAAAT TCCCAATATT GACACCTCAA 61 TGCAGCAAAC ATCATCTTTG CATAGAGATG GTTTTCCAAA ACAGACAGCA TTTATCATCT 121 GAGAAATTTC GGGGCTTTCT GAAAAAGAAA TAGAGTAGTC AGGAACTATC AACATGTATA 181 TAAAGCATCT AACTTTTCTA ATGACATCTT CATGGATGAT GTTGTCCAAC ACGAAGGTCT 241 CAGATGATCT CCAAACTAAA TCACCAAATG AGAGTGTTAT TTCTGCGTAA GCTCTTCCAT 301 CGCGTCTGCT AGCTTACACT CTCATTTACT TTGCAATGGG ATTCCTCTTT GGTTCCTCCT 361 TCAGCTTCTT CTCATTCCCG GTGTGCTTTC CCTTCTCCTC CGTCCACTGA TTTTAGCAAA 421 CGTGCCGTCA TCTTCGACTC AACAGTAACT CTAGCCAGTC TTCATTACTT CGGATATCAG 481 GGTGAGCTAA TGCTTTCTAG ATTGGACTGG ATCTTCCTCT TCATGTCTTG ATGTCTTGAA 541 GTTCCGGCAT GGACTAGCTT TTATGTATTT TTTAGCTTCT TAGAAACTCT TAGATTTAGT 601 AATTTGAAGT AGATGTTCTT ATGATGATGA CTTCCAGATT TTGGGAAATA ATAGTTATTG 661 AATTGGTTTT CATTAATAAG TTTAAGTCTT CCGCATTACT TTATGTTGAT ATTACATTGA 721 AATGTTAAGG TTTGGATTGG TTGGTTCGCT CACATAGCAG GGTAAGTGTG GGTGCCAGTC 781 GCGATCCGAT TTGGGTCGTG ACATTTATAG AAGTAAGAAA TTTTCCCCTA AAAAAAAAAA Predicted gene structure (within gDNA segment 9099 to 4436): Exon 1 7701 7688 ( 14 n); cDNA 403 416 ( 14 n); score: 0.857 Intron 1 7687 5779 (1909 n); Pd: 0.380 (s: 0), Pa: 0.961 (s: 0.88) Exon 2 5778 5398 ( 381 n); cDNA 417 802 ( 386 n); score: 0.840 PPA cDNA 830 840 MATCH C06HBa0158P14.1-16- SGN-E542084- 0.840 395 0.470 C PGS_C06HBa0158P14.1-16-_SGN-E542084- (7701 7688,5778 5398) Alignment (genomic DNA sequence = upper lines): TCCATTTATT TTAGGTTATT AGTTTGCTAT TATATAAGAT TTTGTCTATA TAATTTTTTT 7642 |||| | ||| |||| TCCACTGATT TTAG...... .......... .......... .......... .......... 416 TCATACTATA GGTAAACTTC TTTGATTGTT AGATTTAAAA TCTTGAAATA AAATAGGTAC 7582 .......... .......... .......... .......... .......... .......... 416 CTTCTACATT ATATAAATAT GACCCTAATG CTACAAAATT ATTTGGCTAA AAAATTATTT 7522 .......... .......... .......... .......... .......... .......... 416 GGTCCAATAT ATTCCTATTT GTTGAAATGA TTTCCCTACT TAATAATTGA CACTAGATCT 7462 .......... .......... .......... .......... .......... .......... 416 TGCCTTGTGT TATAATTGAA GATATATTTG ATACCACATG CCTATTTTAA TCAAAGTTGT 7402 .......... .......... .......... .......... .......... .......... 416 ATTTAAAATT CTGATTCCAC GTTCGTTACA GTTAAACTTT TTTAGTTTAT TTTTAAAAAA 7342 .......... .......... .......... .......... .......... .......... 416 AAGATAGTTT ATTAAGGATT TTCTTCCCTT CTTCTACCTT GTTGTCCGAT AATATATAGC 7282 .......... .......... .......... .......... .......... .......... 416 TTGTAACGAC CTGTTTAGTC ATTTTGAGCA GCAGATTTTA TTTCTGGAAA AATAGGCTGA 7222 .......... .......... .......... .......... .......... .......... 416 GGCAACGGAT CCCACGACGG ACCGTCATGG GCACGACGGA CCGTCGCAGG GTCTCGTTTC 7162 .......... .......... .......... .......... .......... .......... 416 AAAACACTTA GAAAATCTGA AATTGGGTAC TGAAAATCGA CTCTCTGAAC TTCGTGACGG 7102 .......... .......... .......... .......... .......... .......... 416 AATGGCAGGA CGGACCGTCA CAGGCGTGAC GGACCGTCAC AGAGCCTTCA GTGAAAACCC 7042 .......... .......... .......... .......... .......... .......... 416 ATTCTCTGAA CCTTACGACG ACTTGCAGGA CGGACCGTCG TAGGCACGAC GGGCCGTCGC 6982 .......... .......... .......... .......... .......... .......... 416 AGGCTACGCA ATCCCAGGCT GTGTCGGATT TCTGTTAATT TATTTAAGGG GCATTTTGGA 6922 .......... .......... .......... .......... .......... .......... 416 CTATTTCCTA CTTTAATTAT AAAGTGGTGG GTTAATGTTA ATAAGTCTAA TTACTTGGGG 6862 .......... .......... .......... .......... .......... .......... 416 GTTAAAAGAG GTAACCTTAA GTTAACTAGT GGGTTATCTT TTATACTTAA TTATATGTTA 6802 .......... .......... .......... .......... .......... .......... 416 ATTAGGGTAA AAGAAAGAGG GTTGGAATAA GAAAAATAAG AAAGAACAAA GAGAGACAGA 6742 .......... .......... .......... .......... .......... .......... 416 AAAAGAAAGA AAACGAGTAG AGAGAGAGAG AAACGAAGGG AATATCAAGG ATTTTGAGAA 6682 .......... .......... .......... .......... .......... .......... 416 GATAGCTTGT TGATCGCAAT TCTTCGGTGG AGGTAGGTTA TGGTTATTTC ATGCTATTCG 6622 .......... .......... .......... .......... .......... .......... 416 TAGTAAACTC TTAATAGCGA ATGATATGTG TTAGTAGTAT TGTGAACCTT CTATATGCTT 6562 .......... .......... .......... .......... .......... .......... 416 AATTGTATGC TTGCATGAAT GATGTGATTA TGTAATTATG AATAAATAAG CATGATGAAG 6502 .......... .......... .......... .......... .......... .......... 416 CTATTTAATC CCAAATCTTG AAAAGAAACC ATAATCTACT TTGTTAATGA TGATGCCTTG 6442 .......... .......... .......... .......... .......... .......... 416 GTATAAAAGA AGGCTTGATG AATGAAAGTA GTGAGATTAG GGGATCGGGT GCCACGTTCC 6382 .......... .......... .......... .......... .......... .......... 416 GGTACCAGGA TAGTATATGA GGATCGGAGT ATCACGTTCC GACACCAGGA TAATATATGG 6322 .......... .......... .......... .......... .......... .......... 416 ATCGGGTGCC ACGTTCCGGT ACCAGGATAG AATATGGATC GGGTGTCACG TTCCAACACC 6262 .......... .......... .......... .......... .......... .......... 416 AGGATAGAAT ATGGATCGGG TGCCACGTTC CGGTACCAGG GTAGAATATG GATCGGGTGT 6202 .......... .......... .......... .......... .......... .......... 416 CACGTTCCGA CACCAGGATA GAATATGGAT CGGGTGCCAC GTTCCGGTAC CAGGATAATA 6142 .......... .......... .......... .......... .......... .......... 416 TATGAGGATC GGAGTGTCAC GTTCCGACAC CAGGATAGTA TATTGAGGAG CGGAGTGTCA 6082 .......... .......... .......... .......... .......... .......... 416 CGTACCGACA CGAGGGGAAT AAAGATAATG AATTTTGAAA GATGTTAATA TGTTCAATCT 6022 .......... .......... .......... .......... .......... .......... 416 AATGAACCTA ATTCCCAAAT GAGTATGATG AGGAGGCGTG AGTCCTCATT GATGTGCTTG 5962 .......... .......... .......... .......... .......... .......... 416 GTGTTGCAAC CAAGGGTTAT GGTAACTGTA AATGCTGCAT GCTAAGGATA TTAGTTGATT 5902 .......... .......... .......... .......... .......... .......... 416 TTATGATATT GCTTAACATA TACTGTTTTC TATTTTGAGT TGGCCGATGA TATCTACTCA 5842 .......... .......... .......... .......... .......... .......... 416 GTACCCGTGT TTTGTACTGA CCCCTACTTT TATGTTTTCT TCTTTGTTAT TTGTGGAGTG 5782 .......... .......... .......... .......... .......... .......... 416 CAGCAAACGT GCCGTCGTCT TCAACTCAAC AGTAATTCAA GCCAGTCTTT ACTACACCGG 5722 ||||||| |||||| ||| || ||||||| ||||| || | ||||||||| | ||| ||| ...CAAACGT GCCGTCATCT TCGACTCAAC AGTAACTCTA GCCAGTCTTC ATTACTTCGG 473 AAATTCAGGG TGAGCTAATG -TTTCTAGCT TGGACTGGAT CTTTTTCTTC AAGTCTTGAT 5663 | | |||||| |||||||||| ||||||| | |||||||||| ||| ||||| | |||||||| ATA-TCAGGG TGAGCTAATG CTTTCTAGAT TGGACTGGAT CTTCCTCTTC ATGTCTTGAT 532 GCCTTGAACT TCCGGCATGG ACTAGCTTTT A-CT-TGTTT TAGCTT-TTA GAATACTCTT 5606 | |||||| | |||||||||| |||||||||| | | | ||| |||||| ||| ||| |||||| GTCTTGAAGT TCCGGCATGG ACTAGCTTTT ATGTATTTTT TAGCTTCTTA GAA-ACTCTT 591 AG-TTTAGTA ATTGATCATA GATGTTCTTG TGATGATGAC TTCCAGATTT TGGGAAATAA 5547 || ||||||| ||| || ||||||||| |||||||||| |||||||||| |||||||||| AGATTTAGTA ATTTGAAGTA GATGTTCTTA TGATGATGAC TTCCAGATTT TGGGAAATAA 651 TA-ATAGT-T ATTGATTTT- ATTAATGAGT TTAAGTCTTC CGCATTATTT ACTGTTGATA 5490 || || | |||| |||| |||||| ||| |||||||||| ||||||| || |||||||| TAGTTATTGA ATTGGTTTTC ATTAATAAGT TTAAGTCTTC CGCATTACTT TATGTTGATA 711 TTATATTGAA ATGTTAGAGT TTAGATTGGT TGGTTCGCTC ACATAGGAGG GTAAGTGTGG 5430 ||| |||||| |||||| || || ||||||| |||||||||| |||||| ||| |||||||||| TTACATTGAA ATGTTAAGGT TTGGATTGGT TGGTTCGCTC ACATAGCAGG GTAAGTGTGG 771 GTGCCAGTCA CGGTCCGGAT TTGGGTCGTG AC 5398 ||||||||| || ||| ||| |||||||||| || GTGCCAGTCG CGATCC-GAT TTGGGTCGTG AC 802 hqPGS_C06HBa0158P14.1-16-_SGN-E542084- (5778 5398) ******************************************************************************** EST sequence 52 +strand 405 n (File: SGN-E336814+) 1 CCCAAAGCAA ACAAAGCACT TCATGATCAT GGATTGACAT ATTGCTAATT TTCATTATCT 61 TCTGCTTTCC CTTGCATTAT TTTTTATGAC AAGGAAACCC GCAACTACTC CTTTGCAATA 121 GCTTGCAAAT CACACAAGAG AGCAAACGTG CCGTCATCTT CGACTCAACA GTAACTCTAG 181 CCAGTCTTCA TTATTCCGGA TATTAAGGTG AGCTAATGTT TCTAGCTTGG ACTGGATCTT 241 CCTCTTCATG TCTTGATGTC TTGAAGTTCC GGCATGGACT AGCTTTCTTG TATTTTAGCT 301 TTTTAGAACA CTCTTAGTTT AGTACTTTGA TCATAGATGT TCTTGTGGTG ATGACTTCCA 361 GATTTTGGGG ATAATAATAG TTATTGATTT TATTAAAAAA AAAAA Predicted gene structure (within gDNA segment 8973 to 4825): Exon 1 6429 6407 ( 23 n); cDNA 121 142 ( 22 n); score: 0.652 Intron 1 6406 5779 ( 628 n); Pd: 0.000 (s: 0), Pa: 0.961 (s: 0.88) Exon 2 5778 5516 ( 263 n); cDNA 143 405 ( 263 n); score: 0.859 MATCH C06HBa0158P14.1-16- SGN-E336814+ 0.859 286 0.706 C PGS_C06HBa0158P14.1-16-_SGN-E336814+ (6429 6407,5778 5516) Alignment (genomic DNA sequence = upper lines): GCTTGATGAA TGAAAGTAGT GAGATTAGGG GATCGGGTGC CACGTTCCGG TACCAGGATA 6370 ||||| || | | | || ||| GCTTG-CAAA TCACACAAGA GAG....... .......... .......... .......... 142 GTATATGAGG ATCGGAGTAT CACGTTCCGA CACCAGGATA ATATATGGAT CGGGTGCCAC 6310 .......... .......... .......... .......... .......... .......... 142 GTTCCGGTAC CAGGATAGAA TATGGATCGG GTGTCACGTT CCAACACCAG GATAGAATAT 6250 .......... .......... .......... .......... .......... .......... 142 GGATCGGGTG CCACGTTCCG GTACCAGGGT AGAATATGGA TCGGGTGTCA CGTTCCGACA 6190 .......... .......... .......... .......... .......... .......... 142 CCAGGATAGA ATATGGATCG GGTGCCACGT TCCGGTACCA GGATAATATA TGAGGATCGG 6130 .......... .......... .......... .......... .......... .......... 142 AGTGTCACGT TCCGACACCA GGATAGTATA TTGAGGAGCG GAGTGTCACG TACCGACACG 6070 .......... .......... .......... .......... .......... .......... 142 AGGGGAATAA AGATAATGAA TTTTGAAAGA TGTTAATATG TTCAATCTAA TGAACCTAAT 6010 .......... .......... .......... .......... .......... .......... 142 TCCCAAATGA GTATGATGAG GAGGCGTGAG TCCTCATTGA TGTGCTTGGT GTTGCAACCA 5950 .......... .......... .......... .......... .......... .......... 142 AGGGTTATGG TAACTGTAAA TGCTGCATGC TAAGGATATT AGTTGATTTT ATGATATTGC 5890 .......... .......... .......... .......... .......... .......... 142 TTAACATATA CTGTTTTCTA TTTTGAGTTG GCCGATGATA TCTACTCAGT ACCCGTGTTT 5830 .......... .......... .......... .......... .......... .......... 142 TGTACTGACC CCTACTTTTA TGTTTTCTTC TTTGTTATTT GTGGAGTGCA GCAAACGTGC 5770 ||||||||| .......... .......... .......... .......... .......... .CAAACGTGC 151 CGTCGTCTTC AACTCAACAG TAATTCAAGC CAGTCTTTAC TACACCGGAA ATTCAGGGTG 5710 |||| ||||| ||||||||| ||| || ||| ||||||| | || ||||| ||| | |||| CGTCATCTTC GACTCAACAG TAACTCTAGC CAGTCTTCAT TATTCCGGAT ATT-AAGGTG 210 AGCTAATGTT TCTAGCTTGG ACTGGATCTT TTTCTTCAAG TCTTGATGCC TTGAACTTCC 5650 |||||||||| |||||||||| |||||||||| |||||| | |||||||| | ||||| |||| AGCTAATGTT TCTAGCTTGG ACTGGATCTT CCTCTTCATG TCTTGATGTC TTGAAGTTCC 270 GGCATGGACT AGCTTTTACT TGTTTTAGC- TTTTAGAATA CTCTTAGTTT AGTA-ATTGA 5592 |||||||||| |||||| | ||||||| |||||||| | |||||||||| |||| |||| GGCATGGACT AGCTTTCTTG TATTTTAGCT TTTTAGAACA CTCTTAGTTT AGTACTTTGA 330 TCATAGATGT TCTTGTGATG ATGACTTCCA GATTTTGGGA AATAATAATA GTTATTGATT 5532 |||||||||| ||||||| || |||||||||| ||||||||| ||||||||| |||||||||| TCATAGATGT TCTTGTGGTG ATGACTTCCA GATTTTGGG- GATAATAATA GTTATTGATT 389 TTATTAATGA GTTTAA 5516 ||||||| | || TTATTAAAAA AAAAAA 405 hqPGS_C06HBa0158P14.1-16-_SGN-E336814+ (5778 5516) ******************************************************************************** EST sequence 50 +strand 299 n (File: SGN-E373117+) 1 TCTTCTAGCT TGTCCAAATA CTGTCGTAAT TTTGGCAAAC GTACCGTCGT CTTCAACTCA 61 ACCGCAACTC TAGCCAGTCT TCATTACATC GGATTTCAGG GTGAGCTAAC GCTTCTAGCT 121 TGGACTGGAT CTTCTTCTTC ATGTCTTGAT GCCTTGAAGT TCCGGCATGG ACTAGCTGTT 181 TATGTATTTT AGCTTCTTAG ATACTCTTAG ATTTAGTAAT TTGAAGTAGA TGTTCTTGTG 241 ATGATGACTT CCAGATTTTG GGGATAATAA TAGTTGTTGA GTTTTTAGAA AAAAAAAAA Predicted gene structure (within gDNA segment 7420 to 4573): Exon 1 5778 5516 ( 263 n); cDNA 36 298 ( 263 n); score: 0.831 MATCH C06HBa0158P14.1-16- SGN-E373117+ 0.831 263 0.880 C PGS_C06HBa0158P14.1-16-_SGN-E373117+ (5778 5516) Alignment (genomic DNA sequence = upper lines): CAAACGTGCC GTCGTCTTCA ACTCAACAGT AATTCAAGCC AGTCTTTACT ACACCGGAAA 5719 ||||||| || |||||||||| ||||||| | || || |||| |||||| | | ||| ||| | CAAACGTACC GTCGTCTTCA ACTCAACCGC AACTCTAGCC AGTCTTCATT ACATCGG-AT 94 TTCAGGGTGA GCTAATGTTT CTAGCTTGGA CTGGATCTTT TTCTTCAAGT CTTGATGCCT 5659 |||||||||| ||||| | || |||||||||| ||||||||| ||||||| || |||||||||| TTCAGGGTGA GCTAACGCTT CTAGCTTGGA CTGGATCTTC TTCTTCATGT CTTGATGCCT 154 TGAACTTCCG GCATGGACTA GCT-TTTACT TGTTTTAGCT T-TTAGAATA CTCTTAG-TT 5602 |||| ||||| |||||||||| ||| |||| | |||||||| | |||| ||| ||||||| || TGAAGTTCCG GCATGGACTA GCTGTTTATG TATTTTAGCT TCTTAG-ATA CTCTTAGATT 213 TAGTAATTGA TCATAGATGT TCTTGTGATG ATGACTTCCA GATTTTGGGA AATAATAATA 5542 |||||||| ||||||| |||||||||| |||||||||| ||||||||| ||||||||| TAGTAATTTG AAGTAGATGT TCTTGTGATG ATGACTTCCA GATTTTGGG- GATAATAATA 272 GTTATTGATT TTATTAATGA GTTTAA 5516 ||| |||| | || | | | || GTTGTTGAGT TTTTAGAAAA AAAAAA 298 hqPGS_C06HBa0158P14.1-16-_SGN-E373117+ (5778 5516) ******************************************************************************** EST sequence 21 -strand 299 n (File: SGN-E373116-) 1 CTCTTCTAGC TTGTCCAAAT ACTGTCGTAA TTTTGGCAAA CGTACCGTCG TCTTCAACTC 61 AACCGCAACT CTAGCCAGTC TTCATTACAT CGGATTTCAG GGTGAGCTAA CGCTTCTAGC 121 TTGGACTGGA TCTTCTTCTT CATGTCTTGA TGCCTTGAAG TTCCGGCATG GACTAGCTGT 181 TTATGTATTT TAGCTTCTTA GATACTCTTA GATTTAGTAA TTTGAAGTAG ATGTTCTTGT 241 GATGATGACT TCCAGATTTT GGGGATAATA ATAGTTGTTG AGTTTTTAGA AAAAAAAAA Predicted gene structure (within gDNA segment 7440 to 4593): Exon 1 5778 5516 ( 263 n); cDNA 37 299 ( 263 n); score: 0.831 MATCH C06HBa0158P14.1-16- SGN-E373116- 0.831 263 0.880 C PGS_C06HBa0158P14.1-16-_SGN-E373116- (5778 5516) Alignment (genomic DNA sequence = upper lines): CAAACGTGCC GTCGTCTTCA ACTCAACAGT AATTCAAGCC AGTCTTTACT ACACCGGAAA 5719 ||||||| || |||||||||| ||||||| | || || |||| |||||| | | ||| ||| | CAAACGTACC GTCGTCTTCA ACTCAACCGC AACTCTAGCC AGTCTTCATT ACATCGG-AT 95 TTCAGGGTGA GCTAATGTTT CTAGCTTGGA CTGGATCTTT TTCTTCAAGT CTTGATGCCT 5659 |||||||||| ||||| | || |||||||||| ||||||||| ||||||| || |||||||||| TTCAGGGTGA GCTAACGCTT CTAGCTTGGA CTGGATCTTC TTCTTCATGT CTTGATGCCT 155 TGAACTTCCG GCATGGACTA GCT-TTTACT TGTTTTAGCT T-TTAGAATA CTCTTAG-TT 5602 |||| ||||| |||||||||| ||| |||| | |||||||| | |||| ||| ||||||| || TGAAGTTCCG GCATGGACTA GCTGTTTATG TATTTTAGCT TCTTAG-ATA CTCTTAGATT 214 TAGTAATTGA TCATAGATGT TCTTGTGATG ATGACTTCCA GATTTTGGGA AATAATAATA 5542 |||||||| ||||||| |||||||||| |||||||||| ||||||||| ||||||||| TAGTAATTTG AAGTAGATGT TCTTGTGATG ATGACTTCCA GATTTTGGG- GATAATAATA 273 GTTATTGATT TTATTAATGA GTTTAA 5516 ||| |||| | || | | | || GTTGTTGAGT TTTTAGAAAA AAAAAA 299 hqPGS_C06HBa0158P14.1-16-_SGN-E373116- (5778 5516) ******************************************************************************** EST sequence 57 +strand 219 n (File: SGN-E298638+) 1 TCATTACATC GGATTTCAGG GTGAGCTAAC GCTTCTAGCT TGGACTGGAT CTTCTTCTTC 61 ATGTCTTGAT GCCTTGAAGT TCCGGCATGG ACTAGCTGTT TATGTATTTT AGCTTCTTAG 121 ATACTCTTAG ATTTAGTAAT TTGAAGTACA TGTTCTTGTG ATGATGACTG CCAGATTTTG 181 GGGATAATAA TAGTTGTTGA GTTTTTAGAA AAAAAAAAA Predicted gene structure (within gDNA segment 6620 to 3806): Exon 1 5729 5516 ( 214 n); cDNA 5 218 ( 214 n); score: 0.815 MATCH C06HBa0158P14.1-16- SGN-E298638+ 0.815 214 0.977 C PGS_C06HBa0158P14.1-16-_SGN-E298638+ (5729 5516) Alignment (genomic DNA sequence = upper lines): TACACCGGAA ATTCAGGGTG AGCTAATGTT TCTAGCTTGG ACTGGATCTT TTTCTTCAAG 5670 |||| ||| | ||||||||| |||||| | | |||||||||| |||||||||| ||||||| | TACATCGG-A TTTCAGGGTG AGCTAACGCT TCTAGCTTGG ACTGGATCTT CTTCTTCATG 63 TCTTGATGCC TTGAACTTCC GGCATGGACT AGCT-TTTAC TTGTTTTAGC TT-TTAGAAT 5612 |||||||||| ||||| |||| |||||||||| |||| |||| | ||||||| || |||| || TCTTGATGCC TTGAAGTTCC GGCATGGACT AGCTGTTTAT GTATTTTAGC TTCTTAG-AT 122 ACTCTTAG-T TTAGTAATTG ATCATAGATG TTCTTGTGAT GATGACTTCC AGATTTTGGG 5553 |||||||| | ||||||||| || ||| |||||||||| ||||||| || |||||||||| ACTCTTAGAT TTAGTAATTT GAAGTACATG TTCTTGTGAT GATGACTGCC AGATTTTGGG 182 AAATAATAAT AGTTATTGAT TTTATTAATG AGTTTAA 5516 |||||||| |||| |||| ||| | | | || -GATAATAAT AGTTGTTGAG TTTTTAGAAA AAAAAAA 218 hqPGS_C06HBa0158P14.1-16-_SGN-E298638+ (5729 5516) ******************************************************************************** EST sequence 41 -strand 265 n (File: SGN-E216150-) 1 AGTAACTCAA GCCAGTCCTA CTACATCGGA AATTCAGGGT GAGCTAATGC TTCTAGGTTT 61 GACTGGATCT TCTTCTTCAA GTCTTGATGC CTTGAACTTC CGGCATGGAC TAGCTTCGTA 121 TGTATTTTTA GCTTCTTAGA ATACTCTTAG TTTAGTAATT TTATGATAGA GGCTCTGGTG 181 ATGATGACTT CCAGATTTTG GGGAATGATA AGTTTTGAGT TATACAAGTT GATTATTGAT 241 TTTTATTAAA AAAAAAAAAA AAAAA Predicted gene structure (within gDNA segment 7008 to 4323): Exon 1 5751 5545 ( 207 n); cDNA 1 210 ( 210 n); score: 0.860 PPA cDNA 248 265 MATCH C06HBa0158P14.1-16- SGN-E216150- 0.860 207 0.781 C PGS_C06HBa0158P14.1-16-_SGN-E216150- (5751 5545) Alignment (genomic DNA sequence = upper lines): AGTAATTCAA GCCAGTCTTT ACTACACCGG AAATTCAGGG TGAGCTAATG TTTCTAGCTT 5692 ||||| |||| ||||||| | |||||| ||| |||||||||| |||||||||| |||||| || AGTAACTCAA GCCAGTC-CT ACTACATCGG AAATTCAGGG TGAGCTAATG CTTCTAGGTT 59 GGACTGGATC TTTTTCTTCA AGTCTTGATG CCTTGAACTT CCGGCATGGA CTAGCTT-TT 5633 ||||||||| || ||||||| |||||||||| |||||||||| |||||||||| ||||||| | TGACTGGATC TTCTTCTTCA AGTCTTGATG CCTTGAACTT CCGGCATGGA CTAGCTTCGT 119 A-CTTGTTTT AGCTT-TTAG AATACTCTTA GTTTAGTAA- TTGATCATAG ATGTTCTTGT 5576 | | |||| ||||| |||| |||||||||| ||||||||| || || |||| | | ||| || ATGTATTTTT AGCTTCTTAG AATACTCTTA GTTTAGTAAT TTTATGATAG AGGCTCTGGT 179 GATGATGACT TCCAGATTTT GGGAAATAAT A 5545 |||||||||| |||||||||| ||| ||| || | GATGATGACT TCCAGATTTT GGGGAATGAT A 210 hqPGS_C06HBa0158P14.1-16-_SGN-E216150- (5751 5545) ******************************************************************************** EST sequence 63 +strand 620 n (File: SGN-E238551+) 1 ACGCCTTTTG CTTTATGAAA CTAAAAAATA AAAATTGAAG TTTTGAAACG ATAGAGGTTT 61 AAAATTTGAA AGTCTGCTTA GAGAGTTAAG GCTTAGAAAG TTTAACTAAG ACGGAATCTT 121 AAAAGATTAA TATCTCAAAT TTGCAAAGTT TGGCTAAGTA AATCGTGATA AAAGTTCAAA 181 TAAATTTGCA AAGGGTAAAA ATAAAAATAA TCAAATAAGT TAGTCGTTGG AAAACCGTAT 241 TTAACGGAGT GTCTTAGGTG CCTTAAACAC CTTCCTAAGA CGCTAATAAG AATCCCGAAT 301 CCTAAAAAAT ATTTTCAAAA CGACTTTTCT GTTTAAATTG TTTTGAGAAT GAGTTTTCTT 361 GATTTTTCTT AAAAATTAAG TGGCGACTCC TAAAGTCGAA AAATACTTTA AAATAAAACA 421 AACTCTTTTC GAAAAATCAC CTTTTTTCGA TAAAACAAAG CTTCTAGCTT GGACTGGATC 481 TTCTTCTTCA TGTCTTGATG CCTTGAAGTT CCGGCATGGA CTAGCTGTTT ATGTATTTTA 541 GCTTCTTAGA TACTCTTAGA TTTAGTAATT CGAAGTAGAT GTTCTTGTGA TGATAACTTC 601 CAGATTTTGG GAAATAATAG Predicted gene structure (within gDNA segment 9099 to 4925): Exon 1 9089 8991 ( 99 n); cDNA 343 437 ( 95 n); score: 0.591 Intron 1 8990 7251 (1740 n); Pd: 0.000 (s: 0.66), Pa: 0.693 (s: 0) Exon 2 7250 7231 ( 20 n); cDNA 438 455 ( 18 n); score: 0.650 Intron 2 7230 5708 (1523 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.90) Exon 3 5707 5545 ( 163 n); cDNA 456 619 ( 164 n); score: 0.853 MATCH C06HBa0158P14.1-16- SGN-E238551+ 0.754 282 0.455 C PGS_C06HBa0158P14.1-16-_SGN-E238551+ (9089 8991,7250 7231,5707 5545) Alignment (genomic DNA sequence = upper lines): TTTATAAT-A TTTTTTTTAT TTAAATTTTT TAATTTAAAA TATCAAATTA ATATAATCTA 9031 || | ||| | |||| || || || || || | || | | | | || | || | TTGAGAATGA GTTTTCTTGA TT--TTTCTT AAAAATTAAG TGGCGACT-C CTAAAGTCGA 399 TTTTAACTTT AAAAAATAAT AAATTTAACT TTCGAAAAAT ATAATATAAC AACTAAAAAA 8971 ||||| |||| | || ||| | | |||||||||| AAAATACTTT AAAATAAAAC AAA-CT-CTT TTCGAAAAAT .......... .......... 437 AACCAATGAA ATAACATTCA TTAAAGTTAT AGCAGTGTAT TTTATTTTAC CTGCTCCTTA 8911 .......... .......... .......... .......... .......... .......... 437 TTGTAAAAGC AATTTATTTT TTTACATTTG TTCATAAAAA AAATAATTTA TTACTAGTTC 8851 .......... .......... .......... .......... .......... .......... 437 TTTTCAACAG TTTATATATC AAATTTAAGA AAAAAGGTAA TGGATCGTTA TAGAGGCCCC 8791 .......... .......... .......... .......... .......... .......... 437 TTTAATTTCA GCCCCCTATT TATTTATTTT TACATATGTA TACATTATAC TCTTTTGTTT 8731 .......... .......... .......... .......... .......... .......... 437 TAATGTATAT AATGATGTTT TAATTTTATG AGTCAAATGA GTTACCTTTT ACTATAATAT 8671 .......... .......... .......... .......... .......... .......... 437 TTTATATTAT TAACTATTGT GACTTCAATA CTTATTATAT AGTTTCAAAC ATATAAATTT 8611 .......... .......... .......... .......... .......... .......... 437 TATTTTTAAA AATTTATATT TAAGCATACA ATCAAAGTTC AAAAGTTCTT ATCCCCAAAA 8551 .......... .......... .......... .......... .......... .......... 437 GTGAAAAATA ACATATAATT CGATATACAG AGAGTATTTA AATTTGGGCA ACTTTCACAT 8491 .......... .......... .......... .......... .......... .......... 437 ATAGCAAATA AAAAATTCAT ATTTGTATGC TATAGCAAAG TTTGCATAAT TGCGCTCAAT 8431 .......... .......... .......... .......... .......... .......... 437 AGCAAACATT GAAACTGTAT AATTCGCTAT ACATATACAT TTGAAGCAAA TTGTATAAAA 8371 .......... .......... .......... .......... .......... .......... 437 CAGAGTGCAT AAAACAAGAA AGAGAAAGAC ACTTGGGCAG AGAACTGTAT AAAAATGATA 8311 .......... .......... .......... .......... .......... .......... 437 TGTATAAAAC GAATTGTATT ATTATAAGTG TATAGAATAA TTATATACAA TTTGAATTTG 8251 .......... .......... .......... .......... .......... .......... 437 TATAAAATGA GAAAGAGAGA AAGACAAAAG AGACTTGACA AGGAATATAC AATTGAATCG 8191 .......... .......... .......... .......... .......... .......... 437 AATTGTATAA AATGAGAAAG AGAGAAATTA GATACAATTT GAAAATTGTA TAAAATGAGA 8131 .......... .......... .......... .......... .......... .......... 437 AAGAGAGAAA GGCAAAAGAA ATTGCGCAGG GGAGTATTTA TTGTATAATT ATAAGTGTAT 8071 .......... .......... .......... .......... .......... .......... 437 AGGACGAAAA TATATGTACT TGCAAGTGTA TATACAATTT TCTCACGCTT TATACAAACA 8011 .......... .......... .......... .......... .......... .......... 437 AAAACACAAT TTATACACTT CACTTCTGTT TGTATAAGTG AGAAAGGCGG GGGTGGCGAG 7951 .......... .......... .......... .......... .......... .......... 437 CAAGATTTGG GAGAGTGGCG AGCGAGATCT GGAAGAGGGG AGAGAGGAGA ACAAAAATAT 7891 .......... .......... .......... .......... .......... .......... 437 ATGTATTTAT ACAATTTTCT CTACTTTATC AATTATAAAC AATTTTTATA CACTTCTGTT 7831 .......... .......... .......... .......... .......... .......... 437 TGTATAAAAA GTGAGGAAGC GAACGAGAGA TTAGAGGAGA GTAGCGAGCG AGATATTTGG 7771 .......... .......... .......... .......... .......... .......... 437 GAGAGAGGCG CCTGACAATT TTTTTGCAAA CGTTAGCTAT GGAGCACAAT TAAATCAAAC 7711 .......... .......... .......... .......... .......... .......... 437 CCTAGCTACT CCATTTATTT TAGGTTATTA GTTTGCTATT ATATAAGATT TTGTCTATAT 7651 .......... .......... .......... .......... .......... .......... 437 AATTTTTTTT CATACTATAG GTAAACTTCT TTGATTGTTA GATTTAAAAT CTTGAAATAA 7591 .......... .......... .......... .......... .......... .......... 437 AATAGGTACC TTCTACATTA TATAAATATG ACCCTAATGC TACAAAATTA TTTGGCTAAA 7531 .......... .......... .......... .......... .......... .......... 437 AAATTATTTG GTCCAATATA TTCCTATTTG TTGAAATGAT TTCCCTACTT AATAATTGAC 7471 .......... .......... .......... .......... .......... .......... 437 ACTAGATCTT GCCTTGTGTT ATAATTGAAG ATATATTTGA TACCACATGC CTATTTTAAT 7411 .......... .......... .......... .......... .......... .......... 437 CAAAGTTGTA TTTAAAATTC TGATTCCACG TTCGTTACAG TTAAACTTTT TTAGTTTATT 7351 .......... .......... .......... .......... .......... .......... 437 TTTAAAAAAA AGATAGTTTA TTAAGGATTT TCTTCCCTTC TTCTACCTTG TTGTCCGATA 7291 .......... .......... .......... .......... .......... .......... 437 ATATATAGCT TGTAACGACC TGTTTAGTCA TTTTGAGCAG CAGATTTTAT TTCTGGAAAA 7231 || |||| ||| |||| .......... .......... .......... .......... CACCTTTT-- TTCGATAAAA 455 ATAGGCTGAG GCAACGGATC CCACGACGGA CCGTCATGGG CACGACGGAC CGTCGCAGGG 7171 .......... .......... .......... .......... .......... .......... 455 TCTCGTTTCA AAACACTTAG AAAATCTGAA ATTGGGTACT GAAAATCGAC TCTCTGAACT 7111 .......... .......... .......... .......... .......... .......... 455 TCGTGACGGA ATGGCAGGAC GGACCGTCAC AGGCGTGACG GACCGTCACA GAGCCTTCAG 7051 .......... .......... .......... .......... .......... .......... 455 TGAAAACCCA TTCTCTGAAC CTTACGACGA CTTGCAGGAC GGACCGTCGT AGGCACGACG 6991 .......... .......... .......... .......... .......... .......... 455 GGCCGTCGCA GGCTACGCAA TCCCAGGCTG TGTCGGATTT CTGTTAATTT ATTTAAGGGG 6931 .......... .......... .......... .......... .......... .......... 455 CATTTTGGAC TATTTCCTAC TTTAATTATA AAGTGGTGGG TTAATGTTAA TAAGTCTAAT 6871 .......... .......... .......... .......... .......... .......... 455 TACTTGGGGG TTAAAAGAGG TAACCTTAAG TTAACTAGTG GGTTATCTTT TATACTTAAT 6811 .......... .......... .......... .......... .......... .......... 455 TATATGTTAA TTAGGGTAAA AGAAAGAGGG TTGGAATAAG AAAAATAAGA AAGAACAAAG 6751 .......... .......... .......... .......... .......... .......... 455 AGAGACAGAA AAAGAAAGAA AACGAGTAGA GAGAGAGAGA AACGAAGGGA ATATCAAGGA 6691 .......... .......... .......... .......... .......... .......... 455 TTTTGAGAAG ATAGCTTGTT GATCGCAATT CTTCGGTGGA GGTAGGTTAT GGTTATTTCA 6631 .......... .......... .......... .......... .......... .......... 455 TGCTATTCGT AGTAAACTCT TAATAGCGAA TGATATGTGT TAGTAGTATT GTGAACCTTC 6571 .......... .......... .......... .......... .......... .......... 455 TATATGCTTA ATTGTATGCT TGCATGAATG ATGTGATTAT GTAATTATGA ATAAATAAGC 6511 .......... .......... .......... .......... .......... .......... 455 ATGATGAAGC TATTTAATCC CAAATCTTGA AAAGAAACCA TAATCTACTT TGTTAATGAT 6451 .......... .......... .......... .......... .......... .......... 455 GATGCCTTGG TATAAAAGAA GGCTTGATGA ATGAAAGTAG TGAGATTAGG GGATCGGGTG 6391 .......... .......... .......... .......... .......... .......... 455 CCACGTTCCG GTACCAGGAT AGTATATGAG GATCGGAGTA TCACGTTCCG ACACCAGGAT 6331 .......... .......... .......... .......... .......... .......... 455 AATATATGGA TCGGGTGCCA CGTTCCGGTA CCAGGATAGA ATATGGATCG GGTGTCACGT 6271 .......... .......... .......... .......... .......... .......... 455 TCCAACACCA GGATAGAATA TGGATCGGGT GCCACGTTCC GGTACCAGGG TAGAATATGG 6211 .......... .......... .......... .......... .......... .......... 455 ATCGGGTGTC ACGTTCCGAC ACCAGGATAG AATATGGATC GGGTGCCACG TTCCGGTACC 6151 .......... .......... .......... .......... .......... .......... 455 AGGATAATAT ATGAGGATCG GAGTGTCACG TTCCGACACC AGGATAGTAT ATTGAGGAGC 6091 .......... .......... .......... .......... .......... .......... 455 GGAGTGTCAC GTACCGACAC GAGGGGAATA AAGATAATGA ATTTTGAAAG ATGTTAATAT 6031 .......... .......... .......... .......... .......... .......... 455 GTTCAATCTA ATGAACCTAA TTCCCAAATG AGTATGATGA GGAGGCGTGA GTCCTCATTG 5971 .......... .......... .......... .......... .......... .......... 455 ATGTGCTTGG TGTTGCAACC AAGGGTTATG GTAACTGTAA ATGCTGCATG CTAAGGATAT 5911 .......... .......... .......... .......... .......... .......... 455 TAGTTGATTT TATGATATTG CTTAACATAT ACTGTTTTCT ATTTTGAGTT GGCCGATGAT 5851 .......... .......... .......... .......... .......... .......... 455 ATCTACTCAG TACCCGTGTT TTGTACTGAC CCCTACTTTT ATGTTTTCTT CTTTGTTATT 5791 .......... .......... .......... .......... .......... .......... 455 TGTGGAGTGC AGCAAACGTG CCGTCGTCTT CAACTCAACA GTAATTCAAG CCAGTCTTTA 5731 .......... .......... .......... .......... .......... .......... 455 CTACACCGGA AATTCAGGGT GAGCTAATGT TTCTAGCTTG GACTGGATCT TTTTCTTCAA 5671 | || | |||||||||| |||||||||| | ||||||| .......... .......... ...C-AAAGC TTCTAGCTTG GACTGGATCT TCTTCTTCAT 491 GTCTTGATGC CTTGAACTTC CGGCATGGAC TAGCT-TTTA CTTGTTTTAG CTTTTAGAAT 5612 |||||||||| |||||| ||| |||||||||| ||||| |||| | |||||| ||| | || GTCTTGATGC CTTGAAGTTC CGGCATGGAC TAGCTGTTTA TGTATTTTAG CTTCTTAGAT 551 ACTCTTAG-T TTAGTAATTG ATCATAGATG TTCTTGTGAT GATGACTTCC AGATTTTGGG 5553 |||||||| | ||||||||| |||||| |||||||||| ||| |||||| |||||||||| ACTCTTAGAT TTAGTAATTC GAAGTAGATG TTCTTGTGAT GATAACTTCC AGATTTTGGG 611 AAATAATA 5545 |||||||| AAATAATA 619 hqPGS_C06HBa0158P14.1-16-_SGN-E238551+ (5707 5545) ******************************************************************************** EST sequence 65 +strand 666 n (File: SGN-E368629+) 1 ACGCCTTTTG CTTTATGAAA CTAAAAAATA AAAATTGAAG TTTTGAAACG ATAGAGGTTT 61 AAAATTTGAA AGTCTGCTTA GAGAGTTAAG GCTTAGAAAG TTTAACTAAG ACGGAATCTT 121 AAAAGATTAA TATCTCAAAT TTGCAAAGTT TGGCTAAGTA AATCGTGATA AAAGTTCAAA 181 TAAATTTGCA AAGGGTAAAA ATAAAAATAA TCAAATAAGT TAGTCGTTGG AAAACCGTAT 241 TTAACGGAGT GTCTTAGGTG CCTTAAACAC CTTCCTAAGA CGCTAATAAG AATCCCGAAT 301 CCTAAAAAAT ATTTTCAAAA CGACTTTTCT GTTTAAATTG TTTTGAGAAT GAGTTTTCTT 361 GATTTTTCTT AAAAATTAAG TGGCGACTCC TAAAGTCGAA AAATACTTTA AAATAAAACA 421 AACTCTTTTC GAAAAATCAC CTTTTTTCGA TAAAACAAAG CTTCTAGCTT GGACTGGATC 481 TTCTTCTTTA TGTCTTGATG CCTTGAAGTT TCGGCATGGA CTAACTGTGT TATGTATTTT 541 AGGCTCTTAG ATACTTCTAG ATTTAGTAAT TCGAAGTAGA TGTTCTTGTG ATGATAACTT 601 CCAGATTTTG GGAAATAATA GTTATTGAAT TGGTTTTTAT AAAAAAAAAA AAAAAAAAAA 661 AAAAAA Predicted gene structure (within gDNA segment 9099 to 4475): Exon 1 9089 8991 ( 99 n); cDNA 343 437 ( 95 n); score: 0.591 Intron 1 8990 7251 (1740 n); Pd: 0.000 (s: 0.66), Pa: 0.693 (s: 0) Exon 2 7250 7231 ( 20 n); cDNA 438 455 ( 18 n); score: 0.650 Intron 2 7230 5708 (1523 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.88) Exon 3 5707 5545 ( 163 n); cDNA 456 620 ( 165 n); score: 0.804 PPA cDNA 639 666 MATCH C06HBa0158P14.1-16- SGN-E368629+ 0.723 282 0.423 C PGS_C06HBa0158P14.1-16-_SGN-E368629+ (9089 8991,7250 7231,5707 5545) Alignment (genomic DNA sequence = upper lines): TTTATAAT-A TTTTTTTTAT TTAAATTTTT TAATTTAAAA TATCAAATTA ATATAATCTA 9031 || | ||| | |||| || || || || || | || | | | | || | || | TTGAGAATGA GTTTTCTTGA TT--TTTCTT AAAAATTAAG TGGCGACT-C CTAAAGTCGA 399 TTTTAACTTT AAAAAATAAT AAATTTAACT TTCGAAAAAT ATAATATAAC AACTAAAAAA 8971 ||||| |||| | || ||| | | |||||||||| AAAATACTTT AAAATAAAAC AAA-CT-CTT TTCGAAAAAT .......... .......... 437 AACCAATGAA ATAACATTCA TTAAAGTTAT AGCAGTGTAT TTTATTTTAC CTGCTCCTTA 8911 .......... .......... .......... .......... .......... .......... 437 TTGTAAAAGC AATTTATTTT TTTACATTTG TTCATAAAAA AAATAATTTA TTACTAGTTC 8851 .......... .......... .......... .......... .......... .......... 437 TTTTCAACAG TTTATATATC AAATTTAAGA AAAAAGGTAA TGGATCGTTA TAGAGGCCCC 8791 .......... .......... .......... .......... .......... .......... 437 TTTAATTTCA GCCCCCTATT TATTTATTTT TACATATGTA TACATTATAC TCTTTTGTTT 8731 .......... .......... .......... .......... .......... .......... 437 TAATGTATAT AATGATGTTT TAATTTTATG AGTCAAATGA GTTACCTTTT ACTATAATAT 8671 .......... .......... .......... .......... .......... .......... 437 TTTATATTAT TAACTATTGT GACTTCAATA CTTATTATAT AGTTTCAAAC ATATAAATTT 8611 .......... .......... .......... .......... .......... .......... 437 TATTTTTAAA AATTTATATT TAAGCATACA ATCAAAGTTC AAAAGTTCTT ATCCCCAAAA 8551 .......... .......... .......... .......... .......... .......... 437 GTGAAAAATA ACATATAATT CGATATACAG AGAGTATTTA AATTTGGGCA ACTTTCACAT 8491 .......... .......... .......... .......... .......... .......... 437 ATAGCAAATA AAAAATTCAT ATTTGTATGC TATAGCAAAG TTTGCATAAT TGCGCTCAAT 8431 .......... .......... .......... .......... .......... .......... 437 AGCAAACATT GAAACTGTAT AATTCGCTAT ACATATACAT TTGAAGCAAA TTGTATAAAA 8371 .......... .......... .......... .......... .......... .......... 437 CAGAGTGCAT AAAACAAGAA AGAGAAAGAC ACTTGGGCAG AGAACTGTAT AAAAATGATA 8311 .......... .......... .......... .......... .......... .......... 437 TGTATAAAAC GAATTGTATT ATTATAAGTG TATAGAATAA TTATATACAA TTTGAATTTG 8251 .......... .......... .......... .......... .......... .......... 437 TATAAAATGA GAAAGAGAGA AAGACAAAAG AGACTTGACA AGGAATATAC AATTGAATCG 8191 .......... .......... .......... .......... .......... .......... 437 AATTGTATAA AATGAGAAAG AGAGAAATTA GATACAATTT GAAAATTGTA TAAAATGAGA 8131 .......... .......... .......... .......... .......... .......... 437 AAGAGAGAAA GGCAAAAGAA ATTGCGCAGG GGAGTATTTA TTGTATAATT ATAAGTGTAT 8071 .......... .......... .......... .......... .......... .......... 437 AGGACGAAAA TATATGTACT TGCAAGTGTA TATACAATTT TCTCACGCTT TATACAAACA 8011 .......... .......... .......... .......... .......... .......... 437 AAAACACAAT TTATACACTT CACTTCTGTT TGTATAAGTG AGAAAGGCGG GGGTGGCGAG 7951 .......... .......... .......... .......... .......... .......... 437 CAAGATTTGG GAGAGTGGCG AGCGAGATCT GGAAGAGGGG AGAGAGGAGA ACAAAAATAT 7891 .......... .......... .......... .......... .......... .......... 437 ATGTATTTAT ACAATTTTCT CTACTTTATC AATTATAAAC AATTTTTATA CACTTCTGTT 7831 .......... .......... .......... .......... .......... .......... 437 TGTATAAAAA GTGAGGAAGC GAACGAGAGA TTAGAGGAGA GTAGCGAGCG AGATATTTGG 7771 .......... .......... .......... .......... .......... .......... 437 GAGAGAGGCG CCTGACAATT TTTTTGCAAA CGTTAGCTAT GGAGCACAAT TAAATCAAAC 7711 .......... .......... .......... .......... .......... .......... 437 CCTAGCTACT CCATTTATTT TAGGTTATTA GTTTGCTATT ATATAAGATT TTGTCTATAT 7651 .......... .......... .......... .......... .......... .......... 437 AATTTTTTTT CATACTATAG GTAAACTTCT TTGATTGTTA GATTTAAAAT CTTGAAATAA 7591 .......... .......... .......... .......... .......... .......... 437 AATAGGTACC TTCTACATTA TATAAATATG ACCCTAATGC TACAAAATTA TTTGGCTAAA 7531 .......... .......... .......... .......... .......... .......... 437 AAATTATTTG GTCCAATATA TTCCTATTTG TTGAAATGAT TTCCCTACTT AATAATTGAC 7471 .......... .......... .......... .......... .......... .......... 437 ACTAGATCTT GCCTTGTGTT ATAATTGAAG ATATATTTGA TACCACATGC CTATTTTAAT 7411 .......... .......... .......... .......... .......... .......... 437 CAAAGTTGTA TTTAAAATTC TGATTCCACG TTCGTTACAG TTAAACTTTT TTAGTTTATT 7351 .......... .......... .......... .......... .......... .......... 437 TTTAAAAAAA AGATAGTTTA TTAAGGATTT TCTTCCCTTC TTCTACCTTG TTGTCCGATA 7291 .......... .......... .......... .......... .......... .......... 437 ATATATAGCT TGTAACGACC TGTTTAGTCA TTTTGAGCAG CAGATTTTAT TTCTGGAAAA 7231 || |||| ||| |||| .......... .......... .......... .......... CACCTTTT-- TTCGATAAAA 455 ATAGGCTGAG GCAACGGATC CCACGACGGA CCGTCATGGG CACGACGGAC CGTCGCAGGG 7171 .......... .......... .......... .......... .......... .......... 455 TCTCGTTTCA AAACACTTAG AAAATCTGAA ATTGGGTACT GAAAATCGAC TCTCTGAACT 7111 .......... .......... .......... .......... .......... .......... 455 TCGTGACGGA ATGGCAGGAC GGACCGTCAC AGGCGTGACG GACCGTCACA GAGCCTTCAG 7051 .......... .......... .......... .......... .......... .......... 455 TGAAAACCCA TTCTCTGAAC CTTACGACGA CTTGCAGGAC GGACCGTCGT AGGCACGACG 6991 .......... .......... .......... .......... .......... .......... 455 GGCCGTCGCA GGCTACGCAA TCCCAGGCTG TGTCGGATTT CTGTTAATTT ATTTAAGGGG 6931 .......... .......... .......... .......... .......... .......... 455 CATTTTGGAC TATTTCCTAC TTTAATTATA AAGTGGTGGG TTAATGTTAA TAAGTCTAAT 6871 .......... .......... .......... .......... .......... .......... 455 TACTTGGGGG TTAAAAGAGG TAACCTTAAG TTAACTAGTG GGTTATCTTT TATACTTAAT 6811 .......... .......... .......... .......... .......... .......... 455 TATATGTTAA TTAGGGTAAA AGAAAGAGGG TTGGAATAAG AAAAATAAGA AAGAACAAAG 6751 .......... .......... .......... .......... .......... .......... 455 AGAGACAGAA AAAGAAAGAA AACGAGTAGA GAGAGAGAGA AACGAAGGGA ATATCAAGGA 6691 .......... .......... .......... .......... .......... .......... 455 TTTTGAGAAG ATAGCTTGTT GATCGCAATT CTTCGGTGGA GGTAGGTTAT GGTTATTTCA 6631 .......... .......... .......... .......... .......... .......... 455 TGCTATTCGT AGTAAACTCT TAATAGCGAA TGATATGTGT TAGTAGTATT GTGAACCTTC 6571 .......... .......... .......... .......... .......... .......... 455 TATATGCTTA ATTGTATGCT TGCATGAATG ATGTGATTAT GTAATTATGA ATAAATAAGC 6511 .......... .......... .......... .......... .......... .......... 455 ATGATGAAGC TATTTAATCC CAAATCTTGA AAAGAAACCA TAATCTACTT TGTTAATGAT 6451 .......... .......... .......... .......... .......... .......... 455 GATGCCTTGG TATAAAAGAA GGCTTGATGA ATGAAAGTAG TGAGATTAGG GGATCGGGTG 6391 .......... .......... .......... .......... .......... .......... 455 CCACGTTCCG GTACCAGGAT AGTATATGAG GATCGGAGTA TCACGTTCCG ACACCAGGAT 6331 .......... .......... .......... .......... .......... .......... 455 AATATATGGA TCGGGTGCCA CGTTCCGGTA CCAGGATAGA ATATGGATCG GGTGTCACGT 6271 .......... .......... .......... .......... .......... .......... 455 TCCAACACCA GGATAGAATA TGGATCGGGT GCCACGTTCC GGTACCAGGG TAGAATATGG 6211 .......... .......... .......... .......... .......... .......... 455 ATCGGGTGTC ACGTTCCGAC ACCAGGATAG AATATGGATC GGGTGCCACG TTCCGGTACC 6151 .......... .......... .......... .......... .......... .......... 455 AGGATAATAT ATGAGGATCG GAGTGTCACG TTCCGACACC AGGATAGTAT ATTGAGGAGC 6091 .......... .......... .......... .......... .......... .......... 455 GGAGTGTCAC GTACCGACAC GAGGGGAATA AAGATAATGA ATTTTGAAAG ATGTTAATAT 6031 .......... .......... .......... .......... .......... .......... 455 GTTCAATCTA ATGAACCTAA TTCCCAAATG AGTATGATGA GGAGGCGTGA GTCCTCATTG 5971 .......... .......... .......... .......... .......... .......... 455 ATGTGCTTGG TGTTGCAACC AAGGGTTATG GTAACTGTAA ATGCTGCATG CTAAGGATAT 5911 .......... .......... .......... .......... .......... .......... 455 TAGTTGATTT TATGATATTG CTTAACATAT ACTGTTTTCT ATTTTGAGTT GGCCGATGAT 5851 .......... .......... .......... .......... .......... .......... 455 ATCTACTCAG TACCCGTGTT TTGTACTGAC CCCTACTTTT ATGTTTTCTT CTTTGTTATT 5791 .......... .......... .......... .......... .......... .......... 455 TGTGGAGTGC AGCAAACGTG CCGTCGTCTT CAACTCAACA GTAATTCAAG CCAGTCTTTA 5731 .......... .......... .......... .......... .......... .......... 455 CTACACCGGA AATTCAGGGT GAGCTAATGT TTCTAGCTTG GACTGGATCT TTTTCTTCAA 5671 | || | |||||||||| |||||||||| | ||||| | .......... .......... ...C-AAAGC TTCTAGCTTG GACTGGATCT TCTTCTTTAT 491 GTCTTGATGC CTTGAACTTC CGGCATGGAC TAGCT-T-TT ACTTGTTTTA -GCTTTTAGA 5614 |||||||||| |||||| || |||||||||| || || | || | | ||||| ||| |||| GTCTTGATGC CTTGAAGTTT CGGCATGGAC TAACTGTGTT ATGTATTTTA GGCTCTTAG- 550 ATACTCTTAG -TTTAGTAAT TGATCATAGA TGTTCTTGTG ATGATGACTT CCAGATTTTG 5555 ||||| ||| ||||||||| | |||| |||||||||| ||||| |||| |||||||||| ATACTTCTAG ATTTAGTAAT TCGAAGTAGA TGTTCTTGTG ATGATAACTT CCAGATTTTG 610 GGAAATAATA 5545 |||||||||| GGAAATAATA 620 hqPGS_C06HBa0158P14.1-16-_SGN-E368629+ (5707 5545) ******************************************************************************** EST sequence 53 +strand 402 n (File: SGN-E352844+) 1 GGAGTGTCTT AGGTGCCTTA AACACCTTCC TAAGACGCTA ATAAGAATCC CGAATCCTAA 61 AAAATATTTT CAAAACGACT TTTCTGTTTA AATTGTTTTG AGAATGAGTT TTCTTGATTT 121 TTCTTAAAAA TTAAGTGGCG ACTCCTAAAG TCGAAAAATA CTTTAAAATA AAACAAACTC 181 TTTTCGAAAA ATCACCTTTT TTCGATAAAA CAAAGCTTCT AGCTTGGACT GGATCTTCTT 241 CTTCATGTCT TGATGCCTTG AAGTTCCGGC ATGGACTAGC TGTTTATGTA TTTTAGCTTC 301 TTAGATACTC TTAGATTTAG TAATTCGAAG TAGATGTTCT TGTGATGATA ACTTCCAGAT 361 TTTGGGAAAT AATAGTTATT GAATTGGTTT TTATAAAAAA AA Predicted gene structure (within gDNA segment 8460 to 4655): Exon 1 6794 6784 ( 11 n); cDNA 206 216 ( 11 n); score: 0.818 Intron 1 6783 5701 (1083 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.94) Exon 2 5700 5545 ( 156 n); cDNA 217 374 ( 158 n); score: 0.869 MATCH C06HBa0158P14.1-16- SGN-E352844+ 0.869 167 0.415 C PGS_C06HBa0158P14.1-16-_SGN-E352844+ (6794 6784,5700 5545) Alignment (genomic DNA sequence = upper lines): TAAAAGAAAG AGGGTTGGAA TAAGAAAAAT AAGAAAGAAC AAAGAGAGAC AGAAAAAGAA 6735 ||||| |||| TAAAACAAAG C......... .......... .......... .......... .......... 216 AGAAAACGAG TAGAGAGAGA GAGAAACGAA GGGAATATCA AGGATTTTGA GAAGATAGCT 6675 .......... .......... .......... .......... .......... .......... 216 TGTTGATCGC AATTCTTCGG TGGAGGTAGG TTATGGTTAT TTCATGCTAT TCGTAGTAAA 6615 .......... .......... .......... .......... .......... .......... 216 CTCTTAATAG CGAATGATAT GTGTTAGTAG TATTGTGAAC CTTCTATATG CTTAATTGTA 6555 .......... .......... .......... .......... .......... .......... 216 TGCTTGCATG AATGATGTGA TTATGTAATT ATGAATAAAT AAGCATGATG AAGCTATTTA 6495 .......... .......... .......... .......... .......... .......... 216 ATCCCAAATC TTGAAAAGAA ACCATAATCT ACTTTGTTAA TGATGATGCC TTGGTATAAA 6435 .......... .......... .......... .......... .......... .......... 216 AGAAGGCTTG ATGAATGAAA GTAGTGAGAT TAGGGGATCG GGTGCCACGT TCCGGTACCA 6375 .......... .......... .......... .......... .......... .......... 216 GGATAGTATA TGAGGATCGG AGTATCACGT TCCGACACCA GGATAATATA TGGATCGGGT 6315 .......... .......... .......... .......... .......... .......... 216 GCCACGTTCC GGTACCAGGA TAGAATATGG ATCGGGTGTC ACGTTCCAAC ACCAGGATAG 6255 .......... .......... .......... .......... .......... .......... 216 AATATGGATC GGGTGCCACG TTCCGGTACC AGGGTAGAAT ATGGATCGGG TGTCACGTTC 6195 .......... .......... .......... .......... .......... .......... 216 CGACACCAGG ATAGAATATG GATCGGGTGC CACGTTCCGG TACCAGGATA ATATATGAGG 6135 .......... .......... .......... .......... .......... .......... 216 ATCGGAGTGT CACGTTCCGA CACCAGGATA GTATATTGAG GAGCGGAGTG TCACGTACCG 6075 .......... .......... .......... .......... .......... .......... 216 ACACGAGGGG AATAAAGATA ATGAATTTTG AAAGATGTTA ATATGTTCAA TCTAATGAAC 6015 .......... .......... .......... .......... .......... .......... 216 CTAATTCCCA AATGAGTATG ATGAGGAGGC GTGAGTCCTC ATTGATGTGC TTGGTGTTGC 5955 .......... .......... .......... .......... .......... .......... 216 AACCAAGGGT TATGGTAACT GTAAATGCTG CATGCTAAGG ATATTAGTTG ATTTTATGAT 5895 .......... .......... .......... .......... .......... .......... 216 ATTGCTTAAC ATATACTGTT TTCTATTTTG AGTTGGCCGA TGATATCTAC TCAGTACCCG 5835 .......... .......... .......... .......... .......... .......... 216 TGTTTTGTAC TGACCCCTAC TTTTATGTTT TCTTCTTTGT TATTTGTGGA GTGCAGCAAA 5775 .......... .......... .......... .......... .......... .......... 216 CGTGCCGTCG TCTTCAACTC AACAGTAATT CAAGCCAGTC TTTACTACAC CGGAAATTCA 5715 .......... .......... .......... .......... .......... .......... 216 GGGTGAGCTA ATGTTTCTAG CTTGGACTGG ATCTTTTTCT TCAAGTCTTG ATGCCTTGAA 5655 |||||| |||||||||| ||||| |||| ||| |||||| |||||||||| .......... ....TTCTAG CTTGGACTGG ATCTTCTTCT TCATGTCTTG ATGCCTTGAA 262 CTTCCGGCAT GGACTAGCT- TTTACTTGTT TTAGCTT-TT AGAATACTCT TAG-TTTAGT 5598 ||||||||| ||||||||| |||| | || ||||||| || || ||||||| ||| |||||| GTTCCGGCAT GGACTAGCTG TTTATGTATT TTAGCTTCTT AG-ATACTCT TAGATTTAGT 321 AATTGATCAT AGATGTTCTT GTGATGATGA CTTCCAGATT TTGGGAAATA ATA 5545 |||| | |||||||||| |||||||| | |||||||||| |||||||||| ||| AATTCGAAGT AGATGTTCTT GTGATGATAA CTTCCAGATT TTGGGAAATA ATA 374 hqPGS_C06HBa0158P14.1-16-_SGN-E352844+ (5700 5545) ******************************************************************************** EST sequence 3 -strand 434 n (File: SGN-E222578-) 1 AAAAAAAAAA AAAAAAACTC GAGACTAGCA AGCCTCATCA CTGAAACTCC ATCTTGAAGC 61 TGGTAACACT CGAAGCTCTG CAAGCAAGTT TCCATCTCGA AGCCTTGAAG AAAGTCCCCA 121 TCTAGAAAGT TGTGGAGTGC AGCAAACGTG CCGTCATCTT CGACTCAACA GTAACTCAAG 181 CCAGTCTTCG TCACACCGGA TCTTCAGGGT GAGCTAACGC GTCTAGCTTG GACTGGATCT 241 TCTCCTTCAT GTCTTGATGC CTTGAACCTC CGGCATGGAC TAGCTTCTTA TGTATTTTTA 301 GCTTTTAGAA ACTCTTAGAA TTAGTAGTTT AAAGTAGATG TTCTTGTGAT GATGACTTCC 361 AGGTTTTGGG AATAATAGAT GTTGAATATT GATAGTTATT GAATTGGTTT TTATTAAAAA 421 AAAAAAAAAA AAAA Predicted gene structure (within gDNA segment 8519 to 3555): Exon 1 6432 6421 ( 12 n); cDNA 100 111 ( 12 n); score: 0.833 Intron 1 6420 5811 ( 610 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.78) Exon 2 5810 5551 ( 260 n); cDNA 112 372 ( 261 n); score: 0.829 PPA cDNA 416 434 MATCH C06HBa0158P14.1-16- SGN-E222578- 0.829 272 0.627 C PGS_C06HBa0158P14.1-16-_SGN-E222578- (6432 6421,5810 5551) Alignment (genomic DNA sequence = upper lines): AAGGCTTGAT GAATGAAAGT AGTGAGATTA GGGGATCGGG TGCCACGTTC CGGTACCAGG 6373 ||| ||||| || AAGCCTTGAA GA........ .......... .......... .......... .......... 111 ATAGTATATG AGGATCGGAG TATCACGTTC CGACACCAGG ATAATATATG GATCGGGTGC 6313 .......... .......... .......... .......... .......... .......... 111 CACGTTCCGG TACCAGGATA GAATATGGAT CGGGTGTCAC GTTCCAACAC CAGGATAGAA 6253 .......... .......... .......... .......... .......... .......... 111 TATGGATCGG GTGCCACGTT CCGGTACCAG GGTAGAATAT GGATCGGGTG TCACGTTCCG 6193 .......... .......... .......... .......... .......... .......... 111 ACACCAGGAT AGAATATGGA TCGGGTGCCA CGTTCCGGTA CCAGGATAAT ATATGAGGAT 6133 .......... .......... .......... .......... .......... .......... 111 CGGAGTGTCA CGTTCCGACA CCAGGATAGT ATATTGAGGA GCGGAGTGTC ACGTACCGAC 6073 .......... .......... .......... .......... .......... .......... 111 ACGAGGGGAA TAAAGATAAT GAATTTTGAA AGATGTTAAT ATGTTCAATC TAATGAACCT 6013 .......... .......... .......... .......... .......... .......... 111 AATTCCCAAA TGAGTATGAT GAGGAGGCGT GAGTCCTCAT TGATGTGCTT GGTGTTGCAA 5953 .......... .......... .......... .......... .......... .......... 111 CCAAGGGTTA TGGTAACTGT AAATGCTGCA TGCTAAGGAT ATTAGTTGAT TTTATGATAT 5893 .......... .......... .......... .......... .......... .......... 111 TGCTTAACAT ATACTGTTTT CTATTTTGAG TTGGCCGATG ATATCTACTC AGTACCCGTG 5833 .......... .......... .......... .......... .......... .......... 111 TTTTGTACTG ACCCCTACTT TTATGTTTTC TTCTTTGTTA TTTGTGGAGT GCAGCAAACG 5773 | || | || | | | ||||||||| |||||||||| .......... .......... ..AAGTCCCC ATC-TAGAAA GTTGTGGAGT GCAGCAAACG 148 TGCCGTCGTC TTCAACTCAA CAGTAATTCA AGCCAGTCTT TACTACACCG GAAATTCAGG 5713 ||||||| || ||| |||||| |||||| ||| |||||||||| |||||| || |||||| TGCCGTCATC TTCGACTCAA CAGTAACTCA AGCCAGTCTT CGTCACACCG GATCTTCAGG 208 GTGAGCTAAT GTTTCTAGCT TGGACTGGAT CTTTTTCTTC AAGTCTTGAT GCCTTGAACT 5653 ||||||||| | ||||||| |||||||||| ||| | |||| | |||||||| ||||||||| GTGAGCTAAC GCGTCTAGCT TGGACTGGAT CTTCTCCTTC ATGTCTTGAT GCCTTGAACC 268 TCCGGCATGG ACTAGCTT-T TA-CTTGTTT TAGCTTTTAG AATACTCTTA G-TTTAGTAA 5596 |||||||||| |||||||| | || | ||| |||||||||| || ||||||| | |||||| TCCGGCATGG ACTAGCTTCT TATGTATTTT TAGCTTTTAG AA-ACTCTTA GAATTAGTAG 327 TTGATCATAG ATGTTCTTGT GATGATGACT TCCAGATTTT GGGAA 5551 || | ||| |||||||||| |||||||||| ||||| |||| ||||| TTTAAAGTAG ATGTTCTTGT GATGATGACT TCCAGGTTTT GGGAA 372 hqPGS_C06HBa0158P14.1-16-_SGN-E222578- (5810 5551) ******************************************************************************** EST sequence 73 +strand 725 n (File: SGN-E546548+) 1 GCAAAATAGG ATTCCTCTAC ACGTTTTAGG GGTCGTTTTG GACTATTCTT TCCTTAATTA 61 TAAAGATTGA GGGTTAATAT TAATAGGTCT AATTACTTGG GGGTTAAAAG AGGTAACCTT 121 AAGTTAATTA GTGGGTTTTA TTGTCCTCCT TTACACTTAA TTATACTTTT AATTAGGGTA 181 AAAAGAAGGA GGGTTTGAAT AAAACAAAAC AAAAGAAAAG AACAGAAAGA GAGGAGAAAC 241 GAACGAGTAG AGAGAGAGAA ACGAAGAGGA TAGCAAGGAT TTTGAGAAGA TAGCTTGTTG 301 ATTCAATTCT TCGGTGGAGG TAGGTTATGG TTTATGTTAC GATATTCGTA GTGAACTCTT 361 AATAGTGAAT ATTATGTGTT GATAGTATTG TAAACCCTGC TATGTGCTTA AGTTGTATGC 421 TTGCATGATT ATGATTATGA AATTGCGATG AATTAACAAA GCATGATGAA GCAATTGAAT 481 CCCAAATCTT GAAAGAACCC TAATTCGCTT GATATATTAT ATAATGAGAA TGATGATGCC 541 TTAGTATGAA AGAAGGCTTG ATAAATTATA TAATGAGAAT GATGATGCCT TAGTGTAAAA 601 GAAGGCTTGA TGGATTAGGG GATCGGGTGC CACGTTCCGG TACCAGGATA GAATGAATAT 661 GAGGATCGGA GTGTCACGTT CCGACACCAG GATAGAATAT GGATCGGGTG CCACGTTCCG 721 GTACC Predicted gene structure (within gDNA segment 9099 to 5194): Exon 1 6964 6360 ( 605 n); cDNA 1 605 ( 605 n); score: 0.704 Intron 1 6359 6300 ( 60 n); Pd: 0.000 (s: 0.38), Pa: 0.000 (s: 0.76) Exon 2 6299 6252 ( 48 n); cDNA 606 654 ( 49 n); score: 0.760 Intron 2 6251 6221 ( 31 n); Pd: 0.000 (s: 0.76), Pa: 0.000 (s: 0.85) Exon 3 6220 6151 ( 70 n); cDNA 655 725 ( 71 n); score: 0.893 MATCH C06HBa0158P14.1-16- SGN-E546548+ 0.724 723 0.997 C PGS_C06HBa0158P14.1-16-_SGN-E546548+ (6964 6360,6299 6252,6220 6151) Alignment (genomic DNA sequence = upper lines): GCTGTGTCGG ATTTCTGTTA ATTTATTTAA GGGGCATTTT GGACTATTTC CTACTTTAAT 6905 || | || ||| || | | | |||| ||| | |||| |||||| ||| | | ||||| GCAAAATAGG ATTCCTCTAC ACGT-TTTAG GGGTCGTTTT GGACTA-TTC TTTCCTTAAT 58 TATAAAG-TG GTGGGTTAAT GTTAATAAGT CTAATTACTT GGGGGTTAAA AGAGGTAACC 6846 ||||||| | | |||||||| |||||| || |||||||||| |||||||||| |||||||||| TATAAAGATT GAGGGTTAAT ATTAATAGGT CTAATTACTT GGGGGTTAAA AGAGGTAACC 118 TTAAGTTAAC TAGTGGG--T TA-T---CT- -TTTATACTT AATTATA-TG TTAATTAGGG 6795 ||||||||| ||||||| | || | || |||| |||| ||||||| | |||||||||| TTAAGTTAAT TAGTGGGTTT TATTGTCCTC CTTTACACTT AATTATACTT TTAATTAGGG 178 T-AAAAGAAA GAGGGTTGGA ATAAGAAAAA TAAGAAAGAA CA-AAGAGAG ACAGAAAAAG 6737 | ||||||| ||||||| || |||| || || | |||||| | || ||| | || | || TAAAAAGAAG GAGGGTTTGA ATAA-AACAA AACAAAAGAA AAGAACAGAA AGAG-AGGAG 236 AAAGAAAACG AGTAGAGAGA GAGAGAAACG AAGGGAATAT CAAGGATTTT GAGAAGATAG 6677 ||| |||| ||| ||||| |||||||||| ||| | ||| |||||||||| |||||||||| AAA-CGAACG AGT--AGAGA GAGAGAAACG AAGAGGATAG CAAGGATTTT GAGAAGATAG 293 CTTGTTGATC GCAATTCTTC GGTGGAGGTA GGTTATGG-T TATTTCATGC TATTCGTAGT 6618 ||||||||| ||||||||| |||||||||| |||||||| | ||| | | | |||||||||| CTTGTTGAT- TCAATTCTTC GGTGGAGGTA GGTTATGGTT TATGTTACGA TATTCGTAGT 352 AAACTCTTAA TAGCGAATGA TATGTGTTAG TAGTATTGTG AA-CCTTCTA TATGCTTAA- 6560 ||||||||| ||| |||| |||||||| ||||||||| || ||| ||| | ||||||| GAACTCTTAA TAGTGAATAT TATGTGTTGA TAGTATTGTA AACCCTGCTA TGTGCTTAAG 412 TTGTATGCTT GCATGAATGA TG-TGATTAT GTAATTATGA A-TAAATAAG CATGATGAAG 6502 |||||||||| ||||| || | || | || | | |||| | ||| ||| |||||||||| TTGTATGCTT GCATG-ATTA TGATTATGAA ATTGCGATGA ATTAACAAAG CATGATGAAG 471 CTATTTAATC CCAAATCTTG AAAAGAAACC ATAATCTACT TTGTTAATGA TGATGCCTTG 6442 | ||| |||| |||||||||| |||| |||| |||| | ||| | || | | || || CAATTGAATC CCAAATCTTG -AAAG-AACC CTAAT-TCGC TTGAT-AT-A TTATATAATG 526 GTATAAAAGA AGGCTTGATG AATGAAAGTA GTGAGATTAG GGGATCGGGT GCCACGTTCC 6382 | | || | ||| | | ||||||| | | || || | | | | AGAATGATGA TGCCTT-A-G TATGAAAGAA GGCTTGATAA ATTATATAAT GAGA-ATGAT 583 GGTACCAGGA TAGTATATG- AGGATCGGAG TATCACGTTC CGACACCAGG ATAATATATG 6323 | | || | ||| | | ||| GATGCC-TTA GTGTAAAAGA AGG....... .......... .......... .......... 605 GATCGGGTGC CACGTTCCGG TACCAGGATA GAATA-TGGA TCGGGTGTCA CGTTCCAACA 6264 | ||| || || ||| ||||||| || |||||| | .......... .......... ...CTTGATG GATTAGGGGA TCGGGTGCCA CGTTCCGGTA 642 CCAGGATAGA ATATGGATCG GGTGCCACGT TCCGGTACCA GGGTAGAATA TGGATCGG-G 6205 |||||||||| || | || ||||||| | CCAGGATAGA AT........ .......... .......... ...GAATATG AGGATCGGAG 671 TGTCACGTTC CGACACCAGG ATAGAATATG GATCGGGTGC CACGTTCCGG TACC 6151 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||| TGTCACGTTC CGACACCAGG ATAGAATATG GATCGGGTGC CACGTTCCGG TACC 725 hqPGS_C06HBa0158P14.1-16-_SGN-E546548+ (6964 6360,6299 6252,6220 6151) ******************************************************************************** EST sequence 54 +strand 729 n (File: SGN-E351546+) 1 TTGGCCGATG ATATCTACTC AGTAGCCGTG TTTTGTACTG ACCCCTACTT TTATGTTTTT 61 CTTCTTGGTA TTTGTGGAGT GCAGCAAACG TGCCGTCATC TTCGACTCAA CAGTAACTCA 121 AGCCAGTCTT CGTCACACCG GATCTTCAGG GTGAGCTAAC GCTTCTAGCT TGGACTGGAT 181 CTTCTCCTTC ATGTCTTGAT GCCTTGAACT TCCGGCATGG ACTAGCTTCT TATGTAATTT 241 TTTAGCTTCT TAGAAACTCT TAGAATTAGT AGTTTAAAGT AGATGTTCTT GTGATGATGA 301 CTTCCAGGTT TTGGGAATAA TAGATGTTTA ATAATAGTAG TTATTGATTT TATTAATGAG 361 TTTAAGTCTT CCGCATTACT TTCTGTTGCT ATTACATTGA AATGTTAAGG TTTAGATTGG 421 TTGGTTCGCT CACATAGGAG GGTAAGTGTG GGTGCCAGTG GCGGCCCGGA TTTGGGTCGT 481 GACAAAACTT GGTATCAGAG CATTAGGTTC GTTGGTCTCA TCACACAAGA ACAAGTCTAG 541 TAGAGTCTTA AGGAACGGTA GGGGGACGCT TTTACTTTTC CTTGAGAGGC TATAAGACTT 601 TAGGAAAACT TCACTCTTTC ATTCTTTCTT TCGTGCTACT ACTTCGAGTC AATTGGTATC 661 TAAGCGATAC GAATTGGTAT CTGACCATNC TCACTCTCTT GCCAGATGGG TAGAACTAGA 721 GCAACGACT Predicted gene structure (within gDNA segment 6462 to 2337): Exon 1 5862 5397 ( 466 n); cDNA 1 484 ( 484 n); score: 0.814 MATCH C06HBa0158P14.1-16- SGN-E351546+ 0.814 466 0.639 C PGS_C06HBa0158P14.1-16-_SGN-E351546+ (5862 5397) Alignment (genomic DNA sequence = upper lines): TTGGCCGATG ATATCTACTC AGTACCCGTG TTTTGTACTG ACCCCTACTT TTATGTTTTC 5803 |||||||||| |||||||||| |||| ||||| |||||||||| |||||||||| ||||||||| TTGGCCGATG ATATCTACTC AGTAGCCGTG TTTTGTACTG ACCCCTACTT TTATGTTTTT 60 TTCTTTGTTA TTTGTGGAGT GCAGCAAACG TGCCGTCGTC TTCAACTCAA CAGTAATTCA 5743 | ||| || |||||||||| |||||||||| ||||||| || ||| |||||| |||||| ||| CTTCTTGGTA TTTGTGGAGT GCAGCAAACG TGCCGTCATC TTCGACTCAA CAGTAACTCA 120 AGCCAGTCTT TACTACACCG GAAATTCAGG GTGAGCTAAT GTTTCTAGCT TGGACTGGAT 5683 |||||||||| |||||| || |||||| ||||||||| | |||||||| |||||||||| AGCCAGTCTT CGTCACACCG GATCTTCAGG GTGAGCTAAC GCTTCTAGCT TGGACTGGAT 180 CTTTTTCTTC AAGTCTTGAT GCCTTGAACT TCCGGCATGG ACTAGCTT-T TA-CT--TGT 5627 ||| | |||| | |||||||| |||||||||| |||||||||| |||||||| | || | | | CTTCTCCTTC ATGTCTTGAT GCCTTGAACT TCCGGCATGG ACTAGCTTCT TATGTAATTT 240 TTTAGCTT-T TAGAATACTC TTAG-TTTAG TAATTGATCA TAGATGTTCT TGTGATGATG 5569 |||||||| | ||||| |||| |||| |||| || || | |||||||||| |||||||||| TTTAGCTTCT TAGAA-ACTC TTAGAATTAG TAGTTTAAAG TAGATGTTCT TGTGATGATG 299 ACTTCCAGAT TTTGGG---- A-A-A----T AAT-A-A-TA GTTATTGATT TTATTAATGA 5522 |||||||| | |||||| | | | | ||| | | || |||||||||| |||||||||| ACTTCCAGGT TTTGGGAATA ATAGATGTTT AATAATAGTA GTTATTGATT TTATTAATGA 359 GTTTAAGTCT TCCGCATTAT TTACTGTTGA TATTATATTG AAATGTTAGA GTTTAGATTG 5462 |||||||||| ||||||||| || |||||| ||||| |||| |||||||| |||||||||| GTTTAAGTCT TCCGCATTAC TTTCTGTTGC TATTACATTG AAATGTTAAG GTTTAGATTG 419 GTTGGTTCGC TCACATAGGA GGGTAAGTGT GGGTGCCAGT CACGGTCCGG ATTTGGGTCG 5402 |||||||||| |||||||||| |||||||||| |||||||||| ||| |||| |||||||||| GTTGGTTCGC TCACATAGGA GGGTAAGTGT GGGTGCCAGT GGCGGCCCGG ATTTGGGTCG 479 TGACA 5397 ||||| TGACA 484 hqPGS_C06HBa0158P14.1-16-_SGN-E351546+ (5862 5397) ******************************************************************************** EST sequence 68 +strand 580 n (File: SGN-E356206+) 1 TTGGCCGATG ATATCTACTC AGTAGCCGTG TTTTGTACTG ACCCCTACTT TTATGTTTTT 61 CTTCTTGTTA TTTGTGGAGT GCAGCAAACG TGCCGTCATC TTCGACTCAA CAGTAACTCA 121 AGCCAGTCTT CGTCACACCG GATCTTCAGG GTGAGCTAAC GCTTCTAGCT TGGACTGGAT 181 CTTCTCCTTC ATGTCTTGAT GCCTTGAACT TCCGGCATGG ACTAGCTTCT TATGTAATTT 241 TTTAGCTTCT TAGAAACTCT TAGAATTAGT AGTTTAAAGT AGATGTTCTT GTGATGATGA 301 CTTCCAGGTT TTGGGAATAA TAGATGTTTA ATAATAGTAG TTATTGATTT TATTAATGAG 361 TTTAAGTCTT CCGCATTACT TTCTGTTGCT ATTACATTGA AATGTTAAGG TTTAGATTGG 421 TTGGTTCGCT CACATAGGAG GGTAAGTGTG GGTGCCAGTG GCGGCCCGGA TTTGGGTCGT 481 GACAAAACTT GGTATCAGAG CATTAGGGTC GTTGGTCTCA TCACACAAGA ACAAGTCTAG 541 TAGAGTCTTA AGGGACGGTA NGGGGACGCT TTTACTTTTC Predicted gene structure (within gDNA segment 6462 to 3827): Exon 1 5862 5397 ( 466 n); cDNA 1 484 ( 484 n); score: 0.817 MATCH C06HBa0158P14.1-16- SGN-E356206+ 0.817 466 0.803 C PGS_C06HBa0158P14.1-16-_SGN-E356206+ (5862 5397) Alignment (genomic DNA sequence = upper lines): TTGGCCGATG ATATCTACTC AGTACCCGTG TTTTGTACTG ACCCCTACTT TTATGTTTTC 5803 |||||||||| |||||||||| |||| ||||| |||||||||| |||||||||| ||||||||| TTGGCCGATG ATATCTACTC AGTAGCCGTG TTTTGTACTG ACCCCTACTT TTATGTTTTT 60 TTCTTTGTTA TTTGTGGAGT GCAGCAAACG TGCCGTCGTC TTCAACTCAA CAGTAATTCA 5743 | |||||| |||||||||| |||||||||| ||||||| || ||| |||||| |||||| ||| CTTCTTGTTA TTTGTGGAGT GCAGCAAACG TGCCGTCATC TTCGACTCAA CAGTAACTCA 120 AGCCAGTCTT TACTACACCG GAAATTCAGG GTGAGCTAAT GTTTCTAGCT TGGACTGGAT 5683 |||||||||| |||||| || |||||| ||||||||| | |||||||| |||||||||| AGCCAGTCTT CGTCACACCG GATCTTCAGG GTGAGCTAAC GCTTCTAGCT TGGACTGGAT 180 CTTTTTCTTC AAGTCTTGAT GCCTTGAACT TCCGGCATGG ACTAGCTT-T TA-CT--TGT 5627 ||| | |||| | |||||||| |||||||||| |||||||||| |||||||| | || | | | CTTCTCCTTC ATGTCTTGAT GCCTTGAACT TCCGGCATGG ACTAGCTTCT TATGTAATTT 240 TTTAGCTT-T TAGAATACTC TTAG-TTTAG TAATTGATCA TAGATGTTCT TGTGATGATG 5569 |||||||| | ||||| |||| |||| |||| || || | |||||||||| |||||||||| TTTAGCTTCT TAGAA-ACTC TTAGAATTAG TAGTTTAAAG TAGATGTTCT TGTGATGATG 299 ACTTCCAGAT TTTGGG---- A-A-A----T AAT-A-A-TA GTTATTGATT TTATTAATGA 5522 |||||||| | |||||| | | | | ||| | | || |||||||||| |||||||||| ACTTCCAGGT TTTGGGAATA ATAGATGTTT AATAATAGTA GTTATTGATT TTATTAATGA 359 GTTTAAGTCT TCCGCATTAT TTACTGTTGA TATTATATTG AAATGTTAGA GTTTAGATTG 5462 |||||||||| ||||||||| || |||||| ||||| |||| |||||||| |||||||||| GTTTAAGTCT TCCGCATTAC TTTCTGTTGC TATTACATTG AAATGTTAAG GTTTAGATTG 419 GTTGGTTCGC TCACATAGGA GGGTAAGTGT GGGTGCCAGT CACGGTCCGG ATTTGGGTCG 5402 |||||||||| |||||||||| |||||||||| |||||||||| ||| |||| |||||||||| GTTGGTTCGC TCACATAGGA GGGTAAGTGT GGGTGCCAGT GGCGGCCCGG ATTTGGGTCG 479 TGACA 5397 ||||| TGACA 484 hqPGS_C06HBa0158P14.1-16-_SGN-E356206+ (5862 5397) ******************************************************************************** EST sequence 70 +strand 655 n (File: SGN-E356696+) 1 TTGGCCGATG ATATCTACTC AGTAGCCGTG TTTTGTACTG ACCCCTACTT TTATGTTTTT 61 CTTCTTGTTA TTTGTGGAGT GCAGCAAACG TGCCGTCATC TTCGACTCAA CAGTAACTCA 121 AGCCAGTCTT CGTCACACCG GATCTTCAGG GTGAGCTAAC GCTTCTAGCT TGGACTGGAT 181 CTTCTCCTTC ATGTCTTGAT GCCTTGAACT TCCGGCATGG ACTAGCTTCT TATGTAATTT 241 TTTAGCTTCT TAGAAACTCT TAGAATTAGT AGTTTAAAGT AGATGTTCTT GTGATGATGA 301 CTTCCAGGTT TTGGGAATAA TAGATGTTTA ATAATAGTAG TTATTGATTT TATTAATGAG 361 TTTAAGTCTT CCGCATTACT TTCTGTTGCT ATTACATTGA AATGTTAAGG TTTAGATTGG 421 TTGGTTCGCT CACATANGAG GGTAAGTGTG GGTGCCAGTG GCGGCCCGGA TTTGGGTCGT 481 GACAAAACTT GGTATCAGAG CATTAGGTTC GTTGGTCTCA TCACACAAGA ACAAGTCTAG 541 TAGAGTCTTA AGGAACGGTA GGGGGACGCT TTTACTTTTC CTTGAGAGGC TATAAGACTT 601 TAGGAAAACT TCACTCTTTC ATTCTTTCTT TCGTGCTACT ACTTGAGTCC AATTG Predicted gene structure (within gDNA segment 6462 to 3077): Exon 1 5862 5397 ( 466 n); cDNA 1 484 ( 484 n); score: 0.814 MATCH C06HBa0158P14.1-16- SGN-E356696+ 0.814 466 0.711 C PGS_C06HBa0158P14.1-16-_SGN-E356696+ (5862 5397) Alignment (genomic DNA sequence = upper lines): TTGGCCGATG ATATCTACTC AGTACCCGTG TTTTGTACTG ACCCCTACTT TTATGTTTTC 5803 |||||||||| |||||||||| |||| ||||| |||||||||| |||||||||| ||||||||| TTGGCCGATG ATATCTACTC AGTAGCCGTG TTTTGTACTG ACCCCTACTT TTATGTTTTT 60 TTCTTTGTTA TTTGTGGAGT GCAGCAAACG TGCCGTCGTC TTCAACTCAA CAGTAATTCA 5743 | |||||| |||||||||| |||||||||| ||||||| || ||| |||||| |||||| ||| CTTCTTGTTA TTTGTGGAGT GCAGCAAACG TGCCGTCATC TTCGACTCAA CAGTAACTCA 120 AGCCAGTCTT TACTACACCG GAAATTCAGG GTGAGCTAAT GTTTCTAGCT TGGACTGGAT 5683 |||||||||| |||||| || |||||| ||||||||| | |||||||| |||||||||| AGCCAGTCTT CGTCACACCG GATCTTCAGG GTGAGCTAAC GCTTCTAGCT TGGACTGGAT 180 CTTTTTCTTC AAGTCTTGAT GCCTTGAACT TCCGGCATGG ACTAGCTT-T TA-CT--TGT 5627 ||| | |||| | |||||||| |||||||||| |||||||||| |||||||| | || | | | CTTCTCCTTC ATGTCTTGAT GCCTTGAACT TCCGGCATGG ACTAGCTTCT TATGTAATTT 240 TTTAGCTT-T TAGAATACTC TTAG-TTTAG TAATTGATCA TAGATGTTCT TGTGATGATG 5569 |||||||| | ||||| |||| |||| |||| || || | |||||||||| |||||||||| TTTAGCTTCT TAGAA-ACTC TTAGAATTAG TAGTTTAAAG TAGATGTTCT TGTGATGATG 299 ACTTCCAGAT TTTGGG---- A-A-A----T AAT-A-A-TA GTTATTGATT TTATTAATGA 5522 |||||||| | |||||| | | | | ||| | | || |||||||||| |||||||||| ACTTCCAGGT TTTGGGAATA ATAGATGTTT AATAATAGTA GTTATTGATT TTATTAATGA 359 GTTTAAGTCT TCCGCATTAT TTACTGTTGA TATTATATTG AAATGTTAGA GTTTAGATTG 5462 |||||||||| ||||||||| || |||||| ||||| |||| |||||||| |||||||||| GTTTAAGTCT TCCGCATTAC TTTCTGTTGC TATTACATTG AAATGTTAAG GTTTAGATTG 419 GTTGGTTCGC TCACATAGGA GGGTAAGTGT GGGTGCCAGT CACGGTCCGG ATTTGGGTCG 5402 |||||||||| ||||||| || |||||||||| |||||||||| ||| |||| |||||||||| GTTGGTTCGC TCACATANGA GGGTAAGTGT GGGTGCCAGT GGCGGCCCGG ATTTGGGTCG 479 TGACA 5397 ||||| TGACA 484 hqPGS_C06HBa0158P14.1-16-_SGN-E356696+ (5862 5397) ******************************************************************************** EST sequence 67 +strand 481 n (File: SGN-E246710+) 1 CACAAACCGA CATATAGATT TAGGGGATCG GAGTGTCACG TACCGACACA AGAGGATTAA 61 TGAATATTGA GGGAGCGGAG TGTCACGTAC CGACACAAGA GAAATAAAGA TAATGAATCT 121 TGAAAGATGT TAATATACTC AATCTAATGA ACATGATTCC CAAATGAGTA TGGTATTGAG 181 GCTTGAGTCC TCATGTGTGA ACTTGACGGT AATTGTTAAT GATATAGTAT TTGTTGTTGC 241 TACATGTTGA GTATCATAGT TGATTTTATG ATATTACTTG GTATATATAT TGATTTCTAT 301 TTTGAGTTGG CCGATGATAT CTACTCAGTA CCCGTGTTTT GTACTGACCC CTACTTTTAT 361 GTTCTCTTCT TGTTTATTTG TGGAGTGCAG CAAACGTGCC ATCGTGTTCA ACTCAACAGT 421 AATTCAAGCC AGTCTTACTA CATCGGAAAT TCAGGGTGAG CTAATGCTTC TAGCTTGGAC 481 T Predicted gene structure (within gDNA segment 7405 to 4942): Exon 1 6094 5687 ( 408 n); cDNA 73 481 ( 409 n); score: 0.850 MATCH C06HBa0158P14.1-16- SGN-E246710+ 0.850 408 0.848 C PGS_C06HBa0158P14.1-16-_SGN-E246710+ (6094 5687) Alignment (genomic DNA sequence = upper lines): GAGCGGAGTG TCACGTACCG ACACGAGGGG AATAAAGATA ATGAATTTTG AAAGATGTTA 6035 |||||||||| |||||||||| |||| || | |||||||||| |||||| ||| |||||||||| GAGCGGAGTG TCACGTACCG ACACAAGAGA AATAAAGATA ATGAATCTTG AAAGATGTTA 132 ATATGTTCAA TCTAATGAAC CTAATTCCCA AATGAGTATG ATGAGGAGGC GTGAGTCCTC 5975 |||| |||| |||||||||| | ||||||| |||||||||| | ||||| ||||||||| ATATACTCAA TCTAATGAAC ATGATTCCCA AATGAGTATG GTATTGAGGC TTGAGTCCTC 192 ATTGATGTGC TTGGTGTTGC AACCAAGGGT TATGGTAACT GTAAATGCTG CATGCTAAGG 5915 || || | ||| | | | | ||| ||| | || |||| |||| | || ATGTGTGAAC TTGACGGTAA TTGTTAATGA TATAGTATTT GTTGTTGCTA CATGTTGAGT 252 ATATTAGTTG ATTTTATGAT ATTGCTT--A ACATATACTG TTTTCTATTT TGAGTTGGCC 5857 || |||||| |||||||||| ||| ||| | ||||| || ||||||||| |||||||||| ATCATAGTTG ATTTTATGAT ATTACTTGGT ATATATATTG ATTTCTATTT TGAGTTGGCC 312 GATGATATCT ACTCAGTACC CGTGTTTTGT ACTGACCCCT ACTTTTATGT TTTCTTCTTT 5797 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| | ||||||| GATGATATCT ACTCAGTACC CGTGTTTTGT ACTGACCCCT ACTTTTATGT TCTCTTCTTG 372 GTTATTTGTG GAGTGCAGCA AACGTGCCGT CGTCTTCAAC TCAACAGTAA TTCAAGCCAG 5737 ||||||||| |||||||||| |||||||| | ||| |||||| |||||||||| |||||||||| TTTATTTGTG GAGTGCAGCA AACGTGCCAT CGTGTTCAAC TCAACAGTAA TTCAAGCCAG 432 TCTTTACTAC ACCGGAAATT CAGGGTGAGC TAATGTTTCT AGCTTGGACT 5687 || ||||||| | |||||||| |||||||||| ||||| |||| |||||||||| TC-TTACTAC ATCGGAAATT CAGGGTGAGC TAATGCTTCT AGCTTGGACT 481 hqPGS_C06HBa0158P14.1-16-_SGN-E246710+ (6094 5687) ******************************************************************************** EST sequence 76 +strand 236 n (File: SGN-E209683+) 1 TAATGAACTA AATTCCCAAA TGAGTATGAT GAGGAGGTGT GAGTCCTCAT TGATGTGCTT 61 GGTGTTGTAA CCAAGGGTTA TGGTAACTAT AAATGCTGCA TGTTAAGGAT ATTAGTTGAT 121 TTTATGATAT TGCTTAATAC ATACTGTTCC CTATTTTGAG TTGGCCGATG ATATCTACTC 181 AGTACCCGTG GTTTGTACTG ACCCCTACTT TTATGTTTAT CTTCTTGTTA TTTGTG Predicted gene structure (within gDNA segment 6712 to 5015): Exon 1 6022 5787 ( 236 n); cDNA 1 236 ( 236 n); score: 0.939 MATCH C06HBa0158P14.1-16- SGN-E209683+ 0.939 236 1.000 C PGS_C06HBa0158P14.1-16-_SGN-E209683+ (6022 5787) Alignment (genomic DNA sequence = upper lines): TAATGAACCT AATTCCCAAA TGAGTATGAT GAGGAGGCGT GAGTCCTCAT TGATGTGCTT 5963 |||||||| |||||||||| |||||||||| ||||||| || |||||||||| |||||||||| TAATGAACTA AATTCCCAAA TGAGTATGAT GAGGAGGTGT GAGTCCTCAT TGATGTGCTT 60 GGTGTTGCAA CCAAGGGTTA TGGTAACTGT AAATGCTGCA TGCTAAGGAT ATTAGTTGAT 5903 ||||||| || |||||||||| |||||||| | |||||||||| || ||||||| |||||||||| GGTGTTGTAA CCAAGGGTTA TGGTAACTAT AAATGCTGCA TGTTAAGGAT ATTAGTTGAT 120 TTTATGATAT TGCTTAACAT ATACTGTTTT CTATTTTGAG TTGGCCGATG ATATCTACTC 5843 |||||||||| ||||||| | |||||||| |||||||||| |||||||||| |||||||||| TTTATGATAT TGCTTAATAC ATACTGTTCC CTATTTTGAG TTGGCCGATG ATATCTACTC 180 AGTACCCGTG TTTTGTACTG ACCCCTACTT TTATGTTT-T CTTCTTTGTT ATTTGTG 5787 |||||||||| ||||||||| |||||||||| |||||||| | |||| ||||| ||||||| AGTACCCGTG GTTTGTACTG ACCCCTACTT TTATGTTTAT CTTC-TTGTT ATTTGTG 236 hqPGS_C06HBa0158P14.1-16-_SGN-E209683+ (6022 5787) ******************************************************************************** EST sequence 38 -strand 337 n (File: SGN-E357033-) 1 GGATAGCGTT CATGAAACTG TCATGTAGAT TTAGGGGATC GGAGTGTCAT GTGTTCACAC 61 AAGAGGATTA ATGAATATGA GGGAGCGGAA TGTCATGTTC CGTCACAAGA GAAATAAAGA 121 TAATGAATCT TGAAAGATGT TAATATACTA AATCTAATGA ACATGATTCC CAAATGAGTA 181 TGGTATTGAG GCTTGAGTCC TCATGTGTGA ACGTGACGGT AATTGTTAAT GATATAGTGC 241 TTGTTGTTGC TACATGTTGA GTATCATAGT TGATTTTATG ATAATNCTTG ATATATATTG 301 ATTTCTATTT TGAGTTGGGC GATGATATCT ATTCAGT Predicted gene structure (within gDNA segment 7794 to 5069): Exon 1 6094 5840 ( 255 n); cDNA 83 337 ( 255 n); score: 0.773 MATCH C06HBa0158P14.1-16- SGN-E357033- 0.773 255 0.757 C PGS_C06HBa0158P14.1-16-_SGN-E357033- (6094 5840) Alignment (genomic DNA sequence = upper lines): GAGCGGAGTG TCACGTACCG ACACGAGGGG AATAAAGATA ATGAATTTTG AAAGATGTTA 6035 ||||||| || ||| || ||| ||| || | |||||||||| |||||| ||| |||||||||| GAGCGGAATG TCATGTTCCG TCACAAGAGA AATAAAGATA ATGAATCTTG AAAGATGTTA 142 ATATGTTCAA TCTAATGAAC CTAATTCCCA AATGAGTATG ATGAGGAGGC GTGAGTCCTC 5975 |||| | || |||||||||| | ||||||| |||||||||| | ||||| ||||||||| ATATACTAAA TCTAATGAAC ATGATTCCCA AATGAGTATG GTATTGAGGC TTGAGTCCTC 202 ATTGATGTGC TTGGTGTTGC AACCAAGGGT TATGGTAACT GTAAATGCTG CATGCTAAGG 5915 || || | || | | | | ||| || | || |||| |||| | || ATGTGTGAAC GTGACGGTAA TTGTTAATGA TATAGTGCTT GTTGTTGCTA CATGTTGAGT 262 ATATTAGTTG ATTTTATGAT ATTGCTTAAC ATATACTGTT TTCTATTTTG AGTTGGCCGA 5855 || |||||| |||||||||| | | ||| | ||||| || | |||||||||| |||||| ||| ATCATAGTTG ATTTTATGAT AATNCTTGAT ATATATTGAT TTCTATTTTG AGTTGGGCGA 322 TGATATCTAC TCAGT 5840 ||||||||| ||||| TGATATCTAT TCAGT 337 hqPGS_C06HBa0158P14.1-16-_SGN-E357033- (6094 5840) ******************************************************************************** EST sequence 72 +strand 239 n (File: SGN-E391780+) 1 TCACAAACCG ACATATAGAT TTAGGGGATC GGAGTGTCAC GTACCGACAC AAGAGGATTA 61 ATGAATATTG AGGGAGCGGA GTGTCACGTA CCGACACAAG AGAAATAAAG ATAATGAATC 121 TTGAAAGATG TTAATATACT CAATCTAATG AACATGATTC CCAAATGAGT ATGGTATTGA 181 GGCTTGAGTC CTCATGTGTG AACTTGACGG TAATTGTTAA TGATATAGTA TTTGTTGAT Predicted gene structure (within gDNA segment 7415 to 4401): Exon 1 6094 5975 ( 120 n); cDNA 74 193 ( 120 n); score: 0.892 MATCH C06HBa0158P14.1-16- SGN-E391780+ 0.892 120 0.502 C PGS_C06HBa0158P14.1-16-_SGN-E391780+ (6094 5975) Alignment (genomic DNA sequence = upper lines): GAGCGGAGTG TCACGTACCG ACACGAGGGG AATAAAGATA ATGAATTTTG AAAGATGTTA 6035 |||||||||| |||||||||| |||| || | |||||||||| |||||| ||| |||||||||| GAGCGGAGTG TCACGTACCG ACACAAGAGA AATAAAGATA ATGAATCTTG AAAGATGTTA 133 ATATGTTCAA TCTAATGAAC CTAATTCCCA AATGAGTATG ATGAGGAGGC GTGAGTCCTC 5975 |||| |||| |||||||||| | ||||||| |||||||||| | ||||| ||||||||| ATATACTCAA TCTAATGAAC ATGATTCCCA AATGAGTATG GTATTGAGGC TTGAGTCCTC 193 hqPGS_C06HBa0158P14.1-16-_SGN-E391780+ (6094 5975) ******************************************************************************** EST sequence 30 -strand 711 n (File: SGN-E396056-) 1 TTTTTTTTTT ATGAATTAGC TCAAAGAAAA AATGAGTAAA TTTTTATTAT TTTATGGCAT 61 AATTTTTTCA TTAATTCATG GGTGAGAAAA TTTTTGTTTC TAATAGTGTT ATAAATCGTA 121 AAATAATAAT AATATTTAAG TAGGAAGAAC ATAAATGTAA CGACCTGTTT AGTCGTTTTG 181 AGTAGCAGAT TTTATTTTTG GAAAAACAGG TTGAGACGAC GGAACCCACG ACGGACCGTC 241 ATGAGCACGA TGGACCGTCG AGGAGTCTCG TTTCAAAACA CTTAGAAATT CTGAAATTGG 301 GTACTAAAAA TCGACTCTCT GAACTTCGTA ACGGAATGGC ACGACGGACC GTCACGGGCG 361 TGACGGACCG TCACAGACTC TTTGGTGGAA ATTGAGTCTC TGAACCTTGC GACGACCTGC 421 AGGACGGACC GTCGCAGGCA CGACGGGCCA TCACAGGTTG CGTAATCCCA GTCTGGGTCG 481 GATTTCTTTA CACGTTTTAA GGGACGTTTT GGACTATTCC TACTTTAATT ATAAAGTTAG 541 TGGGTTTATG TTAATAAGTC TAATTACCTG GGGGTTAAAA GAGGTAACCT TGAGTAAATT 601 AGTGGGTTAT TATTCCATCT TTTATTCTTA ATTATATGCT AATTAGGGTA AAAGAAGGAG 661 GGTTTGAATA AGAAAAAGAA AAGAACAGAA AGAGAGAGAA GGAGAATCGA T Predicted gene structure (within gDNA segment 9099 to 5044): Exon 1 9099 9072 ( 28 n); cDNA 88 114 ( 27 n); score: 0.714 Intron 1 9071 9027 ( 45 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.67) Exon 2 9026 8986 ( 41 n); cDNA 115 155 ( 41 n); score: 0.671 Intron 2 8985 7281 (1705 n); Pd: 0.000 (s: 0.67), Pa: 0.000 (s: 0.94) Exon 3 7280 6735 ( 546 n); cDNA 156 706 ( 551 n); score: 0.842 PPA cDNA 12 1 MATCH C06HBa0158P14.1-16- SGN-E396056- 0.842 615 0.865 C PGS_C06HBa0158P14.1-16-_SGN-E396056- (9099 9072,9026 8986,7280 6735) Alignment (genomic DNA sequence = upper lines): AAATTTATAA TTTATAATAT TTTTTTTATT TAAATTTTTT AATTTAAAAT ATCAAATTAA 9040 |||||| | ||| ||||| | || | | AAATTT-TTG TTTCTAATAG TGTTATAA.. .......... .......... .......... 114 TATAATCTAT TTTAACTTTA AAAAATAATA A-ATTTAACT TTCGAAAAAT ATAATATAAC 8981 | | | | || ||||||| | |||||| | ||| || |||| .......... ...ATCGTAA AATAATAATA ATATTTAA-G TAGGAAGAAC ATAAA..... 155 AACTAAAAAA AACCAATGAA ATAACATTCA TTAAAGTTAT AGCAGTGTAT TTTATTTTAC 8921 .......... .......... .......... .......... .......... .......... 155 CTGCTCCTTA TTGTAAAAGC AATTTATTTT TTTACATTTG TTCATAAAAA AAATAATTTA 8861 .......... .......... .......... .......... .......... .......... 155 TTACTAGTTC TTTTCAACAG TTTATATATC AAATTTAAGA AAAAAGGTAA TGGATCGTTA 8801 .......... .......... .......... .......... .......... .......... 155 TAGAGGCCCC TTTAATTTCA GCCCCCTATT TATTTATTTT TACATATGTA TACATTATAC 8741 .......... .......... .......... .......... .......... .......... 155 TCTTTTGTTT TAATGTATAT AATGATGTTT TAATTTTATG AGTCAAATGA GTTACCTTTT 8681 .......... .......... .......... .......... .......... .......... 155 ACTATAATAT TTTATATTAT TAACTATTGT GACTTCAATA CTTATTATAT AGTTTCAAAC 8621 .......... .......... .......... .......... .......... .......... 155 ATATAAATTT TATTTTTAAA AATTTATATT TAAGCATACA ATCAAAGTTC AAAAGTTCTT 8561 .......... .......... .......... .......... .......... .......... 155 ATCCCCAAAA GTGAAAAATA ACATATAATT CGATATACAG AGAGTATTTA AATTTGGGCA 8501 .......... .......... .......... .......... .......... .......... 155 ACTTTCACAT ATAGCAAATA AAAAATTCAT ATTTGTATGC TATAGCAAAG TTTGCATAAT 8441 .......... .......... .......... .......... .......... .......... 155 TGCGCTCAAT AGCAAACATT GAAACTGTAT AATTCGCTAT ACATATACAT TTGAAGCAAA 8381 .......... .......... .......... .......... .......... .......... 155 TTGTATAAAA CAGAGTGCAT AAAACAAGAA AGAGAAAGAC ACTTGGGCAG AGAACTGTAT 8321 .......... .......... .......... .......... .......... .......... 155 AAAAATGATA TGTATAAAAC GAATTGTATT ATTATAAGTG TATAGAATAA TTATATACAA 8261 .......... .......... .......... .......... .......... .......... 155 TTTGAATTTG TATAAAATGA GAAAGAGAGA AAGACAAAAG AGACTTGACA AGGAATATAC 8201 .......... .......... .......... .......... .......... .......... 155 AATTGAATCG AATTGTATAA AATGAGAAAG AGAGAAATTA GATACAATTT GAAAATTGTA 8141 .......... .......... .......... .......... .......... .......... 155 TAAAATGAGA AAGAGAGAAA GGCAAAAGAA ATTGCGCAGG GGAGTATTTA TTGTATAATT 8081 .......... .......... .......... .......... .......... .......... 155 ATAAGTGTAT AGGACGAAAA TATATGTACT TGCAAGTGTA TATACAATTT TCTCACGCTT 8021 .......... .......... .......... .......... .......... .......... 155 TATACAAACA AAAACACAAT TTATACACTT CACTTCTGTT TGTATAAGTG AGAAAGGCGG 7961 .......... .......... .......... .......... .......... .......... 155 GGGTGGCGAG CAAGATTTGG GAGAGTGGCG AGCGAGATCT GGAAGAGGGG AGAGAGGAGA 7901 .......... .......... .......... .......... .......... .......... 155 ACAAAAATAT ATGTATTTAT ACAATTTTCT CTACTTTATC AATTATAAAC AATTTTTATA 7841 .......... .......... .......... .......... .......... .......... 155 CACTTCTGTT TGTATAAAAA GTGAGGAAGC GAACGAGAGA TTAGAGGAGA GTAGCGAGCG 7781 .......... .......... .......... .......... .......... .......... 155 AGATATTTGG GAGAGAGGCG CCTGACAATT TTTTTGCAAA CGTTAGCTAT GGAGCACAAT 7721 .......... .......... .......... .......... .......... .......... 155 TAAATCAAAC CCTAGCTACT CCATTTATTT TAGGTTATTA GTTTGCTATT ATATAAGATT 7661 .......... .......... .......... .......... .......... .......... 155 TTGTCTATAT AATTTTTTTT CATACTATAG GTAAACTTCT TTGATTGTTA GATTTAAAAT 7601 .......... .......... .......... .......... .......... .......... 155 CTTGAAATAA AATAGGTACC TTCTACATTA TATAAATATG ACCCTAATGC TACAAAATTA 7541 .......... .......... .......... .......... .......... .......... 155 TTTGGCTAAA AAATTATTTG GTCCAATATA TTCCTATTTG TTGAAATGAT TTCCCTACTT 7481 .......... .......... .......... .......... .......... .......... 155 AATAATTGAC ACTAGATCTT GCCTTGTGTT ATAATTGAAG ATATATTTGA TACCACATGC 7421 .......... .......... .......... .......... .......... .......... 155 CTATTTTAAT CAAAGTTGTA TTTAAAATTC TGATTCCACG TTCGTTACAG TTAAACTTTT 7361 .......... .......... .......... .......... .......... .......... 155 TTAGTTTATT TTTAAAAAAA AGATAGTTTA TTAAGGATTT TCTTCCCTTC TTCTACCTTG 7301 .......... .......... .......... .......... .......... .......... 155 TTGTCCGATA ATATATAGCT TGTAACGACC TGTTTAGTCA TTTTGAGCAG CAGATTTTAT 7241 |||||||||| ||||||||| ||||||| || |||||||||| .......... .......... TGTAACGACC TGTTTAGTCG TTTTGAGTAG CAGATTTTAT 195 TTCTGGAAAA ATAGGCTGAG GCAACGGATC CCACGACGGA CCGTCATGGG CACGACGGAC 7181 || ||||||| | ||| |||| | ||||| | |||||||||| |||||||| | ||||| |||| TTTTGGAAAA ACAGGTTGAG ACGACGGAAC CCACGACGGA CCGTCATGAG CACGATGGAC 255 CGTCGCAGGG TCTCGTTTCA AAACACTTAG AAAATCTGAA ATTGGGTACT GAAAATCGAC 7121 ||||| | | |||||||||| |||||||||| ||| |||||| |||||||||| ||||||||| CGTCGAGGAG TCTCGTTTCA AAACACTTAG AAATTCTGAA ATTGGGTACT AAAAATCGAC 315 TCTCTGAACT TCGTGACGGA ATGGCAGGAC GGACCGTCAC AGGCGTGACG GACCGTCACA 7061 |||||||||| |||| ||||| |||||| ||| |||||||||| ||||||||| |||||||||| TCTCTGAACT TCGTAACGGA ATGGCACGAC GGACCGTCAC GGGCGTGACG GACCGTCACA 375 GAGCCTTCAG TGAAAACCCA TTCTCTGAAC CTTACGACGA CTTGCAGGAC GGACCGTCGT 7001 || ||| | || ||| | ||||||||| ||| |||||| | |||||||| ||||||||| GACTCTTTGG TGGAAATTGA GTCTCTGAAC CTTGCGACGA CCTGCAGGAC GGACCGTCGC 435 AGGCACGACG GGCCGTCGCA GGCTACGCAA TCCCAGGCTG TGTCGGATTT CTGTTAATTT 6941 |||||||||| |||| || || || | || || |||||| ||| ||||||||| || ||| AGGCACGACG GGCCATCACA GGTTGCGTAA TCCCAGTCTG GGTCGGATTT CT-TTACACG 494 ATTTAAGGGG CATTTTGGAC TATTTCCTAC TTTAATTATA AAG-TGGTGG GTTAATGTTA 6882 |||||||| | |||||||| || ||||||| |||||||||| ||| | |||| ||| |||||| TTTTAAGGGA CGTTTTGGAC TA-TTCCTAC TTTAATTATA AAGTTAGTGG GTTTATGTTA 553 ATAAGTCTAA TTACTTGGGG GTTAAAAGAG GTAACCTTAA GTTAACTAGT GGG------T 6828 |||||||||| |||| ||||| |||||||||| |||||||| | || || |||| ||| | ATAAGTCTAA TTACCTGGGG GTTAAAAGAG GTAACCTTGA GTAAATTAGT GGGTTATTAT 613 T--ATCTTTT ATACTTAATT ATATGTTAAT TAGGGTAAAA GAAAGAGGGT TGGAATAAGA 6770 | ||||||| || ||||||| ||||| |||| |||||||||| ||| |||||| | |||||||| TCCATCTTTT ATTCTTAATT ATATGCTAAT TAGGGTAAAA GAAGGAGGGT TTGAATAAGA 673 AAAATAAGAA AGAACAAAGA GAGACAGAAA AAGAA 6735 |||| | || |||||| | | |||| |||| |||| AAAA-GA-AA AGAACAGAAA GAGAGAGAAG GAGAA 706 hqPGS_C06HBa0158P14.1-16-_SGN-E396056- (9099 9072,9026 8986,7280 6735) ******************************************************************************** EST sequence 43 +strand 605 n (File: SGN-E347579+) 1 AATAAAGAAA ATAGAAAGAA CAAGAGAGAG AGGAAGAATC GAACGAGAAG GGAGAAACAA 61 AGCTTGGAGA AAAATTTGCT TGCTTGATCA CTAATCTTCG GTGGAGGTAG GTTATGGTTT 121 TCATGCTTTC ATAGTAAACT CTTAATAGAG AATGATATGT ATTGGTAGTA TTGTAAACCC 181 TGCTATATGC TTAATTGTAT GCATGCATGA ACGTGATTAT ATAATTGTGA TTATATTAAG 241 CATGATGAAG TTATTGAATC CCAAATCTTG ATAAAAATCT AATCTCTTAT TAATGATGAT 301 GCCTTGGTAT AGAAGAAGGC TTGATGAATA AAAGTAATGG GATTGATGAT GCCTTGGTAT 361 AGAGAAGGCC TGATGATTTA CAGAATGATA TTAGTGGATC GGAGTGTCAC GTACCGACAC 421 ATGCAGGGGA TCGGGTGTCA CGAACCGACA CGTAGAATTA GGGGATCGGG TGTCACGAAC 481 TGGCACGTAG AATTAGGGGA TCGGGTGTCA CGAACCGGCA CGTAGATTAG GGGATCAGGT 541 GTCACGAACC GACACGTAGA ATTAGGGGAT CGGGTGTCAC GAACCGACAC GTAGAATTAG 601 GGGAT Predicted gene structure (within gDNA segment 8201 to 3049): Exon 1 6672 6392 ( 281 n); cDNA 84 355 ( 272 n); score: 0.836 Intron 1 6391 6292 ( 100 n); Pd: 0.000 (s: 0.78), Pa: 0.000 (s: 0.52) Exon 2 6291 6112 ( 180 n); cDNA 356 521 ( 166 n); score: 0.647 MATCH C06HBa0158P14.1-16- SGN-E347579+ 0.762 461 0.762 C PGS_C06HBa0158P14.1-16-_SGN-E347579+ (6672 6392,6291 6112) Alignment (genomic DNA sequence = upper lines): TTGATCGCAA TTCTTCGGTG GAGGTAGGTT ATGGTTATTT CATGCTATTC GTAGTAAACT 6613 |||||| | | ||||||||| |||||||||| |||| | ||| |||||| ||| ||||||||| TTGATCACTA ATCTTCGGTG GAGGTAGGTT ATGG-T-TTT CATGCT-TTC ATAGTAAACT 140 CTTAATAGCG AATGATATGT GTTAGTAGTA TTGTGAA-CC TTCTATATGC TTAATTGTAT 6554 |||||||| | |||||||||| || |||||| |||| || || | |||||||| |||||||||| CTTAATAGAG AATGATATGT ATTGGTAGTA TTGTAAACCC TGCTATATGC TTAATTGTAT 200 GCTTGCATGA ATGATGTGAT TATGTAATTA TGAATA-AAT AAGCATGATG AAGCTATTTA 6495 || |||||| | | ||||| ||| ||||| ||| || | | |||||||||| ||| |||| | GCATGCATG- A--ACGTGAT TATATAATTG TGATTATATT AAGCATGATG AAGTTATTGA 257 ATCCCAAATC TTGAAAAGAA ACCATAATCT ACTTTGTTAA TGATGATGCC TTGGTATAAA 6435 |||||||||| |||| || || | | |||||| | || |||| |||||||||| |||||||| | ATCCCAAATC TTGATAA-AA ATC-TAATCT -C-TTATTAA TGATGATGCC TTGGTATAGA 313 AGAAGGCTTG ATGAATGAAA GTAGTGAGAT TAGGGGATCG GGTGCCACGT TCCGGTACCA 6375 |||||||||| |||||| ||| ||| || ||| | | ||| | AGAAGGCTTG ATGAATAAAA GTAATGGGAT T-GATGATGC CTT....... .......... 355 GGATAGTATA TGAGGATCGG AGTATCACGT TCCGACACCA GGATAATATA TGGATCGGGT 6315 .......... .......... .......... .......... .......... .......... 355 GCCACGTTCC GGTACCAGGA TAGAATATGG ATCGGGTGTC ACGTTCCAAC ACCAGGATAG 6255 ||| | | || | | | | || | | |||| .......... .......... ...GGTATAG AGAAGGCCTG ATGAT-TTAC AGAATGATAT 391 AATATGGATC GG-GTGCCAC GTTCCGGTAC CAGGGTAGAA TATGGATCGG GTGTCACGTT 6196 | |||||| || ||| ||| || || | | || | | | ||||||| |||||||| TA-GTGGATC GGAGTGTCAC GTACC-G-A- CA-CAT-GCA -GGGGATCGG GTGTCACGAA 444 CCGACACCAG GATAGAATAT GGATCGGGTG CCACGTTCCG GTACCAGGAT AATATATGAG 6136 ||||||| || | | |||||||||| |||| | | | | | | | ||| || | | CCGACACGTA GA-ATTA-GG GGATCGGGTG TCACGAACTG GCA-C-GTAG AAT-TA-GGG 498 GATCGGAGTG TCACGTTCCG ACAC 6112 |||||| ||| ||||| ||| ||| GATCGG-GTG TCACGAACCG GCAC 521 hqPGS_C06HBa0158P14.1-16-_SGN-E347579+ (6672 6392) ******************************************************************************** EST sequence 75 +strand 717 n (File: SGN-E349726+) 1 TAGTCTTCGG TGGAGGTAGG TTATTGTTTC TCTTACGATA TTCGTAGTAA ACTCTTAATA 61 GAGAATGATA TGTATTGATA ATATTGTAAA CCCTGCTATG TGCTTAATTG TATGCTTGCA 121 TGAATGTAAC TATATAATTG TTATTATATA AGCATGATGA AGTTATTGAA TCCCAAATCT 181 TGTAAAAACC TAATCTCTTT TTAATGATGA TGCCTTGGTA AGGGAGAAGG CTTGATGAAC 241 TAAAGTAATG AGATTGATGA TGCCTTGGTA AGGGAGAAGG CTTGATGAAT TGATAGAATG 301 AGATTAGGGG ATCGGGTGTC ACGAACTGAC ACGTAGAATT AGGGGATCGG GTGTCACAAA 361 CCGACACGTA GATTAAGGGA TCAGGTGTCA CGAACCAACA CATAGATTAG GGGATCGGGT 421 GTCACGAACC GACACGTAGA TTTAGGGGAT CGGGTGTCAC GAACCGACAC GTAGATTTAG 481 GGGATCGGGT GTCACGAACC GACACGTAGA TTTAGGGGAT CAGGTGTCAC GAACCGACAC 541 GTAGATTTAG GGGATCGGAG TGTCACGTTC CGACACGTAG ATTTAGGGGA TCAGAGTATC 601 ACGTACCGAC ACAAGAAGAT TAATGAATAT GANGGAGCGG AATGTCACGT ACCGACACAA 661 GAGAAATAAA GACAATGAAT CTTGAAAGAT GTTATATACT CAATCTAATG AACATAA Predicted gene structure (within gDNA segment 7291 to 1782): Exon 1 6661 6394 ( 268 n); cDNA 4 263 ( 260 n); score: 0.817 Intron 1 6393 6334 ( 60 n); Pd: 0.000 (s: 0.76), Pa: 0.000 (s: 0.44) Exon 2 6333 6070 ( 264 n); cDNA 264 506 ( 243 n); score: 0.644 MATCH C06HBa0158P14.1-16- SGN-E349726+ 0.731 532 0.742 C PGS_C06HBa0158P14.1-16-_SGN-E349726+ (6661 6394,6333 6070) Alignment (genomic DNA sequence = upper lines): TCTTCGGTGG AGGTAGGTTA TGGT-TATTT CATGCTATTC GTAGTAAACT CTTAATAGCG 6603 |||||||||| |||||||||| | || | | | | | ||||| |||||||||| |||||||| | TCTTCGGTGG AGGTAGGTTA TTGTTTCTCT TACGATATTC GTAGTAAACT CTTAATAGAG 63 AATGATATGT GTTAGTAGTA TTGTGAA-CC TTCTATATGC TTAATTGTAT GCTTGCATGA 6544 |||||||||| || || || |||| || || | |||| ||| |||||||||| ||||||||| AATGATATGT ATTGATAATA TTGTAAACCC TGCTATGTGC TTAATTGTAT GCTTGCATG- 122 ATGATGTGAT TATGTAATTA TGAATAAATA AGCATGATGA AGCTATTTAA TCCCAAATCT 6484 | |||| | ||| ||||| | | || ||| |||||||||| || |||| || |||||||||| A--ATGTAAC TATATAATTG TTATTATATA AGCATGATGA AGTTATTGAA TCCCAAATCT 180 TGAAAAGAAA CCATAATCTA CTTTGTTAAT GATGATGCCT TGGTATAAAA GAAGGCTTGA 6424 || || ||| || |||||| |||| ||||| |||||||||| ||||| | |||||||||| TG-TAA-AAA CC-TAATCT- CTTT-TTAAT GATGATGCCT TGGTAAGGGA GAAGGCTTGA 235 TGAATGAAAG TAGTGAGATT AGGGGATCGG GTGCCACGTT CCGGTACCAG GATAGTATAT 6364 |||| |||| || ||||||| | ||| | TGAACTAAAG TAATGAGATT -GATGAT-GC .......... .......... .......... 263 GAGGATCGGA GTATCACGTT CCGACACCAG GATAATATAT GGATCGGGTG CCACGTTCCG 6304 | || | ||| || | | | .......... .......... .......... CTTGGTA-AG GGAGAAGGCT TGATGAATTG 292 GTACCAGGAT AGAATATGGA TCGGGTGTCA CGTTCCAACA CCAGGATAGA ATATGGATCG 6244 || | || | | ||| |||||||||| || | ||| | || | | |||||| ATAGAATGAG ATTA-GGGGA TCGGGTGTCA CGAACTGACA CGTAGA-ATT A-GGGGATCG 349 GGTGCCACGT TCCGGTACCA GGGTAGAAT- ATGGATCGGG TGTCACGTTC CGACACCAGG 6185 |||| ||| || | | || ||||| | | ||||| || ||||||| | | | | || GGTGTCACAA ACC-G-A-CA -CGTAGATTA AGGGATCAGG TGTCACGAAC C-A-A-CA-C 401 ATAGAATA-T GGATCGGGTG CCACGTTCCG GTACCAGGAT AATATATGAG GATCGGAGTG 6126 ||||| || |||||||||| |||| || | | || | || || | | |||||| ||| ATAGATTAGG GGATCGGGTG TCACGAACC- G-A-CACGTA GATTTA-GGG GATCGG-GTG 456 TCACGTTCCG ACACCAGGAT AGTATATTGA GGAGCGGAGT GTCACGTACC GACACG 6070 ||||| ||| ||| | | | || || | | ||| ||| || |||||| ||| |||||| TCACGAACCG ACA-C--G-T AG-ATTTAGG GGATCGG-GT GTCACGAACC GACACG 506 hqPGS_C06HBa0158P14.1-16-_SGN-E349726+ (6661 6394) ******************************************************************************** EST sequence 45 +strand 731 n (File: SGN-E578076+) 1 TTTCTCGGCC AAACGCGTCA TTTTTCTGTA GTTTTTCATA CTTCAATTTC CTTTTCATTT 61 CTTGGTTGAC CGACGAAACC CACCAACTCA CCACCTCATT CCGCCGTGGT CAGCTCGCTT 121 ACTAGGGTAT ACTCTACGTC TTCTTTAACT CATATAAGAC TCTATCTTTT GTATCTATAA 181 CTGAAGAACA AATTTGCAGT TCAACTGTTC GACGCTTTGC CCCAATTAAT CACAACGTAA 241 ATTTCTTCTG CTCTTAACCC TTGTTCAATT TCAGTGAATT ATCTATATCT CTGGTAAATT 301 GGAAGTCGGG AAACCGAAAA AAGTTGAAAT TTTTAGGGTT GTTTTGTTCT CTGTTTTGCT 361 CGTTAGGACG TTTGAATAAG AAAAATAGAA AGAACAAAGA GAAAACAGAA AAAGAAAGAG 421 AAACGAAGAG GATAGCAAGG ATTTTGAGAA GATAACTTGT TGATCGCAAT TCTTCGGTGG 481 AGGTAGGTTA TGGTTTCTCT TACGATATTC GTAGTAAACT CTTAATAGAG AATGATATGT 541 ATTGATAATA TTGTAAACCC TGCTATGTGC TTAATTGTAT GCTTGCATGA ATGTAACTAT 601 ATAATTGTGA TTATATAAGC ATGATGAAGT TATTGAATCC CAAATCTTGC AAAATCTTAA 661 TCTCTTTGTT CATAATGAGG CCTTGGTATA AAAGAAGGCG TGATGAACTA AAATAATGGG 721 ATTGATGATG C Predicted gene structure (within gDNA segment 9099 to 3965): Exon 1 6757 6397 ( 361 n); cDNA 378 729 ( 352 n); score: 0.823 MATCH C06HBa0158P14.1-16- SGN-E578076+ 0.823 361 0.494 C PGS_C06HBa0158P14.1-16-_SGN-E578076+ (6757 6397) Alignment (genomic DNA sequence = upper lines): AACAAAGAGA GACAGAAAAA GAAAGAAAAC GAGTAGAGAG AGAGAGAAAC GAAGGGAATA 6698 || ||| | | || |||| || | ||||||| || | | || | |||||||| |||| | ||| AAGAAAAATA GAAAGAACAA -AGAGAAAAC -AG-AAAAAG AAAGAGAAAC GAAGAGGATA 434 TCAAGGATTT TGAGAAGATA GCTTGTTGAT CGCAATTCTT CGGTGGAGGT AGGTTATGG- 6639 ||||||||| |||||||||| ||||||||| |||||||||| |||||||||| ||||||||| GCAAGGATTT TGAGAAGATA ACTTGTTGAT CGCAATTCTT CGGTGGAGGT AGGTTATGGT 494 TTATTTCATG CTATTCGTAG TAAACTCTTA ATAGCGAATG ATATGTGTTA GTAGTATTGT 6579 || | | | | ||||||||| |||||||||| |||| ||||| |||||| || || |||||| TTCTCTTACG ATATTCGTAG TAAACTCTTA ATAGAGAATG ATATGTATTG ATAATATTGT 554 GAA-CCTTCT ATATGCTTAA TTGTATGCTT GCATGAATGA TGTGATTATG TAATTATGAA 6520 || ||| || || ||||||| |||||||||| ||||| | | ||| | ||| ||||| ||| AAACCCTGCT ATGTGCTTAA TTGTATGCTT GCATG-A--A TGTAACTATA TAATTGTGAT 611 TAAATAAGCA TGATGAAGCT ATTTAATCCC AAATCTTGAA AAGAAACCAT AATCTACTTT 6460 || ||||||| |||||||| | ||| |||||| |||||||| | ||| | | ||||| |||| TATATAAGCA TGATGAAGTT ATTGAATCCC AAATCTTG-- CA-AAATCTT AATCT-CTTT 667 GTTAATGATG ATGCCTTGGT ATAAAAGAAG GCTTGATGAA TGAAAGTAGT GAGATTAGGG 6400 ||| || ||| | |||||||| |||||||||| || ||||||| ||| || | | |||| | GTTCATAATG AGGCCTTGGT ATAAAAGAAG GCGTGATGAA CTAAAATAAT GGGATT-GAT 726 GAT 6397 ||| GAT 729 hqPGS_C06HBa0158P14.1-16-_SGN-E578076+ (6757 6397) ******************************************************************************** EST sequence 71 +strand 402 n (File: SGN-E357559+) 1 TAGTCTTCGG TGGAGGTAGG TTATTGTTTC TCTTACGATA TTCGTAGTAA ACTCTTAATA 61 GAGAATGATA TGTATTGATA ATATTGTAAA CCCTGCTATG TGCTTAATTG TATGCTTGCA 121 TGAATGTAAC TATATAATTG TTATTATATA AGCATGATGA AGTTATTGAA TCCCAAATCT 181 TGTAAAAACC TAATCTCTTT TTAATGATGA TGCCTTGGTA AGGGAGAAGG CTTGATGAAC 241 TAAAGTAATG AGATTGATGA TGCCTTGGTA AGGGAGAAGG CTTGATGAAT TGATAGAATG 301 AGATTAGGGG ATCGGGTGTC ACGAACTGAC ACGTAGAATT AGGGGATCGG GTGTCACAAA 361 CCGACACGTA GATTAAGGGA TCAGGTGTCA CGAACCAACA CA Predicted gene structure (within gDNA segment 7291 to 4932): Exon 1 6661 6404 ( 258 n); cDNA 4 255 ( 252 n); score: 0.829 MATCH C06HBa0158P14.1-16- SGN-E357559+ 0.829 258 0.642 C PGS_C06HBa0158P14.1-16-_SGN-E357559+ (6661 6404) Alignment (genomic DNA sequence = upper lines): TCTTCGGTGG AGGTAGGTTA TGGT-TATTT CATGCTATTC GTAGTAAACT CTTAATAGCG 6603 |||||||||| |||||||||| | || | | | | | ||||| |||||||||| |||||||| | TCTTCGGTGG AGGTAGGTTA TTGTTTCTCT TACGATATTC GTAGTAAACT CTTAATAGAG 63 AATGATATGT GTTAGTAGTA TTGTGAA-CC TTCTATATGC TTAATTGTAT GCTTGCATGA 6544 |||||||||| || || || |||| || || | |||| ||| |||||||||| ||||||||| AATGATATGT ATTGATAATA TTGTAAACCC TGCTATGTGC TTAATTGTAT GCTTGCATG- 122 ATGATGTGAT TATGTAATTA TGAATAAATA AGCATGATGA AGCTATTTAA TCCCAAATCT 6484 | |||| | ||| ||||| | | || ||| |||||||||| || |||| || |||||||||| A--ATGTAAC TATATAATTG TTATTATATA AGCATGATGA AGTTATTGAA TCCCAAATCT 180 TGAAAAGAAA CCATAATCTA CTTTGTTAAT GATGATGCCT TGGTATAAAA GAAGGCTTGA 6424 || || ||| || |||||| |||| ||||| |||||||||| ||||| | |||||||||| TG-TAA-AAA CC-TAATCT- CTTT-TTAAT GATGATGCCT TGGTAAGGGA GAAGGCTTGA 235 TGAATGAAAG TAGTGAGATT 6404 |||| |||| || ||||||| TGAACTAAAG TAATGAGATT 255 hqPGS_C06HBa0158P14.1-16-_SGN-E357559+ (6661 6404) ******************************************************************************** EST sequence 74 +strand 660 n (File: SGN-E349296+) 1 GAAAAACTGG CAGAAATGAC GGACCCCACG ACGGACCATC ATGGGCACGA CGGACCGTCG 61 CAGGGTCTCA TTTCAAAACA CTTAGGAAAT CTGAAATTGG GTACTGAAAA TCGACTCTCT 121 GAACTTCGTA ACGGAATGGC AAGACGGACC GTCACAGGCG TGATGGACCA TCACAGAGTC 181 TTCAGTGAAA ATCCAGTCTC TGAACCTTGC GACGACCTGC AGGACGGACC GTCGCAGGCA 241 CAACGGGCTG TCACAGGCTG CGTAAATCCC AGTCTGAGTC GGAATTCCTC AATTGTTTTA 301 AGGGACGTTT TTGACTATTC CTGCTTTAAT TATAAAGTTA GTGGGTTAAT GTTAATAAGT 361 CTAATTACTT GGGGGTTAAA AGAGGTAACC TTAAGTTAAT TAGTGGGTTA TTATTGCCAT 421 ATTTTATTCT TAATTATATA CTAATTAGGG TAAAAGAAAG AGGGTTTGAA TAAAGAAAAT 481 AGAAAGAACA AGAGAAAGAG AGAGAAAGTC GAACGAGAAA GAGGATCGAA CGAGAGGAAA 541 AAACACAAAG CTTGGGAAAT CACTTGCTTG ATCACGAATC TTCGGTGGAG GTAGGTTATG 601 GTTTCTCTTA CGATATTCGT AGTAAGCTCT TAATAGCGAA TAATATGTAT TGATAATATT Predicted gene structure (within gDNA segment 8177 to 3617): Exon 1 7235 6581 ( 655 n); cDNA 1 660 ( 660 n); score: 0.810 MATCH C06HBa0158P14.1-16- SGN-E349296+ 0.810 655 0.992 C PGS_C06HBa0158P14.1-16-_SGN-E349296+ (7235 6581) Alignment (genomic DNA sequence = upper lines): GAAAAATAGG CTGAGGCAAC GGATCCCACG ACGGACCGTC ATGGGCACGA CGGACCGTCG 7176 |||||| || | || || ||| |||||| ||||||| || |||||||||| |||||||||| GAAAAACTGG CAGAAATGAC GGACCCCACG ACGGACCATC ATGGGCACGA CGGACCGTCG 60 CAGGGTCTCG TTTCAAAACA CTTAGAAAAT CTGAAATTGG GTACTGAAAA TCGACTCTCT 7116 ||||||||| |||||||||| ||||| |||| |||||||||| |||||||||| |||||||||| CAGGGTCTCA TTTCAAAACA CTTAGGAAAT CTGAAATTGG GTACTGAAAA TCGACTCTCT 120 GAACTTCGTG ACGGAATGGC AGGACGGACC GTCACAGGCG TGACGGACCG TCACAGAGCC 7056 ||||||||| |||||||||| | |||||||| |||||||||| ||| ||||| |||||||| | GAACTTCGTA ACGGAATGGC AAGACGGACC GTCACAGGCG TGATGGACCA TCACAGAGTC 180 TTCAGTGAAA ACCCATTCTC TGAACCTTAC GACGACTTGC AGGACGGACC GTCGTAGGCA 6996 |||||||||| | ||| |||| |||||||| | |||||| ||| |||||||||| |||| ||||| TTCAGTGAAA ATCCAGTCTC TGAACCTTGC GACGACCTGC AGGACGGACC GTCGCAGGCA 240 CGACGGGCCG TCGCAGGCTA CG-CAATCCC AGGCTGTGTC GGATTTCTGT TAATTTATTT 6937 | |||||| | || |||||| || |||||| || ||| ||| ||| ||| | |||| ||| CAACGGGCTG TCACAGGCTG CGTAAATCCC AGTCTGAGTC GGAATTC-CT CAATTGTTTT 299 AAGGGGCATT TTGGACTATT TCCTACTTTA ATTATAAAG- TGGTGGGTTA ATGTTAATAA 6878 ||||| | || || ||||| | |||| ||||| ||||||||| | |||||||| |||||||||| AAGGGACGTT TTTGACTA-T TCCTGCTTTA ATTATAAAGT TAGTGGGTTA ATGTTAATAA 358 GTCTAATTAC TTGGGGGTTA AAAGAGGTAA CCTTAAGTTA ACTAGTGGG- --TTAT---C 6824 |||||||||| |||||||||| |||||||||| |||||||||| | ||||||| |||| | GTCTAATTAC TTGGGGGTTA AAAGAGGTAA CCTTAAGTTA ATTAGTGGGT TATTATTGCC 418 ---TTTTATA CTTAATTATA TGTTAATTAG GGTAAAAGAA AGAGGGTTGG AATAAGAAAA 6767 |||||| |||||||||| | ||||||| |||||||||| |||||||| | ||||| ||| ATATTTTATT CTTAATTATA TACTAATTAG GGTAAAAGAA AGAGGGTTTG AATAAAGAAA 478 ATAAGAAAGA ACAAAGAGAG ACAGAAAAAG AAAG-AAAAC GAGTAGAGAG AGAGAGAAAC 6708 || ||||||| || |||||| | ||| | || |||| ||| ||| | |||| || | ||| AT-AGAAAGA AC-AAGAGA- A-AGAGAGAG AAAGTCGAAC GAG-AAAGAG -GATCG-AAC 531 GA-AGGGAAT ATCAAGGATT TTGAGAAGAT AGCTTG-TTG ATCGCAATTC TTCGGTGGAG 6650 || ||| || | || | ||| ||| || |||| ||| ||| | | || |||||||||| GAGAGGAAAA AACACAAAGC TTGGGAA-AT CACTTGCTTG ATCACGAATC TTCGGTGGAG 590 GTAGGTTATG G-TTATTTCA TGCTATTCGT AGTAAACTCT TAATAGCGAA TGATATGTGT 6591 |||||||||| | || | | | | ||||||| ||||| |||| |||||||||| | |||||| | GTAGGTTATG GTTTCTCTTA CGATATTCGT AGTAAGCTCT TAATAGCGAA TAATATGTAT 650 TAGTAGTATT 6581 | || |||| TGATAATATT 660 hqPGS_C06HBa0158P14.1-16-_SGN-E349296+ (7235 6581) ******************************************************************************** EST sequence 6 -strand 726 n (File: SGN-E550322-) 1 GTTTTTTTTT TTTTTTTATG AATTAGCTCA ATGAAAAATG AGTAAATTTT TTATATTTTA 61 TGGCATAATT TTTTCATTAA TTCATGGTTG AGAAAATCTT TGTTTCTAAT AGTGTTATAA 121 ATCGTAAAAT AATAATAATA TTTAAGTAGG AAGAACATAA ATGTAACGAC CTGTTTAGTC 181 GTTTTGAGTA GCAGATTTTA TTTTTGGAAA AACAGGTTGA GACGACGGAA CCCACGACGG 241 ACCGTCATGA GCACGATGGA CCGTCGAGGA GTCTCGTTTC AAAACACTTA GAAATTCTGA 301 AATTGGGTAC TAAAAATCGA CTCTCTGAAC TTCGTAACGG AATGGCACGA CGGACCGTCA 361 CGGGCGTGAC GGACCGTCAC AGACTCTTTG GTGGAAATTG AGTCTCTGAA CCTTGCGACG 421 ACCTGCAGGA CGGACCGTCG CAGGCACGAC GGGCCATCAC AGGTTGCGTA ATCCCAGTCT 481 GGGTCGGATT TCTTTACACG TTTTAAGGGA CGTTTTGGAC TATTCCTACT TTAATTATAA 541 AGTTAGTGGG TTTATGTTAA TAAGTCTAAT TACCTGGGGG TTAAAAGAGG TAACCTTGAG 601 TAAATTAGTG GGTTATTATT CCATCTTTTA TTCTTAATTA TATGCTAATT AGGGTAAAAG 661 AAGGAGGGTT TGAATAAGAA AAAGAAAAGA ACAGAAAGAG AGAGAAGGAG AATCGATCTG 721 GTGCGA Predicted gene structure (within gDNA segment 9099 to 4354): Exon 1 9098 9036 ( 63 n); cDNA 79 142 ( 64 n); score: 0.595 Intron 1 9035 8385 ( 651 n); Pd: 0.000 (s: 0.58), Pa: 0.221 (s: 0) Exon 2 8384 8367 ( 18 n); cDNA 143 159 ( 17 n); score: 0.611 Intron 2 8366 7283 (1084 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.90) Exon 3 7282 6721 ( 562 n); cDNA 160 726 ( 567 n); score: 0.825 PPA cDNA 19 2 MATCH C06HBa0158P14.1-16- SGN-E550322- 0.802 643 0.886 C PGS_C06HBa0158P14.1-16-_SGN-E550322- (9098 9036,8384 8367,7282 6721) Alignment (genomic DNA sequence = upper lines): AATTTATAAT TTATAATAT- TTTTTTTATT TAAATTTTTT AATTTAAAAT ATCAAATTAA 9040 |||| || | | | || || ||| ||| | | | || | || | || || | | ||| AATTCATGGT TGAGAAAATC TTTGTTTCTA ATAGTGTTAT AAATCGTAAA ATAATAATAA 138 TATAATCTAT TTTAACTTTA AAAAATAATA AATTTAACTT TCGAAAAATA TAATATAACA 8980 ||| TATT...... .......... .......... .......... .......... .......... 142 ACTAAAAAAA ACCAATGAAA TAACATTCAT TAAAGTTATA GCAGTGTATT TTATTTTACC 8920 .......... .......... .......... .......... .......... .......... 142 TGCTCCTTAT TGTAAAAGCA ATTTATTTTT TTACATTTGT TCATAAAAAA AATAATTTAT 8860 .......... .......... .......... .......... .......... .......... 142 TACTAGTTCT TTTCAACAGT TTATATATCA AATTTAAGAA AAAAGGTAAT GGATCGTTAT 8800 .......... .......... .......... .......... .......... .......... 142 AGAGGCCCCT TTAATTTCAG CCCCCTATTT ATTTATTTTT ACATATGTAT ACATTATACT 8740 .......... .......... .......... .......... .......... .......... 142 CTTTTGTTTT AATGTATATA ATGATGTTTT AATTTTATGA GTCAAATGAG TTACCTTTTA 8680 .......... .......... .......... .......... .......... .......... 142 CTATAATATT TTATATTATT AACTATTGTG ACTTCAATAC TTATTATATA GTTTCAAACA 8620 .......... .......... .......... .......... .......... .......... 142 TATAAATTTT ATTTTTAAAA ATTTATATTT AAGCATACAA TCAAAGTTCA AAAGTTCTTA 8560 .......... .......... .......... .......... .......... .......... 142 TCCCCAAAAG TGAAAAATAA CATATAATTC GATATACAGA GAGTATTTAA ATTTGGGCAA 8500 .......... .......... .......... .......... .......... .......... 142 CTTTCACATA TAGCAAATAA AAAATTCATA TTTGTATGCT ATAGCAAAGT TTGCATAATT 8440 .......... .......... .......... .......... .......... .......... 142 GCGCTCAATA GCAAACATTG AAACTGTATA ATTCGCTATA CATATACATT TGAAGCAAAT 8380 || | .......... .......... .......... .......... .......... .....TAAGT 147 TGTATAAAAC AGAGTGCATA AAACAAGAAA GAGAAAGACA CTTGGGCAGA GAACTGTATA 8320 | | | ||| | | AGGA-AGAAC ATA....... .......... .......... .......... .......... 159 AAAATGATAT GTATAAAACG AATTGTATTA TTATAAGTGT ATAGAATAAT TATATACAAT 8260 .......... .......... .......... .......... .......... .......... 159 TTGAATTTGT ATAAAATGAG AAAGAGAGAA AGACAAAAGA GACTTGACAA GGAATATACA 8200 .......... .......... .......... .......... .......... .......... 159 ATTGAATCGA ATTGTATAAA ATGAGAAAGA GAGAAATTAG ATACAATTTG AAAATTGTAT 8140 .......... .......... .......... .......... .......... .......... 159 AAAATGAGAA AGAGAGAAAG GCAAAAGAAA TTGCGCAGGG GAGTATTTAT TGTATAATTA 8080 .......... .......... .......... .......... .......... .......... 159 TAAGTGTATA GGACGAAAAT ATATGTACTT GCAAGTGTAT ATACAATTTT CTCACGCTTT 8020 .......... .......... .......... .......... .......... .......... 159 ATACAAACAA AAACACAATT TATACACTTC ACTTCTGTTT GTATAAGTGA GAAAGGCGGG 7960 .......... .......... .......... .......... .......... .......... 159 GGTGGCGAGC AAGATTTGGG AGAGTGGCGA GCGAGATCTG GAAGAGGGGA GAGAGGAGAA 7900 .......... .......... .......... .......... .......... .......... 159 CAAAAATATA TGTATTTATA CAATTTTCTC TACTTTATCA ATTATAAACA ATTTTTATAC 7840 .......... .......... .......... .......... .......... .......... 159 ACTTCTGTTT GTATAAAAAG TGAGGAAGCG AACGAGAGAT TAGAGGAGAG TAGCGAGCGA 7780 .......... .......... .......... .......... .......... .......... 159 GATATTTGGG AGAGAGGCGC CTGACAATTT TTTTGCAAAC GTTAGCTATG GAGCACAATT 7720 .......... .......... .......... .......... .......... .......... 159 AAATCAAACC CTAGCTACTC CATTTATTTT AGGTTATTAG TTTGCTATTA TATAAGATTT 7660 .......... .......... .......... .......... .......... .......... 159 TGTCTATATA ATTTTTTTTC ATACTATAGG TAAACTTCTT TGATTGTTAG ATTTAAAATC 7600 .......... .......... .......... .......... .......... .......... 159 TTGAAATAAA ATAGGTACCT TCTACATTAT ATAAATATGA CCCTAATGCT ACAAAATTAT 7540 .......... .......... .......... .......... .......... .......... 159 TTGGCTAAAA AATTATTTGG TCCAATATAT TCCTATTTGT TGAAATGATT TCCCTACTTA 7480 .......... .......... .......... .......... .......... .......... 159 ATAATTGACA CTAGATCTTG CCTTGTGTTA TAATTGAAGA TATATTTGAT ACCACATGCC 7420 .......... .......... .......... .......... .......... .......... 159 TATTTTAATC AAAGTTGTAT TTAAAATTCT GATTCCACGT TCGTTACAGT TAAACTTTTT 7360 .......... .......... .......... .......... .......... .......... 159 TAGTTTATTT TTAAAAAAAA GATAGTTTAT TAAGGATTTT CTTCCCTTCT TCTACCTTGT 7300 .......... .......... .......... .......... .......... .......... 159 TGTCCGATAA TATATAGCTT GTAACGACCT GTTTAGTCAT TTTGAGCAGC AGATTTTATT 7240 | |||||||||| |||||||| | |||||| ||| |||||||||| .......... .......AAT GTAACGACCT GTTTAGTCGT TTTGAGTAGC AGATTTTATT 202 TCTGGAAAAA TAGGCTGAGG CAACGGATCC CACGACGGAC CGTCATGGGC ACGACGGACC 7180 | |||||||| ||| |||| | ||||| || |||||||||| ||||||| || |||| ||||| TTTGGAAAAA CAGGTTGAGA CGACGGAACC CACGACGGAC CGTCATGAGC ACGATGGACC 262 GTCGCAGGGT CTCGTTTCAA AACACTTAGA AAATCTGAAA TTGGGTACTG AAAATCGACT 7120 |||| | || |||||||||| |||||||||| || ||||||| ||||||||| |||||||||| GTCGAGGAGT CTCGTTTCAA AACACTTAGA AATTCTGAAA TTGGGTACTA AAAATCGACT 322 CTCTGAACTT CGTGACGGAA TGGCAGGACG GACCGTCACA GGCGTGACGG ACCGTCACAG 7060 |||||||||| ||| |||||| ||||| |||| ||||||||| |||||||||| |||||||||| CTCTGAACTT CGTAACGGAA TGGCACGACG GACCGTCACG GGCGTGACGG ACCGTCACAG 382 AGCCTTCAGT GAAAACCCAT TCTCTGAACC TTACGACGAC TTGCAGGACG GACCGTCGTA 7000 | ||| || | ||| | |||||||||| || ||||||| ||||||||| |||||||| | ACTCTTTGGT GGAAATTGAG TCTCTGAACC TTGCGACGAC CTGCAGGACG GACCGTCGCA 442 GGCACGACGG GCCGTCGCAG GCTACGCAAT CCCAGGCTGT GTCGGATTTC TGTTAATTTA 6940 |||||||||| ||| || ||| | | || ||| ||||| ||| |||||||||| | ||| GGCACGACGG GCCATCACAG GTTGCGTAAT CCCAGTCTGG GTCGGATTTC T-TTACACGT 501 TTTAAGGGGC ATTTTGGACT ATTTCCTACT TTAATTATAA AG-TGGTGGG TTAATGTTAA 6881 |||||||| | ||||||||| | |||||||| |||||||||| || | ||||| || ||||||| TTTAAGGGAC GTTTTGGACT A-TTCCTACT TTAATTATAA AGTTAGTGGG TTTATGTTAA 560 TAAGTCTAAT TACTTGGGGG TTAAAAGAGG TAACCTTAAG TTAACTAGTG GG------TT 6827 |||||||||| ||| |||||| |||||||||| ||||||| || | || ||||| || || TAAGTCTAAT TACCTGGGGG TTAAAAGAGG TAACCTTGAG TAAATTAGTG GGTTATTATT 620 --ATCTTTTA TACTTAATTA TATGTTAATT AGGGTAAAAG AAAGAGGGTT GGAATAAGAA 6769 |||||||| | |||||||| |||| ||||| |||||||||| || ||||||| ||||||||| CCATCTTTTA TTCTTAATTA TATGCTAATT AGGGTAAAAG AAGGAGGGTT TGAATAAGAA 680 AAATAAGAAA GAACAAAGAG AGACAGAAAA AGAAAGAAAA CGAGTAGA 6721 ||| | ||| ||||| | || ||| |||| |||| | | || AAA-GA-AAA GAACAGAAAG AGAGAGAAGG AGAATCGATC TGGTGCGA 726 hqPGS_C06HBa0158P14.1-16-_SGN-E550322- (7282 6721) ******************************************************************************** EST sequence 4 -strand 729 n (File: SGN-E550212-) 1 GCCCCCCCCC GAGTTTTTTT TTTTTTTTTA TGAATTAGCT CAATGAAAAA TGAGTAAATT 61 TTTTATATTT TATGGCATAA TTTTTTCATT AATTCATGGT TGAGAAAATC TTTGTTTCTA 121 ATAGTGTTAT AAATCGTAAA ATAATAATAA TATTTAAGTA GGAAGAACAT AAATGTAACG 181 ACCTGTTTAG TCGTTTTGAG TAGCAGATTT TATTTTTGGA AAAACAGGTT GAGACGACGG 241 AACCCACGAC GGACCGTCAT GAGCACGATG GACCGTCGAG GAGTCTCGTT TCAAAACACT 301 TAGAAATTCT GAAATTGGGT ACTAAAAATC GACTCTCTGA ACTTCGTAAC GGAATGGCAC 361 GACGGACCGT CACGGGCGTG ACGGACCGTC ACAGACTCTT TGGTGGAAAT TGAGTCTCTG 421 AACCTTGCGA CGACCTGCAG GACGGACCGT CGCAGGCACG ACGGGCCATC ACAGGTTGCG 481 TAATCCCAGT CTGGGTCGGA TTTCTTTACA CGTTTTAAGG GACGTTTTGG ACTATTCCTA 541 CTTTAATTAT AAAGTTAGTG GGTTTATGTT AATAAGTCTA ATTACCTGGG GGTTAAAAGA 601 GGTAACCTTG AGTAAATTAG TGGGTTATTA TTCCATCTTT TATTCTTAAT TATATGCTAA 661 TTAGGGTAAA AGAAGGAGGG TTTGAATAAG AAAAAGAAAA GAACAGAAAG AGAGAGAAGG 721 AGAATCGAT Predicted gene structure (within gDNA segment 9099 to 5044): Exon 1 9098 9036 ( 63 n); cDNA 91 154 ( 64 n); score: 0.595 Intron 1 9035 8385 ( 651 n); Pd: 0.000 (s: 0.58), Pa: 0.221 (s: 0) Exon 2 8384 8367 ( 18 n); cDNA 155 171 ( 17 n); score: 0.611 Intron 2 8366 7283 (1084 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.90) Exon 3 7282 6735 ( 548 n); cDNA 172 724 ( 553 n); score: 0.839 PPA cDNA 31 14 MATCH C06HBa0158P14.1-16- SGN-E550212- 0.813 629 0.863 C PGS_C06HBa0158P14.1-16-_SGN-E550212- (9098 9036,8384 8367,7282 6735) Alignment (genomic DNA sequence = upper lines): AATTTATAAT TTATAATAT- TTTTTTTATT TAAATTTTTT AATTTAAAAT ATCAAATTAA 9040 |||| || | | | || || ||| ||| | | | || | || | || || | | ||| AATTCATGGT TGAGAAAATC TTTGTTTCTA ATAGTGTTAT AAATCGTAAA ATAATAATAA 150 TATAATCTAT TTTAACTTTA AAAAATAATA AATTTAACTT TCGAAAAATA TAATATAACA 8980 ||| TATT...... .......... .......... .......... .......... .......... 154 ACTAAAAAAA ACCAATGAAA TAACATTCAT TAAAGTTATA GCAGTGTATT TTATTTTACC 8920 .......... .......... .......... .......... .......... .......... 154 TGCTCCTTAT TGTAAAAGCA ATTTATTTTT TTACATTTGT TCATAAAAAA AATAATTTAT 8860 .......... .......... .......... .......... .......... .......... 154 TACTAGTTCT TTTCAACAGT TTATATATCA AATTTAAGAA AAAAGGTAAT GGATCGTTAT 8800 .......... .......... .......... .......... .......... .......... 154 AGAGGCCCCT TTAATTTCAG CCCCCTATTT ATTTATTTTT ACATATGTAT ACATTATACT 8740 .......... .......... .......... .......... .......... .......... 154 CTTTTGTTTT AATGTATATA ATGATGTTTT AATTTTATGA GTCAAATGAG TTACCTTTTA 8680 .......... .......... .......... .......... .......... .......... 154 CTATAATATT TTATATTATT AACTATTGTG ACTTCAATAC TTATTATATA GTTTCAAACA 8620 .......... .......... .......... .......... .......... .......... 154 TATAAATTTT ATTTTTAAAA ATTTATATTT AAGCATACAA TCAAAGTTCA AAAGTTCTTA 8560 .......... .......... .......... .......... .......... .......... 154 TCCCCAAAAG TGAAAAATAA CATATAATTC GATATACAGA GAGTATTTAA ATTTGGGCAA 8500 .......... .......... .......... .......... .......... .......... 154 CTTTCACATA TAGCAAATAA AAAATTCATA TTTGTATGCT ATAGCAAAGT TTGCATAATT 8440 .......... .......... .......... .......... .......... .......... 154 GCGCTCAATA GCAAACATTG AAACTGTATA ATTCGCTATA CATATACATT TGAAGCAAAT 8380 || | .......... .......... .......... .......... .......... .....TAAGT 159 TGTATAAAAC AGAGTGCATA AAACAAGAAA GAGAAAGACA CTTGGGCAGA GAACTGTATA 8320 | | | ||| | | AGGA-AGAAC ATA....... .......... .......... .......... .......... 171 AAAATGATAT GTATAAAACG AATTGTATTA TTATAAGTGT ATAGAATAAT TATATACAAT 8260 .......... .......... .......... .......... .......... .......... 171 TTGAATTTGT ATAAAATGAG AAAGAGAGAA AGACAAAAGA GACTTGACAA GGAATATACA 8200 .......... .......... .......... .......... .......... .......... 171 ATTGAATCGA ATTGTATAAA ATGAGAAAGA GAGAAATTAG ATACAATTTG AAAATTGTAT 8140 .......... .......... .......... .......... .......... .......... 171 AAAATGAGAA AGAGAGAAAG GCAAAAGAAA TTGCGCAGGG GAGTATTTAT TGTATAATTA 8080 .......... .......... .......... .......... .......... .......... 171 TAAGTGTATA GGACGAAAAT ATATGTACTT GCAAGTGTAT ATACAATTTT CTCACGCTTT 8020 .......... .......... .......... .......... .......... .......... 171 ATACAAACAA AAACACAATT TATACACTTC ACTTCTGTTT GTATAAGTGA GAAAGGCGGG 7960 .......... .......... .......... .......... .......... .......... 171 GGTGGCGAGC AAGATTTGGG AGAGTGGCGA GCGAGATCTG GAAGAGGGGA GAGAGGAGAA 7900 .......... .......... .......... .......... .......... .......... 171 CAAAAATATA TGTATTTATA CAATTTTCTC TACTTTATCA ATTATAAACA ATTTTTATAC 7840 .......... .......... .......... .......... .......... .......... 171 ACTTCTGTTT GTATAAAAAG TGAGGAAGCG AACGAGAGAT TAGAGGAGAG TAGCGAGCGA 7780 .......... .......... .......... .......... .......... .......... 171 GATATTTGGG AGAGAGGCGC CTGACAATTT TTTTGCAAAC GTTAGCTATG GAGCACAATT 7720 .......... .......... .......... .......... .......... .......... 171 AAATCAAACC CTAGCTACTC CATTTATTTT AGGTTATTAG TTTGCTATTA TATAAGATTT 7660 .......... .......... .......... .......... .......... .......... 171 TGTCTATATA ATTTTTTTTC ATACTATAGG TAAACTTCTT TGATTGTTAG ATTTAAAATC 7600 .......... .......... .......... .......... .......... .......... 171 TTGAAATAAA ATAGGTACCT TCTACATTAT ATAAATATGA CCCTAATGCT ACAAAATTAT 7540 .......... .......... .......... .......... .......... .......... 171 TTGGCTAAAA AATTATTTGG TCCAATATAT TCCTATTTGT TGAAATGATT TCCCTACTTA 7480 .......... .......... .......... .......... .......... .......... 171 ATAATTGACA CTAGATCTTG CCTTGTGTTA TAATTGAAGA TATATTTGAT ACCACATGCC 7420 .......... .......... .......... .......... .......... .......... 171 TATTTTAATC AAAGTTGTAT TTAAAATTCT GATTCCACGT TCGTTACAGT TAAACTTTTT 7360 .......... .......... .......... .......... .......... .......... 171 TAGTTTATTT TTAAAAAAAA GATAGTTTAT TAAGGATTTT CTTCCCTTCT TCTACCTTGT 7300 .......... .......... .......... .......... .......... .......... 171 TGTCCGATAA TATATAGCTT GTAACGACCT GTTTAGTCAT TTTGAGCAGC AGATTTTATT 7240 | |||||||||| |||||||| | |||||| ||| |||||||||| .......... .......AAT GTAACGACCT GTTTAGTCGT TTTGAGTAGC AGATTTTATT 214 TCTGGAAAAA TAGGCTGAGG CAACGGATCC CACGACGGAC CGTCATGGGC ACGACGGACC 7180 | |||||||| ||| |||| | ||||| || |||||||||| ||||||| || |||| ||||| TTTGGAAAAA CAGGTTGAGA CGACGGAACC CACGACGGAC CGTCATGAGC ACGATGGACC 274 GTCGCAGGGT CTCGTTTCAA AACACTTAGA AAATCTGAAA TTGGGTACTG AAAATCGACT 7120 |||| | || |||||||||| |||||||||| || ||||||| ||||||||| |||||||||| GTCGAGGAGT CTCGTTTCAA AACACTTAGA AATTCTGAAA TTGGGTACTA AAAATCGACT 334 CTCTGAACTT CGTGACGGAA TGGCAGGACG GACCGTCACA GGCGTGACGG ACCGTCACAG 7060 |||||||||| ||| |||||| ||||| |||| ||||||||| |||||||||| |||||||||| CTCTGAACTT CGTAACGGAA TGGCACGACG GACCGTCACG GGCGTGACGG ACCGTCACAG 394 AGCCTTCAGT GAAAACCCAT TCTCTGAACC TTACGACGAC TTGCAGGACG GACCGTCGTA 7000 | ||| || | ||| | |||||||||| || ||||||| ||||||||| |||||||| | ACTCTTTGGT GGAAATTGAG TCTCTGAACC TTGCGACGAC CTGCAGGACG GACCGTCGCA 454 GGCACGACGG GCCGTCGCAG GCTACGCAAT CCCAGGCTGT GTCGGATTTC TGTTAATTTA 6940 |||||||||| ||| || ||| | | || ||| ||||| ||| |||||||||| | ||| GGCACGACGG GCCATCACAG GTTGCGTAAT CCCAGTCTGG GTCGGATTTC T-TTACACGT 513 TTTAAGGGGC ATTTTGGACT ATTTCCTACT TTAATTATAA AG-TGGTGGG TTAATGTTAA 6881 |||||||| | ||||||||| | |||||||| |||||||||| || | ||||| || ||||||| TTTAAGGGAC GTTTTGGACT A-TTCCTACT TTAATTATAA AGTTAGTGGG TTTATGTTAA 572 TAAGTCTAAT TACTTGGGGG TTAAAAGAGG TAACCTTAAG TTAACTAGTG GG------TT 6827 |||||||||| ||| |||||| |||||||||| ||||||| || | || ||||| || || TAAGTCTAAT TACCTGGGGG TTAAAAGAGG TAACCTTGAG TAAATTAGTG GGTTATTATT 632 --ATCTTTTA TACTTAATTA TATGTTAATT AGGGTAAAAG AAAGAGGGTT GGAATAAGAA 6769 |||||||| | |||||||| |||| ||||| |||||||||| || ||||||| ||||||||| CCATCTTTTA TTCTTAATTA TATGCTAATT AGGGTAAAAG AAGGAGGGTT TGAATAAGAA 692 AAATAAGAAA GAACAAAGAG AGACAGAAAA AGAA 6735 ||| | ||| ||||| | || ||| |||| |||| AAA-GA-AAA GAACAGAAAG AGAGAGAAGG AGAA 724 hqPGS_C06HBa0158P14.1-16-_SGN-E550212- (7282 6735) ******************************************************************************** EST sequence 7 -strand 732 n (File: SGN-E550201-) 1 GGCCCCCCCT CGAGTTTTTT TTTTTTTTTT TTATGAATTA GCTCAATGAA AAATGAGTAA 61 ATTTTTTATA TTTTATGGCA TAATTTTTTC ATTAATTCAT GGTNGAGAAA ATCTTTGTTT 121 CTAATAGTGT TATAAATCGT AAAATAATAA TAATATTTAA GTAGGAAGAA CATAAATGTA 181 ACGACCTGTT TAGTCGTTTT GAGTAGCAGA TTTTATTTTT GGAAAAACAG GTTGAGACGA 241 CGGAACCCAC GACGGACCGT CATGAGCACG ATGGACCGTC GAGGAGTCTC GTTTCAAAAC 301 ACTTAGAAAT TCTGAAATTG GGTACTAAAA ATCGACTCTC TGAACTTCGT AACGGAATGG 361 CACGACGGAC CGTCACGGGC GTGACGGACC GTCACAGACT CTTTGGTGGA AATTGAGTCT 421 CTGAACCTTG CGACGACCTG CAGGACGGAC CGTCGCAGGC ACGACGGGCC ATCACAGGTT 481 GCGTAATCCC AGTCTGGGTC GGATTTCTTT ACACGTTTTA AGGGACGTTT TGGACTATTC 541 CTACTTTAAT TATAAAGTTA GTGGGTTTAT GTTAATAAGT CTAATTACCT GGGGGTTAAA 601 AGAGGTAACC TTGAGTAAAT TAGTGGGTTA TTATTCCATC TTTTATTCTT AATTATATGC 661 TAATTAGGGT AAAAGAAGGA GGGTTTGAAT AAGAAAAAGA AAAGAACAGA AAGAGAGAGA 721 AGGAGAATCG AT Predicted gene structure (within gDNA segment 9099 to 5044): Exon 1 9098 9036 ( 63 n); cDNA 94 157 ( 64 n); score: 0.579 Intron 1 9035 8385 ( 651 n); Pd: 0.000 (s: 0.58), Pa: 0.221 (s: 0) Exon 2 8384 8367 ( 18 n); cDNA 158 174 ( 17 n); score: 0.611 Intron 2 8366 7283 (1084 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.90) Exon 3 7282 6735 ( 548 n); cDNA 175 727 ( 553 n); score: 0.839 PPA cDNA 34 15 MATCH C06HBa0158P14.1-16- SGN-E550201- 0.812 629 0.859 C PGS_C06HBa0158P14.1-16-_SGN-E550201- (9098 9036,8384 8367,7282 6735) Alignment (genomic DNA sequence = upper lines): AATTTATAAT TTATAATAT- TTTTTTTATT TAAATTTTTT AATTTAAAAT ATCAAATTAA 9040 |||| || | | || || ||| ||| | | | || | || | || || | | ||| AATTCATGGT NGAGAAAATC TTTGTTTCTA ATAGTGTTAT AAATCGTAAA ATAATAATAA 153 TATAATCTAT TTTAACTTTA AAAAATAATA AATTTAACTT TCGAAAAATA TAATATAACA 8980 ||| TATT...... .......... .......... .......... .......... .......... 157 ACTAAAAAAA ACCAATGAAA TAACATTCAT TAAAGTTATA GCAGTGTATT TTATTTTACC 8920 .......... .......... .......... .......... .......... .......... 157 TGCTCCTTAT TGTAAAAGCA ATTTATTTTT TTACATTTGT TCATAAAAAA AATAATTTAT 8860 .......... .......... .......... .......... .......... .......... 157 TACTAGTTCT TTTCAACAGT TTATATATCA AATTTAAGAA AAAAGGTAAT GGATCGTTAT 8800 .......... .......... .......... .......... .......... .......... 157 AGAGGCCCCT TTAATTTCAG CCCCCTATTT ATTTATTTTT ACATATGTAT ACATTATACT 8740 .......... .......... .......... .......... .......... .......... 157 CTTTTGTTTT AATGTATATA ATGATGTTTT AATTTTATGA GTCAAATGAG TTACCTTTTA 8680 .......... .......... .......... .......... .......... .......... 157 CTATAATATT TTATATTATT AACTATTGTG ACTTCAATAC TTATTATATA GTTTCAAACA 8620 .......... .......... .......... .......... .......... .......... 157 TATAAATTTT ATTTTTAAAA ATTTATATTT AAGCATACAA TCAAAGTTCA AAAGTTCTTA 8560 .......... .......... .......... .......... .......... .......... 157 TCCCCAAAAG TGAAAAATAA CATATAATTC GATATACAGA GAGTATTTAA ATTTGGGCAA 8500 .......... .......... .......... .......... .......... .......... 157 CTTTCACATA TAGCAAATAA AAAATTCATA TTTGTATGCT ATAGCAAAGT TTGCATAATT 8440 .......... .......... .......... .......... .......... .......... 157 GCGCTCAATA GCAAACATTG AAACTGTATA ATTCGCTATA CATATACATT TGAAGCAAAT 8380 || | .......... .......... .......... .......... .......... .....TAAGT 162 TGTATAAAAC AGAGTGCATA AAACAAGAAA GAGAAAGACA CTTGGGCAGA GAACTGTATA 8320 | | | ||| | | AGGA-AGAAC ATA....... .......... .......... .......... .......... 174 AAAATGATAT GTATAAAACG AATTGTATTA TTATAAGTGT ATAGAATAAT TATATACAAT 8260 .......... .......... .......... .......... .......... .......... 174 TTGAATTTGT ATAAAATGAG AAAGAGAGAA AGACAAAAGA GACTTGACAA GGAATATACA 8200 .......... .......... .......... .......... .......... .......... 174 ATTGAATCGA ATTGTATAAA ATGAGAAAGA GAGAAATTAG ATACAATTTG AAAATTGTAT 8140 .......... .......... .......... .......... .......... .......... 174 AAAATGAGAA AGAGAGAAAG GCAAAAGAAA TTGCGCAGGG GAGTATTTAT TGTATAATTA 8080 .......... .......... .......... .......... .......... .......... 174 TAAGTGTATA GGACGAAAAT ATATGTACTT GCAAGTGTAT ATACAATTTT CTCACGCTTT 8020 .......... .......... .......... .......... .......... .......... 174 ATACAAACAA AAACACAATT TATACACTTC ACTTCTGTTT GTATAAGTGA GAAAGGCGGG 7960 .......... .......... .......... .......... .......... .......... 174 GGTGGCGAGC AAGATTTGGG AGAGTGGCGA GCGAGATCTG GAAGAGGGGA GAGAGGAGAA 7900 .......... .......... .......... .......... .......... .......... 174 CAAAAATATA TGTATTTATA CAATTTTCTC TACTTTATCA ATTATAAACA ATTTTTATAC 7840 .......... .......... .......... .......... .......... .......... 174 ACTTCTGTTT GTATAAAAAG TGAGGAAGCG AACGAGAGAT TAGAGGAGAG TAGCGAGCGA 7780 .......... .......... .......... .......... .......... .......... 174 GATATTTGGG AGAGAGGCGC CTGACAATTT TTTTGCAAAC GTTAGCTATG GAGCACAATT 7720 .......... .......... .......... .......... .......... .......... 174 AAATCAAACC CTAGCTACTC CATTTATTTT AGGTTATTAG TTTGCTATTA TATAAGATTT 7660 .......... .......... .......... .......... .......... .......... 174 TGTCTATATA ATTTTTTTTC ATACTATAGG TAAACTTCTT TGATTGTTAG ATTTAAAATC 7600 .......... .......... .......... .......... .......... .......... 174 TTGAAATAAA ATAGGTACCT TCTACATTAT ATAAATATGA CCCTAATGCT ACAAAATTAT 7540 .......... .......... .......... .......... .......... .......... 174 TTGGCTAAAA AATTATTTGG TCCAATATAT TCCTATTTGT TGAAATGATT TCCCTACTTA 7480 .......... .......... .......... .......... .......... .......... 174 ATAATTGACA CTAGATCTTG CCTTGTGTTA TAATTGAAGA TATATTTGAT ACCACATGCC 7420 .......... .......... .......... .......... .......... .......... 174 TATTTTAATC AAAGTTGTAT TTAAAATTCT GATTCCACGT TCGTTACAGT TAAACTTTTT 7360 .......... .......... .......... .......... .......... .......... 174 TAGTTTATTT TTAAAAAAAA GATAGTTTAT TAAGGATTTT CTTCCCTTCT TCTACCTTGT 7300 .......... .......... .......... .......... .......... .......... 174 TGTCCGATAA TATATAGCTT GTAACGACCT GTTTAGTCAT TTTGAGCAGC AGATTTTATT 7240 | |||||||||| |||||||| | |||||| ||| |||||||||| .......... .......AAT GTAACGACCT GTTTAGTCGT TTTGAGTAGC AGATTTTATT 217 TCTGGAAAAA TAGGCTGAGG CAACGGATCC CACGACGGAC CGTCATGGGC ACGACGGACC 7180 | |||||||| ||| |||| | ||||| || |||||||||| ||||||| || |||| ||||| TTTGGAAAAA CAGGTTGAGA CGACGGAACC CACGACGGAC CGTCATGAGC ACGATGGACC 277 GTCGCAGGGT CTCGTTTCAA AACACTTAGA AAATCTGAAA TTGGGTACTG AAAATCGACT 7120 |||| | || |||||||||| |||||||||| || ||||||| ||||||||| |||||||||| GTCGAGGAGT CTCGTTTCAA AACACTTAGA AATTCTGAAA TTGGGTACTA AAAATCGACT 337 CTCTGAACTT CGTGACGGAA TGGCAGGACG GACCGTCACA GGCGTGACGG ACCGTCACAG 7060 |||||||||| ||| |||||| ||||| |||| ||||||||| |||||||||| |||||||||| CTCTGAACTT CGTAACGGAA TGGCACGACG GACCGTCACG GGCGTGACGG ACCGTCACAG 397 AGCCTTCAGT GAAAACCCAT TCTCTGAACC TTACGACGAC TTGCAGGACG GACCGTCGTA 7000 | ||| || | ||| | |||||||||| || ||||||| ||||||||| |||||||| | ACTCTTTGGT GGAAATTGAG TCTCTGAACC TTGCGACGAC CTGCAGGACG GACCGTCGCA 457 GGCACGACGG GCCGTCGCAG GCTACGCAAT CCCAGGCTGT GTCGGATTTC TGTTAATTTA 6940 |||||||||| ||| || ||| | | || ||| ||||| ||| |||||||||| | ||| GGCACGACGG GCCATCACAG GTTGCGTAAT CCCAGTCTGG GTCGGATTTC T-TTACACGT 516 TTTAAGGGGC ATTTTGGACT ATTTCCTACT TTAATTATAA AG-TGGTGGG TTAATGTTAA 6881 |||||||| | ||||||||| | |||||||| |||||||||| || | ||||| || ||||||| TTTAAGGGAC GTTTTGGACT A-TTCCTACT TTAATTATAA AGTTAGTGGG TTTATGTTAA 575 TAAGTCTAAT TACTTGGGGG TTAAAAGAGG TAACCTTAAG TTAACTAGTG GG------TT 6827 |||||||||| ||| |||||| |||||||||| ||||||| || | || ||||| || || TAAGTCTAAT TACCTGGGGG TTAAAAGAGG TAACCTTGAG TAAATTAGTG GGTTATTATT 635 --ATCTTTTA TACTTAATTA TATGTTAATT AGGGTAAAAG AAAGAGGGTT GGAATAAGAA 6769 |||||||| | |||||||| |||| ||||| |||||||||| || ||||||| ||||||||| CCATCTTTTA TTCTTAATTA TATGCTAATT AGGGTAAAAG AAGGAGGGTT TGAATAAGAA 695 AAATAAGAAA GAACAAAGAG AGACAGAAAA AGAA 6735 ||| | ||| ||||| | || ||| |||| |||| AAA-GA-AAA GAACAGAAAG AGAGAGAAGG AGAA 727 hqPGS_C06HBa0158P14.1-16-_SGN-E550201- (7282 6735) ******************************************************************************** EST sequence 9 -strand 715 n (File: SGN-E550335-) 1 TTTTTTTTTT TTTTTTATGA ATTAGCTCAA TGAAAAATGA GTAAATTTTT TATATTTTAT 61 GGCATAATTT TTTCATTAAT TCATGGTNGA GAAAATCTTT GTTTCTAATA GTGTTATAAA 121 TCGTAAAATA ATAATAATAT TTAAGTAGGA AGAACATAAA TGTAACGACC TGTTTAGTCG 181 TTTTGAGTAG CAGATTTTAT TTTTGGAAAA ACAGGTTGAG ACGACGGAAC CCACGACGGA 241 CCGTCATGAG CACGATGGAC CGTCGAGGAG TCTCGTTTCA AAACACTTAG AAATTCTGAA 301 ATTGGGTACT AAAAATCGAC TCTCTGAACT TCGTAACGGA ATGGCACGAC GGACCGTCAC 361 GGGCGTGACG GACCGTCACA GATTCTTTGG TGGAAATTGA GTCTCTGAAC CTTGCGACGA 421 CCTGCAGGAC GGACCGTCGC AGGCACGACG GGCCATCACA GGTTGCGTAA TCCCAGTCTG 481 GGTCGGATTT CTTTACACGT TTTAAGGGAC GTTTTGGACT ATTCCTACTT TAATTATAAA 541 GTTAGTGGGT TTATGTTAAT AAGTCTAATT ACCTGGGGGT TAAAAGAGGT AACCTTGAGT 601 AAATTAGTGG GTTATTATTC CATCTTTTAT TCTTAATTAT ATGCTAATTA GGGTAAAAGA 661 AGGAGGGTTG AATAAGAAAA AGAAAAGAAC AGAAAGAGAG AGAAGGAGAA TCGAT Predicted gene structure (within gDNA segment 9099 to 5054): Exon 1 9098 9036 ( 63 n); cDNA 78 141 ( 64 n); score: 0.579 Intron 1 9035 8385 ( 651 n); Pd: 0.000 (s: 0.58), Pa: 0.221 (s: 0) Exon 2 8384 8367 ( 18 n); cDNA 142 158 ( 17 n); score: 0.611 Intron 2 8366 7283 (1084 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.90) Exon 3 7282 6735 ( 548 n); cDNA 159 710 ( 552 n); score: 0.839 PPA cDNA 18 1 MATCH C06HBa0158P14.1-16- SGN-E550335- 0.812 629 0.880 C PGS_C06HBa0158P14.1-16-_SGN-E550335- (9098 9036,8384 8367,7282 6735) Alignment (genomic DNA sequence = upper lines): AATTTATAAT TTATAATAT- TTTTTTTATT TAAATTTTTT AATTTAAAAT ATCAAATTAA 9040 |||| || | | || || ||| ||| | | | || | || | || || | | ||| AATTCATGGT NGAGAAAATC TTTGTTTCTA ATAGTGTTAT AAATCGTAAA ATAATAATAA 137 TATAATCTAT TTTAACTTTA AAAAATAATA AATTTAACTT TCGAAAAATA TAATATAACA 8980 ||| TATT...... .......... .......... .......... .......... .......... 141 ACTAAAAAAA ACCAATGAAA TAACATTCAT TAAAGTTATA GCAGTGTATT TTATTTTACC 8920 .......... .......... .......... .......... .......... .......... 141 TGCTCCTTAT TGTAAAAGCA ATTTATTTTT TTACATTTGT TCATAAAAAA AATAATTTAT 8860 .......... .......... .......... .......... .......... .......... 141 TACTAGTTCT TTTCAACAGT TTATATATCA AATTTAAGAA AAAAGGTAAT GGATCGTTAT 8800 .......... .......... .......... .......... .......... .......... 141 AGAGGCCCCT TTAATTTCAG CCCCCTATTT ATTTATTTTT ACATATGTAT ACATTATACT 8740 .......... .......... .......... .......... .......... .......... 141 CTTTTGTTTT AATGTATATA ATGATGTTTT AATTTTATGA GTCAAATGAG TTACCTTTTA 8680 .......... .......... .......... .......... .......... .......... 141 CTATAATATT TTATATTATT AACTATTGTG ACTTCAATAC TTATTATATA GTTTCAAACA 8620 .......... .......... .......... .......... .......... .......... 141 TATAAATTTT ATTTTTAAAA ATTTATATTT AAGCATACAA TCAAAGTTCA AAAGTTCTTA 8560 .......... .......... .......... .......... .......... .......... 141 TCCCCAAAAG TGAAAAATAA CATATAATTC GATATACAGA GAGTATTTAA ATTTGGGCAA 8500 .......... .......... .......... .......... .......... .......... 141 CTTTCACATA TAGCAAATAA AAAATTCATA TTTGTATGCT ATAGCAAAGT TTGCATAATT 8440 .......... .......... .......... .......... .......... .......... 141 GCGCTCAATA GCAAACATTG AAACTGTATA ATTCGCTATA CATATACATT TGAAGCAAAT 8380 || | .......... .......... .......... .......... .......... .....TAAGT 146 TGTATAAAAC AGAGTGCATA AAACAAGAAA GAGAAAGACA CTTGGGCAGA GAACTGTATA 8320 | | | ||| | | AGGA-AGAAC ATA....... .......... .......... .......... .......... 158 AAAATGATAT GTATAAAACG AATTGTATTA TTATAAGTGT ATAGAATAAT TATATACAAT 8260 .......... .......... .......... .......... .......... .......... 158 TTGAATTTGT ATAAAATGAG AAAGAGAGAA AGACAAAAGA GACTTGACAA GGAATATACA 8200 .......... .......... .......... .......... .......... .......... 158 ATTGAATCGA ATTGTATAAA ATGAGAAAGA GAGAAATTAG ATACAATTTG AAAATTGTAT 8140 .......... .......... .......... .......... .......... .......... 158 AAAATGAGAA AGAGAGAAAG GCAAAAGAAA TTGCGCAGGG GAGTATTTAT TGTATAATTA 8080 .......... .......... .......... .......... .......... .......... 158 TAAGTGTATA GGACGAAAAT ATATGTACTT GCAAGTGTAT ATACAATTTT CTCACGCTTT 8020 .......... .......... .......... .......... .......... .......... 158 ATACAAACAA AAACACAATT TATACACTTC ACTTCTGTTT GTATAAGTGA GAAAGGCGGG 7960 .......... .......... .......... .......... .......... .......... 158 GGTGGCGAGC AAGATTTGGG AGAGTGGCGA GCGAGATCTG GAAGAGGGGA GAGAGGAGAA 7900 .......... .......... .......... .......... .......... .......... 158 CAAAAATATA TGTATTTATA CAATTTTCTC TACTTTATCA ATTATAAACA ATTTTTATAC 7840 .......... .......... .......... .......... .......... .......... 158 ACTTCTGTTT GTATAAAAAG TGAGGAAGCG AACGAGAGAT TAGAGGAGAG TAGCGAGCGA 7780 .......... .......... .......... .......... .......... .......... 158 GATATTTGGG AGAGAGGCGC CTGACAATTT TTTTGCAAAC GTTAGCTATG GAGCACAATT 7720 .......... .......... .......... .......... .......... .......... 158 AAATCAAACC CTAGCTACTC CATTTATTTT AGGTTATTAG TTTGCTATTA TATAAGATTT 7660 .......... .......... .......... .......... .......... .......... 158 TGTCTATATA ATTTTTTTTC ATACTATAGG TAAACTTCTT TGATTGTTAG ATTTAAAATC 7600 .......... .......... .......... .......... .......... .......... 158 TTGAAATAAA ATAGGTACCT TCTACATTAT ATAAATATGA CCCTAATGCT ACAAAATTAT 7540 .......... .......... .......... .......... .......... .......... 158 TTGGCTAAAA AATTATTTGG TCCAATATAT TCCTATTTGT TGAAATGATT TCCCTACTTA 7480 .......... .......... .......... .......... .......... .......... 158 ATAATTGACA CTAGATCTTG CCTTGTGTTA TAATTGAAGA TATATTTGAT ACCACATGCC 7420 .......... .......... .......... .......... .......... .......... 158 TATTTTAATC AAAGTTGTAT TTAAAATTCT GATTCCACGT TCGTTACAGT TAAACTTTTT 7360 .......... .......... .......... .......... .......... .......... 158 TAGTTTATTT TTAAAAAAAA GATAGTTTAT TAAGGATTTT CTTCCCTTCT TCTACCTTGT 7300 .......... .......... .......... .......... .......... .......... 158 TGTCCGATAA TATATAGCTT GTAACGACCT GTTTAGTCAT TTTGAGCAGC AGATTTTATT 7240 | |||||||||| |||||||| | |||||| ||| |||||||||| .......... .......AAT GTAACGACCT GTTTAGTCGT TTTGAGTAGC AGATTTTATT 201 TCTGGAAAAA TAGGCTGAGG CAACGGATCC CACGACGGAC CGTCATGGGC ACGACGGACC 7180 | |||||||| ||| |||| | ||||| || |||||||||| ||||||| || |||| ||||| TTTGGAAAAA CAGGTTGAGA CGACGGAACC CACGACGGAC CGTCATGAGC ACGATGGACC 261 GTCGCAGGGT CTCGTTTCAA AACACTTAGA AAATCTGAAA TTGGGTACTG AAAATCGACT 7120 |||| | || |||||||||| |||||||||| || ||||||| ||||||||| |||||||||| GTCGAGGAGT CTCGTTTCAA AACACTTAGA AATTCTGAAA TTGGGTACTA AAAATCGACT 321 CTCTGAACTT CGTGACGGAA TGGCAGGACG GACCGTCACA GGCGTGACGG ACCGTCACAG 7060 |||||||||| ||| |||||| ||||| |||| ||||||||| |||||||||| |||||||||| CTCTGAACTT CGTAACGGAA TGGCACGACG GACCGTCACG GGCGTGACGG ACCGTCACAG 381 AGCCTTCAGT GAAAACCCAT TCTCTGAACC TTACGACGAC TTGCAGGACG GACCGTCGTA 7000 | ||| || | ||| | |||||||||| || ||||||| ||||||||| |||||||| | ATTCTTTGGT GGAAATTGAG TCTCTGAACC TTGCGACGAC CTGCAGGACG GACCGTCGCA 441 GGCACGACGG GCCGTCGCAG GCTACGCAAT CCCAGGCTGT GTCGGATTTC TGTTAATTTA 6940 |||||||||| ||| || ||| | | || ||| ||||| ||| |||||||||| | ||| GGCACGACGG GCCATCACAG GTTGCGTAAT CCCAGTCTGG GTCGGATTTC T-TTACACGT 500 TTTAAGGGGC ATTTTGGACT ATTTCCTACT TTAATTATAA AG-TGGTGGG TTAATGTTAA 6881 |||||||| | ||||||||| | |||||||| |||||||||| || | ||||| || ||||||| TTTAAGGGAC GTTTTGGACT A-TTCCTACT TTAATTATAA AGTTAGTGGG TTTATGTTAA 559 TAAGTCTAAT TACTTGGGGG TTAAAAGAGG TAACCTTAAG TTAACTAGTG GG------TT 6827 |||||||||| ||| |||||| |||||||||| ||||||| || | || ||||| || || TAAGTCTAAT TACCTGGGGG TTAAAAGAGG TAACCTTGAG TAAATTAGTG GGTTATTATT 619 --ATCTTTTA TACTTAATTA TATGTTAATT AGGGTAAAAG AAAGAGGGTT GGAATAAGAA 6769 |||||||| | |||||||| |||| ||||| |||||||||| || ||||||| ||||||||| CCATCTTTTA TTCTTAATTA TATGCTAATT AGGGTAAAAG AAGGAGGGTT -GAATAAGAA 678 AAATAAGAAA GAACAAAGAG AGACAGAAAA AGAA 6735 ||| | ||| ||||| | || ||| |||| |||| AAA-GA-AAA GAACAGAAAG AGAGAGAAGG AGAA 710 hqPGS_C06HBa0158P14.1-16-_SGN-E550335- (7282 6735) ******************************************************************************** EST sequence 15 -strand 717 n (File: SGN-E550484-) 1 TTTTTTTTTT TTTTTTTATG AATTAGCTCA ATGAAAAATG AGTAAATTTT TTATATTTTA 61 TGGCATAATT TTTTCATTAA TTCATGGTTG AGAAAATCTT TGTTTCTAAT AGTGTTATAA 121 ATCGTAAAAT AATAATAATA TTTAAGTAGG AAGAACATAA ATGTAACGAC CTGTTTAGTC 181 GTTTTGAGTA GCAGATTTTA TTTTTGGAAA AACAGGTTGA GACGACGGAA CCCACGACGG 241 ACCGTCATGA GCACGATGGA CCGTCGAGGA GTCTCGTTTC AAAACACTTA GAAATTCTGA 301 AATTGGGTAC TAAAAATCGA CTCTCTGAAC TTCGTAACGG AATGGCACGA CGGACCGTCA 361 CGGGCGTGAC GGACCGTCAC AGACTCTTTG GTGGAAATTG AGTCTCTGAA CCTTGCGACG 421 ACCTGCAGGA CGGACCGTCG CAGGCACGAC GGGCCATCAC AGGTTGCGTA ATCCCAGTCT 481 GGGTCGGATT TCTTTACACG TTTTAAGGGA CGTTTTGGAC TATTCCTACT TTAATTATAA 541 AGTTAGTGGG TTTATGTTAA TAAGTCTAAT TACCTGGGGG TTAAAAGAGG TAACCTTGAG 601 TAAATTAGTG GGTTATTATT CCATCTTTTA TTCTTAATTA TATGCTAATT AGGGTAAAAG 661 AAGGAGGGTT TGAATAAGAA AAAGAAAAGA ACAGAAAGAG AGAGAAGGAG AATCGAT Predicted gene structure (within gDNA segment 9099 to 5044): Exon 1 9098 9036 ( 63 n); cDNA 79 142 ( 64 n); score: 0.595 Intron 1 9035 8385 ( 651 n); Pd: 0.000 (s: 0.58), Pa: 0.221 (s: 0) Exon 2 8384 8367 ( 18 n); cDNA 143 159 ( 17 n); score: 0.611 Intron 2 8366 7283 (1084 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.90) Exon 3 7282 6735 ( 548 n); cDNA 160 712 ( 553 n); score: 0.839 PPA cDNA 19 1 MATCH C06HBa0158P14.1-16- SGN-E550484- 0.813 629 0.877 C PGS_C06HBa0158P14.1-16-_SGN-E550484- (9098 9036,8384 8367,7282 6735) Alignment (genomic DNA sequence = upper lines): AATTTATAAT TTATAATAT- TTTTTTTATT TAAATTTTTT AATTTAAAAT ATCAAATTAA 9040 |||| || | | | || || ||| ||| | | | || | || | || || | | ||| AATTCATGGT TGAGAAAATC TTTGTTTCTA ATAGTGTTAT AAATCGTAAA ATAATAATAA 138 TATAATCTAT TTTAACTTTA AAAAATAATA AATTTAACTT TCGAAAAATA TAATATAACA 8980 ||| TATT...... .......... .......... .......... .......... .......... 142 ACTAAAAAAA ACCAATGAAA TAACATTCAT TAAAGTTATA GCAGTGTATT TTATTTTACC 8920 .......... .......... .......... .......... .......... .......... 142 TGCTCCTTAT TGTAAAAGCA ATTTATTTTT TTACATTTGT TCATAAAAAA AATAATTTAT 8860 .......... .......... .......... .......... .......... .......... 142 TACTAGTTCT TTTCAACAGT TTATATATCA AATTTAAGAA AAAAGGTAAT GGATCGTTAT 8800 .......... .......... .......... .......... .......... .......... 142 AGAGGCCCCT TTAATTTCAG CCCCCTATTT ATTTATTTTT ACATATGTAT ACATTATACT 8740 .......... .......... .......... .......... .......... .......... 142 CTTTTGTTTT AATGTATATA ATGATGTTTT AATTTTATGA GTCAAATGAG TTACCTTTTA 8680 .......... .......... .......... .......... .......... .......... 142 CTATAATATT TTATATTATT AACTATTGTG ACTTCAATAC TTATTATATA GTTTCAAACA 8620 .......... .......... .......... .......... .......... .......... 142 TATAAATTTT ATTTTTAAAA ATTTATATTT AAGCATACAA TCAAAGTTCA AAAGTTCTTA 8560 .......... .......... .......... .......... .......... .......... 142 TCCCCAAAAG TGAAAAATAA CATATAATTC GATATACAGA GAGTATTTAA ATTTGGGCAA 8500 .......... .......... .......... .......... .......... .......... 142 CTTTCACATA TAGCAAATAA AAAATTCATA TTTGTATGCT ATAGCAAAGT TTGCATAATT 8440 .......... .......... .......... .......... .......... .......... 142 GCGCTCAATA GCAAACATTG AAACTGTATA ATTCGCTATA CATATACATT TGAAGCAAAT 8380 || | .......... .......... .......... .......... .......... .....TAAGT 147 TGTATAAAAC AGAGTGCATA AAACAAGAAA GAGAAAGACA CTTGGGCAGA GAACTGTATA 8320 | | | ||| | | AGGA-AGAAC ATA....... .......... .......... .......... .......... 159 AAAATGATAT GTATAAAACG AATTGTATTA TTATAAGTGT ATAGAATAAT TATATACAAT 8260 .......... .......... .......... .......... .......... .......... 159 TTGAATTTGT ATAAAATGAG AAAGAGAGAA AGACAAAAGA GACTTGACAA GGAATATACA 8200 .......... .......... .......... .......... .......... .......... 159 ATTGAATCGA ATTGTATAAA ATGAGAAAGA GAGAAATTAG ATACAATTTG AAAATTGTAT 8140 .......... .......... .......... .......... .......... .......... 159 AAAATGAGAA AGAGAGAAAG GCAAAAGAAA TTGCGCAGGG GAGTATTTAT TGTATAATTA 8080 .......... .......... .......... .......... .......... .......... 159 TAAGTGTATA GGACGAAAAT ATATGTACTT GCAAGTGTAT ATACAATTTT CTCACGCTTT 8020 .......... .......... .......... .......... .......... .......... 159 ATACAAACAA AAACACAATT TATACACTTC ACTTCTGTTT GTATAAGTGA GAAAGGCGGG 7960 .......... .......... .......... .......... .......... .......... 159 GGTGGCGAGC AAGATTTGGG AGAGTGGCGA GCGAGATCTG GAAGAGGGGA GAGAGGAGAA 7900 .......... .......... .......... .......... .......... .......... 159 CAAAAATATA TGTATTTATA CAATTTTCTC TACTTTATCA ATTATAAACA ATTTTTATAC 7840 .......... .......... .......... .......... .......... .......... 159 ACTTCTGTTT GTATAAAAAG TGAGGAAGCG AACGAGAGAT TAGAGGAGAG TAGCGAGCGA 7780 .......... .......... .......... .......... .......... .......... 159 GATATTTGGG AGAGAGGCGC CTGACAATTT TTTTGCAAAC GTTAGCTATG GAGCACAATT 7720 .......... .......... .......... .......... .......... .......... 159 AAATCAAACC CTAGCTACTC CATTTATTTT AGGTTATTAG TTTGCTATTA TATAAGATTT 7660 .......... .......... .......... .......... .......... .......... 159 TGTCTATATA ATTTTTTTTC ATACTATAGG TAAACTTCTT TGATTGTTAG ATTTAAAATC 7600 .......... .......... .......... .......... .......... .......... 159 TTGAAATAAA ATAGGTACCT TCTACATTAT ATAAATATGA CCCTAATGCT ACAAAATTAT 7540 .......... .......... .......... .......... .......... .......... 159 TTGGCTAAAA AATTATTTGG TCCAATATAT TCCTATTTGT TGAAATGATT TCCCTACTTA 7480 .......... .......... .......... .......... .......... .......... 159 ATAATTGACA CTAGATCTTG CCTTGTGTTA TAATTGAAGA TATATTTGAT ACCACATGCC 7420 .......... .......... .......... .......... .......... .......... 159 TATTTTAATC AAAGTTGTAT TTAAAATTCT GATTCCACGT TCGTTACAGT TAAACTTTTT 7360 .......... .......... .......... .......... .......... .......... 159 TAGTTTATTT TTAAAAAAAA GATAGTTTAT TAAGGATTTT CTTCCCTTCT TCTACCTTGT 7300 .......... .......... .......... .......... .......... .......... 159 TGTCCGATAA TATATAGCTT GTAACGACCT GTTTAGTCAT TTTGAGCAGC AGATTTTATT 7240 | |||||||||| |||||||| | |||||| ||| |||||||||| .......... .......AAT GTAACGACCT GTTTAGTCGT TTTGAGTAGC AGATTTTATT 202 TCTGGAAAAA TAGGCTGAGG CAACGGATCC CACGACGGAC CGTCATGGGC ACGACGGACC 7180 | |||||||| ||| |||| | ||||| || |||||||||| ||||||| || |||| ||||| TTTGGAAAAA CAGGTTGAGA CGACGGAACC CACGACGGAC CGTCATGAGC ACGATGGACC 262 GTCGCAGGGT CTCGTTTCAA AACACTTAGA AAATCTGAAA TTGGGTACTG AAAATCGACT 7120 |||| | || |||||||||| |||||||||| || ||||||| ||||||||| |||||||||| GTCGAGGAGT CTCGTTTCAA AACACTTAGA AATTCTGAAA TTGGGTACTA AAAATCGACT 322 CTCTGAACTT CGTGACGGAA TGGCAGGACG GACCGTCACA GGCGTGACGG ACCGTCACAG 7060 |||||||||| ||| |||||| ||||| |||| ||||||||| |||||||||| |||||||||| CTCTGAACTT CGTAACGGAA TGGCACGACG GACCGTCACG GGCGTGACGG ACCGTCACAG 382 AGCCTTCAGT GAAAACCCAT TCTCTGAACC TTACGACGAC TTGCAGGACG GACCGTCGTA 7000 | ||| || | ||| | |||||||||| || ||||||| ||||||||| |||||||| | ACTCTTTGGT GGAAATTGAG TCTCTGAACC TTGCGACGAC CTGCAGGACG GACCGTCGCA 442 GGCACGACGG GCCGTCGCAG GCTACGCAAT CCCAGGCTGT GTCGGATTTC TGTTAATTTA 6940 |||||||||| ||| || ||| | | || ||| ||||| ||| |||||||||| | ||| GGCACGACGG GCCATCACAG GTTGCGTAAT CCCAGTCTGG GTCGGATTTC T-TTACACGT 501 TTTAAGGGGC ATTTTGGACT ATTTCCTACT TTAATTATAA AG-TGGTGGG TTAATGTTAA 6881 |||||||| | ||||||||| | |||||||| |||||||||| || | ||||| || ||||||| TTTAAGGGAC GTTTTGGACT A-TTCCTACT TTAATTATAA AGTTAGTGGG TTTATGTTAA 560 TAAGTCTAAT TACTTGGGGG TTAAAAGAGG TAACCTTAAG TTAACTAGTG GG------TT 6827 |||||||||| ||| |||||| |||||||||| ||||||| || | || ||||| || || TAAGTCTAAT TACCTGGGGG TTAAAAGAGG TAACCTTGAG TAAATTAGTG GGTTATTATT 620 --ATCTTTTA TACTTAATTA TATGTTAATT AGGGTAAAAG AAAGAGGGTT GGAATAAGAA 6769 |||||||| | |||||||| |||| ||||| |||||||||| || ||||||| ||||||||| CCATCTTTTA TTCTTAATTA TATGCTAATT AGGGTAAAAG AAGGAGGGTT TGAATAAGAA 680 AAATAAGAAA GAACAAAGAG AGACAGAAAA AGAA 6735 ||| | ||| ||||| | || ||| |||| |||| AAA-GA-AAA GAACAGAAAG AGAGAGAAGG AGAA 712 hqPGS_C06HBa0158P14.1-16-_SGN-E550484- (7282 6735) ******************************************************************************** EST sequence 16 -strand 713 n (File: SGN-E550211-) 1 TTTTTTTTTT TTTTATGAAT TAGCTCAATG AAAAATGAGT AAATTTTTTA TATTTTATGG 61 CATAATTTTT TCATTAATTC ATGGTTGAGA AAATCTTTGT TTCTAATAGT GTTATAAATC 121 GTAAAATAAT AATAATATTT AAGTAGGAAG AACATAAATG TAACGACCTG TTTAGTCGTT 181 TTGAGTAGCA GATTTTATTT TTGGAAAAAC AGGTTGAGAC GACGGAACCC ACGACGGACC 241 GTCATGAGCA CGATGGACCG TCGAGGAGTC TCGTTTCAAA ACACTTAGAA ATTCTGAAAT 301 TGGGTACTAA AAATCGACTC TCTGAACTTC GTAACGGAAT GGCACGACGG ACCGTCACGG 361 GCGTGACGGA CCGTCACAGA CTCTTTGGTG GAAATTGAGT CTCTGAACCT TGCGACGACC 421 TGCAGGACGG ACCGTCGCAG GCACGACGGG CCATCACAGG TTGCGTAATC CCAGTCTGGG 481 TCGGATTTCT TTACACGTTT TAAGGGACGT TTTGGACTAT TCCTACTTTA ATTATAAAGT 541 TAGTGGGTTT ATGTTAATAA GTCTAATTAC CTGGGGGTTA AAAGAGGTAA CCTTGAGTAA 601 ATTAGTGGGT TATTATTCCA TCTTTTATTC TTAATTATAT GCTAATTAGG GTAAAAGAAG 661 GAGGGTTGAA TAAGAAAAAG AAAAGAACAG AAAGAGAGAG AAGGAGAATC GAT Predicted gene structure (within gDNA segment 9099 to 5054): Exon 1 9098 9036 ( 63 n); cDNA 76 139 ( 64 n); score: 0.595 Intron 1 9035 8385 ( 651 n); Pd: 0.000 (s: 0.58), Pa: 0.221 (s: 0) Exon 2 8384 8367 ( 18 n); cDNA 140 156 ( 17 n); score: 0.611 Intron 2 8366 7283 (1084 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.90) Exon 3 7282 6735 ( 548 n); cDNA 157 708 ( 552 n); score: 0.839 PPA cDNA 16 1 MATCH C06HBa0158P14.1-16- SGN-E550211- 0.813 629 0.882 C PGS_C06HBa0158P14.1-16-_SGN-E550211- (9098 9036,8384 8367,7282 6735) Alignment (genomic DNA sequence = upper lines): AATTTATAAT TTATAATAT- TTTTTTTATT TAAATTTTTT AATTTAAAAT ATCAAATTAA 9040 |||| || | | | || || ||| ||| | | | || | || | || || | | ||| AATTCATGGT TGAGAAAATC TTTGTTTCTA ATAGTGTTAT AAATCGTAAA ATAATAATAA 135 TATAATCTAT TTTAACTTTA AAAAATAATA AATTTAACTT TCGAAAAATA TAATATAACA 8980 ||| TATT...... .......... .......... .......... .......... .......... 139 ACTAAAAAAA ACCAATGAAA TAACATTCAT TAAAGTTATA GCAGTGTATT TTATTTTACC 8920 .......... .......... .......... .......... .......... .......... 139 TGCTCCTTAT TGTAAAAGCA ATTTATTTTT TTACATTTGT TCATAAAAAA AATAATTTAT 8860 .......... .......... .......... .......... .......... .......... 139 TACTAGTTCT TTTCAACAGT TTATATATCA AATTTAAGAA AAAAGGTAAT GGATCGTTAT 8800 .......... .......... .......... .......... .......... .......... 139 AGAGGCCCCT TTAATTTCAG CCCCCTATTT ATTTATTTTT ACATATGTAT ACATTATACT 8740 .......... .......... .......... .......... .......... .......... 139 CTTTTGTTTT AATGTATATA ATGATGTTTT AATTTTATGA GTCAAATGAG TTACCTTTTA 8680 .......... .......... .......... .......... .......... .......... 139 CTATAATATT TTATATTATT AACTATTGTG ACTTCAATAC TTATTATATA GTTTCAAACA 8620 .......... .......... .......... .......... .......... .......... 139 TATAAATTTT ATTTTTAAAA ATTTATATTT AAGCATACAA TCAAAGTTCA AAAGTTCTTA 8560 .......... .......... .......... .......... .......... .......... 139 TCCCCAAAAG TGAAAAATAA CATATAATTC GATATACAGA GAGTATTTAA ATTTGGGCAA 8500 .......... .......... .......... .......... .......... .......... 139 CTTTCACATA TAGCAAATAA AAAATTCATA TTTGTATGCT ATAGCAAAGT TTGCATAATT 8440 .......... .......... .......... .......... .......... .......... 139 GCGCTCAATA GCAAACATTG AAACTGTATA ATTCGCTATA CATATACATT TGAAGCAAAT 8380 || | .......... .......... .......... .......... .......... .....TAAGT 144 TGTATAAAAC AGAGTGCATA AAACAAGAAA GAGAAAGACA CTTGGGCAGA GAACTGTATA 8320 | | | ||| | | AGGA-AGAAC ATA....... .......... .......... .......... .......... 156 AAAATGATAT GTATAAAACG AATTGTATTA TTATAAGTGT ATAGAATAAT TATATACAAT 8260 .......... .......... .......... .......... .......... .......... 156 TTGAATTTGT ATAAAATGAG AAAGAGAGAA AGACAAAAGA GACTTGACAA GGAATATACA 8200 .......... .......... .......... .......... .......... .......... 156 ATTGAATCGA ATTGTATAAA ATGAGAAAGA GAGAAATTAG ATACAATTTG AAAATTGTAT 8140 .......... .......... .......... .......... .......... .......... 156 AAAATGAGAA AGAGAGAAAG GCAAAAGAAA TTGCGCAGGG GAGTATTTAT TGTATAATTA 8080 .......... .......... .......... .......... .......... .......... 156 TAAGTGTATA GGACGAAAAT ATATGTACTT GCAAGTGTAT ATACAATTTT CTCACGCTTT 8020 .......... .......... .......... .......... .......... .......... 156 ATACAAACAA AAACACAATT TATACACTTC ACTTCTGTTT GTATAAGTGA GAAAGGCGGG 7960 .......... .......... .......... .......... .......... .......... 156 GGTGGCGAGC AAGATTTGGG AGAGTGGCGA GCGAGATCTG GAAGAGGGGA GAGAGGAGAA 7900 .......... .......... .......... .......... .......... .......... 156 CAAAAATATA TGTATTTATA CAATTTTCTC TACTTTATCA ATTATAAACA ATTTTTATAC 7840 .......... .......... .......... .......... .......... .......... 156 ACTTCTGTTT GTATAAAAAG TGAGGAAGCG AACGAGAGAT TAGAGGAGAG TAGCGAGCGA 7780 .......... .......... .......... .......... .......... .......... 156 GATATTTGGG AGAGAGGCGC CTGACAATTT TTTTGCAAAC GTTAGCTATG GAGCACAATT 7720 .......... .......... .......... .......... .......... .......... 156 AAATCAAACC CTAGCTACTC CATTTATTTT AGGTTATTAG TTTGCTATTA TATAAGATTT 7660 .......... .......... .......... .......... .......... .......... 156 TGTCTATATA ATTTTTTTTC ATACTATAGG TAAACTTCTT TGATTGTTAG ATTTAAAATC 7600 .......... .......... .......... .......... .......... .......... 156 TTGAAATAAA ATAGGTACCT TCTACATTAT ATAAATATGA CCCTAATGCT ACAAAATTAT 7540 .......... .......... .......... .......... .......... .......... 156 TTGGCTAAAA AATTATTTGG TCCAATATAT TCCTATTTGT TGAAATGATT TCCCTACTTA 7480 .......... .......... .......... .......... .......... .......... 156 ATAATTGACA CTAGATCTTG CCTTGTGTTA TAATTGAAGA TATATTTGAT ACCACATGCC 7420 .......... .......... .......... .......... .......... .......... 156 TATTTTAATC AAAGTTGTAT TTAAAATTCT GATTCCACGT TCGTTACAGT TAAACTTTTT 7360 .......... .......... .......... .......... .......... .......... 156 TAGTTTATTT TTAAAAAAAA GATAGTTTAT TAAGGATTTT CTTCCCTTCT TCTACCTTGT 7300 .......... .......... .......... .......... .......... .......... 156 TGTCCGATAA TATATAGCTT GTAACGACCT GTTTAGTCAT TTTGAGCAGC AGATTTTATT 7240 | |||||||||| |||||||| | |||||| ||| |||||||||| .......... .......AAT GTAACGACCT GTTTAGTCGT TTTGAGTAGC AGATTTTATT 199 TCTGGAAAAA TAGGCTGAGG CAACGGATCC CACGACGGAC CGTCATGGGC ACGACGGACC 7180 | |||||||| ||| |||| | ||||| || |||||||||| ||||||| || |||| ||||| TTTGGAAAAA CAGGTTGAGA CGACGGAACC CACGACGGAC CGTCATGAGC ACGATGGACC 259 GTCGCAGGGT CTCGTTTCAA AACACTTAGA AAATCTGAAA TTGGGTACTG AAAATCGACT 7120 |||| | || |||||||||| |||||||||| || ||||||| ||||||||| |||||||||| GTCGAGGAGT CTCGTTTCAA AACACTTAGA AATTCTGAAA TTGGGTACTA AAAATCGACT 319 CTCTGAACTT CGTGACGGAA TGGCAGGACG GACCGTCACA GGCGTGACGG ACCGTCACAG 7060 |||||||||| ||| |||||| ||||| |||| ||||||||| |||||||||| |||||||||| CTCTGAACTT CGTAACGGAA TGGCACGACG GACCGTCACG GGCGTGACGG ACCGTCACAG 379 AGCCTTCAGT GAAAACCCAT TCTCTGAACC TTACGACGAC TTGCAGGACG GACCGTCGTA 7000 | ||| || | ||| | |||||||||| || ||||||| ||||||||| |||||||| | ACTCTTTGGT GGAAATTGAG TCTCTGAACC TTGCGACGAC CTGCAGGACG GACCGTCGCA 439 GGCACGACGG GCCGTCGCAG GCTACGCAAT CCCAGGCTGT GTCGGATTTC TGTTAATTTA 6940 |||||||||| ||| || ||| | | || ||| ||||| ||| |||||||||| | ||| GGCACGACGG GCCATCACAG GTTGCGTAAT CCCAGTCTGG GTCGGATTTC T-TTACACGT 498 TTTAAGGGGC ATTTTGGACT ATTTCCTACT TTAATTATAA AG-TGGTGGG TTAATGTTAA 6881 |||||||| | ||||||||| | |||||||| |||||||||| || | ||||| || ||||||| TTTAAGGGAC GTTTTGGACT A-TTCCTACT TTAATTATAA AGTTAGTGGG TTTATGTTAA 557 TAAGTCTAAT TACTTGGGGG TTAAAAGAGG TAACCTTAAG TTAACTAGTG GG------TT 6827 |||||||||| ||| |||||| |||||||||| ||||||| || | || ||||| || || TAAGTCTAAT TACCTGGGGG TTAAAAGAGG TAACCTTGAG TAAATTAGTG GGTTATTATT 617 --ATCTTTTA TACTTAATTA TATGTTAATT AGGGTAAAAG AAAGAGGGTT GGAATAAGAA 6769 |||||||| | |||||||| |||| ||||| |||||||||| || ||||||| ||||||||| CCATCTTTTA TTCTTAATTA TATGCTAATT AGGGTAAAAG AAGGAGGGTT -GAATAAGAA 676 AAATAAGAAA GAACAAAGAG AGACAGAAAA AGAA 6735 ||| | ||| ||||| | || ||| |||| |||| AAA-GA-AAA GAACAGAAAG AGAGAGAAGG AGAA 708 hqPGS_C06HBa0158P14.1-16-_SGN-E550211- (7282 6735) ******************************************************************************** EST sequence 19 -strand 714 n (File: SGN-E550025-) 1 TTTTTTTTTT TTTTATGAAT TAGCTCAATG AAAAATGAGT AAATTTTTTA TATTTTATGG 61 CATAATTTTT TCATTAATTC ATGGTTGAGA AAATCTTTGT TTCTAATAGT GTTATAAATC 121 GTAAAATAAT AATAATATTT AAGTAGGAAG AACATAAATG TAACGACCTG TTTAGTCGTT 181 TTGAGTAGCA GATTTTATTT TTGGAAAAAC AGGTTGAGAC GACGGAACCC ACGACGGACC 241 GTCATGAGCA CGATGGACCG TCGAGGAGTC TCGTTTCAAA ACACTTAGAA ATTCTGAAAT 301 TGGGTACTAA AAATCGACTC TCTGAACTTC GTAACGGAAT GGCACGACGG ACCGTCACGG 361 GCGTGACGGA CCGTCACAGA CTCTTTGGTG GAAATTGAGT CTCTGAACCT TGCGACGACC 421 TGCAGGACGG ACCGTCGCAG GCACGACGGG CCATCACAGG TTGCGTAATC CCAGTCTGGG 481 TCGGATTTCT TTACACGTTT TAAGGGACGT TTTGGACTAT TCCTACTTTA ATTATAAAGT 541 TAGTGGGTTT ATGTTAATAA GTCTAATTAC CTGGGGGTTA AAAGAGGTAA CCTTGAGTAA 601 ATTAGTGGGT TATTATTCCA TCTTTTATTC TTAATTATAT GCTAATTAGG GTAAAAGAAG 661 GAGGGTTTGA ATAAGAAAAA GAAAAGAACA GAAAGAGAGA GAAGGAGAAT CGAT Predicted gene structure (within gDNA segment 9099 to 5044): Exon 1 9098 9036 ( 63 n); cDNA 76 139 ( 64 n); score: 0.595 Intron 1 9035 8385 ( 651 n); Pd: 0.000 (s: 0.58), Pa: 0.221 (s: 0) Exon 2 8384 8367 ( 18 n); cDNA 140 156 ( 17 n); score: 0.611 Intron 2 8366 7283 (1084 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.90) Exon 3 7282 6735 ( 548 n); cDNA 157 709 ( 553 n); score: 0.839 PPA cDNA 16 1 MATCH C06HBa0158P14.1-16- SGN-E550025- 0.813 629 0.881 C PGS_C06HBa0158P14.1-16-_SGN-E550025- (9098 9036,8384 8367,7282 6735) Alignment (genomic DNA sequence = upper lines): AATTTATAAT TTATAATAT- TTTTTTTATT TAAATTTTTT AATTTAAAAT ATCAAATTAA 9040 |||| || | | | || || ||| ||| | | | || | || | || || | | ||| AATTCATGGT TGAGAAAATC TTTGTTTCTA ATAGTGTTAT AAATCGTAAA ATAATAATAA 135 TATAATCTAT TTTAACTTTA AAAAATAATA AATTTAACTT TCGAAAAATA TAATATAACA 8980 ||| TATT...... .......... .......... .......... .......... .......... 139 ACTAAAAAAA ACCAATGAAA TAACATTCAT TAAAGTTATA GCAGTGTATT TTATTTTACC 8920 .......... .......... .......... .......... .......... .......... 139 TGCTCCTTAT TGTAAAAGCA ATTTATTTTT TTACATTTGT TCATAAAAAA AATAATTTAT 8860 .......... .......... .......... .......... .......... .......... 139 TACTAGTTCT TTTCAACAGT TTATATATCA AATTTAAGAA AAAAGGTAAT GGATCGTTAT 8800 .......... .......... .......... .......... .......... .......... 139 AGAGGCCCCT TTAATTTCAG CCCCCTATTT ATTTATTTTT ACATATGTAT ACATTATACT 8740 .......... .......... .......... .......... .......... .......... 139 CTTTTGTTTT AATGTATATA ATGATGTTTT AATTTTATGA GTCAAATGAG TTACCTTTTA 8680 .......... .......... .......... .......... .......... .......... 139 CTATAATATT TTATATTATT AACTATTGTG ACTTCAATAC TTATTATATA GTTTCAAACA 8620 .......... .......... .......... .......... .......... .......... 139 TATAAATTTT ATTTTTAAAA ATTTATATTT AAGCATACAA TCAAAGTTCA AAAGTTCTTA 8560 .......... .......... .......... .......... .......... .......... 139 TCCCCAAAAG TGAAAAATAA CATATAATTC GATATACAGA GAGTATTTAA ATTTGGGCAA 8500 .......... .......... .......... .......... .......... .......... 139 CTTTCACATA TAGCAAATAA AAAATTCATA TTTGTATGCT ATAGCAAAGT TTGCATAATT 8440 .......... .......... .......... .......... .......... .......... 139 GCGCTCAATA GCAAACATTG AAACTGTATA ATTCGCTATA CATATACATT TGAAGCAAAT 8380 || | .......... .......... .......... .......... .......... .....TAAGT 144 TGTATAAAAC AGAGTGCATA AAACAAGAAA GAGAAAGACA CTTGGGCAGA GAACTGTATA 8320 | | | ||| | | AGGA-AGAAC ATA....... .......... .......... .......... .......... 156 AAAATGATAT GTATAAAACG AATTGTATTA TTATAAGTGT ATAGAATAAT TATATACAAT 8260 .......... .......... .......... .......... .......... .......... 156 TTGAATTTGT ATAAAATGAG AAAGAGAGAA AGACAAAAGA GACTTGACAA GGAATATACA 8200 .......... .......... .......... .......... .......... .......... 156 ATTGAATCGA ATTGTATAAA ATGAGAAAGA GAGAAATTAG ATACAATTTG AAAATTGTAT 8140 .......... .......... .......... .......... .......... .......... 156 AAAATGAGAA AGAGAGAAAG GCAAAAGAAA TTGCGCAGGG GAGTATTTAT TGTATAATTA 8080 .......... .......... .......... .......... .......... .......... 156 TAAGTGTATA GGACGAAAAT ATATGTACTT GCAAGTGTAT ATACAATTTT CTCACGCTTT 8020 .......... .......... .......... .......... .......... .......... 156 ATACAAACAA AAACACAATT TATACACTTC ACTTCTGTTT GTATAAGTGA GAAAGGCGGG 7960 .......... .......... .......... .......... .......... .......... 156 GGTGGCGAGC AAGATTTGGG AGAGTGGCGA GCGAGATCTG GAAGAGGGGA GAGAGGAGAA 7900 .......... .......... .......... .......... .......... .......... 156 CAAAAATATA TGTATTTATA CAATTTTCTC TACTTTATCA ATTATAAACA ATTTTTATAC 7840 .......... .......... .......... .......... .......... .......... 156 ACTTCTGTTT GTATAAAAAG TGAGGAAGCG AACGAGAGAT TAGAGGAGAG TAGCGAGCGA 7780 .......... .......... .......... .......... .......... .......... 156 GATATTTGGG AGAGAGGCGC CTGACAATTT TTTTGCAAAC GTTAGCTATG GAGCACAATT 7720 .......... .......... .......... .......... .......... .......... 156 AAATCAAACC CTAGCTACTC CATTTATTTT AGGTTATTAG TTTGCTATTA TATAAGATTT 7660 .......... .......... .......... .......... .......... .......... 156 TGTCTATATA ATTTTTTTTC ATACTATAGG TAAACTTCTT TGATTGTTAG ATTTAAAATC 7600 .......... .......... .......... .......... .......... .......... 156 TTGAAATAAA ATAGGTACCT TCTACATTAT ATAAATATGA CCCTAATGCT ACAAAATTAT 7540 .......... .......... .......... .......... .......... .......... 156 TTGGCTAAAA AATTATTTGG TCCAATATAT TCCTATTTGT TGAAATGATT TCCCTACTTA 7480 .......... .......... .......... .......... .......... .......... 156 ATAATTGACA CTAGATCTTG CCTTGTGTTA TAATTGAAGA TATATTTGAT ACCACATGCC 7420 .......... .......... .......... .......... .......... .......... 156 TATTTTAATC AAAGTTGTAT TTAAAATTCT GATTCCACGT TCGTTACAGT TAAACTTTTT 7360 .......... .......... .......... .......... .......... .......... 156 TAGTTTATTT TTAAAAAAAA GATAGTTTAT TAAGGATTTT CTTCCCTTCT TCTACCTTGT 7300 .......... .......... .......... .......... .......... .......... 156 TGTCCGATAA TATATAGCTT GTAACGACCT GTTTAGTCAT TTTGAGCAGC AGATTTTATT 7240 | |||||||||| |||||||| | |||||| ||| |||||||||| .......... .......AAT GTAACGACCT GTTTAGTCGT TTTGAGTAGC AGATTTTATT 199 TCTGGAAAAA TAGGCTGAGG CAACGGATCC CACGACGGAC CGTCATGGGC ACGACGGACC 7180 | |||||||| ||| |||| | ||||| || |||||||||| ||||||| || |||| ||||| TTTGGAAAAA CAGGTTGAGA CGACGGAACC CACGACGGAC CGTCATGAGC ACGATGGACC 259 GTCGCAGGGT CTCGTTTCAA AACACTTAGA AAATCTGAAA TTGGGTACTG AAAATCGACT 7120 |||| | || |||||||||| |||||||||| || ||||||| ||||||||| |||||||||| GTCGAGGAGT CTCGTTTCAA AACACTTAGA AATTCTGAAA TTGGGTACTA AAAATCGACT 319 CTCTGAACTT CGTGACGGAA TGGCAGGACG GACCGTCACA GGCGTGACGG ACCGTCACAG 7060 |||||||||| ||| |||||| ||||| |||| ||||||||| |||||||||| |||||||||| CTCTGAACTT CGTAACGGAA TGGCACGACG GACCGTCACG GGCGTGACGG ACCGTCACAG 379 AGCCTTCAGT GAAAACCCAT TCTCTGAACC TTACGACGAC TTGCAGGACG GACCGTCGTA 7000 | ||| || | ||| | |||||||||| || ||||||| ||||||||| |||||||| | ACTCTTTGGT GGAAATTGAG TCTCTGAACC TTGCGACGAC CTGCAGGACG GACCGTCGCA 439 GGCACGACGG GCCGTCGCAG GCTACGCAAT CCCAGGCTGT GTCGGATTTC TGTTAATTTA 6940 |||||||||| ||| || ||| | | || ||| ||||| ||| |||||||||| | ||| GGCACGACGG GCCATCACAG GTTGCGTAAT CCCAGTCTGG GTCGGATTTC T-TTACACGT 498 TTTAAGGGGC ATTTTGGACT ATTTCCTACT TTAATTATAA AG-TGGTGGG TTAATGTTAA 6881 |||||||| | ||||||||| | |||||||| |||||||||| || | ||||| || ||||||| TTTAAGGGAC GTTTTGGACT A-TTCCTACT TTAATTATAA AGTTAGTGGG TTTATGTTAA 557 TAAGTCTAAT TACTTGGGGG TTAAAAGAGG TAACCTTAAG TTAACTAGTG GG------TT 6827 |||||||||| ||| |||||| |||||||||| ||||||| || | || ||||| || || TAAGTCTAAT TACCTGGGGG TTAAAAGAGG TAACCTTGAG TAAATTAGTG GGTTATTATT 617 --ATCTTTTA TACTTAATTA TATGTTAATT AGGGTAAAAG AAAGAGGGTT GGAATAAGAA 6769 |||||||| | |||||||| |||| ||||| |||||||||| || ||||||| ||||||||| CCATCTTTTA TTCTTAATTA TATGCTAATT AGGGTAAAAG AAGGAGGGTT TGAATAAGAA 677 AAATAAGAAA GAACAAAGAG AGACAGAAAA AGAA 6735 ||| | ||| ||||| | || ||| |||| |||| AAA-GA-AAA GAACAGAAAG AGAGAGAAGG AGAA 709 hqPGS_C06HBa0158P14.1-16-_SGN-E550025- (7282 6735) ******************************************************************************** EST sequence 14 -strand 720 n (File: SGN-E389834-) 1 CCCTCGATTT TTTTTTTTTT TTCACGAATA GCTCAATGAA GAACGAGTAA ATTTTTATAT 61 TTCATGGCAT ATTTTTTCAT TAATTCATGG TCGAGAAAAT CTTCGTTTCT AATAGTGTTA 121 TAAATCGTAA AATAATAATG ATATTTAAGT AGGACGATCA TAAATGTAAC GTCCTGTTTA 181 GTCGTTCTGA GTAGCAGATT TTATTTTTGG AAAAACAGGT TGAGTCGACG TAACCCACGA 241 CGGACCGTCA TGAGCACGAT GGACCGTCGA GGAGTCTCGT TTCAAAACAC TTAGAAATTC 301 TGAAATTGGG TACTAAAAAT CGACTCTCTG AACTTCGTAA CGGAATGGCA CGACGGACCG 361 TCACGGGCGT GACGGACCGT CACAGACTCT TTGGTGGAAA TTGAGTCTCT GAACCTTGCG 421 ACGACCTGCA GGACGGACCG TCGCAGGCAC GACGGGCCAT CACAGGTTGC GTAATCCCAG 481 TCTGGGTCGG ATTTCTTTAC ACGTTTTAAG GGACGTTTTG GACTATTCCT ACTTTAATTA 541 TAAAGTTAGT GGGTTTATGT TAATAAGTCT AATTACCTGG GGGTTAAAAG AGGTAACCTT 601 GAGTAAATTA GTGGGTTATT ATTCCATCTT TTATTCTTAA TTATATGCTA ATTAGGGTAA 661 AAGAAGGAGG GTTTGAATAA GAAAAAGAAA AGAACAGAAA GAGAGAGAAG GAGAATCGAT Predicted gene structure (within gDNA segment 9099 to 5044): Exon 1 9099 9073 ( 27 n); cDNA 97 122 ( 26 n); score: 0.667 Intron 1 9072 8368 ( 705 n); Pd: 0.000 (s: 0), Pa: 0.980 (s: 0.56) Exon 2 8367 8325 ( 43 n); cDNA 123 162 ( 40 n); score: 0.558 Intron 2 8324 7283 (1042 n); Pd: 0.799 (s: 0.56), Pa: 0.000 (s: 0.86) Exon 3 7282 6735 ( 548 n); cDNA 163 715 ( 553 n); score: 0.833 PPA cDNA 22 7 MATCH C06HBa0158P14.1-16- SGN-E389834- 0.833 618 0.858 C PGS_C06HBa0158P14.1-16-_SGN-E389834- (9099 9073,8367 8325,7282 6735) Alignment (genomic DNA sequence = upper lines): AAATTTATAA TTTATAATAT TTTTTTTATT TAAATTTTTT AATTTAAAAT ATCAAATTAA 9040 |||| | | ||| ||||| | || | AAATCT-TCG TTTCTAATAG TGTTATA... .......... .......... .......... 122 TATAATCTAT TTTAACTTTA AAAAATAATA AATTTAACTT TCGAAAAATA TAATATAACA 8980 .......... .......... .......... .......... .......... .......... 122 ACTAAAAAAA ACCAATGAAA TAACATTCAT TAAAGTTATA GCAGTGTATT TTATTTTACC 8920 .......... .......... .......... .......... .......... .......... 122 TGCTCCTTAT TGTAAAAGCA ATTTATTTTT TTACATTTGT TCATAAAAAA AATAATTTAT 8860 .......... .......... .......... .......... .......... .......... 122 TACTAGTTCT TTTCAACAGT TTATATATCA AATTTAAGAA AAAAGGTAAT GGATCGTTAT 8800 .......... .......... .......... .......... .......... .......... 122 AGAGGCCCCT TTAATTTCAG CCCCCTATTT ATTTATTTTT ACATATGTAT ACATTATACT 8740 .......... .......... .......... .......... .......... .......... 122 CTTTTGTTTT AATGTATATA ATGATGTTTT AATTTTATGA GTCAAATGAG TTACCTTTTA 8680 .......... .......... .......... .......... .......... .......... 122 CTATAATATT TTATATTATT AACTATTGTG ACTTCAATAC TTATTATATA GTTTCAAACA 8620 .......... .......... .......... .......... .......... .......... 122 TATAAATTTT ATTTTTAAAA ATTTATATTT AAGCATACAA TCAAAGTTCA AAAGTTCTTA 8560 .......... .......... .......... .......... .......... .......... 122 TCCCCAAAAG TGAAAAATAA CATATAATTC GATATACAGA GAGTATTTAA ATTTGGGCAA 8500 .......... .......... .......... .......... .......... .......... 122 CTTTCACATA TAGCAAATAA AAAATTCATA TTTGTATGCT ATAGCAAAGT TTGCATAATT 8440 .......... .......... .......... .......... .......... .......... 122 GCGCTCAATA GCAAACATTG AAACTGTATA ATTCGCTATA CATATACATT TGAAGCAAAT 8380 .......... .......... .......... .......... .......... .......... 122 TGTATAAAAC AGAGTGCATA AAACAAGAAA GAGAAAGACA CTTGGGCAGA GAACTGTATA 8320 | | | || ||| || || || | | | | || | || | .......... ..AAT-CGTA AAATAATAAT GATATTTA-A GTAGGAC-GA TCATA..... 162 AAAATGATAT GTATAAAACG AATTGTATTA TTATAAGTGT ATAGAATAAT TATATACAAT 8260 .......... .......... .......... .......... .......... .......... 162 TTGAATTTGT ATAAAATGAG AAAGAGAGAA AGACAAAAGA GACTTGACAA GGAATATACA 8200 .......... .......... .......... .......... .......... .......... 162 ATTGAATCGA ATTGTATAAA ATGAGAAAGA GAGAAATTAG ATACAATTTG AAAATTGTAT 8140 .......... .......... .......... .......... .......... .......... 162 AAAATGAGAA AGAGAGAAAG GCAAAAGAAA TTGCGCAGGG GAGTATTTAT TGTATAATTA 8080 .......... .......... .......... .......... .......... .......... 162 TAAGTGTATA GGACGAAAAT ATATGTACTT GCAAGTGTAT ATACAATTTT CTCACGCTTT 8020 .......... .......... .......... .......... .......... .......... 162 ATACAAACAA AAACACAATT TATACACTTC ACTTCTGTTT GTATAAGTGA GAAAGGCGGG 7960 .......... .......... .......... .......... .......... .......... 162 GGTGGCGAGC AAGATTTGGG AGAGTGGCGA GCGAGATCTG GAAGAGGGGA GAGAGGAGAA 7900 .......... .......... .......... .......... .......... .......... 162 CAAAAATATA TGTATTTATA CAATTTTCTC TACTTTATCA ATTATAAACA ATTTTTATAC 7840 .......... .......... .......... .......... .......... .......... 162 ACTTCTGTTT GTATAAAAAG TGAGGAAGCG AACGAGAGAT TAGAGGAGAG TAGCGAGCGA 7780 .......... .......... .......... .......... .......... .......... 162 GATATTTGGG AGAGAGGCGC CTGACAATTT TTTTGCAAAC GTTAGCTATG GAGCACAATT 7720 .......... .......... .......... .......... .......... .......... 162 AAATCAAACC CTAGCTACTC CATTTATTTT AGGTTATTAG TTTGCTATTA TATAAGATTT 7660 .......... .......... .......... .......... .......... .......... 162 TGTCTATATA ATTTTTTTTC ATACTATAGG TAAACTTCTT TGATTGTTAG ATTTAAAATC 7600 .......... .......... .......... .......... .......... .......... 162 TTGAAATAAA ATAGGTACCT TCTACATTAT ATAAATATGA CCCTAATGCT ACAAAATTAT 7540 .......... .......... .......... .......... .......... .......... 162 TTGGCTAAAA AATTATTTGG TCCAATATAT TCCTATTTGT TGAAATGATT TCCCTACTTA 7480 .......... .......... .......... .......... .......... .......... 162 ATAATTGACA CTAGATCTTG CCTTGTGTTA TAATTGAAGA TATATTTGAT ACCACATGCC 7420 .......... .......... .......... .......... .......... .......... 162 TATTTTAATC AAAGTTGTAT TTAAAATTCT GATTCCACGT TCGTTACAGT TAAACTTTTT 7360 .......... .......... .......... .......... .......... .......... 162 TAGTTTATTT TTAAAAAAAA GATAGTTTAT TAAGGATTTT CTTCCCTTCT TCTACCTTGT 7300 .......... .......... .......... .......... .......... .......... 162 TGTCCGATAA TATATAGCTT GTAACGACCT GTTTAGTCAT TTTGAGCAGC AGATTTTATT 7240 | |||||| ||| |||||||| | | |||| ||| |||||||||| .......... .......AAT GTAACGTCCT GTTTAGTCGT TCTGAGTAGC AGATTTTATT 205 TCTGGAAAAA TAGGCTGAGG CAACGGATCC CACGACGGAC CGTCATGGGC ACGACGGACC 7180 | |||||||| ||| |||| | ||| | || |||||||||| ||||||| || |||| ||||| TTTGGAAAAA CAGGTTGAGT CGACGTAACC CACGACGGAC CGTCATGAGC ACGATGGACC 265 GTCGCAGGGT CTCGTTTCAA AACACTTAGA AAATCTGAAA TTGGGTACTG AAAATCGACT 7120 |||| | || |||||||||| |||||||||| || ||||||| ||||||||| |||||||||| GTCGAGGAGT CTCGTTTCAA AACACTTAGA AATTCTGAAA TTGGGTACTA AAAATCGACT 325 CTCTGAACTT CGTGACGGAA TGGCAGGACG GACCGTCACA GGCGTGACGG ACCGTCACAG 7060 |||||||||| ||| |||||| ||||| |||| ||||||||| |||||||||| |||||||||| CTCTGAACTT CGTAACGGAA TGGCACGACG GACCGTCACG GGCGTGACGG ACCGTCACAG 385 AGCCTTCAGT GAAAACCCAT TCTCTGAACC TTACGACGAC TTGCAGGACG GACCGTCGTA 7000 | ||| || | ||| | |||||||||| || ||||||| ||||||||| |||||||| | ACTCTTTGGT GGAAATTGAG TCTCTGAACC TTGCGACGAC CTGCAGGACG GACCGTCGCA 445 GGCACGACGG GCCGTCGCAG GCTACGCAAT CCCAGGCTGT GTCGGATTTC TGTTAATTTA 6940 |||||||||| ||| || ||| | | || ||| ||||| ||| |||||||||| | ||| GGCACGACGG GCCATCACAG GTTGCGTAAT CCCAGTCTGG GTCGGATTTC T-TTACACGT 504 TTTAAGGGGC ATTTTGGACT ATTTCCTACT TTAATTATAA AG-TGGTGGG TTAATGTTAA 6881 |||||||| | ||||||||| | |||||||| |||||||||| || | ||||| || ||||||| TTTAAGGGAC GTTTTGGACT A-TTCCTACT TTAATTATAA AGTTAGTGGG TTTATGTTAA 563 TAAGTCTAAT TACTTGGGGG TTAAAAGAGG TAACCTTAAG TTAACTAGTG GG------TT 6827 |||||||||| ||| |||||| |||||||||| ||||||| || | || ||||| || || TAAGTCTAAT TACCTGGGGG TTAAAAGAGG TAACCTTGAG TAAATTAGTG GGTTATTATT 623 --ATCTTTTA TACTTAATTA TATGTTAATT AGGGTAAAAG AAAGAGGGTT GGAATAAGAA 6769 |||||||| | |||||||| |||| ||||| |||||||||| || ||||||| ||||||||| CCATCTTTTA TTCTTAATTA TATGCTAATT AGGGTAAAAG AAGGAGGGTT TGAATAAGAA 683 AAATAAGAAA GAACAAAGAG AGACAGAAAA AGAA 6735 ||| | ||| ||||| | || ||| |||| |||| AAA-GA-AAA GAACAGAAAG AGAGAGAAGG AGAA 715 hqPGS_C06HBa0158P14.1-16-_SGN-E389834- (7282 6735) ******************************************************************************** EST sequence 49 +strand 681 n (File: SGN-E389553+) 1 AATGAGTAAT TTTTTATATT TTATTCCATA ATTTTTTCAT TAATTCATGG TTGAGAAAAT 61 CTTTGTTTCT AATAGTGTTA TAAATCGTAA AATAATAATA ATATTTAAGT AGGAACGAAC 121 ATAAATGTAA CGACCTGTTT AGTCGTTTTG AGTAGCAGAT TTTATTTTTG GAAAAACAGG 181 TTGAGACGAC GGAACCCACG ACGGACCGTC ATGAGCACGA TGGACCGTCG AGGAGTCTCG 241 TTTCAAAACA CTTAGAAATT CTGAAATTGG GTACTAAAAA TCGACTCTCT GAACTTCGTA 301 ACGGAATGGC ACGACGGACC GTCACGGGCG TGACGGACCG TCACAGACTC TTTGGTGGAA 361 ATTGAGTCTC TGAACCTTGC GACGACCTGC AGGACGGACC GTCGCAGGCA CGACGGGCCA 421 TCACAGGTTG CGTAATCCCA GTCTGGGTCG GATTTCTTTA CACGTTTTAA GGGACGTTTT 481 GGACTATTCC TACTTTAATT ATAAAGTTAG TGGGTTTATG TTAATAAGTC TAATTACCTG 541 GGGGTTAAAA GAGGTAACCT TGAGTAAATT AGTGGGTTAT TATTCCATCT TTTATTCTTA 601 ATTATATGCT AATTAGGGTA AAAGAAGGAG GGTTTGAATA AGAAAAAGAA AAGAACAGAA 661 AGAGAGAGAA GGAGAATCGA T Predicted gene structure (within gDNA segment 9099 to 5034): Exon 1 9099 9073 ( 27 n); cDNA 82 108 ( 27 n); score: 0.630 Intron 1 9072 7820 (1253 n); Pd: 0.000 (s: 0), Pa: 0.997 (s: 0) Exon 2 7819 7802 ( 18 n); cDNA 109 125 ( 17 n); score: 0.611 Intron 2 7801 7281 ( 521 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.94) Exon 3 7280 6735 ( 546 n); cDNA 126 676 ( 551 n); score: 0.842 MATCH C06HBa0158P14.1-16- SGN-E389553+ 0.842 591 0.868 C PGS_C06HBa0158P14.1-16-_SGN-E389553+ (9099 9073,7819 7802,7280 6735) Alignment (genomic DNA sequence = upper lines): AAATTTATAA TTTATAATAT TTTTTTTATT TAAATTTTTT AATTTAAAAT ATCAAATTAA 9040 |||| || | |||||| | ||| AAATCGTAAA ATAATAATAA TATTTAA... .......... .......... .......... 108 TATAATCTAT TTTAACTTTA AAAAATAATA AATTTAACTT TCGAAAAATA TAATATAACA 8980 .......... .......... .......... .......... .......... .......... 108 ACTAAAAAAA ACCAATGAAA TAACATTCAT TAAAGTTATA GCAGTGTATT TTATTTTACC 8920 .......... .......... .......... .......... .......... .......... 108 TGCTCCTTAT TGTAAAAGCA ATTTATTTTT TTACATTTGT TCATAAAAAA AATAATTTAT 8860 .......... .......... .......... .......... .......... .......... 108 TACTAGTTCT TTTCAACAGT TTATATATCA AATTTAAGAA AAAAGGTAAT GGATCGTTAT 8800 .......... .......... .......... .......... .......... .......... 108 AGAGGCCCCT TTAATTTCAG CCCCCTATTT ATTTATTTTT ACATATGTAT ACATTATACT 8740 .......... .......... .......... .......... .......... .......... 108 CTTTTGTTTT AATGTATATA ATGATGTTTT AATTTTATGA GTCAAATGAG TTACCTTTTA 8680 .......... .......... .......... .......... .......... .......... 108 CTATAATATT TTATATTATT AACTATTGTG ACTTCAATAC TTATTATATA GTTTCAAACA 8620 .......... .......... .......... .......... .......... .......... 108 TATAAATTTT ATTTTTAAAA ATTTATATTT AAGCATACAA TCAAAGTTCA AAAGTTCTTA 8560 .......... .......... .......... .......... .......... .......... 108 TCCCCAAAAG TGAAAAATAA CATATAATTC GATATACAGA GAGTATTTAA ATTTGGGCAA 8500 .......... .......... .......... .......... .......... .......... 108 CTTTCACATA TAGCAAATAA AAAATTCATA TTTGTATGCT ATAGCAAAGT TTGCATAATT 8440 .......... .......... .......... .......... .......... .......... 108 GCGCTCAATA GCAAACATTG AAACTGTATA ATTCGCTATA CATATACATT TGAAGCAAAT 8380 .......... .......... .......... .......... .......... .......... 108 TGTATAAAAC AGAGTGCATA AAACAAGAAA GAGAAAGACA CTTGGGCAGA GAACTGTATA 8320 .......... .......... .......... .......... .......... .......... 108 AAAATGATAT GTATAAAACG AATTGTATTA TTATAAGTGT ATAGAATAAT TATATACAAT 8260 .......... .......... .......... .......... .......... .......... 108 TTGAATTTGT ATAAAATGAG AAAGAGAGAA AGACAAAAGA GACTTGACAA GGAATATACA 8200 .......... .......... .......... .......... .......... .......... 108 ATTGAATCGA ATTGTATAAA ATGAGAAAGA GAGAAATTAG ATACAATTTG AAAATTGTAT 8140 .......... .......... .......... .......... .......... .......... 108 AAAATGAGAA AGAGAGAAAG GCAAAAGAAA TTGCGCAGGG GAGTATTTAT TGTATAATTA 8080 .......... .......... .......... .......... .......... .......... 108 TAAGTGTATA GGACGAAAAT ATATGTACTT GCAAGTGTAT ATACAATTTT CTCACGCTTT 8020 .......... .......... .......... .......... .......... .......... 108 ATACAAACAA AAACACAATT TATACACTTC ACTTCTGTTT GTATAAGTGA GAAAGGCGGG 7960 .......... .......... .......... .......... .......... .......... 108 GGTGGCGAGC AAGATTTGGG AGAGTGGCGA GCGAGATCTG GAAGAGGGGA GAGAGGAGAA 7900 .......... .......... .......... .......... .......... .......... 108 CAAAAATATA TGTATTTATA CAATTTTCTC TACTTTATCA ATTATAAACA ATTTTTATAC 7840 .......... .......... .......... .......... .......... .......... 108 ACTTCTGTTT GTATAAAAAG TGAGGAAGCG AACGAGAGAT TAGAGGAGAG TAGCGAGCGA 7780 ||||| || ||| | .......... .......... GTAGGAA-CG AACATAAA.. .......... .......... 125 GATATTTGGG AGAGAGGCGC CTGACAATTT TTTTGCAAAC GTTAGCTATG GAGCACAATT 7720 .......... .......... .......... .......... .......... .......... 125 AAATCAAACC CTAGCTACTC CATTTATTTT AGGTTATTAG TTTGCTATTA TATAAGATTT 7660 .......... .......... .......... .......... .......... .......... 125 TGTCTATATA ATTTTTTTTC ATACTATAGG TAAACTTCTT TGATTGTTAG ATTTAAAATC 7600 .......... .......... .......... .......... .......... .......... 125 TTGAAATAAA ATAGGTACCT TCTACATTAT ATAAATATGA CCCTAATGCT ACAAAATTAT 7540 .......... .......... .......... .......... .......... .......... 125 TTGGCTAAAA AATTATTTGG TCCAATATAT TCCTATTTGT TGAAATGATT TCCCTACTTA 7480 .......... .......... .......... .......... .......... .......... 125 ATAATTGACA CTAGATCTTG CCTTGTGTTA TAATTGAAGA TATATTTGAT ACCACATGCC 7420 .......... .......... .......... .......... .......... .......... 125 TATTTTAATC AAAGTTGTAT TTAAAATTCT GATTCCACGT TCGTTACAGT TAAACTTTTT 7360 .......... .......... .......... .......... .......... .......... 125 TAGTTTATTT TTAAAAAAAA GATAGTTTAT TAAGGATTTT CTTCCCTTCT TCTACCTTGT 7300 .......... .......... .......... .......... .......... .......... 125 TGTCCGATAA TATATAGCTT GTAACGACCT GTTTAGTCAT TTTGAGCAGC AGATTTTATT 7240 | |||||||||| |||||||| | |||||| ||| |||||||||| .......... .........T GTAACGACCT GTTTAGTCGT TTTGAGTAGC AGATTTTATT 166 TCTGGAAAAA TAGGCTGAGG CAACGGATCC CACGACGGAC CGTCATGGGC ACGACGGACC 7180 | |||||||| ||| |||| | ||||| || |||||||||| ||||||| || |||| ||||| TTTGGAAAAA CAGGTTGAGA CGACGGAACC CACGACGGAC CGTCATGAGC ACGATGGACC 226 GTCGCAGGGT CTCGTTTCAA AACACTTAGA AAATCTGAAA TTGGGTACTG AAAATCGACT 7120 |||| | || |||||||||| |||||||||| || ||||||| ||||||||| |||||||||| GTCGAGGAGT CTCGTTTCAA AACACTTAGA AATTCTGAAA TTGGGTACTA AAAATCGACT 286 CTCTGAACTT CGTGACGGAA TGGCAGGACG GACCGTCACA GGCGTGACGG ACCGTCACAG 7060 |||||||||| ||| |||||| ||||| |||| ||||||||| |||||||||| |||||||||| CTCTGAACTT CGTAACGGAA TGGCACGACG GACCGTCACG GGCGTGACGG ACCGTCACAG 346 AGCCTTCAGT GAAAACCCAT TCTCTGAACC TTACGACGAC TTGCAGGACG GACCGTCGTA 7000 | ||| || | ||| | |||||||||| || ||||||| ||||||||| |||||||| | ACTCTTTGGT GGAAATTGAG TCTCTGAACC TTGCGACGAC CTGCAGGACG GACCGTCGCA 406 GGCACGACGG GCCGTCGCAG GCTACGCAAT CCCAGGCTGT GTCGGATTTC TGTTAATTTA 6940 |||||||||| ||| || ||| | | || ||| ||||| ||| |||||||||| | ||| GGCACGACGG GCCATCACAG GTTGCGTAAT CCCAGTCTGG GTCGGATTTC T-TTACACGT 465 TTTAAGGGGC ATTTTGGACT ATTTCCTACT TTAATTATAA AG-TGGTGGG TTAATGTTAA 6881 |||||||| | ||||||||| | |||||||| |||||||||| || | ||||| || ||||||| TTTAAGGGAC GTTTTGGACT A-TTCCTACT TTAATTATAA AGTTAGTGGG TTTATGTTAA 524 TAAGTCTAAT TACTTGGGGG TTAAAAGAGG TAACCTTAAG TTAACTAGTG GG------TT 6827 |||||||||| ||| |||||| |||||||||| ||||||| || | || ||||| || || TAAGTCTAAT TACCTGGGGG TTAAAAGAGG TAACCTTGAG TAAATTAGTG GGTTATTATT 584 --ATCTTTTA TACTTAATTA TATGTTAATT AGGGTAAAAG AAAGAGGGTT GGAATAAGAA 6769 |||||||| | |||||||| |||| ||||| |||||||||| || ||||||| ||||||||| CCATCTTTTA TTCTTAATTA TATGCTAATT AGGGTAAAAG AAGGAGGGTT TGAATAAGAA 644 AAATAAGAAA GAACAAAGAG AGACAGAAAA AGAA 6735 ||| | ||| ||||| | || ||| |||| |||| AAA-GA-AAA GAACAGAAAG AGAGAGAAGG AGAA 676 hqPGS_C06HBa0158P14.1-16-_SGN-E389553+ (7280 6735) ******************************************************************************** EST sequence 47 +strand 673 n (File: SGN-E550140+) 1 GTAATTTTTT ATATTTTTGG TCTAATTTTT TGTTAATTCA TGGTTGATAA CATCTTTGTT 61 TCTAATAGTG TTATAAATCG TAAAATAATA ATAATATTTA AGTAGGAAGA ACATAAATGT 121 AACGACCTGT TTAGTCGTTT TGAGTAGCAG ATTTTATTTT TGGAAAAACA GGTTGAGACG 181 ACGGAACCCA CGACGGACCG TCATGAGCAC GATGGACCGT CGAGGAGTCT CGTTTCAAAA 241 CACTTAGAAA TTCTGAAATT GGGTACTAAA AATCGACTCT CTGAACTTCG TAACGGAATG 301 GCACGACGGA CCGTCACGGG CGTGACGGAC CGTCACAGAC TCTTTGGTGG AAATTGAGTC 361 TCTGAACCTT GCGACGACCT GCAGGACGGA CCGTCGCAGG CACGACGGGC CATCACAGGT 421 TGCGTAATCC CAGTCTGGGT CGGATTTCTT TACACGTTTT AAGGGACGTT TTGGACTATT 481 CCTACTTTAA TTATAAAGTT AGTGGGTTTA TGTTAATAAG TCTAATTACC TGGGGGTTAA 541 AAGAGGTAAC CTTNGAGTAA TTAGTGGGTT ATTATTCCAT CTTTTATTCT TAATTATATG 601 CTAATTAGGG TAAAAGAAGG AGGGTTTGAA TAAGAAAAAG AAAAGAACAG AAAGAGAGAG 661 AAGGAGAATC GAT Predicted gene structure (within gDNA segment 9099 to 5034): Exon 1 8367 8358 ( 10 n); cDNA 108 117 ( 10 n); score: 0.800 Intron 1 8357 7281 (1077 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.94) Exon 2 7280 6735 ( 546 n); cDNA 118 668 ( 551 n); score: 0.838 MATCH C06HBa0158P14.1-16- SGN-E550140+ 0.838 556 0.826 C PGS_C06HBa0158P14.1-16-_SGN-E550140+ (8367 8358,7280 6735) Alignment (genomic DNA sequence = upper lines): AGTGCATAAA ACAAGAAAGA GAAAGACACT TGGGCAGAGA ACTGTATAAA AATGATATGT 8308 || |||||| AGAACATAAA .......... .......... .......... .......... .......... 117 ATAAAACGAA TTGTATTATT ATAAGTGTAT AGAATAATTA TATACAATTT GAATTTGTAT 8248 .......... .......... .......... .......... .......... .......... 117 AAAATGAGAA AGAGAGAAAG ACAAAAGAGA CTTGACAAGG AATATACAAT TGAATCGAAT 8188 .......... .......... .......... .......... .......... .......... 117 TGTATAAAAT GAGAAAGAGA GAAATTAGAT ACAATTTGAA AATTGTATAA AATGAGAAAG 8128 .......... .......... .......... .......... .......... .......... 117 AGAGAAAGGC AAAAGAAATT GCGCAGGGGA GTATTTATTG TATAATTATA AGTGTATAGG 8068 .......... .......... .......... .......... .......... .......... 117 ACGAAAATAT ATGTACTTGC AAGTGTATAT ACAATTTTCT CACGCTTTAT ACAAACAAAA 8008 .......... .......... .......... .......... .......... .......... 117 ACACAATTTA TACACTTCAC TTCTGTTTGT ATAAGTGAGA AAGGCGGGGG TGGCGAGCAA 7948 .......... .......... .......... .......... .......... .......... 117 GATTTGGGAG AGTGGCGAGC GAGATCTGGA AGAGGGGAGA GAGGAGAACA AAAATATATG 7888 .......... .......... .......... .......... .......... .......... 117 TATTTATACA ATTTTCTCTA CTTTATCAAT TATAAACAAT TTTTATACAC TTCTGTTTGT 7828 .......... .......... .......... .......... .......... .......... 117 ATAAAAAGTG AGGAAGCGAA CGAGAGATTA GAGGAGAGTA GCGAGCGAGA TATTTGGGAG 7768 .......... .......... .......... .......... .......... .......... 117 AGAGGCGCCT GACAATTTTT TTGCAAACGT TAGCTATGGA GCACAATTAA ATCAAACCCT 7708 .......... .......... .......... .......... .......... .......... 117 AGCTACTCCA TTTATTTTAG GTTATTAGTT TGCTATTATA TAAGATTTTG TCTATATAAT 7648 .......... .......... .......... .......... .......... .......... 117 TTTTTTTCAT ACTATAGGTA AACTTCTTTG ATTGTTAGAT TTAAAATCTT GAAATAAAAT 7588 .......... .......... .......... .......... .......... .......... 117 AGGTACCTTC TACATTATAT AAATATGACC CTAATGCTAC AAAATTATTT GGCTAAAAAA 7528 .......... .......... .......... .......... .......... .......... 117 TTATTTGGTC CAATATATTC CTATTTGTTG AAATGATTTC CCTACTTAAT AATTGACACT 7468 .......... .......... .......... .......... .......... .......... 117 AGATCTTGCC TTGTGTTATA ATTGAAGATA TATTTGATAC CACATGCCTA TTTTAATCAA 7408 .......... .......... .......... .......... .......... .......... 117 AGTTGTATTT AAAATTCTGA TTCCACGTTC GTTACAGTTA AACTTTTTTA GTTTATTTTT 7348 .......... .......... .......... .......... .......... .......... 117 AAAAAAAAGA TAGTTTATTA AGGATTTTCT TCCCTTCTTC TACCTTGTTG TCCGATAATA 7288 .......... .......... .......... .......... .......... .......... 117 TATAGCTTGT AACGACCTGT TTAGTCATTT TGAGCAGCAG ATTTTATTTC TGGAAAAATA 7228 ||| |||||||||| |||||| ||| |||| ||||| ||||||||| |||||||| | .......TGT AACGACCTGT TTAGTCGTTT TGAGTAGCAG ATTTTATTTT TGGAAAAACA 170 GGCTGAGGCA ACGGATCCCA CGACGGACCG TCATGGGCAC GACGGACCGT CGCAGGGTCT 7168 || |||| | ||||| |||| |||||||||| ||||| |||| || ||||||| || | |||| GGTTGAGACG ACGGAACCCA CGACGGACCG TCATGAGCAC GATGGACCGT CGAGGAGTCT 230 CGTTTCAAAA CACTTAGAAA ATCTGAAATT GGGTACTGAA AATCGACTCT CTGAACTTCG 7108 |||||||||| |||||||||| ||||||||| ||||||| || |||||||||| |||||||||| CGTTTCAAAA CACTTAGAAA TTCTGAAATT GGGTACTAAA AATCGACTCT CTGAACTTCG 290 TGACGGAATG GCAGGACGGA CCGTCACAGG CGTGACGGAC CGTCACAGAG CCTTCAGTGA 7048 | |||||||| ||| |||||| ||||||| || |||||||||| ||||||||| ||| ||| TAACGGAATG GCACGACGGA CCGTCACGGG CGTGACGGAC CGTCACAGAC TCTTTGGTGG 350 AAACCCATTC TCTGAACCTT ACGACGACTT GCAGGACGGA CCGTCGTAGG CACGACGGGC 6988 ||| | || |||||||||| ||||||| | |||||||||| |||||| ||| |||||||||| AAATTGAGTC TCTGAACCTT GCGACGACCT GCAGGACGGA CCGTCGCAGG CACGACGGGC 410 CGTCGCAGGC TACGCAATCC CAGGCTGTGT CGGATTTCTG TTAATTTATT TAAGGGGCAT 6928 | || |||| | || ||||| ||| ||| || ||||||||| ||| || |||||| | | CATCACAGGT TGCGTAATCC CAGTCTGGGT CGGATTTCT- TTACACGTTT TAAGGGACGT 469 TTTGGACTAT TTCCTACTTT AATTATAAAG -TGGTGGGTT AATGTTAATA AGTCTAATTA 6869 ||||||||| |||||||||| |||||||||| | ||||||| ||||||||| |||||||||| TTTGGACTA- TTCCTACTTT AATTATAAAG TTAGTGGGTT TATGTTAATA AGTCTAATTA 528 CTTGGGGGTT AAAAGAGGTA ACCTTAAGTT AACTAGTGGG ------TT-- ATCTTTTATA 6817 | |||||||| |||||||||| ||||| | || ||||||| || ||||||||| CCTGGGGGTT AAAAGAGGTA ACCTTNGAGT AATTAGTGGG TTATTATTCC ATCTTTTATT 588 CTTAATTATA TGTTAATTAG GGTAAAAGAA AGAGGGTTGG AATAAGAAAA ATAAGAAAGA 6757 |||||||||| || ||||||| |||||||||| ||||||| | |||||||||| | | ||||| CTTAATTATA TGCTAATTAG GGTAAAAGAA GGAGGGTTTG AATAAGAAAA A-GA-AAAGA 646 ACAAAGAGAG ACAGAAAAAG AA 6735 ||| | |||| | |||| || || ACAGAAAGAG AGAGAAGGAG AA 668 hqPGS_C06HBa0158P14.1-16-_SGN-E550140+ (7280 6735) ******************************************************************************** EST sequence 5 -strand 710 n (File: SGN-E550065-) 1 TTTTTTTCTT ATGAATCAGC TCAATGAAAA ATGAGTAAAT TTTTTATATT TCATGGCATA 61 ATTTTTTCAT TAATTCATGG TTGAGAAAAT CTTTGTTTCT AATAGTGTTA TAAATCGTAA 121 AATAATAATA ATATTTAAGT AGGAAGAACA TAAATGTAAC GACCTGTTTA GTCGTTTTGA 181 GTAGCAGATT TTATTTTTGG AAAAACAGGT TGAGACGACG GAACCCACGA CGGACCGTCA 241 TGAGCACGAT GGACCGTCGA GGAGTCTCGT TTCAAAACAC TTAGAAATTC TGAAATTGGG 301 TACTAAAAAT CGACTCTCTG AACTTCGTAA CGGAATGGCA CGACGGACCG TCACGGGCGT 361 GACGGACCGT CACAGACTCT TTGGTGGAAA TTGAGTCTCT GAACCTTGCG ACGACCTGCA 421 GGACGGACCG TCGCAGGCAC GACGGGCCAT CACAGGTTGC GTAATCCCAG TCTGGGTCGG 481 ATTTCTTTAC ACGTTTTAAG GGACGTTTTG GACTATTCCT ACTTTAATTA TAAAGTTAGT 541 GGGTTTATGT TAATAAGTCT AATTACCTGG GGGTTAAAAG AGGTAACCTT GAGTAAATTA 601 GTGGGTTATT ATTCCATCTT TTATTCTTAA TTATATGCTA ATTAGGGTAA AAGAAGGAGG 661 GTTTGAATAA GAAAAAGAAA AGAACAGAAA GAGAGAGAAG GAGAATCGAT Predicted gene structure (within gDNA segment 9099 to 5044): Exon 1 9099 9072 ( 28 n); cDNA 87 113 ( 27 n); score: 0.679 Intron 1 9071 9027 ( 45 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.67) Exon 2 9026 8986 ( 41 n); cDNA 114 154 ( 41 n); score: 0.671 Intron 2 8985 7281 (1705 n); Pd: 0.000 (s: 0.67), Pa: 0.000 (s: 0.94) Exon 3 7280 6735 ( 546 n); cDNA 155 705 ( 551 n); score: 0.842 MATCH C06HBa0158P14.1-16- SGN-E550065- 0.842 615 0.866 C PGS_C06HBa0158P14.1-16-_SGN-E550065- (9099 9072,9026 8986,7280 6735) Alignment (genomic DNA sequence = upper lines): AAATTTATAA TTTATAATAT TTTTTTTATT TAAATTTTTT AATTTAAAAT ATCAAATTAA 9040 |||| | | ||| ||||| | || | | AAATCT-TTG TTTCTAATAG TGTTATAA.. .......... .......... .......... 113 TATAATCTAT TTTAACTTTA AAAAATAATA A-ATTTAACT TTCGAAAAAT ATAATATAAC 8981 | | | | || ||||||| | |||||| | ||| || |||| .......... ...ATCGTAA AATAATAATA ATATTTAA-G TAGGAAGAAC ATAAA..... 154 AACTAAAAAA AACCAATGAA ATAACATTCA TTAAAGTTAT AGCAGTGTAT TTTATTTTAC 8921 .......... .......... .......... .......... .......... .......... 154 CTGCTCCTTA TTGTAAAAGC AATTTATTTT TTTACATTTG TTCATAAAAA AAATAATTTA 8861 .......... .......... .......... .......... .......... .......... 154 TTACTAGTTC TTTTCAACAG TTTATATATC AAATTTAAGA AAAAAGGTAA TGGATCGTTA 8801 .......... .......... .......... .......... .......... .......... 154 TAGAGGCCCC TTTAATTTCA GCCCCCTATT TATTTATTTT TACATATGTA TACATTATAC 8741 .......... .......... .......... .......... .......... .......... 154 TCTTTTGTTT TAATGTATAT AATGATGTTT TAATTTTATG AGTCAAATGA GTTACCTTTT 8681 .......... .......... .......... .......... .......... .......... 154 ACTATAATAT TTTATATTAT TAACTATTGT GACTTCAATA CTTATTATAT AGTTTCAAAC 8621 .......... .......... .......... .......... .......... .......... 154 ATATAAATTT TATTTTTAAA AATTTATATT TAAGCATACA ATCAAAGTTC AAAAGTTCTT 8561 .......... .......... .......... .......... .......... .......... 154 ATCCCCAAAA GTGAAAAATA ACATATAATT CGATATACAG AGAGTATTTA AATTTGGGCA 8501 .......... .......... .......... .......... .......... .......... 154 ACTTTCACAT ATAGCAAATA AAAAATTCAT ATTTGTATGC TATAGCAAAG TTTGCATAAT 8441 .......... .......... .......... .......... .......... .......... 154 TGCGCTCAAT AGCAAACATT GAAACTGTAT AATTCGCTAT ACATATACAT TTGAAGCAAA 8381 .......... .......... .......... .......... .......... .......... 154 TTGTATAAAA CAGAGTGCAT AAAACAAGAA AGAGAAAGAC ACTTGGGCAG AGAACTGTAT 8321 .......... .......... .......... .......... .......... .......... 154 AAAAATGATA TGTATAAAAC GAATTGTATT ATTATAAGTG TATAGAATAA TTATATACAA 8261 .......... .......... .......... .......... .......... .......... 154 TTTGAATTTG TATAAAATGA GAAAGAGAGA AAGACAAAAG AGACTTGACA AGGAATATAC 8201 .......... .......... .......... .......... .......... .......... 154 AATTGAATCG AATTGTATAA AATGAGAAAG AGAGAAATTA GATACAATTT GAAAATTGTA 8141 .......... .......... .......... .......... .......... .......... 154 TAAAATGAGA AAGAGAGAAA GGCAAAAGAA ATTGCGCAGG GGAGTATTTA TTGTATAATT 8081 .......... .......... .......... .......... .......... .......... 154 ATAAGTGTAT AGGACGAAAA TATATGTACT TGCAAGTGTA TATACAATTT TCTCACGCTT 8021 .......... .......... .......... .......... .......... .......... 154 TATACAAACA AAAACACAAT TTATACACTT CACTTCTGTT TGTATAAGTG AGAAAGGCGG 7961 .......... .......... .......... .......... .......... .......... 154 GGGTGGCGAG CAAGATTTGG GAGAGTGGCG AGCGAGATCT GGAAGAGGGG AGAGAGGAGA 7901 .......... .......... .......... .......... .......... .......... 154 ACAAAAATAT ATGTATTTAT ACAATTTTCT CTACTTTATC AATTATAAAC AATTTTTATA 7841 .......... .......... .......... .......... .......... .......... 154 CACTTCTGTT TGTATAAAAA GTGAGGAAGC GAACGAGAGA TTAGAGGAGA GTAGCGAGCG 7781 .......... .......... .......... .......... .......... .......... 154 AGATATTTGG GAGAGAGGCG CCTGACAATT TTTTTGCAAA CGTTAGCTAT GGAGCACAAT 7721 .......... .......... .......... .......... .......... .......... 154 TAAATCAAAC CCTAGCTACT CCATTTATTT TAGGTTATTA GTTTGCTATT ATATAAGATT 7661 .......... .......... .......... .......... .......... .......... 154 TTGTCTATAT AATTTTTTTT CATACTATAG GTAAACTTCT TTGATTGTTA GATTTAAAAT 7601 .......... .......... .......... .......... .......... .......... 154 CTTGAAATAA AATAGGTACC TTCTACATTA TATAAATATG ACCCTAATGC TACAAAATTA 7541 .......... .......... .......... .......... .......... .......... 154 TTTGGCTAAA AAATTATTTG GTCCAATATA TTCCTATTTG TTGAAATGAT TTCCCTACTT 7481 .......... .......... .......... .......... .......... .......... 154 AATAATTGAC ACTAGATCTT GCCTTGTGTT ATAATTGAAG ATATATTTGA TACCACATGC 7421 .......... .......... .......... .......... .......... .......... 154 CTATTTTAAT CAAAGTTGTA TTTAAAATTC TGATTCCACG TTCGTTACAG TTAAACTTTT 7361 .......... .......... .......... .......... .......... .......... 154 TTAGTTTATT TTTAAAAAAA AGATAGTTTA TTAAGGATTT TCTTCCCTTC TTCTACCTTG 7301 .......... .......... .......... .......... .......... .......... 154 TTGTCCGATA ATATATAGCT TGTAACGACC TGTTTAGTCA TTTTGAGCAG CAGATTTTAT 7241 |||||||||| ||||||||| ||||||| || |||||||||| .......... .......... TGTAACGACC TGTTTAGTCG TTTTGAGTAG CAGATTTTAT 194 TTCTGGAAAA ATAGGCTGAG GCAACGGATC CCACGACGGA CCGTCATGGG CACGACGGAC 7181 || ||||||| | ||| |||| | ||||| | |||||||||| |||||||| | ||||| |||| TTTTGGAAAA ACAGGTTGAG ACGACGGAAC CCACGACGGA CCGTCATGAG CACGATGGAC 254 CGTCGCAGGG TCTCGTTTCA AAACACTTAG AAAATCTGAA ATTGGGTACT GAAAATCGAC 7121 ||||| | | |||||||||| |||||||||| ||| |||||| |||||||||| ||||||||| CGTCGAGGAG TCTCGTTTCA AAACACTTAG AAATTCTGAA ATTGGGTACT AAAAATCGAC 314 TCTCTGAACT TCGTGACGGA ATGGCAGGAC GGACCGTCAC AGGCGTGACG GACCGTCACA 7061 |||||||||| |||| ||||| |||||| ||| |||||||||| ||||||||| |||||||||| TCTCTGAACT TCGTAACGGA ATGGCACGAC GGACCGTCAC GGGCGTGACG GACCGTCACA 374 GAGCCTTCAG TGAAAACCCA TTCTCTGAAC CTTACGACGA CTTGCAGGAC GGACCGTCGT 7001 || ||| | || ||| | ||||||||| ||| |||||| | |||||||| ||||||||| GACTCTTTGG TGGAAATTGA GTCTCTGAAC CTTGCGACGA CCTGCAGGAC GGACCGTCGC 434 AGGCACGACG GGCCGTCGCA GGCTACGCAA TCCCAGGCTG TGTCGGATTT CTGTTAATTT 6941 |||||||||| |||| || || || | || || |||||| ||| ||||||||| || ||| AGGCACGACG GGCCATCACA GGTTGCGTAA TCCCAGTCTG GGTCGGATTT CT-TTACACG 493 ATTTAAGGGG CATTTTGGAC TATTTCCTAC TTTAATTATA AAG-TGGTGG GTTAATGTTA 6882 |||||||| | |||||||| || ||||||| |||||||||| ||| | |||| ||| |||||| TTTTAAGGGA CGTTTTGGAC TA-TTCCTAC TTTAATTATA AAGTTAGTGG GTTTATGTTA 552 ATAAGTCTAA TTACTTGGGG GTTAAAAGAG GTAACCTTAA GTTAACTAGT GGG------T 6828 |||||||||| |||| ||||| |||||||||| |||||||| | || || |||| ||| | ATAAGTCTAA TTACCTGGGG GTTAAAAGAG GTAACCTTGA GTAAATTAGT GGGTTATTAT 612 T--ATCTTTT ATACTTAATT ATATGTTAAT TAGGGTAAAA GAAAGAGGGT TGGAATAAGA 6770 | ||||||| || ||||||| ||||| |||| |||||||||| ||| |||||| | |||||||| TCCATCTTTT ATTCTTAATT ATATGCTAAT TAGGGTAAAA GAAGGAGGGT TTGAATAAGA 672 AAAATAAGAA AGAACAAAGA GAGACAGAAA AAGAA 6735 |||| | || |||||| | | |||| |||| |||| AAAA-GA-AA AGAACAGAAA GAGAGAGAAG GAGAA 705 hqPGS_C06HBa0158P14.1-16-_SGN-E550065- (7280 6735) ******************************************************************************** EST sequence 28 -strand 711 n (File: SGN-E396039-) 1 TTTTTTTTTT TGAATTAGCT CCAAGAAAAA ATGAGTAAAT TTTTTTTATT TTTATGGCAT 61 AATTTTTTCA TTAATTCATG GTGGAGAAAA TCTTTGTTTT TAATAGTGTT ATAAATCGTA 121 AAATAATAAT AATATTTAAG TAGGAAGAAC ATAAATGTAA CGACCTGTTT AGTCGTTTTG 181 AGTAGCAGAT TTTATTTTTG GAAAAACAGG TTGAGACGAC GGAACCCACG ACGGACCGTC 241 ATGAGCACGA TGGACCGTCG AGGAGTCTCG TTTCAAAACA CTTAGAAATT CTGAAATTGG 301 GTACTAAAAA TCGACTCTCT GAACTTCGTA ACGGAATGGC ACGACGGACC GTCACGGGCG 361 TGACGGACCG TCACAGACTC TTTGGTGGAA ATTGAGTCTC TGAACCTTGC GACGACCTGC 421 AGGACGGACC GTCGCAGGCA CGACGGGCCA TCACAGGTTG CGTAATCCCA GTCTGGGTCG 481 GATTTCTTTA CACGTTTTAA GGGACGTTTT GGACTATTCC TACTTTAATT ATAAAGTTAG 541 TGGGTTTATG TTAATAAGTC TAATTACCTG GGGGTTAAAA GAGGTAACCT TGAGTAAATT 601 AGTGGGTTAT TATTCCATCT TTTATTCTTA ATTATATGCT AATTAGGGTA AAAGAAGGAG 661 GGTTTGAATA AGAAAAAGAA AAGAACAGAA AGAGAGAGAA GGAGAATCGA T Predicted gene structure (within gDNA segment 9099 to 5044): Exon 1 9099 9072 ( 28 n); cDNA 88 114 ( 27 n); score: 0.679 Intron 1 9071 9027 ( 45 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.67) Exon 2 9026 8986 ( 41 n); cDNA 115 155 ( 41 n); score: 0.671 Intron 2 8985 7281 (1705 n); Pd: 0.000 (s: 0.67), Pa: 0.000 (s: 0.94) Exon 3 7280 6735 ( 546 n); cDNA 156 706 ( 551 n); score: 0.842 PPA cDNA 50 40 MATCH C06HBa0158P14.1-16- SGN-E396039- 0.842 615 0.865 C PGS_C06HBa0158P14.1-16-_SGN-E396039- (9099 9072,9026 8986,7280 6735) Alignment (genomic DNA sequence = upper lines): AAATTTATAA TTTATAATAT TTTTTTTATT TAAATTTTTT AATTTAAAAT ATCAAATTAA 9040 |||| | | ||| ||||| | || | | AAATCT-TTG TTTTTAATAG TGTTATAA.. .......... .......... .......... 114 TATAATCTAT TTTAACTTTA AAAAATAATA A-ATTTAACT TTCGAAAAAT ATAATATAAC 8981 | | | | || ||||||| | |||||| | ||| || |||| .......... ...ATCGTAA AATAATAATA ATATTTAA-G TAGGAAGAAC ATAAA..... 155 AACTAAAAAA AACCAATGAA ATAACATTCA TTAAAGTTAT AGCAGTGTAT TTTATTTTAC 8921 .......... .......... .......... .......... .......... .......... 155 CTGCTCCTTA TTGTAAAAGC AATTTATTTT TTTACATTTG TTCATAAAAA AAATAATTTA 8861 .......... .......... .......... .......... .......... .......... 155 TTACTAGTTC TTTTCAACAG TTTATATATC AAATTTAAGA AAAAAGGTAA TGGATCGTTA 8801 .......... .......... .......... .......... .......... .......... 155 TAGAGGCCCC TTTAATTTCA GCCCCCTATT TATTTATTTT TACATATGTA TACATTATAC 8741 .......... .......... .......... .......... .......... .......... 155 TCTTTTGTTT TAATGTATAT AATGATGTTT TAATTTTATG AGTCAAATGA GTTACCTTTT 8681 .......... .......... .......... .......... .......... .......... 155 ACTATAATAT TTTATATTAT TAACTATTGT GACTTCAATA CTTATTATAT AGTTTCAAAC 8621 .......... .......... .......... .......... .......... .......... 155 ATATAAATTT TATTTTTAAA AATTTATATT TAAGCATACA ATCAAAGTTC AAAAGTTCTT 8561 .......... .......... .......... .......... .......... .......... 155 ATCCCCAAAA GTGAAAAATA ACATATAATT CGATATACAG AGAGTATTTA AATTTGGGCA 8501 .......... .......... .......... .......... .......... .......... 155 ACTTTCACAT ATAGCAAATA AAAAATTCAT ATTTGTATGC TATAGCAAAG TTTGCATAAT 8441 .......... .......... .......... .......... .......... .......... 155 TGCGCTCAAT AGCAAACATT GAAACTGTAT AATTCGCTAT ACATATACAT TTGAAGCAAA 8381 .......... .......... .......... .......... .......... .......... 155 TTGTATAAAA CAGAGTGCAT AAAACAAGAA AGAGAAAGAC ACTTGGGCAG AGAACTGTAT 8321 .......... .......... .......... .......... .......... .......... 155 AAAAATGATA TGTATAAAAC GAATTGTATT ATTATAAGTG TATAGAATAA TTATATACAA 8261 .......... .......... .......... .......... .......... .......... 155 TTTGAATTTG TATAAAATGA GAAAGAGAGA AAGACAAAAG AGACTTGACA AGGAATATAC 8201 .......... .......... .......... .......... .......... .......... 155 AATTGAATCG AATTGTATAA AATGAGAAAG AGAGAAATTA GATACAATTT GAAAATTGTA 8141 .......... .......... .......... .......... .......... .......... 155 TAAAATGAGA AAGAGAGAAA GGCAAAAGAA ATTGCGCAGG GGAGTATTTA TTGTATAATT 8081 .......... .......... .......... .......... .......... .......... 155 ATAAGTGTAT AGGACGAAAA TATATGTACT TGCAAGTGTA TATACAATTT TCTCACGCTT 8021 .......... .......... .......... .......... .......... .......... 155 TATACAAACA AAAACACAAT TTATACACTT CACTTCTGTT TGTATAAGTG AGAAAGGCGG 7961 .......... .......... .......... .......... .......... .......... 155 GGGTGGCGAG CAAGATTTGG GAGAGTGGCG AGCGAGATCT GGAAGAGGGG AGAGAGGAGA 7901 .......... .......... .......... .......... .......... .......... 155 ACAAAAATAT ATGTATTTAT ACAATTTTCT CTACTTTATC AATTATAAAC AATTTTTATA 7841 .......... .......... .......... .......... .......... .......... 155 CACTTCTGTT TGTATAAAAA GTGAGGAAGC GAACGAGAGA TTAGAGGAGA GTAGCGAGCG 7781 .......... .......... .......... .......... .......... .......... 155 AGATATTTGG GAGAGAGGCG CCTGACAATT TTTTTGCAAA CGTTAGCTAT GGAGCACAAT 7721 .......... .......... .......... .......... .......... .......... 155 TAAATCAAAC CCTAGCTACT CCATTTATTT TAGGTTATTA GTTTGCTATT ATATAAGATT 7661 .......... .......... .......... .......... .......... .......... 155 TTGTCTATAT AATTTTTTTT CATACTATAG GTAAACTTCT TTGATTGTTA GATTTAAAAT 7601 .......... .......... .......... .......... .......... .......... 155 CTTGAAATAA AATAGGTACC TTCTACATTA TATAAATATG ACCCTAATGC TACAAAATTA 7541 .......... .......... .......... .......... .......... .......... 155 TTTGGCTAAA AAATTATTTG GTCCAATATA TTCCTATTTG TTGAAATGAT TTCCCTACTT 7481 .......... .......... .......... .......... .......... .......... 155 AATAATTGAC ACTAGATCTT GCCTTGTGTT ATAATTGAAG ATATATTTGA TACCACATGC 7421 .......... .......... .......... .......... .......... .......... 155 CTATTTTAAT CAAAGTTGTA TTTAAAATTC TGATTCCACG TTCGTTACAG TTAAACTTTT 7361 .......... .......... .......... .......... .......... .......... 155 TTAGTTTATT TTTAAAAAAA AGATAGTTTA TTAAGGATTT TCTTCCCTTC TTCTACCTTG 7301 .......... .......... .......... .......... .......... .......... 155 TTGTCCGATA ATATATAGCT TGTAACGACC TGTTTAGTCA TTTTGAGCAG CAGATTTTAT 7241 |||||||||| ||||||||| ||||||| || |||||||||| .......... .......... TGTAACGACC TGTTTAGTCG TTTTGAGTAG CAGATTTTAT 195 TTCTGGAAAA ATAGGCTGAG GCAACGGATC CCACGACGGA CCGTCATGGG CACGACGGAC 7181 || ||||||| | ||| |||| | ||||| | |||||||||| |||||||| | ||||| |||| TTTTGGAAAA ACAGGTTGAG ACGACGGAAC CCACGACGGA CCGTCATGAG CACGATGGAC 255 CGTCGCAGGG TCTCGTTTCA AAACACTTAG AAAATCTGAA ATTGGGTACT GAAAATCGAC 7121 ||||| | | |||||||||| |||||||||| ||| |||||| |||||||||| ||||||||| CGTCGAGGAG TCTCGTTTCA AAACACTTAG AAATTCTGAA ATTGGGTACT AAAAATCGAC 315 TCTCTGAACT TCGTGACGGA ATGGCAGGAC GGACCGTCAC AGGCGTGACG GACCGTCACA 7061 |||||||||| |||| ||||| |||||| ||| |||||||||| ||||||||| |||||||||| TCTCTGAACT TCGTAACGGA ATGGCACGAC GGACCGTCAC GGGCGTGACG GACCGTCACA 375 GAGCCTTCAG TGAAAACCCA TTCTCTGAAC CTTACGACGA CTTGCAGGAC GGACCGTCGT 7001 || ||| | || ||| | ||||||||| ||| |||||| | |||||||| ||||||||| GACTCTTTGG TGGAAATTGA GTCTCTGAAC CTTGCGACGA CCTGCAGGAC GGACCGTCGC 435 AGGCACGACG GGCCGTCGCA GGCTACGCAA TCCCAGGCTG TGTCGGATTT CTGTTAATTT 6941 |||||||||| |||| || || || | || || |||||| ||| ||||||||| || ||| AGGCACGACG GGCCATCACA GGTTGCGTAA TCCCAGTCTG GGTCGGATTT CT-TTACACG 494 ATTTAAGGGG CATTTTGGAC TATTTCCTAC TTTAATTATA AAG-TGGTGG GTTAATGTTA 6882 |||||||| | |||||||| || ||||||| |||||||||| ||| | |||| ||| |||||| TTTTAAGGGA CGTTTTGGAC TA-TTCCTAC TTTAATTATA AAGTTAGTGG GTTTATGTTA 553 ATAAGTCTAA TTACTTGGGG GTTAAAAGAG GTAACCTTAA GTTAACTAGT GGG------T 6828 |||||||||| |||| ||||| |||||||||| |||||||| | || || |||| ||| | ATAAGTCTAA TTACCTGGGG GTTAAAAGAG GTAACCTTGA GTAAATTAGT GGGTTATTAT 613 T--ATCTTTT ATACTTAATT ATATGTTAAT TAGGGTAAAA GAAAGAGGGT TGGAATAAGA 6770 | ||||||| || ||||||| ||||| |||| |||||||||| ||| |||||| | |||||||| TCCATCTTTT ATTCTTAATT ATATGCTAAT TAGGGTAAAA GAAGGAGGGT TTGAATAAGA 673 AAAATAAGAA AGAACAAAGA GAGACAGAAA AAGAA 6735 |||| | || |||||| | | |||| |||| |||| AAAA-GA-AA AGAACAGAAA GAGAGAGAAG GAGAA 706 hqPGS_C06HBa0158P14.1-16-_SGN-E396039- (7280 6735) ******************************************************************************** EST sequence 13 -strand 714 n (File: SGN-E390013-) 1 TTTTTTTTTT TTTTATGAAT TAGCTCAATG AAAAATGAGT AAATTTTTTA TATTTTATGG 61 CATAATTTTT TCATTAATTC ATGGTTGAGA AAATCTTNGT TTCTAATAGT GTTATAAATC 121 GTAAAATAAT AATAATATTT AAGTAGGAAG AACATAAATG TAACGACCTG TTTAGTCGTT 181 TTGAGTAGCA GATTTTATTT TTGGAAAAAC AGGTTGAGAC GACGGAACCC ACGACGGACC 241 GTCATGAGCA CGATGGACCG TCGAGGAGTC TCGTTTCAAA ACACTTAGAA ATTCTGAAAT 301 TGGGTACTAA AAATCGACTC TCTGAACTTC GTAACGGAAT GGCACGACGG ACCGTCACGG 361 GCGTGACGGA CCGTCACAGA CTCTTTGGTG GAAATTGAGT CTCTGAACCT TGCGACGACC 421 TGCAGGACGG ACCGTCGCAG GCACGACGGG CCATCACAGG TTGCGTAATC CCAGTCTGGG 481 TCGGATTTCT TTACACGTTT TAAGGGACGT TTTGGACTAT TCCTACTTTA ATTATAAAGT 541 TAGTGGGTTT ATGTTAATAA GTCTAATTAC CTGGGGGTTA AAAGAGGTAA CCTTGAGTAA 601 ATTAGTGGGT TATTATTCCA TCTTTTATTC TTAATTATAT GCTAATTAGG GTAAAAGAAG 661 GAGGGTTTGA ATAAGAAAAA GAAAAGAACA GAAAGAGAGA GAAGGAGAAT CGAT Predicted gene structure (within gDNA segment 9099 to 5044): Exon 1 9099 9072 ( 28 n); cDNA 91 117 ( 27 n); score: 0.679 Intron 1 9071 9027 ( 45 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.67) Exon 2 9026 8986 ( 41 n); cDNA 118 158 ( 41 n); score: 0.671 Intron 2 8985 7281 (1705 n); Pd: 0.000 (s: 0.67), Pa: 0.000 (s: 0.94) Exon 3 7280 6735 ( 546 n); cDNA 159 709 ( 551 n); score: 0.842 PPA cDNA 16 1 MATCH C06HBa0158P14.1-16- SGN-E390013- 0.842 615 0.861 C PGS_C06HBa0158P14.1-16-_SGN-E390013- (9099 9072,9026 8986,7280 6735) Alignment (genomic DNA sequence = upper lines): AAATTTATAA TTTATAATAT TTTTTTTATT TAAATTTTTT AATTTAAAAT ATCAAATTAA 9040 |||| | | ||| ||||| | || | | AAATCT-TNG TTTCTAATAG TGTTATAA.. .......... .......... .......... 117 TATAATCTAT TTTAACTTTA AAAAATAATA A-ATTTAACT TTCGAAAAAT ATAATATAAC 8981 | | | | || ||||||| | |||||| | ||| || |||| .......... ...ATCGTAA AATAATAATA ATATTTAA-G TAGGAAGAAC ATAAA..... 158 AACTAAAAAA AACCAATGAA ATAACATTCA TTAAAGTTAT AGCAGTGTAT TTTATTTTAC 8921 .......... .......... .......... .......... .......... .......... 158 CTGCTCCTTA TTGTAAAAGC AATTTATTTT TTTACATTTG TTCATAAAAA AAATAATTTA 8861 .......... .......... .......... .......... .......... .......... 158 TTACTAGTTC TTTTCAACAG TTTATATATC AAATTTAAGA AAAAAGGTAA TGGATCGTTA 8801 .......... .......... .......... .......... .......... .......... 158 TAGAGGCCCC TTTAATTTCA GCCCCCTATT TATTTATTTT TACATATGTA TACATTATAC 8741 .......... .......... .......... .......... .......... .......... 158 TCTTTTGTTT TAATGTATAT AATGATGTTT TAATTTTATG AGTCAAATGA GTTACCTTTT 8681 .......... .......... .......... .......... .......... .......... 158 ACTATAATAT TTTATATTAT TAACTATTGT GACTTCAATA CTTATTATAT AGTTTCAAAC 8621 .......... .......... .......... .......... .......... .......... 158 ATATAAATTT TATTTTTAAA AATTTATATT TAAGCATACA ATCAAAGTTC AAAAGTTCTT 8561 .......... .......... .......... .......... .......... .......... 158 ATCCCCAAAA GTGAAAAATA ACATATAATT CGATATACAG AGAGTATTTA AATTTGGGCA 8501 .......... .......... .......... .......... .......... .......... 158 ACTTTCACAT ATAGCAAATA AAAAATTCAT ATTTGTATGC TATAGCAAAG TTTGCATAAT 8441 .......... .......... .......... .......... .......... .......... 158 TGCGCTCAAT AGCAAACATT GAAACTGTAT AATTCGCTAT ACATATACAT TTGAAGCAAA 8381 .......... .......... .......... .......... .......... .......... 158 TTGTATAAAA CAGAGTGCAT AAAACAAGAA AGAGAAAGAC ACTTGGGCAG AGAACTGTAT 8321 .......... .......... .......... .......... .......... .......... 158 AAAAATGATA TGTATAAAAC GAATTGTATT ATTATAAGTG TATAGAATAA TTATATACAA 8261 .......... .......... .......... .......... .......... .......... 158 TTTGAATTTG TATAAAATGA GAAAGAGAGA AAGACAAAAG AGACTTGACA AGGAATATAC 8201 .......... .......... .......... .......... .......... .......... 158 AATTGAATCG AATTGTATAA AATGAGAAAG AGAGAAATTA GATACAATTT GAAAATTGTA 8141 .......... .......... .......... .......... .......... .......... 158 TAAAATGAGA AAGAGAGAAA GGCAAAAGAA ATTGCGCAGG GGAGTATTTA TTGTATAATT 8081 .......... .......... .......... .......... .......... .......... 158 ATAAGTGTAT AGGACGAAAA TATATGTACT TGCAAGTGTA TATACAATTT TCTCACGCTT 8021 .......... .......... .......... .......... .......... .......... 158 TATACAAACA AAAACACAAT TTATACACTT CACTTCTGTT TGTATAAGTG AGAAAGGCGG 7961 .......... .......... .......... .......... .......... .......... 158 GGGTGGCGAG CAAGATTTGG GAGAGTGGCG AGCGAGATCT GGAAGAGGGG AGAGAGGAGA 7901 .......... .......... .......... .......... .......... .......... 158 ACAAAAATAT ATGTATTTAT ACAATTTTCT CTACTTTATC AATTATAAAC AATTTTTATA 7841 .......... .......... .......... .......... .......... .......... 158 CACTTCTGTT TGTATAAAAA GTGAGGAAGC GAACGAGAGA TTAGAGGAGA GTAGCGAGCG 7781 .......... .......... .......... .......... .......... .......... 158 AGATATTTGG GAGAGAGGCG CCTGACAATT TTTTTGCAAA CGTTAGCTAT GGAGCACAAT 7721 .......... .......... .......... .......... .......... .......... 158 TAAATCAAAC CCTAGCTACT CCATTTATTT TAGGTTATTA GTTTGCTATT ATATAAGATT 7661 .......... .......... .......... .......... .......... .......... 158 TTGTCTATAT AATTTTTTTT CATACTATAG GTAAACTTCT TTGATTGTTA GATTTAAAAT 7601 .......... .......... .......... .......... .......... .......... 158 CTTGAAATAA AATAGGTACC TTCTACATTA TATAAATATG ACCCTAATGC TACAAAATTA 7541 .......... .......... .......... .......... .......... .......... 158 TTTGGCTAAA AAATTATTTG GTCCAATATA TTCCTATTTG TTGAAATGAT TTCCCTACTT 7481 .......... .......... .......... .......... .......... .......... 158 AATAATTGAC ACTAGATCTT GCCTTGTGTT ATAATTGAAG ATATATTTGA TACCACATGC 7421 .......... .......... .......... .......... .......... .......... 158 CTATTTTAAT CAAAGTTGTA TTTAAAATTC TGATTCCACG TTCGTTACAG TTAAACTTTT 7361 .......... .......... .......... .......... .......... .......... 158 TTAGTTTATT TTTAAAAAAA AGATAGTTTA TTAAGGATTT TCTTCCCTTC TTCTACCTTG 7301 .......... .......... .......... .......... .......... .......... 158 TTGTCCGATA ATATATAGCT TGTAACGACC TGTTTAGTCA TTTTGAGCAG CAGATTTTAT 7241 |||||||||| ||||||||| ||||||| || |||||||||| .......... .......... TGTAACGACC TGTTTAGTCG TTTTGAGTAG CAGATTTTAT 198 TTCTGGAAAA ATAGGCTGAG GCAACGGATC CCACGACGGA CCGTCATGGG CACGACGGAC 7181 || ||||||| | ||| |||| | ||||| | |||||||||| |||||||| | ||||| |||| TTTTGGAAAA ACAGGTTGAG ACGACGGAAC CCACGACGGA CCGTCATGAG CACGATGGAC 258 CGTCGCAGGG TCTCGTTTCA AAACACTTAG AAAATCTGAA ATTGGGTACT GAAAATCGAC 7121 ||||| | | |||||||||| |||||||||| ||| |||||| |||||||||| ||||||||| CGTCGAGGAG TCTCGTTTCA AAACACTTAG AAATTCTGAA ATTGGGTACT AAAAATCGAC 318 TCTCTGAACT TCGTGACGGA ATGGCAGGAC GGACCGTCAC AGGCGTGACG GACCGTCACA 7061 |||||||||| |||| ||||| |||||| ||| |||||||||| ||||||||| |||||||||| TCTCTGAACT TCGTAACGGA ATGGCACGAC GGACCGTCAC GGGCGTGACG GACCGTCACA 378 GAGCCTTCAG TGAAAACCCA TTCTCTGAAC CTTACGACGA CTTGCAGGAC GGACCGTCGT 7001 || ||| | || ||| | ||||||||| ||| |||||| | |||||||| ||||||||| GACTCTTTGG TGGAAATTGA GTCTCTGAAC CTTGCGACGA CCTGCAGGAC GGACCGTCGC 438 AGGCACGACG GGCCGTCGCA GGCTACGCAA TCCCAGGCTG TGTCGGATTT CTGTTAATTT 6941 |||||||||| |||| || || || | || || |||||| ||| ||||||||| || ||| AGGCACGACG GGCCATCACA GGTTGCGTAA TCCCAGTCTG GGTCGGATTT CT-TTACACG 497 ATTTAAGGGG CATTTTGGAC TATTTCCTAC TTTAATTATA AAG-TGGTGG GTTAATGTTA 6882 |||||||| | |||||||| || ||||||| |||||||||| ||| | |||| ||| |||||| TTTTAAGGGA CGTTTTGGAC TA-TTCCTAC TTTAATTATA AAGTTAGTGG GTTTATGTTA 556 ATAAGTCTAA TTACTTGGGG GTTAAAAGAG GTAACCTTAA GTTAACTAGT GGG------T 6828 |||||||||| |||| ||||| |||||||||| |||||||| | || || |||| ||| | ATAAGTCTAA TTACCTGGGG GTTAAAAGAG GTAACCTTGA GTAAATTAGT GGGTTATTAT 616 T--ATCTTTT ATACTTAATT ATATGTTAAT TAGGGTAAAA GAAAGAGGGT TGGAATAAGA 6770 | ||||||| || ||||||| ||||| |||| |||||||||| ||| |||||| | |||||||| TCCATCTTTT ATTCTTAATT ATATGCTAAT TAGGGTAAAA GAAGGAGGGT TTGAATAAGA 676 AAAATAAGAA AGAACAAAGA GAGACAGAAA AAGAA 6735 |||| | || |||||| | | |||| |||| |||| AAAA-GA-AA AGAACAGAAA GAGAGAGAAG GAGAA 709 hqPGS_C06HBa0158P14.1-16-_SGN-E390013- (7280 6735) ******************************************************************************** EST sequence 8 -strand 709 n (File: SGN-E550207-) 1 TTTTTTTTTA TGAATTAGCT CAATGAAAAA TGAGTAAATT TTTTATATTT TATGGCATAA 61 TTTTTTCATT AATTCATGGT GNAGAAAATC TTTGTTTCTA ATAGTGTTAT AAATCGTAAA 121 ATAATAATAA TATTTAAGTA GGAAGAACAT AAATGTAACG ACCTGTTTAG TCGTTTTGAG 181 TAGCAGATTT TATTTTTGGA AAAACAGGTT GAGACGACGG AACCCACGAC GGACCGTCAT 241 GAGCACGATG GACCGTCGAG GAGTCTCGTT TCAAAACACT TAGAAATTCT GAAATTGGGT 301 ACTAAAAATC GACTCTCTGA ACTTCGTAAC GGAATGGCAC GACGGACCGT CACGGGCGTG 361 ACGGACCGTC ACAGACTCTT TGGTGGAAAT TGAGTCTCTG AACCTTGCGA CGACCTGCAG 421 GACGGACCGT CGCAGGCACG ACGGGCCATC ACAGGTTGCG TAATCCCAGT CTGGGTCGGA 481 TTTCTTTACA CGTTTTAAGG GACGTTTTGG ACTATTCCTA CTTTAATTAT AAAGTTAGTG 541 GGTTTATGTT AATAAGTCTA ATTACCTGGG GGTTAAAAGA GGTAACCTTG AGTAAATTAG 601 TGGGTTATTA TTCCATCTTT TATTCTTAAT TATATGCTAA TTAGGGTAAA AGAAGGAGGG 661 TTTGAATAAG AAAAAGAAAA GAACAGAAAG AGAGAGAAGG AGAATCGAT Predicted gene structure (within gDNA segment 9099 to 5044): Exon 1 9099 9072 ( 28 n); cDNA 86 112 ( 27 n); score: 0.679 Intron 1 9071 9027 ( 45 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.67) Exon 2 9026 8986 ( 41 n); cDNA 113 153 ( 41 n); score: 0.671 Intron 2 8985 7281 (1705 n); Pd: 0.000 (s: 0.67), Pa: 0.000 (s: 0.94) Exon 3 7280 6735 ( 546 n); cDNA 154 704 ( 551 n); score: 0.842 PPA cDNA 11 1 MATCH C06HBa0158P14.1-16- SGN-E550207- 0.842 615 0.867 C PGS_C06HBa0158P14.1-16-_SGN-E550207- (9099 9072,9026 8986,7280 6735) Alignment (genomic DNA sequence = upper lines): AAATTTATAA TTTATAATAT TTTTTTTATT TAAATTTTTT AATTTAAAAT ATCAAATTAA 9040 |||| | | ||| ||||| | || | | AAATCT-TTG TTTCTAATAG TGTTATAA.. .......... .......... .......... 112 TATAATCTAT TTTAACTTTA AAAAATAATA A-ATTTAACT TTCGAAAAAT ATAATATAAC 8981 | | | | || ||||||| | |||||| | ||| || |||| .......... ...ATCGTAA AATAATAATA ATATTTAA-G TAGGAAGAAC ATAAA..... 153 AACTAAAAAA AACCAATGAA ATAACATTCA TTAAAGTTAT AGCAGTGTAT TTTATTTTAC 8921 .......... .......... .......... .......... .......... .......... 153 CTGCTCCTTA TTGTAAAAGC AATTTATTTT TTTACATTTG TTCATAAAAA AAATAATTTA 8861 .......... .......... .......... .......... .......... .......... 153 TTACTAGTTC TTTTCAACAG TTTATATATC AAATTTAAGA AAAAAGGTAA TGGATCGTTA 8801 .......... .......... .......... .......... .......... .......... 153 TAGAGGCCCC TTTAATTTCA GCCCCCTATT TATTTATTTT TACATATGTA TACATTATAC 8741 .......... .......... .......... .......... .......... .......... 153 TCTTTTGTTT TAATGTATAT AATGATGTTT TAATTTTATG AGTCAAATGA GTTACCTTTT 8681 .......... .......... .......... .......... .......... .......... 153 ACTATAATAT TTTATATTAT TAACTATTGT GACTTCAATA CTTATTATAT AGTTTCAAAC 8621 .......... .......... .......... .......... .......... .......... 153 ATATAAATTT TATTTTTAAA AATTTATATT TAAGCATACA ATCAAAGTTC AAAAGTTCTT 8561 .......... .......... .......... .......... .......... .......... 153 ATCCCCAAAA GTGAAAAATA ACATATAATT CGATATACAG AGAGTATTTA AATTTGGGCA 8501 .......... .......... .......... .......... .......... .......... 153 ACTTTCACAT ATAGCAAATA AAAAATTCAT ATTTGTATGC TATAGCAAAG TTTGCATAAT 8441 .......... .......... .......... .......... .......... .......... 153 TGCGCTCAAT AGCAAACATT GAAACTGTAT AATTCGCTAT ACATATACAT TTGAAGCAAA 8381 .......... .......... .......... .......... .......... .......... 153 TTGTATAAAA CAGAGTGCAT AAAACAAGAA AGAGAAAGAC ACTTGGGCAG AGAACTGTAT 8321 .......... .......... .......... .......... .......... .......... 153 AAAAATGATA TGTATAAAAC GAATTGTATT ATTATAAGTG TATAGAATAA TTATATACAA 8261 .......... .......... .......... .......... .......... .......... 153 TTTGAATTTG TATAAAATGA GAAAGAGAGA AAGACAAAAG AGACTTGACA AGGAATATAC 8201 .......... .......... .......... .......... .......... .......... 153 AATTGAATCG AATTGTATAA AATGAGAAAG AGAGAAATTA GATACAATTT GAAAATTGTA 8141 .......... .......... .......... .......... .......... .......... 153 TAAAATGAGA AAGAGAGAAA GGCAAAAGAA ATTGCGCAGG GGAGTATTTA TTGTATAATT 8081 .......... .......... .......... .......... .......... .......... 153 ATAAGTGTAT AGGACGAAAA TATATGTACT TGCAAGTGTA TATACAATTT TCTCACGCTT 8021 .......... .......... .......... .......... .......... .......... 153 TATACAAACA AAAACACAAT TTATACACTT CACTTCTGTT TGTATAAGTG AGAAAGGCGG 7961 .......... .......... .......... .......... .......... .......... 153 GGGTGGCGAG CAAGATTTGG GAGAGTGGCG AGCGAGATCT GGAAGAGGGG AGAGAGGAGA 7901 .......... .......... .......... .......... .......... .......... 153 ACAAAAATAT ATGTATTTAT ACAATTTTCT CTACTTTATC AATTATAAAC AATTTTTATA 7841 .......... .......... .......... .......... .......... .......... 153 CACTTCTGTT TGTATAAAAA GTGAGGAAGC GAACGAGAGA TTAGAGGAGA GTAGCGAGCG 7781 .......... .......... .......... .......... .......... .......... 153 AGATATTTGG GAGAGAGGCG CCTGACAATT TTTTTGCAAA CGTTAGCTAT GGAGCACAAT 7721 .......... .......... .......... .......... .......... .......... 153 TAAATCAAAC CCTAGCTACT CCATTTATTT TAGGTTATTA GTTTGCTATT ATATAAGATT 7661 .......... .......... .......... .......... .......... .......... 153 TTGTCTATAT AATTTTTTTT CATACTATAG GTAAACTTCT TTGATTGTTA GATTTAAAAT 7601 .......... .......... .......... .......... .......... .......... 153 CTTGAAATAA AATAGGTACC TTCTACATTA TATAAATATG ACCCTAATGC TACAAAATTA 7541 .......... .......... .......... .......... .......... .......... 153 TTTGGCTAAA AAATTATTTG GTCCAATATA TTCCTATTTG TTGAAATGAT TTCCCTACTT 7481 .......... .......... .......... .......... .......... .......... 153 AATAATTGAC ACTAGATCTT GCCTTGTGTT ATAATTGAAG ATATATTTGA TACCACATGC 7421 .......... .......... .......... .......... .......... .......... 153 CTATTTTAAT CAAAGTTGTA TTTAAAATTC TGATTCCACG TTCGTTACAG TTAAACTTTT 7361 .......... .......... .......... .......... .......... .......... 153 TTAGTTTATT TTTAAAAAAA AGATAGTTTA TTAAGGATTT TCTTCCCTTC TTCTACCTTG 7301 .......... .......... .......... .......... .......... .......... 153 TTGTCCGATA ATATATAGCT TGTAACGACC TGTTTAGTCA TTTTGAGCAG CAGATTTTAT 7241 |||||||||| ||||||||| ||||||| || |||||||||| .......... .......... TGTAACGACC TGTTTAGTCG TTTTGAGTAG CAGATTTTAT 193 TTCTGGAAAA ATAGGCTGAG GCAACGGATC CCACGACGGA CCGTCATGGG CACGACGGAC 7181 || ||||||| | ||| |||| | ||||| | |||||||||| |||||||| | ||||| |||| TTTTGGAAAA ACAGGTTGAG ACGACGGAAC CCACGACGGA CCGTCATGAG CACGATGGAC 253 CGTCGCAGGG TCTCGTTTCA AAACACTTAG AAAATCTGAA ATTGGGTACT GAAAATCGAC 7121 ||||| | | |||||||||| |||||||||| ||| |||||| |||||||||| ||||||||| CGTCGAGGAG TCTCGTTTCA AAACACTTAG AAATTCTGAA ATTGGGTACT AAAAATCGAC 313 TCTCTGAACT TCGTGACGGA ATGGCAGGAC GGACCGTCAC AGGCGTGACG GACCGTCACA 7061 |||||||||| |||| ||||| |||||| ||| |||||||||| ||||||||| |||||||||| TCTCTGAACT TCGTAACGGA ATGGCACGAC GGACCGTCAC GGGCGTGACG GACCGTCACA 373 GAGCCTTCAG TGAAAACCCA TTCTCTGAAC CTTACGACGA CTTGCAGGAC GGACCGTCGT 7001 || ||| | || ||| | ||||||||| ||| |||||| | |||||||| ||||||||| GACTCTTTGG TGGAAATTGA GTCTCTGAAC CTTGCGACGA CCTGCAGGAC GGACCGTCGC 433 AGGCACGACG GGCCGTCGCA GGCTACGCAA TCCCAGGCTG TGTCGGATTT CTGTTAATTT 6941 |||||||||| |||| || || || | || || |||||| ||| ||||||||| || ||| AGGCACGACG GGCCATCACA GGTTGCGTAA TCCCAGTCTG GGTCGGATTT CT-TTACACG 492 ATTTAAGGGG CATTTTGGAC TATTTCCTAC TTTAATTATA AAG-TGGTGG GTTAATGTTA 6882 |||||||| | |||||||| || ||||||| |||||||||| ||| | |||| ||| |||||| TTTTAAGGGA CGTTTTGGAC TA-TTCCTAC TTTAATTATA AAGTTAGTGG GTTTATGTTA 551 ATAAGTCTAA TTACTTGGGG GTTAAAAGAG GTAACCTTAA GTTAACTAGT GGG------T 6828 |||||||||| |||| ||||| |||||||||| |||||||| | || || |||| ||| | ATAAGTCTAA TTACCTGGGG GTTAAAAGAG GTAACCTTGA GTAAATTAGT GGGTTATTAT 611 T--ATCTTTT ATACTTAATT ATATGTTAAT TAGGGTAAAA GAAAGAGGGT TGGAATAAGA 6770 | ||||||| || ||||||| ||||| |||| |||||||||| ||| |||||| | |||||||| TCCATCTTTT ATTCTTAATT ATATGCTAAT TAGGGTAAAA GAAGGAGGGT TTGAATAAGA 671 AAAATAAGAA AGAACAAAGA GAGACAGAAA AAGAA 6735 |||| | || |||||| | | |||| |||| |||| AAAA-GA-AA AGAACAGAAA GAGAGAGAAG GAGAA 704 hqPGS_C06HBa0158P14.1-16-_SGN-E550207- (7280 6735) ******************************************************************************** EST sequence 18 -strand 713 n (File: SGN-E549941-) 1 TTTTTTTTTT TTTATGAATT AGCTCAATGA AAAATGAGTA AATTTTTTAT ATTTTGATGG 61 CATAATTTTT CATTAATCAT NGGTCGAGAA AATCTTTGTT TCTAATAGTG TTATAAATCG 121 TAAAATAATA ATAATATTTA AGTAGGAAGA ACATAAATGT AACGACCTGT TTAGTCGTTT 181 TGAGTAGCAG ATATTATTTT TGGAAAAACA GGTTGAGACG ACGGAACCCA CGACGGACCG 241 TCATGAGCAC GATGGACCGT CGAGGAGTCT CGTTTCAAAA CACTTAGAAA TTCTGAAATT 301 GGGTACTAAA AATCGACTCT CTGAACTTCG TAACGGAATG GCACGACGGA CCGTCACGGG 361 CGTGACGGAC CGTCACAGAC TCTTTGGTGG AAATTGAGTC TCTGAACCTT GCGACGACCT 421 GCAGGACGGA CCGTCGCAGG CACGACGGGC CATCACAGGT TGCGTAATCC CAGTCTGGGT 481 CGGATTTCTT TACACGTTTT AAGGGACGTT TTGGACTATT CCTACTTTAA TTATAAAGTT 541 AGTGGGTTTA TGTTAATAAG TCTAATTACC TGGGGGTTAA AAGAGGTAAC CTTGAGTAAA 601 TTAGTGGGTT ATTATTCCAT CTTTTATTCT TAATTATATG CTAATTAGGG TAAAAGAAGG 661 AGGGTTTGAA TAAGAAAAAG AAAAGAACAG AAAGAGAGAG AAGGAGAATC GAT Predicted gene structure (within gDNA segment 9099 to 5044): Exon 1 9099 9072 ( 28 n); cDNA 90 116 ( 27 n); score: 0.679 Intron 1 9071 9027 ( 45 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.67) Exon 2 9026 8986 ( 41 n); cDNA 117 157 ( 41 n); score: 0.671 Intron 2 8985 7281 (1705 n); Pd: 0.000 (s: 0.67), Pa: 0.000 (s: 0.92) Exon 3 7280 6735 ( 546 n); cDNA 158 708 ( 551 n); score: 0.840 PPA cDNA 15 1 MATCH C06HBa0158P14.1-16- SGN-E549941- 0.840 615 0.863 C PGS_C06HBa0158P14.1-16-_SGN-E549941- (9099 9072,9026 8986,7280 6735) Alignment (genomic DNA sequence = upper lines): AAATTTATAA TTTATAATAT TTTTTTTATT TAAATTTTTT AATTTAAAAT ATCAAATTAA 9040 |||| | | ||| ||||| | || | | AAATCT-TTG TTTCTAATAG TGTTATAA.. .......... .......... .......... 116 TATAATCTAT TTTAACTTTA AAAAATAATA A-ATTTAACT TTCGAAAAAT ATAATATAAC 8981 | | | | || ||||||| | |||||| | ||| || |||| .......... ...ATCGTAA AATAATAATA ATATTTAA-G TAGGAAGAAC ATAAA..... 157 AACTAAAAAA AACCAATGAA ATAACATTCA TTAAAGTTAT AGCAGTGTAT TTTATTTTAC 8921 .......... .......... .......... .......... .......... .......... 157 CTGCTCCTTA TTGTAAAAGC AATTTATTTT TTTACATTTG TTCATAAAAA AAATAATTTA 8861 .......... .......... .......... .......... .......... .......... 157 TTACTAGTTC TTTTCAACAG TTTATATATC AAATTTAAGA AAAAAGGTAA TGGATCGTTA 8801 .......... .......... .......... .......... .......... .......... 157 TAGAGGCCCC TTTAATTTCA GCCCCCTATT TATTTATTTT TACATATGTA TACATTATAC 8741 .......... .......... .......... .......... .......... .......... 157 TCTTTTGTTT TAATGTATAT AATGATGTTT TAATTTTATG AGTCAAATGA GTTACCTTTT 8681 .......... .......... .......... .......... .......... .......... 157 ACTATAATAT TTTATATTAT TAACTATTGT GACTTCAATA CTTATTATAT AGTTTCAAAC 8621 .......... .......... .......... .......... .......... .......... 157 ATATAAATTT TATTTTTAAA AATTTATATT TAAGCATACA ATCAAAGTTC AAAAGTTCTT 8561 .......... .......... .......... .......... .......... .......... 157 ATCCCCAAAA GTGAAAAATA ACATATAATT CGATATACAG AGAGTATTTA AATTTGGGCA 8501 .......... .......... .......... .......... .......... .......... 157 ACTTTCACAT ATAGCAAATA AAAAATTCAT ATTTGTATGC TATAGCAAAG TTTGCATAAT 8441 .......... .......... .......... .......... .......... .......... 157 TGCGCTCAAT AGCAAACATT GAAACTGTAT AATTCGCTAT ACATATACAT TTGAAGCAAA 8381 .......... .......... .......... .......... .......... .......... 157 TTGTATAAAA CAGAGTGCAT AAAACAAGAA AGAGAAAGAC ACTTGGGCAG AGAACTGTAT 8321 .......... .......... .......... .......... .......... .......... 157 AAAAATGATA TGTATAAAAC GAATTGTATT ATTATAAGTG TATAGAATAA TTATATACAA 8261 .......... .......... .......... .......... .......... .......... 157 TTTGAATTTG TATAAAATGA GAAAGAGAGA AAGACAAAAG AGACTTGACA AGGAATATAC 8201 .......... .......... .......... .......... .......... .......... 157 AATTGAATCG AATTGTATAA AATGAGAAAG AGAGAAATTA GATACAATTT GAAAATTGTA 8141 .......... .......... .......... .......... .......... .......... 157 TAAAATGAGA AAGAGAGAAA GGCAAAAGAA ATTGCGCAGG GGAGTATTTA TTGTATAATT 8081 .......... .......... .......... .......... .......... .......... 157 ATAAGTGTAT AGGACGAAAA TATATGTACT TGCAAGTGTA TATACAATTT TCTCACGCTT 8021 .......... .......... .......... .......... .......... .......... 157 TATACAAACA AAAACACAAT TTATACACTT CACTTCTGTT TGTATAAGTG AGAAAGGCGG 7961 .......... .......... .......... .......... .......... .......... 157 GGGTGGCGAG CAAGATTTGG GAGAGTGGCG AGCGAGATCT GGAAGAGGGG AGAGAGGAGA 7901 .......... .......... .......... .......... .......... .......... 157 ACAAAAATAT ATGTATTTAT ACAATTTTCT CTACTTTATC AATTATAAAC AATTTTTATA 7841 .......... .......... .......... .......... .......... .......... 157 CACTTCTGTT TGTATAAAAA GTGAGGAAGC GAACGAGAGA TTAGAGGAGA GTAGCGAGCG 7781 .......... .......... .......... .......... .......... .......... 157 AGATATTTGG GAGAGAGGCG CCTGACAATT TTTTTGCAAA CGTTAGCTAT GGAGCACAAT 7721 .......... .......... .......... .......... .......... .......... 157 TAAATCAAAC CCTAGCTACT CCATTTATTT TAGGTTATTA GTTTGCTATT ATATAAGATT 7661 .......... .......... .......... .......... .......... .......... 157 TTGTCTATAT AATTTTTTTT CATACTATAG GTAAACTTCT TTGATTGTTA GATTTAAAAT 7601 .......... .......... .......... .......... .......... .......... 157 CTTGAAATAA AATAGGTACC TTCTACATTA TATAAATATG ACCCTAATGC TACAAAATTA 7541 .......... .......... .......... .......... .......... .......... 157 TTTGGCTAAA AAATTATTTG GTCCAATATA TTCCTATTTG TTGAAATGAT TTCCCTACTT 7481 .......... .......... .......... .......... .......... .......... 157 AATAATTGAC ACTAGATCTT GCCTTGTGTT ATAATTGAAG ATATATTTGA TACCACATGC 7421 .......... .......... .......... .......... .......... .......... 157 CTATTTTAAT CAAAGTTGTA TTTAAAATTC TGATTCCACG TTCGTTACAG TTAAACTTTT 7361 .......... .......... .......... .......... .......... .......... 157 TTAGTTTATT TTTAAAAAAA AGATAGTTTA TTAAGGATTT TCTTCCCTTC TTCTACCTTG 7301 .......... .......... .......... .......... .......... .......... 157 TTGTCCGATA ATATATAGCT TGTAACGACC TGTTTAGTCA TTTTGAGCAG CAGATTTTAT 7241 |||||||||| ||||||||| ||||||| || ||||| |||| .......... .......... TGTAACGACC TGTTTAGTCG TTTTGAGTAG CAGATATTAT 197 TTCTGGAAAA ATAGGCTGAG GCAACGGATC CCACGACGGA CCGTCATGGG CACGACGGAC 7181 || ||||||| | ||| |||| | ||||| | |||||||||| |||||||| | ||||| |||| TTTTGGAAAA ACAGGTTGAG ACGACGGAAC CCACGACGGA CCGTCATGAG CACGATGGAC 257 CGTCGCAGGG TCTCGTTTCA AAACACTTAG AAAATCTGAA ATTGGGTACT GAAAATCGAC 7121 ||||| | | |||||||||| |||||||||| ||| |||||| |||||||||| ||||||||| CGTCGAGGAG TCTCGTTTCA AAACACTTAG AAATTCTGAA ATTGGGTACT AAAAATCGAC 317 TCTCTGAACT TCGTGACGGA ATGGCAGGAC GGACCGTCAC AGGCGTGACG GACCGTCACA 7061 |||||||||| |||| ||||| |||||| ||| |||||||||| ||||||||| |||||||||| TCTCTGAACT TCGTAACGGA ATGGCACGAC GGACCGTCAC GGGCGTGACG GACCGTCACA 377 GAGCCTTCAG TGAAAACCCA TTCTCTGAAC CTTACGACGA CTTGCAGGAC GGACCGTCGT 7001 || ||| | || ||| | ||||||||| ||| |||||| | |||||||| ||||||||| GACTCTTTGG TGGAAATTGA GTCTCTGAAC CTTGCGACGA CCTGCAGGAC GGACCGTCGC 437 AGGCACGACG GGCCGTCGCA GGCTACGCAA TCCCAGGCTG TGTCGGATTT CTGTTAATTT 6941 |||||||||| |||| || || || | || || |||||| ||| ||||||||| || ||| AGGCACGACG GGCCATCACA GGTTGCGTAA TCCCAGTCTG GGTCGGATTT CT-TTACACG 496 ATTTAAGGGG CATTTTGGAC TATTTCCTAC TTTAATTATA AAG-TGGTGG GTTAATGTTA 6882 |||||||| | |||||||| || ||||||| |||||||||| ||| | |||| ||| |||||| TTTTAAGGGA CGTTTTGGAC TA-TTCCTAC TTTAATTATA AAGTTAGTGG GTTTATGTTA 555 ATAAGTCTAA TTACTTGGGG GTTAAAAGAG GTAACCTTAA GTTAACTAGT GGG------T 6828 |||||||||| |||| ||||| |||||||||| |||||||| | || || |||| ||| | ATAAGTCTAA TTACCTGGGG GTTAAAAGAG GTAACCTTGA GTAAATTAGT GGGTTATTAT 615 T--ATCTTTT ATACTTAATT ATATGTTAAT TAGGGTAAAA GAAAGAGGGT TGGAATAAGA 6770 | ||||||| || ||||||| ||||| |||| |||||||||| ||| |||||| | |||||||| TCCATCTTTT ATTCTTAATT ATATGCTAAT TAGGGTAAAA GAAGGAGGGT TTGAATAAGA 675 AAAATAAGAA AGAACAAAGA GAGACAGAAA AAGAA 6735 |||| | || |||||| | | |||| |||| |||| AAAA-GA-AA AGAACAGAAA GAGAGAGAAG GAGAA 708 hqPGS_C06HBa0158P14.1-16-_SGN-E549941- (7280 6735) ******************************************************************************** EST sequence 34 -strand 690 n (File: SGN-E377133-) 1 CTCAATGAAA AATGAGTAAA TTTTTTATAT TTTATGGCAT AATTTTTTCA TTAATTCATG 61 GTTGAGAAAA TCTTTGTTTC TAATAGTGTT ATAAATCGTA AAATAATAAT AATATTTAAG 121 TAGGAAGAAC ATAAATGTAA CGACCTGTTT AGTCGTTTTG AGTAGCAGAT TTTATTTTTG 181 GAAAAACAGG TTGAGACGAC GGAACCCACG ACGGACCGTC ATGAGCACGA TGGACCGTCG 241 AGGAGTCTCG TTTCAAAACA CTTAGAAATT CTGAAATTGG GTACTAAAAA TCGACTCTCT 301 GAACTTCGTA ACGGAATGGC ACGACGGACC GTCACGGGCG TGACGGACCG TCACAGACTC 361 TTTGGTGGAA ATTGAGTCTC TGAACCTTGC GACGACCTGC AGGACGGACC GTCGCAGGCA 421 CGACGGGCCA TCACAGGTTG CGTAATCCCA GTCTGGGTCG GATTTCTTTA CACGTTTTAA 481 GGGACGTTTT GGACTATTCC TACTTTAATT ATAAAGTTAG TGGGTTTATG TTAATAAGTC 541 TAATTACCTG GGGGTTAAAA GAGGTAACCT TGAGTAAATT AGTGGGTTAT TATTCCATCT 601 TTTATTCTTA ATTATATGCT AATTAGGGTA AAAGAAGGAG GGTTTGAATA AGAAAAAGAA 661 AAGAACAGAA AGAGAGAGAA GGAGAATCGA Predicted gene structure (within gDNA segment 9099 to 5054): Exon 1 8367 8358 ( 10 n); cDNA 126 135 ( 10 n); score: 0.800 Intron 1 8357 7281 (1077 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.94) Exon 2 7280 6735 ( 546 n); cDNA 136 686 ( 551 n); score: 0.842 MATCH C06HBa0158P14.1-16- SGN-E377133- 0.842 556 0.806 C PGS_C06HBa0158P14.1-16-_SGN-E377133- (8367 8358,7280 6735) Alignment (genomic DNA sequence = upper lines): AGTGCATAAA ACAAGAAAGA GAAAGACACT TGGGCAGAGA ACTGTATAAA AATGATATGT 8308 || |||||| AGAACATAAA .......... .......... .......... .......... .......... 135 ATAAAACGAA TTGTATTATT ATAAGTGTAT AGAATAATTA TATACAATTT GAATTTGTAT 8248 .......... .......... .......... .......... .......... .......... 135 AAAATGAGAA AGAGAGAAAG ACAAAAGAGA CTTGACAAGG AATATACAAT TGAATCGAAT 8188 .......... .......... .......... .......... .......... .......... 135 TGTATAAAAT GAGAAAGAGA GAAATTAGAT ACAATTTGAA AATTGTATAA AATGAGAAAG 8128 .......... .......... .......... .......... .......... .......... 135 AGAGAAAGGC AAAAGAAATT GCGCAGGGGA GTATTTATTG TATAATTATA AGTGTATAGG 8068 .......... .......... .......... .......... .......... .......... 135 ACGAAAATAT ATGTACTTGC AAGTGTATAT ACAATTTTCT CACGCTTTAT ACAAACAAAA 8008 .......... .......... .......... .......... .......... .......... 135 ACACAATTTA TACACTTCAC TTCTGTTTGT ATAAGTGAGA AAGGCGGGGG TGGCGAGCAA 7948 .......... .......... .......... .......... .......... .......... 135 GATTTGGGAG AGTGGCGAGC GAGATCTGGA AGAGGGGAGA GAGGAGAACA AAAATATATG 7888 .......... .......... .......... .......... .......... .......... 135 TATTTATACA ATTTTCTCTA CTTTATCAAT TATAAACAAT TTTTATACAC TTCTGTTTGT 7828 .......... .......... .......... .......... .......... .......... 135 ATAAAAAGTG AGGAAGCGAA CGAGAGATTA GAGGAGAGTA GCGAGCGAGA TATTTGGGAG 7768 .......... .......... .......... .......... .......... .......... 135 AGAGGCGCCT GACAATTTTT TTGCAAACGT TAGCTATGGA GCACAATTAA ATCAAACCCT 7708 .......... .......... .......... .......... .......... .......... 135 AGCTACTCCA TTTATTTTAG GTTATTAGTT TGCTATTATA TAAGATTTTG TCTATATAAT 7648 .......... .......... .......... .......... .......... .......... 135 TTTTTTTCAT ACTATAGGTA AACTTCTTTG ATTGTTAGAT TTAAAATCTT GAAATAAAAT 7588 .......... .......... .......... .......... .......... .......... 135 AGGTACCTTC TACATTATAT AAATATGACC CTAATGCTAC AAAATTATTT GGCTAAAAAA 7528 .......... .......... .......... .......... .......... .......... 135 TTATTTGGTC CAATATATTC CTATTTGTTG AAATGATTTC CCTACTTAAT AATTGACACT 7468 .......... .......... .......... .......... .......... .......... 135 AGATCTTGCC TTGTGTTATA ATTGAAGATA TATTTGATAC CACATGCCTA TTTTAATCAA 7408 .......... .......... .......... .......... .......... .......... 135 AGTTGTATTT AAAATTCTGA TTCCACGTTC GTTACAGTTA AACTTTTTTA GTTTATTTTT 7348 .......... .......... .......... .......... .......... .......... 135 AAAAAAAAGA TAGTTTATTA AGGATTTTCT TCCCTTCTTC TACCTTGTTG TCCGATAATA 7288 .......... .......... .......... .......... .......... .......... 135 TATAGCTTGT AACGACCTGT TTAGTCATTT TGAGCAGCAG ATTTTATTTC TGGAAAAATA 7228 ||| |||||||||| |||||| ||| |||| ||||| ||||||||| |||||||| | .......TGT AACGACCTGT TTAGTCGTTT TGAGTAGCAG ATTTTATTTT TGGAAAAACA 188 GGCTGAGGCA ACGGATCCCA CGACGGACCG TCATGGGCAC GACGGACCGT CGCAGGGTCT 7168 || |||| | ||||| |||| |||||||||| ||||| |||| || ||||||| || | |||| GGTTGAGACG ACGGAACCCA CGACGGACCG TCATGAGCAC GATGGACCGT CGAGGAGTCT 248 CGTTTCAAAA CACTTAGAAA ATCTGAAATT GGGTACTGAA AATCGACTCT CTGAACTTCG 7108 |||||||||| |||||||||| ||||||||| ||||||| || |||||||||| |||||||||| CGTTTCAAAA CACTTAGAAA TTCTGAAATT GGGTACTAAA AATCGACTCT CTGAACTTCG 308 TGACGGAATG GCAGGACGGA CCGTCACAGG CGTGACGGAC CGTCACAGAG CCTTCAGTGA 7048 | |||||||| ||| |||||| ||||||| || |||||||||| ||||||||| ||| ||| TAACGGAATG GCACGACGGA CCGTCACGGG CGTGACGGAC CGTCACAGAC TCTTTGGTGG 368 AAACCCATTC TCTGAACCTT ACGACGACTT GCAGGACGGA CCGTCGTAGG CACGACGGGC 6988 ||| | || |||||||||| ||||||| | |||||||||| |||||| ||| |||||||||| AAATTGAGTC TCTGAACCTT GCGACGACCT GCAGGACGGA CCGTCGCAGG CACGACGGGC 428 CGTCGCAGGC TACGCAATCC CAGGCTGTGT CGGATTTCTG TTAATTTATT TAAGGGGCAT 6928 | || |||| | || ||||| ||| ||| || ||||||||| ||| || |||||| | | CATCACAGGT TGCGTAATCC CAGTCTGGGT CGGATTTCT- TTACACGTTT TAAGGGACGT 487 TTTGGACTAT TTCCTACTTT AATTATAAAG -TGGTGGGTT AATGTTAATA AGTCTAATTA 6869 ||||||||| |||||||||| |||||||||| | ||||||| ||||||||| |||||||||| TTTGGACTA- TTCCTACTTT AATTATAAAG TTAGTGGGTT TATGTTAATA AGTCTAATTA 546 CTTGGGGGTT AAAAGAGGTA ACCTTAAGTT AACTAGTGGG ------TT-- ATCTTTTATA 6817 | |||||||| |||||||||| ||||| ||| || ||||||| || ||||||||| CCTGGGGGTT AAAAGAGGTA ACCTTGAGTA AATTAGTGGG TTATTATTCC ATCTTTTATT 606 CTTAATTATA TGTTAATTAG GGTAAAAGAA AGAGGGTTGG AATAAGAAAA ATAAGAAAGA 6757 |||||||||| || ||||||| |||||||||| ||||||| | |||||||||| | | ||||| CTTAATTATA TGCTAATTAG GGTAAAAGAA GGAGGGTTTG AATAAGAAAA A-GA-AAAGA 664 ACAAAGAGAG ACAGAAAAAG AA 6735 ||| | |||| | |||| || || ACAGAAAGAG AGAGAAGGAG AA 686 hqPGS_C06HBa0158P14.1-16-_SGN-E377133- (7280 6735) ******************************************************************************** EST sequence 20 -strand 558 n (File: SGN-E231589-) 1 AAATGTAACG ACCTGTTTAG TCGTTTTGAG TAGCAGATTT TATTTTTGGA AAAACAGGTT 61 GAGACGACGG AACCCACGAC GGACCGTCAT GAGCACGATG GACCGTCGAG GAGTCTCGTT 121 TCAAAACACT TAGAAATTCT GAAATTGGGT ACTAAAAATC GACTCTCTGA ACTTCGTAAC 181 GGAATGGCAC GACGGACCGT CACGGGCGTG ACGGACCGTC ACAGACTCTT TGGTGGAAAT 241 TGAGTCTATG AACCTTGCGA CGACCTGCAG GACGGACCGT CGCAGGCACG ACGGGCCATC 301 ACAGGTTGCG TAATCCCAGT CTGGGTCGGA TTTCTTTACA CGTTTTAAGG GACGTTTTGG 361 ACTATTCCTA CTTTAATTAT AAAGTTAGTG GGTTTATGTT AATAAGTCTA ATTACCTGGG 421 GGTTAAAAGA GGTAACCTTG AGTAAATTAG TGGGTTATTA TTCCATCTTT TATTCTTAAT 481 TATATGCTAA TTAGGGTAAA AGAAGGAGGG TTTGAATAAG AAAAAGAAAA GAACAGAAAG 541 AGAGAGAAGG AGAATCGA Predicted gene structure (within gDNA segment 8901 to 5054): Exon 1 7280 6735 ( 546 n); cDNA 4 554 ( 551 n); score: 0.840 MATCH C06HBa0158P14.1-16- SGN-E231589- 0.840 546 0.978 C PGS_C06HBa0158P14.1-16-_SGN-E231589- (7280 6735) Alignment (genomic DNA sequence = upper lines): TGTAACGACC TGTTTAGTCA TTTTGAGCAG CAGATTTTAT TTCTGGAAAA ATAGGCTGAG 7221 |||||||||| ||||||||| ||||||| || |||||||||| || ||||||| | ||| |||| TGTAACGACC TGTTTAGTCG TTTTGAGTAG CAGATTTTAT TTTTGGAAAA ACAGGTTGAG 63 GCAACGGATC CCACGACGGA CCGTCATGGG CACGACGGAC CGTCGCAGGG TCTCGTTTCA 7161 | ||||| | |||||||||| |||||||| | ||||| |||| ||||| | | |||||||||| ACGACGGAAC CCACGACGGA CCGTCATGAG CACGATGGAC CGTCGAGGAG TCTCGTTTCA 123 AAACACTTAG AAAATCTGAA ATTGGGTACT GAAAATCGAC TCTCTGAACT TCGTGACGGA 7101 |||||||||| ||| |||||| |||||||||| ||||||||| |||||||||| |||| ||||| AAACACTTAG AAATTCTGAA ATTGGGTACT AAAAATCGAC TCTCTGAACT TCGTAACGGA 183 ATGGCAGGAC GGACCGTCAC AGGCGTGACG GACCGTCACA GAGCCTTCAG TGAAAACCCA 7041 |||||| ||| |||||||||| ||||||||| |||||||||| || ||| | || ||| | ATGGCACGAC GGACCGTCAC GGGCGTGACG GACCGTCACA GACTCTTTGG TGGAAATTGA 243 TTCTCTGAAC CTTACGACGA CTTGCAGGAC GGACCGTCGT AGGCACGACG GGCCGTCGCA 6981 ||| ||||| ||| |||||| | |||||||| ||||||||| |||||||||| |||| || || GTCTATGAAC CTTGCGACGA CCTGCAGGAC GGACCGTCGC AGGCACGACG GGCCATCACA 303 GGCTACGCAA TCCCAGGCTG TGTCGGATTT CTGTTAATTT ATTTAAGGGG CATTTTGGAC 6921 || | || || |||||| ||| ||||||||| || ||| |||||||| | |||||||| GGTTGCGTAA TCCCAGTCTG GGTCGGATTT CT-TTACACG TTTTAAGGGA CGTTTTGGAC 362 TATTTCCTAC TTTAATTATA AAG-TGGTGG GTTAATGTTA ATAAGTCTAA TTACTTGGGG 6862 || ||||||| |||||||||| ||| | |||| ||| |||||| |||||||||| |||| ||||| TA-TTCCTAC TTTAATTATA AAGTTAGTGG GTTTATGTTA ATAAGTCTAA TTACCTGGGG 421 GTTAAAAGAG GTAACCTTAA GTTAACTAGT GGG------T T--ATCTTTT ATACTTAATT 6810 |||||||||| |||||||| | || || |||| ||| | | ||||||| || ||||||| GTTAAAAGAG GTAACCTTGA GTAAATTAGT GGGTTATTAT TCCATCTTTT ATTCTTAATT 481 ATATGTTAAT TAGGGTAAAA GAAAGAGGGT TGGAATAAGA AAAATAAGAA AGAACAAAGA 6750 ||||| |||| |||||||||| ||| |||||| | |||||||| |||| | || |||||| | | ATATGCTAAT TAGGGTAAAA GAAGGAGGGT TTGAATAAGA AAAA-GA-AA AGAACAGAAA 539 GAGACAGAAA AAGAA 6735 |||| |||| |||| GAGAGAGAAG GAGAA 554 hqPGS_C06HBa0158P14.1-16-_SGN-E231589- (7280 6735) ******************************************************************************** EST sequence 26 -strand 649 n (File: SGN-E374999-) 1 ATTTTTTCAT TAATTCAGGG TGAAGAAAAT CTTTGTTTCT AATAGTGTTA TAAATCGTAA 61 AATAATAATA ATATTTAAGT AGGAAGAACA TAAATGTAAC GACCTGTTTA GTCGTTTGGA 121 GTAGCAGATT TTATTTTTGG AAAAACAGGT TGAGACGACG GAACCCACGA CGGACCGTCA 181 TGAGCACGAT GGACCGTCGA GGAGTCTCGT TTCAAAACAC TTAGAAATTC TGAAATTGGG 241 TACTAAAAAT CGACTCTCTG AACTTCGTAA CGGAATGGCA CGACGGACCG TCACGGGCGT 301 GACGGACCGT CACAGACTCT TTGGTGGAAA TTGAGTCTCT GAACCTTGCG ACGACCTGCA 361 GGACGGACCG TCGCAGGCAC GACGGGCCAT CACAGGTTGC GTAATCCCAG TCTGGGTCGG 421 ATTTCTTTAC ACGTTTTAAG GGACGTTTTG GACTATTCCT ACTTTAATTA TAAAGTTAGT 481 GGGTTTATGT TAATAAGTCT AATTACCTGG GGGTTAAAAG AGGTAACCTT GAGTAAATTA 541 GTGGGTTATT ATTCCATCTT TTATTCTTAA TTATATGCTA ATTAGGGTAA AAGAAGGAGG 601 GTTTGAATAA GAAAAAGAAA AGAACAGAAA GAGAGAGAAG GAGAATCGA Predicted gene structure (within gDNA segment 9099 to 5054): Exon 1 8367 8358 ( 10 n); cDNA 85 94 ( 10 n); score: 0.800 Intron 1 8357 7281 (1077 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.92) Exon 2 7280 6735 ( 546 n); cDNA 95 645 ( 551 n); score: 0.840 MATCH C06HBa0158P14.1-16- SGN-E374999- 0.840 556 0.857 C PGS_C06HBa0158P14.1-16-_SGN-E374999- (8367 8358,7280 6735) Alignment (genomic DNA sequence = upper lines): AGTGCATAAA ACAAGAAAGA GAAAGACACT TGGGCAGAGA ACTGTATAAA AATGATATGT 8308 || |||||| AGAACATAAA .......... .......... .......... .......... .......... 94 ATAAAACGAA TTGTATTATT ATAAGTGTAT AGAATAATTA TATACAATTT GAATTTGTAT 8248 .......... .......... .......... .......... .......... .......... 94 AAAATGAGAA AGAGAGAAAG ACAAAAGAGA CTTGACAAGG AATATACAAT TGAATCGAAT 8188 .......... .......... .......... .......... .......... .......... 94 TGTATAAAAT GAGAAAGAGA GAAATTAGAT ACAATTTGAA AATTGTATAA AATGAGAAAG 8128 .......... .......... .......... .......... .......... .......... 94 AGAGAAAGGC AAAAGAAATT GCGCAGGGGA GTATTTATTG TATAATTATA AGTGTATAGG 8068 .......... .......... .......... .......... .......... .......... 94 ACGAAAATAT ATGTACTTGC AAGTGTATAT ACAATTTTCT CACGCTTTAT ACAAACAAAA 8008 .......... .......... .......... .......... .......... .......... 94 ACACAATTTA TACACTTCAC TTCTGTTTGT ATAAGTGAGA AAGGCGGGGG TGGCGAGCAA 7948 .......... .......... .......... .......... .......... .......... 94 GATTTGGGAG AGTGGCGAGC GAGATCTGGA AGAGGGGAGA GAGGAGAACA AAAATATATG 7888 .......... .......... .......... .......... .......... .......... 94 TATTTATACA ATTTTCTCTA CTTTATCAAT TATAAACAAT TTTTATACAC TTCTGTTTGT 7828 .......... .......... .......... .......... .......... .......... 94 ATAAAAAGTG AGGAAGCGAA CGAGAGATTA GAGGAGAGTA GCGAGCGAGA TATTTGGGAG 7768 .......... .......... .......... .......... .......... .......... 94 AGAGGCGCCT GACAATTTTT TTGCAAACGT TAGCTATGGA GCACAATTAA ATCAAACCCT 7708 .......... .......... .......... .......... .......... .......... 94 AGCTACTCCA TTTATTTTAG GTTATTAGTT TGCTATTATA TAAGATTTTG TCTATATAAT 7648 .......... .......... .......... .......... .......... .......... 94 TTTTTTTCAT ACTATAGGTA AACTTCTTTG ATTGTTAGAT TTAAAATCTT GAAATAAAAT 7588 .......... .......... .......... .......... .......... .......... 94 AGGTACCTTC TACATTATAT AAATATGACC CTAATGCTAC AAAATTATTT GGCTAAAAAA 7528 .......... .......... .......... .......... .......... .......... 94 TTATTTGGTC CAATATATTC CTATTTGTTG AAATGATTTC CCTACTTAAT AATTGACACT 7468 .......... .......... .......... .......... .......... .......... 94 AGATCTTGCC TTGTGTTATA ATTGAAGATA TATTTGATAC CACATGCCTA TTTTAATCAA 7408 .......... .......... .......... .......... .......... .......... 94 AGTTGTATTT AAAATTCTGA TTCCACGTTC GTTACAGTTA AACTTTTTTA GTTTATTTTT 7348 .......... .......... .......... .......... .......... .......... 94 AAAAAAAAGA TAGTTTATTA AGGATTTTCT TCCCTTCTTC TACCTTGTTG TCCGATAATA 7288 .......... .......... .......... .......... .......... .......... 94 TATAGCTTGT AACGACCTGT TTAGTCATTT TGAGCAGCAG ATTTTATTTC TGGAAAAATA 7228 ||| |||||||||| |||||| ||| ||| ||||| ||||||||| |||||||| | .......TGT AACGACCTGT TTAGTCGTTT GGAGTAGCAG ATTTTATTTT TGGAAAAACA 147 GGCTGAGGCA ACGGATCCCA CGACGGACCG TCATGGGCAC GACGGACCGT CGCAGGGTCT 7168 || |||| | ||||| |||| |||||||||| ||||| |||| || ||||||| || | |||| GGTTGAGACG ACGGAACCCA CGACGGACCG TCATGAGCAC GATGGACCGT CGAGGAGTCT 207 CGTTTCAAAA CACTTAGAAA ATCTGAAATT GGGTACTGAA AATCGACTCT CTGAACTTCG 7108 |||||||||| |||||||||| ||||||||| ||||||| || |||||||||| |||||||||| CGTTTCAAAA CACTTAGAAA TTCTGAAATT GGGTACTAAA AATCGACTCT CTGAACTTCG 267 TGACGGAATG GCAGGACGGA CCGTCACAGG CGTGACGGAC CGTCACAGAG CCTTCAGTGA 7048 | |||||||| ||| |||||| ||||||| || |||||||||| ||||||||| ||| ||| TAACGGAATG GCACGACGGA CCGTCACGGG CGTGACGGAC CGTCACAGAC TCTTTGGTGG 327 AAACCCATTC TCTGAACCTT ACGACGACTT GCAGGACGGA CCGTCGTAGG CACGACGGGC 6988 ||| | || |||||||||| ||||||| | |||||||||| |||||| ||| |||||||||| AAATTGAGTC TCTGAACCTT GCGACGACCT GCAGGACGGA CCGTCGCAGG CACGACGGGC 387 CGTCGCAGGC TACGCAATCC CAGGCTGTGT CGGATTTCTG TTAATTTATT TAAGGGGCAT 6928 | || |||| | || ||||| ||| ||| || ||||||||| ||| || |||||| | | CATCACAGGT TGCGTAATCC CAGTCTGGGT CGGATTTCT- TTACACGTTT TAAGGGACGT 446 TTTGGACTAT TTCCTACTTT AATTATAAAG -TGGTGGGTT AATGTTAATA AGTCTAATTA 6869 ||||||||| |||||||||| |||||||||| | ||||||| ||||||||| |||||||||| TTTGGACTA- TTCCTACTTT AATTATAAAG TTAGTGGGTT TATGTTAATA AGTCTAATTA 505 CTTGGGGGTT AAAAGAGGTA ACCTTAAGTT AACTAGTGGG ------TT-- ATCTTTTATA 6817 | |||||||| |||||||||| ||||| ||| || ||||||| || ||||||||| CCTGGGGGTT AAAAGAGGTA ACCTTGAGTA AATTAGTGGG TTATTATTCC ATCTTTTATT 565 CTTAATTATA TGTTAATTAG GGTAAAAGAA AGAGGGTTGG AATAAGAAAA ATAAGAAAGA 6757 |||||||||| || ||||||| |||||||||| ||||||| | |||||||||| | | ||||| CTTAATTATA TGCTAATTAG GGTAAAAGAA GGAGGGTTTG AATAAGAAAA A-GA-AAAGA 623 ACAAAGAGAG ACAGAAAAAG AA 6735 ||| | |||| | |||| || || ACAGAAAGAG AGAGAAGGAG AA 645 hqPGS_C06HBa0158P14.1-16-_SGN-E374999- (7280 6735) ******************************************************************************** EST sequence 29 -strand 618 n (File: SGN-E396054-) 1 TTGTTTCTAA TAGTGTTATA AATCGTAAAA TAATAATAAT ATTTAAGTAG GAAGAACATA 61 AATGTAACGA CCTGTTTAGT CGTTTTGAGT AGCAGATTTT ATTTTTGGAA AAACAGGTTG 121 AGACGACGGA ACCCACGACG GACCGTCATG AGCACGATGG ACCGTCGAGG AGTCTCGTTT 181 CAAAACACTT AGAAATTCTG AAATTGGGTA CTAAAAATCG ACTCTCTGAA CTTCGTAACG 241 GAATGGCACG ACGGACCGTC ACGGGCGTGA CGGACCGTCA CAGACTCTTT GGTGGAAATT 301 GAGTCTCTGA ACCTTGCGAC GACCTGCAGG ACGGACCGTC GCAGGCACGA CGGGCCATCA 361 CAGGTTGCGT AATCCCAGTC TGGGTCGGAT TTCTTTACAC GTTTTAAGGG ACGTTTTGGA 421 CTATTCCTAC TTTAATTATA AAGTTAGTGG GTTTATGTTA ATAAGTCTAA TTACCTGGGG 481 GTTAAAAGAG GTAACCTTGA GTAAATTAGT GGGTTATTAT TCCATCTTTT ATTCTTAATT 541 ATATGCTAAT TAGGGTAAAA GAAGGAGGGT TTGAATAAGA AAAAGAAAAG AACAGAAAGA 601 GAGAGAAGGA GAATCGAT Predicted gene structure (within gDNA segment 9099 to 5044): Exon 1 7280 6735 ( 546 n); cDNA 63 613 ( 551 n); score: 0.842 MATCH C06HBa0158P14.1-16- SGN-E396054- 0.842 546 0.883 C PGS_C06HBa0158P14.1-16-_SGN-E396054- (7280 6735) Alignment (genomic DNA sequence = upper lines): TGTAACGACC TGTTTAGTCA TTTTGAGCAG CAGATTTTAT TTCTGGAAAA ATAGGCTGAG 7221 |||||||||| ||||||||| ||||||| || |||||||||| || ||||||| | ||| |||| TGTAACGACC TGTTTAGTCG TTTTGAGTAG CAGATTTTAT TTTTGGAAAA ACAGGTTGAG 122 GCAACGGATC CCACGACGGA CCGTCATGGG CACGACGGAC CGTCGCAGGG TCTCGTTTCA 7161 | ||||| | |||||||||| |||||||| | ||||| |||| ||||| | | |||||||||| ACGACGGAAC CCACGACGGA CCGTCATGAG CACGATGGAC CGTCGAGGAG TCTCGTTTCA 182 AAACACTTAG AAAATCTGAA ATTGGGTACT GAAAATCGAC TCTCTGAACT TCGTGACGGA 7101 |||||||||| ||| |||||| |||||||||| ||||||||| |||||||||| |||| ||||| AAACACTTAG AAATTCTGAA ATTGGGTACT AAAAATCGAC TCTCTGAACT TCGTAACGGA 242 ATGGCAGGAC GGACCGTCAC AGGCGTGACG GACCGTCACA GAGCCTTCAG TGAAAACCCA 7041 |||||| ||| |||||||||| ||||||||| |||||||||| || ||| | || ||| | ATGGCACGAC GGACCGTCAC GGGCGTGACG GACCGTCACA GACTCTTTGG TGGAAATTGA 302 TTCTCTGAAC CTTACGACGA CTTGCAGGAC GGACCGTCGT AGGCACGACG GGCCGTCGCA 6981 ||||||||| ||| |||||| | |||||||| ||||||||| |||||||||| |||| || || GTCTCTGAAC CTTGCGACGA CCTGCAGGAC GGACCGTCGC AGGCACGACG GGCCATCACA 362 GGCTACGCAA TCCCAGGCTG TGTCGGATTT CTGTTAATTT ATTTAAGGGG CATTTTGGAC 6921 || | || || |||||| ||| ||||||||| || ||| |||||||| | |||||||| GGTTGCGTAA TCCCAGTCTG GGTCGGATTT CT-TTACACG TTTTAAGGGA CGTTTTGGAC 421 TATTTCCTAC TTTAATTATA AAG-TGGTGG GTTAATGTTA ATAAGTCTAA TTACTTGGGG 6862 || ||||||| |||||||||| ||| | |||| ||| |||||| |||||||||| |||| ||||| TA-TTCCTAC TTTAATTATA AAGTTAGTGG GTTTATGTTA ATAAGTCTAA TTACCTGGGG 480 GTTAAAAGAG GTAACCTTAA GTTAACTAGT GGG------T T--ATCTTTT ATACTTAATT 6810 |||||||||| |||||||| | || || |||| ||| | | ||||||| || ||||||| GTTAAAAGAG GTAACCTTGA GTAAATTAGT GGGTTATTAT TCCATCTTTT ATTCTTAATT 540 ATATGTTAAT TAGGGTAAAA GAAAGAGGGT TGGAATAAGA AAAATAAGAA AGAACAAAGA 6750 ||||| |||| |||||||||| ||| |||||| | |||||||| |||| | || |||||| | | ATATGCTAAT TAGGGTAAAA GAAGGAGGGT TTGAATAAGA AAAA-GA-AA AGAACAGAAA 598 GAGACAGAAA AAGAA 6735 |||| |||| |||| GAGAGAGAAG GAGAA 613 hqPGS_C06HBa0158P14.1-16-_SGN-E396054- (7280 6735) ******************************************************************************** EST sequence 31 -strand 610 n (File: SGN-E396058-) 1 AATAGTGTTA TAAATCGTAA AATAATAATA ATAGTTAACT ATGAAGAACC TAAATGTAAC 61 GACCTGTTTA GTCGTTGTGA GTAGCAGATT TTATTTTTGG AAACACAGGT TGAGACGACG 121 GAACCCACGA CGGACCGTCA TGAGCACGAT GGACCGTCGA GGAGTCTCGT TTCAAAACAC 181 TTAGAAATTC TGAAATTGGG TACTAAAAAT CGACTCTCTG AACTTCGTAA CGGAATGGCA 241 CGACGGACCG TCACGGGCGT GACGGACCGT CACAGACTCT TTGGTGGAAA TTGAGTCTCT 301 GAACCTTGCG ACGACCTGCA GGACGGACCG TCGCAGGCAC GACGGGCCAT CACAGGTTGC 361 GTAATCCCAG TCTGGGTCGG ATTTCTTTAC ACGTTTTAAG GGACGTTTTG GACTATTCCT 421 ACTTTAATTA TAAAGTTAGT GGGTTTATGT TAATAAGTCT AATTACCTGG GGGTTAAAAG 481 AGGTAACCTT GAGTAAATTA GTGGGTTATT ATTCCATCTT TTATTCTTAA TTATATGCTA 541 ATTAGGGTAA AAGAAGGAGG GTTTGAATAA GAAAAAGAAA AGAACAGAAA GAGAGAGAAG 601 GAGAATCGAT Predicted gene structure (within gDNA segment 9099 to 5044): Exon 1 7280 6735 ( 546 n); cDNA 55 605 ( 551 n); score: 0.838 MATCH C06HBa0158P14.1-16- SGN-E396058- 0.838 546 0.895 C PGS_C06HBa0158P14.1-16-_SGN-E396058- (7280 6735) Alignment (genomic DNA sequence = upper lines): TGTAACGACC TGTTTAGTCA TTTTGAGCAG CAGATTTTAT TTCTGGAAAA ATAGGCTGAG 7221 |||||||||| ||||||||| || |||| || |||||||||| || |||||| | ||| |||| TGTAACGACC TGTTTAGTCG TTGTGAGTAG CAGATTTTAT TTTTGGAAAC ACAGGTTGAG 114 GCAACGGATC CCACGACGGA CCGTCATGGG CACGACGGAC CGTCGCAGGG TCTCGTTTCA 7161 | ||||| | |||||||||| |||||||| | ||||| |||| ||||| | | |||||||||| ACGACGGAAC CCACGACGGA CCGTCATGAG CACGATGGAC CGTCGAGGAG TCTCGTTTCA 174 AAACACTTAG AAAATCTGAA ATTGGGTACT GAAAATCGAC TCTCTGAACT TCGTGACGGA 7101 |||||||||| ||| |||||| |||||||||| ||||||||| |||||||||| |||| ||||| AAACACTTAG AAATTCTGAA ATTGGGTACT AAAAATCGAC TCTCTGAACT TCGTAACGGA 234 ATGGCAGGAC GGACCGTCAC AGGCGTGACG GACCGTCACA GAGCCTTCAG TGAAAACCCA 7041 |||||| ||| |||||||||| ||||||||| |||||||||| || ||| | || ||| | ATGGCACGAC GGACCGTCAC GGGCGTGACG GACCGTCACA GACTCTTTGG TGGAAATTGA 294 TTCTCTGAAC CTTACGACGA CTTGCAGGAC GGACCGTCGT AGGCACGACG GGCCGTCGCA 6981 ||||||||| ||| |||||| | |||||||| ||||||||| |||||||||| |||| || || GTCTCTGAAC CTTGCGACGA CCTGCAGGAC GGACCGTCGC AGGCACGACG GGCCATCACA 354 GGCTACGCAA TCCCAGGCTG TGTCGGATTT CTGTTAATTT ATTTAAGGGG CATTTTGGAC 6921 || | || || |||||| ||| ||||||||| || ||| |||||||| | |||||||| GGTTGCGTAA TCCCAGTCTG GGTCGGATTT CT-TTACACG TTTTAAGGGA CGTTTTGGAC 413 TATTTCCTAC TTTAATTATA AAG-TGGTGG GTTAATGTTA ATAAGTCTAA TTACTTGGGG 6862 || ||||||| |||||||||| ||| | |||| ||| |||||| |||||||||| |||| ||||| TA-TTCCTAC TTTAATTATA AAGTTAGTGG GTTTATGTTA ATAAGTCTAA TTACCTGGGG 472 GTTAAAAGAG GTAACCTTAA GTTAACTAGT GGG------T T--ATCTTTT ATACTTAATT 6810 |||||||||| |||||||| | || || |||| ||| | | ||||||| || ||||||| GTTAAAAGAG GTAACCTTGA GTAAATTAGT GGGTTATTAT TCCATCTTTT ATTCTTAATT 532 ATATGTTAAT TAGGGTAAAA GAAAGAGGGT TGGAATAAGA AAAATAAGAA AGAACAAAGA 6750 ||||| |||| |||||||||| ||| |||||| | |||||||| |||| | || |||||| | | ATATGCTAAT TAGGGTAAAA GAAGGAGGGT TTGAATAAGA AAAA-GA-AA AGAACAGAAA 590 GAGACAGAAA AAGAA 6735 |||| |||| |||| GAGAGAGAAG GAGAA 605 hqPGS_C06HBa0158P14.1-16-_SGN-E396058- (7280 6735) ******************************************************************************** EST sequence 17 -strand 713 n (File: SGN-E550464-) 1 TTTTTTTTTT TTTTATGAAT TAGCTCAATG AAAAATGAGT AAATTTTTTA TATCTTATGG 61 CATAATTTTT CATTAATTCA TGGTAGAGAA AATCTTTGTT TCTAATAGTG TTATAAATCG 121 TAAAATAATA ATAATATTTA AGTAGGAAGA ACATAAATGT ANCGACCTGT TTAGTCGTTT 181 TGAGTAGCAG ATTTTATTTT TGGAAAAACA GGTTGAGACG ACGGAACCCA CGACGGACCG 241 TCATGAGCAC GATGGACCGT CGAGGAGTCT CGTTTCAAAA CACTTAGAAA TTCTGAAATT 301 GGGTACTAAA AATCGACTCT CTGAACTTCG TAACGGAATG GCACGACGGA CCGTCACGGG 361 CGTGACGGAC CGTCACAGAC TCTTTGGTGG AAATTGAGTC TCTGAACCTT GCGACGACCT 421 GCAGGACGGA CCGTCGCAGG CACGACGGGC CATCACAGGT TGCGTAATCC CAGTCTGGGT 481 CGGATTTCTT TACACGTTTT AAGGGACGTT TTGGACTATT CCTACTTTAA TTATAAAGTT 541 AGTGGGTTTA TGTTAATAAG TCTAATTACC TGGGGGTTAA AAGAGGTAAC CTTGAGTAAA 601 TTAGTGGGTT ATTATTCCAT CTTTTATTCT TAATTATATG CTAATTAGGG TAAAAGAAGG 661 AGGGTTTGAA TAAGAAAAAG AAAAGAACAG AAAGAGAGAG AAGGAGAATC GAT Predicted gene structure (within gDNA segment 9099 to 5044): Exon 1 8833 8815 ( 19 n); cDNA 131 149 ( 19 n); score: 0.737 Intron 1 8814 7902 ( 913 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0) Exon 2 7901 7889 ( 13 n); cDNA 150 162 ( 13 n); score: 0.769 Intron 2 7888 7276 ( 613 n); Pd: 0.996 (s: 0), Pa: 0.000 (s: 0.92) Exon 3 7275 6735 ( 541 n); cDNA 163 708 ( 546 n); score: 0.840 PPA cDNA 16 1 MATCH C06HBa0158P14.1-16- SGN-E550464- 0.840 573 0.804 C PGS_C06HBa0158P14.1-16-_SGN-E550464- (8833 8815,7901 7889,7275 6735) Alignment (genomic DNA sequence = upper lines): ATCAAATTTA AGAAAAAAGG TAATGGATCG TTATAGAGGC CCCTTTAATT TCAGCCCCCT 8774 || | ||||| || | ||| ATAATATTTA AGTAGGAAG. .......... .......... .......... .......... 149 ATTTATTTAT TTTTACATAT GTATACATTA TACTCTTTTG TTTTAATGTA TATAATGATG 8714 .......... .......... .......... .......... .......... .......... 149 TTTTAATTTT ATGAGTCAAA TGAGTTACCT TTTACTATAA TATTTTATAT TATTAACTAT 8654 .......... .......... .......... .......... .......... .......... 149 TGTGACTTCA ATACTTATTA TATAGTTTCA AACATATAAA TTTTATTTTT AAAAATTTAT 8594 .......... .......... .......... .......... .......... .......... 149 ATTTAAGCAT ACAATCAAAG TTCAAAAGTT CTTATCCCCA AAAGTGAAAA ATAACATATA 8534 .......... .......... .......... .......... .......... .......... 149 ATTCGATATA CAGAGAGTAT TTAAATTTGG GCAACTTTCA CATATAGCAA ATAAAAAATT 8474 .......... .......... .......... .......... .......... .......... 149 CATATTTGTA TGCTATAGCA AAGTTTGCAT AATTGCGCTC AATAGCAAAC ATTGAAACTG 8414 .......... .......... .......... .......... .......... .......... 149 TATAATTCGC TATACATATA CATTTGAAGC AAATTGTATA AAACAGAGTG CATAAAACAA 8354 .......... .......... .......... .......... .......... .......... 149 GAAAGAGAAA GACACTTGGG CAGAGAACTG TATAAAAATG ATATGTATAA AACGAATTGT 8294 .......... .......... .......... .......... .......... .......... 149 ATTATTATAA GTGTATAGAA TAATTATATA CAATTTGAAT TTGTATAAAA TGAGAAAGAG 8234 .......... .......... .......... .......... .......... .......... 149 AGAAAGACAA AAGAGACTTG ACAAGGAATA TACAATTGAA TCGAATTGTA TAAAATGAGA 8174 .......... .......... .......... .......... .......... .......... 149 AAGAGAGAAA TTAGATACAA TTTGAAAATT GTATAAAATG AGAAAGAGAG AAAGGCAAAA 8114 .......... .......... .......... .......... .......... .......... 149 GAAATTGCGC AGGGGAGTAT TTATTGTATA ATTATAAGTG TATAGGACGA AAATATATGT 8054 .......... .......... .......... .......... .......... .......... 149 ACTTGCAAGT GTATATACAA TTTTCTCACG CTTTATACAA ACAAAAACAC AATTTATACA 7994 .......... .......... .......... .......... .......... .......... 149 CTTCACTTCT GTTTGTATAA GTGAGAAAGG CGGGGGTGGC GAGCAAGATT TGGGAGAGTG 7934 .......... .......... .......... .......... .......... .......... 149 GCGAGCGAGA TCTGGAAGAG GGGAGAGAGG AGAACAAAAA TATATGTATT TATACAATTT 7874 |||| ||| | || .......... .......... .......... ..AACATAAA TGTAN..... .......... 162 TCTCTACTTT ATCAATTATA AACAATTTTT ATACACTTCT GTTTGTATAA AAAGTGAGGA 7814 .......... .......... .......... .......... .......... .......... 162 AGCGAACGAG AGATTAGAGG AGAGTAGCGA GCGAGATATT TGGGAGAGAG GCGCCTGACA 7754 .......... .......... .......... .......... .......... .......... 162 ATTTTTTTGC AAACGTTAGC TATGGAGCAC AATTAAATCA AACCCTAGCT ACTCCATTTA 7694 .......... .......... .......... .......... .......... .......... 162 TTTTAGGTTA TTAGTTTGCT ATTATATAAG ATTTTGTCTA TATAATTTTT TTTCATACTA 7634 .......... .......... .......... .......... .......... .......... 162 TAGGTAAACT TCTTTGATTG TTAGATTTAA AATCTTGAAA TAAAATAGGT ACCTTCTACA 7574 .......... .......... .......... .......... .......... .......... 162 TTATATAAAT ATGACCCTAA TGCTACAAAA TTATTTGGCT AAAAAATTAT TTGGTCCAAT 7514 .......... .......... .......... .......... .......... .......... 162 ATATTCCTAT TTGTTGAAAT GATTTCCCTA CTTAATAATT GACACTAGAT CTTGCCTTGT 7454 .......... .......... .......... .......... .......... .......... 162 GTTATAATTG AAGATATATT TGATACCACA TGCCTATTTT AATCAAAGTT GTATTTAAAA 7394 .......... .......... .......... .......... .......... .......... 162 TTCTGATTCC ACGTTCGTTA CAGTTAAACT TTTTTAGTTT ATTTTTAAAA AAAAGATAGT 7334 .......... .......... .......... .......... .......... .......... 162 TTATTAAGGA TTTTCTTCCC TTCTTCTACC TTGTTGTCCG ATAATATATA GCTTGTAACG 7274 || .......... .......... .......... .......... .......... ........CG 164 ACCTGTTTAG TCATTTTGAG CAGCAGATTT TATTTCTGGA AAAATAGGCT GAGGCAACGG 7214 |||||||||| || ||||||| ||||||||| ||||| |||| |||| ||| | ||| | |||| ACCTGTTTAG TCGTTTTGAG TAGCAGATTT TATTTTTGGA AAAACAGGTT GAGACGACGG 224 ATCCCACGAC GGACCGTCAT GGGCACGACG GACCGTCGCA GGGTCTCGTT TCAAAACACT 7154 | |||||||| |||||||||| | |||||| | |||||||| | |||||||| |||||||||| AACCCACGAC GGACCGTCAT GAGCACGATG GACCGTCGAG GAGTCTCGTT TCAAAACACT 284 TAGAAAATCT GAAATTGGGT ACTGAAAATC GACTCTCTGA ACTTCGTGAC GGAATGGCAG 7094 |||||| ||| |||||||||| ||| |||||| |||||||||| ||||||| || ||||||||| TAGAAATTCT GAAATTGGGT ACTAAAAATC GACTCTCTGA ACTTCGTAAC GGAATGGCAC 344 GACGGACCGT CACAGGCGTG ACGGACCGTC ACAGAGCCTT CAGTGAAAAC CCATTCTCTG 7034 |||||||||| ||| |||||| |||||||||| ||||| ||| ||| ||| | |||||| GACGGACCGT CACGGGCGTG ACGGACCGTC ACAGACTCTT TGGTGGAAAT TGAGTCTCTG 404 AACCTTACGA CGACTTGCAG GACGGACCGT CGTAGGCACG ACGGGCCGTC GCAGGCTACG 6974 |||||| ||| |||| ||||| |||||||||| || ||||||| ||||||| || |||| | || AACCTTGCGA CGACCTGCAG GACGGACCGT CGCAGGCACG ACGGGCCATC ACAGGTTGCG 464 CAATCCCAGG CTGTGTCGGA TTTCTGTTAA TTTATTTAAG GGGCATTTTG GACTATTTCC 6914 |||||||| ||| |||||| ||||| ||| |||||| || | ||||| ||||| |||| TAATCCCAGT CTGGGTCGGA TTTCT-TTAC ACGTTTTAAG GGACGTTTTG GACTA-TTCC 522 TACTTTAATT ATAAAG-TGG TGGGTTAATG TTAATAAGTC TAATTACTTG GGGGTTAAAA 6855 |||||||||| |||||| | | |||||| ||| |||||||||| ||||||| || |||||||||| TACTTTAATT ATAAAGTTAG TGGGTTTATG TTAATAAGTC TAATTACCTG GGGGTTAAAA 582 GAGGTAACCT TAAGTTAACT AGTGGG---- --TT--ATCT TTTATACTTA ATTATATGTT 6803 |||||||||| | ||| || | |||||| || |||| ||||| |||| |||||||| | GAGGTAACCT TGAGTAAATT AGTGGGTTAT TATTCCATCT TTTATTCTTA ATTATATGCT 642 AATTAGGGTA AAAGAAAGAG GGTTGGAATA AGAAAAATAA GAAAGAACAA AGAGAGACAG 6743 |||||||||| |||||| ||| |||| ||||| ||||||| | |||||||| | ||||| || AATTAGGGTA AAAGAAGGAG GGTTTGAATA AGAAAAA-GA -AAAGAACAG AAAGAGAGAG 700 AAAAAGAA 6735 || |||| AAGGAGAA 708 hqPGS_C06HBa0158P14.1-16-_SGN-E550464- (7275 6735) ******************************************************************************** EST sequence 42 -strand 545 n (File: SGN-E241959-) 1 TGTTTAGTCG TTTTGAGTAG CAGATTTTAT TTTTGGAAAA ACAGGTTGAG ACGACGGAAC 61 CCACGACGGA CCGTCATGAG CACGATGGAC CGTCGAGGAG TCTCGTTTCA AAACACTTAG 121 AAATTCTGAA ATTGGGTACT AAAAATCGAC TCTCTGAACT TCGTAACGGA ATGGCACGAC 181 GGACCGTCAC GGGCGTGACG GACCGTCACA GACTCTTTGG TGGAAATTGA GTCTCTGAAC 241 CTTGCGACGA CCTGCAGGAC GGACCGTCGC AGGCACGACG GGCCATCACA GGTTGCGTAA 301 TCCCAGTCTG GGTCGGATTT CTTTACACGT TTTAAGGGAC GTTTTGGACT ATTCCTACTT 361 TAATTATAAA GTTAGTGGGT TTATGTTAAT AAGTCTAATT ACCTGGGGGT TAAAAGAGGT 421 AACCTTGAGT AAATTAGTGG GTTATTATTC CATCTTTTAT TCTTAATTAT ATGCTAATTA 481 GGGTAAAAGA AGGAGGGTTT GAATAAGAAA AAGAAAAGAA CAGAAAGAGA GAGAAGGAGA 541 ATCGA Predicted gene structure (within gDNA segment 8771 to 5054): Exon 1 7270 6735 ( 536 n); cDNA 1 541 ( 541 n); score: 0.839 MATCH C06HBa0158P14.1-16- SGN-E241959- 0.839 536 0.983 C PGS_C06HBa0158P14.1-16-_SGN-E241959- (7270 6735) Alignment (genomic DNA sequence = upper lines): TGTTTAGTCA TTTTGAGCAG CAGATTTTAT TTCTGGAAAA ATAGGCTGAG GCAACGGATC 7211 ||||||||| ||||||| || |||||||||| || ||||||| | ||| |||| | ||||| | TGTTTAGTCG TTTTGAGTAG CAGATTTTAT TTTTGGAAAA ACAGGTTGAG ACGACGGAAC 60 CCACGACGGA CCGTCATGGG CACGACGGAC CGTCGCAGGG TCTCGTTTCA AAACACTTAG 7151 |||||||||| |||||||| | ||||| |||| ||||| | | |||||||||| |||||||||| CCACGACGGA CCGTCATGAG CACGATGGAC CGTCGAGGAG TCTCGTTTCA AAACACTTAG 120 AAAATCTGAA ATTGGGTACT GAAAATCGAC TCTCTGAACT TCGTGACGGA ATGGCAGGAC 7091 ||| |||||| |||||||||| ||||||||| |||||||||| |||| ||||| |||||| ||| AAATTCTGAA ATTGGGTACT AAAAATCGAC TCTCTGAACT TCGTAACGGA ATGGCACGAC 180 GGACCGTCAC AGGCGTGACG GACCGTCACA GAGCCTTCAG TGAAAACCCA TTCTCTGAAC 7031 |||||||||| ||||||||| |||||||||| || ||| | || ||| | ||||||||| GGACCGTCAC GGGCGTGACG GACCGTCACA GACTCTTTGG TGGAAATTGA GTCTCTGAAC 240 CTTACGACGA CTTGCAGGAC GGACCGTCGT AGGCACGACG GGCCGTCGCA GGCTACGCAA 6971 ||| |||||| | |||||||| ||||||||| |||||||||| |||| || || || | || || CTTGCGACGA CCTGCAGGAC GGACCGTCGC AGGCACGACG GGCCATCACA GGTTGCGTAA 300 TCCCAGGCTG TGTCGGATTT CTGTTAATTT ATTTAAGGGG CATTTTGGAC TATTTCCTAC 6911 |||||| ||| ||||||||| || ||| |||||||| | |||||||| || ||||||| TCCCAGTCTG GGTCGGATTT CT-TTACACG TTTTAAGGGA CGTTTTGGAC TA-TTCCTAC 358 TTTAATTATA AAG-TGGTGG GTTAATGTTA ATAAGTCTAA TTACTTGGGG GTTAAAAGAG 6852 |||||||||| ||| | |||| ||| |||||| |||||||||| |||| ||||| |||||||||| TTTAATTATA AAGTTAGTGG GTTTATGTTA ATAAGTCTAA TTACCTGGGG GTTAAAAGAG 418 GTAACCTTAA GTTAACTAGT GGG---TTA- T-C---TTTT ATACTTAATT ATATGTTAAT 6800 |||||||| | || || |||| ||| ||| | | |||| || ||||||| ||||| |||| GTAACCTTGA GTAAATTAGT GGGTTATTAT TCCATCTTTT ATTCTTAATT ATATGCTAAT 478 TAGGGTAAAA GAAAGAGGGT TGGAATAAGA AAAATAAGAA AGAACAAAGA GAGACAGAAA 6740 |||||||||| ||| |||||| | |||||||| |||| | || |||||| | | |||| |||| TAGGGTAAAA GAAGGAGGGT TTGAATAAGA AAAA-GA-AA AGAACAGAAA GAGAGAGAAG 536 AAGAA 6735 |||| GAGAA 541 hqPGS_C06HBa0158P14.1-16-_SGN-E241959- (7270 6735) ******************************************************************************** EST sequence 33 -strand 472 n (File: SGN-E236652-) 1 TCATGAGCAC GATGGACCGT CGAGGAGTCT CGTTTCAAAA CACTTAGAAA TTCTGAAATT 61 GGGTACTAAA AATCGACTCT CTGAACTTCG TAACGGAATG GCACGACGGA CCGTCACGGG 121 CGTGACGGAC CGTCACAGAC TCTTTGGTGG AAATTGAGTC TCTGAACCTT GCGACGACCT 181 GCAGGACGGA CCGTCGCAGG CACGACGGGC CATCACAGGT TGCGTAATCC CAGTCTGGGT 241 CGGATTTCTT TACACGTTTT AAGGGACGTT TTGGACTATT CCTACTTTAA TTATAAAGTT 301 AGTGGGTTTA TGTTAATAAG TCTAATTACC TGGGGGTTAA AAGAGGTAAC CTTGAGTAAA 361 TTAGTGGGTT ATTATTCCAT CTTTTATTCT TAATTATATG CTAATTAGGG TAAAAGAAGG 421 AGGGTTTGAA TAAGAAAAAG AAAAGAACAG AAAGAGAGAG AAGGAGAATC GA Predicted gene structure (within gDNA segment 8041 to 5054): Exon 1 7197 6735 ( 463 n); cDNA 1 468 ( 468 n); score: 0.830 MATCH C06HBa0158P14.1-16- SGN-E236652- 0.830 463 0.981 C PGS_C06HBa0158P14.1-16-_SGN-E236652- (7197 6735) Alignment (genomic DNA sequence = upper lines): TCATGGGCAC GACGGACCGT CGCAGGGTCT CGTTTCAAAA CACTTAGAAA ATCTGAAATT 7138 ||||| |||| || ||||||| || | |||| |||||||||| |||||||||| ||||||||| TCATGAGCAC GATGGACCGT CGAGGAGTCT CGTTTCAAAA CACTTAGAAA TTCTGAAATT 60 GGGTACTGAA AATCGACTCT CTGAACTTCG TGACGGAATG GCAGGACGGA CCGTCACAGG 7078 ||||||| || |||||||||| |||||||||| | |||||||| ||| |||||| ||||||| || GGGTACTAAA AATCGACTCT CTGAACTTCG TAACGGAATG GCACGACGGA CCGTCACGGG 120 CGTGACGGAC CGTCACAGAG CCTTCAGTGA AAACCCATTC TCTGAACCTT ACGACGACTT 7018 |||||||||| ||||||||| ||| ||| ||| | || |||||||||| ||||||| | CGTGACGGAC CGTCACAGAC TCTTTGGTGG AAATTGAGTC TCTGAACCTT GCGACGACCT 180 GCAGGACGGA CCGTCGTAGG CACGACGGGC CGTCGCAGGC TACGCAATCC CAGGCTGTGT 6958 |||||||||| |||||| ||| |||||||||| | || |||| | || ||||| ||| ||| || GCAGGACGGA CCGTCGCAGG CACGACGGGC CATCACAGGT TGCGTAATCC CAGTCTGGGT 240 CGGATTTCTG TTAATTTATT TAAGGGGCAT TTTGGACTAT TTCCTACTTT AATTATAAAG 6898 ||||||||| ||| || |||||| | | ||||||||| |||||||||| |||||||||| CGGATTTCT- TTACACGTTT TAAGGGACGT TTTGGACTA- TTCCTACTTT AATTATAAAG 298 -TGGTGGGTT AATGTTAATA AGTCTAATTA CTTGGGGGTT AAAAGAGGTA ACCTTAAGTT 6839 | ||||||| ||||||||| |||||||||| | |||||||| |||||||||| ||||| ||| TTAGTGGGTT TATGTTAATA AGTCTAATTA CCTGGGGGTT AAAAGAGGTA ACCTTGAGTA 358 AACTAGTGGG ------TT-- ATCTTTTATA CTTAATTATA TGTTAATTAG GGTAAAAGAA 6787 || ||||||| || ||||||||| |||||||||| || ||||||| |||||||||| AATTAGTGGG TTATTATTCC ATCTTTTATT CTTAATTATA TGCTAATTAG GGTAAAAGAA 418 AGAGGGTTGG AATAAGAAAA ATAAGAAAGA ACAAAGAGAG ACAGAAAAAG AA 6735 ||||||| | |||||||||| | | ||||| ||| | |||| | |||| || || GGAGGGTTTG AATAAGAAAA A-GA-AAAGA ACAGAAAGAG AGAGAAGGAG AA 468 hqPGS_C06HBa0158P14.1-16-_SGN-E236652- (7197 6735) ******************************************************************************** EST sequence 32 -strand 454 n (File: SGN-E396070-) 1 TCGAGGAGTC TAGTTTCAAA ACAATTAGAA ACTCCCCCCC CCGGTACTAA AAATCGACTC 61 TCTGAACTTC GTAACGGAAT GGCACGACGG ACCGTCACGG GCGTGACGGA CCGTCACAGA 121 CTCTTTGGTG GAAATTGAGT CTCTGAACCT TGCGACGACC TGCAGGACGG ACCGTCGCAG 181 GCACGACGGG CCATCACAGG TTGCGTAATC CCAGTCTGGG TCGGATTTCT TTACACGTTT 241 TAAGGGACGT TTTGGACTAT TCCTACTTTA ATTATAAAGT TAGTGGGTTT ATGTTAATAA 301 GTCTAATTAC CTGGGGGTTA AAAGAGGTAA CCTTGAGTAA ATTAGTGGGT TATTATTCCA 361 TCTTTTATTC TTAATTATAT GCTAATTAGG GTAAAAGAAG GAGGGTTTGA ATAAGAAAAA 421 GAAAAGAACA GAAAGAGAGA GAAGGAGAAT CGAT Predicted gene structure (within gDNA segment 9099 to 5044): Exon 1 7178 6735 ( 444 n); cDNA 1 449 ( 449 n); score: 0.805 MATCH C06HBa0158P14.1-16- SGN-E396070- 0.805 444 0.978 C PGS_C06HBa0158P14.1-16-_SGN-E396070- (7178 6735) Alignment (genomic DNA sequence = upper lines): TCGCAGGGTC TCGTTTCAAA ACACTTAGAA AATCTGAAAT TGGGTACTGA AAATCGACTC 7119 ||| | ||| | |||||||| ||| |||||| | || |||||| | |||||||||| TCGAGGAGTC TAGTTTCAAA ACAATTAGAA ACTCCCCCCC CCGGTACTAA AAATCGACTC 60 TCTGAACTTC GTGACGGAAT GGCAGGACGG ACCGTCACAG GCGTGACGGA CCGTCACAGA 7059 |||||||||| || ||||||| |||| ||||| |||||||| | |||||||||| |||||||||| TCTGAACTTC GTAACGGAAT GGCACGACGG ACCGTCACGG GCGTGACGGA CCGTCACAGA 120 GCCTTCAGTG AAAACCCATT CTCTGAACCT TACGACGACT TGCAGGACGG ACCGTCGTAG 6999 ||| ||| ||| | | |||||||||| | ||||||| |||||||||| ||||||| || CTCTTTGGTG GAAATTGAGT CTCTGAACCT TGCGACGACC TGCAGGACGG ACCGTCGCAG 180 GCACGACGGG CCGTCGCAGG CTACGCAATC CCAGGCTGTG TCGGATTTCT GTTAATTTAT 6939 |||||||||| || || |||| | || |||| |||| ||| | |||||||||| ||| | GCACGACGGG CCATCACAGG TTGCGTAATC CCAGTCTGGG TCGGATTTCT -TTACACGTT 239 TTAAGGGGCA TTTTGGACTA TTTCCTACTT TAATTATAAA G-TGGTGGGT TAATGTTAAT 6880 ||||||| | |||||||||| ||||||||| |||||||||| | | |||||| | |||||||| TTAAGGGACG TTTTGGACTA -TTCCTACTT TAATTATAAA GTTAGTGGGT TTATGTTAAT 298 AAGTCTAATT ACTTGGGGGT TAAAAGAGGT AACCTTAAGT TAACTAGTGG G------TT- 6827 |||||||||| || ||||||| |||||||||| |||||| ||| || |||||| | || AAGTCTAATT ACCTGGGGGT TAAAAGAGGT AACCTTGAGT AAATTAGTGG GTTATTATTC 358 -ATCTTTTAT ACTTAATTAT ATGTTAATTA GGGTAAAAGA AAGAGGGTTG GAATAAGAAA 6768 ||||||||| ||||||||| ||| |||||| |||||||||| | ||||||| |||||||||| CATCTTTTAT TCTTAATTAT ATGCTAATTA GGGTAAAAGA AGGAGGGTTT GAATAAGAAA 418 AATAAGAAAG AACAAAGAGA GACAGAAAAA GAA 6735 || | |||| |||| | ||| || |||| | ||| AA-GA-AAAG AACAGAAAGA GAGAGAAGGA GAA 449 hqPGS_C06HBa0158P14.1-16-_SGN-E396070- (7178 6735) ******************************************************************************** EST sequence 46 +strand 679 n (File: SGN-E550127+) 1 ATGAGTAATT TTTTATATTT TATGTCATAA TTTTTTCATT AATTCATGGT TGTGCAAATC 61 TTTGTTTCTA ATAGTGTTAT AAATCGTAAA ATAATAATAA TATTTAAGTA GGAAGAACAT 121 AAATGTAACG ACCTGTTTAG TCGTTTTGAG TAGCAGATTT TATTTTTGGA AAAACAGGTT 181 GAGACGACGG AACCCACGAC GGACCGTCAT GAGCACGATG GACCGTCGAG GAGTCTCGTT 241 TCAAAACACT TAGAAATTCT GAAATTGGGT ACTAAAAATC GACTCTCTGA ACTTCGTAAC 301 GGAATGGCAC GACGGACCGT CACGGGCGTG ACGGACCGTC ACAGACTCTT TGGTGGAAAT 361 TGAGTCTCTG AACCTTGCGA CGACCTGCAG GACGGACCGT CGCAGGCACG ACGGGCCATC 421 ACAGGTTGCG TAATCCCAGT CTGGGTCGGA TTTCTTTACA CGTTTTAAGG GACGTTTTGG 481 ACTATTCCTA CTTTAATTAT AAAGTTAGTG GGTTTATGTT AATAAGTCTA ATTACCTGGG 541 GGTTAAAAGA GGTAACCTTG AGTAAATTAG TGGGTTATTA TTCCATCTTT TATTCTTAAT 601 TATATGCTAA TTAGGGTAAA AGAAGGAGGG TTTTGATAAG AAAAAGAAAA GGACAGAAAG 661 AGAGAGAAGG AGAATCGAT Predicted gene structure (within gDNA segment 9099 to 5034): Exon 1 8367 8358 ( 10 n); cDNA 114 123 ( 10 n); score: 0.800 Intron 1 8357 7281 (1077 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.94) Exon 2 7280 6798 ( 483 n); cDNA 124 602 ( 479 n); score: 0.866 MATCH C06HBa0158P14.1-16- SGN-E550127+ 0.866 493 0.726 C PGS_C06HBa0158P14.1-16-_SGN-E550127+ (8367 8358,7280 6798) Alignment (genomic DNA sequence = upper lines): AGTGCATAAA ACAAGAAAGA GAAAGACACT TGGGCAGAGA ACTGTATAAA AATGATATGT 8308 || |||||| AGAACATAAA .......... .......... .......... .......... .......... 123 ATAAAACGAA TTGTATTATT ATAAGTGTAT AGAATAATTA TATACAATTT GAATTTGTAT 8248 .......... .......... .......... .......... .......... .......... 123 AAAATGAGAA AGAGAGAAAG ACAAAAGAGA CTTGACAAGG AATATACAAT TGAATCGAAT 8188 .......... .......... .......... .......... .......... .......... 123 TGTATAAAAT GAGAAAGAGA GAAATTAGAT ACAATTTGAA AATTGTATAA AATGAGAAAG 8128 .......... .......... .......... .......... .......... .......... 123 AGAGAAAGGC AAAAGAAATT GCGCAGGGGA GTATTTATTG TATAATTATA AGTGTATAGG 8068 .......... .......... .......... .......... .......... .......... 123 ACGAAAATAT ATGTACTTGC AAGTGTATAT ACAATTTTCT CACGCTTTAT ACAAACAAAA 8008 .......... .......... .......... .......... .......... .......... 123 ACACAATTTA TACACTTCAC TTCTGTTTGT ATAAGTGAGA AAGGCGGGGG TGGCGAGCAA 7948 .......... .......... .......... .......... .......... .......... 123 GATTTGGGAG AGTGGCGAGC GAGATCTGGA AGAGGGGAGA GAGGAGAACA AAAATATATG 7888 .......... .......... .......... .......... .......... .......... 123 TATTTATACA ATTTTCTCTA CTTTATCAAT TATAAACAAT TTTTATACAC TTCTGTTTGT 7828 .......... .......... .......... .......... .......... .......... 123 ATAAAAAGTG AGGAAGCGAA CGAGAGATTA GAGGAGAGTA GCGAGCGAGA TATTTGGGAG 7768 .......... .......... .......... .......... .......... .......... 123 AGAGGCGCCT GACAATTTTT TTGCAAACGT TAGCTATGGA GCACAATTAA ATCAAACCCT 7708 .......... .......... .......... .......... .......... .......... 123 AGCTACTCCA TTTATTTTAG GTTATTAGTT TGCTATTATA TAAGATTTTG TCTATATAAT 7648 .......... .......... .......... .......... .......... .......... 123 TTTTTTTCAT ACTATAGGTA AACTTCTTTG ATTGTTAGAT TTAAAATCTT GAAATAAAAT 7588 .......... .......... .......... .......... .......... .......... 123 AGGTACCTTC TACATTATAT AAATATGACC CTAATGCTAC AAAATTATTT GGCTAAAAAA 7528 .......... .......... .......... .......... .......... .......... 123 TTATTTGGTC CAATATATTC CTATTTGTTG AAATGATTTC CCTACTTAAT AATTGACACT 7468 .......... .......... .......... .......... .......... .......... 123 AGATCTTGCC TTGTGTTATA ATTGAAGATA TATTTGATAC CACATGCCTA TTTTAATCAA 7408 .......... .......... .......... .......... .......... .......... 123 AGTTGTATTT AAAATTCTGA TTCCACGTTC GTTACAGTTA AACTTTTTTA GTTTATTTTT 7348 .......... .......... .......... .......... .......... .......... 123 AAAAAAAAGA TAGTTTATTA AGGATTTTCT TCCCTTCTTC TACCTTGTTG TCCGATAATA 7288 .......... .......... .......... .......... .......... .......... 123 TATAGCTTGT AACGACCTGT TTAGTCATTT TGAGCAGCAG ATTTTATTTC TGGAAAAATA 7228 ||| |||||||||| |||||| ||| |||| ||||| ||||||||| |||||||| | .......TGT AACGACCTGT TTAGTCGTTT TGAGTAGCAG ATTTTATTTT TGGAAAAACA 176 GGCTGAGGCA ACGGATCCCA CGACGGACCG TCATGGGCAC GACGGACCGT CGCAGGGTCT 7168 || |||| | ||||| |||| |||||||||| ||||| |||| || ||||||| || | |||| GGTTGAGACG ACGGAACCCA CGACGGACCG TCATGAGCAC GATGGACCGT CGAGGAGTCT 236 CGTTTCAAAA CACTTAGAAA ATCTGAAATT GGGTACTGAA AATCGACTCT CTGAACTTCG 7108 |||||||||| |||||||||| ||||||||| ||||||| || |||||||||| |||||||||| CGTTTCAAAA CACTTAGAAA TTCTGAAATT GGGTACTAAA AATCGACTCT CTGAACTTCG 296 TGACGGAATG GCAGGACGGA CCGTCACAGG CGTGACGGAC CGTCACAGAG CCTTCAGTGA 7048 | |||||||| ||| |||||| ||||||| || |||||||||| ||||||||| ||| ||| TAACGGAATG GCACGACGGA CCGTCACGGG CGTGACGGAC CGTCACAGAC TCTTTGGTGG 356 AAACCCATTC TCTGAACCTT ACGACGACTT GCAGGACGGA CCGTCGTAGG CACGACGGGC 6988 ||| | || |||||||||| ||||||| | |||||||||| |||||| ||| |||||||||| AAATTGAGTC TCTGAACCTT GCGACGACCT GCAGGACGGA CCGTCGCAGG CACGACGGGC 416 CGTCGCAGGC TACGCAATCC CAGGCTGTGT CGGATTTCTG TTAATTTATT TAAGGGGCAT 6928 | || |||| | || ||||| ||| ||| || ||||||||| ||| || |||||| | | CATCACAGGT TGCGTAATCC CAGTCTGGGT CGGATTTCT- TTACACGTTT TAAGGGACGT 475 TTTGGACTAT TTCCTACTTT AATTATAAAG -TGGTGGGTT AATGTTAATA AGTCTAATTA 6869 ||||||||| |||||||||| |||||||||| | ||||||| ||||||||| |||||||||| TTTGGACTA- TTCCTACTTT AATTATAAAG TTAGTGGGTT TATGTTAATA AGTCTAATTA 534 CTTGGGGGTT AAAAGAGGTA ACCTTAAGTT AACTAGTGGG TTATCTTTTA TACTTAATTA 6809 | |||||||| |||||||||| ||||| ||| || ||||||| |||| | || | | ||| CCTGGGGGTT AAAAGAGGTA ACCTTGAGTA AATTAGTGGG TTAT-TATTC CA-TCTTTTA 592 TATGTTAATT A 6798 | | |||||| | T-TCTTAATT A 602 hqPGS_C06HBa0158P14.1-16-_SGN-E550127+ (7280 6798) ******************************************************************************** EST sequence 59 +strand 640 n (File: SGN-E398551+) 1 TTTTTTTTTT ATGAATTAGC TCAATGAAAA ATGAGTAAAT TTTTTATATT TTATGGCATA 61 ATTTTTTCAT TAATTCATGG TTGAGAAAAT CTTTGTTTCT AATAGTGTTA TAAATCGTAA 121 AATAATAATA ATATTTAAGT AGGAAGAACA TAAATGTAAC GACCTGTTTA GTCGTTTTGA 181 GTAGCAGATT TTATTTTTGG AAAAACAGGT TGAGACGACG GAACCCACGA CGGACCGTCA 241 TGAGCACGAT GGACCGTCGA GGAGTCTCGT TTCAAAACAC TTAGAAATTC TGAAATTGGG 301 TACTAAAAAT CGACTCTCTG AACTTCGTAA CGGAATGGCA CGACGGACCG TCACGGGCGT 361 GACGGACCGT CACAGACTCT TTGGTGGAAA TTGAGTCTCT GAACCTTGCG ACGACCTGCA 421 GGACGGACCG TCGCAGGCAC GACGGGCCAT CACAGGTTGC GTAATCCCAG TCTGGGTCGG 481 ATTTCTTTAC ACGTTTTAAG GGACGTTTTG GACTATTCCT ACTTTAATTA TAAAGTTAGT 541 GGGTTTATGT TAATAAGTCT AATTACCTGG GGGTTAAAAG AGGTAACCTT GAGTAAATTA 601 TTGGGTTATT ATTCCATCTT TTATTCTTAA TTATATGCTA Predicted gene structure (within gDNA segment 9099 to 5734): Exon 1 9099 9072 ( 28 n); cDNA 87 113 ( 27 n); score: 0.679 Intron 1 9071 9027 ( 45 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.67) Exon 2 9026 8986 ( 41 n); cDNA 114 154 ( 41 n); score: 0.671 Intron 2 8985 7281 (1705 n); Pd: 0.000 (s: 0.67), Pa: 0.000 (s: 0.94) Exon 3 7280 6798 ( 483 n); cDNA 155 633 ( 479 n); score: 0.864 PPA cDNA 12 1 MATCH C06HBa0158P14.1-16- SGN-E398551+ 0.864 552 0.863 C PGS_C06HBa0158P14.1-16-_SGN-E398551+ (9099 9072,9026 8986,7280 6798) Alignment (genomic DNA sequence = upper lines): AAATTTATAA TTTATAATAT TTTTTTTATT TAAATTTTTT AATTTAAAAT ATCAAATTAA 9040 |||| | | ||| ||||| | || | | AAATCT-TTG TTTCTAATAG TGTTATAA.. .......... .......... .......... 113 TATAATCTAT TTTAACTTTA AAAAATAATA A-ATTTAACT TTCGAAAAAT ATAATATAAC 8981 | | | | || ||||||| | |||||| | ||| || |||| .......... ...ATCGTAA AATAATAATA ATATTTAA-G TAGGAAGAAC ATAAA..... 154 AACTAAAAAA AACCAATGAA ATAACATTCA TTAAAGTTAT AGCAGTGTAT TTTATTTTAC 8921 .......... .......... .......... .......... .......... .......... 154 CTGCTCCTTA TTGTAAAAGC AATTTATTTT TTTACATTTG TTCATAAAAA AAATAATTTA 8861 .......... .......... .......... .......... .......... .......... 154 TTACTAGTTC TTTTCAACAG TTTATATATC AAATTTAAGA AAAAAGGTAA TGGATCGTTA 8801 .......... .......... .......... .......... .......... .......... 154 TAGAGGCCCC TTTAATTTCA GCCCCCTATT TATTTATTTT TACATATGTA TACATTATAC 8741 .......... .......... .......... .......... .......... .......... 154 TCTTTTGTTT TAATGTATAT AATGATGTTT TAATTTTATG AGTCAAATGA GTTACCTTTT 8681 .......... .......... .......... .......... .......... .......... 154 ACTATAATAT TTTATATTAT TAACTATTGT GACTTCAATA CTTATTATAT AGTTTCAAAC 8621 .......... .......... .......... .......... .......... .......... 154 ATATAAATTT TATTTTTAAA AATTTATATT TAAGCATACA ATCAAAGTTC AAAAGTTCTT 8561 .......... .......... .......... .......... .......... .......... 154 ATCCCCAAAA GTGAAAAATA ACATATAATT CGATATACAG AGAGTATTTA AATTTGGGCA 8501 .......... .......... .......... .......... .......... .......... 154 ACTTTCACAT ATAGCAAATA AAAAATTCAT ATTTGTATGC TATAGCAAAG TTTGCATAAT 8441 .......... .......... .......... .......... .......... .......... 154 TGCGCTCAAT AGCAAACATT GAAACTGTAT AATTCGCTAT ACATATACAT TTGAAGCAAA 8381 .......... .......... .......... .......... .......... .......... 154 TTGTATAAAA CAGAGTGCAT AAAACAAGAA AGAGAAAGAC ACTTGGGCAG AGAACTGTAT 8321 .......... .......... .......... .......... .......... .......... 154 AAAAATGATA TGTATAAAAC GAATTGTATT ATTATAAGTG TATAGAATAA TTATATACAA 8261 .......... .......... .......... .......... .......... .......... 154 TTTGAATTTG TATAAAATGA GAAAGAGAGA AAGACAAAAG AGACTTGACA AGGAATATAC 8201 .......... .......... .......... .......... .......... .......... 154 AATTGAATCG AATTGTATAA AATGAGAAAG AGAGAAATTA GATACAATTT GAAAATTGTA 8141 .......... .......... .......... .......... .......... .......... 154 TAAAATGAGA AAGAGAGAAA GGCAAAAGAA ATTGCGCAGG GGAGTATTTA TTGTATAATT 8081 .......... .......... .......... .......... .......... .......... 154 ATAAGTGTAT AGGACGAAAA TATATGTACT TGCAAGTGTA TATACAATTT TCTCACGCTT 8021 .......... .......... .......... .......... .......... .......... 154 TATACAAACA AAAACACAAT TTATACACTT CACTTCTGTT TGTATAAGTG AGAAAGGCGG 7961 .......... .......... .......... .......... .......... .......... 154 GGGTGGCGAG CAAGATTTGG GAGAGTGGCG AGCGAGATCT GGAAGAGGGG AGAGAGGAGA 7901 .......... .......... .......... .......... .......... .......... 154 ACAAAAATAT ATGTATTTAT ACAATTTTCT CTACTTTATC AATTATAAAC AATTTTTATA 7841 .......... .......... .......... .......... .......... .......... 154 CACTTCTGTT TGTATAAAAA GTGAGGAAGC GAACGAGAGA TTAGAGGAGA GTAGCGAGCG 7781 .......... .......... .......... .......... .......... .......... 154 AGATATTTGG GAGAGAGGCG CCTGACAATT TTTTTGCAAA CGTTAGCTAT GGAGCACAAT 7721 .......... .......... .......... .......... .......... .......... 154 TAAATCAAAC CCTAGCTACT CCATTTATTT TAGGTTATTA GTTTGCTATT ATATAAGATT 7661 .......... .......... .......... .......... .......... .......... 154 TTGTCTATAT AATTTTTTTT CATACTATAG GTAAACTTCT TTGATTGTTA GATTTAAAAT 7601 .......... .......... .......... .......... .......... .......... 154 CTTGAAATAA AATAGGTACC TTCTACATTA TATAAATATG ACCCTAATGC TACAAAATTA 7541 .......... .......... .......... .......... .......... .......... 154 TTTGGCTAAA AAATTATTTG GTCCAATATA TTCCTATTTG TTGAAATGAT TTCCCTACTT 7481 .......... .......... .......... .......... .......... .......... 154 AATAATTGAC ACTAGATCTT GCCTTGTGTT ATAATTGAAG ATATATTTGA TACCACATGC 7421 .......... .......... .......... .......... .......... .......... 154 CTATTTTAAT CAAAGTTGTA TTTAAAATTC TGATTCCACG TTCGTTACAG TTAAACTTTT 7361 .......... .......... .......... .......... .......... .......... 154 TTAGTTTATT TTTAAAAAAA AGATAGTTTA TTAAGGATTT TCTTCCCTTC TTCTACCTTG 7301 .......... .......... .......... .......... .......... .......... 154 TTGTCCGATA ATATATAGCT TGTAACGACC TGTTTAGTCA TTTTGAGCAG CAGATTTTAT 7241 |||||||||| ||||||||| ||||||| || |||||||||| .......... .......... TGTAACGACC TGTTTAGTCG TTTTGAGTAG CAGATTTTAT 194 TTCTGGAAAA ATAGGCTGAG GCAACGGATC CCACGACGGA CCGTCATGGG CACGACGGAC 7181 || ||||||| | ||| |||| | ||||| | |||||||||| |||||||| | ||||| |||| TTTTGGAAAA ACAGGTTGAG ACGACGGAAC CCACGACGGA CCGTCATGAG CACGATGGAC 254 CGTCGCAGGG TCTCGTTTCA AAACACTTAG AAAATCTGAA ATTGGGTACT GAAAATCGAC 7121 ||||| | | |||||||||| |||||||||| ||| |||||| |||||||||| ||||||||| CGTCGAGGAG TCTCGTTTCA AAACACTTAG AAATTCTGAA ATTGGGTACT AAAAATCGAC 314 TCTCTGAACT TCGTGACGGA ATGGCAGGAC GGACCGTCAC AGGCGTGACG GACCGTCACA 7061 |||||||||| |||| ||||| |||||| ||| |||||||||| ||||||||| |||||||||| TCTCTGAACT TCGTAACGGA ATGGCACGAC GGACCGTCAC GGGCGTGACG GACCGTCACA 374 GAGCCTTCAG TGAAAACCCA TTCTCTGAAC CTTACGACGA CTTGCAGGAC GGACCGTCGT 7001 || ||| | || ||| | ||||||||| ||| |||||| | |||||||| ||||||||| GACTCTTTGG TGGAAATTGA GTCTCTGAAC CTTGCGACGA CCTGCAGGAC GGACCGTCGC 434 AGGCACGACG GGCCGTCGCA GGCTACGCAA TCCCAGGCTG TGTCGGATTT CTGTTAATTT 6941 |||||||||| |||| || || || | || || |||||| ||| ||||||||| || ||| AGGCACGACG GGCCATCACA GGTTGCGTAA TCCCAGTCTG GGTCGGATTT CT-TTACACG 493 ATTTAAGGGG CATTTTGGAC TATTTCCTAC TTTAATTATA AAG-TGGTGG GTTAATGTTA 6882 |||||||| | |||||||| || ||||||| |||||||||| ||| | |||| ||| |||||| TTTTAAGGGA CGTTTTGGAC TA-TTCCTAC TTTAATTATA AAGTTAGTGG GTTTATGTTA 552 ATAAGTCTAA TTACTTGGGG GTTAAAAGAG GTAACCTTAA GTTAACTAGT GGGTTATCTT 6822 |||||||||| |||| ||||| |||||||||| |||||||| | || || || | ||||||| | ATAAGTCTAA TTACCTGGGG GTTAAAAGAG GTAACCTTGA GTAAATTATT GGGTTAT-TA 611 TTATACTTAA TTATATGTTA ATTA 6798 || | | |||| | ||| |||| TTCCA-TCTT TTAT-TCTTA ATTA 633 hqPGS_C06HBa0158P14.1-16-_SGN-E398551+ (7280 6798) ******************************************************************************** EST sequence 58 +strand 630 n (File: SGN-E396038+) 1 TTTTTTTTTT ATTATTTAAC TCTATGAAAA ATGAGTAAAT TTTTTATATT TTATGGCATA 61 ATTTTTTCAT TAATTCATGG TTGAGAAAAT CTTTGTTTCT AATAGTGTTA TAAATCGTAA 121 AATAATAATA ATATTTAAGT AGGAAGAACA TAAATGTAAC GACCTGTTTA GTCGTTTTGA 181 GTAGCAGATT TTATTTTTGG AAAAACAGGT TGAGACGACG GAACCCACGA CGGACCGTCA 241 TGAGCACGAT GGACCGTCGA GGAGTCTCGT TTCAAAACAC TTAGAAATTC TGAAATTGGG 301 TACTAAAAAT CGACTCTCTG AACTTCGTAA CGGAATGGCA CGACGGACCG TCACGGGCGT 361 GACGGACCGT CACAGACTCT TTGGTGGAAA TTGAGTCTCT GAACCTTGCG ACGACCTGCA 421 GGACGGACCG TCGCAGGCAC GACGGGCCAT CACAGGTTGC GTAATCCCAG TCTGGGTCGG 481 ATTTCTTTAC ACGTTTTAAG GGACGTTTTG GACTATTCCT ACTTTAATTA TAAAGTTAGT 541 GGGTTTATGT TAATAAGTCT AATTACCTGG GGGTTAAAAG AGGTAACCTT GAGTAAATTA 601 GTGGGTTATT ATTCCATCTT TTATTCTTAA Predicted gene structure (within gDNA segment 9099 to 5834): Exon 1 9099 9072 ( 28 n); cDNA 87 113 ( 27 n); score: 0.679 Intron 1 9071 9027 ( 45 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.67) Exon 2 9026 8986 ( 41 n); cDNA 114 154 ( 41 n); score: 0.671 Intron 2 8985 7281 (1705 n); Pd: 0.000 (s: 0.67), Pa: 0.000 (s: 0.94) Exon 3 7280 6801 ( 480 n); cDNA 155 630 ( 476 n); score: 0.866 PPA cDNA 10 1 MATCH C06HBa0158P14.1-16- SGN-E396038+ 0.866 549 0.871 C PGS_C06HBa0158P14.1-16-_SGN-E396038+ (9099 9072,9026 8986,7280 6801) Alignment (genomic DNA sequence = upper lines): AAATTTATAA TTTATAATAT TTTTTTTATT TAAATTTTTT AATTTAAAAT ATCAAATTAA 9040 |||| | | ||| ||||| | || | | AAATCT-TTG TTTCTAATAG TGTTATAA.. .......... .......... .......... 113 TATAATCTAT TTTAACTTTA AAAAATAATA A-ATTTAACT TTCGAAAAAT ATAATATAAC 8981 | | | | || ||||||| | |||||| | ||| || |||| .......... ...ATCGTAA AATAATAATA ATATTTAA-G TAGGAAGAAC ATAAA..... 154 AACTAAAAAA AACCAATGAA ATAACATTCA TTAAAGTTAT AGCAGTGTAT TTTATTTTAC 8921 .......... .......... .......... .......... .......... .......... 154 CTGCTCCTTA TTGTAAAAGC AATTTATTTT TTTACATTTG TTCATAAAAA AAATAATTTA 8861 .......... .......... .......... .......... .......... .......... 154 TTACTAGTTC TTTTCAACAG TTTATATATC AAATTTAAGA AAAAAGGTAA TGGATCGTTA 8801 .......... .......... .......... .......... .......... .......... 154 TAGAGGCCCC TTTAATTTCA GCCCCCTATT TATTTATTTT TACATATGTA TACATTATAC 8741 .......... .......... .......... .......... .......... .......... 154 TCTTTTGTTT TAATGTATAT AATGATGTTT TAATTTTATG AGTCAAATGA GTTACCTTTT 8681 .......... .......... .......... .......... .......... .......... 154 ACTATAATAT TTTATATTAT TAACTATTGT GACTTCAATA CTTATTATAT AGTTTCAAAC 8621 .......... .......... .......... .......... .......... .......... 154 ATATAAATTT TATTTTTAAA AATTTATATT TAAGCATACA ATCAAAGTTC AAAAGTTCTT 8561 .......... .......... .......... .......... .......... .......... 154 ATCCCCAAAA GTGAAAAATA ACATATAATT CGATATACAG AGAGTATTTA AATTTGGGCA 8501 .......... .......... .......... .......... .......... .......... 154 ACTTTCACAT ATAGCAAATA AAAAATTCAT ATTTGTATGC TATAGCAAAG TTTGCATAAT 8441 .......... .......... .......... .......... .......... .......... 154 TGCGCTCAAT AGCAAACATT GAAACTGTAT AATTCGCTAT ACATATACAT TTGAAGCAAA 8381 .......... .......... .......... .......... .......... .......... 154 TTGTATAAAA CAGAGTGCAT AAAACAAGAA AGAGAAAGAC ACTTGGGCAG AGAACTGTAT 8321 .......... .......... .......... .......... .......... .......... 154 AAAAATGATA TGTATAAAAC GAATTGTATT ATTATAAGTG TATAGAATAA TTATATACAA 8261 .......... .......... .......... .......... .......... .......... 154 TTTGAATTTG TATAAAATGA GAAAGAGAGA AAGACAAAAG AGACTTGACA AGGAATATAC 8201 .......... .......... .......... .......... .......... .......... 154 AATTGAATCG AATTGTATAA AATGAGAAAG AGAGAAATTA GATACAATTT GAAAATTGTA 8141 .......... .......... .......... .......... .......... .......... 154 TAAAATGAGA AAGAGAGAAA GGCAAAAGAA ATTGCGCAGG GGAGTATTTA TTGTATAATT 8081 .......... .......... .......... .......... .......... .......... 154 ATAAGTGTAT AGGACGAAAA TATATGTACT TGCAAGTGTA TATACAATTT TCTCACGCTT 8021 .......... .......... .......... .......... .......... .......... 154 TATACAAACA AAAACACAAT TTATACACTT CACTTCTGTT TGTATAAGTG AGAAAGGCGG 7961 .......... .......... .......... .......... .......... .......... 154 GGGTGGCGAG CAAGATTTGG GAGAGTGGCG AGCGAGATCT GGAAGAGGGG AGAGAGGAGA 7901 .......... .......... .......... .......... .......... .......... 154 ACAAAAATAT ATGTATTTAT ACAATTTTCT CTACTTTATC AATTATAAAC AATTTTTATA 7841 .......... .......... .......... .......... .......... .......... 154 CACTTCTGTT TGTATAAAAA GTGAGGAAGC GAACGAGAGA TTAGAGGAGA GTAGCGAGCG 7781 .......... .......... .......... .......... .......... .......... 154 AGATATTTGG GAGAGAGGCG CCTGACAATT TTTTTGCAAA CGTTAGCTAT GGAGCACAAT 7721 .......... .......... .......... .......... .......... .......... 154 TAAATCAAAC CCTAGCTACT CCATTTATTT TAGGTTATTA GTTTGCTATT ATATAAGATT 7661 .......... .......... .......... .......... .......... .......... 154 TTGTCTATAT AATTTTTTTT CATACTATAG GTAAACTTCT TTGATTGTTA GATTTAAAAT 7601 .......... .......... .......... .......... .......... .......... 154 CTTGAAATAA AATAGGTACC TTCTACATTA TATAAATATG ACCCTAATGC TACAAAATTA 7541 .......... .......... .......... .......... .......... .......... 154 TTTGGCTAAA AAATTATTTG GTCCAATATA TTCCTATTTG TTGAAATGAT TTCCCTACTT 7481 .......... .......... .......... .......... .......... .......... 154 AATAATTGAC ACTAGATCTT GCCTTGTGTT ATAATTGAAG ATATATTTGA TACCACATGC 7421 .......... .......... .......... .......... .......... .......... 154 CTATTTTAAT CAAAGTTGTA TTTAAAATTC TGATTCCACG TTCGTTACAG TTAAACTTTT 7361 .......... .......... .......... .......... .......... .......... 154 TTAGTTTATT TTTAAAAAAA AGATAGTTTA TTAAGGATTT TCTTCCCTTC TTCTACCTTG 7301 .......... .......... .......... .......... .......... .......... 154 TTGTCCGATA ATATATAGCT TGTAACGACC TGTTTAGTCA TTTTGAGCAG CAGATTTTAT 7241 |||||||||| ||||||||| ||||||| || |||||||||| .......... .......... TGTAACGACC TGTTTAGTCG TTTTGAGTAG CAGATTTTAT 194 TTCTGGAAAA ATAGGCTGAG GCAACGGATC CCACGACGGA CCGTCATGGG CACGACGGAC 7181 || ||||||| | ||| |||| | ||||| | |||||||||| |||||||| | ||||| |||| TTTTGGAAAA ACAGGTTGAG ACGACGGAAC CCACGACGGA CCGTCATGAG CACGATGGAC 254 CGTCGCAGGG TCTCGTTTCA AAACACTTAG AAAATCTGAA ATTGGGTACT GAAAATCGAC 7121 ||||| | | |||||||||| |||||||||| ||| |||||| |||||||||| ||||||||| CGTCGAGGAG TCTCGTTTCA AAACACTTAG AAATTCTGAA ATTGGGTACT AAAAATCGAC 314 TCTCTGAACT TCGTGACGGA ATGGCAGGAC GGACCGTCAC AGGCGTGACG GACCGTCACA 7061 |||||||||| |||| ||||| |||||| ||| |||||||||| ||||||||| |||||||||| TCTCTGAACT TCGTAACGGA ATGGCACGAC GGACCGTCAC GGGCGTGACG GACCGTCACA 374 GAGCCTTCAG TGAAAACCCA TTCTCTGAAC CTTACGACGA CTTGCAGGAC GGACCGTCGT 7001 || ||| | || ||| | ||||||||| ||| |||||| | |||||||| ||||||||| GACTCTTTGG TGGAAATTGA GTCTCTGAAC CTTGCGACGA CCTGCAGGAC GGACCGTCGC 434 AGGCACGACG GGCCGTCGCA GGCTACGCAA TCCCAGGCTG TGTCGGATTT CTGTTAATTT 6941 |||||||||| |||| || || || | || || |||||| ||| ||||||||| || ||| AGGCACGACG GGCCATCACA GGTTGCGTAA TCCCAGTCTG GGTCGGATTT CT-TTACACG 493 ATTTAAGGGG CATTTTGGAC TATTTCCTAC TTTAATTATA AAG-TGGTGG GTTAATGTTA 6882 |||||||| | |||||||| || ||||||| |||||||||| ||| | |||| ||| |||||| TTTTAAGGGA CGTTTTGGAC TA-TTCCTAC TTTAATTATA AAGTTAGTGG GTTTATGTTA 552 ATAAGTCTAA TTACTTGGGG GTTAAAAGAG GTAACCTTAA GTTAACTAGT GGGTTATCTT 6822 |||||||||| |||| ||||| |||||||||| |||||||| | || || |||| ||||||| | ATAAGTCTAA TTACCTGGGG GTTAAAAGAG GTAACCTTGA GTAAATTAGT GGGTTAT-TA 611 TTATACTTAA TTATATGTTA A 6801 || | | |||| | ||| | TTCCA-TCTT TTAT-TCTTA A 630 hqPGS_C06HBa0158P14.1-16-_SGN-E396038+ (7280 6801) ******************************************************************************** EST sequence 69 +strand 548 n (File: SGN-E356257+) 1 AAAACACTTA GAAAATCTGA AATTGGGTAC TGAAAATCGA CTCTCTGAAC TTCGTGACGG 61 AATGACAGGA CGGACCATCA CAGGCGTGAC GGACCGTCAT AGATTGTTCA GTGGAAATTG 121 ACTCTCTGAC CCTTGCGACG ACCTGCAGGA CGGACCGTCA CAGTCACGAC GGCCCGTCAC 181 AGGTTGCGCA AATCCCAGGC AGAATCGGAT TTCCTTACAC GTTTTAAGGG ACGTTTTTGG 241 ACTATTCTTT CCTTAATTAT AGATTTCGTG GGTTTATATT AATAACTCAA ATTCTTGGGG 301 TTAAAAGAGG TAACCCTAAG TTAATTAGTG GGGTATTATT GCCATCTTTT ATTCTTAATT 361 ATATGTTAAT TTGGGGTAAA AGAAAGAGGG TTTTGAAACG AGACCCTGCG ATGGTCCGTC 421 GTGCCCATGA CGGTCCGTCG TGGGGTCCGT CGCTTCTGCC AGTTTTTCCA GAAATAAAGT 481 CTGCTGCTCA AAACGACTAA ACGGGTCGTT ACATTATTTG ACTCTATCAC TTTAATTTTC 541 TAGTTAAC Predicted gene structure (within gDNA segment 7761 to 4009): Exon 1 7161 6820 ( 342 n); cDNA 1 340 ( 340 n); score: 0.829 Intron 1 6819 5821 ( 999 n); Pd: 0.000 (s: 0.86), Pa: 0.000 (s: 0.65) Exon 2 5820 5775 ( 46 n); cDNA 341 385 ( 45 n); score: 0.652 MATCH C06HBa0158P14.1-16- SGN-E356257+ 0.829 388 0.708 C PGS_C06HBa0158P14.1-16-_SGN-E356257+ (7161 6820,5820 5775) Alignment (genomic DNA sequence = upper lines): AAAACACTTA GAAAATCTGA AATTGGGTAC TGAAAATCGA CTCTCTGAAC TTCGTGACGG 7102 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAACACTTA GAAAATCTGA AATTGGGTAC TGAAAATCGA CTCTCTGAAC TTCGTGACGG 60 AATGGCAGGA CGGACCGTCA CAGGCGTGAC GGACCGTCAC AGAGCCTTCA GTGAAAACCC 7042 |||| ||||| |||||| ||| |||||||||| ||||||||| ||| |||| ||| ||| AATGACAGGA CGGACCATCA CAGGCGTGAC GGACCGTCAT AGATTGTTCA GTGGAAATTG 120 ATTCTCTGAA CCTTACGACG ACTTGCAGGA CGGACCGTCG TAGGCACGAC GGGCCGTCGC 6982 | ||||||| |||| ||||| || ||||||| ||||||||| || |||||| || ||||| | ACTCTCTGAC CCTTGCGACG ACCTGCAGGA CGGACCGTCA CAGTCACGAC GGCCCGTCAC 180 AGGCTACGC- AATCCCAGGC TGTGTCGGAT TTCTGTTAAT TTATTTAAGG GGC-ATTTTG 6924 ||| | ||| |||||||||| | |||||| ||| ||| ||||||| | | ||||| AGGTTGCGCA AATCCCAGGC AGAATCGGAT TTC-CTTACA CGTTTTAAGG GACGTTTTTG 239 GACTATTTCC TACTTTAATT ATA-AAGTGG TGGGTTAATG TTAATAAGTC TAATTACTTG 6865 ||||| ||| | | |||||| ||| | | | |||||| || ||||||| || |||| ||| GACTA-TTCT TTCCTTAATT ATAGATTTCG TGGGTTTATA TTAATAACTC AAATT-CTT- 296 GGGGTTAAAA GAGGTAACCT TAAGTTAACT AGTGGGTTAT CTTTTATACT TAATTATATG 6805 |||||||||| ||||||||| |||||||| | |||||| ||| | || GGGGTTAAAA GAGGTAACCC TAAGTTAATT AGTGGGGTAT -TATT..... .......... 340 TTAATTAGGG TAAAAGAAAG AGGGTTGGAA TAAGAAAAAT AAGAAAGAAC AAAGAGAGAC 6745 .......... .......... .......... .......... .......... .......... 340 AGAAAAAGAA AGAAAACGAG TAGAGAGAGA GAGAAACGAA GGGAATATCA AGGATTTTGA 6685 .......... .......... .......... .......... .......... .......... 340 GAAGATAGCT TGTTGATCGC AATTCTTCGG TGGAGGTAGG TTATGGTTAT TTCATGCTAT 6625 .......... .......... .......... .......... .......... .......... 340 TCGTAGTAAA CTCTTAATAG CGAATGATAT GTGTTAGTAG TATTGTGAAC CTTCTATATG 6565 .......... .......... .......... .......... .......... .......... 340 CTTAATTGTA TGCTTGCATG AATGATGTGA TTATGTAATT ATGAATAAAT AAGCATGATG 6505 .......... .......... .......... .......... .......... .......... 340 AAGCTATTTA ATCCCAAATC TTGAAAAGAA ACCATAATCT ACTTTGTTAA TGATGATGCC 6445 .......... .......... .......... .......... .......... .......... 340 TTGGTATAAA AGAAGGCTTG ATGAATGAAA GTAGTGAGAT TAGGGGATCG GGTGCCACGT 6385 .......... .......... .......... .......... .......... .......... 340 TCCGGTACCA GGATAGTATA TGAGGATCGG AGTATCACGT TCCGACACCA GGATAATATA 6325 .......... .......... .......... .......... .......... .......... 340 TGGATCGGGT GCCACGTTCC GGTACCAGGA TAGAATATGG ATCGGGTGTC ACGTTCCAAC 6265 .......... .......... .......... .......... .......... .......... 340 ACCAGGATAG AATATGGATC GGGTGCCACG TTCCGGTACC AGGGTAGAAT ATGGATCGGG 6205 .......... .......... .......... .......... .......... .......... 340 TGTCACGTTC CGACACCAGG ATAGAATATG GATCGGGTGC CACGTTCCGG TACCAGGATA 6145 .......... .......... .......... .......... .......... .......... 340 ATATATGAGG ATCGGAGTGT CACGTTCCGA CACCAGGATA GTATATTGAG GAGCGGAGTG 6085 .......... .......... .......... .......... .......... .......... 340 TCACGTACCG ACACGAGGGG AATAAAGATA ATGAATTTTG AAAGATGTTA ATATGTTCAA 6025 .......... .......... .......... .......... .......... .......... 340 TCTAATGAAC CTAATTCCCA AATGAGTATG ATGAGGAGGC GTGAGTCCTC ATTGATGTGC 5965 .......... .......... .......... .......... .......... .......... 340 TTGGTGTTGC AACCAAGGGT TATGGTAACT GTAAATGCTG CATGCTAAGG ATATTAGTTG 5905 .......... .......... .......... .......... .......... .......... 340 ATTTTATGAT ATTGCTTAAC ATATACTGTT TTCTATTTTG AGTTGGCCGA TGATATCTAC 5845 .......... .......... .......... .......... .......... .......... 340 TCAGTACCCG TGTTTTGTAC TGACCCCTAC TTTTATGTTT TCTTCTTTGT TATTTGTGGA 5785 || | |||||| || || | ||| || || ||| .......... .......... ....GCCATC TTTTATTCTT AATTATATGT TAATT-TGGG 375 GTGCAGCAAA 5775 || | ||| GTAAAAGAAA 385 hqPGS_C06HBa0158P14.1-16-_SGN-E356257+ (7161 6820) ******************************************************************************** EST sequence 61 +strand 674 n (File: SGN-E396057+) 1 TTTTTTTTTT ATGAATTAGC TCAATGAAAA ATGAGTAAAT TTTTTATATT TTATGGCATA 61 ATTTTTTCAT TAATTCATGG TTGAGAAAAT CTTTGTTTCT AATAGTGTTA TAAATCGTAA 121 AATAATAATA ATATTTAAGT AGGAAGAACA TAAATGTAAC GACCTGTTTA GTCGTTTTGA 181 GTAGCAGATT TTATTTTTGG AAAAACAGGT TGAGACGACG GAACCCACGA CGGACCGTCA 241 TGAGCACGAT GGACCGTCGA GGAGTCTCGT TTCAAAACAC TTAAAAATTC TGAAATTGGG 301 TACTAAAAAT CGACTCTCTG AACTTCGTAA CGGAATGGCA CGACGGACCG TCACGGGCGT 361 GACGGACCGT CACAGACTCT TTGGTGGAAA TTGAGTCTCT GAACCTTGCG ACGACCTGCA 421 GGACGGACCG TCGCAGGCAC GACGGGCCAT CACAGGTTGC GTAATCCCAG TCTGGGTCGG 481 ATTTCTTTAC ACGTTTTAAG GGACGTTTTG GACTATTCCT ACTTTAATTA TAAAGTTAGT 541 GGGTTTATGT TAATAAGTCT AATTACCTGG GGGTTAAAAG AGGTAACCTT GAGTAAATTA 601 GTGGGTTATT ATTCCATCTT TTATTCTTAA TTATATGCTA ATTAGGGTAA AAAAAAGAAG 661 GTTTGAATAA AAAA Predicted gene structure (within gDNA segment 9099 to 5394): Exon 1 9099 9072 ( 28 n); cDNA 87 113 ( 27 n); score: 0.679 Intron 1 9071 9027 ( 45 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.67) Exon 2 9026 8986 ( 41 n); cDNA 114 154 ( 41 n); score: 0.671 Intron 2 8985 7281 (1705 n); Pd: 0.000 (s: 0.67), Pa: 0.000 (s: 0.94) Exon 3 7280 6827 ( 454 n); cDNA 155 607 ( 453 n); score: 0.878 PPA cDNA 649 659 MATCH C06HBa0158P14.1-16- SGN-E396057+ 0.878 523 0.776 C PGS_C06HBa0158P14.1-16-_SGN-E396057+ (9099 9072,9026 8986,7280 6827) Alignment (genomic DNA sequence = upper lines): AAATTTATAA TTTATAATAT TTTTTTTATT TAAATTTTTT AATTTAAAAT ATCAAATTAA 9040 |||| | | ||| ||||| | || | | AAATCT-TTG TTTCTAATAG TGTTATAA.. .......... .......... .......... 113 TATAATCTAT TTTAACTTTA AAAAATAATA A-ATTTAACT TTCGAAAAAT ATAATATAAC 8981 | | | | || ||||||| | |||||| | ||| || |||| .......... ...ATCGTAA AATAATAATA ATATTTAA-G TAGGAAGAAC ATAAA..... 154 AACTAAAAAA AACCAATGAA ATAACATTCA TTAAAGTTAT AGCAGTGTAT TTTATTTTAC 8921 .......... .......... .......... .......... .......... .......... 154 CTGCTCCTTA TTGTAAAAGC AATTTATTTT TTTACATTTG TTCATAAAAA AAATAATTTA 8861 .......... .......... .......... .......... .......... .......... 154 TTACTAGTTC TTTTCAACAG TTTATATATC AAATTTAAGA AAAAAGGTAA TGGATCGTTA 8801 .......... .......... .......... .......... .......... .......... 154 TAGAGGCCCC TTTAATTTCA GCCCCCTATT TATTTATTTT TACATATGTA TACATTATAC 8741 .......... .......... .......... .......... .......... .......... 154 TCTTTTGTTT TAATGTATAT AATGATGTTT TAATTTTATG AGTCAAATGA GTTACCTTTT 8681 .......... .......... .......... .......... .......... .......... 154 ACTATAATAT TTTATATTAT TAACTATTGT GACTTCAATA CTTATTATAT AGTTTCAAAC 8621 .......... .......... .......... .......... .......... .......... 154 ATATAAATTT TATTTTTAAA AATTTATATT TAAGCATACA ATCAAAGTTC AAAAGTTCTT 8561 .......... .......... .......... .......... .......... .......... 154 ATCCCCAAAA GTGAAAAATA ACATATAATT CGATATACAG AGAGTATTTA AATTTGGGCA 8501 .......... .......... .......... .......... .......... .......... 154 ACTTTCACAT ATAGCAAATA AAAAATTCAT ATTTGTATGC TATAGCAAAG TTTGCATAAT 8441 .......... .......... .......... .......... .......... .......... 154 TGCGCTCAAT AGCAAACATT GAAACTGTAT AATTCGCTAT ACATATACAT TTGAAGCAAA 8381 .......... .......... .......... .......... .......... .......... 154 TTGTATAAAA CAGAGTGCAT AAAACAAGAA AGAGAAAGAC ACTTGGGCAG AGAACTGTAT 8321 .......... .......... .......... .......... .......... .......... 154 AAAAATGATA TGTATAAAAC GAATTGTATT ATTATAAGTG TATAGAATAA TTATATACAA 8261 .......... .......... .......... .......... .......... .......... 154 TTTGAATTTG TATAAAATGA GAAAGAGAGA AAGACAAAAG AGACTTGACA AGGAATATAC 8201 .......... .......... .......... .......... .......... .......... 154 AATTGAATCG AATTGTATAA AATGAGAAAG AGAGAAATTA GATACAATTT GAAAATTGTA 8141 .......... .......... .......... .......... .......... .......... 154 TAAAATGAGA AAGAGAGAAA GGCAAAAGAA ATTGCGCAGG GGAGTATTTA TTGTATAATT 8081 .......... .......... .......... .......... .......... .......... 154 ATAAGTGTAT AGGACGAAAA TATATGTACT TGCAAGTGTA TATACAATTT TCTCACGCTT 8021 .......... .......... .......... .......... .......... .......... 154 TATACAAACA AAAACACAAT TTATACACTT CACTTCTGTT TGTATAAGTG AGAAAGGCGG 7961 .......... .......... .......... .......... .......... .......... 154 GGGTGGCGAG CAAGATTTGG GAGAGTGGCG AGCGAGATCT GGAAGAGGGG AGAGAGGAGA 7901 .......... .......... .......... .......... .......... .......... 154 ACAAAAATAT ATGTATTTAT ACAATTTTCT CTACTTTATC AATTATAAAC AATTTTTATA 7841 .......... .......... .......... .......... .......... .......... 154 CACTTCTGTT TGTATAAAAA GTGAGGAAGC GAACGAGAGA TTAGAGGAGA GTAGCGAGCG 7781 .......... .......... .......... .......... .......... .......... 154 AGATATTTGG GAGAGAGGCG CCTGACAATT TTTTTGCAAA CGTTAGCTAT GGAGCACAAT 7721 .......... .......... .......... .......... .......... .......... 154 TAAATCAAAC CCTAGCTACT CCATTTATTT TAGGTTATTA GTTTGCTATT ATATAAGATT 7661 .......... .......... .......... .......... .......... .......... 154 TTGTCTATAT AATTTTTTTT CATACTATAG GTAAACTTCT TTGATTGTTA GATTTAAAAT 7601 .......... .......... .......... .......... .......... .......... 154 CTTGAAATAA AATAGGTACC TTCTACATTA TATAAATATG ACCCTAATGC TACAAAATTA 7541 .......... .......... .......... .......... .......... .......... 154 TTTGGCTAAA AAATTATTTG GTCCAATATA TTCCTATTTG TTGAAATGAT TTCCCTACTT 7481 .......... .......... .......... .......... .......... .......... 154 AATAATTGAC ACTAGATCTT GCCTTGTGTT ATAATTGAAG ATATATTTGA TACCACATGC 7421 .......... .......... .......... .......... .......... .......... 154 CTATTTTAAT CAAAGTTGTA TTTAAAATTC TGATTCCACG TTCGTTACAG TTAAACTTTT 7361 .......... .......... .......... .......... .......... .......... 154 TTAGTTTATT TTTAAAAAAA AGATAGTTTA TTAAGGATTT TCTTCCCTTC TTCTACCTTG 7301 .......... .......... .......... .......... .......... .......... 154 TTGTCCGATA ATATATAGCT TGTAACGACC TGTTTAGTCA TTTTGAGCAG CAGATTTTAT 7241 |||||||||| ||||||||| ||||||| || |||||||||| .......... .......... TGTAACGACC TGTTTAGTCG TTTTGAGTAG CAGATTTTAT 194 TTCTGGAAAA ATAGGCTGAG GCAACGGATC CCACGACGGA CCGTCATGGG CACGACGGAC 7181 || ||||||| | ||| |||| | ||||| | |||||||||| |||||||| | ||||| |||| TTTTGGAAAA ACAGGTTGAG ACGACGGAAC CCACGACGGA CCGTCATGAG CACGATGGAC 254 CGTCGCAGGG TCTCGTTTCA AAACACTTAG AAAATCTGAA ATTGGGTACT GAAAATCGAC 7121 ||||| | | |||||||||| ||||||||| ||| |||||| |||||||||| ||||||||| CGTCGAGGAG TCTCGTTTCA AAACACTTAA AAATTCTGAA ATTGGGTACT AAAAATCGAC 314 TCTCTGAACT TCGTGACGGA ATGGCAGGAC GGACCGTCAC AGGCGTGACG GACCGTCACA 7061 |||||||||| |||| ||||| |||||| ||| |||||||||| ||||||||| |||||||||| TCTCTGAACT TCGTAACGGA ATGGCACGAC GGACCGTCAC GGGCGTGACG GACCGTCACA 374 GAGCCTTCAG TGAAAACCCA TTCTCTGAAC CTTACGACGA CTTGCAGGAC GGACCGTCGT 7001 || ||| | || ||| | ||||||||| ||| |||||| | |||||||| ||||||||| GACTCTTTGG TGGAAATTGA GTCTCTGAAC CTTGCGACGA CCTGCAGGAC GGACCGTCGC 434 AGGCACGACG GGCCGTCGCA GGCTACGCAA TCCCAGGCTG TGTCGGATTT CTGTTAATTT 6941 |||||||||| |||| || || || | || || |||||| ||| ||||||||| || ||| AGGCACGACG GGCCATCACA GGTTGCGTAA TCCCAGTCTG GGTCGGATTT CT-TTACACG 493 ATTTAAGGGG CATTTTGGAC TATTTCCTAC TTTAATTATA AAG-TGGTGG GTTAATGTTA 6882 |||||||| | |||||||| || ||||||| |||||||||| ||| | |||| ||| |||||| TTTTAAGGGA CGTTTTGGAC TA-TTCCTAC TTTAATTATA AAGTTAGTGG GTTTATGTTA 552 ATAAGTCTAA TTACTTGGGG GTTAAAAGAG GTAACCTTAA GTTAACTAGT GGGTT 6827 |||||||||| |||| ||||| |||||||||| |||||||| | || || |||| ||||| ATAAGTCTAA TTACCTGGGG GTTAAAAGAG GTAACCTTGA GTAAATTAGT GGGTT 607 hqPGS_C06HBa0158P14.1-16-_SGN-E396057+ (7280 6827) ******************************************************************************** EST sequence 64 +strand 658 n (File: SGN-E377132+) 1 TTTTTTTTTA TGAATTAGCT CAATGAAAAA TGAGTAAATT TTTTATATTT TATGGCATAA 61 TTTTTTCATT AATTCATGGT TGAGAAAATC TTTGTTTCTA ATAGTGTTAT AAATCGTAAA 121 ATAATAATAA TATTTAAGTA GGAAGAACAT AAATGTAACG ACCTGTTTAG TCGTTTTGAG 181 TAGCAGATTT TATTTTTGGA AAAACAGGTT GAGACGACGG AACCCACGAC GGACCGTCAT 241 GAGCACGATG GACCGTCGAG GAGTCTCGTT TCAAAACACT TAGAAATTCT GAAATTGGGT 301 ACTAAAAATC GACTCTCTGA ACTTCGTAAC GGAATGGCAC GACGGACCGT CACGGGCGTG 361 ACGGACCGTC ACAGACTCTT TGGTGGAAAT TGAGTCTCTG AACCTTGCGA CGACCTGCAG 421 GACGGACCGT CGCAGGCACG ACGGGCCATC ACAGGTTGCG TAATCCCAGT CTGGGTCGGA 481 TTTCTTTACA CGTTTTAAGG GACGTTTTGG ACTATTCCTA CTTTAATTAT AAAGTTAGTG 541 GGTTTATGTT AATAAGTCTA ATTACCTGGG GGTTAAAAGA GGTAACCTTG AGTAAATTAG 601 TGGGTTATTA TTCCATCTTT TATTCTTAAA TATATGCTAA TTAGGGTAAA AGAAGGAA Predicted gene structure (within gDNA segment 9099 to 5544): Exon 1 9099 9072 ( 28 n); cDNA 86 112 ( 27 n); score: 0.679 Intron 1 9071 9027 ( 45 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.67) Exon 2 9026 8986 ( 41 n); cDNA 113 153 ( 41 n); score: 0.671 Intron 2 8985 7281 (1705 n); Pd: 0.000 (s: 0.67), Pa: 0.000 (s: 0.94) Exon 3 7280 6827 ( 454 n); cDNA 154 606 ( 453 n); score: 0.880 PPA cDNA 11 1 MATCH C06HBa0158P14.1-16- SGN-E377132+ 0.880 523 0.795 C PGS_C06HBa0158P14.1-16-_SGN-E377132+ (9099 9072,9026 8986,7280 6827) Alignment (genomic DNA sequence = upper lines): AAATTTATAA TTTATAATAT TTTTTTTATT TAAATTTTTT AATTTAAAAT ATCAAATTAA 9040 |||| | | ||| ||||| | || | | AAATCT-TTG TTTCTAATAG TGTTATAA.. .......... .......... .......... 112 TATAATCTAT TTTAACTTTA AAAAATAATA A-ATTTAACT TTCGAAAAAT ATAATATAAC 8981 | | | | || ||||||| | |||||| | ||| || |||| .......... ...ATCGTAA AATAATAATA ATATTTAA-G TAGGAAGAAC ATAAA..... 153 AACTAAAAAA AACCAATGAA ATAACATTCA TTAAAGTTAT AGCAGTGTAT TTTATTTTAC 8921 .......... .......... .......... .......... .......... .......... 153 CTGCTCCTTA TTGTAAAAGC AATTTATTTT TTTACATTTG TTCATAAAAA AAATAATTTA 8861 .......... .......... .......... .......... .......... .......... 153 TTACTAGTTC TTTTCAACAG TTTATATATC AAATTTAAGA AAAAAGGTAA TGGATCGTTA 8801 .......... .......... .......... .......... .......... .......... 153 TAGAGGCCCC TTTAATTTCA GCCCCCTATT TATTTATTTT TACATATGTA TACATTATAC 8741 .......... .......... .......... .......... .......... .......... 153 TCTTTTGTTT TAATGTATAT AATGATGTTT TAATTTTATG AGTCAAATGA GTTACCTTTT 8681 .......... .......... .......... .......... .......... .......... 153 ACTATAATAT TTTATATTAT TAACTATTGT GACTTCAATA CTTATTATAT AGTTTCAAAC 8621 .......... .......... .......... .......... .......... .......... 153 ATATAAATTT TATTTTTAAA AATTTATATT TAAGCATACA ATCAAAGTTC AAAAGTTCTT 8561 .......... .......... .......... .......... .......... .......... 153 ATCCCCAAAA GTGAAAAATA ACATATAATT CGATATACAG AGAGTATTTA AATTTGGGCA 8501 .......... .......... .......... .......... .......... .......... 153 ACTTTCACAT ATAGCAAATA AAAAATTCAT ATTTGTATGC TATAGCAAAG TTTGCATAAT 8441 .......... .......... .......... .......... .......... .......... 153 TGCGCTCAAT AGCAAACATT GAAACTGTAT AATTCGCTAT ACATATACAT TTGAAGCAAA 8381 .......... .......... .......... .......... .......... .......... 153 TTGTATAAAA CAGAGTGCAT AAAACAAGAA AGAGAAAGAC ACTTGGGCAG AGAACTGTAT 8321 .......... .......... .......... .......... .......... .......... 153 AAAAATGATA TGTATAAAAC GAATTGTATT ATTATAAGTG TATAGAATAA TTATATACAA 8261 .......... .......... .......... .......... .......... .......... 153 TTTGAATTTG TATAAAATGA GAAAGAGAGA AAGACAAAAG AGACTTGACA AGGAATATAC 8201 .......... .......... .......... .......... .......... .......... 153 AATTGAATCG AATTGTATAA AATGAGAAAG AGAGAAATTA GATACAATTT GAAAATTGTA 8141 .......... .......... .......... .......... .......... .......... 153 TAAAATGAGA AAGAGAGAAA GGCAAAAGAA ATTGCGCAGG GGAGTATTTA TTGTATAATT 8081 .......... .......... .......... .......... .......... .......... 153 ATAAGTGTAT AGGACGAAAA TATATGTACT TGCAAGTGTA TATACAATTT TCTCACGCTT 8021 .......... .......... .......... .......... .......... .......... 153 TATACAAACA AAAACACAAT TTATACACTT CACTTCTGTT TGTATAAGTG AGAAAGGCGG 7961 .......... .......... .......... .......... .......... .......... 153 GGGTGGCGAG CAAGATTTGG GAGAGTGGCG AGCGAGATCT GGAAGAGGGG AGAGAGGAGA 7901 .......... .......... .......... .......... .......... .......... 153 ACAAAAATAT ATGTATTTAT ACAATTTTCT CTACTTTATC AATTATAAAC AATTTTTATA 7841 .......... .......... .......... .......... .......... .......... 153 CACTTCTGTT TGTATAAAAA GTGAGGAAGC GAACGAGAGA TTAGAGGAGA GTAGCGAGCG 7781 .......... .......... .......... .......... .......... .......... 153 AGATATTTGG GAGAGAGGCG CCTGACAATT TTTTTGCAAA CGTTAGCTAT GGAGCACAAT 7721 .......... .......... .......... .......... .......... .......... 153 TAAATCAAAC CCTAGCTACT CCATTTATTT TAGGTTATTA GTTTGCTATT ATATAAGATT 7661 .......... .......... .......... .......... .......... .......... 153 TTGTCTATAT AATTTTTTTT CATACTATAG GTAAACTTCT TTGATTGTTA GATTTAAAAT 7601 .......... .......... .......... .......... .......... .......... 153 CTTGAAATAA AATAGGTACC TTCTACATTA TATAAATATG ACCCTAATGC TACAAAATTA 7541 .......... .......... .......... .......... .......... .......... 153 TTTGGCTAAA AAATTATTTG GTCCAATATA TTCCTATTTG TTGAAATGAT TTCCCTACTT 7481 .......... .......... .......... .......... .......... .......... 153 AATAATTGAC ACTAGATCTT GCCTTGTGTT ATAATTGAAG ATATATTTGA TACCACATGC 7421 .......... .......... .......... .......... .......... .......... 153 CTATTTTAAT CAAAGTTGTA TTTAAAATTC TGATTCCACG TTCGTTACAG TTAAACTTTT 7361 .......... .......... .......... .......... .......... .......... 153 TTAGTTTATT TTTAAAAAAA AGATAGTTTA TTAAGGATTT TCTTCCCTTC TTCTACCTTG 7301 .......... .......... .......... .......... .......... .......... 153 TTGTCCGATA ATATATAGCT TGTAACGACC TGTTTAGTCA TTTTGAGCAG CAGATTTTAT 7241 |||||||||| ||||||||| ||||||| || |||||||||| .......... .......... TGTAACGACC TGTTTAGTCG TTTTGAGTAG CAGATTTTAT 193 TTCTGGAAAA ATAGGCTGAG GCAACGGATC CCACGACGGA CCGTCATGGG CACGACGGAC 7181 || ||||||| | ||| |||| | ||||| | |||||||||| |||||||| | ||||| |||| TTTTGGAAAA ACAGGTTGAG ACGACGGAAC CCACGACGGA CCGTCATGAG CACGATGGAC 253 CGTCGCAGGG TCTCGTTTCA AAACACTTAG AAAATCTGAA ATTGGGTACT GAAAATCGAC 7121 ||||| | | |||||||||| |||||||||| ||| |||||| |||||||||| ||||||||| CGTCGAGGAG TCTCGTTTCA AAACACTTAG AAATTCTGAA ATTGGGTACT AAAAATCGAC 313 TCTCTGAACT TCGTGACGGA ATGGCAGGAC GGACCGTCAC AGGCGTGACG GACCGTCACA 7061 |||||||||| |||| ||||| |||||| ||| |||||||||| ||||||||| |||||||||| TCTCTGAACT TCGTAACGGA ATGGCACGAC GGACCGTCAC GGGCGTGACG GACCGTCACA 373 GAGCCTTCAG TGAAAACCCA TTCTCTGAAC CTTACGACGA CTTGCAGGAC GGACCGTCGT 7001 || ||| | || ||| | ||||||||| ||| |||||| | |||||||| ||||||||| GACTCTTTGG TGGAAATTGA GTCTCTGAAC CTTGCGACGA CCTGCAGGAC GGACCGTCGC 433 AGGCACGACG GGCCGTCGCA GGCTACGCAA TCCCAGGCTG TGTCGGATTT CTGTTAATTT 6941 |||||||||| |||| || || || | || || |||||| ||| ||||||||| || ||| AGGCACGACG GGCCATCACA GGTTGCGTAA TCCCAGTCTG GGTCGGATTT CT-TTACACG 492 ATTTAAGGGG CATTTTGGAC TATTTCCTAC TTTAATTATA AAG-TGGTGG GTTAATGTTA 6882 |||||||| | |||||||| || ||||||| |||||||||| ||| | |||| ||| |||||| TTTTAAGGGA CGTTTTGGAC TA-TTCCTAC TTTAATTATA AAGTTAGTGG GTTTATGTTA 551 ATAAGTCTAA TTACTTGGGG GTTAAAAGAG GTAACCTTAA GTTAACTAGT GGGTT 6827 |||||||||| |||| ||||| |||||||||| |||||||| | || || |||| ||||| ATAAGTCTAA TTACCTGGGG GTTAAAAGAG GTAACCTTGA GTAAATTAGT GGGTT 606 hqPGS_C06HBa0158P14.1-16-_SGN-E377132+ (7280 6827) ******************************************************************************** EST sequence 27 -strand 356 n (File: SGN-E396037-) 1 GTCACAGACT CTTTGGTGGA AAGAGAGTCT CTGAACCTAG AGAAGACCTG CAGGACGGAC 61 CGTCGCAGGC ACGACGGGCC ATCACAGGTT GCGTAATCCC AGTCTGGGTC GGATTTCTTT 121 ACACGTTTTA AGGGACGTTT TGGACTATTC CTACTTTAAT TATAAAGTTA GTGGGTTTAT 181 GTTAATAAGT CTAATTACCT GGGGGTTAAA AGAGGTAACC TCGAGTAAAA CATCCATCTC 241 AATACCCCAT TCATCCTCAT CTTCTTCTCG TGAATCGTGG TAGTCATCAT CATCATCATC 301 ATGTTAATCA TATAGATGCG GCATAGTGGT AAACAAAACA TGAGGCTCCG CTGCCC Predicted gene structure (within gDNA segment 8997 to 4895): Exon 1 7066 6837 ( 230 n); cDNA 1 229 ( 229 n); score: 0.828 MATCH C06HBa0158P14.1-16- SGN-E396037- 0.828 230 0.646 C PGS_C06HBa0158P14.1-16-_SGN-E396037- (7066 6837) Alignment (genomic DNA sequence = upper lines): GTCACAGAGC CTTCAGTGAA AACCCATTCT CTGAACCTTA CGACGACTTG CAGGACGGAC 7007 |||||||| ||| ||| | || | ||| |||||||| || ||| || |||||||||| GTCACAGACT CTTTGGTGGA AAGAGAGTCT CTGAACCTAG AGAAGACCTG CAGGACGGAC 60 CGTCGTAGGC ACGACGGGCC GTCGCAGGCT ACGCAATCCC AGGCTGTGTC GGATTTCTGT 6947 ||||| |||| |||||||||| || |||| | || |||||| || ||| ||| |||||||| | CGTCGCAGGC ACGACGGGCC ATCACAGGTT GCGTAATCCC AGTCTGGGTC GGATTTCT-T 119 TAATTTATTT AAGGGGCATT TTGGACTATT TCCTACTTTA ATTATAAAG- TGGTGGGTTA 6888 || ||| ||||| | || |||||||| | |||||||||| ||||||||| | ||||||| TACACGTTTT AAGGGACGTT TTGGACTA-T TCCTACTTTA ATTATAAAGT TAGTGGGTTT 178 ATGTTAATAA GTCTAATTAC TTGGGGGTTA AAAGAGGTAA CCTTAAGTTA A 6837 |||||||||| |||||||||| ||||||||| |||||||||| ||| ||| | | ATGTTAATAA GTCTAATTAC CTGGGGGTTA AAAGAGGTAA CCTCGAGTAA A 229 hqPGS_C06HBa0158P14.1-16-_SGN-E396037- (7066 6837) ******************************************************************************** EST sequence 60 +strand 647 n (File: SGN-E396055+) 1 TTTTTTTTTT ATGAATTAGC TCAATGAAAA ATGAGTAAAT TTTTTATATT TTATGGCATA 61 ATTTTTTCAT TAATTCATGG TTGAGAAAAT CTTTGTTTCT AATAGTGTTA TAAATCGTAA 121 AATAATAATA ATATTTAAGT AGGAAGAACA TAAATGTAAC GACCTGTTTA GTCGTTTTGA 181 GTAGCAGATT TTATTTTTGG AAAAACAGGT TGAGACGACG GAACCCACGA CGGACCGTCA 241 TGAGCACGAT GGACCGTCGA GGAGTCTCGT TTCAAAACAC TTAGAAATTC TGAAATTGGG 301 TACTAAAAAT CGACTCTCTG AACTTCGTAA CGGAATGGCA CGACGGACCG TCACGGGCGT 361 GACGGACCGT CACAGACTCT TTGGTGGAAA TTGAGTCTCT GAACCTTGCG ACGACCTGCA 421 GGACGGACCG TCGCAGGCAC GACGGGCCAT CACAGGTTGC GTAATCCCAG TCTGGGTCGG 481 ATTTCTTTAC ACGTTTTAAG GGACGTTTTG GACTATTCCT ACTTTAATTA TAAAGTTAGT 541 GGGGTTTATG TTAATAAGTC TAATTACCCT GGGGGTTAAA AAAAGGAACC CTTGAGTAAA 601 TTAGTGGGTT ATTATTTCCA TCTTTTTATT CTTAATTATA TGCTAAT Predicted gene structure (within gDNA segment 9099 to 5458): Exon 1 9099 9072 ( 28 n); cDNA 87 113 ( 27 n); score: 0.679 Intron 1 9071 9027 ( 45 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.67) Exon 2 9026 8986 ( 41 n); cDNA 114 154 ( 41 n); score: 0.671 Intron 2 8985 7281 (1705 n); Pd: 0.000 (s: 0.67), Pa: 0.000 (s: 0.94) Exon 3 7280 6855 ( 426 n); cDNA 155 581 ( 427 n); score: 0.867 PPA cDNA 12 1 MATCH C06HBa0158P14.1-16- SGN-E396055+ 0.867 495 0.765 C PGS_C06HBa0158P14.1-16-_SGN-E396055+ (9099 9072,9026 8986,7280 6855) Alignment (genomic DNA sequence = upper lines): AAATTTATAA TTTATAATAT TTTTTTTATT TAAATTTTTT AATTTAAAAT ATCAAATTAA 9040 |||| | | ||| ||||| | || | | AAATCT-TTG TTTCTAATAG TGTTATAA.. .......... .......... .......... 113 TATAATCTAT TTTAACTTTA AAAAATAATA A-ATTTAACT TTCGAAAAAT ATAATATAAC 8981 | | | | || ||||||| | |||||| | ||| || |||| .......... ...ATCGTAA AATAATAATA ATATTTAA-G TAGGAAGAAC ATAAA..... 154 AACTAAAAAA AACCAATGAA ATAACATTCA TTAAAGTTAT AGCAGTGTAT TTTATTTTAC 8921 .......... .......... .......... .......... .......... .......... 154 CTGCTCCTTA TTGTAAAAGC AATTTATTTT TTTACATTTG TTCATAAAAA AAATAATTTA 8861 .......... .......... .......... .......... .......... .......... 154 TTACTAGTTC TTTTCAACAG TTTATATATC AAATTTAAGA AAAAAGGTAA TGGATCGTTA 8801 .......... .......... .......... .......... .......... .......... 154 TAGAGGCCCC TTTAATTTCA GCCCCCTATT TATTTATTTT TACATATGTA TACATTATAC 8741 .......... .......... .......... .......... .......... .......... 154 TCTTTTGTTT TAATGTATAT AATGATGTTT TAATTTTATG AGTCAAATGA GTTACCTTTT 8681 .......... .......... .......... .......... .......... .......... 154 ACTATAATAT TTTATATTAT TAACTATTGT GACTTCAATA CTTATTATAT AGTTTCAAAC 8621 .......... .......... .......... .......... .......... .......... 154 ATATAAATTT TATTTTTAAA AATTTATATT TAAGCATACA ATCAAAGTTC AAAAGTTCTT 8561 .......... .......... .......... .......... .......... .......... 154 ATCCCCAAAA GTGAAAAATA ACATATAATT CGATATACAG AGAGTATTTA AATTTGGGCA 8501 .......... .......... .......... .......... .......... .......... 154 ACTTTCACAT ATAGCAAATA AAAAATTCAT ATTTGTATGC TATAGCAAAG TTTGCATAAT 8441 .......... .......... .......... .......... .......... .......... 154 TGCGCTCAAT AGCAAACATT GAAACTGTAT AATTCGCTAT ACATATACAT TTGAAGCAAA 8381 .......... .......... .......... .......... .......... .......... 154 TTGTATAAAA CAGAGTGCAT AAAACAAGAA AGAGAAAGAC ACTTGGGCAG AGAACTGTAT 8321 .......... .......... .......... .......... .......... .......... 154 AAAAATGATA TGTATAAAAC GAATTGTATT ATTATAAGTG TATAGAATAA TTATATACAA 8261 .......... .......... .......... .......... .......... .......... 154 TTTGAATTTG TATAAAATGA GAAAGAGAGA AAGACAAAAG AGACTTGACA AGGAATATAC 8201 .......... .......... .......... .......... .......... .......... 154 AATTGAATCG AATTGTATAA AATGAGAAAG AGAGAAATTA GATACAATTT GAAAATTGTA 8141 .......... .......... .......... .......... .......... .......... 154 TAAAATGAGA AAGAGAGAAA GGCAAAAGAA ATTGCGCAGG GGAGTATTTA TTGTATAATT 8081 .......... .......... .......... .......... .......... .......... 154 ATAAGTGTAT AGGACGAAAA TATATGTACT TGCAAGTGTA TATACAATTT TCTCACGCTT 8021 .......... .......... .......... .......... .......... .......... 154 TATACAAACA AAAACACAAT TTATACACTT CACTTCTGTT TGTATAAGTG AGAAAGGCGG 7961 .......... .......... .......... .......... .......... .......... 154 GGGTGGCGAG CAAGATTTGG GAGAGTGGCG AGCGAGATCT GGAAGAGGGG AGAGAGGAGA 7901 .......... .......... .......... .......... .......... .......... 154 ACAAAAATAT ATGTATTTAT ACAATTTTCT CTACTTTATC AATTATAAAC AATTTTTATA 7841 .......... .......... .......... .......... .......... .......... 154 CACTTCTGTT TGTATAAAAA GTGAGGAAGC GAACGAGAGA TTAGAGGAGA GTAGCGAGCG 7781 .......... .......... .......... .......... .......... .......... 154 AGATATTTGG GAGAGAGGCG CCTGACAATT TTTTTGCAAA CGTTAGCTAT GGAGCACAAT 7721 .......... .......... .......... .......... .......... .......... 154 TAAATCAAAC CCTAGCTACT CCATTTATTT TAGGTTATTA GTTTGCTATT ATATAAGATT 7661 .......... .......... .......... .......... .......... .......... 154 TTGTCTATAT AATTTTTTTT CATACTATAG GTAAACTTCT TTGATTGTTA GATTTAAAAT 7601 .......... .......... .......... .......... .......... .......... 154 CTTGAAATAA AATAGGTACC TTCTACATTA TATAAATATG ACCCTAATGC TACAAAATTA 7541 .......... .......... .......... .......... .......... .......... 154 TTTGGCTAAA AAATTATTTG GTCCAATATA TTCCTATTTG TTGAAATGAT TTCCCTACTT 7481 .......... .......... .......... .......... .......... .......... 154 AATAATTGAC ACTAGATCTT GCCTTGTGTT ATAATTGAAG ATATATTTGA TACCACATGC 7421 .......... .......... .......... .......... .......... .......... 154 CTATTTTAAT CAAAGTTGTA TTTAAAATTC TGATTCCACG TTCGTTACAG TTAAACTTTT 7361 .......... .......... .......... .......... .......... .......... 154 TTAGTTTATT TTTAAAAAAA AGATAGTTTA TTAAGGATTT TCTTCCCTTC TTCTACCTTG 7301 .......... .......... .......... .......... .......... .......... 154 TTGTCCGATA ATATATAGCT TGTAACGACC TGTTTAGTCA TTTTGAGCAG CAGATTTTAT 7241 |||||||||| ||||||||| ||||||| || |||||||||| .......... .......... TGTAACGACC TGTTTAGTCG TTTTGAGTAG CAGATTTTAT 194 TTCTGGAAAA ATAGGCTGAG GCAACGGATC CCACGACGGA CCGTCATGGG CACGACGGAC 7181 || ||||||| | ||| |||| | ||||| | |||||||||| |||||||| | ||||| |||| TTTTGGAAAA ACAGGTTGAG ACGACGGAAC CCACGACGGA CCGTCATGAG CACGATGGAC 254 CGTCGCAGGG TCTCGTTTCA AAACACTTAG AAAATCTGAA ATTGGGTACT GAAAATCGAC 7121 ||||| | | |||||||||| |||||||||| ||| |||||| |||||||||| ||||||||| CGTCGAGGAG TCTCGTTTCA AAACACTTAG AAATTCTGAA ATTGGGTACT AAAAATCGAC 314 TCTCTGAACT TCGTGACGGA ATGGCAGGAC GGACCGTCAC AGGCGTGACG GACCGTCACA 7061 |||||||||| |||| ||||| |||||| ||| |||||||||| ||||||||| |||||||||| TCTCTGAACT TCGTAACGGA ATGGCACGAC GGACCGTCAC GGGCGTGACG GACCGTCACA 374 GAGCCTTCAG TGAAAACCCA TTCTCTGAAC CTTACGACGA CTTGCAGGAC GGACCGTCGT 7001 || ||| | || ||| | ||||||||| ||| |||||| | |||||||| ||||||||| GACTCTTTGG TGGAAATTGA GTCTCTGAAC CTTGCGACGA CCTGCAGGAC GGACCGTCGC 434 AGGCACGACG GGCCGTCGCA GGCTACGCAA TCCCAGGCTG TGTCGGATTT CTGTTAATTT 6941 |||||||||| |||| || || || | || || |||||| ||| ||||||||| || ||| AGGCACGACG GGCCATCACA GGTTGCGTAA TCCCAGTCTG GGTCGGATTT CT-TTACACG 493 ATTTAAGGGG CATTTTGGAC TATTTCCTAC TTTAATTATA AAG-TGGT-G GGTTAATGTT 6883 |||||||| | |||||||| || ||||||| |||||||||| ||| | || | |||| ||||| TTTTAAGGGA CGTTTTGGAC TA-TTCCTAC TTTAATTATA AAGTTAGTGG GGTTTATGTT 552 AATAAGTCTA ATTAC-TTGG GGGTTAAAA 6855 |||||||||| ||||| ||| ||||||||| AATAAGTCTA ATTACCCTGG GGGTTAAAA 581 hqPGS_C06HBa0158P14.1-16-_SGN-E396055+ (7280 6855) ******************************************************************************** EST sequence 62 +strand 525 n (File: SGN-E396069+) 1 TTTTTTTTTT ATGAATTAGC TCAATGAAAA ATGAGTAAAT TTTTTATATT TTATGGCATA 61 ATTTTTTCAT TAATTCATGG TTGAGAAAAT CTTTGTTTCT AATAGTGTTA TAAATCGTAA 121 AATAATAATA ATATTTAAGT AGGAAGAACA TAAATGTAAC GACCTGTTTA GTCGTTTTGA 181 GTAGCAGATT TTATTTTTGG AAAAACAGGT TGAGACGACG GAACCCACGA CGGACCGTCA 241 TGAGCACGAT GGACCGTCGA GGAGTCTCGT TTCAAAACAC TTAGAAATTC TGAAATTGGG 301 TACTAAAAAT CGACTCTCTG AACTTCGTAA CGGAATGGCA CGACGGACCG TCACGGGCGT 361 GACGGACCGT CACAGACTCT TTGGTGGAAA TTGAGTCTCT GAACCTTGCG ACGACCTGCA 421 GGACGGACCG TCGCAGGCAC GACGGGCCAT CACAGGTTGC GTAATCCCGG TGGGGGTCGG 481 ATTTCTTTAC ACGTTTTAAG GGACGTTTTG GACTATTCCT ACTTT Predicted gene structure (within gDNA segment 9099 to 4527): Exon 1 9099 9072 ( 28 n); cDNA 87 113 ( 27 n); score: 0.679 Intron 1 9071 9027 ( 45 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.67) Exon 2 9026 8986 ( 41 n); cDNA 114 154 ( 41 n); score: 0.671 Intron 2 8985 7281 (1705 n); Pd: 0.000 (s: 0.67), Pa: 0.000 (s: 0.94) Exon 3 7280 6908 ( 373 n); cDNA 155 525 ( 371 n); score: 0.869 PPA cDNA 12 1 MATCH C06HBa0158P14.1-16- SGN-E396069+ 0.869 442 0.842 C PGS_C06HBa0158P14.1-16-_SGN-E396069+ (9099 9072,9026 8986,7280 6908) Alignment (genomic DNA sequence = upper lines): AAATTTATAA TTTATAATAT TTTTTTTATT TAAATTTTTT AATTTAAAAT ATCAAATTAA 9040 |||| | | ||| ||||| | || | | AAATCT-TTG TTTCTAATAG TGTTATAA.. .......... .......... .......... 113 TATAATCTAT TTTAACTTTA AAAAATAATA A-ATTTAACT TTCGAAAAAT ATAATATAAC 8981 | | | | || ||||||| | |||||| | ||| || |||| .......... ...ATCGTAA AATAATAATA ATATTTAA-G TAGGAAGAAC ATAAA..... 154 AACTAAAAAA AACCAATGAA ATAACATTCA TTAAAGTTAT AGCAGTGTAT TTTATTTTAC 8921 .......... .......... .......... .......... .......... .......... 154 CTGCTCCTTA TTGTAAAAGC AATTTATTTT TTTACATTTG TTCATAAAAA AAATAATTTA 8861 .......... .......... .......... .......... .......... .......... 154 TTACTAGTTC TTTTCAACAG TTTATATATC AAATTTAAGA AAAAAGGTAA TGGATCGTTA 8801 .......... .......... .......... .......... .......... .......... 154 TAGAGGCCCC TTTAATTTCA GCCCCCTATT TATTTATTTT TACATATGTA TACATTATAC 8741 .......... .......... .......... .......... .......... .......... 154 TCTTTTGTTT TAATGTATAT AATGATGTTT TAATTTTATG AGTCAAATGA GTTACCTTTT 8681 .......... .......... .......... .......... .......... .......... 154 ACTATAATAT TTTATATTAT TAACTATTGT GACTTCAATA CTTATTATAT AGTTTCAAAC 8621 .......... .......... .......... .......... .......... .......... 154 ATATAAATTT TATTTTTAAA AATTTATATT TAAGCATACA ATCAAAGTTC AAAAGTTCTT 8561 .......... .......... .......... .......... .......... .......... 154 ATCCCCAAAA GTGAAAAATA ACATATAATT CGATATACAG AGAGTATTTA AATTTGGGCA 8501 .......... .......... .......... .......... .......... .......... 154 ACTTTCACAT ATAGCAAATA AAAAATTCAT ATTTGTATGC TATAGCAAAG TTTGCATAAT 8441 .......... .......... .......... .......... .......... .......... 154 TGCGCTCAAT AGCAAACATT GAAACTGTAT AATTCGCTAT ACATATACAT TTGAAGCAAA 8381 .......... .......... .......... .......... .......... .......... 154 TTGTATAAAA CAGAGTGCAT AAAACAAGAA AGAGAAAGAC ACTTGGGCAG AGAACTGTAT 8321 .......... .......... .......... .......... .......... .......... 154 AAAAATGATA TGTATAAAAC GAATTGTATT ATTATAAGTG TATAGAATAA TTATATACAA 8261 .......... .......... .......... .......... .......... .......... 154 TTTGAATTTG TATAAAATGA GAAAGAGAGA AAGACAAAAG AGACTTGACA AGGAATATAC 8201 .......... .......... .......... .......... .......... .......... 154 AATTGAATCG AATTGTATAA AATGAGAAAG AGAGAAATTA GATACAATTT GAAAATTGTA 8141 .......... .......... .......... .......... .......... .......... 154 TAAAATGAGA AAGAGAGAAA GGCAAAAGAA ATTGCGCAGG GGAGTATTTA TTGTATAATT 8081 .......... .......... .......... .......... .......... .......... 154 ATAAGTGTAT AGGACGAAAA TATATGTACT TGCAAGTGTA TATACAATTT TCTCACGCTT 8021 .......... .......... .......... .......... .......... .......... 154 TATACAAACA AAAACACAAT TTATACACTT CACTTCTGTT TGTATAAGTG AGAAAGGCGG 7961 .......... .......... .......... .......... .......... .......... 154 GGGTGGCGAG CAAGATTTGG GAGAGTGGCG AGCGAGATCT GGAAGAGGGG AGAGAGGAGA 7901 .......... .......... .......... .......... .......... .......... 154 ACAAAAATAT ATGTATTTAT ACAATTTTCT CTACTTTATC AATTATAAAC AATTTTTATA 7841 .......... .......... .......... .......... .......... .......... 154 CACTTCTGTT TGTATAAAAA GTGAGGAAGC GAACGAGAGA TTAGAGGAGA GTAGCGAGCG 7781 .......... .......... .......... .......... .......... .......... 154 AGATATTTGG GAGAGAGGCG CCTGACAATT TTTTTGCAAA CGTTAGCTAT GGAGCACAAT 7721 .......... .......... .......... .......... .......... .......... 154 TAAATCAAAC CCTAGCTACT CCATTTATTT TAGGTTATTA GTTTGCTATT ATATAAGATT 7661 .......... .......... .......... .......... .......... .......... 154 TTGTCTATAT AATTTTTTTT CATACTATAG GTAAACTTCT TTGATTGTTA GATTTAAAAT 7601 .......... .......... .......... .......... .......... .......... 154 CTTGAAATAA AATAGGTACC TTCTACATTA TATAAATATG ACCCTAATGC TACAAAATTA 7541 .......... .......... .......... .......... .......... .......... 154 TTTGGCTAAA AAATTATTTG GTCCAATATA TTCCTATTTG TTGAAATGAT TTCCCTACTT 7481 .......... .......... .......... .......... .......... .......... 154 AATAATTGAC ACTAGATCTT GCCTTGTGTT ATAATTGAAG ATATATTTGA TACCACATGC 7421 .......... .......... .......... .......... .......... .......... 154 CTATTTTAAT CAAAGTTGTA TTTAAAATTC TGATTCCACG TTCGTTACAG TTAAACTTTT 7361 .......... .......... .......... .......... .......... .......... 154 TTAGTTTATT TTTAAAAAAA AGATAGTTTA TTAAGGATTT TCTTCCCTTC TTCTACCTTG 7301 .......... .......... .......... .......... .......... .......... 154 TTGTCCGATA ATATATAGCT TGTAACGACC TGTTTAGTCA TTTTGAGCAG CAGATTTTAT 7241 |||||||||| ||||||||| ||||||| || |||||||||| .......... .......... TGTAACGACC TGTTTAGTCG TTTTGAGTAG CAGATTTTAT 194 TTCTGGAAAA ATAGGCTGAG GCAACGGATC CCACGACGGA CCGTCATGGG CACGACGGAC 7181 || ||||||| | ||| |||| | ||||| | |||||||||| |||||||| | ||||| |||| TTTTGGAAAA ACAGGTTGAG ACGACGGAAC CCACGACGGA CCGTCATGAG CACGATGGAC 254 CGTCGCAGGG TCTCGTTTCA AAACACTTAG AAAATCTGAA ATTGGGTACT GAAAATCGAC 7121 ||||| | | |||||||||| |||||||||| ||| |||||| |||||||||| ||||||||| CGTCGAGGAG TCTCGTTTCA AAACACTTAG AAATTCTGAA ATTGGGTACT AAAAATCGAC 314 TCTCTGAACT TCGTGACGGA ATGGCAGGAC GGACCGTCAC AGGCGTGACG GACCGTCACA 7061 |||||||||| |||| ||||| |||||| ||| |||||||||| ||||||||| |||||||||| TCTCTGAACT TCGTAACGGA ATGGCACGAC GGACCGTCAC GGGCGTGACG GACCGTCACA 374 GAGCCTTCAG TGAAAACCCA TTCTCTGAAC CTTACGACGA CTTGCAGGAC GGACCGTCGT 7001 || ||| | || ||| | ||||||||| ||| |||||| | |||||||| ||||||||| GACTCTTTGG TGGAAATTGA GTCTCTGAAC CTTGCGACGA CCTGCAGGAC GGACCGTCGC 434 AGGCACGACG GGCCGTCGCA GGCTACGCAA TCCCAGGCTG TGTCGGATTT CTGTTAATTT 6941 |||||||||| |||| || || || | || || |||| | | ||||||||| || ||| AGGCACGACG GGCCATCACA GGTTGCGTAA TCCCGGTGGG GGTCGGATTT CT-TTACACG 493 ATTTAAGGGG CATTTTGGAC TATTTCCTAC TTT 6908 |||||||| | |||||||| || ||||||| ||| TTTTAAGGGA CGTTTTGGAC TA-TTCCTAC TTT 525 hqPGS_C06HBa0158P14.1-16-_SGN-E396069+ (7280 6908) ******************************************************************************** EST sequence 55 +strand 519 n (File: SGN-E374998+) 1 TTTTTTTTTA TGAATTAGCT CAATGAAAAA TGAGTAAATT TTTTATATTT TATGGCATAA 61 TTTTTTCATT AATTCATGGT TGAGAAAATC TTTGTTTCTA ATAGTGTTAT AAATCGTAAA 121 ATAATAATAA TATTTAAGTA GGAAGAACAT AAATGTAACG ACCTGTTTAG TCGTTTTGAG 181 TAGCAGATTT TATTTTTGGA AAAACAGGTT GAGACGACGG AACCCACGAC GGACCGTCAT 241 GAGCACGATG GACCGTCGAG GAGTCTCGTT TCAAAACACT TAGAAATTCT GAAATTGGGT 301 ACTAAAAATC GACTCTCTGA ACTTCGTAAC GGAATGGCAC GACGGACCGT CACGGGCGTG 361 ACGGACCGTC ACAGACTCTT TGGTGGAAAT TGAGTCTCTG AACCTTGCGA CGACCTGCAG 421 GACGGACCGT CGCAGGCACG ACGGGCCATC ACAGGTTGCG TAATCCCAGT CTGGGTCGGA 481 TTTCTTTTAC ACGTTTTAAG GGACGTTATG TACTATTCC Predicted gene structure (within gDNA segment 9099 to 4577): Exon 1 9099 9072 ( 28 n); cDNA 86 112 ( 27 n); score: 0.679 Intron 1 9071 9027 ( 45 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0.67) Exon 2 9026 8986 ( 41 n); cDNA 113 153 ( 41 n); score: 0.671 Intron 2 8985 7281 (1705 n); Pd: 0.000 (s: 0.67), Pa: 0.000 (s: 0.94) Exon 3 7280 6917 ( 364 n); cDNA 154 517 ( 364 n); score: 0.871 PPA cDNA 11 1 MATCH C06HBa0158P14.1-16- SGN-E374998+ 0.871 433 0.834 C PGS_C06HBa0158P14.1-16-_SGN-E374998+ (9099 9072,9026 8986,7280 6917) Alignment (genomic DNA sequence = upper lines): AAATTTATAA TTTATAATAT TTTTTTTATT TAAATTTTTT AATTTAAAAT ATCAAATTAA 9040 |||| | | ||| ||||| | || | | AAATCT-TTG TTTCTAATAG TGTTATAA.. .......... .......... .......... 112 TATAATCTAT TTTAACTTTA AAAAATAATA A-ATTTAACT TTCGAAAAAT ATAATATAAC 8981 | | | | || ||||||| | |||||| | ||| || |||| .......... ...ATCGTAA AATAATAATA ATATTTAA-G TAGGAAGAAC ATAAA..... 153 AACTAAAAAA AACCAATGAA ATAACATTCA TTAAAGTTAT AGCAGTGTAT TTTATTTTAC 8921 .......... .......... .......... .......... .......... .......... 153 CTGCTCCTTA TTGTAAAAGC AATTTATTTT TTTACATTTG TTCATAAAAA AAATAATTTA 8861 .......... .......... .......... .......... .......... .......... 153 TTACTAGTTC TTTTCAACAG TTTATATATC AAATTTAAGA AAAAAGGTAA TGGATCGTTA 8801 .......... .......... .......... .......... .......... .......... 153 TAGAGGCCCC TTTAATTTCA GCCCCCTATT TATTTATTTT TACATATGTA TACATTATAC 8741 .......... .......... .......... .......... .......... .......... 153 TCTTTTGTTT TAATGTATAT AATGATGTTT TAATTTTATG AGTCAAATGA GTTACCTTTT 8681 .......... .......... .......... .......... .......... .......... 153 ACTATAATAT TTTATATTAT TAACTATTGT GACTTCAATA CTTATTATAT AGTTTCAAAC 8621 .......... .......... .......... .......... .......... .......... 153 ATATAAATTT TATTTTTAAA AATTTATATT TAAGCATACA ATCAAAGTTC AAAAGTTCTT 8561 .......... .......... .......... .......... .......... .......... 153 ATCCCCAAAA GTGAAAAATA ACATATAATT CGATATACAG AGAGTATTTA AATTTGGGCA 8501 .......... .......... .......... .......... .......... .......... 153 ACTTTCACAT ATAGCAAATA AAAAATTCAT ATTTGTATGC TATAGCAAAG TTTGCATAAT 8441 .......... .......... .......... .......... .......... .......... 153 TGCGCTCAAT AGCAAACATT GAAACTGTAT AATTCGCTAT ACATATACAT TTGAAGCAAA 8381 .......... .......... .......... .......... .......... .......... 153 TTGTATAAAA CAGAGTGCAT AAAACAAGAA AGAGAAAGAC ACTTGGGCAG AGAACTGTAT 8321 .......... .......... .......... .......... .......... .......... 153 AAAAATGATA TGTATAAAAC GAATTGTATT ATTATAAGTG TATAGAATAA TTATATACAA 8261 .......... .......... .......... .......... .......... .......... 153 TTTGAATTTG TATAAAATGA GAAAGAGAGA AAGACAAAAG AGACTTGACA AGGAATATAC 8201 .......... .......... .......... .......... .......... .......... 153 AATTGAATCG AATTGTATAA AATGAGAAAG AGAGAAATTA GATACAATTT GAAAATTGTA 8141 .......... .......... .......... .......... .......... .......... 153 TAAAATGAGA AAGAGAGAAA GGCAAAAGAA ATTGCGCAGG GGAGTATTTA TTGTATAATT 8081 .......... .......... .......... .......... .......... .......... 153 ATAAGTGTAT AGGACGAAAA TATATGTACT TGCAAGTGTA TATACAATTT TCTCACGCTT 8021 .......... .......... .......... .......... .......... .......... 153 TATACAAACA AAAACACAAT TTATACACTT CACTTCTGTT TGTATAAGTG AGAAAGGCGG 7961 .......... .......... .......... .......... .......... .......... 153 GGGTGGCGAG CAAGATTTGG GAGAGTGGCG AGCGAGATCT GGAAGAGGGG AGAGAGGAGA 7901 .......... .......... .......... .......... .......... .......... 153 ACAAAAATAT ATGTATTTAT ACAATTTTCT CTACTTTATC AATTATAAAC AATTTTTATA 7841 .......... .......... .......... .......... .......... .......... 153 CACTTCTGTT TGTATAAAAA GTGAGGAAGC GAACGAGAGA TTAGAGGAGA GTAGCGAGCG 7781 .......... .......... .......... .......... .......... .......... 153 AGATATTTGG GAGAGAGGCG CCTGACAATT TTTTTGCAAA CGTTAGCTAT GGAGCACAAT 7721 .......... .......... .......... .......... .......... .......... 153 TAAATCAAAC CCTAGCTACT CCATTTATTT TAGGTTATTA GTTTGCTATT ATATAAGATT 7661 .......... .......... .......... .......... .......... .......... 153 TTGTCTATAT AATTTTTTTT CATACTATAG GTAAACTTCT TTGATTGTTA GATTTAAAAT 7601 .......... .......... .......... .......... .......... .......... 153 CTTGAAATAA AATAGGTACC TTCTACATTA TATAAATATG ACCCTAATGC TACAAAATTA 7541 .......... .......... .......... .......... .......... .......... 153 TTTGGCTAAA AAATTATTTG GTCCAATATA TTCCTATTTG TTGAAATGAT TTCCCTACTT 7481 .......... .......... .......... .......... .......... .......... 153 AATAATTGAC ACTAGATCTT GCCTTGTGTT ATAATTGAAG ATATATTTGA TACCACATGC 7421 .......... .......... .......... .......... .......... .......... 153 CTATTTTAAT CAAAGTTGTA TTTAAAATTC TGATTCCACG TTCGTTACAG TTAAACTTTT 7361 .......... .......... .......... .......... .......... .......... 153 TTAGTTTATT TTTAAAAAAA AGATAGTTTA TTAAGGATTT TCTTCCCTTC TTCTACCTTG 7301 .......... .......... .......... .......... .......... .......... 153 TTGTCCGATA ATATATAGCT TGTAACGACC TGTTTAGTCA TTTTGAGCAG CAGATTTTAT 7241 |||||||||| ||||||||| ||||||| || |||||||||| .......... .......... TGTAACGACC TGTTTAGTCG TTTTGAGTAG CAGATTTTAT 193 TTCTGGAAAA ATAGGCTGAG GCAACGGATC CCACGACGGA CCGTCATGGG CACGACGGAC 7181 || ||||||| | ||| |||| | ||||| | |||||||||| |||||||| | ||||| |||| TTTTGGAAAA ACAGGTTGAG ACGACGGAAC CCACGACGGA CCGTCATGAG CACGATGGAC 253 CGTCGCAGGG TCTCGTTTCA AAACACTTAG AAAATCTGAA ATTGGGTACT GAAAATCGAC 7121 ||||| | | |||||||||| |||||||||| ||| |||||| |||||||||| ||||||||| CGTCGAGGAG TCTCGTTTCA AAACACTTAG AAATTCTGAA ATTGGGTACT AAAAATCGAC 313 TCTCTGAACT TCGTGACGGA ATGGCAGGAC GGACCGTCAC AGGCGTGACG GACCGTCACA 7061 |||||||||| |||| ||||| |||||| ||| |||||||||| ||||||||| |||||||||| TCTCTGAACT TCGTAACGGA ATGGCACGAC GGACCGTCAC GGGCGTGACG GACCGTCACA 373 GAGCCTTCAG TGAAAACCCA TTCTCTGAAC CTTACGACGA CTTGCAGGAC GGACCGTCGT 7001 || ||| | || ||| | ||||||||| ||| |||||| | |||||||| ||||||||| GACTCTTTGG TGGAAATTGA GTCTCTGAAC CTTGCGACGA CCTGCAGGAC GGACCGTCGC 433 AGGCACGACG GGCCGTCGCA GGCTACGCAA TCCCAGGCTG TGTCGGATTT CTGTTAATTT 6941 |||||||||| |||| || || || | || || |||||| ||| ||||||||| || ||| AGGCACGACG GGCCATCACA GGTTGCGTAA TCCCAGTCTG GGTCGGATTT CTTTTACACG 493 ATTTAAGGGG CATTTTGGAC TATT 6917 |||||||| | || || || |||| TTTTAAGGGA CGTTATGTAC TATT 517 hqPGS_C06HBa0158P14.1-16-_SGN-E374998+ (7280 6917) ******************************************************************************** EST sequence 51 +strand 542 n (File: SGN-E252199+) 1 CTTGATGAGA ATTTGTCTTA TGAGGAGGAG CCTGTTGCCA TTTTAGATAG AGAAGTCCGC 61 AAATTGAGGT CAAGGGAGAT TGCATCTATC AAAGTTCAAT GGAAGAATCG ACCAGTTGAA 121 GAATCCACTT GGGAGAAGGA AGTTGATATG CGAGAAAGAT ACCCATACCT GTTTACAGAT 181 TCAGGTACTC CTTTTCGCCC TTGTTTTTCT TCTTGTGATC GTTCGGGGAC GAACGATGGG 241 TAAATTGGTA TCTATTGTAA CGACCTGTTT AGTCGTTTTG AGTAACAGAT TTTATTTCTG 301 GAAAAACTGA CTGAGACGAC GGATCCCACG ACGGACCGTC GAGGGGGTCT CGTTCCAAAA 361 CACTTAGAAT TCTGAAATTT GGGTACTGAA ATCGACTCTC TGAACTTCGT GACGGAATGG 421 CAGGACGGAC CGTCACAGGC GTGATGGGCC GTCACAGACC CTTGGTAAAA ATCTAGTCTC 481 TGAACTCTGT GACGGACGTG CAGGACGGAC CGTCACAGAC TGCGTAATCC CAGGCTGGGT 541 CG Predicted gene structure (within gDNA segment 9099 to 5483): Exon 1 7281 7003 ( 279 n); cDNA 255 514 ( 260 n); score: 0.824 MATCH C06HBa0158P14.1-16- SGN-E252199+ 0.824 279 0.515 C PGS_C06HBa0158P14.1-16-_SGN-E252199+ (7281 7003) Alignment (genomic DNA sequence = upper lines): TTGTAACGAC CTGTTTAGTC ATTTTGAGCA GCAGATTTTA TTTCTGGAAA AATAGGCTGA 7222 |||||||||| |||||||||| ||||||| | ||||||||| |||||||||| || | |||| TTGTAACGAC CTGTTTAGTC GTTTTGAGTA ACAGATTTTA TTTCTGGAAA AACTGACTGA 314 GGCAACGGAT CCCACGACGG ACCGTCATGG GCACGACGGA CCGTCGCAGG GTCTCGTTTC 7162 | | |||||| |||||||||| |||||| | | | || | |||||||| | GACGACGGAT CCCACGACGG ACCGTC---- G-A-G--GG- ---------G GTCTCGTTCC 356 AAAACACTTA GAAAATCTGA AA-TTGGGTA CTGAAAATCG ACTCTCTGAA CTTCGTGACG 7103 |||||||||| || | ||||| || ||||||| ||| |||||| |||||||||| |||||||||| AAAACACTTA GA-ATTCTGA AATTTGGGTA CTG-AAATCG ACTCTCTGAA CTTCGTGACG 414 GAATGGCAGG ACGGACCGTC ACAGGCGTGA CGGACCGTCA CAGAGCCTTC AGTGAAAACC 7043 |||||||||| |||||||||| |||||||||| || |||||| |||| |||| || |||| | GAATGGCAGG ACGGACCGTC ACAGGCGTGA TGGGCCGTCA CAGACCCTT- GGTAAAAATC 473 CATTCTCTGA ACCTTACGAC -GACTTGCAG GACGGACCGT C 7003 | ||||||| || | ||| ||| ||||| |||||||||| | TAGTCTCTGA ACTCTGTGAC GGACGTGCAG GACGGACCGT C 514 hqPGS_C06HBa0158P14.1-16-_SGN-E252199+ (7281 7003) ******************************************************************************** EST sequence 37 -strand 548 n (File: SGN-E356257-) 1 GTTAACTAGA AAATTAAAGT GATAGAGTCA AATAATGTAA CGACCCGTTT AGTCGTTTTG 61 AGCAGCAGAC TTTATTTCTG GAAAAACTGG CAGAAGCGAC GGACCCCACG ACGGACCGTC 121 ATGGGCACGA CGGACCATCG CAGGGTCTCG TTTCAAAACC CTCTTTCTTT TACCCCAAAT 181 TAACATATAA TTAAGAATAA AAGATGGCAA TAATACCCCA CTAATTAACT TAGGGTTACC 241 TCTTTTAACC CCAAGAATTT GAGTTATTAA TATAAACCCA CGAAATCTAT AATTAAGGAA 301 AGAATAGTCC AAAAACGTCC CTTAAAACGT GTAAGGAAAT CCGATTCTGC CTGGGATTTG 361 CGCAACCTGT GACGGGCCGT CGTGACTGTG ACGGTCCGTC CTGCAGGTCG TCGCAAGGGT 421 CAGAGAGTCA ATTTCCACTG AACAATCTAT GACGGTCCGT CACGCCTGTG ATGGTCCGTC 481 CTGTCATTCC GTCACGAAGT TCAGAGAGTC GATTTTCAGT ACCCAATTTC AGATTTTCTA 541 AGTGTTTT Predicted gene structure (within gDNA segment 8555 to 2067): Exon 1 7280 7154 ( 127 n); cDNA 36 162 ( 127 n); score: 0.913 Intron 1 7153 5024 (2130 n); Pd: 0.000 (s: 0.96), Pa: 0.662 (s: 0) Exon 2 5023 4999 ( 25 n); cDNA 163 186 ( 24 n); score: 0.680 Intron 2 4998 3048 (1951 n); Pd: 0.000 (s: 0), Pa: 0.000 (s: 0) Exon 3 3047 3037 ( 11 n); cDNA 187 197 ( 11 n); score: 0.818 MATCH C06HBa0158P14.1-16- SGN-E356257- 0.913 163 0.297 C PGS_C06HBa0158P14.1-16-_SGN-E356257- (7280 7154,5023 4999,3047 3037) Alignment (genomic DNA sequence = upper lines): TGTAACGACC TGTTTAGTCA TTTTGAGCAG CAGATTTTAT TTCTGGAAAA ATAGGCTGAG 7221 |||||||||| |||||||| |||||||||| |||| ||||| |||||||||| | ||| || TGTAACGACC CGTTTAGTCG TTTTGAGCAG CAGACTTTAT TTCTGGAAAA ACTGGCAGAA 95 GCAACGGATC CCACGACGGA CCGTCATGGG CACGACGGAC CGTCGCAGGG TCTCGTTTCA 7161 || ||||| | |||||||||| |||||||||| |||||||||| | |||||||| |||||||||| GCGACGGACC CCACGACGGA CCGTCATGGG CACGACGGAC CATCGCAGGG TCTCGTTTCA 155 AAACACTTAG AAAATCTGAA ATTGGGTACT GAAAATCGAC TCTCTGAACT TCGTGACGGA 7101 |||| || AAACCCT... .......... .......... .......... .......... .......... 162 ATGGCAGGAC GGACCGTCAC AGGCGTGACG GACCGTCACA GAGCCTTCAG TGAAAACCCA 7041 .......... .......... .......... .......... .......... .......... 162 TTCTCTGAAC CTTACGACGA CTTGCAGGAC GGACCGTCGT AGGCACGACG GGCCGTCGCA 6981 .......... .......... .......... .......... .......... .......... 162 GGCTACGCAA TCCCAGGCTG TGTCGGATTT CTGTTAATTT ATTTAAGGGG CATTTTGGAC 6921 .......... .......... .......... .......... .......... .......... 162 TATTTCCTAC TTTAATTATA AAGTGGTGGG TTAATGTTAA TAAGTCTAAT TACTTGGGGG 6861 .......... .......... .......... .......... .......... .......... 162 TTAAAAGAGG TAACCTTAAG TTAACTAGTG GGTTATCTTT TATACTTAAT TATATGTTAA 6801 .......... .......... .......... .......... .......... .......... 162 TTAGGGTAAA AGAAAGAGGG TTGGAATAAG AAAAATAAGA AAGAACAAAG AGAGACAGAA 6741 .......... .......... .......... .......... .......... .......... 162 AAAGAAAGAA AACGAGTAGA GAGAGAGAGA AACGAAGGGA ATATCAAGGA TTTTGAGAAG 6681 .......... .......... .......... .......... .......... .......... 162 ATAGCTTGTT GATCGCAATT CTTCGGTGGA GGTAGGTTAT GGTTATTTCA TGCTATTCGT 6621 .......... .......... .......... .......... .......... .......... 162 AGTAAACTCT TAATAGCGAA TGATATGTGT TAGTAGTATT GTGAACCTTC TATATGCTTA 6561 .......... .......... .......... .......... .......... .......... 162 ATTGTATGCT TGCATGAATG ATGTGATTAT GTAATTATGA ATAAATAAGC ATGATGAAGC 6501 .......... .......... .......... .......... .......... .......... 162 TATTTAATCC CAAATCTTGA AAAGAAACCA TAATCTACTT TGTTAATGAT GATGCCTTGG 6441 .......... .......... .......... .......... .......... .......... 162 TATAAAAGAA GGCTTGATGA ATGAAAGTAG TGAGATTAGG GGATCGGGTG CCACGTTCCG 6381 .......... .......... .......... .......... .......... .......... 162 GTACCAGGAT AGTATATGAG GATCGGAGTA TCACGTTCCG ACACCAGGAT AATATATGGA 6321 .......... .......... .......... .......... .......... .......... 162 TCGGGTGCCA CGTTCCGGTA CCAGGATAGA ATATGGATCG GGTGTCACGT TCCAACACCA 6261 .......... .......... .......... .......... .......... .......... 162 GGATAGAATA TGGATCGGGT GCCACGTTCC GGTACCAGGG TAGAATATGG ATCGGGTGTC 6201 .......... .......... .......... .......... .......... .......... 162 ACGTTCCGAC ACCAGGATAG AATATGGATC GGGTGCCACG TTCCGGTACC AGGATAATAT 6141 .......... .......... .......... .......... .......... .......... 162 ATGAGGATCG GAGTGTCACG TTCCGACACC AGGATAGTAT ATTGAGGAGC GGAGTGTCAC 6081 .......... .......... .......... .......... .......... .......... 162 GTACCGACAC GAGGGGAATA AAGATAATGA ATTTTGAAAG ATGTTAATAT GTTCAATCTA 6021 .......... .......... .......... .......... .......... .......... 162 ATGAACCTAA TTCCCAAATG AGTATGATGA GGAGGCGTGA GTCCTCATTG ATGTGCTTGG 5961 .......... .......... .......... .......... .......... .......... 162 TGTTGCAACC AAGGGTTATG GTAACTGTAA ATGCTGCATG CTAAGGATAT TAGTTGATTT 5901 .......... .......... .......... .......... .......... .......... 162 TATGATATTG CTTAACATAT ACTGTTTTCT ATTTTGAGTT GGCCGATGAT ATCTACTCAG 5841 .......... .......... .......... .......... .......... .......... 162 TACCCGTGTT TTGTACTGAC CCCTACTTTT ATGTTTTCTT CTTTGTTATT TGTGGAGTGC 5781 .......... .......... .......... .......... .......... .......... 162 AGCAAACGTG CCGTCGTCTT CAACTCAACA GTAATTCAAG CCAGTCTTTA CTACACCGGA 5721 .......... .......... .......... .......... .......... .......... 162 AATTCAGGGT GAGCTAATGT TTCTAGCTTG GACTGGATCT TTTTCTTCAA GTCTTGATGC 5661 .......... .......... .......... .......... .......... .......... 162 CTTGAACTTC CGGCATGGAC TAGCTTTTAC TTGTTTTAGC TTTTAGAATA CTCTTAGTTT 5601 .......... .......... .......... .......... .......... .......... 162 AGTAATTGAT CATAGATGTT CTTGTGATGA TGACTTCCAG ATTTTGGGAA ATAATAATAG 5541 .......... .......... .......... .......... .......... .......... 162 TTATTGATTT TATTAATGAG TTTAAGTCTT CCGCATTATT TACTGTTGAT ATTATATTGA 5481 .......... .......... .......... .......... .......... .......... 162 AATGTTAGAG TTTAGATTGG TTGGTTCGCT CACATAGGAG GGTAAGTGTG GGTGCCAGTC 5421 .......... .......... .......... .......... .......... .......... 162 ACGGTCCGGA TTTGGGTCGT GACATAGCTC AATGATTATA AAATGATATA AGTGAGCAGC 5361 .......... .......... .......... .......... .......... .......... 162 TAATGGCAAT TACATAAATC AACAGATATG TTTTAGAAAC TCACCTCTCG AACTTACGAA 5301 .......... .......... .......... .......... .......... .......... 162 AATCGTATCA TCTAAAATTG TGAATTCGTC ACTGCAAACA ACTCGTGTCT CCTCTATTCG 5241 .......... .......... .......... .......... .......... .......... 162 CCTCCATCAC CATCCATATC ATGTATATGA GCAATGGCGA TGATCGCAAC GCCGGCTGCT 5181 .......... .......... .......... .......... .......... .......... 162 CCCATATCGT TGCTCCCATG ATTGTTAGCT ACCTTATGGT TTACATGATC AGTATGACCA 5121 .......... .......... .......... .......... .......... .......... 162 TAACCAACCA TGTTGTTAAA GCCTTTACTT TTTTGAGTTG GTTTTGAATA TTGTGGAACT 5061 .......... .......... .......... .......... .......... .......... 162 CTTTCTTTTG GTGTTGACTT GTGCCTTTCT TTCTTAGTTT TGTTGTTCTT CCAATTAATC 5001 || | || | | | |||||| | .......... .......... .......... .......CTT TCTTTTACCC CAAATTAA-C 184 ATGCAAAAAC AACAATTCTT GATCCCCATA TTAAAGACAT GCACAATAAG GAATTTGCTT 4941 || AT........ .......... .......... .......... .......... .......... 186 AATGATGAAG TGAAAAGGAC AAAGGAAATT TCTTCTTCTT TTTGATTTAG TATACAATGT 4881 .......... .......... .......... .......... .......... .......... 186 TGGATTAGTG AGAAATGGAG CCTAATTGAC ATTATGGCAA GAACATGGCT AATAAACATG 4821 .......... .......... .......... .......... .......... .......... 186 TCTATAACTA CTCATCTAGG CTGGCTTTCT CTATTAAAAA GTTGTGTGGT CCAAACCTAT 4761 .......... .......... .......... .......... .......... .......... 186 TTGTGTATGA ATATTGGTAC ACGACGAACA AATCTTAGAG GTAATAAATA TATACATTAA 4701 .......... .......... .......... .......... .......... .......... 186 CAAAAAGTGA TTTAACTTTT ATTGGTATTA GTTAATTGTT ACTGAATTCG GTGTTGCTAT 4641 .......... .......... .......... .......... .......... .......... 186 AGGCTTTAGA GACATTTACA AAAAATGTTA AAATGCCACT GAATATATAT TTTTAACAAT 4581 .......... .......... .......... .......... .......... .......... 186 AAGTATTCTA TTGTTGTTAA TTAATTTATT ATAAAGATCT TTTTTTTTTT TGTAATAGTA 4521 .......... .......... .......... .......... .......... .......... 186 CCAAACCCTA GTATTCACAC ATTGAGTGGC CATATTAAAA CGTCCAATGA TTTTTCGGCC 4461 .......... .......... .......... .......... .......... .......... 186 TATCATATTA TTTTCTTACA TATTAAGCTT CTTCAATTGA AGTTAATGCT ATTACCTTTC 4401 .......... .......... .......... .......... .......... .......... 186 TCCTACTTCG ATAGGAAGCA GTGACTTTGT TTTCGCTTTT GGGTTAGACA AAAATGATAT 4341 .......... .......... .......... .......... .......... .......... 186 AGTCTCTTTA AATAATCGAT GTATTGAATC GATGTTTTTT TAAGTTTTAT ATATTAAAAA 4281 .......... .......... .......... .......... .......... .......... 186 ACTTTTTAAA ATATTTTCAC GATCTAAGTC AATTATAAAA CTAATTGCAT TAGAATGGAG 4221 .......... .......... .......... .......... .......... .......... 186 ATTAATTTGT GGACCTAATA AATTAATGAT TAACATATTA TTACTAGGTT GAATTGCATT 4161 .......... .......... .......... .......... .......... .......... 186 GATTATGTAG AAGATACTTG CATTTAGTTG CTTTCCTCTG TCTCATTTTA TGCGACACTT 4101 .......... .......... .......... .......... .......... .......... 186 TTTCGTTTTT TCGAGAGTCA AACAGTTTAA CTTTGACCAA ACATTTGCGT GCAAAATCTT 4041 .......... .......... .......... .......... .......... .......... 186 CAATTTTTTT GAAATGAAAT TTATATATTT GTAAACTATG TAAAGAGTAC TATAAGTCAC 3981 .......... .......... .......... .......... .......... .......... 186 AATAATTGAT AATTCAAAAT ATTAAAATGA TTTATTGAAA ACTTATAGTC AAATATAGAC 3921 .......... .......... .......... .......... .......... .......... 186 TTGTTTGAAT CTCGAAATAT AAAAAATGCC ACATAAAATA GGACGAAGAA AATATATATT 3861 .......... .......... .......... .......... .......... .......... 186 TTAAATTCAA AAAAAAAAAT CAATTGGTCC TAAAAGTTAA TTATCATTAC AATTTTGGTC 3801 .......... .......... .......... .......... .......... .......... 186 ATAGACATTA CTGATTATGC CATATTTGAG TAACTTGCTC GTATTTAATA TCGTAACTTT 3741 .......... .......... .......... .......... .......... .......... 186 GCAACACTAA TGCTAGTTCC TCTAACTAAC TAACAAGAAT AATGTCCTTT TTAATAACTT 3681 .......... .......... .......... .......... .......... .......... 186 GCTCGTATGT AGTGGGTTTT TTACTTCCAA GAATGCAAAC AATACATAAA TCTCTCTCAT 3621 .......... .......... .......... .......... .......... .......... 186 TTGAAAAGTT ATAAATGATT GGATTTGAGA TCGGCGAAAC AAATTAGAGC GACAAAGTGT 3561 .......... .......... .......... .......... .......... .......... 186 TGAATCTCAG TGAATTATAG CAGCAAGATC ACTCTCTCAC TTACAATATC CATCGACGCT 3501 .......... .......... .......... .......... .......... .......... 186 TCCATTGCAG CGACTTAGCC AAAGACATTG TGGGTCGACA AACGAACAGC AAGCGCATGC 3441 .......... .......... .......... .......... .......... .......... 186 GTCACTTCTA GCTCAAATTC TGACTCAAAA GGGTATGAAC ATTGCAATTA CTACGATCAG 3381 .......... .......... .......... .......... .......... .......... 186 AATATTAGTT TATTTATACT CCCTCCGTTT AAAAAAGAAT GTCCCTATTT TCTTTTTAGA 3321 .......... .......... .......... .......... .......... .......... 186 CTGTTTCAAA AAGCATGACC CTTTCCTTCT TTGATAACAT TTTAACTTTA ACTTTTCGCG 3261 .......... .......... .......... .......... .......... .......... 186 TGATATGTTT AAGACTCCAA GATTAAAGGA CATTTTGGTA CATTTGACAT AACTTTAATT 3201 .......... .......... .......... .......... .......... .......... 186 AAAGGACATT TTAGTACATT TGACATAACT TTAATTTAGA ACCATTAGAT TAAAAAGTTC 3141 .......... .......... .......... .......... .......... .......... 186 GACTACAAGA TTAAAAGATA TTTTGATACA TTTGACATAA CTTTAATTAA AGGACATTTT 3081 .......... .......... .......... .......... .......... .......... 186 GGTACATTTG ACATAACTTT AATTTAGAAC TACAAAATTA AAAA 3037 | ||||| | || .......... .......... .......... ...ATAATTA AGAA 197 hqPGS_C06HBa0158P14.1-16-_SGN-E356257- (7280 7154) ******************************************************************************** EST sequence 48 +strand 570 n (File: SGN-E379618+) 1 AAAATGTATG TATATTGCAT AATTATAAGT GTATGGCAAG AATATATATG TTTTTGTCTC 61 GCTTTATACA AAAACAAAAA CACAATATAT ACACTTCTGT TGTATAAAGT TAGAGAAAAT 121 TGTATTTCAC TGCAATTATA TAATTCACAA TTGTATAATT CGTTGGCCTT TTTCTCTGCA 181 ATATTTGAAG TAAAATGTTT GTAATTTGTA TAATTAAGTG TATAACACGA AGATATATAT 241 TTTTACATGT GTATATACAA TTTTCTCTCG CTTTATACAA AATAGAAACA GAATTTATAC 301 ACTTCTGTGT ATATAGCGAG ATAGGCGAGC GAGAATGGAG AGTGGCGAGC GAGATTTTTG 361 GGAGGGAGAC GCCTGACAAA CTTTAGCTAA CGTTTGCTAT GGAGCACAAT TAAATCAAAC 421 TCTAGCTACT CCATTTAGTT AGATTACTAG TTTGCTATTA TATACAATTT TCCCAAGAGC 481 TTGTATAANA TGGAGAGAAG GAAAAAGATT TAGAATTATC GCTTGTGAAT GACAAGAAAA 541 GATTGCAAAA TAAGAATTTA GTTGTTTTGC Predicted gene structure (within gDNA segment 9099 to 5996): Exon 1 9099 9050 ( 50 n); cDNA 149 196 ( 48 n); score: 0.640 Intron 1 9049 8102 ( 948 n); Pd: 0.000 (s: 0.64), Pa: 0.000 (s: 0.72) Exon 2 8101 7990 ( 112 n); cDNA 197 305 ( 109 n); score: 0.799 Intron 2 7989 7831 ( 159 n); Pd: 0.000 (s: 0.87), Pa: 0.000 (s: 0.70) Exon 3 7830 7659 ( 172 n); cDNA 306 471 ( 166 n); score: 0.820 MATCH C06HBa0158P14.1-16- SGN-E379618+ 0.786 334 0.586 C PGS_C06HBa0158P14.1-16-_SGN-E379618+ (9099 9050,8101 7990,7830 7659) Alignment (genomic DNA sequence = upper lines): AAATTTATAA TTTATAATAT TTTTTTTATT TAAATTTTTT AATTTAAAAT ATCAAATTAA 9040 || | ||||| || | ||||| | | ||| ||| || |||||| AATTGTATAA TTCGTTGGCC TTTTTCT-CT GCAATATTTG AA-GTAAAAT .......... 196 TATAATCTAT TTTAACTTTA AAAAATAATA AATTTAACTT TCGAAAAATA TAATATAACA 8980 .......... .......... .......... .......... .......... .......... 196 ACTAAAAAAA ACCAATGAAA TAACATTCAT TAAAGTTATA GCAGTGTATT TTATTTTACC 8920 .......... .......... .......... .......... .......... .......... 196 TGCTCCTTAT TGTAAAAGCA ATTTATTTTT TTACATTTGT TCATAAAAAA AATAATTTAT 8860 .......... .......... .......... .......... .......... .......... 196 TACTAGTTCT TTTCAACAGT TTATATATCA AATTTAAGAA AAAAGGTAAT GGATCGTTAT 8800 .......... .......... .......... .......... .......... .......... 196 AGAGGCCCCT TTAATTTCAG CCCCCTATTT ATTTATTTTT ACATATGTAT ACATTATACT 8740 .......... .......... .......... .......... .......... .......... 196 CTTTTGTTTT AATGTATATA ATGATGTTTT AATTTTATGA GTCAAATGAG TTACCTTTTA 8680 .......... .......... .......... .......... .......... .......... 196 CTATAATATT TTATATTATT AACTATTGTG ACTTCAATAC TTATTATATA GTTTCAAACA 8620 .......... .......... .......... .......... .......... .......... 196 TATAAATTTT ATTTTTAAAA ATTTATATTT AAGCATACAA TCAAAGTTCA AAAGTTCTTA 8560 .......... .......... .......... .......... .......... .......... 196 TCCCCAAAAG TGAAAAATAA CATATAATTC GATATACAGA GAGTATTTAA ATTTGGGCAA 8500 .......... .......... .......... .......... .......... .......... 196 CTTTCACATA TAGCAAATAA AAAATTCATA TTTGTATGCT ATAGCAAAGT TTGCATAATT 8440 .......... .......... .......... .......... .......... .......... 196 GCGCTCAATA GCAAACATTG AAACTGTATA ATTCGCTATA CATATACATT TGAAGCAAAT 8380 .......... .......... .......... .......... .......... .......... 196 TGTATAAAAC AGAGTGCATA AAACAAGAAA GAGAAAGACA CTTGGGCAGA GAACTGTATA 8320 .......... .......... .......... .......... .......... .......... 196 AAAATGATAT GTATAAAACG AATTGTATTA TTATAAGTGT ATAGAATAAT TATATACAAT 8260 .......... .......... .......... .......... .......... .......... 196 TTGAATTTGT ATAAAATGAG AAAGAGAGAA AGACAAAAGA GACTTGACAA GGAATATACA 8200 .......... .......... .......... .......... .......... .......... 196 ATTGAATCGA ATTGTATAAA ATGAGAAAGA GAGAAATTAG ATACAATTTG AAAATTGTAT 8140 .......... .......... .......... .......... .......... .......... 196 AAAATGAGAA AGAGAGAAAG GCAAAAGAAA TTGCGCAGGG GAGTATTTAT TGTATAATTA 8080 | ||| | | ||||||||| .......... .......... .......... ........GT TTGTAA-T-T TGTATAATT- 215 TAAGTGTATA GGACGAAAAT ATATGTACTT GCAAGTGTAT ATACAATTTT CTCACGCTTT 8020 ||||||||| ||||| || |||| | || || |||||| |||||||||| ||| |||||| -AAGTGTATA ACACGAAGAT ATATATTTTT ACATGTGTAT ATACAATTTT CTCTCGCTTT 274 ATAC-AAACA AAAACACAAT TTATACACTT CACTTCTGTT TGTATAAGTG AGAAAGGCGG 7961 |||| ||| | ||||| ||| |||||||||| | ATACAAAATA GAAACAGAAT TTATACACTT C......... .......... .......... 305 GGGTGGCGAG CAAGATTTGG GAGAGTGGCG AGCGAGATCT GGAAGAGGGG AGAGAGGAGA 7901 .......... .......... .......... .......... .......... .......... 305 ACAAAAATAT ATGTATTTAT ACAATTTTCT CTACTTTATC AATTATAAAC AATTTTTATA 7841 .......... .......... .......... .......... .......... .......... 305 CACTTCTGTT TGTATAAAAA GTGAGGAAGC GAACGAGAGA TTAGAGGAGA GTAGCGAGCG 7781 ||| || | | | ||| || | |||| || | ||||| || ||||||| .......... TGTGTATATA GCGAGATAG- G--CGAGCGA -GAATGGAGA GTGGCGAGCG 351 AGATATTTGG GAGAGAGGCG CCTGACAATT TTTTTGCAAA CGTTAGCTAT GGAGCACAAT 7721 |||| ||||| ||| ||| || |||||||| ||| || || |||| ||||| |||||||||| AGATTTTTGG GAGGGAGACG CCTGACAA-A CTTTAGCTAA CGTTTGCTAT GGAGCACAAT 410 TAAATCAAAC CCTAGCTACT CCATTTATTT TAGGTTATTA GTTTGCTATT ATATAAGATT 7661 |||||||||| ||||||||| ||||||| | ||| ||| || |||||||||| ||||| ||| TAAATCAAAC TCTAGCTACT CCATTTA-GT TAGATTACTA GTTTGCTATT ATATACAATT 469 TT 7659 || TT 471 hqPGS_C06HBa0158P14.1-16-_SGN-E379618+ (8101 7990,7830 7659) ******************************************************************************** EST sequence 66 +strand 612 n (File: SGN-E394609+) 1 TAAAATGTAT GTATATTGCA TAATTATAAG TGTATGGCAA GAATATATAT GTTTTTGTCT 61 CGCTTTATAC AAAAACAAAA ACACAATATA TACACTTCTG TTGTATAAAG TTAGAGAAAA 121 TTGTATTTCA CTGCAATTAT ATAATTCACA ATTGTATAAT TCGTTGGCCT TTTTCTCTGC 181 AATATTTGAA GTAAAATGTT TGTAATTTGT ATAATTAAGT GTATAACACG AAGATATATA 241 TTTTTACATG TGTATATACA ATTTTCTCTC GCTTTATACA AAATAGAAAC AGAATTTATA 301 CACTTCTGTG TATATAGCGA GATAGGCGAG CGAGAATGGA GAGTGGCGAG CGAGATTTTT 361 GGGAGGGAGA CGCCTGACAA ACTTTAGCTA ACGTTTGCTA TGGAGCACAA TTAAATCAAA 421 CTCTAGCTAC TCCATTTAGT TAGATTACTA GTTTGCTATT ATATACAATT TTCCCAAGAG 481 CTTGTATAAA ATGGAGAGAA GGAAAAAGAT TTAGAATTAT CGCTTGTGAA TGACAAGAAA 541 AGATTGCAAA ATAAGAATTT AGTTGTTTTG CTTTAATAAG TTCCTTAATC ATTTCATTAG 601 GGGTGTAATA AT Predicted gene structure (within gDNA segment 9099 to 5586): Exon 1 9099 9050 ( 50 n); cDNA 150 197 ( 48 n); score: 0.640 Intron 1 9049 8102 ( 948 n); Pd: 0.000 (s: 0.64), Pa: 0.000 (s: 0.72) Exon 2 8101 7990 ( 112 n); cDNA 198 306 ( 109 n); score: 0.799 Intron 2 7989 7831 ( 159 n); Pd: 0.000 (s: 0.87), Pa: 0.000 (s: 0.70) Exon 3 7830 7659 ( 172 n); cDNA 307 472 ( 166 n); score: 0.820 MATCH C06HBa0158P14.1-16- SGN-E394609+ 0.786 334 0.546 C PGS_C06HBa0158P14.1-16-_SGN-E394609+ (9099 9050,8101 7990,7830 7659) Alignment (genomic DNA sequence = upper lines): AAATTTATAA TTTATAATAT TTTTTTTATT TAAATTTTTT AATTTAAAAT ATCAAATTAA 9040 || | ||||| || | ||||| | | ||| ||| || |||||| AATTGTATAA TTCGTTGGCC TTTTTCT-CT GCAATATTTG AA-GTAAAAT .......... 197 TATAATCTAT TTTAACTTTA AAAAATAATA AATTTAACTT TCGAAAAATA TAATATAACA 8980 .......... .......... .......... .......... .......... .......... 197 ACTAAAAAAA ACCAATGAAA TAACATTCAT TAAAGTTATA GCAGTGTATT TTATTTTACC 8920 .......... .......... .......... .......... .......... .......... 197 TGCTCCTTAT TGTAAAAGCA ATTTATTTTT TTACATTTGT TCATAAAAAA AATAATTTAT 8860 .......... .......... .......... .......... .......... .......... 197 TACTAGTTCT TTTCAACAGT TTATATATCA AATTTAAGAA AAAAGGTAAT GGATCGTTAT 8800 .......... .......... .......... .......... .......... .......... 197 AGAGGCCCCT TTAATTTCAG CCCCCTATTT ATTTATTTTT ACATATGTAT ACATTATACT 8740 .......... .......... .......... .......... .......... .......... 197 CTTTTGTTTT AATGTATATA ATGATGTTTT AATTTTATGA GTCAAATGAG TTACCTTTTA 8680 .......... .......... .......... .......... .......... .......... 197 CTATAATATT TTATATTATT AACTATTGTG ACTTCAATAC TTATTATATA GTTTCAAACA 8620 .......... .......... .......... .......... .......... .......... 197 TATAAATTTT ATTTTTAAAA ATTTATATTT AAGCATACAA TCAAAGTTCA AAAGTTCTTA 8560 .......... .......... .......... .......... .......... .......... 197 TCCCCAAAAG TGAAAAATAA CATATAATTC GATATACAGA GAGTATTTAA ATTTGGGCAA 8500 .......... .......... .......... .......... .......... .......... 197 CTTTCACATA TAGCAAATAA AAAATTCATA TTTGTATGCT ATAGCAAAGT TTGCATAATT 8440 .......... .......... .......... .......... .......... .......... 197 GCGCTCAATA GCAAACATTG AAACTGTATA ATTCGCTATA CATATACATT TGAAGCAAAT 8380 .......... .......... .......... .......... .......... .......... 197 TGTATAAAAC AGAGTGCATA AAACAAGAAA GAGAAAGACA CTTGGGCAGA GAACTGTATA 8320 .......... .......... .......... .......... .......... .......... 197 AAAATGATAT GTATAAAACG AATTGTATTA TTATAAGTGT ATAGAATAAT TATATACAAT 8260 .......... .......... .......... .......... .......... .......... 197 TTGAATTTGT ATAAAATGAG AAAGAGAGAA AGACAAAAGA GACTTGACAA GGAATATACA 8200 .......... .......... .......... .......... .......... .......... 197 ATTGAATCGA ATTGTATAAA ATGAGAAAGA GAGAAATTAG ATACAATTTG AAAATTGTAT 8140 .......... .......... .......... .......... .......... .......... 197 AAAATGAGAA AGAGAGAAAG GCAAAAGAAA TTGCGCAGGG GAGTATTTAT TGTATAATTA 8080 | ||| | | ||||||||| .......... .......... .......... ........GT TTGTAA-T-T TGTATAATT- 216 TAAGTGTATA GGACGAAAAT ATATGTACTT GCAAGTGTAT ATACAATTTT CTCACGCTTT 8020 ||||||||| ||||| || |||| | || || |||||| |||||||||| ||| |||||| -AAGTGTATA ACACGAAGAT ATATATTTTT ACATGTGTAT ATACAATTTT CTCTCGCTTT 275 ATAC-AAACA AAAACACAAT TTATACACTT CACTTCTGTT TGTATAAGTG AGAAAGGCGG 7961 |||| ||| | ||||| ||| |||||||||| | ATACAAAATA GAAACAGAAT TTATACACTT C......... .......... .......... 306 GGGTGGCGAG CAAGATTTGG GAGAGTGGCG AGCGAGATCT GGAAGAGGGG AGAGAGGAGA 7901 .......... .......... .......... .......... .......... .......... 306 ACAAAAATAT ATGTATTTAT ACAATTTTCT CTACTTTATC AATTATAAAC AATTTTTATA 7841 .......... .......... .......... .......... .......... .......... 306 CACTTCTGTT TGTATAAAAA GTGAGGAAGC GAACGAGAGA TTAGAGGAGA GTAGCGAGCG 7781 ||| || | | | ||| || | |||| || | ||||| || ||||||| .......... TGTGTATATA GCGAGATAG- G--CGAGCGA -GAATGGAGA GTGGCGAGCG 352 AGATATTTGG GAGAGAGGCG CCTGACAATT TTTTTGCAAA CGTTAGCTAT GGAGCACAAT 7721 |||| ||||| ||| ||| || |||||||| ||| || || |||| ||||| |||||||||| AGATTTTTGG GAGGGAGACG CCTGACAA-A CTTTAGCTAA CGTTTGCTAT GGAGCACAAT 411 TAAATCAAAC CCTAGCTACT CCATTTATTT TAGGTTATTA GTTTGCTATT ATATAAGATT 7661 |||||||||| ||||||||| ||||||| | ||| ||| || |||||||||| ||||| ||| TAAATCAAAC TCTAGCTACT CCATTTA-GT TAGATTACTA GTTTGCTATT ATATACAATT 470 TT 7659 || TT 472 hqPGS_C06HBa0158P14.1-16-_SGN-E394609+ (8101 7990,7830 7659) ******************************************************************************** EST sequence 11 -strand 680 n (File: SGN-E379333-) 1 ATCGAATTAA ATAAGCTATG TGTATATATT AAATGTAGAG GAGAAAGAGA GGGAATAATT 61 TAGAATTAAG GGTAAAATAA AATGGTTCAT ATTATATTTT TTAATGGGTC GGGTTAGGTG 121 GGTGGATCAC TAAATAGTAT TTTTTATTTT TTTAAAAAAT TTTGATTTGT TATATAAACA 181 ATTAACGTAA ATAAATTTTA ATTTAAAAAG TAATTTAATA GATTGAGTGA CTTGAGGAAA 241 AAATAAATAG TTGAGTCACT TTTGAGTTAA AATTCAAAGT TGAGTCACTT TTTGAGAAAT 301 GTATGGATAA TTGAATACTT TTAAGGAAAA ATTGAAAGTT GAGTGACTTT TTGAGAGAAA 361 GTATGGGTGG AATCCCCCGA GAAGAGTTAG AATGACCGTT CCCGCTCCTT CGGCGATACC 421 AAACAAATGA CTATTTGAAT CGGGGTTTTG AGCACAAAGA TTAGTTGAAT GACCATCTAA 481 AGTATTAACT CGGAGATAAA CTGATTTTGG AAGAACTATT TTCATATGTC CATGATACAT 541 TATTGGGCAA CTTTTACATA TAGCAAATAA AAAATTCATA TTTGTATGCT AGCAAACTTT 601 GCATAATTGC GCTGCATAGC AAACATAAAA CTGTATAATT TGCTATACAT ATACAATTGT 661 ATAATTCGCT GGCCTAAATT Predicted gene structure (within gDNA segment 9099 to 7165): Exon 1 8507 8379 ( 129 n); cDNA 543 666 ( 124 n); score: 0.891 MATCH C06HBa0158P14.1-16- SGN-E379333- 0.891 129 0.190 C PGS_C06HBa0158P14.1-16-_SGN-E379333- (8507 8379) Alignment (genomic DNA sequence = upper lines): TTGGGCAACT TTCACATATA GCAAATAAAA AATTCATATT TGTATGCTAT AGCAAAGTTT 8448 |||||||||| || ||||||| |||||||||| |||||||||| ||||||| | |||||| ||| TTGGGCAACT TTTACATATA GCAAATAAAA AATTCATATT TGTATGC--T AGCAAACTTT 600 GCATAATTGC GCTCAATAGC AAACATTGAA ACTGTATAAT TCGCTATACA TATACATTTG 8388 |||||||||| ||| ||||| ||||| | || |||||||||| | |||||||| |||||| ||| GCATAATTGC GCTGCATAGC AAACA-TAAA ACTGTATAAT TTGCTATACA TATACAATTG 659 AAGCAAATT 8379 | |||| TA--TAATT 666 hqPGS_C06HBa0158P14.1-16-_SGN-E379333- (8507 8379) ******************************************************************************** EST sequence 25 -strand 372 n (File: SGN-E200682-) 1 AATTGAATAC TTTTAAGGAA AAATTGAAAG TTGAGTGACT TTTTGAGAGA AAGTATGGGT 61 GGAATCCCCC GAGAAGAGTT AGAATGACCG TTCCCGCTCC TTCGGCGATA CCAAACAAAT 121 GACTATTTGA ATCGGGGTTT TGAGCACAAA GATTAGTTGA ATGACCATCT AAAGTATTAA 181 CTCGGAGATA AACTGATTTT GGAAGAACTA TTTTCATATG TCCATGATAC ATTATTGGGC 241 AACTTTTACA TATAGCAAAT AAAAAATTCA TATTTGTATG CTAGCAAACT TTGCATAATT 301 GCGCTGCATA GCAAACATAA AACTGTATAA TTTGCTATAC ATATACAATT GTATAATTCG 361 CTGGCCTAAA TT Predicted gene structure (within gDNA segment 9099 to 7165): Exon 1 8507 8379 ( 129 n); cDNA 235 358 ( 124 n); score: 0.891 MATCH C06HBa0158P14.1-16- SGN-E200682- 0.891 129 0.347 C PGS_C06HBa0158P14.1-16-_SGN-E200682- (8507 8379) Alignment (genomic DNA sequence = upper lines): TTGGGCAACT TTCACATATA GCAAATAAAA AATTCATATT TGTATGCTAT AGCAAAGTTT 8448 |||||||||| || ||||||| |||||||||| |||||||||| ||||||| | |||||| ||| TTGGGCAACT TTTACATATA GCAAATAAAA AATTCATATT TGTATGC--T AGCAAACTTT 292 GCATAATTGC GCTCAATAGC AAACATTGAA ACTGTATAAT TCGCTATACA TATACATTTG 8388 |||||||||| ||| ||||| ||||| | || |||||||||| | |||||||| |||||| ||| GCATAATTGC GCTGCATAGC AAACA-TAAA ACTGTATAAT TTGCTATACA TATACAATTG 351 AAGCAAATT 8379 | |||| TA--TAATT 358 hqPGS_C06HBa0158P14.1-16-_SGN-E200682- (8507 8379) ******************************************************************************** EST sequence 12 -strand 680 n (File: SGN-E379427-) 1 AAAACTTGCA AAACGGAATG GGCCTATTCA CATCAGATCA AGTTTTGTTC ACAGACCAAA 61 GGTCTAAAGG TACTGTTAAT TTGTGGGCCA GTAATTCTAA AGTTTTTGAA ACCGCATTTG 121 TTAATGCGAT GACTAAATTG GGCCGAGTTG GTGTGAAGAC GGGTAAGAAT GGAAATATTC 181 GTATAGACTG TGGAGCATTT AATTAAGGGC AACTTTCACG TATAGCAAAT AAAAAATTCA 241 TATTTGTATG TTATAACAAA GTTTGCATAA TTGCGCTCCA TAGCAAACAT AAAACTGTAT 301 AATTCGCTAT ACATATACAA TTGTATAATT CGCTGGCCTA AATTGTATAA TTTGATGGCC 361 TATTTCGCTG CAATTGTATA ATTCGCTATC TTCATTCACT GCGATTGTGT AATGCACAAT 421 CGTATAAATC GCTGCTTATT TCGCTGCAAT ATTTTTATAA ATTTGCTTTG CATACCGTTG 481 AATCGAATTA AAATGTATGT ATATTGCATA ATTATAAGTG TATGGCAAGA ATATATATGT 541 TTTTGTCTCG CTTTATACAA AAACAAAAAC ACAATATATA CACTTCTGTT GTATAAAGTT 601 AGAGAAAATT GTATTTCACT GCAATTATAT AATTCACAAT TGTATAATTC GTTGCCCTTT 661 TTCTGAACAA TATTTGAAGT Predicted gene structure (within gDNA segment 9099 to 4182): Exon 1 8518 8388 ( 131 n); cDNA 194 323 ( 130 n); score: 0.916 MATCH C06HBa0158P14.1-16- SGN-E379427- 0.916 131 0.193 C PGS_C06HBa0158P14.1-16-_SGN-E379427- (8518 8388) Alignment (genomic DNA sequence = upper lines): AGTATTTAAA TTTGGGCAAC TTTCACATAT AGCAAATAAA AAATTCATAT TTGTATGCTA 8459 || |||||| | ||||||| |||||| ||| |||||||||| |||||||||| ||||||| || AGCATTTAAT TAAGGGCAAC TTTCACGTAT AGCAAATAAA AAATTCATAT TTGTATGTTA 253 TAGCAAAGTT TGCATAATTG CGCTCAATAG CAAACATTGA AACTGTATAA TTCGCTATAC 8399 || ||||||| |||||||||| ||||| |||| |||||| | | |||||||||| |||||||||| TAACAAAGTT TGCATAATTG CGCTCCATAG CAAACA-TAA AACTGTATAA TTCGCTATAC 312 ATATACATTT G 8388 ||||||| || | ATATACAATT G 323 hqPGS_C06HBa0158P14.1-16-_SGN-E379427- (8518 8388) ******************************************************************************** EST sequence 1 -strand 701 n (File: SGN-E578389-) 1 TCAAATAATT ATAATAAATA AGTCAAAAAA ATAATTTATG TATTAAAAAA ATTTGAAATA 61 TACCTTGAAC TTTGAAAAAA GAATCATATA TGCCCCTAAA TATATTTTTT TTTAAAATTA 121 AAGTAAAATT ATAAATTTAA AAGTAATTTT TTCACTTTCG TTAAATGAAG GGTATATATG 181 AGCTCATTTT GTAACGGCAG AGGTATATGT GAACCATTTG TATAACGGTA AGGGTATATA 241 TGAGCCACTT TCATAACGAG GGGTATATCA GTTTCAAATG ACAAAGTTGA GGGGTATATC 301 ATACCCTTTT CCCATAATAT TATTCATTTT TGGGTTGACG GGTCAAACCT TGGGCTGCTT 361 AGGACTTGAT TAGACCGCTA TTTTATTGAC TCTTTAATTA ATGGGCAACT TTCACATATA 421 ACAAACAAAA AATTCATATT TGTATGCTAT AACAAAGTTT GCATAATTGC GCTCCATAGC 481 AAACATAAAA TTGTATAATT CGCTGACCTA AATTGTATAA TTCGCTGGCC TATTTCGCTG 541 CAATTGTATA ATTCGCTATC CTATTTAACT ACAATTGTAT AATTCGCTGC CTATTTCGCT 601 GCAATATTAT TATAAAATTT GCTTTGCATA TAATTGAACC GAATTAAAAT GTATGTATAT 661 TGCATAATTA TAAGTGTATA GCAATAAGAT ATATGTTTTT C Predicted gene structure (within gDNA segment 9099 to 5564): Exon 1 8514 8403 ( 112 n); cDNA 393 504 ( 112 n); score: 0.897 MATCH C06HBa0158P14.1-16- SGN-E578389- 0.897 112 0.160 C PGS_C06HBa0158P14.1-16-_SGN-E578389- (8514 8403) Alignment (genomic DNA sequence = upper lines): TTTAAAT-TT GGGCAACTTT CACATATAGC AAATAAAAAA TTCATATTTG TATGCTATAG 8456 ||||| | | |||||||||| |||||||| | ||| |||||| |||||||||| ||||||||| TTTAATTAAT GGGCAACTTT CACATATAAC AAACAAAAAA TTCATATTTG TATGCTATAA 452 CAAAGTTTGC ATAATTGCGC TCAATAGCAA ACATTGAAAC TGTATAATTC GCT 8403 |||||||||| |||||||||| || ||||||| ||| | ||| |||||||||| ||| CAAAGTTTGC ATAATTGCGC TCCATAGCAA ACA-TAAAAT TGTATAATTC GCT 504 hqPGS_C06HBa0158P14.1-16-_SGN-E578389- (8514 8403) ******************************************************************************** EST sequence 35 -strand 584 n (File: SGN-E378080-) 1 TCAATTTGGA TCAACTCAAT ACAATGTTTG CCTCTCATGG TTTAAATCAG GCTAATATGA 61 TTGCCTTATC TGCGGCCCAT ACTGTTGGAT TTTCTCACTG CGACCAATTC TCGAACCGAA 121 TTTTCAACTT TAACCCTAAA AACCCAGTGG ATCCAAGTCT CAACAAGACG TATGCAGCCC 181 AATTAGAACA AATGTGTCCG AAAAATGTGG ACCCAAGAAT AGCCATCAAC ATGGACCCAA 241 TAACACCTAG GGCTTTTGAC AATGTGTATT TCCAAAACTT GCAAAACGGA ATGGGCCTAT 301 TCACATCAGA TCAAGTTTTG TTCACAGACC AAAGGTCTAA AGGTACTGTT AATTTGTGGG 361 CCAGTAATTT TAAAGTTTTT GAAACCGCAT TTGTTAATGC GATGACTAAA TTGGGCCGAG 421 TTGGTGTGAA GACGGGTAAG AATGGAAATA TTCGTATAGA CTGTGGAGCA TTTAATTAAG 481 GGCAACTTTC ACGTATAGCA AATAAAAAAT TCATATTTGT ATGTTATAAC AAAGTTTGCA 541 TAATTGCGCT CCATAGCAAA AAAAAAAAAA AAAAAAAAAA AAAA Predicted gene structure (within gDNA segment 9099 to 7504): Exon 1 8518 8415 ( 104 n); cDNA 467 570 ( 104 n); score: 0.865 Intron 1 8414 8368 ( 47 n); Pd: 0.677 (s: 0.82), Pa: 0.980 (s: 0) Exon 2 8367 8354 ( 14 n); cDNA 571 584 ( 14 n); score: 0.571 MATCH C06HBa0158P14.1-16- SGN-E378080- 0.865 118 0.202 C PGS_C06HBa0158P14.1-16-_SGN-E378080- (8518 8415,8367 8354) Alignment (genomic DNA sequence = upper lines): AGTATTTAAA TTTGGGCAAC TTTCACATAT AGCAAATAAA AAATTCATAT TTGTATGCTA 8459 || |||||| | ||||||| |||||| ||| |||||||||| |||||||||| ||||||| || AGCATTTAAT TAAGGGCAAC TTTCACGTAT AGCAAATAAA AAATTCATAT TTGTATGTTA 526 TAGCAAAGTT TGCATAATTG CGCTCAATAG CAAACATTGA AACTGTATAA TTCGCTATAC 8399 || ||||||| |||||||||| ||||| |||| |||| | | || TAACAAAGTT TGCATAATTG CGCTCCATAG CAAAAAAAAA AAAA...... .......... 570 ATATACATTT GAAGCAAATT GTATAAAACA GAGTGCATAA AACAA 8354 | | || || || .......... .......... .......... .AAAAAAAAA AAAAA 584 hqPGS_C06HBa0158P14.1-16-_SGN-E378080- (8518 8415) Total number of EST alignments reported: 76 ________________________________________________________________________________ Predicted gene locations (1) in segment 1 to 9099: PGL 1 (- strand): 9099 4362 AGS-1 (8101 7990,7830 7649,6796 6761,6432 6403,5778 5774,4386 4362) SCR (e 0.837 d 0.000 a 0.000,e 0.820 d 0.000 a 0.982,e 0.583 d 0.000 a 0.930,e 0.667 d 0.000 a 0.961,e 0.800 d 0.000 a 0.795,e 0.720) Exon 1 8101 7990 ( 112 n); score: 0.837 Intron 1 7989 7831 ( 159 n); Pd: 0.000 Pa: 0.000 Exon 2 7830 7649 ( 182 n); score: 0.820 Intron 2 7648 6797 ( 852 n); Pd: 0.000 Pa: 0.982 Exon 3 6796 6761 ( 36 n); score: 0.583 Intron 3 6760 6433 ( 328 n); Pd: 0.000 Pa: 0.930 Exon 4 6432 6403 ( 30 n); score: 0.667 Intron 4 6402 5779 ( 624 n); Pd: 0.000 Pa: 0.961 Exon 5 5778 5774 ( 5 n); score: 0.800 Intron 5 5773 4387 (1387 n); Pd: 0.000 Pa: 0.795 Exon 6 4386 4362 ( 25 n); score: 0.720 PGS (8101 7990,7830 7649,6796 6761,6432 6403,5778 5774,4386 4362) SGN-E379112- PGS (8090 7990,7830 7649,6796 6761,6432 6403,5778 5774,4386 4362) SGN-E394141- PGS (8075 7990,7830 7649,6796 6761,6432 6403,5778 5774,4386 4362) SGN-E392605- PGS (8101 7990,7830 7659) SGN-E379618+ PGS (8101 7990,7830 7659) SGN-E394609+ 3-phase translation of AGS-1 (-strand): . . . . . . 8101 GGGAGTATTTATTGTATAATTATAAGTGTATAGGACGAAAATATATGTACTTGCAAGTGT G S I Y C I I I S V - D E N I C T C K C G V F I V - L - V Y R T K I Y V L A S V E Y L L Y N Y K C I G R K Y M Y L Q V . . . . . . : 8041 ATATACAATTTTCTCACGCTTTATACAAACAAAAACACAATTTATACACTTC : TGTATAAA I Y N F L T L Y T N K N T I Y T L : L Y K Y T I F S R F I Q T K T Q F I H F : C I K Y I Q F S H A L Y K Q K H N L Y T S : V - . . . . . . 7822 AAGTGAGGAAGCGAACGAGAGATTAGAGGAGAGTAGCGAGCGAGATATTTGGGAGAGAGG K - G S E R E I R G E - R A R Y L G E R S E E A N E R L E E S S E R D I W E R G K V R K R T R D - R R V A S E I F G R E . . . . . . 7762 CGCCTGACAATTTTTTTGCAAACGTTAGCTATGGAGCACAATTAAATCAAACCCTAGCTA R L T I F L Q T L A M E H N - I K P - L A - Q F F C K R - L W S T I K S N P S Y A P D N F F A N V S Y G A Q L N Q T L A . . . . . . : 7702 CTCCATTTATTTTAGGTTATTAGTTTGCTATTATATAAGATTTTGTCTATATAA : GGTAAA L H L F - V I S L L L Y K I L S I - : G K S I Y F R L L V C Y Y I R F C L Y K : V K T P F I L G Y - F A I I - D F V Y I : R - . . . : . . . : 6790 AGAAAGAGGGTTGGAATAAGAAAAATAAGA : AAGGCTTGATGAATGAAAGTAGTGAGATTA : R K R V G I R K I R : K A - - M K V V R L : E R G L E - E K - E : R L D E - K - - D Y : K K E G W N K K N K : K G L M N E S S E I : . : . . 5778 CAAAC : GAAGCAGTGACTTTGTTTTCGCTTT Q T : K Q - L C F R F K : R S S D F V F A T N : E A V T L F S L Maximal non-overlapping open reading frames (>= 64 codons): none AGS-2 (6386 6291,6140 5397) SCR (e 0.948 d 0.000 a 0.000,e 0.821) Exon 1 6386 6291 ( 96 n); score: 0.948 Intron 1 6290 6141 ( 150 n); Pd: 0.000 Pa: 0.000 Exon 2 6140 5397 ( 744 n); score: 0.821 PGS (5862 5397) SGN-E351546+ PGS (5862 5397) SGN-E356206+ PGS (5862 5397) SGN-E356696+ PGS (5781 5397) SGN-E392027- PGS (5778 5398) SGN-E542084- PGS (5778 5516) SGN-E336814+ PGS (5778 5516) SGN-E373117+ PGS (5778 5516) SGN-E373116- PGS (5729 5516) SGN-E298638+ PGS (6386 6291,6140 5542) SGN-E546506- PGS (5751 5545) SGN-E216150- PGS (5707 5545) SGN-E238551+ PGS (5707 5545) SGN-E368629+ PGS (5700 5545) SGN-E352844+ PGS (5810 5551) SGN-E222578- PGS (6094 5687) SGN-E246710+ PGS (6022 5787) SGN-E209683+ PGS (6094 5840) SGN-E357033- PGS (6094 5975) SGN-E391780+ 3-phase translation of AGS-2 (-strand): . . . . . . 6386 GTTCCGGTACCAGGATAGTATATGAGGATCGGAGTATCACGTTCCGACACCAGGATAATA V P V P G - Y M R I G V S R S D T R I I F R Y Q D S I - G S E Y H V P T P G - Y S G T R I V Y E D R S I T F R H Q D N . . . . : . . 6326 TATGGATCGGGTGCCACGTTCCGGTACCAGGATAGA : ATGAGGATCGGAGTGTCACGTTCC Y G S G A T F R Y Q D R : M R I G V S R S M D R V P R S G T R I E : - G S E C H V P I W I G C H V P V P G - : N E D R S V T F . . . . . . 6116 GACACCAGGATAGTATATTGAGGAGCGGAGTGTCACGTACCGACACGAGGGGAATAAAGA D T R I V Y - G A E C H V P T R G E - R T P G - Y I E E R S V T Y R H E G N K D R H Q D S I L R S G V S R T D T R G I K . . . . . . 6056 TAATGAATTTTGAAAGATGTTAATATGTTCAATCTAATGAACCTAATTCCCAAATGAGTA - - I L K D V N M F N L M N L I P K - V N E F - K M L I C S I - - T - F P N E Y I M N F E R C - Y V Q S N E P N S Q M S . . . . . . 5996 TGATGAGGAGGCGTGAGTCCTCATTGATGTGCTTGGTGTTGCAACCAAGGGTTATGGTAA - - G G V S P H - C A W C C N Q G L W - D E E A - V L I D V L G V A T K G Y G N M M R R R E S S L M C L V L Q P R V M V . . . . . . 5936 CTGTAAATGCTGCATGCTAAGGATATTAGTTGATTTTATGATATTGCTTAACATATACTG L - M L H A K D I S - F Y D I A - H I L C K C C M L R I L V D F M I L L N I Y C T V N A A C - G Y - L I L - Y C L T Y T . . . . . . 5876 TTTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGTTTTGTACTGACCCCT F S I L S W P M I S T Q Y P C F V L T P F L F - V G R - Y L L S T R V L Y - P L V F Y F E L A D D I Y S V P V F C T D P . . . . . . 5816 ACTTTTATGTTTTCTTCTTTGTTATTTGTGGAGTGCAGCAAACGTGCCGTCGTCTTCAAC T F M F S S L L F V E C S K R A V V F N L L C F L L C Y L W S A A N V P S S S T Y F Y V F F F V I C G V Q Q T C R R L Q . . . . . . 5756 TCAACAGTAATTCAAGCCAGTCTTTACTACACCGGAAATTCAGGGTGAGCTAATGTTTCT S T V I Q A S L Y Y T G N S G - A N V S Q Q - F K P V F T T P E I Q G E L M F L L N S N S S Q S L L H R K F R V S - C F . . . . . . 5696 AGCTTGGACTGGATCTTTTTCTTCAAGTCTTGATGCCTTGAACTTCCGGCATGGACTAGC S L D W I F F F K S - C L E L P A W T S A W T G S F S S S L D A L N F R H G L A - L G L D L F L Q V L M P - T S G M D - . . . . . . 5636 TTTTACTTGTTTTAGCTTTTAGAATACTCTTAGTTTAGTAATTGATCATAGATGTTCTTG F Y L F - L L E Y S - F S N - S - M F L F T C F S F - N T L S L V I D H R C S C L L L V L A F R I L L V - - L I I D V L . . . . . . 5576 TGATGATGACTTCCAGATTTTGGGAAATAATAATAGTTATTGATTTTATTAATGAGTTTA - - - L P D F G K - - - L L I L L M S L D D D F Q I L G N N N S Y - F Y - - V - V M M T S R F W E I I I V I D F I N E F . . . . . . 5516 AGTCTTCCGCATTATTTACTGTTGATATTATATTGAAATGTTAGAGTTTAGATTGGTTGG S L P H Y L L L I L Y - N V R V - I G W V F R I I Y C - Y Y I E M L E F R L V G K S S A L F T V D I I L K C - S L D W L . . . . . . 5456 TTCGCTCACATAGGAGGGTAAGTGTGGGTGCCAGTCACGGTCCGGATTTGGGTCGTGACA F A H I G G - V W V P V T V R I W V V T S L T - E G K C G C Q S R S G F G S - V R S H R R V S V G A S H G P D L G R D Maximal non-overlapping open reading frames (>= 64 codons): none AGS-3 (7487 7464,5783 5526) SCR (e 0.750 d 0.000 a 0.792,e 0.845) Exon 1 7487 7464 ( 24 n); score: 0.750 Intron 1 7463 5784 (1680 n); Pd: 0.000 Pa: 0.792 Exon 2 5783 5526 ( 258 n); score: 0.845 PGS (7487 7464,5783 5526) SGN-E370357- 3-phase translation of AGS-3 (-strand): . . . : . . . 7487 CCTACTTAATAATTGACACTAGAT : TGCAGCAAACGTGCCGTCGTCTTCAACTCAACAGTA P T - - L T L D : C S K R A V V F N S T V L L N N - H - I : A A N V P S S S T Q Q - Y L I I D T R : L Q Q T C R R L Q L N S . . . . . . 5747 ATTCAAGCCAGTCTTTACTACACCGGAAATTCAGGGTGAGCTAATGTTTCTAGCTTGGAC I Q A S L Y Y T G N S G - A N V S S L D F K P V F T T P E I Q G E L M F L A W T N S S Q S L L H R K F R V S - C F - L G . . . . . . 5687 TGGATCTTTTTCTTCAAGTCTTGATGCCTTGAACTTCCGGCATGGACTAGCTTTTACTTG W I F F F K S - C L E L P A W T S F Y L G S F S S S L D A L N F R H G L A F T C L D L F L Q V L M P - T S G M D - L L L . . . . . . 5627 TTTTAGCTTTTAGAATACTCTTAGTTTAGTAATTGATCATAGATGTTCTTGTGATGATGA F - L L E Y S - F S N - S - M F L - - - F S F - N T L S L V I D H R C S C D D D V L A F R I L L V - - L I I D V L V M M . . . . . 5567 CTTCCAGATTTTGGGAAATAATAATAGTTATTGATTTTATTA L P D F G K - - - L L I L L F Q I L G N N N S Y - F Y T S R F W E I I I V I D F I Maximal non-overlapping open reading frames (>= 64 codons): none AGS-4 (9099 9072,9026 8986,7280 6263,6148 5645) SCR (e 0.714 d 0.000 a 0.000,e 0.671 d 0.000 a 0.000,e 0.810 d 0.000 a 0.000,e 0.793) Exon 1 9099 9072 ( 28 n); score: 0.714 Intron 1 9071 9027 ( 45 n); Pd: 0.000 Pa: 0.000 Exon 2 9026 8986 ( 41 n); score: 0.671 Intron 2 8985 7281 (1705 n); Pd: 0.000 Pa: 0.000 Exon 3 7280 6263 (1018 n); score: 0.810 Intron 3 6262 6149 ( 114 n); Pd: 0.000 Pa: 0.000 Exon 4 6148 5645 ( 504 n); score: 0.793 PGS (6461 6263,6148 5645) SGN-E241789- PGS (6672 6392) SGN-E347579+ PGS (6661 6394) SGN-E349726+ PGS (6757 6397) SGN-E578076+ PGS (6661 6404) SGN-E357559+ PGS (7235 6581) SGN-E349296+ PGS (7282 6721) SGN-E550322- PGS (9099 9072,9026 8986,7280 6735) SGN-E396056- PGS (7282 6735) SGN-E550212- PGS (7282 6735) SGN-E550201- PGS (7282 6735) SGN-E550335- PGS (7282 6735) SGN-E550484- PGS (7282 6735) SGN-E550211- PGS (7282 6735) SGN-E550025- PGS (7282 6735) SGN-E389834- PGS (7280 6735) SGN-E389553+ PGS (7280 6735) SGN-E550140+ PGS (7280 6735) SGN-E550065- PGS (7280 6735) SGN-E396039- PGS (7280 6735) SGN-E390013- PGS (7280 6735) SGN-E550207- PGS (7280 6735) SGN-E549941- PGS (7280 6735) SGN-E377133- PGS (7280 6735) SGN-E231589- PGS (7280 6735) SGN-E374999- PGS (7280 6735) SGN-E396054- PGS (7280 6735) SGN-E396058- PGS (7275 6735) SGN-E550464- PGS (7270 6735) SGN-E241959- PGS (7197 6735) SGN-E236652- PGS (7178 6735) SGN-E396070- PGS (7280 6798) SGN-E550127+ PGS (7280 6798) SGN-E398551+ PGS (7280 6801) SGN-E396038+ PGS (7161 6820) SGN-E356257+ PGS (7280 6827) SGN-E396057+ PGS (7280 6827) SGN-E377132+ PGS (7066 6837) SGN-E396037- PGS (7280 6855) SGN-E396055+ PGS (7280 6908) SGN-E396069+ PGS (7280 6917) SGN-E374998+ PGS (7281 7003) SGN-E252199+ PGS (7280 7154) SGN-E356257- 3-phase translation of AGS-4 (-strand): . . . : . . . 9099 AAATTTATAATTTATAATATTTTTTTTA : AACTTTAAAAAATAATAAATTTAACTTTCGAA K F I I Y N I F F : K L - K I I N L T F E N L - F I I F F L : N F K K - - I - L S K I Y N L - Y F F - : T L K N N K F N F R . : . . . . . 8994 AAATATAAT : TGTAACGACCTGTTTAGTCATTTTGAGCAGCAGATTTTATTTCTGGAAAAA K Y N : C N D L F S H F E Q Q I L F L E K N I I : V T T C L V I L S S R F Y F W K N K I - : L - R P V - S F - A A D F I S G K . . . . . . 7229 TAGGCTGAGGCAACGGATCCCACGACGGACCGTCATGGGCACGACGGACCGTCGCAGGGT - A E A T D P T T D R H G H D G P S Q G R L R Q R I P R R T V M G T T D R R R V I G - G N G S H D G P S W A R R T V A G . . . . . . 7169 CTCGTTTCAAAACACTTAGAAAATCTGAAATTGGGTACTGAAAATCGACTCTCTGAACTT L V S K H L E N L K L G T E N R L S E L S F Q N T - K I - N W V L K I D S L N F S R F K T L R K S E I G Y - K S T L - T . . . . . . 7109 CGTGACGGAATGGCAGGACGGACCGTCACAGGCGTGACGGACCGTCACAGAGCCTTCAGT R D G M A G R T V T G V T D R H R A F S V T E W Q D G P S Q A - R T V T E P S V S - R N G R T D R H R R D G P S Q S L Q . . . . . . 7049 GAAAACCCATTCTCTGAACCTTACGACGACTTGCAGGACGGACCGTCGTAGGCACGACGG E N P F S E P Y D D L Q D G P S - A R R K T H S L N L T T T C R T D R R R H D G - K P I L - T L R R L A G R T V V G T T . . . . . . 6989 GCCGTCGCAGGCTACGCAATCCCAGGCTGTGTCGGATTTCTGTTAATTTATTTAAGGGGC A V A G Y A I P G C V G F L L I Y L R G P S Q A T Q S Q A V S D F C - F I - G A G R R R L R N P R L C R I S V N L F K G . . . . . . 6929 ATTTTGGACTATTTCCTACTTTAATTATAAAGTGGTGGGTTAATGTTAATAAGTCTAATT I L D Y F L L - L - S G G L M L I S L I F W T I S Y F N Y K V V G - C - - V - L H F G L F P T L I I K W W V N V N K S N . . . . . . 6869 ACTTGGGGGTTAAAAGAGGTAACCTTAAGTTAACTAGTGGGTTATCTTTTATACTTAATT T W G L K E V T L S - L V G Y L L Y L I L G G - K R - P - V N - W V I F Y T - L Y L G V K R G N L K L T S G L S F I L N . . . . . . 6809 ATATGTTAATTAGGGTAAAAGAAAGAGGGTTGGAATAAGAAAAATAAGAAAGAACAAAGA I C - L G - K K E G W N K K N K K E Q R Y V N - G K R K R V G I R K I R K N K E Y M L I R V K E R G L E - E K - E R T K . . . . . . 6749 GAGACAGAAAAAGAAAGAAAACGAGTAGAGAGAGAGAGAAACGAAGGGAATATCAAGGAT E T E K E R K R V E R E R N E G N I K D R Q K K K E N E - R E R E T K G I S R I R D R K R K K T S R E R E K R R E Y Q G . . . . . . 6689 TTTGAGAAGATAGCTTGTTGATCGCAATTCTTCGGTGGAGGTAGGTTATGGTTATTTCAT F E K I A C - S Q F F G G G R L W L F H L R R - L V D R N S S V E V G Y G Y F M F - E D S L L I A I L R W R - V M V I S . . . . . . 6629 GCTATTCGTAGTAAACTCTTAATAGCGAATGATATGTGTTAGTAGTATTGTGAACCTTCT A I R S K L L I A N D M C - - Y C E P S L F V V N S - - R M I C V S S I V N L L C Y S - - T L N S E - Y V L V V L - T F . . . . . . 6569 ATATGCTTAATTGTATGCTTGCATGAATGATGTGATTATGTAATTATGAATAAATAAGCA I C L I V C L H E - C D Y V I M N K - A Y A - L Y A C M N D V I M - L - I N K H Y M L N C M L A - M M - L C N Y E - I S . . . . . . 6509 TGATGAAGCTATTTAATCCCAAATCTTGAAAAGAAACCATAATCTACTTTGTTAATGATG - - S Y L I P N L E K K P - S T L L M M D E A I - S Q I L K R N H N L L C - - - M M K L F N P K S - K E T I I Y F V N D . . . . . . 6449 ATGCCTTGGTATAAAAGAAGGCTTGATGAATGAAAGTAGTGAGATTAGGGGATCGGGTGC M P W Y K R R L D E - K - - D - G I G C C L G I K E G L M N E S S E I R G S G A D A L V - K K A - - M K V V R L G D R V . . . . . . 6389 CACGTTCCGGTACCAGGATAGTATATGAGGATCGGAGTATCACGTTCCGACACCAGGATA H V P V P G - Y M R I G V S R S D T R I T F R Y Q D S I - G S E Y H V P T P G - P R S G T R I V Y E D R S I T F R H Q D . . . . . . 6329 ATATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATATGGATCGGGTGTCACGTT I Y G S G A T F R Y Q D R I W I G C H V Y M D R V P R S G T R I E Y G S G V T F N I W I G C H V P V P G - N M D R V S R . : . . . . . 6269 CCAACAC : GATAATATATGAGGATCGGAGTGTCACGTTCCGACACCAGGATAGTATATTGA P T : R - Y M R I G V S R S D T R I V Y - Q H : D N I - G S E C H V P T P G - Y I E S N T : I I Y E D R S V T F R H Q D S I L . . . . . . 6095 GGAGCGGAGTGTCACGTACCGACACGAGGGGAATAAAGATAATGAATTTTGAAAGATGTT G A E C H V P T R G E - R - - I L K D V E R S V T Y R H E G N K D N E F - K M L R S G V S R T D T R G I K I M N F E R C . . . . . . 6035 AATATGTTCAATCTAATGAACCTAATTCCCAAATGAGTATGATGAGGAGGCGTGAGTCCT N M F N L M N L I P K - V - - G G V S P I C S I - - T - F P N E Y D E E A - V L - Y V Q S N E P N S Q M S M M R R R E S . . . . . . 5975 CATTGATGTGCTTGGTGTTGCAACCAAGGGTTATGGTAACTGTAAATGCTGCATGCTAAG H - C A W C C N Q G L W - L - M L H A K I D V L G V A T K G Y G N C K C C M L R S L M C L V L Q P R V M V T V N A A C - . . . . . . 5915 GATATTAGTTGATTTTATGATATTGCTTAACATATACTGTTTTCTATTTTGAGTTGGCCG D I S - F Y D I A - H I L F S I L S W P I L V D F M I L L N I Y C F L F - V G R G Y - L I L - Y C L T Y T V F Y F E L A . . . . . . 5855 ATGATATCTACTCAGTACCCGTGTTTTGTACTGACCCCTACTTTTATGTTTTCTTCTTTG M I S T Q Y P C F V L T P T F M F S S L - Y L L S T R V L Y - P L L L C F L L C D D I Y S V P V F C T D P Y F Y V F F F . . . . . . 5795 TTATTTGTGGAGTGCAGCAAACGTGCCGTCGTCTTCAACTCAACAGTAATTCAAGCCAGT L F V E C S K R A V V F N S T V I Q A S Y L W S A A N V P S S S T Q Q - F K P V V I C G V Q Q T C R R L Q L N S N S S Q . . . . . . 5735 CTTTACTACACCGGAAATTCAGGGTGAGCTAATGTTTCTAGCTTGGACTGGATCTTTTTC L Y Y T G N S G - A N V S S L D W I F F F T T P E I Q G E L M F L A W T G S F S S L L H R K F R V S - C F - L G L D L F . . . . 5675 TTCAAGTCTTGATGCCTTGAACTTCCGGCAT F K S - C L E L P A S S L D A L N F R H L Q V L M P - T S G Maximal non-overlapping open reading frames (>= 64 codons): >C06HBa0158P14.1-16-_PGL-1_AGS-4_PPS_1 (7032 6772) (frame '0'; 258 bp, 86 residues) 1 TLRRLAGRTV VGTTGRRRLR NPRLCRISVN LFKGHFGLFP TLIIKWWVNV NKSNYLGVKR 61 GNLKLTSGLS FILNYMLIRV KERGLE- AGS-5 (6431 6252,6220 5844) SCR (e 0.753 d 0.000 a 0.000,e 0.761) Exon 1 6431 6252 ( 180 n); score: 0.753 Intron 1 6251 6221 ( 31 n); Pd: 0.000 Pa: 0.000 Exon 2 6220 5844 ( 377 n); score: 0.761 PGS (6431 6252,6220 5844) SGN-E349977+ 3-phase translation of AGS-5 (-strand): . . . . . . 6431 AGGCTTGATGAATGAAAGTAGTGAGATTAGGGGATCGGGTGCCACGTTCCGGTACCAGGA R L D E - K - - D - G I G C H V P V P G G L M N E S S E I R G S G A T F R Y Q D A - - M K V V R L G D R V P R S G T R . . . . . . 6371 TAGTATATGAGGATCGGAGTATCACGTTCCGACACCAGGATAATATATGGATCGGGTGCC - Y M R I G V S R S D T R I I Y G S G A S I - G S E Y H V P T P G - Y M D R V P I V Y E D R S I T F R H Q D N I W I G C . . . . . . : 6311 ACGTTCCGGTACCAGGATAGAATATGGATCGGGTGTCACGTTCCAACACCAGGATAGAAT : T F R Y Q D R I W I G C H V P T P G - N : R S G T R I E Y G S G V T F Q H Q D R I : H V P V P G - N M D R V S R S N T R I E : . . . . . . 6220 TAGAATATGGATCGGGTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGCCACG - N M D R V S R S D T R I E Y G S G A T R I W I G C H V P T P G - N M D R V P R L E Y G S G V T F R H Q D R I W I G C H . . . . . . 6160 TTCCGGTACCAGGATAATATATGAGGATCGGAGTGTCACGTTCCGACACCAGGATAGTAT F R Y Q D N I - G S E C H V P T P G - Y S G T R I I Y E D R S V T F R H Q D S I V P V P G - Y M R I G V S R S D T R I V . . . . . . 6100 ATTGAGGAGCGGAGTGTCACGTACCGACACGAGGGGAATAAAGATAATGAATTTTGAAAG I E E R S V T Y R H E G N K D N E F - K L R S G V S R T D T R G I K I M N F E R Y - G A E C H V P T R G E - R - - I L K . . . . . . 6040 ATGTTAATATGTTCAATCTAATGAACCTAATTCCCAAATGAGTATGATGAGGAGGCGTGA M L I C S I - - T - F P N E Y D E E A - C - Y V Q S N E P N S Q M S M M R R R E D V N M F N L M N L I P K - V - - G G V . . . . . . 5980 GTCCTCATTGATGTGCTTGGTGTTGCAACCAAGGGTTATGGTAACTGTAAATGCTGCATG V L I D V L G V A T K G Y G N C K C C M S S L M C L V L Q P R V M V T V N A A C S P H - C A W C C N Q G L W - L - M L H . . . . . . 5920 CTAAGGATATTAGTTGATTTTATGATATTGCTTAACATATACTGTTTTCTATTTTGAGTT L R I L V D F M I L L N I Y C F L F - V - G Y - L I L - Y C L T Y T V F Y F E L A K D I S - F Y D I A - H I L F S I L S . . 5860 GGCCGATGATATCTACT G R - Y L A D D I Y W P M I S T Maximal non-overlapping open reading frames (>= 64 codons): none AGS-6 (6470 6387,6309 5878) SCR (e 0.964 d 0.000 a 0.000,e 0.919) Exon 1 6470 6387 ( 84 n); score: 0.964 Intron 1 6386 6310 ( 77 n); Pd: 0.000 Pa: 0.000 Exon 2 6309 5878 ( 432 n); score: 0.919 PGS (6470 6387,6309 5878) SGN-E242359+ 3-phase translation of AGS-6 (-strand): . . . . . . 6470 TAATCTACTTTGTTAATGATGATGCCTTGGTATAAAAGAAGGCTTGATGAATGAAAGTAG - S T L L M M M P W Y K R R L D E - K - N L L C - - - C L G I K E G L M N E S S I Y F V N D D A L V - K K A - - M K V . . . : . . . 6410 TGAGATTAGGGGATCGGGTGCCAC : GTTCCGGTACCAGGATAGAATATGGATCGGGTGTCA - D - G I G C H : V P V P G - N M D R V S E I R G S G A T : F R Y Q D R I W I G C H V R L G D R V P : R S G T R I E Y G S G V . . . . . . 6273 CGTTCCAACACCAGGATAGAATATGGATCGGGTGCCACGTTCCGGTACCAGGGTAGAATA R S N T R I E Y G S G A T F R Y Q G R I V P T P G - N M D R V P R S G T R V E Y T F Q H Q D R I W I G C H V P V P G - N . . . . . . 6213 TGGATCGGGTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGCCACGTTCCGGT W I G C H V P T P G - N M D R V P R S G G S G V T F R H Q D R I W I G C H V P V M D R V S R S D T R I E Y G S G A T F R . . . . . . 6153 ACCAGGATAATATATGAGGATCGGAGTGTCACGTTCCGACACCAGGATAGTATATTGAGG T R I I Y E D R S V T F R H Q D S I L R P G - Y M R I G V S R S D T R I V Y - G Y Q D N I - G S E C H V P T P G - Y I E . . . . . . 6093 AGCGGAGTGTCACGTACCGACACGAGGGGAATAAAGATAATGAATTTTGAAAGATGTTAA S G V S R T D T R G I K I M N F E R C - A E C H V P T R G E - R - - I L K D V N E R S V T Y R H E G N K D N E F - K M L . . . . . . 6033 TATGTTCAATCTAATGAACCTAATTCCCAAATGAGTATGATGAGGAGGCGTGAGTCCTCA Y V Q S N E P N S Q M S M M R R R E S S M F N L M N L I P K - V - - G G V S P H I C S I - - T - F P N E Y D E E A - V L . . . . . . 5973 TTGATGTGCTTGGTGTTGCAACCAAGGGTTATGGTAACTGTAAATGCTGCATGCTAAGGA L M C L V L Q P R V M V T V N A A C - G - C A W C C N Q G L W - L - M L H A K D I D V L G V A T K G Y G N C K C C M L R . . . . 5913 TATTAGTTGATTTTATGATATTGCTTAACATATACT Y - L I L - Y C L T Y T I S - F Y D I A - H I I L V D F M I L L N I Y Maximal non-overlapping open reading frames (>= 64 codons): none AGS-7 (6964 6360,6299 6252,6220 6151) SCR (e 0.704 d 0.000 a 0.000,e 0.760 d 0.000 a 0.000,e 0.893) Exon 1 6964 6360 ( 605 n); score: 0.704 Intron 1 6359 6300 ( 60 n); Pd: 0.000 Pa: 0.000 Exon 2 6299 6252 ( 48 n); score: 0.760 Intron 2 6251 6221 ( 31 n); Pd: 0.000 Pa: 0.000 Exon 3 6220 6151 ( 70 n); score: 0.893 PGS (6964 6360,6299 6252,6220 6151) SGN-E546548+ 3-phase translation of AGS-7 (-strand): . . . . . . 6964 GCTGTGTCGGATTTCTGTTAATTTATTTAAGGGGCATTTTGGACTATTTCCTACTTTAAT A V S D F C - F I - G A F W T I S Y F N L C R I S V N L F K G H F G L F P T L I C V G F L L I Y L R G I L D Y F L L - . . . . . . 6904 TATAAAGTGGTGGGTTAATGTTAATAAGTCTAATTACTTGGGGGTTAAAAGAGGTAACCT Y K V V G - C - - V - L L G G - K R - P I K W W V N V N K S N Y L G V K R G N L L - S G G L M L I S L I T W G L K E V T . . . . . . 6844 TAAGTTAACTAGTGGGTTATCTTTTATACTTAATTATATGTTAATTAGGGTAAAAGAAAG - V N - W V I F Y T - L Y V N - G K R K K L T S G L S F I L N Y M L I R V K E R L S - L V G Y L L Y L I I C - L G - K K . . . . . . 6784 AGGGTTGGAATAAGAAAAATAAGAAAGAACAAAGAGAGACAGAAAAAGAAAGAAAACGAG R V G I R K I R K N K E R Q K K K E N E G L E - E K - E R T K R D R K R K K T S E G W N K K N K K E Q R E T E K E R K R . . . . . . 6724 TAGAGAGAGAGAGAAACGAAGGGAATATCAAGGATTTTGAGAAGATAGCTTGTTGATCGC - R E R E T K G I S R I L R R - L V D R R E R E K R R E Y Q G F - E D S L L I A V E R E R N E G N I K D F E K I A C - S . . . . . . 6664 AATTCTTCGGTGGAGGTAGGTTATGGTTATTTCATGCTATTCGTAGTAAACTCTTAATAG N S S V E V G Y G Y F M L F V V N S - - I L R W R - V M V I S C Y S - - T L N S Q F F G G G R L W L F H A I R S K L L I . . . . . . 6604 CGAATGATATGTGTTAGTAGTATTGTGAACCTTCTATATGCTTAATTGTATGCTTGCATG R M I C V S S I V N L L Y A - L Y A C M E - Y V L V V L - T F Y M L N C M L A - A N D M C - - Y C E P S I C L I V C L H . . . . . . 6544 AATGATGTGATTATGTAATTATGAATAAATAAGCATGATGAAGCTATTTAATCCCAAATC N D V I M - L - I N K H D E A I - S Q I M M - L C N Y E - I S M M K L F N P K S E - C D Y V I M N K - A - - S Y L I P N . . . . . . 6484 TTGAAAAGAAACCATAATCTACTTTGTTAATGATGATGCCTTGGTATAAAAGAAGGCTTG L K R N H N L L C - - - C L G I K E G L - K E T I I Y F V N D D A L V - K K A - L E K K P - S T L L M M M P W Y K R R L . . . . . . 6424 ATGAATGAAAGTAGTGAGATTAGGGGATCGGGTGCCACGTTCCGGTACCAGGATAGTATA M N E S S E I R G S G A T F R Y Q D S I - M K V V R L G D R V P R S G T R I V Y D E - K - - D - G I G C H V P V P G - Y . : . . . . . : 6364 TGAGG : CAGGATAGAATATGGATCGGGTGTCACGTTCCAACACCAGGATAGAAT : TAGAATA - G : R I E Y G S G V T F Q H Q D R I : R I E : A G - N M D R V S R S N T R I E : L E Y M R : Q D R I W I G C H V P T P G - N : - N . . . . . . 6213 TGGATCGGGTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGCCACGTTCCGGT W I G C H V P T P G - N M D R V P R S G G S G V T F R H Q D R I W I G C H V P V M D R V S R S D T R I E Y G S G A T F R . 6153 ACC T Y Maximal non-overlapping open reading frames (>= 64 codons): none AGS-8 (8518 8379) SCR (e 0.916) Exon 1 8518 8379 ( 140 n); score: 0.916 PGS (8507 8379) SGN-E379333- PGS (8507 8379) SGN-E200682- PGS (8518 8388) SGN-E379427- PGS (8514 8403) SGN-E578389- PGS (8518 8415) SGN-E378080- 3-phase translation of AGS-8 (-strand): . . . . . . 8518 AGTATTTAAATTTGGGCAACTTTCACATATAGCAAATAAAAAATTCATATTTGTATGCTA S I - I W A T F T Y S K - K I H I C M L V F K F G Q L S H I A N K K F I F V C Y Y L N L G N F H I - Q I K N S Y L Y A . . . . . . 8458 TAGCAAAGTTTGCATAATTGCGCTCAATAGCAAACATTGAAACTGTATAATTCGCTATAC - Q S L H N C A Q - Q T L K L Y N S L Y S K V C I I A L N S K H - N C I I R Y T I A K F A - L R S I A N I E T V - F A I . . 8398 ATATACATTTGAAGCAAATT I Y I - S K Y T F E A N H I H L K Q I Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-8 (+strand): . . . . . . 8379 AATTTGCTTCAAATGTATATGTATAGCGAATTATACAGTTTCAATGTTTGCTATTGAGCG N L L Q M Y M Y S E L Y S F N V C Y - A I C F K C I C I A N Y T V S M F A I E R F A S N V Y V - R I I Q F Q C L L L S . . . . . . 8439 CAATTATGCAAACTTTGCTATAGCATACAAATATGAATTTTTTATTTGCTATATGTGAAA Q L C K L C Y S I Q I - I F Y L L Y V K N Y A N F A I A Y K Y E F F I C Y M - K A I M Q T L L - H T N M N F L F A I C E . . 8499 GTTGCCCAAATTTAAATACT V A Q I - I L P K F K Y S C P N L N T Maximal non-overlapping open reading frames (>= 64 codons): none ... finished at: Mon Aug 28 22:14:01 2006 ________________________________________________________________________________ Sequence 17: C06HBa0158P14.1-17, from 1 to 10379, both strands analyzed. ... started at: Mon Aug 28 22:14:01 2006 EST library file: /tmp/cxgn-bacpublish-resources-E8LUak/sgn_ests; matching gDNA +strand ... ... found all matches, elapsed seconds = 3 ... matches indexed, elapsed seconds = 3 HitsTableSize = 3 EST library file: /tmp/cxgn-bacpublish-resources-E8LUak/sgn_ests; matching gDNA -strand ... ... found all matches, elapsed seconds = 4 ... matches indexed, elapsed seconds = 4 HitsTableSize = 28 ******************************************************************************** EST sequence 27 +strand 384 n (File: SGN-E230552+) 1 TTTTTTTATC TTTTGGGAAA ATTACGCGGC TAAGCAAATT TATACTATTT AATTACTCAT 61 CATAGCTATA GTTTGCTATA ATTAGAACTC ATGACTAACA TTATACATTA ATTACGTGGG 121 CTGACTTCGA ATTTGTATTA TTAGTCACTT TCGCCAGGAT ATACAAATAC ACATGTATAA 181 TATACAATTA TTTAACCTAT ATACATATAC AATTCACCTC TCTCCCACTC TCTGCCCTCT 241 CTCGCTCGCC TCTCTCCTCC CTCTCTCAAT TTCACTCGCT TCTCTCCTCC TTCTCCCAAT 301 CTCGCTCGCC ATACATACAA ATGCATATGT ATAATACACA ATTATATACA TATACAATTC 361 ACCTTTCTCC CACTCTTTGC CCCC Predicted gene structure (within gDNA segment 5131 to 1489): Exon 1 3734 3460 ( 275 n); cDNA 5 265 ( 261 n); score: 0.818 MATCH C06HBa0158P14.1-17- SGN-E230552+ 0.818 275 0.716 C PGS_C06HBa0158P14.1-17-_SGN-E230552+ (3734 3460) Alignment (genomic DNA sequence = upper lines): TTTATAAATT TGAAAAAATT ACG-TGATAA ATAAACTTAT ATTATTTAAT TACTCATCAT 3676 ||||| || || |||||| ||| | ||| ||| |||| | |||||||| |||||||||| TTTAT-CTTT TGGGAAAATT ACGCGGCTAA GCAAATTTAT ACTATTTAAT TACTCATCAT 63 AACTATAATT TGCTATAATT ACCA-TCATG ACTAACATTA TACATTAATT ACGTGGGCTG 3617 | ||||| || |||||||||| | | ||||| |||||||||| |||||||||| |||||||||| AGCTATAGTT TGCTATAATT AGAACTCATG ACTAACATTA TACATTAATT ACGTGGGCTG 123 ACTTCGAGTT TATATAATTA GTTATGTTTG TATATATATA ATTCGTCAGG ATATACAAAA 3557 ||||||| | | | | |||| ||| | | | | | | || |||| ||||||||| ACTTCGA-AT T-TGT-ATTA -TTA-G--T- CA-CT-T-T- ---CGCCAGG ATATACAAAT 168 ACATATATAT AATGTACAAT TATTTAACCT ATATACAAAG ACAGTTCACC TCTCTCCCAC 3497 ||| || ||| ||| |||||| |||||||||| ||||||| | ||| |||||| |||||||||| ACACATGTAT AATATACAAT TATTTAACCT ATATACATAT ACAATTCACC TCTCTCCCAC 228 TCTCTGCCCT CTCTCGCTAT CCTCTATCCT CCCTCTC 3460 |||||||||| |||||||| ||||| |||| ||||||| TCTCTGCCCT CTCTCGCTCG CCTCTCTCCT CCCTCTC 265 hqPGS_C06HBa0158P14.1-17-_SGN-E230552+ (3734 3460) ******************************************************************************** EST sequence 11 +strand 691 n (File: SGN-E340963+) 1 GGGGTGATAG ATCTCCGTTT AATCCGGTTA TTGTTCTTCG TAGTCCATCT GAAGCACCTG 61 GGGAGGATGA AGCTGCTGCA GCTGCAGAGG AGCGGAGTTA TGAGCTTTAT TATGATGATG 121 GTGAAGGTTC AGGTCTCAGG CCGTTGCCGC CGACGATGTC GGAGTTTTTG ATGGGATCTG 181 GGTTTGATCG GTTACTTGAT CAGTTAGCAC AGATCGAGGT GAACGGTTTT GGTCGCCCGG 241 AAAATCCACC GGCGTCGAAA TCAGCGATTG AGTCGATGCC GATTATTCAA ATAGCTTCAA 301 ATCACGTAAA TTCCGAGACC CATTGCGCTG TTTGTAAAGA AGCTTTCGAT TTAGGATCTG 361 AAGCTCGAGA AATGGACGGT GGATTTAACA ATGGGGTACC TAGAAGAATA GCTTGGAGAT 421 CAAGAAGAAG CAACACAGGT CGAAATGGCA ACGGAATAAG CCGAATTTTC AACAACTTCA 481 CATCATTTTT CCGGCGATTA ACACCATCTT CTCAACATCG ATCTCTATCC ATACATTCCA 541 GTAGTTCAGA ATCATCCGGT TCTGGTTCTG GATCTGCTGT ATTCAGGAGT CGAAGTGTAT 601 CTTCAAGCAC TTCAATATTC AGTAGGTATT TGAGAAGAAG CAGAAGAAAT TGGGTACCTG 661 AAGAACGTAA TGGAGTAACA AGATGGTAAT T Predicted gene structure (within gDNA segment 8940 to 6782): Exon 1 8340 7972 ( 369 n); cDNA 1 369 ( 369 n); score: 1.000 Intron 1 7971 7714 ( 258 n); Pd: 0.000 (s: 1.00), Pa: 0.000 (s: 1.00) Exon 2 7713 7392 ( 322 n); cDNA 370 691 ( 322 n); score: 1.000 MATCH C06HBa0158P14.1-17- SGN-E340963+ 1.000 691 1.000 C PGS_C06HBa0158P14.1-17-_SGN-E340963+ (8340 7972,7713 7392) Alignment (genomic DNA sequence = upper lines): GGGGTGATAG ATCTCCGTTT AATCCGGTTA TTGTTCTTCG TAGTCCATCT GAAGCACCTG 8281 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGGGTGATAG ATCTCCGTTT AATCCGGTTA TTGTTCTTCG TAGTCCATCT GAAGCACCTG 60 GGGAGGATGA AGCTGCTGCA GCTGCAGAGG AGCGGAGTTA TGAGCTTTAT TATGATGATG 8221 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGGAGGATGA AGCTGCTGCA GCTGCAGAGG AGCGGAGTTA TGAGCTTTAT TATGATGATG 120 GTGAAGGTTC AGGTCTCAGG CCGTTGCCGC CGACGATGTC GGAGTTTTTG ATGGGATCTG 8161 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGAAGGTTC AGGTCTCAGG CCGTTGCCGC CGACGATGTC GGAGTTTTTG ATGGGATCTG 180 GGTTTGATCG GTTACTTGAT CAGTTAGCAC AGATCGAGGT GAACGGTTTT GGTCGCCCGG 8101 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGTTTGATCG GTTACTTGAT CAGTTAGCAC AGATCGAGGT GAACGGTTTT GGTCGCCCGG 240 AAAATCCACC GGCGTCGAAA TCAGCGATTG AGTCGATGCC GATTATTCAA ATAGCTTCAA 8041 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAATCCACC GGCGTCGAAA TCAGCGATTG AGTCGATGCC GATTATTCAA ATAGCTTCAA 300 ATCACGTAAA TTCCGAGACC CATTGCGCTG TTTGTAAAGA AGCTTTCGAT TTAGGATCTG 7981 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCACGTAAA TTCCGAGACC CATTGCGCTG TTTGTAAAGA AGCTTTCGAT TTAGGATCTG 360 AAGCTCGAGA AATGCCCTGT AAACACATCT ACCATTCCGA TTGTATCCTC CCATGGCTAT 7921 ||||||||| AAGCTCGAG. .......... .......... .......... .......... .......... 369 CTCTTCGAAA TTCGTGCCCC GTTTGCCGAC ACGAATTACC AACGGAATCA ACTGAAACTA 7861 .......... .......... .......... .......... .......... .......... 369 CAAACTCCGA CAACATTTCT AGACCCAGAA ACGAAGACGA GGCAATGGGA TTGACAATAT 7801 .......... .......... .......... .......... .......... .......... 369 GGAGACTTCC GGGAGGTGGG TTCGCCGTAG GAAGATTTTC CGGTGGAAGA AGAGGAGCTG 7741 .......... .......... .......... .......... .......... .......... 369 AGAGAGAGCT TCCAGTAGTG TATACAGAAA TGGACGGTGG ATTTAACAAT GGGGTACCTA 7681 ||| |||||||||| |||||||||| |||||||||| .......... .......... .......AAA TGGACGGTGG ATTTAACAAT GGGGTACCTA 402 GAAGAATAGC TTGGAGATCA AGAAGAAGCA ACACAGGTCG AAATGGCAAC GGAATAAGCC 7621 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAGAATAGC TTGGAGATCA AGAAGAAGCA ACACAGGTCG AAATGGCAAC GGAATAAGCC 462 GAATTTTCAA CAACTTCACA TCATTTTTCC GGCGATTAAC ACCATCTTCT CAACATCGAT 7561 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAATTTTCAA CAACTTCACA TCATTTTTCC GGCGATTAAC ACCATCTTCT CAACATCGAT 522 CTCTATCCAT ACATTCCAGT AGTTCAGAAT CATCCGGTTC TGGTTCTGGA TCTGCTGTAT 7501 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCTATCCAT ACATTCCAGT AGTTCAGAAT CATCCGGTTC TGGTTCTGGA TCTGCTGTAT 582 TCAGGAGTCG AAGTGTATCT TCAAGCACTT CAATATTCAG TAGGTATTTG AGAAGAAGCA 7441 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCAGGAGTCG AAGTGTATCT TCAAGCACTT CAATATTCAG TAGGTATTTG AGAAGAAGCA 642 GAAGAAATTG GGTACCTGAA GAACGTAATG GAGTAACAAG ATGGTAATT 7392 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| GAAGAAATTG GGTACCTGAA GAACGTAATG GAGTAACAAG ATGGTAATT 691 hqPGS_C06HBa0158P14.1-17-_SGN-E340963+ (8340 7972,7713 7392) ******************************************************************************** EST sequence 3 -strand 413 n (File: SGN-E204810-) 1 CCCCGATGCC AAGTGTAAGG CAATGTGTGA TTGGTAAAGC AGTCGCCTAA AAAAAAAAGC 61 CAAAAAAGTC GTTCTTTAAA TTATTACCTG GTGAGGGGGA AGGGAGCCCT AAAAAAAAAG 121 AAAGTTCGGT TCTAGAGCAG TCGACTAAAA GTAGAAGATT GATGGCTAAA AGAGCGGCCT 181 ATATGGCATA GAGAAAAGAT GCCCTTTTGT TGGGAAAATG TAAAAAAAAA AGGCTTTGAT 241 ATGAAATTCA AAACATTTTT AGGGGCATTT TGGTGAATTT GGAGCCGGAA TTATAAGTAA 301 TAGAAAGCCC CTTGTTTTTT TTTATAGCAA TTGAAAGAAA ACTTAAGCTG GGGAAAAAAA 361 AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA AAAAAAACTC GAGACTAGTT CTC Predicted gene structure (within gDNA segment 7929 to 5740): Exon 1 7319 6971 ( 349 n); cDNA 1 349 ( 349 n); score: 0.920 PPA cDNA 363 398 MATCH C06HBa0158P14.1-17- SGN-E204810- 0.920 349 0.845 C PGS_C06HBa0158P14.1-17-_SGN-E204810- (7319 6971) Alignment (genomic DNA sequence = upper lines): CCCCGATGCC AAGTGTAAGG CAATGTGTGA TTGGTAGAGC AGTCGACTAG AAGAAGAAGA 7260 |||||||||| |||||||||| |||||||||| |||||| ||| ||||| ||| || || ||| CCCCGATGCC AAGTGTAAGG CAATGTGTGA TTGGTAAAGC AGTCGCCTAA AAAAAAAAGC 60 CAATAATGTC GTTCTTTAAA TTATTACCTG TTGAGTGGGA AGGGAGCACT AAAAAAAGAG 7200 ||| || ||| |||||||||| |||||||||| |||| |||| ||||||| || ||||||| || CAAAAAAGTC GTTCTTTAAA TTATTACCTG GTGAGGGGGA AGGGAGCCCT AAAAAAAAAG 120 AAAGTTCGGT TCTAGAGCAG TCGACTAGAA GTAGAAGATT GATGGCTAAG AGAGCGGCCT 7140 |||||||||| |||||||||| ||||||| || |||||||||| ||||||||| |||||||||| AAAGTTCGGT TCTAGAGCAG TCGACTAAAA GTAGAAGATT GATGGCTAAA AGAGCGGCCT 180 ATATGGCATA GAGAAAAGAT GCCATTTTGT TGGGAATATG TAAATAGAGA AGGCTTTGAT 7080 |||||||||| |||||||||| ||| |||||| |||||| ||| |||| | | | |||||||||| ATATGGCATA GAGAAAAGAT GCCCTTTTGT TGGGAAAATG TAAAAAAAAA AGGCTTTGAT 240 ATGAAATTCA ATACATTTTT AGTGTCATTT TGTTGAATTT GTAGCAGTAA TTATAAGTAA 7020 |||||||||| | |||||||| || | ||||| || ||||||| | ||| | || |||||||||| ATGAAATTCA AAACATTTTT AGGGGCATTT TGGTGAATTT GGAGCCGGAA TTATAAGTAA 300 TAGAAAGACC ATTGTTTTTT TTTATAGCAA TTGAAAGAAA ACTTAAGCT 6971 ||||||| || ||||||||| |||||||||| |||||||||| ||||||||| TAGAAAGCCC CTTGTTTTTT TTTATAGCAA TTGAAAGAAA ACTTAAGCT 349 hqPGS_C06HBa0158P14.1-17-_SGN-E204810- (7319 6971) ******************************************************************************** EST sequence 26 +strand 558 n (File: SGN-E377359+) 1 AGGAGTCGAA GTGTATCTTC AAGCACTTCA ATATTCAGTA GGTATTTGAG AAGAAGCAGA 61 AGAAATTGGG TACCTGAAGA ACGTAATGGA GTAACAAGAT GGTAATTACT TAGTCGGAAA 121 ACGCCAATTT TCAATTATTA TTTTTATAGA GCAGTCGACT AGAAGCAGAA GACGATAACC 181 CCCGATGCCA AGTGTAAGGC AATGTGTGAT TGGTAGAGCA GTCGACTAGA AGAAGAAGAC 241 AATAATGTCG TTCTTTAAAT TATTACCTGT TGAGTGGGAA GGGAGCACTA AAAAAAGAGA 301 AAGTTCGGTT CTAGAGCAGT CGACTAGAAG TAGAAGATTG ATGGCTAAGA GAGCGGCCTA 361 TATGGCATAG AGAAAAGATG CCATTTTGTT GGGAATATGT AAATAGAGAA GGCTTTGATA 421 TGAAATTCAA TACATTTTTA GTGTCATTTT GTTGAATTTG TAGCAGTAAT TATAAGTAAT 481 AGAAAGACCA TTGTTTTTTT TTATAAAAAA AAAAAAAAAA AAAAAAAAGA GGGAAAAAAA 541 TACCTCGAGG GGGGGCCC Predicted gene structure (within gDNA segment 8098 to 5854): Exon 1 7498 6994 ( 505 n); cDNA 1 505 ( 505 n); score: 1.000 PPA cDNA 508 530 MATCH C06HBa0158P14.1-17- SGN-E377359+ 1.000 505 0.905 C PGS_C06HBa0158P14.1-17-_SGN-E377359+ (7498 6994) Alignment (genomic DNA sequence = upper lines): AGGAGTCGAA GTGTATCTTC AAGCACTTCA ATATTCAGTA GGTATTTGAG AAGAAGCAGA 7439 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGAGTCGAA GTGTATCTTC AAGCACTTCA ATATTCAGTA GGTATTTGAG AAGAAGCAGA 60 AGAAATTGGG TACCTGAAGA ACGTAATGGA GTAACAAGAT GGTAATTACT TAGTCGGAAA 7379 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAAATTGGG TACCTGAAGA ACGTAATGGA GTAACAAGAT GGTAATTACT TAGTCGGAAA 120 ACGCCAATTT TCAATTATTA TTTTTATAGA GCAGTCGACT AGAAGCAGAA GACGATAACC 7319 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACGCCAATTT TCAATTATTA TTTTTATAGA GCAGTCGACT AGAAGCAGAA GACGATAACC 180 CCCGATGCCA AGTGTAAGGC AATGTGTGAT TGGTAGAGCA GTCGACTAGA AGAAGAAGAC 7259 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCCGATGCCA AGTGTAAGGC AATGTGTGAT TGGTAGAGCA GTCGACTAGA AGAAGAAGAC 240 AATAATGTCG TTCTTTAAAT TATTACCTGT TGAGTGGGAA GGGAGCACTA AAAAAAGAGA 7199 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATAATGTCG TTCTTTAAAT TATTACCTGT TGAGTGGGAA GGGAGCACTA AAAAAAGAGA 300 AAGTTCGGTT CTAGAGCAGT CGACTAGAAG TAGAAGATTG ATGGCTAAGA GAGCGGCCTA 7139 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGTTCGGTT CTAGAGCAGT CGACTAGAAG TAGAAGATTG ATGGCTAAGA GAGCGGCCTA 360 TATGGCATAG AGAAAAGATG CCATTTTGTT GGGAATATGT AAATAGAGAA GGCTTTGATA 7079 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATGGCATAG AGAAAAGATG CCATTTTGTT GGGAATATGT AAATAGAGAA GGCTTTGATA 420 TGAAATTCAA TACATTTTTA GTGTCATTTT GTTGAATTTG TAGCAGTAAT TATAAGTAAT 7019 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAAATTCAA TACATTTTTA GTGTCATTTT GTTGAATTTG TAGCAGTAAT TATAAGTAAT 480 AGAAAGACCA TTGTTTTTTT TTATA 6994 |||||||||| |||||||||| ||||| AGAAAGACCA TTGTTTTTTT TTATA 505 hqPGS_C06HBa0158P14.1-17-_SGN-E377359+ (7498 6994) ******************************************************************************** EST sequence 23 +strand 502 n (File: SGN-E236510+) 1 AGGAGTCGAA GTGTATCTTC AAGCACTTCA ATATTCAGTA GGTATTTGAG AAGAAGCAGA 61 AGAAATTGGG TACCTGAAGA ACGTAATGGA GTAACAAGAT GGTAATTACT TAGTCGGAAA 121 ACGCCAATTT TCAATTATTA TTTTTATAGA GCAGTCGACT AGAAGCAGAA GACGATAACC 181 CCCGATGCCA AGTGTAAGGC AATGTGTGAT TGGTAGAGCA GTCGACTAGA AGAAGAAGAC 241 AATAATGTCG TTCTTTAAAT TATTACCTGT TGAGTGGGAA GGGAGCACTA AAAAAAGAGA 301 AAGTTCGGTT CTAGAAGCAG CGACTAGAAG TAGAAGATTG ATGGCTAAGA GAGCGGCCTA 361 TATGGCATAG AGAAAAGATG CCATTTTGTT GGGAATATGT AAATAGAGAA GGCTTTGATA 421 TGAAATTCAA TACATTTTTA GTGTCATTTT GTTGAATTTG TAGCAGTAAT TATAAGTAAT 481 AGAAAGACCA TTGTTTTTTT TT Predicted gene structure (within gDNA segment 8098 to 6387): Exon 1 7498 6997 ( 502 n); cDNA 1 502 ( 502 n); score: 0.993 MATCH C06HBa0158P14.1-17- SGN-E236510+ 0.993 502 1.000 C PGS_C06HBa0158P14.1-17-_SGN-E236510+ (7498 6997) Alignment (genomic DNA sequence = upper lines): AGGAGTCGAA GTGTATCTTC AAGCACTTCA ATATTCAGTA GGTATTTGAG AAGAAGCAGA 7439 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGAGTCGAA GTGTATCTTC AAGCACTTCA ATATTCAGTA GGTATTTGAG AAGAAGCAGA 60 AGAAATTGGG TACCTGAAGA ACGTAATGGA GTAACAAGAT GGTAATTACT TAGTCGGAAA 7379 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAAATTGGG TACCTGAAGA ACGTAATGGA GTAACAAGAT GGTAATTACT TAGTCGGAAA 120 ACGCCAATTT TCAATTATTA TTTTTATAGA GCAGTCGACT AGAAGCAGAA GACGATAACC 7319 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACGCCAATTT TCAATTATTA TTTTTATAGA GCAGTCGACT AGAAGCAGAA GACGATAACC 180 CCCGATGCCA AGTGTAAGGC AATGTGTGAT TGGTAGAGCA GTCGACTAGA AGAAGAAGAC 7259 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCCGATGCCA AGTGTAAGGC AATGTGTGAT TGGTAGAGCA GTCGACTAGA AGAAGAAGAC 240 AATAATGTCG TTCTTTAAAT TATTACCTGT TGAGTGGGAA GGGAGCACTA AAAAAAGAGA 7199 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATAATGTCG TTCTTTAAAT TATTACCTGT TGAGTGGGAA GGGAGCACTA AAAAAAGAGA 300 AAGTTCGGTT CTAG-AGCAG TCGACTAGAA GTAGAAGATT GATGGCTAAG AGAGCGGCCT 7140 |||||||||| |||| ||||| ||||||||| |||||||||| |||||||||| |||||||||| AAGTTCGGTT CTAGAAGCAG -CGACTAGAA GTAGAAGATT GATGGCTAAG AGAGCGGCCT 359 ATATGGCATA GAGAAAAGAT GCCATTTTGT TGGGAATATG TAAATAGAGA AGGCTTTGAT 7080 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATATGGCATA GAGAAAAGAT GCCATTTTGT TGGGAATATG TAAATAGAGA AGGCTTTGAT 419 ATGAAATTCA ATACATTTTT AGTGTCATTT TGTTGAATTT GTAGCAGTAA TTATAAGTAA 7020 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGAAATTCA ATACATTTTT AGTGTCATTT TGTTGAATTT GTAGCAGTAA TTATAAGTAA 479 TAGAAAGACC ATTGTTTTTT TTT 6997 |||||||||| |||||||||| ||| TAGAAAGACC ATTGTTTTTT TTT 502 hqPGS_C06HBa0158P14.1-17-_SGN-E236510+ (7498 6997) ******************************************************************************** EST sequence 1 -strand 643 n (File: SGN-E379209-) 1 AGATCAAGAA GAAGCAACAC AGGTCGAAAT GGCAACGGAA TAAGCCGAAT TTTCAACAAC 61 TTCACATCAT TTTTCCGGCG ATTAACACCA TCTTCTCAAC ATCGATCTCT ATCCATACAT 121 TCCAGTAGTT CAGAATCATC CGGTTCTGGT TCTGGATCTG CTGTATTCAG GAGTCGAAGT 181 GTATCTTCAA GCACTTCAAT ATTCAGTAGG TATTTGAGAA GAAGCAGAAG AAATTGGGTA 241 CCTGAAGAAC GTAATGGAGT AACAAGATGG TAATTACTTA GTCGGAAAAC GCCAATTTTC 301 AATTATTATT TTTATAGAGC AGTCGACTAG AAGCAGAAGA CGATAACCCC CGATGCCAAG 361 TGTAAGGCAA TGTGTGATTG GTAGAGCAGT CGACTAGAAG AAGAAGACAA TAATGTCGTT 421 CTTTAAATTA TTACCTGTTG AGTGGGAAGG GAGCACTAAA AAAAGAGAAA GTTCGGTTCT 481 AGAGCAGTCG ACTAGAAGTA GAAGATTGAT GGCTAAGAGA GCGGCCTATA TGGCATAGAG 541 AAAAGATGCC ATTTTGTTGG GAATATGTAA ATAGAGAAGG CTTTGATATG AAATTCAATA 601 CATTTTTAGT GTCATTTTGT TGAATGAGTA GCAGTAATTA TAA Predicted gene structure (within gDNA segment 8276 to 6424): Exon 1 7666 7024 ( 643 n); cDNA 1 643 ( 643 n); score: 0.997 MATCH C06HBa0158P14.1-17- SGN-E379209- 0.997 643 1.000 C PGS_C06HBa0158P14.1-17-_SGN-E379209- (7666 7024) Alignment (genomic DNA sequence = upper lines): AGATCAAGAA GAAGCAACAC AGGTCGAAAT GGCAACGGAA TAAGCCGAAT TTTCAACAAC 7607 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGATCAAGAA GAAGCAACAC AGGTCGAAAT GGCAACGGAA TAAGCCGAAT TTTCAACAAC 60 TTCACATCAT TTTTCCGGCG ATTAACACCA TCTTCTCAAC ATCGATCTCT ATCCATACAT 7547 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCACATCAT TTTTCCGGCG ATTAACACCA TCTTCTCAAC ATCGATCTCT ATCCATACAT 120 TCCAGTAGTT CAGAATCATC CGGTTCTGGT TCTGGATCTG CTGTATTCAG GAGTCGAAGT 7487 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCCAGTAGTT CAGAATCATC CGGTTCTGGT TCTGGATCTG CTGTATTCAG GAGTCGAAGT 180 GTATCTTCAA GCACTTCAAT ATTCAGTAGG TATTTGAGAA GAAGCAGAAG AAATTGGGTA 7427 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTATCTTCAA GCACTTCAAT ATTCAGTAGG TATTTGAGAA GAAGCAGAAG AAATTGGGTA 240 CCTGAAGAAC GTAATGGAGT AACAAGATGG TAATTACTTA GTCGGAAAAC GCCAATTTTC 7367 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCTGAAGAAC GTAATGGAGT AACAAGATGG TAATTACTTA GTCGGAAAAC GCCAATTTTC 300 AATTATTATT TTTATAGAGC AGTCGACTAG AAGCAGAAGA CGATAACCCC CGATGCCAAG 7307 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATTATTATT TTTATAGAGC AGTCGACTAG AAGCAGAAGA CGATAACCCC CGATGCCAAG 360 TGTAAGGCAA TGTGTGATTG GTAGAGCAGT CGACTAGAAG AAGAAGACAA TAATGTCGTT 7247 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTAAGGCAA TGTGTGATTG GTAGAGCAGT CGACTAGAAG AAGAAGACAA TAATGTCGTT 420 CTTTAAATTA TTACCTGTTG AGTGGGAAGG GAGCACTAAA AAAAGAGAAA GTTCGGTTCT 7187 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTTAAATTA TTACCTGTTG AGTGGGAAGG GAGCACTAAA AAAAGAGAAA GTTCGGTTCT 480 AGAGCAGTCG ACTAGAAGTA GAAGATTGAT GGCTAAGAGA GCGGCCTATA TGGCATAGAG 7127 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAGCAGTCG ACTAGAAGTA GAAGATTGAT GGCTAAGAGA GCGGCCTATA TGGCATAGAG 540 AAAAGATGCC ATTTTGTTGG GAATATGTAA ATAGAGAAGG CTTTGATATG AAATTCAATA 7067 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAAGATGCC ATTTTGTTGG GAATATGTAA ATAGAGAAGG CTTTGATATG AAATTCAATA 600 CATTTTTAGT GTCATTTTGT TGAATTTGTA GCAGTAATTA TAA 7024 |||||||||| |||||||||| ||||| ||| |||||||||| ||| CATTTTTAGT GTCATTTTGT TGAATGAGTA GCAGTAATTA TAA 643 hqPGS_C06HBa0158P14.1-17-_SGN-E379209- (7666 7024) ******************************************************************************** EST sequence 2 -strand 224 n (File: SGN-E389452-) 1 AAGAAGAAGA CAATAATGTC GTTTTTTAAA TTATTACCTG TTGAGTGGGA AGGGAGCACT 61 AAAAAAAGAG AAAGTTCGGT TCTAGAGCAG TCGACTAGAA GTAGAAGATT GATGGCTAAG 121 AGAGCGGCCT ATATGGCATA GAGAAAATTT TATCATTTTG TTGGCGATAA ATAAATAGAG 181 AAGGCTTTGA TATGAAATTC AATACATTTT TAGTGTCATT TTGT Predicted gene structure (within gDNA segment 7895 to 6447): Exon 1 7269 7047 ( 223 n); cDNA 1 224 ( 224 n); score: 0.948 MATCH C06HBa0158P14.1-17- SGN-E389452- 0.948 223 0.996 C PGS_C06HBa0158P14.1-17-_SGN-E389452- (7269 7047) Alignment (genomic DNA sequence = upper lines): AAGAAGAAGA CAATAATGTC GTTCTTTAAA TTATTACCTG TTGAGTGGGA AGGGAGCACT 7210 |||||||||| |||||||||| ||| |||||| |||||||||| |||||||||| |||||||||| AAGAAGAAGA CAATAATGTC GTTTTTTAAA TTATTACCTG TTGAGTGGGA AGGGAGCACT 60 AAAAAAAGAG AAAGTTCGGT TCTAGAGCAG TCGACTAGAA GTAGAAGATT GATGGCTAAG 7150 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAAAAAGAG AAAGTTCGGT TCTAGAGCAG TCGACTAGAA GTAGAAGATT GATGGCTAAG 120 AGAGCGGCCT ATATGGCATA GAGAAAA-GA TGCCATTTTG TTGGGAATAT GTAAATAGAG 7091 |||||||||| |||||||||| ||||||| | ||||||| |||| ||| ||||||||| AGAGCGGCCT ATATGGCATA GAGAAAATTT TATCATTTTG TTGGCGATAA ATAAATAGAG 180 AAGGCTTTGA TATGAAATTC AATACATTTT TAGTGTCATT TTGT 7047 |||||||||| |||||||||| |||||||||| |||||||||| |||| AAGGCTTTGA TATGAAATTC AATACATTTT TAGTGTCATT TTGT 224 hqPGS_C06HBa0158P14.1-17-_SGN-E389452- (7269 7047) ******************************************************************************** EST sequence 8 +strand 627 n (File: SGN-E303411+) 1 AAGACGAGGC AATGGGATTG ACAATATGGA GACTTCCGGG AGGTGGGTTC GCCGTAGGAA 61 GATTTTCCGG TGGAAGAAGA GGAGCTGAGA GAGAGCTTCC AGTAGTGTAT ACAGAAATGG 121 ACGGTGGATT TAACAATGGG GTACCTAGAA GAATAGCTTG GAGATCAAGA AGAAGCAACA 181 CAGGTCGAAA TGGCAACGGA ATAAGCCGAA TTTTCAACAA CTTCACATCA TTTTTCCGGC 241 GATTAACACC ATCTTCTCAA CATCGATCTC TATCCATACA TTCCAGTAGT TCAGAATCAT 301 CCGGTTCTGG TTCTGGATCT GCTGTATTCA GGAGTCGAAG TGTATCTTCA AGCACTTCAA 361 TATTCAGTAG GTATTTGAGA AGAAGCAGAA GAAATTGGGT ACCTGAAGAA CGTAATGGAG 421 TAACAAGATG GTAATTACTT AGTCGGAAAA CGCCAATTTT CAATTATTAT TTTTATAGAG 481 CAGTCGACTA GAAGCAGAAG ACGATAACCC CCGATGCCAA GTGTAAGGCA ATGTGTGATT 541 GGTAGAGCAG TCGACTAGAA GAAGAAGACA ATAATGTCGT TCTTTAAATT ATTACCTGTT 601 GAGTGGGAAG GGAGCACTAA AAAAAGA Predicted gene structure (within gDNA segment 8427 to 6591): Exon 1 7827 7201 ( 627 n); cDNA 1 627 ( 627 n); score: 1.000 MATCH C06HBa0158P14.1-17- SGN-E303411+ 1.000 627 1.000 C PGS_C06HBa0158P14.1-17-_SGN-E303411+ (7827 7201) Alignment (genomic DNA sequence = upper lines): AAGACGAGGC AATGGGATTG ACAATATGGA GACTTCCGGG AGGTGGGTTC GCCGTAGGAA 7768 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGACGAGGC AATGGGATTG ACAATATGGA GACTTCCGGG AGGTGGGTTC GCCGTAGGAA 60 GATTTTCCGG TGGAAGAAGA GGAGCTGAGA GAGAGCTTCC AGTAGTGTAT ACAGAAATGG 7708 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATTTTCCGG TGGAAGAAGA GGAGCTGAGA GAGAGCTTCC AGTAGTGTAT ACAGAAATGG 120 ACGGTGGATT TAACAATGGG GTACCTAGAA GAATAGCTTG GAGATCAAGA AGAAGCAACA 7648 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACGGTGGATT TAACAATGGG GTACCTAGAA GAATAGCTTG GAGATCAAGA AGAAGCAACA 180 CAGGTCGAAA TGGCAACGGA ATAAGCCGAA TTTTCAACAA CTTCACATCA TTTTTCCGGC 7588 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAGGTCGAAA TGGCAACGGA ATAAGCCGAA TTTTCAACAA CTTCACATCA TTTTTCCGGC 240 GATTAACACC ATCTTCTCAA CATCGATCTC TATCCATACA TTCCAGTAGT TCAGAATCAT 7528 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATTAACACC ATCTTCTCAA CATCGATCTC TATCCATACA TTCCAGTAGT TCAGAATCAT 300 CCGGTTCTGG TTCTGGATCT GCTGTATTCA GGAGTCGAAG TGTATCTTCA AGCACTTCAA 7468 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCGGTTCTGG TTCTGGATCT GCTGTATTCA GGAGTCGAAG TGTATCTTCA AGCACTTCAA 360 TATTCAGTAG GTATTTGAGA AGAAGCAGAA GAAATTGGGT ACCTGAAGAA CGTAATGGAG 7408 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATTCAGTAG GTATTTGAGA AGAAGCAGAA GAAATTGGGT ACCTGAAGAA CGTAATGGAG 420 TAACAAGATG GTAATTACTT AGTCGGAAAA CGCCAATTTT CAATTATTAT TTTTATAGAG 7348 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAACAAGATG GTAATTACTT AGTCGGAAAA CGCCAATTTT CAATTATTAT TTTTATAGAG 480 CAGTCGACTA GAAGCAGAAG ACGATAACCC CCGATGCCAA GTGTAAGGCA ATGTGTGATT 7288 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAGTCGACTA GAAGCAGAAG ACGATAACCC CCGATGCCAA GTGTAAGGCA ATGTGTGATT 540 GGTAGAGCAG TCGACTAGAA GAAGAAGACA ATAATGTCGT TCTTTAAATT ATTACCTGTT 7228 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGTAGAGCAG TCGACTAGAA GAAGAAGACA ATAATGTCGT TCTTTAAATT ATTACCTGTT 600 GAGTGGGAAG GGAGCACTAA AAAAAGA 7201 |||||||||| |||||||||| ||||||| GAGTGGGAAG GGAGCACTAA AAAAAGA 627 hqPGS_C06HBa0158P14.1-17-_SGN-E303411+ (7827 7201) ******************************************************************************** EST sequence 14 +strand 558 n (File: SGN-E230973+) 1 AGATTTTCCG GTGGAAGAAG AGGAGCTGAG AGAGAGCTTC CAGTAGTGTA TACAGAAATG 61 GACGGTGGAT TTAACAATGG GGTACCTAGA AGAATAGCTT GGAGATCAAG AAGAAGCAAC 121 ACAGGTCGAA ATGGCAACGG AATAAGCCGA ATTTTCAACA ACTTCACATC ATTTTTCCGG 181 CGATTAACAC CATCTTCTCA ACATCGATCT CTATCCATAC ATTCCAGTAG TTCAGAATCA 241 TCCGGTTCTG GTTCTGGATC TGCTGTATTC AGGAGTCGAA GTGTATCTTC AAGCACTTCA 301 ATATTCAGTA GGTATTTGAG AAGAAGCAGA AGAAATTGGG TACCTGAAGA ACGTAATGGA 361 GTAACAAGAT GGTAATTACT TAGTCGGAAA ACGCCAATTT TCAATTATTA TTTTTATAGA 421 GCAGTCGACT AGAAGCAGAA GACGATAACC CCCGATGCCA AGTGTAAGGC AATGTGTGAT 481 TGGTAGAGCA GTCGACTAGA AGAAGAAGAC AATAATGTCG TTCTTTAAAT TATTACCTGT 541 TGAGTGGGAA GGGAGCAC Predicted gene structure (within gDNA segment 8368 to 6601): Exon 1 7768 7211 ( 558 n); cDNA 1 558 ( 558 n); score: 1.000 MATCH C06HBa0158P14.1-17- SGN-E230973+ 1.000 558 1.000 C PGS_C06HBa0158P14.1-17-_SGN-E230973+ (7768 7211) Alignment (genomic DNA sequence = upper lines): AGATTTTCCG GTGGAAGAAG AGGAGCTGAG AGAGAGCTTC CAGTAGTGTA TACAGAAATG 7709 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGATTTTCCG GTGGAAGAAG AGGAGCTGAG AGAGAGCTTC CAGTAGTGTA TACAGAAATG 60 GACGGTGGAT TTAACAATGG GGTACCTAGA AGAATAGCTT GGAGATCAAG AAGAAGCAAC 7649 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GACGGTGGAT TTAACAATGG GGTACCTAGA AGAATAGCTT GGAGATCAAG AAGAAGCAAC 120 ACAGGTCGAA ATGGCAACGG AATAAGCCGA ATTTTCAACA ACTTCACATC ATTTTTCCGG 7589 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACAGGTCGAA ATGGCAACGG AATAAGCCGA ATTTTCAACA ACTTCACATC ATTTTTCCGG 180 CGATTAACAC CATCTTCTCA ACATCGATCT CTATCCATAC ATTCCAGTAG TTCAGAATCA 7529 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGATTAACAC CATCTTCTCA ACATCGATCT CTATCCATAC ATTCCAGTAG TTCAGAATCA 240 TCCGGTTCTG GTTCTGGATC TGCTGTATTC AGGAGTCGAA GTGTATCTTC AAGCACTTCA 7469 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCCGGTTCTG GTTCTGGATC TGCTGTATTC AGGAGTCGAA GTGTATCTTC AAGCACTTCA 300 ATATTCAGTA GGTATTTGAG AAGAAGCAGA AGAAATTGGG TACCTGAAGA ACGTAATGGA 7409 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATATTCAGTA GGTATTTGAG AAGAAGCAGA AGAAATTGGG TACCTGAAGA ACGTAATGGA 360 GTAACAAGAT GGTAATTACT TAGTCGGAAA ACGCCAATTT TCAATTATTA TTTTTATAGA 7349 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTAACAAGAT GGTAATTACT TAGTCGGAAA ACGCCAATTT TCAATTATTA TTTTTATAGA 420 GCAGTCGACT AGAAGCAGAA GACGATAACC CCCGATGCCA AGTGTAAGGC AATGTGTGAT 7289 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCAGTCGACT AGAAGCAGAA GACGATAACC CCCGATGCCA AGTGTAAGGC AATGTGTGAT 480 TGGTAGAGCA GTCGACTAGA AGAAGAAGAC AATAATGTCG TTCTTTAAAT TATTACCTGT 7229 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGTAGAGCA GTCGACTAGA AGAAGAAGAC AATAATGTCG TTCTTTAAAT TATTACCTGT 540 TGAGTGGGAA GGGAGCAC 7211 |||||||||| |||||||| TGAGTGGGAA GGGAGCAC 558 hqPGS_C06HBa0158P14.1-17-_SGN-E230973+ (7768 7211) ******************************************************************************** EST sequence 24 +strand 515 n (File: SGN-E235778+) 1 AAGATTTTCC GGTGGAAGAA GAGGAGCTGA GAGAGAGCTT CCAGTAGTGT ATACAGAAAT 61 GGACGGTGGA TTTAACAATG GGGTACCTAG AAGAATAGCT TGGAGATCAA GAAGAAGCAA 121 CACAGGTCGA AATGGCAACG GAATAAGCCG AATTTTCAAC AACTTCACAT CATTTTTCCG 181 GCGATTAACA CCATCTTCTC AACATCGATC TCTATCCATA CATTCCAGTA GTTCAGAATC 241 ATCCGGTTCT GGTTCTGGAT CTGCTGTATT CAGGAGTCGA AGTGTATCTT CAAGCACTTC 301 AATATTCAGT AGGTATTTGA GAAGAAGCAG AAGAAATTGG GTACCTGAAG AACGTAATGG 361 AGTAACAAGA TGGTAATTAC TTAGTCGGAA AACGCCAATT TTCAATTATT ATTTTTATAG 421 AGCAGTCGAC TAGAAGCAGA AGACGATAAC CCCCGATGCC AAGTGTAAGG CAATGTGTGA 481 TTGGTAGAGC AGTCGACTAG AAGAAGAAGA CAATA Predicted gene structure (within gDNA segment 8369 to 6645): Exon 1 7769 7255 ( 515 n); cDNA 1 515 ( 515 n); score: 1.000 MATCH C06HBa0158P14.1-17- SGN-E235778+ 1.000 515 1.000 C PGS_C06HBa0158P14.1-17-_SGN-E235778+ (7769 7255) Alignment (genomic DNA sequence = upper lines): AAGATTTTCC GGTGGAAGAA GAGGAGCTGA GAGAGAGCTT CCAGTAGTGT ATACAGAAAT 7710 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGATTTTCC GGTGGAAGAA GAGGAGCTGA GAGAGAGCTT CCAGTAGTGT ATACAGAAAT 60 GGACGGTGGA TTTAACAATG GGGTACCTAG AAGAATAGCT TGGAGATCAA GAAGAAGCAA 7650 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGACGGTGGA TTTAACAATG GGGTACCTAG AAGAATAGCT TGGAGATCAA GAAGAAGCAA 120 CACAGGTCGA AATGGCAACG GAATAAGCCG AATTTTCAAC AACTTCACAT CATTTTTCCG 7590 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CACAGGTCGA AATGGCAACG GAATAAGCCG AATTTTCAAC AACTTCACAT CATTTTTCCG 180 GCGATTAACA CCATCTTCTC AACATCGATC TCTATCCATA CATTCCAGTA GTTCAGAATC 7530 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCGATTAACA CCATCTTCTC AACATCGATC TCTATCCATA CATTCCAGTA GTTCAGAATC 240 ATCCGGTTCT GGTTCTGGAT CTGCTGTATT CAGGAGTCGA AGTGTATCTT CAAGCACTTC 7470 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCCGGTTCT GGTTCTGGAT CTGCTGTATT CAGGAGTCGA AGTGTATCTT CAAGCACTTC 300 AATATTCAGT AGGTATTTGA GAAGAAGCAG AAGAAATTGG GTACCTGAAG AACGTAATGG 7410 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATATTCAGT AGGTATTTGA GAAGAAGCAG AAGAAATTGG GTACCTGAAG AACGTAATGG 360 AGTAACAAGA TGGTAATTAC TTAGTCGGAA AACGCCAATT TTCAATTATT ATTTTTATAG 7350 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTAACAAGA TGGTAATTAC TTAGTCGGAA AACGCCAATT TTCAATTATT ATTTTTATAG 420 AGCAGTCGAC TAGAAGCAGA AGACGATAAC CCCCGATGCC AAGTGTAAGG CAATGTGTGA 7290 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCAGTCGAC TAGAAGCAGA AGACGATAAC CCCCGATGCC AAGTGTAAGG CAATGTGTGA 480 TTGGTAGAGC AGTCGACTAG AAGAAGAAGA CAATA 7255 |||||||||| |||||||||| |||||||||| ||||| TTGGTAGAGC AGTCGACTAG AAGAAGAAGA CAATA 515 hqPGS_C06HBa0158P14.1-17-_SGN-E235778+ (7769 7255) ******************************************************************************** EST sequence 13 +strand 421 n (File: SGN-E301410+) 1 AGAAGAATAG CTTGGAGATC AAGAAGAAGC AACACAGGTC GAAATGGCAA CGGAATAAGC 61 CGAATTTTCA ACAACTTCAC ATCATTTTTC CGGCGATTAA CACCATCTTC TCAACATCGA 121 TCTCTATCCA TACATTCCAG TAGTTCAGAA TCATCCGGTT CTGGTTCTGG ATCTGCTGTA 181 TTCAGGAGTC GAAGTGTATC TTCAAGCACT TCAATATTCA GTAGGTATTT GAGAAGAAGC 241 AGAAGAAATT GGGTACCTGA AGAACGTAAT GGAGTAACAA GATGGTAATT ACTTAGTCGG 301 AAAACGCCAA TTTTCAATTA TTATTTTTAT AGAGCAGTCG ACTAGAAGCA GAAGACGATA 361 ACCCCCGATG CCAAGTGTAA GGCAATGTGT GATTGGTAGA GCAGTCGACT AGAAGAAGAA 421 G Predicted gene structure (within gDNA segment 8281 to 6651): Exon 1 7681 7261 ( 421 n); cDNA 1 421 ( 421 n); score: 1.000 MATCH C06HBa0158P14.1-17- SGN-E301410+ 1.000 421 1.000 C PGS_C06HBa0158P14.1-17-_SGN-E301410+ (7681 7261) Alignment (genomic DNA sequence = upper lines): AGAAGAATAG CTTGGAGATC AAGAAGAAGC AACACAGGTC GAAATGGCAA CGGAATAAGC 7622 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAAGAATAG CTTGGAGATC AAGAAGAAGC AACACAGGTC GAAATGGCAA CGGAATAAGC 60 CGAATTTTCA ACAACTTCAC ATCATTTTTC CGGCGATTAA CACCATCTTC TCAACATCGA 7562 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGAATTTTCA ACAACTTCAC ATCATTTTTC CGGCGATTAA CACCATCTTC TCAACATCGA 120 TCTCTATCCA TACATTCCAG TAGTTCAGAA TCATCCGGTT CTGGTTCTGG ATCTGCTGTA 7502 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTCTATCCA TACATTCCAG TAGTTCAGAA TCATCCGGTT CTGGTTCTGG ATCTGCTGTA 180 TTCAGGAGTC GAAGTGTATC TTCAAGCACT TCAATATTCA GTAGGTATTT GAGAAGAAGC 7442 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCAGGAGTC GAAGTGTATC TTCAAGCACT TCAATATTCA GTAGGTATTT GAGAAGAAGC 240 AGAAGAAATT GGGTACCTGA AGAACGTAAT GGAGTAACAA GATGGTAATT ACTTAGTCGG 7382 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAAGAAATT GGGTACCTGA AGAACGTAAT GGAGTAACAA GATGGTAATT ACTTAGTCGG 300 AAAACGCCAA TTTTCAATTA TTATTTTTAT AGAGCAGTCG ACTAGAAGCA GAAGACGATA 7322 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAACGCCAA TTTTCAATTA TTATTTTTAT AGAGCAGTCG ACTAGAAGCA GAAGACGATA 360 ACCCCCGATG CCAAGTGTAA GGCAATGTGT GATTGGTAGA GCAGTCGACT AGAAGAAGAA 7262 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACCCCCGATG CCAAGTGTAA GGCAATGTGT GATTGGTAGA GCAGTCGACT AGAAGAAGAA 420 G 7261 | G 421 hqPGS_C06HBa0158P14.1-17-_SGN-E301410+ (7681 7261) ******************************************************************************** EST sequence 29 +strand 541 n (File: SGN-E237593+) 1 CGACAACATT TCTAGACCCA GAAACGAAGA CGAGGCAATG GGATTGACAA TATGGAGACT 61 TCCGGGAGGT GGGTTCGCCG TAGGAAGATT TTCCGGTGGA AGAAGAGGAG CTGAGAGAGA 121 GCTTCCAGTA GTGTATACAG AAATGGACGG TGGATTTAAC AATGGGGTAC CTAGAAGAAT 181 AGCTTGGAGA TCAAGAAGAA GCAACACAGG TCGAAATGGC AACGGAATAA GCCGAATTTT 241 CAACAACTTC ACATCATTTT TCCGGCGATT AACACCATCT TCTCAACATC GATCTCTATC 301 CATACATTCC AGTAGTTCAG AATCATCCGG TTCTGGTTCT GGATCTGCTG TATTCAGGAG 361 TCGAAGTGTA TCTTCAAGCA CTTCAATATT CAGTAGGTAT TTGAGAAGAA GCAGAAGAAA 421 TTGGGTACCT GAAGAACGTA ATGGAGTAAC AAGATGGTAA TTACTTAGTC GGAAAACGCC 481 AATTTTCAAT TATTATTTTT ATTAGGCAGT CGACTAGAAA CAGAAGACGA TAACCCCCGA 541 T Predicted gene structure (within gDNA segment 8453 to 6703): Exon 1 7853 7313 ( 541 n); cDNA 1 541 ( 541 n); score: 0.993 MATCH C06HBa0158P14.1-17- SGN-E237593+ 0.993 541 1.000 C PGS_C06HBa0158P14.1-17-_SGN-E237593+ (7853 7313) Alignment (genomic DNA sequence = upper lines): CGACAACATT TCTAGACCCA GAAACGAAGA CGAGGCAATG GGATTGACAA TATGGAGACT 7794 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGACAACATT TCTAGACCCA GAAACGAAGA CGAGGCAATG GGATTGACAA TATGGAGACT 60 TCCGGGAGGT GGGTTCGCCG TAGGAAGATT TTCCGGTGGA AGAAGAGGAG CTGAGAGAGA 7734 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCCGGGAGGT GGGTTCGCCG TAGGAAGATT TTCCGGTGGA AGAAGAGGAG CTGAGAGAGA 120 GCTTCCAGTA GTGTATACAG AAATGGACGG TGGATTTAAC AATGGGGTAC CTAGAAGAAT 7674 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCTTCCAGTA GTGTATACAG AAATGGACGG TGGATTTAAC AATGGGGTAC CTAGAAGAAT 180 AGCTTGGAGA TCAAGAAGAA GCAACACAGG TCGAAATGGC AACGGAATAA GCCGAATTTT 7614 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCTTGGAGA TCAAGAAGAA GCAACACAGG TCGAAATGGC AACGGAATAA GCCGAATTTT 240 CAACAACTTC ACATCATTTT TCCGGCGATT AACACCATCT TCTCAACATC GATCTCTATC 7554 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAACAACTTC ACATCATTTT TCCGGCGATT AACACCATCT TCTCAACATC GATCTCTATC 300 CATACATTCC AGTAGTTCAG AATCATCCGG TTCTGGTTCT GGATCTGCTG TATTCAGGAG 7494 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATACATTCC AGTAGTTCAG AATCATCCGG TTCTGGTTCT GGATCTGCTG TATTCAGGAG 360 TCGAAGTGTA TCTTCAAGCA CTTCAATATT CAGTAGGTAT TTGAGAAGAA GCAGAAGAAA 7434 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCGAAGTGTA TCTTCAAGCA CTTCAATATT CAGTAGGTAT TTGAGAAGAA GCAGAAGAAA 420 TTGGGTACCT GAAGAACGTA ATGGAGTAAC AAGATGGTAA TTACTTAGTC GGAAAACGCC 7374 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGGGTACCT GAAGAACGTA ATGGAGTAAC AAGATGGTAA TTACTTAGTC GGAAAACGCC 480 AATTTTCAAT TATTATTTTT ATAGAGCAGT CGACTAGAAG CAGAAGACGA TAACCCCCGA 7314 |||||||||| |||||||||| || ||||| ||||||||| |||||||||| |||||||||| AATTTTCAAT TATTATTTTT ATTAGGCAGT CGACTAGAAA CAGAAGACGA TAACCCCCGA 540 T 7313 | T 541 hqPGS_C06HBa0158P14.1-17-_SGN-E237593+ (7853 7313) ******************************************************************************** EST sequence 4 +strand 649 n (File: SGN-E346740+) 1 CGGTTTTGGT CGCCCGGAAA ATCCACCGGC GTCGAAATCA GCGATTGAGT CGATGCCGAT 61 TATTCAAATA GCTTCAAATC ACGTAAATTC CGAGACCCAT TGCGCTGTTT GTAAAGAAGC 121 TTTCGATTTA GGATCTGAAG CTCGAGAAAT GCCCTGTAAA CACATCTACC ATTCCGATTG 181 TATCCTCCCA TGGCTATCTC TTCGAAATTC GTGCCCCGTT TGCCGACACG AATTACCAAC 241 GGAATCAACT GAAACTACAA ACTCCGACAA CATTTCTAGA CCCAGAAACG AAGACGAGGC 301 AATGGGATTG ACAATATGGA GACTTCCGGG AGGGTGGGTT CGCCGTAGGA AGATTTTCCG 361 GTGGAAGAAG AGGAGCTGAG AGAGAGCTTC CAGTAGTGTA TACAGAAATG GACGGTGGAT 421 TTAACAATGG GGTACCTAGA AGAATANGCT TGGAGATCAA GAAGAAGCAA CACAGGGTCG 481 AAATGGCAAC GGAATAAGCC GAATTTTCAA CAACTTCACA TCATTTTTCC GGCGATTAAC 541 ACCATCTTCT AACNATCGAT CTCTATCCAT ACATTCCAGT AGTTCAGATC ATCCCGTTTC 601 TGGTTCTGGA TCTGCTGTAT TCAAGAGTCG NAAGTGTATC TTCAAGCAC Predicted gene structure (within gDNA segment 8717 to 6863): Exon 1 8117 7473 ( 645 n); cDNA 1 649 ( 649 n); score: 0.971 MATCH C06HBa0158P14.1-17- SGN-E346740+ 0.971 645 0.994 C PGS_C06HBa0158P14.1-17-_SGN-E346740+ (8117 7473) Alignment (genomic DNA sequence = upper lines): CGGTTTTGGT CGCCCGGAAA ATCCACCGGC GTCGAAATCA GCGATTGAGT CGATGCCGAT 8058 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGGTTTTGGT CGCCCGGAAA ATCCACCGGC GTCGAAATCA GCGATTGAGT CGATGCCGAT 60 TATTCAAATA GCTTCAAATC ACGTAAATTC CGAGACCCAT TGCGCTGTTT GTAAAGAAGC 7998 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATTCAAATA GCTTCAAATC ACGTAAATTC CGAGACCCAT TGCGCTGTTT GTAAAGAAGC 120 TTTCGATTTA GGATCTGAAG CTCGAGAAAT GCCCTGTAAA CACATCTACC ATTCCGATTG 7938 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTCGATTTA GGATCTGAAG CTCGAGAAAT GCCCTGTAAA CACATCTACC ATTCCGATTG 180 TATCCTCCCA TGGCTATCTC TTCGAAATTC GTGCCCCGTT TGCCGACACG AATTACCAAC 7878 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATCCTCCCA TGGCTATCTC TTCGAAATTC GTGCCCCGTT TGCCGACACG AATTACCAAC 240 GGAATCAACT GAAACTACAA ACTCCGACAA CATTTCTAGA CCCAGAAACG AAGACGAGGC 7818 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGAATCAACT GAAACTACAA ACTCCGACAA CATTTCTAGA CCCAGAAACG AAGACGAGGC 300 AATGGGATTG ACAATATGGA GACTTCCGGG A-GGTGGGTT CGCCGTAGGA AGATTTTCCG 7759 |||||||||| |||||||||| |||||||||| | |||||||| |||||||||| |||||||||| AATGGGATTG ACAATATGGA GACTTCCGGG AGGGTGGGTT CGCCGTAGGA AGATTTTCCG 360 GTGGAAGAAG AGGAGCTGAG AGAGAGCTTC CAGTAGTGTA TACAGAAATG GACGGTGGAT 7699 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGGAAGAAG AGGAGCTGAG AGAGAGCTTC CAGTAGTGTA TACAGAAATG GACGGTGGAT 420 TTAACAATGG GGTACCTAGA AGAATA-GCT TGGAGATCAA GAAGAAGCAA CACA-GGTCG 7641 |||||||||| |||||||||| |||||| ||| |||||||||| |||||||||| |||| ||||| TTAACAATGG GGTACCTAGA AGAATANGCT TGGAGATCAA GAAGAAGCAA CACAGGGTCG 480 AAATGGCAAC GGAATAAGCC GAATTTTCAA CAACTTCACA TCATTTTTCC GGCGATTAAC 7581 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAATGGCAAC GGAATAAGCC GAATTTTCAA CAACTTCACA TCATTTTTCC GGCGATTAAC 540 ACCATCTTCT CAACATCGAT CTCTATCCAT ACATTCCAGT AGTTCAGAAT CAT-CCGGTT 7522 |||||||||| | |||||| |||||||||| |||||||||| ||||||| || ||| ||| || ACCATCTTCT AACNATCGAT CTCTATCCAT ACATTCCAGT AGTTCAG-AT CATCCCGTTT 599 CTGGTTCTGG ATCTGCTGTA TTCAGGAGTC G-AAGTGTAT CTTCAAGCAC 7473 |||||||||| |||||||||| |||| ||||| | |||||||| |||||||||| CTGGTTCTGG ATCTGCTGTA TTCAAGAGTC GNAAGTGTAT CTTCAAGCAC 649 hqPGS_C06HBa0158P14.1-17-_SGN-E346740+ (8117 7473) ******************************************************************************** EST sequence 16 +strand 618 n (File: SGN-E214348+) 1 ACGGTTTTGG TCGCCCGGAA AATCCACCGG CGTCGAAATC AGCGATTGAG TCGATGCCGA 61 TTATTCAAAT AGCTTCAAAT CACGTAAATT CCGAGACCCA TTGCGCTGTT TGTAAAGAAG 121 CTTTCGATTT AGGATCTGAA GCTCGAGAAA TGCCCTGTAA ACACATCTAC CATTCCGATT 181 GTATCCTCCC ATGGCTATCT CTTCGAAATT CGTGCCCCGT TTGCCGACAC GAATTACCAA 241 CGGAATCAAC TGAAACTACA AACTCCGACA ACATTTCTAG ACCCAGAAAC GAAGACGAGG 301 CAATGGGATT GACAATATGG AGACTTCCGG GAGGTGGGTT CGCCGTAGGA AGATTTTCCG 361 GTGGAAGAAG AGGAGCTGAG AGAGAGCTTC CAGTAGTGTA TACAGAAATG GACGGTGGAT 421 TTAACAATGG GGTACCTAGA AGAATAGCTT GGAGATCAAG AAGAAGCAAC ACAGGTCGAA 481 ATGGCAACGG AATAAGCCGA ATTTTCAACA ACTTCACATC ATTTTTCCGG CGATTAACAC 541 CATCTTCTCA ACATCGATCT CTATCCATAC ATTCCAGTAG TTCAGAATCA TCCGGTTCTG 601 GTTCTGGATC TGCTGTAT Predicted gene structure (within gDNA segment 8718 to 6891): Exon 1 8118 7501 ( 618 n); cDNA 1 618 ( 618 n); score: 1.000 MATCH C06HBa0158P14.1-17- SGN-E214348+ 1.000 618 1.000 C PGS_C06HBa0158P14.1-17-_SGN-E214348+ (8118 7501) Alignment (genomic DNA sequence = upper lines): ACGGTTTTGG TCGCCCGGAA AATCCACCGG CGTCGAAATC AGCGATTGAG TCGATGCCGA 8059 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACGGTTTTGG TCGCCCGGAA AATCCACCGG CGTCGAAATC AGCGATTGAG TCGATGCCGA 60 TTATTCAAAT AGCTTCAAAT CACGTAAATT CCGAGACCCA TTGCGCTGTT TGTAAAGAAG 7999 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTATTCAAAT AGCTTCAAAT CACGTAAATT CCGAGACCCA TTGCGCTGTT TGTAAAGAAG 120 CTTTCGATTT AGGATCTGAA GCTCGAGAAA TGCCCTGTAA ACACATCTAC CATTCCGATT 7939 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTTCGATTT AGGATCTGAA GCTCGAGAAA TGCCCTGTAA ACACATCTAC CATTCCGATT 180 GTATCCTCCC ATGGCTATCT CTTCGAAATT CGTGCCCCGT TTGCCGACAC GAATTACCAA 7879 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTATCCTCCC ATGGCTATCT CTTCGAAATT CGTGCCCCGT TTGCCGACAC GAATTACCAA 240 CGGAATCAAC TGAAACTACA AACTCCGACA ACATTTCTAG ACCCAGAAAC GAAGACGAGG 7819 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGGAATCAAC TGAAACTACA AACTCCGACA ACATTTCTAG ACCCAGAAAC GAAGACGAGG 300 CAATGGGATT GACAATATGG AGACTTCCGG GAGGTGGGTT CGCCGTAGGA AGATTTTCCG 7759 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAATGGGATT GACAATATGG AGACTTCCGG GAGGTGGGTT CGCCGTAGGA AGATTTTCCG 360 GTGGAAGAAG AGGAGCTGAG AGAGAGCTTC CAGTAGTGTA TACAGAAATG GACGGTGGAT 7699 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGGAAGAAG AGGAGCTGAG AGAGAGCTTC CAGTAGTGTA TACAGAAATG GACGGTGGAT 420 TTAACAATGG GGTACCTAGA AGAATAGCTT GGAGATCAAG AAGAAGCAAC ACAGGTCGAA 7639 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTAACAATGG GGTACCTAGA AGAATAGCTT GGAGATCAAG AAGAAGCAAC ACAGGTCGAA 480 ATGGCAACGG AATAAGCCGA ATTTTCAACA ACTTCACATC ATTTTTCCGG CGATTAACAC 7579 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGGCAACGG AATAAGCCGA ATTTTCAACA ACTTCACATC ATTTTTCCGG CGATTAACAC 540 CATCTTCTCA ACATCGATCT CTATCCATAC ATTCCAGTAG TTCAGAATCA TCCGGTTCTG 7519 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATCTTCTCA ACATCGATCT CTATCCATAC ATTCCAGTAG TTCAGAATCA TCCGGTTCTG 600 GTTCTGGATC TGCTGTAT 7501 |||||||||| |||||||| GTTCTGGATC TGCTGTAT 618 hqPGS_C06HBa0158P14.1-17-_SGN-E214348+ (8118 7501) ******************************************************************************** EST sequence 22 +strand 643 n (File: SGN-E235290+) 1 TGGGATCTGG GTTTGATCGG TTACTTGATC AGTTAGCACA GATCGAGGTG AACGGTTTTG 61 GTCGCCCGGA AAATCCACCG GCGTCGAAAT CAGCGATTGA GTCCATGCCG ATTATTCAAA 121 TAGCTTCAAA TCACGTAAAT TCCGAGACCC ATTGCGCTGA TTGTAAAGAA GCTTTCGATT 181 TAGGATCTGA AGCTCGAGAA ATGCCCTGTA AACACATATA CCATTCCGAT TGTATCCTCC 241 CATGGCTATC TCTTCGAAAT TCGTGCCCCG TTTGCCGACA CGAATTACCA TCTGACTCAA 301 CTGAAACTAC AAACTCCGAC AACATTTCTA GACCCAGAAA CGTAGACGAG GCAATGGGAT 361 TGACAATATG GAGACTTCCG GGAGGTGGAT TCGCCGTAGG AAGATTTTCC GGTGGAAGAA 421 GAGGAGCTGA GAGAGAGCTT ACAGTAGTGT ATACAGAAAT GGACGGTGGA TTTAACAATG 481 GGGTACCTAG AAGAATAGCT TGGAGATCAA GAAGAAGCTA CACAGGTCGA AATGGCAACG 541 GAATAAGCCG AATTTTCAAC AACTTCACAT CATTTTTCCG GCGATTAACA CCATCTTGTC 601 AACATCGATC TCTATCCATA CATTCCAGTA GTTCAGAATC ATC Predicted gene structure (within gDNA segment 8769 to 6917): Exon 1 8169 7527 ( 643 n); cDNA 1 643 ( 643 n); score: 0.983 MATCH C06HBa0158P14.1-17- SGN-E235290+ 0.983 643 1.000 C PGS_C06HBa0158P14.1-17-_SGN-E235290+ (8169 7527) Alignment (genomic DNA sequence = upper lines): TGGGATCTGG GTTTGATCGG TTACTTGATC AGTTAGCACA GATCGAGGTG AACGGTTTTG 8110 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGGATCTGG GTTTGATCGG TTACTTGATC AGTTAGCACA GATCGAGGTG AACGGTTTTG 60 GTCGCCCGGA AAATCCACCG GCGTCGAAAT CAGCGATTGA GTCGATGCCG ATTATTCAAA 8050 |||||||||| |||||||||| |||||||||| |||||||||| ||| |||||| |||||||||| GTCGCCCGGA AAATCCACCG GCGTCGAAAT CAGCGATTGA GTCCATGCCG ATTATTCAAA 120 TAGCTTCAAA TCACGTAAAT TCCGAGACCC ATTGCGCTGT TTGTAAAGAA GCTTTCGATT 7990 |||||||||| |||||||||| |||||||||| ||||||||| |||||||||| |||||||||| TAGCTTCAAA TCACGTAAAT TCCGAGACCC ATTGCGCTGA TTGTAAAGAA GCTTTCGATT 180 TAGGATCTGA AGCTCGAGAA ATGCCCTGTA AACACATCTA CCATTCCGAT TGTATCCTCC 7930 |||||||||| |||||||||| |||||||||| ||||||| || |||||||||| |||||||||| TAGGATCTGA AGCTCGAGAA ATGCCCTGTA AACACATATA CCATTCCGAT TGTATCCTCC 240 CATGGCTATC TCTTCGAAAT TCGTGCCCCG TTTGCCGACA CGAATTACCA ACGGAATCAA 7870 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| | || |||| CATGGCTATC TCTTCGAAAT TCGTGCCCCG TTTGCCGACA CGAATTACCA TCTGACTCAA 300 CTGAAACTAC AAACTCCGAC AACATTTCTA GACCCAGAAA CGAAGACGAG GCAATGGGAT 7810 |||||||||| |||||||||| |||||||||| |||||||||| || ||||||| |||||||||| CTGAAACTAC AAACTCCGAC AACATTTCTA GACCCAGAAA CGTAGACGAG GCAATGGGAT 360 TGACAATATG GAGACTTCCG GGAGGTGGGT TCGCCGTAGG AAGATTTTCC GGTGGAAGAA 7750 |||||||||| |||||||||| |||||||| | |||||||||| |||||||||| |||||||||| TGACAATATG GAGACTTCCG GGAGGTGGAT TCGCCGTAGG AAGATTTTCC GGTGGAAGAA 420 GAGGAGCTGA GAGAGAGCTT CCAGTAGTGT ATACAGAAAT GGACGGTGGA TTTAACAATG 7690 |||||||||| |||||||||| ||||||||| |||||||||| |||||||||| |||||||||| GAGGAGCTGA GAGAGAGCTT ACAGTAGTGT ATACAGAAAT GGACGGTGGA TTTAACAATG 480 GGGTACCTAG AAGAATAGCT TGGAGATCAA GAAGAAGCAA CACAGGTCGA AATGGCAACG 7630 |||||||||| |||||||||| |||||||||| |||||||| | |||||||||| |||||||||| GGGTACCTAG AAGAATAGCT TGGAGATCAA GAAGAAGCTA CACAGGTCGA AATGGCAACG 540 GAATAAGCCG AATTTTCAAC AACTTCACAT CATTTTTCCG GCGATTAACA CCATCTTCTC 7570 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||||||| || GAATAAGCCG AATTTTCAAC AACTTCACAT CATTTTTCCG GCGATTAACA CCATCTTGTC 600 AACATCGATC TCTATCCATA CATTCCAGTA GTTCAGAATC ATC 7527 |||||||||| |||||||||| |||||||||| |||||||||| ||| AACATCGATC TCTATCCATA CATTCCAGTA GTTCAGAATC ATC 643 hqPGS_C06HBa0158P14.1-17-_SGN-E235290+ (8169 7527) ******************************************************************************** EST sequence 7 +strand 718 n (File: SGN-E389716+) 1 CTTCGTAGTC CATCTGAAGC ACCTGGGGAG GATGAAGCTG CTGCAGCTGC AGAGGAGCGG 61 AGTTATGAGC TTTATTATGA TGATGGTGAA GGTTCAGGTC TCAGGCCGTT GCCGCCGACG 121 ATGTCGGAGT TTTTGATGGG ATCTGGGTTT GATCGGTTAC TTGATCAGTT AGCACAGATC 181 GAGGTGAACG GTTTTGGTCG CCCGGAAAAT CCACCGGCGT CGAAATCAGC GATTGAGTCG 241 ATGCCGATTA TTCAAATAGC TTCAAATCAC GTAAATTCCG AGACCCATTG CGCTGTTTGT 301 AAAGAAGCTT TCGATTTAGG ATCTGAAGCT CGAGAAATGC CCTGTAAACA CATCTACCAT 361 TCCGATTGTA TCCTCCCATG GCTATCTCTT CGAAATTCGT GCCCCGTTTG CCGACACGAA 421 TTACCAACGG AATCAACTGA AACTACAAAC TCCGACAACA TTTCTAGACC CAGAAACGAA 481 GACGAGGCAA TGGGATTGAC AATATGGAGA CTTCCGGGAG GTGGGTTCGC CGTAGGAAGA 541 TTTTCCGGTG GAAGAAGAGG AGCTGAGAGA GAGCTTCCAG TAGTGTATAC AGAAATGGAC 601 GGTGGNATTT ACAATGGGGT ACCTAGAAGA ATAGCTTGGG AGATCAGAAG AAAGCACACA 661 GGTCGAAATG GGCACGGAAA TAGCCGAATT TTCACAACTT CACATCATTT TTCCGGCG Predicted gene structure (within gDNA segment 8905 to 6555): Exon 1 8305 7587 ( 719 n); cDNA 1 718 ( 718 n); score: 0.980 MATCH C06HBa0158P14.1-17- SGN-E389716+ 0.980 719 1.001 C PGS_C06HBa0158P14.1-17-_SGN-E389716+ (8305 7587) Alignment (genomic DNA sequence = upper lines): CTTCGTAGTC CATCTGAAGC ACCTGGGGAG GATGAAGCTG CTGCAGCTGC AGAGGAGCGG 8246 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTCGTAGTC CATCTGAAGC ACCTGGGGAG GATGAAGCTG CTGCAGCTGC AGAGGAGCGG 60 AGTTATGAGC TTTATTATGA TGATGGTGAA GGTTCAGGTC TCAGGCCGTT GCCGCCGACG 8186 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTTATGAGC TTTATTATGA TGATGGTGAA GGTTCAGGTC TCAGGCCGTT GCCGCCGACG 120 ATGTCGGAGT TTTTGATGGG ATCTGGGTTT GATCGGTTAC TTGATCAGTT AGCACAGATC 8126 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGTCGGAGT TTTTGATGGG ATCTGGGTTT GATCGGTTAC TTGATCAGTT AGCACAGATC 180 GAGGTGAACG GTTTTGGTCG CCCGGAAAAT CCACCGGCGT CGAAATCAGC GATTGAGTCG 8066 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGGTGAACG GTTTTGGTCG CCCGGAAAAT CCACCGGCGT CGAAATCAGC GATTGAGTCG 240 ATGCCGATTA TTCAAATAGC TTCAAATCAC GTAAATTCCG AGACCCATTG CGCTGTTTGT 8006 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGCCGATTA TTCAAATAGC TTCAAATCAC GTAAATTCCG AGACCCATTG CGCTGTTTGT 300 AAAGAAGCTT TCGATTTAGG ATCTGAAGCT CGAGAAATGC CCTGTAAACA CATCTACCAT 7946 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAGAAGCTT TCGATTTAGG ATCTGAAGCT CGAGAAATGC CCTGTAAACA CATCTACCAT 360 TCCGATTGTA TCCTCCCATG GCTATCTCTT CGAAATTCGT GCCCCGTTTG CCGACACGAA 7886 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCCGATTGTA TCCTCCCATG GCTATCTCTT CGAAATTCGT GCCCCGTTTG CCGACACGAA 420 TTACCAACGG AATCAACTGA AACTACAAAC TCCGACAACA TTTCTAGACC CAGAAACGAA 7826 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTACCAACGG AATCAACTGA AACTACAAAC TCCGACAACA TTTCTAGACC CAGAAACGAA 480 GACGAGGCAA TGGGATTGAC AATATGGAGA CTTCCGGGAG GTGGGTTCGC CGTAGGAAGA 7766 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GACGAGGCAA TGGGATTGAC AATATGGAGA CTTCCGGGAG GTGGGTTCGC CGTAGGAAGA 540 TTTTCCGGTG GAAGAAGAGG AGCTGAGAGA GAGCTTCCAG TAGTGTATAC AGAAATGGAC 7706 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTTCCGGTG GAAGAAGAGG AGCTGAGAGA GAGCTTCCAG TAGTGTATAC AGAAATGGAC 600 GGTGGATTTA ACAATGGGGT ACCTAGAAGA ATAGCTTG-G AGATCAAGAA GAAGCAACAC 7647 ||||| || |||||||||| |||||||||| |||||||| | ||||| |||| ||| |||| GGTGGNATTT ACAATGGGGT ACCTAGAAGA ATAGCTTGGG AGATC-AGAA GAAAGCACAC 659 AGGTCGAAAT GGCAACGGAA TAAGCCGAAT TTTCAACAAC TTCACATCAT TTTTCCGGCG 7587 |||||||||| || |||||| |||||||| |||| ||||| |||||||||| |||||||||| AGGTCGAAAT GGGCACGGAA ATAGCCGAAT TTTC-ACAAC TTCACATCAT TTTTCCGGCG 718 hqPGS_C06HBa0158P14.1-17-_SGN-E389716+ (8305 7587) ******************************************************************************** EST sequence 9 +strand 712 n (File: SGN-E550068+) 1 CTTCGTAGTC CATCTGAAGC ACCTGGGGAG GATGAAGCTG CTGCAGCTGC AGAGGAGCGG 61 AGTTATGAGC TTTATTATGA TGATGGTGAA GGTTCAGGTC TCAGGCCGTT GCCGCCGACG 121 ATGTCGGAGT TTTTGATGGG ATCTGGGTTT GATCGGTTAC TTGATCAGTT AGCACAGATC 181 GAGGTGAACG GTTTTGGTCG CCCGGAAAAT CCACCGGCGT CGAAATCAGC GATTGAGTCG 241 ATGCCGATTA TTCAAATAGC TTCAAATCAC GTAAATTCCG AGACCCATTG CGCTGTTTGT 301 AAAGAAGCTT TCGATTTAGG ATCTGAAGCT CGAGAAATGC CCTGTAAACA CATCTACCAT 361 TCCGATTGTA TCCTCCCATG GCTATCTCTT CGAAATTCGT GCCCCGTTTG CCGACACGAA 421 TTACCAACGG AATCAACTGA AACTACAAAC TCCGACAACA TTTCTAGACC CAGAAACGAA 481 GACGAGGCAA TGGGATTGAC AATATGGAGA CTTCCGGGAG GTGGGTTCGC CGTACGAAGA 541 TTTTCCGGTG GAAGAAGAGG AGCTGAAGAA AAGCTTCCAG TAGTGTATAC AGAAATGGAC 601 GGTGGATTTA ACAATGGGGT ACCTAGAAGA ATAGCTTGGA GATCAAGAAG AAGCAACACA 661 GGTCGAAATG GCAACGGAAT AAGCCGAATT TCAACAACTT CACATCATTT TT Predicted gene structure (within gDNA segment 8905 to 6983): Exon 1 8305 7593 ( 713 n); cDNA 1 712 ( 712 n); score: 0.992 MATCH C06HBa0158P14.1-17- SGN-E550068+ 0.992 713 1.001 C PGS_C06HBa0158P14.1-17-_SGN-E550068+ (8305 7593) Alignment (genomic DNA sequence = upper lines): CTTCGTAGTC CATCTGAAGC ACCTGGGGAG GATGAAGCTG CTGCAGCTGC AGAGGAGCGG 8246 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTCGTAGTC CATCTGAAGC ACCTGGGGAG GATGAAGCTG CTGCAGCTGC AGAGGAGCGG 60 AGTTATGAGC TTTATTATGA TGATGGTGAA GGTTCAGGTC TCAGGCCGTT GCCGCCGACG 8186 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTTATGAGC TTTATTATGA TGATGGTGAA GGTTCAGGTC TCAGGCCGTT GCCGCCGACG 120 ATGTCGGAGT TTTTGATGGG ATCTGGGTTT GATCGGTTAC TTGATCAGTT AGCACAGATC 8126 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGTCGGAGT TTTTGATGGG ATCTGGGTTT GATCGGTTAC TTGATCAGTT AGCACAGATC 180 GAGGTGAACG GTTTTGGTCG CCCGGAAAAT CCACCGGCGT CGAAATCAGC GATTGAGTCG 8066 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGGTGAACG GTTTTGGTCG CCCGGAAAAT CCACCGGCGT CGAAATCAGC GATTGAGTCG 240 ATGCCGATTA TTCAAATAGC TTCAAATCAC GTAAATTCCG AGACCCATTG CGCTGTTTGT 8006 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGCCGATTA TTCAAATAGC TTCAAATCAC GTAAATTCCG AGACCCATTG CGCTGTTTGT 300 AAAGAAGCTT TCGATTTAGG ATCTGAAGCT CGAGAAATGC CCTGTAAACA CATCTACCAT 7946 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAGAAGCTT TCGATTTAGG ATCTGAAGCT CGAGAAATGC CCTGTAAACA CATCTACCAT 360 TCCGATTGTA TCCTCCCATG GCTATCTCTT CGAAATTCGT GCCCCGTTTG CCGACACGAA 7886 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCCGATTGTA TCCTCCCATG GCTATCTCTT CGAAATTCGT GCCCCGTTTG CCGACACGAA 420 TTACCAACGG AATCAACTGA AACTACAAAC TCCGACAACA TTTCTAGACC CAGAAACGAA 7826 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTACCAACGG AATCAACTGA AACTACAAAC TCCGACAACA TTTCTAGACC CAGAAACGAA 480 GACGAGGCAA TGGGATTGAC AATATGGAGA CTTCCGGGAG GTGGGTTCGC CGTAGGAAGA 7766 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||| ||||| GACGAGGCAA TGGGATTGAC AATATGGAGA CTTCCGGGAG GTGGGTTCGC CGTACGAAGA 540 TTTTCCGGTG GAAGAAGAGG AGCTGAGAGA GAGCTTCCAG TAGTGTATAC AGAAATGGAC 7706 |||||||||| |||||||||| |||||| | ||||||||| |||||||||| |||||||||| TTTTCCGGTG GAAGAAGAGG AGCTGAAGAA AAGCTTCCAG TAGTGTATAC AGAAATGGAC 600 GGTGGATTTA ACAATGGGGT ACCTAGAAGA ATAGCTTGGA GATCAAGAAG AAGCAACACA 7646 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGTGGATTTA ACAATGGGGT ACCTAGAAGA ATAGCTTGGA GATCAAGAAG AAGCAACACA 660 GGTCGAAATG GCAACGGAAT AAGCCGAATT TTCAACAACT TCACATCATT TTT 7593 |||||||||| |||||||||| |||||||| | |||||||||| |||||||||| ||| GGTCGAAATG GCAACGGAAT AAGCCGAA-T TTCAACAACT TCACATCATT TTT 712 hqPGS_C06HBa0158P14.1-17-_SGN-E550068+ (8305 7593) ******************************************************************************** EST sequence 10 +strand 364 n (File: SGN-E204890+) 1 AGCTTTCGAT TTAGGATCTG AAGCTCGAGA AATGCCCTGT AAACACATCT ACCATTCCGA 61 TTGTATCCTC CCATGGCTAT CTCTTCGAAA TTCGTGCCCC GTTTGCCGAC ACGAATTACC 121 AACGGAATCA ACTGAAACTA CAAACTCCGA CAACATTTCT AGACCCAGAA ACGAAGACGA 181 GGCAATGGGA TTGACAATAT GGAGACTTCC GGGAGGTGGG TTCGCCGTAG GAAGATTTTC 241 CGGTGGAAGA AGAGGAGCTG AGAGAGAGCT TCCAGTAGTG TATACAGAAA TGGACGGTGG 301 ATTTAACAAT GGGGTACCTA GAAGAATAGC TTGGAGATCA AGAAGAAGCA ACACAGGTCG 361 AAAT Predicted gene structure (within gDNA segment 8600 to 7027): Exon 1 8000 7637 ( 364 n); cDNA 1 364 ( 364 n); score: 1.000 MATCH C06HBa0158P14.1-17- SGN-E204890+ 1.000 364 1.000 C PGS_C06HBa0158P14.1-17-_SGN-E204890+ (8000 7637) Alignment (genomic DNA sequence = upper lines): AGCTTTCGAT TTAGGATCTG AAGCTCGAGA AATGCCCTGT AAACACATCT ACCATTCCGA 7941 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCTTTCGAT TTAGGATCTG AAGCTCGAGA AATGCCCTGT AAACACATCT ACCATTCCGA 60 TTGTATCCTC CCATGGCTAT CTCTTCGAAA TTCGTGCCCC GTTTGCCGAC ACGAATTACC 7881 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGTATCCTC CCATGGCTAT CTCTTCGAAA TTCGTGCCCC GTTTGCCGAC ACGAATTACC 120 AACGGAATCA ACTGAAACTA CAAACTCCGA CAACATTTCT AGACCCAGAA ACGAAGACGA 7821 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACGGAATCA ACTGAAACTA CAAACTCCGA CAACATTTCT AGACCCAGAA ACGAAGACGA 180 GGCAATGGGA TTGACAATAT GGAGACTTCC GGGAGGTGGG TTCGCCGTAG GAAGATTTTC 7761 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGCAATGGGA TTGACAATAT GGAGACTTCC GGGAGGTGGG TTCGCCGTAG GAAGATTTTC 240 CGGTGGAAGA AGAGGAGCTG AGAGAGAGCT TCCAGTAGTG TATACAGAAA TGGACGGTGG 7701 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGGTGGAAGA AGAGGAGCTG AGAGAGAGCT TCCAGTAGTG TATACAGAAA TGGACGGTGG 300 ATTTAACAAT GGGGTACCTA GAAGAATAGC TTGGAGATCA AGAAGAAGCA ACACAGGTCG 7641 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTTAACAAT GGGGTACCTA GAAGAATAGC TTGGAGATCA AGAAGAAGCA ACACAGGTCG 360 AAAT 7637 |||| AAAT 364 hqPGS_C06HBa0158P14.1-17-_SGN-E204890+ (8000 7637) ******************************************************************************** EST sequence 30 +strand 728 n (File: SGN-E258359+) 1 TTGTCCTCAC TGTGATAGTG GATTTATAGA AGTTGCTGAG GGAAATATTG GGTCGCCGGA 61 ATCTCGCCGG AGGTTTCCCA TGTGGAACGA ACGGCCAGAG TCAGATCGGA GTGTGAACAT 121 GGGTTCTCGA CGGAGCAGGC GTAATCGGGG TGATAGATCT CCGTTTAATC CGGTTATTGT 181 TCTTCGTAGT CCATCTGAAG CACCTGGGGA GGATGAAGCT GCTGCAGCTG CAGAGGAGCG 241 GAGTTATGAG CTTTATTATG ATGATGGTGA AGGTTCAGGT CTCAGGCCGT TGCCGCCGAC 301 GATGTCGGAG TTTTTGATGG GATCTGGGTT TGATCGGTTA CTTGATCAGT TAGCACAGAT 361 CGAGGTGAAC GGTTTTGGTC GCCCGGAAAA TCCACCGGCG TCGAAATCAG CGATTGAGTC 421 GATGCCGATT ATTCAAATAG CTTCAAATCA CGTAAATTCC GAGACCCATT GCGCTGTTTG 481 TAAAGAAGCT TTCGATTTAG GATCTGAAGC TCGAGAAATG CCCTGTAAAC ACATCTACCA 541 TTCCGATTGT ATCCTCCCAT GGCTATCTCT TCGAAATTCG TGCCCCGTTT GCCGACACGA 601 ATTACCAACG GAATCAACTG AAACTACAAA CTCCGACAAC ATTTCTAGAC CCAGAAACGA 661 AGACGAGGCA ATGGGATTGA CAATATGGAG ACTTCCGGGG AGTGGGTTCG CCGTAGGAAG 721 ATTTTCCG Predicted gene structure (within gDNA segment 9086 to 7149): Exon 1 8486 7759 ( 728 n); cDNA 1 728 ( 728 n); score: 0.997 MATCH C06HBa0158P14.1-17- SGN-E258359+ 0.997 728 1.000 C PGS_C06HBa0158P14.1-17-_SGN-E258359+ (8486 7759) Alignment (genomic DNA sequence = upper lines): TTGTCCTCAC TGTGATAGTG GATTTATAGA AGTTGCTGAG GGAAATATTG GGTCGCCGGA 8427 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGTCCTCAC TGTGATAGTG GATTTATAGA AGTTGCTGAG GGAAATATTG GGTCGCCGGA 60 ATCTCGCCGG AGGTTTCCCA TGTGGAACGA ACGGCCAGAG TCAGATCGGA GTGTGAACAT 8367 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCTCGCCGG AGGTTTCCCA TGTGGAACGA ACGGCCAGAG TCAGATCGGA GTGTGAACAT 120 GGGTTCTCGA CGGAGCAGGC GTAATCGGGG TGATAGATCT CCGTTTAATC CGGTTATTGT 8307 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGGTTCTCGA CGGAGCAGGC GTAATCGGGG TGATAGATCT CCGTTTAATC CGGTTATTGT 180 TCTTCGTAGT CCATCTGAAG CACCTGGGGA GGATGAAGCT GCTGCAGCTG CAGAGGAGCG 8247 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTTCGTAGT CCATCTGAAG CACCTGGGGA GGATGAAGCT GCTGCAGCTG CAGAGGAGCG 240 GAGTTATGAG CTTTATTATG ATGATGGTGA AGGTTCAGGT CTCAGGCCGT TGCCGCCGAC 8187 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGTTATGAG CTTTATTATG ATGATGGTGA AGGTTCAGGT CTCAGGCCGT TGCCGCCGAC 300 GATGTCGGAG TTTTTGATGG GATCTGGGTT TGATCGGTTA CTTGATCAGT TAGCACAGAT 8127 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATGTCGGAG TTTTTGATGG GATCTGGGTT TGATCGGTTA CTTGATCAGT TAGCACAGAT 360 CGAGGTGAAC GGTTTTGGTC GCCCGGAAAA TCCACCGGCG TCGAAATCAG CGATTGAGTC 8067 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGAGGTGAAC GGTTTTGGTC GCCCGGAAAA TCCACCGGCG TCGAAATCAG CGATTGAGTC 420 GATGCCGATT ATTCAAATAG CTTCAAATCA CGTAAATTCC GAGACCCATT GCGCTGTTTG 8007 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATGCCGATT ATTCAAATAG CTTCAAATCA CGTAAATTCC GAGACCCATT GCGCTGTTTG 480 TAAAGAAGCT TTCGATTTAG GATCTGAAGC TCGAGAAATG CCCTGTAAAC ACATCTACCA 7947 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAAAGAAGCT TTCGATTTAG GATCTGAAGC TCGAGAAATG CCCTGTAAAC ACATCTACCA 540 TTCCGATTGT ATCCTCCCAT GGCTATCTCT TCGAAATTCG TGCCCCGTTT GCCGACACGA 7887 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTCCGATTGT ATCCTCCCAT GGCTATCTCT TCGAAATTCG TGCCCCGTTT GCCGACACGA 600 ATTACCAACG GAATCAACTG AAACTACAAA CTCCGACAAC ATTTCTAGAC CCAGAAACGA 7827 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTACCAACG GAATCAACTG AAACTACAAA CTCCGACAAC ATTTCTAGAC CCAGAAACGA 660 AGACGAGGCA ATGGGATTGA CAATATGGAG ACTTCCGGGA GGTGGGTTCG CCGTAGGAAG 7767 |||||||||| |||||||||| |||||||||| ||||||||| ||||||||| |||||||||| AGACGAGGCA ATGGGATTGA CAATATGGAG ACTTCCGGGG AGTGGGTTCG CCGTAGGAAG 720 ATTTTCCG 7759 |||||||| ATTTTCCG 728 hqPGS_C06HBa0158P14.1-17-_SGN-E258359+ (8486 7759) ******************************************************************************** EST sequence 25 +strand 528 n (File: SGN-E206896+) 1 TTAATCCGGT TATTGTTCTT CGTAGTCCAT CTGAAGCACC TGGGGAGGAT GAAGCTGCTG 61 CAGCTGCAGA GGAGCGGAGT TATGAGCTTT ATTATGATGA TGGTGAAGGT TCAGGTCTCA 121 GGCCGTTGCC GCCGACGATG TCGGAGTTTT TGATGGGATC TGGGTTTGAT CGGTTACTTG 181 ATCAGTTAGC ACAGATCGAG GTGAACGGTT TTGGTCGCCC GGAAAATCCA CCGGCGTCGA 241 AATCAGCGAT TGAGTCGATG CCGATTATTC AAATAGCTTC AAATCACGTA AATTCCGAGA 301 CCCATTGCGC TGTTTGTAAA GAAGCTTTCG ATTTAGGATC TGAAGCTCGA GAAATGCCCT 361 GTAAACACAT CTACCATTCC GATTGTATCC TCCCATGGCT ATCTCTTCGA AATTCGTGCC 421 CCGTTTGCCG ACACGAATTA CCAACGGAAT CAACTGAAAC TACAAACTCC GACAACATTT 481 CTAGACCCAG AAACGAAGAC GAGGCAATGG GATTGACAAT ATGGAGAC Predicted gene structure (within gDNA segment 8922 to 7185): Exon 1 8322 7795 ( 528 n); cDNA 1 528 ( 528 n); score: 1.000 MATCH C06HBa0158P14.1-17- SGN-E206896+ 1.000 528 1.000 C PGS_C06HBa0158P14.1-17-_SGN-E206896+ (8322 7795) Alignment (genomic DNA sequence = upper lines): TTAATCCGGT TATTGTTCTT CGTAGTCCAT CTGAAGCACC TGGGGAGGAT GAAGCTGCTG 8263 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTAATCCGGT TATTGTTCTT CGTAGTCCAT CTGAAGCACC TGGGGAGGAT GAAGCTGCTG 60 CAGCTGCAGA GGAGCGGAGT TATGAGCTTT ATTATGATGA TGGTGAAGGT TCAGGTCTCA 8203 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAGCTGCAGA GGAGCGGAGT TATGAGCTTT ATTATGATGA TGGTGAAGGT TCAGGTCTCA 120 GGCCGTTGCC GCCGACGATG TCGGAGTTTT TGATGGGATC TGGGTTTGAT CGGTTACTTG 8143 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGCCGTTGCC GCCGACGATG TCGGAGTTTT TGATGGGATC TGGGTTTGAT CGGTTACTTG 180 ATCAGTTAGC ACAGATCGAG GTGAACGGTT TTGGTCGCCC GGAAAATCCA CCGGCGTCGA 8083 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCAGTTAGC ACAGATCGAG GTGAACGGTT TTGGTCGCCC GGAAAATCCA CCGGCGTCGA 240 AATCAGCGAT TGAGTCGATG CCGATTATTC AAATAGCTTC AAATCACGTA AATTCCGAGA 8023 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATCAGCGAT TGAGTCGATG CCGATTATTC AAATAGCTTC AAATCACGTA AATTCCGAGA 300 CCCATTGCGC TGTTTGTAAA GAAGCTTTCG ATTTAGGATC TGAAGCTCGA GAAATGCCCT 7963 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCCATTGCGC TGTTTGTAAA GAAGCTTTCG ATTTAGGATC TGAAGCTCGA GAAATGCCCT 360 GTAAACACAT CTACCATTCC GATTGTATCC TCCCATGGCT ATCTCTTCGA AATTCGTGCC 7903 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTAAACACAT CTACCATTCC GATTGTATCC TCCCATGGCT ATCTCTTCGA AATTCGTGCC 420 CCGTTTGCCG ACACGAATTA CCAACGGAAT CAACTGAAAC TACAAACTCC GACAACATTT 7843 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCGTTTGCCG ACACGAATTA CCAACGGAAT CAACTGAAAC TACAAACTCC GACAACATTT 480 CTAGACCCAG AAACGAAGAC GAGGCAATGG GATTGACAAT ATGGAGAC 7795 |||||||||| |||||||||| |||||||||| |||||||||| |||||||| CTAGACCCAG AAACGAAGAC GAGGCAATGG GATTGACAAT ATGGAGAC 528 hqPGS_C06HBa0158P14.1-17-_SGN-E206896+ (8322 7795) ******************************************************************************** EST sequence 15 +strand 511 n (File: SGN-E205039+) 1 GTAATCTGTG TGATAGATCT CCGTTTAATC CGGTTATTGT TCTGCGTAGT CCATCTGAAG 61 CACCGGGGGA GGATGAAGCT GCTGCAGCTG CAGAGGAGCG GAGTTATGAG CTTTATTATG 121 ATGATGGTGA AGGTTCAGGT CTCAGGCCGT TGCCGCCGAC GATGTCGGAG TTTTTGATGG 181 GATCTGGGTT TGATCGGTTA CTTGATCAGT TAGCACAGAT CGAGGTGAAC GGTTTTGGTC 241 GCCCGGAAAA TCCACCGGCG TCGAAATCAG CGATTGAGTC GATGCCGATT ATTCAAATAG 301 CTTCAAATCA CGTAAATTCC GAGACCCATT GCGCTGTTTG TAAAGAAGCT TTCGATTTAG 361 GATCTGAAGC TCGAGAAATG CCCTGTAAAC ACATCTACCA TTCCGATTGT ATCCTCCCAT 421 GGCTATCTCT TCGAAATTCG TGCCCCGTTT GCCGACACGA ATTACCAACG GAATCAACTG 481 AAACTACAAA CTCCGACAAC ATTTCTAGAC C Predicted gene structure (within gDNA segment 9027 to 7226): Exon 1 8346 7836 ( 511 n); cDNA 1 511 ( 511 n); score: 0.992 MATCH C06HBa0158P14.1-17- SGN-E205039+ 0.992 511 1.000 C PGS_C06HBa0158P14.1-17-_SGN-E205039+ (8346 7836) Alignment (genomic DNA sequence = upper lines): GTAATCGGGG TGATAGATCT CCGTTTAATC CGGTTATTGT TCTTCGTAGT CCATCTGAAG 8287 |||||| | | |||||||||| |||||||||| |||||||||| ||| |||||| |||||||||| GTAATCTGTG TGATAGATCT CCGTTTAATC CGGTTATTGT TCTGCGTAGT CCATCTGAAG 60 CACCTGGGGA GGATGAAGCT GCTGCAGCTG CAGAGGAGCG GAGTTATGAG CTTTATTATG 8227 |||| ||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CACCGGGGGA GGATGAAGCT GCTGCAGCTG CAGAGGAGCG GAGTTATGAG CTTTATTATG 120 ATGATGGTGA AGGTTCAGGT CTCAGGCCGT TGCCGCCGAC GATGTCGGAG TTTTTGATGG 8167 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGATGGTGA AGGTTCAGGT CTCAGGCCGT TGCCGCCGAC GATGTCGGAG TTTTTGATGG 180 GATCTGGGTT TGATCGGTTA CTTGATCAGT TAGCACAGAT CGAGGTGAAC GGTTTTGGTC 8107 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATCTGGGTT TGATCGGTTA CTTGATCAGT TAGCACAGAT CGAGGTGAAC GGTTTTGGTC 240 GCCCGGAAAA TCCACCGGCG TCGAAATCAG CGATTGAGTC GATGCCGATT ATTCAAATAG 8047 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCCCGGAAAA TCCACCGGCG TCGAAATCAG CGATTGAGTC GATGCCGATT ATTCAAATAG 300 CTTCAAATCA CGTAAATTCC GAGACCCATT GCGCTGTTTG TAAAGAAGCT TTCGATTTAG 7987 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTCAAATCA CGTAAATTCC GAGACCCATT GCGCTGTTTG TAAAGAAGCT TTCGATTTAG 360 GATCTGAAGC TCGAGAAATG CCCTGTAAAC ACATCTACCA TTCCGATTGT ATCCTCCCAT 7927 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATCTGAAGC TCGAGAAATG CCCTGTAAAC ACATCTACCA TTCCGATTGT ATCCTCCCAT 420 GGCTATCTCT TCGAAATTCG TGCCCCGTTT GCCGACACGA ATTACCAACG GAATCAACTG 7867 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGCTATCTCT TCGAAATTCG TGCCCCGTTT GCCGACACGA ATTACCAACG GAATCAACTG 480 AAACTACAAA CTCCGACAAC ATTTCTAGAC C 7836 |||||||||| |||||||||| |||||||||| | AAACTACAAA CTCCGACAAC ATTTCTAGAC C 511 hqPGS_C06HBa0158P14.1-17-_SGN-E205039+ (8346 7836) ******************************************************************************** EST sequence 28 +strand 737 n (File: SGN-E334125+) 1 TTTATTGGGT TGAGTTTTGA CTGATCTCCG GCGACTGCAG ATGTCTTCGT ACTGGTGTTA 61 TCGGTGTACA AGGTTTGTTA GAATTTCAGT TGGAAACGAT GTTGTTTGTC CTCACTGTGA 121 TAGTGGATTT ATAGAAGTTG CTGAGGGAAA TATTGGGTCG CCGGAATCTC GCCGGAGGTT 181 TCCCATGTGG AACGAACGGC CAGAGTCAGA TCGGAGTGTG AACATGGGTT CTCGACGGAG 241 CAGGCGTAAT CGGGGTGATA GATCTCCGTT TAATCCGGTT ATTGTTCTTC GTAGTCCATC 301 TGAAGCACCT GGGGAGGATG AAGCTGCTGC AGCTGCAGAG GAGCGGAGTT ATGAGCTTTA 361 TTATGATGAT GGTGAAGGTT CAGGTCTCAG GCCGTTGCCG CCGACGATGT CGGAGTTTTT 421 GATGGGATCT GGGTTTGATC GGTTACTTGA TCAGTTAGCA CAGATCGAGG TGAACGGTTT 481 TGGTCGCCCG GAAAATCCAC CGGCGTCGAA ATCAGCGATT GAGTCGATGC CGATTATTCA 541 AATAGCTTCA AATCACGTAA ATTCCGAGAC CCATTGCGCT GTTTGTAAAG AAGCTTTCGA 601 TTTAGGATCT GAAGCTCGAG AAATGCCCCT GTAACACATC TACCATTCCG ATTGTATCCC 661 TCCATGGCTA TCTCTTCGAA ATTCGTGCCC CGTTTGCCGA CACGAATTAC AACGGGAATC 721 ACTGAAACTA CAAACTC Predicted gene structure (within gDNA segment 9191 to 7244): Exon 1 8591 7854 ( 738 n); cDNA 1 737 ( 737 n); score: 0.987 MATCH C06HBa0158P14.1-17- SGN-E334125+ 0.987 738 1.001 C PGS_C06HBa0158P14.1-17-_SGN-E334125+ (8591 7854) Alignment (genomic DNA sequence = upper lines): TTTATTGGGT TGAGTTTTGA CTGATCTCCG GCGACTGCAG ATGTCTTCGT ACTGGTGTTA 8532 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTATTGGGT TGAGTTTTGA CTGATCTCCG GCGACTGCAG ATGTCTTCGT ACTGGTGTTA 60 TCGGTGTACA AGGTTTGTTA GAATTTCAGT TGGAAACGAT GTTGTTTGTC CTCACTGTGA 8472 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCGGTGTACA AGGTTTGTTA GAATTTCAGT TGGAAACGAT GTTGTTTGTC CTCACTGTGA 120 TAGTGGATTT ATAGAAGTTG CTGAGGGAAA TATTGGGTCG CCGGAATCTC GCCGGAGGTT 8412 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAGTGGATTT ATAGAAGTTG CTGAGGGAAA TATTGGGTCG CCGGAATCTC GCCGGAGGTT 180 TCCCATGTGG AACGAACGGC CAGAGTCAGA TCGGAGTGTG AACATGGGTT CTCGACGGAG 8352 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCCCATGTGG AACGAACGGC CAGAGTCAGA TCGGAGTGTG AACATGGGTT CTCGACGGAG 240 CAGGCGTAAT CGGGGTGATA GATCTCCGTT TAATCCGGTT ATTGTTCTTC GTAGTCCATC 8292 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAGGCGTAAT CGGGGTGATA GATCTCCGTT TAATCCGGTT ATTGTTCTTC GTAGTCCATC 300 TGAAGCACCT GGGGAGGATG AAGCTGCTGC AGCTGCAGAG GAGCGGAGTT ATGAGCTTTA 8232 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAAGCACCT GGGGAGGATG AAGCTGCTGC AGCTGCAGAG GAGCGGAGTT ATGAGCTTTA 360 TTATGATGAT GGTGAAGGTT CAGGTCTCAG GCCGTTGCCG CCGACGATGT CGGAGTTTTT 8172 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTATGATGAT GGTGAAGGTT CAGGTCTCAG GCCGTTGCCG CCGACGATGT CGGAGTTTTT 420 GATGGGATCT GGGTTTGATC GGTTACTTGA TCAGTTAGCA CAGATCGAGG TGAACGGTTT 8112 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATGGGATCT GGGTTTGATC GGTTACTTGA TCAGTTAGCA CAGATCGAGG TGAACGGTTT 480 TGGTCGCCCG GAAAATCCAC CGGCGTCGAA ATCAGCGATT GAGTCGATGC CGATTATTCA 8052 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGTCGCCCG GAAAATCCAC CGGCGTCGAA ATCAGCGATT GAGTCGATGC CGATTATTCA 540 AATAGCTTCA AATCACGTAA ATTCCGAGAC CCATTGCGCT GTTTGTAAAG AAGCTTTCGA 7992 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATAGCTTCA AATCACGTAA ATTCCGAGAC CCATTGCGCT GTTTGTAAAG AAGCTTTCGA 600 TTTAGGATCT GAAGCTCGAG AAATG-CCCT GTAAACACAT CTACCATTCC GATTGTATCC 7933 |||||||||| |||||||||| ||||| |||| || ||||||| |||||||||| |||||||||| TTTAGGATCT GAAGCTCGAG AAATGCCCCT GT-AACACAT CTACCATTCC GATTGTATCC 659 TCCCATGGCT ATCTCTTCGA AATTCGTGCC CCGTTTGCCG ACACGAATTA CCAACGGAAT 7873 |||||||| |||||||||| |||||||||| |||||||||| |||||||||| | | ||||| CTCCATGGCT ATCTCTTCGA AATTCGTGCC CCGTTTGCCG ACACGAATTA CAACGGGAAT 719 CAACTGAAAC TACAAACTC 7854 | |||||||| ||||||||| C-ACTGAAAC TACAAACTC 737 hqPGS_C06HBa0158P14.1-17-_SGN-E334125+ (8591 7854) ******************************************************************************** EST sequence 6 +strand 686 n (File: SGN-E336061+) 1 GCGACTGCAG ATGTCTTCGT ACTGGTGTTA TCGGTGTACA AGGTTTGTTA GAATTTCAGT 61 TGGAAACGAT GTTGTTTGTC CTCACTGTGA TAGTGGATTT ATAGAAGTTG CTGAGGGAAA 121 TATTGGGTCG CCGGAATCTC GCCGGAGGTT TCCCATGTGG AACGAACGGC CAGAGTCAGA 181 TCGGAGTGTG AACATGGGTT CTCGACGGAG CAGGCGTAAT CGGGGTGATA GATCTCCGTT 241 TAATCCGGTT ATTGTTCTTC GTAGTCCATC TGAAGCACCT GGGGAGGATG AAGCTGCTGC 301 AGCTGCAGAG GAGCGGAGTT ATGAGCTTTA TTATGATGAT GGTGAAGGTT CACGTCTCAG 361 GCCGTTGCCG CCGACGATGT CGGAGTTTTT GATGGGATCT GGGTTTGATC GGTTACTTGA 421 TCAGTTAGCA CAGATCGAGG TGAACGGTTT TGGTCGCCCG GAAAATCCAC CGGCGTCGAA 481 ATCAGCGATT GAGTCGATGC CGATTATTCA AATAGCTTCA AATCACGTAA ATTCCGAGAC 541 CCATTGCGCT GTTTGTAAAG AAGCTTTCGA TTTAGGATCT GAAGCTCGAG AAATGCCCTG 601 TAAACACATC TACCATTCCG ATTGTATCCT CCCATGGCTA TCTCTTCGAA ATTCGTGCCC 661 CGTTTGCCGA CACGAATTAC CAACGG Predicted gene structure (within gDNA segment 9161 to 7266): Exon 1 8561 7876 ( 686 n); cDNA 1 686 ( 686 n); score: 0.999 MATCH C06HBa0158P14.1-17- SGN-E336061+ 0.999 686 1.000 C PGS_C06HBa0158P14.1-17-_SGN-E336061+ (8561 7876) Alignment (genomic DNA sequence = upper lines): GCGACTGCAG ATGTCTTCGT ACTGGTGTTA TCGGTGTACA AGGTTTGTTA GAATTTCAGT 8502 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCGACTGCAG ATGTCTTCGT ACTGGTGTTA TCGGTGTACA AGGTTTGTTA GAATTTCAGT 60 TGGAAACGAT GTTGTTTGTC CTCACTGTGA TAGTGGATTT ATAGAAGTTG CTGAGGGAAA 8442 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGAAACGAT GTTGTTTGTC CTCACTGTGA TAGTGGATTT ATAGAAGTTG CTGAGGGAAA 120 TATTGGGTCG CCGGAATCTC GCCGGAGGTT TCCCATGTGG AACGAACGGC CAGAGTCAGA 8382 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TATTGGGTCG CCGGAATCTC GCCGGAGGTT TCCCATGTGG AACGAACGGC CAGAGTCAGA 180 TCGGAGTGTG AACATGGGTT CTCGACGGAG CAGGCGTAAT CGGGGTGATA GATCTCCGTT 8322 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCGGAGTGTG AACATGGGTT CTCGACGGAG CAGGCGTAAT CGGGGTGATA GATCTCCGTT 240 TAATCCGGTT ATTGTTCTTC GTAGTCCATC TGAAGCACCT GGGGAGGATG AAGCTGCTGC 8262 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAATCCGGTT ATTGTTCTTC GTAGTCCATC TGAAGCACCT GGGGAGGATG AAGCTGCTGC 300 AGCTGCAGAG GAGCGGAGTT ATGAGCTTTA TTATGATGAT GGTGAAGGTT CAGGTCTCAG 8202 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| || ||||||| AGCTGCAGAG GAGCGGAGTT ATGAGCTTTA TTATGATGAT GGTGAAGGTT CACGTCTCAG 360 GCCGTTGCCG CCGACGATGT CGGAGTTTTT GATGGGATCT GGGTTTGATC GGTTACTTGA 8142 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCCGTTGCCG CCGACGATGT CGGAGTTTTT GATGGGATCT GGGTTTGATC GGTTACTTGA 420 TCAGTTAGCA CAGATCGAGG TGAACGGTTT TGGTCGCCCG GAAAATCCAC CGGCGTCGAA 8082 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCAGTTAGCA CAGATCGAGG TGAACGGTTT TGGTCGCCCG GAAAATCCAC CGGCGTCGAA 480 ATCAGCGATT GAGTCGATGC CGATTATTCA AATAGCTTCA AATCACGTAA ATTCCGAGAC 8022 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCAGCGATT GAGTCGATGC CGATTATTCA AATAGCTTCA AATCACGTAA ATTCCGAGAC 540 CCATTGCGCT GTTTGTAAAG AAGCTTTCGA TTTAGGATCT GAAGCTCGAG AAATGCCCTG 7962 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCATTGCGCT GTTTGTAAAG AAGCTTTCGA TTTAGGATCT GAAGCTCGAG AAATGCCCTG 600 TAAACACATC TACCATTCCG ATTGTATCCT CCCATGGCTA TCTCTTCGAA ATTCGTGCCC 7902 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAAACACATC TACCATTCCG ATTGTATCCT CCCATGGCTA TCTCTTCGAA ATTCGTGCCC 660 CGTTTGCCGA CACGAATTAC CAACGG 7876 |||||||||| |||||||||| |||||| CGTTTGCCGA CACGAATTAC CAACGG 686 hqPGS_C06HBa0158P14.1-17-_SGN-E336061+ (8561 7876) ******************************************************************************** EST sequence 5 +strand 430 n (File: SGN-E210905+) 1 TTTATAGAAG TTGCTGAGGG AAATATTGGG TCGCCGGAAT CTCGCCGGAG GTTTCCCATG 61 TGGAACGAAC GGCCAGAGTC AGATCGGAGT GTGAACATGG GTTCTCGACG GAGCAGGCGT 121 AATCGGGGTG ATAGATCTCC GTTTAATCCG GTTATTGTTC TTCGTAGTCC ATCTGAAGCA 181 CCTGGGGAGG ATGAAGCTGC TGCAGCTGCA GAGGAGCGGA GTTATGAGCT TTATTATGAT 241 GATGGTGAAG GTTCAGGTCT CAGGCCGTTG CCGCCGACGA TGTCGGAGTT TTTGATGGGA 301 TCTGGGTTTG ATCGGTTACT TGATCAGTTA GCACAGATCG AGGTGAACGG TTTTGGTCGC 361 CCGGAAAATC CACCGGCGTC GAAATCAGCG ATTGAGTCGA TGCCGATTAT TCAAATAGCT 421 TCAAATCACG Predicted gene structure (within gDNA segment 9064 to 7425): Exon 1 8464 8035 ( 430 n); cDNA 1 430 ( 430 n); score: 1.000 MATCH C06HBa0158P14.1-17- SGN-E210905+ 1.000 430 1.000 C PGS_C06HBa0158P14.1-17-_SGN-E210905+ (8464 8035) Alignment (genomic DNA sequence = upper lines): TTTATAGAAG TTGCTGAGGG AAATATTGGG TCGCCGGAAT CTCGCCGGAG GTTTCCCATG 8405 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTATAGAAG TTGCTGAGGG AAATATTGGG TCGCCGGAAT CTCGCCGGAG GTTTCCCATG 60 TGGAACGAAC GGCCAGAGTC AGATCGGAGT GTGAACATGG GTTCTCGACG GAGCAGGCGT 8345 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGAACGAAC GGCCAGAGTC AGATCGGAGT GTGAACATGG GTTCTCGACG GAGCAGGCGT 120 AATCGGGGTG ATAGATCTCC GTTTAATCCG GTTATTGTTC TTCGTAGTCC ATCTGAAGCA 8285 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AATCGGGGTG ATAGATCTCC GTTTAATCCG GTTATTGTTC TTCGTAGTCC ATCTGAAGCA 180 CCTGGGGAGG ATGAAGCTGC TGCAGCTGCA GAGGAGCGGA GTTATGAGCT TTATTATGAT 8225 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCTGGGGAGG ATGAAGCTGC TGCAGCTGCA GAGGAGCGGA GTTATGAGCT TTATTATGAT 240 GATGGTGAAG GTTCAGGTCT CAGGCCGTTG CCGCCGACGA TGTCGGAGTT TTTGATGGGA 8165 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATGGTGAAG GTTCAGGTCT CAGGCCGTTG CCGCCGACGA TGTCGGAGTT TTTGATGGGA 300 TCTGGGTTTG ATCGGTTACT TGATCAGTTA GCACAGATCG AGGTGAACGG TTTTGGTCGC 8105 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTGGGTTTG ATCGGTTACT TGATCAGTTA GCACAGATCG AGGTGAACGG TTTTGGTCGC 360 CCGGAAAATC CACCGGCGTC GAAATCAGCG ATTGAGTCGA TGCCGATTAT TCAAATAGCT 8045 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCGGAAAATC CACCGGCGTC GAAATCAGCG ATTGAGTCGA TGCCGATTAT TCAAATAGCT 420 TCAAATCACG 8035 |||||||||| TCAAATCACG 430 hqPGS_C06HBa0158P14.1-17-_SGN-E210905+ (8464 8035) ******************************************************************************** EST sequence 19 +strand 481 n (File: SGN-E297776+) 1 GTGTACAAGG TTTGTTAGAA TTTCAGTTGG AAACGATGTT GTTTGTCCTC ACTGTGATAG 61 TGGATTTATA GAAGTTGCTG AGGGAAATAT TGGGTCGCCG GAATCTCGCC GGAGGTTTCC 121 CATGTGGAAC GAACGGCCAG AGTCAGATCG GAGTGTGAAC ATGGGTTCTC GACGGAGCAG 181 GCGTAATCGG GGTGATAGAT CTCCGTTTAA TCCGGTTATT GTTCTTCGTA GTCCATCTGA 241 AGCACCTGGG GAGGATGAAG CTGCTGCAGC TGCAGAGGAG CGGAGTTATG AGCTTTATTA 301 TGATGATGGT GAAGGTTCAG GTCTCAGGCC GTTGCCGCCG ACGATGTCGG AGTTTTTGAT 361 GGGATCTGGG TTTGATCGGT TACTTGATCA GTTAGCACAG ATCGAGGTGA ACGGTTTTGG 421 TCGCCCGGAA AATCCACCGG CGTCGAAATC AGCGATTGAG TCGATGCCGA TTATTCAAAT 481 A Predicted gene structure (within gDNA segment 9128 to 7438): Exon 1 8528 8048 ( 481 n); cDNA 1 481 ( 481 n); score: 1.000 MATCH C06HBa0158P14.1-17- SGN-E297776+ 1.000 481 1.000 C PGS_C06HBa0158P14.1-17-_SGN-E297776+ (8528 8048) Alignment (genomic DNA sequence = upper lines): GTGTACAAGG TTTGTTAGAA TTTCAGTTGG AAACGATGTT GTTTGTCCTC ACTGTGATAG 8469 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGTACAAGG TTTGTTAGAA TTTCAGTTGG AAACGATGTT GTTTGTCCTC ACTGTGATAG 60 TGGATTTATA GAAGTTGCTG AGGGAAATAT TGGGTCGCCG GAATCTCGCC GGAGGTTTCC 8409 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGATTTATA GAAGTTGCTG AGGGAAATAT TGGGTCGCCG GAATCTCGCC GGAGGTTTCC 120 CATGTGGAAC GAACGGCCAG AGTCAGATCG GAGTGTGAAC ATGGGTTCTC GACGGAGCAG 8349 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATGTGGAAC GAACGGCCAG AGTCAGATCG GAGTGTGAAC ATGGGTTCTC GACGGAGCAG 180 GCGTAATCGG GGTGATAGAT CTCCGTTTAA TCCGGTTATT GTTCTTCGTA GTCCATCTGA 8289 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCGTAATCGG GGTGATAGAT CTCCGTTTAA TCCGGTTATT GTTCTTCGTA GTCCATCTGA 240 AGCACCTGGG GAGGATGAAG CTGCTGCAGC TGCAGAGGAG CGGAGTTATG AGCTTTATTA 8229 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGCACCTGGG GAGGATGAAG CTGCTGCAGC TGCAGAGGAG CGGAGTTATG AGCTTTATTA 300 TGATGATGGT GAAGGTTCAG GTCTCAGGCC GTTGCCGCCG ACGATGTCGG AGTTTTTGAT 8169 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGATGATGGT GAAGGTTCAG GTCTCAGGCC GTTGCCGCCG ACGATGTCGG AGTTTTTGAT 360 GGGATCTGGG TTTGATCGGT TACTTGATCA GTTAGCACAG ATCGAGGTGA ACGGTTTTGG 8109 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGGATCTGGG TTTGATCGGT TACTTGATCA GTTAGCACAG ATCGAGGTGA ACGGTTTTGG 420 TCGCCCGGAA AATCCACCGG CGTCGAAATC AGCGATTGAG TCGATGCCGA TTATTCAAAT 8049 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCGCCCGGAA AATCCACCGG CGTCGAAATC AGCGATTGAG TCGATGCCGA TTATTCAAAT 480 A 8048 | A 481 hqPGS_C06HBa0158P14.1-17-_SGN-E297776+ (8528 8048) ******************************************************************************** EST sequence 21 +strand 601 n (File: SGN-E271916+) 1 CATTTTCTTC TCTCTGTGCT TTTTCTTTTT TTCTCTTAAG AAACCTTTTT TATATTCTCC 61 GGCGAGCCAA ATCGGAGCAT AATTTGGGGG TTTTGAGTTA TTGGATCTAA CCGGGTTTAT 121 TGGGTTGAGT TTTGACTGAT CTCCGGCGAC TGCAGATGTC TTCGTACTGG TGTTATCGGT 181 GTACAAGGTT TGTTAGAATT TCAGTTGGAA ACGATGTTGT TTGTCCTCAC TGTGATAGTG 241 GATTTATAGA AGTTGCTGAG GGAAATATTG GGTCGCCGGA ATCTCGCCGG AAGTTTCCCA 301 TGTGGAACGA ACGGCCAGAG TCAGATCGGA GTGTGAACAT GGGTTCTCGA CGGAGCAGGC 361 GTAATCGGGG TGATAGATCT CCGTTTAATC CGGTTATTGT TCTTCGTAGT CCATCTGAAG 421 CACCTGGGGA GGATGAAGCT GCTGCAACTG CAGAGGAGCG GAGTTATGAG CTTTATTATG 481 ATGATGGTGA AGGTTCAAGT CTCAAGCCGT TGCCGCCGAC GATGTCGGAG TTTTTGATGG 541 GATCTGGGTT TGATCGGTTA CTTGATCAGT TAGCACAGAT CGAGGTGAAC GGTTTTGGTC 601 G Predicted gene structure (within gDNA segment 9306 to 7496): Exon 1 8706 8106 ( 601 n); cDNA 1 601 ( 601 n); score: 0.992 MATCH C06HBa0158P14.1-17- SGN-E271916+ 0.992 601 1.000 C PGS_C06HBa0158P14.1-17-_SGN-E271916+ (8706 8106) Alignment (genomic DNA sequence = upper lines): CATTTTCTTC TCTCTGTGCT TTTTCTTTTT TTCTCTTAGG AAACCTTTTT TATATTCTCC 8647 |||||||||| |||||||||| |||||||||| |||||||| | |||||||||| |||||||||| CATTTTCTTC TCTCTGTGCT TTTTCTTTTT TTCTCTTAAG AAACCTTTTT TATATTCTCC 60 GGCGAGCCAA ATCGGAGCAT AATTTGGGGG TTTTGAGTTA TTGGATCTAA CCGGGTTTAT 8587 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGCGAGCCAA ATCGGAGCAT AATTTGGGGG TTTTGAGTTA TTGGATCTAA CCGGGTTTAT 120 TGGGTTGAGT TTTGACTGAT CTCCGGCGAC TGCAGATGTC TTCGTACTGG TGTTATCGGT 8527 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGGGTTGAGT TTTGACTGAT CTCCGGCGAC TGCAGATGTC TTCGTACTGG TGTTATCGGT 180 GTACAAGGTT TGTTAGAATT TCAGTTGGAA ACGATGTTGT TTGTCCTCAC TGTGATAGTG 8467 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTACAAGGTT TGTTAGAATT TCAGTTGGAA ACGATGTTGT TTGTCCTCAC TGTGATAGTG 240 GATTTATAGA AGTTGCTGAG GGAAATATTG GGTCGCCGGA ATCTCGCCGG AGGTTTCCCA 8407 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| | |||||||| GATTTATAGA AGTTGCTGAG GGAAATATTG GGTCGCCGGA ATCTCGCCGG AAGTTTCCCA 300 TGTGGAACGA ACGGCCAGAG TCAGATCGGA GTGTGAACAT GGGTTCTCGA CGGAGCAGGC 8347 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGTGGAACGA ACGGCCAGAG TCAGATCGGA GTGTGAACAT GGGTTCTCGA CGGAGCAGGC 360 GTAATCGGGG TGATAGATCT CCGTTTAATC CGGTTATTGT TCTTCGTAGT CCATCTGAAG 8287 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTAATCGGGG TGATAGATCT CCGTTTAATC CGGTTATTGT TCTTCGTAGT CCATCTGAAG 420 CACCTGGGGA GGATGAAGCT GCTGCAGCTG CAGAGGAGCG GAGTTATGAG CTTTATTATG 8227 |||||||||| |||||||||| |||||| ||| |||||||||| |||||||||| |||||||||| CACCTGGGGA GGATGAAGCT GCTGCAACTG CAGAGGAGCG GAGTTATGAG CTTTATTATG 480 ATGATGGTGA AGGTTCAGGT CTCAGGCCGT TGCCGCCGAC GATGTCGGAG TTTTTGATGG 8167 |||||||||| ||||||| || |||| ||||| |||||||||| |||||||||| |||||||||| ATGATGGTGA AGGTTCAAGT CTCAAGCCGT TGCCGCCGAC GATGTCGGAG TTTTTGATGG 540 GATCTGGGTT TGATCGGTTA CTTGATCAGT TAGCACAGAT CGAGGTGAAC GGTTTTGGTC 8107 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATCTGGGTT TGATCGGTTA CTTGATCAGT TAGCACAGAT CGAGGTGAAC GGTTTTGGTC 600 G 8106 | G 601 hqPGS_C06HBa0158P14.1-17-_SGN-E271916+ (8706 8106) ******************************************************************************** EST sequence 17 +strand 570 n (File: SGN-E341510+) 1 CTTCTCTCTG TGCTTTTTCT TTTTTTCTCT TAGGAAACCT TTTTTATATT CTCCGGCGAG 61 CCAAATCGGA GCATAATTTG GGGGTTTTGA GTTATTGGAT CTAACCGGGT TTATTGGGTT 121 GAGTTTTGAC TGATCTCCGG CGACTGCAGA TGTCTTCGTA CTGGTGTTAT CGGTGTACAA 181 GGTTTGTTAG AATTTCAGTT GGAAACGATG TTGTTTGTCC TCACTGTGAT AGTGGATTTA 241 TAGAAGTTGC TGAGGGAAAT ATTGGGTCGC CGGAATCTCG CCGGAGGTTT CCCATGTGGA 301 ACGAACGGCC AGAGTCAGAT CGGAGTGTGA ACATGGGTTC TCGACGGAGC AGGCGTAATC 361 GGGGTGATAG ATCTCCGTTT AATCCGGTTA TTGTTCTTCG TAGTCCATCT GAAGCACCTG 421 GGGAGGATGA AGCTGCTGCA GCTGCAGAGG AGCGGAGTTA TGAGCTTTAT TATGATGATG 481 GTGAAGGTTC AGGTCTCAAG CCGTTGCCGC CGACGATGTC GGAGTTTTTG ATGGGATCTG 541 GGTTTGATCG GTTACTTGAT CAGTTAGCAC Predicted gene structure (within gDNA segment 9300 to 7521): Exon 1 8700 8131 ( 570 n); cDNA 1 570 ( 570 n); score: 0.998 MATCH C06HBa0158P14.1-17- SGN-E341510+ 0.998 570 1.000 C PGS_C06HBa0158P14.1-17-_SGN-E341510+ (8700 8131) Alignment (genomic DNA sequence = upper lines): CTTCTCTCTG TGCTTTTTCT TTTTTTCTCT TAGGAAACCT TTTTTATATT CTCCGGCGAG 8641 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTCTCTCTG TGCTTTTTCT TTTTTTCTCT TAGGAAACCT TTTTTATATT CTCCGGCGAG 60 CCAAATCGGA GCATAATTTG GGGGTTTTGA GTTATTGGAT CTAACCGGGT TTATTGGGTT 8581 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCAAATCGGA GCATAATTTG GGGGTTTTGA GTTATTGGAT CTAACCGGGT TTATTGGGTT 120 GAGTTTTGAC TGATCTCCGG CGACTGCAGA TGTCTTCGTA CTGGTGTTAT CGGTGTACAA 8521 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGTTTTGAC TGATCTCCGG CGACTGCAGA TGTCTTCGTA CTGGTGTTAT CGGTGTACAA 180 GGTTTGTTAG AATTTCAGTT GGAAACGATG TTGTTTGTCC TCACTGTGAT AGTGGATTTA 8461 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGTTTGTTAG AATTTCAGTT GGAAACGATG TTGTTTGTCC TCACTGTGAT AGTGGATTTA 240 TAGAAGTTGC TGAGGGAAAT ATTGGGTCGC CGGAATCTCG CCGGAGGTTT CCCATGTGGA 8401 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAGAAGTTGC TGAGGGAAAT ATTGGGTCGC CGGAATCTCG CCGGAGGTTT CCCATGTGGA 300 ACGAACGGCC AGAGTCAGAT CGGAGTGTGA ACATGGGTTC TCGACGGAGC AGGCGTAATC 8341 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACGAACGGCC AGAGTCAGAT CGGAGTGTGA ACATGGGTTC TCGACGGAGC AGGCGTAATC 360 GGGGTGATAG ATCTCCGTTT AATCCGGTTA TTGTTCTTCG TAGTCCATCT GAAGCACCTG 8281 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGGGTGATAG ATCTCCGTTT AATCCGGTTA TTGTTCTTCG TAGTCCATCT GAAGCACCTG 420 GGGAGGATGA AGCTGCTGCA GCTGCAGAGG AGCGGAGTTA TGAGCTTTAT TATGATGATG 8221 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGGAGGATGA AGCTGCTGCA GCTGCAGAGG AGCGGAGTTA TGAGCTTTAT TATGATGATG 480 GTGAAGGTTC AGGTCTCAGG CCGTTGCCGC CGACGATGTC GGAGTTTTTG ATGGGATCTG 8161 |||||||||| |||||||| | |||||||||| |||||||||| |||||||||| |||||||||| GTGAAGGTTC AGGTCTCAAG CCGTTGCCGC CGACGATGTC GGAGTTTTTG ATGGGATCTG 540 GGTTTGATCG GTTACTTGAT CAGTTAGCAC 8131 |||||||||| |||||||||| |||||||||| GGTTTGATCG GTTACTTGAT CAGTTAGCAC 570 hqPGS_C06HBa0158P14.1-17-_SGN-E341510+ (8700 8131) ******************************************************************************** EST sequence 18 +strand 619 n (File: SGN-E255400+) 1 TTAAATATAA AATAATTAAT TAACGATGAA ATAGTATTTA CCGCTTTACT AACAGGCTCC 61 CACGCGTCTT CGTGTTTATA AACTCTCTTT TTTCTCCTTT CTTCTTTACC TTTCACGTTC 121 TTCAACGCTA CCCCCATTTT CTTCTCTCTG TGCTTTTTCT TTTTTTTCTC TTAGGAAACC 181 TTTTTTATAT TCTCCGGCGA GCCAAATCGG AGCATAATTT GGGGGTTTTG AGTTATTGGA 241 TCTAACCGGG TTTATTGGGT TGAGTTTTGA CTGATCTCCG GCGACTGCAG ATGTCTTCGT 301 ACTGGTGTTA TCGGTGTACA AGGTTTGTTA GAATTTCAGT TGGAAACGAT GTTGTTTGTC 361 CTCACTGTGA TAGTGGATTT ATAGAAGTTG CTGAGGGAAA TATTGGGTCG CCGGAATCTC 421 GCCGGAGGTT TCCCATGTGG AACGAACGGC CAGAGTCAGA TCGGAGTGTG AACATGGGTT 481 CTCGACGGAG CAGGCGTAAT CGGGGTGATA GATCTCCGTT TAATCCGGTT ATTGTTCTTC 541 GTAGTCCATC TGAAGCACCT GGGGAGGATG AAGCTGCTGC AGCTGCAGAG GAGCGGAGTT 601 ATGAGCTTTA TTATGATGA Predicted gene structure (within gDNA segment 9512 to 7613): Exon 1 8840 8223 ( 618 n); cDNA 1 619 ( 619 n); score: 0.996 MATCH C06HBa0158P14.1-17- SGN-E255400+ 0.996 618 0.998 C PGS_C06HBa0158P14.1-17-_SGN-E255400+ (8840 8223) Alignment (genomic DNA sequence = upper lines): TTAAATATAA AATAATTAAT TAACGATGAA ATAGTATTTA CCGCTTTACT AACAGGCTCC 8781 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTAAATATAA AATAATTAAT TAACGATGAA ATAGTATTTA CCGCTTTACT AACAGGCTCC 60 CACGCGTCTT CGTGTTTATA AACTCTCTTT TTTCTCCTTT CTTCTTTACC TTTCACGTTC 8721 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CACGCGTCTT CGTGTTTATA AACTCTCTTT TTTCTCCTTT CTTCTTTACC TTTCACGTTC 120 TTCAACGCTA CCCCCATTTT CTTCTCTCTG TGCTTTTTC- TTTTTTTCTC TTAGGAAACC 8662 |||||||||| |||||||||| |||||||||| ||||||||| |||||||||| |||||||||| TTCAACGCTA CCCCCATTTT CTTCTCTCTG TGCTTTTTCT TTTTTTTCTC TTAGGAAACC 180 TTTTTTATAT TCTCCGGCGA GCCAAATCGG AGCATAATTT GGGGGTTTTG AGTTATTGGA 8602 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTTTTATAT TCTCCGGCGA GCCAAATCGG AGCATAATTT GGGGGTTTTG AGTTATTGGA 240 TCTAACCGGG TTTATTGGGT TGAGTTTTGA CTGATCTCCG GCGACTGCAG ATGTCTTCGT 8542 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCTAACCGGG TTTATTGGGT TGAGTTTTGA CTGATCTCCG GCGACTGCAG ATGTCTTCGT 300 ACTGGTGTTA TCGGTGTACA AGGTTTGTTA GAATTTCAGT TGGAAACGAT GTTGTTTGTC 8482 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACTGGTGTTA TCGGTGTACA AGGTTTGTTA GAATTTCAGT TGGAAACGAT GTTGTTTGTC 360 CTCACTGTGA TAGTGGATTT ATAGAAGTTG CTGAGGGAAA TATTGGGTCG CCGGAATCTC 8422 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCACTGTGA TAGTGGATTT ATAGAAGTTG CTGAGGGAAA TATTGGGTCG CCGGAATCTC 420 GCCGGAGGTT TCCCATGTGG AACGAACGGC CAGAGTCAGA TCGGAGTGTG AACATGGGTT 8362 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GCCGGAGGTT TCCCATGTGG AACGAACGGC CAGAGTCAGA TCGGAGTGTG AACATGGGTT 480 CTCGACGGAG CAGGCGTAAT CGGGGTGATA GATCTCCGTT TAATCCGGTT ATTGTTCTTC 8302 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTCGACGGAG CAGGCGTAAT CGGGGTGATA GATCTCCGTT TAATCCGGTT ATTGTTCTTC 540 GTAGTCCATC TGAAGCACCT GGGGAGGATG AAGCTGCTGC AGCTGCAGAG GAGCGGAGTT 8242 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTAGTCCATC TGAAGCACCT GGGGAGGATG AAGCTGCTGC AGCTGCAGAG GAGCGGAGTT 600 ATGAGCTTTA TTATGATGA 8223 |||||||||| ||||||||| ATGAGCTTTA TTATGATGA 619 hqPGS_C06HBa0158P14.1-17-_SGN-E255400+ (8840 8223) ******************************************************************************** EST sequence 20 +strand 360 n (File: SGN-E202184+) 1 CGCTACCCCC ATTTTCTTCT CTCTGTGCTT TTTCTTTTTT TCTCTTAGGA AACCTTTTTT 61 ATATTCTCCG GCGAGCCAAA TCGGAGCATA ATTTGGGGGT TTTGAGTTAT TGGATCTAAC 121 CGGGTTTATT GGGTTGAGTT TTGACTGATC TCCGGCGACT GCAGATGTCT TCGTACTGGT 181 GTTATCGGTG TACAAGGTTT GTTAGAATTT CAGTTGGAAA CGATGTTGTT TGTCCTCACT 241 GTGATAGTGG ATTTATAGAA GTTGCTGAGG GAAATATTGG GTCGCCGGAA TCTCGCCGGA 301 GGTTTCCCAT GTGGAACGAA CGGCCAGAGT CAGATCGGAG TGTGAACATG GGTTCTCGAC Predicted gene structure (within gDNA segment 9315 to 7746): Exon 1 8715 8356 ( 360 n); cDNA 1 360 ( 360 n); score: 1.000 MATCH C06HBa0158P14.1-17- SGN-E202184+ 1.000 360 1.000 C PGS_C06HBa0158P14.1-17-_SGN-E202184+ (8715 8356) Alignment (genomic DNA sequence = upper lines): CGCTACCCCC ATTTTCTTCT CTCTGTGCTT TTTCTTTTTT TCTCTTAGGA AACCTTTTTT 8656 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGCTACCCCC ATTTTCTTCT CTCTGTGCTT TTTCTTTTTT TCTCTTAGGA AACCTTTTTT 60 ATATTCTCCG GCGAGCCAAA TCGGAGCATA ATTTGGGGGT TTTGAGTTAT TGGATCTAAC 8596 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATATTCTCCG GCGAGCCAAA TCGGAGCATA ATTTGGGGGT TTTGAGTTAT TGGATCTAAC 120 CGGGTTTATT GGGTTGAGTT TTGACTGATC TCCGGCGACT GCAGATGTCT TCGTACTGGT 8536 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CGGGTTTATT GGGTTGAGTT TTGACTGATC TCCGGCGACT GCAGATGTCT TCGTACTGGT 180 GTTATCGGTG TACAAGGTTT GTTAGAATTT CAGTTGGAAA CGATGTTGTT TGTCCTCACT 8476 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTATCGGTG TACAAGGTTT GTTAGAATTT CAGTTGGAAA CGATGTTGTT TGTCCTCACT 240 GTGATAGTGG ATTTATAGAA GTTGCTGAGG GAAATATTGG GTCGCCGGAA TCTCGCCGGA 8416 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTGATAGTGG ATTTATAGAA GTTGCTGAGG GAAATATTGG GTCGCCGGAA TCTCGCCGGA 300 GGTTTCCCAT GTGGAACGAA CGGCCAGAGT CAGATCGGAG TGTGAACATG GGTTCTCGAC 8356 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GGTTTCCCAT GTGGAACGAA CGGCCAGAGT CAGATCGGAG TGTGAACATG GGTTCTCGAC 360 hqPGS_C06HBa0158P14.1-17-_SGN-E202184+ (8715 8356) ******************************************************************************** EST sequence 31 +strand 479 n (File: SGN-E258662+) 1 GTTTAAATAT AAAATAATTA ATTAACGATG AAATAGTATT TACCGCTTTA CTAACAGGCT 61 CCCACGCGTC TTCGTGTTTA TAAACTCTCT TTTTTCTCCT TTCTTCTTTA CCTTTCACGT 121 TCTTCAACGC TACCCCCATT TTCTTCTCTC TGTGCTTTTT CTTTTTTTTC TCTTAGGAAA 181 CCTTTTTTAT ATTCTCCGGC GAGCCAAATC GGAGCATAAT TTGGGGGTTT TGAGTTATTG 241 GATCTAACCG GGTTTATTGG GTTGAGTTTT GACTGATCTC CGGCGACTGC AGATGTCTTC 301 GTACTGGTGT TATCGGTGTA CAAGGTTTGT TAGAATTTCA GTTGGAAACG ATGTTGTTTG 361 TCCTCACTGT GATAGTGGAT TTATAGAAGT TGCTGAGGGA AATATTGGGG CGCCGGAATC 421 TCGCCGGAGG TTTCCCATGT GGAACGAACG GCCAGAGTCA GATCGGAGTG TGAACATGG Predicted gene structure (within gDNA segment 9532 to 7755): Exon 1 8841 8365 ( 477 n); cDNA 2 479 ( 478 n); score: 0.993 MATCH C06HBa0158P14.1-17- SGN-E258662+ 0.993 477 0.996 C PGS_C06HBa0158P14.1-17-_SGN-E258662+ (8841 8365) Alignment (genomic DNA sequence = upper lines): TTTAAATATA AAATAATTAA TTAACGATGA AATAGTATTT ACCGCTTTAC TAACAGGCTC 8782 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTTAAATATA AAATAATTAA TTAACGATGA AATAGTATTT ACCGCTTTAC TAACAGGCTC 61 CCACGCGTCT TCGTGTTTAT AAACTCTCTT TTTTCTCCTT TCTTCTTTAC CTTTCACGTT 8722 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCACGCGTCT TCGTGTTTAT AAACTCTCTT TTTTCTCCTT TCTTCTTTAC CTTTCACGTT 121 CTTCAACGCT ACCCCCATTT TCTTCTCTCT GTGCTTTTTC -TTTTTTTCT CTTAGGAAAC 8663 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| |||||||||| CTTCAACGCT ACCCCCATTT TCTTCTCTCT GTGCTTTTTC TTTTTTTTCT CTTAGGAAAC 181 CTTTTTTATA TTCTCCGGCG AGCCAAATCG GAGCATAATT TGGGGGTTTT GAGTTATTGG 8603 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CTTTTTTATA TTCTCCGGCG AGCCAAATCG GAGCATAATT TGGGGGTTTT GAGTTATTGG 241 ATCTAACCGG GTTTATTGGG TTGAGTTTTG ACTGATCTCC GGCGACTGCA GATGTCTTCG 8543 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCTAACCGG GTTTATTGGG TTGAGTTTTG ACTGATCTCC GGCGACTGCA GATGTCTTCG 301 TACTGGTGTT ATCGGTGTAC AAGGTTTGTT AGAATTTCAG TTGGAAACGA TGTTGTTTGT 8483 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TACTGGTGTT ATCGGTGTAC AAGGTTTGTT AGAATTTCAG TTGGAAACGA TGTTGTTTGT 361 CCTCACTGTG ATAGTGGATT TATAGAAGTT GCTGAGGGAA ATATTGGGTC GCCGGAATCT 8423 |||||||||| |||||||||| |||||||||| |||||||||| |||||||| | |||||||||| CCTCACTGTG ATAGTGGATT TATAGAAGTT GCTGAGGGAA ATATTGGGGC GCCGGAATCT 421 CGCCGGAGGT TTCCCATGTG GAACGAACGG CCAGAGTCAG ATCGGAGTGT GAACATGG 8365 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||| CGCCGGAGGT TTCCCATGTG GAACGAACGG CCAGAGTCAG ATCGGAGTGT GAACATGG 479 hqPGS_C06HBa0158P14.1-17-_SGN-E258662+ (8841 8365) ******************************************************************************** EST sequence 12 +strand 257 n (File: SGN-E303892+) 1 TTATATTCTC CGGCGAGCCA AATCGGAGCA TAATTTGGGG GTTTTGAGTT ATTGGATCTA 61 ACCGGGTTTA TTGGGTTGAG TTTTGACTGA TCTCCGGCGA CTGCAGATGT CTTCGTACTG 121 GTGTTATCGG TGTACAAGGT TTGTTAGAAT TTCAATTGGA AACGATGTTG TTTGTCCTCA 181 CTGAGATAGT GGATTTATAG AAGTTGCTGA CGGAAACATT GGGTCGCCAG AATCTCTCCG 241 GAGGTTTCCC ATGTGGA Predicted gene structure (within gDNA segment 9257 to 7368): Exon 1 8657 8401 ( 257 n); cDNA 1 257 ( 257 n); score: 0.977 MATCH C06HBa0158P14.1-17- SGN-E303892+ 0.977 257 1.000 C PGS_C06HBa0158P14.1-17-_SGN-E303892+ (8657 8401) Alignment (genomic DNA sequence = upper lines): TTATATTCTC CGGCGAGCCA AATCGGAGCA TAATTTGGGG GTTTTGAGTT ATTGGATCTA 8598 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTATATTCTC CGGCGAGCCA AATCGGAGCA TAATTTGGGG GTTTTGAGTT ATTGGATCTA 60 ACCGGGTTTA TTGGGTTGAG TTTTGACTGA TCTCCGGCGA CTGCAGATGT CTTCGTACTG 8538 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACCGGGTTTA TTGGGTTGAG TTTTGACTGA TCTCCGGCGA CTGCAGATGT CTTCGTACTG 120 GTGTTATCGG TGTACAAGGT TTGTTAGAAT TTCAGTTGGA AACGATGTTG TTTGTCCTCA 8478 |||||||||| |||||||||| |||||||||| |||| ||||| |||||||||| |||||||||| GTGTTATCGG TGTACAAGGT TTGTTAGAAT TTCAATTGGA AACGATGTTG TTTGTCCTCA 180 CTGTGATAGT GGATTTATAG AAGTTGCTGA GGGAAATATT GGGTCGCCGG AATCTCGCCG 8418 ||| |||||| |||||||||| |||||||||| ||||| ||| |||||||| | |||||| ||| CTGAGATAGT GGATTTATAG AAGTTGCTGA CGGAAACATT GGGTCGCCAG AATCTCTCCG 240 GAGGTTTCCC ATGTGGA 8401 |||||||||| ||||||| GAGGTTTCCC ATGTGGA 257 hqPGS_C06HBa0158P14.1-17-_SGN-E303892+ (8657 8401) Total number of EST alignments reported: 31 ________________________________________________________________________________ Predicted gene locations (2) in segment 1 to 10379: PGL 1 (- strand): 3734 3460 AGS-1 (3734 3460) SCR (e 0.818) Exon 1 3734 3460 ( 275 n); score: 0.818 PGS (3734 3460) SGN-E230552+ 3-phase translation of AGS-1 (-strand): . . . . . . 3734 TTTATAAATTTGAAAAAATTACGTGATAAATAAACTTATATTATTTAATTACTCATCATA F I N L K K L R D K - T Y I I - L L I I L - I - K N Y V I N K L I L F N Y S S - Y K F E K I T - - I N L Y Y L I T H H . . . . . . 3674 ACTATAATTTGCTATAATTACCATCATGACTAACATTATACATTAATTACGTGGGCTGAC T I I C Y N Y H H D - H Y T L I T W A D L - F A I I T I M T N I I H - L R G L T N Y N L L - L P S - L T L Y I N Y V G - . . . . . . 3614 TTCGAGTTTATATAATTAGTTATGTTTGTATATATATAATTCGTCAGGATATACAAAAAC F E F I - L V M F V Y I - F V R I Y K N S S L Y N - L C L Y I Y N S S G Y T K T L R V Y I I S Y V C I Y I I R Q D I Q K . . . . . . 3554 ATATATATAATGTACAATTATTTAACCTATATACAAAGACAGTTCACCTCTCTCCCACTC I Y I M Y N Y L T Y I Q R Q F T S L P L Y I - C T I I - P I Y K D S S P L S H S H I Y N V Q L F N L Y T K T V H L S P T . . . . 3494 TCTGCCCTCTCTCGCTATCCTCTATCCTCCCTCTC S A L S R Y P L S S L L P S L A I L Y P P S L C P L S L S S I L P L Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-1 (+strand): . . . . . . 3460 GAGAGGGAGGATAGAGGATAGCGAGAGAGGGCAGAGAGTGGGAGAGAGGTGAACTGTCTT E R E D R G - R E R A E S G R E V N C L R G R I E D S E R G Q R V G E R - T V F E G G - R I A R E G R E W E R G E L S . . . . . . 3520 TGTATATAGGTTAAATAATTGTACATTATATATATGTTTTTGTATATCCTGACGAATTAT C I - V K - L Y I I Y M F L Y I L T N Y V Y R L N N C T L Y I C F C I S - R I I L Y I G - I I V H Y I Y V F V Y P D E L . . . . . . 3580 ATATATACAAACATAACTAATTATATAAACTCGAAGTCAGCCCACGTAATTAATGTATAA I Y T N I T N Y I N S K S A H V I N V - Y I Q T - L I I - T R S Q P T - L M Y N Y I Y K H N - L Y K L E V S P R N - C I . . . . . . 3640 TGTTAGTCATGATGGTAATTATAGCAAATTATAGTTATGATGAGTAATTAAATAATATAA C - S - W - L - Q I I V M M S N - I I - V S H D G N Y S K L - L - - V I K - Y K M L V M M V I I A N Y S Y D E - L N N I . . . . 3700 GTTTATTTATCACGTAATTTTTTCAAATTTATAAA V Y L S R N F F K F I F I Y H V I F S N L - S L F I T - F F Q I Y K Maximal non-overlapping open reading frames (>= 64 codons): none PGL 2 (- strand): 8841 6971 AGS-1 (8841 6971) SCR (e 0.997) Exon 1 8841 6971 (1871 n); score: 0.997 PGS (7319 6971) SGN-E204810- PGS (7498 6994) SGN-E377359+ PGS (7498 6997) SGN-E236510+ PGS (7666 7024) SGN-E379209- PGS (7269 7047) SGN-E389452- PGS (7827 7201) SGN-E303411+ PGS (7768 7211) SGN-E230973+ PGS (7769 7255) SGN-E235778+ PGS (7681 7261) SGN-E301410+ PGS (7853 7313) SGN-E237593+ PGS (8117 7473) SGN-E346740+ PGS (8118 7501) SGN-E214348+ PGS (8169 7527) SGN-E235290+ PGS (8305 7587) SGN-E389716+ PGS (8305 7593) SGN-E550068+ PGS (8000 7637) SGN-E204890+ PGS (8486 7759) SGN-E258359+ PGS (8322 7795) SGN-E206896+ PGS (8346 7836) SGN-E205039+ PGS (8591 7854) SGN-E334125+ PGS (8561 7876) SGN-E336061+ PGS (8464 8035) SGN-E210905+ PGS (8528 8048) SGN-E297776+ PGS (8706 8106) SGN-E271916+ PGS (8700 8131) SGN-E341510+ PGS (8840 8223) SGN-E255400+ PGS (8715 8356) SGN-E202184+ PGS (8841 8365) SGN-E258662+ PGS (8657 8401) SGN-E303892+ 3-phase translation of AGS-1 (-strand): . . . . . . 8841 TTTAAATATAAAATAATTAATTAACGATGAAATAGTATTTACCGCTTTACTAACAGGCTC F K Y K I I N - R - N S I Y R F T N R L L N I K - L I N D E I V F T A L L T G S - I - N N - L T M K - Y L P L Y - Q A . . . . . . 8781 CCACGCGTCTTCGTGTTTATAAACTCTCTTTTTTCTCCTTTCTTCTTTACCTTTCACGTT P R V F V F I N S L F S P F F F T F H V H A S S C L - T L F F L L S S L P F T F P T R L R V Y K L S F F S F L L Y L S R . . . . . . 8721 CTTCAACGCTACCCCCATTTTCTTCTCTCTGTGCTTTTTCTTTTTTTCTCTTAGGAAACC L Q R Y P H F L L S V L F L F F S - E T F N A T P I F F S L C F F F F S L R K P S S T L P P F S S L C A F S F F L L G N . . . . . . 8661 TTTTTTATATTCTCCGGCGAGCCAAATCGGAGCATAATTTGGGGGTTTTGAGTTATTGGA F F I F S G E P N R S I I W G F - V I G F L Y S P A S Q I G A - F G G F E L L D L F Y I L R R A K S E H N L G V L S Y W . . . . . . 8601 TCTAACCGGGTTTATTGGGTTGAGTTTTGACTGATCTCCGGCGACTGCAGATGTCTTCGT S N R V Y W V E F - L I S G D C R C L R L T G F I G L S F D - S P A T A D V F V I - P G L L G - V L T D L R R L Q M S S . . . . . . 8541 ACTGGTGTTATCGGTGTACAAGGTTTGTTAGAATTTCAGTTGGAAACGATGTTGTTTGTC T G V I G V Q G L L E F Q L E T M L F V L V L S V Y K V C - N F S W K R C C L S Y W C Y R C T R F V R I S V G N D V V C . . . . . . 8481 CTCACTGTGATAGTGGATTTATAGAAGTTGCTGAGGGAAATATTGGGTCGCCGGAATCTC L T V I V D L - K L L R E I L G R R N L S L - - W I Y R S C - G K Y W V A G I S P H C D S G F I E V A E G N I G S P E S . . . . . . 8421 GCCGGAGGTTTCCCATGTGGAACGAACGGCCAGAGTCAGATCGGAGTGTGAACATGGGTT A G G F P C G T N G Q S Q I G V - T W V P E V S H V E R T A R V R S E C E H G F R R R F P M W N E R P E S D R S V N M G . . . . . . 8361 CTCGACGGAGCAGGCGTAATCGGGGTGATAGATCTCCGTTTAATCCGGTTATTGTTCTTC L D G A G V I G V I D L R L I R L L F F S T E Q A - S G - - I S V - S G Y C S S S R R S R R N R G D R S P F N P V I V L . . . . . . 8301 GTAGTCCATCTGAAGCACCTGGGGAGGATGAAGCTGCTGCAGCTGCAGAGGAGCGGAGTT V V H L K H L G R M K L L Q L Q R S G V - S I - S T W G G - S C C S C R G A E L R S P S E A P G E D E A A A A A E E R S . . . . . . 8241 ATGAGCTTTATTATGATGATGGTGAAGGTTCAGGTCTCAGGCCGTTGCCGCCGACGATGT M S F I M M M V K V Q V S G R C R R R C - A L L - - W - R F R S Q A V A A D D V Y E L Y Y D D G E G S G L R P L P P T M . . . . . . 8181 CGGAGTTTTTGATGGGATCTGGGTTTGATCGGTTACTTGATCAGTTAGCACAGATCGAGG R S F - W D L G L I G Y L I S - H R S R G V F D G I W V - S V T - S V S T D R G S E F L M G S G F D R L L D Q L A Q I E . . . . . . 8121 TGAACGGTTTTGGTCGCCCGGAAAATCCACCGGCGTCGAAATCAGCGATTGAGTCGATGC - T V L V A R K I H R R R N Q R L S R C E R F W S P G K S T G V E I S D - V D A V N G F G R P E N P P A S K S A I E S M . . . . . . 8061 CGATTATTCAAATAGCTTCAAATCACGTAAATTCCGAGACCCATTGCGCTGTTTGTAAAG R L F K - L Q I T - I P R P I A L F V K D Y S N S F K S R K F R D P L R C L - R P I I Q I A S N H V N S E T H C A V C K . . . . . . 8001 AAGCTTTCGATTTAGGATCTGAAGCTCGAGAAATGCCCTGTAAACACATCTACCATTCCG K L S I - D L K L E K C P V N T S T I P S F R F R I - S S R N A L - T H L P F R E A F D L G S E A R E M P C K H I Y H S . . . . . . 7941 ATTGTATCCTCCCATGGCTATCTCTTCGAAATTCGTGCCCCGTTTGCCGACACGAATTAC I V S S H G Y L F E I R A P F A D T N Y L Y P P M A I S S K F V P R L P T R I T D C I L P W L S L R N S C P V C R H E L . . . . . . 7881 CAACGGAATCAACTGAAACTACAAACTCCGACAACATTTCTAGACCCAGAAACGAAGACG Q R N Q L K L Q T P T T F L D P E T K T N G I N - N Y K L R Q H F - T Q K R R R P T E S T E T T N S D N I S R P R N E D . . . . . . 7821 AGGCAATGGGATTGACAATATGGAGACTTCCGGGAGGTGGGTTCGCCGTAGGAAGATTTT R Q W D - Q Y G D F R E V G S P - E D F G N G I D N M E T S G R W V R R R K I F E A M G L T I W R L P G G G F A V G R F . . . . . . 7761 CCGGTGGAAGAAGAGGAGCTGAGAGAGAGCTTCCAGTAGTGTATACAGAAATGGACGGTG P V E E E E L R E S F Q - C I Q K W T V R W K K R S - E R A S S S V Y R N G R W S G G R R G A E R E L P V V Y T E M D G . . . . . . 7701 GATTTAACAATGGGGTACCTAGAAGAATAGCTTGGAGATCAAGAAGAAGCAACACAGGTC D L T M G Y L E E - L G D Q E E A T Q V I - Q W G T - K N S L E I K K K Q H R S G F N N G V P R R I A W R S R R S N T G . . . . . . 7641 GAAATGGCAACGGAATAAGCCGAATTTTCAACAACTTCACATCATTTTTCCGGCGATTAA E M A T E - A E F S T T S H H F S G D - K W Q R N K P N F Q Q L H I I F P A I N R N G N G I S R I F N N F T S F F R R L . . . . . . 7581 CACCATCTTCTCAACATCGATCTCTATCCATACATTCCAGTAGTTCAGAATCATCCGGTT H H L L N I D L Y P Y I P V V Q N H P V T I F S T S I S I H T F Q - F R I I R F T P S S Q H R S L S I H S S S S E S S G . . . . . . 7521 CTGGTTCTGGATCTGCTGTATTCAGGAGTCGAAGTGTATCTTCAAGCACTTCAATATTCA L V L D L L Y S G V E V Y L Q A L Q Y S W F W I C C I Q E S K C I F K H F N I Q S G S G S A V F R S R S V S S S T S I F . . . . . . 7461 GTAGGTATTTGAGAAGAAGCAGAAGAAATTGGGTACCTGAAGAACGTAATGGAGTAACAA V G I - E E A E E I G Y L K N V M E - Q - V F E K K Q K K L G T - R T - W S N K S R Y L R R S R R N W V P E E R N G V T . . . . . . 7401 GATGGTAATTACTTAGTCGGAAAACGCCAATTTTCAATTATTATTTTTATAGAGCAGTCG D G N Y L V G K R Q F S I I I F I E Q S M V I T - S E N A N F Q L L F L - S S R R W - L L S R K T P I F N Y Y F Y R A V . . . . . . 7341 ACTAGAAGCAGAAGACGATAACCCCCGATGCCAAGTGTAAGGCAATGTGTGATTGGTAGA T R S R R R - P P M P S V R Q C V I G R L E A E D D N P R C Q V - G N V - L V E D - K Q K T I T P D A K C K A M C D W - . . . . . . 7281 GCAGTCGACTAGAAGAAGAAGACAATAATGTCGTTCTTTAAATTATTACCTGTTGAGTGG A V D - K K K T I M S F F K L L P V E W Q S T R R R R Q - C R S L N Y Y L L S G S S R L E E E D N N V V L - I I T C - V . . . . . . 7221 GAAGGGAGCACTAAAAAAAGAGAAAGTTCGGTTCTAGAGCAGTCGACTAGAAGTAGAAGA E G S T K K R E S S V L E Q S T R S R R K G A L K K E K V R F - S S R L E V E D G R E H - K K R K F G S R A V D - K - K . . . . . . 7161 TTGATGGCTAAGAGAGCGGCCTATATGGCATAGAGAAAAGATGCCATTTTGTTGGGAATA L M A K R A A Y M A - R K D A I L L G I - W L R E R P I W H R E K M P F C W E Y I D G - E S G L Y G I E K R C H F V G N . . . . . . 7101 TGTAAATAGAGAAGGCTTTGATATGAAATTCAATACATTTTTAGTGTCATTTTGTTGAAT C K - R R L - Y E I Q Y I F S V I L L N V N R E G F D M K F N T F L V S F C - I M - I E K A L I - N S I H F - C H F V E . . . . . . 7041 TTGTAGCAGTAATTATAAGTAATAGAAAGACCATTGTTTTTTTTTATAGCAATTGAAAGA L - Q - L - V I E R P L F F F I A I E R C S S N Y K - - K D H C F F L - Q L K E F V A V I I S N R K T I V F F Y S N - K . . 6981 AAACTTAAGCT K L K N L S K T - A Maximal non-overlapping open reading frames (>= 64 codons): >C06HBa0158P14.1-17-_PGL-2_AGS-1_PPS_1 (8578 7394) (frame '0'; 1182 bp, 394 residues) 1 VLTDLRRLQM SSYWCYRCTR FVRISVGNDV VCPHCDSGFI EVAEGNIGSP ESRRRFPMWN 61 ERPESDRSVN MGSRRSRRNR GDRSPFNPVI VLRSPSEAPG EDEAAAAAEE RSYELYYDDG 121 EGSGLRPLPP TMSEFLMGSG FDRLLDQLAQ IEVNGFGRPE NPPASKSAIE SMPIIQIASN 181 HVNSETHCAV CKEAFDLGSE AREMPCKHIY HSDCILPWLS LRNSCPVCRH ELPTESTETT 241 NSDNISRPRN EDEAMGLTIW RLPGGGFAVG RFSGGRRGAE RELPVVYTEM DGGFNNGVPR 301 RIAWRSRRSN TGRNGNGISR IFNNFTSFFR RLTPSSQHRS LSIHSSSSES SGSGSGSAVF 361 RSRSVSSSTS IFSRYLRRSR RNWVPEERNG VTRW- 3-phase translation of AGS-1 (+strand): . . . . . . 6971 AGCTTAAGTTTTCTTTCAATTGCTATAAAAAAAAACAATGGTCTTTCTATTACTTATAAT S L S F L S I A I K K N N G L S I T Y N A - V F F Q L L - K K T M V F L L L I I L K F S F N C Y K K K Q W S F Y Y L - . . . . . . 7031 TACTGCTACAAATTCAACAAAATGACACTAAAAATGTATTGAATTTCATATCAAAGCCTT Y C Y K F N K M T L K M Y - I S Y Q S L T A T N S T K - H - K C I E F H I K A F L L L Q I Q Q N D T K N V L N F I S K P . . . . . . 7091 CTCTATTTACATATTCCCAACAAAATGGCATCTTTTCTCTATGCCATATAGGCCGCTCTC L Y L H I P N K M A S F L Y A I - A A L S I Y I F P T K W H L F S M P Y R P L S S L F T Y S Q Q N G I F S L C H I G R S . . . . . . 7151 TTAGCCATCAATCTTCTACTTCTAGTCGACTGCTCTAGAACCGAACTTTCTCTTTTTTTA L A I N L L L L V D C S R T E L S L F L - P S I F Y F - S T A L E P N F L F F - L S H Q S S T S S R L L - N R T F S F F . . . . . . 7211 GTGCTCCCTTCCCACTCAACAGGTAATAATTTAAAGAACGACATTATTGTCTTCTTCTTC V L P S H S T G N N L K N D I I V F F F C S L P T Q Q V I I - R T T L L S S S S S A P F P L N R - - F K E R H Y C L L L . . . . . . 7271 TAGTCGACTGCTCTACCAATCACACATTGCCTTACACTTGGCATCGGGGGTTATCGTCTT - S T A L P I T H C L T L G I G G Y R L S R L L Y Q S H I A L H L A S G V I V F L V D C S T N H T L P Y T W H R G L S S . . . . . . 7331 CTGCTTCTAGTCGACTGCTCTATAAAAATAATAATTGAAAATTGGCGTTTTCCGACTAAG L L L V D C S I K I I I E N W R F P T K C F - S T A L - K - - L K I G V F R L S S A S S R L L Y K N N N - K L A F S D - . . . . . . 7391 TAATTACCATCTTGTTACTCCATTACGTTCTTCAGGTACCCAATTTCTTCTGCTTCTTCT - L P S C Y S I T F F R Y P I S S A S S N Y H L V T P L R S S G T Q F L L L L L V I T I L L L H Y V L Q V P N F F C F F . . . . . . 7451 CAAATACCTACTGAATATTGAAGTGCTTGAAGATACACTTCGACTCCTGAATACAGCAGA Q I P T E Y - S A - R Y T S T P E Y S R K Y L L N I E V L E D T L R L L N T A D S N T Y - I L K C L K I H F D S - I Q Q . . . . . . 7511 TCCAGAACCAGAACCGGATGATTCTGAACTACTGGAATGTATGGATAGAGATCGATGTTG S R T R T G - F - T T G M Y G - R S M L P E P E P D D S E L L E C M D R D R C - I Q N Q N R M I L N Y W N V W I E I D V . . . . . . 7571 AGAAGATGGTGTTAATCGCCGGAAAAATGATGTGAAGTTGTTGAAAATTCGGCTTATTCC R R W C - S P E K - C E V V E N S A Y S E D G V N R R K N D V K L L K I R L I P E K M V L I A G K M M - S C - K F G L F . . . . . . 7631 GTTGCCATTTCGACCTGTGTTGCTTCTTCTTGATCTCCAAGCTATTCTTCTAGGTACCCC V A I S T C V A S S - S P S Y S S R Y P L P F R P V L L L L D L Q A I L L G T P R C H F D L C C F F L I S K L F F - V P . . . . . . 7691 ATTGTTAAATCCACCGTCCATTTCTGTATACACTACTGGAAGCTCTCTCTCAGCTCCTCT I V K S T V H F C I H Y W K L S L S S S L L N P P S I S V Y T T G S S L S A P L H C - I H R P F L Y T L L E A L S Q L L . . . . . . 7751 TCTTCCACCGGAAAATCTTCCTACGGCGAACCCACCTCCCGGAAGTCTCCATATTGTCAA S S T G K S S Y G E P T S R K S P Y C Q L P P E N L P T A N P P P G S L H I V N F F H R K I F L R R T H L P E V S I L S . . . . . . 7811 TCCCATTGCCTCGTCTTCGTTTCTGGGTCTAGAAATGTTGTCGGAGTTTGTAGTTTCAGT S H C L V F V S G S R N V V G V C S F S P I A S S S F L G L E M L S E F V V S V I P L P R L R F W V - K C C R S L - F Q . . . . . . 7871 TGATTCCGTTGGTAATTCGTGTCGGCAAACGGGGCACGAATTTCGAAGAGATAGCCATGG - F R W - F V S A N G A R I S K R - P W D S V G N S C R Q T G H E F R R D S H G L I P L V I R V G K R G T N F E E I A M . . . . . . 7931 GAGGATACAATCGGAATGGTAGATGTGTTTACAGGGCATTTCTCGAGCTTCAGATCCTAA E D T I G M V D V F T G H F S S F R S - R I Q S E W - M C L Q G I S R A S D P K G G Y N R N G R C V Y R A F L E L Q I L . . . . . . 7991 ATCGAAAGCTTCTTTACAAACAGCGCAATGGGTCTCGGAATTTACGTGATTTGAAGCTAT I E S F F T N S A M G L G I Y V I - S Y S K A S L Q T A Q W V S E F T - F E A I N R K L L Y K Q R N G S R N L R D L K L . . . . . . 8051 TTGAATAATCGGCATCGACTCAATCGCTGATTTCGACGCCGGTGGATTTTCCGGGCGACC L N N R H R L N R - F R R R W I F R A T - I I G I D S I A D F D A G G F S G R P F E - S A S T Q S L I S T P V D F P G D . . . . . . 8111 AAAACCGTTCACCTCGATCTGTGCTAACTGATCAAGTAACCGATCAAACCCAGATCCCAT K T V H L D L C - L I K - P I K P R S H K P F T S I C A N - S S N R S N P D P I Q N R S P R S V L T D Q V T D Q T Q I P . . . . . . 8171 CAAAAACTCCGACATCGTCGGCGGCAACGGCCTGAGACCTGAACCTTCACCATCATCATA Q K L R H R R R Q R P E T - T F T I I I K N S D I V G G N G L R P E P S P S S - S K T P T S S A A T A - D L N L H H H H . . . . . . 8231 ATAAAGCTCATAACTCCGCTCCTCTGCAGCTGCAGCAGCTTCATCCTCCCCAGGTGCTTC I K L I T P L L C S C S S F I L P R C F - S S - L R S S A A A A A S S S P G A S N K A H N S A P L Q L Q Q L H P P Q V L . . . . . . 8291 AGATGGACTACGAAGAACAATAACCGGATTAAACGGAGATCTATCACCCCGATTACGCCT R W T T K N N N R I K R R S I T P I T P D G L R R T I T G L N G D L S P R L R L Q M D Y E E Q - P D - T E I Y H P D Y A . . . . . . 8351 GCTCCGTCGAGAACCCATGTTCACACTCCGATCTGACTCTGGCCGTTCGTTCCACATGGG A P S R T H V H T P I - L W P F V P H G L R R E P M F T L R S D S G R S F H M G C S V E N P C S H S D L T L A V R S T W . . . . . . 8411 AAACCTCCGGCGAGATTCCGGCGACCCAATATTTCCCTCAGCAACTTCTATAAATCCACT K P P A R F R R P N I S L S N F Y K S T N L R R D S G D P I F P S A T S I N P L E T S G E I P A T Q Y F P Q Q L L - I H . . . . . . 8471 ATCACAGTGAGGACAAACAACATCGTTTCCAACTGAAATTCTAACAAACCTTGTACACCG I T V R T N N I V S N - N S N K P C T P S Q - G Q T T S F P T E I L T N L V H R Y H S E D K Q H R F Q L K F - Q T L Y T . . . . . . 8531 ATAACACCAGTACGAAGACATCTGCAGTCGCCGGAGATCAGTCAAAACTCAACCCAATAA I T P V R R H L Q S P E I S Q N S T Q - - H Q Y E D I C S R R R S V K T Q P N K D N T S T K T S A V A G D Q S K L N P I . . . . . . 8591 ACCCGGTTAGATCCAATAACTCAAAACCCCCAAATTATGCTCCGATTTGGCTCGCCGGAG T R L D P I T Q N P Q I M L R F G S P E P G - I Q - L K T P K L C S D L A R R R N P V R S N N S K P P N Y A P I W L A G . . . . . . 8651 AATATAAAAAAGGTTTCCTAAGAGAAAAAAAGAAAAAGCACAGAGAGAAGAAAATGGGGG N I K K V S - E K K R K S T E R R K W G I - K R F P K R K K E K A Q R E E N G G E Y K K G F L R E K K K K H R E K K M G . . . . . . 8711 TAGCGTTGAAGAACGTGAAAGGTAAAGAAGAAAGGAGAAAAAAGAGAGTTTATAAACACG - R - R T - K V K K K G E K R E F I N T S V E E R E R - R R K E K K E S L - T R V A L K N V K G K E E R R K K R V Y K H . . . . . . 8771 AAGACGCGTGGGAGCCTGTTAGTAAAGCGGTAAATACTATTTCATCGTTAATTAATTATT K T R G S L L V K R - I L F H R - L I I R R V G A C - - S G K Y Y F I V N - L F E D A W E P V S K A V N T I S S L I N Y . . 8831 TTATATTTAAA L Y L Y I - F I F K Maximal non-overlapping open reading frames (>= 64 codons): >C06HBa0158P14.1-17+_PGL-2_AGS-1_PPS_1 (7572 7952) (frame '2'; 378 bp, 126 residues) 1 EDGVNRRKND VKLLKIRLIP LPFRPVLLLL DLQAILLGTP LLNPPSISVY TTGSSLSAPL 61 LPPENLPTAN PPPGSLHIVN PIASSSFLGL EMLSEFVVSV DSVGNSCRQT GHEFRRDSHG 121 RIQSEW- >C06HBa0158P14.1-17+_PGL-2_AGS-1_PPS_2 (8515 8841) (frame '0'; 327 bp, 109 residues) 1 QTLYTDNTST KTSAVAGDQS KLNPINPVRS NNSKPPNYAP IWLAGEYKKG FLREKKKKHR 61 EKKMGVALKN VKGKEERRKK RVYKHEDAWE PVSKAVNTIS SLINYFIFK >C06HBa0158P14.1-17+_PGL-2_AGS-1_PPS_3 (8244 8480) (frame '2'; 234 bp, 78 residues) 1 LRSSAAAAAS SSPGASDGLR RTITGLNGDL SPRLRLLRRE PMFTLRSDSG RSFHMGNLRR 61 DSGDPIFPSA TSINPLSQ- >C06HBa0158P14.1-17+_PGL-2_AGS-1_PPS_4 (7365 7571) (frame '2'; 204 bp, 68 residues) 1 LKIGVFRLSN YHLVTPLRSS GTQFLLLLLK YLLNIEVLED TLRLLNTADP EPEPDDSELL 61 ECMDRDRC- AGS-2 (8340 7972,7713 7392) SCR (e 1.000 d 0.000 a 0.000,e 1.000) Exon 1 8340 7972 ( 369 n); score: 1.000 Intron 1 7971 7714 ( 258 n); Pd: 0.000 Pa: 0.000 Exon 2 7713 7392 ( 322 n); score: 1.000 PGS (8340 7972,7713 7392) SGN-E340963+ 3-phase translation of AGS-2 (-strand): . . . . . . 8340 GGGGTGATAGATCTCCGTTTAATCCGGTTATTGTTCTTCGTAGTCCATCTGAAGCACCTG G V I D L R L I R L L F F V V H L K H L G - - I S V - S G Y C S S - S I - S T W G D R S P F N P V I V L R S P S E A P . . . . . . 8280 GGGAGGATGAAGCTGCTGCAGCTGCAGAGGAGCGGAGTTATGAGCTTTATTATGATGATG G R M K L L Q L Q R S G V M S F I M M M G G - S C C S C R G A E L - A L L - - W G E D E A A A A A E E R S Y E L Y Y D D . . . . . . 8220 GTGAAGGTTCAGGTCTCAGGCCGTTGCCGCCGACGATGTCGGAGTTTTTGATGGGATCTG V K V Q V S G R C R R R C R S F - W D L - R F R S Q A V A A D D V G V F D G I W G E G S G L R P L P P T M S E F L M G S . . . . . . 8160 GGTTTGATCGGTTACTTGATCAGTTAGCACAGATCGAGGTGAACGGTTTTGGTCGCCCGG G L I G Y L I S - H R S R - T V L V A R V - S V T - S V S T D R G E R F W S P G G F D R L L D Q L A Q I E V N G F G R P . . . . . . 8100 AAAATCCACCGGCGTCGAAATCAGCGATTGAGTCGATGCCGATTATTCAAATAGCTTCAA K I H R R R N Q R L S R C R L F K - L Q K S T G V E I S D - V D A D Y S N S F K E N P P A S K S A I E S M P I I Q I A S . . . . . . 8040 ATCACGTAAATTCCGAGACCCATTGCGCTGTTTGTAAAGAAGCTTTCGATTTAGGATCTG I T - I P R P I A L F V K K L S I - D L S R K F R D P L R C L - R S F R F R I - N H V N S E T H C A V C K E A F D L G S . : . . . . . 7980 AAGCTCGAG : AAATGGACGGTGGATTTAACAATGGGGTACCTAGAAGAATAGCTTGGAGAT K L E : K W T V D L T M G Y L E E - L G D S S R : N G R W I - Q W G T - K N S L E I E A R : E M D G G F N N G V P R R I A W R . . . . . . 7662 CAAGAAGAAGCAACACAGGTCGAAATGGCAACGGAATAAGCCGAATTTTCAACAACTTCA Q E E A T Q V E M A T E - A E F S T T S K K K Q H R S K W Q R N K P N F Q Q L H S R R S N T G R N G N G I S R I F N N F . . . . . . 7602 CATCATTTTTCCGGCGATTAACACCATCTTCTCAACATCGATCTCTATCCATACATTCCA H H F S G D - H H L L N I D L Y P Y I P I I F P A I N T I F S T S I S I H T F Q T S F F R R L T P S S Q H R S L S I H S . . . . . . 7542 GTAGTTCAGAATCATCCGGTTCTGGTTCTGGATCTGCTGTATTCAGGAGTCGAAGTGTAT V V Q N H P V L V L D L L Y S G V E V Y - F R I I R F W F W I C C I Q E S K C I S S S E S S G S G S G S A V F R S R S V . . . . . . 7482 CTTCAAGCACTTCAATATTCAGTAGGTATTTGAGAAGAAGCAGAAGAAATTGGGTACCTG L Q A L Q Y S V G I - E E A E E I G Y L F K H F N I Q - V F E K K Q K K L G T - S S S T S I F S R Y L R R S R R N W V P . . . . 7422 AAGAACGTAATGGAGTAACAAGATGGTAATT K N V M E - Q D G N R T - W S N K M V I E E R N G V T R W - Maximal non-overlapping open reading frames (>= 64 codons): >C06HBa0158P14.1-17-_PGL-2_AGS-2_PPS_1 (8338 7972,7713 7394) (frame '0'; 684 bp, 228 residues) 1 GDRSPFNPVI VLRSPSEAPG EDEAAAAAEE RSYELYYDDG EGSGLRPLPP TMSEFLMGSG 61 FDRLLDQLAQ IEVNGFGRPE NPPASKSAIE SMPIIQIASN HVNSETHCAV CKEAFDLGSE 121 AREMDGGFNN GVPRRIAWRS RRSNTGRNGN GISRIFNNFT SFFRRLTPSS QHRSLSIHSS 181 SSESSGSGSG SAVFRSRSVS SSTSIFSRYL RRSRRNWVPE ERNGVTRW- ... finished at: Mon Aug 28 22:14:18 2006