GeneSeqer. Version of March 12, 2006. Date run: Mon Aug 28 21:28:23 2006 (Bayesian) Splice site model (species): Arabidopsis thaliana Fast search parameters: MinMatchLen 16, MinQualityHSP 30, MinQualityCHAIN 50. Total number of ESTs: 175665 Total sequence length: 93213537 Minimum sequence length: 89 Maximum sequence length: 1082 Length distribution (number of sequences of specified length): < 100: 1 < 200: 2188 < 300: 8544 < 400: 20465 < 500: 39499 < 600: 49432 < 700: 32872 < 800: 19308 < 900: 3155 < 1000: 193 >=1000: 8 Input file : /tmp/bac-submission-temp-1PKIV/C06HBa0250I21/C06HBa0250I21.seq.screen ________________________________________________________________________________ Sequence 1: C06HBa0250I21.1-1, from 1 to 2037, both strands analyzed. ... started at: Mon Aug 28 21:54:58 2006 EST library file: /tmp/cxgn-bacpublish-resources-v1XKpy/sgn_ests; matching gDNA +strand ... ... found all matches, elapsed seconds = 4 ... matches indexed, elapsed seconds = 5 HitsTableSize = 0 EST library file: /tmp/cxgn-bacpublish-resources-v1XKpy/sgn_ests; matching gDNA -strand ... ... found all matches, elapsed seconds = 4 ... matches indexed, elapsed seconds = 4 HitsTableSize = 0 No significant EST matches were found. ... finished at: Mon Aug 28 21:55:10 2006 ________________________________________________________________________________ Sequence 2: C06HBa0250I21.1-2, from 1 to 513, both strands analyzed. ... started at: Mon Aug 28 21:55:10 2006 EST library file: /tmp/cxgn-bacpublish-resources-v1XKpy/sgn_ests; matching gDNA +strand ... ... found all matches, elapsed seconds = 4 ... matches indexed, elapsed seconds = 4 HitsTableSize = 2 EST library file: /tmp/cxgn-bacpublish-resources-v1XKpy/sgn_ests; matching gDNA -strand ... ... found all matches, elapsed seconds = 4 ... matches indexed, elapsed seconds = 4 HitsTableSize = 1 ******************************************************************************** EST sequence 2 +strand 622 n (File: SGN-E545662+) 1 GATGATAACG AAAGATTTTT GAGGAATGCT TATGGTCTTG AATATCCAGA ACCTAATGTC 61 ACATTTTCAC TATGTCGAGG AAGTTGGTCT TCACCAGCGC TAAGGATCTA TAGACCAGAT 121 GAAGTCGCGA ACGAGCTTGA GAGAGCGAAA ATGGAGTATT TGGAAGCTTC GGTAGGAGTA 181 ACAAGTAAGA AGAAGATAAT GGTGCCCAAG CTAATGCAAT GGCACATGAA AGACTTTGCG 241 GATGATATGG AGTCTCTAAT AGAATGGATG TATAGTCAAT TACCAAGCTC GTGCTCTTTG 301 AAAAAGTCGA TGATGGATTG TCTTGATGCG GGGGAAAAGA AATATTTATC GCTAGCTAAG 361 ATGATAGAGG TTCAACCTTA TGCTTCAGAA TTTCGATACT TACTCCCACT ATGAACATAA 421 CAATTGTTTG CGCGTAGTTG ATTGAACTTT AATAATCTTA TTATTTTATT TGTTTGTTTT 481 TAAAGGTCTG AATTGTAATC ATTCGGACCT AAAATCCTCA AAAAGGAAAA TAGAGGTGTT 541 ACTTTAGATG GCTCAAAATT TCGATACTTG TTCCCCCTTA CGAAGTATTT ATTTGTTTGG 601 CAATTAATTA ATAGTTGTTA AA Predicted gene structure (within gDNA segment 1 to 513): Exon 1 100 513 ( 414 n); cDNA 1 414 ( 414 n); score: 1.000 MATCH C06HBa0250I21.1-2+ SGN-E545662+ 1.000 414 0.807 G PGS_C06HBa0250I21.1-2+_SGN-E545662+ (100 513) Alignment (genomic DNA sequence = upper lines): GATGATAACG AAAGATTTTT GAGGAATGCT TATGGTCTTG AATATCCAGA ACCTAATGTC 159 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATGATAACG AAAGATTTTT GAGGAATGCT TATGGTCTTG AATATCCAGA ACCTAATGTC 60 ACATTTTCAC TATGTCGAGG AAGTTGGTCT TCACCAGCGC TAAGGATCTA TAGACCAGAT 219 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACATTTTCAC TATGTCGAGG AAGTTGGTCT TCACCAGCGC TAAGGATCTA TAGACCAGAT 120 GAAGTCGCGA ACGAGCTTGA GAGAGCGAAA ATGGAGTATT TGGAAGCTTC GGTAGGAGTA 279 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAGTCGCGA ACGAGCTTGA GAGAGCGAAA ATGGAGTATT TGGAAGCTTC GGTAGGAGTA 180 ACAAGTAAGA AGAAGATAAT GGTGCCCAAG CTAATGCAAT GGCACATGAA AGACTTTGCG 339 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACAAGTAAGA AGAAGATAAT GGTGCCCAAG CTAATGCAAT GGCACATGAA AGACTTTGCG 240 GATGATATGG AGTCTCTAAT AGAATGGATG TATAGTCAAT TACCAAGCTC GTGCTCTTTG 399 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATGATATGG AGTCTCTAAT AGAATGGATG TATAGTCAAT TACCAAGCTC GTGCTCTTTG 300 AAAAAGTCGA TGATGGATTG TCTTGATGCG GGGGAAAAGA AATATTTATC GCTAGCTAAG 459 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAAAGTCGA TGATGGATTG TCTTGATGCG GGGGAAAAGA AATATTTATC GCTAGCTAAG 360 ATGATAGAGG TTCAACCTTA TGCTTCAGAA TTTCGATACT TACTCCCACT ATGA 513 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||| ATGATAGAGG TTCAACCTTA TGCTTCAGAA TTTCGATACT TACTCCCACT ATGA 414 hqPGS_C06HBa0250I21.1-2+_SGN-E545662+ (100 513) ******************************************************************************** EST sequence 1 +strand 639 n (File: SGN-E310582+) 1 ATGATAACGA AAGATTTTTG AGGAATGCTT ATGGTCTTGA ATATCCAGAA CCTAATGTCA 61 CATTTTCACT ATGTCGAGGA AGTTGGTCTT CACCAGCGCT AAGGATCTAT AGACCAGATG 121 AAGTCGCGAA CGAGCTTGAG AGAGCGAAAA TGGAGTATTT GGAAGCTTCG GTAGGAGTAA 181 CAAGTAAGAA GAAGATAATG GTGCCCAAGC TAATGCAATG GCACATGAAA GACTTTGCGG 241 ATGATATGGA GTCTCTAATA GAATGGATGT ATAGTCAATT ACCAAGCTCG TGCTCTTTGA 301 AAAAGTCGAT GATGGATTGT CTTGATGCGG GGGAAAAGAA ATATTTATCG CTAGCTAAGA 361 TGATAGAGGT TCAACCTTAT GCTTCAGAAT TTCGATACTT ACTCCCACTA TGAACATAAC 421 AATTGTTTGC GCGTAGTTGA TTGAACTTTA ATAATCTTAT TATTTTATTT GTTTGTTTTT 481 AAAGGTCTGA ATTGTAATCA TTCGGACCTA AAATCCTCAA AAAGGAAAAT AGAGGTGTTA 541 CTTTAGATGG CTCAAAATTT CGATACTTGT TCCCCCTTAC GAGTTATTTA TTTGTTTGCC 601 AATTAATTAA TAGTTGTTAA ATATAATAAT TATTAAGAC Predicted gene structure (within gDNA segment 1 to 513): Exon 1 101 513 ( 413 n); cDNA 1 413 ( 413 n); score: 1.000 MATCH C06HBa0250I21.1-2+ SGN-E310582+ 1.000 413 0.805 G PGS_C06HBa0250I21.1-2+_SGN-E310582+ (101 513) Alignment (genomic DNA sequence = upper lines): ATGATAACGA AAGATTTTTG AGGAATGCTT ATGGTCTTGA ATATCCAGAA CCTAATGTCA 160 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGATAACGA AAGATTTTTG AGGAATGCTT ATGGTCTTGA ATATCCAGAA CCTAATGTCA 60 CATTTTCACT ATGTCGAGGA AGTTGGTCTT CACCAGCGCT AAGGATCTAT AGACCAGATG 220 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATTTTCACT ATGTCGAGGA AGTTGGTCTT CACCAGCGCT AAGGATCTAT AGACCAGATG 120 AAGTCGCGAA CGAGCTTGAG AGAGCGAAAA TGGAGTATTT GGAAGCTTCG GTAGGAGTAA 280 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGTCGCGAA CGAGCTTGAG AGAGCGAAAA TGGAGTATTT GGAAGCTTCG GTAGGAGTAA 180 CAAGTAAGAA GAAGATAATG GTGCCCAAGC TAATGCAATG GCACATGAAA GACTTTGCGG 340 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAGTAAGAA GAAGATAATG GTGCCCAAGC TAATGCAATG GCACATGAAA GACTTTGCGG 240 ATGATATGGA GTCTCTAATA GAATGGATGT ATAGTCAATT ACCAAGCTCG TGCTCTTTGA 400 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGATATGGA GTCTCTAATA GAATGGATGT ATAGTCAATT ACCAAGCTCG TGCTCTTTGA 300 AAAAGTCGAT GATGGATTGT CTTGATGCGG GGGAAAAGAA ATATTTATCG CTAGCTAAGA 460 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAAGTCGAT GATGGATTGT CTTGATGCGG GGGAAAAGAA ATATTTATCG CTAGCTAAGA 360 TGATAGAGGT TCAACCTTAT GCTTCAGAAT TTCGATACTT ACTCCCACTA TGA 513 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||| TGATAGAGGT TCAACCTTAT GCTTCAGAAT TTCGATACTT ACTCCCACTA TGA 413 hqPGS_C06HBa0250I21.1-2+_SGN-E310582+ (101 513) ******************************************************************************** EST sequence 3 -strand 508 n (File: SGN-E545661-) 1 AGTAAGAAGA AGATAATGGT GCCCAAGCTA ATGCAAGGGC ACATGAAAGA CTTTGGGGAT 61 GATAGGGAGT CTCTAATAGA AGGGATGTAT AGTCAATTCC CAAGCTCGTG CTCTTGAAAA 121 AAGTCGATGA TGGATTGTCT TGATGCGGGG GAAAAGAAAT TTTTATCGCT AGCTAAGATG 181 ATAGAGGTTC AACCTTATGC TTCAAAATTT GGATACTTAC TCCCCCTATG AACATAACAA 241 TTGTTTGCGC GTAGTTGATG GAACTTTAAT AATCTTATTA TTTTATTGGT TGGTTTTTAA 301 AGGTCTGAAT GGAAATCATT GGGCCCTAAA TTCCTCAAAA AGGAAAATAG GGGGGTTACT 361 TTAGATGGCT CAAAATTTCG ATACTTGTTC CCCCTTACGA GTTATTTATT TGTTTCCCAA 421 TTAATTAATA GTTGTTAAAT ATAATAATTT TTAAGCCCCC AAAAAAAAAA AAAAAAAAAA 481 AAAAAAAAAA AAAAAAAAAA AAAGAAAA Predicted gene structure (within gDNA segment 1 to 513): Exon 1 283 513 ( 231 n); cDNA 1 231 ( 231 n); score: 0.952 PPA cDNA 461 508 MATCH C06HBa0250I21.1-2+ SGN-E545661- 0.952 231 0.455 C PGS_C06HBa0250I21.1-2+_SGN-E545661- (283 513) Alignment (genomic DNA sequence = upper lines): AGTAAGAAGA AGATAATGGT GCCCAAGCTA ATGCAATGGC ACATGAAAGA CTTTGCGGAT 342 |||||||||| |||||||||| |||||||||| |||||| ||| |||||||||| ||||| |||| AGTAAGAAGA AGATAATGGT GCCCAAGCTA ATGCAAGGGC ACATGAAAGA CTTTGGGGAT 60 GATATGGAGT CTCTAATAGA ATGGATGTAT AGTCAATTAC CAAGCTCGTG CTCTTTGAAA 402 |||| ||||| |||||||||| | |||||||| |||||||| | |||||||||| ||||| ||| GATAGGGAGT CTCTAATAGA AGGGATGTAT AGTCAATTCC CAAGCTCGTG CTCTTGAAAA 120 AAGTCGATGA TGGATTGTCT TGATGCGGGG GAAAAGAAAT ATTTATCGCT AGCTAAGATG 462 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| |||||||||| AAGTCGATGA TGGATTGTCT TGATGCGGGG GAAAAGAAAT TTTTATCGCT AGCTAAGATG 180 ATAGAGGTTC AACCTTATGC TTCAGAATTT CGATACTTAC TCCCACTATG A 513 |||||||||| |||||||||| |||| ||||| ||||||||| |||| ||||| | ATAGAGGTTC AACCTTATGC TTCAAAATTT GGATACTTAC TCCCCCTATG A 231 hqPGS_C06HBa0250I21.1-2+_SGN-E545661- (283 513) Total number of EST alignments reported: 3 ________________________________________________________________________________ Predicted gene locations (1) in segment 1 to 513: PGL 1 (+ strand): 100 513 AGS-1 (100 513) SCR (e 1.000) Exon 1 100 513 ( 414 n); score: 1.000 PGS (100 513) SGN-E545662+ PGS (101 513) SGN-E310582+ PGS (283 513) SGN-E545661- 3-phase translation of AGS-1 (+strand): . . . . . . 100 GATGATAACGAAAGATTTTTGAGGAATGCTTATGGTCTTGAATATCCAGAACCTAATGTC D D N E R F L R N A Y G L E Y P E P N V M I T K D F - G M L M V L N I Q N L M S - - R K I F E E C L W S - I S R T - C . . . . . . 160 ACATTTTCACTATGTCGAGGAAGTTGGTCTTCACCAGCGCTAAGGATCTATAGACCAGAT T F S L C R G S W S S P A L R I Y R P D H F H Y V E E V G L H Q R - G S I D Q M H I F T M S R K L V F T S A K D L - T R . . . . . . 220 GAAGTCGCGAACGAGCTTGAGAGAGCGAAAATGGAGTATTTGGAAGCTTCGGTAGGAGTA E V A N E L E R A K M E Y L E A S V G V K S R T S L R E R K W S I W K L R - E - - S R E R A - E S E N G V F G S F G R S . . . . . . 280 ACAAGTAAGAAGAAGATAATGGTGCCCAAGCTAATGCAATGGCACATGAAAGACTTTGCG T S K K K I M V P K L M Q W H M K D F A Q V R R R - W C P S - C N G T - K T L R N K - E E D N G A Q A N A M A H E R L C . . . . . . 340 GATGATATGGAGTCTCTAATAGAATGGATGTATAGTCAATTACCAAGCTCGTGCTCTTTG D D M E S L I E W M Y S Q L P S S C S L M I W S L - - N G C I V N Y Q A R A L - G - Y G V S N R M D V - S I T K L V L F . . . . . . 400 AAAAAGTCGATGATGGATTGTCTTGATGCGGGGGAAAAGAAATATTTATCGCTAGCTAAG K K S M M D C L D A G E K K Y L S L A K K S R - W I V L M R G K R N I Y R - L R E K V D D G L S - C G G K E I F I A S - . . . . . . 460 ATGATAGAGGTTCAACCTTATGCTTCAGAATTTCGATACTTACTCCCACTATGA M I E V Q P Y A S E F R Y L L P L - - - R F N L M L Q N F D T Y S H Y D D R G S T L C F R I S I L T P T M Maximal non-overlapping open reading frames (>= 64 codons): >C06HBa0250I21.1-2+_PGL-1_AGS-1_PPS_1 (100 513) (frame '1'; 411 bp, 137 residues) 1 DDNERFLRNA YGLEYPEPNV TFSLCRGSWS SPALRIYRPD EVANELERAK MEYLEASVGV 61 TSKKKIMVPK LMQWHMKDFA DDMESLIEWM YSQLPSSCSL KKSMMDCLDA GEKKYLSLAK 121 MIEVQPYASE FRYLLPL- 3-phase translation of AGS-1 (-strand): . . . . . . 513 TCATAGTGGGAGTAAGTATCGAAATTCTGAAGCATAAGGTTGAACCTCTATCATCTTAGC S - W E - V S K F - S I R L N L Y H L S H S G S K Y R N S E A - G - T S I I L A I V G V S I E I L K H K V E P L S S - . . . . . . 453 TAGCGATAAATATTTCTTTTCCCCCGCATCAAGACAATCCATCATCGACTTTTTCAAAGA - R - I F L F P R I K T I H H R L F Q R S D K Y F F S P A S R Q S I I D F F K E L A I N I S F P P H Q D N P S S T F S K . . . . . . 393 GCACGAGCTTGGTAATTGACTATACATCCATTCTATTAGAGACTCCATATCATCCGCAAA A R A W - L T I H P F Y - R L H I I R K H E L G N - L Y I H S I R D S I S S A K S T S L V I D Y T S I L L E T P Y H P Q . . . . . . 333 GTCTTTCATGTGCCATTGCATTAGCTTGGGCACCATTATCTTCTTCTTACTTGTTACTCC V F H V P L H - L G H H Y L L L T C Y S S F M C H C I S L G T I I F F L L V T P S L S C A I A L A W A P L S S S Y L L L . . . . . . 273 TACCGAAGCTTCCAAATACTCCATTTTCGCTCTCTCAAGCTCGTTCGCGACTTCATCTGG Y R S F Q I L H F R S L K L V R D F I W T E A S K Y S I F A L S S S F A T S S G L P K L P N T P F S L S Q A R S R L H L . . . . . . 213 TCTATAGATCCTTAGCGCTGGTGAAGACCAACTTCCTCGACATAGTGAAAATGTGACATT S I D P - R W - R P T S S T - - K C D I L - I L S A G E D Q L P R H S E N V T L V Y R S L A L V K T N F L D I V K M - H . . . . . . 153 AGGTTCTGGATATTCAAGACCATAAGCATTCCTCAAAAATCTTTCGTTATCATC R F W I F K T I S I P Q K S F V I I G S G Y S R P - A F L K N L S L S - V L D I Q D H K H S S K I F R Y H Maximal non-overlapping open reading frames (>= 64 codons): >C06HBa0250I21.1-2-_PGL-1_AGS-1_PPS_1 (454 158) (frame '0'; 294 bp, 98 residues) 1 LAINISFPPH QDNPSSTFSK STSLVIDYTS ILLETPYHPQ SLSCAIALAW APLSSSYLLL 61 LPKLPNTPFS LSQARSRLHL VYRSLALVKT NFLDIVKM- ... finished at: Mon Aug 28 21:55:19 2006 ________________________________________________________________________________ Sequence 3: C06HBa0250I21.1-3, from 1 to 1128, both strands analyzed. ... started at: Mon Aug 28 21:55:19 2006 EST library file: /tmp/cxgn-bacpublish-resources-v1XKpy/sgn_ests; matching gDNA +strand ... ... found all matches, elapsed seconds = 4 ... matches indexed, elapsed seconds = 4 HitsTableSize = 0 EST library file: /tmp/cxgn-bacpublish-resources-v1XKpy/sgn_ests; matching gDNA -strand ... ... found all matches, elapsed seconds = 4 ... matches indexed, elapsed seconds = 4 HitsTableSize = 0 No significant EST matches were found. ... finished at: Mon Aug 28 21:55:26 2006 ________________________________________________________________________________ Sequence 4: C06HBa0250I21.1-4, from 1 to 525, both strands analyzed. ... started at: Mon Aug 28 21:55:26 2006 EST library file: /tmp/cxgn-bacpublish-resources-v1XKpy/sgn_ests; matching gDNA +strand ... ... found all matches, elapsed seconds = 4 ... matches indexed, elapsed seconds = 4 HitsTableSize = 0 EST library file: /tmp/cxgn-bacpublish-resources-v1XKpy/sgn_ests; matching gDNA -strand ... ... found all matches, elapsed seconds = 4 ... matches indexed, elapsed seconds = 4 HitsTableSize = 0 No significant EST matches were found. ... finished at: Mon Aug 28 21:55:34 2006 ________________________________________________________________________________ Sequence 5: C06HBa0250I21.1-5, from 1 to 171, both strands analyzed. ... started at: Mon Aug 28 21:55:34 2006 EST library file: /tmp/cxgn-bacpublish-resources-v1XKpy/sgn_ests; matching gDNA +strand ... ... found all matches, elapsed seconds = 4 ... matches indexed, elapsed seconds = 4 HitsTableSize = 0 EST library file: /tmp/cxgn-bacpublish-resources-v1XKpy/sgn_ests; matching gDNA -strand ... ... found all matches, elapsed seconds = 3 ... matches indexed, elapsed seconds = 3 HitsTableSize = 0 No significant EST matches were found. ... finished at: Mon Aug 28 21:55:42 2006 ________________________________________________________________________________ Sequence 6: C06HBa0250I21.1-6, from 1 to 336, both strands analyzed. ... started at: Mon Aug 28 21:55:42 2006 EST library file: /tmp/cxgn-bacpublish-resources-v1XKpy/sgn_ests; matching gDNA +strand ... ... found all matches, elapsed seconds = 4 ... matches indexed, elapsed seconds = 4 HitsTableSize = 0 EST library file: /tmp/cxgn-bacpublish-resources-v1XKpy/sgn_ests; matching gDNA -strand ... ... found all matches, elapsed seconds = 4 ... matches indexed, elapsed seconds = 4 HitsTableSize = 0 No significant EST matches were found. ... finished at: Mon Aug 28 21:55:50 2006 ________________________________________________________________________________ Sequence 7: C06HBa0250I21.1-7, from 1 to 126, both strands analyzed. ... started at: Mon Aug 28 21:55:50 2006 EST library file: /tmp/cxgn-bacpublish-resources-v1XKpy/sgn_ests; matching gDNA +strand ... ... found all matches, elapsed seconds = 4 ... matches indexed, elapsed seconds = 4 HitsTableSize = 0 EST library file: /tmp/cxgn-bacpublish-resources-v1XKpy/sgn_ests; matching gDNA -strand ... ... found all matches, elapsed seconds = 4 ... matches indexed, elapsed seconds = 4 HitsTableSize = 0 No significant EST matches were found. ... finished at: Mon Aug 28 21:55:57 2006 ________________________________________________________________________________ Sequence 8: C06HBa0250I21.1-8, from 1 to 1938, both strands analyzed. ... started at: Mon Aug 28 21:55:57 2006 EST library file: /tmp/cxgn-bacpublish-resources-v1XKpy/sgn_ests; matching gDNA +strand ... ... found all matches, elapsed seconds = 4 ... matches indexed, elapsed seconds = 4 HitsTableSize = 0 EST library file: /tmp/cxgn-bacpublish-resources-v1XKpy/sgn_ests; matching gDNA -strand ... ... found all matches, elapsed seconds = 4 ... matches indexed, elapsed seconds = 4 HitsTableSize = 0 No significant EST matches were found. ... finished at: Mon Aug 28 21:56:05 2006 ________________________________________________________________________________ Sequence 9: C06HBa0250I21.1-9, from 1 to 1668, both strands analyzed. ... started at: Mon Aug 28 21:56:05 2006 EST library file: /tmp/cxgn-bacpublish-resources-v1XKpy/sgn_ests; matching gDNA +strand ... ... found all matches, elapsed seconds = 4 ... matches indexed, elapsed seconds = 4 HitsTableSize = 0 EST library file: /tmp/cxgn-bacpublish-resources-v1XKpy/sgn_ests; matching gDNA -strand ... ... found all matches, elapsed seconds = 3 ... matches indexed, elapsed seconds = 4 HitsTableSize = 0 No significant EST matches were found. ... finished at: Mon Aug 28 21:56:13 2006 ________________________________________________________________________________ Sequence 10: C06HBa0250I21.1-10, from 1 to 276, both strands analyzed. ... started at: Mon Aug 28 21:56:13 2006 EST library file: /tmp/cxgn-bacpublish-resources-v1XKpy/sgn_ests; matching gDNA +strand ... ... found all matches, elapsed seconds = 3 ... matches indexed, elapsed seconds = 3 HitsTableSize = 0 EST library file: /tmp/cxgn-bacpublish-resources-v1XKpy/sgn_ests; matching gDNA -strand ... ... found all matches, elapsed seconds = 4 ... matches indexed, elapsed seconds = 4 HitsTableSize = 0 No significant EST matches were found. ... finished at: Mon Aug 28 21:56:21 2006 ________________________________________________________________________________ Sequence 11: C06HBa0250I21.1-11, from 1 to 534, both strands analyzed. ... started at: Mon Aug 28 21:56:21 2006 EST library file: /tmp/cxgn-bacpublish-resources-v1XKpy/sgn_ests; matching gDNA +strand ... ... found all matches, elapsed seconds = 4 ... matches indexed, elapsed seconds = 4 HitsTableSize = 0 EST library file: /tmp/cxgn-bacpublish-resources-v1XKpy/sgn_ests; matching gDNA -strand ... ... found all matches, elapsed seconds = 5 ... matches indexed, elapsed seconds = 5 HitsTableSize = 0 No significant EST matches were found. ... finished at: Mon Aug 28 21:56:29 2006 ________________________________________________________________________________ Sequence 12: C06HBa0250I21.1-12, from 1 to 555, both strands analyzed. ... started at: Mon Aug 28 21:56:29 2006 EST library file: /tmp/cxgn-bacpublish-resources-v1XKpy/sgn_ests; matching gDNA +strand ... ... found all matches, elapsed seconds = 4 ... matches indexed, elapsed seconds = 4 HitsTableSize = 0 EST library file: /tmp/cxgn-bacpublish-resources-v1XKpy/sgn_ests; matching gDNA -strand ... ... found all matches, elapsed seconds = 5 ... matches indexed, elapsed seconds = 5 HitsTableSize = 0 No significant EST matches were found. ... finished at: Mon Aug 28 21:56:38 2006 ________________________________________________________________________________ Sequence 13: C06HBa0250I21.1-13, from 1 to 1185, both strands analyzed. ... started at: Mon Aug 28 21:56:38 2006 EST library file: /tmp/cxgn-bacpublish-resources-v1XKpy/sgn_ests; matching gDNA +strand ... ... found all matches, elapsed seconds = 4 ... matches indexed, elapsed seconds = 4 HitsTableSize = 2 EST library file: /tmp/cxgn-bacpublish-resources-v1XKpy/sgn_ests; matching gDNA -strand ... ... found all matches, elapsed seconds = 4 ... matches indexed, elapsed seconds = 4 HitsTableSize = 1 ******************************************************************************** EST sequence 1 -strand 514 n (File: SGN-E269366-) 1 ATTACACATT TTGATAGTGC ATCTTCAAAA TCCTTAAGAT CACACATCGA AAGCTCTGCA 61 ATATTCTGAA GATGTAATTT AGACTTGTCA TCTCTTAGCA TTGATGAATC AGTTTCTTTG 121 CCCCCTGTGA ACTGCTCTTT CTCACTAAAG CCAACAACAT CCATGGGCCT CATTGTTTCC 181 AGATAATCTT GAGCAATACT AATACCTACT AGTTCAAAGA AACTCGCTCT ATACTTTTAA 241 ACCTCCTTCT AAGATTAAAA AACTCCTTGG GTGCTGCACA TAGAAGGGAG AAACAATGAT 301 AGTTGCATTC CGGATCTGAA ACTTGGCAAA CTCGAGACCT TTCTAAGAGG TAAGTTCTAG 361 TAGCTGCACC AGACATTCTT CAATTTTTGG CAAAAGAAAT TTCCATAAAT TTACCAAAAT 421 GGCTTGATTT GTTATTTCTA AATGTTTTGG CATTCCCAAA TGCTTCAAGT ACTGGATTTG 481 ACTGTAAGCA GCATCAGCAA TAGAGAAAAC ATGA Predicted gene structure (within gDNA segment 1185 to 1): Exon 1 515 2 ( 514 n); cDNA 1 496 ( 496 n); score: 0.826 MATCH C06HBa0250I21.1-13- SGN-E269366- 0.826 514 1.000 C PGS_C06HBa0250I21.1-13-_SGN-E269366- (515 2) Alignment (genomic DNA sequence = upper lines): ATTACACGTT TCAATAGTGC ATCTTCCAAA TCCTTAAGAT CACACATCAA AAGCTCTGCA 456 ||||||| || | ||||||| |||||| ||| |||||||||| |||||||| | |||||||||| ATTACACATT TTGATAGTGC ATCTTCAAAA TCCTTAAGAT CACACATCGA AAGCTCTGCA 60 ACAGTCTGAA GATGGAACTT AGACTTCTCA TCTTTTAACA CTGATGAATC AATTTCTTTG 396 | | |||||| |||| || || |||||| ||| ||| ||| || ||||||||| | |||||||| ATATTCTGAA GATGTAATTT AGACTTGTCA TCTCTTAGCA TTGATGAATC AGTTTCTTTG 120 CCCTTTGCAA ACTGCTCTTT CTCACTAATG CCAACAACAT CCATGGCCCT CCTTGTTGCC 336 ||| || | |||||||||| |||||||| | |||||||||| |||||| ||| | ||||| || CCCCCTGTGA ACTGCTCTTT CTCACTAAAG CCAACAACAT CCATGGGCCT CATTGTTTCC 180 AGATAATCTT GAGCATCACT TACACCTACT AGCTCATAGC AACTCGATTG ATTAAGATAG 276 |||||||||| ||||| ||| | ||||||| || ||| || ||||| | | || AGATAATCTT GAGCAATACT AATACCTACT AGTTCAAAGA AACTC----G -CT---CTA- 231 TGAAATGTTT TAGGATCCCC CAACTTATAC TTTTCAACCT CCTCCTGGGG TGCTGCACAT 216 | | ||| || | || | | || | | || || || ||| | ||| |||||||||| T---A-CTTT TA--AACCTC CTTCTAAGA- TTAAAAAACT CCT--T-GGG TGCTGCACAT 281 AGAAGGTAGA AACAATGATA GTTGCGTTCA GGATCTGAAA CTTGGCAAAC ACGAGACCTT 156 |||||| ||| |||||||||| ||||| ||| |||||||||| |||||||||| ||||||||| AGAAGGGAGA AACAATGATA GTTGCATTCC GGATCTGAAA CTTGGCAAAC TCGAGACCTT 341 TCAAGGAGGT AAGTTCTAAT AGCTGCACCA GATATTCTTC CATTTTTGTC AAACTGAATC 96 || | ||||| |||||||| | |||||||||| || ||||||| ||||||| | ||| ||| TCTAAGAGGT AAGTTCTAGT AGCTGCACCA GACATTCTTC AATTTTTGGC AAAAGAAATT 401 TCCACAAATT TACCAAAACG ACTTGAATTG TTATTTCTAA CTGTTTTGGC ATTGCCAAAT 36 |||| ||||| |||||||| | ||||| ||| |||||||||| ||||||||| ||| |||||| TCCATAAATT TACCAAAATG GCTTGATTTG TTATTTCTAA ATGTTTTGGC ATTCCCAAAT 461 GCTTCAAGTA CTGGATTTGA -TTCAATTAG TTTCA 2 |||||||||| |||||||||| | || || ||| GCTTCAAGTA CTGGATTTGA CTGTAAGCAG CATCA 496 hqPGS_C06HBa0250I21.1-13-_SGN-E269366- (515 2) ******************************************************************************** EST sequence 2 -strand 788 n (File: SGN-E260836-) 1 AAGATTAAAA AACTCCTTGG GTGCTGCACA TAGAAGGGAG AAACAATGAT AGTTGCATTC 61 CGGATCTGAA ACTTGGCAAA CTCGAGACCT TTCTAAGAGG TAAGTTCTAG TAGCTGCACC 121 AGACATTCTT CAATTTTTGG CAAAAGAAAT TTCCATAAAT TTACCAAAAT GGCTTGATTT 181 GTTATTTCTA AATGTTTTGG CATTCCCAAA TGCTTCAAGT ACTGGATTTG ACTGTAAGCA 241 GCATCAGCAA TAGAGAAAAC ATGAGATATT AATTCGCCAA GCGGTGCTCC CCCTTGAATT 301 GTTCCATCAT GTTGCGATCA TATTGACGAG GAAACTTTTG GAATGGATTG ATGGCAATGA 361 TAATACTTTT AGTATAAGTG TGTCATAATG TCACATTATG ATTGAACCGC ACATAGATAC 421 AATCATTCAT TTCTTCCTCT CACTTATCTA CAGAAATATG ACCATAAACC TACATAGATT 481 TCGTTGATTT GATATCTTGA AGCCAAATTC AGCAAGATGC CAGGCTCATG CAAATATGTT 541 AATTTGGTAA TGTCATCAAA TCCAACAGCA TGAGCATTTT CATCTATGGG GTGTATGTTT 601 GATAAACTCA CTGTAACCTA GATGAATTGA AAAATCAAAT ATCAGTAAGC AGTTACGACT 661 GAAGACATAG CCACTTACAG TTGTGTCTGC TGGATTAAAA TTTTGTGACA GTGCAACATA 721 AGAGGGAACG AGACAGAGCT TACTAATACT TTCTTAAACA AAAAAACAAT AGCAACTACT 781 ACGCTGAA Predicted gene structure (within gDNA segment 1018 to 1): Exon 1 243 2 ( 242 n); cDNA 5 246 ( 242 n); score: 0.857 PPA cDNA 756 766 MATCH C06HBa0250I21.1-13- SGN-E260836- 0.857 242 0.307 C PGS_C06HBa0250I21.1-13-_SGN-E260836- (243 2) Alignment (genomic DNA sequence = upper lines): TTCAACCTCC TCCTGGGGTG CTGCACATAG AAGGTAGAAA CAATGATAGT TGCGTTCAGG 184 || || | |||| ||||| |||||||||| |||| ||||| |||||||||| ||| ||| || TTAAAA-AAC TCCTTGGGTG CTGCACATAG AAGGGAGAAA CAATGATAGT TGCATTCCGG 63 ATCTGAAACT TGGCAAACAC GAGACCTTTC AAGGAGGTAA GTTCTAATAG CTGCACCAGA 124 |||||||||| |||||||| | |||||||||| | ||||||| |||||| ||| |||||||||| ATCTGAAACT TGGCAAACTC GAGACCTTTC TAAGAGGTAA GTTCTAGTAG CTGCACCAGA 123 TATTCTTCCA TTTTTGTCAA ACTGAATCTC CACAAATTTA CCAAAACGAC TTGAATTGTT 64 ||||||| | |||||| ||| | ||| || || ||||||| |||||| | | |||| ||||| CATTCTTCAA TTTTTGGCAA AAGAAATTTC CATAAATTTA CCAAAATGGC TTGATTTGTT 183 ATTTCTAACT GTTTTGGCAT TGCCAAATGC TTCAAGTACT GGATTTGA-T TCAATTAGTT 5 |||||||| | |||||||||| | |||||||| |||||||||| |||||||| | || || ATTTCTAAAT GTTTTGGCAT TCCCAAATGC TTCAAGTACT GGATTTGACT GTAAGCAGCA 243 TCA 2 ||| TCA 246 hqPGS_C06HBa0250I21.1-13-_SGN-E260836- (243 2) ******************************************************************************** EST sequence 3 +strand 625 n (File: SGN-E324219+) 1 TCGTATGAAA ACTCTTCATC ATTCACTACA AATCGAGTTT ACTTCTGTCC TCTATTCATA 61 AAGTTCAATA AGCGGCATTT TCCTACACAT TCAAAAGTAA ATTCAATGTA GCTCCATCTA 121 TCTCTTCTCT AGTTAATCCT CCTTCTCAAT CTTGAACGTC TGCTAGTTCA GTTTTTTCTT 181 AGAAGATATG GACGAAAAAT CTATAAAGTT TCAACTGCAA ATACCTGGTT AAAGTGTTGT 241 TGCAGCTTCT CATTTGTGTA ATTAATGGAG CATTGTTAAA ATCAGTCAAA CAAGCAAGAA 301 TATAATGTTT TAGAAAGCCC ATTTATACAT ATGTTGAAGC ATCATGATCA AGATTCTGTT 361 TATTACTTCT TCAGTTGTGA CCATTACACA TTTTGATAGT GCATCTTCAA AATCCTTAAG 421 ATCACACATC GAAAGCTCTG CAATATTCTG AAGATGTAAT TTAGACTTGT CATCTCTTAG 481 CATTGATGAA TCAGTTTCTT TGCCCCCTGT GAACTGCTCT TTCTCACTAA AGCCAACAAC 541 ATCCATGGCC CTCATTGTTT CCAGATAATC TTGAGCAATA CTAATACCTA CTAGTTCAAA 601 GAAACTCGCT CTATACTTTT AAACC Predicted gene structure (within gDNA segment 1185 to 1): Exon 1 675 290 ( 386 n); cDNA 225 608 ( 384 n); score: 0.881 MATCH C06HBa0250I21.1-13- SGN-E324219+ 0.881 386 0.618 C PGS_C06HBa0250I21.1-13-_SGN-E324219+ (675 290) Alignment (genomic DNA sequence = upper lines): CTGGTTAAAG TGTTGCTGCA GCTTCTCATT TGTGAAATTA ATGCAGAATT GTTCAAAACA 616 |||||||||| ||||| |||| |||||||||| |||| ||||| ||| || ||| ||| ||| || CTGGTTAAAG TGTTGTTGCA GCTTCTCATT TGTGTAATTA ATGGAGCATT GTTAAAATCA 284 GTCAAACAAG CGAGAATATA ATGTTTTAGC AAGCCCATCT CTACTAACTG TTGCAGCATC 556 |||||||||| | |||||||| ||||||||| |||||||| | ||| | || ||| |||||| GTCAAACAAG CAAGAATATA ATGTTTTAGA AAGCCCATTT ATAC-ATATG TTGAAGCATC 343 AGGATCAAGA CTTCTCTTTA TTACTTCTTC AGGTGTGACC ATTACACGTT TCAATAGTGC 496 | |||||||| |||| |||| |||||||||| || ||||||| ||||||| || | ||||||| ATGATCAAGA -TTCTGTTTA TTACTTCTTC AGTTGTGACC ATTACACATT TTGATAGTGC 402 ATCTTCCAAA TCCTTAAGAT CACACATCAA AAGCTCTGCA ACAGTCTGAA GATGGAACTT 436 |||||| ||| |||||||||| |||||||| | |||||||||| | | |||||| |||| || || ATCTTCAAAA TCCTTAAGAT CACACATCGA AAGCTCTGCA ATATTCTGAA GATGTAATTT 462 AGACTTCTCA TCTTTTAACA CTGATGAATC AATTTCTTTG CCCTTTGCAA ACTGCTCTTT 376 |||||| ||| ||| ||| || ||||||||| | |||||||| ||| || | |||||||||| AGACTTGTCA TCTCTTAGCA TTGATGAATC AGTTTCTTTG CCCCCTGTGA ACTGCTCTTT 522 CTCACTAATG CCAACAACAT CCATGGCCCT CCTTGTTGCC AGATAATCTT GAGCATCACT 316 |||||||| | |||||||||| |||||||||| | ||||| || |||||||||| ||||| ||| CTCACTAAAG CCAACAACAT CCATGGCCCT CATTGTTTCC AGATAATCTT GAGCAATACT 582 TACACCTACT AGCTCATAGC AACTCG 290 | ||||||| || ||| || |||||| AATACCTACT AGTTCAAAGA AACTCG 608 hqPGS_C06HBa0250I21.1-13-_SGN-E324219+ (675 290) Total number of EST alignments reported: 3 ________________________________________________________________________________ Predicted gene locations (1) in segment 1 to 1185: PGL 1 (- strand): 675 2 AGS-1 (675 2) SCR (e 0.826) Exon 1 675 2 ( 674 n); score: 0.826 PGS (515 2) SGN-E269366- PGS (243 2) SGN-E260836- PGS (675 290) SGN-E324219+ 3-phase translation of AGS-1 (-strand): . . . . . . 675 CTGGTTAAAGTGTTGCTGCAGCTTCTCATTTGTGAAATTAATGCAGAATTGTTCAAAACA L V K V L L Q L L I C E I N A E L F K T W L K C C C S F S F V K L M Q N C S K Q G - S V A A A S H L - N - C R I V Q N . . . . . . 615 GTCAAACAAGCGAGAATATAATGTTTTAGCAAGCCCATCTCTACTAACTGTTGCAGCATC V K Q A R I - C F S K P I S T N C C S I S N K R E Y N V L A S P S L L T V A A S S Q T S E N I M F - Q A H L Y - L L Q H . . . . . . 555 AGGATCAAGACTTCTCTTTATTACTTCTTCAGGTGTGACCATTACACGTTTCAATAGTGC R I K T S L Y Y F F R C D H Y T F Q - C G S R L L F I T S S G V T I T R F N S A Q D Q D F S L L L L Q V - P L H V S I V . . . . . . 495 ATCTTCCAAATCCTTAAGATCACACATCAAAAGCTCTGCAACAGTCTGAAGATGGAACTT I F Q I L K I T H Q K L C N S L K M E L S S K S L R S H I K S S A T V - R W N L H L P N P - D H T S K A L Q Q S E D G T . . . . . . 435 AGACTTCTCATCTTTTAACACTGATGAATCAATTTCTTTGCCCTTTGCAAACTGCTCTTT R L L I F - H - - I N F F A L C K L L F D F S S F N T D E S I S L P F A N C S F - T S H L L T L M N Q F L C P L Q T A L . . . . . . 375 CTCACTAATGCCAACAACATCCATGGCCCTCCTTGTTGCCAGATAATCTTGAGCATCACT L T N A N N I H G P P C C Q I I L S I T S L M P T T S M A L L V A R - S - A S L S H - C Q Q H P W P S L L P D N L E H H . . . . . . 315 TACACCTACTAGCTCATAGCAACTCGATTGATTAAGATAGTGAAATGTTTTAGGATCCCC Y T Y - L I A T R L I K I V K C F R I P T P T S S - Q L D - L R - - N V L G S P L H L L A H S N S I D - D S E M F - D P . . . . . . 255 CAACTTATACTTTTCAACCTCCTCCTGGGGTGCTGCACATAGAAGGTAGAAACAATGATA Q L I L F N L L L G C C T - K V E T M I N L Y F S T S S W G A A H R R - K Q - - P T Y T F Q P P P G V L H I E G R N N D . . . . . . 195 GTTGCGTTCAGGATCTGAAACTTGGCAAACACGAGACCTTTCAAGGAGGTAAGTTCTAAT V A F R I - N L A N T R P F K E V S S N L R S G S E T W Q T R D L S R R - V L I S C V Q D L K L G K H E T F Q G G K F - . . . . . . 135 AGCTGCACCAGATATTCTTCCATTTTTGTCAAACTGAATCTCCACAAATTTACCAAAACG S C T R Y S S I F V K L N L H K F T K T A A P D I L P F L S N - I S T N L P K R - L H Q I F F H F C Q T E S P Q I Y Q N . . . . . . 75 ACTTGAATTGTTATTTCTAACTGTTTTGGCATTGCCAAATGCTTCAAGTACTGGATTTGA T - I V I S N C F G I A K C F K Y W I - L E L L F L T V L A L P N A S S T G F D D L N C Y F - L F W H C Q M L Q V L D L . . 15 TTCAATTAGTTTCA F N - F S I S F I Q L V S Maximal non-overlapping open reading frames (>= 64 codons): >C06HBa0250I21.1-13-_PGL-1_AGS-1_PPS_1 (674 447) (frame '2'; 225 bp, 75 residues) 1 WLKCCCSFSF VKLMQNCSKQ SNKREYNVLA SPSLLTVAAS GSRLLFITSS GVTITRFNSA 61 SSKSLRSHIK SSATV- 3-phase translation of AGS-1 (+strand): . . . . . . 2 TGAAACTAATTGAATCAAATCCAGTACTTGAAGCATTTGGCAATGCCAAAACAGTTAGAA - N - L N Q I Q Y L K H L A M P K Q L E E T N - I K S S T - S I W Q C Q N S - K K L I E S N P V L E A F G N A K T V R . . . . . . 62 ATAACAATTCAAGTCGTTTTGGTAAATTTGTGGAGATTCAGTTTGACAAAAATGGAAGAA I T I Q V V L V N L W R F S L T K M E E - Q F K S F W - I C G D S V - Q K W K N N N N S S R F G K F V E I Q F D K N G R . . . . . . 122 TATCTGGTGCAGCTATTAGAACTTACCTCCTTGAAAGGTCTCGTGTTTGCCAAGTTTCAG Y L V Q L L E L T S L K G L V F A K F Q I W C S Y - N L P P - K V S C L P S F R I S G A A I R T Y L L E R S R V C Q V S . . . . . . 182 ATCCTGAACGCAACTATCATTGTTTCTACCTTCTATGTGCAGCACCCCAGGAGGAGGTTG I L N A T I I V S T F Y V Q H P R R R L S - T Q L S L F L P S M C S T P G G G - D P E R N Y H C F Y L L C A A P Q E E V . . . . . . 242 AAAAGTATAAGTTGGGGGATCCTAAAACATTTCACTATCTTAATCAATCGAGTTGCTATG K S I S W G I L K H F T I L I N R V A M K V - V G G S - N I S L S - S I E L L - E K Y K L G D P K T F H Y L N Q S S C Y . . . . . . 302 AGCTAGTAGGTGTAAGTGATGCTCAAGATTATCTGGCAACAAGGAGGGCCATGGATGTTG S - - V - V M L K I I W Q Q G G P W M L A S R C K - C S R L S G N K E G H G C C E L V G V S D A Q D Y L A T R R A M D V . . . . . . 362 TTGGCATTAGTGAGAAAGAGCAGTTTGCAAAGGGCAAAGAAATTGATTCATCAGTGTTAA L A L V R K S S L Q R A K K L I H Q C - W H - - E R A V C K G Q R N - F I S V K V G I S E K E Q F A K G K E I D S S V L . . . . . . 422 AAGATGAGAAGTCTAAGTTCCATCTTCAGACTGTTGCAGAGCTTTTGATGTGTGATCTTA K M R S L S S I F R L L Q S F - C V I L R - E V - V P S S D C C R A F D V - S - K D E K S K F H L Q T V A E L L M C D L . . . . . . 482 AGGATTTGGAAGATGCACTATTGAAACGTGTAATGGTCACACCTGAAGAAGTAATAAAGA R I W K M H Y - N V - W S H L K K - - R G F G R C T I E T C N G H T - R S N K E K D L E D A L L K R V M V T P E E V I K . . . . . . 542 GAAGTCTTGATCCTGATGCTGCAACAGTTAGTAGAGATGGGCTTGCTAAAACATTATATT E V L I L M L Q Q L V E M G L L K H Y I K S - S - C C N S - - R W A C - N I I F R S L D P D A A T V S R D G L A K T L Y . . . . . . 602 CTCGCTTGTTTGACTGTTTTGAACAATTCTGCATTAATTTCACAAATGAGAAGCTGCAGC L A C L T V L N N S A L I S Q M R S C S S L V - L F - T I L H - F H K - E A A A S R L F D C F E Q F C I N F T N E K L Q . . 662 AACACTTTAACCAG N T L T T L - P Q H F N Q Maximal non-overlapping open reading frames (>= 64 codons): >C06HBa0250I21.1-13+_PGL-1_AGS-1_PPS_1 (4 675) (frame '0'; 672 bp, 224 residues) 1 KLIESNPVLE AFGNAKTVRN NNSSRFGKFV EIQFDKNGRI SGAAIRTYLL ERSRVCQVSD 61 PERNYHCFYL LCAAPQEEVE KYKLGDPKTF HYLNQSSCYE LVGVSDAQDY LATRRAMDVV 121 GISEKEQFAK GKEIDSSVLK DEKSKFHLQT VAELLMCDLK DLEDALLKRV MVTPEEVIKR 181 SLDPDAATVS RDGLAKTLYS RLFDCFEQFC INFTNEKLQQ HFNQ ... finished at: Mon Aug 28 21:56:48 2006 ________________________________________________________________________________ Sequence 14: C06HBa0250I21.1-14, from 1 to 345, both strands analyzed. ... started at: Mon Aug 28 21:56:48 2006 EST library file: /tmp/cxgn-bacpublish-resources-v1XKpy/sgn_ests; matching gDNA +strand ... ... found all matches, elapsed seconds = 3 ... matches indexed, elapsed seconds = 3 HitsTableSize = 0 EST library file: /tmp/cxgn-bacpublish-resources-v1XKpy/sgn_ests; matching gDNA -strand ... ... found all matches, elapsed seconds = 4 ... matches indexed, elapsed seconds = 4 HitsTableSize = 0 No significant EST matches were found. ... finished at: Mon Aug 28 21:56:56 2006 ________________________________________________________________________________ Sequence 15: C06HBa0250I21.1-15, from 1 to 294, both strands analyzed. ... started at: Mon Aug 28 21:56:56 2006 EST library file: /tmp/cxgn-bacpublish-resources-v1XKpy/sgn_ests; matching gDNA +strand ... ... found all matches, elapsed seconds = 4 ... matches indexed, elapsed seconds = 4 HitsTableSize = 0 EST library file: /tmp/cxgn-bacpublish-resources-v1XKpy/sgn_ests; matching gDNA -strand ... ... found all matches, elapsed seconds = 4 ... matches indexed, elapsed seconds = 4 HitsTableSize = 0 No significant EST matches were found. ... finished at: Mon Aug 28 21:57:03 2006 ________________________________________________________________________________ Sequence 16: C06HBa0250I21.1-16, from 1 to 630, both strands analyzed. ... started at: Mon Aug 28 21:57:03 2006 EST library file: /tmp/cxgn-bacpublish-resources-v1XKpy/sgn_ests; matching gDNA +strand ... ... found all matches, elapsed seconds = 3 ... matches indexed, elapsed seconds = 3 HitsTableSize = 0 EST library file: /tmp/cxgn-bacpublish-resources-v1XKpy/sgn_ests; matching gDNA -strand ... ... found all matches, elapsed seconds = 4 ... matches indexed, elapsed seconds = 4 HitsTableSize = 0 No significant EST matches were found. ... finished at: Mon Aug 28 21:57:10 2006 ________________________________________________________________________________ Sequence 17: C06HBa0250I21.1-17, from 1 to 99, both strands analyzed. ... started at: Mon Aug 28 21:57:10 2006 EST library file: /tmp/cxgn-bacpublish-resources-v1XKpy/sgn_ests; matching gDNA +strand ... ... found all matches, elapsed seconds = 4 ... matches indexed, elapsed seconds = 4 HitsTableSize = 0 EST library file: /tmp/cxgn-bacpublish-resources-v1XKpy/sgn_ests; matching gDNA -strand ... ... found all matches, elapsed seconds = 3 ... matches indexed, elapsed seconds = 3 HitsTableSize = 0 No significant EST matches were found. ... finished at: Mon Aug 28 21:57:18 2006 ________________________________________________________________________________ Sequence 18: C06HBa0250I21.1-18, from 1 to 945, both strands analyzed. ... started at: Mon Aug 28 21:57:18 2006 EST library file: /tmp/cxgn-bacpublish-resources-v1XKpy/sgn_ests; matching gDNA +strand ... ... found all matches, elapsed seconds = 4 ... matches indexed, elapsed seconds = 4 HitsTableSize = 1 EST library file: /tmp/cxgn-bacpublish-resources-v1XKpy/sgn_ests; matching gDNA -strand ... ... found all matches, elapsed seconds = 4 ... matches indexed, elapsed seconds = 4 HitsTableSize = 0 ******************************************************************************** EST sequence 1 +strand 665 n (File: SGN-E212216+) 1 AACGTGCTGA TGAGATAGAA AAGAAACGTG CTGACTCGCA AGAATCAAGT GAAGAAAAGC 61 ACAAGAAGTT GGAAGAAACT GAAAAAAAAG TTCAACAATA TCAGGAATCA ATGAGCAGGC 121 TCGAAGAAAA GCTCACCAAC ATAGAGTCGG AAAATAAAGT ACTTCGCCAG CAGGCTCTGA 181 CAATGGCACA GAACAATAAA TTGCTGTCGG GACGGTCAAG ATCAAGTATT CAGAGGACTG 241 AGAGCAGCAC AAGGAATAGC GTAGATCTGC ATAGCACTTC ATTTTCAAGG GAGAGTGCTG 301 AGGTGGAGGG AAGACCACAG AAATCACTTA ATGATAAACA ACAGGAGTAT CAGGACTTGA 361 TCATCCGGTG TATTGCACAG CACCTTGGCT TCTCTAAAGG CCGACCTGTT GCTGCCTGCA 421 TTATCTACAA GTGCCTTAGG CAGTGGCGAT CATTTGAAGT AGAGCGAACC AGTATCTTTG 481 ACAGGGTAAT ACAAACCATT GGCCAAGCTA TTGAGACTCA CGACAACAAT GATATGTTAG 541 CCTATTGGCT ATCCAATGCA TCCACTCTAT TGCTGCTGCT GCAACGTACA TTAAAAGCTG 601 GTGGTGCTGC TGGGATGACC CCACAGCACA TGCGATCATC GTCAGCCACT CTATTTGGGA 661 GAATG Predicted gene structure (within gDNA segment 1 to 945): Exon 1 6 576 ( 571 n); cDNA 97 665 ( 569 n); score: 0.975 MATCH C06HBa0250I21.1-18+ SGN-E212216+ 0.975 571 0.859 C PGS_C06HBa0250I21.1-18+_SGN-E212216+ (6 576) Alignment (genomic DNA sequence = upper lines): AATATTTGTT CGTCTTACCA ATAGGCTCGA AGAAAAGCTC ACCAACATAG AGTCGGAAAA 65 ||||| | || | | |||||||| |||||||||| |||||||||| |||||||||| AATATCAG-G AATC-AATGA GCAGGCTCGA AGAAAAGCTC ACCAACATAG AGTCGGAAAA 154 TAAAGTACTT CGCCAGCAGG CTCTGACAAT GGCACAGAAC AATAAATTGC TGTCGGGACG 125 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAAAGTACTT CGCCAGCAGG CTCTGACAAT GGCACAGAAC AATAAATTGC TGTCGGGACG 214 GTCAAGATCA AGTATTCAGA GGACTGAGAG CAGCACAAGG AATAGCGTAG ATCTGCATAG 185 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTCAAGATCA AGTATTCAGA GGACTGAGAG CAGCACAAGG AATAGCGTAG ATCTGCATAG 274 CACTTCATTT TCAAGGGAGA GTGCTGAGGT GGAGGGAAGA CCACAGAAAT CACTTAATGA 245 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CACTTCATTT TCAAGGGAGA GTGCTGAGGT GGAGGGAAGA CCACAGAAAT CACTTAATGA 334 TAAACAACAG GAGTATCAGG ACTTGATCAT CCGGTGTATT GCACAGCACC TTGGCTTCTC 305 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAAACAACAG GAGTATCAGG ACTTGATCAT CCGGTGTATT GCACAGCACC TTGGCTTCTC 394 TAAAGGCCGA CCTGTTGCTG CCTGCATTAT CTACAAGTGC CTTAGGCAGT GGCGATCATT 365 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TAAAGGCCGA CCTGTTGCTG CCTGCATTAT CTACAAGTGC CTTAGGCAGT GGCGATCATT 454 TGAAGTAGAG CGAACCAGTA TCTTTGACAG GGTAATACAA ACCATTGGCC AAGCTATTGA 425 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAAGTAGAG CGAACCAGTA TCTTTGACAG GGTAATACAA ACCATTGGCC AAGCTATTGA 514 GACTCAGGAC AACAATGATA TGTTAGCCTA TTGGCTATCC AATGCATCCA CTCTATTGCT 485 |||||| ||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GACTCACGAC AACAATGATA TGTTAGCCTA TTGGCTATCC AATGCATCCA CTCTATTGCT 574 GCTGCTGCAA CGTACATTAA AAGCTGGTGG TGCTGCTGGG ATGACCCCAC AGCACAGGCG 545 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||| ||| GCTGCTGCAA CGTACATTAA AAGCTGGTGG TGCTGCTGGG ATGACCCCAC AGCACATGCG 634 ATCATCGTCA GCCACTCTAT TTGGGAGAAT G 576 |||||||||| |||||||||| |||||||||| | ATCATCGTCA GCCACTCTAT TTGGGAGAAT G 665 hqPGS_C06HBa0250I21.1-18+_SGN-E212216+ (6 576) Total number of EST alignments reported: 1 ________________________________________________________________________________ Predicted gene locations (1) in segment 1 to 945: PGL 1 (+ strand): 6 576 AGS-1 (6 576) SCR (e 0.975) Exon 1 6 576 ( 571 n); score: 0.975 PGS (6 576) SGN-E212216+ 3-phase translation of AGS-1 (+strand): . . . . . . 6 AATATTTGTTCGTCTTACCAATAGGCTCGAAGAAAAGCTCACCAACATAGAGTCGGAAAA N I C S S Y Q - A R R K A H Q H R V G K I F V R L T N R L E E K L T N I E S E N Y L F V L P I G S K K S S P T - S R K . . . . . . 66 TAAAGTACTTCGCCAGCAGGCTCTGACAATGGCACAGAACAATAAATTGCTGTCGGGACG - S T S P A G S D N G T E Q - I A V G T K V L R Q Q A L T M A Q N N K L L S G R I K Y F A S R L - Q W H R T I N C C R D . . . . . . 126 GTCAAGATCAAGTATTCAGAGGACTGAGAGCAGCACAAGGAATAGCGTAGATCTGCATAG V K I K Y S E D - E Q H K E - R R S A - S R S S I Q R T E S S T R N S V D L H S G Q D Q V F R G L R A A Q G I A - I C I . . . . . . 186 CACTTCATTTTCAAGGGAGAGTGCTGAGGTGGAGGGAAGACCACAGAAATCACTTAATGA H F I F K G E C - G G G K T T E I T - - T S F S R E S A E V E G R P Q K S L N D A L H F Q G R V L R W R E D H R N H L M . . . . . . 246 TAAACAACAGGAGTATCAGGACTTGATCATCCGGTGTATTGCACAGCACCTTGGCTTCTC - T T G V S G L D H P V Y C T A P W L L K Q Q E Y Q D L I I R C I A Q H L G F S I N N R S I R T - S S G V L H S T L A S . . . . . . 306 TAAAGGCCGACCTGTTGCTGCCTGCATTATCTACAAGTGCCTTAGGCAGTGGCGATCATT - R P T C C C L H Y L Q V P - A V A I I K G R P V A A C I I Y K C L R Q W R S F L K A D L L L P A L S T S A L G S G D H . . . . . . 366 TGAAGTAGAGCGAACCAGTATCTTTGACAGGGTAATACAAACCATTGGCCAAGCTATTGA - S R A N Q Y L - Q G N T N H W P S Y - E V E R T S I F D R V I Q T I G Q A I E L K - S E P V S L T G - Y K P L A K L L . . . . . . 426 GACTCAGGACAACAATGATATGTTAGCCTATTGGCTATCCAATGCATCCACTCTATTGCT D S G Q Q - Y V S L L A I Q C I H S I A T Q D N N D M L A Y W L S N A S T L L L R L R T T M I C - P I G Y P M H P L Y C . . . . . . 486 GCTGCTGCAACGTACATTAAAAGCTGGTGGTGCTGCTGGGATGACCCCACAGCACAGGCG A A A T Y I K S W W C C W D D P T A Q A L L Q R T L K A G G A A G M T P Q H R R C C C N V H - K L V V L L G - P H S T G . . . . 546 ATCATCGTCAGCCACTCTATTTGGGAGAATG I I V S H S I W E N S S S A T L F G R M D H R Q P L Y L G E Maximal non-overlapping open reading frames (>= 64 codons): >C06HBa0250I21.1-18+_PGL-1_AGS-1_PPS_1 (7 576) (frame '2'; 570 bp, 190 residues) 1 IFVRLTNRLE EKLTNIESEN KVLRQQALTM AQNNKLLSGR SRSSIQRTES STRNSVDLHS 61 TSFSRESAEV EGRPQKSLND KQQEYQDLII RCIAQHLGFS KGRPVAACII YKCLRQWRSF 121 EVERTSIFDR VIQTIGQAIE TQDNNDMLAY WLSNASTLLL LLQRTLKAGG AAGMTPQHRR 181 SSSATLFGRM 3-phase translation of AGS-1 (-strand): . . . . . . 576 CATTCTCCCAAATAGAGTGGCTGACGATGATCGCCTGTGCTGTGGGGTCATCCCAGCAGC H S P K - S G - R - S P V L W G H P S S I L P N R V A D D D R L C C G V I P A A F S Q I E W L T M I A C A V G S S Q Q . . . . . . 516 ACCACCAGCTTTTAATGTACGTTGCAGCAGCAGCAATAGAGTGGATGCATTGGATAGCCA T T S F - C T L Q Q Q Q - S G C I G - P P P A F N V R C S S S N R V D A L D S Q H H Q L L M Y V A A A A I E W M H W I A . . . . . . 456 ATAGGCTAACATATCATTGTTGTCCTGAGTCTCAATAGCTTGGCCAATGGTTTGTATTAC I G - H I I V V L S L N S L A N G L Y Y - A N I S L L S - V S I A W P M V C I T N R L T Y H C C P E S Q - L G Q W F V L . . . . . . 396 CCTGTCAAAGATACTGGTTCGCTCTACTTCAAATGATCGCCACTGCCTAAGGCACTTGTA P V K D T G S L Y F K - S P L P K A L V L S K I L V R S T S N D R H C L R H L - P C Q R Y W F A L L Q M I A T A - G T C . . . . . . 336 GATAATGCAGGCAGCAACAGGTCGGCCTTTAGAGAAGCCAAGGTGCTGTGCAATACACCG D N A G S N R S A F R E A K V L C N T P I M Q A A T G R P L E K P R C C A I H R R - C R Q Q Q V G L - R S Q G A V Q Y T . . . . . . 276 GATGATCAAGTCCTGATACTCCTGTTGTTTATCATTAAGTGATTTCTGTGGTCTTCCCTC D D Q V L I L L L F I I K - F L W S S L M I K S - Y S C C L S L S D F C G L P S G - S S P D T P V V Y H - V I S V V F P . . . . . . 216 CACCTCAGCACTCTCCCTTGAAAATGAAGTGCTATGCAGATCTACGCTATTCCTTGTGCT H L S T L P - K - S A M Q I Y A I P C A T S A L S L E N E V L C R S T L F L V L P P Q H S P L K M K C Y A D L R Y S L C . . . . . . 156 GCTCTCAGTCCTCTGAATACTTGATCTTGACCGTCCCGACAGCAATTTATTGTTCTGTGC A L S P L N T - S - P S R Q Q F I V L C L S V L - I L D L D R P D S N L L F C A C S Q S S E Y L I L T V P T A I Y C S V . . . . . . 96 CATTGTCAGAGCCTGCTGGCGAAGTACTTTATTTTCCGACTCTATGTTGGTGAGCTTTTC H C Q S L L A K Y F I F R L Y V G E L F I V R A C W R S T L F S D S M L V S F S P L S E P A G E V L Y F P T L C W - A F . . . . 36 TTCGAGCCTATTGGTAAGACGAACAAATATT F E P I G K T N K Y S S L L V R R T N I L R A Y W - D E Q I Maximal non-overlapping open reading frames (>= 64 codons): >C06HBa0250I21.1-18-_PGL-1_AGS-1_PPS_1 (238 44) (frame '0'; 192 bp, 64 residues) 1 VISVVFPPPQ HSPLKMKCYA DLRYSLCCSQ SSEYLILTVP TAIYCSVPLS EPAGEVLYFP 61 TLCW- ... finished at: Mon Aug 28 21:57:25 2006 ________________________________________________________________________________ Sequence 19: C06HBa0250I21.1-19, from 1 to 291, both strands analyzed. ... started at: Mon Aug 28 21:57:25 2006 EST library file: /tmp/cxgn-bacpublish-resources-v1XKpy/sgn_ests; matching gDNA +strand ... ... found all matches, elapsed seconds = 4 ... matches indexed, elapsed seconds = 4 HitsTableSize = 0 EST library file: /tmp/cxgn-bacpublish-resources-v1XKpy/sgn_ests; matching gDNA -strand ... ... found all matches, elapsed seconds = 3 ... matches indexed, elapsed seconds = 3 HitsTableSize = 0 No significant EST matches were found. ... finished at: Mon Aug 28 21:57:33 2006 ________________________________________________________________________________ Sequence 20: C06HBa0250I21.1-20, from 1 to 255, both strands analyzed. ... started at: Mon Aug 28 21:57:33 2006 EST library file: /tmp/cxgn-bacpublish-resources-v1XKpy/sgn_ests; matching gDNA +strand ... ... found all matches, elapsed seconds = 4 ... matches indexed, elapsed seconds = 4 HitsTableSize = 0 EST library file: /tmp/cxgn-bacpublish-resources-v1XKpy/sgn_ests; matching gDNA -strand ... ... found all matches, elapsed seconds = 4 ... matches indexed, elapsed seconds = 4 HitsTableSize = 1 ******************************************************************************** EST sequence 1 -strand 799 n (File: SGN-E544524-) 1 CAAGTTCCTA TGTTCTTGTC TACTTGAATA GAAAGTTCTA GGTTTAATTT TTTAACCAAA 61 ATGAATTCTT ACTTTGGCTA GGTTGCGTAC GTGATAGCCA TGTTTAGGAA CTTTATTTGA 121 TGAAGTATTA ATTTTATAAG GAAAATCTTA CAAGTAGTAC ACTAAAGAGA CCTACAGGGA 181 ATATCTAGGT TTAGGACTTA CAAAAGCTAG GTAGTTTTTA CTTGGCTGGT AGTTAAAGAG 241 GCGGTACTAA CACAGGAAAT CTAATGAAGA GGGGAATACA TATGTGTCCT AGATGTTTTT 301 TTGTGAGCAA CAGGCAGAGA CAATCAACCA TCTGTTTCTT CATTGCAAGG TGGTTAGACA 361 ACTGTGGCAC TTATTTACCA TTCAGGTTCA GGGGCACAAA CTGGACCATG CCACAAAGGG 421 CAAGTCAGGC TATAGAAAGC TGGAACAATG AAGGCAGTGA TAGTACAGAC CAAAGCAGAT 481 GGAGAATTGT CCCAGCAGTG ATTTGGTGGA CCATATGGAA GGAGAGAAAT ATGAGATGCT 541 TTGAGAGCGC TAGTAGTCCT TTACACGGGA TTAAAATGAA CTGCACGATC ACTTTTTGCT 601 ATTGGTGCAG TTTGGAGTAT GTAGATGATC CTATAGCTGT TAGAGATATC CTAGGTCCTT 661 GTAAGATGAA ATAGGATCTA GTTTAGTTTT GTTTTAAGTA CACACACAAC TGTATGGAGC 721 TCCATGATGT AAATTTGGGA CCCCAGCCTT TAGTGCTGAA GATTAATACT CAAAACTGTT 781 ACCGTTGTCA AAAAAAAAA Predicted gene structure (within gDNA segment 1 to 255): Exon 1 1 254 ( 254 n); cDNA 408 661 ( 254 n); score: 0.961 PPA cDNA 790 799 MATCH C06HBa0250I21.1-20+ SGN-E544524- 0.961 254 0.996 G PGS_C06HBa0250I21.1-20+_SGN-E544524- (1 254) Alignment (genomic DNA sequence = upper lines): ATGCCACAAA GGGCAAGTCA GGCTATAGAA AGCTGGAACA ATGAAGGCAG TGGTAGTACA 60 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| || ||||||| ATGCCACAAA GGGCAAGTCA GGCTATAGAA AGCTGGAACA ATGAAGGCAG TGATAGTACA 467 GACCAAAGCA GATGGAGAAT TGTCCCAGCA GTGGTTTGGT GGACCATATG GAAGGAGAGA 120 |||||||||| |||||||||| |||||||||| ||| |||||| |||||||||| |||||||||| GACCAAAGCA GATGGAGAAT TGTCCCAGCA GTGATTTGGT GGACCATATG GAAGGAGAGA 527 AATATGAGAT GCTTTGAGAG TGTTAGTAGT CCTTTACACA GGAATAAAAT GAACTGCACA 180 |||||||||| |||||||||| | ||||||| ||||||||| ||| |||||| ||||||||| AATATGAGAT GCTTTGAGAG CGCTAGTAGT CCTTTACACG GGATTAAAAT GAACTGCACG 587 ATCACTTTTT GCTATTGGTG CAGTTTGGAG TATGTAGATG ATCCTATAAC TGTTAGAGAT 240 |||||||||| |||||||||| |||||||||| |||||||||| |||||||| | |||||||||| ATCACTTTTT GCTATTGGTG CAGTTTGGAG TATGTAGATG ATCCTATAGC TGTTAGAGAT 647 ATCCTAGCTC CATG 254 ||||||| || | || ATCCTAGGTC CTTG 661 hqPGS_C06HBa0250I21.1-20+_SGN-E544524- (1 254) Total number of EST alignments reported: 1 ________________________________________________________________________________ Predicted gene locations (1) in segment 1 to 255: PGL 1 (+ strand): 1 254 AGS-1 (1 254) SCR (e 0.961) Exon 1 1 254 ( 254 n); score: 0.961 PGS (1 254) SGN-E544524- 3-phase translation of AGS-1 (+strand): . . . . . . 1 ATGCCACAAAGGGCAAGTCAGGCTATAGAAAGCTGGAACAATGAAGGCAGTGGTAGTACA M P Q R A S Q A I E S W N N E G S G S T C H K G Q V R L - K A G T M K A V V V Q A T K G K S G Y R K L E Q - R Q W - Y . . . . . . 61 GACCAAAGCAGATGGAGAATTGTCCCAGCAGTGGTTTGGTGGACCATATGGAAGGAGAGA D Q S R W R I V P A V V W W T I W K E R T K A D G E L S Q Q W F G G P Y G R R E R P K Q M E N C P S S G L V D H M E G E . . . . . . 121 AATATGAGATGCTTTGAGAGTGTTAGTAGTCCTTTACACAGGAATAAAATGAACTGCACA N M R C F E S V S S P L H R N K M N C T I - D A L R V L V V L Y T G I K - T A Q K Y E M L - E C - - S F T Q E - N E L H . . . . . . 181 ATCACTTTTTGCTATTGGTGCAGTTTGGAGTATGTAGATGATCCTATAACTGTTAGAGAT I T F C Y W C S L E Y V D D P I T V R D S L F A I G A V W S M - M I L - L L E I N H F L L L V Q F G V C R - S Y N C - R . . 241 ATCCTAGCTCCATG I L A P S - L H Y P S S M Maximal non-overlapping open reading frames (>= 64 codons): >C06HBa0250I21.1-20+_PGL-1_AGS-1_PPS_1 (1 252) (frame '1'; 252 bp, 84 residues) 1 MPQRASQAIE SWNNEGSGST DQSRWRIVPA VVWWTIWKER NMRCFESVSS PLHRNKMNCT 61 ITFCYWCSLE YVDDPITVRD ILAP 3-phase translation of AGS-1 (-strand): . . . . . . 254 CATGGAGCTAGGATATCTCTAACAGTTATAGGATCATCTACATACTCCAAACTGCACCAA H G A R I S L T V I G S S T Y S K L H Q M E L G Y L - Q L - D H L H T P N C T N W S - D I S N S Y R I I Y I L Q T A P . . . . . . 194 TAGCAAAAAGTGATTGTGCAGTTCATTTTATTCCTGTGTAAAGGACTACTAACACTCTCA - Q K V I V Q F I L F L C K G L L T L S S K K - L C S S F Y S C V K D Y - H S Q I A K S D C A V H F I P V - R T T N T L . . . . . . 134 AAGCATCTCATATTTCTCTCCTTCCATATGGTCCACCAAACCACTGCTGGGACAATTCTC K H L I F L S F H M V H Q T T A G T I L S I S Y F S P S I W S T K P L L G Q F S K A S H I S L L P Y G P P N H C W D N S . . . . . . 74 CATCTGCTTTGGTCTGTACTACCACTGCCTTCATTGTTCCAGCTTTCTATAGCCTGACTT H L L W S V L P L P S L F Q L S I A - L I C F G L Y Y H C L H C S S F L - P D L P S A L V C T T T A F I V P A F Y S L T . . 14 GCCCTTTGTGGCAT A L C G P F V A C P L W H Maximal non-overlapping open reading frames (>= 64 codons): none ... finished at: Mon Aug 28 21:57:40 2006 ________________________________________________________________________________ Sequence 21: C06HBa0250I21.1-21, from 1 to 87, both strands analyzed. ... started at: Mon Aug 28 21:57:40 2006 EST library file: /tmp/cxgn-bacpublish-resources-v1XKpy/sgn_ests; matching gDNA +strand ... ... found all matches, elapsed seconds = 4 ... matches indexed, elapsed seconds = 4 HitsTableSize = 0 EST library file: /tmp/cxgn-bacpublish-resources-v1XKpy/sgn_ests; matching gDNA -strand ... ... found all matches, elapsed seconds = 3 ... matches indexed, elapsed seconds = 3 HitsTableSize = 0 No significant EST matches were found. ... finished at: Mon Aug 28 21:57:48 2006 ________________________________________________________________________________ Sequence 22: C06HBa0250I21.1-22, from 1 to 1752, both strands analyzed. ... started at: Mon Aug 28 21:57:48 2006 EST library file: /tmp/cxgn-bacpublish-resources-v1XKpy/sgn_ests; matching gDNA +strand ... ... found all matches, elapsed seconds = 4 ... matches indexed, elapsed seconds = 4 HitsTableSize = 0 EST library file: /tmp/cxgn-bacpublish-resources-v1XKpy/sgn_ests; matching gDNA -strand ... ... found all matches, elapsed seconds = 4 ... matches indexed, elapsed seconds = 4 HitsTableSize = 0 No significant EST matches were found. ... finished at: Mon Aug 28 21:57:55 2006 ________________________________________________________________________________ Sequence 23: C06HBa0250I21.1-23, from 1 to 129, both strands analyzed. ... started at: Mon Aug 28 21:57:55 2006 EST library file: /tmp/cxgn-bacpublish-resources-v1XKpy/sgn_ests; matching gDNA +strand ... ... found all matches, elapsed seconds = 3 ... matches indexed, elapsed seconds = 3 HitsTableSize = 0 EST library file: /tmp/cxgn-bacpublish-resources-v1XKpy/sgn_ests; matching gDNA -strand ... ... found all matches, elapsed seconds = 4 ... matches indexed, elapsed seconds = 4 HitsTableSize = 0 No significant EST matches were found. ... finished at: Mon Aug 28 21:58:02 2006 ________________________________________________________________________________ Sequence 24: C06HBa0250I21.1-24, from 1 to 273, both strands analyzed. ... started at: Mon Aug 28 21:58:02 2006 EST library file: /tmp/cxgn-bacpublish-resources-v1XKpy/sgn_ests; matching gDNA +strand ... ... found all matches, elapsed seconds = 3 ... matches indexed, elapsed seconds = 4 HitsTableSize = 0 EST library file: /tmp/cxgn-bacpublish-resources-v1XKpy/sgn_ests; matching gDNA -strand ... ... found all matches, elapsed seconds = 3 ... matches indexed, elapsed seconds = 3 HitsTableSize = 0 No significant EST matches were found. ... finished at: Mon Aug 28 21:58:10 2006 ________________________________________________________________________________ Sequence 25: C06HBa0250I21.1-25, from 1 to 228, both strands analyzed. ... started at: Mon Aug 28 21:58:10 2006 EST library file: /tmp/cxgn-bacpublish-resources-v1XKpy/sgn_ests; matching gDNA +strand ... ... found all matches, elapsed seconds = 4 ... matches indexed, elapsed seconds = 4 HitsTableSize = 0 EST library file: /tmp/cxgn-bacpublish-resources-v1XKpy/sgn_ests; matching gDNA -strand ... ... found all matches, elapsed seconds = 3 ... matches indexed, elapsed seconds = 4 HitsTableSize = 0 No significant EST matches were found. ... finished at: Mon Aug 28 21:58:17 2006 ________________________________________________________________________________ Sequence 26: C06HBa0250I21.1-26, from 1 to 402, both strands analyzed. ... started at: Mon Aug 28 21:58:17 2006 EST library file: /tmp/cxgn-bacpublish-resources-v1XKpy/sgn_ests; matching gDNA +strand ... ... found all matches, elapsed seconds = 3 ... matches indexed, elapsed seconds = 3 HitsTableSize = 0 EST library file: /tmp/cxgn-bacpublish-resources-v1XKpy/sgn_ests; matching gDNA -strand ... ... found all matches, elapsed seconds = 4 ... matches indexed, elapsed seconds = 4 HitsTableSize = 0 No significant EST matches were found. ... finished at: Mon Aug 28 21:58:24 2006 ________________________________________________________________________________ Sequence 27: C06HBa0250I21.1-27, from 1 to 945, both strands analyzed. ... started at: Mon Aug 28 21:58:24 2006 EST library file: /tmp/cxgn-bacpublish-resources-v1XKpy/sgn_ests; matching gDNA +strand ... ... found all matches, elapsed seconds = 3 ... matches indexed, elapsed seconds = 4 HitsTableSize = 0 EST library file: /tmp/cxgn-bacpublish-resources-v1XKpy/sgn_ests; matching gDNA -strand ... ... found all matches, elapsed seconds = 3 ... matches indexed, elapsed seconds = 3 HitsTableSize = 0 No significant EST matches were found. ... finished at: Mon Aug 28 21:58:32 2006 ________________________________________________________________________________ Sequence 28: C06HBa0250I21.1-28, from 1 to 1167, both strands analyzed. ... started at: Mon Aug 28 21:58:32 2006 EST library file: /tmp/cxgn-bacpublish-resources-v1XKpy/sgn_ests; matching gDNA +strand ... ... found all matches, elapsed seconds = 4 ... matches indexed, elapsed seconds = 4 HitsTableSize = 2 EST library file: /tmp/cxgn-bacpublish-resources-v1XKpy/sgn_ests; matching gDNA -strand ... ... found all matches, elapsed seconds = 4 ... matches indexed, elapsed seconds = 4 HitsTableSize = 0 ******************************************************************************** EST sequence 1 +strand 716 n (File: SGN-E551661+) 1 GAGAGGTATT TGCTTATACG GTATGAAATA GATGAGTTGA ACATCATGGT TGAAGATTTG 61 GATCGAAAAG TAAGTGCAGT TCATAACAGG GCAAAAGAAA AACTTGGATT GCCTGTATCC 121 GATGTTTCTA AAGATGCTAT CAATGAAGTA GGTATGGAAA CAATGAAGCA TAAACCTGTA 181 ATTCCTAATG TGGAACTCTC CGAGAGTACA TCTCACCGTT CAACCTCCAG ACAAGCATCA 241 GATATTCAAC AGTACAGGAA TGTAGATGTT TTCTTTGCAC CTTCAGTTGT TCCAAGTTCA 301 ACAACAATGA ATTTGAACCA TCGATCACAA TTGAAAGAAA ACGTTCATGA TGAGAATAAA 361 GTTCTATTGC CAAAAGTATC ACAGAATACT GCTGTTGGTG AAAATATTGC AACTTCTTCC 421 AGTACAGTTC TCAAGAAACA TCTTGCACAG GGGTCTTCAT CGACAGTTAG AGATGTAATT 481 ATTCTCAGTG ATGATGAAGA TTAGCAAACC CCCATACCAT ATCACAAACG GTAACAAGCA 541 TTTATATGTC AGTTCTCTGC TGTAAGTTTG CTGATTGTAA AACTTGAATT ATGTAACATG 601 ACTGGGAAAT GCTCTTTCAA CTCAATCTTG GCACTTTGTT TCGTGTATAT CTGTTCTGGT 661 ACTCTTTTTG TTTAATCGAA TCAACAGCTA TTGACATTTA AAAAAAAAAA AAAAAA Predicted gene structure (within gDNA segment 64 to 1167): Exon 1 664 1167 ( 504 n); cDNA 1 504 ( 504 n); score: 1.000 PPA cDNA 700 716 MATCH C06HBa0250I21.1-28+ SGN-E551661+ 1.000 504 0.704 C PGS_C06HBa0250I21.1-28+_SGN-E551661+ (664 1167) Alignment (genomic DNA sequence = upper lines): GAGAGGTATT TGCTTATACG GTATGAAATA GATGAGTTGA ACATCATGGT TGAAGATTTG 723 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGAGGTATT TGCTTATACG GTATGAAATA GATGAGTTGA ACATCATGGT TGAAGATTTG 60 GATCGAAAAG TAAGTGCAGT TCATAACAGG GCAAAAGAAA AACTTGGATT GCCTGTATCC 783 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATCGAAAAG TAAGTGCAGT TCATAACAGG GCAAAAGAAA AACTTGGATT GCCTGTATCC 120 GATGTTTCTA AAGATGCTAT CAATGAAGTA GGTATGGAAA CAATGAAGCA TAAACCTGTA 843 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATGTTTCTA AAGATGCTAT CAATGAAGTA GGTATGGAAA CAATGAAGCA TAAACCTGTA 180 ATTCCTAATG TGGAACTCTC CGAGAGTACA TCTCACCGTT CAACCTCCAG ACAAGCATCA 903 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTCCTAATG TGGAACTCTC CGAGAGTACA TCTCACCGTT CAACCTCCAG ACAAGCATCA 240 GATATTCAAC AGTACAGGAA TGTAGATGTT TTCTTTGCAC CTTCAGTTGT TCCAAGTTCA 963 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATATTCAAC AGTACAGGAA TGTAGATGTT TTCTTTGCAC CTTCAGTTGT TCCAAGTTCA 300 ACAACAATGA ATTTGAACCA TCGATCACAA TTGAAAGAAA ACGTTCATGA TGAGAATAAA 1023 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACAACAATGA ATTTGAACCA TCGATCACAA TTGAAAGAAA ACGTTCATGA TGAGAATAAA 360 GTTCTATTGC CAAAAGTATC ACAGAATACT GCTGTTGGTG AAAATATTGC AACTTCTTCC 1083 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTCTATTGC CAAAAGTATC ACAGAATACT GCTGTTGGTG AAAATATTGC AACTTCTTCC 420 AGTACAGTTC TCAAGAAACA TCTTGCACAG GGGTCTTCAT CGACAGTTAG AGATGTAATT 1143 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTACAGTTC TCAAGAAACA TCTTGCACAG GGGTCTTCAT CGACAGTTAG AGATGTAATT 480 ATTCTCAGTG ATGATGAAGA TTAG 1167 |||||||||| |||||||||| |||| ATTCTCAGTG ATGATGAAGA TTAG 504 hqPGS_C06HBa0250I21.1-28+_SGN-E551661+ (664 1167) ******************************************************************************** EST sequence 2 +strand 715 n (File: SGN-E553854+) 1 GAGAGGTATT TGCTTATACG GTATGAAATA GATGAGTTGA ACATCATGGT TGAAGATTTG 61 GATCGAAAAG TAAGTGCAGT TCATAACAGG GCAAAAGAAA AACTTGGATT GCCTGTATCC 121 GATGTTTCTA AAGATGCTAT CAATGAAGTA GGTATGGAAA CAATGAAGCA TAAACCTGTA 181 ATTCCTAATG TGGAACTCTC CGAGAGTACA TCACACCGTT CAACCTCCAG ACAAGCATCA 241 GATATTCAAC AGTACAGGAA TGTAGATGTT TTCTTTGCAC CTTCAGTTGT TCCAAGTTCA 301 ACAACAATGA ATTTGAACCA TCGATCACAA TTGAAAGAAA ACGTTCATGA TGAGAATAAA 361 GTTCTATTGC CAAAAGTATC ACAGAATACT GCTGTTGGTG AAAATATTGC AACTTCTTCC 421 AGTACAGTTC TCAAGAAACA TCTTGCACAG GGGTCTTCAT CGACAGTTAG AGATGTAATT 481 ATTCTCAGTG ATGATGAAGA TTAGCAAACC CCCATACCAT ATCACAAACG GTAACAAGCA 541 TTTATATGTC AGTTCTCTGC TGTAAGTTTG CTGATTGTAA AACTTGAATT ATGTAACATG 601 ACTGGGAAAT GCTCTTTCAA CTCAATCTTG GCACTTTGTT TCGTGTATAT CTGTTCTGGT 661 ACTCTTTTTG TTTAATCGAA TCAACAGCTA TTGACATTTA AAAAAAAAAA AAAAA Predicted gene structure (within gDNA segment 64 to 1167): Exon 1 664 1167 ( 504 n); cDNA 1 504 ( 504 n); score: 0.998 PPA cDNA 700 715 MATCH C06HBa0250I21.1-28+ SGN-E553854+ 0.998 504 0.705 C PGS_C06HBa0250I21.1-28+_SGN-E553854+ (664 1167) Alignment (genomic DNA sequence = upper lines): GAGAGGTATT TGCTTATACG GTATGAAATA GATGAGTTGA ACATCATGGT TGAAGATTTG 723 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGAGGTATT TGCTTATACG GTATGAAATA GATGAGTTGA ACATCATGGT TGAAGATTTG 60 GATCGAAAAG TAAGTGCAGT TCATAACAGG GCAAAAGAAA AACTTGGATT GCCTGTATCC 783 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATCGAAAAG TAAGTGCAGT TCATAACAGG GCAAAAGAAA AACTTGGATT GCCTGTATCC 120 GATGTTTCTA AAGATGCTAT CAATGAAGTA GGTATGGAAA CAATGAAGCA TAAACCTGTA 843 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATGTTTCTA AAGATGCTAT CAATGAAGTA GGTATGGAAA CAATGAAGCA TAAACCTGTA 180 ATTCCTAATG TGGAACTCTC CGAGAGTACA TCTCACCGTT CAACCTCCAG ACAAGCATCA 903 |||||||||| |||||||||| |||||||||| || ||||||| |||||||||| |||||||||| ATTCCTAATG TGGAACTCTC CGAGAGTACA TCACACCGTT CAACCTCCAG ACAAGCATCA 240 GATATTCAAC AGTACAGGAA TGTAGATGTT TTCTTTGCAC CTTCAGTTGT TCCAAGTTCA 963 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATATTCAAC AGTACAGGAA TGTAGATGTT TTCTTTGCAC CTTCAGTTGT TCCAAGTTCA 300 ACAACAATGA ATTTGAACCA TCGATCACAA TTGAAAGAAA ACGTTCATGA TGAGAATAAA 1023 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACAACAATGA ATTTGAACCA TCGATCACAA TTGAAAGAAA ACGTTCATGA TGAGAATAAA 360 GTTCTATTGC CAAAAGTATC ACAGAATACT GCTGTTGGTG AAAATATTGC AACTTCTTCC 1083 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTCTATTGC CAAAAGTATC ACAGAATACT GCTGTTGGTG AAAATATTGC AACTTCTTCC 420 AGTACAGTTC TCAAGAAACA TCTTGCACAG GGGTCTTCAT CGACAGTTAG AGATGTAATT 1143 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTACAGTTC TCAAGAAACA TCTTGCACAG GGGTCTTCAT CGACAGTTAG AGATGTAATT 480 ATTCTCAGTG ATGATGAAGA TTAG 1167 |||||||||| |||||||||| |||| ATTCTCAGTG ATGATGAAGA TTAG 504 hqPGS_C06HBa0250I21.1-28+_SGN-E553854+ (664 1167) Total number of EST alignments reported: 2 ________________________________________________________________________________ Predicted gene locations (1) in segment 1 to 1167: PGL 1 (+ strand): 664 1167 AGS-1 (664 1167) SCR (e 1.000) Exon 1 664 1167 ( 504 n); score: 1.000 PGS (664 1167) SGN-E551661+ PGS (664 1167) SGN-E553854+ 3-phase translation of AGS-1 (+strand): . . . . . . 664 GAGAGGTATTTGCTTATACGGTATGAAATAGATGAGTTGAACATCATGGTTGAAGATTTG E R Y L L I R Y E I D E L N I M V E D L R G I C L Y G M K - M S - T S W L K I W E V F A Y T V - N R - V E H H G - R F . . . . . . 724 GATCGAAAAGTAAGTGCAGTTCATAACAGGGCAAAAGAAAAACTTGGATTGCCTGTATCC D R K V S A V H N R A K E K L G L P V S I E K - V Q F I T G Q K K N L D C L Y P G S K S K C S S - Q G K R K T W I A C I . . . . . . 784 GATGTTTCTAAAGATGCTATCAATGAAGTAGGTATGGAAACAATGAAGCATAAACCTGTA D V S K D A I N E V G M E T M K H K P V M F L K M L S M K - V W K Q - S I N L - R C F - R C Y Q - S R Y G N N E A - T C . . . . . . 844 ATTCCTAATGTGGAACTCTCCGAGAGTACATCTCACCGTTCAACCTCCAGACAAGCATCA I P N V E L S E S T S H R S T S R Q A S F L M W N S P R V H L T V Q P P D K H Q N S - C G T L R E Y I S P F N L Q T S I . . . . . . 904 GATATTCAACAGTACAGGAATGTAGATGTTTTCTTTGCACCTTCAGTTGTTCCAAGTTCA D I Q Q Y R N V D V F F A P S V V P S S I F N S T G M - M F S L H L Q L F Q V Q R Y S T V Q E C R C F L C T F S C S K F . . . . . . 964 ACAACAATGAATTTGAACCATCGATCACAATTGAAAGAAAACGTTCATGATGAGAATAAA T T M N L N H R S Q L K E N V H D E N K Q Q - I - T I D H N - K K T F M M R I K N N N E F E P S I T I E R K R S - - E - . . . . . . 1024 GTTCTATTGCCAAAAGTATCACAGAATACTGCTGTTGGTGAAAATATTGCAACTTCTTCC V L L P K V S Q N T A V G E N I A T S S F Y C Q K Y H R I L L L V K I L Q L L P S S I A K S I T E Y C C W - K Y C N F F . . . . . . 1084 AGTACAGTTCTCAAGAAACATCTTGCACAGGGGTCTTCATCGACAGTTAGAGATGTAATT S T V L K K H L A Q G S S S T V R D V I V Q F S R N I L H R G L H R Q L E M - L Q Y S S Q E T S C T G V F I D S - R C N . . . 1144 ATTCTCAGTGATGATGAAGATTAG I L S D D E D - F S V M M K I Y S Q - - - R L Maximal non-overlapping open reading frames (>= 64 codons): >C06HBa0250I21.1-28+_PGL-1_AGS-1_PPS_1 (664 1167) (frame '1'; 501 bp, 167 residues) 1 ERYLLIRYEI DELNIMVEDL DRKVSAVHNR AKEKLGLPVS DVSKDAINEV GMETMKHKPV 61 IPNVELSEST SHRSTSRQAS DIQQYRNVDV FFAPSVVPSS TTMNLNHRSQ LKENVHDENK 121 VLLPKVSQNT AVGENIATSS STVLKKHLAQ GSSSTVRDVI ILSDDED- 3-phase translation of AGS-1 (-strand): . . . . . . 1167 CTAATCTTCATCATCACTGAGAATAATTACATCTCTAACTGTCGATGAAGACCCCTGTGC L I F I I T E N N Y I S N C R - R P L C - S S S S L R I I T S L T V D E D P C A N L H H H - E - L H L - L S M K T P V . . . . . . 1107 AAGATGTTTCTTGAGAACTGTACTGGAAGAAGTTGCAATATTTTCACCAACAGCAGTATT K M F L E N C T G R S C N I F T N S S I R C F L R T V L E E V A I F S P T A V F Q D V S - E L Y W K K L Q Y F H Q Q Q Y . . . . . . 1047 CTGTGATACTTTTGGCAATAGAACTTTATTCTCATCATGAACGTTTTCTTTCAATTGTGA L - Y F W Q - N F I L I M N V F F Q L - C D T F G N R T L F S S - T F S F N C D S V I L L A I E L Y S H H E R F L S I V . . . . . . 987 TCGATGGTTCAAATTCATTGTTGTTGAACTTGGAACAACTGAAGGTGCAAAGAAAACATC S M V Q I H C C - T W N N - R C K E N I R W F K F I V V E L G T T E G A K K T S I D G S N S L L L N L E Q L K V Q R K H . . . . . . 927 TACATTCCTGTACTGTTGAATATCTGATGCTTGTCTGGAGGTTGAACGGTGAGATGTACT Y I P V L L N I - C L S G G - T V R C T T F L Y C - I S D A C L E V E R - D V L L H S C T V E Y L M L V W R L N G E M Y . . . . . . 867 CTCGGAGAGTTCCACATTAGGAATTACAGGTTTATGCTTCATTGTTTCCATACCTACTTC L G E F H I R N Y R F M L H C F H T Y F S E S S T L G I T G L C F I V S I P T S S R R V P H - E L Q V Y A S L F P Y L L . . . . . . 807 ATTGATAGCATCTTTAGAAACATCGGATACAGGCAATCCAAGTTTTTCTTTTGCCCTGTT I D S I F R N I G Y R Q S K F F F C P V L I A S L E T S D T G N P S F S F A L L H - - H L - K H R I Q A I Q V F L L P C . . . . . . 747 ATGAACTGCACTTACTTTTCGATCCAAATCTTCAACCATGATGTTCAACTCATCTATTTC M N C T Y F S I Q I F N H D V Q L I Y F - T A L T F R S K S S T M M F N S S I S Y E L H L L F D P N L Q P - C S T H L F . . . 687 ATACCGTATAAGCAAATACCTCTC I P Y K Q I P L Y R I S K Y L H T V - A N T S Maximal non-overlapping open reading frames (>= 64 codons): >C06HBa0250I21.1-28-_PGL-1_AGS-1_PPS_1 (1093 848) (frame '0'; 243 bp, 81 residues) 1 ELYWKKLQYF HQQQYSVILL AIELYSHHER FLSIVIDGSN SLLLNLEQLK VQRKHLHSCT 61 VEYLMLVWRL NGEMYSRRVP H- >C06HBa0250I21.1-28-_PGL-1_AGS-1_PPS_2 (882 664) (frame '1'; 219 bp, 73 residues) 1 TVRCTLGEFH IRNYRFMLHC FHTYFIDSIF RNIGYRQSKF FFCPVMNCTY FSIQIFNHDV 61 QLIYFIPYKQ IPL ... finished at: Mon Aug 28 21:58:39 2006 ________________________________________________________________________________ Sequence 29: C06HBa0250I21.1-29, from 1 to 258, both strands analyzed. ... started at: Mon Aug 28 21:58:39 2006 EST library file: /tmp/cxgn-bacpublish-resources-v1XKpy/sgn_ests; matching gDNA +strand ... ... found all matches, elapsed seconds = 4 ... matches indexed, elapsed seconds = 4 HitsTableSize = 0 EST library file: /tmp/cxgn-bacpublish-resources-v1XKpy/sgn_ests; matching gDNA -strand ... ... found all matches, elapsed seconds = 3 ... matches indexed, elapsed seconds = 3 HitsTableSize = 0 No significant EST matches were found. ... finished at: Mon Aug 28 21:58:47 2006 ________________________________________________________________________________ Sequence 30: C06HBa0250I21.1-30, from 1 to 1059, both strands analyzed. ... started at: Mon Aug 28 21:58:47 2006 EST library file: /tmp/cxgn-bacpublish-resources-v1XKpy/sgn_ests; matching gDNA +strand ... ... found all matches, elapsed seconds = 4 ... matches indexed, elapsed seconds = 4 HitsTableSize = 0 EST library file: /tmp/cxgn-bacpublish-resources-v1XKpy/sgn_ests; matching gDNA -strand ... ... found all matches, elapsed seconds = 4 ... matches indexed, elapsed seconds = 4 HitsTableSize = 0 No significant EST matches were found. ... finished at: Mon Aug 28 21:58:54 2006 ________________________________________________________________________________ Sequence 31: C06HBa0250I21.1-31, from 1 to 312, both strands analyzed. ... started at: Mon Aug 28 21:58:54 2006 EST library file: /tmp/cxgn-bacpublish-resources-v1XKpy/sgn_ests; matching gDNA +strand ... ... found all matches, elapsed seconds = 3 ... matches indexed, elapsed seconds = 4 HitsTableSize = 0 EST library file: /tmp/cxgn-bacpublish-resources-v1XKpy/sgn_ests; matching gDNA -strand ... ... found all matches, elapsed seconds = 4 ... matches indexed, elapsed seconds = 4 HitsTableSize = 0 No significant EST matches were found. ... finished at: Mon Aug 28 21:59:02 2006 ________________________________________________________________________________ Sequence 32: C06HBa0250I21.1-32, from 1 to 579, both strands analyzed. ... started at: Mon Aug 28 21:59:02 2006 EST library file: /tmp/cxgn-bacpublish-resources-v1XKpy/sgn_ests; matching gDNA +strand ... ... found all matches, elapsed seconds = 4 ... matches indexed, elapsed seconds = 4 HitsTableSize = 0 EST library file: /tmp/cxgn-bacpublish-resources-v1XKpy/sgn_ests; matching gDNA -strand ... ... found all matches, elapsed seconds = 5 ... matches indexed, elapsed seconds = 5 HitsTableSize = 0 No significant EST matches were found. ... finished at: Mon Aug 28 21:59:11 2006 ________________________________________________________________________________ Sequence 33: C06HBa0250I21.1-33, from 1 to 2214, both strands analyzed. ... started at: Mon Aug 28 21:59:11 2006 EST library file: /tmp/cxgn-bacpublish-resources-v1XKpy/sgn_ests; matching gDNA +strand ... ... found all matches, elapsed seconds = 4 ... matches indexed, elapsed seconds = 4 HitsTableSize = 2 EST library file: /tmp/cxgn-bacpublish-resources-v1XKpy/sgn_ests; matching gDNA -strand ... ... found all matches, elapsed seconds = 4 ... matches indexed, elapsed seconds = 4 HitsTableSize = 1 ******************************************************************************** EST sequence 2 +strand 457 n (File: SGN-E544870+) 1 ATCATCCAGG GAGAAGAATG GAACATGGGG GAGGAAGACA CCTTTGAGAA TCTCAAATTT 61 TTGAACTTGC GTCTACCGAC TCTTTCCAAG TGGGAGGTTG GAGAGGAATC CTTCCCCAAT 121 CTTGAGAAAC TAAAACTGCA GGAATGTGGT AAGCTTGAGG AGATTCCACC TAGTTTTGGA 181 GATATTTATT CATTGAAATT TATCGAAATT GTAAATAGTC CTCAACTTGA AGATTCTGCT 241 CTCAAGATTA AGGAATACGC TGAAGAGATG AGAGGAGGGA GCGAGCTTCA GATCCTTGGC 301 CAGAAGAATA TCCCCTTATT TAAGTAGCAT TATGGTTGAA AAGTAGATTG TACTTTGCAG 361 GGTACATTGT ATATGATTAA GAAAACTTTG TTGCAGTTAT GAAATATTTT TGTGGATTTC 421 TCANNNNANA AAAAAAAAAA AAAAAAAAAA AAAAAAA Predicted gene structure (within gDNA segment 1207 to 2214): Exon 1 1888 2214 ( 327 n); cDNA 1 327 ( 327 n); score: 0.982 PPA cDNA 428 457 MATCH C06HBa0250I21.1-33+ SGN-E544870+ 0.982 327 0.716 C PGS_C06HBa0250I21.1-33+_SGN-E544870+ (1888 2214) Alignment (genomic DNA sequence = upper lines): ATCATCCATG GAGAAGAATG GAACATGGGG GAGGAAGACA CCTTTGAGAA TCTCAAATTT 1947 |||||||| | |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCATCCAGG GAGAAGAATG GAACATGGGG GAGGAAGACA CCTTTGAGAA TCTCAAATTT 60 TTGAACTTGC GTCTACCGAC TCTTTCCAAG TGGGAGGTTG GAGAGGAATC CTTCCCCAAT 2007 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGAACTTGC GTCTACCGAC TCTTTCCAAG TGGGAGGTTG GAGAGGAATC CTTCCCCAAT 120 CTTGAGAAAT TAAAACTGCA GGAATGTGGT AAGTTTGAGG AGATTCCACC TAGTTTTGGA 2067 ||||||||| |||||||||| |||||||||| ||| |||||| |||||||||| |||||||||| CTTGAGAAAC TAAAACTGCA GGAATGTGGT AAGCTTGAGG AGATTCCACC TAGTTTTGGA 180 GATATTTATT CATTGAAATT TATCAAAATT GTAAAGAGTC CTCAACTTGA AGATTCTGCT 2127 |||||||||| |||||||||| |||| ||||| ||||| |||| |||||||||| |||||||||| GATATTTATT CATTGAAATT TATCGAAATT GTAAATAGTC CTCAACTTGA AGATTCTGCT 240 CTCAAGATTA AGGAATACGC TGAAGAAATG AGAGGAGGGA GCGAGCTTCA GATCCTTGGC 2187 |||||||||| |||||||||| |||||| ||| |||||||||| |||||||||| |||||||||| CTCAAGATTA AGGAATACGC TGAAGAGATG AGAGGAGGGA GCGAGCTTCA GATCCTTGGC 300 CAGAAGAATA TCCCCTTATT TAAGTAG 2214 |||||||||| |||||||||| ||||||| CAGAAGAATA TCCCCTTATT TAAGTAG 327 hqPGS_C06HBa0250I21.1-33+_SGN-E544870+ (1888 2214) ******************************************************************************** EST sequence 3 -strand 457 n (File: SGN-E544869-) 1 ATCATCCAGG GAGAAGAATG GAACATGGGG GAGGAAGACA CCTTTGAGAA TCTCAAATTT 61 TTGAAGTGGG GTTTACGGAC TTTTTTCAAG TGGGAGGTTG GAGAGAAATC CTTCCCCAAT 121 CTTGAGAAAC TAAAACTGCA GGAATGTGGT AAGCTTGAGG AGATTCCCCC TAGTTTTGGA 181 GATATTTATT CATTGAAATT TATGGAAATT GTAAATAGTC CTCAACTTGA AGATTCTGCT 241 CTCAAGATTA AGGAATACGT TGAAGAGATG AGAGGAGGGA GCGAGCTTCA GATCCTTGGC 301 CAGAAGAATA TCCCCTTATT TAAGTAGCAT TAGGGTTGAA AAGTAGATTG TACTTTGCAG 361 GGTACATTGT ATATGATTAA GAAAACTTTG TTGCAGTTAT GAAATATTTT TGTGGATTTC 421 TCAAAAAAAA AAAAAAAAAA AAAAAAAAAA AAAGGAA Predicted gene structure (within gDNA segment 1197 to 2214): Exon 1 1888 2214 ( 327 n); cDNA 1 327 ( 327 n); score: 0.948 PPA cDNA 423 454 MATCH C06HBa0250I21.1-33+ SGN-E544869- 0.948 327 0.716 C PGS_C06HBa0250I21.1-33+_SGN-E544869- (1888 2214) Alignment (genomic DNA sequence = upper lines): ATCATCCATG GAGAAGAATG GAACATGGGG GAGGAAGACA CCTTTGAGAA TCTCAAATTT 1947 |||||||| | |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCATCCAGG GAGAAGAATG GAACATGGGG GAGGAAGACA CCTTTGAGAA TCTCAAATTT 60 TTGAACTTGC GTCTACCGAC TCTTTCCAAG TGGGAGGTTG GAGAGGAATC CTTCCCCAAT 2007 ||||| | | || ||| ||| | ||| |||| |||||||||| ||||| |||| |||||||||| TTGAAGTGGG GTTTACGGAC TTTTTTCAAG TGGGAGGTTG GAGAGAAATC CTTCCCCAAT 120 CTTGAGAAAT TAAAACTGCA GGAATGTGGT AAGTTTGAGG AGATTCCACC TAGTTTTGGA 2067 ||||||||| |||||||||| |||||||||| ||| |||||| ||||||| || |||||||||| CTTGAGAAAC TAAAACTGCA GGAATGTGGT AAGCTTGAGG AGATTCCCCC TAGTTTTGGA 180 GATATTTATT CATTGAAATT TATCAAAATT GTAAAGAGTC CTCAACTTGA AGATTCTGCT 2127 |||||||||| |||||||||| ||| ||||| ||||| |||| |||||||||| |||||||||| GATATTTATT CATTGAAATT TATGGAAATT GTAAATAGTC CTCAACTTGA AGATTCTGCT 240 CTCAAGATTA AGGAATACGC TGAAGAAATG AGAGGAGGGA GCGAGCTTCA GATCCTTGGC 2187 |||||||||| ||||||||| |||||| ||| |||||||||| |||||||||| |||||||||| CTCAAGATTA AGGAATACGT TGAAGAGATG AGAGGAGGGA GCGAGCTTCA GATCCTTGGC 300 CAGAAGAATA TCCCCTTATT TAAGTAG 2214 |||||||||| |||||||||| ||||||| CAGAAGAATA TCCCCTTATT TAAGTAG 327 hqPGS_C06HBa0250I21.1-33+_SGN-E544869- (1888 2214) ******************************************************************************** EST sequence 1 +strand 453 n (File: SGN-E308524+) 1 TCATCCAGGG AGAAGAATGG AACATGGGGG AGGAAGACAC CTTTGAGAAT CTCAAATTTT 61 TGAACTTGCG TCTACCGACT CTTTCCAAGT GGGAGGTTGG AGAGGAATCC TTCCCCAATC 121 TTGAGAAACT AAAACTGCAG GAATGTGGTA AGCTTGAGGA GATTCCACCT AGTTTTGGAG 181 ATATTTATTC ATTGAAATTT ATCGAAATTG TAAATAGTCC TCAACTTGAA GATTCTGCTC 241 TCAAGATTAA GGAATACGCT GAAGAGATGA GAGGAGGGAG CGAGCTTCAG ATCCTTGGCC 301 AGAAGAATAT CCCCTTATTT AAGTAGCATT ATGGTTGAAA AGTAGATTGT ACTTTGCAGG 361 GTACATTGTA TATGATTAAG AAAACTTTGT TGCAGTTATG AAATATTTTT GTGGATTTCT 421 CNNNNNAAAA AAAAAAAAAA AAAAAAAATA AAA Predicted gene structure (within gDNA segment 1217 to 2214): Exon 1 1889 2214 ( 326 n); cDNA 1 326 ( 326 n); score: 0.982 PPA cDNA 427 453 MATCH C06HBa0250I21.1-33+ SGN-E308524+ 0.982 326 0.720 C PGS_C06HBa0250I21.1-33+_SGN-E308524+ (1889 2214) Alignment (genomic DNA sequence = upper lines): TCATCCATGG AGAAGAATGG AACATGGGGG AGGAAGACAC CTTTGAGAAT CTCAAATTTT 1948 ||||||| || |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCATCCAGGG AGAAGAATGG AACATGGGGG AGGAAGACAC CTTTGAGAAT CTCAAATTTT 60 TGAACTTGCG TCTACCGACT CTTTCCAAGT GGGAGGTTGG AGAGGAATCC TTCCCCAATC 2008 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAACTTGCG TCTACCGACT CTTTCCAAGT GGGAGGTTGG AGAGGAATCC TTCCCCAATC 120 TTGAGAAATT AAAACTGCAG GAATGTGGTA AGTTTGAGGA GATTCCACCT AGTTTTGGAG 2068 |||||||| | |||||||||| |||||||||| || ||||||| |||||||||| |||||||||| TTGAGAAACT AAAACTGCAG GAATGTGGTA AGCTTGAGGA GATTCCACCT AGTTTTGGAG 180 ATATTTATTC ATTGAAATTT ATCAAAATTG TAAAGAGTCC TCAACTTGAA GATTCTGCTC 2128 |||||||||| |||||||||| ||| |||||| |||| ||||| |||||||||| |||||||||| ATATTTATTC ATTGAAATTT ATCGAAATTG TAAATAGTCC TCAACTTGAA GATTCTGCTC 240 TCAAGATTAA GGAATACGCT GAAGAAATGA GAGGAGGGAG CGAGCTTCAG ATCCTTGGCC 2188 |||||||||| |||||||||| ||||| |||| |||||||||| |||||||||| |||||||||| TCAAGATTAA GGAATACGCT GAAGAGATGA GAGGAGGGAG CGAGCTTCAG ATCCTTGGCC 300 AGAAGAATAT CCCCTTATTT AAGTAG 2214 |||||||||| |||||||||| |||||| AGAAGAATAT CCCCTTATTT AAGTAG 326 hqPGS_C06HBa0250I21.1-33+_SGN-E308524+ (1889 2214) Total number of EST alignments reported: 3 ________________________________________________________________________________ Predicted gene locations (1) in segment 1 to 2214: PGL 1 (+ strand): 1888 2214 AGS-1 (1888 2214) SCR (e 0.982) Exon 1 1888 2214 ( 327 n); score: 0.982 PGS (1888 2214) SGN-E544870+ PGS (1888 2214) SGN-E544869- PGS (1889 2214) SGN-E308524+ 3-phase translation of AGS-1 (+strand): . . . . . . 1888 ATCATCCATGGAGAAGAATGGAACATGGGGGAGGAAGACACCTTTGAGAATCTCAAATTT I I H G E E W N M G E E D T F E N L K F S S M E K N G T W G R K T P L R I S N F H P W R R M E H G G G R H L - E S Q I . . . . . . 1948 TTGAACTTGCGTCTACCGACTCTTTCCAAGTGGGAGGTTGGAGAGGAATCCTTCCCCAAT L N L R L P T L S K W E V G E E S F P N - T C V Y R L F P S G R L E R N P S P I F E L A S T D S F Q V G G W R G I L P Q . . . . . . 2008 CTTGAGAAATTAAAACTGCAGGAATGTGGTAAGTTTGAGGAGATTCCACCTAGTTTTGGA L E K L K L Q E C G K F E E I P P S F G L R N - N C R N V V S L R R F H L V L E S - E I K T A G M W - V - G D S T - F W . . . . . . 2068 GATATTTATTCATTGAAATTTATCAAAATTGTAAAGAGTCCTCAACTTGAAGATTCTGCT D I Y S L K F I K I V K S P Q L E D S A I F I H - N L S K L - R V L N L K I L L R Y L F I E I Y Q N C K E S S T - R F C . . . . . . 2128 CTCAAGATTAAGGAATACGCTGAAGAAATGAGAGGAGGGAGCGAGCTTCAGATCCTTGGC L K I K E Y A E E M R G G S E L Q I L G S R L R N T L K K - E E G A S F R S L A S Q D - G I R - R N E R R E R A S D P W . . . 2188 CAGAAGAATATCCCCTTATTTAAGTAG Q K N I P L F K - R R I S P Y L S P E E Y P L I - V Maximal non-overlapping open reading frames (>= 64 codons): >C06HBa0250I21.1-33+_PGL-1_AGS-1_PPS_1 (1888 2214) (frame '1'; 324 bp, 108 residues) 1 IIHGEEWNMG EEDTFENLKF LNLRLPTLSK WEVGEESFPN LEKLKLQECG KFEEIPPSFG 61 DIYSLKFIKI VKSPQLEDSA LKIKEYAEEM RGGSELQILG QKNIPLFK- 3-phase translation of AGS-1 (-strand): . . . . . . 2214 CTACTTAAATAAGGGGATATTCTTCTGGCCAAGGATCTGAAGCTCGCTCCCTCCTCTCAT L L K - G D I L L A K D L K L A P S S H Y L N K G I F F W P R I - S S L P P L I T - I R G Y S S G Q G S E A R S L L S . . . . . . 2154 TTCTTCAGCGTATTCCTTAATCTTGAGAGCAGAATCTTCAAGTTGAGGACTCTTTACAAT F F S V F L N L E S R I F K L R T L Y N S S A Y S L I L R A E S S S - G L F T I F L Q R I P - S - E Q N L Q V E D S L Q . . . . . . 2094 TTTGATAAATTTCAATGAATAAATATCTCCAAAACTAGGTGGAATCTCCTCAAACTTACC F D K F Q - I N I S K T R W N L L K L T L I N F N E - I S P K L G G I S S N L P F - - I S M N K Y L Q N - V E S P Q T Y . . . . . . 2034 ACATTCCTGCAGTTTTAATTTCTCAAGATTGGGGAAGGATTCCTCTCCAACCTCCCACTT T F L Q F - F L K I G E G F L S N L P L H S C S F N F S R L G K D S S P T S H L H I P A V L I S Q D W G R I P L Q P P T . . . . . . 1974 GGAAAGAGTCGGTAGACGCAAGTTCAAAAATTTGAGATTCTCAAAGGTGTCTTCCTCCCC G K S R - T Q V Q K F E I L K G V F L P E R V G R R K F K N L R F S K V S S S P W K E S V D A S S K I - D S Q R C L P P . . . 1914 CATGTTCCATTCTTCTCCATGGATGAT H V P F F S M D D M F H S S P W M P C S I L L H G - Maximal non-overlapping open reading frames (>= 64 codons): none ... finished at: Mon Aug 28 21:59:20 2006 ________________________________________________________________________________ Sequence 34: C06HBa0250I21.1-34, from 1 to 102, both strands analyzed. ... started at: Mon Aug 28 21:59:20 2006 EST library file: /tmp/cxgn-bacpublish-resources-v1XKpy/sgn_ests; matching gDNA +strand ... ... found all matches, elapsed seconds = 3 ... matches indexed, elapsed seconds = 3 HitsTableSize = 0 EST library file: /tmp/cxgn-bacpublish-resources-v1XKpy/sgn_ests; matching gDNA -strand ... ... found all matches, elapsed seconds = 4 ... matches indexed, elapsed seconds = 4 HitsTableSize = 0 No significant EST matches were found. ... finished at: Mon Aug 28 21:59:28 2006 ________________________________________________________________________________ Sequence 35: C06HBa0250I21.1-35, from 1 to 225, both strands analyzed. ... started at: Mon Aug 28 21:59:28 2006 EST library file: /tmp/cxgn-bacpublish-resources-v1XKpy/sgn_ests; matching gDNA +strand ... ... found all matches, elapsed seconds = 4 ... matches indexed, elapsed seconds = 4 HitsTableSize = 0 EST library file: /tmp/cxgn-bacpublish-resources-v1XKpy/sgn_ests; matching gDNA -strand ... ... found all matches, elapsed seconds = 4 ... matches indexed, elapsed seconds = 4 HitsTableSize = 0 No significant EST matches were found. ... finished at: Mon Aug 28 21:59:35 2006 ________________________________________________________________________________ Sequence 36: C06HBa0250I21.1-36, from 1 to 234, both strands analyzed. ... started at: Mon Aug 28 21:59:35 2006 EST library file: /tmp/cxgn-bacpublish-resources-v1XKpy/sgn_ests; matching gDNA +strand ... ... found all matches, elapsed seconds = 4 ... matches indexed, elapsed seconds = 4 HitsTableSize = 0 EST library file: /tmp/cxgn-bacpublish-resources-v1XKpy/sgn_ests; matching gDNA -strand ... ... found all matches, elapsed seconds = 4 ... matches indexed, elapsed seconds = 4 HitsTableSize = 0 No significant EST matches were found. ... finished at: Mon Aug 28 21:59:43 2006 ________________________________________________________________________________ Sequence 37: C06HBa0250I21.1-37, from 1 to 1383, both strands analyzed. ... started at: Mon Aug 28 21:59:43 2006 EST library file: /tmp/cxgn-bacpublish-resources-v1XKpy/sgn_ests; matching gDNA +strand ... ... found all matches, elapsed seconds = 4 ... matches indexed, elapsed seconds = 4 HitsTableSize = 0 EST library file: /tmp/cxgn-bacpublish-resources-v1XKpy/sgn_ests; matching gDNA -strand ... ... found all matches, elapsed seconds = 4 ... matches indexed, elapsed seconds = 4 HitsTableSize = 0 No significant EST matches were found. ... finished at: Mon Aug 28 21:59:51 2006 ________________________________________________________________________________ Sequence 38: C06HBa0250I21.1-38, from 1 to 2436, both strands analyzed. ... started at: Mon Aug 28 21:59:51 2006 EST library file: /tmp/cxgn-bacpublish-resources-v1XKpy/sgn_ests; matching gDNA +strand ... ... found all matches, elapsed seconds = 4 ... matches indexed, elapsed seconds = 4 HitsTableSize = 2 EST library file: /tmp/cxgn-bacpublish-resources-v1XKpy/sgn_ests; matching gDNA -strand ... ... found all matches, elapsed seconds = 4 ... matches indexed, elapsed seconds = 4 HitsTableSize = 1 ******************************************************************************** EST sequence 2 +strand 457 n (File: SGN-E544870+) 1 ATCATCCAGG GAGAAGAATG GAACATGGGG GAGGAAGACA CCTTTGAGAA TCTCAAATTT 61 TTGAACTTGC GTCTACCGAC TCTTTCCAAG TGGGAGGTTG GAGAGGAATC CTTCCCCAAT 121 CTTGAGAAAC TAAAACTGCA GGAATGTGGT AAGCTTGAGG AGATTCCACC TAGTTTTGGA 181 GATATTTATT CATTGAAATT TATCGAAATT GTAAATAGTC CTCAACTTGA AGATTCTGCT 241 CTCAAGATTA AGGAATACGC TGAAGAGATG AGAGGAGGGA GCGAGCTTCA GATCCTTGGC 301 CAGAAGAATA TCCCCTTATT TAAGTAGCAT TATGGTTGAA AAGTAGATTG TACTTTGCAG 361 GGTACATTGT ATATGATTAA GAAAACTTTG TTGCAGTTAT GAAATATTTT TGTGGATTTC 421 TCANNNNANA AAAAAAAAAA AAAAAAAAAA AAAAAAA Predicted gene structure (within gDNA segment 1675 to 2436): Exon 1 2275 2436 ( 162 n); cDNA 1 158 ( 158 n); score: 0.932 PPA cDNA 428 457 MATCH C06HBa0250I21.1-38+ SGN-E544870+ 0.932 162 0.354 C PGS_C06HBa0250I21.1-38+_SGN-E544870+ (2275 2436) Alignment (genomic DNA sequence = upper lines): ATCATCCAGG GAGAAGAATG GAACATGGGG GAGGAAGACA CCTTTGAGAA TCTCAAATTT 2334 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCATCCAGG GAGAAGAATG GAACATGGGG GAGGAAGACA CCTTTGAGAA TCTCAAATTT 60 TTGAACTTGC GTCTAGCGAC TCTTTCCAAG TGGGAGGTTG GAGAGGAATC CTTCCCCAAT 2394 |||||||||| ||||| |||| |||||||||| |||||||||| |||||||||| |||||||||| TTGAACTTGC GTCTACCGAC TCTTTCCAAG TGGGAGGTTG GAGAGGAATC CTTCCCCAAT 120 CTTGAGAAGT TAAAACTGCA GGGATGTCAG TCCTCAACTT GA 2436 |||||||| |||||||||| || |||| | | | ||| || CTTGAGAAAC TAAAACTGCA GGAATGT--G --GTAAGCTT GA 158 hqPGS_C06HBa0250I21.1-38+_SGN-E544870+ (2275 2436) ******************************************************************************** EST sequence 3 -strand 457 n (File: SGN-E544869-) 1 ATCATCCAGG GAGAAGAATG GAACATGGGG GAGGAAGACA CCTTTGAGAA TCTCAAATTT 61 TTGAAGTGGG GTTTACGGAC TTTTTTCAAG TGGGAGGTTG GAGAGAAATC CTTCCCCAAT 121 CTTGAGAAAC TAAAACTGCA GGAATGTGGT AAGCTTGAGG AGATTCCCCC TAGTTTTGGA 181 GATATTTATT CATTGAAATT TATGGAAATT GTAAATAGTC CTCAACTTGA AGATTCTGCT 241 CTCAAGATTA AGGAATACGT TGAAGAGATG AGAGGAGGGA GCGAGCTTCA GATCCTTGGC 301 CAGAAGAATA TCCCCTTATT TAAGTAGCAT TAGGGTTGAA AAGTAGATTG TACTTTGCAG 361 GGTACATTGT ATATGATTAA GAAAACTTTG TTGCAGTTAT GAAATATTTT TGTGGATTTC 421 TCAAAAAAAA AAAAAAAAAA AAAAAAAAAA AAAGGAA Predicted gene structure (within gDNA segment 1665 to 2436): Exon 1 2275 2436 ( 162 n); cDNA 1 158 ( 158 n); score: 0.883 PPA cDNA 423 454 MATCH C06HBa0250I21.1-38+ SGN-E544869- 0.883 162 0.354 C PGS_C06HBa0250I21.1-38+_SGN-E544869- (2275 2436) Alignment (genomic DNA sequence = upper lines): ATCATCCAGG GAGAAGAATG GAACATGGGG GAGGAAGACA CCTTTGAGAA TCTCAAATTT 2334 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCATCCAGG GAGAAGAATG GAACATGGGG GAGGAAGACA CCTTTGAGAA TCTCAAATTT 60 TTGAACTTGC GTCTAGCGAC TCTTTCCAAG TGGGAGGTTG GAGAGGAATC CTTCCCCAAT 2394 ||||| | | || || ||| | ||| |||| |||||||||| ||||| |||| |||||||||| TTGAAGTGGG GTTTACGGAC TTTTTTCAAG TGGGAGGTTG GAGAGAAATC CTTCCCCAAT 120 CTTGAGAAGT TAAAACTGCA GGGATGTCAG TCCTCAACTT GA 2436 |||||||| |||||||||| || |||| | | | ||| || CTTGAGAAAC TAAAACTGCA GGAATGT--G --GTAAGCTT GA 158 hqPGS_C06HBa0250I21.1-38+_SGN-E544869- (2275 2436) ******************************************************************************** EST sequence 1 +strand 453 n (File: SGN-E308524+) 1 TCATCCAGGG AGAAGAATGG AACATGGGGG AGGAAGACAC CTTTGAGAAT CTCAAATTTT 61 TGAACTTGCG TCTACCGACT CTTTCCAAGT GGGAGGTTGG AGAGGAATCC TTCCCCAATC 121 TTGAGAAACT AAAACTGCAG GAATGTGGTA AGCTTGAGGA GATTCCACCT AGTTTTGGAG 181 ATATTTATTC ATTGAAATTT ATCGAAATTG TAAATAGTCC TCAACTTGAA GATTCTGCTC 241 TCAAGATTAA GGAATACGCT GAAGAGATGA GAGGAGGGAG CGAGCTTCAG ATCCTTGGCC 301 AGAAGAATAT CCCCTTATTT AAGTAGCATT ATGGTTGAAA AGTAGATTGT ACTTTGCAGG 361 GTACATTGTA TATGATTAAG AAAACTTTGT TGCAGTTATG AAATATTTTT GTGGATTTCT 421 CNNNNNAAAA AAAAAAAAAA AAAAAAAATA AAA Predicted gene structure (within gDNA segment 1676 to 2436): Exon 1 2276 2436 ( 161 n); cDNA 1 157 ( 157 n); score: 0.932 PPA cDNA 427 453 MATCH C06HBa0250I21.1-38+ SGN-E308524+ 0.932 161 0.355 C PGS_C06HBa0250I21.1-38+_SGN-E308524+ (2276 2436) Alignment (genomic DNA sequence = upper lines): TCATCCAGGG AGAAGAATGG AACATGGGGG AGGAAGACAC CTTTGAGAAT CTCAAATTTT 2335 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCATCCAGGG AGAAGAATGG AACATGGGGG AGGAAGACAC CTTTGAGAAT CTCAAATTTT 60 TGAACTTGCG TCTAGCGACT CTTTCCAAGT GGGAGGTTGG AGAGGAATCC TTCCCCAATC 2395 |||||||||| |||| ||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAACTTGCG TCTACCGACT CTTTCCAAGT GGGAGGTTGG AGAGGAATCC TTCCCCAATC 120 TTGAGAAGTT AAAACTGCAG GGATGTCAGT CCTCAACTTG A 2436 ||||||| | |||||||||| | |||| | | | |||| | TTGAGAAACT AAAACTGCAG GAATGT--G- -GTAAGCTTG A 157 hqPGS_C06HBa0250I21.1-38+_SGN-E308524+ (2276 2436) Total number of EST alignments reported: 3 ________________________________________________________________________________ Predicted gene locations (1) in segment 1 to 2436: PGL 1 (+ strand): 2275 2436 AGS-1 (2275 2436) SCR (e 0.932) Exon 1 2275 2436 ( 162 n); score: 0.932 PGS (2275 2436) SGN-E544870+ PGS (2275 2436) SGN-E544869- PGS (2276 2436) SGN-E308524+ 3-phase translation of AGS-1 (+strand): . . . . . . 2275 ATCATCCAGGGAGAAGAATGGAACATGGGGGAGGAAGACACCTTTGAGAATCTCAAATTT I I Q G E E W N M G E E D T F E N L K F S S R E K N G T W G R K T P L R I S N F H P G R R M E H G G G R H L - E S Q I . . . . . . 2335 TTGAACTTGCGTCTAGCGACTCTTTCCAAGTGGGAGGTTGGAGAGGAATCCTTCCCCAAT L N L R L A T L S K W E V G E E S F P N - T C V - R L F P S G R L E R N P S P I F E L A S S D S F Q V G G W R G I L P Q . . . . . 2395 CTTGAGAAGTTAAAACTGCAGGGATGTCAGTCCTCAACTTGA L E K L K L Q G C Q S S T - L R S - N C R D V S P Q L S - E V K T A G M S V L N L Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-1 (-strand): . . . . . . 2436 TCAAGTTGAGGACTGACATCCCTGCAGTTTTAACTTCTCAAGATTGGGGAAGGATTCCTC S S - G L T S L Q F - L L K I G E G F L Q V E D - H P C S F N F S R L G K D S S K L R T D I P A V L T S Q D W G R I P . . . . . . 2376 TCCAACCTCCCACTTGGAAAGAGTCGCTAGACGCAAGTTCAAAAATTTGAGATTCTCAAA S N L P L G K S R - T Q V Q K F E I L K P T S H L E R V A R R K F K N L R F S K L Q P P T W K E S L D A S S K I - D S Q . . . . . 2316 GGTGTCTTCCTCCCCCATGTTCCATTCTTCTCCCTGGATGAT G V F L P H V P F F S L D D V S S S P M F H S S P W M R C L P P P C S I L L P G - Maximal non-overlapping open reading frames (>= 64 codons): none ... finished at: Mon Aug 28 21:59:59 2006 ________________________________________________________________________________ Sequence 39: C06HBa0250I21.1-39, from 1 to 108, both strands analyzed. ... started at: Mon Aug 28 21:59:59 2006 EST library file: /tmp/cxgn-bacpublish-resources-v1XKpy/sgn_ests; matching gDNA +strand ... ... found all matches, elapsed seconds = 4 ... matches indexed, elapsed seconds = 4 HitsTableSize = 0 EST library file: /tmp/cxgn-bacpublish-resources-v1XKpy/sgn_ests; matching gDNA -strand ... ... found all matches, elapsed seconds = 4 ... matches indexed, elapsed seconds = 4 HitsTableSize = 0 No significant EST matches were found. ... finished at: Mon Aug 28 22:00:07 2006 ________________________________________________________________________________ Sequence 40: C06HBa0250I21.1-40, from 1 to 534, both strands analyzed. ... started at: Mon Aug 28 22:00:07 2006 EST library file: /tmp/cxgn-bacpublish-resources-v1XKpy/sgn_ests; matching gDNA +strand ... ... found all matches, elapsed seconds = 4 ... matches indexed, elapsed seconds = 4 HitsTableSize = 0 EST library file: /tmp/cxgn-bacpublish-resources-v1XKpy/sgn_ests; matching gDNA -strand ... ... found all matches, elapsed seconds = 3 ... matches indexed, elapsed seconds = 4 HitsTableSize = 0 No significant EST matches were found. ... finished at: Mon Aug 28 22:00:15 2006 ________________________________________________________________________________ Sequence 41: C06HBa0250I21.1-41, from 1 to 138, both strands analyzed. ... started at: Mon Aug 28 22:00:15 2006 EST library file: /tmp/cxgn-bacpublish-resources-v1XKpy/sgn_ests; matching gDNA +strand ... ... found all matches, elapsed seconds = 3 ... matches indexed, elapsed seconds = 3 HitsTableSize = 0 EST library file: /tmp/cxgn-bacpublish-resources-v1XKpy/sgn_ests; matching gDNA -strand ... ... found all matches, elapsed seconds = 4 ... matches indexed, elapsed seconds = 4 HitsTableSize = 0 No significant EST matches were found. ... finished at: Mon Aug 28 22:00:23 2006 ________________________________________________________________________________ Sequence 42: C06HBa0250I21.1-42, from 1 to 129, both strands analyzed. ... started at: Mon Aug 28 22:00:23 2006 EST library file: /tmp/cxgn-bacpublish-resources-v1XKpy/sgn_ests; matching gDNA +strand ... ... found all matches, elapsed seconds = 4 ... matches indexed, elapsed seconds = 4 HitsTableSize = 0 EST library file: /tmp/cxgn-bacpublish-resources-v1XKpy/sgn_ests; matching gDNA -strand ... ... found all matches, elapsed seconds = 4 ... matches indexed, elapsed seconds = 4 HitsTableSize = 0 No significant EST matches were found. ... finished at: Mon Aug 28 22:00:31 2006 ________________________________________________________________________________ Sequence 43: C06HBa0250I21.1-43, from 1 to 279, both strands analyzed. ... started at: Mon Aug 28 22:00:31 2006 EST library file: /tmp/cxgn-bacpublish-resources-v1XKpy/sgn_ests; matching gDNA +strand ... ... found all matches, elapsed seconds = 4 ... matches indexed, elapsed seconds = 4 HitsTableSize = 0 EST library file: /tmp/cxgn-bacpublish-resources-v1XKpy/sgn_ests; matching gDNA -strand ... ... found all matches, elapsed seconds = 4 ... matches indexed, elapsed seconds = 4 HitsTableSize = 0 No significant EST matches were found. ... finished at: Mon Aug 28 22:00:39 2006 ________________________________________________________________________________ Sequence 44: C06HBa0250I21.1-44, from 1 to 66, both strands analyzed. ... started at: Mon Aug 28 22:00:39 2006 EST library file: /tmp/cxgn-bacpublish-resources-v1XKpy/sgn_ests; matching gDNA +strand ... ... found all matches, elapsed seconds = 5 ... matches indexed, elapsed seconds = 5 HitsTableSize = 0 EST library file: /tmp/cxgn-bacpublish-resources-v1XKpy/sgn_ests; matching gDNA -strand ... ... found all matches, elapsed seconds = 4 ... matches indexed, elapsed seconds = 4 HitsTableSize = 0 No significant EST matches were found. ... finished at: Mon Aug 28 22:00:48 2006 ________________________________________________________________________________ Sequence 45: C06HBa0250I21.1-45, from 1 to 3501, both strands analyzed. ... started at: Mon Aug 28 22:00:48 2006 EST library file: /tmp/cxgn-bacpublish-resources-v1XKpy/sgn_ests; matching gDNA +strand ... ... found all matches, elapsed seconds = 5 ... matches indexed, elapsed seconds = 5 HitsTableSize = 2 EST library file: /tmp/cxgn-bacpublish-resources-v1XKpy/sgn_ests; matching gDNA -strand ... ... found all matches, elapsed seconds = 4 ... matches indexed, elapsed seconds = 4 HitsTableSize = 1 ******************************************************************************** EST sequence 2 +strand 457 n (File: SGN-E544870+) 1 ATCATCCAGG GAGAAGAATG GAACATGGGG GAGGAAGACA CCTTTGAGAA TCTCAAATTT 61 TTGAACTTGC GTCTACCGAC TCTTTCCAAG TGGGAGGTTG GAGAGGAATC CTTCCCCAAT 121 CTTGAGAAAC TAAAACTGCA GGAATGTGGT AAGCTTGAGG AGATTCCACC TAGTTTTGGA 181 GATATTTATT CATTGAAATT TATCGAAATT GTAAATAGTC CTCAACTTGA AGATTCTGCT 241 CTCAAGATTA AGGAATACGC TGAAGAGATG AGAGGAGGGA GCGAGCTTCA GATCCTTGGC 301 CAGAAGAATA TCCCCTTATT TAAGTAGCAT TATGGTTGAA AAGTAGATTG TACTTTGCAG 361 GGTACATTGT ATATGATTAA GAAAACTTTG TTGCAGTTAT GAAATATTTT TGTGGATTTC 421 TCANNNNANA AAAAAAAAAA AAAAAAAAAA AAAAAAA Predicted gene structure (within gDNA segment 2575 to 3501): Exon 1 3175 3501 ( 327 n); cDNA 1 327 ( 327 n); score: 0.979 PPA cDNA 428 457 MATCH C06HBa0250I21.1-45+ SGN-E544870+ 0.979 327 0.716 C PGS_C06HBa0250I21.1-45+_SGN-E544870+ (3175 3501) Alignment (genomic DNA sequence = upper lines): ATCATCCAGG GAGAAGAATG GAACATGGGG GAGGAAGACA CCTTTGAGAA TCTCAAATTT 3234 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCATCCAGG GAGAAGAATG GAACATGGGG GAGGAAGACA CCTTTGAGAA TCTCAAATTT 60 TTGAACTTGC GTCTACCGAC TCTTTCCAAG TGGGAGGTTG GAGAGGAATC CTTCCCCAAT 3294 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGAACTTGC GTCTACCGAC TCTTTCCAAG TGGGAGGTTG GAGAGGAATC CTTCCCCAAT 120 CTTGAGAAAT TAAAACTGCG GGGATGTGGT GAGCTTGAGG AGATTCCACC TAGTTTTGGA 3354 ||||||||| ||||||||| || ||||||| ||||||||| |||||||||| |||||||||| CTTGAGAAAC TAAAACTGCA GGAATGTGGT AAGCTTGAGG AGATTCCACC TAGTTTTGGA 180 GATATTTATT CATTGAAATT TATCAAAATT GTAAAGAGTC CTCAACTTGA AGATTCTGCT 3414 |||||||||| |||||||||| |||| ||||| ||||| |||| |||||||||| |||||||||| GATATTTATT CATTGAAATT TATCGAAATT GTAAATAGTC CTCAACTTGA AGATTCTGCT 240 CTCAAGATTA AGGAATACGC TGAAGAGATG AGAGGAGGGG GCGAGCTTCA GATCCTTGGC 3474 |||||||||| |||||||||| |||||||||| ||||||||| |||||||||| |||||||||| CTCAAGATTA AGGAATACGC TGAAGAGATG AGAGGAGGGA GCGAGCTTCA GATCCTTGGC 300 CAGAAGAATA TCCCCTTATT TAAGTAG 3501 |||||||||| |||||||||| ||||||| CAGAAGAATA TCCCCTTATT TAAGTAG 327 hqPGS_C06HBa0250I21.1-45+_SGN-E544870+ (3175 3501) ******************************************************************************** EST sequence 3 -strand 457 n (File: SGN-E544869-) 1 ATCATCCAGG GAGAAGAATG GAACATGGGG GAGGAAGACA CCTTTGAGAA TCTCAAATTT 61 TTGAAGTGGG GTTTACGGAC TTTTTTCAAG TGGGAGGTTG GAGAGAAATC CTTCCCCAAT 121 CTTGAGAAAC TAAAACTGCA GGAATGTGGT AAGCTTGAGG AGATTCCCCC TAGTTTTGGA 181 GATATTTATT CATTGAAATT TATGGAAATT GTAAATAGTC CTCAACTTGA AGATTCTGCT 241 CTCAAGATTA AGGAATACGT TGAAGAGATG AGAGGAGGGA GCGAGCTTCA GATCCTTGGC 301 CAGAAGAATA TCCCCTTATT TAAGTAGCAT TAGGGTTGAA AAGTAGATTG TACTTTGCAG 361 GGTACATTGT ATATGATTAA GAAAACTTTG TTGCAGTTAT GAAATATTTT TGTGGATTTC 421 TCAAAAAAAA AAAAAAAAAA AAAAAAAAAA AAAGGAA Predicted gene structure (within gDNA segment 2565 to 3501): Exon 1 3175 3501 ( 327 n); cDNA 1 327 ( 327 n); score: 0.945 PPA cDNA 423 454 MATCH C06HBa0250I21.1-45+ SGN-E544869- 0.945 327 0.716 C PGS_C06HBa0250I21.1-45+_SGN-E544869- (3175 3501) Alignment (genomic DNA sequence = upper lines): ATCATCCAGG GAGAAGAATG GAACATGGGG GAGGAAGACA CCTTTGAGAA TCTCAAATTT 3234 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCATCCAGG GAGAAGAATG GAACATGGGG GAGGAAGACA CCTTTGAGAA TCTCAAATTT 60 TTGAACTTGC GTCTACCGAC TCTTTCCAAG TGGGAGGTTG GAGAGGAATC CTTCCCCAAT 3294 ||||| | | || ||| ||| | ||| |||| |||||||||| ||||| |||| |||||||||| TTGAAGTGGG GTTTACGGAC TTTTTTCAAG TGGGAGGTTG GAGAGAAATC CTTCCCCAAT 120 CTTGAGAAAT TAAAACTGCG GGGATGTGGT GAGCTTGAGG AGATTCCACC TAGTTTTGGA 3354 ||||||||| ||||||||| || ||||||| ||||||||| ||||||| || |||||||||| CTTGAGAAAC TAAAACTGCA GGAATGTGGT AAGCTTGAGG AGATTCCCCC TAGTTTTGGA 180 GATATTTATT CATTGAAATT TATCAAAATT GTAAAGAGTC CTCAACTTGA AGATTCTGCT 3414 |||||||||| |||||||||| ||| ||||| ||||| |||| |||||||||| |||||||||| GATATTTATT CATTGAAATT TATGGAAATT GTAAATAGTC CTCAACTTGA AGATTCTGCT 240 CTCAAGATTA AGGAATACGC TGAAGAGATG AGAGGAGGGG GCGAGCTTCA GATCCTTGGC 3474 |||||||||| ||||||||| |||||||||| ||||||||| |||||||||| |||||||||| CTCAAGATTA AGGAATACGT TGAAGAGATG AGAGGAGGGA GCGAGCTTCA GATCCTTGGC 300 CAGAAGAATA TCCCCTTATT TAAGTAG 3501 |||||||||| |||||||||| ||||||| CAGAAGAATA TCCCCTTATT TAAGTAG 327 hqPGS_C06HBa0250I21.1-45+_SGN-E544869- (3175 3501) ******************************************************************************** EST sequence 1 +strand 453 n (File: SGN-E308524+) 1 TCATCCAGGG AGAAGAATGG AACATGGGGG AGGAAGACAC CTTTGAGAAT CTCAAATTTT 61 TGAACTTGCG TCTACCGACT CTTTCCAAGT GGGAGGTTGG AGAGGAATCC TTCCCCAATC 121 TTGAGAAACT AAAACTGCAG GAATGTGGTA AGCTTGAGGA GATTCCACCT AGTTTTGGAG 181 ATATTTATTC ATTGAAATTT ATCGAAATTG TAAATAGTCC TCAACTTGAA GATTCTGCTC 241 TCAAGATTAA GGAATACGCT GAAGAGATGA GAGGAGGGAG CGAGCTTCAG ATCCTTGGCC 301 AGAAGAATAT CCCCTTATTT AAGTAGCATT ATGGTTGAAA AGTAGATTGT ACTTTGCAGG 361 GTACATTGTA TATGATTAAG AAAACTTTGT TGCAGTTATG AAATATTTTT GTGGATTTCT 421 CNNNNNAAAA AAAAAAAAAA AAAAAAAATA AAA Predicted gene structure (within gDNA segment 2576 to 3501): Exon 1 3176 3501 ( 326 n); cDNA 1 326 ( 326 n); score: 0.979 PPA cDNA 427 453 MATCH C06HBa0250I21.1-45+ SGN-E308524+ 0.979 326 0.720 C PGS_C06HBa0250I21.1-45+_SGN-E308524+ (3176 3501) Alignment (genomic DNA sequence = upper lines): TCATCCAGGG AGAAGAATGG AACATGGGGG AGGAAGACAC CTTTGAGAAT CTCAAATTTT 3235 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCATCCAGGG AGAAGAATGG AACATGGGGG AGGAAGACAC CTTTGAGAAT CTCAAATTTT 60 TGAACTTGCG TCTACCGACT CTTTCCAAGT GGGAGGTTGG AGAGGAATCC TTCCCCAATC 3295 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAACTTGCG TCTACCGACT CTTTCCAAGT GGGAGGTTGG AGAGGAATCC TTCCCCAATC 120 TTGAGAAATT AAAACTGCGG GGATGTGGTG AGCTTGAGGA GATTCCACCT AGTTTTGGAG 3355 |||||||| | |||||||| | | ||||||| |||||||||| |||||||||| |||||||||| TTGAGAAACT AAAACTGCAG GAATGTGGTA AGCTTGAGGA GATTCCACCT AGTTTTGGAG 180 ATATTTATTC ATTGAAATTT ATCAAAATTG TAAAGAGTCC TCAACTTGAA GATTCTGCTC 3415 |||||||||| |||||||||| ||| |||||| |||| ||||| |||||||||| |||||||||| ATATTTATTC ATTGAAATTT ATCGAAATTG TAAATAGTCC TCAACTTGAA GATTCTGCTC 240 TCAAGATTAA GGAATACGCT GAAGAGATGA GAGGAGGGGG CGAGCTTCAG ATCCTTGGCC 3475 |||||||||| |||||||||| |||||||||| |||||||| | |||||||||| |||||||||| TCAAGATTAA GGAATACGCT GAAGAGATGA GAGGAGGGAG CGAGCTTCAG ATCCTTGGCC 300 AGAAGAATAT CCCCTTATTT AAGTAG 3501 |||||||||| |||||||||| |||||| AGAAGAATAT CCCCTTATTT AAGTAG 326 hqPGS_C06HBa0250I21.1-45+_SGN-E308524+ (3176 3501) Total number of EST alignments reported: 3 ________________________________________________________________________________ Predicted gene locations (1) in segment 1 to 3501: PGL 1 (+ strand): 3175 3501 AGS-1 (3175 3501) SCR (e 0.979) Exon 1 3175 3501 ( 327 n); score: 0.979 PGS (3175 3501) SGN-E544870+ PGS (3175 3501) SGN-E544869- PGS (3176 3501) SGN-E308524+ 3-phase translation of AGS-1 (+strand): . . . . . . 3175 ATCATCCAGGGAGAAGAATGGAACATGGGGGAGGAAGACACCTTTGAGAATCTCAAATTT I I Q G E E W N M G E E D T F E N L K F S S R E K N G T W G R K T P L R I S N F H P G R R M E H G G G R H L - E S Q I . . . . . . 3235 TTGAACTTGCGTCTACCGACTCTTTCCAAGTGGGAGGTTGGAGAGGAATCCTTCCCCAAT L N L R L P T L S K W E V G E E S F P N - T C V Y R L F P S G R L E R N P S P I F E L A S T D S F Q V G G W R G I L P Q . . . . . . 3295 CTTGAGAAATTAAAACTGCGGGGATGTGGTGAGCTTGAGGAGATTCCACCTAGTTTTGGA L E K L K L R G C G E L E E I P P S F G L R N - N C G D V V S L R R F H L V L E S - E I K T A G M W - A - G D S T - F W . . . . . . 3355 GATATTTATTCATTGAAATTTATCAAAATTGTAAAGAGTCCTCAACTTGAAGATTCTGCT D I Y S L K F I K I V K S P Q L E D S A I F I H - N L S K L - R V L N L K I L L R Y L F I E I Y Q N C K E S S T - R F C . . . . . . 3415 CTCAAGATTAAGGAATACGCTGAAGAGATGAGAGGAGGGGGCGAGCTTCAGATCCTTGGC L K I K E Y A E E M R G G G E L Q I L G S R L R N T L K R - E E G A S F R S L A S Q D - G I R - R D E R R G R A S D P W . . . 3475 CAGAAGAATATCCCCTTATTTAAGTAG Q K N I P L F K - R R I S P Y L S P E E Y P L I - V Maximal non-overlapping open reading frames (>= 64 codons): >C06HBa0250I21.1-45+_PGL-1_AGS-1_PPS_1 (3175 3501) (frame '1'; 324 bp, 108 residues) 1 IIQGEEWNMG EEDTFENLKF LNLRLPTLSK WEVGEESFPN LEKLKLRGCG ELEEIPPSFG 61 DIYSLKFIKI VKSPQLEDSA LKIKEYAEEM RGGGELQILG QKNIPLFK- 3-phase translation of AGS-1 (-strand): . . . . . . 3501 CTACTTAAATAAGGGGATATTCTTCTGGCCAAGGATCTGAAGCTCGCCCCCTCCTCTCAT L L K - G D I L L A K D L K L A P S S H Y L N K G I F F W P R I - S S P P P L I T - I R G Y S S G Q G S E A R P L L S . . . . . . 3441 CTCTTCAGCGTATTCCTTAATCTTGAGAGCAGAATCTTCAAGTTGAGGACTCTTTACAAT L F S V F L N L E S R I F K L R T L Y N S S A Y S L I L R A E S S S - G L F T I S L Q R I P - S - E Q N L Q V E D S L Q . . . . . . 3381 TTTGATAAATTTCAATGAATAAATATCTCCAAAACTAGGTGGAATCTCCTCAAGCTCACC F D K F Q - I N I S K T R W N L L K L T L I N F N E - I S P K L G G I S S S S P F - - I S M N K Y L Q N - V E S P Q A H . . . . . . 3321 ACATCCCCGCAGTTTTAATTTCTCAAGATTGGGGAAGGATTCCTCTCCAACCTCCCACTT T S P Q F - F L K I G E G F L S N L P L H P R S F N F S R L G K D S S P T S H L H I P A V L I S Q D W G R I P L Q P P T . . . . . . 3261 GGAAAGAGTCGGTAGACGCAAGTTCAAAAATTTGAGATTCTCAAAGGTGTCTTCCTCCCC G K S R - T Q V Q K F E I L K G V F L P E R V G R R K F K N L R F S K V S S S P W K E S V D A S S K I - D S Q R C L P P . . . 3201 CATGTTCCATTCTTCTCCCTGGATGAT H V P F F S L D D M F H S S P W M P C S I L L P G - Maximal non-overlapping open reading frames (>= 64 codons): none ... finished at: Mon Aug 28 22:00:57 2006 ________________________________________________________________________________ Sequence 46: C06HBa0250I21.1-46, from 1 to 198, both strands analyzed. ... started at: Mon Aug 28 22:00:57 2006 EST library file: /tmp/cxgn-bacpublish-resources-v1XKpy/sgn_ests; matching gDNA +strand ... ... found all matches, elapsed seconds = 4 ... matches indexed, elapsed seconds = 4 HitsTableSize = 0 EST library file: /tmp/cxgn-bacpublish-resources-v1XKpy/sgn_ests; matching gDNA -strand ... ... found all matches, elapsed seconds = 4 ... matches indexed, elapsed seconds = 4 HitsTableSize = 0 No significant EST matches were found. ... finished at: Mon Aug 28 22:01:05 2006 ________________________________________________________________________________ Sequence 47: C06HBa0250I21.1-47, from 1 to 387, both strands analyzed. ... started at: Mon Aug 28 22:01:05 2006 EST library file: /tmp/cxgn-bacpublish-resources-v1XKpy/sgn_ests; matching gDNA +strand ... ... found all matches, elapsed seconds = 4 ... matches indexed, elapsed seconds = 4 HitsTableSize = 0 EST library file: /tmp/cxgn-bacpublish-resources-v1XKpy/sgn_ests; matching gDNA -strand ... ... found all matches, elapsed seconds = 3 ... matches indexed, elapsed seconds = 3 HitsTableSize = 0 No significant EST matches were found. ... finished at: Mon Aug 28 22:01:13 2006 ________________________________________________________________________________ Sequence 48: C06HBa0250I21.1-48, from 1 to 1989, both strands analyzed. ... started at: Mon Aug 28 22:01:13 2006 EST library file: /tmp/cxgn-bacpublish-resources-v1XKpy/sgn_ests; matching gDNA +strand ... ... found all matches, elapsed seconds = 4 ... matches indexed, elapsed seconds = 4 HitsTableSize = 0 EST library file: /tmp/cxgn-bacpublish-resources-v1XKpy/sgn_ests; matching gDNA -strand ... ... found all matches, elapsed seconds = 4 ... matches indexed, elapsed seconds = 4 HitsTableSize = 0 No significant EST matches were found. ... finished at: Mon Aug 28 22:01:20 2006 ________________________________________________________________________________ Sequence 49: C06HBa0250I21.1-49, from 1 to 1215, both strands analyzed. ... started at: Mon Aug 28 22:01:20 2006 EST library file: /tmp/cxgn-bacpublish-resources-v1XKpy/sgn_ests; matching gDNA +strand ... ... found all matches, elapsed seconds = 4 ... matches indexed, elapsed seconds = 4 HitsTableSize = 2 EST library file: /tmp/cxgn-bacpublish-resources-v1XKpy/sgn_ests; matching gDNA -strand ... ... found all matches, elapsed seconds = 4 ... matches indexed, elapsed seconds = 4 HitsTableSize = 1 ******************************************************************************** EST sequence 2 +strand 622 n (File: SGN-E545662+) 1 GATGATAACG AAAGATTTTT GAGGAATGCT TATGGTCTTG AATATCCAGA ACCTAATGTC 61 ACATTTTCAC TATGTCGAGG AAGTTGGTCT TCACCAGCGC TAAGGATCTA TAGACCAGAT 121 GAAGTCGCGA ACGAGCTTGA GAGAGCGAAA ATGGAGTATT TGGAAGCTTC GGTAGGAGTA 181 ACAAGTAAGA AGAAGATAAT GGTGCCCAAG CTAATGCAAT GGCACATGAA AGACTTTGCG 241 GATGATATGG AGTCTCTAAT AGAATGGATG TATAGTCAAT TACCAAGCTC GTGCTCTTTG 301 AAAAAGTCGA TGATGGATTG TCTTGATGCG GGGGAAAAGA AATATTTATC GCTAGCTAAG 361 ATGATAGAGG TTCAACCTTA TGCTTCAGAA TTTCGATACT TACTCCCACT ATGAACATAA 421 CAATTGTTTG CGCGTAGTTG ATTGAACTTT AATAATCTTA TTATTTTATT TGTTTGTTTT 481 TAAAGGTCTG AATTGTAATC ATTCGGACCT AAAATCCTCA AAAAGGAAAA TAGAGGTGTT 541 ACTTTAGATG GCTCAAAATT TCGATACTTG TTCCCCCTTA CGAAGTATTT ATTTGTTTGG 601 CAATTAATTA ATAGTTGTTA AA Predicted gene structure (within gDNA segment 202 to 1215): Exon 1 802 1215 ( 414 n); cDNA 1 414 ( 414 n); score: 1.000 MATCH C06HBa0250I21.1-49+ SGN-E545662+ 1.000 414 0.666 C PGS_C06HBa0250I21.1-49+_SGN-E545662+ (802 1215) Alignment (genomic DNA sequence = upper lines): GATGATAACG AAAGATTTTT GAGGAATGCT TATGGTCTTG AATATCCAGA ACCTAATGTC 861 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATGATAACG AAAGATTTTT GAGGAATGCT TATGGTCTTG AATATCCAGA ACCTAATGTC 60 ACATTTTCAC TATGTCGAGG AAGTTGGTCT TCACCAGCGC TAAGGATCTA TAGACCAGAT 921 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACATTTTCAC TATGTCGAGG AAGTTGGTCT TCACCAGCGC TAAGGATCTA TAGACCAGAT 120 GAAGTCGCGA ACGAGCTTGA GAGAGCGAAA ATGGAGTATT TGGAAGCTTC GGTAGGAGTA 981 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAAGTCGCGA ACGAGCTTGA GAGAGCGAAA ATGGAGTATT TGGAAGCTTC GGTAGGAGTA 180 ACAAGTAAGA AGAAGATAAT GGTGCCCAAG CTAATGCAAT GGCACATGAA AGACTTTGCG 1041 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACAAGTAAGA AGAAGATAAT GGTGCCCAAG CTAATGCAAT GGCACATGAA AGACTTTGCG 240 GATGATATGG AGTCTCTAAT AGAATGGATG TATAGTCAAT TACCAAGCTC GTGCTCTTTG 1101 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATGATATGG AGTCTCTAAT AGAATGGATG TATAGTCAAT TACCAAGCTC GTGCTCTTTG 300 AAAAAGTCGA TGATGGATTG TCTTGATGCG GGGGAAAAGA AATATTTATC GCTAGCTAAG 1161 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAAAGTCGA TGATGGATTG TCTTGATGCG GGGGAAAAGA AATATTTATC GCTAGCTAAG 360 ATGATAGAGG TTCAACCTTA TGCTTCAGAA TTTCGATACT TACTCCCACT ATGA 1215 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||| ATGATAGAGG TTCAACCTTA TGCTTCAGAA TTTCGATACT TACTCCCACT ATGA 414 hqPGS_C06HBa0250I21.1-49+_SGN-E545662+ (802 1215) ******************************************************************************** EST sequence 1 +strand 639 n (File: SGN-E310582+) 1 ATGATAACGA AAGATTTTTG AGGAATGCTT ATGGTCTTGA ATATCCAGAA CCTAATGTCA 61 CATTTTCACT ATGTCGAGGA AGTTGGTCTT CACCAGCGCT AAGGATCTAT AGACCAGATG 121 AAGTCGCGAA CGAGCTTGAG AGAGCGAAAA TGGAGTATTT GGAAGCTTCG GTAGGAGTAA 181 CAAGTAAGAA GAAGATAATG GTGCCCAAGC TAATGCAATG GCACATGAAA GACTTTGCGG 241 ATGATATGGA GTCTCTAATA GAATGGATGT ATAGTCAATT ACCAAGCTCG TGCTCTTTGA 301 AAAAGTCGAT GATGGATTGT CTTGATGCGG GGGAAAAGAA ATATTTATCG CTAGCTAAGA 361 TGATAGAGGT TCAACCTTAT GCTTCAGAAT TTCGATACTT ACTCCCACTA TGAACATAAC 421 AATTGTTTGC GCGTAGTTGA TTGAACTTTA ATAATCTTAT TATTTTATTT GTTTGTTTTT 481 AAAGGTCTGA ATTGTAATCA TTCGGACCTA AAATCCTCAA AAAGGAAAAT AGAGGTGTTA 541 CTTTAGATGG CTCAAAATTT CGATACTTGT TCCCCCTTAC GAGTTATTTA TTTGTTTGCC 601 AATTAATTAA TAGTTGTTAA ATATAATAAT TATTAAGAC Predicted gene structure (within gDNA segment 203 to 1215): Exon 1 803 1215 ( 413 n); cDNA 1 413 ( 413 n); score: 1.000 MATCH C06HBa0250I21.1-49+ SGN-E310582+ 1.000 413 0.646 C PGS_C06HBa0250I21.1-49+_SGN-E310582+ (803 1215) Alignment (genomic DNA sequence = upper lines): ATGATAACGA AAGATTTTTG AGGAATGCTT ATGGTCTTGA ATATCCAGAA CCTAATGTCA 862 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGATAACGA AAGATTTTTG AGGAATGCTT ATGGTCTTGA ATATCCAGAA CCTAATGTCA 60 CATTTTCACT ATGTCGAGGA AGTTGGTCTT CACCAGCGCT AAGGATCTAT AGACCAGATG 922 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CATTTTCACT ATGTCGAGGA AGTTGGTCTT CACCAGCGCT AAGGATCTAT AGACCAGATG 120 AAGTCGCGAA CGAGCTTGAG AGAGCGAAAA TGGAGTATTT GGAAGCTTCG GTAGGAGTAA 982 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGTCGCGAA CGAGCTTGAG AGAGCGAAAA TGGAGTATTT GGAAGCTTCG GTAGGAGTAA 180 CAAGTAAGAA GAAGATAATG GTGCCCAAGC TAATGCAATG GCACATGAAA GACTTTGCGG 1042 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAAGTAAGAA GAAGATAATG GTGCCCAAGC TAATGCAATG GCACATGAAA GACTTTGCGG 240 ATGATATGGA GTCTCTAATA GAATGGATGT ATAGTCAATT ACCAAGCTCG TGCTCTTTGA 1102 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATGATATGGA GTCTCTAATA GAATGGATGT ATAGTCAATT ACCAAGCTCG TGCTCTTTGA 300 AAAAGTCGAT GATGGATTGT CTTGATGCGG GGGAAAAGAA ATATTTATCG CTAGCTAAGA 1162 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAAAGTCGAT GATGGATTGT CTTGATGCGG GGGAAAAGAA ATATTTATCG CTAGCTAAGA 360 TGATAGAGGT TCAACCTTAT GCTTCAGAAT TTCGATACTT ACTCCCACTA TGA 1215 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ||| TGATAGAGGT TCAACCTTAT GCTTCAGAAT TTCGATACTT ACTCCCACTA TGA 413 hqPGS_C06HBa0250I21.1-49+_SGN-E310582+ (803 1215) ******************************************************************************** EST sequence 3 -strand 508 n (File: SGN-E545661-) 1 AGTAAGAAGA AGATAATGGT GCCCAAGCTA ATGCAAGGGC ACATGAAAGA CTTTGGGGAT 61 GATAGGGAGT CTCTAATAGA AGGGATGTAT AGTCAATTCC CAAGCTCGTG CTCTTGAAAA 121 AAGTCGATGA TGGATTGTCT TGATGCGGGG GAAAAGAAAT TTTTATCGCT AGCTAAGATG 181 ATAGAGGTTC AACCTTATGC TTCAAAATTT GGATACTTAC TCCCCCTATG AACATAACAA 241 TTGTTTGCGC GTAGTTGATG GAACTTTAAT AATCTTATTA TTTTATTGGT TGGTTTTTAA 301 AGGTCTGAAT GGAAATCATT GGGCCCTAAA TTCCTCAAAA AGGAAAATAG GGGGGTTACT 361 TTAGATGGCT CAAAATTTCG ATACTTGTTC CCCCTTACGA GTTATTTATT TGTTTCCCAA 421 TTAATTAATA GTTGTTAAAT ATAATAATTT TTAAGCCCCC AAAAAAAAAA AAAAAAAAAA 481 AAAAAAAAAA AAAAAAAAAA AAAGAAAA Predicted gene structure (within gDNA segment 375 to 1215): Exon 1 985 1215 ( 231 n); cDNA 1 231 ( 231 n); score: 0.952 PPA cDNA 461 508 MATCH C06HBa0250I21.1-49+ SGN-E545661- 0.952 231 0.455 C PGS_C06HBa0250I21.1-49+_SGN-E545661- (985 1215) Alignment (genomic DNA sequence = upper lines): AGTAAGAAGA AGATAATGGT GCCCAAGCTA ATGCAATGGC ACATGAAAGA CTTTGCGGAT 1044 |||||||||| |||||||||| |||||||||| |||||| ||| |||||||||| ||||| |||| AGTAAGAAGA AGATAATGGT GCCCAAGCTA ATGCAAGGGC ACATGAAAGA CTTTGGGGAT 60 GATATGGAGT CTCTAATAGA ATGGATGTAT AGTCAATTAC CAAGCTCGTG CTCTTTGAAA 1104 |||| ||||| |||||||||| | |||||||| |||||||| | |||||||||| ||||| ||| GATAGGGAGT CTCTAATAGA AGGGATGTAT AGTCAATTCC CAAGCTCGTG CTCTTGAAAA 120 AAGTCGATGA TGGATTGTCT TGATGCGGGG GAAAAGAAAT ATTTATCGCT AGCTAAGATG 1164 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| |||||||||| AAGTCGATGA TGGATTGTCT TGATGCGGGG GAAAAGAAAT TTTTATCGCT AGCTAAGATG 180 ATAGAGGTTC AACCTTATGC TTCAGAATTT CGATACTTAC TCCCACTATG A 1215 |||||||||| |||||||||| |||| ||||| ||||||||| |||| ||||| | ATAGAGGTTC AACCTTATGC TTCAAAATTT GGATACTTAC TCCCCCTATG A 231 hqPGS_C06HBa0250I21.1-49+_SGN-E545661- (985 1215) Total number of EST alignments reported: 3 ________________________________________________________________________________ Predicted gene locations (1) in segment 1 to 1215: PGL 1 (+ strand): 802 1215 AGS-1 (802 1215) SCR (e 1.000) Exon 1 802 1215 ( 414 n); score: 1.000 PGS (802 1215) SGN-E545662+ PGS (803 1215) SGN-E310582+ PGS (985 1215) SGN-E545661- 3-phase translation of AGS-1 (+strand): . . . . . . 802 GATGATAACGAAAGATTTTTGAGGAATGCTTATGGTCTTGAATATCCAGAACCTAATGTC D D N E R F L R N A Y G L E Y P E P N V M I T K D F - G M L M V L N I Q N L M S - - R K I F E E C L W S - I S R T - C . . . . . . 862 ACATTTTCACTATGTCGAGGAAGTTGGTCTTCACCAGCGCTAAGGATCTATAGACCAGAT T F S L C R G S W S S P A L R I Y R P D H F H Y V E E V G L H Q R - G S I D Q M H I F T M S R K L V F T S A K D L - T R . . . . . . 922 GAAGTCGCGAACGAGCTTGAGAGAGCGAAAATGGAGTATTTGGAAGCTTCGGTAGGAGTA E V A N E L E R A K M E Y L E A S V G V K S R T S L R E R K W S I W K L R - E - - S R E R A - E S E N G V F G S F G R S . . . . . . 982 ACAAGTAAGAAGAAGATAATGGTGCCCAAGCTAATGCAATGGCACATGAAAGACTTTGCG T S K K K I M V P K L M Q W H M K D F A Q V R R R - W C P S - C N G T - K T L R N K - E E D N G A Q A N A M A H E R L C . . . . . . 1042 GATGATATGGAGTCTCTAATAGAATGGATGTATAGTCAATTACCAAGCTCGTGCTCTTTG D D M E S L I E W M Y S Q L P S S C S L M I W S L - - N G C I V N Y Q A R A L - G - Y G V S N R M D V - S I T K L V L F . . . . . . 1102 AAAAAGTCGATGATGGATTGTCTTGATGCGGGGGAAAAGAAATATTTATCGCTAGCTAAG K K S M M D C L D A G E K K Y L S L A K K S R - W I V L M R G K R N I Y R - L R E K V D D G L S - C G G K E I F I A S - . . . . . . 1162 ATGATAGAGGTTCAACCTTATGCTTCAGAATTTCGATACTTACTCCCACTATGA M I E V Q P Y A S E F R Y L L P L - - - R F N L M L Q N F D T Y S H Y D D R G S T L C F R I S I L T P T M Maximal non-overlapping open reading frames (>= 64 codons): >C06HBa0250I21.1-49+_PGL-1_AGS-1_PPS_1 (802 1215) (frame '1'; 411 bp, 137 residues) 1 DDNERFLRNA YGLEYPEPNV TFSLCRGSWS SPALRIYRPD EVANELERAK MEYLEASVGV 61 TSKKKIMVPK LMQWHMKDFA DDMESLIEWM YSQLPSSCSL KKSMMDCLDA GEKKYLSLAK 121 MIEVQPYASE FRYLLPL- 3-phase translation of AGS-1 (-strand): . . . . . . 1215 TCATAGTGGGAGTAAGTATCGAAATTCTGAAGCATAAGGTTGAACCTCTATCATCTTAGC S - W E - V S K F - S I R L N L Y H L S H S G S K Y R N S E A - G - T S I I L A I V G V S I E I L K H K V E P L S S - . . . . . . 1155 TAGCGATAAATATTTCTTTTCCCCCGCATCAAGACAATCCATCATCGACTTTTTCAAAGA - R - I F L F P R I K T I H H R L F Q R S D K Y F F S P A S R Q S I I D F F K E L A I N I S F P P H Q D N P S S T F S K . . . . . . 1095 GCACGAGCTTGGTAATTGACTATACATCCATTCTATTAGAGACTCCATATCATCCGCAAA A R A W - L T I H P F Y - R L H I I R K H E L G N - L Y I H S I R D S I S S A K S T S L V I D Y T S I L L E T P Y H P Q . . . . . . 1035 GTCTTTCATGTGCCATTGCATTAGCTTGGGCACCATTATCTTCTTCTTACTTGTTACTCC V F H V P L H - L G H H Y L L L T C Y S S F M C H C I S L G T I I F F L L V T P S L S C A I A L A W A P L S S S Y L L L . . . . . . 975 TACCGAAGCTTCCAAATACTCCATTTTCGCTCTCTCAAGCTCGTTCGCGACTTCATCTGG Y R S F Q I L H F R S L K L V R D F I W T E A S K Y S I F A L S S S F A T S S G L P K L P N T P F S L S Q A R S R L H L . . . . . . 915 TCTATAGATCCTTAGCGCTGGTGAAGACCAACTTCCTCGACATAGTGAAAATGTGACATT S I D P - R W - R P T S S T - - K C D I L - I L S A G E D Q L P R H S E N V T L V Y R S L A L V K T N F L D I V K M - H . . . . . . 855 AGGTTCTGGATATTCAAGACCATAAGCATTCCTCAAAAATCTTTCGTTATCATC R F W I F K T I S I P Q K S F V I I G S G Y S R P - A F L K N L S L S - V L D I Q D H K H S S K I F R Y H Maximal non-overlapping open reading frames (>= 64 codons): >C06HBa0250I21.1-49-_PGL-1_AGS-1_PPS_1 (1156 860) (frame '0'; 294 bp, 98 residues) 1 LAINISFPPH QDNPSSTFSK STSLVIDYTS ILLETPYHPQ SLSCAIALAW APLSSSYLLL 61 LPKLPNTPFS LSQARSRLHL VYRSLALVKT NFLDIVKM- ... finished at: Mon Aug 28 22:01:28 2006 ________________________________________________________________________________ Sequence 50: C06HBa0250I21.1-50, from 1 to 279, both strands analyzed. ... started at: Mon Aug 28 22:01:28 2006 EST library file: /tmp/cxgn-bacpublish-resources-v1XKpy/sgn_ests; matching gDNA +strand ... ... found all matches, elapsed seconds = 4 ... matches indexed, elapsed seconds = 4 HitsTableSize = 0 EST library file: /tmp/cxgn-bacpublish-resources-v1XKpy/sgn_ests; matching gDNA -strand ... ... found all matches, elapsed seconds = 4 ... matches indexed, elapsed seconds = 4 HitsTableSize = 0 No significant EST matches were found. ... finished at: Mon Aug 28 22:01:37 2006 ________________________________________________________________________________ Sequence 51: C06HBa0250I21.1-51, from 1 to 234, both strands analyzed. ... started at: Mon Aug 28 22:01:37 2006 EST library file: /tmp/cxgn-bacpublish-resources-v1XKpy/sgn_ests; matching gDNA +strand ... ... found all matches, elapsed seconds = 5 ... matches indexed, elapsed seconds = 5 HitsTableSize = 0 EST library file: /tmp/cxgn-bacpublish-resources-v1XKpy/sgn_ests; matching gDNA -strand ... ... found all matches, elapsed seconds = 4 ... matches indexed, elapsed seconds = 4 HitsTableSize = 0 No significant EST matches were found. ... finished at: Mon Aug 28 22:01:45 2006 ________________________________________________________________________________ Sequence 52: C06HBa0250I21.1-52, from 1 to 372, both strands analyzed. ... started at: Mon Aug 28 22:01:45 2006 EST library file: /tmp/cxgn-bacpublish-resources-v1XKpy/sgn_ests; matching gDNA +strand ... ... found all matches, elapsed seconds = 4 ... matches indexed, elapsed seconds = 4 HitsTableSize = 2 EST library file: /tmp/cxgn-bacpublish-resources-v1XKpy/sgn_ests; matching gDNA -strand ... ... found all matches, elapsed seconds = 4 ... matches indexed, elapsed seconds = 4 HitsTableSize = 1 ******************************************************************************** EST sequence 1 +strand 443 n (File: SGN-E545243+) 1 CCTCGTGCCG AATTCGGCAC GAGGAAGAAG ATCAAGATTT TATGGGAAAA GATAATCTCT 61 TGTTACCATC TTTGCAATGG CGTCCTGTTC GTTCTCCCAA ATCTAATCCC GGTACCAATG 121 TTCCTACAAA CATAGCAAGT CAGGTTTCAG AAAGGAACTT TGTTGGTCGT AAAGAATTAA 181 TTGCACATCC TCCTTCACTT TCTAACTCCT TTCAGTAACG AGTATTCACG TCAAAAATAA 241 AAAATATTAG GTGATTTATT TTTACACGTC AAAAGTATTT ATAGATAATT ATTTGATATG 301 TATTGCTAAT GAGATATTTG AACTTACACA AATGGTTACG GACATATTAT TAAGAGAATA 361 AATATACATA CCAAGACTCT TGATATAACG TTGTAATATT TGGACAATAT TATATGCTTT 421 TTATTTAAAA AAAAAAAAAA AAA Predicted gene structure (within gDNA segment 1 to 372): Exon 1 41 124 ( 84 n); cDNA 28 111 ( 84 n); score: 1.000 PPA cDNA 427 443 MATCH C06HBa0250I21.1-52+ SGN-E545243+ 1.000 84 0.226 G PGS_C06HBa0250I21.1-52+_SGN-E545243+ (41 124) Alignment (genomic DNA sequence = upper lines): AAGATCAAGA TTTTATGGGA AAAGATAATC TCTTGTTACC ATCTTTGCAA TGGCGTCCTG 100 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGATCAAGA TTTTATGGGA AAAGATAATC TCTTGTTACC ATCTTTGCAA TGGCGTCCTG 87 TTCGTTCTCC CAAATCTAAT CCCG 124 |||||||||| |||||||||| |||| TTCGTTCTCC CAAATCTAAT CCCG 111 hqPGS_C06HBa0250I21.1-52+_SGN-E545243+ (41 124) ******************************************************************************** EST sequence 2 +strand 439 n (File: SGN-E311743+) 1 GTGCCGAATT CGGCACGAGG AAGAAGATCA AGATTTTATG GGAAAAGATA ATCTCTTGTT 61 ACCATCTTTG CAATGGCGTC CTGTTCGTTC TCCCAAATCT AATCCCGGTA CCAATGTTCC 121 TACAAACATA GCAAGTCAGG TTTCAGAAAG GAACTTTGTT GGTCGTAAAG AATTAATTGC 181 ACATCCTCCT TCACTTTCTA ACTCCTTTCA GTAACGAGTA TTCACGTCAA AAATAAAAAA 241 TATTAGGTGA TTTATTTTTA CACGTCAAAA GTATTTATAG ATAATTATTT GATATGTATT 301 GCTAATGAGA TATTTGAACT TACACAAATG GTTACGGACA TATTATTAAG AGAATAAATA 361 TACATACCAA GACTCTTGAT ATAACGTTGT AATATTTGGA CAATATTATA TGCTNTTTAT 421 TTAAAAAAAA AAAAAAAAA Predicted gene structure (within gDNA segment 1 to 372): Exon 1 41 124 ( 84 n); cDNA 24 107 ( 84 n); score: 1.000 PPA cDNA 423 439 MATCH C06HBa0250I21.1-52+ SGN-E311743+ 1.000 84 0.226 G PGS_C06HBa0250I21.1-52+_SGN-E311743+ (41 124) Alignment (genomic DNA sequence = upper lines): AAGATCAAGA TTTTATGGGA AAAGATAATC TCTTGTTACC ATCTTTGCAA TGGCGTCCTG 100 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGATCAAGA TTTTATGGGA AAAGATAATC TCTTGTTACC ATCTTTGCAA TGGCGTCCTG 83 TTCGTTCTCC CAAATCTAAT CCCG 124 |||||||||| |||||||||| |||| TTCGTTCTCC CAAATCTAAT CCCG 107 hqPGS_C06HBa0250I21.1-52+_SGN-E311743+ (41 124) ******************************************************************************** EST sequence 3 -strand 465 n (File: SGN-E545242-) 1 CCTCGTGCCG AATTCGGCAC GAGGAAGAAG ATCAAGATTT TATGGGAAAA GATAATCTCT 61 TGTTACCATC TTTGCAATGG CGTCCTGTTC GTTCTCCCAA ATCTAATCCC GGTACCAATG 121 TTCCTACAAA CATAGCAAGT CAGGTTTCAG AAAGGAACTT TGTTGGTCGT AAAGAATTAA 181 TTGCACATCC TCCTTCACTT TCTAACTCCT TTCAGTAACG AGTATTCACG TCAAAAATAA 241 AAAATATTAG GTGATTTATT TTTACACGTC AAAAGTATTT ATAGATAATT ATTTGATATG 301 TATTGCTAAT GAGATATTTG AACTTACACA AATGGTTACG GACATATTAT TAAGAGAATA 361 AATATACATA CCAAGACTCT TGATATAACG TTGTAATATT TGGACAATAT TATATGCTTT 421 TTATTTAAAA AAAAAAAAAA AAAAAAAAAA CTCGAGGGGG GCCCG Predicted gene structure (within gDNA segment 1 to 372): Exon 1 41 124 ( 84 n); cDNA 28 111 ( 84 n); score: 1.000 PPA cDNA 427 451 MATCH C06HBa0250I21.1-52+ SGN-E545242- 1.000 84 0.226 G PGS_C06HBa0250I21.1-52+_SGN-E545242- (41 124) Alignment (genomic DNA sequence = upper lines): AAGATCAAGA TTTTATGGGA AAAGATAATC TCTTGTTACC ATCTTTGCAA TGGCGTCCTG 100 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AAGATCAAGA TTTTATGGGA AAAGATAATC TCTTGTTACC ATCTTTGCAA TGGCGTCCTG 87 TTCGTTCTCC CAAATCTAAT CCCG 124 |||||||||| |||||||||| |||| TTCGTTCTCC CAAATCTAAT CCCG 111 hqPGS_C06HBa0250I21.1-52+_SGN-E545242- (41 124) Total number of EST alignments reported: 3 ________________________________________________________________________________ Predicted gene locations (1) in segment 1 to 372: PGL 1 (+ strand): 41 124 AGS-1 (41 124) SCR (e 1.000) Exon 1 41 124 ( 84 n); score: 1.000 PGS (41 124) SGN-E545243+ PGS (41 124) SGN-E311743+ PGS (41 124) SGN-E545242- 3-phase translation of AGS-1 (+strand): . . . . . . 41 AAGATCAAGATTTTATGGGAAAAGATAATCTCTTGTTACCATCTTTGCAATGGCGTCCTG K I K I L W E K I I S C Y H L C N G V L R S R F Y G K R - S L V T I F A M A S C D Q D F M G K D N L L L P S L Q W R P . . . 101 TTCGTTCTCCCAAATCTAATCCCG F V L P N L I P S F S Q I - S V R S P K S N P Maximal non-overlapping open reading frames (>= 64 codons): none 3-phase translation of AGS-1 (-strand): . . . . . . 124 CGGGATTAGATTTGGGAGAACGAACAGGACGCCATTGCAAAGATGGTAACAAGAGATTAT R D - I W E N E Q D A I A K M V T R D Y G I R F G R T N R T P L Q R W - Q E I I G L D L G E R T G R H C K D G N K R L . . . 64 CTTTTCCCATAAAATCTTGATCTT L F P - N L D L F S H K I L I S F P I K S - S Maximal non-overlapping open reading frames (>= 64 codons): none ... finished at: Mon Aug 28 22:01:54 2006 ________________________________________________________________________________ Sequence 53: C06HBa0250I21.1-53, from 1 to 330, both strands analyzed. ... started at: Mon Aug 28 22:01:54 2006 EST library file: /tmp/cxgn-bacpublish-resources-v1XKpy/sgn_ests; matching gDNA +strand ... ... found all matches, elapsed seconds = 4 ... matches indexed, elapsed seconds = 4 HitsTableSize = 0 EST library file: /tmp/cxgn-bacpublish-resources-v1XKpy/sgn_ests; matching gDNA -strand ... ... found all matches, elapsed seconds = 4 ... matches indexed, elapsed seconds = 4 HitsTableSize = 0 No significant EST matches were found. ... finished at: Mon Aug 28 22:02:01 2006 ________________________________________________________________________________ Sequence 54: C06HBa0250I21.1-54, from 1 to 3030, both strands analyzed. ... started at: Mon Aug 28 22:02:01 2006 EST library file: /tmp/cxgn-bacpublish-resources-v1XKpy/sgn_ests; matching gDNA +strand ... ... found all matches, elapsed seconds = 4 ... matches indexed, elapsed seconds = 4 HitsTableSize = 0 EST library file: /tmp/cxgn-bacpublish-resources-v1XKpy/sgn_ests; matching gDNA -strand ... ... found all matches, elapsed seconds = 4 ... matches indexed, elapsed seconds = 4 HitsTableSize = 0 No significant EST matches were found. ... finished at: Mon Aug 28 22:02:09 2006 ________________________________________________________________________________ Sequence 55: C06HBa0250I21.1-55, from 1 to 4761, both strands analyzed. ... started at: Mon Aug 28 22:02:09 2006 EST library file: /tmp/cxgn-bacpublish-resources-v1XKpy/sgn_ests; matching gDNA +strand ... ... found all matches, elapsed seconds = 4 ... matches indexed, elapsed seconds = 4 HitsTableSize = 3 EST library file: /tmp/cxgn-bacpublish-resources-v1XKpy/sgn_ests; matching gDNA -strand ... ... found all matches, elapsed seconds = 4 ... matches indexed, elapsed seconds = 4 HitsTableSize = 1 ******************************************************************************** EST sequence 3 -strand 788 n (File: SGN-E260836-) 1 AAGATTAAAA AACTCCTTGG GTGCTGCACA TAGAAGGGAG AAACAATGAT AGTTGCATTC 61 CGGATCTGAA ACTTGGCAAA CTCGAGACCT TTCTAAGAGG TAAGTTCTAG TAGCTGCACC 121 AGACATTCTT CAATTTTTGG CAAAAGAAAT TTCCATAAAT TTACCAAAAT GGCTTGATTT 181 GTTATTTCTA AATGTTTTGG CATTCCCAAA TGCTTCAAGT ACTGGATTTG ACTGTAAGCA 241 GCATCAGCAA TAGAGAAAAC ATGAGATATT AATTCGCCAA GCGGTGCTCC CCCTTGAATT 301 GTTCCATCAT GTTGCGATCA TATTGACGAG GAAACTTTTG GAATGGATTG ATGGCAATGA 361 TAATACTTTT AGTATAAGTG TGTCATAATG TCACATTATG ATTGAACCGC ACATAGATAC 421 AATCATTCAT TTCTTCCTCT CACTTATCTA CAGAAATATG ACCATAAACC TACATAGATT 481 TCGTTGATTT GATATCTTGA AGCCAAATTC AGCAAGATGC CAGGCTCATG CAAATATGTT 541 AATTTGGTAA TGTCATCAAA TCCAACAGCA TGAGCATTTT CATCTATGGG GTGTATGTTT 601 GATAAACTCA CTGTAACCTA GATGAATTGA AAAATCAAAT ATCAGTAAGC AGTTACGACT 661 GAAGACATAG CCACTTACAG TTGTGTCTGC TGGATTAAAA TTTTGTGACA GTGCAACATA 721 AGAGGGAACG AGACAGAGCT TACTAATACT TTCTTAAACA AAAAAACAAT AGCAACTACT 781 ACGCTGAA Predicted gene structure (within gDNA segment 1636 to 1): Exon 1 1050 1039 ( 12 n); cDNA 1 12 ( 12 n); score: 0.750 Intron 1 1038 853 ( 186 n); Pd: 0.637 (s: 0), Pa: 0.000 (s: 0.92) Exon 2 852 632 ( 221 n); cDNA 13 233 ( 221 n); score: 0.905 Intron 2 631 592 ( 40 n); Pd: 0.000 (s: 0.96), Pa: 0.000 (s: 0.86) Exon 3 591 448 ( 144 n); cDNA 234 379 ( 146 n); score: 0.861 PPA cDNA 756 766 MATCH C06HBa0250I21.1-55- SGN-E260836- 0.888 377 0.478 C PGS_C06HBa0250I21.1-55-_SGN-E260836- (1050 1039,852 632,591 448) Alignment (genomic DNA sequence = upper lines): AAGATTACCA AGGTGAAGAA CGGAAGCCAC TACTCTAAAG ATTGCTTCCT GCTCTTTCTC 991 ||||||| | | AAGATTAAAA AA........ .......... .......... .......... .......... 12 ACTAATGCCA ACAACATCCA TGGCCCTCCT TGTTGCCAGA TAATCTTGAG CATCACTTAC 931 .......... .......... .......... .......... .......... .......... 12 ACCTACTAGC TCATAGCAAC TCGATTGATT AAGATAGTGA AATGTTTTAG GATCCCCCAA 871 .......... .......... .......... .......... .......... .......... 12 CTTATACTTT TCAACCTCCT CCTGGGGTGC TGCACATAGA AGGTAGAAAC AATGATAGTT 811 || ||| |||||| |||||||||| ||| |||||| |||||||||| .......... ........CT CCTTGGGTGC TGCACATAGA AGGGAGAAAC AATGATAGTT 54 GCGTTCAGGA TCTGAAACTT GGCAAACACG AGACCTTTCA AGGAGGTAAG TTCTAATAGC 751 || ||| ||| |||||||||| ||||||| || ||||||||| | |||||||| ||||| |||| GCATTCCGGA TCTGAAACTT GGCAAACTCG AGACCTTTCT AAGAGGTAAG TTCTAGTAGC 114 TGCACCAGAT ATTCTTCCAT TTTTGTCAAA CTGAATCTCC ACAAATTTAC CAAAACGACT 691 ||||||||| ||||||| || ||||| |||| ||| ||| | |||||||| ||||| | || TGCACCAGAC ATTCTTCAAT TTTTGGCAAA AGAAATTTCC ATAAATTTAC CAAAATGGCT 174 TGAATTGTTA TTTCTAACTG TTTTGGCATT GCCAAATGCT TCAAGTACTG GATTTGACTC 631 ||| |||||| ||||||| || |||||||||| ||||||||| |||||||||| ||||||||| TGATTTGTTA TTTCTAAATG TTTTGGCATT CCCAAATGCT TCAAGTACTG GATTTGACT. 233 TAGAACTTGC TGCTCAACAG TTCGACCTTC AGTGCTTCTG TAAGCAGCAT CAGCAATAGC 571 | |||||||||| ||||||||| .......... .......... .......... .........G TAAGCAGCAT CAGCAATAGA 254 GAAGACATGA GGACTTAATT CTCCAAGTGG TGCT--CCCT TGTATTGTTC CATCATGTGG 513 ||| |||||| | |||||| | ||||| || |||| |||| || ||||||| |||||||| | GAAAACATGA GATATTAATT CGCCAAGCGG TGCTCCCCCT TGAATTGTTC CATCATGTTG 314 CGATCATATA GATGAGGTAA CTTTTGGAAT GGATTGATGG CAATGAGAAT ACTTCCAGTA 453 ||||||||| || |||| || |||||||||| |||||||||| |||||| ||| |||| |||| CGATCATATT GACGAGGAAA CTTTTGGAAT GGATTGATGG CAATGATAAT ACTTTTAGTA 374 TAAGT 448 ||||| TAAGT 379 hqPGS_C06HBa0250I21.1-55-_SGN-E260836- (1050 1039,852 632,591 448) ******************************************************************************** EST sequence 1 -strand 514 n (File: SGN-E269366-) 1 ATTACACATT TTGATAGTGC ATCTTCAAAA TCCTTAAGAT CACACATCGA AAGCTCTGCA 61 ATATTCTGAA GATGTAATTT AGACTTGTCA TCTCTTAGCA TTGATGAATC AGTTTCTTTG 121 CCCCCTGTGA ACTGCTCTTT CTCACTAAAG CCAACAACAT CCATGGGCCT CATTGTTTCC 181 AGATAATCTT GAGCAATACT AATACCTACT AGTTCAAAGA AACTCGCTCT ATACTTTTAA 241 ACCTCCTTCT AAGATTAAAA AACTCCTTGG GTGCTGCACA TAGAAGGGAG AAACAATGAT 301 AGTTGCATTC CGGATCTGAA ACTTGGCAAA CTCGAGACCT TTCTAAGAGG TAAGTTCTAG 361 TAGCTGCACC AGACATTCTT CAATTTTTGG CAAAAGAAAT TTCCATAAAT TTACCAAAAT 421 GGCTTGATTT GTTATTTCTA AATGTTTTGG CATTCCCAAA TGCTTCAAGT ACTGGATTTG 481 ACTGTAAGCA GCATCAGCAA TAGAGAAAAC ATGA Predicted gene structure (within gDNA segment 2922 to 1): Exon 1 1184 1052 ( 133 n); cDNA 1 133 ( 133 n); score: 0.865 Intron 1 1051 1001 ( 51 n); Pd: 0.000 (s: 0.82), Pa: 0.000 (s: 0.92) Exon 2 1000 632 ( 369 n); cDNA 134 483 ( 350 n); score: 0.829 Intron 2 631 592 ( 40 n); Pd: 0.000 (s: 0.96), Pa: 0.000 (s: 0) Exon 3 591 561 ( 31 n); cDNA 484 514 ( 31 n); score: 0.935 MATCH C06HBa0250I21.1-55- SGN-E269366- 0.839 533 1.037 C PGS_C06HBa0250I21.1-55-_SGN-E269366- (1184 1052,1000 632,591 561) Alignment (genomic DNA sequence = upper lines): ATTACACGTT TCAATAGTGC ATCTTCCAAA TCCTTAAGAT CACACATCAA AAGCTCTGCA 1125 ||||||| || | ||||||| |||||| ||| |||||||||| |||||||| | |||||||||| ATTACACATT TTGATAGTGC ATCTTCAAAA TCCTTAAGAT CACACATCGA AAGCTCTGCA 60 ACAGTCTGAA GATGGAACTT AGACTTCTCA TCTTTTAACA CTGATGAATC AATTTCTTTG 1065 | | |||||| |||| || || |||||| ||| ||| ||| || ||||||||| | |||||||| ATATTCTGAA GATGTAATTT AGACTTGTCA TCTCTTAGCA TTGATGAATC AGTTTCTTTG 120 CCCTTTGCAA ACTGAAGATT ACCAAGGTGA AGAACGGAAG CCACTACTCT AAAGATTGCT 1005 ||| || | ||| CCCCCTGTGA ACT....... .......... .......... .......... .......... 133 TCCTGCTCTT TCTCACTAAT GCCAACAACA TCCATGGCCC TCCTTGTTGC CAGATAATCT 945 |||||| ||||||||| |||||||||| ||||||| || || ||||| | |||||||||| ....GCTCTT TCTCACTAAA GCCAACAACA TCCATGGGCC TCATTGTTTC CAGATAATCT 189 TGAGCATCAC TTACACCTAC TAGCTCATAG CAACTCGATT GATTAAGATA GTGAAATGTT 885 |||||| || | | |||||| ||| ||| || ||||| | | || | | || TGAGCAATAC TAATACCTAC TAGTTCAAAG AAACTC---- G-CT---CTA -T---A-CTT 236 TTAGGATCCC CCAACTTATA CTTTTCAACC TCCTCCTGGG GTGCTGCACA TAGAAGGTAG 825 ||| | || || || | | || || | |||| | || |||||||||| ||||||| || TTA--AACCT CCTTCTAAGA -TTAAAAAAC TCCT--T-GG GTGCTGCACA TAGAAGGGAG 290 AAACAATGAT AGTTGCGTTC AGGATCTGAA ACTTGGCAAA CACGAGACCT TTCAAGGAGG 765 |||||||||| |||||| ||| ||||||||| |||||||||| | |||||||| ||| | |||| AAACAATGAT AGTTGCATTC CGGATCTGAA ACTTGGCAAA CTCGAGACCT TTCTAAGAGG 350 TAAGTTCTAA TAGCTGCACC AGATATTCTT CCATTTTTGT CAAACTGAAT CTCCACAAAT 705 ||||||||| |||||||||| ||| |||||| | ||||||| |||| ||| |||| |||| TAAGTTCTAG TAGCTGCACC AGACATTCTT CAATTTTTGG CAAAAGAAAT TTCCATAAAT 410 TTACCAAAAC GACTTGAATT GTTATTTCTA ACTGTTTTGG CATTGCCAAA TGCTTCAAGT 645 ||||||||| | ||||| || |||||||||| | |||||||| |||| ||||| |||||||||| TTACCAAAAT GGCTTGATTT GTTATTTCTA AATGTTTTGG CATTCCCAAA TGCTTCAAGT 470 ACTGGATTTG ACTCTAGAAC TTGCTGCTCA ACAGTTCGAC CTTCAGTGCT TCTGTAAGCA 585 |||||||||| ||| ||||||| ACTGGATTTG ACT....... .......... .......... .......... ...GTAAGCA 490 GCATCAGCAA TAGCGAAGAC ATGA 561 |||||||||| ||| ||| || |||| GCATCAGCAA TAGAGAAAAC ATGA 514 hqPGS_C06HBa0250I21.1-55-_SGN-E269366- (1184 1052,1000 632,591 561) ******************************************************************************** EST sequence 4 +strand 625 n (File: SGN-E324219+) 1 TCGTATGAAA ACTCTTCATC ATTCACTACA AATCGAGTTT ACTTCTGTCC TCTATTCATA 61 AAGTTCAATA AGCGGCATTT TCCTACACAT TCAAAAGTAA ATTCAATGTA GCTCCATCTA 121 TCTCTTCTCT AGTTAATCCT CCTTCTCAAT CTTGAACGTC TGCTAGTTCA GTTTTTTCTT 181 AGAAGATATG GACGAAAAAT CTATAAAGTT TCAACTGCAA ATACCTGGTT AAAGTGTTGT 241 TGCAGCTTCT CATTTGTGTA ATTAATGGAG CATTGTTAAA ATCAGTCAAA CAAGCAAGAA 301 TATAATGTTT TAGAAAGCCC ATTTATACAT ATGTTGAAGC ATCATGATCA AGATTCTGTT 361 TATTACTTCT TCAGTTGTGA CCATTACACA TTTTGATAGT GCATCTTCAA AATCCTTAAG 421 ATCACACATC GAAAGCTCTG CAATATTCTG AAGATGTAAT TTAGACTTGT CATCTCTTAG 481 CATTGATGAA TCAGTTTCTT TGCCCCCTGT GAACTGCTCT TTCTCACTAA AGCCAACAAC 541 ATCCATGGCC CTCATTGTTT CCAGATAATC TTGAGCAATA CTAATACCTA CTAGTTCAAA 601 GAAACTCGCT CTATACTTTT AAACC Predicted gene structure (within gDNA segment 4761 to 1): Exon 1 1446 1386 ( 61 n); cDNA 225 285 ( 61 n); score: 0.869 Intron 1 1385 1284 ( 102 n); Pd: 0.000 (s: 0.84), Pa: 0.487 (s: 0.86) Exon 2 1283 1052 ( 232 n); cDNA 286 515 ( 230 n); score: 0.871 Intron 2 1051 1001 ( 51 n); Pd: 0.000 (s: 0.82), Pa: 0.000 (s: 0.94) Exon 3 1000 908 ( 93 n); cDNA 516 608 ( 93 n); score: 0.892 MATCH C06HBa0250I21.1-55- SGN-E324219+ 0.876 386 0.618 C PGS_C06HBa0250I21.1-55-_SGN-E324219+ (1446 1386,1283 1052,1000 908) Alignment (genomic DNA sequence = upper lines): CTGGTTAAAG TGTTGCTGCA GCTTCTCATT TGTGAAATTA ATGCAGAATT GTTCAAAACT 1387 |||||||||| ||||| |||| |||||||||| |||| ||||| ||| || ||| ||| ||| | CTGGTTAAAG TGTTGTTGCA GCTTCTCATT TGTGTAATTA ATGGAGCATT GTTAAAATCA 284 ATTAGTTTTA AAACTTTCAA AACCATAAAT GTCAAGAACA CCAATAAGAG ATTTTGAGTT 1327 G......... .......... .......... .......... .......... .......... 285 TGGATCTTGA CCAATTGAGT TATTTATTTT GTCCACCAAC CAGTCAAACA AGCGAGAATA 1267 ||||||| ||| |||||| .......... .......... .......... .......... ...TCAAACA AGCAAGAATA 302 TAATGTTTTA GCAAGCCCAT CTCTACTAAC TGTTGCAGCA TCAGGATCAA GACTTCTCTT 1207 |||||||||| | |||||||| | ||| | ||||| |||| ||| |||||| || |||| || TAATGTTTTA GAAAGCCCAT TTATAC-ATA TGTTGAAGCA TCATGATCAA GA-TTCTGTT 360 TATTACTTCT TCAGGTGTGA CCATTACACG TTTCAATAGT GCATCTTCCA AATCCTTAAG 1147 |||||||||| |||| ||||| ||||||||| ||| ||||| |||||||| | |||||||||| TATTACTTCT TCAGTTGTGA CCATTACACA TTTTGATAGT GCATCTTCAA AATCCTTAAG 420 ATCACACATC AAAAGCTCTG CAACAGTCTG AAGATGGAAC TTAGACTTCT CATCTTTTAA 1087 |||||||||| ||||||||| ||| | |||| |||||| || |||||||| | ||||| ||| ATCACACATC GAAAGCTCTG CAATATTCTG AAGATGTAAT TTAGACTTGT CATCTCTTAG 480 CACTGATGAA TCAATTTCTT TGCCCTTTGC AAACTGAAGA TTACCAAGGT GAAGAACGGA 1027 || ||||||| ||| |||||| ||||| || |||| CATTGATGAA TCAGTTTCTT TGCCCCCTGT GAACT..... .......... .......... 515 AGCCACTACT CTAAAGATTG CTTCCTGCTC TTTCTCACTA ATGCCAACAA CATCCATGGC 967 |||| |||||||||| | |||||||| |||||||||| .......... .......... ......GCTC TTTCTCACTA AAGCCAACAA CATCCATGGC 549 CCTCCTTGTT GCCAGATAAT CTTGAGCATC ACTTACACCT ACTAGCTCAT AGCAACTCG 908 |||| ||||| ||||||||| |||||||| ||| | |||| ||||| ||| || |||||| CCTCATTGTT TCCAGATAAT CTTGAGCAAT ACTAATACCT ACTAGTTCAA AGAAACTCG 608 hqPGS_C06HBa0250I21.1-55-_SGN-E324219+ (1446 1386,1283 1052,1000 908) ******************************************************************************** EST sequence 2 +strand 665 n (File: SGN-E212216+) 1 AACGTGCTGA TGAGATAGAA AAGAAACGTG CTGACTCGCA AGAATCAAGT GAAGAAAAGC 61 ACAAGAAGTT GGAAGAAACT GAAAAAAAAG TTCAACAATA TCAGGAATCA ATGAGCAGGC 121 TCGAAGAAAA GCTCACCAAC ATAGAGTCGG AAAATAAAGT ACTTCGCCAG CAGGCTCTGA 181 CAATGGCACA GAACAATAAA TTGCTGTCGG GACGGTCAAG ATCAAGTATT CAGAGGACTG 241 AGAGCAGCAC AAGGAATAGC GTAGATCTGC ATAGCACTTC ATTTTCAAGG GAGAGTGCTG 301 AGGTGGAGGG AAGACCACAG AAATCACTTA ATGATAAACA ACAGGAGTAT CAGGACTTGA 361 TCATCCGGTG TATTGCACAG CACCTTGGCT TCTCTAAAGG CCGACCTGTT GCTGCCTGCA 421 TTATCTACAA GTGCCTTAGG CAGTGGCGAT CATTTGAAGT AGAGCGAACC AGTATCTTTG 481 ACAGGGTAAT ACAAACCATT GGCCAAGCTA TTGAGACTCA CGACAACAAT GATATGTTAG 541 CCTATTGGCT ATCCAATGCA TCCACTCTAT TGCTGCTGCT GCAACGTACA TTAAAAGCTG 601 GTGGTGCTGC TGGGATGACC CCACAGCACA TGCGATCATC GTCAGCCACT CTATTTGGGA 661 GAATG Predicted gene structure (within gDNA segment 2654 to 4528): Exon 1 3254 3918 ( 665 n); cDNA 1 665 ( 665 n); score: 0.997 MATCH C06HBa0250I21.1-55+ SGN-E212216+ 0.997 665 1.000 C PGS_C06HBa0250I21.1-55+_SGN-E212216+ (3254 3918) Alignment (genomic DNA sequence = upper lines): AACGTGCTGA TGAGATAGAA AAGAAACGTG CTGACTCGCA AGAATCAAGT GAAGAAAAGC 3313 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AACGTGCTGA TGAGATAGAA AAGAAACGTG CTGACTCGCA AGAATCAAGT GAAGAAAAGC 60 ACAAGAAGTT GGAAGAAACT GAAAAAAAAG TTCAACAATA TCAGGAATCA ATGAGCAGGC 3373 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACAAGAAGTT GGAAGAAACT GAAAAAAAAG TTCAACAATA TCAGGAATCA ATGAGCAGGC 120 TCGAAGAAAA GCTCACCAAC ATAGAGTCGG AAAATAAAGT ACTTCGCCAG CAGGCTCTGA 3433 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCGAAGAAAA GCTCACCAAC ATAGAGTCGG AAAATAAAGT ACTTCGCCAG CAGGCTCTGA 180 CAATGGCACA GAACAATAAA TTGCTGTCGG GACGGTCAAG ATCAAGTATT CAGAGGACTG 3493 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CAATGGCACA GAACAATAAA TTGCTGTCGG GACGGTCAAG ATCAAGTATT CAGAGGACTG 240 AGAGCAGCAC AAGGAATAGC GTAGATCTGC ATAGCACTTC ATTTTCAAGG GAGAGTGCTG 3553 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGAGCAGCAC AAGGAATAGC GTAGATCTGC ATAGCACTTC ATTTTCAAGG GAGAGTGCTG 300 AGGTGGAGGG AAGACCACAG AAATCACTTA ATGATAAACA ACAGGAGTAT CAGGACTTGA 3613 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGGTGGAGGG AAGACCACAG AAATCACTTA ATGATAAACA ACAGGAGTAT CAGGACTTGA 360 TCATCCGGTG TATTGCACAG CACCTTGGCT TCTCTAAAGG CCGACCTGTT GCTGCCTGCA 3673 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCATCCGGTG TATTGCACAG CACCTTGGCT TCTCTAAAGG CCGACCTGTT GCTGCCTGCA 420 TTATCTACAA GTGCCTTAGG CAGTGGCGAT CATTTGAAGT AGAGCGAACC AGTATCTTTG 3733 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTATCTACAA GTGCCTTAGG CAGTGGCGAT CATTTGAAGT AGAGCGAACC AGTATCTTTG 480 ACAGGGTAAT ACAAACCATT GGCCAAGCTA TTGAGACTCA GGACAACAAT GATATGTTAG 3793 |||||||||| |||||||||| |||||||||| |||||||||| ||||||||| |||||||||| ACAGGGTAAT ACAAACCATT GGCCAAGCTA TTGAGACTCA CGACAACAAT GATATGTTAG 540 CCTATTGGCT ATCCAATGCA TCCACTCTAT TGCTGCTGCT GCAACGTACA TTAAAAGCTG 3853 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| CCTATTGGCT ATCCAATGCA TCCACTCTAT TGCTGCTGCT GCAACGTACA TTAAAAGCTG 600 GTGGTGCTGC TGGGATGACC CCACAGCACA GGCGATCATC GTCAGCCACT CTATTTGGGA 3913 |||||||||| |||||||||| |||||||||| ||||||||| |||||||||| |||||||||| GTGGTGCTGC TGGGATGACC CCACAGCACA TGCGATCATC GTCAGCCACT CTATTTGGGA 660 GAATG 3918 ||||| GAATG 665 hqPGS_C06HBa0250I21.1-55+_SGN-E212216+ (3254 3918) Total number of EST alignments reported: 4 ________________________________________________________________________________ Predicted gene locations (2) in segment 1 to 4761: PGL 1 (- strand): 1446 448 AGS-1 (1050 1039,852 632,591 448) SCR (e 0.750 d 0.637 a 0.000,e 0.905 d 0.000 a 0.000,e 0.861) Exon 1 1050 1039 ( 12 n); score: 0.750 Intron 1 1038 853 ( 186 n); Pd: 0.637 Pa: 0.000 Exon 2 852 632 ( 221 n); score: 0.905 Intron 2 631 592 ( 40 n); Pd: 0.000 Pa: 0.000 Exon 3 591 448 ( 144 n); score: 0.861 PGS (1050 1039,852 632,591 448) SGN-E260836- 3-phase translation of AGS-1 (-strand): . . : . . . . 1050 AAGATTACCAAG : CTCCTGGGGTGCTGCACATAGAAGGTAGAAACAATGATAGTTGCGTTC K I T K : L L G C C T - K V E T M I V A F R L P S : S W G A A H R R - K Q - - L R S D Y Q : A P G V L H I E G R N N D S C V . . . . . . 804 AGGATCTGAAACTTGGCAAACACGAGACCTTTCAAGGAGGTAAGTTCTAATAGCTGCACC R I - N L A N T R P F K E V S S N S C T G S E T W Q T R D L S R R - V L I A A P Q D L K L G K H E T F Q G G K F - - L H . . . . . . 744 AGATATTCTTCCATTTTTGTCAAACTGAATCTCCACAAATTTACCAAAACGACTTGAATT R Y S S I F V K L N L H K F T K T T - I D I L P F L S N - I S T N L P K R L E L Q I F F H F C Q T E S P Q I Y Q N D L N . . . . . . : 684 GTTATTTCTAACTGTTTTGGCATTGCCAAATGCTTCAAGTACTGGATTTGACT : GTAAGCA V I S N C F G I A K C F K Y W I - L : - A L F L T V L A L P N A S S T G F D : C K Q C Y F - L F W H C Q M L Q V L D L T : V S . . . . . . 584 GCATCAGCAATAGCGAAGACATGAGGACTTAATTCTCCAAGTGGTGCTCCCTTGTATTGT A S A I A K T - G L N S P S G A P L Y C H Q Q - R R H E D L I L Q V V L P C I V S I S N S E D M R T - F S K W C S L V L . . . . . . 524 TCCATCATGTGGCGATCATATAGATGAGGTAACTTTTGGAATGGATTGATGGCAATGAGA S I M W R S Y R - G N F W N G L M A M R P S C G D H I D E V T F G M D - W Q - E F H H V A I I - M R - L L E W I D G N E . . 464 ATACTTCCAGTATAAGT I L P V - Y F Q Y K N T S S I S Maximal non-overlapping open reading frames (>= 64 codons): none AGS-2 (1446 1386,1283 1052,1000 632,591 561) SCR (e 0.869 d 0.000 a 0.487,e 0.871 d 0.000 a 0.000,e 0.829 d 0.000 a 0.000,e 0.935) Exon 1 1446 1386 ( 61 n); score: 0.869 Intron 1 1385 1284 ( 102 n); Pd: 0.000 Pa: 0.487 Exon 2 1283 1052 ( 232 n); score: 0.871 Intron 2 1051 1001 ( 51 n); Pd: 0.000 Pa: 0.000 Exon 3 1000 632 ( 369 n); score: 0.829 Intron 3 631 592 ( 40 n); Pd: 0.000 Pa: 0.000 Exon 4 591 561 ( 31 n); score: 0.935 PGS (1184 1052,1000 632,591 561) SGN-E269366- PGS (1446 1386,1283 1052,1000 908) SGN-E324219+ 3-phase translation of AGS-2 (-strand): . . . . . . 1446 CTGGTTAAAGTGTTGCTGCAGCTTCTCATTTGTGAAATTAATGCAGAATTGTTCAAAACT L V K V L L Q L L I C E I N A E L F K T W L K C C C S F S F V K L M Q N C S K L G - S V A A A S H L - N - C R I V Q N . : . . . . . 1386 A : TCAAACAAGCGAGAATATAATGTTTTAGCAAGCCCATCTCTACTAACTGTTGCAGCATC : I K Q A R I - C F S K P I S T N C C S I : S N K R E Y N V L A S P S L L T V A A S Y : Q T S E N I M F - Q A H L Y - L L Q H . . . . . . 1224 AGGATCAAGACTTCTCTTTATTACTTCTTCAGGTGTGACCATTACACGTTTCAATAGTGC R I K T S L Y Y F F R C D H Y T F Q - C G S R L L F I T S S G V T I T R F N S A Q D Q D F S L L L L Q V - P L H V S I V . . . . . . 1164 ATCTTCCAAATCCTTAAGATCACACATCAAAAGCTCTGCAACAGTCTGAAGATGGAACTT I F Q I L K I T H Q K L C N S L K M E L S S K S L R S H I K S S A T V - R W N L H L P N P - D H T S K A L Q Q S E D G T . . . . . . : 1104 AGACTTCTCATCTTTTAACACTGATGAATCAATTTCTTTGCCCTTTGCAAACT : GCTCTTT R L L I F - H - - I N F F A L C K L : L F D F S S F N T D E S I S L P F A N : C S F - T S H L L T L M N Q F L C P L Q T : A L . . . . . . 993 CTCACTAATGCCAACAACATCCATGGCCCTCCTTGTTGCCAGATAATCTTGAGCATCACT L T N A N N I H G P P C C Q I I L S I T S L M P T T S M A L L V A R - S - A S L S H - C Q Q H P W P S L L P D N L E H H . . . . . . 933 TACACCTACTAGCTCATAGCAACTCGATTGATTAAGATAGTGAAATGTTTTAGGATCCCC Y T Y - L I A T R L I K I V K C F R I P T P T S S - Q L D - L R - - N V L G S P L H L L A H S N S I D - D S E M F - D P . . . . . . 873 CAACTTATACTTTTCAACCTCCTCCTGGGGTGCTGCACATAGAAGGTAGAAACAATGATA Q L I L F N L L L G C C T - K V E T M I N L Y F S T S S W G A A H R R - K Q - - P T Y T F Q P P P G V L H I E G R N N D . . . . . . 813 GTTGCGTTCAGGATCTGAAACTTGGCAAACACGAGACCTTTCAAGGAGGTAAGTTCTAAT V A F R I - N L A N T R P F K E V S S N L R S G S E T W Q T R D L S R R - V L I S C V Q D L K L G K H E T F Q G G K F - . . . . . . 753 AGCTGCACCAGATATTCTTCCATTTTTGTCAAACTGAATCTCCACAAATTTACCAAAACG S C T R Y S S I F V K L N L H K F T K T A A P D I L P F L S N - I S T N L P K R - L H Q I F F H F C Q T E S P Q I Y Q N . . . . . . 693 ACTTGAATTGTTATTTCTAACTGTTTTGGCATTGCCAAATGCTTCAAGTACTGGATTTGA T - I V I S N C F G I A K C F K Y W I - L E L L F L T V L A L P N A S S T G F D D L N C Y F - L F W H C Q M L Q V L D L . : . . . 633 CT : GTAAGCAGCATCAGCAATAGCGAAGACATGA L : - A A S A I A K T - : C K Q H Q Q - R R H T : V S S I S N S E D M Maximal non-overlapping open reading frames (>= 64 codons): >C06HBa0250I21.1-55-_PGL-1_AGS-2_PPS_1 (1445 1386,1283 1116) (frame '2'; 225 bp, 75 residues) 1 WLKCCCSFSF VKLMQNCSKL SNKREYNVLA SPSLLTVAAS GSRLLFITSS GVTITRFNSA 61 SSKSLRSHIK SSATV- PGL 2 (+ strand): 3254 3918 AGS-1 (3254 3918) SCR (e 0.997) Exon 1 3254 3918 ( 665 n); score: 0.997 PGS (3254 3918) SGN-E212216+ 3-phase translation of AGS-1 (+strand): . . . . . . 3254 AACGTGCTGATGAGATAGAAAAGAAACGTGCTGACTCGCAAGAATCAAGTGAAGAAAAGC N V L M R - K R N V L T R K N Q V K K S T C - - D R K E T C - L A R I K - R K A R A D E I E K K R A D S Q E S S E E K . . . . . . 3314 ACAAGAAGTTGGAAGAAACTGAAAAAAAAGTTCAACAATATCAGGAATCAATGAGCAGGC T R S W K K L K K K F N N I R N Q - A G Q E V G R N - K K S S T I S G I N E Q A H K K L E E T E K K V Q Q Y Q E S M S R . . . . . . 3374 TCGAAGAAAAGCTCACCAACATAGAGTCGGAAAATAAAGTACTTCGCCAGCAGGCTCTGA S K K S S P T - S R K I K Y F A S R L - R R K A H Q H R V G K - S T S P A G S D L E E K L T N I E S E N K V L R Q Q A L . . . . . . 3434 CAATGGCACAGAACAATAAATTGCTGTCGGGACGGTCAAGATCAAGTATTCAGAGGACTG Q W H R T I N C C R D G Q D Q V F R G L N G T E Q - I A V G T V K I K Y S E D - T M A Q N N K L L S G R S R S S I Q R T . . . . . . 3494 AGAGCAGCACAAGGAATAGCGTAGATCTGCATAGCACTTCATTTTCAAGGGAGAGTGCTG R A A Q G I A - I C I A L H F Q G R V L E Q H K E - R R S A - H F I F K G E C - E S S T R N S V D L H S T S F S R E S A . . . . . . 3554 AGGTGGAGGGAAGACCACAGAAATCACTTAATGATAAACAACAGGAGTATCAGGACTTGA R W R E D H R N H L M I N N R S I R T - G G G K T T E I T - - - T T G V S G L D E V E G R P Q K S L N D K Q Q E Y Q D L . . . . . . 3614 TCATCCGGTGTATTGCACAGCACCTTGGCTTCTCTAAAGGCCGACCTGTTGCTGCCTGCA S S G V L H S T L A S L K A D L L L P A H P V Y C T A P W L L - R P T C C C L H I I R C I A Q H L G F S K G R P V A A C . . . . . . 3674 TTATCTACAAGTGCCTTAGGCAGTGGCGATCATTTGAAGTAGAGCGAACCAGTATCTTTG L S T S A L G S G D H L K - S E P V S L Y L Q V P - A V A I I - S R A N Q Y L - I I Y K C L R Q W R S F E V E R T S I F . . . . . . 3734 ACAGGGTAATACAAACCATTGGCCAAGCTATTGAGACTCAGGACAACAATGATATGTTAG T G - Y K P L A K L L R L R T T M I C - Q G N T N H W P S Y - D S G Q Q - Y V S D R V I Q T I G Q A I E T Q D N N D M L . . . . . . 3794 CCTATTGGCTATCCAATGCATCCACTCTATTGCTGCTGCTGCAACGTACATTAAAAGCTG P I G Y P M H P L Y C C C C N V H - K L L L A I Q C I H S I A A A A T Y I K S W A Y W L S N A S T L L L L L Q R T L K A . . . . . . 3854 GTGGTGCTGCTGGGATGACCCCACAGCACAGGCGATCATCGTCAGCCACTCTATTTGGGA V V L L G - P H S T G D H R Q P L Y L G W C C W D D P T A Q A I I V S H S I W E G G A A G M T P Q H R R S S S A T L F G . 3914 GAATG E N R M Maximal non-overlapping open reading frames (>= 64 codons): >C06HBa0250I21.1-55+_PGL-2_AGS-1_PPS_1 (3256 3918) (frame '0'; 663 bp, 221 residues) 1 RADEIEKKRA DSQESSEEKH KKLEETEKKV QQYQESMSRL EEKLTNIESE NKVLRQQALT 61 MAQNNKLLSG RSRSSIQRTE SSTRNSVDLH STSFSRESAE VEGRPQKSLN DKQQEYQDLI 121 IRCIAQHLGF SKGRPVAACI IYKCLRQWRS FEVERTSIFD RVIQTIGQAI ETQDNNDMLA 181 YWLSNASTLL LLLQRTLKAG GAAGMTPQHR RSSSATLFGR M 3-phase translation of AGS-1 (-strand): . . . . . . 3918 CATTCTCCCAAATAGAGTGGCTGACGATGATCGCCTGTGCTGTGGGGTCATCCCAGCAGC H S P K - S G - R - S P V L W G H P S S I L P N R V A D D D R L C C G V I P A A F S Q I E W L T M I A C A V G S S Q Q . . . . . . 3858 ACCACCAGCTTTTAATGTACGTTGCAGCAGCAGCAATAGAGTGGATGCATTGGATAGCCA T T S F - C T L Q Q Q Q - S G C I G - P P P A F N V R C S S S N R V D A L D S Q H H Q L L M Y V A A A A I E W M H W I A . . . . . . 3798 ATAGGCTAACATATCATTGTTGTCCTGAGTCTCAATAGCTTGGCCAATGGTTTGTATTAC I G - H I I V V L S L N S L A N G L Y Y - A N I S L L S - V S I A W P M V C I T N R L T Y H C C P E S Q - L G Q W F V L . . . . . . 3738 CCTGTCAAAGATACTGGTTCGCTCTACTTCAAATGATCGCCACTGCCTAAGGCACTTGTA P V K D T G S L Y F K - S P L P K A L V L S K I L V R S T S N D R H C L R H L - P C Q R Y W F A L L Q M I A T A - G T C . . . . . . 3678 GATAATGCAGGCAGCAACAGGTCGGCCTTTAGAGAAGCCAAGGTGCTGTGCAATACACCG D N A G S N R S A F R E A K V L C N T P I M Q A A T G R P L E K P R C C A I H R R - C R Q Q Q V G L - R S Q G A V Q Y T . . . . . . 3618 GATGATCAAGTCCTGATACTCCTGTTGTTTATCATTAAGTGATTTCTGTGGTCTTCCCTC D D Q V L I L L L F I I K - F L W S S L M I K S - Y S C C L S L S D F C G L P S G - S S P D T P V V Y H - V I S V V F P . . . . . . 3558 CACCTCAGCACTCTCCCTTGAAAATGAAGTGCTATGCAGATCTACGCTATTCCTTGTGCT H L S T L P - K - S A M Q I Y A I P C A T S A L S L E N E V L C R S T L F L V L P P Q H S P L K M K C Y A D L R Y S L C . . . . . . 3498 GCTCTCAGTCCTCTGAATACTTGATCTTGACCGTCCCGACAGCAATTTATTGTTCTGTGC A L S P L N T - S - P S R Q Q F I V L C L S V L - I L D L D R P D S N L L F C A C S Q S S E Y L I L T V P T A I Y C S V . . . . . . 3438 CATTGTCAGAGCCTGCTGGCGAAGTACTTTATTTTCCGACTCTATGTTGGTGAGCTTTTC H C Q S L L A K Y F I F R L Y V G E L F I V R A C W R S T L F S D S M L V S F S P L S E P A G E V L Y F P T L C W - A F . . . . . . 3378 TTCGAGCCTGCTCATTGATTCCTGATATTGTTGAACTTTTTTTTCAGTTTCTTCCAACTT F E P A H - F L I L L N F F F S F F Q L S S L L I D S - Y C - T F F S V S S N F L R A C S L I P D I V E L F F Q F L P T . . . . . . 3318 CTTGTGCTTTTCTTCACTTGATTCTTGCGAGTCAGCACGTTTCTTTTCTATCTCATCAGC L V L F F T - F L R V S T F L F Y L I S L C F S S L D S C E S A R F F S I S S A S C A F L H L I L A S Q H V S F L S H Q . 3258 ACGTT T R H V Maximal non-overlapping open reading frames (>= 64 codons): >C06HBa0250I21.1-55-_PGL-2_AGS-1_PPS_1 (3580 3386) (frame '0'; 192 bp, 64 residues) 1 VISVVFPPPQ HSPLKMKCYA DLRYSLCCSQ SSEYLILTVP TAIYCSVPLS EPAGEVLYFP 61 TLCW- ... finished at: Mon Aug 28 22:02:21 2006 ________________________________________________________________________________ Sequence 56: C06HBa0250I21.1-56, from 1 to 1983, both strands analyzed. ... started at: Mon Aug 28 22:02:21 2006 EST library file: /tmp/cxgn-bacpublish-resources-v1XKpy/sgn_ests; matching gDNA +strand ... ... found all matches, elapsed seconds = 4 ... matches indexed, elapsed seconds = 4 HitsTableSize = 0 EST library file: /tmp/cxgn-bacpublish-resources-v1XKpy/sgn_ests; matching gDNA -strand ... ... found all matches, elapsed seconds = 4 ... matches indexed, elapsed seconds = 4 HitsTableSize = 0 No significant EST matches were found. ... finished at: Mon Aug 28 22:02:28 2006 ________________________________________________________________________________ Sequence 57: C06HBa0250I21.1-57, from 1 to 1578, both strands analyzed. ... started at: Mon Aug 28 22:02:28 2006 EST library file: /tmp/cxgn-bacpublish-resources-v1XKpy/sgn_ests; matching gDNA +strand ... ... found all matches, elapsed seconds = 4 ... matches indexed, elapsed seconds = 4 HitsTableSize = 0 EST library file: /tmp/cxgn-bacpublish-resources-v1XKpy/sgn_ests; matching gDNA -strand ... ... found all matches, elapsed seconds = 4 ... matches indexed, elapsed seconds = 4 HitsTableSize = 0 No significant EST matches were found. ... finished at: Mon Aug 28 22:02:36 2006 ________________________________________________________________________________ Sequence 58: C06HBa0250I21.1-58, from 1 to 2613, both strands analyzed. ... started at: Mon Aug 28 22:02:36 2006 EST library file: /tmp/cxgn-bacpublish-resources-v1XKpy/sgn_ests; matching gDNA +strand ... ... found all matches, elapsed seconds = 4 ... matches indexed, elapsed seconds = 4 HitsTableSize = 2 EST library file: /tmp/cxgn-bacpublish-resources-v1XKpy/sgn_ests; matching gDNA -strand ... ... found all matches, elapsed seconds = 4 ... matches indexed, elapsed seconds = 4 HitsTableSize = 0 ******************************************************************************** EST sequence 1 +strand 716 n (File: SGN-E551661+) 1 GAGAGGTATT TGCTTATACG GTATGAAATA GATGAGTTGA ACATCATGGT TGAAGATTTG 61 GATCGAAAAG TAAGTGCAGT TCATAACAGG GCAAAAGAAA AACTTGGATT GCCTGTATCC 121 GATGTTTCTA AAGATGCTAT CAATGAAGTA GGTATGGAAA CAATGAAGCA TAAACCTGTA 181 ATTCCTAATG TGGAACTCTC CGAGAGTACA TCTCACCGTT CAACCTCCAG ACAAGCATCA 241 GATATTCAAC AGTACAGGAA TGTAGATGTT TTCTTTGCAC CTTCAGTTGT TCCAAGTTCA 301 ACAACAATGA ATTTGAACCA TCGATCACAA TTGAAAGAAA ACGTTCATGA TGAGAATAAA 361 GTTCTATTGC CAAAAGTATC ACAGAATACT GCTGTTGGTG AAAATATTGC AACTTCTTCC 421 AGTACAGTTC TCAAGAAACA TCTTGCACAG GGGTCTTCAT CGACAGTTAG AGATGTAATT 481 ATTCTCAGTG ATGATGAAGA TTAGCAAACC CCCATACCAT ATCACAAACG GTAACAAGCA 541 TTTATATGTC AGTTCTCTGC TGTAAGTTTG CTGATTGTAA AACTTGAATT ATGTAACATG 601 ACTGGGAAAT GCTCTTTCAA CTCAATCTTG GCACTTTGTT TCGTGTATAT CTGTTCTGGT 661 ACTCTTTTTG TTTAATCGAA TCAACAGCTA TTGACATTTA AAAAAAAAAA AAAAAA Predicted gene structure (within gDNA segment 1510 to 2613): Exon 1 2110 2613 ( 504 n); cDNA 1 504 ( 504 n); score: 1.000 PPA cDNA 700 716 MATCH C06HBa0250I21.1-58+ SGN-E551661+ 1.000 504 0.704 C PGS_C06HBa0250I21.1-58+_SGN-E551661+ (2110 2613) Alignment (genomic DNA sequence = upper lines): GAGAGGTATT TGCTTATACG GTATGAAATA GATGAGTTGA ACATCATGGT TGAAGATTTG 2169 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGAGGTATT TGCTTATACG GTATGAAATA GATGAGTTGA ACATCATGGT TGAAGATTTG 60 GATCGAAAAG TAAGTGCAGT TCATAACAGG GCAAAAGAAA AACTTGGATT GCCTGTATCC 2229 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATCGAAAAG TAAGTGCAGT TCATAACAGG GCAAAAGAAA AACTTGGATT GCCTGTATCC 120 GATGTTTCTA AAGATGCTAT CAATGAAGTA GGTATGGAAA CAATGAAGCA TAAACCTGTA 2289 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATGTTTCTA AAGATGCTAT CAATGAAGTA GGTATGGAAA CAATGAAGCA TAAACCTGTA 180 ATTCCTAATG TGGAACTCTC CGAGAGTACA TCTCACCGTT CAACCTCCAG ACAAGCATCA 2349 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATTCCTAATG TGGAACTCTC CGAGAGTACA TCTCACCGTT CAACCTCCAG ACAAGCATCA 240 GATATTCAAC AGTACAGGAA TGTAGATGTT TTCTTTGCAC CTTCAGTTGT TCCAAGTTCA 2409 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATATTCAAC AGTACAGGAA TGTAGATGTT TTCTTTGCAC CTTCAGTTGT TCCAAGTTCA 300 ACAACAATGA ATTTGAACCA TCGATCACAA TTGAAAGAAA ACGTTCATGA TGAGAATAAA 2469 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACAACAATGA ATTTGAACCA TCGATCACAA TTGAAAGAAA ACGTTCATGA TGAGAATAAA 360 GTTCTATTGC CAAAAGTATC ACAGAATACT GCTGTTGGTG AAAATATTGC AACTTCTTCC 2529 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTCTATTGC CAAAAGTATC ACAGAATACT GCTGTTGGTG AAAATATTGC AACTTCTTCC 420 AGTACAGTTC TCAAGAAACA TCTTGCACAG GGGTCTTCAT CGACAGTTAG AGATGTAATT 2589 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTACAGTTC TCAAGAAACA TCTTGCACAG GGGTCTTCAT CGACAGTTAG AGATGTAATT 480 ATTCTCAGTG ATGATGAAGA TTAG 2613 |||||||||| |||||||||| |||| ATTCTCAGTG ATGATGAAGA TTAG 504 hqPGS_C06HBa0250I21.1-58+_SGN-E551661+ (2110 2613) ******************************************************************************** EST sequence 2 +strand 715 n (File: SGN-E553854+) 1 GAGAGGTATT TGCTTATACG GTATGAAATA GATGAGTTGA ACATCATGGT TGAAGATTTG 61 GATCGAAAAG TAAGTGCAGT TCATAACAGG GCAAAAGAAA AACTTGGATT GCCTGTATCC 121 GATGTTTCTA AAGATGCTAT CAATGAAGTA GGTATGGAAA CAATGAAGCA TAAACCTGTA 181 ATTCCTAATG TGGAACTCTC CGAGAGTACA TCACACCGTT CAACCTCCAG ACAAGCATCA 241 GATATTCAAC AGTACAGGAA TGTAGATGTT TTCTTTGCAC CTTCAGTTGT TCCAAGTTCA 301 ACAACAATGA ATTTGAACCA TCGATCACAA TTGAAAGAAA ACGTTCATGA TGAGAATAAA 361 GTTCTATTGC CAAAAGTATC ACAGAATACT GCTGTTGGTG AAAATATTGC AACTTCTTCC 421 AGTACAGTTC TCAAGAAACA TCTTGCACAG GGGTCTTCAT CGACAGTTAG AGATGTAATT 481 ATTCTCAGTG ATGATGAAGA TTAGCAAACC CCCATACCAT ATCACAAACG GTAACAAGCA 541 TTTATATGTC AGTTCTCTGC TGTAAGTTTG CTGATTGTAA AACTTGAATT ATGTAACATG 601 ACTGGGAAAT GCTCTTTCAA CTCAATCTTG GCACTTTGTT TCGTGTATAT CTGTTCTGGT 661 ACTCTTTTTG TTTAATCGAA TCAACAGCTA TTGACATTTA AAAAAAAAAA AAAAA Predicted gene structure (within gDNA segment 1510 to 2613): Exon 1 2110 2613 ( 504 n); cDNA 1 504 ( 504 n); score: 0.998 PPA cDNA 700 715 MATCH C06HBa0250I21.1-58+ SGN-E553854+ 0.998 504 0.705 C PGS_C06HBa0250I21.1-58+_SGN-E553854+ (2110 2613) Alignment (genomic DNA sequence = upper lines): GAGAGGTATT TGCTTATACG GTATGAAATA GATGAGTTGA ACATCATGGT TGAAGATTTG 2169 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GAGAGGTATT TGCTTATACG GTATGAAATA GATGAGTTGA ACATCATGGT TGAAGATTTG 60 GATCGAAAAG TAAGTGCAGT TCATAACAGG GCAAAAGAAA AACTTGGATT GCCTGTATCC 2229 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATCGAAAAG TAAGTGCAGT TCATAACAGG GCAAAAGAAA AACTTGGATT GCCTGTATCC 120 GATGTTTCTA AAGATGCTAT CAATGAAGTA GGTATGGAAA CAATGAAGCA TAAACCTGTA 2289 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATGTTTCTA AAGATGCTAT CAATGAAGTA GGTATGGAAA CAATGAAGCA TAAACCTGTA 180 ATTCCTAATG TGGAACTCTC CGAGAGTACA TCTCACCGTT CAACCTCCAG ACAAGCATCA 2349 |||||||||| |||||||||| |||||||||| || ||||||| |||||||||| |||||||||| ATTCCTAATG TGGAACTCTC CGAGAGTACA TCACACCGTT CAACCTCCAG ACAAGCATCA 240 GATATTCAAC AGTACAGGAA TGTAGATGTT TTCTTTGCAC CTTCAGTTGT TCCAAGTTCA 2409 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GATATTCAAC AGTACAGGAA TGTAGATGTT TTCTTTGCAC CTTCAGTTGT TCCAAGTTCA 300 ACAACAATGA ATTTGAACCA TCGATCACAA TTGAAAGAAA ACGTTCATGA TGAGAATAAA 2469 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ACAACAATGA ATTTGAACCA TCGATCACAA TTGAAAGAAA ACGTTCATGA TGAGAATAAA 360 GTTCTATTGC CAAAAGTATC ACAGAATACT GCTGTTGGTG AAAATATTGC AACTTCTTCC 2529 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| GTTCTATTGC CAAAAGTATC ACAGAATACT GCTGTTGGTG AAAATATTGC AACTTCTTCC 420 AGTACAGTTC TCAAGAAACA TCTTGCACAG GGGTCTTCAT CGACAGTTAG AGATGTAATT 2589 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| AGTACAGTTC TCAAGAAACA TCTTGCACAG GGGTCTTCAT CGACAGTTAG AGATGTAATT 480 ATTCTCAGTG ATGATGAAGA TTAG 2613 |||||||||| |||||||||| |||| ATTCTCAGTG ATGATGAAGA TTAG 504 hqPGS_C06HBa0250I21.1-58+_SGN-E553854+ (2110 2613) Total number of EST alignments reported: 2 ________________________________________________________________________________ Predicted gene locations (1) in segment 1 to 2613: PGL 1 (+ strand): 2110 2613 AGS-1 (2110 2613) SCR (e 1.000) Exon 1 2110 2613 ( 504 n); score: 1.000 PGS (2110 2613) SGN-E551661+ PGS (2110 2613) SGN-E553854+ 3-phase translation of AGS-1 (+strand): . . . . . . 2110 GAGAGGTATTTGCTTATACGGTATGAAATAGATGAGTTGAACATCATGGTTGAAGATTTG E R Y L L I R Y E I D E L N I M V E D L R G I C L Y G M K - M S - T S W L K I W E V F A Y T V - N R - V E H H G - R F . . . . . . 2170 GATCGAAAAGTAAGTGCAGTTCATAACAGGGCAAAAGAAAAACTTGGATTGCCTGTATCC D R K V S A V H N R A K E K L G L P V S I E K - V Q F I T G Q K K N L D C L Y P G S K S K C S S - Q G K R K T W I A C I . . . . . . 2230 GATGTTTCTAAAGATGCTATCAATGAAGTAGGTATGGAAACAATGAAGCATAAACCTGTA D V S K D A I N E V G M E T M K H K P V M F L K M L S M K - V W K Q - S I N L - R C F - R C Y Q - S R Y G N N E A - T C . . . . . . 2290 ATTCCTAATGTGGAACTCTCCGAGAGTACATCTCACCGTTCAACCTCCAGACAAGCATCA I P N V E L S E S T S H R S T S R Q A S F L M W N S P R V H L T V Q P P D K H Q N S - C G T L R E Y I S P F N L Q T S I . . . . . . 2350 GATATTCAACAGTACAGGAATGTAGATGTTTTCTTTGCACCTTCAGTTGTTCCAAGTTCA D I Q Q Y R N V D V F F A P S V V P S S I F N S T G M - M F S L H L Q L F Q V Q R Y S T V Q E C R C F L C T F S C S K F . . . . . . 2410 ACAACAATGAATTTGAACCATCGATCACAATTGAAAGAAAACGTTCATGATGAGAATAAA T T M N L N H R S Q L K E N V H D E N K Q Q - I - T I D H N - K K T F M M R I K N N N E F E P S I T I E R K R S - - E - . . . . . . 2470 GTTCTATTGCCAAAAGTATCACAGAATACTGCTGTTGGTGAAAATATTGCAACTTCTTCC V L L P K V S Q N T A V G E N I A T S S F Y C Q K Y H R I L L L V K I L Q L L P S S I A K S I T E Y C C W - K Y C N F F . . . . . . 2530 AGTACAGTTCTCAAGAAACATCTTGCACAGGGGTCTTCATCGACAGTTAGAGATGTAATT S T V L K K H L A Q G S S S T V R D V I V Q F S R N I L H R G L H R Q L E M - L Q Y S S Q E T S C T G V F I D S - R C N . . . 2590 ATTCTCAGTGATGATGAAGATTAG I L S D D E D - F S V M M K I Y S Q - - - R L Maximal non-overlapping open reading frames (>= 64 codons): >C06HBa0250I21.1-58+_PGL-1_AGS-1_PPS_1 (2110 2613) (frame '1'; 501 bp, 167 residues) 1 ERYLLIRYEI DELNIMVEDL DRKVSAVHNR AKEKLGLPVS DVSKDAINEV GMETMKHKPV 61 IPNVELSEST SHRSTSRQAS DIQQYRNVDV FFAPSVVPSS TTMNLNHRSQ LKENVHDENK 121 VLLPKVSQNT AVGENIATSS STVLKKHLAQ GSSSTVRDVI ILSDDED- 3-phase translation of AGS-1 (-strand): . . . . . . 2613 CTAATCTTCATCATCACTGAGAATAATTACATCTCTAACTGTCGATGAAGACCCCTGTGC L I F I I T E N N Y I S N C R - R P L C - S S S S L R I I T S L T V D E D P C A N L H H H - E - L H L - L S M K T P V . . . . . . 2553 AAGATGTTTCTTGAGAACTGTACTGGAAGAAGTTGCAATATTTTCACCAACAGCAGTATT K M F L E N C T G R S C N I F T N S S I R C F L R T V L E E V A I F S P T A V F Q D V S - E L Y W K K L Q Y F H Q Q Q Y . . . . . . 2493 CTGTGATACTTTTGGCAATAGAACTTTATTCTCATCATGAACGTTTTCTTTCAATTGTGA L - Y F W Q - N F I L I M N V F F Q L - C D T F G N R T L F S S - T F S F N C D S V I L L A I E L Y S H H E R F L S I V . . . . . . 2433 TCGATGGTTCAAATTCATTGTTGTTGAACTTGGAACAACTGAAGGTGCAAAGAAAACATC S M V Q I H C C - T W N N - R C K E N I R W F K F I V V E L G T T E G A K K T S I D G S N S L L L N L E Q L K V Q R K H . . . . . . 2373 TACATTCCTGTACTGTTGAATATCTGATGCTTGTCTGGAGGTTGAACGGTGAGATGTACT Y I P V L L N I - C L S G G - T V R C T T F L Y C - I S D A C L E V E R - D V L L H S C T V E Y L M L V W R L N G E M Y . . . . . . 2313 CTCGGAGAGTTCCACATTAGGAATTACAGGTTTATGCTTCATTGTTTCCATACCTACTTC L G E F H I R N Y R F M L H C F H T Y F S E S S T L G I T G L C F I V S I P T S S R R V P H - E L Q V Y A S L F P Y L L . . . . . . 2253 ATTGATAGCATCTTTAGAAACATCGGATACAGGCAATCCAAGTTTTTCTTTTGCCCTGTT I D S I F R N I G Y R Q S K F F F C P V L I A S L E T S D T G N P S F S F A L L H - - H L - K H R I Q A I Q V F L L P C . . . . . . 2193 ATGAACTGCACTTACTTTTCGATCCAAATCTTCAACCATGATGTTCAACTCATCTATTTC M N C T Y F S I Q I F N H D V Q L I Y F - T A L T F R S K S S T M M F N S S I S Y E L H L L F D P N L Q P - C S T H L F . . . 2133 ATACCGTATAAGCAAATACCTCTC I P Y K Q I P L Y R I S K Y L H T V - A N T S Maximal non-overlapping open reading frames (>= 64 codons): >C06HBa0250I21.1-58-_PGL-1_AGS-1_PPS_1 (2539 2294) (frame '0'; 243 bp, 81 residues) 1 ELYWKKLQYF HQQQYSVILL AIELYSHHER FLSIVIDGSN SLLLNLEQLK VQRKHLHSCT 61 VEYLMLVWRL NGEMYSRRVP H- >C06HBa0250I21.1-58-_PGL-1_AGS-1_PPS_2 (2328 2110) (frame '1'; 219 bp, 73 residues) 1 TVRCTLGEFH IRNYRFMLHC FHTYFIDSIF RNIGYRQSKF FFCPVMNCTY FSIQIFNHDV 61 QLIYFIPYKQ IPL ... finished at: Mon Aug 28 22:02:45 2006 ________________________________________________________________________________ Sequence 59: C06HBa0250I21.1-59, from 1 to 582, both strands analyzed. ... started at: Mon Aug 28 22:02:45 2006 EST library file: /tmp/cxgn-bacpublish-resources-v1XKpy/sgn_ests; matching gDNA +strand ... ... found all matches, elapsed seconds = 4 ... matches indexed, elapsed seconds = 4 HitsTableSize = 0 EST library file: /tmp/cxgn-bacpublish-resources-v1XKpy/sgn_ests; matching gDNA -strand ... ... found all matches, elapsed seconds = 4 ... matches indexed, elapsed seconds = 4 HitsTableSize = 0 No significant EST matches were found. ... finished at: Mon Aug 28 22:02:52 2006 ________________________________________________________________________________ Sequence 60: C06HBa0250I21.1-60, from 1 to 2322, both strands analyzed. ... started at: Mon Aug 28 22:02:52 2006 EST library file: /tmp/cxgn-bacpublish-resources-v1XKpy/sgn_ests; matching gDNA +strand ... ... found all matches, elapsed seconds = 4 ... matches indexed, elapsed seconds = 4 HitsTableSize = 2 EST library file: /tmp/cxgn-bacpublish-resources-v1XKpy/sgn_ests; matching gDNA -strand ... ... found all matches, elapsed seconds = 4 ... matches indexed, elapsed seconds = 4 HitsTableSize = 1 ******************************************************************************** EST sequence 2 +strand 457 n (File: SGN-E544870+) 1 ATCATCCAGG GAGAAGAATG GAACATGGGG GAGGAAGACA CCTTTGAGAA TCTCAAATTT 61 TTGAACTTGC GTCTACCGAC TCTTTCCAAG TGGGAGGTTG GAGAGGAATC CTTCCCCAAT 121 CTTGAGAAAC TAAAACTGCA GGAATGTGGT AAGCTTGAGG AGATTCCACC TAGTTTTGGA 181 GATATTTATT CATTGAAATT TATCGAAATT GTAAATAGTC CTCAACTTGA AGATTCTGCT 241 CTCAAGATTA AGGAATACGC TGAAGAGATG AGAGGAGGGA GCGAGCTTCA GATCCTTGGC 301 CAGAAGAATA TCCCCTTATT TAAGTAGCAT TATGGTTGAA AAGTAGATTG TACTTTGCAG 361 GGTACATTGT ATATGATTAA GAAAACTTTG TTGCAGTTAT GAAATATTTT TGTGGATTTC 421 TCANNNNANA AAAAAAAAAA AAAAAAAAAA AAAAAAA Predicted gene structure (within gDNA segment 1315 to 2322): Exon 1 1996 2322 ( 327 n); cDNA 1 327 ( 327 n); score: 0.982 PPA cDNA 428 457 MATCH C06HBa0250I21.1-60+ SGN-E544870+ 0.982 327 0.716 C PGS_C06HBa0250I21.1-60+_SGN-E544870+ (1996 2322) Alignment (genomic DNA sequence = upper lines): ATCATCCATG GAGAAGAATG GAACATGGGG GAGGAAGACA CCTTTGAGAA TCTCAAATTT 2055 |||||||| | |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCATCCAGG GAGAAGAATG GAACATGGGG GAGGAAGACA CCTTTGAGAA TCTCAAATTT 60 TTGAACTTGC GTCTACCGAC TCTTTCCAAG TGGGAGGTTG GAGAGGAATC CTTCCCCAAT 2115 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGAACTTGC GTCTACCGAC TCTTTCCAAG TGGGAGGTTG GAGAGGAATC CTTCCCCAAT 120 CTTGAGAAAT TAAAACTGCA GGAATGTGGT AAGTTTGAGG AGATTCCACC TAGTTTTGGA 2175 ||||||||| |||||||||| |||||||||| ||| |||||| |||||||||| |||||||||| CTTGAGAAAC TAAAACTGCA GGAATGTGGT AAGCTTGAGG AGATTCCACC TAGTTTTGGA 180 GATATTTATT CATTGAAATT TATCAAAATT GTAAAGAGTC CTCAACTTGA AGATTCTGCT 2235 |||||||||| |||||||||| |||| ||||| ||||| |||| |||||||||| |||||||||| GATATTTATT CATTGAAATT TATCGAAATT GTAAATAGTC CTCAACTTGA AGATTCTGCT 240 CTCAAGATTA AGGAATACGC TGAAGAAATG AGAGGAGGGA GCGAGCTTCA GATCCTTGGC 2295 |||||||||| |||||||||| |||||| ||| |||||||||| |||||||||| |||||||||| CTCAAGATTA AGGAATACGC TGAAGAGATG AGAGGAGGGA GCGAGCTTCA GATCCTTGGC 300 CAGAAGAATA TCCCCTTATT TAAGTAG 2322 |||||||||| |||||||||| ||||||| CAGAAGAATA TCCCCTTATT TAAGTAG 327 hqPGS_C06HBa0250I21.1-60+_SGN-E544870+ (1996 2322) ******************************************************************************** EST sequence 3 -strand 457 n (File: SGN-E544869-) 1 ATCATCCAGG GAGAAGAATG GAACATGGGG GAGGAAGACA CCTTTGAGAA TCTCAAATTT 61 TTGAAGTGGG GTTTACGGAC TTTTTTCAAG TGGGAGGTTG GAGAGAAATC CTTCCCCAAT 121 CTTGAGAAAC TAAAACTGCA GGAATGTGGT AAGCTTGAGG AGATTCCCCC TAGTTTTGGA 181 GATATTTATT CATTGAAATT TATGGAAATT GTAAATAGTC CTCAACTTGA AGATTCTGCT 241 CTCAAGATTA AGGAATACGT TGAAGAGATG AGAGGAGGGA GCGAGCTTCA GATCCTTGGC 301 CAGAAGAATA TCCCCTTATT TAAGTAGCAT TAGGGTTGAA AAGTAGATTG TACTTTGCAG 361 GGTACATTGT ATATGATTAA GAAAACTTTG TTGCAGTTAT GAAATATTTT TGTGGATTTC 421 TCAAAAAAAA AAAAAAAAAA AAAAAAAAAA AAAGGAA Predicted gene structure (within gDNA segment 1305 to 2322): Exon 1 1996 2322 ( 327 n); cDNA 1 327 ( 327 n); score: 0.948 PPA cDNA 423 454 MATCH C06HBa0250I21.1-60+ SGN-E544869- 0.948 327 0.716 C PGS_C06HBa0250I21.1-60+_SGN-E544869- (1996 2322) Alignment (genomic DNA sequence = upper lines): ATCATCCATG GAGAAGAATG GAACATGGGG GAGGAAGACA CCTTTGAGAA TCTCAAATTT 2055 |||||||| | |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCATCCAGG GAGAAGAATG GAACATGGGG GAGGAAGACA CCTTTGAGAA TCTCAAATTT 60 TTGAACTTGC GTCTACCGAC TCTTTCCAAG TGGGAGGTTG GAGAGGAATC CTTCCCCAAT 2115 ||||| | | || ||| ||| | ||| |||| |||||||||| ||||| |||| |||||||||| TTGAAGTGGG GTTTACGGAC TTTTTTCAAG TGGGAGGTTG GAGAGAAATC CTTCCCCAAT 120 CTTGAGAAAT TAAAACTGCA GGAATGTGGT AAGTTTGAGG AGATTCCACC TAGTTTTGGA 2175 ||||||||| |||||||||| |||||||||| ||| |||||| ||||||| || |||||||||| CTTGAGAAAC TAAAACTGCA GGAATGTGGT AAGCTTGAGG AGATTCCCCC TAGTTTTGGA 180 GATATTTATT CATTGAAATT TATCAAAATT GTAAAGAGTC CTCAACTTGA AGATTCTGCT 2235 |||||||||| |||||||||| ||| ||||| ||||| |||| |||||||||| |||||||||| GATATTTATT CATTGAAATT TATGGAAATT GTAAATAGTC CTCAACTTGA AGATTCTGCT 240 CTCAAGATTA AGGAATACGC TGAAGAAATG AGAGGAGGGA GCGAGCTTCA GATCCTTGGC 2295 |||||||||| ||||||||| |||||| ||| |||||||||| |||||||||| |||||||||| CTCAAGATTA AGGAATACGT TGAAGAGATG AGAGGAGGGA GCGAGCTTCA GATCCTTGGC 300 CAGAAGAATA TCCCCTTATT TAAGTAG 2322 |||||||||| |||||||||| ||||||| CAGAAGAATA TCCCCTTATT TAAGTAG 327 hqPGS_C06HBa0250I21.1-60+_SGN-E544869- (1996 2322) ******************************************************************************** EST sequence 1 +strand 453 n (File: SGN-E308524+) 1 TCATCCAGGG AGAAGAATGG AACATGGGGG AGGAAGACAC CTTTGAGAAT CTCAAATTTT 61 TGAACTTGCG TCTACCGACT CTTTCCAAGT GGGAGGTTGG AGAGGAATCC TTCCCCAATC 121 TTGAGAAACT AAAACTGCAG GAATGTGGTA AGCTTGAGGA GATTCCACCT AGTTTTGGAG 181 ATATTTATTC ATTGAAATTT ATCGAAATTG TAAATAGTCC TCAACTTGAA GATTCTGCTC 241 TCAAGATTAA GGAATACGCT GAAGAGATGA GAGGAGGGAG CGAGCTTCAG ATCCTTGGCC 301 AGAAGAATAT CCCCTTATTT AAGTAGCATT ATGGTTGAAA AGTAGATTGT ACTTTGCAGG 361 GTACATTGTA TATGATTAAG AAAACTTTGT TGCAGTTATG AAATATTTTT GTGGATTTCT 421 CNNNNNAAAA AAAAAAAAAA AAAAAAAATA AAA Predicted gene structure (within gDNA segment 1325 to 2322): Exon 1 1997 2322 ( 326 n); cDNA 1 326 ( 326 n); score: 0.982 PPA cDNA 427 453 MATCH C06HBa0250I21.1-60+ SGN-E308524+ 0.982 326 0.720 C PGS_C06HBa0250I21.1-60+_SGN-E308524+ (1997 2322) Alignment (genomic DNA sequence = upper lines): TCATCCATGG AGAAGAATGG AACATGGGGG AGGAAGACAC CTTTGAGAAT CTCAAATTTT 2056 ||||||| || |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCATCCAGGG AGAAGAATGG AACATGGGGG AGGAAGACAC CTTTGAGAAT CTCAAATTTT 60 TGAACTTGCG TCTACCGACT CTTTCCAAGT GGGAGGTTGG AGAGGAATCC TTCCCCAATC 2116 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAACTTGCG TCTACCGACT CTTTCCAAGT GGGAGGTTGG AGAGGAATCC TTCCCCAATC 120 TTGAGAAATT AAAACTGCAG GAATGTGGTA AGTTTGAGGA GATTCCACCT AGTTTTGGAG 2176 |||||||| | |||||||||| |||||||||| || ||||||| |||||||||| |||||||||| TTGAGAAACT AAAACTGCAG GAATGTGGTA AGCTTGAGGA GATTCCACCT AGTTTTGGAG 180 ATATTTATTC ATTGAAATTT ATCAAAATTG TAAAGAGTCC TCAACTTGAA GATTCTGCTC 2236 |||||||||| |||||||||| ||| |||||| |||| ||||| |||||||||| |||||||||| ATATTTATTC ATTGAAATTT ATCGAAATTG TAAATAGTCC TCAACTTGAA GATTCTGCTC 240 TCAAGATTAA GGAATACGCT GAAGAAATGA GAGGAGGGAG CGAGCTTCAG ATCCTTGGCC 2296 |||||||||| |||||||||| ||||| |||| |||||||||| |||||||||| |||||||||| TCAAGATTAA GGAATACGCT GAAGAGATGA GAGGAGGGAG CGAGCTTCAG ATCCTTGGCC 300 AGAAGAATAT CCCCTTATTT AAGTAG 2322 |||||||||| |||||||||| |||||| AGAAGAATAT CCCCTTATTT AAGTAG 326 hqPGS_C06HBa0250I21.1-60+_SGN-E308524+ (1997 2322) Total number of EST alignments reported: 3 ________________________________________________________________________________ Predicted gene locations (1) in segment 1 to 2322: PGL 1 (+ strand): 1996 2322 AGS-1 (1996 2322) SCR (e 0.982) Exon 1 1996 2322 ( 327 n); score: 0.982 PGS (1996 2322) SGN-E544870+ PGS (1996 2322) SGN-E544869- PGS (1997 2322) SGN-E308524+ 3-phase translation of AGS-1 (+strand): . . . . . . 1996 ATCATCCATGGAGAAGAATGGAACATGGGGGAGGAAGACACCTTTGAGAATCTCAAATTT I I H G E E W N M G E E D T F E N L K F S S M E K N G T W G R K T P L R I S N F H P W R R M E H G G G R H L - E S Q I . . . . . . 2056 TTGAACTTGCGTCTACCGACTCTTTCCAAGTGGGAGGTTGGAGAGGAATCCTTCCCCAAT L N L R L P T L S K W E V G E E S F P N - T C V Y R L F P S G R L E R N P S P I F E L A S T D S F Q V G G W R G I L P Q . . . . . . 2116 CTTGAGAAATTAAAACTGCAGGAATGTGGTAAGTTTGAGGAGATTCCACCTAGTTTTGGA L E K L K L Q E C G K F E E I P P S F G L R N - N C R N V V S L R R F H L V L E S - E I K T A G M W - V - G D S T - F W . . . . . . 2176 GATATTTATTCATTGAAATTTATCAAAATTGTAAAGAGTCCTCAACTTGAAGATTCTGCT D I Y S L K F I K I V K S P Q L E D S A I F I H - N L S K L - R V L N L K I L L R Y L F I E I Y Q N C K E S S T - R F C . . . . . . 2236 CTCAAGATTAAGGAATACGCTGAAGAAATGAGAGGAGGGAGCGAGCTTCAGATCCTTGGC L K I K E Y A E E M R G G S E L Q I L G S R L R N T L K K - E E G A S F R S L A S Q D - G I R - R N E R R E R A S D P W . . . 2296 CAGAAGAATATCCCCTTATTTAAGTAG Q K N I P L F K - R R I S P Y L S P E E Y P L I - V Maximal non-overlapping open reading frames (>= 64 codons): >C06HBa0250I21.1-60+_PGL-1_AGS-1_PPS_1 (1996 2322) (frame '1'; 324 bp, 108 residues) 1 IIHGEEWNMG EEDTFENLKF LNLRLPTLSK WEVGEESFPN LEKLKLQECG KFEEIPPSFG 61 DIYSLKFIKI VKSPQLEDSA LKIKEYAEEM RGGSELQILG QKNIPLFK- 3-phase translation of AGS-1 (-strand): . . . . . . 2322 CTACTTAAATAAGGGGATATTCTTCTGGCCAAGGATCTGAAGCTCGCTCCCTCCTCTCAT L L K - G D I L L A K D L K L A P S S H Y L N K G I F F W P R I - S S L P P L I T - I R G Y S S G Q G S E A R S L L S . . . . . . 2262 TTCTTCAGCGTATTCCTTAATCTTGAGAGCAGAATCTTCAAGTTGAGGACTCTTTACAAT F F S V F L N L E S R I F K L R T L Y N S S A Y S L I L R A E S S S - G L F T I F L Q R I P - S - E Q N L Q V E D S L Q . . . . . . 2202 TTTGATAAATTTCAATGAATAAATATCTCCAAAACTAGGTGGAATCTCCTCAAACTTACC F D K F Q - I N I S K T R W N L L K L T L I N F N E - I S P K L G G I S S N L P F - - I S M N K Y L Q N - V E S P Q T Y . . . . . . 2142 ACATTCCTGCAGTTTTAATTTCTCAAGATTGGGGAAGGATTCCTCTCCAACCTCCCACTT T F L Q F - F L K I G E G F L S N L P L H S C S F N F S R L G K D S S P T S H L H I P A V L I S Q D W G R I P L Q P P T . . . . . . 2082 GGAAAGAGTCGGTAGACGCAAGTTCAAAAATTTGAGATTCTCAAAGGTGTCTTCCTCCCC G K S R - T Q V Q K F E I L K G V F L P E R V G R R K F K N L R F S K V S S S P W K E S V D A S S K I - D S Q R C L P P . . . 2022 CATGTTCCATTCTTCTCCATGGATGAT H V P F F S M D D M F H S S P W M P C S I L L H G - Maximal non-overlapping open reading frames (>= 64 codons): none ... finished at: Mon Aug 28 22:03:01 2006 ________________________________________________________________________________ Sequence 61: C06HBa0250I21.1-61, from 1 to 390, both strands analyzed. ... started at: Mon Aug 28 22:03:01 2006 EST library file: /tmp/cxgn-bacpublish-resources-v1XKpy/sgn_ests; matching gDNA +strand ... ... found all matches, elapsed seconds = 4 ... matches indexed, elapsed seconds = 4 HitsTableSize = 0 EST library file: /tmp/cxgn-bacpublish-resources-v1XKpy/sgn_ests; matching gDNA -strand ... ... found all matches, elapsed seconds = 4 ... matches indexed, elapsed seconds = 4 HitsTableSize = 0 No significant EST matches were found. ... finished at: Mon Aug 28 22:03:09 2006 ________________________________________________________________________________ Sequence 62: C06HBa0250I21.1-62, from 1 to 3786, both strands analyzed. ... started at: Mon Aug 28 22:03:09 2006 EST library file: /tmp/cxgn-bacpublish-resources-v1XKpy/sgn_ests; matching gDNA +strand ... ... found all matches, elapsed seconds = 5 ... matches indexed, elapsed seconds = 5 HitsTableSize = 2 EST library file: /tmp/cxgn-bacpublish-resources-v1XKpy/sgn_ests; matching gDNA -strand ... ... found all matches, elapsed seconds = 5 ... matches indexed, elapsed seconds = 5 HitsTableSize = 1 ******************************************************************************** EST sequence 2 +strand 457 n (File: SGN-E544870+) 1 ATCATCCAGG GAGAAGAATG GAACATGGGG GAGGAAGACA CCTTTGAGAA TCTCAAATTT 61 TTGAACTTGC GTCTACCGAC TCTTTCCAAG TGGGAGGTTG GAGAGGAATC CTTCCCCAAT 121 CTTGAGAAAC TAAAACTGCA GGAATGTGGT AAGCTTGAGG AGATTCCACC TAGTTTTGGA 181 GATATTTATT CATTGAAATT TATCGAAATT GTAAATAGTC CTCAACTTGA AGATTCTGCT 241 CTCAAGATTA AGGAATACGC TGAAGAGATG AGAGGAGGGA GCGAGCTTCA GATCCTTGGC 301 CAGAAGAATA TCCCCTTATT TAAGTAGCAT TATGGTTGAA AAGTAGATTG TACTTTGCAG 361 GGTACATTGT ATATGATTAA GAAAACTTTG TTGCAGTTAT GAAATATTTT TGTGGATTTC 421 TCANNNNANA AAAAAAAAAA AAAAAAAAAA AAAAAAA Predicted gene structure (within gDNA segment 2860 to 3786): Exon 1 3460 3786 ( 327 n); cDNA 1 327 ( 327 n); score: 0.972 PPA cDNA 428 457 MATCH C06HBa0250I21.1-62+ SGN-E544870+ 0.972 327 0.716 C PGS_C06HBa0250I21.1-62+_SGN-E544870+ (3460 3786) Alignment (genomic DNA sequence = upper lines): ATCATCCAGG GAGAAGAATG GAACATGGGG GAGGAAGACA CCTTTGAGAA TCTCAAATTT 3519 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCATCCAGG GAGAAGAATG GAACATGGGG GAGGAAGACA CCTTTGAGAA TCTCAAATTT 60 TTGAACTTGC GTCTAGCGAC TCTTTCCAAG TGGGAGGTTG GAGAGGAATC CTTCCCCAAT 3579 |||||||||| ||||| |||| |||||||||| |||||||||| |||||||||| |||||||||| TTGAACTTGC GTCTACCGAC TCTTTCCAAG TGGGAGGTTG GAGAGGAATC CTTCCCCAAT 120 CTTGAGAAGT TAAAACTGCA GGGATGTCGT AAGCTTGAGG AGATTCCACC TAGTTTTGGA 3639 |||||||| |||||||||| || |||| || |||||||||| |||||||||| |||||||||| CTTGAGAAAC TAAAACTGCA GGAATGTGGT AAGCTTGAGG AGATTCCACC TAGTTTTGGA 180 GATATTTATT CATTGAAAGT TATCAAAATT GTAAAGAGTC CTCAACTTGA AGATTCTGCT 3699 |||||||||| |||||||| | |||| ||||| ||||| |||| |||||||||| |||||||||| GATATTTATT CATTGAAATT TATCGAAATT GTAAATAGTC CTCAACTTGA AGATTCTGCT 240 CTCAAGATTA AGGAATACGC TGAAGATATG AGAGGAGGGA GCGAGCTTCA GATCCTTGGC 3759 |||||||||| |||||||||| |||||| ||| |||||||||| |||||||||| |||||||||| CTCAAGATTA AGGAATACGC TGAAGAGATG AGAGGAGGGA GCGAGCTTCA GATCCTTGGC 300 CAGAAGAATA TCCCCTTATT TAAGTAG 3786 |||||||||| |||||||||| ||||||| CAGAAGAATA TCCCCTTATT TAAGTAG 327 hqPGS_C06HBa0250I21.1-62+_SGN-E544870+ (3460 3786) ******************************************************************************** EST sequence 3 -strand 457 n (File: SGN-E544869-) 1 ATCATCCAGG GAGAAGAATG GAACATGGGG GAGGAAGACA CCTTTGAGAA TCTCAAATTT 61 TTGAAGTGGG GTTTACGGAC TTTTTTCAAG TGGGAGGTTG GAGAGAAATC CTTCCCCAAT 121 CTTGAGAAAC TAAAACTGCA GGAATGTGGT AAGCTTGAGG AGATTCCCCC TAGTTTTGGA 181 GATATTTATT CATTGAAATT TATGGAAATT GTAAATAGTC CTCAACTTGA AGATTCTGCT 241 CTCAAGATTA AGGAATACGT TGAAGAGATG AGAGGAGGGA GCGAGCTTCA GATCCTTGGC 301 CAGAAGAATA TCCCCTTATT TAAGTAGCAT TAGGGTTGAA AAGTAGATTG TACTTTGCAG 361 GGTACATTGT ATATGATTAA GAAAACTTTG TTGCAGTTAT GAAATATTTT TGTGGATTTC 421 TCAAAAAAAA AAAAAAAAAA AAAAAAAAAA AAAGGAA Predicted gene structure (within gDNA segment 2850 to 3786): Exon 1 3460 3786 ( 327 n); cDNA 1 327 ( 327 n); score: 0.939 PPA cDNA 423 454 MATCH C06HBa0250I21.1-62+ SGN-E544869- 0.939 327 0.716 C PGS_C06HBa0250I21.1-62+_SGN-E544869- (3460 3786) Alignment (genomic DNA sequence = upper lines): ATCATCCAGG GAGAAGAATG GAACATGGGG GAGGAAGACA CCTTTGAGAA TCTCAAATTT 3519 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCATCCAGG GAGAAGAATG GAACATGGGG GAGGAAGACA CCTTTGAGAA TCTCAAATTT 60 TTGAACTTGC GTCTAGCGAC TCTTTCCAAG TGGGAGGTTG GAGAGGAATC CTTCCCCAAT 3579 ||||| | | || || ||| | ||| |||| |||||||||| ||||| |||| |||||||||| TTGAAGTGGG GTTTACGGAC TTTTTTCAAG TGGGAGGTTG GAGAGAAATC CTTCCCCAAT 120 CTTGAGAAGT TAAAACTGCA GGGATGTCGT AAGCTTGAGG AGATTCCACC TAGTTTTGGA 3639 |||||||| |||||||||| || |||| || |||||||||| ||||||| || |||||||||| CTTGAGAAAC TAAAACTGCA GGAATGTGGT AAGCTTGAGG AGATTCCCCC TAGTTTTGGA 180 GATATTTATT CATTGAAAGT TATCAAAATT GTAAAGAGTC CTCAACTTGA AGATTCTGCT 3699 |||||||||| |||||||| | ||| ||||| ||||| |||| |||||||||| |||||||||| GATATTTATT CATTGAAATT TATGGAAATT GTAAATAGTC CTCAACTTGA AGATTCTGCT 240 CTCAAGATTA AGGAATACGC TGAAGATATG AGAGGAGGGA GCGAGCTTCA GATCCTTGGC 3759 |||||||||| ||||||||| |||||| ||| |||||||||| |||||||||| |||||||||| CTCAAGATTA AGGAATACGT TGAAGAGATG AGAGGAGGGA GCGAGCTTCA GATCCTTGGC 300 CAGAAGAATA TCCCCTTATT TAAGTAG 3786 |||||||||| |||||||||| ||||||| CAGAAGAATA TCCCCTTATT TAAGTAG 327 hqPGS_C06HBa0250I21.1-62+_SGN-E544869- (3460 3786) ******************************************************************************** EST sequence 1 +strand 453 n (File: SGN-E308524+) 1 TCATCCAGGG AGAAGAATGG AACATGGGGG AGGAAGACAC CTTTGAGAAT CTCAAATTTT 61 TGAACTTGCG TCTACCGACT CTTTCCAAGT GGGAGGTTGG AGAGGAATCC TTCCCCAATC 121 TTGAGAAACT AAAACTGCAG GAATGTGGTA AGCTTGAGGA GATTCCACCT AGTTTTGGAG 181 ATATTTATTC ATTGAAATTT ATCGAAATTG TAAATAGTCC TCAACTTGAA GATTCTGCTC 241 TCAAGATTAA GGAATACGCT GAAGAGATGA GAGGAGGGAG CGAGCTTCAG ATCCTTGGCC 301 AGAAGAATAT CCCCTTATTT AAGTAGCATT ATGGTTGAAA AGTAGATTGT ACTTTGCAGG 361 GTACATTGTA TATGATTAAG AAAACTTTGT TGCAGTTATG AAATATTTTT GTGGATTTCT 421 CNNNNNAAAA AAAAAAAAAA AAAAAAAATA AAA Predicted gene structure (within gDNA segment 2861 to 3786): Exon 1 3461 3786 ( 326 n); cDNA 1 326 ( 326 n); score: 0.972 PPA cDNA 427 453 MATCH C06HBa0250I21.1-62+ SGN-E308524+ 0.972 326 0.720 C PGS_C06HBa0250I21.1-62+_SGN-E308524+ (3461 3786) Alignment (genomic DNA sequence = upper lines): TCATCCAGGG AGAAGAATGG AACATGGGGG AGGAAGACAC CTTTGAGAAT CTCAAATTTT 3520 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCATCCAGGG AGAAGAATGG AACATGGGGG AGGAAGACAC CTTTGAGAAT CTCAAATTTT 60 TGAACTTGCG TCTAGCGACT CTTTCCAAGT GGGAGGTTGG AGAGGAATCC TTCCCCAATC 3580 |||||||||| |||| ||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAACTTGCG TCTACCGACT CTTTCCAAGT GGGAGGTTGG AGAGGAATCC TTCCCCAATC 120 TTGAGAAGTT AAAACTGCAG GGATGTCGTA AGCTTGAGGA GATTCCACCT AGTTTTGGAG 3640 ||||||| | |||||||||| | |||| ||| |||||||||| |||||||||| |||||||||| TTGAGAAACT AAAACTGCAG GAATGTGGTA AGCTTGAGGA GATTCCACCT AGTTTTGGAG 180 ATATTTATTC ATTGAAAGTT ATCAAAATTG TAAAGAGTCC TCAACTTGAA GATTCTGCTC 3700 |||||||||| ||||||| || ||| |||||| |||| ||||| |||||||||| |||||||||| ATATTTATTC ATTGAAATTT ATCGAAATTG TAAATAGTCC TCAACTTGAA GATTCTGCTC 240 TCAAGATTAA GGAATACGCT GAAGATATGA GAGGAGGGAG CGAGCTTCAG ATCCTTGGCC 3760 |||||||||| |||||||||| ||||| |||| |||||||||| |||||||||| |||||||||| TCAAGATTAA GGAATACGCT GAAGAGATGA GAGGAGGGAG CGAGCTTCAG ATCCTTGGCC 300 AGAAGAATAT CCCCTTATTT AAGTAG 3786 |||||||||| |||||||||| |||||| AGAAGAATAT CCCCTTATTT AAGTAG 326 hqPGS_C06HBa0250I21.1-62+_SGN-E308524+ (3461 3786) Total number of EST alignments reported: 3 ________________________________________________________________________________ Predicted gene locations (1) in segment 1 to 3786: PGL 1 (+ strand): 3460 3786 AGS-1 (3460 3786) SCR (e 0.972) Exon 1 3460 3786 ( 327 n); score: 0.972 PGS (3460 3786) SGN-E544870+ PGS (3460 3786) SGN-E544869- PGS (3461 3786) SGN-E308524+ 3-phase translation of AGS-1 (+strand): . . . . . . 3460 ATCATCCAGGGAGAAGAATGGAACATGGGGGAGGAAGACACCTTTGAGAATCTCAAATTT I I Q G E E W N M G E E D T F E N L K F S S R E K N G T W G R K T P L R I S N F H P G R R M E H G G G R H L - E S Q I . . . . . . 3520 TTGAACTTGCGTCTAGCGACTCTTTCCAAGTGGGAGGTTGGAGAGGAATCCTTCCCCAAT L N L R L A T L S K W E V G E E S F P N - T C V - R L F P S G R L E R N P S P I F E L A S S D S F Q V G G W R G I L P Q . . . . . . 3580 CTTGAGAAGTTAAAACTGCAGGGATGTCGTAAGCTTGAGGAGATTCCACCTAGTTTTGGA L E K L K L Q G C R K L E E I P P S F G L R S - N C R D V V S L R R F H L V L E S - E V K T A G M S - A - G D S T - F W . . . . . . 3640 GATATTTATTCATTGAAAGTTATCAAAATTGTAAAGAGTCCTCAACTTGAAGATTCTGCT D I Y S L K V I K I V K S P Q L E D S A I F I H - K L S K L - R V L N L K I L L R Y L F I E S Y Q N C K E S S T - R F C . . . . . . 3700 CTCAAGATTAAGGAATACGCTGAAGATATGAGAGGAGGGAGCGAGCTTCAGATCCTTGGC L K I K E Y A E D M R G G S E L Q I L G S R L R N T L K I - E E G A S F R S L A S Q D - G I R - R Y E R R E R A S D P W . . . 3760 CAGAAGAATATCCCCTTATTTAAGTAG Q K N I P L F K - R R I S P Y L S P E E Y P L I - V Maximal non-overlapping open reading frames (>= 64 codons): >C06HBa0250I21.1-62+_PGL-1_AGS-1_PPS_1 (3460 3786) (frame '1'; 324 bp, 108 residues) 1 IIQGEEWNMG EEDTFENLKF LNLRLATLSK WEVGEESFPN LEKLKLQGCR KLEEIPPSFG 61 DIYSLKVIKI VKSPQLEDSA LKIKEYAEDM RGGSELQILG QKNIPLFK- 3-phase translation of AGS-1 (-strand): . . . . . . 3786 CTACTTAAATAAGGGGATATTCTTCTGGCCAAGGATCTGAAGCTCGCTCCCTCCTCTCAT L L K - G D I L L A K D L K L A P S S H Y L N K G I F F W P R I - S S L P P L I T - I R G Y S S G Q G S E A R S L L S . . . . . . 3726 ATCTTCAGCGTATTCCTTAATCTTGAGAGCAGAATCTTCAAGTTGAGGACTCTTTACAAT I F S V F L N L E S R I F K L R T L Y N S S A Y S L I L R A E S S S - G L F T I Y L Q R I P - S - E Q N L Q V E D S L Q . . . . . . 3666 TTTGATAACTTTCAATGAATAAATATCTCCAAAACTAGGTGGAATCTCCTCAAGCTTACG F D N F Q - I N I S K T R W N L L K L T L I T F N E - I S P K L G G I S S S L R F - - L S M N K Y L Q N - V E S P Q A Y . . . . . . 3606 ACATCCCTGCAGTTTTAACTTCTCAAGATTGGGGAAGGATTCCTCTCCAACCTCCCACTT T S L Q F - L L K I G E G F L S N L P L H P C S F N F S R L G K D S S P T S H L D I P A V L T S Q D W G R I P L Q P P T . . . . . . 3546 GGAAAGAGTCGCTAGACGCAAGTTCAAAAATTTGAGATTCTCAAAGGTGTCTTCCTCCCC G K S R - T Q V Q K F E I L K G V F L P E R V A R R K F K N L R F S K V S S S P W K E S L D A S S K I - D S Q R C L P P . . . 3486 CATGTTCCATTCTTCTCCCTGGATGAT H V P F F S L D D M F H S S P W M P C S I L L P G - Maximal non-overlapping open reading frames (>= 64 codons): none ... finished at: Mon Aug 28 22:03:18 2006 ________________________________________________________________________________ Sequence 63: C06HBa0250I21.1-63, from 1 to 378, both strands analyzed. ... started at: Mon Aug 28 22:03:18 2006 EST library file: /tmp/cxgn-bacpublish-resources-v1XKpy/sgn_ests; matching gDNA +strand ... ... found all matches, elapsed seconds = 4 ... matches indexed, elapsed seconds = 4 HitsTableSize = 0 EST library file: /tmp/cxgn-bacpublish-resources-v1XKpy/sgn_ests; matching gDNA -strand ... ... found all matches, elapsed seconds = 5 ... matches indexed, elapsed seconds = 5 HitsTableSize = 0 No significant EST matches were found. ... finished at: Mon Aug 28 22:03:27 2006 ________________________________________________________________________________ Sequence 64: C06HBa0250I21.1-64, from 1 to 705, both strands analyzed. ... started at: Mon Aug 28 22:03:27 2006 EST library file: /tmp/cxgn-bacpublish-resources-v1XKpy/sgn_ests; matching gDNA +strand ... ... found all matches, elapsed seconds = 4 ... matches indexed, elapsed seconds = 4 HitsTableSize = 0 EST library file: /tmp/cxgn-bacpublish-resources-v1XKpy/sgn_ests; matching gDNA -strand ... ... found all matches, elapsed seconds = 4 ... matches indexed, elapsed seconds = 4 HitsTableSize = 0 No significant EST matches were found. ... finished at: Mon Aug 28 22:03:36 2006 ________________________________________________________________________________ Sequence 65: C06HBa0250I21.1-65, from 1 to 237, both strands analyzed. ... started at: Mon Aug 28 22:03:36 2006 EST library file: /tmp/cxgn-bacpublish-resources-v1XKpy/sgn_ests; matching gDNA +strand ... ... found all matches, elapsed seconds = 4 ... matches indexed, elapsed seconds = 4 HitsTableSize = 0 EST library file: /tmp/cxgn-bacpublish-resources-v1XKpy/sgn_ests; matching gDNA -strand ... ... found all matches, elapsed seconds = 4 ... matches indexed, elapsed seconds = 4 HitsTableSize = 0 No significant EST matches were found. ... finished at: Mon Aug 28 22:03:43 2006 ________________________________________________________________________________ Sequence 66: C06HBa0250I21.1-66, from 1 to 4353, both strands analyzed. ... started at: Mon Aug 28 22:03:43 2006 EST library file: /tmp/cxgn-bacpublish-resources-v1XKpy/sgn_ests; matching gDNA +strand ... ... found all matches, elapsed seconds = 3 ... matches indexed, elapsed seconds = 4 HitsTableSize = 2 EST library file: /tmp/cxgn-bacpublish-resources-v1XKpy/sgn_ests; matching gDNA -strand ... ... found all matches, elapsed seconds = 4 ... matches indexed, elapsed seconds = 4 HitsTableSize = 1 ******************************************************************************** EST sequence 2 +strand 457 n (File: SGN-E544870+) 1 ATCATCCAGG GAGAAGAATG GAACATGGGG GAGGAAGACA CCTTTGAGAA TCTCAAATTT 61 TTGAACTTGC GTCTACCGAC TCTTTCCAAG TGGGAGGTTG GAGAGGAATC CTTCCCCAAT 121 CTTGAGAAAC TAAAACTGCA GGAATGTGGT AAGCTTGAGG AGATTCCACC TAGTTTTGGA 181 GATATTTATT CATTGAAATT TATCGAAATT GTAAATAGTC CTCAACTTGA AGATTCTGCT 241 CTCAAGATTA AGGAATACGC TGAAGAGATG AGAGGAGGGA GCGAGCTTCA GATCCTTGGC 301 CAGAAGAATA TCCCCTTATT TAAGTAGCAT TATGGTTGAA AAGTAGATTG TACTTTGCAG 361 GGTACATTGT ATATGATTAA GAAAACTTTG TTGCAGTTAT GAAATATTTT TGTGGATTTC 421 TCANNNNANA AAAAAAAAAA AAAAAAAAAA AAAAAAA Predicted gene structure (within gDNA segment 2830 to 4353): Exon 1 3430 3771 ( 342 n); cDNA 1 342 ( 342 n); score: 0.950 PPA cDNA 428 457 MATCH C06HBa0250I21.1-66+ SGN-E544870+ 0.950 342 0.748 C PGS_C06HBa0250I21.1-66+_SGN-E544870+ (3430 3771) Alignment (genomic DNA sequence = upper lines): ATCATCCAGG GAGAAGAATG GAACATGGGG GAGGAAGACA CCTTTGAGAA TCTCAAATTT 3489 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCATCCAGG GAGAAGAATG GAACATGGGG GAGGAAGACA CCTTTGAGAA TCTCAAATTT 60 TTGAACTTGC GTCTACCGAC TCTTTCCAAG TGGGAGGTTG GAGAGGAATC CTTCCCCAAT 3549 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGAACTTGC GTCTACCGAC TCTTTCCAAG TGGGAGGTTG GAGAGGAATC CTTCCCCAAT 120 CTTGAGAAAT TAAAACTGCG GGGATGTGGT GAGCTTGAGG AGATTCCACC TAGTTTTGGA 3609 ||||||||| ||||||||| || ||||||| ||||||||| |||||||||| |||||||||| CTTGAGAAAC TAAAACTGCA GGAATGTGGT AAGCTTGAGG AGATTCCACC TAGTTTTGGA 180 GATATTTATT CATTGAAATT TATCAAAATT GTAAAGAGTC CTCAACTTGA AGATTCTGCT 3669 |||||||||| |||||||||| |||| ||||| ||||| |||| |||||||||| |||||||||| GATATTTATT CATTGAAATT TATCGAAATT GTAAATAGTC CTCAACTTGA AGATTCTGCT 240 CTCAAGATTA AGGAATACGC TGAAGAGATG AGAGGAGGGG GCGAGCTTCA GATCCTTGGC 3729 |||||||||| |||||||||| |||||||||| ||||||||| |||||||||| |||||||||| CTCAAGATTA AGGAATACGC TGAAGAGATG AGAGGAGGGA GCGAGCTTCA GATCCTTGGC 300 CAGAAGAATA TCCCCTTATT TAACCGTTAT GATTATCCAA AA 3771 |||||||||| |||||||||| ||| || || | || || CAGAAGAATA TCCCCTTATT TAAGTAGCAT TATGGTTGAA AA 342 hqPGS_C06HBa0250I21.1-66+_SGN-E544870+ (3430 3771) ******************************************************************************** EST sequence 3 -strand 457 n (File: SGN-E544869-) 1 ATCATCCAGG GAGAAGAATG GAACATGGGG GAGGAAGACA CCTTTGAGAA TCTCAAATTT 61 TTGAAGTGGG GTTTACGGAC TTTTTTCAAG TGGGAGGTTG GAGAGAAATC CTTCCCCAAT 121 CTTGAGAAAC TAAAACTGCA GGAATGTGGT AAGCTTGAGG AGATTCCCCC TAGTTTTGGA 181 GATATTTATT CATTGAAATT TATGGAAATT GTAAATAGTC CTCAACTTGA AGATTCTGCT 241 CTCAAGATTA AGGAATACGT TGAAGAGATG AGAGGAGGGA GCGAGCTTCA GATCCTTGGC 301 CAGAAGAATA TCCCCTTATT TAAGTAGCAT TAGGGTTGAA AAGTAGATTG TACTTTGCAG 361 GGTACATTGT ATATGATTAA GAAAACTTTG TTGCAGTTAT GAAATATTTT TGTGGATTTC 421 TCAAAAAAAA AAAAAAAAAA AAAAAAAAAA AAAGGAA Predicted gene structure (within gDNA segment 2820 to 4353): Exon 1 3430 3752 ( 323 n); cDNA 1 323 ( 323 n); score: 0.944 PPA cDNA 423 454 MATCH C06HBa0250I21.1-66+ SGN-E544869- 0.944 323 0.707 C PGS_C06HBa0250I21.1-66+_SGN-E544869- (3430 3752) Alignment (genomic DNA sequence = upper lines): ATCATCCAGG GAGAAGAATG GAACATGGGG GAGGAAGACA CCTTTGAGAA TCTCAAATTT 3489 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCATCCAGG GAGAAGAATG GAACATGGGG GAGGAAGACA CCTTTGAGAA TCTCAAATTT 60 TTGAACTTGC GTCTACCGAC TCTTTCCAAG TGGGAGGTTG GAGAGGAATC CTTCCCCAAT 3549 ||||| | | || ||| ||| | ||| |||| |||||||||| ||||| |||| |||||||||| TTGAAGTGGG GTTTACGGAC TTTTTTCAAG TGGGAGGTTG GAGAGAAATC CTTCCCCAAT 120 CTTGAGAAAT TAAAACTGCG GGGATGTGGT GAGCTTGAGG AGATTCCACC TAGTTTTGGA 3609 ||||||||| ||||||||| || ||||||| ||||||||| ||||||| || |||||||||| CTTGAGAAAC TAAAACTGCA GGAATGTGGT AAGCTTGAGG AGATTCCCCC TAGTTTTGGA 180 GATATTTATT CATTGAAATT TATCAAAATT GTAAAGAGTC CTCAACTTGA AGATTCTGCT 3669 |||||||||| |||||||||| ||| ||||| ||||| |||| |||||||||| |||||||||| GATATTTATT CATTGAAATT TATGGAAATT GTAAATAGTC CTCAACTTGA AGATTCTGCT 240 CTCAAGATTA AGGAATACGC TGAAGAGATG AGAGGAGGGG GCGAGCTTCA GATCCTTGGC 3729 |||||||||| ||||||||| |||||||||| ||||||||| |||||||||| |||||||||| CTCAAGATTA AGGAATACGT TGAAGAGATG AGAGGAGGGA GCGAGCTTCA GATCCTTGGC 300 CAGAAGAATA TCCCCTTATT TAA 3752 |||||||||| |||||||||| ||| CAGAAGAATA TCCCCTTATT TAA 323 hqPGS_C06HBa0250I21.1-66+_SGN-E544869- (3430 3752) ******************************************************************************** EST sequence 1 +strand 453 n (File: SGN-E308524+) 1 TCATCCAGGG AGAAGAATGG AACATGGGGG AGGAAGACAC CTTTGAGAAT CTCAAATTTT 61 TGAACTTGCG TCTACCGACT CTTTCCAAGT GGGAGGTTGG AGAGGAATCC TTCCCCAATC 121 TTGAGAAACT AAAACTGCAG GAATGTGGTA AGCTTGAGGA GATTCCACCT AGTTTTGGAG 181 ATATTTATTC ATTGAAATTT ATCGAAATTG TAAATAGTCC TCAACTTGAA GATTCTGCTC 241 TCAAGATTAA GGAATACGCT GAAGAGATGA GAGGAGGGAG CGAGCTTCAG ATCCTTGGCC 301 AGAAGAATAT CCCCTTATTT AAGTAGCATT ATGGTTGAAA AGTAGATTGT ACTTTGCAGG 361 GTACATTGTA TATGATTAAG AAAACTTTGT TGCAGTTATG AAATATTTTT GTGGATTTCT 421 CNNNNNAAAA AAAAAAAAAA AAAAAAAATA AAA Predicted gene structure (within gDNA segment 2831 to 4353): Exon 1 3431 3771 ( 341 n); cDNA 1 341 ( 341 n); score: 0.950 PPA cDNA 427 453 MATCH C06HBa0250I21.1-66+ SGN-E308524+ 0.950 341 0.753 C PGS_C06HBa0250I21.1-66+_SGN-E308524+ (3431 3771) Alignment (genomic DNA sequence = upper lines): TCATCCAGGG AGAAGAATGG AACATGGGGG AGGAAGACAC CTTTGAGAAT CTCAAATTTT 3490 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCATCCAGGG AGAAGAATGG AACATGGGGG AGGAAGACAC CTTTGAGAAT CTCAAATTTT 60 TGAACTTGCG TCTACCGACT CTTTCCAAGT GGGAGGTTGG AGAGGAATCC TTCCCCAATC 3550 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAACTTGCG TCTACCGACT CTTTCCAAGT GGGAGGTTGG AGAGGAATCC TTCCCCAATC 120 TTGAGAAATT AAAACTGCGG GGATGTGGTG AGCTTGAGGA GATTCCACCT AGTTTTGGAG 3610 |||||||| | |||||||| | | ||||||| |||||||||| |||||||||| |||||||||| TTGAGAAACT AAAACTGCAG GAATGTGGTA AGCTTGAGGA GATTCCACCT AGTTTTGGAG 180 ATATTTATTC ATTGAAATTT ATCAAAATTG TAAAGAGTCC TCAACTTGAA GATTCTGCTC 3670 |||||||||| |||||||||| ||| |||||| |||| ||||| |||||||||| |||||||||| ATATTTATTC ATTGAAATTT ATCGAAATTG TAAATAGTCC TCAACTTGAA GATTCTGCTC 240 TCAAGATTAA GGAATACGCT GAAGAGATGA GAGGAGGGGG CGAGCTTCAG ATCCTTGGCC 3730 |||||||||| |||||||||| |||||||||| |||||||| | |||||||||| |||||||||| TCAAGATTAA GGAATACGCT GAAGAGATGA GAGGAGGGAG CGAGCTTCAG ATCCTTGGCC 300 AGAAGAATAT CCCCTTATTT AACCGTTATG ATTATCCAAA A 3771 |||||||||| |||||||||| || || || | ||| | AGAAGAATAT CCCCTTATTT AAGTAGCATT ATGGTTGAAA A 341 hqPGS_C06HBa0250I21.1-66+_SGN-E308524+ (3431 3771) Total number of EST alignments reported: 3 ________________________________________________________________________________ Predicted gene locations (1) in segment 1 to 4353: PGL 1 (+ strand): 3430 3771 AGS-1 (3430 3771) SCR (e 0.950) Exon 1 3430 3771 ( 342 n); score: 0.950 PGS (3430 3771) SGN-E544870+ PGS (3430 3752) SGN-E544869- PGS (3431 3771) SGN-E308524+ 3-phase translation of AGS-1 (+strand): . . . . . . 3430 ATCATCCAGGGAGAAGAATGGAACATGGGGGAGGAAGACACCTTTGAGAATCTCAAATTT I I Q G E E W N M G E E D T F E N L K F S S R E K N G T W G R K T P L R I S N F H P G R R M E H G G G R H L - E S Q I . . . . . . 3490 TTGAACTTGCGTCTACCGACTCTTTCCAAGTGGGAGGTTGGAGAGGAATCCTTCCCCAAT L N L R L P T L S K W E V G E E S F P N - T C V Y R L F P S G R L E R N P S P I F E L A S T D S F Q V G G W R G I L P Q . . . . . . 3550 CTTGAGAAATTAAAACTGCGGGGATGTGGTGAGCTTGAGGAGATTCCACCTAGTTTTGGA L E K L K L R G C G E L E E I P P S F G L R N - N C G D V V S L R R F H L V L E S - E I K T A G M W - A - G D S T - F W . . . . . . 3610 GATATTTATTCATTGAAATTTATCAAAATTGTAAAGAGTCCTCAACTTGAAGATTCTGCT D I Y S L K F I K I V K S P Q L E D S A I F I H - N L S K L - R V L N L K I L L R Y L F I E I Y Q N C K E S S T - R F C . . . . . . 3670 CTCAAGATTAAGGAATACGCTGAAGAGATGAGAGGAGGGGGCGAGCTTCAGATCCTTGGC L K I K E Y A E E M R G G G E L Q I L G S R L R N T L K R - E E G A S F R S L A S Q D - G I R - R D E R R G R A S D P W . . . . . 3730 CAGAAGAATATCCCCTTATTTAACCGTTATGATTATCCAAAA Q K N I P L F N R Y D Y P K R R I S P Y L T V M I I Q P E E Y P L I - P L - L S K Maximal non-overlapping open reading frames (>= 64 codons): >C06HBa0250I21.1-66+_PGL-1_AGS-1_PPS_1 (3430 3771) (frame '1'; 342 bp, 114 residues) 1 IIQGEEWNMG EEDTFENLKF LNLRLPTLSK WEVGEESFPN LEKLKLRGCG ELEEIPPSFG 61 DIYSLKFIKI VKSPQLEDSA LKIKEYAEEM RGGGELQILG QKNIPLFNRY DYPK 3-phase translation of AGS-1 (-strand): . . . . . . 3771 TTTTGGATAATCATAACGGTTAAATAAGGGGATATTCTTCTGGCCAAGGATCTGAAGCTC F W I I I T V K - G D I L L A K D L K L F G - S - R L N K G I F F W P R I - S S L D N H N G - I R G Y S S G Q G S E A . . . . . . 3711 GCCCCCTCCTCTCATCTCTTCAGCGTATTCCTTAATCTTGAGAGCAGAATCTTCAAGTTG A P S S H L F S V F L N L E S R I F K L P P P L I S S A Y S L I L R A E S S S - R P L L S S L Q R I P - S - E Q N L Q V . . . . . . 3651 AGGACTCTTTACAATTTTGATAAATTTCAATGAATAAATATCTCCAAAACTAGGTGGAAT R T L Y N F D K F Q - I N I S K T R W N G L F T I L I N F N E - I S P K L G G I E D S L Q F - - I S M N K Y L Q N - V E . . . . . . 3591 CTCCTCAAGCTCACCACATCCCCGCAGTTTTAATTTCTCAAGATTGGGGAAGGATTCCTC L L K L T T S P Q F - F L K I G E G F L S S S S P H P R S F N F S R L G K D S S S P Q A H H I P A V L I S Q D W G R I P . . . . . . 3531 TCCAACCTCCCACTTGGAAAGAGTCGGTAGACGCAAGTTCAAAAATTTGAGATTCTCAAA S N L P L G K S R - T Q V Q K F E I L K P T S H L E R V G R R K F K N L R F S K L Q P P T W K E S V D A S S K I - D S Q . . . . . 3471 GGTGTCTTCCTCCCCCATGTTCCATTCTTCTCCCTGGATGAT G V F L P H V P F F S L D D V S S S P M F H S S P W M R C L P P P C S I L L P G - Maximal non-overlapping open reading frames (>= 64 codons): none ... finished at: Mon Aug 28 22:03:51 2006 ________________________________________________________________________________ Sequence 67: C06HBa0250I21.1-67, from 1 to 4353, both strands analyzed. ... started at: Mon Aug 28 22:03:51 2006 EST library file: /tmp/cxgn-bacpublish-resources-v1XKpy/sgn_ests; matching gDNA +strand ... ... found all matches, elapsed seconds = 4 ... matches indexed, elapsed seconds = 4 HitsTableSize = 2 EST library file: /tmp/cxgn-bacpublish-resources-v1XKpy/sgn_ests; matching gDNA -strand ... ... found all matches, elapsed seconds = 5 ... matches indexed, elapsed seconds = 5 HitsTableSize = 1 ******************************************************************************** EST sequence 2 +strand 457 n (File: SGN-E544870+) 1 ATCATCCAGG GAGAAGAATG GAACATGGGG GAGGAAGACA CCTTTGAGAA TCTCAAATTT 61 TTGAACTTGC GTCTACCGAC TCTTTCCAAG TGGGAGGTTG GAGAGGAATC CTTCCCCAAT 121 CTTGAGAAAC TAAAACTGCA GGAATGTGGT AAGCTTGAGG AGATTCCACC TAGTTTTGGA 181 GATATTTATT CATTGAAATT TATCGAAATT GTAAATAGTC CTCAACTTGA AGATTCTGCT 241 CTCAAGATTA AGGAATACGC TGAAGAGATG AGAGGAGGGA GCGAGCTTCA GATCCTTGGC 301 CAGAAGAATA TCCCCTTATT TAAGTAGCAT TATGGTTGAA AAGTAGATTG TACTTTGCAG 361 GGTACATTGT ATATGATTAA GAAAACTTTG TTGCAGTTAT GAAATATTTT TGTGGATTTC 421 TCANNNNANA AAAAAAAAAA AAAAAAAAAA AAAAAAA Predicted gene structure (within gDNA segment 2830 to 4353): Exon 1 3430 3771 ( 342 n); cDNA 1 342 ( 342 n); score: 0.950 PPA cDNA 428 457 MATCH C06HBa0250I21.1-67+ SGN-E544870+ 0.950 342 0.748 C PGS_C06HBa0250I21.1-67+_SGN-E544870+ (3430 3771) Alignment (genomic DNA sequence = upper lines): ATCATCCAGG GAGAAGAATG GAACATGGGG GAGGAAGACA CCTTTGAGAA TCTCAAATTT 3489 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCATCCAGG GAGAAGAATG GAACATGGGG GAGGAAGACA CCTTTGAGAA TCTCAAATTT 60 TTGAACTTGC GTCTACCGAC TCTTTCCAAG TGGGAGGTTG GAGAGGAATC CTTCCCCAAT 3549 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TTGAACTTGC GTCTACCGAC TCTTTCCAAG TGGGAGGTTG GAGAGGAATC CTTCCCCAAT 120 CTTGAGAAAT TAAAACTGCG GGGATGTGGT GAGCTTGAGG AGATTCCACC TAGTTTTGGA 3609 ||||||||| ||||||||| || ||||||| ||||||||| |||||||||| |||||||||| CTTGAGAAAC TAAAACTGCA GGAATGTGGT AAGCTTGAGG AGATTCCACC TAGTTTTGGA 180 GATATTTATT CATTGAAATT TATCAAAATT GTAAAGAGTC CTCAACTTGA AGATTCTGCT 3669 |||||||||| |||||||||| |||| ||||| ||||| |||| |||||||||| |||||||||| GATATTTATT CATTGAAATT TATCGAAATT GTAAATAGTC CTCAACTTGA AGATTCTGCT 240 CTCAAGATTA AGGAATACGC TGAAGAGATG AGAGGAGGGG GCGAGCTTCA GATCCTTGGC 3729 |||||||||| |||||||||| |||||||||| ||||||||| |||||||||| |||||||||| CTCAAGATTA AGGAATACGC TGAAGAGATG AGAGGAGGGA GCGAGCTTCA GATCCTTGGC 300 CAGAAGAATA TCCCCTTATT TAACCGTTAT GATTATCCAA AA 3771 |||||||||| |||||||||| ||| || || | || || CAGAAGAATA TCCCCTTATT TAAGTAGCAT TATGGTTGAA AA 342 hqPGS_C06HBa0250I21.1-67+_SGN-E544870+ (3430 3771) ******************************************************************************** EST sequence 3 -strand 457 n (File: SGN-E544869-) 1 ATCATCCAGG GAGAAGAATG GAACATGGGG GAGGAAGACA CCTTTGAGAA TCTCAAATTT 61 TTGAAGTGGG GTTTACGGAC TTTTTTCAAG TGGGAGGTTG GAGAGAAATC CTTCCCCAAT 121 CTTGAGAAAC TAAAACTGCA GGAATGTGGT AAGCTTGAGG AGATTCCCCC TAGTTTTGGA 181 GATATTTATT CATTGAAATT TATGGAAATT GTAAATAGTC CTCAACTTGA AGATTCTGCT 241 CTCAAGATTA AGGAATACGT TGAAGAGATG AGAGGAGGGA GCGAGCTTCA GATCCTTGGC 301 CAGAAGAATA TCCCCTTATT TAAGTAGCAT TAGGGTTGAA AAGTAGATTG TACTTTGCAG 361 GGTACATTGT ATATGATTAA GAAAACTTTG TTGCAGTTAT GAAATATTTT TGTGGATTTC 421 TCAAAAAAAA AAAAAAAAAA AAAAAAAAAA AAAGGAA Predicted gene structure (within gDNA segment 2820 to 4353): Exon 1 3430 3752 ( 323 n); cDNA 1 323 ( 323 n); score: 0.944 PPA cDNA 423 454 MATCH C06HBa0250I21.1-67+ SGN-E544869- 0.944 323 0.707 C PGS_C06HBa0250I21.1-67+_SGN-E544869- (3430 3752) Alignment (genomic DNA sequence = upper lines): ATCATCCAGG GAGAAGAATG GAACATGGGG GAGGAAGACA CCTTTGAGAA TCTCAAATTT 3489 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| ATCATCCAGG GAGAAGAATG GAACATGGGG GAGGAAGACA CCTTTGAGAA TCTCAAATTT 60 TTGAACTTGC GTCTACCGAC TCTTTCCAAG TGGGAGGTTG GAGAGGAATC CTTCCCCAAT 3549 ||||| | | || ||| ||| | ||| |||| |||||||||| ||||| |||| |||||||||| TTGAAGTGGG GTTTACGGAC TTTTTTCAAG TGGGAGGTTG GAGAGAAATC CTTCCCCAAT 120 CTTGAGAAAT TAAAACTGCG GGGATGTGGT GAGCTTGAGG AGATTCCACC TAGTTTTGGA 3609 ||||||||| ||||||||| || ||||||| ||||||||| ||||||| || |||||||||| CTTGAGAAAC TAAAACTGCA GGAATGTGGT AAGCTTGAGG AGATTCCCCC TAGTTTTGGA 180 GATATTTATT CATTGAAATT TATCAAAATT GTAAAGAGTC CTCAACTTGA AGATTCTGCT 3669 |||||||||| |||||||||| ||| ||||| ||||| |||| |||||||||| |||||||||| GATATTTATT CATTGAAATT TATGGAAATT GTAAATAGTC CTCAACTTGA AGATTCTGCT 240 CTCAAGATTA AGGAATACGC TGAAGAGATG AGAGGAGGGG GCGAGCTTCA GATCCTTGGC 3729 |||||||||| ||||||||| |||||||||| ||||||||| |||||||||| |||||||||| CTCAAGATTA AGGAATACGT TGAAGAGATG AGAGGAGGGA GCGAGCTTCA GATCCTTGGC 300 CAGAAGAATA TCCCCTTATT TAA 3752 |||||||||| |||||||||| ||| CAGAAGAATA TCCCCTTATT TAA 323 hqPGS_C06HBa0250I21.1-67+_SGN-E544869- (3430 3752) ******************************************************************************** EST sequence 1 +strand 453 n (File: SGN-E308524+) 1 TCATCCAGGG AGAAGAATGG AACATGGGGG AGGAAGACAC CTTTGAGAAT CTCAAATTTT 61 TGAACTTGCG TCTACCGACT CTTTCCAAGT GGGAGGTTGG AGAGGAATCC TTCCCCAATC 121 TTGAGAAACT AAAACTGCAG GAATGTGGTA AGCTTGAGGA GATTCCACCT AGTTTTGGAG 181 ATATTTATTC ATTGAAATTT ATCGAAATTG TAAATAGTCC TCAACTTGAA GATTCTGCTC 241 TCAAGATTAA GGAATACGCT GAAGAGATGA GAGGAGGGAG CGAGCTTCAG ATCCTTGGCC 301 AGAAGAATAT CCCCTTATTT AAGTAGCATT ATGGTTGAAA AGTAGATTGT ACTTTGCAGG 361 GTACATTGTA TATGATTAAG AAAACTTTGT TGCAGTTATG AAATATTTTT GTGGATTTCT 421 CNNNNNAAAA AAAAAAAAAA AAAAAAAATA AAA Predicted gene structure (within gDNA segment 2831 to 4353): Exon 1 3431 3771 ( 341 n); cDNA 1 341 ( 341 n); score: 0.950 PPA cDNA 427 453 MATCH C06HBa0250I21.1-67+ SGN-E308524+ 0.950 341 0.753 C PGS_C06HBa0250I21.1-67+_SGN-E308524+ (3431 3771) Alignment (genomic DNA sequence = upper lines): TCATCCAGGG AGAAGAATGG AACATGGGGG AGGAAGACAC CTTTGAGAAT CTCAAATTTT 3490 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TCATCCAGGG AGAAGAATGG AACATGGGGG AGGAAGACAC CTTTGAGAAT CTCAAATTTT 60 TGAACTTGCG TCTACCGACT CTTTCCAAGT GGGAGGTTGG AGAGGAATCC TTCCCCAATC 3550 |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| |||||||||| TGAACTTGCG TCTACCGACT CTTTCCAAGT GGGAGGTTGG AGAGGAATCC TTCCCCAATC 120 TTGAGAAATT AAAACTGCGG GGATGTGGTG AGCTTGAGGA GATTCCACCT AGTTTTGGAG 3610 |||||||| | |||||||| | | ||||||| |||||||||| |||||||||| |||||||||| TTGAGAAACT AAAACTGCAG GAATGTGGTA AGCTTGAGGA GATTCCACCT AGTTTTGGAG 180 ATATTTATTC ATTGAAATTT ATCAAAATTG TAAAGAGTCC TCAACTTGAA GATTCTGCTC 3670 |||||||||| |||||||||| ||| |||||| |||| ||||| |||||||||| |||||||||| ATATTTATTC ATTGAAATTT ATCGAAATTG TAAATAGTCC TCAACTTGAA GATTCTGCTC 240 TCAAGATTAA GGAATACGCT GAAGAGATGA GAGGAGGGGG CGAGCTTCAG ATCCTTGGCC 3730 |||||||||| |||||||||| |||||||||| |||||||| | |||||||||| |||||||||| TCAAGATTAA GGAATACGCT GAAGAGATGA GAGGAGGGAG CGAGCTTCAG ATCCTTGGCC 300 AGAAGAATAT CCCCTTATTT AACCGTTATG ATTATCCAAA A 3771 |||||||||| |||||||||| || || || | ||| | AGAAGAATAT CCCCTTATTT AAGTAGCATT ATGGTTGAAA A 341 hqPGS_C06HBa0250I21.1-67+_SGN-E308524+ (3431 3771) Total number of EST alignments reported: 3 ________________________________________________________________________________ Predicted gene locations (1) in segment 1 to 4353: PGL 1 (+ strand): 3430 3771 AGS-1 (3430 3771) SCR (e 0.950) Exon 1 3430 3771 ( 342 n); score: 0.950 PGS (3430 3771) SGN-E544870+ PGS (3430 3752) SGN-E544869- PGS (3431 3771) SGN-E308524+ 3-phase translation of AGS-1 (+strand): . . . . . . 3430 ATCATCCAGGGAGAAGAATGGAACATGGGGGAGGAAGACACCTTTGAGAATCTCAAATTT I I Q G E E W N M G E E D T F E N L K F S S R E K N G T W G R K T P L R I S N F H P G R R M E H G G G R H L - E S Q I . . . . . . 3490 TTGAACTTGCGTCTACCGACTCTTTCCAAGTGGGAGGTTGGAGAGGAATCCTTCCCCAAT L N L R L P T L S K W E V G E E S F P N - T C V Y R L F P S G R L E R N P S P I F E L A S T D S F Q V G G W R G I L P Q . . . . . . 3550 CTTGAGAAATTAAAACTGCGGGGATGTGGTGAGCTTGAGGAGATTCCACCTAGTTTTGGA L E K L K L R G C G E L E E I P P S F G L R N - N C G D V V S L R R F H L V L E S - E I K T A G M W - A - G D S T - F W . . . . . . 3610 GATATTTATTCATTGAAATTTATCAAAATTGTAAAGAGTCCTCAACTTGAAGATTCTGCT D I Y S L K F I K I V K S P Q L E D S A I F I H - N L S K L - R V L N L K I L L R Y L F I E I Y Q N C K E S S T - R F C . . . . . . 3670 CTCAAGATTAAGGAATACGCTGAAGAGATGAGAGGAGGGGGCGAGCTTCAGATCCTTGGC L K I K E Y A E E M R G G G E L Q I L G S R L R N T L K R - E E G A S F R S L A S Q D - G I R - R D E R R G R A S D P W . . . . . 3730 CAGAAGAATATCCCCTTATTTAACCGTTATGATTATCCAAAA Q K N I P L F N R Y D Y P K R R I S P Y L T V M I I Q P E E Y P L I - P L - L S K Maximal non-overlapping open reading frames (>= 64 codons): >C06HBa0250I21.1-67+_PGL-1_AGS-1_PPS_1 (3430 3771) (frame '1'; 342 bp, 114 residues) 1 IIQGEEWNMG EEDTFENLKF LNLRLPTLSK WEVGEESFPN LEKLKLRGCG ELEEIPPSFG 61 DIYSLKFIKI VKSPQLEDSA LKIKEYAEEM RGGGELQILG QKNIPLFNRY DYPK 3-phase translation of AGS-1 (-strand): . . . . . . 3771 TTTTGGATAATCATAACGGTTAAATAAGGGGATATTCTTCTGGCCAAGGATCTGAAGCTC F W I I I T V K - G D I L L A K D L K L F G - S - R L N K G I F F W P R I - S S L D N H N G - I R G Y S S G Q G S E A . . . . . . 3711 GCCCCCTCCTCTCATCTCTTCAGCGTATTCCTTAATCTTGAGAGCAGAATCTTCAAGTTG A P S S H L F S V F L N L E S R I F K L P P P L I S S A Y S L I L R A E S S S - R P L L S S L Q R I P - S - E Q N L Q V . . . . . . 3651 AGGACTCTTTACAATTTTGATAAATTTCAATGAATAAATATCTCCAAAACTAGGTGGAAT R T L Y N F D K F Q - I N I S K T R W N G L F T I L I N F N E - I S P K L G G I E D S L Q F - - I S M N K Y L Q N - V E . . . . . . 3591 CTCCTCAAGCTCACCACATCCCCGCAGTTTTAATTTCTCAAGATTGGGGAAGGATTCCTC L L K L T T S P Q F - F L K I G E G F L S S S S P H P R S F N F S R L G K D S S S P Q A H H I P A V L I S Q D W G R I P . . . . . . 3531 TCCAACCTCCCACTTGGAAAGAGTCGGTAGACGCAAGTTCAAAAATTTGAGATTCTCAAA S N L P L G K S R - T Q V Q K F E I L K P T S H L E R V G R R K F K N L R F S K L Q P P T W K E S V D A S S K I - D S Q . . . . . 3471 GGTGTCTTCCTCCCCCATGTTCCATTCTTCTCCCTGGATGAT G V F L P H V P F F S L D D V S S S P M F H S S P W M R C L P P P C S I L L P G - Maximal non-overlapping open reading frames (>= 64 codons): none ... finished at: Mon Aug 28 22:04:00 2006