<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-16 14:37:33"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C06HBa0002C17-0oP1n/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C06HBa0002C17-0oP1n/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0002C17-0oP1n/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U320872" ref_strand="+" ref_description="SGN-U320872        Tomato 200607 #1 [10 ESTs aligned] arabidopsis/peptide: | Symbol: None | ubiquitin carboxyl-terminal hydrolase family protein, contains Pfam profile PF00443: Ubiquitin carboxyl-terminal hydrolase | chr3:17685367-17687436 REVERSE | Aliases: T17F15.230(evalue: 6e-70, score=261) genbank/nr: gi|30692943|ref|NP_190373.2| expressed protein [Arabidopsis thaliana](evalue: 5e-68, score=261)">
      <seq>aaggttatgtgtccagaaagctcatttgacgagcttctgaatcttgttgagatgaaccatcagttggcttgcgatcctgaggttggtggatgtgagaaacttaactatattcatcacattctctctgctccaccacatattttcacaacggttttgggttggcaaaatacttgtgaggatgtagatgacataaaagccacattatcagctttatctactgaagtggacatcggcgtcctttatcggggtcttgatccgaaaaacaaacattgcttaacttctgtggtttgctactatggacagcattatcactgttttgcctacagtcatgatcgtggacagtggatcatgtatgatgacaaaaccgtaaaggtaattggtggctgggatgatgttctcgtcatgtgtgagagagggcatttgcaaccgcaggtccttttcttcgaagctgtaaactagtccagtcagcaaatggtacctctctaatagtgaaaagatgatctggatcagcgttggtttctttgaagctgtaatctatttcagcttagaaaatatacctccctaagctgcaacgaagatatgctactgtgctttccattcaatcgctaaggggaacaacgatattatgcattgttgatctgcaaagttacaaaattgtgtaagaaactgtactataccatcagaaaacttgttgacgagatgaagagaaaataggagtagttggcctgatagcgagaaaaacttcttcaaatttgtgtatcatggcggaagttatcagaggattggaaagaaaaatgtaagttctggtgctgttgatacttggtaagcattggtaaaatcaaagatttgcgtcatctgaaaattttggaatccttacaataaggtggcgtggttaaagaaactagtagttgccaccagtttcgtagtcacaaggaatgtgtagatgtttgattttcgagatattgcttctgtacacaggtaatgaatcatattatctttcacttccaatgtaagcaagtctgtatagattggcaattggtctgtagtctcttagtgatgcagtcaaagtcttctaaactctatattcattttgttgtttcttctctgagggaaaagaattttgagtgcccagaagttatgggaactttgtattacgcttgtctacgatatttaatgaaagaggagacaccatatttgctcgtcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0002C17-0oP1n/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0002C17.2" temp_strand="-" temp_description="C06HBa0002C17.2  AC211019.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0002C17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="28435" stop="25301"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28308" g_stop="28306" g_length="3"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="3" r_length="3" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28305" i_stop="28134" i_length="172">
            <donor d_prob="0.974" d_score="0.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28133" g_stop="27986" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="4" r_stop="151" r_length="148" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27985" i_stop="27859" i_length="127">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27858" g_stop="27725" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="285" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27724" i_stop="26606" i_length="1119">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26605" g_stop="26519" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="372" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="26518" i_stop="26442" i_length="77">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26441" g_stop="25598" g_length="844"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="1216" r_length="844" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1217" polyA_stop="1235"/>
      <MATCH_line gen_id="C06HBa0002C17.2" gen_strand="-" ref_id="SGN-U320872" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>1216</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0002C17.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U320872" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28308" e_stop="28306"/>
          <exon e_start="28133" e_stop="27986"/>
          <exon e_start="27858" e_stop="27725"/>
          <exon e_start="26605" e_stop="26519"/>
          <exon e_start="26441" e_stop="25598"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGCATGTTCTGTTGTTTTTTGAGTCAATTTTGAACATAAGTTTCCGTTAGTAAATTTATCTTTTTAAGTTCAATAAGTGACATTGTTTGTACAATGAGCAATTTTCTTTATTGTTATCATGAGGAGTGGGCTAATTTGCACATTTTACAGAGTATTTTGTTTTTTCCTTTCAGGTTATGTGTCCAGAAAGCTCATTTGACGAGCTTCTGAATCTTGTTGAGATGAACCATCAGTTGGCTTGCGATCCTGAGGTTGGTGGATGTGAGAAACTTAACTATATTCATCACATTCTCTCTGCTCCACCACATATTTTCACAACGGGTAACTAGTTTTGATGTTTTCCCCCTTCCCTCCTTTCTCTAATATGTTTTGGTTGCCAAATGGGTAATGTAATTTTATTTAGAGAATCTATTTGTTTCTAATGTGACTTGTTTCTTCCTCCCCACAGTTTTGGGTTGGCAAAATACTTGTGAGGATGTAGATGACATAAAAGCCACATTATCAGCTTTATCTACTGAAGTGGACATCGGCGTCCTTTATCGGGGTCTTGATCCGAAAAACAAACATTGCTTAACTTCTGTGGTAATGTTTCTTTTTCTTTTGTCTGCTGACTTTTTCGTTTATGTATTGTTAGGAAATTAGTATTTGGAATCCCTTAACTAGCTCGAGACAAAATATAATCAAGTCACTGGCACTGAATATACAAATCCATTCATATTTCAGATAGTTCCTGCTGTGGAAAATCTCACACGTTCCTCATCAATGTTATATATTTTCATAAAATCATGCCAATTGGTTTTTGTTCTGCAAATAGTACCTGCCAGCTGGTTAATTTTTATTTTTTTGCGGTTTCAACTAATTGAGGATTACTTTCTGTCATTTCTCATGAAAGAAGTACTCGTGATATTATTGTGCCCTTTTTATTAACTGTATTTTCATGATGTTAAAGAATGACAAAAGTCCCACATCGGTGGTAATGAGATGGGTAGAATCTTTATAAGGCTTAGGTAATTCTCCTTCCTTTGAGCTAGCTTTTGGGTGTGAGTTAGGCCTAAGACCTAATTAACATGGTATCAGAGCAGGGCCCGTCTCACCCGTTGTCGGGGCCCCCAAAATTAAAATTGCCCATGCACCAGATGCTAAAGCATTGGGCGTGAGGTGGGGTGTTAAAGAATGACAAAAGTCCCACATCGGTGGTTAATGAGATGAGTTGACTCCTTATGAGGCTTGGATAATTTTCCTCCCTTTGAGCTAGCTTTTGGGGTTGAGTTATGTCTAAGAACTAATTCAACGCATGATTGATGCATGAATGCGACTATTTGGTCACCACAGGTTTATTTTATTTTTTTGGTATTTCCTTGTTTGTGTCAACAACATATACTGTTTTGCACCCAGAGTTTGGGTCAAAACATATCTGAAATGACATAGCTTTCTTTTTTTGTTCCCATGTGCAGGTTTTTCTCTATTAAGCCTAAATATCTTTGAGATTGTTTTTATTTTTAAAAAAAGAATTTATCTGCATCTGCATTTGCTTAAGCTAAAGGTATCTTTCATGTTGCTAGGTTGAATATAAGAATCACTTTGTAGTACTTTTGGATGTTGAACCATGTTTAGTTTGTAGTTAAACAAGTGTTTATTTAATTCTGATGTTGTTGATACGTCTCTAAAGATGGGATGCTTTTATGACAACATTTGTTTCAGGTTTGCTACTATGGACAGCATTATCACTGTTTTGCCTACAGTCATGATCGTGGACAGTGGATCATGTATGATGACAAAACCGTAAAGGTAATATTCTGTTTCTTCCTATTTTTCTTTGTCATCTTTTACATAAGATTTTTTAATTATGGATATTTTATATTCAGGTAATTGGTGGCTGGGATGATGTTCTCGTCATGTGTGAGAGAGGGCATTTGCAACCGCAGGTCCTTTTCTTCGAAGCTGTAAACTAGTCCAGTCAGCAAATGGTACCTCTCTAATAGTGAAAAGATGATCTGGATCAGCGTTGGTTTCTTTGAAGCTGTAATCTATTTCAGCTTAGAAAATATACCTCCCTAAGCTGCAACGAAGATATGCTACTGTGCTTTCCATTCAATCGCTAAGGGGAACAACGATATTATGCATTGTTGATCTGCAAAGTTACAAAATTGTGTAAGAAACTGTACTATACCATCAGAAAACTTGTTGACGAGATGAAGAGAAAATAGGAGTAGTTGGCCTGATAGCGAGAAAAACTTCTTCAAATTTGTGTATCATGGCGGAAGTTATCAGAGGATTGGAAAGAAAAATGTAAGTTCTGGTGCTGTTGATACTTGGTAAGCATTGGTAAAATCAAAGATTTGCGTCATCTGAAAATTTTGGAATCCTTACAATAAGGTGGCGTGGTTAAAGAAACTAGTAGTTGCCACCAGTTTCGTAGTCACAAGGAATGTGTAGATGTTTGATTTTCGAGATATTGCTTCTGTACACAGGTAATGAATCATATTATCTTTCACTTCCAATGTAAGCAAGTCTGTATAGATTGGCAATTGGTCTGTAGTCTCTTAGTGATGCAGTCAAAGTCTTCTAAACTCTATATTCATTTTGTTGTTTCTTCTCTGAGGGAAAAGAATTTTGAGTGCCCAGAAGTTATGGGAACTTTGTATTACGCTTGTCTACGATATTTAATGAAAGAGGAGACACCATATTTGCTCGTCAAGCAGAAAACCA</genome_strand>
        <mrna_strand>AAG............................................................................................................................................................................GTTATGTGTCCAGAAAGCTCATTTGACGAGCTTCTGAATCTTGTTGAGATGAACCATCAGTTGGCTTGCGATCCTGAGGTTGGTGGATGTGAGAAACTTAACTATATTCATCACATTCTCTCTGCTCCACCACATATTTTCACAACGG...............................................................................................................................TTTTGGGTTGGCAAAATACTTGTGAGGATGTAGATGACATAAAAGCCACATTATCAGCTTTATCTACTGAAGTGGACATCGGCGTCCTTTATCGGGGTCTTGATCCGAAAAACAAACATTGCTTAACTTCTGTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGCTACTATGGACAGCATTATCACTGTTTTGCCTACAGTCATGATCGTGGACAGTGGATCATGTATGATGACAAAACCGTAAAG.............................................................................GTAATTGGTGGCTGGGATGATGTTCTCGTCATGTGTGAGAGAGGGCATTTGCAACCGCAGGTCCTTTTCTTCGAAGCTGTAAACTAGTCCAGTCAGCAAATGGTACCTCTCTAATAGTGAAAAGATGATCTGGATCAGCGTTGGTTTCTTTGAAGCTGTAATCTATTTCAGCTTAGAAAATATACCTCCCTAAGCTGCAACGAAGATATGCTACTGTGCTTTCCATTCAATCGCTAAGGGGAACAACGATATTATGCATTGTTGATCTGCAAAGTTACAAAATTGTGTAAGAAACTGTACTATACCATCAGAAAACTTGTTGACGAGATGAAGAGAAAATAGGAGTAGTTGGCCTGATAGCGAGAAAAACTTCTTCAAATTTGTGTATCATGGCGGAAGTTATCAGAGGATTGGAAAGAAAAATGTAAGTTCTGGTGCTGTTGATACTTGGTAAGCATTGGTAAAATCAAAGATTTGCGTCATCTGAAAATTTTGGAATCCTTACAATAAGGTGGCGTGGTTAAAGAAACTAGTAGTTGCCACCAGTTTCGTAGTCACAAGGAATGTGTAGATGTTTGATTTTCGAGATATTGCTTCTGTACACAGGTAATGAATCATATTATCTTTCACTTCCAATGTAAGCAAGTCTGTATAGATTGGCAATTGGTCTGTAGTCTCTTAGTGATGCAGTCAAAGTCTTCTAAACTCTATATTCATTTTGTTGTTTCTTCTCTGAGGGAAAAGAATTTTGAGTGCCCAGAAGTTATGGGAACTTTGTATTACGCTTGTCTACGATATTTAATGAAAGAGGAGACACCATATTTGCTCGTCAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0002C17-0oP1n/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U344788" ref_strand="+" ref_description="SGN-U344788        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | RNase H domain-containing protein, low similarity to reverse transcriptase (Arabidopsis thaliana) GI:976278; contains Pfam profile PF00075: RNase H | chr5:14575028-14577414 FORWARD | Aliases: None(evalue: 2e-06, score=49.7) genbank/nr: hypothetical(evalue: 5e-23, score=93.2)">
      <seq>gaaaaataagtcagggaaagattgcattaatgcttcctgtcttaccataacatctttccagaatagtattttagctccatttcctcttctgagtttgttgtttcctactagtttggtccagaaggatctcctattgtttccatgttgaaactctatatggcatagtgacctcattggtacaccactgggagtcctggccatacttgtgatgtctaacttctctccaaagagcctgttcttctttcacatatctccacaaccattttatcaagaggcactcgttatggatcctaagatccctaactccaagatcatctgagagcttaggtagctgcactgtttcccagttaattagatagcacccttcctttttttgtttccaaaccatagaaagtctcttctaagctataaaattagagcacatcctgtatttgaatctttgaaacaaagaaatgtgtttgaatcaatcaaatctatttccaagctaatttctgtttctgttagtaacagtgattggtgagctcaatcatctctttccatttcttcattggttaaactttaaaggagcaagtcatcttggttcagataagtgatatagtaattgtggcattacttcgtcatactcaagttgacctgcaatcctctgtagattttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0002C17-0oP1n/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0002C17.2" temp_strand="-" temp_description="C06HBa0002C17.2  AC211019.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0002C17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="30762" stop="29508"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30462" g_stop="29808" g_length="655"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="655" r_length="655" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0002C17.2" gen_strand="-" ref_id="SGN-U344788" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>655</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0002C17.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U344788" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30462" e_stop="29808"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAATAAGTCAGGGAAAGATTGCATTAATGCTTCCTGTCTTACCATAACATCTTTCCAGAATAGTATTTTAGCTCCATTTCCTCTTCTGAGTTTGTTGTTTCCTACTAGTTTGGTCCAGAAGGATCTCCTATTGTTTCCATGTTGAAACTCTATATGGCATAGTGACCTCATTGGTACACCACTGGGAGTCCTGGCCATACTTGTGATGTCTAACTTCTCTCCAAAGAGCCTGTTCTTCTTTCACATATCTCCACAACCATTTTATCAAGAGGCACTCGTTATGGATCCTAAGATCCCTAACTCCAAGATCATCTGAGAGCTTAGGTAGCTGCACTGTTTCCCAGTTAATTAGATAGCACCCTTCCTTTTTTTGTTTCCAAACCATAGAAAGTCTCTTCTAAGCTATAAAATTAGAGCACATCCTGTATTTGAATCTTTGAAACAAAGAAATGTGTTTGAATCAATCAAATCTATTTCCAAGCTAATTTCTGTTTCTGTTAGTAACAGTGATTGGTGAGCTCAATCATCTCTTTCCATTTCTTCATTGGTTAAACTTTAAAGGAGCAAGTCATCTTGGTTCAGATAAGTGATATAGTAATTGTGGCATTACTTCGTCATACTCAAGTTGACCTGCAATCCTCTGTAGATTTTT</genome_strand>
        <mrna_strand>GAAAAATAAGTCAGGGAAAGATTGCATTAATGCTTCCTGTCTTACCATAACATCTTTCCAGAATAGTATTTTAGCTCCATTTCCTCTTCTGAGTTTGTTGTTTCCTACTAGTTTGGTCCAGAAGGATCTCCTATTGTTTCCATGTTGAAACTCTATATGGCATAGTGACCTCATTGGTACACCACTGGGAGTCCTGGCCATACTTGTGATGTCTAACTTCTCTCCAAAGAGCCTGTTCTTCTTTCACATATCTCCACAACCATTTTATCAAGAGGCACTCGTTATGGATCCTAAGATCCCTAACTCCAAGATCATCTGAGAGCTTAGGTAGCTGCACTGTTTCCCAGTTAATTAGATAGCACCCTTCCTTTTTTTGTTTCCAAACCATAGAAAGTCTCTTCTAAGCTATAAAATTAGAGCACATCCTGTATTTGAATCTTTGAAACAAAGAAATGTGTTTGAATCAATCAAATCTATTTCCAAGCTAATTTCTGTTTCTGTTAGTAACAGTGATTGGTGAGCTCAATCATCTCTTTCCATTTCTTCATTGGTTAAACTTTAAAGGAGCAAGTCATCTTGGTTCAGATAAGTGATATAGTAATTGTGGCATTACTTCGTCATACTCAAGTTGACCTGCAATCCTCTGTAGATTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0002C17-0oP1n/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U343905" ref_strand="+" ref_description="SGN-U343905        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein, low similarity to nonmuscle myosin heavy chain (NMHC) (Homo sapiens) GI:189036; contains Pfam profiles PF04780: Protein of unknown function (DUF629), PF04781: Protein of unknown function (DUF627) | chr3:17687622-17692715 REVERSE | Aliases: T17F15.220(evalue: 8e-14, score=74.7) genbank/nr: putative(evalue: 2e-12, score=76.3)">
      <seq>agaagtctaaacatgcccatgaaaagacaaaggacaagaaaaagaaacaagagtatcgaaaagcaaaagattcaaagcctaacagtggtaatgaattgcatgtgcttcaccatgagactgtggatcatgtctcatctccacttgctcatgatggagatgatcaagagagtgaaattcctcaaactggtaattccttagatctacaggaagaggagtacaaacgtatgattgagcttgaagccgaggaaaggaagctagaagaaactttagagtatcaaagaagaattgagaatgaggctaagctgaaacatttggctgagcaacataagagaactgtaagagcagttcaagagaatatggatgcagttacaaatcctgagtcctacccgtatcaaaagtcgagtcctgacacttacttgaagagttgtgatattgatcagaaagtcaacgagcaatggaagagaagtgagaagaacaatgtactattgaacagtgtagaaggtctttcaaagaactttccagaaagaatgtcacaaagagatggattgtcaaacaaaggaactccagaggatggtatattgatgtctgataagcgatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0002C17-0oP1n/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0002C17.2" temp_strand="-" temp_description="C06HBa0002C17.2  AC211019.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0002C17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="34117" stop="32430"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33817" g_stop="33741" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="77" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33740" i_stop="33651" i_length="90">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33650" g_stop="33598" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="130" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33597" i_stop="33484" i_length="114">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33483" g_stop="33141" g_length="343"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="473" r_length="343" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="33140" i_stop="32970" i_length="171">
            <donor d_prob="0.895" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="32969" g_stop="32900" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="474" r_stop="543" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="32899" i_stop="32786" i_length="114">
            <donor d_prob="0.650" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="32785" g_stop="32730" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="544" r_stop="599" r_length="56" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0002C17.2" gen_strand="-" ref_id="SGN-U343905" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>599</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0002C17.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U343905" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33817" e_stop="33741"/>
          <exon e_start="33650" e_stop="33598"/>
          <exon e_start="33483" e_stop="33141"/>
          <exon e_start="32969" e_stop="32900"/>
          <exon e_start="32785" e_stop="32730"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGTCTAAACATGCCCATGAAAAGACAAAGGACAAGAAAAAGAAACAAGAGTATCGAAAAGCAAAAGATTCAAAGGTTTGAGCTGTGGGCCAGATTATTGTTTCTGCAGCAGTTGTTTGGTGTATTGCTGGGGGAAGAATAACTTGTTTCCTCTTACCTGTGCAGCCTAACAGTGGTAATGAATTGCATGTGCTTCACCATGAGACTGTGGATCATGTGTATGTCTCTTCCTAGTTCCTAACGACATATTTCTCCATTTACGTACCCTCTAATTTGGCATCTTAGCAAACCATTTACGCCTTTAATATTTCCAAGTGTATGTTTTGGTGCAGCTCATCTCCACTTGCTCATGATGGAGATGATCAAGAGAGTGAAATTCCTCAAACTGGTAATTCCTTAGATCTACAGGAAGAGGAGTACAAACGTATGATTGAGCTTGAAGCCGAGGAAAGGAAGCTAGAAGAAACTTTAGAGTATCAAAGAAGAATTGAGAATGAGGCTAAGCTGAAACATTTGGCTGAGCAACATAAGAGAACTGTAAGAGCAGTTCAAGAGAATATGGATGCAGTTACAAATCCTGAGTCCTACCCGTATCAAAAGTCGAGTCCTGACACTTACTTGAAGAGTTGTGATATTGATCAGAAAGTCAACGAGCAATGGAAGAGAAGTGAGAAGGTTACATTCTGATTGGCTTTTTACTGTTAGAGAATTTTACATTCTGGATTTCTCATATCATTTAAAGTTATAACTAAGGCCTCGAAATGCCTTGATGTTATTTTCAAGGATGTTGCTAAAATTTGGTTGGCCCTATGAAGTGATTGTAATATTTGACTTTCCTTGATGCAGAACAATGTACTATTGAACAGTGTAGAAGGTCTTTCAAAGAACTTTCCAGAAAGAATGTCACAAAGAGATGGTATCATCTTGATTTGTGAATGGAATAATTTATGCTTCCCAAATAATCTGTACCAACTGTTCCAGGGTTAGGATTATGTCATCTGAACATGCTATCATTTTTTCTCTGATTCAGGATTGTCAAACAAAGGAACTCCAGAGGATGGTATATTGATGTCTGATAAGCGATCT</genome_strand>
        <mrna_strand>AGAAGTCTAAACATGCCCATGAAAAGACAAAGGACAAGAAAAAGAAACAAGAGTATCGAAAAGCAAAAGATTCAAAG..........................................................................................CCTAACAGTGGTAATGAATTGCATGTGCTTCACCATGAGACTGTGGATCATGT..................................................................................................................CTCATCTCCACTTGCTCATGATGGAGATGATCAAGAGAGTGAAATTCCTCAAACTGGTAATTCCTTAGATCTACAGGAAGAGGAGTACAAACGTATGATTGAGCTTGAAGCCGAGGAAAGGAAGCTAGAAGAAACTTTAGAGTATCAAAGAAGAATTGAGAATGAGGCTAAGCTGAAACATTTGGCTGAGCAACATAAGAGAACTGTAAGAGCAGTTCAAGAGAATATGGATGCAGTTACAAATCCTGAGTCCTACCCGTATCAAAAGTCGAGTCCTGACACTTACTTGAAGAGTTGTGATATTGATCAGAAAGTCAACGAGCAATGGAAGAGAAGTGAGAAG...........................................................................................................................................................................AACAATGTACTATTGAACAGTGTAGAAGGTCTTTCAAAGAACTTTCCAGAAAGAATGTCACAAAGAGATG..................................................................................................................GATTGTCAAACAAAGGAACTCCAGAGGATGGTATATTGATGTCTGATAAGCGATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0002C17-0oP1n/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U344496" ref_strand="+" ref_description="SGN-U344496        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: putative(evalue: 7e-51, score=169)">
      <seq>tccatacttttatttgtctctctctttcatgcatctgtggggtgcataatcccctgtacccattacttctctgctcataaatcacagcttccttcttctttttcttcttcccccattccaaacaccctttaaagttgcaacctttcactttcttgatttcttcttttccattaattagtccctgcagatccctgatgtagcccttgttctttcacagcctgctctgagttcaatctcagctggctttctcttgcctaaatcacattcttgattcacaaaaataacaatagtaaagatgcaatctttgatatttttgctgaccaattgataaaggggtttcaagaattcttgttaatatggcctttgcagctcagcagaagaaggctattcattccatgttagcaaacaagctgacccatctcaaaatccctgactcttcttcatcatcatctcctcctcctactgatccagactttgatttttctgatgtttttggtgctcctacctctccttcatcttcttccagttttctaactgacccacanatcattcatagtaggtcccactcttttgtgggtccatctccaaggatcact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0002C17-0oP1n/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0002C17.2" temp_strand="+" temp_description="C06HBa0002C17.2  AC211019.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0002C17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="61563" stop="62758"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61863" g_stop="62458" g_length="596"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="596" r_length="596" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0002C17.2" gen_strand="+" ref_id="SGN-U344496" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0002C17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U344496" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61863" e_stop="62458"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCATACTTTCATTTGTCTCTCTCTTTCATGCATCTGTAATTTGCAAAATCCCCTGTACCCATTACTTCTCTGCTCATAAATCACAGCTTCCTTCTTCTTTTTCTTCTTCCCCCATTCCAAACACCCTTTAAAGTTGCAACCTTTCACTTTCTTGATTTCTTCTTTTCCATTAATTAGTCCCTGCAGATCCCTGATGTAGCCCTTGTTCTTTCACAGCCTGCTCTGAGTTCAATCTCAGCTGGCTTTCTCTTGCCTAAATCACATTCTTGATTCACAAAAATAACAATAGTAAAGATGCAATCTTTGATATTTTTGCTGACCAATTGATAAAGGGGTTTCAAGAATTCTTGTTAATATGGCCTTTGCAGCTCAGCAGAAGAAGGCTATTCATTCCATGTTAGCAAACAAGCTGACCCATCTCAAAATCCCTGACTCTTCTTCATCATCATCTCCTCCTCCTACTGATCCAGACTTTGATTTTTCTGATGTTTTTGGTGCTCCTACCTCTCCTTCATCTTCTTCCAGTTTTCTAACTGACCCACAAATCATTCATAGTAGGTCCCACTCTTTTGTGGGTCCATCTCCAAGGATCACT</genome_strand>
        <mrna_strand>TCCATACTTTTATTTGTCTCTCTCTTTCATGCATCTGTGGGGTGCATAATCCCCTGTACCCATTACTTCTCTGCTCATAAATCACAGCTTCCTTCTTCTTTTTCTTCTTCCCCCATTCCAAACACCCTTTAAAGTTGCAACCTTTCACTTTCTTGATTTCTTCTTTTCCATTAATTAGTCCCTGCAGATCCCTGATGTAGCCCTTGTTCTTTCACAGCCTGCTCTGAGTTCAATCTCAGCTGGCTTTCTCTTGCCTAAATCACATTCTTGATTCACAAAAATAACAATAGTAAAGATGCAATCTTTGATATTTTTGCTGACCAATTGATAAAGGGGTTTCAAGAATTCTTGTTAATATGGCCTTTGCAGCTCAGCAGAAGAAGGCTATTCATTCCATGTTAGCAAACAAGCTGACCCATCTCAAAATCCCTGACTCTTCTTCATCATCATCTCCTCCTCCTACTGATCCAGACTTTGATTTTTCTGATGTTTTTGGTGCTCCTACCTCTCCTTCATCTTCTTCCAGTTTTCTAACTGACCCACANATCATTCATAGTAGGTCCCACTCTTTTGTGGGTCCATCTCCAAGGATCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0002C17-0oP1n/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U345514" ref_strand="+" ref_description="SGN-U345514        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: AT3G08720.1 | Symbol: None | serine/threonine protein kinase (PK19), identical to serine/threonine-protein kinase AtPK19 (Ribosomal-protein S6 kinase homolog) (Arabidopsis thaliana) SWISS-PROT:Q39030 | chr3:2648515-2651164 REVERSE | Aliases: F17O14.19 (evalue: 8e-68, score=253) genbank/nr: putative(evalue: 3e-85, score=317)">
      <seq>cttttgggaaggtttttcaggtgaagatgaaggggtatggtggtgagggtgagggtgatggaatattagccatgaaagtgatgaggaaggacacagtaatcaagaataaccatgtggattatatgagagctgagagggatattctcaccaaagttgagcacccttttattgtgcagcttagatactcatttcagacgaagtctaagctttacttgattttggattttataaatggaggacatcttttctatcatttatacagacaagggattttcagtgaggaccaggcaaggatttatgctgctgagatagtttctgctgtttcacatcttcaccagagagggatcgtgcatcgagacctcaaaccagaaaatattctcatggatggtgatggacatgtcatgctgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0002C17-0oP1n/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0002C17.2" temp_strand="+" temp_description="C06HBa0002C17.2  AC211019.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0002C17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="62355" stop="64959"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62655" g_stop="62848" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="194" r_length="194" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62849" i_stop="64360" i_length="1512">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.866" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64361" g_stop="64443" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="277" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64444" i_stop="64528" i_length="85">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.790" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64529" g_stop="64649" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="398" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64650" i_stop="64790" i_length="141">
            <donor d_prob="0.901" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64791" g_stop="64801" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="409" r_length="11" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0002C17.2" gen_strand="+" ref_id="SGN-U345514" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>409</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0002C17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U345514" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62655" e_stop="62848"/>
          <exon e_start="64361" e_stop="64443"/>
          <exon e_start="64529" e_stop="64649"/>
          <exon e_start="64791" e_stop="64801"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTGGGAAGGTTTTTCAGGTGAAGATGAAGGGGTATGGTGGTGAGGGTGAGGGTGATGGAATATTAGCCATGAAAGTGATGAGGAAGGACACAGTAATCAAGAATAACCATGTGGATTATATGAGAGCTGAGAGGGATATTCTCACCAAAGTTGAGCACCCTTTTATTGTGCAGCTTAGATACTCATTTCAGGTAATAATTGCTTATACTGGACTTAATAAATTTGTCTATTCAGTTTCAGTTTAATGGATTGAAATTTGATGCATAAATAGTTTTACTATCCTGCTATTGTTACCTCTTATGCCTTCATAAATGTTGTGTTTTTTTGCTTTCTTTGAGCCGAGTGTTTATCGGAAATAGCCTCTCTACCTACACTCACCCTCCCCTGACCCCATTCATGGTACTATACTGGTTCTGTTGTTGTTGTTTGTACATAAATACAGGGATATCTTGGTGAGAATAGTGCGTCCACATTAAGGGACTTGGCTAAGTGTTATTCCAGTTATCAATCTGAACTGATGTTACTTGTTTTTCTTTTTCATGTACAAGAACAAGATAATCTTTTGTATTAGGAATTATTTGGTTTCAAGTCAGAAACTAAATTTAGTACTATGGTTATTCGTCCTTTCATTTAATTTTCTGTTACAGAAGTACTTAACAGATGAGGCTTTTCCTTGCCTCTCTCTGTGGGGAAAAGCTTTTCATCAAAAGAGGAAACTCTTTTGGGAATCTGGTTGAATTCTGGTGTCACTCATTCCTTCTTTTTTGAGCTGGGACAACATGAGCAAGTTTTGAACTTTATTAGTACTAGGAGTACTATTTAGCATCATTAATGCTAATGAAATTAATTTCAAGTGGAACTTCTGTTTTTGTCTAGAATCTAGTCAGATTGTTGATATTTGATTGGATCTTTTAGTAGATTTATTTAGACGATATCAGAGAACCTCATTAACTTTTTCTGTCGCGATTTTCTTTTTTTAGTTCCCATTATTATTTGCCTTTGATGCAGAATTGTCTTTGTTTCGGGAATGATCTTTGTGAAGGTTTTTTTGGACAATTTTTCTTTTGAACGGTTTAACTTTTGTATTATAGACCAGTACTTAGGTCGTACTGGAGAACCCATTTACAAATGAAATTATGAGAACAAAGAAGCTAAGAAAATTCAATCCTAACATGAGTCTAAAACTTTTAAGATTGATCTGCATCTACGGGAGCTCTTTGTTCTTCAATAGGAAATAGCAAAACATTGTTTCTATAAAATGCTACTTCTGGCCTCAAAATGTTTGGAATTCCTTTCTTTCCAGATAGCCCACCAATGCAAGCTGGAATGATCCTACAGTAGCTTCTATTTGTTACCCCAATCCCAGCCTCCTCCCAGCTAGAAAGAGTGTCAACAATCTTCCTGGGCATTGTCCAAGATGAATTTTTTTTTTTTTTTGGGCAATTTCAAAGTGAAGTTAATGATTTTGTAGAACTTTTGTTGGTTTTTTCTGTTTAGTTCCCATATTTCTCGATGTCTTTTTTAAGCACGGATTTTGTCTTTCTTTGGTGTACTCATTGTCATTGATTTTGCTACTGTGATTTGATTTTCGAAATCATTGAACTGATGCCTTACAGTCTCAGACCAAGCTTTTTTGCCCTTTGATGTGTTTGTTCTTATTAACAATATCAGTCCTTGATCATTTATTTTGGAATATGCTGCAGACGAAGTCTAAGCTTTACTTGATTTTGGATTTTATAAATGGAGGACATCTTTTCTATCATTTATACAGACAAGGGATTTTCAGGTACCTTTGGTATTTTTTATTGTCTAACCAGTCATAATATGCATTCTGTTCTTCTAACTTCAGCTCTTGGGTGTGCTTTGGGTAGTGAGGACCAGGCAAGGATTTATGCTGCTGAGATAGTTTCTGCTGTTTCACATCTTCACCAGAGAGGGATCGTGCATCGAGACCTCAAACCAGAAAATATTCTCATGGATGGTGATGGACATGTAATAGTCTTGCTGTACTCTACTGCAGGAACATGATTGATCCATGGAAGAAGAAACGAAATAAGAAATATGTAGCATTTTTCCTTTGAACATTGCAGTTGATTCATTCCTCTTCTTAAGCATATCATTTTCTCTACCCAGGTCATGCTGAC</genome_strand>
        <mrna_strand>CTTTTGGGAAGGTTTTTCAGGTGAAGATGAAGGGGTATGGTGGTGAGGGTGAGGGTGATGGAATATTAGCCATGAAAGTGATGAGGAAGGACACAGTAATCAAGAATAACCATGTGGATTATATGAGAGCTGAGAGGGATATTCTCACCAAAGTTGAGCACCCTTTTATTGTGCAGCTTAGATACTCATTTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGAAGTCTAAGCTTTACTTGATTTTGGATTTTATAAATGGAGGACATCTTTTCTATCATTTATACAGACAAGGGATTTTCAG.....................................................................................TGAGGACCAGGCAAGGATTTATGCTGCTGAGATAGTTTCTGCTGTTTCACATCTTCACCAGAGAGGGATCGTGCATCGAGACCTCAAACCAGAAAATATTCTCATGGATGGTGATGGACAT.............................................................................................................................................GTCATGCTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0002C17-0oP1n/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U327735" ref_strand="+" ref_description="SGN-U327735        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: AT3G08730.1 | Symbol: None | serine/threonine protein kinase (PK1) (PK6), identical to serine/threonine-protein kinase AtPK1/AtPK6 (ribosomal-protein S6 kinase ATPK6) (Arabidopsis thaliana) SWISS-PROT:P42818 | chr3:2651453-2654189 REVERSE | Aliases: F17O14.20 (evalue: 4e-16, score=80.1) genbank/nr: putative(evalue: 2e-29, score=130)">
      <seq>gatcaaaagtcacaagtggttccgcacaatcaactggaaaaaacttgatgccagagaactacagcctaagttcaaaccagatgtaattggcagagattgcacagccaatttcgataaatgttggactacgatgccaccggatgactcaccagcatctactccgacaacaggcgaacactttcaaggttacacttatgtagcaccaaatccttggctctcctctagttgatttaagtctttatcctgacaaaattccgaacttttagtttgctattgtaagtcattcttttttagagagaggatcatgagaagtgtatggatcagattgtatcatgataaaagcaaatctttctaactctttttgtgtactattgtaagctcaattcttctttaaaaaaaaaaaaaaaaaaaaactcgagactagttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0002C17-0oP1n/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0002C17.2" temp_strand="+" temp_description="C06HBa0002C17.2  AC211019.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0002C17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="65138" stop="66130"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65438" g_stop="65829" g_length="392"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="392" r_length="392" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="393" polyA_stop="414"/>
      <MATCH_line gen_id="C06HBa0002C17.2" gen_strand="+" ref_id="SGN-U327735" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>392</cumulative_length_of_scored_exons>
        <coverage percentage="0.916" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0002C17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U327735" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65438" e_stop="65829"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCAAAAGTCACAAGTGGTTCCGCACAATCAACTGGAAGAAACTTGATGCCAGAGAACTACAGCCTAAGTTCAAACCAGATGTAATTGGCAGAGATTGCACAGCCAATTTCGATAAATGTTGGACTACGATGCCACCGGATGACTCACCAGCATCTACTCCGACAACAGGCGAACACTTTCAAGGTTACACTTATGTAGCACCAAATCCTTGGCTCTCCTCTAGTTGATTTAAGTCTTTATCCTGACAAAATTCCGAACTTTTAGTTTGCTATTGTAAGTCATTCTTTTTTAGAGAGAGGATCATGAGAAGTGTATGGATCAGATTGTATCATGATAAAAGCAAATCTTTCTAACTCTTTTTGTGTACTATTGTAAGCTCAATTCTTCTTT</genome_strand>
        <mrna_strand>GATCAAAAGTCACAAGTGGTTCCGCACAATCAACTGGAAAAAACTTGATGCCAGAGAACTACAGCCTAAGTTCAAACCAGATGTAATTGGCAGAGATTGCACAGCCAATTTCGATAAATGTTGGACTACGATGCCACCGGATGACTCACCAGCATCTACTCCGACAACAGGCGAACACTTTCAAGGTTACACTTATGTAGCACCAAATCCTTGGCTCTCCTCTAGTTGATTTAAGTCTTTATCCTGACAAAATTCCGAACTTTTAGTTTGCTATTGTAAGTCATTCTTTTTTAGAGAGAGGATCATGAGAAGTGTATGGATCAGATTGTATCATGATAAAAGCAAATCTTTCTAACTCTTTTTGTGTACTATTGTAAGCTCAATTCTTCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0002C17-0oP1n/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U314475" ref_strand="+" ref_description="SGN-U314475        Tomato 200607 #1 [5 ESTs aligned] genbank/nr: gi|62733650|gb|AAX95766.1| putative DNA binding protein [Lycopersicon esculentum] (evalue: 1e-53, score=213)">
      <seq>gtcgatctagcctctttgatatcaccactgactcggtattcattttttattcatgtcttccatttatcaaacttgtttctcacccttattattaatcgagtgaaatctaacaatttctttgaattactacaattatatttctctcattttgccatttattggtgaatttcctttgagtaggtggtaagtgattgtgtatagagagagaaaattagatggtttgattttaatacttcgatcttatcactctttaacagaaggagtagtaatgtgattctttcattgttcttgttttgaattgatattgatgctgggtttttgttgttattcttttgtgtcttttctctaatagattctttttcattggtgtcaagttctttgtttatacttgccttctggaaaagatagaaatattgaattctgatgaatacaaactgccacttggatattttgtttttcagattttccatttctaaggttctctttctatgacaagcaggtatcagtaatgccaatagaagaggtggaaaataagcaagaaatcccagttccagcaccagcaacattacctcctgtagaaactaccaaaaccaatgcattttcggtggcaccggctgttgctcctatcatatttccagtacaggttaataagtcaagagagaatccaactctgtttcgacatgatcatgcgaattcatcgatgctagttggtcctgttcctatgttttcaatgcctaatccatcaaaatcgatcgaccttaacgccaaccacaattcaacaatcgaaccatcgtcgttgtcactgagattatcattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0002C17-0oP1n/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0002C17.2" temp_strand="-" temp_description="C06HBa0002C17.2  AC211019.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0002C17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="71156" stop="69740"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70856" g_stop="70040" g_length="817"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="817" r_length="817" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0002C17.2" gen_strand="-" ref_id="SGN-U314475" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>817</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0002C17.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U314475" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70856" e_stop="70040"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCGATCTAGCCTCTTTGATATCACCACTGACTCGGTATTCATTTTTTATTCATGTCTTCCATTTATCAAACTTGTTTCTCACCCTTATTATTAATCGAGTGAAATCTAACAATTTCTTTGAATTACTACAATTATATTTCTCTCATTTTGCCATTTATTGGTGAATTTCCTTTGAGTAGGTGGTAAGTGATTGTGTATAGAGAGAGAAAATTAGATGGTTTGATTTTAATACTTCGATCTTATCACTCTTTAACAGAAGGAGTAGTAATGTGATTCTTTCATTGTTCTTGTTTTGAATTGATATTGATGCTGGGTTTTTGTTGTTATTCTTTTGTGTCTTTTCTCTAATAGATTCTTTTTCATTGGTGTCAAGTTCTTTGTTTATACTTGCCTTCTGGAAAAGATAGAAATATTGAATTCTGATGAATACAAACTGCCACTTGGATATTTTGTTTTTCAGATTTTCCATTTCTAAGGTTCTCTTTCTATGACAAGCAGGTATCAGTAATGCCAATAGAAGAGGTGGAAAATAAGCAAGAAATCCCAGTTCCAGCACCAGCAACATTACCTCCTGTAGAAACTACCAAAACCAATGCATTTTCGGTGGCACCGGCTGTTGCTCCTATCATATTTCCAGTACAGGTTAATAAGTCAAGAGAGAATCCAACTCTGTTTCGACATGATCATGCGAATTCATCGATGCTAGTTGGTCCTGTTCCTATGTTTTCAATGCCTAATCCATCAAAATCGATCGACCTTAACGCCAACCACAATTCAACAATCGAGCCATCGTCGTTGTCACTGAGATTATCATTG</genome_strand>
        <mrna_strand>GTCGATCTAGCCTCTTTGATATCACCACTGACTCGGTATTCATTTTTTATTCATGTCTTCCATTTATCAAACTTGTTTCTCACCCTTATTATTAATCGAGTGAAATCTAACAATTTCTTTGAATTACTACAATTATATTTCTCTCATTTTGCCATTTATTGGTGAATTTCCTTTGAGTAGGTGGTAAGTGATTGTGTATAGAGAGAGAAAATTAGATGGTTTGATTTTAATACTTCGATCTTATCACTCTTTAACAGAAGGAGTAGTAATGTGATTCTTTCATTGTTCTTGTTTTGAATTGATATTGATGCTGGGTTTTTGTTGTTATTCTTTTGTGTCTTTTCTCTAATAGATTCTTTTTCATTGGTGTCAAGTTCTTTGTTTATACTTGCCTTCTGGAAAAGATAGAAATATTGAATTCTGATGAATACAAACTGCCACTTGGATATTTTGTTTTTCAGATTTTCCATTTCTAAGGTTCTCTTTCTATGACAAGCAGGTATCAGTAATGCCAATAGAAGAGGTGGAAAATAAGCAAGAAATCCCAGTTCCAGCACCAGCAACATTACCTCCTGTAGAAACTACCAAAACCAATGCATTTTCGGTGGCACCGGCTGTTGCTCCTATCATATTTCCAGTACAGGTTAATAAGTCAAGAGAGAATCCAACTCTGTTTCGACATGATCATGCGAATTCATCGATGCTAGTTGGTCCTGTTCCTATGTTTTCAATGCCTAATCCATCAAAATCGATCGACCTTAACGCCAACCACAATTCAACAATCGAACCATCGTCGTTGTCACTGAGATTATCATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0002C17-0oP1n/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U337475" ref_strand="+" ref_description="SGN-U337475        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | transportin-SR-related, contains weak similarity to transportin-SR (GI:5052414) (Homo sapiens) | chr5:25140537-25149893 REVERSE | Aliases: K19B1.1, K19B1_1(evalue: 5e-103, score=237) genbank/nr: gi|62733653|gb|AAX95769.1| expressed protein, 5'-partial [Lycopersicon esculentum] (evalue: 9e-61, score=237)">
      <seq>acaatcggagcgtattcaaagtggcttgatgcttcatcaaatggattttcacatttgcccacactcattgatattcttgtgagaggcatgagcacgtgtgaagattccgcagctgcagctgctttagctttcagacacatatgcaatgattgcaagaagaagctttgtgggtcactagatggtctgtttcaaatttaccaaacggcagtcattggggaaggtcccttcaaagtttccgcggaagattcgttgcatctggttgaagctttaagtatggttattacagagcttccttcggaacatgctaagaaggcacttgaggcagtatgcctgccatctgttgctcagttacaagagatgatcaatcaaggtccccaagttttggggcaaaaaaatgctcgggaattaactgttcattttgatcgacttcaaatatatttagatatgtaaatcacccagaagcggttgcagatgcaattcaaaaactttggccaatattcaaagccatttttgatgttcgtgcttgggacatgcggacgatggagtctctttgccgggcttgtaaaaatgctgtacgaacttctaagaggctcatgggggttacaattggggcgatgctggaggaaatacaaggactatatggacaacaccatcagccgtgttttctttatctctctagtgaagtcattaagatatttggttcagatccatcctgtgcaaattacttgaaagttctcattgagtctctctttagccatacagcatgtcttcttacaaagattcaggatttcccttcccgtccggatatagcagatgattgttttttgctggcatcaagatgtatccgataatgtcctcaactattttttccctccactggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0002C17-0oP1n/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0002C17.2" temp_strand="-" temp_description="C06HBa0002C17.2  AC211019.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0002C17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="82335" stop="78482"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82035" g_stop="81888" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="148" r_length="148" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81887" i_stop="80457" i_length="1431">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.915" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80456" g_stop="80333" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="272" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="80332" i_stop="80210" i_length="123">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80209" g_stop="80128" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="354" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="80127" i_stop="80056" i_length="72">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="80055" g_stop="79967" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="442" r_length="88" r_score="0.989"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="79966" i_stop="79886" i_length="81">
            <donor d_prob="0.982" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="79885" g_stop="79811" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="517" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="79810" i_stop="79720" i_length="91">
            <donor d_prob="0.830" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="79719" g_stop="79665" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="518" r_stop="572" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="79664" i_stop="79245" i_length="420">
            <donor d_prob="0.377" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="79244" g_stop="79125" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="573" r_stop="692" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="79124" i_stop="79041" i_length="84">
            <donor d_prob="0.866" d_score="1.00"/>
            <acceptor a_prob="0.199" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="79040" g_stop="78948" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="693" r_stop="785" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="78947" i_stop="78878" i_length="70">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.156" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="78877" g_stop="78782" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="786" r_stop="881" r_length="96" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0002C17.2" gen_strand="-" ref_id="SGN-U337475" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>882</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0002C17.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U337475" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82035" e_stop="81888"/>
          <exon e_start="80456" e_stop="80333"/>
          <exon e_start="80209" e_stop="80128"/>
          <exon e_start="80055" e_stop="79967"/>
          <exon e_start="79885" e_stop="79811"/>
          <exon e_start="79719" e_stop="79665"/>
          <exon e_start="79244" e_stop="79125"/>
          <exon e_start="79040" e_stop="78948"/>
          <exon e_start="78877" e_stop="78782"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAATCGGAGCGTATTCAAAGTGGCTTGATGCTTCATCAAATGGATTTTCACATTTGCCCACACTCATTGATATTCTTGTGAGAGGCATGAGCACGTGTGAAGATTCCGCAGCTGCAGCTGCTTTAGCTTTCAGACACATATGCAATGGTAAATACTTCGTTCAGTTTCTCATGTTTGTATTTATTTTTCTTTTAGTGTTACTTGTAGTAATTCTGCCTTTTATCCAAAAAAAAATTGATACTCCACCCTTTTTGTTAAAGAACTGATTATTTTTCTATGATCATTCTATTTTATTTATTTTCAAGAGATCTCTAATATTTGATAATTGATGAAAGTTTACCACTTCATGGTTGGGCTTTGTCAACGATATAATTAATATCTGTGAGACTAGTTGGTGGATTATGATACACCTCTTGTTTCAAATTCACATCCAGTTTATCTGTGGCAGCTATTTCATAAAGACAACTTGGAAAAGAGCCAAAAATATCTCTATCCTAGGGAAAAAGGCTCAACAACACCATCCATCCACCTTTTGATCTGAATTACCCCCAATCTATTTTTTTCTATTTTGTTCGGACTCTTCAAAAATATCAATGGGAGCGTGTCAGATGTTCTAAAAGTAGTGTGTTTTTGGTAAATCCGACAAGGGTGCAGCATCGAAAGTGAAGAGTCCGTGCAACTTATATTTTATATTAAAATACCTCAAACTAAAACCTTAAACTTGATTGTTTTTCCTAATTTTTTTTAAAAAGCCATGTGATCTATTTTGATTGACCAAAATATTACTTATTTCAAAAATTAATCCCACCCATTTCGTTAATCTAAACTTGCCCCAAATAATCTGGTTCGTTCTTTATAATCTAAAATCACCCGCTGATATTTTTATTCCACCCATTTAAACTCTTGTAAATATTCTATAGAAGCCACAAAGTCTTGCAACTCTGAATCTCTCTCCTAGCCAGGTGATTGAGCCTCTGTTTTCCCCTCTTGGATCCCCAACTCAAGCTATCCAACAACTTGGAACTGAATTGTTATCTCATCTCTTTGCACATGAGCATTTTAAGCAGGATACAAACAAGAAAAGCAGTAGTGTCTCTTGTGCAGCTAGCAGGCATTGGTATTTTGAACTTGCAACAGACATCAATTAGGGTCAGATTATTAGGCGCGAGTTTGAATTAAAAAAATGGGTGGCTTTAATTTTTAAATAAAGTAATGTAAGTGGCCAATCAAAATAGCCATGTGGCTTTTTTAAAAACTAGTAAAAATCATCAAGTTTAAGGTGTTAGTTTAGGGGTATTCTTGAGCAAAAAAAAAACATATAGGTTGAGGGTATTTTTAGACCAAAAGGTGGATGAAGGGTATTGATGAGCCATTTTCCATAGGATAGAGGTATTTTTGGCCCTTTTCTGAATAGAATTTTAGGATCAATTTTTTCTTAACTTTGCGAAATTGTATCTTGGTTACTCAGTCCATCTGAAATGACCTGGTGAATTTGCTCCTTCTCAGAGTTAAACATTCTGGCCAGAGTTAATAGTTCTTTAGTTCAATCTCGTTTCAATCTTTTTACTGTCATTGTAGATTGCAAGAAGAAGCTTTGTGGGTCACTAGATGGTCTGTTTCAAATTTACCAAACGGCAGTCATTGGGGAAGGTCCCTTCAAAGTTTCCGCGGAAGATTCGTTGCATCTGGTTGAAGCTTTAAGGTATTATCTAATGCTTAGAAGCTGATCCCTAAGTTAGTTAAGTTCTTTATCTTGTTAAATCCTTACTCTCACCACCCACTTTCCAAGTAAACACACTGGTCTTTTTTCTTCTTTTTTTTGCAGTATGGTTATTACAGAGCTTCCTTCGGAACATGCTAAGAAGGCACTTGAGGCAGTATGCCTGCCATCTGTTGCTCAGTTACAAGTAAGTTTCCTTTCTAAAATTTTATGAATAACTTTAAGTATCAATTTACAAATACTTGGAGTTAACTTCCAGGAGATGATCAATCAAGGTCCCCAAGTTTTGGGGCAAAAAAATGCTCGGGAATTAACTGTTCATTTTGATCGACTTGCAAATATATTTAGGTACAGGAAATTTCCTTGTTCCGTCTTTCATCTATTTGCTTCTATTTGCATTGTCAATTTTGGGACTGAAACCATTTGCAGATATGTAAATCACCCAGAAGCGGTTGCAGATGCAATTCAAAAACTTTGGCCAATATTCAAAGCCATTTTTGATGTGTAAGAAAGCTGTATGCTGTAAATATTGCTTTTAGGATAACTCTTTGATTATAAATTTCCCTAATGGTATTGTTTGATGATATTCACATAGTCGTGCTTGGGACATGCGGACGATGGAGTCTCTTTGCCGGGCTTGTAAAAATGCTGTAAGTTCAGTTATCTATGCCATCCCCTGCCAAGGGATCCAGGAAATCATTCATCAAGCTTCCTATTCCTGAAAAATGTTGTAGTGACACAACTTCTCCTGTAAATATGTGGCGTTTTTCATAGTCCTTCGAATACTTCGTGTTCTTCTCTTCTTTATTCTTGTGCCTCTTGACATCTACATCCGGAGCTGATTTTTTTTCTTCTTTCTGTGAATTTCTGCTGACTTATGTTGCTTAACGTATGACCTCAAACTGCTTTTATGTTACTCTTTGAAATTGTGATTGATAATGTTCTCTACAGCTTATTTAAAGTGGTGTGTTCTGAACTCTGAAGACAAGTATCATCAAGATTCTAGTCTGAGCCCGACAATGAGCAAATGGTATTATGACTTTCCTAACTATGATGATTTCATCCATTAGGTACGAACTTCTAAGAGGCTCATGGGGGTTACAATTGGGGCGATGCTGGAGGAAATACAAGGACTATATGGACAACACCATCAGCCGTGTTTTCTTTATCTCTCTAGTGAAGTCATTAAGGTATTTGAGTTCTTTCTTGCATTGCAAAATTTTAACCAAATTTGCAGTTTCCATTTTAAGCAACAGTTGGACCTTCTGCCGCAGATATTTGGTTCAGATCCATCCTGTGCAAATTACTTGAAAGTTCTCATTGAGTCTCTCTTTAGCCATACAGCATGTCTTCTTACAAAGATTCAGGTACAGTCTGTTGCTTTATTTTGCATTTCACCGCTAGTTATGTAAGCTAACTCCGAAGTGTGGTTCACAGGATTTCACTTCCCGTCCGGATATAGCAGATGATTGTTTTTTGCTGGCATCAAGATGTATCCGATACTGTCCTCAACTATTTTTTCCCTCTACTGTG</genome_strand>
        <mrna_strand>ACAATCGGAGCGTATTCAAAGTGGCTTGATGCTTCATCAAATGGATTTTCACATTTGCCCACACTCATTGATATTCTTGTGAGAGGCATGAGCACGTGTGAAGATTCCGCAGCTGCAGCTGCTTTAGCTTTCAGACACATATGCAATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCAAGAAGAAGCTTTGTGGGTCACTAGATGGTCTGTTTCAAATTTACCAAACGGCAGTCATTGGGGAAGGTCCCTTCAAAGTTTCCGCGGAAGATTCGTTGCATCTGGTTGAAGCTTTAAG...........................................................................................................................TATGGTTATTACAGAGCTTCCTTCGGAACATGCTAAGAAGGCACTTGAGGCAGTATGCCTGCCATCTGTTGCTCAGTTACAA........................................................................GAGATGATCAATCAAGGTCCCCAAGTTTTGGGGCAAAAAAATGCTCGGGAATTAACTGTTCATTTTGATCGACTT-CAAATATATTTAG.................................................................................ATATGTAAATCACCCAGAAGCGGTTGCAGATGCAATTCAAAAACTTTGGCCAATATTCAAAGCCATTTTTGATGT...........................................................................................TCGTGCTTGGGACATGCGGACGATGGAGTCTCTTTGCCGGGCTTGTAAAAATGCT....................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGAACTTCTAAGAGGCTCATGGGGGTTACAATTGGGGCGATGCTGGAGGAAATACAAGGACTATATGGACAACACCATCAGCCGTGTTTTCTTTATCTCTCTAGTGAAGTCATTAAG....................................................................................ATATTTGGTTCAGATCCATCCTGTGCAAATTACTTGAAAGTTCTCATTGAGTCTCTCTTTAGCCATACAGCATGTCTTCTTACAAAGATTCAG......................................................................GATTTCCCTTCCCGTCCGGATATAGCAGATGATTGTTTTTTGCTGGCATCAAGATGTATCCGATAATGTCCTCAACTATTTTTTCCCTCCACTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0002C17-0oP1n/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U315590" ref_strand="+" ref_description="SGN-U315590        Tomato 200607 #1 [34 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr3:17665064-17666984 REVERSE | Aliases: T23J7.180(evalue: 5e-34, score=142) genbank/nr: gi|15228266|ref|NP_190369.1| expressed protein [Arabidopsis thaliana] gi|7487369|pir||T07724 hypothetical protein T23J7.180 - Arabidopsis thaliana gi|4741202|emb|CAB41868.1| putative protein [Arabidopsis thaliana] gi|16226347|gb|AAL16142.1| AT3g47850/T23J7_180 [Arabidopsis thaliana] gi|21436041|gb|AAM51598.1| AT3g47850/T23J7_180 [Arabidopsis thaliana](evalue: 4e-32, score=142)">
      <seq>ggcgattggcggccaatcggccgaattggaattgaaagggcaaattgggcgaaaatggtggcactatcactgtacaagggaaatctccacagagtacctgaaactccacggcgatggctagtgccaacccccaaaatctctcataaggacttccaatgtctcctccgtcgccggtcccgagccctctctcgcctccaaaatcctcccgatgtctctcctaccaccgccaccgcttcaaaccctaaccctaacctcaaaactgataccaaatccaaacctgaggatgaggttcctgtttcgattccagtgaagatcgagaaggaggaagaggatgttcgagtggagaatgtgaaagagccggagaaattggttgattcatctgctgtcgtggttgaacctaagcttgaggttttggaaaacgatcagaaattggagggtcaggtgaatccctctggtgtggagactagcaacaaagaggatgcaactgataatcagaaaagaaaggagattgaggataaattacaagttctgaatatgaaaaagcatggtttggtacaattactaaaacagattttgaatgcagaagaggagctgaagagacgaagcatgcaaggaatggcagtgcggccatcacccccacttcaagtggatacaacaaacgacactggatctataactaaactaaacacacctagaatgggcttggatggtaaccccatcggtgaggtggatggagatggaggtgatgatgcatccaaccagaacacacttcctcggaatttgcttcgtttgagcagtacatcaccatcttcagattctcaactgaggaagaccccctataatgtggttcctctcgcttcacgatctgttggagttactgttagtccttcacggtttgcacctccgggacagcaagggcaaccttcaagtctccccccagtgtccttatctggaacgaacattgttgcctcctctccttctcctgtagcatcaggcggcacttcagcatttcgagatcggtttgcaagcccatgaaaatgggagttgtgctagttgttactcctcctgtcagctggctttctgttctctcaacctcattctaagtttcaactggctaatctatgaagctgtaaattattctgtagttccaaattggtcattcgctgtaacggtagcagtgacgatgcagtgtctttaagtctggtgccttctagttggaagtatagtatttccgttaatctggctgggtgtgtgtccatccgatacttgtgaagtttcccatggtcatgtttttagttcttaaaagatgttagaactgaatatcctatgtacatatattatgccattttgcttttaagtcgtttagttgtattaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0002C17-0oP1n/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0002C17.2" temp_strand="+" temp_description="C06HBa0002C17.2  AC211019.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0002C17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="94357" stop="104727"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94663" g_stop="95095" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="462" r_length="433" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95096" i_stop="100536" i_length="5441">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100537" g_stop="100644" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="570" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="100645" i_stop="100780" i_length="136">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="100781" g_stop="101056" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="571" r_stop="846" r_length="276" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="101057" i_stop="103899" i_length="2843">
            <donor d_prob="0.934" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="103900" g_stop="104426" g_length="527"/>
          <reference_exon_boundary r_type="cDNA" r_start="847" r_stop="1373" r_length="527" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1374" polyA_stop="1407"/>
      <MATCH_line gen_id="C06HBa0002C17.2" gen_strand="+" ref_id="SGN-U315590" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1344</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0002C17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U315590" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94663" e_stop="95095"/>
          <exon e_start="100537" e_stop="100644"/>
          <exon e_start="100781" e_stop="101056"/>
          <exon e_start="103900" e_stop="104426"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTGAAAGGGCAAATTGGGCGAAAATGGTGGCACTATCACTGTACAAGGGAAATCTCCACAGAGTACCTGAAACTCCACGGCGATGGCTAGTGCCAACCCCCAAAATCTCTCATAAGGACTTCCAATGTCTCCTCCGTCGCCGGTCCCGAGCCCTCTCTCGCCTCCAAAATCCTCCCGATGTCTCTCCTACCACCGCCACCGCTTCAAACCCTAACCCTAACCTCAAAACTGATACCAAATCCAAACCTGAGGATGAGGTTCCTGTTTCGATTCCAGTGAAGATCGAGAAGGAGGAAGAGGATGTTCGAGTGGAGAATGTGAAAGAGCCGGAGAAATTGGTTGATTCATCTGCTGTCGTGGTTGAACCTAAGCTTGAGGTTTTGGAAAACGATCAGAAATTGGAGGGTCAGGTGAATCCCTCTGGTGTGGAGGTATTGAATTGCAATTATTGATCTATTTTGTTTGTATGGTGTTATCCATGGATTTTGCTGGCTTTAGTTATGATTCGCTTATGCATCTTTCTGTTTTCTCTTAGTAAGGAAGGGATCCCAGCCAATTCAGGGTAGAAGTTAAGGGTGTGTATACCTTACGAAGCTTTTTACCCTTTTTGCGATGAGGCTGCTCCAAGTCTGGACTCTCCAACCATGACCTACAGCTTTTCCTCATTTTTGTTTATTATGTTTAGGAATTCTTAATATATGTCAATAAAAAAATATGTATCAGATGATTTGTAAGAACTAATACTGTTTATTTCTATGGAAGAGCGTAATGATATATGTGTAGTTGGTTTAAGACTAGCATTTTTTTAGCAGAAGCGTCATGTACTGATTAGAGATGAGGAGGTATATTTGCCTGAGGGTTGGGATACTTACATTAGATCTGTTCGGGGGATACTGCTTTCAGAAATTAAGGATAAATGGAGAGACAGTGAATGCTACATGCTACATTGGATTTATGGAGATAGGGAGAAGAGTCGTTCTTTCCGTATAGGGTGCCCATGAAGGTGTGTTTCCTTGCTTGATTAGGGGCGGGTGAAGTGATATTGATGGCTGAGAACATGAGATAGAAAAGGAGCACCTATGTTGGTGTTACATCTACAGATGTTTGGGTGAATACGTAGACCTGTCTCCTGTTACATTTTCAGGTGGTTGTGCACTCATTGTTGGCAATTCTGAATCGTTTGGTGGATACATGAGTATTTGTCAGAGTTTCTCTATATCGGAAGCAATCTGTAATTCCAGACTTTTCACCTACTCGTTTAACCGGAACCCAACATACTAAATTTAAGAGAATATCAAATATGAAGTCGGTCGCTTTCACAAAACTTTAGACGTTCCCAGTTACTTCTTTACTGACACAAGCCAAAACCAAATTTACAAGACCGACACAAGGAGGAAAACTCTAGGATTTAAGCAAAATAATATACTATATTAGTCTAAATAGAATGATGTCCCATGCGAGGTAAGTGCGGAGCTTGTTAGCTCTGTGACTCTGTATGAGTCAAAGTGTCACCCTTAAATGAATTATCTTTGGGGGGGGGGGAGGAGTTGGATTCAGTTGCACTAATTGCGTGAGTAATAACATCAACCATACATTTTATATGGAGCAGGTATACATAAGGAATCATGCAATTTATAAGATCCTCAACTATGTCCTACTTAAATCAATATAGCCTAAGTTGCTCGGGTGTGGTTTCCGATAATGCGGACCTAGAGCTCAAATCCTATATGATCTAAATTTTTAGATTTGGGTATATGGATCCATGTATGGATATGGGAGCGGGGGTTCGGCTAAAAATAATTCAAATAGCTAAAAATAGAGTTATAAAGCCTAAGTTATGAGATATTATATGGACGTCTTGAGATGAAAATGTTGATCAAGAGGAGAAAGAGATAAAAGGAAAAAGAGTGACAATAGAAATTAATATATCCAAGGTATTTCATTTCTTCAATTTCACCTTAATTTTTGTTTTGCGCATATAAATCATTGAATCTGTCCAAATTTCTCCCTCAAATTTGGTTTAAGTATCCCAAATTGGTTGACCATATCGTTTACGGATGCCACACCATCACTCACACCCGTTTCGTGTCGACATGGGTGCGAGAACAAAGGCGAAGAGTCCGTGCAACTTAGGATATAACCATTGTTGTGAAAAGCGCAGAAAAAGCGCGCTTCAAAGCGACACGACCCTTGTGCGCTTTTTTATCTTGAGGCGAGGCGATCTGAAGAAAACTCTCGCTTCAGATGAAGAAGCGACCCTAAGGCAAAAGCGCAATAAAGCGCGCTTTTTATAAAAAAAAAGCGACAATTAGTTTTTTTTTAATAAAAAAATTAGGTTTTTTTTTATAAAAAAATCTGAAATATAACCTTCTCTCTCCTCACGACTCTTTTCCTTCTTTCTCTTCTCGCAACTCTTCTTTCACAACACTTCTTTCCCTTCTTTCTCTCCTCGCAGCTCTTCTTTCACAATACTTCTTTCCCTTCTTTCTCTCCTGACGATCTCGACTGAGTCTGCCTCTTTCTTCAACCTCGACTGTAGGTAACTTTTTGTTCATCTCTTTTTTAGCTAATGTTTATTAGTTCATCTCTATGAGTTTCTTTTCTCCTGAAATATCAATCTTTGCCTGTGCTTCATCTCTTCATCTCTCTGAGTTTCAACTACTCTAGTTTTTTCTTCTTCTTCTCTTCTTTTCTTCATCTCTGCTGCTTGCTCTGTTTCTAATTACTGACTGCTGCCTCCTCTGTTTTTTTTTTCTTCAATTCTTTTGCTTTTTTTTATTTTTTTATTTTGTGATCAGTCTAGCAGCCTTGTTGAAGAATAGGAGTTTGAATCTTTGTGACTTAATTATATTTTTGATTTTTTGCTTTATATGTTATGACTTATGAGTATTTTTGCCTATGTAATTTCTTTCAATCTAAGACTATATTACCTCTATTTAGTTATTTAATATTTTTTATTTTTATACTAAATGTCGCTTTTTTTTTCTAAAAAAAAGCGCGCTTCGCTTCTGTGAAGCAAGCCTTCGTAGCTTTTTTCCGCTTCTCGCTTCCCAAAACACGGATATAACAATTCGTGTGTGAAATAAATGATCAAAATGGATGAAAATATACATTTTAGATCCATTTATCCTTTTCTACTTAATATCCTTATATAGTGGGAGATACATTAACCAAAATCGATGTAAATTTGGACACCACAAGTCTATCATGGCTTTCTGACTATCCCATCAGCTAGGTTCCCTTCTAGAGGGCTCAAGTGTGATATTCATATTACTGGTTCTTTCCTGCTAGTATAGGAAAATATTATACAAGGTGCGACCATGTCTAGTGACCTCAACGTTAGATGATAGTGATCTAGCAAAGCTTACTCCTGAAGTATCTTCCTTACAACAACAACATACCCAGTATGATCCCACATAGTTAGGGTCTAGGGAAGGTAGAGTTTACACAGAACTTAACCCTACCTCAGAGGTATTGAAGTATCTTCCATATAAGACAAAATGTTGTCATATTTTTTTGTGTTAAGAATTTATTCCAATAGTATATATAGCAACTAGGTTTAAGGATAATCAATATGTCAAAGTCATTATAAAGATGATTTTGTACATTTCCAATTGTGGACCATACTTTCACTTGTTCGTGTGCAGGTAATCGATTTGTTTTTTATAAATCGTTTCAATGCAAGAATACAAACTCAAAATTATGCTATAATTGAAATTCAACTATGAAAGAATTATAACTCATAGTACTATTGCTGAAAACTCCAATTTGATAATTGCGTCGTCAAAGTATCAAATATCTTATAATAGGTCATAACTTTGTATCTTAATCATTCATAGAACTTGTGAAATTCCATGTTTTTAGCAATAAGATCTCAATTTCCCAATTCGACTCTAACATTAACTCTTAACATTAAGTCGATGTGGGTTTATTAGTTTGGCTGTATTCTCCATTCTAAAAAAAGTTTATCAGGAATCCTAAATAGCAAATGATGAAACTGCTAGTTCAAGAATAAAGACAAAACTTGTGTTTATATCATGTTACTCCGAGCCAACTTTAAATAAAGTGTTGTCTTAGCAGTTAGCACCGTTTCGGGAAAAATATATTTTCGATCATCAAGTTTGAAACCTAAATCAACTTCTTCCCCAAATTGAAAGCTTCTTTAAAATTCCAGATTATTGCCTCCTCAAATCTCCATTTATGAACAAGGTATTTTAACTTTTGATATAATGTTGAATCTAGTGCTGAATACCTCATTAATTTAAGGTCGCTTCACTCCTATTTCCTACTGTTTTATACCCTAAAGAAGAATTTAGTTAGTTGAATATGGTTTTAAAGAGTGACCTGAATTGTGATTACAGCAAAAAAATTTGCTTCTTCTCCTTTAGCTTGTGCTTAGGTTTTAAAGGTAGTAACTTCTATTTATGATCTTGAAGTTCTTCTTATTTTTTTTTTTGCTTTCTTGCTTCCTTTCCTTTTTTTTTCCTTCTTTCCTGTAGCTCTTGTTTCCCCCTTGCGAAATGCTGTTGGAAAGCTTCCTCTTAAAACCAGTGCTGCTGGCTTTTGTCTCTATTGCCAACCGCTCCTCTTCTTTTTTTCTCCTTTTTTAATAGCCGACGGGTCAAGGATAATGGGCTGGCTATTTTAGTTACTCGCTTATTTTAAATGTGCCAAGTCCAATTCTTTAAGTCATTACACACGTTGTGGGTCAGTGGTTATTTGGTCTCTTTTTTATGGTCCTATCCATTCATCTCGACATGAGCTAGTTTTTGGGGTTGAGTTATGCCGTGGTCCAATTCTTTGTCATGGTACCATAGTCAAGTCCATCCCAATTCATGTTTACCTGATGTTGGGCCTCCCATCTTATATTTTCTTCGCTCCAAAGGTTCAACCTTGAGCGCGTGCGACCGGGGTGGGTGGGTAGGGGGTTGGGGTTAAGGTTACCTAGTCTTTATATGATGTGGGCAATTCTTCCCTCATGAGCTAGCTTTAGGATTGAGTTAGACCCAAGGTTGTTTTTTATTTCAGAAGGTGAACAAGAAGATCGAAGGCGTCGGATGATGCTCCATTAGCCTTTATGTGGGTTATATTGAAAGAGAAAAAATAGGATAACATTTGAAGGGGTTGACAATGACTCTGTTAAATTAAAAAAGTAGCCTCTTGTGTATGATATCTCTTTGGTGTACCTATGAGGTTCCTATTTGTGTAGAAGACCGGATATCTTCTGTTGAGAACCATACATTTGTTTAGGTTTCTATACTTTTTGATATTTGACTTGTATTACCGATTTCCCATCATTGATAGTATTGCTTATTAAATTAATGAAAAAGGAGAAATGGTAAATGAAATTGCCTTATTGAATATATGACAGCTGTTTGAATAGTGCTAATTATGTCGTACACATTTTGATTGAACAGCCTCATTAGCTGCAAAGGCACAATATCTTATGCTAATGCCTTCCTTTTCCTCTTCATTCTTATTTGCTGTCCGTTGGTACCTCTGTTCTTCTCTTACCTCTTATTTGTGCATTCATTCATCTGTATATTATATGTTATTTGGCAGTTGATCCTCTTCTAAAATTTACCAAAAATTGATTAGCCTAGTTCTCTTGACATGGCTCATTGTAGATTATAGTGAATCCTCATATTTATGTCTGAATATATTTTCCCAACTGCCAATGTGGTTAGCAGAGAGCGATAGGATGGGGTTGGAAGGCATCTGATATGCAAAATATATGATTATATAAGTATTATGTTTGAGGTCAGGGTCAACTATACATTTGGTGCATAATTTAGAACAAGGACCAGCTCAAAATTGTTTTCTTCTTGTTTCCATTTAACTTCTTAATTTTTCTTATAACTCTCCTTGGCAGACTAGCAACAAAGAGGATGCAACTGATAATCAGAAAAGAAAGGAGATTGAGGATAAATTACAAGTTCTGAATATGAAAAAGCATGGTTTGGTACAATTACTAAAACAGGTGATCTTAATGTAAAACAATCTGAGGAGGAATTGAAACTTTTACATGATGTCTCATTTTTTATTTGTTCTTATCTGTCAAATTATGTATTACTTAGCATGATCATTTTTTGTTTACAAGTATTGGCTTTTGGCAGATTTTGAATGCAGAAGAGGAGCTGAAGAGACGAAGCATGCAAGGAATGGCAGTGCGGCCATCACCCCCACTTCAAGTGGATACAACAAACGACACTGGATCTATAACTAAACTAAACACACCTAGAATGGGCTTGGATGGTAACCCCATCGGTGAGGTGGATGGAGATGGAGGTGATGATGCATCCAACCAGAACACACTTCCTCGGAATTTGCTTCGTTTGAGCAGTACATCACCATCTTCAGATTCTCAACTGAGGAAGACCCCCTATAATGTGGTAAGTGCCCTATCTATGCGTGCATTGTTACCTTTGGCTTTCATTTGTGGCGCTACACCACCAGGAGTGGAAAAAGAGGGCTTTAATTTTTGTTTCTAATATAATTAATCTAGCAAAGATTTAAAAAGTTTTAAGTAAAGCAACAACATTCAATATGTGCAAGACTGCAAGTTAGTTCATCATATTATTGCTGGTTCACTCCCTTGAACCAAGTCTTCTATTTATCTTCTTCCTCAATGGAGCAGATCTTAATTTTTCTTTCATAGAACCATGTCCAAGGCATCTCGAAATGTGTGCTCTTGGTAACATTTGCTGAAAATTAAGGACCCCATATTGAACTTCTATTGGACATGAGATTTTGTTACAATTGTGTCTCTGTAACTAGTTTTGAGCTGTTCCAATCATTTTCTGCCACTTGTTGGACTAATTGGACCTTGCAATAAATTATGTTGCTACTTTGCACATGCCATAATAAGGGTTAGTGCTTTGACTAAGGGAAGATGATATATGTATATATATATATATGTATATATATATATATTATCTTGTTGTTGCATCAATGGAGAAGTTTATGTGCTATTTTACCTTGTTAATACTAGTTGTAAGAGCAAAAATTACTTTGTGGCCATTTTCTTCAGTGCAAACTGGGAATCAACATGTGGGATGAGGGATTATTGGAGTTATATATCAGCCTTCAACCACTTCCCCTTGATGTGAAATTTTCAGTCCCCTTTCTTTGTGAATAATGGAGTTCCAGAGAATGTACGATGTTCGGAGACTTGAACCAAGAGGTGCATCCTTAGATTACGTTAGGGCAATTAAATACATGTACTATGGAGCAAGGAAACTCAGATCACTTCTCGTTGTGATGGGGTTGCACCAGGGATCGACACATAGCCCATTTCTAGTTACTAACACGACTTATCCTAGGAAAAGTCCATGATATATGCTCTTTGCAGATGACAATGTGGTAATGAGACCAGGACAGAGTTAACAATAGGTGCCTTAACAATATATTGGAAATTTGAGGACAGACGTTGGAGTATAAAGAGTCTGGGTTGAGTAGGACTTAGACAAAATACTTGAAGTTCAAGTTCAATGACGTAAAACACATGGTAGATGTGGAAGTAAGGATTGAAACAAGCAGGGATCAATGATTCAGGAAAATAAGGAGATAGACGAAGATGTTACACATTGTATTGGAGCAGGTGGATGACGTTCACTGTCTTTTATGATAAGATTGTACCACCAAAGCCTTAAGGTAGGTATTACAAAGTGGTGGTCAGACTAGCTATGGACAGAGTGTTGACTAGACAAGAACTCGCATGTATAGAAGATGAGAGTAGTAGAAATGAGAATGTTGAGTTGGATGTTTGGGCATACTAAGATTGAGATTAGGAATGAAGCTATACGCGACATTGTGGGATAGGGCGCCTTGGTGAACAAGATGAGGCATGTGAAGCTGAGATGGTTCGAACATGTGAAGGAAACATGCATGAATACCCCGATTAGGAGCGAGAGGTTGGCTATAGAGGATGTAACATGATGTAGAGGTAGACCGAGAAGTCTCAAAAGAAATGATTAGATAGGACATGACTCATGCAGCTTACCTTTATGAGGACATGACCTTGGCCCTAGATAGGAAGATATGGCGGTCAAAAATTAGGGTAGAAGGTCAGTAGGTCGAACATTGTCTTGTTCTCTCTTACTGTCTTATTCGATTTTAGTATTACATGATTTTTCATTTGCTAACAGCTACCGTTATTTTAAATTTTTTGGTGTTGCTATTGCTCTCTTTATTGATTTCAGCATGACTTTGATTTTAGGATTACATTATTGTATTTGCTTTGCATACTTGTTTTTTATATGCTTTACCTGTGTCGTTTATCTGGTAGATACAACCTCTCTACCTTTCAAAAGGTAGGGGTAAGGCCGTGTACACACCATCCTCCTCAGACCCCACTTGTGGGATTATAACTGGCCCAGTTGAGCTGGGTATGTTTTTATTGGATCTCCAGATGAAGACCAGACAATACTTTTCTTGACAAATTGCTTTACGTGGAAGGCTGCTGATACTGCATTAGTTGCTTACATTTGGTTTTCACTAGACATCTTTTTCATATTATACATAAATATGCAGGCTACACTAGAAACTACTATATAGAATTGGATAATCCGTAGTGAATAAATTTATCTTGGGTCTGTTTTGTTTTCTCACTCCATGTAGCATGGGCACTTTATTAGATACATATTCAAGTATAGTTTAAGGCTCCACCTGCAAGGACTTTTTTAACTTTAACTTCTTCCAATTTTTGCAAAGTGGACTATTTGTTAAATCAAAAGTAGATATATATTAGCAGCTTCAAAAAAAAAAAGTAGATGTATATTAGAATCTAGCTATTAGTAGTCCTTTGTAATTATAATGATGAACAACAATATATTTTCCTAATCATATGTTAGTCGACTTACTAGTTAATTAACTAAATAGTTCTTATTGTATCCTCAGGCTACGTTCCTTTGAGGTCTACTTTGATATATAGGGTGAAATGGTAGGGCAAAGTGACAAGACACTGAAGAAAACAGCTATAAGAAGAAAAGATATGAAAGCAGATGAAGAATTAGTTCTCATAAACCAGTTAAAAAAAAGTCATGAGATTACCATTAAGTAGCTTATCTAGTAAAATTTGAGTCAGGGAGCAGGGAGCTGAACTATACACCACAGATAAAAATCAGTTCATAAAAAATTCAGCCAATTGGTTTATGAGAAAACTAATTCTTAAATAGTATGTAATAAATTTCACTAGTTCAAGAAATCCATTCTCACTTGCTGTCTATTTTTTCAGGTTCCTCTCGCTTCACGATCTGTTGGAGTTACTGTTAGTCCTTCACGGTTTGCACCTCCGGGACAGCAAGGGCAACCTTCAAGTCTCCCCCCAGTGTCCTTATCTGGAACGAACATTGTTGCCTCCTCTCCTTCTCCTGTAGCATCAGGCGGCACTTCAGCATTTCGAGATCGGTTTGCAAGCCCATGAAAATGGGAGTTGTGCTAGTTGTTACTCCTCCTGTCAGCTGGCTTTCTGTTCTCTCAACCTCATTCTAAGTTTCAACTGGCTAATCTATGAAGCTGTAAATTATTCTGTAGTTCCAAATTGGTCATTCGCTGTAACGGTAGCAGTGACGATGCAGTGTCTTTAAGTCTGGTGCCTTCTAGTTGGAAGTATAGTATTTCCGTTAATCTGGCTGGGTGTGTGTCCATCCGATACTTGTGAAGTTTCCCATGGTCATGTTTTTAGTTCTTAAAAGATGTTAGAACTGAATATCCTATGTACATATATTATGCCATTTTGCTTTTAAGTCGTTAAGTTGTATT</genome_strand>
        <mrna_strand>AATTGAAAGGGCAAATTGGGCGAAAATGGTGGCACTATCACTGTACAAGGGAAATCTCCACAGAGTACCTGAAACTCCACGGCGATGGCTAGTGCCAACCCCCAAAATCTCTCATAAGGACTTCCAATGTCTCCTCCGTCGCCGGTCCCGAGCCCTCTCTCGCCTCCAAAATCCTCCCGATGTCTCTCCTACCACCGCCACCGCTTCAAACCCTAACCCTAACCTCAAAACTGATACCAAATCCAAACCTGAGGATGAGGTTCCTGTTTCGATTCCAGTGAAGATCGAGAAGGAGGAAGAGGATGTTCGAGTGGAGAATGTGAAAGAGCCGGAGAAATTGGTTGATTCATCTGCTGTCGTGGTTGAACCTAAGCTTGAGGTTTTGGAAAACGATCAGAAATTGGAGGGTCAGGTGAATCCCTCTGGTGTGGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTAGCAACAAAGAGGATGCAACTGATAATCAGAAAAGAAAGGAGATTGAGGATAAATTACAAGTTCTGAATATGAAAAAGCATGGTTTGGTACAATTACTAAAACAG........................................................................................................................................ATTTTGAATGCAGAAGAGGAGCTGAAGAGACGAAGCATGCAAGGAATGGCAGTGCGGCCATCACCCCCACTTCAAGTGGATACAACAAACGACACTGGATCTATAACTAAACTAAACACACCTAGAATGGGCTTGGATGGTAACCCCATCGGTGAGGTGGATGGAGATGGAGGTGATGATGCATCCAACCAGAACACACTTCCTCGGAATTTGCTTCGTTTGAGCAGTACATCACCATCTTCAGATTCTCAACTGAGGAAGACCCCCTATAATGTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCTCTCGCTTCACGATCTGTTGGAGTTACTGTTAGTCCTTCACGGTTTGCACCTCCGGGACAGCAAGGGCAACCTTCAAGTCTCCCCCCAGTGTCCTTATCTGGAACGAACATTGTTGCCTCCTCTCCTTCTCCTGTAGCATCAGGCGGCACTTCAGCATTTCGAGATCGGTTTGCAAGCCCATGAAAATGGGAGTTGTGCTAGTTGTTACTCCTCCTGTCAGCTGGCTTTCTGTTCTCTCAACCTCATTCTAAGTTTCAACTGGCTAATCTATGAAGCTGTAAATTATTCTGTAGTTCCAAATTGGTCATTCGCTGTAACGGTAGCAGTGACGATGCAGTGTCTTTAAGTCTGGTGCCTTCTAGTTGGAAGTATAGTATTTCCGTTAATCTGGCTGGGTGTGTGTCCATCCGATACTTGTGAAGTTTCCCATGGTCATGTTTTTAGTTCTTAAAAGATGTTAGAACTGAATATCCTATGTACATATATTATGCCATTTTGCTTTTAAGTCGTTTAGTTGTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0002C17-0oP1n/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U315591" ref_strand="+" ref_description="SGN-U315591        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr3:17665064-17666984 REVERSE | Aliases: T23J7.180(evalue: 2e-17, score=86.3) genbank/nr: gi|15228266|ref|NP_190369.1| expressed protein [Arabidopsis thaliana] gi|7487369|pir||T07724 hypothetical protein T23J7.180 - Arabidopsis thaliana gi|4741202|emb|CAB41868.1| putative protein [Arabidopsis thaliana] gi|16226347|gb|AAL16142.1| AT3g47850/T23J7_180 [Arabidopsis thaliana] gi|21436041|gb|AAM51598.1| AT3g47850/T23J7_180 [Arabidopsis thaliana](evalue: 1e-15, score=86.3)">
      <seq>gtgccaacccccaaaatctgtcataaggacttccaatgtctcctacgacgccggtcccgagccctctctcgcctccaaaatcctgccgatgtctctcctaccaccgccaccgcttcaaaccctaaccctaacctcaaaactgataccaaatccaaacctgaggatgaggttcctgtttcgattccagtgaagatcgagaaggaggaagaggatgttcgagtggagaatgtgaaagagccggagaaattggttgattcatctgctgtcgtggttgaacctaagcttgaggttttggaaaacgatcagaaattggaggttcagactagcaacaaagaggatggaactgataatcagaaaagaaaggagattgaggataaattacaagttctgaatatgaaaaagcatggtttggtacaattactaaaacagattttgaatgcagaagaggagctgaagagacgaagcatgcaaggaatggcagtgcgcccatcacccccacttcaagtggatactacaaacgacaccggatctataactaaactaaacacacctagaatgggcttggatggtaaccccatcggtgaggtggatggagatggaggtgatgatgcatccaaccagaacacacttcctcggaatttgcttcgtttgagcagtacatcaccatcttcagattctcaactga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0002C17-0oP1n/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0002C17.2" temp_strand="+" temp_description="C06HBa0002C17.2  AC211019.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0002C17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="94454" stop="101336"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94754" g_stop="95074" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="321" r_length="321" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95075" i_stop="100536" i_length="5462">
            <donor d_prob="0.391" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100537" g_stop="100644" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="429" r_length="108" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="100645" i_stop="100780" i_length="136">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="100781" g_stop="101036" g_length="256"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="685" r_length="256" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0002C17.2" gen_strand="+" ref_id="SGN-U315591" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>685</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0002C17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U315591" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94754" e_stop="95074"/>
          <exon e_start="100537" e_stop="100644"/>
          <exon e_start="100781" e_stop="101036"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGCCAACCCCCAAAATCTCTCATAAGGACTTCCAATGTCTCCTCCGTCGCCGGTCCCGAGCCCTCTCTCGCCTCCAAAATCCTCCCGATGTCTCTCCTACCACCGCCACCGCTTCAAACCCTAACCCTAACCTCAAAACTGATACCAAATCCAAACCTGAGGATGAGGTTCCTGTTTCGATTCCAGTGAAGATCGAGAAGGAGGAAGAGGATGTTCGAGTGGAGAATGTGAAAGAGCCGGAGAAATTGGTTGATTCATCTGCTGTCGTGGTTGAACCTAAGCTTGAGGTTTTGGAAAACGATCAGAAATTGGAGGGTCAGGTGAATCCCTCTGGTGTGGAGGTATTGAATTGCAATTATTGATCTATTTTGTTTGTATGGTGTTATCCATGGATTTTGCTGGCTTTAGTTATGATTCGCTTATGCATCTTTCTGTTTTCTCTTAGTAAGGAAGGGATCCCAGCCAATTCAGGGTAGAAGTTAAGGGTGTGTATACCTTACGAAGCTTTTTACCCTTTTTGCGATGAGGCTGCTCCAAGTCTGGACTCTCCAACCATGACCTACAGCTTTTCCTCATTTTTGTTTATTATGTTTAGGAATTCTTAATATATGTCAATAAAAAAATATGTATCAGATGATTTGTAAGAACTAATACTGTTTATTTCTATGGAAGAGCGTAATGATATATGTGTAGTTGGTTTAAGACTAGCATTTTTTTAGCAGAAGCGTCATGTACTGATTAGAGATGAGGAGGTATATTTGCCTGAGGGTTGGGATACTTACATTAGATCTGTTCGGGGGATACTGCTTTCAGAAATTAAGGATAAATGGAGAGACAGTGAATGCTACATGCTACATTGGATTTATGGAGATAGGGAGAAGAGTCGTTCTTTCCGTATAGGGTGCCCATGAAGGTGTGTTTCCTTGCTTGATTAGGGGCGGGTGAAGTGATATTGATGGCTGAGAACATGAGATAGAAAAGGAGCACCTATGTTGGTGTTACATCTACAGATGTTTGGGTGAATACGTAGACCTGTCTCCTGTTACATTTTCAGGTGGTTGTGCACTCATTGTTGGCAATTCTGAATCGTTTGGTGGATACATGAGTATTTGTCAGAGTTTCTCTATATCGGAAGCAATCTGTAATTCCAGACTTTTCACCTACTCGTTTAACCGGAACCCAACATACTAAATTTAAGAGAATATCAAATATGAAGTCGGTCGCTTTCACAAAACTTTAGACGTTCCCAGTTACTTCTTTACTGACACAAGCCAAAACCAAATTTACAAGACCGACACAAGGAGGAAAACTCTAGGATTTAAGCAAAATAATATACTATATTAGTCTAAATAGAATGATGTCCCATGCGAGGTAAGTGCGGAGCTTGTTAGCTCTGTGACTCTGTATGAGTCAAAGTGTCACCCTTAAATGAATTATCTTTGGGGGGGGGGGAGGAGTTGGATTCAGTTGCACTAATTGCGTGAGTAATAACATCAACCATACATTTTATATGGAGCAGGTATACATAAGGAATCATGCAATTTATAAGATCCTCAACTATGTCCTACTTAAATCAATATAGCCTAAGTTGCTCGGGTGTGGTTTCCGATAATGCGGACCTAGAGCTCAAATCCTATATGATCTAAATTTTTAGATTTGGGTATATGGATCCATGTATGGATATGGGAGCGGGGGTTCGGCTAAAAATAATTCAAATAGCTAAAAATAGAGTTATAAAGCCTAAGTTATGAGATATTATATGGACGTCTTGAGATGAAAATGTTGATCAAGAGGAGAAAGAGATAAAAGGAAAAAGAGTGACAATAGAAATTAATATATCCAAGGTATTTCATTTCTTCAATTTCACCTTAATTTTTGTTTTGCGCATATAAATCATTGAATCTGTCCAAATTTCTCCCTCAAATTTGGTTTAAGTATCCCAAATTGGTTGACCATATCGTTTACGGATGCCACACCATCACTCACACCCGTTTCGTGTCGACATGGGTGCGAGAACAAAGGCGAAGAGTCCGTGCAACTTAGGATATAACCATTGTTGTGAAAAGCGCAGAAAAAGCGCGCTTCAAAGCGACACGACCCTTGTGCGCTTTTTTATCTTGAGGCGAGGCGATCTGAAGAAAACTCTCGCTTCAGATGAAGAAGCGACCCTAAGGCAAAAGCGCAATAAAGCGCGCTTTTTATAAAAAAAAAGCGACAATTAGTTTTTTTTTAATAAAAAAATTAGGTTTTTTTTTATAAAAAAATCTGAAATATAACCTTCTCTCTCCTCACGACTCTTTTCCTTCTTTCTCTTCTCGCAACTCTTCTTTCACAACACTTCTTTCCCTTCTTTCTCTCCTCGCAGCTCTTCTTTCACAATACTTCTTTCCCTTCTTTCTCTCCTGACGATCTCGACTGAGTCTGCCTCTTTCTTCAACCTCGACTGTAGGTAACTTTTTGTTCATCTCTTTTTTAGCTAATGTTTATTAGTTCATCTCTATGAGTTTCTTTTCTCCTGAAATATCAATCTTTGCCTGTGCTTCATCTCTTCATCTCTCTGAGTTTCAACTACTCTAGTTTTTTCTTCTTCTTCTCTTCTTTTCTTCATCTCTGCTGCTTGCTCTGTTTCTAATTACTGACTGCTGCCTCCTCTGTTTTTTTTTTCTTCAATTCTTTTGCTTTTTTTTATTTTTTTATTTTGTGATCAGTCTAGCAGCCTTGTTGAAGAATAGGAGTTTGAATCTTTGTGACTTAATTATATTTTTGATTTTTTGCTTTATATGTTATGACTTATGAGTATTTTTGCCTATGTAATTTCTTTCAATCTAAGACTATATTACCTCTATTTAGTTATTTAATATTTTTTATTTTTATACTAAATGTCGCTTTTTTTTTCTAAAAAAAAGCGCGCTTCGCTTCTGTGAAGCAAGCCTTCGTAGCTTTTTTCCGCTTCTCGCTTCCCAAAACACGGATATAACAATTCGTGTGTGAAATAAATGATCAAAATGGATGAAAATATACATTTTAGATCCATTTATCCTTTTCTACTTAATATCCTTATATAGTGGGAGATACATTAACCAAAATCGATGTAAATTTGGACACCACAAGTCTATCATGGCTTTCTGACTATCCCATCAGCTAGGTTCCCTTCTAGAGGGCTCAAGTGTGATATTCATATTACTGGTTCTTTCCTGCTAGTATAGGAAAATATTATACAAGGTGCGACCATGTCTAGTGACCTCAACGTTAGATGATAGTGATCTAGCAAAGCTTACTCCTGAAGTATCTTCCTTACAACAACAACATACCCAGTATGATCCCACATAGTTAGGGTCTAGGGAAGGTAGAGTTTACACAGAACTTAACCCTACCTCAGAGGTATTGAAGTATCTTCCATATAAGACAAAATGTTGTCATATTTTTTTGTGTTAAGAATTTATTCCAATAGTATATATAGCAACTAGGTTTAAGGATAATCAATATGTCAAAGTCATTATAAAGATGATTTTGTACATTTCCAATTGTGGACCATACTTTCACTTGTTCGTGTGCAGGTAATCGATTTGTTTTTTATAAATCGTTTCAATGCAAGAATACAAACTCAAAATTATGCTATAATTGAAATTCAACTATGAAAGAATTATAACTCATAGTACTATTGCTGAAAACTCCAATTTGATAATTGCGTCGTCAAAGTATCAAATATCTTATAATAGGTCATAACTTTGTATCTTAATCATTCATAGAACTTGTGAAATTCCATGTTTTTAGCAATAAGATCTCAATTTCCCAATTCGACTCTAACATTAACTCTTAACATTAAGTCGATGTGGGTTTATTAGTTTGGCTGTATTCTCCATTCTAAAAAAAGTTTATCAGGAATCCTAAATAGCAAATGATGAAACTGCTAGTTCAAGAATAAAGACAAAACTTGTGTTTATATCATGTTACTCCGAGCCAACTTTAAATAAAGTGTTGTCTTAGCAGTTAGCACCGTTTCGGGAAAAATATATTTTCGATCATCAAGTTTGAAACCTAAATCAACTTCTTCCCCAAATTGAAAGCTTCTTTAAAATTCCAGATTATTGCCTCCTCAAATCTCCATTTATGAACAAGGTATTTTAACTTTTGATATAATGTTGAATCTAGTGCTGAATACCTCATTAATTTAAGGTCGCTTCACTCCTATTTCCTACTGTTTTATACCCTAAAGAAGAATTTAGTTAGTTGAATATGGTTTTAAAGAGTGACCTGAATTGTGATTACAGCAAAAAAATTTGCTTCTTCTCCTTTAGCTTGTGCTTAGGTTTTAAAGGTAGTAACTTCTATTTATGATCTTGAAGTTCTTCTTATTTTTTTTTTTGCTTTCTTGCTTCCTTTCCTTTTTTTTTCCTTCTTTCCTGTAGCTCTTGTTTCCCCCTTGCGAAATGCTGTTGGAAAGCTTCCTCTTAAAACCAGTGCTGCTGGCTTTTGTCTCTATTGCCAACCGCTCCTCTTCTTTTTTTCTCCTTTTTTAATAGCCGACGGGTCAAGGATAATGGGCTGGCTATTTTAGTTACTCGCTTATTTTAAATGTGCCAAGTCCAATTCTTTAAGTCATTACACACGTTGTGGGTCAGTGGTTATTTGGTCTCTTTTTTATGGTCCTATCCATTCATCTCGACATGAGCTAGTTTTTGGGGTTGAGTTATGCCGTGGTCCAATTCTTTGTCATGGTACCATAGTCAAGTCCATCCCAATTCATGTTTACCTGATGTTGGGCCTCCCATCTTATATTTTCTTCGCTCCAAAGGTTCAACCTTGAGCGCGTGCGACCGGGGTGGGTGGGTAGGGGGTTGGGGTTAAGGTTACCTAGTCTTTATATGATGTGGGCAATTCTTCCCTCATGAGCTAGCTTTAGGATTGAGTTAGACCCAAGGTTGTTTTTTATTTCAGAAGGTGAACAAGAAGATCGAAGGCGTCGGATGATGCTCCATTAGCCTTTATGTGGGTTATATTGAAAGAGAAAAAATAGGATAACATTTGAAGGGGTTGACAATGACTCTGTTAAATTAAAAAAGTAGCCTCTTGTGTATGATATCTCTTTGGTGTACCTATGAGGTTCCTATTTGTGTAGAAGACCGGATATCTTCTGTTGAGAACCATACATTTGTTTAGGTTTCTATACTTTTTGATATTTGACTTGTATTACCGATTTCCCATCATTGATAGTATTGCTTATTAAATTAATGAAAAAGGAGAAATGGTAAATGAAATTGCCTTATTGAATATATGACAGCTGTTTGAATAGTGCTAATTATGTCGTACACATTTTGATTGAACAGCCTCATTAGCTGCAAAGGCACAATATCTTATGCTAATGCCTTCCTTTTCCTCTTCATTCTTATTTGCTGTCCGTTGGTACCTCTGTTCTTCTCTTACCTCTTATTTGTGCATTCATTCATCTGTATATTATATGTTATTTGGCAGTTGATCCTCTTCTAAAATTTACCAAAAATTGATTAGCCTAGTTCTCTTGACATGGCTCATTGTAGATTATAGTGAATCCTCATATTTATGTCTGAATATATTTTCCCAACTGCCAATGTGGTTAGCAGAGAGCGATAGGATGGGGTTGGAAGGCATCTGATATGCAAAATATATGATTATATAAGTATTATGTTTGAGGTCAGGGTCAACTATACATTTGGTGCATAATTTAGAACAAGGACCAGCTCAAAATTGTTTTCTTCTTGTTTCCATTTAACTTCTTAATTTTTCTTATAACTCTCCTTGGCAGACTAGCAACAAAGAGGATGCAACTGATAATCAGAAAAGAAAGGAGATTGAGGATAAATTACAAGTTCTGAATATGAAAAAGCATGGTTTGGTACAATTACTAAAACAGGTGATCTTAATGTAAAACAATCTGAGGAGGAATTGAAACTTTTACATGATGTCTCATTTTTTATTTGTTCTTATCTGTCAAATTATGTATTACTTAGCATGATCATTTTTTGTTTACAAGTATTGGCTTTTGGCAGATTTTGAATGCAGAAGAGGAGCTGAAGAGACGAAGCATGCAAGGAATGGCAGTGCGGCCATCACCCCCACTTCAAGTGGATACAACAAACGACACTGGATCTATAACTAAACTAAACACACCTAGAATGGGCTTGGATGGTAACCCCATCGGTGAGGTGGATGGAGATGGAGGTGATGATGCATCCAACCAGAACACACTTCCTCGGAATTTGCTTCGTTTGAGCAGTACATCACCATCTTCAGATTCTCAACTGA</genome_strand>
        <mrna_strand>GTGCCAACCCCCAAAATCTGTCATAAGGACTTCCAATGTCTCCTACGACGCCGGTCCCGAGCCCTCTCTCGCCTCCAAAATCCTGCCGATGTCTCTCCTACCACCGCCACCGCTTCAAACCCTAACCCTAACCTCAAAACTGATACCAAATCCAAACCTGAGGATGAGGTTCCTGTTTCGATTCCAGTGAAGATCGAGAAGGAGGAAGAGGATGTTCGAGTGGAGAATGTGAAAGAGCCGGAGAAATTGGTTGATTCATCTGCTGTCGTGGTTGAACCTAAGCTTGAGGTTTTGGAAAACGATCAGAAATTGGAGGTTCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTAGCAACAAAGAGGATGGAACTGATAATCAGAAAAGAAAGGAGATTGAGGATAAATTACAAGTTCTGAATATGAAAAAGCATGGTTTGGTACAATTACTAAAACAG........................................................................................................................................ATTTTGAATGCAGAAGAGGAGCTGAAGAGACGAAGCATGCAAGGAATGGCAGTGCGCCCATCACCCCCACTTCAAGTGGATACTACAAACGACACCGGATCTATAACTAAACTAAACACACCTAGAATGGGCTTGGATGGTAACCCCATCGGTGAGGTGGATGGAGATGGAGGTGATGATGCATCCAACCAGAACACACTTCCTCGGAATTTGCTTCGTTTGAGCAGTACATCACCATCTTCAGATTCTCAACTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0002C17-0oP1n/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335226" ref_strand="+" ref_description="SGN-U335226        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr3:17665064-17666984 REVERSE | Aliases: T23J7.180(evalue: 7e-20, score=95.1) genbank/nr: gi|21592503|gb|AAM64453.1| unknown [Arabidopsis thaliana](evalue: 5e-18, score=95.1)">
      <seq>ccaccgccaccgcttcaaaccctaaccctaacctcttaactgataccaaatccaaacctgaggatgaggttcctgtttcgattccagtgaagatcgagaaggaggaagaggatgttcgagtggagaatgtgaaagagccggagaaattggttgattcatctgctgtcgtggttgaacctaagcttgaggttttggaaaacgatcataaattggagggtcaggtgaatccctctggtgtggagactagcaacaaagaggatgcaactgataatcagaaaagaaaggagattgaggataaattacaagttctgaatatgaaaaagcatggtttggtacaattactaaaacagattttgaatgcagaagaggagctgaagagacgaagcatgcaaggaatggcagtgcggccatcacccccacttcaagtggatacaacaaacgacactggatctataactaaactaaacacacctagaatgggcttggatggtaaccccatcggtgaggtggatggagatggaggtgatgatgcatccaaccagaacacacttcctcggaatttgcttcgtttgagcagtacatcaccatcttcagcatttcgagatcggtttgcaagtccatgaaaatgggagttgtgctagttgttactcctcctgtcaactggctttctgttccctcaacctcattctaagtttcaactggctaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0002C17-0oP1n/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0002C17.2" temp_strand="+" temp_description="C06HBa0002C17.2  AC211019.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0002C17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="94554" stop="104472"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94854" g_stop="95095" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="242" r_length="242" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95096" i_stop="100536" i_length="5441">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100537" g_stop="100644" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="350" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="100645" i_stop="100780" i_length="136">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="100781" g_stop="101024" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="594" r_length="244" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="101025" i_stop="104059" i_length="3035">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="104060" g_stop="104172" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="595" r_stop="707" r_length="113" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0002C17.2" gen_strand="+" ref_id="SGN-U335226" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>707</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0002C17.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U335226" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94854" e_stop="95095"/>
          <exon e_start="100537" e_stop="100644"/>
          <exon e_start="100781" e_stop="101024"/>
          <exon e_start="104060" e_stop="104172"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCACCGCCACCGCTTCAAACCCTAACCCTAACCTCAAAACTGATACCAAATCCAAACCTGAGGATGAGGTTCCTGTTTCGATTCCAGTGAAGATCGAGAAGGAGGAAGAGGATGTTCGAGTGGAGAATGTGAAAGAGCCGGAGAAATTGGTTGATTCATCTGCTGTCGTGGTTGAACCTAAGCTTGAGGTTTTGGAAAACGATCAGAAATTGGAGGGTCAGGTGAATCCCTCTGGTGTGGAGGTATTGAATTGCAATTATTGATCTATTTTGTTTGTATGGTGTTATCCATGGATTTTGCTGGCTTTAGTTATGATTCGCTTATGCATCTTTCTGTTTTCTCTTAGTAAGGAAGGGATCCCAGCCAATTCAGGGTAGAAGTTAAGGGTGTGTATACCTTACGAAGCTTTTTACCCTTTTTGCGATGAGGCTGCTCCAAGTCTGGACTCTCCAACCATGACCTACAGCTTTTCCTCATTTTTGTTTATTATGTTTAGGAATTCTTAATATATGTCAATAAAAAAATATGTATCAGATGATTTGTAAGAACTAATACTGTTTATTTCTATGGAAGAGCGTAATGATATATGTGTAGTTGGTTTAAGACTAGCATTTTTTTAGCAGAAGCGTCATGTACTGATTAGAGATGAGGAGGTATATTTGCCTGAGGGTTGGGATACTTACATTAGATCTGTTCGGGGGATACTGCTTTCAGAAATTAAGGATAAATGGAGAGACAGTGAATGCTACATGCTACATTGGATTTATGGAGATAGGGAGAAGAGTCGTTCTTTCCGTATAGGGTGCCCATGAAGGTGTGTTTCCTTGCTTGATTAGGGGCGGGTGAAGTGATATTGATGGCTGAGAACATGAGATAGAAAAGGAGCACCTATGTTGGTGTTACATCTACAGATGTTTGGGTGAATACGTAGACCTGTCTCCTGTTACATTTTCAGGTGGTTGTGCACTCATTGTTGGCAATTCTGAATCGTTTGGTGGATACATGAGTATTTGTCAGAGTTTCTCTATATCGGAAGCAATCTGTAATTCCAGACTTTTCACCTACTCGTTTAACCGGAACCCAACATACTAAATTTAAGAGAATATCAAATATGAAGTCGGTCGCTTTCACAAAACTTTAGACGTTCCCAGTTACTTCTTTACTGACACAAGCCAAAACCAAATTTACAAGACCGACACAAGGAGGAAAACTCTAGGATTTAAGCAAAATAATATACTATATTAGTCTAAATAGAATGATGTCCCATGCGAGGTAAGTGCGGAGCTTGTTAGCTCTGTGACTCTGTATGAGTCAAAGTGTCACCCTTAAATGAATTATCTTTGGGGGGGGGGGAGGAGTTGGATTCAGTTGCACTAATTGCGTGAGTAATAACATCAACCATACATTTTATATGGAGCAGGTATACATAAGGAATCATGCAATTTATAAGATCCTCAACTATGTCCTACTTAAATCAATATAGCCTAAGTTGCTCGGGTGTGGTTTCCGATAATGCGGACCTAGAGCTCAAATCCTATATGATCTAAATTTTTAGATTTGGGTATATGGATCCATGTATGGATATGGGAGCGGGGGTTCGGCTAAAAATAATTCAAATAGCTAAAAATAGAGTTATAAAGCCTAAGTTATGAGATATTATATGGACGTCTTGAGATGAAAATGTTGATCAAGAGGAGAAAGAGATAAAAGGAAAAAGAGTGACAATAGAAATTAATATATCCAAGGTATTTCATTTCTTCAATTTCACCTTAATTTTTGTTTTGCGCATATAAATCATTGAATCTGTCCAAATTTCTCCCTCAAATTTGGTTTAAGTATCCCAAATTGGTTGACCATATCGTTTACGGATGCCACACCATCACTCACACCCGTTTCGTGTCGACATGGGTGCGAGAACAAAGGCGAAGAGTCCGTGCAACTTAGGATATAACCATTGTTGTGAAAAGCGCAGAAAAAGCGCGCTTCAAAGCGACACGACCCTTGTGCGCTTTTTTATCTTGAGGCGAGGCGATCTGAAGAAAACTCTCGCTTCAGATGAAGAAGCGACCCTAAGGCAAAAGCGCAATAAAGCGCGCTTTTTATAAAAAAAAAGCGACAATTAGTTTTTTTTTAATAAAAAAATTAGGTTTTTTTTTATAAAAAAATCTGAAATATAACCTTCTCTCTCCTCACGACTCTTTTCCTTCTTTCTCTTCTCGCAACTCTTCTTTCACAACACTTCTTTCCCTTCTTTCTCTCCTCGCAGCTCTTCTTTCACAATACTTCTTTCCCTTCTTTCTCTCCTGACGATCTCGACTGAGTCTGCCTCTTTCTTCAACCTCGACTGTAGGTAACTTTTTGTTCATCTCTTTTTTAGCTAATGTTTATTAGTTCATCTCTATGAGTTTCTTTTCTCCTGAAATATCAATCTTTGCCTGTGCTTCATCTCTTCATCTCTCTGAGTTTCAACTACTCTAGTTTTTTCTTCTTCTTCTCTTCTTTTCTTCATCTCTGCTGCTTGCTCTGTTTCTAATTACTGACTGCTGCCTCCTCTGTTTTTTTTTTCTTCAATTCTTTTGCTTTTTTTTATTTTTTTATTTTGTGATCAGTCTAGCAGCCTTGTTGAAGAATAGGAGTTTGAATCTTTGTGACTTAATTATATTTTTGATTTTTTGCTTTATATGTTATGACTTATGAGTATTTTTGCCTATGTAATTTCTTTCAATCTAAGACTATATTACCTCTATTTAGTTATTTAATATTTTTTATTTTTATACTAAATGTCGCTTTTTTTTTCTAAAAAAAAGCGCGCTTCGCTTCTGTGAAGCAAGCCTTCGTAGCTTTTTTCCGCTTCTCGCTTCCCAAAACACGGATATAACAATTCGTGTGTGAAATAAATGATCAAAATGGATGAAAATATACATTTTAGATCCATTTATCCTTTTCTACTTAATATCCTTATATAGTGGGAGATACATTAACCAAAATCGATGTAAATTTGGACACCACAAGTCTATCATGGCTTTCTGACTATCCCATCAGCTAGGTTCCCTTCTAGAGGGCTCAAGTGTGATATTCATATTACTGGTTCTTTCCTGCTAGTATAGGAAAATATTATACAAGGTGCGACCATGTCTAGTGACCTCAACGTTAGATGATAGTGATCTAGCAAAGCTTACTCCTGAAGTATCTTCCTTACAACAACAACATACCCAGTATGATCCCACATAGTTAGGGTCTAGGGAAGGTAGAGTTTACACAGAACTTAACCCTACCTCAGAGGTATTGAAGTATCTTCCATATAAGACAAAATGTTGTCATATTTTTTTGTGTTAAGAATTTATTCCAATAGTATATATAGCAACTAGGTTTAAGGATAATCAATATGTCAAAGTCATTATAAAGATGATTTTGTACATTTCCAATTGTGGACCATACTTTCACTTGTTCGTGTGCAGGTAATCGATTTGTTTTTTATAAATCGTTTCAATGCAAGAATACAAACTCAAAATTATGCTATAATTGAAATTCAACTATGAAAGAATTATAACTCATAGTACTATTGCTGAAAACTCCAATTTGATAATTGCGTCGTCAAAGTATCAAATATCTTATAATAGGTCATAACTTTGTATCTTAATCATTCATAGAACTTGTGAAATTCCATGTTTTTAGCAATAAGATCTCAATTTCCCAATTCGACTCTAACATTAACTCTTAACATTAAGTCGATGTGGGTTTATTAGTTTGGCTGTATTCTCCATTCTAAAAAAAGTTTATCAGGAATCCTAAATAGCAAATGATGAAACTGCTAGTTCAAGAATAAAGACAAAACTTGTGTTTATATCATGTTACTCCGAGCCAACTTTAAATAAAGTGTTGTCTTAGCAGTTAGCACCGTTTCGGGAAAAATATATTTTCGATCATCAAGTTTGAAACCTAAATCAACTTCTTCCCCAAATTGAAAGCTTCTTTAAAATTCCAGATTATTGCCTCCTCAAATCTCCATTTATGAACAAGGTATTTTAACTTTTGATATAATGTTGAATCTAGTGCTGAATACCTCATTAATTTAAGGTCGCTTCACTCCTATTTCCTACTGTTTTATACCCTAAAGAAGAATTTAGTTAGTTGAATATGGTTTTAAAGAGTGACCTGAATTGTGATTACAGCAAAAAAATTTGCTTCTTCTCCTTTAGCTTGTGCTTAGGTTTTAAAGGTAGTAACTTCTATTTATGATCTTGAAGTTCTTCTTATTTTTTTTTTTGCTTTCTTGCTTCCTTTCCTTTTTTTTTCCTTCTTTCCTGTAGCTCTTGTTTCCCCCTTGCGAAATGCTGTTGGAAAGCTTCCTCTTAAAACCAGTGCTGCTGGCTTTTGTCTCTATTGCCAACCGCTCCTCTTCTTTTTTTCTCCTTTTTTAATAGCCGACGGGTCAAGGATAATGGGCTGGCTATTTTAGTTACTCGCTTATTTTAAATGTGCCAAGTCCAATTCTTTAAGTCATTACACACGTTGTGGGTCAGTGGTTATTTGGTCTCTTTTTTATGGTCCTATCCATTCATCTCGACATGAGCTAGTTTTTGGGGTTGAGTTATGCCGTGGTCCAATTCTTTGTCATGGTACCATAGTCAAGTCCATCCCAATTCATGTTTACCTGATGTTGGGCCTCCCATCTTATATTTTCTTCGCTCCAAAGGTTCAACCTTGAGCGCGTGCGACCGGGGTGGGTGGGTAGGGGGTTGGGGTTAAGGTTACCTAGTCTTTATATGATGTGGGCAATTCTTCCCTCATGAGCTAGCTTTAGGATTGAGTTAGACCCAAGGTTGTTTTTTATTTCAGAAGGTGAACAAGAAGATCGAAGGCGTCGGATGATGCTCCATTAGCCTTTATGTGGGTTATATTGAAAGAGAAAAAATAGGATAACATTTGAAGGGGTTGACAATGACTCTGTTAAATTAAAAAAGTAGCCTCTTGTGTATGATATCTCTTTGGTGTACCTATGAGGTTCCTATTTGTGTAGAAGACCGGATATCTTCTGTTGAGAACCATACATTTGTTTAGGTTTCTATACTTTTTGATATTTGACTTGTATTACCGATTTCCCATCATTGATAGTATTGCTTATTAAATTAATGAAAAAGGAGAAATGGTAAATGAAATTGCCTTATTGAATATATGACAGCTGTTTGAATAGTGCTAATTATGTCGTACACATTTTGATTGAACAGCCTCATTAGCTGCAAAGGCACAATATCTTATGCTAATGCCTTCCTTTTCCTCTTCATTCTTATTTGCTGTCCGTTGGTACCTCTGTTCTTCTCTTACCTCTTATTTGTGCATTCATTCATCTGTATATTATATGTTATTTGGCAGTTGATCCTCTTCTAAAATTTACCAAAAATTGATTAGCCTAGTTCTCTTGACATGGCTCATTGTAGATTATAGTGAATCCTCATATTTATGTCTGAATATATTTTCCCAACTGCCAATGTGGTTAGCAGAGAGCGATAGGATGGGGTTGGAAGGCATCTGATATGCAAAATATATGATTATATAAGTATTATGTTTGAGGTCAGGGTCAACTATACATTTGGTGCATAATTTAGAACAAGGACCAGCTCAAAATTGTTTTCTTCTTGTTTCCATTTAACTTCTTAATTTTTCTTATAACTCTCCTTGGCAGACTAGCAACAAAGAGGATGCAACTGATAATCAGAAAAGAAAGGAGATTGAGGATAAATTACAAGTTCTGAATATGAAAAAGCATGGTTTGGTACAATTACTAAAACAGGTGATCTTAATGTAAAACAATCTGAGGAGGAATTGAAACTTTTACATGATGTCTCATTTTTTATTTGTTCTTATCTGTCAAATTATGTATTACTTAGCATGATCATTTTTTGTTTACAAGTATTGGCTTTTGGCAGATTTTGAATGCAGAAGAGGAGCTGAAGAGACGAAGCATGCAAGGAATGGCAGTGCGGCCATCACCCCCACTTCAAGTGGATACAACAAACGACACTGGATCTATAACTAAACTAAACACACCTAGAATGGGCTTGGATGGTAACCCCATCGGTGAGGTGGATGGAGATGGAGGTGATGATGCATCCAACCAGAACACACTTCCTCGGAATTTGCTTCGTTTGAGCAGTACATCACCATCTTCAGATTCTCAACTGAGGAAGACCCCCTATAATGTGGTAAGTGCCCTATCTATGCGTGCATTGTTACCTTTGGCTTTCATTTGTGGCGCTACACCACCAGGAGTGGAAAAAGAGGGCTTTAATTTTTGTTTCTAATATAATTAATCTAGCAAAGATTTAAAAAGTTTTAAGTAAAGCAACAACATTCAATATGTGCAAGACTGCAAGTTAGTTCATCATATTATTGCTGGTTCACTCCCTTGAACCAAGTCTTCTATTTATCTTCTTCCTCAATGGAGCAGATCTTAATTTTTCTTTCATAGAACCATGTCCAAGGCATCTCGAAATGTGTGCTCTTGGTAACATTTGCTGAAAATTAAGGACCCCATATTGAACTTCTATTGGACATGAGATTTTGTTACAATTGTGTCTCTGTAACTAGTTTTGAGCTGTTCCAATCATTTTCTGCCACTTGTTGGACTAATTGGACCTTGCAATAAATTATGTTGCTACTTTGCACATGCCATAATAAGGGTTAGTGCTTTGACTAAGGGAAGATGATATATGTATATATATATATATGTATATATATATATATTATCTTGTTGTTGCATCAATGGAGAAGTTTATGTGCTATTTTACCTTGTTAATACTAGTTGTAAGAGCAAAAATTACTTTGTGGCCATTTTCTTCAGTGCAAACTGGGAATCAACATGTGGGATGAGGGATTATTGGAGTTATATATCAGCCTTCAACCACTTCCCCTTGATGTGAAATTTTCAGTCCCCTTTCTTTGTGAATAATGGAGTTCCAGAGAATGTACGATGTTCGGAGACTTGAACCAAGAGGTGCATCCTTAGATTACGTTAGGGCAATTAAATACATGTACTATGGAGCAAGGAAACTCAGATCACTTCTCGTTGTGATGGGGTTGCACCAGGGATCGACACATAGCCCATTTCTAGTTACTAACACGACTTATCCTAGGAAAAGTCCATGATATATGCTCTTTGCAGATGACAATGTGGTAATGAGACCAGGACAGAGTTAACAATAGGTGCCTTAACAATATATTGGAAATTTGAGGACAGACGTTGGAGTATAAAGAGTCTGGGTTGAGTAGGACTTAGACAAAATACTTGAAGTTCAAGTTCAATGACGTAAAACACATGGTAGATGTGGAAGTAAGGATTGAAACAAGCAGGGATCAATGATTCAGGAAAATAAGGAGATAGACGAAGATGTTACACATTGTATTGGAGCAGGTGGATGACGTTCACTGTCTTTTATGATAAGATTGTACCACCAAAGCCTTAAGGTAGGTATTACAAAGTGGTGGTCAGACTAGCTATGGACAGAGTGTTGACTAGACAAGAACTCGCATGTATAGAAGATGAGAGTAGTAGAAATGAGAATGTTGAGTTGGATGTTTGGGCATACTAAGATTGAGATTAGGAATGAAGCTATACGCGACATTGTGGGATAGGGCGCCTTGGTGAACAAGATGAGGCATGTGAAGCTGAGATGGTTCGAACATGTGAAGGAAACATGCATGAATACCCCGATTAGGAGCGAGAGGTTGGCTATAGAGGATGTAACATGATGTAGAGGTAGACCGAGAAGTCTCAAAAGAAATGATTAGATAGGACATGACTCATGCAGCTTACCTTTATGAGGACATGACCTTGGCCCTAGATAGGAAGATATGGCGGTCAAAAATTAGGGTAGAAGGTCAGTAGGTCGAACATTGTCTTGTTCTCTCTTACTGTCTTATTCGATTTTAGTATTACATGATTTTTCATTTGCTAACAGCTACCGTTATTTTAAATTTTTTGGTGTTGCTATTGCTCTCTTTATTGATTTCAGCATGACTTTGATTTTAGGATTACATTATTGTATTTGCTTTGCATACTTGTTTTTTATATGCTTTACCTGTGTCGTTTATCTGGTAGATACAACCTCTCTACCTTTCAAAAGGTAGGGGTAAGGCCGTGTACACACCATCCTCCTCAGACCCCACTTGTGGGATTATAACTGGCCCAGTTGAGCTGGGTATGTTTTTATTGGATCTCCAGATGAAGACCAGACAATACTTTTCTTGACAAATTGCTTTACGTGGAAGGCTGCTGATACTGCATTAGTTGCTTACATTTGGTTTTCACTAGACATCTTTTTCATATTATACATAAATATGCAGGCTACACTAGAAACTACTATATAGAATTGGATAATCCGTAGTGAATAAATTTATCTTGGGTCTGTTTTGTTTTCTCACTCCATGTAGCATGGGCACTTTATTAGATACATATTCAAGTATAGTTTAAGGCTCCACCTGCAAGGACTTTTTTAACTTTAACTTCTTCCAATTTTTGCAAAGTGGACTATTTGTTAAATCAAAAGTAGATATATATTAGCAGCTTCAAAAAAAAAAAGTAGATGTATATTAGAATCTAGCTATTAGTAGTCCTTTGTAATTATAATGATGAACAACAATATATTTTCCTAATCATATGTTAGTCGACTTACTAGTTAATTAACTAAATAGTTCTTATTGTATCCTCAGGCTACGTTCCTTTGAGGTCTACTTTGATATATAGGGTGAAATGGTAGGGCAAAGTGACAAGACACTGAAGAAAACAGCTATAAGAAGAAAAGATATGAAAGCAGATGAAGAATTAGTTCTCATAAACCAGTTAAAAAAAAGTCATGAGATTACCATTAAGTAGCTTATCTAGTAAAATTTGAGTCAGGGAGCAGGGAGCTGAACTATACACCACAGATAAAAATCAGTTCATAAAAAATTCAGCCAATTGGTTTATGAGAAAACTAATTCTTAAATAGTATGTAATAAATTTCACTAGTTCAAGAAATCCATTCTCACTTGCTGTCTATTTTTTCAGGTTCCTCTCGCTTCACGATCTGTTGGAGTTACTGTTAGTCCTTCACGGTTTGCACCTCCGGGACAGCAAGGGCAACCTTCAAGTCTCCCCCCAGTGTCCTTATCTGGAACGAACATTGTTGCCTCCTCTCCTTCTCCTGTAGCATCAGGCGGCACTTCAGCATTTCGAGATCGGTTTGCAAGCCCATGAAAATGGGAGTTGTGCTAGTTGTTACTCCTCCTGTCAGCTGGCTTTCTGTTCTCTCAACCTCATTCTAAGTTTCAACTGGCTAAT</genome_strand>
        <mrna_strand>CCACCGCCACCGCTTCAAACCCTAACCCTAACCTCTTAACTGATACCAAATCCAAACCTGAGGATGAGGTTCCTGTTTCGATTCCAGTGAAGATCGAGAAGGAGGAAGAGGATGTTCGAGTGGAGAATGTGAAAGAGCCGGAGAAATTGGTTGATTCATCTGCTGTCGTGGTTGAACCTAAGCTTGAGGTTTTGGAAAACGATCATAAATTGGAGGGTCAGGTGAATCCCTCTGGTGTGGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTAGCAACAAAGAGGATGCAACTGATAATCAGAAAAGAAAGGAGATTGAGGATAAATTACAAGTTCTGAATATGAAAAAGCATGGTTTGGTACAATTACTAAAACAG........................................................................................................................................ATTTTGAATGCAGAAGAGGAGCTGAAGAGACGAAGCATGCAAGGAATGGCAGTGCGGCCATCACCCCCACTTCAAGTGGATACAACAAACGACACTGGATCTATAACTAAACTAAACACACCTAGAATGGGCTTGGATGGTAACCCCATCGGTGAGGTGGATGGAGATGGAGGTGATGATGCATCCAACCAGAACACACTTCCTCGGAATTTGCTTCGTTTGAGCAGTACATCACCATCTTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTTCGAGATCGGTTTGCAAGTCCATGAAAATGGGAGTTGTGCTAGTTGTTACTCCTCCTGTCAACTGGCTTTCTGTTCCCTCAACCTCATTCTAAGTTTCAACTGGCTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>11</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="28308" PGL_stop="25598"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="28308" e_stop="28306"/>
            <exon e_start="28133" e_stop="27986"/>
            <exon e_start="27858" e_stop="27725"/>
            <exon e_start="26605" e_stop="26519"/>
            <exon e_start="26441" e_stop="25598"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.974" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.966" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="28308" e_stop="28306" e_length="3"/>
          </exon>
          <intron i_serial="1" don_prob="0.974" acc_prob="0.993">
            <gDNA_intron_boundary i_start="28305" i_stop="28134" i_length="172"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="28133" e_stop="27986" e_length="148"/>
          </exon>
          <intron i_serial="2" don_prob="0.989" acc_prob="0.991">
            <gDNA_intron_boundary i_start="27985" i_stop="27859" i_length="127"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="27858" e_stop="27725" e_length="134"/>
          </exon>
          <intron i_serial="3" don_prob="0.966" acc_prob="0.997">
            <gDNA_intron_boundary i_start="27724" i_stop="26606" i_length="1119"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="26605" e_stop="26519" e_length="87"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="26518" i_stop="26442" i_length="77"/>
          </intron>
          <exon e_serial="5" e_score="0.994">
            <gDNA_exon_boundary e_start="26441" e_stop="25598" e_length="844"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28308" stop="28306"/>
              <exon start="28133" stop="27986"/>
              <exon start="27858" stop="27725"/>
              <exon start="26605" stop="26519"/>
              <exon start="26441" stop="25598"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U320872" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAG : GTTATGTGTCCAGAAAGCTCATTTGACGAGCTTCTGAATCTTGTTGAGATGAACCATCAGTTGGCTTGCGATCCTGAGGTTGGTGGATGTGAGAAACTTAACTATATTCATCACATTCTCTCTGCTCCACCACATATTTTCACAACGG : TTTTGGGTTGGCAAAATACTTGTGAGGATGTAGATGACATAAAAGCCACATTATCAGCTTTATCTACTGAAGTGGACATCGGCGTCCTTTATCGGGGTCTTGATCCGAAAAACAAACATTGCTTAACTTCTGTG : GTTTGCTACTATGGACAGCATTATCACTGTTTTGCCTACAGTCATGATCGTGGACAGTGGATCATGTATGATGACAAAACCGTAAAG : GTAATTGGTGGCTGGGATGATGTTCTCGTCATGTGTGAGAGAGGGCATTTGCAACCGCAGGTCCTTTTCTTCGAAGCTGTAAACTAGTCCAGTCAGCAAATGGTACCTCTCTAATAGTGAAAAGATGATCTGGATCAGCGTTGGTTTCTTTGAAGCTGTAATCTATTTCAGCTTAGAAAATATACCTCCCTAAGCTGCAACGAAGATATGCTACTGTGCTTTCCATTCAATCGCTAAGGGGAACAACGATATTATGCATTGTTGATCTGCAAAGTTACAAAATTGTGTAAGAAACTGTACTATACCATCAGAAAACTTGTTGACGAGATGAAGAGAAAATAGGAGTAGTTGGCCTGATAGCGAGAAAAACTTCTTCAAATTTGTGTATCATGGCGGAAGTTATCAGAGGATTGGAAAGAAAAATGTAAGTTCTGGTGCTGTTGATACTTGGTAAGCATTGGTAAAATCAAAGATTTGCGTCATCTGAAAATTTTGGAATCCTTACAATAAGGTGGCGTGGTTAAAGAAACTAGTAGTTGCCACCAGTTTCGTAGTCACAAGGAATGTGTAGATGTTTGATTTTCGAGATATTGCTTCTGTACACAGGTAATGAATCATATTATCTTTCACTTCCAATGTAAGCAAGTCTGTATAGATTGGCAATTGGTCTGTAGTCTCTTAGTGATGCAGTCAAAGTCTTCTAAACTCTATATTCATTTTGTTGTTTCTTCTCTGAGGGAAAAGAATTTTGAGTGCCCAGAAGTTATGGGAACTTTGTATTACGCTTGTCTACGATATTTAATGAAAGAGGAGACACCATATTTGCTCGTCAAGCAGAAAACCA</gDNA_template>
            <first_frame> K  :  V  M  C  P  E  S  S  F  D  E  L  L  N  L  V  E  M  N  H  Q  L  A  C  D  P  E  V  G  G  C  E  K  L  N  Y  I  H  H  I  L  S  A  P  P  H  I  F  T  T   : V  L  G  W  Q  N  T  C  E  D  V  D  D  I  K  A  T  L  S  A  L  S  T  E  V  D  I  G  V  L  Y  R  G  L  D  P  K  N  K  H  C  L  T  S  V  :  V  C  Y  Y  G  Q  H  Y  H  C  F  A  Y  S  H  D  R  G  Q  W  I  M  Y  D  D  K  T  V  K  :  V  I  G  G  W  D  D  V  L  V  M  C  E  R  G  H  L  Q  P  Q  V  L  F  F  E  A  V  N  *  S  S  Q  Q  M  V  P  L  *  *  *  K  D  D  L  D  Q  R  W  F  L  *  S  C  N  L  F  Q  L  R  K  Y  T  S  L  S  C  N  E  D  M  L  L  C  F  P  F  N  R  *  G  E  Q  R  Y  Y  A  L  L  I  C  K  V  T  K  L  C  K  K  L  Y  Y  T  I  R  K  L  V  D  E  M  K  R  K  *  E  *  L  A  *  *  R  E  K  L  L  Q  I  C  V  S  W  R  K  L  S  E  D  W  K  E  K  C  K  F  W  C  C  *  Y  L  V  S  I  G  K  I  K  D  L  R  H  L  K  I  L  E  S  L  Q  *  G  G  V  V  K  E  T  S  S  C  H  Q  F  R  S  H  K  E  C  V  D  V  *  F  S  R  Y  C  F  C  T  Q  V  M  N  H  I  I  F  H  F  Q  C  K  Q  V  C  I  D  W  Q  L  V  C  S  L  L  V  M  Q  S  K  S  S  K  L  Y  I  H  F  V  V  S  S  L  R  E  K  N  F  E  C  P  E  V  M  G  T  L  Y  Y  A  C  L  R  Y  L  M  K  E  E  T  P  Y  L  L  V  K  Q  K  T  </first_frame>
            <second_frame>  R :   L  C  V  Q  K  A  H  L  T  S  F  *  I  L  L  R  *  T  I  S  W  L  A  I  L  R  L  V  D  V  R  N  L  T  I  F  I  T  F  S  L  L  H  H  I  F  S  Q  R  :  F  W  V  G  K  I  L  V  R  M  *  M  T  *  K  P  H  Y  Q  L  Y  L  L  K  W  T  S  A  S  F  I  G  V  L  I  R  K  T  N  I  A  *  L  L  W :   F  A  T  M  D  S  I  I  T  V  L  P  T  V  M  I  V  D  S  G  S  C  M  M  T  K  P  *  R :   *  L  V  A  G  M  M  F  S  S  C  V  R  E  G  I  C  N  R  R  S  F  S  S  K  L  *  T  S  P  V  S  K  W  Y  L  S  N  S  E  K  M  I  W  I  S  V  G  F  F  E  A  V  I  Y  F  S  L  E  N  I  P  P  *  A  A  T  K  I  C  Y  C  A  F  H  S  I  A  K  G  N  N  D  I  M  H  C  *  S  A  K  L  Q  N  C  V  R  N  C  T  I  P  S  E  N  L  L  T  R  *  R  E  N  R  S  S  W  P  D  S  E  K  N  F  F  K  F  V  Y  H  G  G  S  Y  Q  R  I  G  K  K  N  V  S  S  G  A  V  D  T  W  *  A  L  V  K  S  K  I  C  V  I  *  K  F  W  N  P  Y  N  K  V  A  W  L  K  K  L  V  V  A  T  S  F  V  V  T  R  N  V  *  M  F  D  F  R  D  I  A  S  V  H  R  *  *  I  I  L  S  F  T  S  N  V  S  K  S  V  *  I  G  N  W  S  V  V  S  *  *  C  S  Q  S  L  L  N  S  I  F  I  L  L  F  L  L  *  G  K  R  I  L  S  A  Q  K  L  W  E  L  C  I  T  L  V  Y  D  I  *  *  K  R  R  H  H  I  C  S  S  S  R  K  P </second_frame>
            <third_frame>    : G  Y  V  S  R  K  L  I  *  R  A  S  E  S  C  *  D  E  P  S  V  G  L  R  S  *  G  W  W  M  *  E  T  *  L  Y  S  S  H  S  L  C  S  T  T  Y  F  H  N  G :   F  G  L  A  K  Y  L  *  G  C  R  *  H  K  S  H  I  I  S  F  I  Y  *  S  G  H  R  R  P  L  S  G  S  *  S  E  K  Q  T  L  L  N  F  C   : G  L  L  L  W  T  A  L  S  L  F  C  L  Q  S  *  S  W  T  V  D  H  V  *  *  Q  N  R  K   : G  N  W  W  L  G  *  C  S  R  H  V  *  E  R  A  F  A  T  A  G  P  F  L  R  S  C  K  L  V  Q  S  A  N  G  T  S  L  I  V  K  R  *  S  G  S  A  L  V  S  L  K  L  *  S  I  S  A  *  K  I  Y  L  P  K  L  Q  R  R  Y  A  T  V  L  S  I  Q  S  L  R  G  T  T  I  L  C  I  V  D  L  Q  S  Y  K  I  V  *  E  T  V  L  Y  H  Q  K  T  C  *  R  D  E  E  K  I  G  V  V  G  L  I  A  R  K  T  S  S  N  L  C  I  M  A  E  V  I  R  G  L  E  R  K  M  *  V  L  V  L  L  I  L  G  K  H  W  *  N  Q  R  F  A  S  S  E  N  F  G  I  L  T  I  R  W  R  G  *  R  N  *  *  L  P  P  V  S  *  S  Q  G  M  C  R  C  L  I  F  E  I  L  L  L  Y  T  G  N  E  S  Y  Y  L  S  L  P  M  *  A  S  L  Y  R  L  A  I  G  L  *  S  L  S  D  A  V  K  V  F  *  T  L  Y  S  F  C  C  F  F  S  E  G  K  E  F  *  V  P  R  S  Y  G  N  F  V  L  R  L  S  T  I  F  N  E  R  G  D  T  I  F  A  R  Q  A  E  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0002C17.2" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="28308" stop="28306"/>
                    <exon start="28133" stop="27986"/>
                    <exon start="27858" stop="27725"/>
                    <exon start="26605" stop="26519"/>
                    <exon start="26441" stop="26355"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>456</number_coding_nucleotides>
                  <number_encoded_amino_acids>152</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KVMCPESSFDELLNLVEMNHQLACDPEVGGCEKLNYIHHILSAPPHIFTTVLGWQNTCEDVDDIKATLSALSTEVDIGVLYRGLDPKNKHCLTSVVCYYGQHYHCFAYSHDRGQWIMYDDKTVKVIGGWDDVLVMCERGHLQPQVLFFEAVN*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0002C17.2" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25862" stop="25599"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>264</number_coding_nucleotides>
                  <number_encoded_amino_acids>88</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FSRYCFCTQVMNHIIFHFQCKQVCIDWQLVCSLLVMQSKSSKLYIHFVVSSLREKNFECPEVMGTLYYACLRYLMKEETPYLLVKQKT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="30462" PGL_stop="29808"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="30462" e_stop="29808"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="30462" e_stop="29808" e_length="655"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30462" stop="29808"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U344788" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAAAAATAAGTCAGGGAAAGATTGCATTAATGCTTCCTGTCTTACCATAACATCTTTCCAGAATAGTATTTTAGCTCCATTTCCTCTTCTGAGTTTGTTGTTTCCTACTAGTTTGGTCCAGAAGGATCTCCTATTGTTTCCATGTTGAAACTCTATATGGCATAGTGACCTCATTGGTACACCACTGGGAGTCCTGGCCATACTTGTGATGTCTAACTTCTCTCCAAAGAGCCTGTTCTTCTTTCACATATCTCCACAACCATTTTATCAAGAGGCACTCGTTATGGATCCTAAGATCCCTAACTCCAAGATCATCTGAGAGCTTAGGTAGCTGCACTGTTTCCCAGTTAATTAGATAGCACCCTTCCTTTTTTTGTTTCCAAACCATAGAAAGTCTCTTCTAAGCTATAAAATTAGAGCACATCCTGTATTTGAATCTTTGAAACAAAGAAATGTGTTTGAATCAATCAAATCTATTTCCAAGCTAATTTCTGTTTCTGTTAGTAACAGTGATTGGTGAGCTCAATCATCTCTTTCCATTTCTTCATTGGTTAAACTTTAAAGGAGCAAGTCATCTTGGTTCAGATAAGTGATATAGTAATTGTGGCATTACTTCGTCATACTCAAGTTGACCTGCAATCCTCTGTAGATTTTT</gDNA_template>
            <first_frame> E  K  *  V  R  E  R  L  H  *  C  F  L  S  Y  H  N  I  F  P  E  *  Y  F  S  S  I  S  S  S  E  F  V  V  S  Y  *  F  G  P  E  G  S  P  I  V  S  M  L  K  L  Y  M  A  *  *  P  H  W  Y  T  T  G  S  P  G  H  T  C  D  V  *  L  L  S  K  E  P  V  L  L  S  H  I  S  T  T  I  L  S  R  G  T  R  Y  G  S  *  D  P  *  L  Q  D  H  L  R  A  *  V  A  A  L  F  P  S  *  L  D  S  T  L  P  F  F  V  S  K  P  *  K  V  S  S  K  L  *  N  *  S  T  S  C  I  *  I  F  E  T  K  K  C  V  *  I  N  Q  I  Y  F  Q  A  N  F  C  F  C  *  *  Q  *  L  V  S  S  I  I  S  F  H  F  F  I  G  *  T  L  K  E  Q  V  I  L  V  Q  I  S  D  I  V  I  V  A  L  L  R  H  T  Q  V  D  L  Q  S  S  V  D  F  </first_frame>
            <second_frame>  K  N  K  S  G  K  D  C  I  N  A  S  C  L  T  I  T  S  F  Q  N  S  I  L  A  P  F  P  L  L  S  L  L  F  P  T  S  L  V  Q  K  D  L  L  L  F  P  C  *  N  S  I  W  H  S  D  L  I  G  T  P  L  G  V  L  A  I  L  V  M  S  N  F  S  P  K  S  L  F  F  F  H  I  S  P  Q  P  F  Y  Q  E  A  L  V  M  D  P  K  I  P  N  S  K  I  I  *  E  L  R  *  L  H  C  F  P  V  N  *  I  A  P  F  L  F  L  F  P  N  H  R  K  S  L  L  S  Y  K  I  R  A  H  P  V  F  E  S  L  K  Q  R  N  V  F  E  S  I  K  S  I  S  K  L  I  S  V  S  V  S  N  S  D  W  *  A  Q  S  S  L  S  I  S  S  L  V  K  L  *  R  S  K  S  S  W  F  R  *  V  I  *  *  L  W  H  Y  F  V  I  L  K  L  T  C  N  P  L  *  I  F </second_frame>
            <third_frame>   K  I  S  Q  G  K  I  A  L  M  L  P  V  L  P  *  H  L  S  R  I  V  F  *  L  H  F  L  F  *  V  C  C  F  L  L  V  W  S  R  R  I  S  Y  C  F  H  V  E  T  L  Y  G  I  V  T  S  L  V  H  H  W  E  S  W  P  Y  L  *  C  L  T  S  L  Q  R  A  C  S  S  F  T  Y  L  H  N  H  F  I  K  R  H  S  L  W  I  L  R  S  L  T  P  R  S  S  E  S  L  G  S  C  T  V  S  Q  L  I  R  *  H  P  S  F  F  C  F  Q  T  I  E  S  L  F  *  A  I  K  L  E  H  I  L  Y  L  N  L  *  N  K  E  M  C  L  N  Q  S  N  L  F  P  S  *  F  L  F  L  L  V  T  V  I  G  E  L  N  H  L  F  P  F  L  H  W  L  N  F  K  G  A  S  H  L  G  S  D  K  *  Y  S  N  C  G  I  T  S  S  Y  S  S  *  P  A  I  L  C  R  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06HBa0002C17.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="33817" PGL_stop="32730"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="33817" e_stop="33741"/>
            <exon e_start="33650" e_stop="33598"/>
            <exon e_start="33483" e_stop="33141"/>
            <exon e_start="32969" e_stop="32900"/>
            <exon e_start="32785" e_stop="32730"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.973" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.895" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.650" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="33817" e_stop="33741" e_length="77"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.995">
            <gDNA_intron_boundary i_start="33740" i_stop="33651" i_length="90"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="33650" e_stop="33598" e_length="53"/>
          </exon>
          <intron i_serial="2" don_prob="0.973" acc_prob="0.996">
            <gDNA_intron_boundary i_start="33597" i_stop="33484" i_length="114"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="33483" e_stop="33141" e_length="343"/>
          </exon>
          <intron i_serial="3" don_prob="0.895" acc_prob="0.995">
            <gDNA_intron_boundary i_start="33140" i_stop="32970" i_length="171"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="32969" e_stop="32900" e_length="70"/>
          </exon>
          <intron i_serial="4" don_prob="0.650" acc_prob="0.997">
            <gDNA_intron_boundary i_start="32899" i_stop="32786" i_length="114"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="32785" e_stop="32730" e_length="56"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33817" stop="33741"/>
              <exon start="33650" stop="33598"/>
              <exon start="33483" stop="33141"/>
              <exon start="32969" stop="32900"/>
              <exon start="32785" stop="32730"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U343905" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGAAGTCTAAACATGCCCATGAAAAGACAAAGGACAAGAAAAAGAAACAAGAGTATCGAAAAGCAAAAGATTCAAAG : CCTAACAGTGGTAATGAATTGCATGTGCTTCACCATGAGACTGTGGATCATGT : CTCATCTCCACTTGCTCATGATGGAGATGATCAAGAGAGTGAAATTCCTCAAACTGGTAATTCCTTAGATCTACAGGAAGAGGAGTACAAACGTATGATTGAGCTTGAAGCCGAGGAAAGGAAGCTAGAAGAAACTTTAGAGTATCAAAGAAGAATTGAGAATGAGGCTAAGCTGAAACATTTGGCTGAGCAACATAAGAGAACTGTAAGAGCAGTTCAAGAGAATATGGATGCAGTTACAAATCCTGAGTCCTACCCGTATCAAAAGTCGAGTCCTGACACTTACTTGAAGAGTTGTGATATTGATCAGAAAGTCAACGAGCAATGGAAGAGAAGTGAGAAG : AACAATGTACTATTGAACAGTGTAGAAGGTCTTTCAAAGAACTTTCCAGAAAGAATGTCACAAAGAGATG : GATTGTCAAACAAAGGAACTCCAGAGGATGGTATATTGATGTCTGATAAGCGATCT</gDNA_template>
            <first_frame> R  S  L  N  M  P  M  K  R  Q  R  T  R  K  R  N  K  S  I  E  K  Q  K  I  Q  S :   L  T  V  V  M  N  C  M  C  F  T  M  R  L  W  I  M   : S  H  L  H  L  L  M  M  E  M  I  K  R  V  K  F  L  K  L  V  I  P  *  I  Y  R  K  R  S  T  N  V  *  L  S  L  K  P  R  K  G  S  *  K  K  L  *  S  I  K  E  E  L  R  M  R  L  S  *  N  I  W  L  S  N  I  R  E  L  *  E  Q  F  K  R  I  W  M  Q  L  Q  I  L  S  P  T  R  I  K  S  R  V  L  T  L  T  *  R  V  V  I  L  I  R  K  S  T  S  N  G  R  E  V  R  R :   T  M  Y  Y  *  T  V  *  K  V  F  Q  R  T  F  Q  K  E  C  H  K  E  M  :  D  C  Q  T  K  E  L  Q  R  M  V  Y  *  C  L  I  S  D   </first_frame>
            <second_frame>  E  V  *  T  C  P  *  K  D  K  G  Q  E  K  E  T  R  V  S  K  S  K  R  F  K   : A  *  Q  W  *  *  I  A  C  A  S  P  *  D  C  G  S  C  :  L  I  S  T  C  S  *  W  R  *  S  R  E  *  N  S  S  N  W  *  F  L  R  S  T  G  R  G  V  Q  T  Y  D  *  A  *  S  R  G  K  E  A  R  R  N  F  R  V  S  K  K  N  *  E  *  G  *  A  E  T  F  G  *  A  T  *  E  N  C  K  S  S  S  R  E  Y  G  C  S  Y  K  S  *  V  L  P  V  S  K  V  E  S  *  H  L  L  E  E  L  *  Y  *  S  E  S  Q  R  A  M  E  E  K  *  E   : E  Q  C  T  I  E  Q  C  R  R  S  F  K  E  L  S  R  K  N  V  T  K  R  W :   I  V  K  Q  R  N  S  R  G  W  Y  I  D  V  *  *  A  I  </second_frame>
            <third_frame>   K  S  K  H  A  H  E  K  T  K  D  K  K  K  K  Q  E  Y  R  K  A  K  D  S  K  :  P  N  S  G  N  E  L  H  V  L  H  H  E  T  V  D  H  V :   S  S  P  L  A  H  D  G  D  D  Q  E  S  E  I  P  Q  T  G  N  S  L  D  L  Q  E  E  E  Y  K  R  M  I  E  L  E  A  E  E  R  K  L  E  E  T  L  E  Y  Q  R  R  I  E  N  E  A  K  L  K  H  L  A  E  Q  H  K  R  T  V  R  A  V  Q  E  N  M  D  A  V  T  N  P  E  S  Y  P  Y  Q  K  S  S  P  D  T  Y  L  K  S  C  D  I  D  Q  K  V  N  E  Q  W  K  R  S  E  K  :  N  N  V  L  L  N  S  V  E  G  L  S  K  N  F  P  E  R  M  S  Q  R  D   : G  L  S  N  K  G  T  P  E  D  G  I  L  M  S  D  K  R  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0002C17.2" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="33815" stop="33741"/>
                    <exon start="33650" stop="33598"/>
                    <exon start="33483" stop="33141"/>
                    <exon start="32969" stop="32900"/>
                    <exon start="32785" stop="32730"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>597</number_coding_nucleotides>
                  <number_encoded_amino_acids>199</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KSKHAHEKTKDKKKKQEYRKAKDSKPNSGNELHVLHHETVDHVSSPLAHDGDDQESEIPQTGNSLDLQEEEYKRMIELEAEERKLEETLEYQRRIENEAKLKHLAEQHKRTVRAVQENMDAVTNPESYPYQKSSPDTYLKSCDIDQKVNEQWKRSEKNNVLLNSVEGLSKNFPERMSQRDGLSNKGTPEDGILMSDKRS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="61863" PGL_stop="62458"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="61863" e_stop="62458"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.988">
            <gDNA_exon_boundary e_start="61863" e_stop="62458" e_length="596"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61863" stop="62458"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U344496" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCCATACTTTCATTTGTCTCTCTCTTTCATGCATCTGTAATTTGCAAAATCCCCTGTACCCATTACTTCTCTGCTCATAAATCACAGCTTCCTTCTTCTTTTTCTTCTTCCCCCATTCCAAACACCCTTTAAAGTTGCAACCTTTCACTTTCTTGATTTCTTCTTTTCCATTAATTAGTCCCTGCAGATCCCTGATGTAGCCCTTGTTCTTTCACAGCCTGCTCTGAGTTCAATCTCAGCTGGCTTTCTCTTGCCTAAATCACATTCTTGATTCACAAAAATAACAATAGTAAAGATGCAATCTTTGATATTTTTGCTGACCAATTGATAAAGGGGTTTCAAGAATTCTTGTTAATATGGCCTTTGCAGCTCAGCAGAAGAAGGCTATTCATTCCATGTTAGCAAACAAGCTGACCCATCTCAAAATCCCTGACTCTTCTTCATCATCATCTCCTCCTCCTACTGATCCAGACTTTGATTTTTCTGATGTTTTTGGTGCTCCTACCTCTCCTTCATCTTCTTCCAGTTTTCTAACTGACCCACAAATCATTCATAGTAGGTCCCACTCTTTTGTGGGTCCATCTCCAAGGATCACT</gDNA_template>
            <first_frame> S  I  L  S  F  V  S  L  F  H  A  S  V  I  C  K  I  P  C  T  H  Y  F  S  A  H  K  S  Q  L  P  S  S  F  S  S  S  P  I  P  N  T  L  *  S  C  N  L  S  L  S  *  F  L  L  F  H  *  L  V  P  A  D  P  *  C  S  P  C  S  F  T  A  C  S  E  F  N  L  S  W  L  S  L  A  *  I  T  F  L  I  H  K  N  N  N  S  K  D  A  I  F  D  I  F  A  D  Q  L  I  K  G  F  Q  E  F  L  L  I  W  P  L  Q  L  S  R  R  R  L  F  I  P  C  *  Q  T  S  *  P  I  S  K  S  L  T  L  L  H  H  H  L  L  L  L  L  I  Q  T  L  I  F  L  M  F  L  V  L  L  P  L  L  H  L  L  P  V  F  *  L  T  H  K  S  F  I  V  G  P  T  L  L  W  V  H  L  Q  G  S   </first_frame>
            <second_frame>  P  Y  F  H  L  S  L  S  F  M  H  L  *  F  A  K  S  P  V  P  I  T  S  L  L  I  N  H  S  F  L  L  L  F  L  L  P  P  F  Q  T  P  F  K  V  A  T  F  H  F  L  D  F  F  F  S  I  N  *  S  L  Q  I  P  D  V  A  L  V  L  S  Q  P  A  L  S  S  I  S  A  G  F  L  L  P  K  S  H  S  *  F  T  K  I  T  I  V  K  M  Q  S  L  I  F  L  L  T  N  *  *  R  G  F  K  N  S  C  *  Y  G  L  C  S  S  A  E  E  G  Y  S  F  H  V  S  K  Q  A  D  P  S  Q  N  P  *  L  F  F  I  I  I  S  S  S  Y  *  S  R  L  *  F  F  *  C  F  W  C  S  Y  L  S  F  I  F  F  Q  F  S  N  *  P  T  N  H  S  *  *  V  P  L  F  C  G  S  I  S  K  D  H  </second_frame>
            <third_frame>   H  T  F  I  C  L  S  L  S  C  I  C  N  L  Q  N  P  L  Y  P  L  L  L  C  S  *  I  T  A  S  F  F  F  F  F  F  P  H  S  K  H  P  L  K  L  Q  P  F  T  F  L  I  S  S  F  P  L  I  S  P  C  R  S  L  M  *  P  L  F  F  H  S  L  L  *  V  Q  S  Q  L  A  F  S  C  L  N  H  I  L  D  S  Q  K  *  Q  *  *  R  C  N  L  *  Y  F  C  *  P  I  D  K  G  V  S  R  I  L  V  N  M  A  F  A  A  Q  Q  K  K  A  I  H  S  M  L  A  N  K  L  T  H  L  K  I  P  D  S  S  S  S  S  S  P  P  P  T  D  P  D  F  D  F  S  D  V  F  G  A  P  T  S  P  S  S  S  S  S  F  L  T  D  P  Q  I  I  H  S  R  S  H  S  F  V  G  P  S  P  R  I  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0002C17.2" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="62183" stop="62458"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>276</number_coding_nucleotides>
                  <number_encoded_amino_acids>92</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PIDKGVSRILVNMAFAAQQKKAIHSMLANKLTHLKIPDSSSSSSPPPTDPDFDFSDVFGAPTSPSSSSSFLTDPQIIHSRSHSFVGPSPRIT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="62655" PGL_stop="64801"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="62655" e_stop="62848"/>
            <exon e_start="64361" e_stop="64443"/>
            <exon e_start="64529" e_stop="64649"/>
            <exon e_start="64791" e_stop="64801"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.992" acc_prob="0.866" e_score="1.000"/>
          <exon-intron don_prob="0.966" acc_prob="0.790" e_score="1.000"/>
          <exon-intron don_prob="0.901" acc_prob="0.975" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="62655" e_stop="62848" e_length="194"/>
          </exon>
          <intron i_serial="1" don_prob="0.992" acc_prob="0.866">
            <gDNA_intron_boundary i_start="62849" i_stop="64360" i_length="1512"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="64361" e_stop="64443" e_length="83"/>
          </exon>
          <intron i_serial="2" don_prob="0.966" acc_prob="0.790">
            <gDNA_intron_boundary i_start="64444" i_stop="64528" i_length="85"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="64529" e_stop="64649" e_length="121"/>
          </exon>
          <intron i_serial="3" don_prob="0.901" acc_prob="0.975">
            <gDNA_intron_boundary i_start="64650" i_stop="64790" i_length="141"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="64791" e_stop="64801" e_length="11"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62655" stop="62848"/>
              <exon start="64361" stop="64443"/>
              <exon start="64529" stop="64649"/>
              <exon start="64791" stop="64801"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U345514" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTTTGGGAAGGTTTTTCAGGTGAAGATGAAGGGGTATGGTGGTGAGGGTGAGGGTGATGGAATATTAGCCATGAAAGTGATGAGGAAGGACACAGTAATCAAGAATAACCATGTGGATTATATGAGAGCTGAGAGGGATATTCTCACCAAAGTTGAGCACCCTTTTATTGTGCAGCTTAGATACTCATTTCAG : ACGAAGTCTAAGCTTTACTTGATTTTGGATTTTATAAATGGAGGACATCTTTTCTATCATTTATACAGACAAGGGATTTTCAG : TGAGGACCAGGCAAGGATTTATGCTGCTGAGATAGTTTCTGCTGTTTCACATCTTCACCAGAGAGGGATCGTGCATCGAGACCTCAAACCAGAAAATATTCTCATGGATGGTGATGGACAT : GTCATGCTGAC</gDNA_template>
            <first_frame> L  L  G  R  F  F  R  *  R  *  R  G  M  V  V  R  V  R  V  M  E  Y  *  P  *  K  *  *  G  R  T  Q  *  S  R  I  T  M  W  I  I  *  E  L  R  G  I  F  S  P  K  L  S  T  L  L  L  C  S  L  D  T  H  F  R :   R  S  L  S  F  T  *  F  W  I  L  *  M  E  D  I  F  S  I  I  Y  T  D  K  G  F  S   : V  R  T  R  Q  G  F  M  L  L  R  *  F  L  L  F  H  I  F  T  R  E  G  S  C  I  E  T  S  N  Q  K  I  F  S  W  M  V  M  D  M :   S  C  *  </first_frame>
            <second_frame>  F  W  E  G  F  S  G  E  D  E  G  V  W  W  *  G  *  G  *  W  N  I  S  H  E  S  D  E  E  G  H  S  N  Q  E  *  P  C  G  L  Y  E  S  *  E  G  Y  S  H  Q  S  *  A  P  F  Y  C  A  A  *  I  L  I  S   : D  E  V  *  A  L  L  D  F  G  F  Y  K  W  R  T  S  F  L  S  F  I  Q  T  R  D  F  Q  :  *  G  P  G  K  D  L  C  C  *  D  S  F  C  C  F  T  S  S  P  E  R  D  R  A  S  R  P  Q  T  R  K  Y  S  H  G  W  *  W  T   : C  H  A  D </second_frame>
            <third_frame>   F  G  K  V  F  Q  V  K  M  K  G  Y  G  G  E  G  E  G  D  G  I  L  A  M  K  V  M  R  K  D  T  V  I  K  N  N  H  V  D  Y  M  R  A  E  R  D  I  L  T  K  V  E  H  P  F  I  V  Q  L  R  Y  S  F  Q  :  T  K  S  K  L  Y  L  I  L  D  F  I  N  G  G  H  L  F  Y  H  L  Y  R  Q  G  I  F  S :   E  D  Q  A  R  I  Y  A  A  E  I  V  S  A  V  S  H  L  H  Q  R  G  I  V  H  R  D  L  K  P  E  N  I  L  M  D  G  D  G  H  :  V  M  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0002C17.2" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="62657" stop="62848"/>
                    <exon start="64361" stop="64443"/>
                    <exon start="64529" stop="64649"/>
                    <exon start="64791" stop="64799"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>405</number_coding_nucleotides>
                  <number_encoded_amino_acids>135</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FGKVFQVKMKGYGGEGEGDGILAMKVMRKDTVIKNNHVDYMRAERDILTKVEHPFIVQLRYSFQTKSKLYLILDFINGGHLFYHLYRQGIFSEDQARIYAAEIVSAVSHLHQRGIVHRDLKPENILMDGDGHVML</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="65438" PGL_stop="65829"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="65438" e_stop="65829"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="65438" e_stop="65829" e_length="392"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65438" stop="65829"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U327735" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GATCAAAAGTCACAAGTGGTTCCGCACAATCAACTGGAAGAAACTTGATGCCAGAGAACTACAGCCTAAGTTCAAACCAGATGTAATTGGCAGAGATTGCACAGCCAATTTCGATAAATGTTGGACTACGATGCCACCGGATGACTCACCAGCATCTACTCCGACAACAGGCGAACACTTTCAAGGTTACACTTATGTAGCACCAAATCCTTGGCTCTCCTCTAGTTGATTTAAGTCTTTATCCTGACAAAATTCCGAACTTTTAGTTTGCTATTGTAAGTCATTCTTTTTTAGAGAGAGGATCATGAGAAGTGTATGGATCAGATTGTATCATGATAAAAGCAAATCTTTCTAACTCTTTTTGTGTACTATTGTAAGCTCAATTCTTCTTT</gDNA_template>
            <first_frame> D  Q  K  S  Q  V  V  P  H  N  Q  L  E  E  T  *  C  Q  R  T  T  A  *  V  Q  T  R  C  N  W  Q  R  L  H  S  Q  F  R  *  M  L  D  Y  D  A  T  G  *  L  T  S  I  Y  S  D  N  R  R  T  L  S  R  L  H  L  C  S  T  K  S  L  A  L  L  *  L  I  *  V  F  I  L  T  K  F  R  T  F  S  L  L  L  *  V  I  L  F  *  R  E  D  H  E  K  C  M  D  Q  I  V  S  *  *  K  Q  I  F  L  T  L  F  V  Y  Y  C  K  L  N  S  S   </first_frame>
            <second_frame>  I  K  S  H  K  W  F  R  T  I  N  W  K  K  L  D  A  R  E  L  Q  P  K  F  K  P  D  V  I  G  R  D  C  T  A  N  F  D  K  C  W  T  T  M  P  P  D  D  S  P  A  S  T  P  T  T  G  E  H  F  Q  G  Y  T  Y  V  A  P  N  P  W  L  S  S  S  *  F  K  S  L  S  *  Q  N  S  E  L  L  V  C  Y  C  K  S  F  F  F  R  E  R  I  M  R  S  V  W  I  R  L  Y  H  D  K  S  K  S  F  *  L  F  L  C  T  I  V  S  S  I  L  L  </second_frame>
            <third_frame>   S  K  V  T  S  G  S  A  Q  S  T  G  R  N  L  M  P  E  N  Y  S  L  S  S  N  Q  M  *  L  A  E  I  A  Q  P  I  S  I  N  V  G  L  R  C  H  R  M  T  H  Q  H  L  L  R  Q  Q  A  N  T  F  K  V  T  L  M  *  H  Q  I  L  G  S  P  L  V  D  L  S  L  Y  P  D  K  I  P  N  F  *  F  A  I  V  S  H  S  F  L  E  R  G  S  *  E  V  Y  G  S  D  C  I  M  I  K  A  N  L  S  N  S  F  C  V  L  L  *  A  Q  F  F  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0002C17.2" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="65439" stop="65666"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>225</number_coding_nucleotides>
                  <number_encoded_amino_acids>75</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IKSHKWFRTINWKKLDARELQPKFKPDVIGRDCTANFDKCWTTMPPDDSPASTPTTGEHFQGYTYVAPNPWLSSS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="70856" PGL_stop="70040"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="70856" e_stop="70040"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="70856" e_stop="70040" e_length="817"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70856" stop="70040"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U314475" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTCGATCTAGCCTCTTTGATATCACCACTGACTCGGTATTCATTTTTTATTCATGTCTTCCATTTATCAAACTTGTTTCTCACCCTTATTATTAATCGAGTGAAATCTAACAATTTCTTTGAATTACTACAATTATATTTCTCTCATTTTGCCATTTATTGGTGAATTTCCTTTGAGTAGGTGGTAAGTGATTGTGTATAGAGAGAGAAAATTAGATGGTTTGATTTTAATACTTCGATCTTATCACTCTTTAACAGAAGGAGTAGTAATGTGATTCTTTCATTGTTCTTGTTTTGAATTGATATTGATGCTGGGTTTTTGTTGTTATTCTTTTGTGTCTTTTCTCTAATAGATTCTTTTTCATTGGTGTCAAGTTCTTTGTTTATACTTGCCTTCTGGAAAAGATAGAAATATTGAATTCTGATGAATACAAACTGCCACTTGGATATTTTGTTTTTCAGATTTTCCATTTCTAAGGTTCTCTTTCTATGACAAGCAGGTATCAGTAATGCCAATAGAAGAGGTGGAAAATAAGCAAGAAATCCCAGTTCCAGCACCAGCAACATTACCTCCTGTAGAAACTACCAAAACCAATGCATTTTCGGTGGCACCGGCTGTTGCTCCTATCATATTTCCAGTACAGGTTAATAAGTCAAGAGAGAATCCAACTCTGTTTCGACATGATCATGCGAATTCATCGATGCTAGTTGGTCCTGTTCCTATGTTTTCAATGCCTAATCCATCAAAATCGATCGACCTTAACGCCAACCACAATTCAACAATCGAGCCATCGTCGTTGTCACTGAGATTATCATTG</gDNA_template>
            <first_frame> V  D  L  A  S  L  I  S  P  L  T  R  Y  S  F  F  I  H  V  F  H  L  S  N  L  F  L  T  L  I  I  N  R  V  K  S  N  N  F  F  E  L  L  Q  L  Y  F  S  H  F  A  I  Y  W  *  I  S  F  E  *  V  V  S  D  C  V  *  R  E  K  I  R  W  F  D  F  N  T  S  I  L  S  L  F  N  R  R  S  S  N  V  I  L  S  L  F  L  F  *  I  D  I  D  A  G  F  L  L  L  F  F  C  V  F  S  L  I  D  S  F  S  L  V  S  S  S  L  F  I  L  A  F  W  K  R  *  K  Y  *  I  L  M  N  T  N  C  H  L  D  I  L  F  F  R  F  S  I  S  K  V  L  F  L  *  Q  A  G  I  S  N  A  N  R  R  G  G  K  *  A  R  N  P  S  S  S  T  S  N  I  T  S  C  R  N  Y  Q  N  Q  C  I  F  G  G  T  G  C  C  S  Y  H  I  S  S  T  G  *  *  V  K  R  E  S  N  S  V  S  T  *  S  C  E  F  I  D  A  S  W  S  C  S  Y  V  F  N  A  *  S  I  K  I  D  R  P  *  R  Q  P  Q  F  N  N  R  A  I  V  V  V  T  E  I  I  I  </first_frame>
            <second_frame>  S  I  *  P  L  *  Y  H  H  *  L  G  I  H  F  L  F  M  S  S  I  Y  Q  T  C  F  S  P  L  L  L  I  E  *  N  L  T  I  S  L  N  Y  Y  N  Y  I  S  L  I  L  P  F  I  G  E  F  P  L  S  R  W  *  V  I  V  Y  R  E  R  K  L  D  G  L  I  L  I  L  R  S  Y  H  S  L  T  E  G  V  V  M  *  F  F  H  C  S  C  F  E  L  I  L  M  L  G  F  C  C  Y  S  F  V  S  F  L  *  *  I  L  F  H  W  C  Q  V  L  C  L  Y  L  P  S  G  K  D  R  N  I  E  F  *  *  I  Q  T  A  T  W  I  F  C  F  S  D  F  P  F  L  R  F  S  F  Y  D  K  Q  V  S  V  M  P  I  E  E  V  E  N  K  Q  E  I  P  V  P  A  P  A  T  L  P  P  V  E  T  T  K  T  N  A  F  S  V  A  P  A  V  A  P  I  I  F  P  V  Q  V  N  K  S  R  E  N  P  T  L  F  R  H  D  H  A  N  S  S  M  L  V  G  P  V  P  M  F  S  M  P  N  P  S  K  S  I  D  L  N  A  N  H  N  S  T  I  E  P  S  S  L  S  L  R  L  S  L </second_frame>
            <third_frame>   R  S  S  L  F  D  I  T  T  D  S  V  F  I  F  Y  S  C  L  P  F  I  K  L  V  S  H  P  Y  Y  *  S  S  E  I  *  Q  F  L  *  I  T  T  I  I  F  L  S  F  C  H  L  L  V  N  F  L  *  V  G  G  K  *  L  C  I  E  R  E  N  *  M  V  *  F  *  Y  F  D  L  I  T  L  *  Q  K  E  *  *  C  D  S  F  I  V  L  V  L  N  *  Y  *  C  W  V  F  V  V  I  L  L  C  L  F  S  N  R  F  F  F  I  G  V  K  F  F  V  Y  T  C  L  L  E  K  I  E  I  L  N  S  D  E  Y  K  L  P  L  G  Y  F  V  F  Q  I  F  H  F  *  G  S  L  S  M  T  S  R  Y  Q  *  C  Q  *  K  R  W  K  I  S  K  K  S  Q  F  Q  H  Q  Q  H  Y  L  L  *  K  L  P  K  P  M  H  F  R  W  H  R  L  L  L  L  S  Y  F  Q  Y  R  L  I  S  Q  E  R  I  Q  L  C  F  D  M  I  M  R  I  H  R  C  *  L  V  L  F  L  C  F  Q  C  L  I  H  Q  N  R  S  T  L  T  P  T  T  I  Q  Q  S  S  H  R  R  C  H  *  D  Y  H   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0002C17.2" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="70429" stop="70040"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>390</number_coding_nucleotides>
                  <number_encoded_amino_acids>130</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IQTATWIFCFSDFPFLRFSFYDKQVSVMPIEEVENKQEIPVPAPATLPPVETTKTNAFSVAPAVAPIIFPVQVNKSRENPTLFRHDHANSSMLVGPVPMFSMPNPSKSIDLNANHNSTIEPSSLSLRLSL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="82035" PGL_stop="78782"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="82035" e_stop="81888"/>
            <exon e_start="80456" e_stop="80333"/>
            <exon e_start="80209" e_stop="80128"/>
            <exon e_start="80055" e_stop="79967"/>
            <exon e_start="79885" e_stop="79811"/>
            <exon e_start="79719" e_stop="79665"/>
            <exon e_start="79244" e_stop="79125"/>
            <exon e_start="79040" e_stop="78948"/>
            <exon e_start="78877" e_stop="78782"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.915" e_score="1.000"/>
          <exon-intron don_prob="0.975" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.948" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.997" e_score="0.989"/>
          <exon-intron don_prob="0.830" acc_prob="0.970" e_score="1.000"/>
          <exon-intron don_prob="0.377" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.866" acc_prob="0.199" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.156" e_score="1.000"/>
          <exon-only e_score="0.958"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="82035" e_stop="81888" e_length="148"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.915">
            <gDNA_intron_boundary i_start="81887" i_stop="80457" i_length="1431"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="80456" e_stop="80333" e_length="124"/>
          </exon>
          <intron i_serial="2" don_prob="0.975" acc_prob="0.999">
            <gDNA_intron_boundary i_start="80332" i_stop="80210" i_length="123"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="80209" e_stop="80128" e_length="82"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.948">
            <gDNA_intron_boundary i_start="80127" i_stop="80056" i_length="72"/>
          </intron>
          <exon e_serial="4" e_score="0.989">
            <gDNA_exon_boundary e_start="80055" e_stop="79967" e_length="89"/>
          </exon>
          <intron i_serial="4" don_prob="0.982" acc_prob="0.997">
            <gDNA_intron_boundary i_start="79966" i_stop="79886" i_length="81"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="79885" e_stop="79811" e_length="75"/>
          </exon>
          <intron i_serial="5" don_prob="0.830" acc_prob="0.970">
            <gDNA_intron_boundary i_start="79810" i_stop="79720" i_length="91"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="79719" e_stop="79665" e_length="55"/>
          </exon>
          <intron i_serial="6" don_prob="0.377" acc_prob="0.994">
            <gDNA_intron_boundary i_start="79664" i_stop="79245" i_length="420"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="79244" e_stop="79125" e_length="120"/>
          </exon>
          <intron i_serial="7" don_prob="0.866" acc_prob="0.199">
            <gDNA_intron_boundary i_start="79124" i_stop="79041" i_length="84"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="79040" e_stop="78948" e_length="93"/>
          </exon>
          <intron i_serial="8" don_prob="0.992" acc_prob="0.156">
            <gDNA_intron_boundary i_start="78947" i_stop="78878" i_length="70"/>
          </intron>
          <exon e_serial="9" e_score="0.958">
            <gDNA_exon_boundary e_start="78877" e_stop="78782" e_length="96"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82035" stop="81888"/>
              <exon start="80456" stop="80333"/>
              <exon start="80209" stop="80128"/>
              <exon start="80055" stop="79967"/>
              <exon start="79885" stop="79811"/>
              <exon start="79719" stop="79665"/>
              <exon start="79244" stop="79125"/>
              <exon start="79040" stop="78948"/>
              <exon start="78877" stop="78782"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U337475" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACAATCGGAGCGTATTCAAAGTGGCTTGATGCTTCATCAAATGGATTTTCACATTTGCCCACACTCATTGATATTCTTGTGAGAGGCATGAGCACGTGTGAAGATTCCGCAGCTGCAGCTGCTTTAGCTTTCAGACACATATGCAATG : ATTGCAAGAAGAAGCTTTGTGGGTCACTAGATGGTCTGTTTCAAATTTACCAAACGGCAGTCATTGGGGAAGGTCCCTTCAAAGTTTCCGCGGAAGATTCGTTGCATCTGGTTGAAGCTTTAAG : TATGGTTATTACAGAGCTTCCTTCGGAACATGCTAAGAAGGCACTTGAGGCAGTATGCCTGCCATCTGTTGCTCAGTTACAA : GAGATGATCAATCAAGGTCCCCAAGTTTTGGGGCAAAAAAATGCTCGGGAATTAACTGTTCATTTTGATCGACTTGCAAATATATTTAG : ATATGTAAATCACCCAGAAGCGGTTGCAGATGCAATTCAAAAACTTTGGCCAATATTCAAAGCCATTTTTGATGT : TCGTGCTTGGGACATGCGGACGATGGAGTCTCTTTGCCGGGCTTGTAAAAATGCT : GTACGAACTTCTAAGAGGCTCATGGGGGTTACAATTGGGGCGATGCTGGAGGAAATACAAGGACTATATGGACAACACCATCAGCCGTGTTTTCTTTATCTCTCTAGTGAAGTCATTAAG : ATATTTGGTTCAGATCCATCCTGTGCAAATTACTTGAAAGTTCTCATTGAGTCTCTCTTTAGCCATACAGCATGTCTTCTTACAAAGATTCAG : GATTTCACTTCCCGTCCGGATATAGCAGATGATTGTTTTTTGCTGGCATCAAGATGTATCCGATACTGTCCTCAACTATTTTTTCCCTCTACTGTG</gDNA_template>
            <first_frame> T  I  G  A  Y  S  K  W  L  D  A  S  S  N  G  F  S  H  L  P  T  L  I  D  I  L  V  R  G  M  S  T  C  E  D  S  A  A  A  A  A  L  A  F  R  H  I  C  N   : D  C  K  K  K  L  C  G  S  L  D  G  L  F  Q  I  Y  Q  T  A  V  I  G  E  G  P  F  K  V  S  A  E  D  S  L  H  L  V  E  A  L  S :   M  V  I  T  E  L  P  S  E  H  A  K  K  A  L  E  A  V  C  L  P  S  V  A  Q  L  Q  :  E  M  I  N  Q  G  P  Q  V  L  G  Q  K  N  A  R  E  L  T  V  H  F  D  R  L  A  N  I  F  R :   Y  V  N  H  P  E  A  V  A  D  A  I  Q  K  L  W  P  I  F  K  A  I  F  D  V :   R  A  W  D  M  R  T  M  E  S  L  C  R  A  C  K  N  A  :  V  R  T  S  K  R  L  M  G  V  T  I  G  A  M  L  E  E  I  Q  G  L  Y  G  Q  H  H  Q  P  C  F  L  Y  L  S  S  E  V  I  K  :  I  F  G  S  D  P  S  C  A  N  Y  L  K  V  L  I  E  S  L  F  S  H  T  A  C  L  L  T  K  I  Q  :  D  F  T  S  R  P  D  I  A  D  D  C  F  L  L  A  S  R  C  I  R  Y  C  P  Q  L  F  F  P  S  T  V </first_frame>
            <second_frame>  Q  S  E  R  I  Q  S  G  L  M  L  H  Q  M  D  F  H  I  C  P  H  S  L  I  F  L  *  E  A  *  A  R  V  K  I  P  Q  L  Q  L  L  *  L  S  D  T  Y  A  M  :  I  A  R  R  S  F  V  G  H  *  M  V  C  F  K  F  T  K  R  Q  S  L  G  K  V  P  S  K  F  P  R  K  I  R  C  I  W  L  K  L  *   : V  W  L  L  Q  S  F  L  R  N  M  L  R  R  H  L  R  Q  Y  A  C  H  L  L  L  S  Y  K :   R  *  S  I  K  V  P  K  F  W  G  K  K  M  L  G  N  *  L  F  I  L  I  D  L  Q  I  Y  L   : D  M  *  I  T  Q  K  R  L  Q  M  Q  F  K  N  F  G  Q  Y  S  K  P  F  L  M   : F  V  L  G  T  C  G  R  W  S  L  F  A  G  L  V  K  M  L :   Y  E  L  L  R  G  S  W  G  L  Q  L  G  R  C  W  R  K  Y  K  D  Y  M  D  N  T  I  S  R  V  F  F  I  S  L  V  K  S  L  R :   Y  L  V  Q  I  H  P  V  Q  I  T  *  K  F  S  L  S  L  S  L  A  I  Q  H  V  F  L  Q  R  F  R :   I  S  L  P  V  R  I  *  Q  M  I  V  F  C  W  H  Q  D  V  S  D  T  V  L  N  Y  F  F  P  L  L   </second_frame>
            <third_frame>   N  R  S  V  F  K  V  A  *  C  F  I  K  W  I  F  T  F  A  H  T  H  *  Y  S  C  E  R  H  E  H  V  *  R  F  R  S  C  S  C  F  S  F  Q  T  H  M  Q  * :   L  Q  E  E  A  L  W  V  T  R  W  S  V  S  N  L  P  N  G  S  H  W  G  R  S  L  Q  S  F  R  G  R  F  V  A  S  G  *  S  F  K  :  Y  G  Y  Y  R  A  S  F  G  T  C  *  E  G  T  *  G  S  M  P  A  I  C  C  S  V  T   : R  D  D  Q  S  R  S  P  S  F  G  A  K  K  C  S  G  I  N  C  S  F  *  S  T  C  K  Y  I  *  :  I  C  K  S  P  R  S  G  C  R  C  N  S  K  T  L  A  N  I  Q  S  H  F  *  C  :  S  C  L  G  H  A  D  D  G  V  S  L  P  G  L  *  K  C   : C  T  N  F  *  E  A  H  G  G  Y  N  W  G  D  A  G  G  N  T  R  T  I  W  T  T  P  S  A  V  F  S  L  S  L  *  *  S  H  *   : D  I  W  F  R  S  I  L  C  K  L  L  E  S  S  H  *  V  S  L  *  P  Y  S  M  S  S  Y  K  D  S   : G  F  H  F  P  S  G  Y  S  R  *  L  F  F  A  G  I  K  M  Y  P  I  L  S  S  T  I  F  S  L  Y  C  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0002C17.2" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="82035" stop="81888"/>
                    <exon start="80456" stop="80333"/>
                    <exon start="80209" stop="80128"/>
                    <exon start="80055" stop="79967"/>
                    <exon start="79885" stop="79811"/>
                    <exon start="79719" stop="79665"/>
                    <exon start="79244" stop="79125"/>
                    <exon start="79040" stop="78948"/>
                    <exon start="78877" stop="78782"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>882</number_coding_nucleotides>
                  <number_encoded_amino_acids>294</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TIGAYSKWLDASSNGFSHLPTLIDILVRGMSTCEDSAAAAALAFRHICNDCKKKLCGSLDGLFQIYQTAVIGEGPFKVSAEDSLHLVEALSMVITELPSEHAKKALEAVCLPSVAQLQEMINQGPQVLGQKNARELTVHFDRLANIFRYVNHPEAVADAIQKLWPIFKAIFDVRAWDMRTMESLCRACKNAVRTSKRLMGVTIGAMLEEIQGLYGQHHQPCFLYLSSEVIKIFGSDPSCANYLKVLIESLFSHTACLLTKIQDFTSRPDIADDCFLLASRCIRYCPQLFFPSTV</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="94663" PGL_stop="104426"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="94663" e_stop="95095"/>
            <exon e_start="100537" e_stop="100644"/>
            <exon e_start="100781" e_stop="101056"/>
            <exon e_start="103900" e_stop="104426"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.934" acc_prob="0.992" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="94663" e_stop="95095" e_length="433"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.997">
            <gDNA_intron_boundary i_start="95096" i_stop="100536" i_length="5441"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="100537" e_stop="100644" e_length="108"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="100645" i_stop="100780" i_length="136"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="100781" e_stop="101056" e_length="276"/>
          </exon>
          <intron i_serial="3" don_prob="0.934" acc_prob="0.992">
            <gDNA_intron_boundary i_start="101057" i_stop="103899" i_length="2843"/>
          </intron>
          <exon e_serial="4" e_score="0.998">
            <gDNA_exon_boundary e_start="103900" e_stop="104426" e_length="527"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94663" stop="95095"/>
              <exon start="100537" stop="100644"/>
              <exon start="100781" stop="101056"/>
              <exon start="103900" stop="104426"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U315590" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATTGAAAGGGCAAATTGGGCGAAAATGGTGGCACTATCACTGTACAAGGGAAATCTCCACAGAGTACCTGAAACTCCACGGCGATGGCTAGTGCCAACCCCCAAAATCTCTCATAAGGACTTCCAATGTCTCCTCCGTCGCCGGTCCCGAGCCCTCTCTCGCCTCCAAAATCCTCCCGATGTCTCTCCTACCACCGCCACCGCTTCAAACCCTAACCCTAACCTCAAAACTGATACCAAATCCAAACCTGAGGATGAGGTTCCTGTTTCGATTCCAGTGAAGATCGAGAAGGAGGAAGAGGATGTTCGAGTGGAGAATGTGAAAGAGCCGGAGAAATTGGTTGATTCATCTGCTGTCGTGGTTGAACCTAAGCTTGAGGTTTTGGAAAACGATCAGAAATTGGAGGGTCAGGTGAATCCCTCTGGTGTGGAG : ACTAGCAACAAAGAGGATGCAACTGATAATCAGAAAAGAAAGGAGATTGAGGATAAATTACAAGTTCTGAATATGAAAAAGCATGGTTTGGTACAATTACTAAAACAG : ATTTTGAATGCAGAAGAGGAGCTGAAGAGACGAAGCATGCAAGGAATGGCAGTGCGGCCATCACCCCCACTTCAAGTGGATACAACAAACGACACTGGATCTATAACTAAACTAAACACACCTAGAATGGGCTTGGATGGTAACCCCATCGGTGAGGTGGATGGAGATGGAGGTGATGATGCATCCAACCAGAACACACTTCCTCGGAATTTGCTTCGTTTGAGCAGTACATCACCATCTTCAGATTCTCAACTGAGGAAGACCCCCTATAATGTG : GTTCCTCTCGCTTCACGATCTGTTGGAGTTACTGTTAGTCCTTCACGGTTTGCACCTCCGGGACAGCAAGGGCAACCTTCAAGTCTCCCCCCAGTGTCCTTATCTGGAACGAACATTGTTGCCTCCTCTCCTTCTCCTGTAGCATCAGGCGGCACTTCAGCATTTCGAGATCGGTTTGCAAGCCCATGAAAATGGGAGTTGTGCTAGTTGTTACTCCTCCTGTCAGCTGGCTTTCTGTTCTCTCAACCTCATTCTAAGTTTCAACTGGCTAATCTATGAAGCTGTAAATTATTCTGTAGTTCCAAATTGGTCATTCGCTGTAACGGTAGCAGTGACGATGCAGTGTCTTTAAGTCTGGTGCCTTCTAGTTGGAAGTATAGTATTTCCGTTAATCTGGCTGGGTGTGTGTCCATCCGATACTTGTGAAGTTTCCCATGGTCATGTTTTTAGTTCTTAAAAGATGTTAGAACTGAATATCCTATGTACATATATTATGCCATTTTGCTTTTAAGTCGTTAAGTTGTATT</gDNA_template>
            <first_frame> N  *  K  G  K  L  G  E  N  G  G  T  I  T  V  Q  G  K  S  P  Q  S  T  *  N  S  T  A  M  A  S  A  N  P  Q  N  L  S  *  G  L  P  M  S  P  P  S  P  V  P  S  P  L  S  P  P  K  S  S  R  C  L  S  Y  H  R  H  R  F  K  P  *  P  *  P  Q  N  *  Y  Q  I  Q  T  *  G  *  G  S  C  F  D  S  S  E  D  R  E  G  G  R  G  C  S  S  G  E  C  E  R  A  G  E  I  G  *  F  I  C  C  R  G  *  T  *  A  *  G  F  G  K  R  S  E  I  G  G  S  G  E  S  L  W  C  G   : D  *  Q  Q  R  G  C  N  *  *  S  E  K  K  G  D  *  G  *  I  T  S  S  E  Y  E  K  A  W  F  G  T  I  T  K  T   : D  F  E  C  R  R  G  A  E  E  T  K  H  A  R  N  G  S  A  A  I  T  P  T  S  S  G  Y  N  K  R  H  W  I  Y  N  *  T  K  H  T  *  N  G  L  G  W  *  P  H  R  *  G  G  W  R  W  R  *  *  C  I  Q  P  E  H  T  S  S  E  F  A  S  F  E  Q  Y  I  T  I  F  R  F  S  T  E  E  D  P  L  *  C   : G  S  S  R  F  T  I  C  W  S  Y  C  *  S  F  T  V  C  T  S  G  T  A  R  A  T  F  K  S  P  P  S  V  L  I  W  N  E  H  C  C  L  L  S  F  S  C  S  I  R  R  H  F  S  I  S  R  S  V  C  K  P  M  K  M  G  V  V  L  V  V  T  P  P  V  S  W  L  S  V  L  S  T  S  F  *  V  S  T  G  *  S  M  K  L  *  I  I  L  *  F  Q  I  G  H  S  L  *  R  *  Q  *  R  C  S  V  F  K  S  G  A  F  *  L  E  V  *  Y  F  R  *  S  G  W  V  C  V  H  P  I  L  V  K  F  P  M  V  M  F  L  V  L  K  R  C  *  N  *  I  S  Y  V  H  I  L  C  H  F  A  F  K  S  L  S  C  I </first_frame>
            <second_frame>  I  E  R  A  N  W  A  K  M  V  A  L  S  L  Y  K  G  N  L  H  R  V  P  E  T  P  R  R  W  L  V  P  T  P  K  I  S  H  K  D  F  Q  C  L  L  R  R  R  S  R  A  L  S  R  L  Q  N  P  P  D  V  S  P  T  T  A  T  A  S  N  P  N  P  N  L  K  T  D  T  K  S  K  P  E  D  E  V  P  V  S  I  P  V  K  I  E  K  E  E  E  D  V  R  V  E  N  V  K  E  P  E  K  L  V  D  S  S  A  V  V  V  E  P  K  L  E  V  L  E  N  D  Q  K  L  E  G  Q  V  N  P  S  G  V  E  :  T  S  N  K  E  D  A  T  D  N  Q  K  R  K  E  I  E  D  K  L  Q  V  L  N  M  K  K  H  G  L  V  Q  L  L  K  Q  :  I  L  N  A  E  E  E  L  K  R  R  S  M  Q  G  M  A  V  R  P  S  P  P  L  Q  V  D  T  T  N  D  T  G  S  I  T  K  L  N  T  P  R  M  G  L  D  G  N  P  I  G  E  V  D  G  D  G  G  D  D  A  S  N  Q  N  T  L  P  R  N  L  L  R  L  S  S  T  S  P  S  S  D  S  Q  L  R  K  T  P  Y  N  V  :  V  P  L  A  S  R  S  V  G  V  T  V  S  P  S  R  F  A  P  P  G  Q  Q  G  Q  P  S  S  L  P  P  V  S  L  S  G  T  N  I  V  A  S  S  P  S  P  V  A  S  G  G  T  S  A  F  R  D  R  F  A  S  P  *  K  W  E  L  C  *  L  L  L  L  L  S  A  G  F  L  F  S  Q  P  H  S  K  F  Q  L  A  N  L  *  S  C  K  L  F  C  S  S  K  L  V  I  R  C  N  G  S  S  D  D  A  V  S  L  S  L  V  P  S  S  W  K  Y  S  I  S  V  N  L  A  G  C  V  S  I  R  Y  L  *  S  F  P  W  S  C  F  *  F  L  K  D  V  R  T  E  Y  P  M  Y  I  Y  Y  A  I  L  L  L  S  R  *  V  V   </second_frame>
            <third_frame>   L  K  G  Q  I  G  R  K  W  W  H  Y  H  C  T  R  E  I  S  T  E  Y  L  K  L  H  G  D  G  *  C  Q  P  P  K  S  L  I  R  T  S  N  V  S  S  V  A  G  P  E  P  S  L  A  S  K  I  L  P  M  S  L  L  P  P  P  P  L  Q  T  L  T  L  T  S  K  L  I  P  N  P  N  L  R  M  R  F  L  F  R  F  Q  *  R  S  R  R  R  K  R  M  F  E  W  R  M  *  K  S  R  R  N  W  L  I  H  L  L  S  W  L  N  L  S  L  R  F  W  K  T  I  R  N  W  R  V  R  *  I  P  L  V  W  R :   L  A  T  K  R  M  Q  L  I  I  R  K  E  R  R  L  R  I  N  Y  K  F  *  I  *  K  S  M  V  W  Y  N  Y  *  N  R :   F  *  M  Q  K  R  S  *  R  D  E  A  C  K  E  W  Q  C  G  H  H  P  H  F  K  W  I  Q  Q  T  T  L  D  L  *  L  N  *  T  H  L  E  W  A  W  M  V  T  P  S  V  R  W  M  E  M  E  V  M  M  H  P  T  R  T  H  F  L  G  I  C  F  V  *  A  V  H  H  H  L  Q  I  L  N  *  G  R  P  P  I  M  W :   F  L  S  L  H  D  L  L  E  L  L  L  V  L  H  G  L  H  L  R  D  S  K  G  N  L  Q  V  S  P  Q  C  P  Y  L  E  R  T  L  L  P  P  L  L  L  L  *  H  Q  A  A  L  Q  H  F  E  I  G  L  Q  A  H  E  N  G  S  C  A  S  C  Y  S  S  C  Q  L  A  F  C  S  L  N  L  I  L  S  F  N  W  L  I  Y  E  A  V  N  Y  S  V  V  P  N  W  S  F  A  V  T  V  A  V  T  M  Q  C  L  *  V  W  C  L  L  V  G  S  I  V  F  P  L  I  W  L  G  V  C  P  S  D  T  C  E  V  S  H  G  H  V  F  S  S  *  K  M  L  E  L  N  I  L  C  T  Y  I  M  P  F  C  F  *  V  V  K  L  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0002C17.2" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="94664" stop="95095"/>
                    <exon start="100537" stop="100644"/>
                    <exon start="100781" stop="101056"/>
                    <exon start="103900" stop="104088"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1002</number_coding_nucleotides>
                  <number_encoded_amino_acids>334</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IERANWAKMVALSLYKGNLHRVPETPRRWLVPTPKISHKDFQCLLRRRSRALSRLQNPPDVSPTTATASNPNPNLKTDTKSKPEDEVPVSIPVKIEKEEEDVRVENVKEPEKLVDSSAVVVEPKLEVLENDQKLEGQVNPSGVETSNKEDATDNQKRKEIEDKLQVLNMKKHGLVQLLKQILNAEEELKRRSMQGMAVRPSPPLQVDTTNDTGSITKLNTPRMGLDGNPIGEVDGDGGDDASNQNTLPRNLLRLSSTSPSSDSQLRKTPYNVVPLASRSVGVTVSPSRFAPPGQQGQPSSLPPVSLSGTNIVASSPSPVASGGTSAFRDRFASP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="94854" e_stop="95095"/>
            <exon e_start="100537" e_stop="100644"/>
            <exon e_start="100781" e_stop="101024"/>
            <exon e_start="104060" e_stop="104172"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.997" e_score="0.988"/>
          <exon-intron don_prob="0.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.973"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.988">
            <gDNA_exon_boundary e_start="94854" e_stop="95095" e_length="242"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.997">
            <gDNA_intron_boundary i_start="95096" i_stop="100536" i_length="5441"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="100537" e_stop="100644" e_length="108"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="100645" i_stop="100780" i_length="136"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="100781" e_stop="101024" e_length="244"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="101025" i_stop="104059" i_length="3035"/>
          </intron>
          <exon e_serial="4" e_score="0.973">
            <gDNA_exon_boundary e_start="104060" e_stop="104172" e_length="113"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94854" stop="95095"/>
              <exon start="100537" stop="100644"/>
              <exon start="100781" stop="101024"/>
              <exon start="104060" stop="104172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335226" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCACCGCCACCGCTTCAAACCCTAACCCTAACCTCAAAACTGATACCAAATCCAAACCTGAGGATGAGGTTCCTGTTTCGATTCCAGTGAAGATCGAGAAGGAGGAAGAGGATGTTCGAGTGGAGAATGTGAAAGAGCCGGAGAAATTGGTTGATTCATCTGCTGTCGTGGTTGAACCTAAGCTTGAGGTTTTGGAAAACGATCAGAAATTGGAGGGTCAGGTGAATCCCTCTGGTGTGGAG : ACTAGCAACAAAGAGGATGCAACTGATAATCAGAAAAGAAAGGAGATTGAGGATAAATTACAAGTTCTGAATATGAAAAAGCATGGTTTGGTACAATTACTAAAACAG : ATTTTGAATGCAGAAGAGGAGCTGAAGAGACGAAGCATGCAAGGAATGGCAGTGCGGCCATCACCCCCACTTCAAGTGGATACAACAAACGACACTGGATCTATAACTAAACTAAACACACCTAGAATGGGCTTGGATGGTAACCCCATCGGTGAGGTGGATGGAGATGGAGGTGATGATGCATCCAACCAGAACACACTTCCTCGGAATTTGCTTCGTTTGAGCAGTACATCACCATCTTCAG : CATTTCGAGATCGGTTTGCAAGCCCATGAAAATGGGAGTTGTGCTAGTTGTTACTCCTCCTGTCAGCTGGCTTTCTGTTCTCTCAACCTCATTCTAAGTTTCAACTGGCTAAT</gDNA_template>
            <first_frame> P  P  P  P  L  Q  T  L  T  L  T  S  K  L  I  P  N  P  N  L  R  M  R  F  L  F  R  F  Q  *  R  S  R  R  R  K  R  M  F  E  W  R  M  *  K  S  R  R  N  W  L  I  H  L  L  S  W  L  N  L  S  L  R  F  W  K  T  I  R  N  W  R  V  R  *  I  P  L  V  W  R :   L  A  T  K  R  M  Q  L  I  I  R  K  E  R  R  L  R  I  N  Y  K  F  *  I  *  K  S  M  V  W  Y  N  Y  *  N  R :   F  *  M  Q  K  R  S  *  R  D  E  A  C  K  E  W  Q  C  G  H  H  P  H  F  K  W  I  Q  Q  T  T  L  D  L  *  L  N  *  T  H  L  E  W  A  W  M  V  T  P  S  V  R  W  M  E  M  E  V  M  M  H  P  T  R  T  H  F  L  G  I  C  F  V  *  A  V  H  H  H  L  Q  :  H  F  E  I  G  L  Q  A  H  E  N  G  S  C  A  S  C  Y  S  S  C  Q  L  A  F  C  S  L  N  L  I  L  S  F  N  W  L   </first_frame>
            <second_frame>  H  R  H  R  F  K  P  *  P  *  P  Q  N  *  Y  Q  I  Q  T  *  G  *  G  S  C  F  D  S  S  E  D  R  E  G  G  R  G  C  S  S  G  E  C  E  R  A  G  E  I  G  *  F  I  C  C  R  G  *  T  *  A  *  G  F  G  K  R  S  E  I  G  G  S  G  E  S  L  W  C  G   : D  *  Q  Q  R  G  C  N  *  *  S  E  K  K  G  D  *  G  *  I  T  S  S  E  Y  E  K  A  W  F  G  T  I  T  K  T   : D  F  E  C  R  R  G  A  E  E  T  K  H  A  R  N  G  S  A  A  I  T  P  T  S  S  G  Y  N  K  R  H  W  I  Y  N  *  T  K  H  T  *  N  G  L  G  W  *  P  H  R  *  G  G  W  R  W  R  *  *  C  I  Q  P  E  H  T  S  S  E  F  A  S  F  E  Q  Y  I  T  I  F  S :   I  S  R  S  V  C  K  P  M  K  M  G  V  V  L  V  V  T  P  P  V  S  W  L  S  V  L  S  T  S  F  *  V  S  T  G  *  </second_frame>
            <third_frame>   T  A  T  A  S  N  P  N  P  N  L  K  T  D  T  K  S  K  P  E  D  E  V  P  V  S  I  P  V  K  I  E  K  E  E  E  D  V  R  V  E  N  V  K  E  P  E  K  L  V  D  S  S  A  V  V  V  E  P  K  L  E  V  L  E  N  D  Q  K  L  E  G  Q  V  N  P  S  G  V  E  :  T  S  N  K  E  D  A  T  D  N  Q  K  R  K  E  I  E  D  K  L  Q  V  L  N  M  K  K  H  G  L  V  Q  L  L  K  Q  :  I  L  N  A  E  E  E  L  K  R  R  S  M  Q  G  M  A  V  R  P  S  P  P  L  Q  V  D  T  T  N  D  T  G  S  I  T  K  L  N  T  P  R  M  G  L  D  G  N  P  I  G  E  V  D  G  D  G  G  D  D  A  S  N  Q  N  T  L  P  R  N  L  L  R  L  S  S  T  S  P  S  S   : A  F  R  D  R  F  A  S  P  *  K  W  E  L  C  *  L  L  L  L  L  S  A  G  F  L  F  S  Q  P  H  S  K  F  Q  L  A  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0002C17.2" strand="+"/>
                <serials PGL_serial="9" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="94856" stop="95095"/>
                    <exon start="100537" stop="100644"/>
                    <exon start="100781" stop="101024"/>
                    <exon start="104060" stop="104088"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>618</number_coding_nucleotides>
                  <number_encoded_amino_acids>206</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TATASNPNPNLKTDTKSKPEDEVPVSIPVKIEKEEEDVRVENVKEPEKLVDSSAVVVEPKLEVLENDQKLEGQVNPSGVETSNKEDATDNQKRKEIEDKLQVLNMKKHGLVQLLKQILNAEEELKRRSMQGMAVRPSPPLQVDTTNDTGSITKLNTPRMGLDGNPIGEVDGDGGDDASNQNTLPRNLLRLSSTSPSSAFRDRFASP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="94754" e_stop="95074"/>
            <exon e_start="100537" e_stop="100644"/>
            <exon e_start="100781" e_stop="101036"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.391" acc_prob="0.997" e_score="0.984"/>
          <exon-intron don_prob="0.000" acc_prob="1.000" e_score="0.991"/>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.984">
            <gDNA_exon_boundary e_start="94754" e_stop="95074" e_length="321"/>
          </exon>
          <intron i_serial="1" don_prob="0.391" acc_prob="0.997">
            <gDNA_intron_boundary i_start="95075" i_stop="100536" i_length="5462"/>
          </intron>
          <exon e_serial="2" e_score="0.991">
            <gDNA_exon_boundary e_start="100537" e_stop="100644" e_length="108"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="100645" i_stop="100780" i_length="136"/>
          </intron>
          <exon e_serial="3" e_score="0.988">
            <gDNA_exon_boundary e_start="100781" e_stop="101036" e_length="256"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94754" stop="95074"/>
              <exon start="100537" stop="100644"/>
              <exon start="100781" stop="101036"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U315591" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTGCCAACCCCCAAAATCTCTCATAAGGACTTCCAATGTCTCCTCCGTCGCCGGTCCCGAGCCCTCTCTCGCCTCCAAAATCCTCCCGATGTCTCTCCTACCACCGCCACCGCTTCAAACCCTAACCCTAACCTCAAAACTGATACCAAATCCAAACCTGAGGATGAGGTTCCTGTTTCGATTCCAGTGAAGATCGAGAAGGAGGAAGAGGATGTTCGAGTGGAGAATGTGAAAGAGCCGGAGAAATTGGTTGATTCATCTGCTGTCGTGGTTGAACCTAAGCTTGAGGTTTTGGAAAACGATCAGAAATTGGAGGGTCAG : ACTAGCAACAAAGAGGATGCAACTGATAATCAGAAAAGAAAGGAGATTGAGGATAAATTACAAGTTCTGAATATGAAAAAGCATGGTTTGGTACAATTACTAAAACAG : ATTTTGAATGCAGAAGAGGAGCTGAAGAGACGAAGCATGCAAGGAATGGCAGTGCGGCCATCACCCCCACTTCAAGTGGATACAACAAACGACACTGGATCTATAACTAAACTAAACACACCTAGAATGGGCTTGGATGGTAACCCCATCGGTGAGGTGGATGGAGATGGAGGTGATGATGCATCCAACCAGAACACACTTCCTCGGAATTTGCTTCGTTTGAGCAGTACATCACCATCTTCAGATTCTCAACTGA</gDNA_template>
            <first_frame> V  P  T  P  K  I  S  H  K  D  F  Q  C  L  L  R  R  R  S  R  A  L  S  R  L  Q  N  P  P  D  V  S  P  T  T  A  T  A  S  N  P  N  P  N  L  K  T  D  T  K  S  K  P  E  D  E  V  P  V  S  I  P  V  K  I  E  K  E  E  E  D  V  R  V  E  N  V  K  E  P  E  K  L  V  D  S  S  A  V  V  V  E  P  K  L  E  V  L  E  N  D  Q  K  L  E  G  Q  :  T  S  N  K  E  D  A  T  D  N  Q  K  R  K  E  I  E  D  K  L  Q  V  L  N  M  K  K  H  G  L  V  Q  L  L  K  Q  :  I  L  N  A  E  E  E  L  K  R  R  S  M  Q  G  M  A  V  R  P  S  P  P  L  Q  V  D  T  T  N  D  T  G  S  I  T  K  L  N  T  P  R  M  G  L  D  G  N  P  I  G  E  V  D  G  D  G  G  D  D  A  S  N  Q  N  T  L  P  R  N  L  L  R  L  S  S  T  S  P  S  S  D  S  Q  L  </first_frame>
            <second_frame>  C  Q  P  P  K  S  L  I  R  T  S  N  V  S  S  V  A  G  P  E  P  S  L  A  S  K  I  L  P  M  S  L  L  P  P  P  P  L  Q  T  L  T  L  T  S  K  L  I  P  N  P  N  L  R  M  R  F  L  F  R  F  Q  *  R  S  R  R  R  K  R  M  F  E  W  R  M  *  K  S  R  R  N  W  L  I  H  L  L  S  W  L  N  L  S  L  R  F  W  K  T  I  R  N  W  R  V  R :   L  A  T  K  R  M  Q  L  I  I  R  K  E  R  R  L  R  I  N  Y  K  F  *  I  *  K  S  M  V  W  Y  N  Y  *  N  R :   F  *  M  Q  K  R  S  *  R  D  E  A  C  K  E  W  Q  C  G  H  H  P  H  F  K  W  I  Q  Q  T  T  L  D  L  *  L  N  *  T  H  L  E  W  A  W  M  V  T  P  S  V  R  W  M  E  M  E  V  M  M  H  P  T  R  T  H  F  L  G  I  C  F  V  *  A  V  H  H  H  L  Q  I  L  N  * </second_frame>
            <third_frame>   A  N  P  Q  N  L  S  *  G  L  P  M  S  P  P  S  P  V  P  S  P  L  S  P  P  K  S  S  R  C  L  S  Y  H  R  H  R  F  K  P  *  P  *  P  Q  N  *  Y  Q  I  Q  T  *  G  *  G  S  C  F  D  S  S  E  D  R  E  G  G  R  G  C  S  S  G  E  C  E  R  A  G  E  I  G  *  F  I  C  C  R  G  *  T  *  A  *  G  F  G  K  R  S  E  I  G  G  S   : D  *  Q  Q  R  G  C  N  *  *  S  E  K  K  G  D  *  G  *  I  T  S  S  E  Y  E  K  A  W  F  G  T  I  T  K  T   : D  F  E  C  R  R  G  A  E  E  T  K  H  A  R  N  G  S  A  A  I  T  P  T  S  S  G  Y  N  K  R  H  W  I  Y  N  *  T  K  H  T  *  N  G  L  G  W  *  P  H  R  *  G  G  W  R  W  R  *  *  C  I  Q  P  E  H  T  S  S  E  F  A  S  F  E  Q  Y  I  T  I  F  R  F  S  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0002C17.2" strand="+"/>
                <serials PGL_serial="9" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="94754" stop="95074"/>
                    <exon start="100537" stop="100644"/>
                    <exon start="100781" stop="101035"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>684</number_coding_nucleotides>
                  <number_encoded_amino_acids>228</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VPTPKISHKDFQCLLRRRSRALSRLQNPPDVSPTTATASNPNPNLKTDTKSKPEDEVPVSIPVKIEKEEEDVRVENVKEPEKLVDSSAVVVEPKLEVLENDQKLEGQTSNKEDATDNQKRKEIEDKLQVLNMKKHGLVQLLKQILNAEEELKRRSMQGMAVRPSPPLQVDTTNDTGSITKLNTPRMGLDGNPIGEVDGDGGDDASNQNTLPRNLLRLSSTSPSSDSQL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 24 chains have been computed
$ 
$ memory statistics:
$ 21560 bytes spliced alignments in total
$ 11 spliced alignments have been stored
$ 1960 bytes was the average size of a spliced alignment
$ 15976 bytes predicted gene locations in total
$ 9 predicted gene locations have been stored
$ 1775 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 25 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-16 14:38:04
-->
