<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-14 20:49:26"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C06HBa0010E05-aP6kq/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C06HBa0010E05-aP6kq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0010E05-aP6kq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U331004" ref_strand="+" ref_description="SGN-U331004        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: AT2G25530.1 | Symbol: None | AFG1-like ATPase family protein, contains Pfam profile: PF03969 AFG1-like ATPase | chr2:10870137-10873835 FORWARD | Aliases: F13B15.19, F13B15_19 (evalue: 6e-49, score=190) genbank/nr: gi|15224744|ref|NP_180123.1| expressed protein [Arabidopsis thaliana] gi|25412329|pir||E84649 hypothetical protein At2g25530 [imported] - Arabidopsis thaliana gi|4432864|gb|AAD20712.1| hypothetical protein [Arabidopsis thaliana](evalue: 4e-47, score=190)">
      <seq>acaactaccggcaaaaaggggttgtgaaatgagaaaactttctgtttttctttctatcggattcgctcatagatcctctaaattccgcagcagcaataatcatcataacgctcttcgtttttacagcaatatttccccttctccctccaagaatcatggacttcttgcacattacaggagtcttgttgaacagggaaagctgcagcatgatccttaccaagaaaaagttgctactgaactagaaaatcttcttggaaggttggagcaatatgaaaaggacatggaggaatatcatgaaaaacttgcacaatgggaggataatagggaaagtcggaggcgtaagcttcttatggaggaagctgaggccaaacaacaaggtgcatttaaaccaataaacaaatctcgcaatattttccaaagatggatgtctcggaaacctgaagatgtggaagaaggagtcgggaaatgggtttcatatctcaatcgagagaagaagttagattcacaagtcggtcgacgtcctgctgctcctccagcccccaaaggactatatctatatggcaatgttgggagtgggaagacaatgattatggatatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0010E05-aP6kq/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0010E05.1" temp_strand="+" temp_description="C06HBa0010E05.1  AC219203.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0010E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="30158" stop="33215"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30458" g_stop="30615" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="158" r_length="158" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30616" i_stop="31885" i_length="1270">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.946" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31886" g_stop="32022" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="295" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32023" i_stop="32114" i_length="92">
            <donor d_prob="0.544" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32115" g_stop="32251" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="432" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="32252" i_stop="32568" i_length="317">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="32569" g_stop="32711" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="433" r_stop="575" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="32712" i_stop="32891" i_length="180">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.682" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="32892" g_stop="32915" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="576" r_stop="599" r_length="24" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0010E05.1" gen_strand="+" ref_id="SGN-U331004" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>599</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0010E05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U331004" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30458" e_stop="30615"/>
          <exon e_start="31886" e_stop="32022"/>
          <exon e_start="32115" e_stop="32251"/>
          <exon e_start="32569" e_stop="32711"/>
          <exon e_start="32892" e_stop="32915"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAACTACCGGCAAAAAGGGGTTGTGAAATGAGAAAACTTTCTGTTTTTCTTTCTATCGGATTCGCTCATAGATCCTCTAAATTCCGCAGCAGCAATAATCATCATAACGCTCTTCGTTTTTACAGCAATATTTCCCCTTCTCCCTCCAAGAATCATGGTTAGTCCCTTTATTATTCTCTCTTGCACCTTTCTAAATGTGATTGCATACGAAAGGTTGCTCTTTTATGCGTTTTCTTCCACAAGTTTGACTGATTATCGAATTTTATCTGAGTTTCGGGTTTTTACCCTCTGGTTTCTAGTGAATAAGCTATGAATTCGGGTCTCTGTGAACTGGAATGAAGTGTAAAGTGTGTGATTGTAACCCCAATTATATGATCTAAACAAAGTATACGGGGATGATAAGATTTTCTAATTAAGAGAGTTTGTTGTGGAATTATTACGGTAGTTAAATGAATTTCATTAGTTGTTCGTCAATCTGATGTGAGTGACCTTCACTTTCTATCAAATTGAGCTAGAGTAGGGAGAAGGTAAGTCCGTAAAAATGTAGGGTGTAATGGGGAAATTCACTTGCATATTCATCTCATTGAGATTAGGCTAGTTTAGTGCCGCTATGCATCATCTCGAAAGTATCACTGATTGCGGCAATAGACGTGAGGCTTATCATAGATGGCGCTAGAAGAAGGCTCAATTCTTTATGTGGACAAGGCAATTTTCATGGTTGATCACCATTGCATCTTCCTTTTCTCTTTCCCCTCTTTATCATACCTTGCCACAACCATCAGTGGTGAATTCATAAAACACTGTGATTATGGAGGTGCAAGGCTCGAGTTAGTTGGAAACTTTTAAAATTTATTCTGCGTAAGAAATATACAATTTGGATGTGTTTTAGATCTGCTGCTTCCGTAAGCTTCTGCTTCGCACTTGTTTAGTCAAAGTGTATGCAGTCAACTCTGAAATTATGTATCTGTTTAGCTGTGTCCCATTTAAATTGATGAATAGGTAACAGAGTGTCCATTATAAGTTATAGAAAGACAAGGAGGCATTGGTGTTTCGCTTAACGACTGAAAAACTCACTGATGTGAGATTATAAGGGGTTGTGATTCCAAAATGCAAACGATTCAGATATCTAGTCTGGTTGTTCTATGAGAATGGAATGATAGATGAAGATGTTACACATAGTATCAAAATCGGATGGTTTATATGAAGTGATACTGGTGTTATGTGATAGAAGTTTGCATAGAAAAGTGAAAGGTAAGTTCTATGGACCTATCATAAGTCCAACAAATGTTATGAAAGATAATCATGTTCTTCAAAAGGTGCAAGTAGCACACCCTTTAACTGTGTACCCATTTGCAGGTTACTTTACTCTTCTCATCAACCTTTCTTGTTTTATAAGCTTGTTGAAAGTAACACTGCTCTTTCTTCAGGACTTCTTGCACATTACAGGAGTCTTGTTGAACAGGGAAAGCTGCAGCATGATCCTTACCAAGAAAAAGTTGCTACTGAACTAGAAAATCTTCTTGGAAGGTTGGAGCAATATGAAAAGGACATGGAGGAATATCATGTGAGAGTTTTATATTGTGATAATGAACTTTTATCGAAGAAATCTGTTCAATGTTGTTCCGAAGACTTTATTTTTAATTTCCATGCTTTTAGGAAAAACTTGCACAATGGGAGGATAATAGGGAAAGTCGGAGGCGTAAGCTTCTTATGGAGGAAGCTGAGGCCAAACAACAAGGTGCATTTAAACCAATAAACAAATCTCGCAATATTTTCCAAAGATGGATGTCTCGGTGAGTGTACATTTATCAACATTCTTATGAAAATGCTTACGTGCAACTTTTTTTGTTGGTCAGAGTTTCTTTACTTTAAATAAATATGTTTCTTTTTTTATAAACAAAGTAGACATTGTTTTGGTTCTCAAAGAGATCAGGAATTGAAGGGATAGGGTGGTCTTACCTTCTTGATACTTTGAATGTGTTGATTGTTTTGGTTTATCACATTCTCTTTTCTCAAGAAAAGATATTACCGACATTAGCATAAAGTATAAATTCAGTTGCTTCTTCTTCACCACCAGTAATTTAATTGGTCATTTTTCTGTTTGGCTCAGGAAACCTGAAGATGTGGAAGAAGGAGTCGGGAAATGGGTTTCATATCTCAATCGAGAGAAGAAGTTAGATTCACAAGTCGGTCGACGTCCTGCTGCTCCTCCAGCCCCCAAAGGACTATATCTATATGGCAATGTTGGGAGTGGTACTATTGCTTCTTTTCTAATTATGTTGCATGGTTGTTCATACATGCTGTACAAATTCATTTCATCCTCATTTTCTATAATGATGAAAATTTTCTTTTATTAGCTTCTATTAGCGATCAGCATCAGCCATTTTCTCACAGACATAAACAAAATCTGACTATATATTGGACCTCATTTAGGGAAGACAATGATTATGGATATGT</genome_strand>
        <mrna_strand>ACAACTACCGGCAAAAAGGGGTTGTGAAATGAGAAAACTTTCTGTTTTTCTTTCTATCGGATTCGCTCATAGATCCTCTAAATTCCGCAGCAGCAATAATCATCATAACGCTCTTCGTTTTTACAGCAATATTTCCCCTTCTCCCTCCAAGAATCATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTCTTGCACATTACAGGAGTCTTGTTGAACAGGGAAAGCTGCAGCATGATCCTTACCAAGAAAAAGTTGCTACTGAACTAGAAAATCTTCTTGGAAGGTTGGAGCAATATGAAAAGGACATGGAGGAATATCAT............................................................................................GAAAAACTTGCACAATGGGAGGATAATAGGGAAAGTCGGAGGCGTAAGCTTCTTATGGAGGAAGCTGAGGCCAAACAACAAGGTGCATTTAAACCAATAAACAAATCTCGCAATATTTTCCAAAGATGGATGTCTCG.............................................................................................................................................................................................................................................................................................................................GAAACCTGAAGATGTGGAAGAAGGAGTCGGGAAATGGGTTTCATATCTCAATCGAGAGAAGAAGTTAGATTCACAAGTCGGTCGACGTCCTGCTGCTCCTCCAGCCCCCAAAGGACTATATCTATATGGCAATGTTGGGAGTG....................................................................................................................................................................................GGAAGACAATGATTATGGATATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0010E05-aP6kq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U342190" ref_strand="-" ref_description="SGN-U342190        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: AT2G25530.1 | Symbol: None | AFG1-like ATPase family protein, contains Pfam profile: PF03969 AFG1-like ATPase | chr2:10870137-10873835 FORWARD | Aliases: F13B15.19, F13B15_19 (evalue: 1e-19, score=93.2) genbank/nr: ATPase,(evalue: 1e-19, score=99.8)">
      <seq>atgttagttcagaaggtgctccatctggcattactaccatgctatctggtcaagaggaaatgtttgcatttcgacgagctgtctcgcgtttgattgagatgcagacacctttgtacgttgaagcagttcagcatgtccatccctattttgattctttgcacaatgagtctgaaaactatagtgtcaattaagagcaatggcctgtgtaattaggtttatataagatctttgtcgaaaattcttttccacccttccaattgtcttgcttttagtctcttttgggaaagacaggttcgatagtaaataaaaggaagtgaacagcgggacaaacatacgctagtcctgtaagttttctcatgtggcatttataaacaaaatgtcacaagaatcttgtatctgactgcaaagttgatttcttggttagctatatcaataagagaggaaatttttctgaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0010E05-aP6kq/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0010E05.1" temp_strand="+" temp_description="C06HBa0010E05.1  AC219203.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0010E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="39205" stop="41953"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39505" g_stop="39584" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39585" i_stop="41279" i_length="1695">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.529" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41280" g_stop="41652" g_length="373"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="453" r_length="373" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="454" polyA_stop="469"/>
      <MATCH_line gen_id="C06HBa0010E05.1" gen_strand="+" ref_id="SGN-U342190" ref_strand="-">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>453</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0010E05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U342190" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="39505" e_stop="39584"/>
          <exon e_start="41280" e_stop="41652"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGTTAGTTCAGGAGGTGCTCCATCTGGCATTACTACCATGCTATCTGGTCAAGAGGAGATGTTTGCATTTCGACGAGCTGTAAGTGATTTTCATTGTTATATGCCTCTGTTTTCTTCGTCTCAATTTCTTTAGCTATGGGCTCACCTCGGGAAAGGAGATAGGGTTGAACGCCTGACGTTGAGGAAATAGAACTCGAAAAATGCTTTCCACCGTTCCATATTGGAAAAGCTCTTGAGTTAAACAAATATTGAAAATCTCTTAACCCTTCAGAACTTCCTGGATTTCTCCTTGTGAATTTCGTCTTAGTTGGATTTTCAGCCTTGGGCGCATCATCATTTACTTATTCAAAAGGAAAAATAAATAAGTTGATAACTATCACTCGATAGTGTTGGTTTCTTATTGGCATATAATTAGAGTAACTTTTTTTCATTTACTACTTTACTTTGGCTTTCTTATCGATGCTGAAAGCATTAAAACTGTGATCTGTGGTACTATTATTTCATCTTTCATTGTCTATAGGGGTTTCAAGCTATTATCCGTAAAGGTGTTAATATCAAGGCCTGGTAATTGCTTTATCTTGTCATATTAGTAATATTTTTTAGCAGCAAAAGAAGGAAGAGGGAGTTGGAAAGGAAATGTGGAAGTTGTGAAAGTGCACCTAACAAAGGGTATTGGTATCTTGAAAATTTTTTGCCACCACATCACAAGTGAAGGAAGATATTTGAACTTTAGATTACCCAGACCCCTTTGAACAACAAACTAGCTCCCAAATCTTCAAATGCTCCTCCAACCTCAGTTAGTACCTCTCGGTCTGAGTAGAGCACTCATCCCCAGTTCAATCTTCTCTGCTATTTTCTATGGATTTCAAACAGAGAAATAATGAAGGTTAGTGTTTTAAAGACAAGATTTAGTGAGAGTCTTGAGAGACCTTTGGTAGAGTCCATTTACCAAGCCTTGTAGTATTAAGAGTAATTTGAACCCCCAAAAATGAATCCAACTAGCTAGCAAGCCTCACGGAAGTCCTCTTCAGCACATGGTCCCACAAGTTATAGGAAAAGGTTTACCCCCTAAGGGGACTCCAAACAAGAAAATGGCAATTTGTGATATTGCCACATGCAATTGAACCGTGTGACTATTATTGTGACCCTTAGGTTGGTGGCAGCTCCTGTTTGTTTTCAAGCCACAAACAACCTTAAAGACATTTAGAAAGGCGAGGATTAACAGAGCTCTTCGAATAATCACAAAAAGAACAGTAGCATGAAGCCATGAACAATAGAAACTTTGACTCACTTTAAAAACCAGCAACCTGTTACACTTGTCATAGGCATTTTCAAGTTGCGACTAATTCCATTTGACATCTGTTTTAATCTTTTTCTTAGTTTAGCATTTCTCTTTACATTTTATAACAGTTTGAAAGAAAAGTTGATACAACAGTCCACCATACCGAATAGAGAGGCCTAAACAGAGTCCAAAAAGTAAGTAAAAGCTTATGATAGATCCAAAGTGAAAAAAACGCAGAACTAAATTGGAAGAAAAAGAAATTGAACTGATTACACCTGGTTTGGTTGCGTGGTAACAAACATAAAACAGAAAAAATTGAACTGATGTAGCACGAAAGTCTAAGTAAAAGCACCAAAATCAGACCTTTAGACAACTTTACTATTCATTGACAGTTCCTGAGTTTTGTAATGTATGGTACATCTGTTAATTGCTAATGCTTTTCTTCATACACGACGAGGATATTGTGTTGAACGGAAGATCCTTTTGATGCAGGTCTCGCGTTTGATTGAGATGCAGACACCTTTGTACGTTGAAGCAGTTCAGCATGTCCATCCCTATTTTGATTCTTTGCACAATGAGTCTGAAAACTATAGTGTCAATTAAGAGCAATGGCCTGTGTAATTAGGTTTATATAAGATCTTTGTCGAAAATTCTTTTCCACCCTTCCAATTGTCTTGCTTTTAGTCTCTTTTGGGAAAGACAGGTTCGATAGTAAATAAAAGGAAGTGAACAGCGGGACAAACATACGCTAGTCCTGTAAGTTTTCTCATGTGGCATTTATAAACAAAATGTCACAAGAATCTTGTATCTGACTGCAAAGTTGATTTCTTGGTTAGCTATATCAATAAGAGAGGAAATTTTTCTG</genome_strand>
        <mrna_strand>ATGTTAGTTCAGAAGGTGCTCCATCTGGCATTACTACCATGCTATCTGGTCAAGAGGAAATGTTTGCATTTCGACGAGCT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTCGCGTTTGATTGAGATGCAGACACCTTTGTACGTTGAAGCAGTTCAGCATGTCCATCCCTATTTTGATTCTTTGCACAATGAGTCTGAAAACTATAGTGTCAATTAAGAGCAATGGCCTGTGTAATTAGGTTTATATAAGATCTTTGTCGAAAATTCTTTTCCACCCTTCCAATTGTCTTGCTTTTAGTCTCTTTTGGGAAAGACAGGTTCGATAGTAAATAAAAGGAAGTGAACAGCGGGACAAACATACGCTAGTCCTGTAAGTTTTCTCATGTGGCATTTATAAACAAAATGTCACAAGAATCTTGTATCTGACTGCAAAGTTGATTTCTTGGTTAGCTATATCAATAAGAGAGGAAATTTTTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0010E05-aP6kq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U315564" ref_strand="+" ref_description="SGN-U315564        Tomato 200607 #1 [11 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein, contains TIGRFAM TIGR00285: conserved hypothetical protein TIGR00285 | chr1:10223252-10224713 REVERSE | Aliases: F28N24.7, F28N24_7(evalue: 5e-43, score=171) genbank/nr: gi|51090885|dbj|BAD35458.1| unknown protein [Oryza sativa (japonica cultivar-group)] (evalue: 2e-41, score=172)">
      <seq>gaggctgattagggttttcctgaagaagaagaagaagaaatcaacaaattaatggaaggaatcacagagggagtgaacaagatgagtgtctcagagacacaaaagaagaacagaatccaagtttctaacactaagaaatcactcttcttttatgttaatctctcaaagaggtatatgcaacagtacaatgaagtggaactttctgctcttgggatggctatttccacagtggttaccattgctgaaattctgaagaacaatggatttgctgttgagaagaagatcaggacactcactgtggacatgagggacgaaccaggagcccgaccaataccaaaagcaaagattgaaatagtgctgggcaagactgagaagtttgatgagttaatggctgcagaagccgagcaaaacggggacaatgaggagcagcagaactgattatttccaaatctgttctcttcctgactattgaagttattccaatctatactgcattcagctgttgggttctctatggcctttaatttgatcttttggaaagtcaaaaaaaaaaaaaaagcagcatggtttactttaaaattcattatttgttggatgtgtttgcctcttgtttacttgtttatctaaggtgttgttagatgtaaacatcttgctgctatcttcactgtaagtgatgtggtcttaatttacgtctggtagttttatcatttaacaactggatatgaaggttgaggattctgccataacctaattaactgatcattatcgtgcagcgccattgaccaattagtactgtcacagttgccccatgtaattacattgtaccatctctcctctctagactacatttgtgggattagagtgcgtatgctttctgtggctaacgaaaacttaaaaaggttatctttaaggaacatactaaaattctcttacaaaaatgatatgttcatcaacttttgcatttaggatcacacatctctaaatatcggtgatgtattgagttgagcttaatttattcacacacatatggcagtacttaaaagggatcgtttagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0010E05-aP6kq/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0010E05.1" temp_strand="-" temp_description="C06HBa0010E05.1  AC219203.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0010E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="45982" stop="41545"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45682" g_stop="45515" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="168" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45514" i_stop="44227" i_length="1288">
            <donor d_prob="0.689" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44226" g_stop="44178" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="217" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44177" i_stop="43508" i_length="670">
            <donor d_prob="0.792" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43507" g_stop="43445" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="280" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43444" i_stop="43364" i_length="81">
            <donor d_prob="0.663" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43363" g_stop="43299" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="345" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="43298" i_stop="42554" i_length="745">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="42553" g_stop="41845" g_length="709"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="1055" r_length="710" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0010E05.1" gen_strand="-" ref_id="SGN-U315564" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>1054</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0010E05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U315564" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45682" e_stop="45515"/>
          <exon e_start="44226" e_stop="44178"/>
          <exon e_start="43507" e_stop="43445"/>
          <exon e_start="43363" e_stop="43299"/>
          <exon e_start="42553" e_stop="41845"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGCTGATTAGGGTTTTCCTGAAGAAGAAGAAGAAGAAATCAACAAATTAATGGAAGGAATCACAGAGGGAGTGAACAAGATGAGTGTCTCAGAGACACAAAAGAAGAACAGAATCCAAGTTTCTAACACTAAGAAATCACTCTTCTTTTATGTTAATCTCTCAAAGGTGCTTTTTTTAAATTCATTTAAATTTGTATATACATTGAAATCATAAGGAGTTTTTACACTATTACTGTATTTTATGCTATTATTTAATTTGCTTACTTGTTTTTCCATGTTATAAAGCCATACATTGTAGTCTGTGTATCCGTTGGCGAAGTTTGTGGAATTTTATTTTGGGTAATTGAACGTAGTTTAAGAATGATTAAAATTTTTTAGTCTGTAGATGTTTTTATGAAACAGCTAGATTTGCAAATATCTGGTATCAGAAGCAATTGTTTCAATTTGATGGTTATTGGGTTTGTGGTTAAAGCATATATGCTTGCCGATCGATGATGTGATACTCTGGTTAGGGTTGTCTTTTTCTTCCGGATAATGTACTCTGGTTAGGGTTGTTTGCATTGTAAAATGAGATTTGGTTATGGTTGTTGAGTTGTTTGTTGATGAGTTATGTGATAAAAGGTAAATTGAAGACTTGGAATTTGCATACTGTTTCAGTCATTGCTTCTCTCTCCTTATATTGTTTTTTATAAATCTGAAAGATATTTTACCTTTGAGGGAGCGGAAGCAATTACTTACATTGTCAAATGATATTGCTCATAGTGGGAGGCCTGCAAAATGCTAATAGGTAATGCACAATAACCAGGGTCTTTGTTAAAAAAAAACCAAAAAAAACCAGGGTCTTTGTTAATTCGATGTGTCTGATTGCTTATATTGGCGGAGGTTTAGTTTCCTGGGTTTTATCAAATTTTTTCCTGGGTTTAATTATAATAAGAGTTAATTTGATTGAAGAAAAATTGCTTATCTTATTACAATAATTAGTTGATGAGTTGGGTGACTAAAGAAAAATTTCTCTCTGTAATATGGAGAGCTTTTTCTTTTGAGAAGCATAAGAAAAGAATGTGGTTCAAGTTCTAGATGTTTGCTGTAGCAGTTGAGTTCACAAAATCTAGAGCAATTGTAATGGAAGAGATGTGAGTATGTGTAGGATCCGGATTTAATATTCAAACCTACAATTGAGGCATTTCATTAGTATTAATCATCAAAAGATACTTTATGTGTATTTGAAGAATTTCACCCCATACAGTGACAATTAGAGGGTTAACACAGGACTTGAAATATTTAGTTTGAATCTGTTTCCAAATGCAAGTGAGCTCATAACATGCATTAGAAAATCTTGAAAAATGTTAGCTATATGACTATCTATATTAATTTTTCCTGGTCTTACACCAGATCTATAATTGTTGCTATTGGTCTGAGTTAGTATCCTGAGATATTTGGTATGTTTGTTGCAGAGGTATATGCAACAGTACAATGAAGTGGAACTTTCTGCTCTTGGGATGGGTAAATCTTCTTGACCCTCAAATTTGAGTGCTAGTTTGTAGTTTCCCTTTGCTTATAATTAATGTCATATGAGTCTTCTACACTAATTGTGATTATGCTATCTTTTACATCAAGAATATATGGTGTTACAACTTGGCTGTGGAGGCATTATCACTTCATTTTCCCAATTGATTTTTTCTTGATGATTGGTGAATTTCAATCTTGGCAATGTGTGATGCTGTTTGCCATCTCAAGAATGCCTTGTTTAGTATTGCAGCTTCTTGTGTATGAGAAGAGTAAAATACACAGTGTTGCACACTTTACCAGGGATGTGATATCTTTTTGAACAATTTTGAACCAACTTCTGGCATAAAAAGGATCATGGTGTTCAAACATAGAAAGTAGTTTAGTGTATCTGAGATGAATTCTGATTGATCACAACCTTATTCCTGTGGCTTCCCCAGGGATCTTTTACATAAAAGCAGAACGTGCTCGATAATATGTTTGATGTGGCTCCTCATGCTTGCTGGTAAACTTTATTAAGTAAAAGAAATGCAGAGTGGCAGTACAGTTCAGTTTGATGTTTTTTGTGGACTCAGCCTTTTGGTGTTATGTTGAAAATTCATTAATAATTGAATTGTCTTGCTGTTTAGTTTCTAAAGGATTAACAATCTTTTCCATATGTTTACAGCTATTTCCACAGTGGTTACCATTGCTGAAATTCTGAAGAACAATGGATTTGCTGTTGAGAAGAGTGAGGCTTCTCCTATTCCACTCCCATCCCCCATCTCTTTTATAATCTTTGTCATCTAACTTTGAGGGTTACTTGCTGCAGAGATCAGGACACTCACTGTGGACATGAGGGACGAACCAGGAGCCCGACCAATACCAAAAGCAAAGGTAAATTCCAGAAGCATTATAAGTTGGTTGAGTTGGTCAATTGATGCATTAGTCTGCTTCATTTTTGGTGGTTTCTGAGTAATGGAACTCATGTTATAGAGGTTTTTATGGTAAATGTTAGCTTGGGACTCAAGATTGTTTCCGAAGAATAGTAGCATTGACCTTTGTTAAAGTAAGGTGTTCAAGAGGTAGTTGATGTTGTGTACTCATTTTGCTCTGTTTGAATTTGGATTTGTGCAGAACTTTACAAAAGCTGTAGAATAGATGGTAGGGTTAGTGATCGTTTACATTCTTGCTCACCAAAATGTGTCTTGTCCCATGTGATTATCTTAGACCTGATTGCAAGTTAGTTTACACTCCCATGCCTGTTGAAGCTACATCCCCTCTTAAATGCATTTTCTTGTGGTTTTGCCCATTGTTGTTTTCCTGTTTTGGAAAGCCGTAGAATGAAATAAATCATTTTCCTTTGGCAACAGCAGAGATGGAAATAATGAATCTGGCCAGTATTATGTTATGGCTATATAGATGCGGGTTTTACAGCTTTCGTGTTCCTCTTCCACTTTATACTCTTCAAACCAATGTTGAATTCATGTGAGCTAGTGGGTGTTGAATGTGGTTCGTAATCCATCTTTTTTTTAAAAAAAAATCCTTCTCCGAACAATGACCCTCACCTAATCTGTGGTAGTGTCTTTTTTATAATCGAACCAAGGGTTTTTGTCTTATGTATCATCTTTGCTTGATGCAGATTGAAATAGTGCTGGGCAAGACTGAGAAGTTTGATGAGTTAATGGCTGCAGAAGCCGAGCAAAACGGGGACAATGAGGAGCAGCAGAACTGATTATTTCCAAATCTGTTCTCTTCCTGACTATTGAAGTTATTCCAATCTATACTGCATTCAGCTGTTGGGTTCTCTATGGCCTTTAATTTGATCTTTTGGAAAGTC-AAAAAAAAAAAAAAGCAGCATGGTTTACTTTAAAATTCATTATTTGTTGGATGTGTTTGCCTCTTGTTTACTTGTTTATCTAAGGTGTTGTTAGATGTAAACATCTTGCTGCTATCTTCACTGTAAGTGATGTGGTCTTAATTTACGTCTGGTAGTTTTATCATTTAACAACTGGATATGAAGGTTGAGGATTCTGCCATAACCTAATTAACTGATCATTATCGTGCAGCGCCATTGACCAATTAGTACTGTCACAGTTGCCCCATGTAATTACATTGTACCATCTCTCCTCTCTAGACTACATTTGTGGGATTAGAGTGCGTATGCTTTCTGTGGCTAACGAAAACTTAAAAAGGTTATCTTTAAGGAACATACTAAAATTCTCTTACAAAAATGATATGTTCATCAACTTTTGCATTTAGGATCACACATCTCTAAATATCGGTGATGTATTGAGTTGAGCTTAATTTATTCACACACATATGGCAGTACTTAAAAGGGATCGTTTAGT</genome_strand>
        <mrna_strand>GAGGCTGATTAGGGTTTTCCTGAAGAAGAAGAAGAAGAAATCAACAAATTAATGGAAGGAATCACAGAGGGAGTGAACAAGATGAGTGTCTCAGAGACACAAAAGAAGAACAGAATCCAAGTTTCTAACACTAAGAAATCACTCTTCTTTTATGTTAATCTCTCAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGTATATGCAACAGTACAATGAAGTGGAACTTTCTGCTCTTGGGATGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATTTCCACAGTGGTTACCATTGCTGAAATTCTGAAGAACAATGGATTTGCTGTTGAGAAGA.................................................................................AGATCAGGACACTCACTGTGGACATGAGGGACGAACCAGGAGCCCGACCAATACCAAAAGCAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGAAATAGTGCTGGGCAAGACTGAGAAGTTTGATGAGTTAATGGCTGCAGAAGCCGAGCAAAACGGGGACAATGAGGAGCAGCAGAACTGATTATTTCCAAATCTGTTCTCTTCCTGACTATTGAAGTTATTCCAATCTATACTGCATTCAGCTGTTGGGTTCTCTATGGCCTTTAATTTGATCTTTTGGAAAGTCAAAAAAAAAAAAAAAGCAGCATGGTTTACTTTAAAATTCATTATTTGTTGGATGTGTTTGCCTCTTGTTTACTTGTTTATCTAAGGTGTTGTTAGATGTAAACATCTTGCTGCTATCTTCACTGTAAGTGATGTGGTCTTAATTTACGTCTGGTAGTTTTATCATTTAACAACTGGATATGAAGGTTGAGGATTCTGCCATAACCTAATTAACTGATCATTATCGTGCAGCGCCATTGACCAATTAGTACTGTCACAGTTGCCCCATGTAATTACATTGTACCATCTCTCCTCTCTAGACTACATTTGTGGGATTAGAGTGCGTATGCTTTCTGTGGCTAACGAAAACTTAAAAAGGTTATCTTTAAGGAACATACTAAAATTCTCTTACAAAAATGATATGTTCATCAACTTTTGCATTTAGGATCACACATCTCTAAATATCGGTGATGTATTGAGTTGAGCTTAATTTATTCACACACATATGGCAGTACTTAAAAGGGATCGTTTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0010E05-aP6kq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335932" ref_strand="+" ref_description="SGN-U335932        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|2190718|gb|AAB64397.1| beta-galactosidase [unidentified cloning vector](evalue: 3e-14, score=80.1)">
      <seq>cccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattataggcccagtagtcaaacgtggaaatgtacctatgtgcaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcttgaccttgatcagataaaccgctaagataagccagaacctgattgatcatctctggggtaggttggggtggcatttcctcattttgcacttgttcagtttccccatcctccccttctcttattacttcctcagtcggtggaggagtcaccgccctagtaccagatgggctcggttctcgttctcttcctctagatgacgtcctcccacgacctctaccacggccccttgccgctgttctcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0010E05-aP6kq/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0010E05.1" temp_strand="-" temp_description="C06HBa0010E05.1  AC219203.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0010E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="59780" stop="58748"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59480" g_stop="59048" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="433" r_length="433" r_score="0.905"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0010E05.1" gen_strand="-" ref_id="SGN-U335932" ref_strand="+">
        <total_alignment_score>0.905</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0010E05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U335932" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59480" e_stop="59048"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGTTGATCATTTGTCATTATAGGCCCAGTAGTCAGACGTGGAAACGTGCCTATATCTAATGAGGCATCCATACGAGGAGCCATAGTGGCTGCATGTTGTACCTCTGAAACCGGAGGTGTTGGTGCAGAAAACACTGGAGGTGCCTGACCTTGATCAGACAACCCACTGAGATAGGCGAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCAATCCCTCATTCTGCACTTGTTCATTTTCCCCATCCTCCCCTTCTCTTATTACTTCCTCAGTCGGTGGAGGAGTCACTGCCGTAGTATCAGATGGGCTAGATGCTCGTCCTCTTCCCCTAGAGGACGTCCTCCCACGACCTCTACCACGCCCTCTTGCCGCTGCTCTTC</genome_strand>
        <mrna_strand>CCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAAACGTGGAAATGTACCTATGTGCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCTTGACCTTGATCAGATAAACCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTTCCTCATTTTGCACTTGTTCAGTTTCCCCATCCTCCCCTTCTCTTATTACTTCCTCAGTCGGTGGAGGAGTCACCGCCCTAGTACCAGATGGGCTCGGTTCTCGTTCTCTTCCTCTAGATGACGTCCTCCCACGACCTCTACCACGGCCCCTTGCCGCTGTTCTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0010E05-aP6kq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335931" ref_strand="+" ref_description="SGN-U335931        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|47824972|gb|AAT38745.1| putative polyprotein, 3'-partial [Solanum demissum] (evalue: 1e-33, score=146)">
      <seq>acctagcccatctggtactaaggcggtgacacctccaccaactgaggaagtggtaagagagggtgaggatggggagaatgaacaagtgcagaatgaggaattgccaccccaacctacccaagagatgatcaatcaggttcttgcttaccttagcgggttatctgatcaaggccaagcacctccagtgttttctgcactagcacctcaggctccggaggtacaacatgcgcctactgtgactccccgcatcgatacctcattggaaataggaacgtttccccgtctgactacagggcctataatgacaaatgatcagcatgaactttttagtaagttcttgaaattgaaacctcaagtctacaagggtgttgaatctgaggatgcctacgattttctggttgactgtcatgagctactacacaagatgggtatagtagaacggtttggtgttgagtttgtgacttatcagtttcaagggaacgccaaaatgtggtggcggtcacatgttgagtgtcaaccaacagaggcaccacgtatgacttgggcatcattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0010E05-aP6kq/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0010E05.1" temp_strand="+" temp_description="C06HBa0010E05.1  AC219203.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0010E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="58815" stop="59968"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59115" g_stop="59668" g_length="554"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="554" r_length="554" r_score="0.901"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0010E05.1" gen_strand="+" ref_id="SGN-U335931" ref_strand="+">
        <total_alignment_score>0.901</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0010E05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U335931" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59115" e_stop="59668"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTAGCCCATCTGATACTACGGCAGTGACTCCTCCACCGACTGAGGAAGTAATAAGAGAAGGGGAGGATGGGGAAAATGAACAAGTGCAGAATGAGGGATTGCCACCCCAACCTACCCCAGAGATGATCAATCAGGTTCTCGCCTATCTCAGTGGGTTGTCTGATCAAGGTCAGGCACCTCCAGTGTTTTCTGCACCAACACCTCCGGTTTCAGAGGTACAACATGCAGCCACTATGGCTCCTCGTATGGATGCCTCATTAGATATAGGCACGTTTCCACGTCTGACTACTGGGCCTATAATGACAAATGATCAACATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTACTGAATTTGAGGATGCTTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATTGTAGAACGGTTTGGTGTTGAGTTCGTGAGTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACGAACAGAGGCACCACCTATGACTTGGGCGTCATTCT</genome_strand>
        <mrna_strand>ACCTAGCCCATCTGGTACTAAGGCGGTGACACCTCCACCAACTGAGGAAGTGGTAAGAGAGGGTGAGGATGGGGAGAATGAACAAGTGCAGAATGAGGAATTGCCACCCCAACCTACCCAAGAGATGATCAATCAGGTTCTTGCTTACCTTAGCGGGTTATCTGATCAAGGCCAAGCACCTCCAGTGTTTTCTGCACTAGCACCTCAGGCTCCGGAGGTACAACATGCGCCTACTGTGACTCCCCGCATCGATACCTCATTGGAAATAGGAACGTTTCCCCGTCTGACTACAGGGCCTATAATGACAAATGATCAGCATGAACTTTTTAGTAAGTTCTTGAAATTGAAACCTCAAGTCTACAAGGGTGTTGAATCTGAGGATGCCTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACGTATGACTTGGGCATCATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0010E05-aP6kq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U317064" ref_strand="+" ref_description="SGN-U317064        Tomato 200607 #1 [6 ESTs aligned] genbank/nr: gi|47824972|gb|AAT38745.1| putative polyprotein, 3'-partial [Solanum demissum] (evalue: 5e-64, score=248)">
      <seq>acgaataggcatatcaagaaattcacaatgtaaatttagaccattagcaaatgaggaagatacataagaaaacgtggatccaggatcaaacaatacggaagccatgcaatcacaaactagaagattacctgtgatgacagcatcagatgcctccgcttcagaccgcccagggaaagcgtaacaatgggccctatcgtttgtctgcccattgcccctaccatgttgtgatgtagtggccccagtttgcccattacctctgccgttttggtgaccaccattacctcgaccaccacgtcctccagaataacggcctctaccatgaccacctctacctctagctattgggggtctataacttggtccgggacaatttatcctaatatgtccaatctccccacatccataacattctctggagtcactcataggccccttggagaagtgttgaccggtctgaggtggacccccaactacagtctgtagtgaagactgaatgggtcgagctgagtaacctccggaaccttgtcctctagagtaagaacccttaaactcacctccctttcgaaacctctttgatgtcgatgtcgtggtgaagtcgtctggcttcactccttccacttctatcacaaagtctaccacttcttggaaggattttgccgttgccgctacctgtaaggacgaaatccgcaattctgacctcaaccccttcacaaaccggcgaatccgctcttgaggactgaaacagagttgagtggcatatctggatagtgcacgaaacttagcctcataagcattaactgacaccctaccttgctctaggctcaagaactcatcccttttcttatccctcaaagtccgggggatatacttctccataaacaaactatagaatgaggcccaagtcataggtgatgcctctattggttgacactcgatatgtgaccgccaccacatttgggcgttcccttgaaactgataagtcacaaactccacaccaaaccgttctactatacccatcttgtgtagtagctcgtgacagtcaaccagaaaatcataagcatcctccgattcagcacccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattatagggacagtagtcaaacgtggaaatgtgcctatgtccaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcttgaccttgatcagataacccgctaagataagccagaacctgattgatcatctctggggtaggttggggtggcatttcctcattttgcacttgttcagtttccccatccctccctttctctattacttcctcagtcagtggaagagtcactgccctagtatcagatgggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0010E05-aP6kq/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0010E05.1" temp_strand="-" temp_description="C06HBa0010E05.1  AC219203.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0010E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="60855" stop="58819"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60555" g_stop="59119" g_length="1437"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1437" r_length="1437" r_score="0.916"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0010E05.1" gen_strand="-" ref_id="SGN-U317064" ref_strand="+">
        <total_alignment_score>0.916</total_alignment_score>
        <cumulative_length_of_scored_exons>1437</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0010E05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U317064" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60555" e_stop="59119"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATACAATCACAAACCAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGAGCCCTTTCGTTTGTTTGTCCGTTGCCCCTACCATGTTGTGATGTAGTGTCTCCAGCTTGCCCATCACCTCGACCATTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACTTCTACCTCTAGCCATTGGGGGCCTATAACTCTGTTTGGGACAATTCCTCCTAATATGTCCAGTCTCCCCACATCCATAACACTCTCTAGAGTCAAGCATAGGCCTCTCAGAGAAGTGTTGACCGGTCTGAGGTGGACCCCCAACTATAGTCTGTAGCGAAGACTGAATTGGTCGAACTGAGTAACCTCCGGAACCCTGTCCTCTAGAGTAAGAACCATTAAACTCACCTCCCTTTCGAAACCTCTTTGATGTCGATGCCATGGTGAATTCATCTGGCTTCTATCCTTCCACCTCTACCACGAAATCTACCACTTCTTGGAAGGATTTTGCCGTAGCCGCTACCTGTAAGGCTGAAATCCGCAACTCTGACCTCAACCCCTTCATAAAACGACGAATCCGCTCTTGTGGACTGAAACAAAGTTGGGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATATGCATTGACCGACATCTTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCTATCCCTCAATGTCCGAGGGATATACTTCTCCATAAACAAGCTAGAGAATGACGCCCAAGTCATAGGTGGTGCCTCTGTTCGTTGACACTCAACATGTGACCGCCACCACATTTTGGCGTTCCCTTGAAACTGATAACTCACGAACTCAACACCAAACCGTTCTACAATACCCATCTTGTGTAGTAGCTCATGACAGTCAACCAGAAAATCGTAAGCATCCTCAAATTCAGTACCCTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGTTGATCATTTGTCATTATAGGCCCAGTAGTCAGACGTGGAAACGTGCCTATATCTAATGAGGCATCCATACGAGGAGCCATAGTGGCTGCATGTTGTACCTCTGAAACCGGAGGTGTTGGTGCAGAAAACACTGGAGGTGCCTGACCTTGATCAGACAACCCACTGAGATAGGCGAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCAATCCCTCATTCTGCACTTGTTCATTTTCCCCAT-CCTCCCCTTCTCTTATTACTTCCTCAGTCGGTGGAGGAGTCACTGCCGTAGTATCAGATGGGCT</genome_strand>
        <mrna_strand>ACGAATAGGCATATCAAGAAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAACGTGGATCCAGGATCAAACAATACGGAAGCCATGCAATCACAAACTAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTTGTCTGCCCATTGCCCCTACCATGTTGTGATGTAGTGGCCCCAGTTTGCCCATTACCTCTGCCGTTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTGGTCCGGGACAATTTATCCTAATATGTCCAATCTCCCCACATCCATAACATTCTCTGGAGTCACTCATAGGCCCCTTGGAGAAGTGTTGACCGGTCTGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATGGGTCGAGCTGAGTAACCTCCGGAACCTTGTCCTCTAGAGTAAGAACCCTTAAACTCACCTCCCTTTCGAAACCTCTTTGATGTCGATGTCGTGGTGAAGTCGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACTTCTTGGAAGGATTTTGCCGTTGCCGCTACCTGTAAGGACGAAATCCGCAATTCTGACCTCAACCCCTTCACAAACCGGCGAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACTGACACCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCTTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAACTATAGAATGAGGCCCAAGTCATAGGTGATGCCTCTATTGGTTGACACTCGATATGTGACCGCCACCACATTTGGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGGACAGTAGTCAAACGTGGAAATGTGCCTATGTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCTTGACCTTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTTCCTCATTTTGCACTTGTTCAGTTTCCCCATCCCTCCCTTTCTC-TATTACTTCCTCAGTCAGTGGAAGAGTCACTGCCCTAGTATCAGATGGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0010E05-aP6kq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335938" ref_strand="-" ref_description="SGN-U335938        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|49533772|gb|AAT66771.1| putative polyprotein [Solanum demissum] (evalue: 4e-59, score=231)">
      <seq>gcaaggtaggatgtaggtcaatgcatatgaggctaagtttcgtgcactatccagatatgccactcaactttgtttcagtccacaagagaggattcgtcgttttgtgaaagggttgaggtcagagttgcggatttcagcgttacaggtagcggctacggcaaaatccttgcaagaaatggttgacttcgatgtaattctgggtatgacttggctttctccaaattttgcaatcttggattgtaatgctaaaaccgtgacgttagccaagcctgggacagatctgttagtgtaggagggtgactacacttccaatccggtgcgtatcatctcctttcttcgtgctaagaaaatggttagtaaagggtgtttagctttcttggcacatctcaaggataacactacccaagtaccttcgattgactcagtttcagtagttcgtgagtttatggatgtgttccctgcagatcatcctggtatgccaccggatagggatattgacttctgtattgatctcgaaccgggcacacgccccatttttatacccccttatagaatggctcccgcagagttaagagagttaaaggcacaacttcaagagttattgaacaaaggcttcattagaccaagtgcatctccttggggtgctccggttttgttgtaaagatcggcagtttttgaatgtgcatagactaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0010E05-aP6kq/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0010E05.1" temp_strand="+" temp_description="C06HBa0010E05.1  AC219203.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0010E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="59442" stop="61449"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59742" g_stop="59914" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="173" r_length="173" r_score="0.954"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59915" i_stop="60658" i_length="744">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60659" g_stop="61185" g_length="527"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="694" r_length="521" r_score="0.907"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0010E05.1" gen_strand="+" ref_id="SGN-U335938" ref_strand="-">
        <total_alignment_score>0.919</total_alignment_score>
        <cumulative_length_of_scored_exons>700</cumulative_length_of_scored_exons>
        <coverage percentage="1.009" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0010E05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U335938" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="59742" e_stop="59914"/>
          <exon e_start="60659" e_stop="61185"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGGTAAGATGTCGGTCAATGCATATGAGGCTAAGTTTCGTGCACTATCCAGATATGCCACCCAACTTTGTTTCAGTCCACAAGAGCGGATTCGTCGTTTTATGAAGGGGTTGAGGTCAGAGTTGCGGATTTCAGCCTTACAGGTAGCGGCTACGGCAAAATCCTTCCAAGAAGTGGTAGATTTCGTGGTAGAGGTGGAAGGATAGAAGCCAGATGAATTCACCATGGCATCGACATCAAAGAGGTTTCGAAAGGGAGGTGAGTTTAATGGTTCTTACTCTAGAGGACAGGGTTCCGGAGGTTACTCAGTTCGACCAATTCAGTCTTCGCTACAGACTATAGTTGGGGGTCCACCTCAGACCGGTCAACACTTCTCTGAGAGGCCTATGCTTGACTCTAGAGAGTGTTATGGATGTGGGGAGACTGGACATATTAGGAGGAATTGTCCCAAACAGAGTTATAGGCCCCCAATGGCTAGAGGTAGAAGTGGTCATGGTAGAGGCCGTTATTCTGGAGGACGTGGTGGTCGAGGTAATGGTGGTCACCAAAATGGTCGAGGTGATGGGCAAGCTGGAGACACTACATCACAACATGGTAGGGGCAACGGACAAACAAACGAAAGGGCTCATTGTTACGCTTTCCCTGGGCGGTCTGAAGCGGAGGCATCTGATGCTGTCATCACAGGTAATCTTCTGGTTTGTGATTGTATGGCTTCTGTATTGTTTGATCCTGGATCCACATTTTCTTATGTATCTTCCTCATTTGCTAATGGTCTAAATTTACATTGTGAATTACTTGATATGCCTATTCATGTTTCTACTCCGGTGGGTGAGTCTGTGGTAGTTGAAAAGGTATATAGGTCTTGTTTGGTGAACTTTGTGGGGAGCAACACTTATGTAGATTTGGTTATCTTAGAAATGGATGATTTTGATGTAATTCTGGGTATGACTTGGCTTTCTCCGCAATTTGCGATCTT-GATTGTAATGCTAAAACGGTGACGTTAGCCAAGCCTGGGACAGATCCGTTAGTGTGGAAGGGTGACTACACTTCCAATCCGGTGCGTATCATCTCCTTTCTTCGTGCTAAGAAACTGGTTAGTTAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATGACACTACCCAAGTACCTTCAATTGAGTCGGTTTCGGTGGTCCGTGAGTTTCTGAATGTGTTCCCTGCAGATCTTCCTGGTATGCCACCAGATAGAGATATTGACTTCTGTATTGATCTTGAACCGGGTACTCGCCCCATTTCTATACCCCCTTATAGAATGGCTCCCGCGGAGTTAAGAGAGTTAAAAGCACAACTTCAAGAGTTGTTGAGCAAAGGCTTCATTAGATCAAGTGCATCTCCTTGGGGTGCTCCGGTTTTGTTTGTAAAGAAGAAGGATGGGAGTTTTCGGATGTGCATAGACTACC</genome_strand>
        <mrna_strand>GCAAGGTAGGATGTAGGTCAATGCATATGAGGCTAAGTTTCGTGCACTATCCAGATATGCCACTCAACTTTGTTTCAGTCCACAAGAGAGGATTCGTCGTTTTGTGAAAGGGTTGAGGTCAGAGTTGCGGATTTCAGCGTTACAGGTAGCGGCTACGGCAAAATCCTTGCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGGTTGACTTCGATGTAATTCTGGGTATGACTTGGCTTTCTCCAAATTTTGCAATCTTGGATTGTAATGCTAAAACCGTGACGTTAGCCAAGCCTGGGACAGATCTGTTAGTGTAGGAGGGTGACTACACTTCCAATCCGGTGCGTATCATCTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATAACACTACCCAAGTACCTTCGATTGACTCAGTTTCAGTAGTTCGTGAGTTTATGGATGTGTTCCCTGCAGATCATCCTGGTATGCCACCGGATAGGGATATTGACTTCTGTATTGATCTCGAACCGGGCACACGCCCCATTTTTATACCCCCTTATAGAATGGCTCCCGCAGAGTTAAGAGAGTTAAAGGCACAACTTCAAGAGTTATTGAACAAAGGCTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGTTTTG-TTGT--A-AAG-A--TCGGCAGTTTTTGAATGTGCATAGACTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0010E05-aP6kq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335930" ref_strand="+" ref_description="SGN-U335930        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: hypothetical(evalue: 7e-35, score=150)">
      <seq>aaacacgaataggcatatcaagtaattcacaatgtaaagttagaccattagcaaatgaggaagatacataagaaaatgtggatccaggatcaaacaatacagaagccatgcaatcacaaaccaaaagattacctgtgatgacaacatcagattcctccgcttcagaccgcccagggaaagcgtaacaatgggccctatcattcttatgtctgttgcccctaccatgttgtgatgtagtggctccagtttgcccatcacctcggccgttttggtgaccaccatttcctcgaccgccacgtcctccagaataacggactctgccatgaccacctctacctctaacctttggaggtctgtaactctgttttggacaatatctcttaatatgtccaatctccccacacccatagcactctctgggttcatgcataagtctctcagagaagtgttgaccggtcgaaggtggacccccaactacagtctgtagtgaagactgaattggtcggactgagtaacttcccgaaccctgtcctctagtgtaagcaccattaaactcacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0010E05-aP6kq/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0010E05.1" temp_strand="-" temp_description="C06HBa0010E05.1  AC219203.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0010E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="60859" stop="59701"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60559" g_stop="60001" g_length="559"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="559" r_length="559" r_score="0.912"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0010E05.1" gen_strand="-" ref_id="SGN-U335930" ref_strand="+">
        <total_alignment_score>0.912</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0010E05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U335930" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60559" e_stop="60001"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACATGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATACAATCACAAACCAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGAGCCCTTTCGTTTGTTTGTCCGTTGCCCCTACCATGTTGTGATGTAGTGTCTCCAGCTTGCCCATCACCTCGACCATTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACTTCTACCTCTAGCCATTGGGGGCCTATAACTCTGTTTGGGACAATTCCTCCTAATATGTCCAGTCTCCCCACATCCATAACACTCTCTAGAGTCAAGCATAGGCCTCTCAGAGAAGTGTTGACCGGTCTGAGGTGGACCCCCAACTATAGTCTGTAGCGAAGACTGAATTGGTCGAACTGAGTAACCTCCGGAACCCTGTCCTCTAGAGTAAGAACCATTAAACTCACC</genome_strand>
        <mrna_strand>AAACACGAATAGGCATATCAAGTAATTCACAATGTAAAGTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAAAAGATTACCTGTGATGACAACATCAGATTCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCATTCTTATGTCTGTTGCCCCTACCATGTTGTGATGTAGTGGCTCCAGTTTGCCCATCACCTCGGCCGTTTTGGTGACCACCATTTCCTCGACCGCCACGTCCTCCAGAATAACGGACTCTGCCATGACCACCTCTACCTCTAACCTTTGGAGGTCTGTAACTCTGTTTTGGACAATATCTCTTAATATGTCCAATCTCCCCACACCCATAGCACTCTCTGGGTTCATGCATAAGTCTCTCAGAGAAGTGTTGACCGGTCGAAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGCACCATTAAACTCACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0010E05-aP6kq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U317065" ref_strand="+" ref_description="SGN-U317065        Tomato 200607 #1 [3 ESTs aligned] genbank/nr: gi|49533772|gb|AAT66771.1| putative polyprotein [Solanum demissum] (evalue: 3e-84, score=314)">
      <seq>cggaaactcccatccttcttcttcacaaacaaaatcggagcaccccaaggagatgcacttggtctaatgaaacctttgctcaacaactcttgaagttgggcctttaactctcttaactctacgggagccattctataagggggtatagaaatggggcgtgtgcccggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcagggaacacatccaaaaactcacagactataaaaaccgactcaatcgaaggtacttgggtagtgtcatccttgagatgtgccaagaaagctaaacaccctttactaaccattttcttagcacgaagaaaggagatgatgcacaccggattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaatgtcaccgttttagcattacaatccaagatcgcaaattgcggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaaatctacataagtgttgctccccacaaagttcaccaaacaagacctatataccttttcaactaccacagactcacccaccggagtagaaacacgaataggcatatcaagtaattcacaatgtaaatttagaccgttagcaaatgaggaagatacantagaaaacgtggatcccaggatcaacaatacagaagccatgcaatcacaatcgaaagattacctgtgatgacagcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0010E05-aP6kq/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0010E05.1" temp_strand="-" temp_description="C06HBa0010E05.1  AC219203.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0010E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="61468" stop="60112"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61168" g_stop="60412" g_length="757"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="757" r_length="757" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0010E05.1" gen_strand="-" ref_id="SGN-U317065" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>757</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0010E05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U317065" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61168" e_stop="60412"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAAACTCCCATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGATCTAATGAAGCCTTTGCTCAACAACTCTTGAAGTTGTGCTTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTACCCGGTTCAAGATCAATACAGAAGTCAATATCTCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATTCAGAAACTCACGGACCACCGAAACCGACTCAATTGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTAACTAACCAGTTTCTTAGCACGAAGAAAGGAGATGATACGCACCGGATTGGAAGTGTAGTCACCCTTCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAAT-CAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCATCCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACATGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGAT-CCAGGATCAAACAATACAGAAGCCATACAATCACAAACCAGAAGATTACCTGTGATGACAGCATC</genome_strand>
        <mrna_strand>CGGAAACTCCCATCCTTCTTCTTCACAAACAAAATCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAACCTTTGCTCAACAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCTACGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCCGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAAAAACTCACAGACTATAAAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATGCACACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAATGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCGTTAGCAAATGAGGAAGATACANTAGAAAACGTGGATCCCAGGATC-AACAATACAGAAGCCATGCAATCACAATCGA-AAGATTACCTGTGATGACAGCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0010E05-aP6kq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335937" ref_strand="+" ref_description="SGN-U335937        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: beta-galactosidase(evalue: 3e-30, score=135)">
      <seq>gatctgtcccaggcttggctaacgtcacagttttagcattacaatccaagattgcaaaatttggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaagtctacataagtattgctccccacaaaagtcaccagaccagacctatatactttttcaactatcacagactcacccaccggagtagaaacacgaataggcatgtcaagcaattcataatttaatttaagaccagtagcaaatgaggaagatacatatgaaaatgtggatccagggtcaaataatacaaaagccatgcaatcacaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0010E05-aP6kq/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0010E05.1" temp_strand="-" temp_description="C06HBa0010E05.1  AC219203.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0010E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="61065" stop="60140"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60765" g_stop="60436" g_length="330"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="0.903"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0010E05.1" gen_strand="-" ref_id="SGN-U335937" ref_strand="+">
        <total_alignment_score>0.903</total_alignment_score>
        <cumulative_length_of_scored_exons>330</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0010E05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U335937" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60765" e_stop="60436"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAAT-CAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCATCCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACATGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATACAATCACAAACCAG</genome_strand>
        <mrna_strand>GATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAGTCTACATAAGTATTGCTCCCCACAAAAGTCACCAGACCAGACCTATATACTTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCATAATTTAATTTAAGACCAGTAGCAAATGAGGAAGATACATATGAAAATGTGGATCCAGGGTCAAATAATACAAAAGCCATGCAATCACAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0010E05-aP6kq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335935" ref_strand="+" ref_description="SGN-U335935        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|49533772|gb|AAT66771.1| putative polyprotein [Solanum demissum] (evalue: 2e-78, score=295)">
      <seq>tcaatgcgaggaagaggatacttgttcttaatagttaccttgttcagttgtctgtagtctatgcacattctaaaacttccatccttcttcttcacaaataaaactggagcaccccaaggagatgcacttggtctaatgaagaccttgctcaacaactcttgaagttgagcctttaactctcttaattcggcgggagccattctataagggggtatagaaatggggcgtgtgcctggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcaggaaacacgtccaaaaactcgcggactaccgaaaccgactcaattgagggtacttgagtagtgtcatccttgagatgtgccaagaaagctgaacaccctttactaaccattttcttagcacgaagaaaggatatgatacgcaccagattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaacgtcaccgttttagcattacaatccaagatcgcaaaatttggagaaagccaagtcatacccagaattacatcaatgtcacccatttctaaaaaaccaaatctacataagtgttgctccccacgaaattcnacaaaacagaactatgtaccttttcaactaccac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0010E05-aP6kq/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0010E05.1" temp_strand="-" temp_description="C06HBa0010E05.1  AC219203.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0010E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="61537" stop="60280"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61237" g_stop="60580" g_length="658"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="658" r_length="658" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0010E05.1" gen_strand="-" ref_id="SGN-U335935" ref_strand="+">
        <total_alignment_score>0.919</total_alignment_score>
        <cumulative_length_of_scored_exons>658</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0010E05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U335935" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61237" e_stop="60580"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATGCGAGGAAGAGGATACTTGTTCTTAATAGTTACCTTGTTCAATTGCCGGTAGTCTATGCACATCCGAAAACTCCCATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGATCTAATGAAGCCTTTGCTCAACAACTCTTGAAGTTGTGCTTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTACCCGGTTCAAGATCAATACAGAAGTCAATATCTCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATTCAGAAACTCACGGACCACCGAAACCGACTCAATTGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTAACTAACCAGTTTCTTAGCACGAAGAAAGGAGATGATACGCACCGGATTGGAAGTGTAGTCACCCTTCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAAT-CAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCATCCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCAC</genome_strand>
        <mrna_strand>TCAATGCGAGGAAGAGGATACTTGTTCTTAATAGTTACCTTGTTCAGTTGTCTGTAGTCTATGCACATTCTAAAACTTCCATCCTTCTTCTTCACAAATAAAACTGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGACCTTGCTCAACAACTCTTGAAGTTGAGCCTTTAACTCTCTTAATTCGGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCTGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGAAACACGTCCAAAAACTCGCGGACTACCGAAACCGACTCAATTGAGGGTACTTGAGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTGAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGATATGATACGCACCAGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAATGTCACCCATTTCTAA-AAAACCAAATCTACATAAGTGTTGCTCCCCACGAAATTCNACAAAACAGAACTATGTACCTTTTCAACTACCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0010E05-aP6kq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U326740" ref_strand="+" ref_description="SGN-U326740        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: ATMG00860.1 | Symbol: ORF158 | hypothetical protein | chrM:235916-236392 FORWARD | Aliases: ORF158 (evalue: 2e-15, score=79.3) genbank/nr: RNA-directed(evalue: 2e-101, score=370)">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatgcgaggaagaggatacttgttctttatggttaccttgttcaactgccggtagcctatgcacatccgaaaactccaatccttcttctttacaaacaaaaccggagcaccccaaggagatgcagttggtctaatgaagcctttgctcacaactctttgaagtggtcttttaactctcttaactctgcgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0010E05-aP6kq/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0010E05.1" temp_strand="-" temp_description="C06HBa0010E05.1  AC219203.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0010E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="62057" stop="60745"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61757" g_stop="61045" g_length="713"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="712" r_length="712" r_score="0.921"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0010E05.1" gen_strand="-" ref_id="SGN-U326740" ref_strand="+">
        <total_alignment_score>0.921</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0010E05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U326740" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61757" e_stop="61045"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCGTATTTCTGACACATTAGTAGGTCTTACCTAATTCTTTACTGTCTCAATCTTAGATGGATCCACCATCACTCCCTCCTTAGAGACCACGTGTCCCAAGAAGGACACTAAATCTAGCCAAAACTCACACTTGGAGAATTTGGCATAAAGCTTCTTCTTCCTCAATAACTCTAACACCATTCTCAAATGCTCCTCATGTTCCTTCTTACTCTTGCAGTATATCAATATATCATCAATAAATACGATCACAAAGAGATCCAGATATGGCTTGAAAATCCCGTTCATCAAACTCATGAACGCAGTAGGGGCATTCGTAAGACCAAAAGACATTACCACAAATTCATAATGCCCATATCTAGTTCGAAAAGCAGTCTTTGGCACATCCGTTGCCCATATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGAGGATACTTGTTCTTAATAGTTACCTTGTTCAATTGCCGGTAGTCTATGCACATCCGAAAACTCCCATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGATCTAATGAAGCCTTTGCTCAACAACTC-TTGAAGTTGTGCTTTTAACTCTCTTAACTCCGCGG</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGCCTATGCACATCCGAAAACTCCAATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCAGTTGGTCTAATGAAGCCTTTGCTC-ACAACTCTTTGAAGTGGT-CTTTTAACTCTCTTAACTCTGCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06HBa0010E05-aP6kq/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U345909" ref_strand="+" ref_description="SGN-U345909        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: beta-galactosidase(evalue: 1e-29, score=133)">
      <seq>ctacatctcctaccatacaatgcttcaaatggagccatatcaatgcttgattgatagctattattgtatgaaaactccgctaagggtaggaagctatcccaatgaccaccaaactctatcacacacgcacgaagcatattctccaacacttgaatcgttcgctcagactgaccatcgggagaactagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06HBa0010E05-aP6kq/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06HBa0010E05.1" temp_strand="-" temp_description="C06HBa0010E05.1  AC219203.1 htgs_phase:1 submitted_to_sgn_as:C06HBa0010E05 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="63538" stop="62761"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63238" g_stop="63062" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="0.910"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06HBa0010E05.1" gen_strand="-" ref_id="SGN-U345909" ref_strand="+">
        <total_alignment_score>0.910</total_alignment_score>
        <cumulative_length_of_scored_exons>177</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06HBa0010E05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U345909" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63238" e_stop="63062"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACATCTTCTCCCATATAGTGCCTCAAATGGGGCCATATCAATGCTTGAGTGATAGCTATTGTTGTAGGAGAACTCTGCTAAGGGTAAGAAGCTATCCCACTGACCACCAAATTCTATCACACATGCACGAAGCATATCCTCCAACACTTGAATCGTTCGCTCAGACTGACCATCG</genome_strand>
        <mrna_strand>CTACATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATGCTTGATTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAGGAAGCTATCCCAATGACCACCAAACTCTATCACACACGCACGAAGCATATTCTCCAACACTTGAATCGTTCGCTCAGACTGACCATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>13</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="30458" PGL_stop="32915"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="30458" e_stop="30615"/>
            <exon e_start="31886" e_stop="32022"/>
            <exon e_start="32115" e_stop="32251"/>
            <exon e_start="32569" e_stop="32711"/>
            <exon e_start="32892" e_stop="32915"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.946" e_score="1.000"/>
          <exon-intron don_prob="0.544" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.900" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.682" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="30458" e_stop="30615" e_length="158"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.946">
            <gDNA_intron_boundary i_start="30616" i_stop="31885" i_length="1270"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="31886" e_stop="32022" e_length="137"/>
          </exon>
          <intron i_serial="2" don_prob="0.544" acc_prob="0.997">
            <gDNA_intron_boundary i_start="32023" i_stop="32114" i_length="92"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="32115" e_stop="32251" e_length="137"/>
          </exon>
          <intron i_serial="3" don_prob="0.900" acc_prob="0.980">
            <gDNA_intron_boundary i_start="32252" i_stop="32568" i_length="317"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="32569" e_stop="32711" e_length="143"/>
          </exon>
          <intron i_serial="4" don_prob="0.982" acc_prob="0.682">
            <gDNA_intron_boundary i_start="32712" i_stop="32891" i_length="180"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="32892" e_stop="32915" e_length="24"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30458" stop="30615"/>
              <exon start="31886" stop="32022"/>
              <exon start="32115" stop="32251"/>
              <exon start="32569" stop="32711"/>
              <exon start="32892" stop="32915"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U331004" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACAACTACCGGCAAAAAGGGGTTGTGAAATGAGAAAACTTTCTGTTTTTCTTTCTATCGGATTCGCTCATAGATCCTCTAAATTCCGCAGCAGCAATAATCATCATAACGCTCTTCGTTTTTACAGCAATATTTCCCCTTCTCCCTCCAAGAATCATG : GACTTCTTGCACATTACAGGAGTCTTGTTGAACAGGGAAAGCTGCAGCATGATCCTTACCAAGAAAAAGTTGCTACTGAACTAGAAAATCTTCTTGGAAGGTTGGAGCAATATGAAAAGGACATGGAGGAATATCAT : GAAAAACTTGCACAATGGGAGGATAATAGGGAAAGTCGGAGGCGTAAGCTTCTTATGGAGGAAGCTGAGGCCAAACAACAAGGTGCATTTAAACCAATAAACAAATCTCGCAATATTTTCCAAAGATGGATGTCTCG : GAAACCTGAAGATGTGGAAGAAGGAGTCGGGAAATGGGTTTCATATCTCAATCGAGAGAAGAAGTTAGATTCACAAGTCGGTCGACGTCCTGCTGCTCCTCCAGCCCCCAAAGGACTATATCTATATGGCAATGTTGGGAGTG : GGAAGACAATGATTATGGATATGT</gDNA_template>
            <first_frame> T  T  T  G  K  K  G  L  *  N  E  K  T  F  C  F  S  F  Y  R  I  R  S  *  I  L  *  I  P  Q  Q  Q  *  S  S  *  R  S  S  F  L  Q  Q  Y  F  P  F  S  L  Q  E  S  W :   T  S  C  T  L  Q  E  S  C  *  T  G  K  A  A  A  *  S  L  P  R  K  S  C  Y  *  T  R  K  S  S  W  K  V  G  A  I  *  K  G  H  G  G  I  S   : *  K  T  C  T  M  G  G  *  *  G  K  S  E  A  *  A  S  Y  G  G  S  *  G  Q  T  T  R  C  I  *  T  N  K  Q  I  S  Q  Y  F  P  K  M  D  V  S  :  E  T  *  R  C  G  R  R  S  R  E  M  G  F  I  S  Q  S  R  E  E  V  R  F  T  S  R  S  T  S  C  C  S  S  S  P  Q  R  T  I  S  I  W  Q  C  W  E  W :   E  D  N  D  Y  G  Y   </first_frame>
            <second_frame>  Q  L  P  A  K  R  G  C  E  M  R  K  L  S  V  F  L  S  I  G  F  A  H  R  S  S  K  F  R  S  S  N  N  H  H  N  A  L  R  F  Y  S  N  I  S  P  S  P  S  K  N  H   : G  L  L  A  H  Y  R  S  L  V  E  Q  G  K  L  Q  H  D  P  Y  Q  E  K  V  A  T  E  L  E  N  L  L  G  R  L  E  Q  Y  E  K  D  M  E  E  Y  H  :  E  K  L  A  Q  W  E  D  N  R  E  S  R  R  R  K  L  L  M  E  E  A  E  A  K  Q  Q  G  A  F  K  P  I  N  K  S  R  N  I  F  Q  R  W  M  S  R :   K  P  E  D  V  E  E  G  V  G  K  W  V  S  Y  L  N  R  E  K  K  L  D  S  Q  V  G  R  R  P  A  A  P  P  A  P  K  G  L  Y  L  Y  G  N  V  G  S   : G  K  T  M  I  M  D  M  </second_frame>
            <third_frame>   N  Y  R  Q  K  G  V  V  K  *  E  N  F  L  F  F  F  L  S  D  S  L  I  D  P  L  N  S  A  A  A  I  I  I  I  T  L  F  V  F  T  A  I  F  P  L  L  P  P  R  I  M  :  D  F  L  H  I  T  G  V  L  L  N  R  E  S  C  S  M  I  L  T  K  K  K  L  L  L  N  *  K  I  F  L  E  G  W  S  N  M  K  R  T  W  R  N  I  M :   K  N  L  H  N  G  R  I  I  G  K  V  G  G  V  S  F  L  W  R  K  L  R  P  N  N  K  V  H  L  N  Q  *  T  N  L  A  I  F  S  K  D  G  C  L   : G  N  L  K  M  W  K  K  E  S  G  N  G  F  H  I  S  I  E  R  R  S  *  I  H  K  S  V  D  V  L  L  L  L  Q  P  P  K  D  Y  I  Y  M  A  M  L  G  V  :  G  R  Q  *  L  W  I  C </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0010E05.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="30459" stop="30615"/>
                    <exon start="31886" stop="32022"/>
                    <exon start="32115" stop="32251"/>
                    <exon start="32569" stop="32711"/>
                    <exon start="32892" stop="32914"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>597</number_coding_nucleotides>
                  <number_encoded_amino_acids>199</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QLPAKRGCEMRKLSVFLSIGFAHRSSKFRSSNNHHNALRFYSNISPSPSKNHGLLAHYRSLVEQGKLQHDPYQEKVATELENLLGRLEQYEKDMEEYHEKLAQWEDNRESRRRKLLMEEAEAKQQGAFKPINKSRNIFQRWMSRKPEDVEEGVGKWVSYLNREKKLDSQVGRRPAAPPAPKGLYLYGNVGSGKTMIMDM</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="39505" PGL_stop="41652"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="39505" e_stop="39584"/>
            <exon e_start="41280" e_stop="41652"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.529" e_score="0.975"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.975">
            <gDNA_exon_boundary e_start="39505" e_stop="39584" e_length="80"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.529">
            <gDNA_intron_boundary i_start="39585" i_stop="41279" i_length="1695"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="41280" e_stop="41652" e_length="373"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39505" stop="39584"/>
              <exon start="41280" stop="41652"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U342190" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATGTTAGTTCAGGAGGTGCTCCATCTGGCATTACTACCATGCTATCTGGTCAAGAGGAGATGTTTGCATTTCGACGAGCT : GTCTCGCGTTTGATTGAGATGCAGACACCTTTGTACGTTGAAGCAGTTCAGCATGTCCATCCCTATTTTGATTCTTTGCACAATGAGTCTGAAAACTATAGTGTCAATTAAGAGCAATGGCCTGTGTAATTAGGTTTATATAAGATCTTTGTCGAAAATTCTTTTCCACCCTTCCAATTGTCTTGCTTTTAGTCTCTTTTGGGAAAGACAGGTTCGATAGTAAATAAAAGGAAGTGAACAGCGGGACAAACATACGCTAGTCCTGTAAGTTTTCTCATGTGGCATTTATAAACAAAATGTCACAAGAATCTTGTATCTGACTGCAAAGTTGATTTCTTGGTTAGCTATATCAATAAGAGAGGAAATTTTTCTG</gDNA_template>
            <first_frame> M  L  V  Q  E  V  L  H  L  A  L  L  P  C  Y  L  V  K  R  R  C  L  H  F  D  E  L :   S  R  V  *  L  R  C  R  H  L  C  T  L  K  Q  F  S  M  S  I  P  I  L  I  L  C  T  M  S  L  K  T  I  V  S  I  K  S  N  G  L  C  N  *  V  Y  I  R  S  L  S  K  I  L  F  H  P  S  N  C  L  A  F  S  L  F  W  E  R  Q  V  R  *  *  I  K  G  S  E  Q  R  D  K  H  T  L  V  L  *  V  F  S  C  G  I  Y  K  Q  N  V  T  R  I  L  Y  L  T  A  K  L  I  S  W  L  A  I  S  I  R  E  E  I  F  L </first_frame>
            <second_frame>  C  *  F  R  R  C  S  I  W  H  Y  Y  H  A  I  W  S  R  G  D  V  C  I  S  T  S   : C  L  A  F  D  *  D  A  D  T  F  V  R  *  S  S  S  A  C  P  S  L  F  *  F  F  A  Q  *  V  *  K  L  *  C  Q  L  R  A  M  A  C  V  I  R  F  I  *  D  L  C  R  K  F  F  S  T  L  P  I  V  L  L  L  V  S  F  G  K  D  R  F  D  S  K  *  K  E  V  N  S  G  T  N  I  R  *  S  C  K  F  S  H  V  A  F  I  N  K  M  S  Q  E  S  C  I  *  L  Q  S  *  F  L  G  *  L  Y  Q  *  E  R  K  F  F   </second_frame>
            <third_frame>   V  S  S  G  G  A  P  S  G  I  T  T  M  L  S  G  Q  E  E  M  F  A  F  R  R  A  :  V  S  R  L  I  E  M  Q  T  P  L  Y  V  E  A  V  Q  H  V  H  P  Y  F  D  S  L  H  N  E  S  E  N  Y  S  V  N  *  E  Q  W  P  V  *  L  G  L  Y  K  I  F  V  E  N  S  F  P  P  F  Q  L  S  C  F  *  S  L  L  G  K  T  G  S  I  V  N  K  R  K  *  T  A  G  Q  T  Y  A  S  P  V  S  F  L  M  W  H  L  *  T  K  C  H  K  N  L  V  S  D  C  K  V  D  F  L  V  S  Y  I  N  K  R  G  N  F  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06HBa0010E05.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="45682" PGL_stop="41845"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="45682" e_stop="45515"/>
            <exon e_start="44226" e_stop="44178"/>
            <exon e_start="43507" e_stop="43445"/>
            <exon e_start="43363" e_stop="43299"/>
            <exon e_start="42553" e_stop="41845"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.689" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.792" acc_prob="0.970" e_score="1.000"/>
          <exon-intron don_prob="0.663" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="45682" e_stop="45515" e_length="168"/>
          </exon>
          <intron i_serial="1" don_prob="0.689" acc_prob="0.998">
            <gDNA_intron_boundary i_start="45514" i_stop="44227" i_length="1288"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="44226" e_stop="44178" e_length="49"/>
          </exon>
          <intron i_serial="2" don_prob="0.792" acc_prob="0.970">
            <gDNA_intron_boundary i_start="44177" i_stop="43508" i_length="670"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="43507" e_stop="43445" e_length="63"/>
          </exon>
          <intron i_serial="3" don_prob="0.663" acc_prob="0.993">
            <gDNA_intron_boundary i_start="43444" i_stop="43364" i_length="81"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="43363" e_stop="43299" e_length="65"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="43298" i_stop="42554" i_length="745"/>
          </intron>
          <exon e_serial="5" e_score="0.997">
            <gDNA_exon_boundary e_start="42553" e_stop="41845" e_length="709"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45682" stop="45515"/>
              <exon start="44226" stop="44178"/>
              <exon start="43507" stop="43445"/>
              <exon start="43363" stop="43299"/>
              <exon start="42553" stop="41845"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U315564" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAGGCTGATTAGGGTTTTCCTGAAGAAGAAGAAGAAGAAATCAACAAATTAATGGAAGGAATCACAGAGGGAGTGAACAAGATGAGTGTCTCAGAGACACAAAAGAAGAACAGAATCCAAGTTTCTAACACTAAGAAATCACTCTTCTTTTATGTTAATCTCTCAAAG : AGGTATATGCAACAGTACAATGAAGTGGAACTTTCTGCTCTTGGGATGG : CTATTTCCACAGTGGTTACCATTGCTGAAATTCTGAAGAACAATGGATTTGCTGTTGAGAAGA : AGATCAGGACACTCACTGTGGACATGAGGGACGAACCAGGAGCCCGACCAATACCAAAAGCAAAG : ATTGAAATAGTGCTGGGCAAGACTGAGAAGTTTGATGAGTTAATGGCTGCAGAAGCCGAGCAAAACGGGGACAATGAGGAGCAGCAGAACTGATTATTTCCAAATCTGTTCTCTTCCTGACTATTGAAGTTATTCCAATCTATACTGCATTCAGCTGTTGGGTTCTCTATGGCCTTTAATTTGATCTTTTGGAAAGTCAAAAAAAAAAAAAAGCAGCATGGTTTACTTTAAAATTCATTATTTGTTGGATGTGTTTGCCTCTTGTTTACTTGTTTATCTAAGGTGTTGTTAGATGTAAACATCTTGCTGCTATCTTCACTGTAAGTGATGTGGTCTTAATTTACGTCTGGTAGTTTTATCATTTAACAACTGGATATGAAGGTTGAGGATTCTGCCATAACCTAATTAACTGATCATTATCGTGCAGCGCCATTGACCAATTAGTACTGTCACAGTTGCCCCATGTAATTACATTGTACCATCTCTCCTCTCTAGACTACATTTGTGGGATTAGAGTGCGTATGCTTTCTGTGGCTAACGAAAACTTAAAAAGGTTATCTTTAAGGAACATACTAAAATTCTCTTACAAAAATGATATGTTCATCAACTTTTGCATTTAGGATCACACATCTCTAAATATCGGTGATGTATTGAGTTGAGCTTAATTTATTCACACACATATGGCAGTACTTAAAAGGGATCGTTTAGT</gDNA_template>
            <first_frame> E  A  D  *  G  F  P  E  E  E  E  E  E  I  N  K  L  M  E  G  I  T  E  G  V  N  K  M  S  V  S  E  T  Q  K  K  N  R  I  Q  V  S  N  T  K  K  S  L  F  F  Y  V  N  L  S  K  :  R  Y  M  Q  Q  Y  N  E  V  E  L  S  A  L  G  M   : A  I  S  T  V  V  T  I  A  E  I  L  K  N  N  G  F  A  V  E  K   : K  I  R  T  L  T  V  D  M  R  D  E  P  G  A  R  P  I  P  K  A  K  :  I  E  I  V  L  G  K  T  E  K  F  D  E  L  M  A  A  E  A  E  Q  N  G  D  N  E  E  Q  Q  N  *  L  F  P  N  L  F  S  S  *  L  L  K  L  F  Q  S  I  L  H  S  A  V  G  F  S  M  A  F  N  L  I  F  W  K  V  K  K  K  K  K  Q  H  G  L  L  *  N  S  L  F  V  G  C  V  C  L  L  F  T  C  L  S  K  V  L  L  D  V  N  I  L  L  L  S  S  L  *  V  M  W  S  *  F  T  S  G  S  F  I  I  *  Q  L  D  M  K  V  E  D  S  A  I  T  *  L  T  D  H  Y  R  A  A  P  L  T  N  *  Y  C  H  S  C  P  M  *  L  H  C  T  I  S  P  L  *  T  T  F  V  G  L  E  C  V  C  F  L  W  L  T  K  T  *  K  G  Y  L  *  G  T  Y  *  N  S  L  T  K  M  I  C  S  S  T  F  A  F  R  I  T  H  L  *  I  S  V  M  Y  *  V  E  L  N  L  F  T  H  I  W  Q  Y  L  K  G  I  V  *  </first_frame>
            <second_frame>  R  L  I  R  V  F  L  K  K  K  K  K  K  S  T  N  *  W  K  E  S  Q  R  E  *  T  R  *  V  S  Q  R  H  K  R  R  T  E  S  K  F  L  T  L  R  N  H  S  S  F  M  L  I  S  Q  R :   G  I  C  N  S  T  M  K  W  N  F  L  L  L  G  W  :  L  F  P  Q  W  L  P  L  L  K  F  *  R  T  M  D  L  L  L  R  R  :  R  S  G  H  S  L  W  T  *  G  T  N  Q  E  P  D  Q  Y  Q  K  Q  R :   L  K  *  C  W  A  R  L  R  S  L  M  S  *  W  L  Q  K  P  S  K  T  G  T  M  R  S  S  R  T  D  Y  F  Q  I  C  S  L  P  D  Y  *  S  Y  S  N  L  Y  C  I  Q  L  L  G  S  L  W  P  L  I  *  S  F  G  K  S  K  K  K  K  S  S  M  V  Y  F  K  I  H  Y  L  L  D  V  F  A  S  C  L  L  V  Y  L  R  C  C  *  M  *  T  S  C  C  Y  L  H  C  K  *  C  G  L  N  L  R  L  V  V  L  S  F  N  N  W  I  *  R  L  R  I  L  P  *  P  N  *  L  I  I  I  V  Q  R  H  *  P  I  S  T  V  T  V  A  P  C  N  Y  I  V  P  S  L  L  S  R  L  H  L  W  D  *  S  A  Y  A  F  C  G  *  R  K  L  K  K  V  I  F  K  E  H  T  K  I  L  L  Q  K  *  Y  V  H  Q  L  L  H  L  G  S  H  I  S  K  Y  R  *  C  I  E  L  S  L  I  Y  S  H  T  Y  G  S  T  *  K  G  S  F  S </second_frame>
            <third_frame>   G  *  L  G  F  S  *  R  R  R  R  R  N  Q  Q  I  N  G  R  N  H  R  G  S  E  Q  D  E  C  L  R  D  T  K  E  E  Q  N  P  S  F  *  H  *  E  I  T  L  L  L  C  *  S  L  K   : E  V  Y  A  T  V  Q  *  S  G  T  F  C  S  W  D  G :   Y  F  H  S  G  Y  H  C  *  N  S  E  E  Q  W  I  C  C  *  E  E :   D  Q  D  T  H  C  G  H  E  G  R  T  R  S  P  T  N  T  K  S  K   : D  *  N  S  A  G  Q  D  *  E  V  *  *  V  N  G  C  R  S  R  A  K  R  G  Q  *  G  A  A  E  L  I  I  S  K  S  V  L  F  L  T  I  E  V  I  P  I  Y  T  A  F  S  C  W  V  L  Y  G  L  *  F  D  L  L  E  S  Q  K  K  K  K  A  A  W  F  T  L  K  F  I  I  C  W  M  C  L  P  L  V  Y  L  F  I  *  G  V  V  R  C  K  H  L  A  A  I  F  T  V  S  D  V  V  L  I  Y  V  W  *  F  Y  H  L  T  T  G  Y  E  G  *  G  F  C  H  N  L  I  N  *  S  L  S  C  S  A  I  D  Q  L  V  L  S  Q  L  P  H  V  I  T  L  Y  H  L  S  S  L  D  Y  I  C  G  I  R  V  R  M  L  S  V  A  N  E  N  L  K  R  L  S  L  R  N  I  L  K  F  S  Y  K  N  D  M  F  I  N  F  C  I  *  D  H  T  S  L  N  I  G  D  V  L  S  *  A  *  F  I  H  T  H  M  A  V  L  K  R  D  R  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0010E05.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="45670" stop="45515"/>
                    <exon start="44226" stop="44178"/>
                    <exon start="43507" stop="43445"/>
                    <exon start="43363" stop="43299"/>
                    <exon start="42553" stop="42461"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>423</number_coding_nucleotides>
                  <number_encoded_amino_acids>141</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GFPEEEEEEINKLMEGITEGVNKMSVSETQKKNRIQVSNTKKSLFFYVNLSKRYMQQYNEVELSALGMAISTVVTIAEILKNNGFAVEKKIRTLTVDMRDEPGARPIPKAKIEIVLGKTEKFDELMAAEAEQNGDNEEQQN*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0010E05.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="42140" stop="41934"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SLSCSAIDQLVLSQLPHVITLYHLSSLDYICGIRVRMLSVANENLKRLSLRNILKFSYKNDMFINFCI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="61757" PGL_stop="59048"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="61757" e_stop="59048"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.916"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.916">
            <gDNA_exon_boundary e_start="61757" e_stop="59048" e_length="2710"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61757" stop="61045"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U326740" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61237" stop="60580"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335935" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61168" stop="60412"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U317065" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60765" stop="60436"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335937" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60559" stop="60001"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335930" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60555" stop="59119"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U317064" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59480" stop="59048"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335932" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCGTATTTCTGACACATTAGTAGGTCTTACCTAATTCTTTACTGTCTCAATCTTAGATGGATCCACCATCACTCCCTCCTTAGAGACCACGTGTCCCAAGAAGGACACTAAATCTAGCCAAAACTCACACTTGGAGAATTTGGCATAAAGCTTCTTCTTCCTCAATAACTCTAACACCATTCTCAAATGCTCCTCATGTTCCTTCTTACTCTTGCAGTATATCAATATATCATCAATAAATACGATCACAAAGAGATCCAGATATGGCTTGAAAATCCCGTTCATCAAACTCATGAACGCAGTAGGGGCATTCGTAAGACCAAAAGACATTACCACAAATTCATAATGCCCATATCTAGTTCGAAAAGCAGTCTTTGGCACATCCGTTGCCCATATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGAGGATACTTGTTCTTAATAGTTACCTTGTTCAATTGCCGGTAGTCTATGCACATCCGAAAACTCCCATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGATCTAATGAAGCCTTTGCTCAACAACTCTTGAAGTTGTGCTTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTACCCGGTTCAAGATCAATACAGAAGTCAATATCTCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATTCAGAAACTCACGGACCACCGAAACCGACTCAATTGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTAACTAACCAGTTTCTTAGCACGAAGAAAGGAGATGATACGCACCGGATTGGAAGTGTAGTCACCCTTCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCATCCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACATGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATACAATCACAAACCAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGAGCCCTTTCGTTTGTTTGTCCGTTGCCCCTACCATGTTGTGATGTAGTGTCTCCAGCTTGCCCATCACCTCGACCATTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACTTCTACCTCTAGCCATTGGGGGCCTATAACTCTGTTTGGGACAATTCCTCCTAATATGTCCAGTCTCCCCACATCCATAACACTCTCTAGAGTCAAGCATAGGCCTCTCAGAGAAGTGTTGACCGGTCTGAGGTGGACCCCCAACTATAGTCTGTAGCGAAGACTGAATTGGTCGAACTGAGTAACCTCCGGAACCCTGTCCTCTAGAGTAAGAACCATTAAACTCACCTCCCTTTCGAAACCTCTTTGATGTCGATGCCATGGTGAATTCATCTGGCTTCTATCCTTCCACCTCTACCACGAAATCTACCACTTCTTGGAAGGATTTTGCCGTAGCCGCTACCTGTAAGGCTGAAATCCGCAACTCTGACCTCAACCCCTTCATAAAACGACGAATCCGCTCTTGTGGACTGAAACAAAGTTGGGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATATGCATTGACCGACATCTTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCTATCCCTCAATGTCCGAGGGATATACTTCTCCATAAACAAGCTAGAGAATGACGCCCAAGTCATAGGTGGTGCCTCTGTTCGTTGACACTCAACATGTGACCGCCACCACATTTTGGCGTTCCCTTGAAACTGATAACTCACGAACTCAACACCAAACCGTTCTACAATACCCATCTTGTGTAGTAGCTCATGACAGTCAACCAGAAAATCGTAAGCATCCTCAAATTCAGTACCCTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGTTGATCATTTGTCATTATAGGCCCAGTAGTCAGACGTGGAAACGTGCCTATATCTAATGAGGCATCCATACGAGGAGCCATAGTGGCTGCATGTTGTACCTCTGAAACCGGAGGTGTTGGTGCAGAAAACACTGGAGGTGCCTGACCTTGATCAGACAACCCACTGAGATAGGCGAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCAATCCCTCATTCTGCACTTGTTCATTTTCCCCATCCTCCCCTTCTCTTATTACTTCCTCAGTCGGTGGAGGAGTCACTGCCGTAGTATCAGATGGGCTAGATGCTCGTCCTCTTCCCCTAGAGGACGTCCTCCCACGACCTCTACCACGCCCTCTTGCCGCTGCTCTTC</gDNA_template>
            <first_frame> E  S  L  D  K  S  A  V  V  A  S  *  P  N  K  A  P  Y  F  *  H  I  S  R  S  Y  L  I  L  Y  C  L  N  L  R  W  I  H  H  H  S  L  L  R  D  H  V  S  Q  E  G  H  *  I  *  P  K  L  T  L  G  E  F  G  I  K  L  L  L  P  Q  *  L  *  H  H  S  Q  M  L  L  M  F  L  L  T  L  A  V  Y  Q  Y  I  I  N  K  Y  D  H  K  E  I  Q  I  W  L  E  N  P  V  H  Q  T  H  E  R  S  R  G  I  R  K  T  K  R  H  Y  H  K  F  I  M  P  I  S  S  S  K  S  S  L  W  H  I  R  C  P  Y  F  Q  L  M  I  T  G  S  Q  V  N  L  R  E  D  T  S  T  L  *  L  I  E  Q  V  I  N  A  R  K  R  I  L  V  L  N  S  Y  L  V  Q  L  P  V  V  Y  A  H  P  K  T  P  I  L  L  L  Y  K  Q  N  R  S  T  P  R  R  C  T  *  S  N  E  A  F  A  Q  Q  L  L  K  L  C  F  *  L  S  *  L  R  G  S  H  S  I  R  G  Y  R  N  G  A  S  T  R  F  K  I  N  T  E  V  N  I  S  I  W  W  H  T  R  K  I  C  R  E  H  I  Q  K  L  T  D  H  R  N  R  L  N  *  R  Y  L  G  S  V  I  L  E  M  C  Q  E  S  *  T  P  L  T  N  Q  F  L  S  T  K  K  G  D  D  T  H  R  I  G  S  V  V  T  L  P  H  *  R  I  C  P  R  L  G  *  R  H  R  F  S  I  T  I  K  I  A  N  C  G  E  S  Q  V  I  P  R  I  T  S  K  S  S  I  S  K  I  T  K  S  T  *  V  L  L  P  T  K  F  T  K  Q  D  L  Y  T  F  S  T  T  T  D  S  P  T  G  V  E  T  *  I  G  I  S  S  N  S  Q  C  K  F  R  P  L  A  N  E  E  D  T  *  E  N  V  D  P  G  S  N  N  T  E  A  I  Q  S  Q  T  R  R  L  P  V  M  T  A  S  D  A  S  A  S  D  R  P  G  K  A  *  Q  *  A  L  S  F  V  C  P  L  P  L  P  C  C  D  V  V  S  P  A  C  P  S  P  R  P  F  W  *  P  P  L  P  R  P  P  R  P  P  E  *  R  P  L  P  *  P  L  L  P  L  A  I  G  G  L  *  L  C  L  G  Q  F  L  L  I  C  P  V  S  P  H  P  *  H  S  L  E  S  S  I  G  L  S  E  K  C  *  P  V  *  G  G  P  P  T  I  V  C  S  E  D  *  I  G  R  T  E  *  P  P  E  P  C  P  L  E  *  E  P  L  N  S  P  P  F  R  N  L  F  D  V  D  A  M  V  N  S  S  G  F  Y  P  S  T  S  T  T  K  S  T  T  S  W  K  D  F  A  V  A  A  T  C  K  A  E  I  R  N  S  D  L  N  P  F  I  K  R  R  I  R  S  C  G  L  K  Q  S  W  V  A  Y  L  D  S  A  R  N  L  A  S  Y  A  L  T  D  I  L  P  C  S  R  L  K  N  S  S  L  F  L  S  L  N  V  R  G  I  Y  F  S  I  N  K  L  E  N  D  A  Q  V  I  G  G  A  S  V  R  *  H  S  T  C  D  R  H  H  I  L  A  F  P  *  N  *  *  L  T  N  S  T  P  N  R  S  T  I  P  I  L  C  S  S  S  *  Q  S  T  R  K  S  *  A  S  S  N  S  V  P  L  K  T  G  G  F  N  F  K  N  L  L  K  S  S  C  *  S  F  V  I  I  G  P  V  V  R  R  G  N  V  P  I  S  N  E  A  S  I  R  G  A  I  V  A  A  C  C  T  S  E  T  G  G  V  G  A  E  N  T  G  G  A  *  P  *  S  D  N  P  L  R  *  A  R  T  *  L  I  I  S  G  V  G  W  G  G  N  P  S  F  C  T  C  S  F  S  P  S  S  P  S  L  I  T  S  S  V  G  G  G  V  T  A  V  V  S  D  G  L  D  A  R  P  L  P  L  E  D  V  L  P  R  P  L  P  R  P  L  A  A  A  L  </first_frame>
            <second_frame>  N  P  L  T  N  R  R  *  *  L  A  N  P  T  K  L  R  I  S  D  T  L  V  G  L  T  *  F  F  T  V  S  I  L  D  G  S  T  I  T  P  S  L  E  T  T  C  P  K  K  D  T  K  S  S  Q  N  S  H  L  E  N  L  A  *  S  F  F  F  L  N  N  S  N  T  I  L  K  C  S  S  C  S  F  L  L  L  Q  Y  I  N  I  S  S  I  N  T  I  T  K  R  S  R  Y  G  L  K  I  P  F  I  K  L  M  N  A  V  G  A  F  V  R  P  K  D  I  T  T  N  S  *  C  P  Y  L  V  R  K  A  V  F  G  T  S  V  A  H  I  F  N  *  *  *  P  D  L  K  S  I  L  E  K  T  Q  A  P  C  N  *  S  N  K  S  S  M  R  G  R  G  Y  L  F  L  I  V  T  L  F  N  C  R  *  S  M  H  I  R  K  L  P  S  F  F  F  T  N  K  T  G  A  P  Q  G  D  A  L  D  L  M  K  P  L  L  N  N  S  *  S  C  A  F  N  S  L  N  S  A  G  A  I  L  *  G  G  I  E  M  G  R  V  P  G  S  R  S  I  Q  K  S  I  S  L  S  G  G  I  P  G  R  S  A  G  N  T  F  R  N  S  R  T  T  E  T  D  S  I  E  G  T  W  V  V  S  S  L  R  C  A  K  K  A  K  H  P  *  L  T  S  F  L  A  R  R  K  E  M  I  R  T  G  L  E  V  *  S  P  F  H  T  N  G  S  V  P  G  L  A  N  V  T  V  L  A  L  Q  S  R  S  Q  I  A  E  K  A  K  S  Y  P  E  L  H  Q  N  H  P  F  L  R  *  P  N  L  H  K  C  C  S  P  Q  S  S  P  N  K  T  Y  I  P  F  Q  L  P  Q  T  H  P  P  E  *  K  H  E  *  A  Y  Q  V  I  H  N  V  N  L  D  H  *  Q  M  R  K  I  H  K  K  M  W  I  Q  D  Q  T  I  Q  K  P  Y  N  H  K  P  E  D  Y  L  *  *  Q  H  Q  M  P  P  L  Q  T  A  Q  G  K  R  N  N  E  P  F  R  L  F  V  R  C  P  Y  H  V  V  M  *  C  L  Q  L  A  H  H  L  D  H  F  G  D  H  H  Y  L  D  H  H  V  L  Q  N  N  G  L  Y  H  D  H  F  Y  L  *  P  L  G  A  Y  N  S  V  W  D  N  S  S  *  Y  V  Q  S  P  H  I  H  N  T  L  *  S  Q  A  *  A  S  Q  R  S  V  D  R  S  E  V  D  P  Q  L  *  S  V  A  K  T  E  L  V  E  L  S  N  L  R  N  P  V  L  *  S  K  N  H  *  T  H  L  P  F  E  T  S  L  M  S  M  P  W  *  I  H  L  A  S  I  L  P  P  L  P  R  N  L  P  L  L  G  R  I  L  P  *  P  L  P  V  R  L  K  S  A  T  L  T  S  T  P  S  *  N  D  E  S  A  L  V  D  *  N  K  V  G  W  H  I  W  I  V  H  E  T  *  P  H  M  H  *  P  T  S  Y  L  A  L  G  S  R  T  H  P  F  S  Y  P  S  M  S  E  G  Y  T  S  P  *  T  S  *  R  M  T  P  K  S  *  V  V  P  L  F  V  D  T  Q  H  V  T  A  T  T  F  W  R  S  L  E  T  D  N  S  R  T  Q  H  Q  T  V  L  Q  Y  P  S  C  V  V  A  H  D  S  Q  P  E  N  R  K  H  P  Q  I  Q  Y  P  *  R  L  E  V  S  I  S  R  T  Y  *  K  V  H  V  D  H  L  S  L  *  A  Q  *  S  D  V  E  T  C  L  Y  L  M  R  H  P  Y  E  E  P  *  W  L  H  V  V  P  L  K  P  E  V  L  V  Q  K  T  L  E  V  P  D  L  D  Q  T  T  H  *  D  R  R  E  P  D  *  S  S  L  G  *  V  G  V  A  I  P  H  S  A  L  V  H  F  P  H  P  P  L  L  L  L  L  P  Q  S  V  E  E  S  L  P  *  Y  Q  M  G  *  M  L  V  L  F  P  *  R  T  S  S  H  D  L  Y  H  A  L  L  P  L  L  F </second_frame>
            <third_frame>   I  P  *  Q  I  G  G  S  S  *  L  T  Q  Q  S  S  V  F  L  T  H  *  *  V  L  P  N  S  L  L  S  Q  S  *  M  D  P  P  S  L  P  P  *  R  P  R  V  P  R  R  T  L  N  L  A  K  T  H  T  W  R  I  W  H  K  A  S  S  S  S  I  T  L  T  P  F  S  N  A  P  H  V  P  S  Y  S  C  S  I  S  I  Y  H  Q  *  I  R  S  Q  R  D  P  D  M  A  *  K  S  R  S  S  N  S  *  T  Q  *  G  H  S  *  D  Q  K  T  L  P  Q  I  H  N  A  H  I  *  F  E  K  Q  S  L  A  H  P  L  P  I  F  S  I  D  D  N  R  I  S  S  Q  S  *  R  R  H  K  H  L  V  T  D  R  T  S  H  Q  C  E  E  E  D  T  C  S  *  *  L  P  C  S  I  A  G  S  L  C  T  S  E  N  S  H  P  S  S  L  Q  T  K  P  E  H  P  K  E  M  H  L  I  *  *  S  L  C  S  T  T  L  E  V  V  L  L  T  L  L  T  P  R  E  P  F  Y  K  G  V  *  K  W  G  E  Y  P  V  Q  D  Q  Y  R  S  Q  Y  L  Y  L  V  A  Y  Q  E  D  L  Q  G  T  H  S  E  T  H  G  P  P  K  P  T  Q  L  K  V  L  G  *  C  H  P  *  D  V  P  R  K  L  N  T  L  N  *  P  V  S  *  H  E  E  R  R  *  Y  A  P  D  W  K  C  S  H  P  S  T  L  T  D  L  S  Q  A  W  L  T  S  P  F  *  H  Y  N  Q  D  R  K  L  R  R  K  P  S  H  T  Q  N  Y  I  K  I  I  H  F  *  D  N  Q  I  Y  I  S  V  A  P  H  K  V  H  Q  T  R  P  I  Y  L  F  N  Y  H  R  L  T  H  R  S  R  N  M  N  R  H  I  K  *  F  T  M  *  I  *  T  I  S  K  *  G  R  Y  I  R  K  C  G  S  R  I  K  Q  Y  R  S  H  T  I  T  N  Q  K  I  T  C  D  D  S  I  R  C  L  R  F  R  P  P  R  E  S  V  T  M  S  P  F  V  C  L  S  V  A  P  T  M  L  *  C  S  V  S  S  L  P  I  T  S  T  I  L  V  T  T  I  T  S  T  T  T  S  S  R  I  T  A  S  T  M  T  T  S  T  S  S  H  W  G  P  I  T  L  F  G  T  I  P  P  N  M  S  S  L  P  T  S  I  T  L  S  R  V  K  H  R  P  L  R  E  V  L  T  G  L  R  W  T  P  N  Y  S  L  *  R  R  L  N  W  S  N  *  V  T  S  G  T  L  S  S  R  V  R  T  I  K  L  T  S  L  S  K  P  L  *  C  R  C  H  G  E  F  I  W  L  L  S  F  H  L  Y  H  E  I  Y  H  F  L  E  G  F  C  R  S  R  Y  L  *  G  *  N  P  Q  L  *  P  Q  P  L  H  K  T  T  N  P  L  L  W  T  E  T  K  L  G  G  I  S  G  *  C  T  K  L  S  L  I  C  I  D  R  H  L  T  L  L  *  A  Q  E  L  I  P  F  P  I  P  Q  C  P  R  D  I  L  L  H  K  Q  A  R  E  *  R  P  S  H  R  W  C  L  C  S  L  T  L  N  M  *  P  P  P  H  F  G  V  P  L  K  L  I  T  H  E  L  N  T  K  P  F  Y  N  T  H  L  V  *  *  L  M  T  V  N  Q  K  I  V  S  I  L  K  F  S  T  L  E  D  W  R  F  Q  F  Q  E  L  T  E  K  F  M  L  I  I  C  H  Y  R  P  S  S  Q  T  W  K  R  A  Y  I  *  *  G  I  H  T  R  S  H  S  G  C  M  L  Y  L  *  N  R  R  C  W  C  R  K  H  W  R  C  L  T  L  I  R  Q  P  T  E  I  G  E  N  L  I  D  H  L  W  G  R  L  G  W  Q  S  L  I  L  H  L  F  I  F  P  I  L  P  F  S  Y  Y  F  L  S  R  W  R  S  H  C  R  S  I  R  W  A  R  C  S  S  S  S  P  R  G  R  P  P  T  T  S  T  T  P  S  C  R  C  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0010E05.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="60017" stop="59628"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>387</number_coding_nucleotides>
                  <number_encoded_amino_acids>129</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EPLNSPPFRNLFDVDAMVNSSGFYPSTSTTKSTTSWKDFAVAATCKAEIRNSDLNPFIKRRIRSCGLKQSWVAYLDSARNLASYALTDILPCSRLKNSSLFLSLNVRGIYFSINKLENDAQVIGGASVR*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0010E05.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="61535" stop="61254"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>279</number_coding_nucleotides>
                  <number_encoded_amino_acids>93</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HHSQMLLMFLLTLAVYQYIINKYDHKEIQIWLENPVHQTHERSRGIRKTKRHYHKFIMPISSSKSSLWHIRCPYFQLMITGSQVNLREDTSTL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0010E05.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="59325" stop="59050"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>276</number_coding_nucleotides>
                  <number_encoded_amino_acids>92</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NRRCWCRKHWRCLTLIRQPTEIGENLIDHLWGRLGWQSLILHLFIFPILPFSYYFLSRWRSHCRSIRWARCSSSSPRGRPPTTSTTPSCRCS</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0010E05.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="4"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="60327" stop="60073"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>252</number_coding_nucleotides>
                  <number_encoded_amino_acids>84</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CSVSSLPITSTILVTTITSTTTSSRITASTMTTSTSSHWGPITLFGTIPPNMSSLPTSITLSRVKHRPLREVLTGLRWTPNYSL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="59115" PGL_stop="59668"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="59115" e_stop="59668"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.901"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.901">
            <gDNA_exon_boundary e_start="59115" e_stop="59668" e_length="554"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59115" stop="59668"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335931" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATCTAGCCCATCTGATACTACGGCAGTGACTCCTCCACCGACTGAGGAAGTAATAAGAGAAGGGGAGGATGGGGAAAATGAACAAGTGCAGAATGAGGGATTGCCACCCCAACCTACCCCAGAGATGATCAATCAGGTTCTCGCCTATCTCAGTGGGTTGTCTGATCAAGGTCAGGCACCTCCAGTGTTTTCTGCACCAACACCTCCGGTTTCAGAGGTACAACATGCAGCCACTATGGCTCCTCGTATGGATGCCTCATTAGATATAGGCACGTTTCCACGTCTGACTACTGGGCCTATAATGACAAATGATCAACATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTACTGAATTTGAGGATGCTTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATTGTAGAACGGTTTGGTGTTGAGTTCGTGAGTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACGAACAGAGGCACCACCTATGACTTGGGCGTCATTCT</gDNA_template>
            <first_frame> I  *  P  I  *  Y  Y  G  S  D  S  S  T  D  *  G  S  N  K  R  R  G  G  W  G  K  *  T  S  A  E  *  G  I  A  T  P  T  Y  P  R  D  D  Q  S  G  S  R  L  S  Q  W  V  V  *  S  R  S  G  T  S  S  V  F  C  T  N  T  S  G  F  R  G  T  T  C  S  H  Y  G  S  S  Y  G  C  L  I  R  Y  R  H  V  S  T  S  D  Y  W  A  Y  N  D  K  *  S  T  *  T  F  Q  *  V  L  E  I  E  T  S  S  L  Q  G  Y  *  I  *  G  C  L  R  F  S  G  *  L  S  *  A  T  T  Q  D  G  Y  C  R  T  V  W  C  *  V  R  E  L  S  V  S  R  E  R  Q  N  V  V  A  V  T  C  *  V  S  T  N  R  G  T  T  Y  D  L  G  V  I   </first_frame>
            <second_frame>  S  S  P  S  D  T  T  A  V  T  P  P  P  T  E  E  V  I  R  E  G  E  D  G  E  N  E  Q  V  Q  N  E  G  L  P  P  Q  P  T  P  E  M  I  N  Q  V  L  A  Y  L  S  G  L  S  D  Q  G  Q  A  P  P  V  F  S  A  P  T  P  P  V  S  E  V  Q  H  A  A  T  M  A  P  R  M  D  A  S  L  D  I  G  T  F  P  R  L  T  T  G  P  I  M  T  N  D  Q  H  E  L  F  S  K  F  L  K  L  K  P  P  V  F  K  G  T  E  F  E  D  A  Y  D  F  L  V  D  C  H  E  L  L  H  K  M  G  I  V  E  R  F  G  V  E  F  V  S  Y  Q  F  Q  G  N  A  K  M  W  W  R  S  H  V  E  C  Q  R  T  E  A  P  P  M  T  W  A  S  F  </second_frame>
            <third_frame>   L  A  H  L  I  L  R  Q  *  L  L  H  R  L  R  K  *  *  E  K  G  R  M  G  K  M  N  K  C  R  M  R  D  C  H  P  N  L  P  Q  R  *  S  I  R  F  S  P  I  S  V  G  C  L  I  K  V  R  H  L  Q  C  F  L  H  Q  H  L  R  F  Q  R  Y  N  M  Q  P  L  W  L  L  V  W  M  P  H  *  I  *  A  R  F  H  V  *  L  L  G  L  *  *  Q  M  I  N  M  N  F  S  V  S  S  *  N  *  N  L  Q  S  S  R  V  L  N  L  R  M  L  T  I  F  W  L  T  V  M  S  Y  Y  T  R  W  V  L  *  N  G  L  V  L  S  S  *  V  I  S  F  K  G  T  P  K  C  G  G  G  H  M  L  S  V  N  E  Q  R  H  H  L  *  L  G  R  H  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0010E05.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="59116" stop="59667"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>552</number_coding_nucleotides>
                  <number_encoded_amino_acids>184</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSPSDTTAVTPPPTEEVIREGEDGENEQVQNEGLPPQPTPEMINQVLAYLSGLSDQGQAPPVFSAPTPPVSEVQHAATMAPRMDASLDIGTFPRLTTGPIMTNDQHELFSKFLKLKPPVFKGTEFEDAYDFLVDCHELLHKMGIVERFGVEFVSYQFQGNAKMWWRSHVECQRTEAPPMTWASF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="59742" PGL_stop="61185"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="59742" e_stop="59914"/>
            <exon e_start="60659" e_stop="61185"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.954"/>
          <exon-only e_score="0.907"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.954">
            <gDNA_exon_boundary e_start="59742" e_stop="59914" e_length="173"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="59915" i_stop="60658" i_length="744"/>
          </intron>
          <exon e_serial="2" e_score="0.907">
            <gDNA_exon_boundary e_start="60659" e_stop="61185" e_length="527"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59742" stop="59914"/>
              <exon start="60659" stop="61185"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335938" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCAAGGTAAGATGTCGGTCAATGCATATGAGGCTAAGTTTCGTGCACTATCCAGATATGCCACCCAACTTTGTTTCAGTCCACAAGAGCGGATTCGTCGTTTTATGAAGGGGTTGAGGTCAGAGTTGCGGATTTCAGCCTTACAGGTAGCGGCTACGGCAAAATCCTTCCAAG : AAATGGATGATTTTGATGTAATTCTGGGTATGACTTGGCTTTCTCCGCAATTTGCGATCTTGATTGTAATGCTAAAACGGTGACGTTAGCCAAGCCTGGGACAGATCCGTTAGTGTGGAAGGGTGACTACACTTCCAATCCGGTGCGTATCATCTCCTTTCTTCGTGCTAAGAAACTGGTTAGTTAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATGACACTACCCAAGTACCTTCAATTGAGTCGGTTTCGGTGGTCCGTGAGTTTCTGAATGTGTTCCCTGCAGATCTTCCTGGTATGCCACCAGATAGAGATATTGACTTCTGTATTGATCTTGAACCGGGTACTCGCCCCATTTCTATACCCCCTTATAGAATGGCTCCCGCGGAGTTAAGAGAGTTAAAAGCACAACTTCAAGAGTTGTTGAGCAAAGGCTTCATTAGATCAAGTGCATCTCCTTGGGGTGCTCCGGTTTTGTTTGTAAAGAAGAAGGATGGGAGTTTTCGGATGTGCATAGACTACC</gDNA_template>
            <first_frame> A  R  *  D  V  G  Q  C  I  *  G  *  V  S  C  T  I  Q  I  C  H  P  T  L  F  Q  S  T  R  A  D  S  S  F  Y  E  G  V  E  V  R  V  A  D  F  S  L  T  G  S  G  Y  G  K  I  L  P  R :   N  G  *  F  *  C  N  S  G  Y  D  L  A  F  S  A  I  C  D  L  D  C  N  A  K  T  V  T  L  A  K  P  G  T  D  P  L  V  W  K  G  D  Y  T  S  N  P  V  R  I  I  S  F  L  R  A  K  K  L  V  S  *  G  C  L  A  F  L  A  H  L  K  D  D  T  T  Q  V  P  S  I  E  S  V  S  V  V  R  E  F  L  N  V  F  P  A  D  L  P  G  M  P  P  D  R  D  I  D  F  C  I  D  L  E  P  G  T  R  P  I  S  I  P  P  Y  R  M  A  P  A  E  L  R  E  L  K  A  Q  L  Q  E  L  L  S  K  G  F  I  R  S  S  A  S  P  W  G  A  P  V  L  F  V  K  K  K  D  G  S  F  R  M  C  I  D  Y  </first_frame>
            <second_frame>  Q  G  K  M  S  V  N  A  Y  E  A  K  F  R  A  L  S  R  Y  A  T  Q  L  C  F  S  P  Q  E  R  I  R  R  F  M  K  G  L  R  S  E  L  R  I  S  A  L  Q  V  A  A  T  A  K  S  F  Q   : E  M  D  D  F  D  V  I  L  G  M  T  W  L  S  P  Q  F  A  I  L  I  V  M  L  K  R  *  R  *  P  S  L  G  Q  I  R  *  C  G  R  V  T  T  L  P  I  R  C  V  S  S  P  F  F  V  L  R  N  W  L  V  K  G  V  *  L  S  W  H  I  S  R  M  T  L  P  K  Y  L  Q  L  S  R  F  R  W  S  V  S  F  *  M  C  S  L  Q  I  F  L  V  C  H  Q  I  E  I  L  T  S  V  L  I  L  N  R  V  L  A  P  F  L  Y  P  L  I  E  W  L  P  R  S  *  E  S  *  K  H  N  F  K  S  C  *  A  K  A  S  L  D  Q  V  H  L  L  G  V  L  R  F  C  L  *  R  R  R  M  G  V  F  G  C  A  *  T  T </second_frame>
            <third_frame>   K  V  R  C  R  S  M  H  M  R  L  S  F  V  H  Y  P  D  M  P  P  N  F  V  S  V  H  K  S  G  F  V  V  L  *  R  G  *  G  Q  S  C  G  F  Q  P  Y  R  *  R  L  R  Q  N  P  S  K  :  K  W  M  I  L  M  *  F  W  V  *  L  G  F  L  R  N  L  R  S  *  L  *  C  *  N  G  D  V  S  Q  A  W  D  R  S  V  S  V  E  G  *  L  H  F  Q  S  G  A  Y  H  L  L  S  S  C  *  E  T  G  *  L  R  V  F  S  F  L  G  T  S  Q  G  *  H  Y  P  S  T  F  N  *  V  G  F  G  G  P  *  V  S  E  C  V  P  C  R  S  S  W  Y  A  T  R  *  R  Y  *  L  L  Y  *  S  *  T  G  Y  S  P  H  F  Y  T  P  L  *  N  G  S  R  G  V  K  R  V  K  S  T  T  S  R  V  V  E  Q  R  L  H  *  I  K  C  I  S  L  G  C  S  G  F  V  C  K  E  E  G  W  E  F  S  D  V  H  R  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0010E05.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="60846" stop="61184"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>339</number_coding_nucleotides>
                  <number_encoded_amino_acids>113</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GCLAFLAHLKDDTTQVPSIESVSVVREFLNVFPADLPGMPPDRDIDFCIDLEPGTRPISIPPYRMAPAELRELKAQLQELLSKGFIRSSASPWGAPVLFVKKKDGSFRMCIDY</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06HBa0010E05.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="59743" stop="59914"/>
                    <exon start="60659" stop="60741"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>252</number_coding_nucleotides>
                  <number_encoded_amino_acids>84</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QGKMSVNAYEAKFRALSRYATQLCFSPQERIRRFMKGLRSELRISALQVAATAKSFQEMDDFDVILGMTWLSPQFAILIVMLKR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="63238" PGL_stop="63062"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="63238" e_stop="63062"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.910"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.910">
            <gDNA_exon_boundary e_start="63238" e_stop="63062" e_length="177"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63238" stop="63062"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U345909" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTACATCTTCTCCCATATAGTGCCTCAAATGGGGCCATATCAATGCTTGAGTGATAGCTATTGTTGTAGGAGAACTCTGCTAAGGGTAAGAAGCTATCCCACTGACCACCAAATTCTATCACACATGCACGAAGCATATCCTCCAACACTTGAATCGTTCGCTCAGACTGACCATCG</gDNA_template>
            <first_frame> L  H  L  L  P  Y  S  A  S  N  G  A  I  S  M  L  E  *  *  L  L  L  *  E  N  S  A  K  G  K  K  L  S  H  *  P  P  N  S  I  T  H  A  R  S  I  S  S  N  T  *  I  V  R  S  D  *  P  S </first_frame>
            <second_frame>  Y  I  F  S  H  I  V  P  Q  M  G  P  Y  Q  C  L  S  D  S  Y  C  C  R  R  T  L  L  R  V  R  S  Y  P  T  D  H  Q  I  L  S  H  M  H  E  A  Y  P  P  T  L  E  S  F  A  Q  T  D  H   </second_frame>
            <third_frame>   T  S  S  P  I  *  C  L  K  W  G  H  I  N  A  *  V  I  A  I  V  V  G  E  L  C  *  G  *  E  A  I  P  L  T  T  K  F  Y  H  T  C  T  K  H  I  L  Q  H  L  N  R  S  L  R  L  T  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06HBa0010E05.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 38 chains have been computed
$ 
$ memory statistics:
$ 29016 bytes spliced alignments in total
$ 13 spliced alignments have been stored
$ 2232 bytes was the average size of a spliced alignment
$ 12904 bytes predicted gene locations in total
$ 7 predicted gene locations have been stored
$ 1843 bytes was the average size of a predicted gene location
$ 2 megabytes was the average size of the backtrace matrix
$ 43 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-14 20:50:00
-->
